Citrus Sinensis ID: 048309
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 288 | 2.2.26 [Sep-21-2011] | |||||||
| P31049 | 394 | Probable fatty acid methy | no | no | 0.760 | 0.555 | 0.297 | 1e-22 | |
| P0A9H7 | 382 | Cyclopropane-fatty-acyl-p | N/A | no | 0.704 | 0.531 | 0.295 | 3e-20 | |
| P0A9H8 | 382 | Cyclopropane-fatty-acyl-p | yes | no | 0.704 | 0.531 | 0.295 | 3e-20 | |
| Q49807 | 308 | Cyclopropane mycolic acid | no | no | 0.555 | 0.519 | 0.306 | 3e-13 | |
| P0C5C2 | 287 | Cyclopropane mycolic acid | no | no | 0.583 | 0.585 | 0.284 | 7e-13 | |
| A5U866 | 287 | Cyclopropane mycolic acid | no | no | 0.583 | 0.585 | 0.284 | 7e-13 | |
| Q7U1K1 | 301 | Hydroxymycolate synthase | no | no | 0.520 | 0.498 | 0.301 | 9e-13 | |
| Q79FX8 | 301 | Hydroxymycolate synthase | no | no | 0.520 | 0.498 | 0.301 | 1e-12 | |
| A5U027 | 301 | Hydroxymycolate synthase | no | no | 0.520 | 0.498 | 0.301 | 1e-12 | |
| Q79FX6 | 287 | Cyclopropane mycolic acid | no | no | 0.638 | 0.641 | 0.254 | 4e-12 |
| >sp|P31049|FAMT_PSEPU Probable fatty acid methyltransferase OS=Pseudomonas putida PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 107 bits (266), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 82/276 (29%), Positives = 119/276 (43%), Gaps = 57/276 (20%)
Query: 38 ISYHYDL---------------------DEDEDLKVAQMRKHSLLIEKARVSKEHEVLEI 76
ISYHYD+ + D L AQ K L K R++ +L++
Sbjct: 107 ISYHYDVSNAFYQLWLDQDMAYSCAYFREPDNTLDQAQQDKFDHLCRKLRLNAGDYLLDV 166
Query: 77 GCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKK 136
GCGWG A R+ GITLS EQ+K +V GL D + L + DYR LP+ +
Sbjct: 167 GCGWGGLARFAAREYDAKVFGITLSKEQLKLGRQRVKAEGLTDKVDLQILDYRDLPQDGR 226
Query: 137 YDRIISCEMMEAVGHEYMEEYFGCCESLLA--KDGLLVLQFSSTP---DARYNEYRLSSD 191
+D+++S M E VGH + Y C+ L ++G LV+ T D R R + +
Sbjct: 227 FDKVVSVGMFEHVGHANLALY---CQKLFGAVREGGLVMNHGITAKHVDGR-PVGRGAGE 282
Query: 192 FIKEYIFPGGCLPSLSRITSAMAAA--------------------------SSLSKILAL 225
FI Y+FP G LP LS I++++ A + L K AL
Sbjct: 283 FIDRYVFPHGELPHLSMISASICEAGLEVVDVESLRLHYAKTLHHWSENLENQLHKAAAL 342
Query: 226 GFNEKFIWTWEYYFDYSAAGFKPRTLGNYQIVLSRP 261
EK + W Y A F+ + +QI+ +P
Sbjct: 343 -VPEKTLRIWRLYLAGCAYAFEKGWINLHQILAVKP 377
|
Pseudomonas putida (taxid: 303) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: - |
| >sp|P0A9H7|CFA_ECOLI Cyclopropane-fatty-acyl-phospholipid synthase OS=Escherichia coli (strain K12) GN=cfa PE=1 SV=2 | Back alignment and function description |
|---|
Score = 99.4 bits (246), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 70/237 (29%), Positives = 111/237 (46%), Gaps = 34/237 (14%)
Query: 48 EDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKY 107
++L+ AQ K ++ EK ++ VL+IGCGWG A + + G+T+SAEQ K
Sbjct: 146 DNLESAQQAKLKMICEKLQLKPGMRVLDIGCGWGGLAHYMASNYDVSVVGVTISAEQQKM 205
Query: 108 AEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAK 167
A+ + GL + + L DYR L ++DRI+S M E VG + + YF + L
Sbjct: 206 AQERCE--GLD--VTILLQDYRDL--NDQFDRIVSVGMFEHVGPKNYDTYFAVVDRNLKP 259
Query: 168 DGLLVLQFSSTPDARYNEYRLSSDFIKEYIFPGGCLPSLSRI------------------ 209
+G+ +L + N +I +YIFP GCLPS+ +I
Sbjct: 260 EGIFLLHTIGSKKTDLN----VDPWINKYIFPNGCLPSVRQIAQSSEPHFVMEDWHNFGA 315
Query: 210 ---TSAMAAASSLSKI---LALGFNEKFIWTWEYYFDYSAAGFKPRTLGNYQIVLSR 260
T+ MA +A ++E+F + YY + A F+ R + +Q+V SR
Sbjct: 316 DYDTTLMAWYERFLAAWPEIADNYSERFKRMFTYYLNACAGAFRARDIQLWQVVFSR 372
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Transfers a methylene group from S-adenosyl-L-methionine to the cis double bond of an unsaturated fatty acid chain resulting in the replacement of the double bond with a methylene bridge. Escherichia coli (strain K12) (taxid: 83333) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 7 EC: 9 |
| >sp|P0A9H8|CFA_ECOL6 Cyclopropane-fatty-acyl-phospholipid synthase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=cfa PE=3 SV=2 | Back alignment and function description |
|---|
Score = 99.4 bits (246), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 70/237 (29%), Positives = 111/237 (46%), Gaps = 34/237 (14%)
Query: 48 EDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKY 107
++L+ AQ K ++ EK ++ VL+IGCGWG A + + G+T+SAEQ K
Sbjct: 146 DNLESAQQAKLKMICEKLQLKPGMRVLDIGCGWGGLAHYMASNYDVSVVGVTISAEQQKM 205
Query: 108 AEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAK 167
A+ + GL + + L DYR L ++DRI+S M E VG + + YF + L
Sbjct: 206 AQERCE--GLD--VTILLQDYRDL--NDQFDRIVSVGMFEHVGPKNYDTYFAVVDRNLKP 259
Query: 168 DGLLVLQFSSTPDARYNEYRLSSDFIKEYIFPGGCLPSLSRI------------------ 209
+G+ +L + N +I +YIFP GCLPS+ +I
Sbjct: 260 EGIFLLHTIGSKKTDLN----VDPWINKYIFPNGCLPSVRQIAQSSEPHFVMEDWHNFGA 315
Query: 210 ---TSAMAAASSLSKI---LALGFNEKFIWTWEYYFDYSAAGFKPRTLGNYQIVLSR 260
T+ MA +A ++E+F + YY + A F+ R + +Q+V SR
Sbjct: 316 DYDTTLMAWYERFLAAWPEIADNYSERFKRMFTYYLNACAGAFRARDIQLWQVVFSR 372
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Transfers a methylene group from S-adenosyl-L-methionine to the cis double bond of an unsaturated fatty acid chain resulting in the replacement of the double bond with a methylene bridge. Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) (taxid: 199310) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 7 EC: 9 |
| >sp|Q49807|CMAS2_MYCLE Cyclopropane mycolic acid synthase 2 OS=Mycobacterium leprae (strain TN) GN=cmaA2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 76.3 bits (186), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 85/183 (46%), Gaps = 23/183 (12%)
Query: 47 DEDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMK 106
D L+ AQ K L + K + +L+IGCGWG+ + + + N G+TLSA Q+
Sbjct: 53 DLTLEEAQRAKRDLALSKLGLEPGMTLLDIGCGWGSTMLHAIEKYDVNVIGLTLSANQLA 112
Query: 107 YAEMKVNEAGLQDHIRLYLCDYRQLPKAKKY----DRIISCEMME-------AVGHEYME 155
+ ++K E DH R +L +++ DRIIS E G E +
Sbjct: 113 HNKLKFAEI---DHTRTDRTKDVRLQGWEQFDEPVDRIISLGAFEHFADGAGDAGFERYD 169
Query: 156 EYFGCCESLLAKDGLLVLQFSSTPDAR-YNEYRLSS--------DFIKEYIFPGGCLPSL 206
+F C +L DG ++L PDA+ E L++ FI IFPGG LP +
Sbjct: 170 SFFKMCYDVLPDDGRMLLHTIIVPDAKETKELGLTTPMSLLRFIKFILTEIFPGGRLPKI 229
Query: 207 SRI 209
S++
Sbjct: 230 SQV 232
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Catalyzes the formation of trans cyclopropanated ketomycolate or methoxymycolate through the conversion of a double bond to a cyclopropane ring at the proximal position of an oxygenated mycolic acid via the transfer of a methylene group from S-adenosyl-L-methionine. In the absence of MmaA2, CmaA2 has a non-specific cis-cyclopropanating activity and is able to catalyze the conversion of a double bond to a cis cyclopropane ring at the distal position of an alpha mycolic acid. Cyclopropanated mycolic acids are key factors participating in cell envelope permeability, host immunomodulation and persistence. Mycobacterium leprae (taxid: 1769) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 7 EC: 9 |
| >sp|P0C5C2|CMAS1_MYCTU Cyclopropane mycolic acid synthase 1 OS=Mycobacterium tuberculosis GN=cmaA1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 74.7 bits (182), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 79/179 (44%), Gaps = 11/179 (6%)
Query: 46 EDEDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQM 105
+D L+ AQ+ K L + K + +L++GCGWG + V + N G+TLS Q
Sbjct: 41 DDMTLQEAQIAKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQA 100
Query: 106 KYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMMEAVGHEYMEEYFGCCESLL 165
+ + V + R+ L + Q + DRI+S E GHE + +F LL
Sbjct: 101 NHVQQLVANSENLRSKRVLLAGWEQFD--EPVDRIVSIGAFEHFGHERYDAFFSLAHRLL 158
Query: 166 AKDGLLVLQ-FSSTPDARYNEYRLSSD--------FIKEYIFPGGCLPSLSRITSAMAA 215
DG+++L + +E L FI IFPGG LPS+ + +A
Sbjct: 159 PADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPSIPMVQECASA 217
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Catalyzes the conversion of a double bond to a cyclopropane ring at the distal position of an alpha mycolic acid via the transfer of a methylene group from S-adenosyl-L-methionine. Cyclopropanated mycolic acids are key factors participating in cell envelope permeability, host immunomodulation and persistence. Mycobacterium tuberculosis (taxid: 1773) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 7 EC: 9 |
| >sp|A5U866|CMAS1_MYCTA Cyclopropane mycolic acid synthase 1 OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=cmaA1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 74.7 bits (182), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 79/179 (44%), Gaps = 11/179 (6%)
Query: 46 EDEDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQM 105
+D L+ AQ+ K L + K + +L++GCGWG + V + N G+TLS Q
Sbjct: 41 DDMTLQEAQIAKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQA 100
Query: 106 KYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMMEAVGHEYMEEYFGCCESLL 165
+ + V + R+ L + Q + DRI+S E GHE + +F LL
Sbjct: 101 NHVQQLVANSENLRSKRVLLAGWEQFD--EPVDRIVSIGAFEHFGHERYDAFFSLAHRLL 158
Query: 166 AKDGLLVLQ-FSSTPDARYNEYRLSSD--------FIKEYIFPGGCLPSLSRITSAMAA 215
DG+++L + +E L FI IFPGG LPS+ + +A
Sbjct: 159 PADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPSIPMVQECASA 217
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Catalyzes the conversion of a double bond to a cyclopropane ring at the distal position of an alpha mycolic acid via the transfer of a methylene group from S-adenosyl-L-methionine. Cyclopropanated mycolic acids are key factors participating in cell envelope permeability, host immunomodulation and persistence. Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) (taxid: 419947) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 7 EC: 9 |
| >sp|Q7U1K1|MMAA4_MYCBO Hydroxymycolate synthase MmaA4 OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN=cmaA PE=1 SV=1 | Back alignment and function description |
|---|
Score = 74.3 bits (181), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 78/169 (46%), Gaps = 19/169 (11%)
Query: 50 LKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAE 109
L+ AQ K L ++K + +L+IGCGWGT V + N G+TLS Q E
Sbjct: 54 LEEAQYAKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERLDVNVIGLTLSKNQHARCE 113
Query: 110 MKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDG 169
+ ++ L + A+ DRI+S E E GHE +++F C +++ DG
Sbjct: 114 QVLASIDTNRSRQVLLQGWEDF--AEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADG 171
Query: 170 LLVLQFSSTPDARYNEYRLSS-------------DFIKEYIFPGGCLPS 205
+ +Q S + Y+ Y +++ FI IFPGG LPS
Sbjct: 172 RMTVQSSVS----YHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPS 216
|
Involved in the biosynthesis of hydroxymycolate, a common precursor of oxygenated mycolic acids (methoxymycolate and ketomycolate). Probably transfers a methyl group from the S-adenosylmethionine (SAM) cofactor and, subsequently or simultaneously, a water molecule onto the double bound of ethylene substrates, leading to the formation of the hydroxylated product at the distal position. Mycobacterium bovis (taxid: 1765) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q79FX8|MMAA4_MYCTU Hydroxymycolate synthase MmaA4 OS=Mycobacterium tuberculosis GN=mmaA4 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 78/169 (46%), Gaps = 19/169 (11%)
Query: 50 LKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAE 109
L+ AQ K L ++K + +L+IGCGWGT V + N G+TLS Q E
Sbjct: 54 LEEAQYAKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCE 113
Query: 110 MKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDG 169
+ ++ L + A+ DRI+S E E GHE +++F C +++ DG
Sbjct: 114 QVLASIDTNRSRQVLLQGWEDF--AEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADG 171
Query: 170 LLVLQFSSTPDARYNEYRLSS-------------DFIKEYIFPGGCLPS 205
+ +Q S + Y+ Y +++ FI IFPGG LPS
Sbjct: 172 RMTVQSSVS----YHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPS 216
|
Involved in the biosynthesis of hydroxymycolate, a common precursor of oxygenated mycolic acids (methoxy-mycolate and keto-mycolate). Probably transfers a methyl group from the S-adenosylmethionine (SAM) cofactor and, subsequently or simultaneously, a water molecule onto the double bound of ethylene substrates, leading to the formation of the hydroxylated product at the distal position. Involved in the activation of the antitubercular drug thiacetazone (TAC). Mycobacterium tuberculosis (taxid: 1773) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|A5U027|MMAA4_MYCTA Hydroxymycolate synthase MmaA4 OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=mmaA4 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 78/169 (46%), Gaps = 19/169 (11%)
Query: 50 LKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAE 109
L+ AQ K L ++K + +L+IGCGWGT V + N G+TLS Q E
Sbjct: 54 LEEAQYAKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCE 113
Query: 110 MKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDG 169
+ ++ L + A+ DRI+S E E GHE +++F C +++ DG
Sbjct: 114 QVLASIDTNRSRQVLLQGWEDF--AEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADG 171
Query: 170 LLVLQFSSTPDARYNEYRLSS-------------DFIKEYIFPGGCLPS 205
+ +Q S + Y+ Y +++ FI IFPGG LPS
Sbjct: 172 RMTVQSSVS----YHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPS 216
|
Involved in the biosynthesis of hydroxymycolate, a common precursor of oxygenated mycolic acids (methoxymycolate and ketomycolate). Probably transfers a methyl group from the S-adenosylmethionine (SAM) cofactor and, subsequently or simultaneously, a water molecule onto the double bound of ethylene substrates, leading to the formation of the hydroxylated product, at the distal position. Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) (taxid: 419947) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q79FX6|MMAA2_MYCTU Cyclopropane mycolic acid synthase MmaA2 OS=Mycobacterium tuberculosis GN=mmaA2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 72.4 bits (176), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 87/216 (40%), Gaps = 32/216 (14%)
Query: 29 NSLAQAHRNISYHYDLDED-------------------EDLKV--AQMRKHSLLIEKARV 67
N L ++ HYDL +D ED+ + AQ+ K L + K +
Sbjct: 3 NDLTPHFEDVQAHYDLSDDFFRLFLDPTQTYSCAHFEREDMTLEEAQIAKIDLALGKLGL 62
Query: 68 SKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCD 127
+L+IGCGWG + Q N G+TLS Q + + +E R+ L
Sbjct: 63 QPGMTLLDIGCGWGATMRRAIAQYDVNVVGLTLSKNQAAHVQKSFDEMDTPRDRRVLLAG 122
Query: 128 YRQLPKAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ-FSSTPDARYNEY 186
+ Q + DRI+S E GH+ ++F +L DG+L+L + + ++
Sbjct: 123 WEQF--NEPVDRIVSIGAFEHFGHDRHADFFARAHKILPPDGVLLLHTITGLTRQQMVDH 180
Query: 187 RLS--------SDFIKEYIFPGGCLPSLSRITSAMA 214
L FI IFPGG P++ + A
Sbjct: 181 GLPLTLWLARFLKFIATEIFPGGQPPTIEMVEEQSA 216
|
Catalyzes the conversion of a double bond to a cis cyclopropane ring at the distal position of an alpha mycolic acid via the transfer of a methylene group from S-adenosyl-L-methionine. MmaA2 also catalyzes the biosynthesis of the cis-cyclopropanated methoxymycolates. Cyclopropanated mycolic acids are key factors participating in cell envelope permeability, host immunomodulation and persistence. Mycobacterium tuberculosis (taxid: 1773) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 7 EC: 9 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 288 | ||||||
| 224099967 | 862 | predicted protein [Populus trichocarpa] | 0.965 | 0.322 | 0.631 | 1e-116 | |
| 224107479 | 866 | predicted protein [Populus trichocarpa] | 0.965 | 0.321 | 0.616 | 1e-114 | |
| 147791135 | 874 | hypothetical protein VITISV_025151 [Viti | 0.944 | 0.311 | 0.625 | 1e-112 | |
| 296083708 | 898 | unnamed protein product [Vitis vinifera] | 0.965 | 0.309 | 0.611 | 1e-112 | |
| 225433227 | 865 | PREDICTED: uncharacterized protein LOC10 | 0.965 | 0.321 | 0.611 | 1e-112 | |
| 296083705 | 881 | unnamed protein product [Vitis vinifera] | 0.965 | 0.315 | 0.605 | 1e-112 | |
| 359477758 | 865 | PREDICTED: uncharacterized protein LOC10 | 0.965 | 0.321 | 0.605 | 1e-112 | |
| 449458900 | 1611 | PREDICTED: uncharacterized protein LOC10 | 0.965 | 0.172 | 0.631 | 1e-112 | |
| 224107481 | 460 | predicted protein [Populus trichocarpa] | 0.979 | 0.613 | 0.592 | 1e-111 | |
| 255574945 | 372 | 2-heptaprenyl-1,4-naphthoquinone methylt | 0.961 | 0.744 | 0.604 | 1e-110 |
| >gi|224099967|ref|XP_002311690.1| predicted protein [Populus trichocarpa] gi|222851510|gb|EEE89057.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 423 bits (1087), Expect = e-116, Method: Compositional matrix adjust.
Identities = 216/342 (63%), Positives = 241/342 (70%), Gaps = 64/342 (18%)
Query: 1 ILITNRDLDALVSKVNQK----------------SYFLRHISRKNSLAQAHRNISYHYDL 44
ILI NRD + SK+N+K +F++HISR+N+L QA RNIS HYDL
Sbjct: 521 ILIVNRDANKSASKLNKKRGWWTPLLFTAGIASAKFFIQHISRQNTLTQARRNISRHYDL 580
Query: 45 D---------------------EDEDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTF 83
EDEDLK AQMRK SLLIEKAR+SK+HE+LEIGCGWGT
Sbjct: 581 SNELFALFLDETMTYSCGVFKTEDEDLKDAQMRKISLLIEKARISKDHEILEIGCGWGTL 640
Query: 84 AIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISC 143
AIE V++TGC YTGITLS EQ+KYAEMKV EAGLQD I +LCDYRQLPK KYDRIISC
Sbjct: 641 AIEAVQRTGCKYTGITLSEEQLKYAEMKVKEAGLQDRIAFHLCDYRQLPKTHKYDRIISC 700
Query: 144 EMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPDARYNEYRLSSDFIKEYIFPGGCL 203
EM+EAVGHEYMEE+FGCCES+LA++GLLVLQF S P+ RY+EYR SSDFIKEYIFPGGCL
Sbjct: 701 EMIEAVGHEYMEEFFGCCESVLAENGLLVLQFISIPEERYDEYRQSSDFIKEYIFPGGCL 760
Query: 204 PSLSRITSAMAAASSLS---------------------------KILALGFNEKFIWTWE 236
PSL+RITSAMAA+S L KILALGFNEKFI TWE
Sbjct: 761 PSLTRITSAMAASSRLCVEHVENIGIHYYQTLKYWRKNFLEKQRKILALGFNEKFIRTWE 820
Query: 237 YYFDYSAAGFKPRTLGNYQIVLSRPGNVSVFSNPYKGFPSAY 278
YYFDY AAGFK TLGNYQ+V SRPGNV SNPYK FPSAY
Sbjct: 821 YYFDYCAAGFKTHTLGNYQVVFSRPGNVVALSNPYKSFPSAY 862
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224107479|ref|XP_002314493.1| predicted protein [Populus trichocarpa] gi|222863533|gb|EEF00664.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust.
Identities = 211/342 (61%), Positives = 242/342 (70%), Gaps = 64/342 (18%)
Query: 1 ILITNRDLDALVSKVNQK----------------SYFLRHISRKNSLAQAHRNISYHYDL 44
ILI NRD D SK+N+K +F++H+SR+N+L QA RNIS HYDL
Sbjct: 525 ILIVNRDADNSTSKLNKKRGWWTPLLFTAGIASAKFFIQHVSRQNTLTQARRNISRHYDL 584
Query: 45 D---------------------EDEDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTF 83
EDEDLK AQ+RK SLLIEKARV+K+HEVLEIGCGWGT
Sbjct: 585 SNELFALFLDETMTYSCALFKKEDEDLKAAQIRKISLLIEKARVNKDHEVLEIGCGWGTL 644
Query: 84 AIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISC 143
AIEVV++TGC YTGITLS EQ+KYAE+KV EAGLQD I+ +LCDYRQLPK KYD IISC
Sbjct: 645 AIEVVQRTGCKYTGITLSEEQLKYAELKVKEAGLQDSIKFHLCDYRQLPKTHKYDTIISC 704
Query: 144 EMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPDARYNEYRLSSDFIKEYIFPGGCL 203
EM+EAVGHEYMEE+FGCCES+LA++GL VLQF S P+ RY+EYR SSDFIKEYIFPGGCL
Sbjct: 705 EMIEAVGHEYMEEFFGCCESVLAENGLFVLQFISIPEERYDEYRKSSDFIKEYIFPGGCL 764
Query: 204 PSLSRITSAMAAASSLS---------------------------KILALGFNEKFIWTWE 236
PSL+RITSAMA++S L +IL+LGFNEKFI TWE
Sbjct: 765 PSLTRITSAMASSSRLCVEHVENIGIQYYQTLRYWRKNFLENQREILSLGFNEKFIRTWE 824
Query: 237 YYFDYSAAGFKPRTLGNYQIVLSRPGNVSVFSNPYKGFPSAY 278
YYFDY AAGFK TLGNYQ+V SRPGNV SNPY+GFPSAY
Sbjct: 825 YYFDYCAAGFKTHTLGNYQVVFSRPGNVVALSNPYRGFPSAY 866
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147791135|emb|CAN68017.1| hypothetical protein VITISV_025151 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust.
Identities = 210/336 (62%), Positives = 236/336 (70%), Gaps = 64/336 (19%)
Query: 1 ILITNRDLDALVSKVNQK----------------SYFLRHISRKNSLAQAHRNISYHYDL 44
I I NRDLD+ +S++N K YF +H+SR+N+L QA RNIS HYDL
Sbjct: 511 IFIANRDLDSSLSRLNNKRGWWTPLFFTAGIASAKYFFQHVSRQNTLTQARRNISRHYDL 570
Query: 45 D---------------------EDEDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTF 83
E EDLKVAQ+RK SLLIEK R+ K+HEVLEIGCGWG+
Sbjct: 571 SNELFSLFLDETMTYSCAVFKTEREDLKVAQLRKISLLIEKVRIDKKHEVLEIGCGWGSL 630
Query: 84 AIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISC 143
AIEVV+QTGC YTGITLS EQ+K+AEMKV EAGLQD+IR LCDYRQL + KYDRIISC
Sbjct: 631 AIEVVKQTGCKYTGITLSEEQLKFAEMKVKEAGLQDNIRFLLCDYRQLSDSYKYDRIISC 690
Query: 144 EMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPDARYNEYRLSSDFIKEYIFPGGCL 203
EM+EAVGHEYMEE+FGCCES+LA+DGLLVLQF S PD RY+EYR SSDFIKEYIFPGGCL
Sbjct: 691 EMLEAVGHEYMEEFFGCCESVLAEDGLLVLQFISIPDERYDEYRRSSDFIKEYIFPGGCL 750
Query: 204 PSLSRITSAMAAASSL---------------------------SKILALGFNEKFIWTWE 236
PSLSR+T+AMAAAS L SKI+ LGFNEKFI TWE
Sbjct: 751 PSLSRVTTAMAAASRLCMEHLENIGIHYYQTLRHWRKNFLENQSKIIELGFNEKFIRTWE 810
Query: 237 YYFDYSAAGFKPRTLGNYQIVLSRPGNVSVFSNPYK 272
YYFDY AAGFK TLGNYQIV SRPGN + FSNPYK
Sbjct: 811 YYFDYCAAGFKTHTLGNYQIVFSRPGNAAAFSNPYK 846
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296083708|emb|CBI23697.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust.
Identities = 209/342 (61%), Positives = 238/342 (69%), Gaps = 64/342 (18%)
Query: 1 ILITNRDLDALVSKVNQKS----------------YFLRHISRKNSLAQAHRNISYHYDL 44
I I NRDLD+ +S++N K YF +H+SR+N+L QA RNIS HYDL
Sbjct: 557 IFIANRDLDSSLSRLNNKRGWWTPLFFTAGIASARYFFQHVSRQNTLTQARRNISRHYDL 616
Query: 45 D---------------------EDEDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTF 83
E EDLKVAQ+RK SLLIEK R+ K+HEVLEIGCGWG+
Sbjct: 617 SNELFSLFLDETMTYSCAVFKTEGEDLKVAQLRKISLLIEKVRIDKKHEVLEIGCGWGSL 676
Query: 84 AIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISC 143
AIEVV++TGC YTGITLS EQ+K+AEMKV EAGLQD+IR LCDYRQL + KYDRIISC
Sbjct: 677 AIEVVKRTGCKYTGITLSEEQLKFAEMKVKEAGLQDNIRFLLCDYRQLSDSYKYDRIISC 736
Query: 144 EMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPDARYNEYRLSSDFIKEYIFPGGCL 203
EM+EAVGHEYMEE+FGCCES+LA+DGLLVLQF S PD RY+EYR SSDFIKEYIFPGGCL
Sbjct: 737 EMLEAVGHEYMEEFFGCCESVLAEDGLLVLQFISIPDERYDEYRRSSDFIKEYIFPGGCL 796
Query: 204 PSLSRITSAMAAASSL---------------------------SKILALGFNEKFIWTWE 236
PSLSR+T+AMAA+S L SKI+ LGFNEKFI TWE
Sbjct: 797 PSLSRVTTAMAASSRLCMEHLENIGIHYYQTLRHWRKNFLENQSKIIELGFNEKFIRTWE 856
Query: 237 YYFDYSAAGFKPRTLGNYQIVLSRPGNVSVFSNPYKGFPSAY 278
YYFDY AAGFK TLGNYQIV SRPGN + FSNPY+ S Y
Sbjct: 857 YYFDYCAAGFKTHTLGNYQIVFSRPGNAAAFSNPYESVVSTY 898
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225433227|ref|XP_002281958.1| PREDICTED: uncharacterized protein LOC100249441 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 409 bits (1052), Expect = e-112, Method: Compositional matrix adjust.
Identities = 209/342 (61%), Positives = 238/342 (69%), Gaps = 64/342 (18%)
Query: 1 ILITNRDLDALVSKVNQKS----------------YFLRHISRKNSLAQAHRNISYHYDL 44
I I NRDLD+ +S++N K YF +H+SR+N+L QA RNIS HYDL
Sbjct: 524 IFIANRDLDSSLSRLNNKRGWWTPLFFTAGIASARYFFQHVSRQNTLTQARRNISRHYDL 583
Query: 45 D---------------------EDEDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTF 83
E EDLKVAQ+RK SLLIEK R+ K+HEVLEIGCGWG+
Sbjct: 584 SNELFSLFLDETMTYSCAVFKTEGEDLKVAQLRKISLLIEKVRIDKKHEVLEIGCGWGSL 643
Query: 84 AIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISC 143
AIEVV++TGC YTGITLS EQ+K+AEMKV EAGLQD+IR LCDYRQL + KYDRIISC
Sbjct: 644 AIEVVKRTGCKYTGITLSEEQLKFAEMKVKEAGLQDNIRFLLCDYRQLSDSYKYDRIISC 703
Query: 144 EMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPDARYNEYRLSSDFIKEYIFPGGCL 203
EM+EAVGHEYMEE+FGCCES+LA+DGLLVLQF S PD RY+EYR SSDFIKEYIFPGGCL
Sbjct: 704 EMLEAVGHEYMEEFFGCCESVLAEDGLLVLQFISIPDERYDEYRRSSDFIKEYIFPGGCL 763
Query: 204 PSLSRITSAMAAASSL---------------------------SKILALGFNEKFIWTWE 236
PSLSR+T+AMAA+S L SKI+ LGFNEKFI TWE
Sbjct: 764 PSLSRVTTAMAASSRLCMEHLENIGIHYYQTLRHWRKNFLENQSKIIELGFNEKFIRTWE 823
Query: 237 YYFDYSAAGFKPRTLGNYQIVLSRPGNVSVFSNPYKGFPSAY 278
YYFDY AAGFK TLGNYQIV SRPGN + FSNPY+ S Y
Sbjct: 824 YYFDYCAAGFKTHTLGNYQIVFSRPGNAAAFSNPYESVVSTY 865
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296083705|emb|CBI23694.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 409 bits (1052), Expect = e-112, Method: Compositional matrix adjust.
Identities = 207/342 (60%), Positives = 239/342 (69%), Gaps = 64/342 (18%)
Query: 1 ILITNRDLDALVSKVNQK----------------SYFLRHISRKNSLAQAHRNISYHYDL 44
I I NRDLD+ +S++N+K Y+ +H+SR+N+L QA RN+S HYDL
Sbjct: 540 IFIANRDLDSSLSRLNKKRGWWTPLFFTAGIASAKYYFQHVSRQNTLTQARRNVSRHYDL 599
Query: 45 D---------------------EDEDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTF 83
E EDLKVAQ+RK SLLIEKAR+ K+HEVLEIGCGWG+
Sbjct: 600 SNELFSLFLDETMTYSCAVFKTEGEDLKVAQLRKISLLIEKARIDKKHEVLEIGCGWGSL 659
Query: 84 AIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISC 143
AIEVV+QTGC YTGIT S EQ+K+AEMKV EAGLQD+IR LCDYRQLP + KYDRIISC
Sbjct: 660 AIEVVKQTGCKYTGITPSKEQLKFAEMKVKEAGLQDNIRFLLCDYRQLPNSYKYDRIISC 719
Query: 144 EMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPDARYNEYRLSSDFIKEYIFPGGCL 203
M+E+VGHEYMEE+FGCCES+LA+DGLLVLQF S PD RY+EYR SSDFIKEYIFPGGCL
Sbjct: 720 GMLESVGHEYMEEFFGCCESVLAEDGLLVLQFISIPDERYDEYRRSSDFIKEYIFPGGCL 779
Query: 204 PSLSRITSAMAAASSL---------------------------SKILALGFNEKFIWTWE 236
PSLSR+T+AMA AS L SKI+ LGFNEKFI TWE
Sbjct: 780 PSLSRVTTAMATASRLCVEHLENIGIHYYQTLRHWRKNFLENQSKIIELGFNEKFIRTWE 839
Query: 237 YYFDYSAAGFKPRTLGNYQIVLSRPGNVSVFSNPYKGFPSAY 278
YYFDY AAGFK RTLG+YQIV SRPGN + FS+PYK S Y
Sbjct: 840 YYFDYCAAGFKTRTLGDYQIVFSRPGNATAFSDPYKSVVSPY 881
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359477758|ref|XP_002281923.2| PREDICTED: uncharacterized protein LOC100242555 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 409 bits (1052), Expect = e-112, Method: Compositional matrix adjust.
Identities = 207/342 (60%), Positives = 239/342 (69%), Gaps = 64/342 (18%)
Query: 1 ILITNRDLDALVSKVNQK----------------SYFLRHISRKNSLAQAHRNISYHYDL 44
I I NRDLD+ +S++N+K Y+ +H+SR+N+L QA RN+S HYDL
Sbjct: 524 IFIANRDLDSSLSRLNKKRGWWTPLFFTAGIASAKYYFQHVSRQNTLTQARRNVSRHYDL 583
Query: 45 D---------------------EDEDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTF 83
E EDLKVAQ+RK SLLIEKAR+ K+HEVLEIGCGWG+
Sbjct: 584 SNELFSLFLDETMTYSCAVFKTEGEDLKVAQLRKISLLIEKARIDKKHEVLEIGCGWGSL 643
Query: 84 AIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISC 143
AIEVV+QTGC YTGIT S EQ+K+AEMKV EAGLQD+IR LCDYRQLP + KYDRIISC
Sbjct: 644 AIEVVKQTGCKYTGITPSKEQLKFAEMKVKEAGLQDNIRFLLCDYRQLPNSYKYDRIISC 703
Query: 144 EMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPDARYNEYRLSSDFIKEYIFPGGCL 203
M+E+VGHEYMEE+FGCCES+LA+DGLLVLQF S PD RY+EYR SSDFIKEYIFPGGCL
Sbjct: 704 GMLESVGHEYMEEFFGCCESVLAEDGLLVLQFISIPDERYDEYRRSSDFIKEYIFPGGCL 763
Query: 204 PSLSRITSAMAAASSL---------------------------SKILALGFNEKFIWTWE 236
PSLSR+T+AMA AS L SKI+ LGFNEKFI TWE
Sbjct: 764 PSLSRVTTAMATASRLCVEHLENIGIHYYQTLRHWRKNFLENQSKIIELGFNEKFIRTWE 823
Query: 237 YYFDYSAAGFKPRTLGNYQIVLSRPGNVSVFSNPYKGFPSAY 278
YYFDY AAGFK RTLG+YQIV SRPGN + FS+PYK S Y
Sbjct: 824 YYFDYCAAGFKTRTLGDYQIVFSRPGNATAFSDPYKSVVSPY 865
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449458900|ref|XP_004147184.1| PREDICTED: uncharacterized protein LOC101213850 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 409 bits (1051), Expect = e-112, Method: Compositional matrix adjust.
Identities = 199/315 (63%), Positives = 235/315 (74%), Gaps = 37/315 (11%)
Query: 1 ILITNRDLDALVSKVNQK----------------SYFLRHISRKNSLAQAHRNISYHYDL 44
I+I +RD ++ ++K +K YF +H SR+N+L QA RNIS HYDL
Sbjct: 1297 IIIASRDTNSSIAKQKKKRGWWTPPLFTACIASAKYFFQHASRQNTLTQARRNISRHYDL 1356
Query: 45 D---------------------EDEDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTF 83
E+EDLKVAQMRK SLLIEKAR++K H VLEIGCGWG+
Sbjct: 1357 SNELFSLFLDDTMTYSCAIFKGENEDLKVAQMRKISLLIEKARINKNHHVLEIGCGWGSL 1416
Query: 84 AIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISC 143
AIE+V++TGC+YTGITLS EQ+KYAE +V +A LQD IR LCDYR+LP +KYDRIISC
Sbjct: 1417 AIEIVKKTGCHYTGITLSEEQLKYAEKRVKDANLQDRIRFLLCDYRKLPSTEKYDRIISC 1476
Query: 144 EMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPDARYNEYRLSSDFIKEYIFPGGCL 203
EM+EAVGHE+ME++FG CES+LA++GL VLQF S PD RYNEYRLSSDFIKEYIFPGGCL
Sbjct: 1477 EMIEAVGHEFMEDFFGSCESVLAENGLFVLQFISIPDERYNEYRLSSDFIKEYIFPGGCL 1536
Query: 204 PSLSRITSAMAAASSLSKILALGFNEKFIWTWEYYFDYSAAGFKPRTLGNYQIVLSRPGN 263
P LSR+T+AMA AS L KIL LGF+E FI TWEYYFDY AAGFK TLGNYQIV SRPGN
Sbjct: 1537 PCLSRLTTAMANASRLCKILQLGFDESFIRTWEYYFDYCAAGFKSHTLGNYQIVYSRPGN 1596
Query: 264 VSVFSNPYKGFPSAY 278
V+ F+NPY+G PSAY
Sbjct: 1597 VAAFTNPYQGIPSAY 1611
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224107481|ref|XP_002314494.1| predicted protein [Populus trichocarpa] gi|222863534|gb|EEF00665.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 205/346 (59%), Positives = 238/346 (68%), Gaps = 64/346 (18%)
Query: 1 ILITNRDLDALVSKVNQK----------------SYFLRHISRKNSLAQAHRNISYHYDL 44
+LI NRD + +S+ +K +FL+H+ R+N+L QA RNIS HYDL
Sbjct: 115 VLIANRDANRSISQAKRKRGWWTPSLFTAGIASAKFFLQHVLRQNTLTQARRNISRHYDL 174
Query: 45 D---------------------EDEDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTF 83
EDEDL AQ+RK S+LIEKAR+ K+HE+L+IGCGWGTF
Sbjct: 175 SNEVFSLFLGETMAYSSAIFKTEDEDLNTAQLRKISVLIEKARIDKKHEILDIGCGWGTF 234
Query: 84 AIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISC 143
AIEVV+QTGC YTG+TLS EQ+KYAEMKV EAGLQD+IRL LCDYR+LPK KYDRI+SC
Sbjct: 235 AIEVVKQTGCKYTGLTLSVEQLKYAEMKVKEAGLQDNIRLLLCDYRELPKGYKYDRIVSC 294
Query: 144 EMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPDARYNEYRLSSDFIKEYIFPGGCL 203
EM+E VGHEYME++F CES LA+DGLLVLQF S D RY+EYR SSDFIKEYIFPGGCL
Sbjct: 295 EMIEHVGHEYMEDFFSSCESALAEDGLLVLQFISIADERYDEYRRSSDFIKEYIFPGGCL 354
Query: 204 PSLSRITSAMAAASSL---------------------------SKILALGFNEKFIWTWE 236
PSLSRITSAM AS L SKILA+GF+EKFI TWE
Sbjct: 355 PSLSRITSAMGVASRLCVEHVENIGSHYYHTLRRWRKNFLENKSKILAMGFDEKFIRTWE 414
Query: 237 YYFDYSAAGFKPRTLGNYQIVLSRPGNVSVFSNPYKGFPSAYHQIL 282
YYFDYS+AGFK TLG+YQ+V SRPGNV NPYKGFPSAY +L
Sbjct: 415 YYFDYSSAGFKSYTLGDYQVVFSRPGNVEALGNPYKGFPSAYQHLL 460
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255574945|ref|XP_002528379.1| 2-heptaprenyl-1,4-naphthoquinone methyltransferase, putative [Ricinus communis] gi|223532247|gb|EEF34051.1| 2-heptaprenyl-1,4-naphthoquinone methyltransferase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust.
Identities = 206/341 (60%), Positives = 234/341 (68%), Gaps = 64/341 (18%)
Query: 1 ILITNRDLDALVSKVNQKS----------------YFLRHISRKNSLAQAHRNISYHYDL 44
+LI NRD + VS+ N+K +F RH+SRKNSL QA RNIS HYDL
Sbjct: 32 VLIANRDANISVSERNKKKGWWTPMFLTASIASAKFFFRHVSRKNSLTQARRNISRHYDL 91
Query: 45 D---------------------EDEDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTF 83
EDEDLK AQMRK SLLIEKAR++KEHEVLEIGCGWGT
Sbjct: 92 SNEMFSMFLDETMTYSCAVFKTEDEDLKSAQMRKISLLIEKARINKEHEVLEIGCGWGTL 151
Query: 84 AIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISC 143
AIEVV++TGC YTGITLS EQ+K+AE +V +AGLQ++IR LCDYRQLP K DRIISC
Sbjct: 152 AIEVVKRTGCKYTGITLSEEQLKFAEERVKQAGLQENIRFQLCDYRQLPDTYKCDRIISC 211
Query: 144 EMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPDARYNEYRLSSDFIKEYIFPGGCL 203
EM+EAVGHEYMEEYFGCCES+LA DGL+VLQF+S P+ RY EYR SSD IKEYIFPG C+
Sbjct: 212 EMLEAVGHEYMEEYFGCCESVLADDGLIVLQFTSIPEERYEEYRRSSDVIKEYIFPGTCV 271
Query: 204 PSLSRITSAMAAASSL---------------------------SKILALGFNEKFIWTWE 236
PSL+RIT AMAA++ L SKI ALGFNEKFI TWE
Sbjct: 272 PSLTRITIAMAASTRLCVEHVENIGMHYYQTLRLWRKNFLESKSKITALGFNEKFIRTWE 331
Query: 237 YYFDYSAAGFKPRTLGNYQIVLSRPGNVSVFSNPYKGFPSA 277
YYFDY AAGFK TLGNYQ+VLSRPGNV+ NPY FP+A
Sbjct: 332 YYFDYCAAGFKTLTLGNYQVVLSRPGNVAALGNPYNEFPAA 372
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 288 | ||||||
| TAIR|locus:2088712 | 867 | AT3G23510 [Arabidopsis thalian | 0.572 | 0.190 | 0.751 | 2.4e-96 | |
| TAIR|locus:2088070 | 867 | AT3G23530 [Arabidopsis thalian | 0.572 | 0.190 | 0.757 | 3e-96 | |
| TAIR|locus:2088717 | 461 | AT3G23470 [Arabidopsis thalian | 0.572 | 0.357 | 0.696 | 7.5e-86 | |
| DICTYBASE|DDB_G0283847 | 430 | DDB_G0283847 "cyclopropane fat | 0.670 | 0.448 | 0.442 | 6.8e-47 | |
| TIGR_CMR|GSU_2329 | 421 | GSU_2329 "cyclopropane-fatty-a | 0.541 | 0.370 | 0.412 | 4.7e-41 | |
| TIGR_CMR|CPS_1385 | 385 | CPS_1385 "cyclopropane-fatty-a | 0.565 | 0.423 | 0.375 | 9.4e-36 | |
| UNIPROTKB|Q9KSY4 | 432 | VC_1122 "Cyclopropane-fatty-ac | 0.552 | 0.368 | 0.416 | 3.9e-35 | |
| TIGR_CMR|VC_1122 | 432 | VC_1122 "cyclopropane-fatty-ac | 0.552 | 0.368 | 0.416 | 3.9e-35 | |
| TIGR_CMR|SPO_1918 | 404 | SPO_1918 "cyclopropane-fatty-a | 0.541 | 0.386 | 0.417 | 2.1e-32 | |
| TIGR_CMR|SO_3379 | 418 | SO_3379 "cyclopropane-fatty-ac | 0.819 | 0.564 | 0.360 | 9.8e-32 |
| TAIR|locus:2088712 AT3G23510 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 661 (237.7 bits), Expect = 2.4e-96, Sum P(3) = 2.4e-96
Identities = 124/165 (75%), Positives = 142/165 (86%)
Query: 46 EDEDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQM 105
+DEDL+ AQMRK SLLI+KAR+ K+HEVLEIGCGWGT AIEVVR+TGC YTGITLS EQ+
Sbjct: 605 DDEDLRTAQMRKISLLIDKARIEKDHEVLEIGCGWGTLAIEVVRRTGCKYTGITLSIEQL 664
Query: 106 KYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMMEAVGHEYMEEYFGCCESLL 165
KYAE KV EAGLQD I L DYRQL A KYDRIISCEM+EAVGHE+ME +F CE+ L
Sbjct: 665 KYAEEKVKEAGLQDRITFELRDYRQLSDAHKYDRIISCEMLEAVGHEFMEMFFSRCEAAL 724
Query: 166 AKDGLLVLQFSSTPDARYNEYRLSSDFIKEYIFPGGCLPSLSRIT 210
A+DGL+VLQF STP+ RYNEYRLSSDFIKEYIFPG C+PSL+++T
Sbjct: 725 AEDGLMVLQFISTPEERYNEYRLSSDFIKEYIFPGACVPSLAKVT 769
|
|
| TAIR|locus:2088070 AT3G23530 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 662 (238.1 bits), Expect = 3.0e-96, Sum P(3) = 3.0e-96
Identities = 125/165 (75%), Positives = 143/165 (86%)
Query: 46 EDEDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQM 105
+DEDL+ AQMRK SLLI+KAR+ K+HEVLEIGCGWGT AIEVVR+TGC YTGITLS EQ+
Sbjct: 605 DDEDLRTAQMRKISLLIDKARIEKDHEVLEIGCGWGTLAIEVVRRTGCKYTGITLSIEQL 664
Query: 106 KYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMMEAVGHEYMEEYFGCCESLL 165
KYAE KV EAGLQD I L DYRQL A+KYDRIISCEM+EAVGHE+ME +F CE+ L
Sbjct: 665 KYAEEKVKEAGLQDWITFELRDYRQLSDAQKYDRIISCEMLEAVGHEFMEMFFSRCEAAL 724
Query: 166 AKDGLLVLQFSSTPDARYNEYRLSSDFIKEYIFPGGCLPSLSRIT 210
A++GL+VLQF S P+ RYNEYRLSSDFIKEYIFPGGCLPSL+R+T
Sbjct: 725 AENGLIVLQFISIPEERYNEYRLSSDFIKEYIFPGGCLPSLARVT 769
|
|
| TAIR|locus:2088717 AT3G23470 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 631 (227.2 bits), Expect = 7.5e-86, Sum P(3) = 7.5e-86
Identities = 115/165 (69%), Positives = 140/165 (84%)
Query: 46 EDEDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQM 105
E+ED + AQMRK SLLIEKAR+ K HEVLE+GCGWGTFAIEVV++TGC YTGITLS EQ+
Sbjct: 197 ENEDPRTAQMRKISLLIEKARIEKNHEVLEMGCGWGTFAIEVVKRTGCKYTGITLSIEQL 256
Query: 106 KYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMMEAVGHEYMEEYFGCCESLL 165
KYA+ KV EAGLQ I LCDYRQL A+KYDRII+CEM+EAVGHE+M+++F CCE L
Sbjct: 257 KYAKAKVKEAGLQGRITFMLCDYRQLSDARKYDRIIACEMIEAVGHEFMDKFFSCCEDAL 316
Query: 166 AKDGLLVLQFSSTPDARYNEYRLSSDFIKEYIFPGGCLPSLSRIT 210
A++G+ VLQF++ P+A Y+E RL+S FI EYIFPGGCLPSL+R+T
Sbjct: 317 AENGIFVLQFTAIPEALYDESRLTSGFITEYIFPGGCLPSLARVT 361
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| DICTYBASE|DDB_G0283847 DDB_G0283847 "cyclopropane fatty acid synthase" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 413 (150.4 bits), Expect = 6.8e-47, Sum P(2) = 6.8e-47
Identities = 88/199 (44%), Positives = 124/199 (62%)
Query: 13 SKVNQKSYFLRHISRKNSLAQAHRNISYH--YDLDEDEDLKVAQMRKHSLLIEKARVSKE 70
SK N K+++ +S + +SY Y ++DL+ AQ K LI++A + K+
Sbjct: 145 SKENIKAHY--DLSNDMFKLFLDKTMSYSCAYFNHREQDLEEAQYNKIRKLIDQANLKKD 202
Query: 71 HEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQ 130
H +LEIGCGWG AIE V++TGC TGI+LS EQ+KY +V E GL+D I L DYR
Sbjct: 203 HHLLEIGCGWGALAIEAVKRTGCRVTGISLSQEQLKYGRERVKEEGLEDRIDLQYIDYRN 262
Query: 131 LPKAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPDARYNEYRLSS 190
+ ++D IISCEM+EAVG+E + YF E LL +G+LVLQF + D + +
Sbjct: 263 V--VGQFDSIISCEMLEAVGYENYKTYFQSVERLLKPNGVLVLQFITFKDQDFEGLKKRC 320
Query: 191 DFIKEYIFPGGCLPSLSRI 209
DFI++YIFPGG LPS++ +
Sbjct: 321 DFIQKYIFPGGLLPSITAV 339
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| TIGR_CMR|GSU_2329 GSU_2329 "cyclopropane-fatty-acyl-phospholipid synthase" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 321 (118.1 bits), Expect = 4.7e-41, Sum P(3) = 4.7e-41
Identities = 66/160 (41%), Positives = 90/160 (56%)
Query: 47 DEDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMK 106
D ++ A + K + + + E+LEIG GWG FAI GC T T+S Q
Sbjct: 174 DSTMEEASVAKFDRICRALHLRPDMELLEIGTGWGGFAIHAAEHYGCRVTTTTISRRQFS 233
Query: 107 YAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMMEAVGHEYMEEYFG-CCESLL 165
A ++ EAGL D I L DYR L ++DR++S EM+EAVGH ++ +F CC L
Sbjct: 234 LAAERIREAGLDDRITLLQRDYRDL--TGEFDRLVSIEMIEAVGHRHLPAFFAVCCRRLK 291
Query: 166 AKDGLLVLQFSSTPDARYNEYRLSSDFIKEYIFPGGCLPS 205
A DG+ ++Q + PD Y+ Y + DFI YIFPGGC PS
Sbjct: 292 A-DGMGLIQAITVPDRIYDRYLKTPDFINRYIFPGGCCPS 330
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| TIGR_CMR|CPS_1385 CPS_1385 "cyclopropane-fatty-acyl-phospholipid synthase" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 307 (113.1 bits), Expect = 9.4e-36, Sum P(3) = 9.4e-36
Identities = 62/165 (37%), Positives = 97/165 (58%)
Query: 46 EDEDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQM 105
ED L AQ K + + ++ +++ +LEIG GWG AI + GC T T+S Q
Sbjct: 146 EDASLDEAQQHKLATICQRLSLNEHDHLLEIGTGWGGLAIYAAQHYGCRVTTTTISDAQY 205
Query: 106 KYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMMEAVGHEYMEEYFGCCESLL 165
YA+ ++ + GL D I L DYR L +D+++S EM+EAVG++++ +F C L
Sbjct: 206 AYAQARIEKLGLTDKITLLKEDYRNLTGV--FDKVVSIEMIEAVGYDFLPSFFKQCNDRL 263
Query: 166 AKDGLLVLQFSSTPDARYNEYRLSSDFIKEYIFPGGCLPSLSRIT 210
G L++Q + D R++ Y+ + DFI+ YIFPGG LPS++ +T
Sbjct: 264 KVGGKLLIQSITIADQRFDYYKNNVDFIQRYIFPGGFLPSVNVLT 308
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| UNIPROTKB|Q9KSY4 VC_1122 "Cyclopropane-fatty-acyl-phospholipid synthase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
|---|
Score = 318 (117.0 bits), Expect = 3.9e-35, Sum P(2) = 3.9e-35
Identities = 67/161 (41%), Positives = 94/161 (58%)
Query: 50 LKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAE 109
L+ AQ K L E+ ++ VLEIG GWG AI + + GC T T+S EQ YA+
Sbjct: 196 LEQAQQAKMQRLCEQLQLKPTDHVLEIGTGWGAMAIYMAQHYGCKVTTTTISEEQYAYAQ 255
Query: 110 MKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDG 169
K+ GL + I L DYR L + +YD+++S EM+EAVG Y+ + C +LL G
Sbjct: 256 QKITALGLNNQITLLKQDYRLL--SGQYDKLVSIEMIEAVGKAYLPTFLSQCYALLKPRG 313
Query: 170 LLVLQFSSTPDARYNEYRLSSDFIKEYIFPGGCLPSLSRIT 210
+ +Q + D RY Y + DFI++YIFPGG LPS+S +T
Sbjct: 314 KMAIQAITIADQRYESYSNNVDFIQKYIFPGGFLPSISVLT 354
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| TIGR_CMR|VC_1122 VC_1122 "cyclopropane-fatty-acyl-phospholipid synthase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] | Back alignment and assigned GO terms |
|---|
Score = 318 (117.0 bits), Expect = 3.9e-35, Sum P(2) = 3.9e-35
Identities = 67/161 (41%), Positives = 94/161 (58%)
Query: 50 LKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAE 109
L+ AQ K L E+ ++ VLEIG GWG AI + + GC T T+S EQ YA+
Sbjct: 196 LEQAQQAKMQRLCEQLQLKPTDHVLEIGTGWGAMAIYMAQHYGCKVTTTTISEEQYAYAQ 255
Query: 110 MKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDG 169
K+ GL + I L DYR L + +YD+++S EM+EAVG Y+ + C +LL G
Sbjct: 256 QKITALGLNNQITLLKQDYRLL--SGQYDKLVSIEMIEAVGKAYLPTFLSQCYALLKPRG 313
Query: 170 LLVLQFSSTPDARYNEYRLSSDFIKEYIFPGGCLPSLSRIT 210
+ +Q + D RY Y + DFI++YIFPGG LPS+S +T
Sbjct: 314 KMAIQAITIADQRYESYSNNVDFIQKYIFPGGFLPSISVLT 354
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| TIGR_CMR|SPO_1918 SPO_1918 "cyclopropane-fatty-acyl-phospholipid synthase" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 312 (114.9 bits), Expect = 2.1e-32, Sum P(2) = 2.1e-32
Identities = 66/158 (41%), Positives = 88/158 (55%)
Query: 48 EDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKY 107
E L+ AQ K++ L+++ +LEIGCGWG FA RQ G TG+T+S EQ K+
Sbjct: 164 ESLEKAQEAKYASLLDEMGAQPGDHILEIGCGWGGFAEYAARQRGMRVTGLTISQEQFKF 223
Query: 108 AEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAK 167
A ++ +AGL D + L DYR + YD I S EM EAVG +Y YF + L
Sbjct: 224 ARERIEKAGLSDQVHFKLQDYRD--ETGSYDGIASIEMFEAVGEKYWPVYFDTVRARLKP 281
Query: 168 DGLLVLQFSSTPDARYNEYRLSSDFIKEYIFPGGCLPS 205
LQ + D R+ YR DFI++YIFPGG LP+
Sbjct: 282 GKRATLQIITVADRRWEIYRNGVDFIQKYIFPGGMLPA 319
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| TIGR_CMR|SO_3379 SO_3379 "cyclopropane-fatty-acyl-phospholipid synthase" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
Identities = 89/247 (36%), Positives = 124/247 (50%)
Query: 13 SKVNQKSYFLRHISRKNSLAQAH--RNISYHYDL--DEDEDLKVAQMRKHSLLIEKARVS 68
S+ K L H N+L + R + Y L + L AQ+ K + E+ +
Sbjct: 130 SQQGSKRNILAHYDLGNALYEQFLDREMLYSSALYPHSEASLADAQLHKLKTICERLDLK 189
Query: 69 KEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDY 128
+LEIG GWG AI + G + T T+S Q YA+ +V GL D + L DY
Sbjct: 190 PGQTLLEIGTGWGALAIYAAKNYGVHVTTTTISDAQYAYAKARVEREGLSDSVTLLTEDY 249
Query: 129 RQLPKAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPDARYNEYRL 188
R L + +YDR++S EM+EAVGHEY+ +F ESLL +G ++LQ + D RY+ YR
Sbjct: 250 RNL--SGQYDRLVSIEMIEAVGHEYLPGFFKKLESLLKPEGRMLLQAITISDQRYDSYRK 307
Query: 189 SSDFIKEYIFPGGCLPSLSRITXXXXXXXXXX--XXXXXGFN-EKFIWTWEYYFDYSAAG 245
S DFI+ YIFPGGCLPS+ ++ G + K + W FD S A
Sbjct: 308 SVDFIQRYIFPGGCLPSVQQMVGHLAKRTDMQVWSIDDMGLDYAKTLKDWHDNFDRSVAQ 367
Query: 246 FKPRTLG 252
+ TLG
Sbjct: 368 IQ--TLG 372
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.1.1 | 0.691 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | fgenesh4_pm.C_LG_VIII000723 | hypothetical protein (862 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | eugene3.100440002 | Predicted protein (291 aa) | • | • | • | 0.754 | |||||
 | eugene3.00110420 | hypothetical protein (305 aa) | • | • | 0.464 | ||||||
 | estExt_fgenesh4_pg.C_LG_XVIII0095 | hypothetical protein (355 aa) | • | • | • | 0.417 | |||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 288 | |||
| COG2230 | 283 | COG2230, Cfa, Cyclopropane fatty acid synthase and | 3e-59 | |
| pfam02353 | 273 | pfam02353, CMAS, Mycolic acid cyclopropane synthet | 1e-51 | |
| PRK11705 | 383 | PRK11705, PRK11705, cyclopropane fatty acyl phosph | 1e-37 | |
| cd02440 | 107 | cd02440, AdoMet_MTases, S-adenosylmethionine-depen | 4e-16 | |
| pfam12847 | 104 | pfam12847, Methyltransf_18, Methyltransferase doma | 2e-11 | |
| smart00828 | 224 | smart00828, PKS_MT, Methyltransferase in polyketid | 4e-09 | |
| pfam08241 | 92 | pfam08241, Methyltransf_11, Methyltransferase doma | 1e-08 | |
| TIGR01983 | 224 | TIGR01983, UbiG, ubiquinone biosynthesis O-methylt | 6e-08 | |
| COG2227 | 243 | COG2227, UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-m | 2e-07 | |
| pfam08242 | 98 | pfam08242, Methyltransf_12, Methyltransferase doma | 3e-07 | |
| pfam13489 | 154 | pfam13489, Methyltransf_23, Methyltransferase doma | 8e-06 | |
| pfam13659 | 117 | pfam13659, Methyltransf_26, Methyltransferase doma | 1e-05 | |
| PLN02244 | 340 | PLN02244, PLN02244, tocopherol O-methyltransferase | 3e-05 | |
| PRK05134 | 233 | PRK05134, PRK05134, bifunctional 3-demethylubiquin | 8e-04 | |
| pfam13847 | 151 | pfam13847, Methyltransf_31, Methyltransferase doma | 0.001 | |
| pfam13649 | 97 | pfam13649, Methyltransf_25, Methyltransferase doma | 0.001 | |
| COG4976 | 287 | COG4976, COG4976, Predicted methyltransferase (con | 0.002 | |
| pfam05401 | 201 | pfam05401, NodS, Nodulation protein S (NodS) | 0.003 | |
| COG2226 | 238 | COG2226, UbiE, Methylase involved in ubiquinone/me | 0.004 |
| >gnl|CDD|225139 COG2230, Cfa, Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 190 bits (484), Expect = 3e-59
Identities = 89/286 (31%), Positives = 133/286 (46%), Gaps = 51/286 (17%)
Query: 21 FLRHISRKNSLAQAHRNISYHYDL---------------------DEDEDLKVAQMRKHS 59
LR + ++S +A NI HYDL D D L+ AQ K
Sbjct: 3 MLRRLLNRHSKRRAAENIQAHYDLSNDFYRLFLDPSMTYSCAYFEDPDMTLEEAQRAKLD 62
Query: 60 LLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQD 119
L++EK + +L+IGCGWG AI + G G+TLS EQ+ YAE ++ GL+D
Sbjct: 63 LILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLED 122
Query: 120 HIRLYLCDYRQLPKAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTP 179
++ + L DYR + +DRI+S M E VG E +++F +LL G ++L + P
Sbjct: 123 NVEVRLQDYRDFE--EPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGP 180
Query: 180 DARYNEYRLSSDFIKEYIFPGGCLPSLSRITSAMAAAS-SLSKILALG------------ 226
D E+R DFI +YIFPGG LPS+S I + A + + +L
Sbjct: 181 D---QEFRRFPDFIDKYIFPGGELPSISEILELASEAGFVVLDVESLRPHYARTLRLWRE 237
Query: 227 ------------FNEKFIWTWEYYFDYSAAGFKPRTLGNYQIVLSR 260
++E+F WE Y AA F+ + +Q L++
Sbjct: 238 RFEANRDEAIALYDERFYRMWELYLAACAAAFRAGYIDVFQFTLTK 283
|
Length = 283 |
| >gnl|CDD|216988 pfam02353, CMAS, Mycolic acid cyclopropane synthetase | Back alignment and domain information |
|---|
Score = 170 bits (432), Expect = 1e-51
Identities = 77/276 (27%), Positives = 114/276 (41%), Gaps = 51/276 (18%)
Query: 29 NSLAQAHRNISYHYDL---------------------DEDEDLKVAQMRKHSLLIEKARV 67
+ + NI HYDL D L+ AQ K L+++K +
Sbjct: 1 HKKRRDFENIQAHYDLSNDFFALFLDPTMTYSCAYFERPDMTLEEAQQAKLDLILDKLGL 60
Query: 68 SKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCD 127
+L+IGCGWG + N G+TLS Q K+A +V GLQ + + L D
Sbjct: 61 KPGMTLLDIGCGWGGLMRRAAERYDVNVVGLTLSKNQYKHARQRVAAEGLQRKVEVLLQD 120
Query: 128 YRQLPKAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPDARYN-EY 186
YR + +DRI+S M E VGHE + +F +LL GL++L + E
Sbjct: 121 YRDFD--EPFDRIVSVGMFEHVGHENYDTFFKKLYNLLPPGGLMLLHTITGLHPDETSER 178
Query: 187 RLSSDFIKEYIFPGGCLPSLSRITSAMAAA--------------------------SSLS 220
L FI +YIFPGG LPS+S I + + A ++
Sbjct: 179 GLPLKFIDKYIFPGGELPSISMIVESSSEAGFTVEDVESLRPHYAKTLDLWAENLQANKD 238
Query: 221 KILALGFNEKFIWTWEYYFDYSAAGFKPRTLGNYQI 256
+ +AL +E+F W Y A F+ + +Q
Sbjct: 239 EAIAL-QSEEFYRMWMLYLTGCAVAFRIGYIDVHQF 273
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This family consist of Cyclopropane-fatty-acyl-phospholipid synthase or CFA synthase EC:2.1.1.79 this enzyme catalyze the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid <=> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. Length = 273 |
| >gnl|CDD|183282 PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Score = 136 bits (345), Expect = 1e-37
Identities = 84/272 (30%), Positives = 114/272 (41%), Gaps = 66/272 (24%)
Query: 41 HYDLDED--------------------EDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGW 80
HYDL D + L+ AQ K L+ K ++ VL+IGCGW
Sbjct: 119 HYDLGNDLFEAMLDPRMQYSCGYWKDADTLEEAQEAKLDLICRKLQLKPGMRVLDIGCGW 178
Query: 81 GTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRI 140
G A G + G+T+SAEQ K A+ + AGL IR L DYR L ++DRI
Sbjct: 179 GGLARYAAEHYGVSVVGVTISAEQQKLAQERC--AGLPVEIR--LQDYRDL--NGQFDRI 232
Query: 141 ISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ-FSSTPDARYNEYRLSSD-FIKEYIF 198
+S M E VG + YF L DGL +L S N+ + D +I +YIF
Sbjct: 233 VSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGS------NKTDTNVDPWINKYIF 286
Query: 199 PGGCLPSLSRITSAM----------------------------AAASSLSKILALGFNEK 230
P GCLPS+ +I A AA L+ ++E+
Sbjct: 287 PNGCLPSVRQIAQASEGLFVMEDWHNFGADYDRTLMAWHENFEAAWPELAD----NYSER 342
Query: 231 FIWTWEYYFDYSAAGFKPRTLGNYQIVLSRPG 262
F W YY A F+ R + +Q+V S G
Sbjct: 343 FYRMWRYYLLSCAGAFRARDIQLWQVVFSPRG 374
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Length = 383 |
| >gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Score = 72.5 bits (178), Expect = 4e-16
Identities = 30/105 (28%), Positives = 48/105 (45%), Gaps = 4/105 (3%)
Query: 73 VLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP 132
VL++GCG G A+ + G TG+ +S ++ A K A L D++ + D +LP
Sbjct: 2 VLDLGCGTGALALALASGPGARVTGVDISPVALELAR-KAAAALLADNVEVLKGDAEELP 60
Query: 133 KAK--KYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175
+D IIS + + E + + LL G+LVL
Sbjct: 61 PEADESFDVIISDPPLHHL-VEDLARFLEEARRLLKPGGVLVLTL 104
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107 |
| >gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 2e-11
Identities = 31/104 (29%), Positives = 42/104 (40%), Gaps = 8/104 (7%)
Query: 73 VLEIGCGWGTFAIEVVRQT-GCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQL 131
VL+IGCG G+ AIE+ R G TG+ LS E ++ A + + L I D
Sbjct: 5 VLDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELAR-ENAKLALGPRITFVQGDAPDA 63
Query: 132 PKAK-KYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174
+D + G + E SLL G LVL
Sbjct: 64 LDLLEGFDAVFIGG-----GGGDLLELLDALASLLKPGGRLVLN 102
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Protein in this family function as methyltransferases. Length = 104 |
| >gnl|CDD|214839 smart00828, PKS_MT, Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 4e-09
Identities = 31/124 (25%), Positives = 52/124 (41%), Gaps = 6/124 (4%)
Query: 73 VLEIGCGWGTFAIEVVRQTG-CNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQL 131
VL+ GCG+G+ I++ + G T+S EQ + ++ GLQ IR++ D +
Sbjct: 3 VLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKD 62
Query: 132 PKAKKYDRIISCEMMEAVGH-EYMEEYFGCCESLLAKDGLLVL-QFSSTPDARYNEYRLS 189
P YD + E + H + + F L G LVL F + + +
Sbjct: 63 PFPDTYDLVFGF---EVIHHIKDKMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETT 119
Query: 190 SDFI 193
S +
Sbjct: 120 SYLV 123
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Length = 224 |
| >gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 1e-08
Identities = 24/101 (23%), Positives = 42/101 (41%), Gaps = 10/101 (9%)
Query: 74 LEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP- 132
L++GCG G A + R+ G TG+ LS E + A + + + D LP
Sbjct: 1 LDVGCGTGLLAEALARRGGARVTGVDLSPEMLALARKRAP-------RKFVVGDAEDLPF 53
Query: 133 KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVL 173
+ +D ++S ++ + E +L G LV+
Sbjct: 54 PDESFDVVVSSLVLHHL--PDPERALREIARVLKPGGKLVI 92
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Members of this family are SAM dependent methyltransferases. Length = 92 |
| >gnl|CDD|233668 TIGR01983, UbiG, ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 6e-08
Identities = 30/122 (24%), Positives = 50/122 (40%), Gaps = 12/122 (9%)
Query: 54 QMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVN 113
+RK+ + RV L++GCG G + + R G N TGI S E ++ A++
Sbjct: 36 TIRKNKKPLFGLRV------LDVGCGGGLLSEPLARL-GANVTGIDASEENIEVAKLHAK 88
Query: 114 EAGLQDHIRLYLCDYRQLPKAKK--YDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLL 171
+ L I L + +D + E++E V + + C LL G+L
Sbjct: 89 KDPLLK-IEYRCTSVEDLAEKGAKSFDVVTCMEVLEHV--PDPQAFIRACAQLLKPGGIL 145
Query: 172 VL 173
Sbjct: 146 FF 147
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 224 |
| >gnl|CDD|225137 COG2227, UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 2e-07
Identities = 45/205 (21%), Positives = 76/205 (37%), Gaps = 41/205 (20%)
Query: 73 VLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQ-- 130
VL++GCG G + + R G + TGI S + ++ A++ E+G+ DYRQ
Sbjct: 63 VLDVGCGGGILSEPLARL-GASVTGIDASEKPIEVAKLHALESGVN-------IDYRQAT 114
Query: 131 ----LPKAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPDARYNEY 186
++D + E++E V E + C L+ G+L L ST + R +
Sbjct: 115 VEDLASAGGQFDVVTCMEVLEHVPDP--ESFLRACAKLVKPGGILFL---STIN-RTLKA 168
Query: 187 RLSSDFIKEYIFPGGCLPSLSRITSAMAAASSLS-KILALGFNEK---------FIWTWE 236
L + EY+ +P + + L +L +W+
Sbjct: 169 YLLAIIGAEYVL--RIVPKGTHDYRKFIKPAELIRWLLGANLKIIDRKGLTYNPLTNSWK 226
Query: 237 YYFDYSAAGFKPRTLGNYQIVLSRP 261
D S NY + RP
Sbjct: 227 LSNDVS---------VNYMVHAQRP 242
|
Length = 243 |
| >gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 3e-07
Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 6/101 (5%)
Query: 74 LEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDH--IRLYLCDYRQ 130
L+IGCG GT ++ G YTG+ +S ++ A ++ GL D +RL + D
Sbjct: 1 LDIGCGTGTLLRALLEALPGLEYTGVDISPAALEAAAERLAALGLLDAVRVRLDVLD-AI 59
Query: 131 LPKAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLL 171
+D +++ ++ + LL G+L
Sbjct: 60 DLDPGSFDVVVASNVLHHL--ADPRAVLRNLRRLLKPGGVL 98
|
Members of this family are SAM dependent methyltransferases. Length = 98 |
| >gnl|CDD|222171 pfam13489, Methyltransf_23, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 8e-06
Identities = 28/119 (23%), Positives = 41/119 (34%), Gaps = 20/119 (16%)
Query: 65 ARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLY 124
R+ VL+IGCG G + + G + TG+ S I
Sbjct: 18 PRLKPGGRVLDIGCGTGILLRLLRER-GFDVTGVDPSPA--------------AVLIFSL 62
Query: 125 LCDYRQLPKAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPDARY 183
A KYD I + E++E + LL G+L++ STP A
Sbjct: 63 FDAPDPAVLAGKYDLITAFEVLEHL--PDPPALLQQLRELLKPGGVLLI---STPLADD 116
|
This family appears to be a methyltransferase domain. Length = 154 |
| >gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 1e-05
Identities = 24/110 (21%), Positives = 41/110 (37%), Gaps = 9/110 (8%)
Query: 73 VLEIGCGWGTFAIEVVRQTG-CNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQL 131
VL+ G G G F + R G+ L E A ++ AGL +R+ + D R+L
Sbjct: 4 VLDPGAGSGAFLLAAARAGPDARVVGVELDPEAAALARRRLALAGLAPRVRVVVGDAREL 63
Query: 132 P--KAKKYDRIISC------EMMEAVGHEYMEEYFGCCESLLAKDGLLVL 173
+D ++ + + + LL G+LV+
Sbjct: 64 LELPDGSFDLVLGNPPYGPRAGDPKDNRDLYDRFLAAALRLLKPGGVLVV 113
|
This family contains methyltransferase domains. Length = 117 |
| >gnl|CDD|215135 PLN02244, PLN02244, tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 3e-05
Identities = 35/121 (28%), Positives = 54/121 (44%), Gaps = 18/121 (14%)
Query: 42 YDLDE-DEDLKVAQMRKHSLLIEK----ARVSKEHE-----VLEIGCGWGTFAIEVVRQT 91
YD D + AQ+R +IE+ A V + E ++++GCG G + + R+
Sbjct: 85 YDPGASRGDHRQAQIR----MIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKY 140
Query: 92 GCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAKKYDRIISCEMMEAVG 150
G N GITLS Q A GL D + + D P + ++D + S ME+
Sbjct: 141 GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWS---MESGE 197
Query: 151 H 151
H
Sbjct: 198 H 198
|
Length = 340 |
| >gnl|CDD|235350 PRK05134, PRK05134, bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 8e-04
Identities = 32/114 (28%), Positives = 49/114 (42%), Gaps = 20/114 (17%)
Query: 73 VLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQ-- 130
VL++GCG G + + R G + TGI S E ++ A + E+GL+ DYRQ
Sbjct: 52 VLDVGCGGGILSESMARL-GADVTGIDASEENIEVARLHALESGLK-------IDYRQTT 103
Query: 131 -----LPKAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTP 179
++D + EM+E V + C L+ GL+ ST
Sbjct: 104 AEELAAEHPGQFDVVTCMEMLEHV--PDPASFVRACAKLVKPGGLVFF---STL 152
|
Length = 233 |
| >gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 38.6 bits (90), Expect = 0.001
Identities = 23/108 (21%), Positives = 49/108 (45%), Gaps = 9/108 (8%)
Query: 73 VLEIGCGWGTFAIEVVRQTG--CNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQ 130
VL++GCG G + + G GI +S E ++ A+ + G +++ D +
Sbjct: 7 VLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAKENAKKLGY-ENVEFIQGDIEE 65
Query: 131 LPKAK----KYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174
LP+ + +D +IS E++ + ++ +L G+L++
Sbjct: 66 LPQLQLEDNSFDVVISNEVLNHLPD--PDKVLEEIIRVLKPGGVLIVS 111
|
This family appears to be have methyltransferase activity. Length = 151 |
| >gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 37.3 bits (87), Expect = 0.001
Identities = 19/72 (26%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Query: 73 VLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP 132
+L++GCG G + R + TG+ +S E ++ A+ ++ + G + +R + D R LP
Sbjct: 1 ILDLGCGTGRVLRALARAGPSSVTGVDISKEALELAKERLRDKGPK--VRFVVADARDLP 58
Query: 133 KAK-KYDRIISC 143
+ +D +I
Sbjct: 59 FEEGSFDLVICA 70
|
This family appears to be a methyltransferase domain. Length = 97 |
| >gnl|CDD|227310 COG4976, COG4976, Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Score = 38.6 bits (90), Expect = 0.002
Identities = 34/137 (24%), Positives = 56/137 (40%), Gaps = 20/137 (14%)
Query: 44 LDEDEDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAE 103
L +A+M I KA + +L++GCG G +R TG+ +S
Sbjct: 106 LGYSVPELLAEM------IGKADLGPFRRMLDLGCGTGLTGEA-LRDMADRLTGVDISEN 158
Query: 104 QMKYAEMKVNEAGLQDHIRLY---LCDYRQLPKAKKYDRIISCEMMEAVGHEYMEEYFGC 160
+ A E GL D LY + + +++D I++ +++ +G +E F
Sbjct: 159 MLAKAH----EKGLYDT--LYVAEAVLFLEDLTQERFDLIVAADVLPYLGA--LEGLFAG 210
Query: 161 CESLLAKDGLLVLQFSS 177
LLA GL FS
Sbjct: 211 AAGLLAPGGLFA--FSV 225
|
Length = 287 |
| >gnl|CDD|114142 pfam05401, NodS, Nodulation protein S (NodS) | Back alignment and domain information |
|---|
Score = 37.4 bits (87), Expect = 0.003
Identities = 32/112 (28%), Positives = 50/112 (44%), Gaps = 11/112 (9%)
Query: 73 VLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP 132
LE+GC G F E + T I + E + A +++ + HI + D +Q
Sbjct: 47 ALEVGCAAGAFT-ERLAPYCQRLTVIDVMPEAIARARLRMKKWS---HISWIVSDVQQFS 102
Query: 133 KAKKYDRIISCEMMEAVGHEYMEEYFGCCE---SLLAKDGLLVLQFSSTPDA 181
+ +D I+ E++ +G + E G S+LA DG LV F S DA
Sbjct: 103 TNELFDLIVVAEVLYYLGD--VAEMRGAVRNLVSMLAPDGQLV--FGSARDA 150
|
This family consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors. Length = 201 |
| >gnl|CDD|225136 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 37.6 bits (88), Expect = 0.004
Identities = 19/85 (22%), Positives = 38/85 (44%), Gaps = 3/85 (3%)
Query: 61 LIEKARVSKEHEVLEIGCGWGTFAIEVVRQTG-CNYTGITLSAEQMKYAEMKVNEAGLQD 119
LI + +VL++ CG G A+ + + G G+ +S ++ A K+ + G+Q+
Sbjct: 43 LISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQN 102
Query: 120 HIRLYLCDYRQLP-KAKKYDRIISC 143
+ + D LP +D +
Sbjct: 103 -VEFVVGDAENLPFPDNSFDAVTIS 126
|
Length = 238 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 288 | |||
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 100.0 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 100.0 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 100.0 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.92 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.92 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.91 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.9 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.86 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.85 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.85 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.84 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.84 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.84 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.83 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.82 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.82 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.81 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.8 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.8 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.79 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.79 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.78 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.78 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.78 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.78 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.77 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.77 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.77 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.77 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.75 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.75 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.74 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.73 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.73 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.73 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.73 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.73 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.72 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.72 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.71 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.71 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.71 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.71 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.71 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 99.71 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.71 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.71 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.7 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.68 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.68 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.68 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.68 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.67 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.66 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.66 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.65 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 99.65 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.65 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.64 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.63 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.63 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 99.62 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.62 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.6 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.6 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.6 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 99.6 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.6 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.6 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 99.59 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.58 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.58 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 99.57 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.57 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 99.57 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.56 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.56 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.55 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.55 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.55 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.55 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 99.54 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.54 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.54 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 99.54 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 99.54 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 99.52 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.52 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 99.5 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 99.5 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.5 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.5 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.5 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.49 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.49 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.48 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.47 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 99.47 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 99.46 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 99.46 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 99.46 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 99.45 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.45 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 99.44 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 99.43 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 99.43 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 99.43 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 99.42 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 99.42 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 99.42 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 99.41 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 99.4 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 99.4 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 99.4 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 99.39 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.39 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 99.38 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 99.38 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 99.38 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 99.37 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 99.37 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 99.37 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 99.37 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 99.37 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 99.36 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 99.36 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 99.35 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 99.35 | |
| PLN02476 | 278 | O-methyltransferase | 99.35 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 99.35 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 99.34 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 99.34 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 99.33 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 99.32 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 99.32 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 99.3 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 99.29 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 99.29 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 99.28 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 99.28 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 99.28 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 99.27 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 99.27 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 99.24 | |
| PLN02366 | 308 | spermidine synthase | 99.23 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 99.22 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 99.2 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 99.2 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 99.18 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 99.18 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 99.14 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 99.13 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 99.11 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 99.11 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 99.11 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 99.1 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 99.09 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 99.08 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 99.08 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 99.07 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 99.07 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 99.06 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 99.05 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 99.05 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 99.04 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 99.04 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 99.03 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 99.03 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 99.01 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 99.0 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 98.99 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 98.99 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 98.97 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 98.96 | |
| PLN02823 | 336 | spermine synthase | 98.95 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 98.95 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 98.95 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.95 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 98.95 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 98.94 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 98.94 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 98.93 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 98.92 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 98.91 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 98.91 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 98.9 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 98.89 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 98.88 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.88 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 98.84 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 98.84 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 98.84 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 98.83 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 98.83 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 98.81 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 98.8 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 98.78 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 98.76 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 98.76 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 98.76 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.75 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 98.74 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 98.74 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 98.73 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 98.72 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 98.71 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 98.7 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 98.66 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 98.66 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.65 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 98.64 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 98.64 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 98.62 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 98.61 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 98.61 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 98.58 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 98.57 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 98.57 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 98.57 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 98.55 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 98.52 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 98.51 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 98.45 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 98.45 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 98.45 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 98.44 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 98.4 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 98.37 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 98.36 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 98.34 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 98.33 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 98.31 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 98.29 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 98.28 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 98.22 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 98.2 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 98.2 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 98.16 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 98.16 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 98.15 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 98.14 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 98.09 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 98.07 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 98.04 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 98.02 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 97.97 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 97.94 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 97.93 | |
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 97.92 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 97.89 | |
| KOG4058 | 199 | consensus Uncharacterized conserved protein [Funct | 97.87 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 97.87 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 97.86 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 97.83 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 97.79 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 97.76 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 97.71 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 97.71 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 97.61 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 97.6 | |
| PF04445 | 234 | SAM_MT: Putative SAM-dependent methyltransferase; | 97.55 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 97.46 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 97.41 | |
| KOG1501 | 636 | consensus Arginine N-methyltransferase [General fu | 97.34 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 97.32 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 97.25 | |
| PF01795 | 310 | Methyltransf_5: MraW methylase family; InterPro: I | 97.09 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 97.09 | |
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltra | 97.07 | |
| COG3129 | 292 | Predicted SAM-dependent methyltransferase [General | 97.05 | |
| PF02005 | 377 | TRM: N2,N2-dimethylguanosine tRNA methyltransferas | 97.03 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 97.02 | |
| COG0286 | 489 | HsdM Type I restriction-modification system methyl | 96.99 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 96.83 | |
| KOG1596 | 317 | consensus Fibrillarin and related nucleolar RNA-bi | 96.83 | |
| TIGR00027 | 260 | mthyl_TIGR00027 methyltransferase, putative, TIGR0 | 96.8 | |
| KOG2198 | 375 | consensus tRNA cytosine-5-methylases and related e | 96.76 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 96.75 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 96.66 | |
| KOG3924 | 419 | consensus Putative protein methyltransferase invol | 96.62 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 96.58 | |
| KOG1562 | 337 | consensus Spermidine synthase [Amino acid transpor | 96.56 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 96.53 | |
| PF11599 | 246 | AviRa: RRNA methyltransferase AviRa; InterPro: IPR | 96.51 | |
| KOG0024 | 354 | consensus Sorbitol dehydrogenase [Secondary metabo | 96.46 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 96.34 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 96.33 | |
| PHA01634 | 156 | hypothetical protein | 96.29 | |
| COG1867 | 380 | TRM1 N2,N2-dimethylguanosine tRNA methyltransferas | 96.22 | |
| KOG1099 | 294 | consensus SAM-dependent methyltransferase/cell div | 96.22 | |
| KOG0822 | 649 | consensus Protein kinase inhibitor [Cell cycle con | 96.2 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 96.14 | |
| PF03269 | 177 | DUF268: Caenorhabditis protein of unknown function | 95.98 | |
| KOG2671 | 421 | consensus Putative RNA methylase [Replication, rec | 95.91 | |
| cd08254 | 338 | hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo | 95.9 | |
| KOG1227 | 351 | consensus Putative methyltransferase [General func | 95.86 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 95.86 | |
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 95.86 | |
| KOG2920 | 282 | consensus Predicted methyltransferase [General fun | 95.84 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 95.82 | |
| cd08239 | 339 | THR_DH_like L-threonine dehydrogenase (TDH)-like. | 95.79 | |
| COG4301 | 321 | Uncharacterized conserved protein [Function unknow | 95.78 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 95.74 | |
| KOG0023 | 360 | consensus Alcohol dehydrogenase, class V [Secondar | 95.69 | |
| COG1565 | 370 | Uncharacterized conserved protein [Function unknow | 95.67 | |
| cd08281 | 371 | liver_ADH_like1 Zinc-dependent alcohol dehydrogena | 95.66 | |
| PF02636 | 252 | Methyltransf_28: Putative S-adenosyl-L-methionine- | 95.64 | |
| KOG2651 | 476 | consensus rRNA adenine N-6-methyltransferase [RNA | 95.61 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 95.6 | |
| PF00107 | 130 | ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: | 95.58 | |
| COG3510 | 237 | CmcI Cephalosporin hydroxylase [Defense mechanisms | 95.57 | |
| PRK13699 | 227 | putative methylase; Provisional | 95.46 | |
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 95.46 | |
| PF01555 | 231 | N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th | 95.44 | |
| KOG1253 | 525 | consensus tRNA methyltransferase [Translation, rib | 95.42 | |
| PF05711 | 248 | TylF: Macrocin-O-methyltransferase (TylF); InterPr | 95.39 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 95.38 | |
| cd08237 | 341 | ribitol-5-phosphate_DH ribitol-5-phosphate dehydro | 95.26 | |
| COG3315 | 297 | O-Methyltransferase involved in polyketide biosynt | 95.15 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 95.06 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 94.96 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 94.78 | |
| COG0604 | 326 | Qor NADPH:quinone reductase and related Zn-depende | 94.68 | |
| PLN02740 | 381 | Alcohol dehydrogenase-like | 94.68 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 94.61 | |
| KOG2078 | 495 | consensus tRNA modification enzyme [RNA processing | 94.57 | |
| PF07279 | 218 | DUF1442: Protein of unknown function (DUF1442); In | 94.53 | |
| PLN03154 | 348 | putative allyl alcohol dehydrogenase; Provisional | 94.49 | |
| TIGR03201 | 349 | dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co | 94.34 | |
| PRK10309 | 347 | galactitol-1-phosphate dehydrogenase; Provisional | 94.26 | |
| TIGR01202 | 308 | bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl | 94.18 | |
| cd08232 | 339 | idonate-5-DH L-idonate 5-dehydrogenase. L-idonate | 94.11 | |
| COG1568 | 354 | Predicted methyltransferases [General function pre | 94.04 | |
| cd08238 | 410 | sorbose_phosphate_red L-sorbose-1-phosphate reduct | 94.03 | |
| cd08261 | 337 | Zn_ADH7 Alcohol dehydrogenases of the MDR family. | 93.94 | |
| PLN02827 | 378 | Alcohol dehydrogenase-like | 93.89 | |
| TIGR02825 | 325 | B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15 | 93.85 | |
| TIGR02818 | 368 | adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr | 93.8 | |
| cd08255 | 277 | 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_ | 93.79 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 93.71 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 93.7 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 93.65 | |
| PF11899 | 380 | DUF3419: Protein of unknown function (DUF3419); In | 93.58 | |
| cd08242 | 319 | MDR_like Medium chain dehydrogenases/reductase (MD | 93.47 | |
| PF10354 | 166 | DUF2431: Domain of unknown function (DUF2431); Int | 93.42 | |
| COG2933 | 358 | Predicted SAM-dependent methyltransferase [General | 93.41 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 93.4 | |
| cd08245 | 330 | CAD Cinnamyl alcohol dehydrogenases (CAD) and rela | 93.34 | |
| cd08294 | 329 | leukotriene_B4_DH_like 13-PGR is a bifunctional en | 93.29 | |
| cd08300 | 368 | alcohol_DH_class_III class III alcohol dehydrogena | 93.2 | |
| cd08233 | 351 | butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog | 93.16 | |
| cd08285 | 351 | NADP_ADH NADP(H)-dependent alcohol dehydrogenases. | 93.14 | |
| cd08236 | 343 | sugar_DH NAD(P)-dependent sugar dehydrogenases. Th | 93.08 | |
| COG1062 | 366 | AdhC Zn-dependent alcohol dehydrogenases, class II | 92.91 | |
| cd08277 | 365 | liver_alcohol_DH_like Liver alcohol dehydrogenase. | 92.82 | |
| KOG2912 | 419 | consensus Predicted DNA methylase [Function unknow | 92.8 | |
| cd05285 | 343 | sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a | 92.77 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 92.71 | |
| TIGR00936 | 406 | ahcY adenosylhomocysteinase. This enzyme hydrolyze | 92.55 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 92.4 | |
| cd08234 | 334 | threonine_DH_like L-threonine dehydrogenase. L-thr | 92.39 | |
| cd05278 | 347 | FDH_like Formaldehyde dehydrogenases. Formaldehyde | 92.35 | |
| cd08295 | 338 | double_bond_reductase_like Arabidopsis alkenal dou | 92.09 | |
| PLN02586 | 360 | probable cinnamyl alcohol dehydrogenase | 91.96 | |
| PF11899 | 380 | DUF3419: Protein of unknown function (DUF3419); In | 91.96 | |
| cd08301 | 369 | alcohol_DH_plants Plant alcohol dehydrogenase. NAD | 91.91 | |
| cd08293 | 345 | PTGR2 Prostaglandin reductase. Prostaglandins and | 91.85 | |
| PF03514 | 374 | GRAS: GRAS domain family; InterPro: IPR005202 Sequ | 91.83 | |
| cd08279 | 363 | Zn_ADH_class_III Class III alcohol dehydrogenase. | 91.82 | |
| cd08231 | 361 | MDR_TM0436_like Hypothetical enzyme TM0436 resembl | 91.77 | |
| TIGR02819 | 393 | fdhA_non_GSH formaldehyde dehydrogenase, glutathio | 91.48 | |
| cd08298 | 329 | CAD2 Cinnamyl alcohol dehydrogenases (CAD). These | 91.36 | |
| PF11312 | 315 | DUF3115: Protein of unknown function (DUF3115); In | 91.13 | |
| PF04072 | 183 | LCM: Leucine carboxyl methyltransferase; InterPro: | 91.09 | |
| cd08278 | 365 | benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be | 91.08 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 90.99 | |
| cd08296 | 333 | CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci | 90.97 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 90.86 | |
| PLN02494 | 477 | adenosylhomocysteinase | 90.82 | |
| PLN02514 | 357 | cinnamyl-alcohol dehydrogenase | 90.72 | |
| PF00145 | 335 | DNA_methylase: C-5 cytosine-specific DNA methylase | 90.57 | |
| PTZ00357 | 1072 | methyltransferase; Provisional | 90.56 | |
| cd08286 | 345 | FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-lik | 90.43 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 89.99 | |
| cd05281 | 341 | TDH Threonine dehydrogenase. L-threonine dehydroge | 89.99 | |
| PF12692 | 160 | Methyltransf_17: S-adenosyl-L-methionine methyltra | 89.97 | |
| KOG0821 | 326 | consensus Predicted ribosomal RNA adenine dimethyl | 89.89 | |
| PF05206 | 259 | TRM13: Methyltransferase TRM13; InterPro: IPR00787 | 89.83 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 89.66 | |
| PLN02178 | 375 | cinnamyl-alcohol dehydrogenase | 89.45 | |
| cd05279 | 365 | Zn_ADH1 Liver alcohol dehydrogenase and related zi | 89.43 | |
| KOG2539 | 491 | consensus Mitochondrial/chloroplast ribosome small | 89.2 | |
| COG5379 | 414 | BtaA S-adenosylmethionine:diacylglycerol 3-amino-3 | 88.91 | |
| cd08263 | 367 | Zn_ADH10 Alcohol dehydrogenases of the MDR family. | 88.89 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 88.86 | |
| cd05283 | 337 | CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam | 88.83 | |
| cd08265 | 384 | Zn_ADH3 Alcohol dehydrogenases of the MDR family. | 88.8 | |
| cd08287 | 345 | FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-lik | 88.79 | |
| PRK10083 | 339 | putative oxidoreductase; Provisional | 88.78 | |
| cd08235 | 343 | iditol_2_DH_like L-iditol 2-dehydrogenase. Putativ | 88.66 | |
| TIGR00675 | 315 | dcm DNA-methyltransferase (dcm). All proteins in t | 88.59 | |
| COG1255 | 129 | Uncharacterized protein conserved in archaea [Func | 88.46 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 88.09 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 88.06 | |
| cd08241 | 323 | QOR1 Quinone oxidoreductase (QOR). QOR catalyzes t | 88.05 | |
| COG0287 | 279 | TyrA Prephenate dehydrogenase [Amino acid transpor | 87.98 | |
| TIGR00692 | 340 | tdh L-threonine 3-dehydrogenase. E. coli His-90 mo | 87.94 | |
| cd05284 | 340 | arabinose_DH_like D-arabinose dehydrogenase. This | 87.91 | |
| PF05050 | 167 | Methyltransf_21: Methyltransferase FkbM domain; In | 87.82 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 87.71 | |
| PF10237 | 162 | N6-adenineMlase: Probable N6-adenine methyltransfe | 87.54 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 87.47 | |
| PRK06035 | 291 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 87.43 | |
| cd08284 | 344 | FDH_like_2 Glutathione-dependent formaldehyde dehy | 87.34 | |
| PRK13699 | 227 | putative methylase; Provisional | 87.31 | |
| PRK05808 | 282 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 87.19 | |
| PRK03562 | 621 | glutathione-regulated potassium-efflux system prot | 87.16 | |
| cd08260 | 345 | Zn_ADH6 Alcohol dehydrogenases of the MDR family. | 87.03 | |
| PTZ00075 | 476 | Adenosylhomocysteinase; Provisional | 86.97 | |
| cd08269 | 312 | Zn_ADH9 Alcohol dehydrogenases of the MDR family. | 86.96 | |
| PRK07530 | 292 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 86.87 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 86.85 | |
| cd08240 | 350 | 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehy | 86.53 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 86.33 | |
| COG4017 | 254 | Uncharacterized protein conserved in archaea [Func | 86.26 | |
| PRK07533 | 258 | enoyl-(acyl carrier protein) reductase; Provisiona | 86.19 | |
| KOG1201 | 300 | consensus Hydroxysteroid 17-beta dehydrogenase 11 | 86.15 | |
| KOG0022 | 375 | consensus Alcohol dehydrogenase, class III [Second | 86.07 | |
| cd08266 | 342 | Zn_ADH_like1 Alcohol dehydrogenases of the MDR fam | 85.5 | |
| cd08291 | 324 | ETR_like_1 2-enoyl thioester reductase (ETR) like | 85.44 | |
| PRK05396 | 341 | tdh L-threonine 3-dehydrogenase; Validated | 85.11 | |
| PRK10669 | 558 | putative cation:proton antiport protein; Provision | 84.99 | |
| cd08274 | 350 | MDR9 Medium chain dehydrogenases/reductase (MDR)/z | 84.89 | |
| KOG1098 | 780 | consensus Putative SAM-dependent rRNA methyltransf | 84.88 | |
| PF03686 | 127 | UPF0146: Uncharacterised protein family (UPF0146); | 84.88 | |
| PRK12939 | 250 | short chain dehydrogenase; Provisional | 84.83 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 84.59 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 84.45 | |
| COG0270 | 328 | Dcm Site-specific DNA methylase [DNA replication, | 84.36 | |
| TIGR02441 | 737 | fa_ox_alpha_mit fatty acid oxidation complex, alph | 84.16 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 84.08 | |
| cd08243 | 320 | quinone_oxidoreductase_like_1 Quinone oxidoreducta | 83.94 | |
| PRK06522 | 304 | 2-dehydropantoate 2-reductase; Reviewed | 83.83 | |
| KOG2782 | 303 | consensus Putative SAM dependent methyltransferase | 83.55 | |
| PRK10458 | 467 | DNA cytosine methylase; Provisional | 83.54 | |
| PLN03209 | 576 | translocon at the inner envelope of chloroplast su | 83.53 | |
| PRK07814 | 263 | short chain dehydrogenase; Provisional | 83.5 | |
| PRK08213 | 259 | gluconate 5-dehydrogenase; Provisional | 83.45 | |
| PF02153 | 258 | PDH: Prephenate dehydrogenase; InterPro: IPR003099 | 83.41 | |
| TIGR02437 | 714 | FadB fatty oxidation complex, alpha subunit FadB. | 83.39 | |
| PLN02702 | 364 | L-idonate 5-dehydrogenase | 83.13 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 83.12 | |
| cd05286 | 320 | QOR2 Quinone oxidoreductase (QOR). Quinone oxidore | 83.06 | |
| cd08270 | 305 | MDR4 Medium chain dehydrogenases/reductase (MDR)/z | 82.84 | |
| PRK05708 | 305 | 2-dehydropantoate 2-reductase; Provisional | 82.68 | |
| PRK11154 | 708 | fadJ multifunctional fatty acid oxidation complex | 82.68 | |
| cd08282 | 375 | PFDH_like Pseudomonas putida aldehyde-dismutating | 82.67 | |
| COG0863 | 302 | DNA modification methylase [DNA replication, recom | 82.22 | |
| KOG1197 | 336 | consensus Predicted quinone oxidoreductase [Energy | 82.03 | |
| cd08267 | 319 | MDR1 Medium chain dehydrogenases/reductase (MDR)/z | 81.98 | |
| PLN02545 | 295 | 3-hydroxybutyryl-CoA dehydrogenase | 81.86 | |
| PRK11730 | 715 | fadB multifunctional fatty acid oxidation complex | 81.58 | |
| PRK09422 | 338 | ethanol-active dehydrogenase/acetaldehyde-active r | 81.55 | |
| cd08297 | 341 | CAD3 Cinnamyl alcohol dehydrogenases (CAD). These | 81.51 | |
| PLN02989 | 325 | cinnamyl-alcohol dehydrogenase family protein | 81.44 | |
| cd05288 | 329 | PGDH Prostaglandin dehydrogenases. Prostaglandins | 81.34 | |
| PRK09291 | 257 | short chain dehydrogenase; Provisional | 81.12 | |
| PF02558 | 151 | ApbA: Ketopantoate reductase PanE/ApbA; InterPro: | 80.9 | |
| TIGR00497 | 501 | hsdM type I restriction system adenine methylase ( | 80.68 | |
| KOG2360 | 413 | consensus Proliferation-associated nucleolar prote | 80.6 | |
| cd08289 | 326 | MDR_yhfp_like Yhfp putative quinone oxidoreductase | 80.54 | |
| cd08262 | 341 | Zn_ADH8 Alcohol dehydrogenases of the MDR family. | 80.07 |
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=278.38 Aligned_cols=230 Identities=37% Similarity=0.678 Sum_probs=207.5
Q ss_pred hhhhcCChHHHHHhhhhhcCCC---------------------CCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccH
Q 048309 24 HISRKNSLAQAHRNISYHYDLD---------------------EDEDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGT 82 (288)
Q Consensus 24 ~~~~~~~~~~~~~~~a~~Yd~~---------------------~~~~l~~a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~ 82 (288)
+..+.++......++..|||.+ .+.++++||..+++.+++++.+++|.+|||||||+|.
T Consensus 6 ~~~~~~~~~~~~~~i~~HYDl~n~fy~l~Ld~~~~Yscayf~~~~~tL~eAQ~~k~~~~~~kl~L~~G~~lLDiGCGWG~ 85 (283)
T COG2230 6 RLLNRHSKRRAAENIQAHYDLSNDFYRLFLDPSMTYSCAYFEDPDMTLEEAQRAKLDLILEKLGLKPGMTLLDIGCGWGG 85 (283)
T ss_pred cccccccccchhhhhhhHhhcchHHHHHhcCCCCceeeEEeCCCCCChHHHHHHHHHHHHHhcCCCCCCEEEEeCCChhH
Confidence 3445566778899999999999 3448999999999999999999999999999999999
Q ss_pred HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCEEEEccchhhhCHhhHHHHHHHHh
Q 048309 83 FAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMMEAVGHEYMEEYFGCCE 162 (288)
Q Consensus 83 ~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~ 162 (288)
+++++|++.+.+|+|+++|+++.+.+++++...|++.+++++..|..++. +.||.|+|.++++|++.++...+++++.
T Consensus 86 l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~--e~fDrIvSvgmfEhvg~~~~~~ff~~~~ 163 (283)
T COG2230 86 LAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE--EPFDRIVSVGMFEHVGKENYDDFFKKVY 163 (283)
T ss_pred HHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc--cccceeeehhhHHHhCcccHHHHHHHHH
Confidence 99999999889999999999999999999999999889999999999987 4499999999999999899999999999
Q ss_pred cccccCcEEEEEeecCCCcccccccCchhhHhhhccCCCCCCCHHHHHHHHHHcCCh-----------------------
Q 048309 163 SLLAKDGLLVLQFSSTPDARYNEYRLSSDFIKEYIFPGGCLPSLSRITSAMAAASSL----------------------- 219 (288)
Q Consensus 163 ~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~----------------------- 219 (288)
++|+|||++++.+++.+..... ....|+.+|+||++.+|+...+.+...+. ++
T Consensus 164 ~~L~~~G~~llh~I~~~~~~~~---~~~~~i~~yiFPgG~lPs~~~i~~~~~~~-~~~v~~~~~~~~hYa~Tl~~W~~~f 239 (283)
T COG2230 164 ALLKPGGRMLLHSITGPDQEFR---RFPDFIDKYIFPGGELPSISEILELASEA-GFVVLDVESLRPHYARTLRLWRERF 239 (283)
T ss_pred hhcCCCceEEEEEecCCCcccc---cchHHHHHhCCCCCcCCCHHHHHHHHHhc-CcEEehHhhhcHHHHHHHHHHHHHH
Confidence 9999999999999998876543 46789999999999999999998876665 33
Q ss_pred ----HHHHhhcCChHHHHHHHHHHHHHHhhcccCCccEEEEEEEc
Q 048309 220 ----SKILALGFNEKFIWTWEYYFDYSAAGFKPRTLGNYQIVLSR 260 (288)
Q Consensus 220 ----~~~~~~gf~~~~~~~w~~~~~~~~~~f~~g~~~~~~~~~~k 260 (288)
+++.+. +++.+.++|++|+..|+.+|+.|.++.+|+++.|
T Consensus 240 ~~~~~~a~~~-~~e~~~r~w~~yl~~~~~~Fr~~~~~~~q~~~~k 283 (283)
T COG2230 240 EANRDEAIAL-YDERFYRMWELYLAACAAAFRAGYIDVFQFTLTK 283 (283)
T ss_pred HHHHHHHHHH-hhHHHHHHHHHHHHHHHHHhccCCceEEEEEeeC
Confidence 444444 8899999999999999999999999999999875
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-39 Score=280.59 Aligned_cols=223 Identities=49% Similarity=0.809 Sum_probs=181.0
Q ss_pred ChHHHHHhhhhhcCCC---------------------CCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHH
Q 048309 30 SLAQAHRNISYHYDLD---------------------EDEDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVV 88 (288)
Q Consensus 30 ~~~~~~~~~a~~Yd~~---------------------~~~~l~~a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la 88 (288)
+..++..+++.|||.+ .+.++++||.++++.+++++++++|.+|||||||+|.++..++
T Consensus 2 ~~~~~~~~i~~hYDl~ndfy~l~Ld~~m~YS~~~~~~~~~~Le~AQ~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a 81 (273)
T PF02353_consen 2 SKKQSRENISAHYDLGNDFYRLFLDPTMKYSCAYFDEGDDTLEEAQERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAA 81 (273)
T ss_dssp -S---HHHHHHHHTS-HHHHTTTS-TT---S----SSTT--HHHHHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHH
T ss_pred ccchHHHHHHHHcCCcHHHHHHhcCCCCCCCCeecCCchhhHHHHHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHH
Confidence 3456778888888887 5678999999999999999999999999999999999999999
Q ss_pred HccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccC
Q 048309 89 RQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKD 168 (288)
Q Consensus 89 ~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~Lkpg 168 (288)
++.+++|+||++|+++.+.+++++++.|+++++++..+|..+++ .+||.|++.++++|+++++...+++++.++|+||
T Consensus 82 ~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~--~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~Lkpg 159 (273)
T PF02353_consen 82 ERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLP--GKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPG 159 (273)
T ss_dssp HHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG-----S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETT
T ss_pred HHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccC--CCCCEEEEEechhhcChhHHHHHHHHHHHhcCCC
Confidence 98889999999999999999999999999989999999999876 4999999999999999889999999999999999
Q ss_pred cEEEEEeecCCCcccccccCc-hhhHhhhccCCCCCCCHHHHHHHHHHcCCh---------------------------H
Q 048309 169 GLLVLQFSSTPDARYNEYRLS-SDFIKEYIFPGGCLPSLSRITSAMAAASSL---------------------------S 220 (288)
Q Consensus 169 G~l~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~---------------------------~ 220 (288)
|++++..++.+...+...... ..|+.+|+||++.+|+..++...++.. +| +
T Consensus 160 G~~~lq~i~~~~~~~~~~~~~~~~~i~kyiFPgg~lps~~~~~~~~~~~-~l~v~~~~~~~~hY~~Tl~~W~~~f~~~~~ 238 (273)
T PF02353_consen 160 GRLVLQTITHRDPPYHAERRSSSDFIRKYIFPGGYLPSLSEILRAAEDA-GLEVEDVENLGRHYARTLRAWRENFDANRE 238 (273)
T ss_dssp EEEEEEEEEE--HHHHHCTTCCCHHHHHHTSTTS---BHHHHHHHHHHT-T-EEEEEEE-HHHHHHHHHHHHHHHHHTHH
T ss_pred cEEEEEecccccccchhhcCCCceEEEEeeCCCCCCCCHHHHHHHHhcC-CEEEEEEEEcCcCHHHHHHHHHHHHHHHHH
Confidence 999999998877665544333 389999999999999999999855554 44 6
Q ss_pred HHHhhcCChHHHHHHHHHHHHHHhhcccCCccEEEE
Q 048309 221 KILALGFNEKFIWTWEYYFDYSAAGFKPRTLGNYQI 256 (288)
Q Consensus 221 ~~~~~gf~~~~~~~w~~~~~~~~~~f~~g~~~~~~~ 256 (288)
++.+. |++.+.|+|++|+..|+++|..|.++.+|+
T Consensus 239 ~i~~~-~~~~f~r~w~~yl~~~~~~F~~g~~~~~Q~ 273 (273)
T PF02353_consen 239 EIIAL-FDEEFYRMWRYYLAYCAAGFRAGSIDVFQI 273 (273)
T ss_dssp HHHHH-SHHHHHHHHHHHHHHHHHHHHTTSCEEEEE
T ss_pred HHHHh-cCHHHHHHHHHHHHHHHHHHHCCCCeEEeC
Confidence 67776 999999999999999999999999999996
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=255.72 Aligned_cols=226 Identities=34% Similarity=0.596 Sum_probs=195.8
Q ss_pred hhhcCChHHHHHhhhhhcCCC--------------------CCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHH
Q 048309 25 ISRKNSLAQAHRNISYHYDLD--------------------EDEDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFA 84 (288)
Q Consensus 25 ~~~~~~~~~~~~~~a~~Yd~~--------------------~~~~l~~a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~ 84 (288)
..+.++..++..+++.|||.+ ...++.++|.+++..+++.+.++++.+|||||||+|.++
T Consensus 103 ~~~~n~~~~~~~~i~~hYd~~n~~y~l~ld~~m~ys~g~~~~~~~L~~Aq~~k~~~l~~~l~l~~g~rVLDIGcG~G~~a 182 (383)
T PRK11705 103 LFNLQSKKRAWIVGKEHYDLGNDLFEAMLDPRMQYSCGYWKDADTLEEAQEAKLDLICRKLQLKPGMRVLDIGCGWGGLA 182 (383)
T ss_pred HhccCChhhHHHhhhhhcCCcHHHHHHhcCCCCcccccccCCCCCHHHHHHHHHHHHHHHhCCCCCCEEEEeCCCccHHH
Confidence 466789999999999999998 346889999999999999999999999999999999999
Q ss_pred HHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCEEEEccchhhhCHhhHHHHHHHHhcc
Q 048309 85 IEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMMEAVGHEYMEEYFGCCESL 164 (288)
Q Consensus 85 ~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~ 164 (288)
..+++..+++|+|+|+|+++++.|+++++ ++ ++++..+|+.++ +++||.|++..+++|++..++..+++++.++
T Consensus 183 ~~la~~~g~~V~giDlS~~~l~~A~~~~~--~l--~v~~~~~D~~~l--~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~ 256 (383)
T PRK11705 183 RYAAEHYGVSVVGVTISAEQQKLAQERCA--GL--PVEIRLQDYRDL--NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRC 256 (383)
T ss_pred HHHHHHCCCEEEEEeCCHHHHHHHHHHhc--cC--eEEEEECchhhc--CCCCCEEEEeCchhhCChHHHHHHHHHHHHH
Confidence 99998777899999999999999999874 33 488888998776 3789999999999999877889999999999
Q ss_pred cccCcEEEEEeecCCCcccccccCchhhHhhhccCCCCCCCHHHHHHHHHHcCCh-------------------------
Q 048309 165 LAKDGLLVLQFSSTPDARYNEYRLSSDFIKEYIFPGGCLPSLSRITSAMAAASSL------------------------- 219 (288)
Q Consensus 165 LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~------------------------- 219 (288)
|||||.+++.+++.+... .....|+.+|++|++.+|+..++....+. ++
T Consensus 257 LkpGG~lvl~~i~~~~~~----~~~~~~i~~yifp~g~lps~~~i~~~~~~--~~~v~d~~~~~~hy~~TL~~W~~~f~~ 330 (383)
T PRK11705 257 LKPDGLFLLHTIGSNKTD----TNVDPWINKYIFPNGCLPSVRQIAQASEG--LFVMEDWHNFGADYDRTLMAWHENFEA 330 (383)
T ss_pred cCCCcEEEEEEccCCCCC----CCCCCCceeeecCCCcCCCHHHHHHHHHC--CcEEEEEecChhhHHHHHHHHHHHHHH
Confidence 999999999887655421 12356889999999999999988876543 33
Q ss_pred --HHHHhhcCChHHHHHHHHHHHHHHhhcccCCccEEEEEEEcCCC
Q 048309 220 --SKILALGFNEKFIWTWEYYFDYSAAGFKPRTLGNYQIVLSRPGN 263 (288)
Q Consensus 220 --~~~~~~gf~~~~~~~w~~~~~~~~~~f~~g~~~~~~~~~~k~~~ 263 (288)
+++.+ +|++.+.|+|++|+..|+++|+.|.++.+|+++.|++.
T Consensus 331 ~~~~~~~-~~~~~~~r~w~~yl~~~~~~F~~~~~~~~q~~~~~~~~ 375 (383)
T PRK11705 331 AWPELAD-NYSERFYRMWRYYLLSCAGAFRARDIQLWQVVFSPRGV 375 (383)
T ss_pred HHHHHHH-hCCHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeCCC
Confidence 44544 89999999999999999999999999999999999763
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.9e-23 Score=188.34 Aligned_cols=210 Identities=22% Similarity=0.285 Sum_probs=157.1
Q ss_pred CCHHHHHHHHHHHHHHHcCC-----CCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceE
Q 048309 48 EDLKVAQMRKHSLLIEKARV-----SKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIR 122 (288)
Q Consensus 48 ~~l~~a~~~~~~~l~~~~~~-----~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~ 122 (288)
.++.+++.+.+..+++.+.+ .++.+|||||||+|.++..+++..+++|+|+|+|+.+++.++++.+..++..+++
T Consensus 92 ~~~~~aq~~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~ 171 (340)
T PLN02244 92 GDHRQAQIRMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVS 171 (340)
T ss_pred ccHHHHHHHHHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceE
Confidence 46778889999999999887 6788999999999999999998767899999999999999999999888877899
Q ss_pred EEEcccCCCC-CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCCCccccc--ccCch-----hhHh
Q 048309 123 LYLCDYRQLP-KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPDARYNE--YRLSS-----DFIK 194 (288)
Q Consensus 123 ~~~~d~~~~~-~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~--~~~~~-----~~~~ 194 (288)
++++|+.+++ ++++||+|++..+++|+ .+...+++++.++|||||.+++.++......... ..... ....
T Consensus 172 ~~~~D~~~~~~~~~~FD~V~s~~~~~h~--~d~~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~ 249 (340)
T PLN02244 172 FQVADALNQPFEDGQFDLVWSMESGEHM--PDKRKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICA 249 (340)
T ss_pred EEEcCcccCCCCCCCccEEEECCchhcc--CCHHHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHh
Confidence 9999999988 67899999999999999 6788999999999999999999876543221110 10001 1111
Q ss_pred hhccCCCCCCCHHHHHHHHHHcCChHHHHhhcCChHHHHHHHHH--------------------------HHHHHhhccc
Q 048309 195 EYIFPGGCLPSLSRITSAMAAASSLSKILALGFNEKFIWTWEYY--------------------------FDYSAAGFKP 248 (288)
Q Consensus 195 ~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~gf~~~~~~~w~~~--------------------------~~~~~~~f~~ 248 (288)
.+..|. ..+..++.+.+.++ ||+.++...+.+.....|... +..+..+|..
T Consensus 250 ~~~~p~--~~s~~~~~~~l~~a-Gf~~v~~~d~s~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 326 (340)
T PLN02244 250 AYYLPA--WCSTSDYVKLAESL-GLQDIKTEDWSEHVAPFWPAVIKSALTLKGLFGLLTSGWATIRGALVMPLMIKGFKK 326 (340)
T ss_pred hccCCC--CCCHHHHHHHHHHC-CCCeeEeeeCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhhHHHHHHHHHhc
Confidence 222221 23677777777665 664444444443333333221 1235677899
Q ss_pred CCccEEEEEEEcCC
Q 048309 249 RTLGNYQIVLSRPG 262 (288)
Q Consensus 249 g~~~~~~~~~~k~~ 262 (288)
|.+..--++++||.
T Consensus 327 g~~~~~~~~~~kp~ 340 (340)
T PLN02244 327 GLIKFAVITCRKPL 340 (340)
T ss_pred CCceeeEEEEeCCC
Confidence 98888889999873
|
|
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.5e-24 Score=182.06 Aligned_cols=152 Identities=19% Similarity=0.330 Sum_probs=131.4
Q ss_pred hhcCChHHHHHhhhhhcCCCCCCCHHHHH-HHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHH
Q 048309 26 SRKNSLAQAHRNISYHYDLDEDEDLKVAQ-MRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAE 103 (288)
Q Consensus 26 ~~~~~~~~~~~~~a~~Yd~~~~~~l~~a~-~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~ 103 (288)
.++..+...|++++..||..++ -+.-.+ ..+-+.+++.+...+|.+|||+|||||.++..+++. +.++|+|+|+|+.
T Consensus 8 ~k~~~v~~vF~~ia~~YD~~n~-~~S~g~~~~Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ 86 (238)
T COG2226 8 EKQEKVQKVFDKVAKKYDLMND-LMSFGLHRLWRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISES 86 (238)
T ss_pred ccHHHHHHHHHhhHHHHHhhcc-cccCcchHHHHHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHH
Confidence 3446778999999999999853 222233 333455667777778999999999999999999998 5579999999999
Q ss_pred HHHHHHHHHHHcCCCCceEEEEcccCCCC-CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCCCc
Q 048309 104 QMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPDA 181 (288)
Q Consensus 104 ~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 181 (288)
|++.++++....+.. +++++++|++++| ++++||+|.+.+.++++ .+++.++++++|+|||||++++.++..|..
T Consensus 87 ML~~a~~k~~~~~~~-~i~fv~~dAe~LPf~D~sFD~vt~~fglrnv--~d~~~aL~E~~RVlKpgG~~~vle~~~p~~ 162 (238)
T COG2226 87 MLEVAREKLKKKGVQ-NVEFVVGDAENLPFPDNSFDAVTISFGLRNV--TDIDKALKEMYRVLKPGGRLLVLEFSKPDN 162 (238)
T ss_pred HHHHHHHHhhccCcc-ceEEEEechhhCCCCCCccCEEEeeehhhcC--CCHHHHHHHHHHhhcCCeEEEEEEcCCCCc
Confidence 999999999988874 4999999999999 99999999999999999 799999999999999999999999887764
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-24 Score=185.52 Aligned_cols=151 Identities=23% Similarity=0.328 Sum_probs=93.3
Q ss_pred hcCChHHHHHhhhhhcCCCCCCCHHHHHHHHH-HHHHHHcCCCCCCEEEEECCcccHHHHHHHHc--cCCEEEEEcCCHH
Q 048309 27 RKNSLAQAHRNISYHYDLDEDEDLKVAQMRKH-SLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAE 103 (288)
Q Consensus 27 ~~~~~~~~~~~~a~~Yd~~~~~~l~~a~~~~~-~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~giD~s~~ 103 (288)
++..+...|+.++..||..+. -+.-.+.+.+ ..+++.+...+|.+|||+|||||.++..++++ +..+|+|+|+|+.
T Consensus 5 k~~~v~~~Fd~ia~~YD~~n~-~ls~g~~~~wr~~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ 83 (233)
T PF01209_consen 5 KEQYVRKMFDRIAPRYDRMND-LLSFGQDRRWRRKLIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPG 83 (233)
T ss_dssp ---------------------------------SHHHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HH
T ss_pred HHHHHHHHHHHHHHHhCCCcc-ccCCcHHHHHHHHHHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHH
Confidence 445678899999999998743 2333333444 34666667788999999999999999999886 4579999999999
Q ss_pred HHHHHHHHHHHcCCCCceEEEEcccCCCC-CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCCCc
Q 048309 104 QMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPDA 181 (288)
Q Consensus 104 ~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 181 (288)
|++.|+++....+.. +++++++|++++| ++++||+|++.+.++.+ +++...+++++|+|||||++++.+++.|..
T Consensus 84 ML~~a~~k~~~~~~~-~i~~v~~da~~lp~~d~sfD~v~~~fglrn~--~d~~~~l~E~~RVLkPGG~l~ile~~~p~~ 159 (233)
T PF01209_consen 84 MLEVARKKLKREGLQ-NIEFVQGDAEDLPFPDNSFDAVTCSFGLRNF--PDRERALREMYRVLKPGGRLVILEFSKPRN 159 (233)
T ss_dssp HHHHHHHHHHHTT---SEEEEE-BTTB--S-TT-EEEEEEES-GGG---SSHHHHHHHHHHHEEEEEEEEEEEEEB-SS
T ss_pred HHHHHHHHHHhhCCC-CeeEEEcCHHHhcCCCCceeEEEHHhhHHhh--CCHHHHHHHHHHHcCCCeEEEEeeccCCCC
Confidence 999999999988874 8999999999999 78999999999999999 788999999999999999999999988865
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.7e-22 Score=170.99 Aligned_cols=179 Identities=18% Similarity=0.266 Sum_probs=140.1
Q ss_pred CEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCEEEEccchhhh
Q 048309 71 HEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMMEAV 149 (288)
Q Consensus 71 ~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~~~~~l~~~ 149 (288)
++|||||||+|..+..+++. ++++++|+|+|+++++.++++++..|+.++++++..|+...+.+++||+|++..+++|+
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~~~ 80 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVIHHI 80 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHHHhC
Confidence 37999999999999999887 56899999999999999999999988888899999999766644689999999999999
Q ss_pred CHhhHHHHHHHHhcccccCcEEEEEeecCCCcccccccCchhhHhhhccCCCCCCCHHHHHHHHHHcCCh----------
Q 048309 150 GHEYMEEYFGCCESLLAKDGLLVLQFSSTPDARYNEYRLSSDFIKEYIFPGGCLPSLSRITSAMAAASSL---------- 219 (288)
Q Consensus 150 ~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~---------- 219 (288)
.+...+++++.++|+|||.+++.++....... . ...... ...++..++.+.+.+. +|
T Consensus 81 --~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~--~--~~~~~~------~~~~s~~~~~~~l~~~-Gf~~~~~~~~~~ 147 (224)
T smart00828 81 --KDKMDLFSNISRHLKDGGHLVLADFIANLLSA--I--EHEETT------SYLVTREEWAELLARN-NLRVVEGVDASL 147 (224)
T ss_pred --CCHHHHHHHHHHHcCCCCEEEEEEcccccCcc--c--cccccc------cccCCHHHHHHHHHHC-CCeEEEeEECcH
Confidence 67899999999999999999998764321100 0 000010 1234455555444443 22
Q ss_pred ---------------HHHHhhcCChHHHHHHHHHHHHHHhhcccCCccEEEEEEEcCCC
Q 048309 220 ---------------SKILALGFNEKFIWTWEYYFDYSAAGFKPRTLGNYQIVLSRPGN 263 (288)
Q Consensus 220 ---------------~~~~~~gf~~~~~~~w~~~~~~~~~~f~~g~~~~~~~~~~k~~~ 263 (288)
+.+...++++.+.++|.+|...|++ |+.|.++..|++++|+..
T Consensus 148 ~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~k~~~ 205 (224)
T smart00828 148 EIANFLYDPGFEDNLERLYQDDLDEVTKRHFRGIANLGKL-LEKGLASYALLIVQKDEF 205 (224)
T ss_pred hHhhhccChhHHHHHHHhccccchHHHHHHHhhHHHHHHH-HHhchHhhEEEEEecccc
Confidence 3334436788899999999998887 999999999999999854
|
|
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.8e-21 Score=166.19 Aligned_cols=149 Identities=17% Similarity=0.162 Sum_probs=117.6
Q ss_pred ChHHHHHhhhhhcCCCCCCCHHHHHHHHHH-HHHHHcCCCCCCEEEEECCcccHHHHHHHHc--cCCEEEEEcCCHHHHH
Q 048309 30 SLAQAHRNISYHYDLDEDEDLKVAQMRKHS-LLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQMK 106 (288)
Q Consensus 30 ~~~~~~~~~a~~Yd~~~~~~l~~a~~~~~~-~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~giD~s~~~~~ 106 (288)
.+...|+.++..||...+ .+.....+.+. .+++.+.+.++.+|||+|||+|.++..+++. +..+|+|+|+|++|++
T Consensus 34 ~v~~~f~~~A~~YD~~~~-~~s~g~~~~~r~~~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~ 112 (261)
T PLN02233 34 ERQALFNRIAPVYDNLND-LLSLGQHRIWKRMAVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLA 112 (261)
T ss_pred HHHHHHHHhhhHHHHhhh-hhcCChhHHHHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHH
Confidence 456789999999996422 11111112232 3445567778899999999999999998876 3469999999999999
Q ss_pred HHHHHHHH--cCCCCceEEEEcccCCCC-CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCCCc
Q 048309 107 YAEMKVNE--AGLQDHIRLYLCDYRQLP-KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPDA 181 (288)
Q Consensus 107 ~a~~~~~~--~g~~~~v~~~~~d~~~~~-~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 181 (288)
.|+++... .+...+++++++|+.+++ ++++||+|++..+++|+ .++..+++++.++|||||.+++.++..+..
T Consensus 113 ~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~~l~~~--~d~~~~l~ei~rvLkpGG~l~i~d~~~~~~ 188 (261)
T PLN02233 113 VAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMGYGLRNV--VDRLKAMQEMYRVLKPGSRVSILDFNKSTQ 188 (261)
T ss_pred HHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEecccccC--CCHHHHHHHHHHHcCcCcEEEEEECCCCCc
Confidence 99887542 122247999999999998 77899999999999999 688999999999999999999998886653
|
|
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.8e-20 Score=155.06 Aligned_cols=182 Identities=15% Similarity=0.208 Sum_probs=143.5
Q ss_pred hhhcCChHHHHHhhhhhcCCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc-cC------CEEEE
Q 048309 25 ISRKNSLAQAHRNISYHYDLDEDEDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-TG------CNYTG 97 (288)
Q Consensus 25 ~~~~~~~~~~~~~~a~~Yd~~~~~~l~~a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~------~~v~g 97 (288)
..++..+..-+.+++..||..++.-.-.-.+-+-+..+.++.+.++.++||++||||..+..+.++ .. .+|++
T Consensus 56 ~eke~~V~~vF~~vA~~YD~mND~mSlGiHRlWKd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v 135 (296)
T KOG1540|consen 56 SEKERLVHHVFESVAKKYDIMNDAMSLGIHRLWKDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTV 135 (296)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEE
Confidence 444555677899999999998553222223333455778889889999999999999999999887 33 68999
Q ss_pred EcCCHHHHHHHHHHHHHcCCCCc--eEEEEcccCCCC-CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 98 ITLSAEQMKYAEMKVNEAGLQDH--IRLYLCDYRQLP-KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 98 iD~s~~~~~~a~~~~~~~g~~~~--v~~~~~d~~~~~-~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
+|++|+|++.++++..+.++... +.++++|++++| ++.+||..++.+.+..+ .++++.+++++|+|||||+|.+.
T Consensus 136 ~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~--th~~k~l~EAYRVLKpGGrf~cL 213 (296)
T KOG1540|consen 136 LDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFDAYTIAFGIRNV--THIQKALREAYRVLKPGGRFSCL 213 (296)
T ss_pred EeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcceeEEEecceecC--CCHHHHHHHHHHhcCCCcEEEEE
Confidence 99999999999999988887555 899999999999 88999999999999998 78899999999999999999998
Q ss_pred eecCCCcccccccCchhhHhhhccCCCCCCCHHHHHHHHHH
Q 048309 175 FSSTPDARYNEYRLSSDFIKEYIFPGGCLPSLSRITSAMAA 215 (288)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~ 215 (288)
++..-++.+ ...+...|.+.. +|-+.+++....+
T Consensus 214 eFskv~~~~-----l~~fy~~ysf~V--lpvlG~~iagd~~ 247 (296)
T KOG1540|consen 214 EFSKVENEP-----LKWFYDQYSFDV--LPVLGEIIAGDRK 247 (296)
T ss_pred EccccccHH-----HHHHHHhhhhhh--hchhhHhhhhhHh
Confidence 887655321 234455566543 6666666654433
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.85 E-value=7e-21 Score=169.30 Aligned_cols=146 Identities=19% Similarity=0.350 Sum_probs=111.1
Q ss_pred CCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CCCCCCEEEEccch
Q 048309 68 SKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAKKYDRIISCEMM 146 (288)
Q Consensus 68 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~~fD~I~~~~~l 146 (288)
.++.+|||||||+|.++..+++. +++|+|||+++++++.|+++....+...+++++++|+++++ .+++||+|++..++
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~-g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vL 208 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARM-GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVI 208 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence 46779999999999999999874 78999999999999999988776555457999999999887 66799999999999
Q ss_pred hhhCHhhHHHHHHHHhcccccCcEEEEEeecCCCcccccccCchhhHhhhccCCC----CCCCHHHHHHHHHHc
Q 048309 147 EAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPDARYNEYRLSSDFIKEYIFPGG----CLPSLSRITSAMAAA 216 (288)
Q Consensus 147 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~----~~p~~~~~~~~~~~~ 216 (288)
+|+ .++..+++++.++|||||.+++.++......+........++.+++.++. ...+..++...++++
T Consensus 209 eHv--~d~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~a 280 (322)
T PLN02396 209 EHV--ANPAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRA 280 (322)
T ss_pred Hhc--CCHHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHc
Confidence 999 77899999999999999999998876432211110111122333333322 245667777666554
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.1e-19 Score=154.80 Aligned_cols=155 Identities=15% Similarity=0.262 Sum_probs=120.9
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CC
Q 048309 56 RKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KA 134 (288)
Q Consensus 56 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~ 134 (288)
.....+++.+.+.++.+|||||||+|..+..+++..+++|+|+|+|+.+++.|+++... ..++.+.++|+.+.+ ++
T Consensus 39 ~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~---~~~i~~~~~D~~~~~~~~ 115 (263)
T PTZ00098 39 EATTKILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD---KNKIEFEANDILKKDFPE 115 (263)
T ss_pred HHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc---CCceEEEECCcccCCCCC
Confidence 34577888888899999999999999999999876677999999999999999988654 247999999998877 67
Q ss_pred CCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCCCcccccccCchhhHhhhcc-CCCCCCCHHHHHHHH
Q 048309 135 KKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPDARYNEYRLSSDFIKEYIF-PGGCLPSLSRITSAM 213 (288)
Q Consensus 135 ~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~p~~~~~~~~~ 213 (288)
++||+|++..++.|++.+++..+++++.++|||||.+++.++....... .......++. ....+++..++.+.+
T Consensus 116 ~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l 190 (263)
T PTZ00098 116 NTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIEN-----WDEEFKAYIKKRKYTLIPIQEYGDLI 190 (263)
T ss_pred CCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccC-----cHHHHHHHHHhcCCCCCCHHHHHHHH
Confidence 8999999999999997668999999999999999999998876543210 1111122221 123456777777777
Q ss_pred HHcCCh
Q 048309 214 AAASSL 219 (288)
Q Consensus 214 ~~~~~~ 219 (288)
.++ ||
T Consensus 191 ~~a-GF 195 (263)
T PTZ00098 191 KSC-NF 195 (263)
T ss_pred HHC-CC
Confidence 665 44
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.7e-20 Score=159.37 Aligned_cols=150 Identities=16% Similarity=0.228 Sum_probs=121.9
Q ss_pred cCChHHHHHhhhhhcCCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc--cCCEEEEEcCCHHHH
Q 048309 28 KNSLAQAHRNISYHYDLDEDEDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQM 105 (288)
Q Consensus 28 ~~~~~~~~~~~a~~Yd~~~~~~l~~a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~giD~s~~~~ 105 (288)
+..+...|++++.+||..+...-..........+++.+.+.++.+|||+|||+|.++..+++. ++.+|+|+|+++.++
T Consensus 4 ~~~~~~~f~~~a~~yd~~~~~~~~~~~~~~~~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~ 83 (231)
T TIGR02752 4 EERVHKVFEKIYKKYDRMNSVISFQRHKKWRKDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENML 83 (231)
T ss_pred HHHHHHHHHHhhhHHhHHHHHhcCCchHHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHH
Confidence 445678889999999975221000112222356778888888999999999999999999876 456999999999999
Q ss_pred HHHHHHHHHcCCCCceEEEEcccCCCC-CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCCC
Q 048309 106 KYAEMKVNEAGLQDHIRLYLCDYRQLP-KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPD 180 (288)
Q Consensus 106 ~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 180 (288)
+.++++.+..++ ++++++.+|+.+++ ++++||+|++..+++|+ ++..++++++.++|+|||.+++.+...+.
T Consensus 84 ~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~--~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~ 156 (231)
T TIGR02752 84 SVGRQKVKDAGL-HNVELVHGNAMELPFDDNSFDYVTIGFGLRNV--PDYMQVLREMYRVVKPGGKVVCLETSQPT 156 (231)
T ss_pred HHHHHHHHhcCC-CceEEEEechhcCCCCCCCccEEEEecccccC--CCHHHHHHHHHHHcCcCeEEEEEECCCCC
Confidence 999999988777 58999999999887 66899999999999998 67889999999999999999987765544
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.3e-20 Score=159.01 Aligned_cols=119 Identities=23% Similarity=0.298 Sum_probs=104.5
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC--C
Q 048309 56 RKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP--K 133 (288)
Q Consensus 56 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~--~ 133 (288)
+.+..+++.+. .++.+|||+|||+|..+..+++. +.+|+|+|+|++|++.|+++++..++..+++++++|+.+++ .
T Consensus 32 ~~~~~~l~~l~-~~~~~vLDiGcG~G~~a~~la~~-g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~ 109 (255)
T PRK11036 32 QDLDRLLAELP-PRPLRVLDAGGGEGQTAIKLAEL-GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHL 109 (255)
T ss_pred HHHHHHHHhcC-CCCCEEEEeCCCchHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhc
Confidence 34556777766 45679999999999999999986 78999999999999999999998888778999999998865 5
Q ss_pred CCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecC
Q 048309 134 AKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSST 178 (288)
Q Consensus 134 ~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 178 (288)
+++||+|++..+++|+ +++..+++++.++|||||.+++..+..
T Consensus 110 ~~~fD~V~~~~vl~~~--~~~~~~l~~~~~~LkpgG~l~i~~~n~ 152 (255)
T PRK11036 110 ETPVDLILFHAVLEWV--ADPKSVLQTLWSVLRPGGALSLMFYNA 152 (255)
T ss_pred CCCCCEEEehhHHHhh--CCHHHHHHHHHHHcCCCeEEEEEEECc
Confidence 6899999999999999 677899999999999999999876654
|
|
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.8e-19 Score=152.18 Aligned_cols=125 Identities=15% Similarity=0.207 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHH--c-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccC
Q 048309 53 AQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVR--Q-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYR 129 (288)
Q Consensus 53 a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~--~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~ 129 (288)
.....+..++... ..++.+|||+|||+|..+..+++ . ++++++|+|+|+.|++.|+++++..+...+++++++|+.
T Consensus 41 ~~~~~~~~~~~~~-~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~ 119 (247)
T PRK15451 41 NIISMIGMLAERF-VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIR 119 (247)
T ss_pred HHHHHHHHHHHHh-CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChh
Confidence 3333444444443 34678999999999999988887 2 678999999999999999999988877678999999999
Q ss_pred CCCCCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCC
Q 048309 130 QLPKAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTP 179 (288)
Q Consensus 130 ~~~~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 179 (288)
+++. ..+|+|++..+++|+++.+...+++++++.|||||.+++.+....
T Consensus 120 ~~~~-~~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~ 168 (247)
T PRK15451 120 DIAI-ENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSF 168 (247)
T ss_pred hCCC-CCCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCC
Confidence 8774 359999999999999877788999999999999999999875543
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.1e-19 Score=136.26 Aligned_cols=107 Identities=24% Similarity=0.378 Sum_probs=93.3
Q ss_pred CCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEccc-CCCCCCCCCCEEEEcc-c
Q 048309 69 KEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDY-RQLPKAKKYDRIISCE-M 145 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~-~~~~~~~~fD~I~~~~-~ 145 (288)
|+.+|||||||+|.++..+++. ++.+|+|+|+|+++++.+++++...+..++++++++|+ ......+.||+|++.. +
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~~ 80 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGFT 80 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSGS
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCCc
Confidence 5789999999999999999995 78999999999999999999997777778999999999 4444557899999999 5
Q ss_pred hhhhC-HhhHHHHHHHHhcccccCcEEEEEe
Q 048309 146 MEAVG-HEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 146 l~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
++++. .++..++++++.+.|+|||++++.+
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 81 LHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 55442 2578899999999999999999965
|
... |
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.9e-20 Score=156.09 Aligned_cols=109 Identities=25% Similarity=0.440 Sum_probs=99.9
Q ss_pred CCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CCCCCCEEEEccch
Q 048309 68 SKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAKKYDRIISCEMM 146 (288)
Q Consensus 68 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~~fD~I~~~~~l 146 (288)
-+|.+|||+|||.|.++..+|+. |.+|+|+|+++.+++.|+..+.+.|+ ++++.+..++++. ..++||+|+|..++
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~-Ga~VtgiD~se~~I~~Ak~ha~e~gv--~i~y~~~~~edl~~~~~~FDvV~cmEVl 134 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARL-GASVTGIDASEKPIEVAKLHALESGV--NIDYRQATVEDLASAGGQFDVVTCMEVL 134 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHC-CCeeEEecCChHHHHHHHHhhhhccc--cccchhhhHHHHHhcCCCccEEEEhhHH
Confidence 47899999999999999999996 89999999999999999999999987 4889999999887 55899999999999
Q ss_pred hhhCHhhHHHHHHHHhcccccCcEEEEEeecCCCc
Q 048309 147 EAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPDA 181 (288)
Q Consensus 147 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 181 (288)
+|+ +++..+++.|.+++||||.++++++.....
T Consensus 135 EHv--~dp~~~~~~c~~lvkP~G~lf~STinrt~k 167 (243)
T COG2227 135 EHV--PDPESFLRACAKLVKPGGILFLSTINRTLK 167 (243)
T ss_pred Hcc--CCHHHHHHHHHHHcCCCcEEEEeccccCHH
Confidence 999 888999999999999999999998875443
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.6e-19 Score=146.76 Aligned_cols=115 Identities=17% Similarity=0.261 Sum_probs=99.9
Q ss_pred HHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCE
Q 048309 60 LLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDR 139 (288)
Q Consensus 60 ~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~ 139 (288)
.+++.+...++.+|||+|||+|..+..++++ +.+|+|+|+|+.+++.++++.+..++ .++++.+.|+.+++.+++||+
T Consensus 21 ~l~~~l~~~~~~~vLDiGcG~G~~a~~La~~-g~~V~gvD~S~~~i~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~fD~ 98 (197)
T PRK11207 21 EVLEAVKVVKPGKTLDLGCGNGRNSLYLAAN-GFDVTAWDKNPMSIANLERIKAAENL-DNLHTAVVDLNNLTFDGEYDF 98 (197)
T ss_pred HHHHhcccCCCCcEEEECCCCCHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHHcCC-CcceEEecChhhCCcCCCcCE
Confidence 3445555567789999999999999999986 78999999999999999999988887 468999999988775578999
Q ss_pred EEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEee
Q 048309 140 IISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 140 I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
|++..+++|+++++...+++++.++|+|||.+++...
T Consensus 99 I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~ 135 (197)
T PRK11207 99 ILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAA 135 (197)
T ss_pred EEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEE
Confidence 9999999998877899999999999999999765443
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.5e-18 Score=158.96 Aligned_cols=152 Identities=16% Similarity=0.236 Sum_probs=119.0
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CCC
Q 048309 57 KHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAK 135 (288)
Q Consensus 57 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~ 135 (288)
....+++.+.+.++.+|||||||+|..+..+++..+++|+|+|+|+.+++.|+++... ...++++.++|+.+.+ +++
T Consensus 254 ~te~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~--~~~~v~~~~~d~~~~~~~~~ 331 (475)
T PLN02336 254 TTKEFVDKLDLKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIG--RKCSVEFEVADCTKKTYPDN 331 (475)
T ss_pred HHHHHHHhcCCCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhc--CCCceEEEEcCcccCCCCCC
Confidence 3456777777778889999999999999999887678999999999999999987653 3357999999999877 667
Q ss_pred CCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCCCcccccccCchhhHhhhc-cCCCCCCCHHHHHHHHH
Q 048309 136 KYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPDARYNEYRLSSDFIKEYI-FPGGCLPSLSRITSAMA 214 (288)
Q Consensus 136 ~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~p~~~~~~~~~~ 214 (288)
+||+|+|..+++|+ .++..++++++++|+|||.+++.++........ . ....++ ..+..+++..++.+.+.
T Consensus 332 ~fD~I~s~~~l~h~--~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~-----~-~~~~~~~~~g~~~~~~~~~~~~l~ 403 (475)
T PLN02336 332 SFDVIYSRDTILHI--QDKPALFRSFFKWLKPGGKVLISDYCRSPGTPS-----P-EFAEYIKQRGYDLHDVQAYGQMLK 403 (475)
T ss_pred CEEEEEECCccccc--CCHHHHHHHHHHHcCCCeEEEEEEeccCCCCCc-----H-HHHHHHHhcCCCCCCHHHHHHHHH
Confidence 89999999999999 778999999999999999999988764332111 1 111222 22345678888887776
Q ss_pred HcCCh
Q 048309 215 AASSL 219 (288)
Q Consensus 215 ~~~~~ 219 (288)
++ ||
T Consensus 404 ~a-GF 407 (475)
T PLN02336 404 DA-GF 407 (475)
T ss_pred HC-CC
Confidence 65 54
|
|
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.1e-18 Score=152.35 Aligned_cols=161 Identities=18% Similarity=0.173 Sum_probs=116.6
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCC
Q 048309 56 RKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAK 135 (288)
Q Consensus 56 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~ 135 (288)
.++..++..+...++.+|||||||+|.++..++......|+|+|+|+.++..++......+...+++++.+|+++++.++
T Consensus 109 ~k~~~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~ 188 (322)
T PRK15068 109 WKWDRVLPHLSPLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALK 188 (322)
T ss_pred hHHHHHHHhhCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCcC
Confidence 34566677777667899999999999999999987444799999999998766554333332357999999999988668
Q ss_pred CCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCCCcccccccCchhhHhhhccCCCCCCCHHHHHHHHHH
Q 048309 136 KYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPDARYNEYRLSSDFIKEYIFPGGCLPSLSRITSAMAA 215 (288)
Q Consensus 136 ~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~ 215 (288)
+||+|+|.++++|+ .++..+++++++.|+|||.+++.++..+............+.. +.....+|+..++.+.+.+
T Consensus 189 ~FD~V~s~~vl~H~--~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~--~~~~~~lps~~~l~~~L~~ 264 (322)
T PRK15068 189 AFDTVFSMGVLYHR--RSPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAK--MRNVYFIPSVPALKNWLER 264 (322)
T ss_pred CcCEEEECChhhcc--CCHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhc--CccceeCCCHHHHHHHHHH
Confidence 89999999999999 7889999999999999999999876543322111111111100 1111236788888888766
Q ss_pred cCChHH
Q 048309 216 ASSLSK 221 (288)
Q Consensus 216 ~~~~~~ 221 (288)
+ ||+.
T Consensus 265 a-GF~~ 269 (322)
T PRK15068 265 A-GFKD 269 (322)
T ss_pred c-CCce
Confidence 5 4533
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.8e-18 Score=149.97 Aligned_cols=137 Identities=18% Similarity=0.190 Sum_probs=115.2
Q ss_pred CChHHHHHhhhhhcCCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHH
Q 048309 29 NSLAQAHRNISYHYDLDEDEDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYA 108 (288)
Q Consensus 29 ~~~~~~~~~~a~~Yd~~~~~~l~~a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a 108 (288)
..+...|+..+..||.. ...|......+++.+...++.+|||+|||+|.++..+++. +.+++++|+|+.|++.+
T Consensus 7 ~~i~~~F~~aa~~Y~~~-----~~~q~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~~~D~s~~~l~~a 80 (251)
T PRK10258 7 QAIAAAFGRAAAHYEQH-----AELQRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRER-GSQVTALDLSPPMLAQA 80 (251)
T ss_pred HHHHHHHHHHHHhHhHH-----HHHHHHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHc-CCeEEEEECCHHHHHHH
Confidence 35677888888899853 3356666677888887667789999999999999999875 78999999999999999
Q ss_pred HHHHHHcCCCCceEEEEcccCCCC-CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCC
Q 048309 109 EMKVNEAGLQDHIRLYLCDYRQLP-KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTP 179 (288)
Q Consensus 109 ~~~~~~~g~~~~v~~~~~d~~~~~-~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 179 (288)
+++.. ...++++|+++++ ++++||+|++..+++++ .++..++.++.++|+|||.+++.++...
T Consensus 81 ~~~~~------~~~~~~~d~~~~~~~~~~fD~V~s~~~l~~~--~d~~~~l~~~~~~Lk~gG~l~~~~~~~~ 144 (251)
T PRK10258 81 RQKDA------ADHYLAGDIESLPLATATFDLAWSNLAVQWC--GNLSTALRELYRVVRPGGVVAFTTLVQG 144 (251)
T ss_pred HhhCC------CCCEEEcCcccCcCCCCcEEEEEECchhhhc--CCHHHHHHHHHHHcCCCeEEEEEeCCCC
Confidence 87642 3578999999988 66799999999999998 7889999999999999999999876643
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.79 E-value=1e-17 Score=148.55 Aligned_cols=161 Identities=15% Similarity=0.122 Sum_probs=115.7
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCC
Q 048309 56 RKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAK 135 (288)
Q Consensus 56 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~ 135 (288)
-++..++..+...++.+|||||||+|.++..++......|+|+|+|+.|+..++..-...+...++.+..+++.+++...
T Consensus 108 ~~~~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~ 187 (314)
T TIGR00452 108 IKWDRVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHELY 187 (314)
T ss_pred HHHHHHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCCC
Confidence 34567788887778899999999999999988876334799999999998775443222222247889999999888556
Q ss_pred CCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCCCcccccccCchhhHhhhccCCCCCCCHHHHHHHHHH
Q 048309 136 KYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPDARYNEYRLSSDFIKEYIFPGGCLPSLSRITSAMAA 215 (288)
Q Consensus 136 ~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~ 215 (288)
+||+|+|.++++|+ .++..++++++++|+|||.+++.+................+ .+ +.....+|+..++...+++
T Consensus 188 ~FD~V~s~gvL~H~--~dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry-~k-~~nv~flpS~~~L~~~L~~ 263 (314)
T TIGR00452 188 AFDTVFSMGVLYHR--KSPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRY-AK-MKNVYFIPSVSALKNWLEK 263 (314)
T ss_pred CcCEEEEcchhhcc--CCHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHH-Hh-ccccccCCCHHHHHHHHHH
Confidence 89999999999999 78899999999999999999998765433211111111111 10 1111246788888887766
Q ss_pred cCChHH
Q 048309 216 ASSLSK 221 (288)
Q Consensus 216 ~~~~~~ 221 (288)
+ ||..
T Consensus 264 a-GF~~ 268 (314)
T TIGR00452 264 V-GFEN 268 (314)
T ss_pred C-CCeE
Confidence 5 5533
|
Known examples to date are restricted to the proteobacteria. |
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.7e-18 Score=141.75 Aligned_cols=114 Identities=14% Similarity=0.172 Sum_probs=97.1
Q ss_pred HHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCE
Q 048309 60 LLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDR 139 (288)
Q Consensus 60 ~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~ 139 (288)
.+++.+...++.+|||+|||+|.++..++++ +.+|+|+|+|+.+++.++++++..++ ++++...|+...+.+++||+
T Consensus 21 ~l~~~~~~~~~~~vLDiGcG~G~~a~~la~~-g~~V~~iD~s~~~l~~a~~~~~~~~~--~v~~~~~d~~~~~~~~~fD~ 97 (195)
T TIGR00477 21 AVREAVKTVAPCKTLDLGCGQGRNSLYLSLA-GYDVRAWDHNPASIASVLDMKARENL--PLRTDAYDINAAALNEDYDF 97 (195)
T ss_pred HHHHHhccCCCCcEEEeCCCCCHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHHHhCC--CceeEeccchhccccCCCCE
Confidence 4445555556779999999999999999986 78999999999999999999888777 37888888876664468999
Q ss_pred EEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEee
Q 048309 140 IISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 140 I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
|++..+++|++.++...+++++.++|+|||++++...
T Consensus 98 I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~ 134 (195)
T TIGR00477 98 IFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAA 134 (195)
T ss_pred EEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEe
Confidence 9999999999777889999999999999999666544
|
Part of a tellurite-reducing operon tehA and tehB |
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.2e-18 Score=127.61 Aligned_cols=94 Identities=28% Similarity=0.478 Sum_probs=83.5
Q ss_pred EEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CCCCCCEEEEccchhhhCHh
Q 048309 74 LEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAKKYDRIISCEMMEAVGHE 152 (288)
Q Consensus 74 LDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~~fD~I~~~~~l~~~~~~ 152 (288)
||+|||+|..+..+++.++.+|+|+|+++++++.++++.... ++.++.+|+.+++ ++++||+|++..+++|+ +
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~----~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~--~ 74 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNE----GVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL--E 74 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTS----TEEEEESBTTSSSS-TT-EEEEEEESHGGGS--S
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhccccc----CchheeehHHhCccccccccccccccceeec--c
Confidence 799999999999999976789999999999999999987654 4669999999999 88999999999999999 8
Q ss_pred hHHHHHHHHhcccccCcEEEE
Q 048309 153 YMEEYFGCCESLLAKDGLLVL 173 (288)
Q Consensus 153 ~~~~~l~~~~~~LkpgG~l~~ 173 (288)
++..+++++.|+|||||++++
T Consensus 75 ~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 75 DPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHHHHEEEEEEEEE
T ss_pred CHHHHHHHHHHHcCcCeEEeC
Confidence 999999999999999999985
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.9e-17 Score=141.39 Aligned_cols=141 Identities=16% Similarity=0.143 Sum_probs=109.1
Q ss_pred hhhhhcCCCCC--CCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc---cCCEEEEEcCCHHHHHHHHHH
Q 048309 37 NISYHYDLDED--EDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ---TGCNYTGITLSAEQMKYAEMK 111 (288)
Q Consensus 37 ~~a~~Yd~~~~--~~l~~a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~---~~~~v~giD~s~~~~~~a~~~ 111 (288)
..+..||.... .+........+..+.+.. ..++.+|||+|||+|..+..+++. ++++++|+|+|+.|++.|+++
T Consensus 20 ~~a~~y~~~~~~~~p~y~~~~~~~~~l~~~~-~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~ 98 (239)
T TIGR00740 20 NVAEVFPDMIQRSVPGYSNIITAIGMLAERF-VTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQH 98 (239)
T ss_pred HHHHhCcchhhccCCCHHHHHHHHHHHHHHh-CCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHH
Confidence 34566765311 122223333333333332 346789999999999999999874 578999999999999999999
Q ss_pred HHHcCCCCceEEEEcccCCCCCCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCC
Q 048309 112 VNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTP 179 (288)
Q Consensus 112 ~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 179 (288)
++..+...+++++++|+.+++. ..+|+|++..+++|+++++...++++++++|+|||.+++.+...+
T Consensus 99 ~~~~~~~~~v~~~~~d~~~~~~-~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~ 165 (239)
T TIGR00740 99 IAAYHSEIPVEILCNDIRHVEI-KNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRF 165 (239)
T ss_pred HHhcCCCCCeEEEECChhhCCC-CCCCEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccC
Confidence 8876655679999999998874 359999999999999877889999999999999999999876543
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.4e-18 Score=145.89 Aligned_cols=142 Identities=20% Similarity=0.353 Sum_probs=107.8
Q ss_pred CCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCC-C----ceEEEEcccCCCCCCCCCCEEEEcc
Q 048309 70 EHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQ-D----HIRLYLCDYRQLPKAKKYDRIISCE 144 (288)
Q Consensus 70 ~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~-~----~v~~~~~d~~~~~~~~~fD~I~~~~ 144 (288)
|.+|||+|||+|.++..||+. +++|+|||+++.+++.|++........ . ++++...|++... +.||+|+|..
T Consensus 90 g~~ilDvGCGgGLLSepLArl-ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~--~~fDaVvcse 166 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARL-GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT--GKFDAVVCSE 166 (282)
T ss_pred CceEEEeccCccccchhhHhh-CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc--cccceeeeHH
Confidence 478999999999999999995 899999999999999999985444332 1 3667777777765 5699999999
Q ss_pred chhhhCHhhHHHHHHHHhcccccCcEEEEEeecCCCcccccccCchhhHhhhccCCCC----CCCHHHHHHHHHHc
Q 048309 145 MMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPDARYNEYRLSSDFIKEYIFPGGC----LPSLSRITSAMAAA 216 (288)
Q Consensus 145 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~----~p~~~~~~~~~~~~ 216 (288)
+++|+ .++..+++.+.+.|||||.+++++....-..+..-.-..+.+.+.+.+|.+ +++..++.+.+...
T Consensus 167 vleHV--~dp~~~l~~l~~~lkP~G~lfittinrt~lS~~~~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l~~~ 240 (282)
T KOG1270|consen 167 VLEHV--KDPQEFLNCLSALLKPNGRLFITTINRTILSFAGTIFLAEIVLRIVPKGTHTWEKFINPEELTSILNAN 240 (282)
T ss_pred HHHHH--hCHHHHHHHHHHHhCCCCceEeeehhhhHHHhhccccHHHHHHHhcCCCCcCHHHcCCHHHHHHHHHhc
Confidence 99999 999999999999999999999998875543332222223344444444433 45666777666554
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=8e-18 Score=146.45 Aligned_cols=116 Identities=22% Similarity=0.285 Sum_probs=101.5
Q ss_pred HHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCC
Q 048309 52 VAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQ 130 (288)
Q Consensus 52 ~a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~ 130 (288)
..+......++..+...++.+|||||||+|.++..+++. ++.+|+|+|+|+.+++.++++. .+++++.+|+.+
T Consensus 14 ~~~~~~~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~------~~~~~~~~d~~~ 87 (258)
T PRK01683 14 DERTRPARDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL------PDCQFVEADIAS 87 (258)
T ss_pred HHhhcHHHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC------CCCeEEECchhc
Confidence 345556678888888888999999999999999999987 5789999999999999998764 368999999988
Q ss_pred CCCCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 131 LPKAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 131 ~~~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
+.+.++||+|++..+++|+ .+...+++++.++|+|||.+++..
T Consensus 88 ~~~~~~fD~v~~~~~l~~~--~d~~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 88 WQPPQALDLIFANASLQWL--PDHLELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred cCCCCCccEEEEccChhhC--CCHHHHHHHHHHhcCCCcEEEEEC
Confidence 7656799999999999999 678899999999999999999864
|
|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.3e-18 Score=136.40 Aligned_cols=107 Identities=27% Similarity=0.539 Sum_probs=96.5
Q ss_pred CCCCEEEEECCcccHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCC--CCCCCEEEEc
Q 048309 68 SKEHEVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPK--AKKYDRIISC 143 (288)
Q Consensus 68 ~~~~~vLDiGcG~G~~~~~la~~--~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~--~~~fD~I~~~ 143 (288)
+.+.+|||+|||+|.++..+++. ++.+++|+|+|+++++.|+++++..+++ +++++++|+.+++. .++||+|++.
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~-ni~~~~~d~~~l~~~~~~~~D~I~~~ 80 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD-NIEFIQGDIEDLPQELEEKFDIIISN 80 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST-TEEEEESBTTCGCGCSSTTEEEEEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc-ccceEEeehhccccccCCCeeEEEEc
Confidence 46789999999999999999943 6789999999999999999999999996 89999999999763 3799999999
Q ss_pred cchhhhCHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 144 EMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 144 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
.+++|+ .+...+++++.+.|++||.+++.+..
T Consensus 81 ~~l~~~--~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 81 GVLHHF--PDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp STGGGT--SHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred Cchhhc--cCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 999999 78889999999999999999998776
|
... |
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.5e-18 Score=148.52 Aligned_cols=113 Identities=18% Similarity=0.240 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC
Q 048309 54 QMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP 132 (288)
Q Consensus 54 ~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~ 132 (288)
+.+....+++.+...++.+|||||||+|.++..+++. ++.+|+|+|+|+.|++.|++. +++++++|+.+++
T Consensus 14 ~~~~~~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~ 85 (255)
T PRK14103 14 RGRPFYDLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER--------GVDARTGDVRDWK 85 (255)
T ss_pred hhCHHHHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc--------CCcEEEcChhhCC
Confidence 3345567888888888899999999999999999887 578999999999999998653 4789999998876
Q ss_pred CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEee
Q 048309 133 KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 133 ~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
+.++||+|++..+++|+ .+...+++++.++|||||.+++...
T Consensus 86 ~~~~fD~v~~~~~l~~~--~d~~~~l~~~~~~LkpgG~l~~~~~ 127 (255)
T PRK14103 86 PKPDTDVVVSNAALQWV--PEHADLLVRWVDELAPGSWIAVQVP 127 (255)
T ss_pred CCCCceEEEEehhhhhC--CCHHHHHHHHHHhCCCCcEEEEEcC
Confidence 56799999999999999 6789999999999999999998754
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.4e-18 Score=150.93 Aligned_cols=211 Identities=16% Similarity=0.126 Sum_probs=139.3
Q ss_pred hhhhcCChHHHHHhhhhhcCCCCCCCHHHHHHHHHHHHHHHcCC-CCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCC
Q 048309 24 HISRKNSLAQAHRNISYHYDLDEDEDLKVAQMRKHSLLIEKARV-SKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLS 101 (288)
Q Consensus 24 ~~~~~~~~~~~~~~~a~~Yd~~~~~~l~~a~~~~~~~l~~~~~~-~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s 101 (288)
..+.+.+....|+.++..||........ .......+++.+.+ .++.+|||||||+|.++..+++. ++.+|+++|+|
T Consensus 69 ~~~h~~~~~~~y~~lA~~YD~~~~~~~~--~e~~r~~~l~~~~l~~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S 146 (340)
T PLN02490 69 FIQHKKEAFWFYRFLSIVYDHIINPGHW--TEDMRDDALEPADLSDRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQS 146 (340)
T ss_pred hhhhhhcceeEccceeeecCCCeecCcc--hHHHHHHHHhhcccCCCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECC
Confidence 3445555566788888899964211111 11222335555544 46789999999999999998876 56799999999
Q ss_pred HHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCCC
Q 048309 102 AEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPD 180 (288)
Q Consensus 102 ~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 180 (288)
++|++.++++... .+++++.+|+++++ ++++||+|++..+++|+ .+....++++.++|+|||.+++.....+.
T Consensus 147 ~~mL~~A~~k~~~----~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~--~d~~~~L~e~~rvLkPGG~LvIi~~~~p~ 220 (340)
T PLN02490 147 PHQLAKAKQKEPL----KECKIIEGDAEDLPFPTDYADRYVSAGSIEYW--PDPQRGIKEAYRVLKIGGKACLIGPVHPT 220 (340)
T ss_pred HHHHHHHHHhhhc----cCCeEEeccHHhCCCCCCceeEEEEcChhhhC--CCHHHHHHHHHHhcCCCcEEEEEEecCcc
Confidence 9999999987642 36889999999888 67899999999999999 66788999999999999999886544332
Q ss_pred cccccccCchhhHhhhccC-CCCCCCHHHHHHHHHHcCChHHHHhhcCChHHHHHHHHHHHHHHhhcccCCccEEEEEEE
Q 048309 181 ARYNEYRLSSDFIKEYIFP-GGCLPSLSRITSAMAAASSLSKILALGFNEKFIWTWEYYFDYSAAGFKPRTLGNYQIVLS 259 (288)
Q Consensus 181 ~~~~~~~~~~~~~~~~i~~-~~~~p~~~~~~~~~~~~~~~~~~~~~gf~~~~~~~w~~~~~~~~~~f~~g~~~~~~~~~~ 259 (288)
.+ ..++... ....++.+++.+.++++ +|+.++.......++ .+.=..|.+-.+.+++.
T Consensus 221 ~~----------~~r~~~~~~~~~~t~eEl~~lL~~a-GF~~V~i~~i~~~~~----------~~~~~~~~~~~~~v~~~ 279 (340)
T PLN02490 221 FW----------LSRFFADVWMLFPKEEEYIEWFTKA-GFKDVKLKRIGPKWY----------RGVRRHGLIMGCSVTGV 279 (340)
T ss_pred hh----------HHHHhhhhhccCCCHHHHHHHHHHC-CCeEEEEEEcChhhc----------cccccccceeeEEEEEe
Confidence 11 1111100 01235667777665554 333322211111100 11112355666789999
Q ss_pred cCCC
Q 048309 260 RPGN 263 (288)
Q Consensus 260 k~~~ 263 (288)
||..
T Consensus 280 k~~~ 283 (340)
T PLN02490 280 KPAS 283 (340)
T ss_pred cccc
Confidence 9855
|
|
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.75 E-value=3e-17 Score=134.80 Aligned_cols=116 Identities=22% Similarity=0.317 Sum_probs=97.5
Q ss_pred HHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCC
Q 048309 59 SLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYD 138 (288)
Q Consensus 59 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD 138 (288)
..+++.+...++.++||+|||.|+.+.+||++ |..|+++|.|+..++.+++.++..+++ ++..+.|+.+...++.||
T Consensus 20 s~v~~a~~~~~~g~~LDlgcG~GRNalyLA~~-G~~VtAvD~s~~al~~l~~~a~~~~l~--i~~~~~Dl~~~~~~~~yD 96 (192)
T PF03848_consen 20 SEVLEAVPLLKPGKALDLGCGEGRNALYLASQ-GFDVTAVDISPVALEKLQRLAEEEGLD--IRTRVADLNDFDFPEEYD 96 (192)
T ss_dssp HHHHHHCTTS-SSEEEEES-TTSHHHHHHHHT-T-EEEEEESSHHHHHHHHHHHHHTT-T--EEEEE-BGCCBS-TTTEE
T ss_pred HHHHHHHhhcCCCcEEEcCCCCcHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHhhcCce--eEEEEecchhccccCCcC
Confidence 34555566556789999999999999999997 899999999999999999999988884 999999999888668999
Q ss_pred EEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 139 RIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 139 ~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
+|++..+++|+.++....+++++.+.++|||++++.+..
T Consensus 97 ~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~ 135 (192)
T PF03848_consen 97 FIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTFM 135 (192)
T ss_dssp EEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred EEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEec
Confidence 999999999998889999999999999999999986654
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=4e-17 Score=137.22 Aligned_cols=149 Identities=16% Similarity=0.201 Sum_probs=118.8
Q ss_pred hhHHHHHhhhhhcCChHHHHHhhhhhcCCC----CCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHcc
Q 048309 16 NQKSYFLRHISRKNSLAQAHRNISYHYDLD----EDEDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQT 91 (288)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~a~~Yd~~----~~~~l~~a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~ 91 (288)
.+++..++..+|+.++...+...+ ++|.. ....+ ........+++.+.+.++.+|||+|||+|..+..+++..
T Consensus 18 ~~v~~a~~~vpR~~fv~~~~~~~a-y~d~~~~~~~~~~~--~~p~~~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~ 94 (205)
T PRK13944 18 ERVKKAMLSVPREEFVMPEYRMMA-YEDRPLPLFAGATI--SAPHMVAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAI 94 (205)
T ss_pred HHHHHHHHhCCHhHcCChhHHhcC-ccCCCcccCCCCEe--chHHHHHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhc
Confidence 577888999999999998887654 45533 11112 122345677788888889999999999999999988762
Q ss_pred --CCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccC
Q 048309 92 --GCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKD 168 (288)
Q Consensus 92 --~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~Lkpg 168 (288)
..+|+++|+++++++.|+++++..++..+++++.+|..+.. ..++||+|++..++++++ +++.+.|+||
T Consensus 95 ~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~~~~~--------~~l~~~L~~g 166 (205)
T PRK13944 95 ERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAPFDAIIVTAAASTIP--------SALVRQLKDG 166 (205)
T ss_pred CCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCCCccEEEEccCcchhh--------HHHHHhcCcC
Confidence 46999999999999999999998887667999999998754 557999999999888773 2567899999
Q ss_pred cEEEEEe
Q 048309 169 GLLVLQF 175 (288)
Q Consensus 169 G~l~~~~ 175 (288)
|++++..
T Consensus 167 G~lvi~~ 173 (205)
T PRK13944 167 GVLVIPV 173 (205)
T ss_pred cEEEEEE
Confidence 9998854
|
|
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.9e-17 Score=141.04 Aligned_cols=128 Identities=16% Similarity=0.215 Sum_probs=97.6
Q ss_pred CChHHHHHhhhhhcCCCCCC---CHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHH
Q 048309 29 NSLAQAHRNISYHYDLDEDE---DLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQM 105 (288)
Q Consensus 29 ~~~~~~~~~~a~~Yd~~~~~---~l~~a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~ 105 (288)
..+...|+.++..||..+.. ......++.+...+.... .++.+|||+|||||.++..+++..+.+|+|+|+|++|+
T Consensus 9 ~~v~~~f~~iA~~YD~~n~~~s~g~~~~wr~~~~~~l~~~~-~~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml 87 (226)
T PRK05785 9 EELQEAYNKIPKAYDRANRFISFNQDVRWRAELVKTILKYC-GRPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENML 87 (226)
T ss_pred HHHHHHHHhhhHHHHHhhhhccCCCcHHHHHHHHHHHHHhc-CCCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHH
Confidence 34667899999999975321 111222222222222211 24679999999999999999886456999999999999
Q ss_pred HHHHHHHHHcCCCCceEEEEcccCCCC-CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccC
Q 048309 106 KYAEMKVNEAGLQDHIRLYLCDYRQLP-KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKD 168 (288)
Q Consensus 106 ~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~Lkpg 168 (288)
+.|++. ...+++|+++++ ++++||+|++.++++|+ .++.++++++.++|||.
T Consensus 88 ~~a~~~---------~~~~~~d~~~lp~~d~sfD~v~~~~~l~~~--~d~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 88 KMNLVA---------DDKVVGSFEALPFRDKSFDVVMSSFALHAS--DNIEKVIAEFTRVSRKQ 140 (226)
T ss_pred HHHHhc---------cceEEechhhCCCCCCCEEEEEecChhhcc--CCHHHHHHHHHHHhcCc
Confidence 998764 135789999998 78999999999999999 78899999999999994
|
|
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.1e-16 Score=140.35 Aligned_cols=113 Identities=20% Similarity=0.272 Sum_probs=98.6
Q ss_pred cCCCCCCEEEEECCcccHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CCCCCCEEE
Q 048309 65 ARVSKEHEVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAKKYDRII 141 (288)
Q Consensus 65 ~~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~~fD~I~ 141 (288)
..+.++.+|||+|||+|..+..+++. +..+|+|+|+++.+++.|+++....++ .+++++.+|+.+++ ++++||+|+
T Consensus 73 ~~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~-~~v~~~~~d~~~l~~~~~~fD~Vi 151 (272)
T PRK11873 73 AELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGY-TNVEFRLGEIEALPVADNSVDVII 151 (272)
T ss_pred ccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCC-CCEEEEEcchhhCCCCCCceeEEE
Confidence 45678999999999999988877765 335899999999999999999988887 48999999999887 667999999
Q ss_pred EccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCCC
Q 048309 142 SCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPD 180 (288)
Q Consensus 142 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 180 (288)
+..+++|. .+...+++++.++|||||++++.++....
T Consensus 152 ~~~v~~~~--~d~~~~l~~~~r~LkpGG~l~i~~~~~~~ 188 (272)
T PRK11873 152 SNCVINLS--PDKERVFKEAFRVLKPGGRFAISDVVLRG 188 (272)
T ss_pred EcCcccCC--CCHHHHHHHHHHHcCCCcEEEEEEeeccC
Confidence 99999988 67788999999999999999998876443
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.73 E-value=3e-17 Score=140.72 Aligned_cols=150 Identities=21% Similarity=0.271 Sum_probs=119.4
Q ss_pred CChHHHHHhhhhhcCCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHcc--CCEEEEEcCCHHHHH
Q 048309 29 NSLAQAHRNISYHYDLDEDEDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQT--GCNYTGITLSAEQMK 106 (288)
Q Consensus 29 ~~~~~~~~~~a~~Yd~~~~~~l~~a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~giD~s~~~~~ 106 (288)
..+...|++++..||......-..........++..+...++.+|||+|||+|.++..++... ..+++++|+++.+++
T Consensus 11 ~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~ 90 (239)
T PRK00216 11 EKVAEMFDSIAPKYDLMNDLLSFGLHRVWRRKTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLA 90 (239)
T ss_pred HHHHHHHHHhhhhHHHHHHHHhcCCcHHHHHHHHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHH
Confidence 355678899999998431100001122344556667766778899999999999999998873 489999999999999
Q ss_pred HHHHHHHHcCCCCceEEEEcccCCCC-CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCCC
Q 048309 107 YAEMKVNEAGLQDHIRLYLCDYRQLP-KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPD 180 (288)
Q Consensus 107 ~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 180 (288)
.+++++...++..+++++.+|+.+.+ ..++||+|++..+++++ .+...+++++.+.|+|||.+++.+...+.
T Consensus 91 ~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~l~~~--~~~~~~l~~~~~~L~~gG~li~~~~~~~~ 163 (239)
T PRK00216 91 VGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFGLRNV--PDIDKALREMYRVLKPGGRLVILEFSKPT 163 (239)
T ss_pred HHHHhhcccccccCeEEEecccccCCCCCCCccEEEEecccccC--CCHHHHHHHHHHhccCCcEEEEEEecCCC
Confidence 99999877666567999999998877 56789999999999998 67889999999999999999988776554
|
|
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.5e-16 Score=130.95 Aligned_cols=99 Identities=16% Similarity=0.243 Sum_probs=86.0
Q ss_pred CCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCEEEEccchh
Q 048309 69 KEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMME 147 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~~~~~l~ 147 (288)
++.+|||+|||+|..+..++.. +..+|+|+|.|+.+++.++++++..+++ +++++++|+.++...++||+|++.. ++
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~-~i~~i~~d~~~~~~~~~fD~I~s~~-~~ 119 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLN-NVEIVNGRAEDFQHEEQFDVITSRA-LA 119 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCC-CeEEEecchhhccccCCccEEEehh-hh
Confidence 4789999999999999998866 5678999999999999999999988884 7999999999876567999999875 33
Q ss_pred hhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 148 AVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 148 ~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
++..+++.+.++|+|||.+++.
T Consensus 120 -----~~~~~~~~~~~~LkpgG~lvi~ 141 (181)
T TIGR00138 120 -----SLNVLLELTLNLLKVGGYFLAY 141 (181)
T ss_pred -----CHHHHHHHHHHhcCCCCEEEEE
Confidence 3467888899999999999985
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.3e-16 Score=130.13 Aligned_cols=102 Identities=18% Similarity=0.273 Sum_probs=89.8
Q ss_pred CCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCEEEEccc
Q 048309 67 VSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEM 145 (288)
Q Consensus 67 ~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~~~~~ 145 (288)
++++.+|||+|||+|..+..+++. ++++|+|+|+++.+++.|+++++..+++ +++++.+|+.+++..++||+|++..
T Consensus 43 l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~-~i~~~~~d~~~~~~~~~fDlV~~~~- 120 (187)
T PRK00107 43 LPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLK-NVTVVHGRAEEFGQEEKFDVVTSRA- 120 (187)
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCC-CEEEEeccHhhCCCCCCccEEEEcc-
Confidence 345889999999999999999875 6789999999999999999999999985 5999999999877667899999964
Q ss_pred hhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 146 MEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 146 l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
+ .++..+++.+.+.|+|||.+++..
T Consensus 121 ---~--~~~~~~l~~~~~~LkpGG~lv~~~ 145 (187)
T PRK00107 121 ---V--ASLSDLVELCLPLLKPGGRFLALK 145 (187)
T ss_pred ---c--cCHHHHHHHHHHhcCCCeEEEEEe
Confidence 2 456889999999999999999864
|
|
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=9.5e-17 Score=141.79 Aligned_cols=104 Identities=18% Similarity=0.308 Sum_probs=93.5
Q ss_pred CCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCEEEEccchhh
Q 048309 69 KEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMMEA 148 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~~~~~l~~ 148 (288)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.++++++..++ ++++...|+.....+++||+|++..+++|
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~-g~~V~avD~s~~ai~~~~~~~~~~~l--~v~~~~~D~~~~~~~~~fD~I~~~~vl~~ 196 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALL-GFDVTAVDINQQSLENLQEIAEKENL--NIRTGLYDINSASIQEEYDFILSTVVLMF 196 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEechhcccccCCccEEEEcchhhh
Confidence 4569999999999999999986 78999999999999999999988887 68999999887665689999999999999
Q ss_pred hCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 149 VGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 149 ~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
+++++...+++++.++|+|||++++..
T Consensus 197 l~~~~~~~~l~~~~~~LkpgG~~l~v~ 223 (287)
T PRK12335 197 LNRERIPAIIKNMQEHTNPGGYNLIVC 223 (287)
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 987789999999999999999977644
|
|
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.9e-17 Score=131.69 Aligned_cols=117 Identities=18% Similarity=0.195 Sum_probs=100.1
Q ss_pred HHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceE-EEEcccCCCC--CCCCC
Q 048309 61 LIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIR-LYLCDYRQLP--KAKKY 137 (288)
Q Consensus 61 l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~-~~~~d~~~~~--~~~~f 137 (288)
+-..+.......|||+|||||..-.++--.++++||++|+++.|.+++.+.+.++.. .++. +++++.++++ +++++
T Consensus 68 i~~~~gk~~K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~-~~~~~fvva~ge~l~~l~d~s~ 146 (252)
T KOG4300|consen 68 IYYFLGKSGKGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKP-LQVERFVVADGENLPQLADGSY 146 (252)
T ss_pred hHHHhcccCccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccC-cceEEEEeechhcCcccccCCe
Confidence 333444444557899999999998887655789999999999999999999988754 4676 9999999998 88999
Q ss_pred CEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCCC
Q 048309 138 DRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPD 180 (288)
Q Consensus 138 D~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 180 (288)
|+|++..+++.. +++.+.++++.++|+|||++++-..+...
T Consensus 147 DtVV~TlvLCSv--e~~~k~L~e~~rlLRpgG~iifiEHva~~ 187 (252)
T KOG4300|consen 147 DTVVCTLVLCSV--EDPVKQLNEVRRLLRPGGRIIFIEHVAGE 187 (252)
T ss_pred eeEEEEEEEecc--CCHHHHHHHHHHhcCCCcEEEEEeccccc
Confidence 999999999888 89999999999999999999997766544
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.2e-16 Score=119.94 Aligned_cols=114 Identities=20% Similarity=0.238 Sum_probs=95.4
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC--C
Q 048309 57 KHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP--K 133 (288)
Q Consensus 57 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~--~ 133 (288)
....+++.+...++.+|||+|||+|.++..+++. ++.+|+++|+++.+++.++++++..+++ +++++.+|+.... .
T Consensus 7 ~~~~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~ 85 (124)
T TIGR02469 7 VRALTLSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVS-NIVIVEGDAPEALEDS 85 (124)
T ss_pred HHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCC-ceEEEeccccccChhh
Confidence 3445677777777889999999999999999987 5679999999999999999999888774 7899999987532 3
Q ss_pred CCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEee
Q 048309 134 AKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 134 ~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
.++||+|++.....+ ..++++.+.+.|+|||.+++...
T Consensus 86 ~~~~D~v~~~~~~~~-----~~~~l~~~~~~Lk~gG~li~~~~ 123 (124)
T TIGR02469 86 LPEPDRVFIGGSGGL-----LQEILEAIWRRLRPGGRIVLNAI 123 (124)
T ss_pred cCCCCEEEECCcchh-----HHHHHHHHHHHcCCCCEEEEEec
Confidence 468999999775444 36899999999999999998653
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.1e-16 Score=135.91 Aligned_cols=144 Identities=24% Similarity=0.289 Sum_probs=114.6
Q ss_pred HHHHHhhhhhcCCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccC--CEEEEEcCCHHHHHHHH
Q 048309 32 AQAHRNISYHYDLDEDEDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTG--CNYTGITLSAEQMKYAE 109 (288)
Q Consensus 32 ~~~~~~~a~~Yd~~~~~~l~~a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~--~~v~giD~s~~~~~~a~ 109 (288)
...|+.++.+||..+...-..........+++.+...++.+|||+|||+|..+..+++... .+++++|+++.+++.++
T Consensus 2 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~ 81 (223)
T TIGR01934 2 QEMFDRIAPKYDLLNDLLSFGLHRLWRRRAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAK 81 (223)
T ss_pred HhHHHHHHhhhhHHHHHHhcccHHHHHHHHHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHH
Confidence 4568889999997522111112233445566776666889999999999999999988733 58999999999999999
Q ss_pred HHHHHcCCCCceEEEEcccCCCC-CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCCC
Q 048309 110 MKVNEAGLQDHIRLYLCDYRQLP-KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPD 180 (288)
Q Consensus 110 ~~~~~~g~~~~v~~~~~d~~~~~-~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 180 (288)
++.. ...+++++.+|+.+.+ ..++||+|++..+++|+ .++..+++++.+.|+|||.+++.+...+.
T Consensus 82 ~~~~---~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~~~~--~~~~~~l~~~~~~L~~gG~l~~~~~~~~~ 148 (223)
T TIGR01934 82 KKSE---LPLNIEFIQADAEALPFEDNSFDAVTIAFGLRNV--TDIQKALREMYRVLKPGGRLVILEFSKPA 148 (223)
T ss_pred HHhc---cCCCceEEecchhcCCCCCCcEEEEEEeeeeCCc--ccHHHHHHHHHHHcCCCcEEEEEEecCCC
Confidence 8875 2357899999999877 55789999999999998 67889999999999999999998776543
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.6e-17 Score=134.24 Aligned_cols=117 Identities=20% Similarity=0.276 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCC
Q 048309 52 VAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQ 130 (288)
Q Consensus 52 ~a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~ 130 (288)
++..+-...++..+.+....+|.|+|||+|..+..|+++ +++.++|+|.|++|++.|+++. .+++|..+|+.+
T Consensus 13 ~eRtRPa~dLla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl------p~~~f~~aDl~~ 86 (257)
T COG4106 13 DERTRPARDLLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL------PDATFEEADLRT 86 (257)
T ss_pred HhccCcHHHHHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC------CCCceecccHhh
Confidence 344555678889998888999999999999999999999 9999999999999999997764 479999999999
Q ss_pred CCCCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEee
Q 048309 131 LPKAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 131 ~~~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
+.+...+|+++++.+++++ ++-.+++.++...|+|||++.++-.
T Consensus 87 w~p~~~~dllfaNAvlqWl--pdH~~ll~rL~~~L~Pgg~LAVQmP 130 (257)
T COG4106 87 WKPEQPTDLLFANAVLQWL--PDHPELLPRLVSQLAPGGVLAVQMP 130 (257)
T ss_pred cCCCCccchhhhhhhhhhc--cccHHHHHHHHHhhCCCceEEEECC
Confidence 9988999999999999999 7788999999999999999998543
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.4e-16 Score=134.99 Aligned_cols=150 Identities=19% Similarity=0.206 Sum_probs=116.1
Q ss_pred hhHHHHHhhhhhcCChHHHHHhhhhhcCCCCCCCHH----HHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHcc
Q 048309 16 NQKSYFLRHISRKNSLAQAHRNISYHYDLDEDEDLK----VAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQT 91 (288)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~a~~Yd~~~~~~l~----~a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~ 91 (288)
.+....++..+|++.+...+...+ |... ..++. ..+......+++.+.+.++.+|||||||+|..+..+++..
T Consensus 23 ~~v~~a~~~v~R~~f~~~~~~~~~--y~d~-~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~ 99 (215)
T TIGR00080 23 KRVIDALLSVPREEFVPEHFKEYA--YVDT-PLEIGYGQTISAPHMVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIV 99 (215)
T ss_pred HHHHHHHHhCChhhhCCchhHhhC--cCCC-CcccCCCCEechHHHHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHh
Confidence 567788888999999888777664 3322 11111 1223455678888888999999999999999999998863
Q ss_pred --CCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccC
Q 048309 92 --GCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKD 168 (288)
Q Consensus 92 --~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~Lkpg 168 (288)
..+|+++|+++++++.|+++++..++ ++++++.+|..+.. ...+||+|++.....+++ +.+.+.|+||
T Consensus 100 ~~~g~V~~vD~~~~~~~~A~~~~~~~g~-~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~~~~~--------~~~~~~L~~g 170 (215)
T TIGR00080 100 GRDGLVVSIERIPELAEKAERRLRKLGL-DNVIVIVGDGTQGWEPLAPYDRIYVTAAGPKIP--------EALIDQLKEG 170 (215)
T ss_pred CCCCEEEEEeCCHHHHHHHHHHHHHCCC-CCeEEEECCcccCCcccCCCCEEEEcCCccccc--------HHHHHhcCcC
Confidence 34699999999999999999999988 58999999998754 456899999987766552 3467889999
Q ss_pred cEEEEEeec
Q 048309 169 GLLVLQFSS 177 (288)
Q Consensus 169 G~l~~~~~~ 177 (288)
|++++....
T Consensus 171 G~lv~~~~~ 179 (215)
T TIGR00080 171 GILVMPVGE 179 (215)
T ss_pred cEEEEEEcC
Confidence 999986543
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.9e-16 Score=136.67 Aligned_cols=158 Identities=16% Similarity=0.153 Sum_probs=117.2
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCC
Q 048309 57 KHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKK 136 (288)
Q Consensus 57 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~ 136 (288)
+++++...+..-.|++|||||||.|+.+..++.+....|+|+|.++....+.+..-.-.|....+..+...+++++..+.
T Consensus 103 KW~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~~~~ 182 (315)
T PF08003_consen 103 KWDRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPNLGA 182 (315)
T ss_pred hHHHHHhhhCCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccccCC
Confidence 55667777765689999999999999999998875557999999998876655444444443345555567788776689
Q ss_pred CCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCCCcccccccCchhhHhhhccCCCCCCCHHHHHHHHHHc
Q 048309 137 YDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPDARYNEYRLSSDFIKEYIFPGGCLPSLSRITSAMAAA 216 (288)
Q Consensus 137 fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~ 216 (288)
||+|+|.++++|. .++-..+.++++.|+|||.+++.+...+............+- -+.....+||...+..++++.
T Consensus 183 FDtVF~MGVLYHr--r~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa--~m~nv~FiPs~~~L~~wl~r~ 258 (315)
T PF08003_consen 183 FDTVFSMGVLYHR--RSPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYA--KMRNVWFIPSVAALKNWLERA 258 (315)
T ss_pred cCEEEEeeehhcc--CCHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCccc--CCCceEEeCCHHHHHHHHHHc
Confidence 9999999999999 889999999999999999999998876554322221111110 011113479999999988887
Q ss_pred CCh
Q 048309 217 SSL 219 (288)
Q Consensus 217 ~~~ 219 (288)
+|
T Consensus 259 -gF 260 (315)
T PF08003_consen 259 -GF 260 (315)
T ss_pred -CC
Confidence 55
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.3e-16 Score=133.02 Aligned_cols=118 Identities=17% Similarity=0.133 Sum_probs=96.4
Q ss_pred HHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCC--------------CCceEE
Q 048309 58 HSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGL--------------QDHIRL 123 (288)
Q Consensus 58 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~--------------~~~v~~ 123 (288)
+...+..+...++.+|||+|||.|..+..+|++ |.+|+|+|+|+.+++.+.+. +++ ..++++
T Consensus 23 l~~~~~~l~~~~~~rvLd~GCG~G~da~~LA~~-G~~V~gvD~S~~Ai~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~ 98 (213)
T TIGR03840 23 LVKHWPALGLPAGARVFVPLCGKSLDLAWLAEQ-GHRVLGVELSEIAVEQFFAE---NGLTPTVTQQGEFTRYRAGNIEI 98 (213)
T ss_pred HHHHHHhhCCCCCCeEEEeCCCchhHHHHHHhC-CCeEEEEeCCHHHHHHHHHH---cCCCcceeccccceeeecCceEE
Confidence 333444444456789999999999999999996 89999999999999976432 121 136899
Q ss_pred EEcccCCCC--CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCC
Q 048309 124 YLCDYRQLP--KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTP 179 (288)
Q Consensus 124 ~~~d~~~~~--~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 179 (288)
+++|+.+++ ..+.||.|+...+++|++++.+..+++.+.++|||||++++.++..+
T Consensus 99 ~~~D~~~~~~~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~ 156 (213)
T TIGR03840 99 FCGDFFALTAADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYD 156 (213)
T ss_pred EEccCCCCCcccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcC
Confidence 999999887 24689999999999999989999999999999999999888776543
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.9e-16 Score=138.55 Aligned_cols=120 Identities=16% Similarity=0.281 Sum_probs=104.3
Q ss_pred HHHHHHcCCCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCC
Q 048309 59 SLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKY 137 (288)
Q Consensus 59 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~f 137 (288)
..+++.+...++.+|||||||+|.++..++++ +..+++++|. +.+++.++++++..|+.++++++.+|+.+.+.+ .+
T Consensus 139 ~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~-~~ 216 (306)
T TIGR02716 139 QLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYP-EA 216 (306)
T ss_pred HHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCC-CC
Confidence 45667777788899999999999999999988 7789999997 899999999999999888899999999865532 47
Q ss_pred CEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCCC
Q 048309 138 DRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPD 180 (288)
Q Consensus 138 D~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 180 (288)
|+|++..++|+.+++....+++++++.|+|||++++.++..++
T Consensus 217 D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~ 259 (306)
T TIGR02716 217 DAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDD 259 (306)
T ss_pred CEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCC
Confidence 9999999999887666788999999999999999999876544
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.8e-16 Score=133.87 Aligned_cols=150 Identities=18% Similarity=0.195 Sum_probs=116.1
Q ss_pred hhHHHHHhhhhhcCChHHHHHhhhhhcCCCCC--CCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc--c
Q 048309 16 NQKSYFLRHISRKNSLAQAHRNISYHYDLDED--EDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ--T 91 (288)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~a~~Yd~~~~--~~l~~a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~--~ 91 (288)
.++...++..+|+.++...+...+. -|..-. ......+-.....+++.+.+.++.+|||||||+|..+..+++. .
T Consensus 22 ~~v~~a~~~v~R~~fvp~~~~~~ay-~d~~~~~~~g~~~~~p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~ 100 (212)
T PRK13942 22 KKVIDALLKVPRHLFVPEYLEEYAY-VDTPLEIGYGQTISAIHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGK 100 (212)
T ss_pred HHHHHHHHcCCHhhcCCchhhhcCc-CCCCccCCCCCEeCcHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCC
Confidence 4678888889999999888776642 222100 0001133455677888888899999999999999999998876 2
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcE
Q 048309 92 GCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGL 170 (288)
Q Consensus 92 ~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~ 170 (288)
..+|+++|+++++++.++++++..++ .+++++++|..... ..++||+|++.....+++ +.+.+.|||||+
T Consensus 101 ~~~V~~vE~~~~~~~~a~~~l~~~g~-~~v~~~~gd~~~~~~~~~~fD~I~~~~~~~~~~--------~~l~~~LkpgG~ 171 (212)
T PRK13942 101 SGKVVTIERIPELAEKAKKTLKKLGY-DNVEVIVGDGTLGYEENAPYDRIYVTAAGPDIP--------KPLIEQLKDGGI 171 (212)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCC-CCeEEEECCcccCCCcCCCcCEEEECCCcccch--------HHHHHhhCCCcE
Confidence 36999999999999999999998887 48999999987754 557899999987766552 245678999999
Q ss_pred EEEEe
Q 048309 171 LVLQF 175 (288)
Q Consensus 171 l~~~~ 175 (288)
+++..
T Consensus 172 lvi~~ 176 (212)
T PRK13942 172 MVIPV 176 (212)
T ss_pred EEEEE
Confidence 98854
|
|
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.4e-17 Score=122.00 Aligned_cols=95 Identities=25% Similarity=0.492 Sum_probs=82.7
Q ss_pred EEEECCcccHHHHHHHHcc----CCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CCCCCCEEEEc-cch
Q 048309 73 VLEIGCGWGTFAIEVVRQT----GCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAKKYDRIISC-EMM 146 (288)
Q Consensus 73 vLDiGcG~G~~~~~la~~~----~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~~fD~I~~~-~~l 146 (288)
|||+|||+|..+..+++.. ..+++|+|+|++|++.++++....+. +++++++|+.+++ ..++||+|++. .++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~--~~~~~~~D~~~l~~~~~~~D~v~~~~~~~ 78 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP--KVRFVQADARDLPFSDGKFDLVVCSGLSL 78 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT--TSEEEESCTTCHHHHSSSEEEEEE-TTGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC--ceEEEECCHhHCcccCCCeeEEEEcCCcc
Confidence 7999999999999998762 27999999999999999999988765 7999999999988 67899999995 459
Q ss_pred hhhCHhhHHHHHHHHhcccccCc
Q 048309 147 EAVGHEYMEEYFGCCESLLAKDG 169 (288)
Q Consensus 147 ~~~~~~~~~~~l~~~~~~LkpgG 169 (288)
+|+++++...+++++.++|+|||
T Consensus 79 ~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 79 HHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GGSSHHHHHHHHHHHHHTEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHhCCCC
Confidence 99998999999999999999998
|
|
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.9e-16 Score=133.78 Aligned_cols=120 Identities=19% Similarity=0.329 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHHcCC---CCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEccc
Q 048309 53 AQMRKHSLLIEKARV---SKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDY 128 (288)
Q Consensus 53 a~~~~~~~l~~~~~~---~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~ 128 (288)
.|......+++.+.. ..+.+|||+|||+|.++..+++. +..+++++|+++.+++.++++.. +++.++.+|+
T Consensus 15 ~q~~~~~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~-----~~~~~~~~d~ 89 (240)
T TIGR02072 15 IQREMAKRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS-----ENVQFICGDA 89 (240)
T ss_pred HHHHHHHHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC-----CCCeEEecch
Confidence 344444445444432 34579999999999999999887 56689999999999999987653 3689999999
Q ss_pred CCCC-CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCC
Q 048309 129 RQLP-KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTP 179 (288)
Q Consensus 129 ~~~~-~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 179 (288)
.+.+ ++++||+|++..+++|+ .++..++.++.++|+|||.+++.++...
T Consensus 90 ~~~~~~~~~fD~vi~~~~l~~~--~~~~~~l~~~~~~L~~~G~l~~~~~~~~ 139 (240)
T TIGR02072 90 EKLPLEDSSFDLIVSNLALQWC--DDLSQALSELARVLKPGGLLAFSTFGPG 139 (240)
T ss_pred hhCCCCCCceeEEEEhhhhhhc--cCHHHHHHHHHHHcCCCcEEEEEeCCcc
Confidence 9887 67899999999999999 6788999999999999999999766543
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.68 E-value=9.5e-16 Score=128.53 Aligned_cols=118 Identities=12% Similarity=0.181 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCC
Q 048309 52 VAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQ 130 (288)
Q Consensus 52 ~a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~ 130 (288)
.+....+..++..+ .++.+|||+|||+|..+..+++. ++.+++|+|+|+++++.|+++. .++++.++|+.+
T Consensus 28 ~~~~~~~~~~l~~~--~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~------~~~~~~~~d~~~ 99 (204)
T TIGR03587 28 AAKLAMFARALNRL--PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL------PNINIIQGSLFD 99 (204)
T ss_pred HHHHHHHHHHHHhc--CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC------CCCcEEEeeccC
Confidence 34444445555543 46779999999999999999886 6789999999999999998764 246888999888
Q ss_pred CC-CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCCC
Q 048309 131 LP-KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPD 180 (288)
Q Consensus 131 ~~-~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 180 (288)
+ ++++||+|++.++++|+++++..++++++.+++ ++.+++.++..+.
T Consensus 100 -~~~~~sfD~V~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e~~~~~ 147 (204)
T TIGR03587 100 -PFKDNFFDLVLTKGVLIHINPDNLPTAYRELYRCS--NRYILIAEYYNPS 147 (204)
T ss_pred -CCCCCCEEEEEECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEEeeCCC
Confidence 5 678999999999999998788999999999997 5677777765443
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.8e-16 Score=127.76 Aligned_cols=110 Identities=16% Similarity=0.263 Sum_probs=88.4
Q ss_pred HHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCEEEE
Q 048309 63 EKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIIS 142 (288)
Q Consensus 63 ~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~~ 142 (288)
..+....-.++||+|||.|.++..|+.+. .+++++|+|+.+++.|+++.... ++|+++++|+....++++||+|++
T Consensus 37 aaLp~~ry~~alEvGCs~G~lT~~LA~rC-d~LlavDis~~Al~~Ar~Rl~~~---~~V~~~~~dvp~~~P~~~FDLIV~ 112 (201)
T PF05401_consen 37 AALPRRRYRRALEVGCSIGVLTERLAPRC-DRLLAVDISPRALARARERLAGL---PHVEWIQADVPEFWPEGRFDLIVL 112 (201)
T ss_dssp HHHTTSSEEEEEEE--TTSHHHHHHGGGE-EEEEEEES-HHHHHHHHHHTTT----SSEEEEES-TTT---SS-EEEEEE
T ss_pred HhcCccccceeEecCCCccHHHHHHHHhh-CceEEEeCCHHHHHHHHHhcCCC---CCeEEEECcCCCCCCCCCeeEEEE
Confidence 34555555789999999999999999875 48999999999999999998654 489999999988778899999999
Q ss_pred ccchhhhCH-hhHHHHHHHHhcccccCcEEEEEee
Q 048309 143 CEMMEAVGH-EYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 143 ~~~l~~~~~-~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
..+++++++ +++..++.++...|+|||.+++.+.
T Consensus 113 SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 113 SEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp ES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 999999964 6789999999999999999999664
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.4e-16 Score=126.80 Aligned_cols=99 Identities=25% Similarity=0.452 Sum_probs=83.0
Q ss_pred CCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CCCCCCEEEEccc
Q 048309 67 VSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAKKYDRIISCEM 145 (288)
Q Consensus 67 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~~fD~I~~~~~ 145 (288)
..++.+|||||||+|.++..+++. +.+++|+|+++.+++. .++.....+..... ++++||+|+|..+
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~g~D~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~fD~i~~~~~ 87 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKR-GFEVTGVDISPQMIEK-----------RNVVFDNFDAQDPPFPDGSFDLIICNDV 87 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHT-TSEEEEEESSHHHHHH-----------TTSEEEEEECHTHHCHSSSEEEEEEESS
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEECCHHHHhh-----------hhhhhhhhhhhhhhccccchhhHhhHHH
Confidence 467889999999999999999775 6799999999999887 12344444333433 6689999999999
Q ss_pred hhhhCHhhHHHHHHHHhcccccCcEEEEEeecCC
Q 048309 146 MEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTP 179 (288)
Q Consensus 146 l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 179 (288)
++|+ .++..+++++.++|||||.+++.+....
T Consensus 88 l~~~--~d~~~~l~~l~~~LkpgG~l~~~~~~~~ 119 (161)
T PF13489_consen 88 LEHL--PDPEEFLKELSRLLKPGGYLVISDPNRD 119 (161)
T ss_dssp GGGS--SHHHHHHHHHHHCEEEEEEEEEEEEBTT
T ss_pred Hhhc--ccHHHHHHHHHHhcCCCCEEEEEEcCCc
Confidence 9999 6899999999999999999999988754
|
... |
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.1e-15 Score=129.24 Aligned_cols=116 Identities=21% Similarity=0.189 Sum_probs=94.4
Q ss_pred HHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCC--------------CCceEE
Q 048309 58 HSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGL--------------QDHIRL 123 (288)
Q Consensus 58 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~--------------~~~v~~ 123 (288)
+...+..+...++.+|||+|||.|..+..||++ |++|+|||+|+.+++.+.+ +.++ ..++++
T Consensus 26 L~~~~~~~~~~~~~rvL~~gCG~G~da~~LA~~-G~~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~~~~~~v~~ 101 (218)
T PRK13255 26 LQKYWPALALPAGSRVLVPLCGKSLDMLWLAEQ-GHEVLGVELSELAVEQFFA---ENGLTPQTRQSGEFEHYQAGEITI 101 (218)
T ss_pred HHHHHHhhCCCCCCeEEEeCCCChHhHHHHHhC-CCeEEEEccCHHHHHHHHH---HcCCCccccccccccccccCceEE
Confidence 333444445556789999999999999999996 8999999999999998643 2222 246899
Q ss_pred EEcccCCCC--CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 124 YLCDYRQLP--KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 124 ~~~d~~~~~--~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
.++|+.+++ ..+.||.|+-..+++|++++.+..+++.+.++|+|||++++.+..
T Consensus 102 ~~~D~~~l~~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~ 157 (218)
T PRK13255 102 YCGDFFALTAADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLD 157 (218)
T ss_pred EECcccCCCcccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEE
Confidence 999999986 236899999999999999999999999999999999976654443
|
|
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.2e-15 Score=129.50 Aligned_cols=115 Identities=17% Similarity=0.315 Sum_probs=97.2
Q ss_pred HHHHHHHHHcC--CCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCC
Q 048309 56 RKHSLLIEKAR--VSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPK 133 (288)
Q Consensus 56 ~~~~~l~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~ 133 (288)
.....+++.+. ..++.+|||+|||+|.++..+++. +.+|+|+|+|+++++.|++++...+...++++.++|+.+.+
T Consensus 40 ~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~- 117 (219)
T TIGR02021 40 AMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKR-GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC- 117 (219)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC-
Confidence 34455666655 457889999999999999999886 67999999999999999999987776568999999998876
Q ss_pred CCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEE
Q 048309 134 AKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVL 173 (288)
Q Consensus 134 ~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~ 173 (288)
++||+|++..+++|++.++...+++++.+++++++.+.+
T Consensus 118 -~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~ 156 (219)
T TIGR02021 118 -GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTF 156 (219)
T ss_pred -CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 789999999999999777888999999999987665554
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.5e-17 Score=123.34 Aligned_cols=95 Identities=24% Similarity=0.457 Sum_probs=66.0
Q ss_pred EEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC---CCCCCCEEEEccchhhh
Q 048309 74 LEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP---KAKKYDRIISCEMMEAV 149 (288)
Q Consensus 74 LDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~---~~~~fD~I~~~~~l~~~ 149 (288)
||||||+|.++..+++. +..+++|+|+|+.|++.+++++...+. .+......+..+.. ..++||+|++..+++|+
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGN-DNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT----EEEEE--SSS---CCC----SEEEEE-TTS--
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCC-cceeEEEeecCChhhcccccccceehhhhhHhhh
Confidence 79999999999999887 678999999999999999999888764 23444444444432 33699999999999999
Q ss_pred CHhhHHHHHHHHhcccccCcEE
Q 048309 150 GHEYMEEYFGCCESLLAKDGLL 171 (288)
Q Consensus 150 ~~~~~~~~l~~~~~~LkpgG~l 171 (288)
+++..+++++.++|+|||.|
T Consensus 80 --~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 --EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp --S-HHHHHHHHTTT-TSS-EE
T ss_pred --hhHHHHHHHHHHHcCCCCCC
Confidence 88999999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.8e-15 Score=128.37 Aligned_cols=116 Identities=22% Similarity=0.285 Sum_probs=100.0
Q ss_pred HHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CC
Q 048309 58 HSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KA 134 (288)
Q Consensus 58 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~ 134 (288)
...+++.+.+.++.+|||+|||+|.++..++.. +.++++|+|+++.+++.++++... ...++++...|+...+ ..
T Consensus 8 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~--~~~~~~~~~~d~~~~~~~~ 85 (241)
T PRK08317 8 RARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG--LGPNVEFVRGDADGLPFPD 85 (241)
T ss_pred HHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC--CCCceEEEecccccCCCCC
Confidence 345677788888999999999999999999886 357999999999999999987332 2357999999998877 66
Q ss_pred CCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 135 KKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 135 ~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
++||+|++..+++|+ .++..+++++.++|+|||.+++.+..
T Consensus 86 ~~~D~v~~~~~~~~~--~~~~~~l~~~~~~L~~gG~l~~~~~~ 126 (241)
T PRK08317 86 GSFDAVRSDRVLQHL--EDPARALAEIARVLRPGGRVVVLDTD 126 (241)
T ss_pred CCceEEEEechhhcc--CCHHHHHHHHHHHhcCCcEEEEEecC
Confidence 899999999999999 67899999999999999999987643
|
|
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.3e-15 Score=131.13 Aligned_cols=116 Identities=15% Similarity=0.239 Sum_probs=91.4
Q ss_pred HHHHHcCCCCCCEEEEECCcccH----HHHHHHHc-c-----CCEEEEEcCCHHHHHHHHHHHH----HcC---------
Q 048309 60 LLIEKARVSKEHEVLEIGCGWGT----FAIEVVRQ-T-----GCNYTGITLSAEQMKYAEMKVN----EAG--------- 116 (288)
Q Consensus 60 ~l~~~~~~~~~~~vLDiGcG~G~----~~~~la~~-~-----~~~v~giD~s~~~~~~a~~~~~----~~g--------- 116 (288)
.+++.....++.+|+|+|||+|. +++.+++. + +.+|+|+|+|+.|++.|++.+- ..+
T Consensus 90 ~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~y 169 (264)
T smart00138 90 LLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARY 169 (264)
T ss_pred HHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhh
Confidence 33333333456799999999996 55566554 2 3689999999999999997531 011
Q ss_pred -------------CCCceEEEEcccCCCC-CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 117 -------------LQDHIRLYLCDYRQLP-KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 117 -------------~~~~v~~~~~d~~~~~-~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
+..++++.++|+.+.+ +.++||+|+|.++++|++++....+++++++.|+|||.+++..
T Consensus 170 f~~~~~~~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 170 FSRVEDKYRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred EEeCCCeEEEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 1136899999999977 5789999999999999987888899999999999999999843
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.3e-15 Score=121.16 Aligned_cols=160 Identities=23% Similarity=0.308 Sum_probs=127.5
Q ss_pred hhhhhHHHHHhhhhhcCChHHHHHhhhhhcCCCCCCCHHHHHHHHHHHHHHHcC---CCCC-CEEEEECCcccHHHHHHH
Q 048309 13 SKVNQKSYFLRHISRKNSLAQAHRNISYHYDLDEDEDLKVAQMRKHSLLIEKAR---VSKE-HEVLEIGCGWGTFAIEVV 88 (288)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~Yd~~~~~~l~~a~~~~~~~l~~~~~---~~~~-~~vLDiGcG~G~~~~~la 88 (288)
++|+-+-+|-. .......++.+|=|.++-+--++++.+.+..+.+... +... .+|||+|||.|.+...|+
T Consensus 13 S~LGtK~yWD~------~Y~~El~Nfr~hgd~GEvWFg~~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~ 86 (227)
T KOG1271|consen 13 SKLGTKSYWDA------AYELELTNFREHGDEGEVWFGEDAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLA 86 (227)
T ss_pred cccchHHHHHH------HHHHHHhhcccCCCccceecCCcHHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHH
Confidence 44777777755 3445566777888887666666788888888887765 3333 399999999999999999
Q ss_pred Hc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CCCCCCEEEEccchhhhC------HhhHHHHHHH
Q 048309 89 RQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAKKYDRIISCEMMEAVG------HEYMEEYFGC 160 (288)
Q Consensus 89 ~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~~fD~I~~~~~l~~~~------~~~~~~~l~~ 160 (288)
+. .....+|+|.|+.+++.|+..++..++++.|+|.+.|+.+.. ..++||+|+--+++..++ ...+..++..
T Consensus 87 ~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~ 166 (227)
T KOG1271|consen 87 KEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDS 166 (227)
T ss_pred HhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCceeeeecCCCCcccceeeehhh
Confidence 98 445699999999999999999999999877999999999876 678999999888776652 1223567888
Q ss_pred HhcccccCcEEEEEeecC
Q 048309 161 CESLLAKDGLLVLQFSST 178 (288)
Q Consensus 161 ~~~~LkpgG~l~~~~~~~ 178 (288)
+.++|+|||.|+|..++.
T Consensus 167 v~~ll~~~gifvItSCN~ 184 (227)
T KOG1271|consen 167 VEKLLSPGGIFVITSCNF 184 (227)
T ss_pred HhhccCCCcEEEEEecCc
Confidence 999999999999976653
|
|
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.1e-15 Score=128.19 Aligned_cols=142 Identities=22% Similarity=0.336 Sum_probs=109.5
Q ss_pred hHHHHHhhhhhcCCCCC--CCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHH
Q 048309 31 LAQAHRNISYHYDLDED--EDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYA 108 (288)
Q Consensus 31 ~~~~~~~~a~~Yd~~~~--~~l~~a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a 108 (288)
....|+++++-|..... ..........+..+...+...++.+|||||||+|.++..+++. +++++++|+++.+++.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~iD~s~~~~~~a 86 (233)
T PRK05134 8 EIAKFSALAARWWDPNGEFKPLHRINPLRLNYIREHAGGLFGKRVLDVGCGGGILSESMARL-GADVTGIDASEENIEVA 86 (233)
T ss_pred HHHHHHHHHHHHhccCCCcHHHHHhhHHHHHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHc-CCeEEEEcCCHHHHHHH
Confidence 35667777774442211 1112222233445555555667889999999999999999885 77999999999999999
Q ss_pred HHHHHHcCCCCceEEEEcccCCCC--CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 109 EMKVNEAGLQDHIRLYLCDYRQLP--KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 109 ~~~~~~~g~~~~v~~~~~d~~~~~--~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
++++...+. ++++...|+.+.+ ..++||+|++..+++|+ .+...+++.+.++|+|||.+++..+.
T Consensus 87 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~~--~~~~~~l~~~~~~L~~gG~l~v~~~~ 153 (233)
T PRK05134 87 RLHALESGL--KIDYRQTTAEELAAEHPGQFDVVTCMEMLEHV--PDPASFVRACAKLVKPGGLVFFSTLN 153 (233)
T ss_pred HHHHHHcCC--ceEEEecCHHHhhhhcCCCccEEEEhhHhhcc--CCHHHHHHHHHHHcCCCcEEEEEecC
Confidence 998877665 5788888888765 55799999999999999 67789999999999999999987654
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.9e-15 Score=122.27 Aligned_cols=110 Identities=19% Similarity=0.254 Sum_probs=91.8
Q ss_pred HHHHHcCCCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCC
Q 048309 60 LLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYD 138 (288)
Q Consensus 60 ~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD 138 (288)
.+++.+...++.+|||+|||+|.++..+++. +..+|+++|+++.+++.++++++..++ .+++++.+|... ...++||
T Consensus 22 ~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~-~~i~~~~~d~~~-~~~~~~D 99 (187)
T PRK08287 22 LALSKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGC-GNIDIIPGEAPI-ELPGKAD 99 (187)
T ss_pred HHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC-CCeEEEecCchh-hcCcCCC
Confidence 4566777778899999999999999999887 567999999999999999999988887 479999998753 2346899
Q ss_pred EEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEee
Q 048309 139 RIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 139 ~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
+|++.....++ ..+++.+.+.|+|||++++...
T Consensus 100 ~v~~~~~~~~~-----~~~l~~~~~~Lk~gG~lv~~~~ 132 (187)
T PRK08287 100 AIFIGGSGGNL-----TAIIDWSLAHLHPGGRLVLTFI 132 (187)
T ss_pred EEEECCCccCH-----HHHHHHHHHhcCCCeEEEEEEe
Confidence 99998765443 6688999999999999988543
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.63 E-value=2e-15 Score=123.18 Aligned_cols=106 Identities=21% Similarity=0.441 Sum_probs=89.1
Q ss_pred CCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCEEEEccchh
Q 048309 69 KEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMME 147 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~~~~~l~ 147 (288)
++.+|||+|||+|.++..+++. +..+|+++|+++.+++.++++++.++++. ++++..|..+...+++||+|+++..++
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~-v~~~~~d~~~~~~~~~fD~Iv~NPP~~ 109 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLEN-VEVVQSDLFEALPDGKFDLIVSNPPFH 109 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTT-EEEEESSTTTTCCTTCEEEEEE---SB
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccc-cccccccccccccccceeEEEEccchh
Confidence 6779999999999999999998 55579999999999999999999999864 999999998766678999999998765
Q ss_pred hhCH---hhHHHHHHHHhcccccCcEEEEEe
Q 048309 148 AVGH---EYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 148 ~~~~---~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
.-.. .....+++++.+.|+|||.+++..
T Consensus 110 ~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~ 140 (170)
T PF05175_consen 110 AGGDDGLDLLRDFIEQARRYLKPGGRLFLVI 140 (170)
T ss_dssp TTSHCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccchhhHHHHHHHHHHhccCCCEEEEEe
Confidence 4421 346889999999999999998744
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.4e-15 Score=129.00 Aligned_cols=113 Identities=13% Similarity=0.160 Sum_probs=94.0
Q ss_pred HHHcCCCCCCEEEEECCcccHHHHH-HH-Hc-cCCEEEEEcCCHHHHHHHHHHHHH-cCCCCceEEEEcccCCCC-CCCC
Q 048309 62 IEKARVSKEHEVLEIGCGWGTFAIE-VV-RQ-TGCNYTGITLSAEQMKYAEMKVNE-AGLQDHIRLYLCDYRQLP-KAKK 136 (288)
Q Consensus 62 ~~~~~~~~~~~vLDiGcG~G~~~~~-la-~~-~~~~v~giD~s~~~~~~a~~~~~~-~g~~~~v~~~~~d~~~~~-~~~~ 136 (288)
+..+...++++|+|||||.|.++.. ++ .. ++.+++|+|+++++++.|++.++. .++.++++|.++|+.+.. ..+.
T Consensus 116 L~~~~~~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~ 195 (296)
T PLN03075 116 LSQHVNGVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKE 195 (296)
T ss_pred HHHhhcCCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCC
Confidence 3444444778999999998755433 33 33 778999999999999999999964 788778999999998875 4578
Q ss_pred CCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 137 YDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 137 fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
||+|++. +++++.++++.++++++.+.|+|||++++..
T Consensus 196 FDlVF~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 196 YDVVFLA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred cCEEEEe-cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 9999999 8888876889999999999999999999854
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.5e-15 Score=122.99 Aligned_cols=151 Identities=20% Similarity=0.230 Sum_probs=122.5
Q ss_pred hhHHHHHhhhhhcCChHHHHHhhhhhcCCC-----CCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc
Q 048309 16 NQKSYFLRHISRKNSLAQAHRNISYHYDLD-----EDEDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ 90 (288)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~a~~Yd~~-----~~~~l~~a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~ 90 (288)
.|++.-+...+|+.++...+...+ |+.. ...++ .+-.....+++.+.++++.+|||||||+|+.+.-+++-
T Consensus 18 ~~v~~A~~~vPRe~FVp~~~~~~A--Y~d~~lpi~~gqti--s~P~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l 93 (209)
T COG2518 18 ERVLKAFLAVPRELFVPAAYKHLA--YEDRALPIGCGQTI--SAPHMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARL 93 (209)
T ss_pred HHHHHHHHhCCHHhccCchhhccc--ccCCcccCCCCcee--cCcHHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHH
Confidence 678888899999999999987765 4433 11122 23345678899999999999999999999999999986
Q ss_pred cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCC-CCCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCc
Q 048309 91 TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQL-PKAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDG 169 (288)
Q Consensus 91 ~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~-~~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG 169 (288)
..+|+.+|..++..+.|+++++..|+. |+.++++|...- +....||.|+.......+|. . +.+.|++||
T Consensus 94 -~~~V~siEr~~~L~~~A~~~L~~lg~~-nV~v~~gDG~~G~~~~aPyD~I~Vtaaa~~vP~----~----Ll~QL~~gG 163 (209)
T COG2518 94 -VGRVVSIERIEELAEQARRNLETLGYE-NVTVRHGDGSKGWPEEAPYDRIIVTAAAPEVPE----A----LLDQLKPGG 163 (209)
T ss_pred -hCeEEEEEEcHHHHHHHHHHHHHcCCC-ceEEEECCcccCCCCCCCcCEEEEeeccCCCCH----H----HHHhcccCC
Confidence 449999999999999999999999994 799999999874 46689999999988887743 2 347899999
Q ss_pred EEEEEeecCCC
Q 048309 170 LLVLQFSSTPD 180 (288)
Q Consensus 170 ~l~~~~~~~~~ 180 (288)
++++-....+.
T Consensus 164 rlv~PvG~~~~ 174 (209)
T COG2518 164 RLVIPVGSGPA 174 (209)
T ss_pred EEEEEEccCCc
Confidence 99996653333
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=6.6e-15 Score=139.54 Aligned_cols=111 Identities=15% Similarity=0.256 Sum_probs=93.9
Q ss_pred CCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC---CCCCCCEEEE
Q 048309 67 VSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP---KAKKYDRIIS 142 (288)
Q Consensus 67 ~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~---~~~~fD~I~~ 142 (288)
..++.+|||+|||+|..+..+++. ++.+++|+|+|+.|++.|+++....+ .++.++++|+.+++ ++++||+|++
T Consensus 416 ~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g--~~ie~I~gDa~dLp~~fedeSFDvVVs 493 (677)
T PRK06922 416 YIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEG--RSWNVIKGDAINLSSSFEKESVDTIVY 493 (677)
T ss_pred hcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC--CCeEEEEcchHhCccccCCCCEEEEEE
Confidence 346789999999999999998876 77899999999999999998876554 36888999998865 4679999999
Q ss_pred ccchhhh-----------CHhhHHHHHHHHhcccccCcEEEEEeecCC
Q 048309 143 CEMMEAV-----------GHEYMEEYFGCCESLLAKDGLLVLQFSSTP 179 (288)
Q Consensus 143 ~~~l~~~-----------~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 179 (288)
..++|++ +.++...+++++.++|||||.+++.+...+
T Consensus 494 n~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v~~ 541 (677)
T PRK06922 494 SSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGIMT 541 (677)
T ss_pred chHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCccC
Confidence 9988875 235778999999999999999999875433
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.2e-14 Score=121.52 Aligned_cols=101 Identities=20% Similarity=0.344 Sum_probs=85.8
Q ss_pred CCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCEEEEccch
Q 048309 67 VSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMM 146 (288)
Q Consensus 67 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~~~~~l 146 (288)
..++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|++++...+...++++..+|+.. ..++||+|++..++
T Consensus 61 ~~~~~~vLDvGcG~G~~~~~l~~~-~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~--~~~~fD~v~~~~~l 137 (230)
T PRK07580 61 DLTGLRILDAGCGVGSLSIPLARR-GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLES--LLGRFDTVVCLDVL 137 (230)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchh--ccCCcCEEEEcchh
Confidence 456789999999999999999986 678999999999999999999887765679999999543 34789999999999
Q ss_pred hhhCHhhHHHHHHHHhcccccCcE
Q 048309 147 EAVGHEYMEEYFGCCESLLAKDGL 170 (288)
Q Consensus 147 ~~~~~~~~~~~l~~~~~~LkpgG~ 170 (288)
+|++.+....+++++.+.+++++.
T Consensus 138 ~~~~~~~~~~~l~~l~~~~~~~~~ 161 (230)
T PRK07580 138 IHYPQEDAARMLAHLASLTRGSLI 161 (230)
T ss_pred hcCCHHHHHHHHHHHHhhcCCeEE
Confidence 998777888899999887754443
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.8e-15 Score=123.78 Aligned_cols=106 Identities=25% Similarity=0.275 Sum_probs=87.8
Q ss_pred CCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEccc-CCCC---CCCCCCEEEEc
Q 048309 69 KEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDY-RQLP---KAKKYDRIISC 143 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~-~~~~---~~~~fD~I~~~ 143 (288)
++.+|||+|||+|..+..+++. ++.+|+|+|+|+.+++.+++++...++ .+++++++|+ ..++ ++++||+|++.
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~-~~v~~~~~d~~~~l~~~~~~~~~D~V~~~ 118 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGL-TNLRLLCGDAVEVLLDMFPDGSLDRIYLN 118 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCC-CCEEEEecCHHHHHHHHcCccccceEEEE
Confidence 5679999999999999999887 667899999999999999999988887 5799999999 5544 45789999997
Q ss_pred cchhhh------CHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 144 EMMEAV------GHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 144 ~~l~~~------~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
....+. .......+++++.++|+|||.+++.+
T Consensus 119 ~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~ 156 (202)
T PRK00121 119 FPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFAT 156 (202)
T ss_pred CCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEc
Confidence 654321 11124789999999999999999854
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.5e-14 Score=131.07 Aligned_cols=117 Identities=12% Similarity=0.213 Sum_probs=95.3
Q ss_pred HHHHHHcCCCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCC--CceEEEEcccCCCCCCC
Q 048309 59 SLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQ--DHIRLYLCDYRQLPKAK 135 (288)
Q Consensus 59 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~--~~v~~~~~d~~~~~~~~ 135 (288)
..+++.+....+.+|||+|||+|.++..+++. +..+|+++|+|+.+++.|+++++.++.. .+++++..|..+...++
T Consensus 218 rllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~~~ 297 (378)
T PRK15001 218 RFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPF 297 (378)
T ss_pred HHHHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCCCC
Confidence 34666666555679999999999999999987 6789999999999999999999877643 36899999986544446
Q ss_pred CCCEEEEccchhhh---CHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 136 KYDRIISCEMMEAV---GHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 136 ~fD~I~~~~~l~~~---~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
+||+|+|+..++.. +.....++++.+.+.|+|||.+++..
T Consensus 298 ~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 298 RFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred CEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 89999998877643 33345789999999999999999964
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.7e-14 Score=113.92 Aligned_cols=120 Identities=20% Similarity=0.229 Sum_probs=101.7
Q ss_pred CHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcc
Q 048309 49 DLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCD 127 (288)
Q Consensus 49 ~l~~a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d 127 (288)
+++....+. -.+.+|.+.++.+++|||||||..+..++.. +.++|+++|-++++++..++++++.|+ +|++++.++
T Consensus 16 p~TK~EIRa--l~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~-~n~~vv~g~ 92 (187)
T COG2242 16 PMTKEEIRA--LTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGV-DNLEVVEGD 92 (187)
T ss_pred CCcHHHHHH--HHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCC-CcEEEEecc
Confidence 344443333 4588899999999999999999999999955 788999999999999999999999997 699999999
Q ss_pred cCCCC-CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 128 YRQLP-KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 128 ~~~~~-~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
+-+.. ...++|+|+..+. .. .+.+++.+...|||||++++...+
T Consensus 93 Ap~~L~~~~~~daiFIGGg-~~-----i~~ile~~~~~l~~ggrlV~nait 137 (187)
T COG2242 93 APEALPDLPSPDAIFIGGG-GN-----IEEILEAAWERLKPGGRLVANAIT 137 (187)
T ss_pred chHhhcCCCCCCEEEECCC-CC-----HHHHHHHHHHHcCcCCeEEEEeec
Confidence 98764 2238999999887 44 488999999999999999996654
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.3e-14 Score=136.90 Aligned_cols=117 Identities=17% Similarity=0.211 Sum_probs=97.3
Q ss_pred HHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCC--CC-CC
Q 048309 58 HSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQ--LP-KA 134 (288)
Q Consensus 58 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~--~~-~~ 134 (288)
...+++.+...++.+|||||||+|.++..+++. ..+|+|+|+++.+++.+++.. +..++++++++|+.+ ++ ++
T Consensus 26 ~~~il~~l~~~~~~~vLDlGcG~G~~~~~la~~-~~~v~giD~s~~~l~~a~~~~---~~~~~i~~~~~d~~~~~~~~~~ 101 (475)
T PLN02336 26 RPEILSLLPPYEGKSVLELGAGIGRFTGELAKK-AGQVIALDFIESVIKKNESIN---GHYKNVKFMCADVTSPDLNISD 101 (475)
T ss_pred hhHHHhhcCccCCCEEEEeCCCcCHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHh---ccCCceEEEEecccccccCCCC
Confidence 345666666667789999999999999999986 569999999999998876532 222579999999964 44 56
Q ss_pred CCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecC
Q 048309 135 KKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSST 178 (288)
Q Consensus 135 ~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 178 (288)
++||+|++..+++|++.++...+++++.++|||||.+++.+...
T Consensus 102 ~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~ 145 (475)
T PLN02336 102 GSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCF 145 (475)
T ss_pred CCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccC
Confidence 79999999999999977778999999999999999999976543
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.5e-14 Score=118.72 Aligned_cols=111 Identities=21% Similarity=0.344 Sum_probs=93.2
Q ss_pred HHHHHcCCCCCCEEEEECCcccHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC--CCC
Q 048309 60 LLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP--KAK 135 (288)
Q Consensus 60 ~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~--~~~ 135 (288)
..+..+.+.++.+|||+|||+|.++..+++. ++.+|+++|+++.+++.++++++..++..+++++.+|+.+.. ..+
T Consensus 31 ~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~ 110 (198)
T PRK00377 31 LALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINE 110 (198)
T ss_pred HHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCC
Confidence 3467788889999999999999999998875 346899999999999999999998886568999999997743 346
Q ss_pred CCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 136 KYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 136 ~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
+||+|++... . ..+..+++.+.+.|+|||++++..
T Consensus 111 ~~D~V~~~~~---~--~~~~~~l~~~~~~LkpgG~lv~~~ 145 (198)
T PRK00377 111 KFDRIFIGGG---S--EKLKEIISASWEIIKKGGRIVIDA 145 (198)
T ss_pred CCCEEEECCC---c--ccHHHHHHHHHHHcCCCcEEEEEe
Confidence 8999998642 1 456789999999999999998743
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.4e-14 Score=120.07 Aligned_cols=148 Identities=16% Similarity=0.143 Sum_probs=112.4
Q ss_pred hhHHHHHhhhhhcCChHHHHHhhhhhcCCCCCCCHH----HHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHcc
Q 048309 16 NQKSYFLRHISRKNSLAQAHRNISYHYDLDEDEDLK----VAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQT 91 (288)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~a~~Yd~~~~~~l~----~a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~ 91 (288)
.++...++..+|++.+...+...+ |.... .++. -.+......+++.+.+.++.+|||+|||+|..+..+++.
T Consensus 24 ~~~~~a~~~~~r~~f~p~~~~~~a--y~d~~-~~~~~~~~~~~p~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~- 99 (212)
T PRK00312 24 ERVLEAIEATPRELFVPEAFKHKA--YENRA-LPIGCGQTISQPYMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHL- 99 (212)
T ss_pred HHHHHHHHcCCHhHcCCchHHhcC--ccCCC-ccCCCCCeeCcHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHH-
Confidence 366777888888888777776654 33221 1111 123334456777788888999999999999999888775
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcE
Q 048309 92 GCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGL 170 (288)
Q Consensus 92 ~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~ 170 (288)
..+++++|+++++++.++++++..++. +++++.+|..+.. ..++||+|++...+++++ +.+.+.|+|||.
T Consensus 100 ~~~v~~vd~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~fD~I~~~~~~~~~~--------~~l~~~L~~gG~ 170 (212)
T PRK00312 100 VRRVFSVERIKTLQWEAKRRLKQLGLH-NVSVRHGDGWKGWPAYAPFDRILVTAAAPEIP--------RALLEQLKEGGI 170 (212)
T ss_pred hCEEEEEeCCHHHHHHHHHHHHHCCCC-ceEEEECCcccCCCcCCCcCEEEEccCchhhh--------HHHHHhcCCCcE
Confidence 458999999999999999999988884 6999999986643 447899999988776652 346789999999
Q ss_pred EEEEee
Q 048309 171 LVLQFS 176 (288)
Q Consensus 171 l~~~~~ 176 (288)
+++...
T Consensus 171 lv~~~~ 176 (212)
T PRK00312 171 LVAPVG 176 (212)
T ss_pred EEEEEc
Confidence 998665
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.1e-14 Score=117.16 Aligned_cols=109 Identities=20% Similarity=0.229 Sum_probs=89.2
Q ss_pred cCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCEEEEcc
Q 048309 65 ARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCE 144 (288)
Q Consensus 65 ~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~~~~ 144 (288)
+...++.+|||+|||+|.++..+++. +.+|+++|+|+.+++.++++++..+. +++++.+|+.+.. .++||+|+++.
T Consensus 15 l~~~~~~~vLdlG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~-~~~fD~Vi~n~ 90 (179)
T TIGR00537 15 LRELKPDDVLEIGAGTGLVAIRLKGK-GKCILTTDINPFAVKELRENAKLNNV--GLDVVMTDLFKGV-RGKFDVILFNP 90 (179)
T ss_pred HHhcCCCeEEEeCCChhHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEccccccc-CCcccEEEECC
Confidence 33445679999999999999999986 44899999999999999999988775 5899999987654 35899999998
Q ss_pred chhhhCH-------------------hhHHHHHHHHhcccccCcEEEEEeec
Q 048309 145 MMEAVGH-------------------EYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 145 ~l~~~~~-------------------~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
.+++.+. .....+++++.++|+|||.+++....
T Consensus 91 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~ 142 (179)
T TIGR00537 91 PYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSS 142 (179)
T ss_pred CCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEec
Confidence 7765531 12467899999999999999986543
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.5e-14 Score=122.56 Aligned_cols=107 Identities=16% Similarity=0.268 Sum_probs=86.3
Q ss_pred CCCCCEEEEECCcccHHHHHHHHc-----cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CCCCCCEE
Q 048309 67 VSKEHEVLEIGCGWGTFAIEVVRQ-----TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAKKYDRI 140 (288)
Q Consensus 67 ~~~~~~vLDiGcG~G~~~~~la~~-----~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~~fD~I 140 (288)
..++.+|||+|||+|.++..+++. ++.+|+|+|+|++|++.|+++.... ++++.+.+...++ .+++||+|
T Consensus 58 ~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~----~~~~~~~~~~~l~~~~~~fD~V 133 (232)
T PRK06202 58 ADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP----GVTFRQAVSDELVAEGERFDVV 133 (232)
T ss_pred CCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC----CCeEEEEecccccccCCCccEE
Confidence 356779999999999998888752 3459999999999999998876443 4667777766666 56899999
Q ss_pred EEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCC
Q 048309 141 ISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTP 179 (288)
Q Consensus 141 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 179 (288)
+++.+++|+++++...+++++.++++ |.+++.+...+
T Consensus 134 ~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~ 170 (232)
T PRK06202 134 TSNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRS 170 (232)
T ss_pred EECCeeecCChHHHHHHHHHHHHhcC--eeEEEeccccC
Confidence 99999999976667889999999998 66666666554
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.5e-14 Score=129.26 Aligned_cols=118 Identities=15% Similarity=0.205 Sum_probs=98.3
Q ss_pred HHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC---C
Q 048309 58 HSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP---K 133 (288)
Q Consensus 58 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~---~ 133 (288)
...+++.+....+..+||||||+|..+..+|+. +...++|+|+++.+++.+.+++...++ .|+.++++|+..+. +
T Consensus 111 ~~~~~~~~~~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL-~NV~~i~~DA~~ll~~~~ 189 (390)
T PRK14121 111 IDNFLDFISKNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNL-KNLLIINYDARLLLELLP 189 (390)
T ss_pred HHHHHHHhcCCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCC-CcEEEEECCHHHhhhhCC
Confidence 346677777667789999999999999999998 778999999999999999999999998 48999999997642 6
Q ss_pred CCCCCEEEEccchhhhCHh----hHHHHHHHHhcccccCcEEEEEee
Q 048309 134 AKKYDRIISCEMMEAVGHE----YMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 134 ~~~fD~I~~~~~l~~~~~~----~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
++++|.|++.+...+.... ....+++.+.++|+|||.+.+.+-
T Consensus 190 ~~s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD 236 (390)
T PRK14121 190 SNSVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTD 236 (390)
T ss_pred CCceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEE
Confidence 7899999998765543111 126899999999999999998553
|
|
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.57 E-value=8.7e-14 Score=118.39 Aligned_cols=105 Identities=28% Similarity=0.466 Sum_probs=92.0
Q ss_pred CCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC--CCCCCCEEEEccch
Q 048309 69 KEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP--KAKKYDRIISCEMM 146 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~--~~~~fD~I~~~~~l 146 (288)
.+.+|||+|||+|.++..+++. +.+++++|+++.+++.+++++...+.. ++++...|+.+.+ ..++||+|++..++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~-~~~v~~iD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~D~i~~~~~l 122 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARL-GANVTGIDASEENIEVAKLHAKKDPLL-KIEYRCTSVEDLAEKGAKSFDVVTCMEVL 122 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEeCCHHHhhcCCCCCccEEEehhHH
Confidence 4779999999999999998875 668999999999999999998877652 6899999988776 34789999999999
Q ss_pred hhhCHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 147 EAVGHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 147 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
+|+ .++..+++++.+.|+|||.+++.+..
T Consensus 123 ~~~--~~~~~~l~~~~~~L~~gG~l~i~~~~ 151 (224)
T TIGR01983 123 EHV--PDPQAFIRACAQLLKPGGILFFSTIN 151 (224)
T ss_pred HhC--CCHHHHHHHHHHhcCCCcEEEEEecC
Confidence 999 77889999999999999999987654
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.3e-14 Score=121.63 Aligned_cols=148 Identities=18% Similarity=0.230 Sum_probs=111.8
Q ss_pred hhHHHHHhhhhhcCChHHHHHhhhhhcCCC-----CCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc
Q 048309 16 NQKSYFLRHISRKNSLAQAHRNISYHYDLD-----EDEDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ 90 (288)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~a~~Yd~~-----~~~~l~~a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~ 90 (288)
.+....++..+|+.++...+...+ |... ....+ .+-..+..+++.+.++++.+|||||||+|+.+..++.-
T Consensus 18 ~~v~~A~~~VpR~~Fvp~~~~~~a--Y~d~~l~i~~~~~i--s~P~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~l 93 (209)
T PF01135_consen 18 PRVLDAFRAVPREDFVPPAFRDLA--YEDRPLPIGCGQTI--SAPSMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHL 93 (209)
T ss_dssp HHHHHHHHHS-GGGCSSCGGGGGT--TSSS-EEEETTEEE----HHHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHhCchhhhcCC--CCCCCeeecceeec--hHHHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHh
Confidence 367788899999999998887753 4433 11222 34567788999999999999999999999999999886
Q ss_pred --cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CCCCCCEEEEccchhhhCHhhHHHHHHHHhccccc
Q 048309 91 --TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAK 167 (288)
Q Consensus 91 --~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~Lkp 167 (288)
....|+++|..+..++.|+++++..++. |+.++.+|...-. ....||.|++......++ .. +.+.|++
T Consensus 94 vg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~-nv~~~~gdg~~g~~~~apfD~I~v~~a~~~ip----~~----l~~qL~~ 164 (209)
T PF01135_consen 94 VGPVGRVVSVERDPELAERARRNLARLGID-NVEVVVGDGSEGWPEEAPFDRIIVTAAVPEIP----EA----LLEQLKP 164 (209)
T ss_dssp HSTTEEEEEEESBHHHHHHHHHHHHHHTTH-SEEEEES-GGGTTGGG-SEEEEEESSBBSS------HH----HHHTEEE
T ss_pred cCccceEEEECccHHHHHHHHHHHHHhccC-ceeEEEcchhhccccCCCcCEEEEeeccchHH----HH----HHHhcCC
Confidence 2347999999999999999999998884 8999999987644 567899999998877653 22 4577999
Q ss_pred CcEEEEEee
Q 048309 168 DGLLVLQFS 176 (288)
Q Consensus 168 gG~l~~~~~ 176 (288)
||++++-..
T Consensus 165 gGrLV~pi~ 173 (209)
T PF01135_consen 165 GGRLVAPIG 173 (209)
T ss_dssp EEEEEEEES
T ss_pred CcEEEEEEc
Confidence 999998544
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.4e-14 Score=120.75 Aligned_cols=106 Identities=23% Similarity=0.331 Sum_probs=88.1
Q ss_pred CCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC----CCCCCCEEEEc
Q 048309 69 KEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP----KAKKYDRIISC 143 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~----~~~~fD~I~~~ 143 (288)
...++||||||+|.++..+++. +..+++|+|+++.+++.|++++...++. +++++++|+.+++ +++++|.|+++
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~-ni~~i~~d~~~~~~~~~~~~~~d~v~~~ 94 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLK-NLHVLCGDANELLDKFFPDGSLSKVFLN 94 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCC-CEEEEccCHHHHHHhhCCCCceeEEEEE
Confidence 4569999999999999999987 7789999999999999999999988884 8999999997643 34689999998
Q ss_pred cchhhhCHh------hHHHHHHHHhcccccCcEEEEEe
Q 048309 144 EMMEAVGHE------YMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 144 ~~l~~~~~~------~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
+...+.... ....+++++.++|||||.+++.+
T Consensus 95 ~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~t 132 (194)
T TIGR00091 95 FPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKT 132 (194)
T ss_pred CCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEe
Confidence 754433110 12579999999999999999854
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.2e-14 Score=125.65 Aligned_cols=111 Identities=21% Similarity=0.257 Sum_probs=85.5
Q ss_pred HHHHHHHcCC---CCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCC----CCceEEEEcccCC
Q 048309 58 HSLLIEKARV---SKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGL----QDHIRLYLCDYRQ 130 (288)
Q Consensus 58 ~~~l~~~~~~---~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~----~~~v~~~~~d~~~ 130 (288)
++.+++.+.. .++.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.++++.+..+. ..++++..+|+.+
T Consensus 130 v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~-g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~ 208 (315)
T PLN02585 130 VEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALE-GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLES 208 (315)
T ss_pred HHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhh
Confidence 3444444432 35789999999999999999986 78999999999999999999876421 1357888899876
Q ss_pred CCCCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEE
Q 048309 131 LPKAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLV 172 (288)
Q Consensus 131 ~~~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~ 172 (288)
+ +++||+|+|..+++|++.+....+++.+.+ +.+||.++
T Consensus 209 l--~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g~liI 247 (315)
T PLN02585 209 L--SGKYDTVTCLDVLIHYPQDKADGMIAHLAS-LAEKRLII 247 (315)
T ss_pred c--CCCcCEEEEcCEEEecCHHHHHHHHHHHHh-hcCCEEEE
Confidence 5 478999999999999976666677777765 45555544
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.1e-14 Score=120.79 Aligned_cols=113 Identities=19% Similarity=0.288 Sum_probs=96.2
Q ss_pred HHHcCCCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC---CCCCC
Q 048309 62 IEKARVSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP---KAKKY 137 (288)
Q Consensus 62 ~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~---~~~~f 137 (288)
..........+|||+|||+|..+..++++ ..++++|||+++++.+.|+++++.+++..+++++++|+.++. ...+|
T Consensus 37 ~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~f 116 (248)
T COG4123 37 AAFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASF 116 (248)
T ss_pred HhhcccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhccccccc
Confidence 34455556789999999999999999998 668999999999999999999999999999999999999976 34579
Q ss_pred CEEEEccchhhh----------------CHhhHHHHHHHHhcccccCcEEEEE
Q 048309 138 DRIISCEMMEAV----------------GHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 138 D~I~~~~~l~~~----------------~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
|+|+|+..+.-. ..-+.+++++.+.++|||||.+.+.
T Consensus 117 D~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V 169 (248)
T COG4123 117 DLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFV 169 (248)
T ss_pred CEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEE
Confidence 999998755322 2234688999999999999999983
|
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=8.7e-14 Score=125.27 Aligned_cols=113 Identities=19% Similarity=0.253 Sum_probs=92.6
Q ss_pred HHHHHcCCCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCC
Q 048309 60 LLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYD 138 (288)
Q Consensus 60 ~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD 138 (288)
.+++.+......+|||+|||+|.++..+++. +..+|+++|+|+.+++.++++++.+++. .+++..|.... ..++||
T Consensus 187 lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~--~~~~~~D~~~~-~~~~fD 263 (342)
T PRK09489 187 LLLSTLTPHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLE--GEVFASNVFSD-IKGRFD 263 (342)
T ss_pred HHHHhccccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC--CEEEEcccccc-cCCCcc
Confidence 3455555445568999999999999999987 6679999999999999999999998873 57788887653 357899
Q ss_pred EEEEccchhhh---CHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 139 RIISCEMMEAV---GHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 139 ~I~~~~~l~~~---~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
+|+++..+|+. .......+++++.+.|+|||.+++..
T Consensus 264 lIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVa 303 (342)
T PRK09489 264 MIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVA 303 (342)
T ss_pred EEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEE
Confidence 99999888753 22567899999999999999998854
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.1e-13 Score=117.87 Aligned_cols=117 Identities=16% Similarity=0.247 Sum_probs=92.3
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCC
Q 048309 57 KHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKK 136 (288)
Q Consensus 57 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~ 136 (288)
.+...+..+...++.+|||+|||+|.++..+++....+++++|+++.+++.++++++..++ +++++.+|+.+...+++
T Consensus 24 ~l~~~l~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~--~~~~~~~d~~~~~~~~~ 101 (223)
T PRK14967 24 LLADALAAEGLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGV--DVDVRRGDWARAVEFRP 101 (223)
T ss_pred HHHHHHHhcccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCC--eeEEEECchhhhccCCC
Confidence 4455566666778889999999999999999886334999999999999999999988776 58899999877545578
Q ss_pred CCEEEEccchhhhC-------------------HhhHHHHHHHHhcccccCcEEEEEe
Q 048309 137 YDRIISCEMMEAVG-------------------HEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 137 fD~I~~~~~l~~~~-------------------~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
||+|+++..+...+ ......+++++.++|||||++++..
T Consensus 102 fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~ 159 (223)
T PRK14967 102 FDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQ 159 (223)
T ss_pred eeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 99999975432211 0125678899999999999999743
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.9e-14 Score=109.81 Aligned_cols=107 Identities=26% Similarity=0.498 Sum_probs=89.2
Q ss_pred CCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC---CCCCCCEEEEccch
Q 048309 70 EHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP---KAKKYDRIISCEMM 146 (288)
Q Consensus 70 ~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~---~~~~fD~I~~~~~l 146 (288)
|.+|||+|||+|.++..+++....+++|+|+++..++.++.++...++.++++++++|+.+.. ..++||+|+++..+
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 568999999999999999887438999999999999999999999988788999999998865 56899999998776
Q ss_pred hhhC------HhhHHHHHHHHhcccccCcEEEEEee
Q 048309 147 EAVG------HEYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 147 ~~~~------~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
.... .+....+++++.++|+|||.+++...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 5321 12457899999999999999998653
|
... |
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=99.54 E-value=7.8e-14 Score=123.96 Aligned_cols=147 Identities=14% Similarity=0.151 Sum_probs=100.7
Q ss_pred hcCChHHHHHhhhhhcCCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc-c-CCEEEEEcCCHHH
Q 048309 27 RKNSLAQAHRNISYHYDLDEDEDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-T-GCNYTGITLSAEQ 104 (288)
Q Consensus 27 ~~~~~~~~~~~~a~~Yd~~~~~~l~~a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~-~~~v~giD~s~~~ 104 (288)
+...+.........+|..-.. .+-.......+++.+ .++.+|||+|||+|..+..+++. . +.+|+++|+|++|
T Consensus 26 ~G~~lf~~i~~~peYy~tr~E---~~il~~~~~~ia~~~--~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~m 100 (301)
T TIGR03438 26 RGSELFEQICELPEYYPTRTE---AAILERHADEIAAAT--GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADA 100 (301)
T ss_pred hHHHHHHHHHCCCccccHHHH---HHHHHHHHHHHHHhh--CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHH
Confidence 333444444455556653211 111122223344444 36679999999999999999887 2 5799999999999
Q ss_pred HHHHHHHHHHcCCCCceEEEEcccCCC-C-CCC----CCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecC
Q 048309 105 MKYAEMKVNEAGLQDHIRLYLCDYRQL-P-KAK----KYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSST 178 (288)
Q Consensus 105 ~~~a~~~~~~~g~~~~v~~~~~d~~~~-~-~~~----~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 178 (288)
++.+++++......-++.++++|+.+. + +.. ...++++..++.++++++...+++++++.|+|||.+++..-..
T Consensus 101 L~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d~~ 180 (301)
T TIGR03438 101 LKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVDLV 180 (301)
T ss_pred HHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEeccCC
Confidence 999999877543212577899999873 3 221 2234445567888888889999999999999999999855443
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=2e-13 Score=113.92 Aligned_cols=111 Identities=21% Similarity=0.223 Sum_probs=90.3
Q ss_pred HHHHHHcCCCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCC-CC-CCC
Q 048309 59 SLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQ-LP-KAK 135 (288)
Q Consensus 59 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~-~~-~~~ 135 (288)
..++..+...++.+|||+|||+|.++..+++. ++.+|+++|+++.+++.++++++..++ .+++++.+|+.+ ++ ...
T Consensus 30 ~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~-~~v~~~~~d~~~~~~~~~~ 108 (196)
T PRK07402 30 LLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGV-KNVEVIEGSAPECLAQLAP 108 (196)
T ss_pred HHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CCeEEEECchHHHHhhCCC
Confidence 34677777788899999999999999999865 567999999999999999999998887 479999999865 22 224
Q ss_pred CCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEee
Q 048309 136 KYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 136 ~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
.+|.++.... .....+++++.+.|+|||.+++...
T Consensus 109 ~~d~v~~~~~------~~~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 109 APDRVCIEGG------RPIKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred CCCEEEEECC------cCHHHHHHHHHHhcCCCeEEEEEee
Confidence 5677765321 3457899999999999999998654
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.1e-13 Score=120.44 Aligned_cols=111 Identities=21% Similarity=0.333 Sum_probs=88.5
Q ss_pred HHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCE
Q 048309 60 LLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDR 139 (288)
Q Consensus 60 ~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~ 139 (288)
..++... .++.+|||+|||+|.++..+++....+|+|+|+++.+++.|++++..+++..++.+...+.... ..++||+
T Consensus 151 ~~l~~~~-~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~-~~~~fDl 228 (288)
T TIGR00406 151 EWLEDLD-LKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQP-IEGKADV 228 (288)
T ss_pred HHHHhhc-CCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccc-cCCCceE
Confidence 3444433 4678999999999999998887644589999999999999999999988876677777764332 3578999
Q ss_pred EEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 140 IISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 140 I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
|+++...+. ...++.++.++|+|||.++++.+.
T Consensus 229 Vvan~~~~~-----l~~ll~~~~~~LkpgG~li~sgi~ 261 (288)
T TIGR00406 229 IVANILAEV-----IKELYPQFSRLVKPGGWLILSGIL 261 (288)
T ss_pred EEEecCHHH-----HHHHHHHHHHHcCCCcEEEEEeCc
Confidence 999765443 467899999999999999996653
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.2e-13 Score=122.95 Aligned_cols=149 Identities=20% Similarity=0.200 Sum_probs=113.1
Q ss_pred hHHHHHhhhhhcCChHHHHHhhhhhcCCCCC----CC---HHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHH
Q 048309 17 QKSYFLRHISRKNSLAQAHRNISYHYDLDED----ED---LKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVR 89 (288)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~a~~Yd~~~~----~~---l~~a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~ 89 (288)
|++..++..+|+..++..+. .+..|....- .. -...+......+++.+.++++.+|||||||+|.++..+++
T Consensus 22 ~vl~a~~~vpRe~Fvp~~~~-~~~aY~D~~l~~~~~g~~~~~~~~p~l~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~ 100 (322)
T PRK13943 22 HIAKAFLEVPREEFLTKSYP-LSYVYEDIVLVSYDDGEEYSTSSQPSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSR 100 (322)
T ss_pred HHHHHHHcCCHHHcCCcchh-hhhccCCCcccccCCCcccccCCcHHHHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHH
Confidence 89999999999999997763 2233432210 00 0111234556777888888899999999999999999988
Q ss_pred ccC--CEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccc
Q 048309 90 QTG--CNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLA 166 (288)
Q Consensus 90 ~~~--~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~Lk 166 (288)
..+ ..|+++|+++++++.|+++++..++ .++.++++|..+.. ..++||+|++...+.+++ ..+.+.|+
T Consensus 101 ~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~-~nV~~i~gD~~~~~~~~~~fD~Ii~~~g~~~ip--------~~~~~~Lk 171 (322)
T PRK13943 101 VVGEKGLVVSVEYSRKICEIAKRNVRRLGI-ENVIFVCGDGYYGVPEFAPYDVIFVTVGVDEVP--------ETWFTQLK 171 (322)
T ss_pred hcCCCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCChhhcccccCCccEEEECCchHHhH--------HHHHHhcC
Confidence 632 4799999999999999999998888 57999999987655 446899999987666552 23567899
Q ss_pred cCcEEEEEe
Q 048309 167 KDGLLVLQF 175 (288)
Q Consensus 167 pgG~l~~~~ 175 (288)
|||.+++..
T Consensus 172 pgG~Lvv~~ 180 (322)
T PRK13943 172 EGGRVIVPI 180 (322)
T ss_pred CCCEEEEEe
Confidence 999988854
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.2e-13 Score=119.99 Aligned_cols=109 Identities=20% Similarity=0.360 Sum_probs=88.3
Q ss_pred CCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCEEEEccch
Q 048309 68 SKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMM 146 (288)
Q Consensus 68 ~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~~~~~l 146 (288)
.++.+|||+|||+|.++..+++. ++.+|+|+|+|+.+++.|+++++..++.++++++++|+.+..+.++||+|+++...
T Consensus 120 ~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~NPPy 199 (284)
T TIGR03533 120 EPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSNPPY 199 (284)
T ss_pred CCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEECCCC
Confidence 45579999999999999999987 66799999999999999999999998877899999998653344689999997421
Q ss_pred ------hhhC-----------------HhhHHHHHHHHhcccccCcEEEEEee
Q 048309 147 ------EAVG-----------------HEYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 147 ------~~~~-----------------~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
.++. ......+++.+.+.|+|||++++...
T Consensus 200 ~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g 252 (284)
T TIGR03533 200 VDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVG 252 (284)
T ss_pred CCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 1111 02346789999999999999998543
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.52 E-value=2e-13 Score=115.34 Aligned_cols=113 Identities=19% Similarity=0.235 Sum_probs=95.5
Q ss_pred HHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHH-------------HcCCCCceEEEEccc
Q 048309 62 IEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVN-------------EAGLQDHIRLYLCDY 128 (288)
Q Consensus 62 ~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~-------------~~g~~~~v~~~~~d~ 128 (288)
+..+...++.+||+.|||.|..+..||++ |.+|+|+|+|+.+++.+.+... ..+ .+++++++|+
T Consensus 36 ~~~l~~~~~~rvLvPgCGkg~D~~~LA~~-G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~--~~i~~~~gD~ 112 (226)
T PRK13256 36 FSKLNINDSSVCLIPMCGCSIDMLFFLSK-GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKG--DDIEIYVADI 112 (226)
T ss_pred HHhcCCCCCCeEEEeCCCChHHHHHHHhC-CCcEEEEecCHHHHHHHHHHcCCCcceecccccceecc--CceEEEEccC
Confidence 34455556789999999999999999997 8899999999999998755210 012 3799999999
Q ss_pred CCCCC----CCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 129 RQLPK----AKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 129 ~~~~~----~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
.+++. .+.||+|+-..++++++++.+.++.+.+.++|+|||.+++.++.
T Consensus 113 f~l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~ 165 (226)
T PRK13256 113 FNLPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVME 165 (226)
T ss_pred cCCCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEe
Confidence 99862 36899999999999999999999999999999999999997764
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.6e-13 Score=120.30 Aligned_cols=95 Identities=19% Similarity=0.336 Sum_probs=77.4
Q ss_pred CCCCEEEEECCcccHHHHHHHHc-c---CCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CCCCCCEEEE
Q 048309 68 SKEHEVLEIGCGWGTFAIEVVRQ-T---GCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAKKYDRIIS 142 (288)
Q Consensus 68 ~~~~~vLDiGcG~G~~~~~la~~-~---~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~~fD~I~~ 142 (288)
.++.+|||+|||+|.++..+++. + +..++|+|+|+.+++.|+++. +++.+.++|+.+++ .+++||+|++
T Consensus 84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~------~~~~~~~~d~~~lp~~~~sfD~I~~ 157 (272)
T PRK11088 84 EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY------PQVTFCVASSHRLPFADQSLDAIIR 157 (272)
T ss_pred CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC------CCCeEEEeecccCCCcCCceeEEEE
Confidence 45578999999999999998875 2 247999999999999987653 36899999999988 6789999998
Q ss_pred ccchhhhCHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 143 CEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 143 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
..+- ..++++.++|||||.+++....
T Consensus 158 ~~~~---------~~~~e~~rvLkpgG~li~~~p~ 183 (272)
T PRK11088 158 IYAP---------CKAEELARVVKPGGIVITVTPG 183 (272)
T ss_pred ecCC---------CCHHHHHhhccCCCEEEEEeCC
Confidence 6541 2356788999999999986543
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=99.50 E-value=6.7e-13 Score=117.07 Aligned_cols=119 Identities=14% Similarity=0.229 Sum_probs=91.7
Q ss_pred HHHHHHHcC-CCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCC
Q 048309 58 HSLLIEKAR-VSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAK 135 (288)
Q Consensus 58 ~~~l~~~~~-~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~ 135 (288)
+..++..+. ..++.+|||+|||+|.++..++.. ++.+|+|+|+|+.+++.|+++++..++..+++++++|+.+..+..
T Consensus 102 v~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~~ 181 (284)
T TIGR00536 102 VEKALASLISQNPILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAGQ 181 (284)
T ss_pred HHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcCC
Confidence 344444432 223369999999999999999987 567999999999999999999999888656999999987643444
Q ss_pred CCCEEEEccc-------------hhhhCH----------hhHHHHHHHHhcccccCcEEEEEee
Q 048309 136 KYDRIISCEM-------------MEAVGH----------EYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 136 ~fD~I~~~~~-------------l~~~~~----------~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
+||+|+++.. ..|-+. ..+..+++++.++|+|||.+++...
T Consensus 182 ~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g 245 (284)
T TIGR00536 182 KIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIG 245 (284)
T ss_pred CccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence 8999999632 122111 2467789999999999999988553
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=99.50 E-value=5.4e-13 Score=120.11 Aligned_cols=115 Identities=21% Similarity=0.293 Sum_probs=94.6
Q ss_pred HHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CCCCCC
Q 048309 60 LLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAKKYD 138 (288)
Q Consensus 60 ~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~~fD 138 (288)
.++.....+++.+|||+|||+|.++..++. .+.+++|+|+++.|++.++.+++..|++ ++++.++|+.+++ .+++||
T Consensus 173 ~~~~l~~~~~g~~vLDp~cGtG~~lieaa~-~~~~v~g~Di~~~~~~~a~~nl~~~g~~-~i~~~~~D~~~l~~~~~~~D 250 (329)
T TIGR01177 173 AMVNLARVTEGDRVLDPFCGTGGFLIEAGL-MGAKVIGCDIDWKMVAGARINLEHYGIE-DFFVKRGDATKLPLSSESVD 250 (329)
T ss_pred HHHHHhCCCCcCEEEECCCCCCHHHHHHHH-hCCeEEEEcCCHHHHHHHHHHHHHhCCC-CCeEEecchhcCCcccCCCC
Confidence 344555677889999999999999988776 4789999999999999999999999985 4899999999988 568999
Q ss_pred EEEEccchhhh-------CHhhHHHHHHHHhcccccCcEEEEEee
Q 048309 139 RIISCEMMEAV-------GHEYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 139 ~I~~~~~l~~~-------~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
+|+++..+... .......+++++.++|+|||++++...
T Consensus 251 ~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~ 295 (329)
T TIGR01177 251 AIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVP 295 (329)
T ss_pred EEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEc
Confidence 99997543211 112368899999999999999988544
|
This family is found exclusively in the Archaea. |
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=5.5e-13 Score=118.57 Aligned_cols=106 Identities=21% Similarity=0.367 Sum_probs=86.8
Q ss_pred CCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCEEEEccch--
Q 048309 70 EHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMM-- 146 (288)
Q Consensus 70 ~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~~~~~l-- 146 (288)
+.+|||+|||+|.++..++.. +..+|+++|+|+.+++.|+++++..++..+++++++|+.+..+.++||+|+++...
T Consensus 134 ~~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsNPPyi~ 213 (307)
T PRK11805 134 VTRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSNPPYVD 213 (307)
T ss_pred CCEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEECCCCCC
Confidence 368999999999999999987 67899999999999999999999988866799999998654344689999997421
Q ss_pred ----h-------hhC----------HhhHHHHHHHHhcccccCcEEEEEe
Q 048309 147 ----E-------AVG----------HEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 147 ----~-------~~~----------~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
. |-+ .+....+++++.+.|+|||.+++..
T Consensus 214 ~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~ 263 (307)
T PRK11805 214 AEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEV 263 (307)
T ss_pred ccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 1 111 1234678999999999999999854
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=5.1e-13 Score=110.34 Aligned_cols=108 Identities=19% Similarity=0.327 Sum_probs=88.0
Q ss_pred CCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCc-eEEEEcccCCCCCCCCCCEEEEccc
Q 048309 67 VSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDH-IRLYLCDYRQLPKAKKYDRIISCEM 145 (288)
Q Consensus 67 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~-v~~~~~d~~~~~~~~~fD~I~~~~~ 145 (288)
..++.+|||+|||+|.++..++.. +.+++++|+|+.+++.+++++...++..+ +.++++|+.+....++||+|+++..
T Consensus 21 ~~~~~~vLd~G~G~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi~n~p 99 (188)
T PRK14968 21 DKKGDRVLEVGTGSGIVAIVAAKN-GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILFNPP 99 (188)
T ss_pred ccCCCEEEEEccccCHHHHHHHhh-cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceEEEECCC
Confidence 357789999999999999999987 78999999999999999999988877433 8899999877544458999998765
Q ss_pred hhhh-------------------CHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 146 MEAV-------------------GHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 146 l~~~-------------------~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
+.+. +......+++++.++|+|||.+++..
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~ 148 (188)
T PRK14968 100 YLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQ 148 (188)
T ss_pred cCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 4321 12345778999999999999988753
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.50 E-value=3e-13 Score=117.01 Aligned_cols=117 Identities=20% Similarity=0.352 Sum_probs=92.4
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCC
Q 048309 56 RKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKA 134 (288)
Q Consensus 56 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~ 134 (288)
..+..+++.+. ..+.+|||+|||+|.++..+++. +..+++|+|+++.+++.+++++...+++ +++++++|+.+..+.
T Consensus 75 ~l~~~~l~~~~-~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~~ 152 (251)
T TIGR03534 75 ELVEAALERLK-KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLD-NVTFLQSDWFEPLPG 152 (251)
T ss_pred HHHHHHHHhcc-cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhccCcC
Confidence 44455566554 34569999999999999999987 6679999999999999999999988884 799999999774456
Q ss_pred CCCCEEEEccchhh------hCH------------------hhHHHHHHHHhcccccCcEEEEE
Q 048309 135 KKYDRIISCEMMEA------VGH------------------EYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 135 ~~fD~I~~~~~l~~------~~~------------------~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
++||+|+++..+.. +.. .....+++++.++|+|||.+++.
T Consensus 153 ~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~ 216 (251)
T TIGR03534 153 GKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLE 216 (251)
T ss_pred CceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEE
Confidence 79999999654321 111 12347889999999999999984
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.49 E-value=6.9e-13 Score=114.87 Aligned_cols=97 Identities=22% Similarity=0.268 Sum_probs=77.2
Q ss_pred CCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCEEEEccchh
Q 048309 68 SKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMME 147 (288)
Q Consensus 68 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~~~~~l~ 147 (288)
.++.+|||+|||+|.++..+++....+|+|+|+|+.+++.|+++++.+++..++.+..+| .+||+|+++...+
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~-------~~fD~Vvani~~~ 190 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGD-------LKADVIVANILAN 190 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCC-------CCcCEEEEcCcHH
Confidence 478899999999999998877753346999999999999999999988774344443332 2799999875433
Q ss_pred hhCHhhHHHHHHHHhcccccCcEEEEEee
Q 048309 148 AVGHEYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 148 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
....++.++.++|||||.++++.+
T Consensus 191 -----~~~~l~~~~~~~LkpgG~lilsgi 214 (250)
T PRK00517 191 -----PLLELAPDLARLLKPGGRLILSGI 214 (250)
T ss_pred -----HHHHHHHHHHHhcCCCcEEEEEEC
Confidence 346789999999999999999654
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=5e-13 Score=113.59 Aligned_cols=105 Identities=21% Similarity=0.170 Sum_probs=83.7
Q ss_pred HHcCCCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCC----CCCCCC
Q 048309 63 EKARVSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQL----PKAKKY 137 (288)
Q Consensus 63 ~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~----~~~~~f 137 (288)
+.+.+.++.+|||+|||+|.++..+++. ...+|+|+|+++.|++.+.++++.. .|+.++.+|+.+. +..++|
T Consensus 66 ~~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~---~nv~~i~~D~~~~~~~~~l~~~~ 142 (226)
T PRK04266 66 KNFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER---KNIIPILADARKPERYAHVVEKV 142 (226)
T ss_pred hhCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc---CCcEEEECCCCCcchhhhccccC
Confidence 3578889999999999999999999987 3458999999999999887776653 4789999998752 124679
Q ss_pred CEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 138 DRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 138 D~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
|+|++.... +.....+++++.++|||||.+++.
T Consensus 143 D~i~~d~~~----p~~~~~~L~~~~r~LKpGG~lvI~ 175 (226)
T PRK04266 143 DVIYQDVAQ----PNQAEIAIDNAEFFLKDGGYLLLA 175 (226)
T ss_pred CEEEECCCC----hhHHHHHHHHHHHhcCCCcEEEEE
Confidence 999965321 123355789999999999999995
|
|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.3e-13 Score=109.68 Aligned_cols=97 Identities=14% Similarity=0.280 Sum_probs=82.7
Q ss_pred CCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCC-C--CCCCCCEEEEcc
Q 048309 68 SKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQL-P--KAKKYDRIISCE 144 (288)
Q Consensus 68 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~-~--~~~~fD~I~~~~ 144 (288)
+++.+|||+|||.|.+...|.+..+++..|+|++++.+..|.++ .+.++++|+.+- . ++++||.|+++.
T Consensus 12 ~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r--------Gv~Viq~Dld~gL~~f~d~sFD~VIlsq 83 (193)
T PF07021_consen 12 EPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR--------GVSVIQGDLDEGLADFPDQSFDYVILSQ 83 (193)
T ss_pred CCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc--------CCCEEECCHHHhHhhCCCCCccEEehHh
Confidence 48899999999999999999887788999999999998887654 367999999873 3 789999999999
Q ss_pred chhhhCHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 145 MMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 145 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
+++++ .++..+++++.|+ |...++++.+
T Consensus 84 tLQ~~--~~P~~vL~EmlRV---gr~~IVsFPN 111 (193)
T PF07021_consen 84 TLQAV--RRPDEVLEEMLRV---GRRAIVSFPN 111 (193)
T ss_pred HHHhH--hHHHHHHHHHHHh---cCeEEEEecC
Confidence 99999 7889998888655 7777775544
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=5e-13 Score=112.52 Aligned_cols=114 Identities=15% Similarity=0.176 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHcC-CCCCCEEEEECCcccHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccC
Q 048309 53 AQMRKHSLLIEKAR-VSKEHEVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYR 129 (288)
Q Consensus 53 a~~~~~~~l~~~~~-~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~ 129 (288)
...-++..+.+... ++++.+|||||||+|.++..+++. ....|+|||+++ + .+. .+++++++|+.
T Consensus 34 r~~~kl~~~~~~~~~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~----------~~~-~~v~~i~~D~~ 101 (209)
T PRK11188 34 RAWFKLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M----------DPI-VGVDFLQGDFR 101 (209)
T ss_pred hHHHhhHHHHHHhccCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c----------cCC-CCcEEEecCCC
Confidence 33345556666666 578889999999999999999887 346899999988 1 123 36899999998
Q ss_pred CCC---------CCCCCCEEEEccchhhhCHh---------hHHHHHHHHhcccccCcEEEEEeecC
Q 048309 130 QLP---------KAKKYDRIISCEMMEAVGHE---------YMEEYFGCCESLLAKDGLLVLQFSST 178 (288)
Q Consensus 130 ~~~---------~~~~fD~I~~~~~l~~~~~~---------~~~~~l~~~~~~LkpgG~l~~~~~~~ 178 (288)
+.+ ..++||+|+|..+.++.+.. ....+++.+.++|+|||.+++..+..
T Consensus 102 ~~~~~~~i~~~~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~ 168 (209)
T PRK11188 102 DELVLKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQG 168 (209)
T ss_pred ChHHHHHHHHHhCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecC
Confidence 842 45789999997655443211 12568999999999999999976543
|
|
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.47 E-value=6.6e-13 Score=115.66 Aligned_cols=104 Identities=21% Similarity=0.309 Sum_probs=84.2
Q ss_pred CCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCEEEEccchhh
Q 048309 69 KEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMMEA 148 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~~~~~l~~ 148 (288)
++.+|||+|||+|.+++..++-...+|+|+|++|.+++.|+++++.++++..++....+....+..++||+|+++-. -
T Consensus 162 ~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANIL-A- 239 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANIL-A- 239 (300)
T ss_pred CCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehhh-H-
Confidence 78999999999999999998864456999999999999999999999986434444444444445579999999742 2
Q ss_pred hCHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 149 VGHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 149 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
+-...+...+.+.|||||.++++-+-
T Consensus 240 ---~vl~~La~~~~~~lkpgg~lIlSGIl 265 (300)
T COG2264 240 ---EVLVELAPDIKRLLKPGGRLILSGIL 265 (300)
T ss_pred ---HHHHHHHHHHHHHcCCCceEEEEeeh
Confidence 33568889999999999999997643
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.2e-12 Score=109.52 Aligned_cols=118 Identities=15% Similarity=0.143 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEccc
Q 048309 51 KVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDY 128 (288)
Q Consensus 51 ~~a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~ 128 (288)
...+.+.+..+++.. ++++|||+|||+|..+..++.. ...+|+++|+++++++.|+++++..|+.++++++.+|+
T Consensus 53 ~~~~g~~L~~l~~~~---~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda 129 (234)
T PLN02781 53 PVDEGLFLSMLVKIM---NAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDA 129 (234)
T ss_pred CHHHHHHHHHHHHHh---CCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccH
Confidence 344555555555543 5679999999999998888775 35799999999999999999999999988899999999
Q ss_pred CCCC-------CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEee
Q 048309 129 RQLP-------KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 129 ~~~~-------~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
.+.- +.++||+|++... +..+..++..+.++|+|||++++...
T Consensus 130 ~~~L~~l~~~~~~~~fD~VfiDa~-----k~~y~~~~~~~~~ll~~GG~ii~dn~ 179 (234)
T PLN02781 130 LSALDQLLNNDPKPEFDFAFVDAD-----KPNYVHFHEQLLKLVKVGGIIAFDNT 179 (234)
T ss_pred HHHHHHHHhCCCCCCCCEEEECCC-----HHHHHHHHHHHHHhcCCCeEEEEEcC
Confidence 7742 1468999998632 24567889999999999999988553
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.1e-13 Score=116.89 Aligned_cols=111 Identities=16% Similarity=0.256 Sum_probs=87.5
Q ss_pred CCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC--CCCCCCEEEEcc
Q 048309 68 SKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP--KAKKYDRIISCE 144 (288)
Q Consensus 68 ~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~--~~~~fD~I~~~~ 144 (288)
.++.+|||||||+|.++..+++. ++.+++++|+++++++.|++.+...+..++++++.+|+.++- ..++||+|++..
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~ 144 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG 144 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence 45679999999999999999887 778999999999999999999865544468999999987643 346899999863
Q ss_pred chh-hhCH-hhHHHHHHHHhcccccCcEEEEEeecC
Q 048309 145 MME-AVGH-EYMEEYFGCCESLLAKDGLLVLQFSST 178 (288)
Q Consensus 145 ~l~-~~~~-~~~~~~l~~~~~~LkpgG~l~~~~~~~ 178 (288)
.-. ..+. -...++++++.+.|+|||++++..+..
T Consensus 145 ~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~ 180 (262)
T PRK04457 145 FDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSR 180 (262)
T ss_pred CCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCC
Confidence 211 1111 123789999999999999999965543
|
|
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.4e-13 Score=109.95 Aligned_cols=134 Identities=23% Similarity=0.371 Sum_probs=102.2
Q ss_pred HHhhhhhcCCCCCCCHHHHHHHHHHHHHHHcCCCC--CCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHH
Q 048309 35 HRNISYHYDLDEDEDLKVAQMRKHSLLIEKARVSK--EHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKV 112 (288)
Q Consensus 35 ~~~~a~~Yd~~~~~~l~~a~~~~~~~l~~~~~~~~--~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~ 112 (288)
.+..|..|+.. ..+..-|.......++.+.++. +.-|||||||+|..+..+... +...+|+|+|+.|++.|.+.-
T Consensus 16 nd~eA~kYt~n--sri~~IQ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~-Gh~wiGvDiSpsML~~a~~~e 92 (270)
T KOG1541|consen 16 NDTEAPKYTQN--SRIVLIQAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDS-GHQWIGVDISPSMLEQAVERE 92 (270)
T ss_pred chhhhhhcccc--ceeeeehHHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccC-CceEEeecCCHHHHHHHHHhh
Confidence 34456667754 3344455666667777777666 678999999999999988774 789999999999999998632
Q ss_pred HHcCCCCceEEEEcccCC-CC-CCCCCCEEEEccchhhh---------CHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 113 NEAGLQDHIRLYLCDYRQ-LP-KAKKYDRIISCEMMEAV---------GHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 113 ~~~g~~~~v~~~~~d~~~-~~-~~~~fD~I~~~~~l~~~---------~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
-+ -.++.+|+-. +| .+++||.+++..+++++ |...+..|+..++..|++|++.+++...
T Consensus 93 ~e------gdlil~DMG~GlpfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYp 162 (270)
T KOG1541|consen 93 LE------GDLILCDMGEGLPFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYP 162 (270)
T ss_pred hh------cCeeeeecCCCCCCCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecc
Confidence 11 2577788765 55 77999999998776543 4455678999999999999999997654
|
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.4e-12 Score=112.99 Aligned_cols=116 Identities=21% Similarity=0.361 Sum_probs=95.4
Q ss_pred HHHHHHcCCCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCC
Q 048309 59 SLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKY 137 (288)
Q Consensus 59 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~f 137 (288)
+.+++.+....+.+|||+|||.|-+++.+++. +..+++.+|++..+++.|++++..++++ +..+...|..+-..+ +|
T Consensus 148 ~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~-~~~v~~s~~~~~v~~-kf 225 (300)
T COG2813 148 RLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVE-NTEVWASNLYEPVEG-KF 225 (300)
T ss_pred HHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCC-ccEEEEecccccccc-cc
Confidence 55677777777779999999999999999998 7789999999999999999999999885 446777777664443 99
Q ss_pred CEEEEccchhhh---CHhhHHHHHHHHhcccccCcEEEEEee
Q 048309 138 DRIISCEMMEAV---GHEYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 138 D~I~~~~~l~~~---~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
|.|+|+..+|.= ...--.++++...+.|++||.|.+...
T Consensus 226 d~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 226 DLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred cEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 999999988742 112234899999999999999998544
|
|
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.9e-12 Score=112.42 Aligned_cols=117 Identities=19% Similarity=0.342 Sum_probs=90.2
Q ss_pred HHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCC
Q 048309 58 HSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKK 136 (288)
Q Consensus 58 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~ 136 (288)
+..++......++.+|||+|||+|..+..++.. +..+++|+|+|+.+++.+++++. .....+++++.+|+.+....++
T Consensus 97 ~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~-~~~~~~i~~~~~d~~~~~~~~~ 175 (275)
T PRK09328 97 VEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK-HGLGARVEFLQGDWFEPLPGGR 175 (275)
T ss_pred HHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hCCCCcEEEEEccccCcCCCCc
Confidence 344444555567789999999999999999987 56899999999999999999987 3333579999999865434578
Q ss_pred CCEEEEccchhh------h------------------CHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 137 YDRIISCEMMEA------V------------------GHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 137 fD~I~~~~~l~~------~------------------~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
||+|+++....- + +.+....+++++.++|+|||.+++..
T Consensus 176 fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~ 238 (275)
T PRK09328 176 FDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI 238 (275)
T ss_pred eeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 999999643211 1 01335678899999999999999843
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=99.44 E-value=6e-13 Score=112.42 Aligned_cols=119 Identities=26% Similarity=0.316 Sum_probs=94.3
Q ss_pred HHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHH-c------C----CCCceEEEEc
Q 048309 58 HSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNE-A------G----LQDHIRLYLC 126 (288)
Q Consensus 58 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~-~------g----~~~~v~~~~~ 126 (288)
+...++.+...++.+||..|||.|..+..|+++ |.+|+|+|+|+.+++.+.+.... . + -.++|++.++
T Consensus 26 L~~~~~~l~~~~~~rvLvPgCG~g~D~~~La~~-G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~g 104 (218)
T PF05724_consen 26 LVEYLDSLALKPGGRVLVPGCGKGYDMLWLAEQ-GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCG 104 (218)
T ss_dssp HHHHHHHHTTSTSEEEEETTTTTSCHHHHHHHT-TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES
T ss_pred HHHHHHhcCCCCCCeEEEeCCCChHHHHHHHHC-CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEc
Confidence 344455567778889999999999999999997 88999999999999988433211 0 0 0146899999
Q ss_pred ccCCCC--CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 127 DYRQLP--KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 127 d~~~~~--~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
|+.+++ ..++||+|+=..+++.++++.+.++.+.+.++|+|||.+++.+..
T Consensus 105 DfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~ 157 (218)
T PF05724_consen 105 DFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLE 157 (218)
T ss_dssp -TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEE
T ss_pred ccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEE
Confidence 999987 335899999999999999999999999999999999996665554
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.6e-12 Score=120.20 Aligned_cols=117 Identities=16% Similarity=0.141 Sum_probs=94.0
Q ss_pred HHHcCCCCCCEEEEECCcccHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCE
Q 048309 62 IEKARVSKEHEVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDR 139 (288)
Q Consensus 62 ~~~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~ 139 (288)
+..+...++.+|||+|||+|..+..+++. .+.+|+++|+++.+++.++++++..|+. +++++++|+.++.+.++||+
T Consensus 243 ~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~-~v~~~~~Da~~~~~~~~fD~ 321 (445)
T PRK14904 243 CLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGIT-IIETIEGDARSFSPEEQPDA 321 (445)
T ss_pred HHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCC-eEEEEeCcccccccCCCCCE
Confidence 34556778899999999999999888875 3468999999999999999999999984 79999999988775678999
Q ss_pred EEEccc------hh-------hhCHh-------hHHHHHHHHhcccccCcEEEEEeecCC
Q 048309 140 IISCEM------ME-------AVGHE-------YMEEYFGCCESLLAKDGLLVLQFSSTP 179 (288)
Q Consensus 140 I~~~~~------l~-------~~~~~-------~~~~~l~~~~~~LkpgG~l~~~~~~~~ 179 (288)
|++... +. +.+++ ....++..+.+.|+|||+++.++++..
T Consensus 322 Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~ 381 (445)
T PRK14904 322 ILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIE 381 (445)
T ss_pred EEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 997421 11 11111 234689999999999999999887754
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.3e-12 Score=118.89 Aligned_cols=117 Identities=17% Similarity=0.212 Sum_probs=93.5
Q ss_pred HHHHHcCCCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC---CCC
Q 048309 60 LLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP---KAK 135 (288)
Q Consensus 60 ~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~---~~~ 135 (288)
.++..+++.++.+|||+|||+|..+..+++. .+.+|+++|+++.+++.++++++..|+ +++++++|+.+.+ ..+
T Consensus 235 ~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~--~~~~~~~D~~~~~~~~~~~ 312 (427)
T PRK10901 235 LAATLLAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGL--KATVIVGDARDPAQWWDGQ 312 (427)
T ss_pred HHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCC--CeEEEEcCcccchhhcccC
Confidence 4455677788999999999999999999987 346999999999999999999999887 3789999998764 246
Q ss_pred CCCEEEEccchhhh-------------CHh-------hHHHHHHHHhcccccCcEEEEEeecC
Q 048309 136 KYDRIISCEMMEAV-------------GHE-------YMEEYFGCCESLLAKDGLLVLQFSST 178 (288)
Q Consensus 136 ~fD~I~~~~~l~~~-------------~~~-------~~~~~l~~~~~~LkpgG~l~~~~~~~ 178 (288)
+||.|++...+... .++ ...+++..+.++|||||.+++++++.
T Consensus 313 ~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 375 (427)
T PRK10901 313 PFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSI 375 (427)
T ss_pred CCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 89999965432210 111 13578999999999999999987653
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.5e-12 Score=116.42 Aligned_cols=109 Identities=18% Similarity=0.246 Sum_probs=82.9
Q ss_pred CCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHc---------CCCCceEEEEcccCCC------CC
Q 048309 69 KEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEA---------GLQDHIRLYLCDYRQL------PK 133 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~---------g~~~~v~~~~~d~~~~------~~ 133 (288)
++.+|||+|||-|+....+....-..++|+|+++..++.|+++.+.. ...-...++.+|.... ++
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 67899999999999888887764568999999999999999999321 1112467788887642 22
Q ss_pred -CCCCCEEEEccchhhh--CHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 134 -AKKYDRIISCEMMEAV--GHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 134 -~~~fD~I~~~~~l~~~--~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
...||+|-|.+++|+. +.+....+++++...|+|||+|+.+++.
T Consensus 142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d 188 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPD 188 (331)
T ss_dssp TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecC
Confidence 2599999999999998 6677888999999999999999996654
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.42 E-value=6.1e-13 Score=110.67 Aligned_cols=109 Identities=17% Similarity=0.283 Sum_probs=92.1
Q ss_pred EEEEECCcccHHHHHHHHc-cC--CEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCC----C-CCCCCCEEEEc
Q 048309 72 EVLEIGCGWGTFAIEVVRQ-TG--CNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQL----P-KAKKYDRIISC 143 (288)
Q Consensus 72 ~vLDiGcG~G~~~~~la~~-~~--~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~----~-~~~~fD~I~~~ 143 (288)
+|||||||.|.....+.+. +. -.|.++|.||.+++..+++..... .++...+.|+... + ..+++|.|++.
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e--~~~~afv~Dlt~~~~~~~~~~~svD~it~I 151 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE--SRVEAFVWDLTSPSLKEPPEEGSVDIITLI 151 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch--hhhcccceeccchhccCCCCcCccceEEEE
Confidence 8999999999999999886 33 689999999999999988765443 4566666666542 2 56899999999
Q ss_pred cchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCCCcc
Q 048309 144 EMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPDAR 182 (288)
Q Consensus 144 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~ 182 (288)
+++..++++.....+++++++|||||.+++.+.+..+..
T Consensus 152 FvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~Dla 190 (264)
T KOG2361|consen 152 FVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLA 190 (264)
T ss_pred EEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHH
Confidence 999999999999999999999999999999998876644
|
|
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.1e-12 Score=115.66 Aligned_cols=116 Identities=16% Similarity=0.249 Sum_probs=88.7
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC--
Q 048309 56 RKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-- 132 (288)
Q Consensus 56 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-- 132 (288)
..+..+++.+. ++.+|||+|||+|.++..+++. ++++|+|+|+|+.+++.|+++++..+. +++++++|+.+..
T Consensus 240 ~LVe~aL~~l~--~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~--rV~fi~gDl~e~~l~ 315 (423)
T PRK14966 240 HLVEAVLARLP--ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGA--RVEFAHGSWFDTDMP 315 (423)
T ss_pred HHHHHhhhccC--CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--cEEEEEcchhccccc
Confidence 33444555443 5569999999999999999876 678999999999999999999988775 7999999996643
Q ss_pred CCCCCCEEEEccchhh-----h------------------CHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 133 KAKKYDRIISCEMMEA-----V------------------GHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 133 ~~~~fD~I~~~~~l~~-----~------------------~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
..++||+|+|+...-. . +.+.+..+++.+.+.|+|||.+++..
T Consensus 316 ~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEi 381 (423)
T PRK14966 316 SEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEH 381 (423)
T ss_pred cCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 3468999999764310 0 00224567888889999999988743
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.9e-12 Score=113.65 Aligned_cols=110 Identities=25% Similarity=0.330 Sum_probs=82.9
Q ss_pred HHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCC
Q 048309 59 SLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYD 138 (288)
Q Consensus 59 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD 138 (288)
-.+++.+ ..++.+|||+|||+|.+++..++....+|+|+|++|.+++.|+++++.+++..++.+. ...+. ..++||
T Consensus 152 l~~l~~~-~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~~~~~-~~~~~d 227 (295)
T PF06325_consen 152 LELLEKY-VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVS--LSEDL-VEGKFD 227 (295)
T ss_dssp HHHHHHH-SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--CTSCT-CCS-EE
T ss_pred HHHHHHh-ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--Eeccc-ccccCC
Confidence 3344444 3467899999999999999988864458999999999999999999999997766553 22222 348999
Q ss_pred EEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 139 RIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 139 ~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
+|+++-... -+..++..+.+.|+|||.++++-+-
T Consensus 228 lvvANI~~~-----vL~~l~~~~~~~l~~~G~lIlSGIl 261 (295)
T PF06325_consen 228 LVVANILAD-----VLLELAPDIASLLKPGGYLILSGIL 261 (295)
T ss_dssp EEEEES-HH-----HHHHHHHHCHHHEEEEEEEEEEEEE
T ss_pred EEEECCCHH-----HHHHHHHHHHHhhCCCCEEEEcccc
Confidence 999975433 3467888899999999999997654
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.2e-12 Score=118.78 Aligned_cols=118 Identities=16% Similarity=0.206 Sum_probs=95.4
Q ss_pred HHHHcCCCCCCEEEEECCcccHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC--CCCC
Q 048309 61 LIEKARVSKEHEVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP--KAKK 136 (288)
Q Consensus 61 l~~~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~--~~~~ 136 (288)
+...+++.++.+|||+|||+|..+..++.. .+.+|+++|+++.+++.++++++..|+. +++++++|+..++ ..++
T Consensus 229 ~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~-~v~~~~~Da~~l~~~~~~~ 307 (431)
T PRK14903 229 VPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLS-SIEIKIADAERLTEYVQDT 307 (431)
T ss_pred HHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhhhhhhhhcc
Confidence 334567788999999999999999999886 3569999999999999999999999984 6999999998875 4578
Q ss_pred CCEEEEccchhhh-------------CHh-------hHHHHHHHHhcccccCcEEEEEeecCC
Q 048309 137 YDRIISCEMMEAV-------------GHE-------YMEEYFGCCESLLAKDGLLVLQFSSTP 179 (288)
Q Consensus 137 fD~I~~~~~l~~~-------------~~~-------~~~~~l~~~~~~LkpgG~l~~~~~~~~ 179 (288)
||.|++...+... +++ ...+++.++.+.|||||.++.++++..
T Consensus 308 fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~ 370 (431)
T PRK14903 308 FDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVT 370 (431)
T ss_pred CCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 9999985433211 111 235679999999999999999888744
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=99.40 E-value=5.2e-12 Score=110.22 Aligned_cols=116 Identities=16% Similarity=0.152 Sum_probs=92.6
Q ss_pred HHcCCCCCCEEEEECCcccHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CCCCCCE
Q 048309 63 EKARVSKEHEVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAKKYDR 139 (288)
Q Consensus 63 ~~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~~fD~ 139 (288)
..+.++++.+|||+|||+|..+..+++. ....|+++|+++.+++.++++++..|+ .+++++..|...++ ..++||+
T Consensus 65 ~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~-~~v~~~~~D~~~~~~~~~~fD~ 143 (264)
T TIGR00446 65 LALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGV-LNVAVTNFDGRVFGAAVPKFDA 143 (264)
T ss_pred HHhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC-CcEEEecCCHHHhhhhccCCCE
Confidence 4456778999999999999999999876 235899999999999999999999998 47999999988766 4467999
Q ss_pred EEEccchhhh-------------CHh-------hHHHHHHHHhcccccCcEEEEEeecCC
Q 048309 140 IISCEMMEAV-------------GHE-------YMEEYFGCCESLLAKDGLLVLQFSSTP 179 (288)
Q Consensus 140 I~~~~~l~~~-------------~~~-------~~~~~l~~~~~~LkpgG~l~~~~~~~~ 179 (288)
|++....... .++ ...++++.+.++|||||+++.++.+..
T Consensus 144 Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~ 203 (264)
T TIGR00446 144 ILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLE 203 (264)
T ss_pred EEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 9975432211 111 234589999999999999998876643
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.9e-12 Score=107.83 Aligned_cols=96 Identities=17% Similarity=0.255 Sum_probs=77.0
Q ss_pred HHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCC-CC--CCCC
Q 048309 60 LLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQ-LP--KAKK 136 (288)
Q Consensus 60 ~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~-~~--~~~~ 136 (288)
.+.+.+ +++.+|||+|||+|.++..+++..+..++|+|+++++++.+++. +++++++|+.+ ++ .+++
T Consensus 6 ~i~~~i--~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~--------~~~~~~~d~~~~l~~~~~~s 75 (194)
T TIGR02081 6 SILNLI--PPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR--------GVNVIQGDLDEGLEAFPDKS 75 (194)
T ss_pred HHHHhc--CCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc--------CCeEEEEEhhhcccccCCCC
Confidence 344444 36779999999999999988876567899999999999887642 46888899876 32 4678
Q ss_pred CCEEEEccchhhhCHhhHHHHHHHHhccccc
Q 048309 137 YDRIISCEMMEAVGHEYMEEYFGCCESLLAK 167 (288)
Q Consensus 137 fD~I~~~~~l~~~~~~~~~~~l~~~~~~Lkp 167 (288)
||+|++..+++|+ .++..+++++.+.+++
T Consensus 76 fD~Vi~~~~l~~~--~d~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 76 FDYVILSQTLQAT--RNPEEILDEMLRVGRH 104 (194)
T ss_pred cCEEEEhhHhHcC--cCHHHHHHHHHHhCCe
Confidence 9999999999999 7788899988776553
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=99.40 E-value=6.8e-12 Score=102.23 Aligned_cols=110 Identities=16% Similarity=0.203 Sum_probs=85.9
Q ss_pred HHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CCCCC
Q 048309 59 SLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAKKY 137 (288)
Q Consensus 59 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~~f 137 (288)
+.+++.+...++.+|||+|||+|.++..++++ +.+++++|+++.+++.+++++... ++++++.+|+.+++ .+.+|
T Consensus 3 ~~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~-~~~v~~vE~~~~~~~~~~~~~~~~---~~v~ii~~D~~~~~~~~~~~ 78 (169)
T smart00650 3 DKIVRAANLRPGDTVLEIGPGKGALTEELLER-AARVTAIEIDPRLAPRLREKFAAA---DNLTVIHGDALKFDLPKLQP 78 (169)
T ss_pred HHHHHhcCCCCcCEEEEECCCccHHHHHHHhc-CCeEEEEECCHHHHHHHHHHhccC---CCEEEEECchhcCCccccCC
Confidence 46778888888899999999999999999987 779999999999999999887542 47999999999987 44579
Q ss_pred CEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 138 DRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 138 D~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
|.|+++..++ +..+....+++.. .+.++|.++++.
T Consensus 79 d~vi~n~Py~-~~~~~i~~~l~~~--~~~~~~~l~~q~ 113 (169)
T smart00650 79 YKVVGNLPYN-ISTPILFKLLEEP--PAFRDAVLMVQK 113 (169)
T ss_pred CEEEECCCcc-cHHHHHHHHHhcC--CCcceEEEEEEH
Confidence 9999876654 3323344444332 245788888743
|
|
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.1e-11 Score=108.00 Aligned_cols=105 Identities=13% Similarity=0.061 Sum_probs=81.3
Q ss_pred HHcCCCCCCEEEEECCcccHHHHHHHHcc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCC---C-CCCC
Q 048309 63 EKARVSKEHEVLEIGCGWGTFAIEVVRQT--GCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQL---P-KAKK 136 (288)
Q Consensus 63 ~~~~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~---~-~~~~ 136 (288)
+.+.++++.+|||+|||+|.++..++... ...|+++|+++.+.+...+.++.. .|+.++.+|+... . ...+
T Consensus 126 ~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r---~NI~~I~~Da~~p~~y~~~~~~ 202 (293)
T PTZ00146 126 ANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR---PNIVPIIEDARYPQKYRMLVPM 202 (293)
T ss_pred ceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCCEEEECCccChhhhhcccCC
Confidence 44567899999999999999999999873 458999999998765555544332 4789999998642 1 3468
Q ss_pred CCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 137 YDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 137 fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
+|+|++... . +.+...++.++.++|||||.|++.
T Consensus 203 vDvV~~Dva--~--pdq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 203 VDVIFADVA--Q--PDQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred CCEEEEeCC--C--cchHHHHHHHHHHhccCCCEEEEE
Confidence 999999764 1 245566777899999999999993
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.39 E-value=6e-12 Score=119.14 Aligned_cols=107 Identities=20% Similarity=0.276 Sum_probs=86.1
Q ss_pred CCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCEEEEccchh
Q 048309 69 KEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMME 147 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~~~~~l~ 147 (288)
++.+|||+|||+|.++..++.. ++.+|+++|+|+.+++.|++++...++.++++++.+|+.+....++||+|+|+...-
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsNPPYi 217 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSNPPYI 217 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEECCCCC
Confidence 3468999999999999999876 678999999999999999999998888778999999986533456899999964221
Q ss_pred --------------hh----------CHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 148 --------------AV----------GHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 148 --------------~~----------~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
|- +.+.+..+++.+.++|+|||.+++..
T Consensus 218 ~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEi 269 (506)
T PRK01544 218 SHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEI 269 (506)
T ss_pred CchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 10 01234567888999999999999853
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.3e-11 Score=106.38 Aligned_cols=113 Identities=22% Similarity=0.269 Sum_probs=94.6
Q ss_pred HHHHHHcCCCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCC
Q 048309 59 SLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKY 137 (288)
Q Consensus 59 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~f 137 (288)
..++......+..+|+|||+|.|.++..+++. ++.+++.+|+ |+.++.+++ .++++++.+|+. -+.+. +
T Consensus 90 ~~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~-------~~rv~~~~gd~f-~~~P~-~ 159 (241)
T PF00891_consen 90 DILLEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE-------ADRVEFVPGDFF-DPLPV-A 159 (241)
T ss_dssp HHHHHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH-------TTTEEEEES-TT-TCCSS-E
T ss_pred hhhhccccccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc-------ccccccccccHH-hhhcc-c
Confidence 44556667777789999999999999999988 9999999998 889988887 268999999998 33334 9
Q ss_pred CEEEEccchhhhCHhhHHHHHHHHhcccccC--cEEEEEeecCCCc
Q 048309 138 DRIISCEMMEAVGHEYMEEYFGCCESLLAKD--GLLVLQFSSTPDA 181 (288)
Q Consensus 138 D~I~~~~~l~~~~~~~~~~~l~~~~~~Lkpg--G~l~~~~~~~~~~ 181 (288)
|+++...++|+.++++-..+++++++.|+|| |+++|.+...++.
T Consensus 160 D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~~ 205 (241)
T PF00891_consen 160 DVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLPDD 205 (241)
T ss_dssp SEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEECSS
T ss_pred cceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccCCC
Confidence 9999999999999999999999999999999 9999988876554
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=7.6e-12 Score=117.10 Aligned_cols=118 Identities=19% Similarity=0.230 Sum_probs=93.9
Q ss_pred HHHHHcCCCCCCEEEEECCcccHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC--CCC
Q 048309 60 LLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP--KAK 135 (288)
Q Consensus 60 ~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~--~~~ 135 (288)
.+...+.+.++.+|||+|||+|..+..+++. ...+|+++|+++.+++.++++++..|+. +++++++|+.++. ..+
T Consensus 241 lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~-~v~~~~~D~~~~~~~~~~ 319 (444)
T PRK14902 241 LVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLT-NIETKALDARKVHEKFAE 319 (444)
T ss_pred HHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCCcccccchhcc
Confidence 3445667778899999999999999999886 3579999999999999999999999985 6999999998764 237
Q ss_pred CCCEEEEccchhhh-------------CHhh-------HHHHHHHHhcccccCcEEEEEeecC
Q 048309 136 KYDRIISCEMMEAV-------------GHEY-------MEEYFGCCESLLAKDGLLVLQFSST 178 (288)
Q Consensus 136 ~fD~I~~~~~l~~~-------------~~~~-------~~~~l~~~~~~LkpgG~l~~~~~~~ 178 (288)
+||+|++....... ++.+ ...+++.+.++|||||.++.++.+.
T Consensus 320 ~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 382 (444)
T PRK14902 320 KFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTI 382 (444)
T ss_pred cCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCC
Confidence 89999986432211 0111 2468999999999999999876553
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=99.38 E-value=5.3e-12 Score=92.61 Aligned_cols=101 Identities=27% Similarity=0.471 Sum_probs=85.4
Q ss_pred EEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC--CCCCCCEEEEccchhhh
Q 048309 72 EVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP--KAKKYDRIISCEMMEAV 149 (288)
Q Consensus 72 ~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~--~~~~fD~I~~~~~l~~~ 149 (288)
+++|+|||+|..+..+++....+++++|+++.++..+++.....+. .+++++..|+.+.. ..+++|+|++..+++++
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~ 79 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLA-DNVEVLKGDAEELPPEADESFDVIISDPPLHHL 79 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccc-cceEEEEcChhhhccccCCceEEEEEccceeeh
Confidence 4899999999999999875567999999999999998864443333 57999999998876 46789999999999883
Q ss_pred CHhhHHHHHHHHhcccccCcEEEEE
Q 048309 150 GHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 150 ~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
......+++.+.+.|+|||.+++.
T Consensus 80 -~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 80 -VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred -hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 278899999999999999999875
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=99.37 E-value=8.6e-12 Score=116.11 Aligned_cols=122 Identities=15% Similarity=0.151 Sum_probs=94.1
Q ss_pred HHHHHHcCCCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC---CC
Q 048309 59 SLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP---KA 134 (288)
Q Consensus 59 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~---~~ 134 (288)
..++..+++.++.+|||+|||+|..+..+++. +..+|+++|+++.+++.++++++..|+..++.+..+|....+ ..
T Consensus 228 ~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~ 307 (426)
T TIGR00563 228 QWVATWLAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAEN 307 (426)
T ss_pred HHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccc
Confidence 44556677888999999999999999999886 447999999999999999999999988533444667765543 35
Q ss_pred CCCCEEEEcc------chhhhCH-------h-------hHHHHHHHHhcccccCcEEEEEeecCCC
Q 048309 135 KKYDRIISCE------MMEAVGH-------E-------YMEEYFGCCESLLAKDGLLVLQFSSTPD 180 (288)
Q Consensus 135 ~~fD~I~~~~------~l~~~~~-------~-------~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 180 (288)
++||.|++.. ++.+.+. + ...+++.++.++|||||.++.++++...
T Consensus 308 ~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~ 373 (426)
T TIGR00563 308 EQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLP 373 (426)
T ss_pred cccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCCh
Confidence 7899999742 3333211 1 1367899999999999999998877543
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=5.1e-12 Score=111.26 Aligned_cols=107 Identities=21% Similarity=0.307 Sum_probs=84.7
Q ss_pred CCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcC--C--CCceEEEEcccCCCC--CCCCCCEE
Q 048309 68 SKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAG--L--QDHIRLYLCDYRQLP--KAKKYDRI 140 (288)
Q Consensus 68 ~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g--~--~~~v~~~~~d~~~~~--~~~~fD~I 140 (288)
+.+.+||+||||+|..+..++++ ...+|++||+++.+++.|++.+...+ . .++++++.+|+..+. ..++||+|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 35679999999999999999887 44689999999999999999886431 1 358999999998754 46789999
Q ss_pred EEccchhhhCHh--hHHHHHHHHhcccccCcEEEEE
Q 048309 141 ISCEMMEAVGHE--YMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 141 ~~~~~l~~~~~~--~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
++..+-...+.. ...++++.+.+.|+|||++++.
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 155 IVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred EECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 997543322111 1367899999999999999874
|
|
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.3e-12 Score=104.10 Aligned_cols=84 Identities=14% Similarity=0.084 Sum_probs=72.7
Q ss_pred EEEcCCHHHHHHHHHHHHHc--CCCCceEEEEcccCCCC-CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEE
Q 048309 96 TGITLSAEQMKYAEMKVNEA--GLQDHIRLYLCDYRQLP-KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLV 172 (288)
Q Consensus 96 ~giD~s~~~~~~a~~~~~~~--g~~~~v~~~~~d~~~~~-~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~ 172 (288)
+|+|+|++|++.|+++.+.. +...+++++++|+.+++ .+++||+|++..+++++ +++.+++++++++|||||.++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~--~d~~~~l~ei~rvLkpGG~l~ 78 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNV--VDRLRAMKEMYRVLKPGSRVS 78 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcC--CCHHHHHHHHHHHcCcCeEEE
Confidence 58999999999998776532 22247999999999998 67899999999999999 788999999999999999999
Q ss_pred EEeecCCCc
Q 048309 173 LQFSSTPDA 181 (288)
Q Consensus 173 ~~~~~~~~~ 181 (288)
+.++..+..
T Consensus 79 i~d~~~~~~ 87 (160)
T PLN02232 79 ILDFNKSNQ 87 (160)
T ss_pred EEECCCCCh
Confidence 998886654
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=99.37 E-value=6.4e-12 Score=104.17 Aligned_cols=106 Identities=16% Similarity=0.242 Sum_probs=78.0
Q ss_pred HHHHHHHc-CCCCCCEEEEECCcccHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC--
Q 048309 58 HSLLIEKA-RVSKEHEVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-- 132 (288)
Q Consensus 58 ~~~l~~~~-~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-- 132 (288)
+..+.+.. .+.++.+|||+|||+|.++..+++. ...+|+++|+++.+ .. .+++++++|+.+..
T Consensus 20 ~~~~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~-~~i~~~~~d~~~~~~~ 87 (188)
T TIGR00438 20 LLQLNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PI-ENVDFIRGDFTDEEVL 87 (188)
T ss_pred HHHHHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cC-CCceEEEeeCCChhHH
Confidence 33444433 4578899999999999999988876 34589999999854 12 36788999987632
Q ss_pred -------CCCCCCEEEEccc--------hhhh-CHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 133 -------KAKKYDRIISCEM--------MEAV-GHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 133 -------~~~~fD~I~~~~~--------l~~~-~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
+.++||+|++..+ +.|. ..+....++..+.++|+|||++++..
T Consensus 88 ~~l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~ 146 (188)
T TIGR00438 88 NKIRERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKV 146 (188)
T ss_pred HHHHHHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 3468999998643 2222 11235789999999999999999864
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=9.1e-12 Score=116.17 Aligned_cols=117 Identities=18% Similarity=0.182 Sum_probs=94.1
Q ss_pred HHHHcCCCCCCEEEEECCcccHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-----C
Q 048309 61 LIEKARVSKEHEVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-----K 133 (288)
Q Consensus 61 l~~~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-----~ 133 (288)
+...+.+.++.+|||+|||+|..+..+++. ...+|+++|+++.+++.++++++..|+. +++++++|+.+++ .
T Consensus 244 ~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~-~v~~~~~D~~~~~~~~~~~ 322 (434)
T PRK14901 244 VAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLK-SIKILAADSRNLLELKPQW 322 (434)
T ss_pred HHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCC-eEEEEeCChhhcccccccc
Confidence 445567788999999999999999999886 2358999999999999999999999984 7999999998764 2
Q ss_pred CCCCCEEEEcc------chhhhC-------Hhh-------HHHHHHHHhcccccCcEEEEEeecC
Q 048309 134 AKKYDRIISCE------MMEAVG-------HEY-------MEEYFGCCESLLAKDGLLVLQFSST 178 (288)
Q Consensus 134 ~~~fD~I~~~~------~l~~~~-------~~~-------~~~~l~~~~~~LkpgG~l~~~~~~~ 178 (288)
.++||.|++.. ++.+-+ +++ ..+++.++.++|||||+++.++++.
T Consensus 323 ~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi 387 (434)
T PRK14901 323 RGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTL 387 (434)
T ss_pred cccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 46899999753 332221 111 4678999999999999999887664
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.3e-11 Score=104.07 Aligned_cols=108 Identities=21% Similarity=0.274 Sum_probs=97.6
Q ss_pred HHHHHHcCCCCCCEEEEECCcccHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCC
Q 048309 59 SLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKK 136 (288)
Q Consensus 59 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~ 136 (288)
..++..+++.+|.+|+|.|.|+|.++..|+.. +..+|+.+|+.++..+.|+++++..++.+++++..+|+.+......
T Consensus 84 ~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~~ 163 (256)
T COG2519 84 GYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEED 163 (256)
T ss_pred HHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccccccc
Confidence 56788899999999999999999999999975 5579999999999999999999999997779999999999875569
Q ss_pred CCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEE
Q 048309 137 YDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVL 173 (288)
Q Consensus 137 fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~ 173 (288)
||+|+.. + +++-.+++++.+.|+|||.+++
T Consensus 164 vDav~LD-----m--p~PW~~le~~~~~Lkpgg~~~~ 193 (256)
T COG2519 164 VDAVFLD-----L--PDPWNVLEHVSDALKPGGVVVV 193 (256)
T ss_pred cCEEEEc-----C--CChHHHHHHHHHHhCCCcEEEE
Confidence 9999984 3 6778999999999999999987
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.8e-13 Score=112.85 Aligned_cols=117 Identities=24% Similarity=0.410 Sum_probs=93.5
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC---
Q 048309 56 RKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP--- 132 (288)
Q Consensus 56 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~--- 132 (288)
.++..++..++..+=.++||+|||||..+..+... ..+++|+|+|+.|++.|.++ |+. -+..++|...+.
T Consensus 112 ~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~-a~~ltGvDiS~nMl~kA~eK----g~Y--D~L~~Aea~~Fl~~~ 184 (287)
T COG4976 112 ELLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDM-ADRLTGVDISENMLAKAHEK----GLY--DTLYVAEAVLFLEDL 184 (287)
T ss_pred HHHHHHHHhccCCccceeeecccCcCcccHhHHHH-HhhccCCchhHHHHHHHHhc----cch--HHHHHHHHHHHhhhc
Confidence 45566777777666689999999999999988765 56899999999999998765 332 244555554332
Q ss_pred CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCCCc
Q 048309 133 KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPDA 181 (288)
Q Consensus 133 ~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 181 (288)
.+..||+|++..++.++ .+++.++.-+...|+|||.|.++.-..+..
T Consensus 185 ~~er~DLi~AaDVl~Yl--G~Le~~~~~aa~~L~~gGlfaFSvE~l~~~ 231 (287)
T COG4976 185 TQERFDLIVAADVLPYL--GALEGLFAGAAGLLAPGGLFAFSVETLPDD 231 (287)
T ss_pred cCCcccchhhhhHHHhh--cchhhHHHHHHHhcCCCceEEEEecccCCC
Confidence 46799999999999999 789999999999999999999977665553
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.9e-11 Score=101.26 Aligned_cols=120 Identities=23% Similarity=0.229 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc-c-CCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEE-ccc
Q 048309 52 VAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-T-GCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYL-CDY 128 (288)
Q Consensus 52 ~a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~-~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~-~d~ 128 (288)
.++...+..+++.. ++++|||||++.|..+..+|.. + ..++|+||.++++.+.|++++++.|+.++++.+. +|.
T Consensus 45 ~e~g~~L~~L~~~~---~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gda 121 (219)
T COG4122 45 PETGALLRLLARLS---GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDA 121 (219)
T ss_pred hhHHHHHHHHHHhc---CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcH
Confidence 56666666666654 6789999999999999999988 4 5789999999999999999999999988899999 577
Q ss_pred CCCC---CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCC
Q 048309 129 RQLP---KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTP 179 (288)
Q Consensus 129 ~~~~---~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 179 (288)
.+.- ..++||+|+... .+.++..+++.+.++|+|||++++.....+
T Consensus 122 l~~l~~~~~~~fDliFIDa-----dK~~yp~~le~~~~lLr~GGliv~DNvl~~ 170 (219)
T COG4122 122 LDVLSRLLDGSFDLVFIDA-----DKADYPEYLERALPLLRPGGLIVADNVLFG 170 (219)
T ss_pred HHHHHhccCCCccEEEEeC-----ChhhCHHHHHHHHHHhCCCcEEEEeecccC
Confidence 6643 358999999853 336778999999999999999998765443
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=8.7e-12 Score=107.48 Aligned_cols=101 Identities=13% Similarity=0.189 Sum_probs=82.4
Q ss_pred CCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCEEEEccch
Q 048309 68 SKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMM 146 (288)
Q Consensus 68 ~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~~~~~l 146 (288)
..+.+|||+|||+|.++..++.+ .+.+|+|+|+++.+++.++++. ++++++++|+.++...++||+|+++..+
T Consensus 63 ~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~------~~v~~v~~D~~e~~~~~kFDlIIsNPPF 136 (279)
T PHA03411 63 HCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL------PEAEWITSDVFEFESNEKFDVVISNPPF 136 (279)
T ss_pred ccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC------cCCEEEECchhhhcccCCCcEEEEcCCc
Confidence 34569999999999999988776 4579999999999999998763 3689999999987755789999999988
Q ss_pred hhhCHhh------------------HHHHHHHHhcccccCcEEEEE
Q 048309 147 EAVGHEY------------------MEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 147 ~~~~~~~------------------~~~~l~~~~~~LkpgG~l~~~ 174 (288)
.+.+..+ ..++++....+|+|+|.+++.
T Consensus 137 ~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ 182 (279)
T PHA03411 137 GKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA 182 (279)
T ss_pred cccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence 8763321 246777888899999977765
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.9e-11 Score=104.32 Aligned_cols=121 Identities=13% Similarity=0.152 Sum_probs=99.2
Q ss_pred CHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEc
Q 048309 49 DLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLC 126 (288)
Q Consensus 49 ~l~~a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~ 126 (288)
.+...+.+.+..+++.. ++++||||||++|..+..++.. .+.+++++|.+++..+.|+++++..|+.++++++.+
T Consensus 101 ~v~~~~g~lL~~L~~~~---~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~G 177 (278)
T PLN02476 101 QVSPDQAQLLAMLVQIL---GAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHG 177 (278)
T ss_pred ccCHHHHHHHHHHHHhc---CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEc
Confidence 34556666666666654 4679999999999999999885 356899999999999999999999999889999999
Q ss_pred ccCCCC-------CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 127 DYRQLP-------KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 127 d~~~~~-------~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
|+.+.- ..++||+|+.... +.++..+++.+.++|+|||.+++....
T Consensus 178 dA~e~L~~l~~~~~~~~FD~VFIDa~-----K~~Y~~y~e~~l~lL~~GGvIV~DNvL 230 (278)
T PLN02476 178 LAAESLKSMIQNGEGSSYDFAFVDAD-----KRMYQDYFELLLQLVRVGGVIVMDNVL 230 (278)
T ss_pred CHHHHHHHHHhcccCCCCCEEEECCC-----HHHHHHHHHHHHHhcCCCcEEEEecCc
Confidence 997632 1368999998743 367889999999999999999986543
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.3e-11 Score=103.28 Aligned_cols=121 Identities=21% Similarity=0.255 Sum_probs=99.6
Q ss_pred CHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEc
Q 048309 49 DLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLC 126 (288)
Q Consensus 49 ~l~~a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~ 126 (288)
.+...+.+.+..+++..+ .++||||||++|..+..+++. .+++|+.+|.+++..+.|++.++..|+.++++++.+
T Consensus 28 ~i~~~~g~lL~~l~~~~~---~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~g 104 (205)
T PF01596_consen 28 SISPETGQLLQMLVRLTR---PKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEG 104 (205)
T ss_dssp SHHHHHHHHHHHHHHHHT----SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES
T ss_pred ccCHHHHHHHHHHHHhcC---CceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEe
Confidence 456667777777777654 569999999999999999986 367999999999999999999999999889999999
Q ss_pred ccCCCC-------CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 127 DYRQLP-------KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 127 d~~~~~-------~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
|+.+.- ..++||+|+.... +.++..+++.+.++|+|||++++....
T Consensus 105 da~~~l~~l~~~~~~~~fD~VFiDa~-----K~~y~~y~~~~~~ll~~ggvii~DN~l 157 (205)
T PF01596_consen 105 DALEVLPELANDGEEGQFDFVFIDAD-----KRNYLEYFEKALPLLRPGGVIIADNVL 157 (205)
T ss_dssp -HHHHHHHHHHTTTTTSEEEEEEEST-----GGGHHHHHHHHHHHEEEEEEEEEETTT
T ss_pred ccHhhHHHHHhccCCCceeEEEEccc-----ccchhhHHHHHhhhccCCeEEEEcccc
Confidence 997632 1358999998753 356788999999999999999986543
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.7e-11 Score=104.82 Aligned_cols=115 Identities=15% Similarity=0.160 Sum_probs=85.9
Q ss_pred HHHHHHHHcCC-CCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC--
Q 048309 57 KHSLLIEKARV-SKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-- 132 (288)
Q Consensus 57 ~~~~l~~~~~~-~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-- 132 (288)
.++.++..+.. .++.+|||+|||+|.++..+++. ++.+|+++|+|+.+++.|+++++.++ ++++++|+.+..
T Consensus 73 Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~----~~~~~~D~~~~l~~ 148 (251)
T TIGR03704 73 LVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG----GTVHEGDLYDALPT 148 (251)
T ss_pred HHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC----CEEEEeechhhcch
Confidence 33444444432 23458999999999999999876 56799999999999999999998765 478999987643
Q ss_pred -CCCCCCEEEEccchh------hhCH------------------hhHHHHHHHHhcccccCcEEEEEe
Q 048309 133 -KAKKYDRIISCEMME------AVGH------------------EYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 133 -~~~~fD~I~~~~~l~------~~~~------------------~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
..++||+|+++.... .+++ +....+++.+.++|+|||.+++..
T Consensus 149 ~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~ 216 (251)
T TIGR03704 149 ALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVET 216 (251)
T ss_pred hcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 236799999986432 1111 124578888899999999999864
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.2e-12 Score=110.43 Aligned_cols=141 Identities=14% Similarity=0.177 Sum_probs=101.3
Q ss_pred HHHHhhhhhcCCCCCCCHHHHHHH----------HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCH
Q 048309 33 QAHRNISYHYDLDEDEDLKVAQMR----------KHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSA 102 (288)
Q Consensus 33 ~~~~~~a~~Yd~~~~~~l~~a~~~----------~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~ 102 (288)
+.-..+++||+.-.....+..+.. ++...|=..-.+++..++|+|||-|+.++.+-+..-..++|+|++.
T Consensus 71 ~~~~~Va~HYN~~~e~g~e~Rq~S~Ii~lRnfNNwIKs~LI~~y~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAe 150 (389)
T KOG1975|consen 71 SKSSEVAEHYNERTEVGREKRQRSPIIFLRNFNNWIKSVLINLYTKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAE 150 (389)
T ss_pred chhHHHHHHHHHHHHHhHhhhccCceeehhhhhHHHHHHHHHHHhccccccceeccCCcccHhHhhhhcccceEeeehhh
Confidence 336678888886533233322222 2233232233467889999999999988888766446899999999
Q ss_pred HHHHHHHHHHHHcCCCC-----ceEEEEcccCC------CC-CCCCCCEEEEccchhhh--CHhhHHHHHHHHhcccccC
Q 048309 103 EQMKYAEMKVNEAGLQD-----HIRLYLCDYRQ------LP-KAKKYDRIISCEMMEAV--GHEYMEEYFGCCESLLAKD 168 (288)
Q Consensus 103 ~~~~~a~~~~~~~g~~~-----~v~~~~~d~~~------~~-~~~~fD~I~~~~~l~~~--~~~~~~~~l~~~~~~Lkpg 168 (288)
..++.|+++.+...-.. .+.++.+|... ++ .+.+||+|-|.+++|+. +.+...-+++++...|+||
T Consensus 151 vSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpG 230 (389)
T KOG1975|consen 151 VSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPG 230 (389)
T ss_pred ccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCC
Confidence 99999999987542211 26888888754 22 23349999999999876 5567788999999999999
Q ss_pred cEEEE
Q 048309 169 GLLVL 173 (288)
Q Consensus 169 G~l~~ 173 (288)
|+++-
T Consensus 231 G~FIg 235 (389)
T KOG1975|consen 231 GVFIG 235 (389)
T ss_pred cEEEE
Confidence 99996
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=2e-11 Score=111.92 Aligned_cols=108 Identities=18% Similarity=0.136 Sum_probs=86.5
Q ss_pred CCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCC-CceEEEEcccCCCC-----CCCCCCEEEE
Q 048309 69 KEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQ-DHIRLYLCDYRQLP-----KAKKYDRIIS 142 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~-~~v~~~~~d~~~~~-----~~~~fD~I~~ 142 (288)
++.+|||+|||+|.++..++.....+|+++|+|+.+++.++++++.+++. .+++++++|+.++. ..++||+|++
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVil 299 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVM 299 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEE
Confidence 57899999999999988776653458999999999999999999999985 47999999998753 2468999999
Q ss_pred ccchhhhCH-------hhHHHHHHHHhcccccCcEEEEEee
Q 048309 143 CEMMEAVGH-------EYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 143 ~~~l~~~~~-------~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
......-+. ..+..++..+.++|+|||.++..+.
T Consensus 300 DPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~sc 340 (396)
T PRK15128 300 DPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSC 340 (396)
T ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 865321111 2456677788999999999997553
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.9e-11 Score=120.16 Aligned_cols=108 Identities=18% Similarity=0.138 Sum_probs=88.1
Q ss_pred CCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCC-CceEEEEcccCCCC--CCCCCCEEEEccc
Q 048309 69 KEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQ-DHIRLYLCDYRQLP--KAKKYDRIISCEM 145 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~-~~v~~~~~d~~~~~--~~~~fD~I~~~~~ 145 (288)
++.+|||+|||+|.++..++.....+|+++|+|+.+++.|+++++.+++. .+++++++|+.++. ..++||+|++...
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP 617 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPP 617 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECCC
Confidence 57899999999999999999863347999999999999999999999985 57999999987643 3568999999753
Q ss_pred hh-------hh--CHhhHHHHHHHHhcccccCcEEEEEee
Q 048309 146 ME-------AV--GHEYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 146 l~-------~~--~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
.. .. ...+...++..+.++|+|||.+++.+.
T Consensus 618 ~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~ 657 (702)
T PRK11783 618 TFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNN 657 (702)
T ss_pred CCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 21 00 114567889999999999999988654
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.32 E-value=4e-11 Score=105.18 Aligned_cols=103 Identities=22% Similarity=0.424 Sum_probs=83.4
Q ss_pred EEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCEEEEccch---h
Q 048309 72 EVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMM---E 147 (288)
Q Consensus 72 ~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~~~~~l---~ 147 (288)
+|||+|||+|..++.++.. +.++|+|+|+|+.+++.|+++++.+++ .++.++.+|+.+-.. ++||+|+|+... .
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l-~~~~~~~~dlf~~~~-~~fDlIVsNPPYip~~ 190 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL-VRVLVVQSDLFEPLR-GKFDLIVSNPPYIPAE 190 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC-ccEEEEeeecccccC-CceeEEEeCCCCCCCc
Confidence 8999999999999999998 557999999999999999999999998 577777777665433 499999998532 0
Q ss_pred --hh------------------CHhhHHHHHHHHhcccccCcEEEEEee
Q 048309 148 --AV------------------GHEYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 148 --~~------------------~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
+. +.+....++.++.+.|+|||.+++...
T Consensus 191 ~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g 239 (280)
T COG2890 191 DPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIG 239 (280)
T ss_pred ccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEEC
Confidence 11 113456788899999999999998654
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.30 E-value=5.6e-11 Score=102.02 Aligned_cols=154 Identities=11% Similarity=0.080 Sum_probs=111.6
Q ss_pred hhhhHHHHHhhhhhcCChHHHHHhhhhhcCCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc--c
Q 048309 14 KVNQKSYFLRHISRKNSLAQAHRNISYHYDLDEDEDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ--T 91 (288)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~Yd~~~~~~l~~a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~--~ 91 (288)
.++.++.-..+..+.++.-......+...... .......+.+.+..+++..+ .++|||||+++|..+..++.. .
T Consensus 28 ~i~~Y~~~~~~~~~~~~~L~~l~~~a~~~~~~-~~~~~~~~g~lL~~l~~~~~---ak~iLEiGT~~GySal~la~al~~ 103 (247)
T PLN02589 28 ALYQYILETSVYPREPESMKELRELTAKHPWN-IMTTSADEGQFLNMLLKLIN---AKNTMEIGVYTGYSLLATALALPE 103 (247)
T ss_pred HHHHHHHHhccCCCCCHHHHHHHHHHHhcCCC-CCccCHHHHHHHHHHHHHhC---CCEEEEEeChhhHHHHHHHhhCCC
Confidence 45555544333334444433333333333221 12334566677777776654 569999999999999999875 4
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC----C----CCCCCEEEEccchhhhCHhhHHHHHHHHhc
Q 048309 92 GCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP----K----AKKYDRIISCEMMEAVGHEYMEEYFGCCES 163 (288)
Q Consensus 92 ~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~----~----~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~ 163 (288)
+.+++++|.+++..+.|++.++..|+.++|+++.+|+.+.- . .++||+|+...- +..+..+++.+.+
T Consensus 104 ~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~iFiDad-----K~~Y~~y~~~~l~ 178 (247)
T PLN02589 104 DGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFDFIFVDAD-----KDNYINYHKRLID 178 (247)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcccEEEecCC-----HHHhHHHHHHHHH
Confidence 67999999999999999999999999899999999997742 1 268999998743 3567889999999
Q ss_pred ccccCcEEEEEee
Q 048309 164 LLAKDGLLVLQFS 176 (288)
Q Consensus 164 ~LkpgG~l~~~~~ 176 (288)
+|+|||++++...
T Consensus 179 ll~~GGviv~DNv 191 (247)
T PLN02589 179 LVKVGGVIGYDNT 191 (247)
T ss_pred hcCCCeEEEEcCC
Confidence 9999999988543
|
|
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.29 E-value=5.5e-12 Score=105.07 Aligned_cols=100 Identities=16% Similarity=0.164 Sum_probs=76.0
Q ss_pred EEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CCCCCCEEEEccchhhhC
Q 048309 72 EVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAKKYDRIISCEMMEAVG 150 (288)
Q Consensus 72 ~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~~fD~I~~~~~l~~~~ 150 (288)
.++|+|||+|..++-++.++ .+|+|+|+|++|++.+++.....-..........++.++. .+++.|+|+|..++|++
T Consensus 36 ~a~DvG~G~Gqa~~~iae~~-k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HWF- 113 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAEHY-KEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAVHWF- 113 (261)
T ss_pred eEEEeccCCCcchHHHHHhh-hhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhHHhh-
Confidence 79999999998888888874 5899999999999988876432211112233334444554 57999999999999998
Q ss_pred HhhHHHHHHHHhcccccCc-EEEEEe
Q 048309 151 HEYMEEYFGCCESLLAKDG-LLVLQF 175 (288)
Q Consensus 151 ~~~~~~~l~~~~~~LkpgG-~l~~~~ 175 (288)
+.+.+++.+.++||+.| .+.+-.
T Consensus 114 --dle~fy~~~~rvLRk~Gg~iavW~ 137 (261)
T KOG3010|consen 114 --DLERFYKEAYRVLRKDGGLIAVWN 137 (261)
T ss_pred --chHHHHHHHHHHcCCCCCEEEEEE
Confidence 67999999999998766 655533
|
|
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.2e-11 Score=100.97 Aligned_cols=127 Identities=13% Similarity=0.199 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHcCCC------CCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEc
Q 048309 53 AQMRKHSLLIEKARVS------KEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLC 126 (288)
Q Consensus 53 a~~~~~~~l~~~~~~~------~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~ 126 (288)
.-.+--..++..+... ...+.||.|+|.|+.+..+....-.+|..+|+.+..++.|++.+.... ..-.++.+.
T Consensus 33 ~Di~gS~~FL~~l~~~~~~~~~~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~-~~v~~~~~~ 111 (218)
T PF05891_consen 33 IDIQGSRNFLKKLKRGRKPGKPKFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDN-PRVGEFYCV 111 (218)
T ss_dssp HHHHHHHHHHHCCCT---------SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGG-CCEEEEEES
T ss_pred HHHHHHHHHHHHHHhhcccCCCCcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccC-CCcceEEec
Confidence 3334444556655433 356899999999999998866545689999999999999997765421 234689999
Q ss_pred ccCCCCC-CCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCCC
Q 048309 127 DYRQLPK-AKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPD 180 (288)
Q Consensus 127 d~~~~~~-~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 180 (288)
.++++.| .++||+|++.+++.|+++++..++|++|...|+|+|.+++-+.....
T Consensus 112 gLQ~f~P~~~~YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~ 166 (218)
T PF05891_consen 112 GLQDFTPEEGKYDLIWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSS 166 (218)
T ss_dssp -GGG----TT-EEEEEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESS
T ss_pred CHhhccCCCCcEeEEEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCC
Confidence 9999874 57999999999999999999999999999999999999998766543
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=8.6e-11 Score=97.90 Aligned_cols=106 Identities=11% Similarity=0.108 Sum_probs=82.7
Q ss_pred CCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC--CCCCCCEEEEccc
Q 048309 68 SKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP--KAKKYDRIISCEM 145 (288)
Q Consensus 68 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~--~~~~fD~I~~~~~ 145 (288)
.++.+|||+|||+|.++..++.+...+|+++|.++.+++.++++++..++. +++++++|+.+.. ..++||+|+++..
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~-~v~~~~~D~~~~l~~~~~~fDlV~~DPP 130 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAG-NARVVNTNALSFLAQPGTPHNVVFVDPP 130 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEEchHHHHHhhcCCCceEEEECCC
Confidence 457799999999999998755554569999999999999999999998874 7999999997643 3457999999987
Q ss_pred hhhhCHhhHHHHHHHHh--cccccCcEEEEEeec
Q 048309 146 MEAVGHEYMEEYFGCCE--SLLAKDGLLVLQFSS 177 (288)
Q Consensus 146 l~~~~~~~~~~~l~~~~--~~LkpgG~l~~~~~~ 177 (288)
+.. ......++.+. .+|+|+|.+++++..
T Consensus 131 y~~---g~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 131 FRK---GLLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred CCC---ChHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 432 22344445444 458999999997654
|
|
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.8e-10 Score=95.00 Aligned_cols=117 Identities=21% Similarity=0.228 Sum_probs=94.3
Q ss_pred HHHHHHcCCCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC---C-
Q 048309 59 SLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP---K- 133 (288)
Q Consensus 59 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~---~- 133 (288)
-.+++..-...+.+|||||||||..+.+++++ +.....-.|.++......+..+...+++.-...+..|+.+.+ .
T Consensus 15 l~vL~~~l~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~ 94 (204)
T PF06080_consen 15 LEVLKQYLPDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWEL 94 (204)
T ss_pred HHHHHHHhCccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCcccc
Confidence 33444433333436999999999999999999 888899999999998888888888887533346677776653 1
Q ss_pred -----CCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 134 -----AKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 134 -----~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
.++||+|+|.+++|-++.+..+.+++.+.++|++||.|++--
T Consensus 95 ~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YG 141 (204)
T PF06080_consen 95 PAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYG 141 (204)
T ss_pred ccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeC
Confidence 358999999999999999999999999999999999999843
|
The function of this family is unknown. |
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.28 E-value=8.2e-11 Score=110.10 Aligned_cols=115 Identities=16% Similarity=0.278 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-
Q 048309 54 QMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP- 132 (288)
Q Consensus 54 ~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~- 132 (288)
.......+++.+...++.+|||+|||+|.++..+++. ..+|+|+|+|+.+++.|+++++.+++ .+++++++|+.+..
T Consensus 282 ~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~-~~~V~gvD~s~~al~~A~~n~~~~~~-~~v~~~~~d~~~~l~ 359 (443)
T PRK13168 282 NQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQ-AAEVVGVEGVEAMVERARENARRNGL-DNVTFYHANLEEDFT 359 (443)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEeChHHhhh
Confidence 3445667777777778899999999999999999986 57999999999999999999998888 47999999997532
Q ss_pred ----CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEee
Q 048309 133 ----KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 133 ----~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
.+++||+|+++..-.-+ ...++.+.+ ++|++.+++++.
T Consensus 360 ~~~~~~~~fD~Vi~dPPr~g~-----~~~~~~l~~-~~~~~ivyvSCn 401 (443)
T PRK13168 360 DQPWALGGFDKVLLDPPRAGA-----AEVMQALAK-LGPKRIVYVSCN 401 (443)
T ss_pred hhhhhcCCCCEEEECcCCcCh-----HHHHHHHHh-cCCCeEEEEEeC
Confidence 24679999997654322 344444444 689999888753
|
|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.9e-11 Score=106.26 Aligned_cols=112 Identities=21% Similarity=0.296 Sum_probs=84.4
Q ss_pred HHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC--CCCC
Q 048309 59 SLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP--KAKK 136 (288)
Q Consensus 59 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~--~~~~ 136 (288)
..+.+.+...++.+|||+|||+|.++..+++. +.+|+|+|+++.+++.|+++++.+++ .+++++++|+.++. ..++
T Consensus 163 ~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~-~~~V~gvD~s~~av~~A~~n~~~~~l-~~v~~~~~D~~~~~~~~~~~ 240 (315)
T PRK03522 163 ATARDWVRELPPRSMWDLFCGVGGFGLHCATP-GMQLTGIEISAEAIACAKQSAAELGL-TNVQFQALDSTQFATAQGEV 240 (315)
T ss_pred HHHHHHHHhcCCCEEEEccCCCCHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEcCHHHHHHhcCCC
Confidence 34444444345689999999999999999985 68999999999999999999999998 58999999998764 3457
Q ss_pred CCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 137 YDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 137 fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
||+|++...-.-+. ..+. ++...++|++.+++++..
T Consensus 241 ~D~Vv~dPPr~G~~----~~~~-~~l~~~~~~~ivyvsc~p 276 (315)
T PRK03522 241 PDLVLVNPPRRGIG----KELC-DYLSQMAPRFILYSSCNA 276 (315)
T ss_pred CeEEEECCCCCCcc----HHHH-HHHHHcCCCeEEEEECCc
Confidence 99999985532221 1222 223446788888876543
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=99.27 E-value=7e-11 Score=103.49 Aligned_cols=107 Identities=20% Similarity=0.238 Sum_probs=82.6
Q ss_pred CCCCEEEEECCcccHHHHHHHHcc-CCEEEEEcCCHHHHHHHHHHHHHcC--C-CCceEEEEcccCCCC--CCCCCCEEE
Q 048309 68 SKEHEVLEIGCGWGTFAIEVVRQT-GCNYTGITLSAEQMKYAEMKVNEAG--L-QDHIRLYLCDYRQLP--KAKKYDRII 141 (288)
Q Consensus 68 ~~~~~vLDiGcG~G~~~~~la~~~-~~~v~giD~s~~~~~~a~~~~~~~g--~-~~~v~~~~~d~~~~~--~~~~fD~I~ 141 (288)
+.+.+||+||||+|..+..++++. ..+++++|+++++++.+++.+...+ + ..+++++.+|...+- ..++||+|+
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence 345699999999999999988873 5689999999999999999875432 1 247889998886643 357999999
Q ss_pred EccchhhhCHhh--HHHHHHHHhcccccCcEEEEE
Q 048309 142 SCEMMEAVGHEY--MEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 142 ~~~~l~~~~~~~--~~~~l~~~~~~LkpgG~l~~~ 174 (288)
+......-+... ..++++.+.+.|+|||++++.
T Consensus 151 ~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 151 VDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred EeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 976532221122 468899999999999999985
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.24 E-value=5e-11 Score=99.16 Aligned_cols=104 Identities=27% Similarity=0.376 Sum_probs=83.5
Q ss_pred CEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCC-C---CCCCCCEEEEccc
Q 048309 71 HEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQL-P---KAKKYDRIISCEM 145 (288)
Q Consensus 71 ~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~-~---~~~~fD~I~~~~~ 145 (288)
..+||||||.|.++..+|.. +...++|+|++...+..+.+++...++ +|+.++++|+..+ . +++++|.|+..+.
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l-~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FP 97 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGL-KNVRFLRGDARELLRRLFPPGSVDRIYINFP 97 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTT-SSEEEEES-CTTHHHHHSTTTSEEEEEEES-
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcc-cceEEEEccHHHHHhhcccCCchheEEEeCC
Confidence 38999999999999999998 999999999999999999999999998 5999999999883 2 5689999999887
Q ss_pred hhhhCHhh------HHHHHHHHhcccccCcEEEEEe
Q 048309 146 MEAVGHEY------MEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 146 l~~~~~~~------~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
-.+..... -..+++.+.++|+|||.+.+.+
T Consensus 98 DPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~T 133 (195)
T PF02390_consen 98 DPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFAT 133 (195)
T ss_dssp ----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEe
Confidence 65542111 3679999999999999998854
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.7e-10 Score=102.39 Aligned_cols=107 Identities=17% Similarity=0.221 Sum_probs=84.0
Q ss_pred CCCCEEEEECCcccHHHHHHHHcc-CCEEEEEcCCHHHHHHHHHHHHHc--CC-CCceEEEEcccCCCC---CCCCCCEE
Q 048309 68 SKEHEVLEIGCGWGTFAIEVVRQT-GCNYTGITLSAEQMKYAEMKVNEA--GL-QDHIRLYLCDYRQLP---KAKKYDRI 140 (288)
Q Consensus 68 ~~~~~vLDiGcG~G~~~~~la~~~-~~~v~giD~s~~~~~~a~~~~~~~--g~-~~~v~~~~~d~~~~~---~~~~fD~I 140 (288)
+.+++||+||||.|..+..+++++ ..+|+.+|+++.+++.|++.+... ++ .++++++.+|+..+- +.++||+|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 457899999999999999999874 368999999999999999987653 22 358999999986543 25689999
Q ss_pred EEccchhhhCHh--hHHHHHHHHhcccccCcEEEEE
Q 048309 141 ISCEMMEAVGHE--YMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 141 ~~~~~l~~~~~~--~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
++...-.+.+.. --.++++.+.+.|+|||+++..
T Consensus 170 i~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 170 IVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred EEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 997544322111 1367899999999999998764
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=9.4e-11 Score=98.92 Aligned_cols=98 Identities=12% Similarity=0.144 Sum_probs=76.4
Q ss_pred CCCEEEEECCcccHHHHHHHHc----cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCEEEEcc
Q 048309 69 KEHEVLEIGCGWGTFAIEVVRQ----TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCE 144 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~~la~~----~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~~~~ 144 (288)
.+.+|||+|||+|.++..+++. ...+|+++|+++.+++.|+++.. ++.++++|+...+.+++||+|+++.
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~------~~~~~~~D~~~~~~~~~FDlIIsNP 122 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP------EATWINADALTTEFDTLFDMAISNP 122 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc------CCEEEEcchhcccccCCccEEEECC
Confidence 3679999999999999998874 24589999999999999997752 4789999998766557999999997
Q ss_pred chhhhC----------HhhHHHHHHHHhcccccCcEEEE
Q 048309 145 MMEAVG----------HEYMEEYFGCCESLLAKDGLLVL 173 (288)
Q Consensus 145 ~l~~~~----------~~~~~~~l~~~~~~LkpgG~l~~ 173 (288)
.+.-.. ......+++++.+++++|+. ++
T Consensus 123 PY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~-IL 160 (241)
T PHA03412 123 PFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF-II 160 (241)
T ss_pred CCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE-Ee
Confidence 665321 12245688888886666664 44
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.3e-10 Score=99.46 Aligned_cols=113 Identities=15% Similarity=0.184 Sum_probs=89.7
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCC--C
Q 048309 56 RKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQ--L 131 (288)
Q Consensus 56 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~--~ 131 (288)
.-+..++..+++.||.+|||.|.|+|.++..+++. +..+|+..|..++..+.|+++++..|+++++++.+.|+.. +
T Consensus 27 kD~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~ 106 (247)
T PF08704_consen 27 KDISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGF 106 (247)
T ss_dssp HHHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--
T ss_pred chHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccc
Confidence 34567888999999999999999999999999986 5679999999999999999999999998899999999975 2
Q ss_pred C--CCCCCCEEEEccchhhhCHhhHHHHHHHHhccc-ccCcEEEEEe
Q 048309 132 P--KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLL-AKDGLLVLQF 175 (288)
Q Consensus 132 ~--~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~L-kpgG~l~~~~ 175 (288)
+ .+..+|+|+..- +++-.++..+.+.| ++||++++-.
T Consensus 107 ~~~~~~~~DavfLDl-------p~Pw~~i~~~~~~L~~~gG~i~~fs 146 (247)
T PF08704_consen 107 DEELESDFDAVFLDL-------PDPWEAIPHAKRALKKPGGRICCFS 146 (247)
T ss_dssp STT-TTSEEEEEEES-------SSGGGGHHHHHHHE-EEEEEEEEEE
T ss_pred cccccCcccEEEEeC-------CCHHHHHHHHHHHHhcCCceEEEEC
Confidence 2 246899999853 44556777788999 8999998743
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.6e-10 Score=102.04 Aligned_cols=107 Identities=23% Similarity=0.311 Sum_probs=81.8
Q ss_pred CCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHH-----HHcCC-CCceEEEEcccCCCC--CCCCCC
Q 048309 68 SKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKV-----NEAGL-QDHIRLYLCDYRQLP--KAKKYD 138 (288)
Q Consensus 68 ~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~-----~~~g~-~~~v~~~~~d~~~~~--~~~~fD 138 (288)
..+.+||+||||+|..+..++++ +..+|++||+++++++.|++.. ...++ .++++++.+|+.++. ..++||
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 45579999999999999999887 4479999999999999999621 11122 368999999999854 557899
Q ss_pred EEEEccchh---hhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 139 RIISCEMME---AVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 139 ~I~~~~~l~---~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
+|++...-. ....-.-.++++.+.+.|+|||++++.
T Consensus 229 VIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Q 267 (374)
T PRK01581 229 VIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQ 267 (374)
T ss_pred EEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 999984311 111112367999999999999998875
|
|
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.18 E-value=7.7e-10 Score=93.89 Aligned_cols=119 Identities=19% Similarity=0.310 Sum_probs=91.5
Q ss_pred HHHHHcCCCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCC-----C-
Q 048309 60 LLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQL-----P- 132 (288)
Q Consensus 60 ~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~-----~- 132 (288)
..+.......+..+||+|||+|..+..++.. +.+.|+++|.|+.++..|.++++..++.+++.++.-+++.- +
T Consensus 139 d~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l 218 (328)
T KOG2904|consen 139 DALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPL 218 (328)
T ss_pred HHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEeccccccccccccc
Confidence 3333333445668999999999999999988 88899999999999999999999999988999997766542 1
Q ss_pred CCCCCCEEEEccchh-h-----h------------------CHhhHHHHHHHHhcccccCcEEEEEeecC
Q 048309 133 KAKKYDRIISCEMME-A-----V------------------GHEYMEEYFGCCESLLAKDGLLVLQFSST 178 (288)
Q Consensus 133 ~~~~fD~I~~~~~l~-~-----~------------------~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 178 (288)
..++.|+++|+...- + + +-.....++.-+.|.|+|||.+.+.....
T Consensus 219 ~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~~ 288 (328)
T KOG2904|consen 219 LEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVER 288 (328)
T ss_pred ccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEeccc
Confidence 458999999985321 0 0 01334556777889999999999976643
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=99.18 E-value=4e-10 Score=103.10 Aligned_cols=110 Identities=15% Similarity=0.239 Sum_probs=85.4
Q ss_pred HHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC--CCCC
Q 048309 59 SLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP--KAKK 136 (288)
Q Consensus 59 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~--~~~~ 136 (288)
..+.+.+...++.+|||+|||+|.++..++.. +.+|+|+|+++.+++.|+++++.++++ +++++.+|+.++. ...+
T Consensus 223 ~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~-~~~v~~vE~~~~av~~a~~N~~~~~~~-~~~~~~~d~~~~~~~~~~~ 300 (374)
T TIGR02085 223 ATARQWVREIPVTQMWDLFCGVGGFGLHCAGP-DTQLTGIEIESEAIACAQQSAQMLGLD-NLSFAALDSAKFATAQMSA 300 (374)
T ss_pred HHHHHHHHhcCCCEEEEccCCccHHHHHHhhc-CCeEEEEECCHHHHHHHHHHHHHcCCC-cEEEEECCHHHHHHhcCCC
Confidence 34444444345679999999999999999975 679999999999999999999999984 8999999997754 2356
Q ss_pred CCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 137 YDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 137 fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
||+|++...-..+. ..+++.+. .++|++.+++++
T Consensus 301 ~D~vi~DPPr~G~~----~~~l~~l~-~~~p~~ivyvsc 334 (374)
T TIGR02085 301 PELVLVNPPRRGIG----KELCDYLS-QMAPKFILYSSC 334 (374)
T ss_pred CCEEEECCCCCCCc----HHHHHHHH-hcCCCeEEEEEe
Confidence 99999987654332 33444443 479999988865
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.14 E-value=8.1e-10 Score=89.23 Aligned_cols=82 Identities=17% Similarity=0.250 Sum_probs=69.2
Q ss_pred HHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCEEE
Q 048309 62 IEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRII 141 (288)
Q Consensus 62 ~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~ 141 (288)
+...+.-.|.+|+|+|||||.++...+-....+|+|+|+++++++.+++++++.+ .+++++++|+.++. ..+|.++
T Consensus 38 a~~~g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~--g~v~f~~~dv~~~~--~~~dtvi 113 (198)
T COG2263 38 AYLRGDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELL--GDVEFVVADVSDFR--GKFDTVI 113 (198)
T ss_pred HHHcCCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhC--CceEEEEcchhhcC--CccceEE
Confidence 3344555788999999999999998877655799999999999999999998833 68999999999976 6789999
Q ss_pred Eccchh
Q 048309 142 SCEMME 147 (288)
Q Consensus 142 ~~~~l~ 147 (288)
.+..+.
T Consensus 114 mNPPFG 119 (198)
T COG2263 114 MNPPFG 119 (198)
T ss_pred ECCCCc
Confidence 887664
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.7e-10 Score=109.75 Aligned_cols=108 Identities=25% Similarity=0.241 Sum_probs=83.5
Q ss_pred CCCCEEEEECCcccHHHHHHHHccC-CEEEEEcCCHHHHHHHHHH--HHHc---CC-CCceEEEEcccCCCC--CCCCCC
Q 048309 68 SKEHEVLEIGCGWGTFAIEVVRQTG-CNYTGITLSAEQMKYAEMK--VNEA---GL-QDHIRLYLCDYRQLP--KAKKYD 138 (288)
Q Consensus 68 ~~~~~vLDiGcG~G~~~~~la~~~~-~~v~giD~s~~~~~~a~~~--~~~~---g~-~~~v~~~~~d~~~~~--~~~~fD 138 (288)
+++++|||||||+|..+..+++++. .+++++|+++++++.++++ +... .+ .++++++.+|..++. .+++||
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 4567999999999999999988744 6999999999999999983 2211 12 247999999998753 457999
Q ss_pred EEEEccchhhhCH---hhHHHHHHHHhcccccCcEEEEEe
Q 048309 139 RIISCEMMEAVGH---EYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 139 ~I~~~~~l~~~~~---~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
+|++.......+. -...++++.+.+.|+|||+++++.
T Consensus 376 vIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 376 VIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred EEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence 9999865332210 112568999999999999999864
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.11 E-value=4.5e-10 Score=95.14 Aligned_cols=105 Identities=25% Similarity=0.313 Sum_probs=90.1
Q ss_pred CCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC----CCCCCCEEEEcc
Q 048309 70 EHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP----KAKKYDRIISCE 144 (288)
Q Consensus 70 ~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~----~~~~fD~I~~~~ 144 (288)
...+||||||.|.+...+|++ |...++|||+....+..|.+.+.+.+++ |+.+++.|+..+- ++++.|-|+.++
T Consensus 49 ~pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~-Nlri~~~DA~~~l~~~~~~~sl~~I~i~F 127 (227)
T COG0220 49 APIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLK-NLRLLCGDAVEVLDYLIPDGSLDKIYINF 127 (227)
T ss_pred CcEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCC-cEEEEcCCHHHHHHhcCCCCCeeEEEEEC
Confidence 358999999999999999998 8899999999999999999999999985 9999999998743 556999999988
Q ss_pred chhhhCHh------hHHHHHHHHhcccccCcEEEEEe
Q 048309 145 MMEAVGHE------YMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 145 ~l~~~~~~------~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
.--|.... -...+++.+.+.|+|||.+.+.+
T Consensus 128 PDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 128 PDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEe
Confidence 76554111 13679999999999999999843
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.3e-09 Score=89.18 Aligned_cols=109 Identities=17% Similarity=0.301 Sum_probs=78.1
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcC--CCCceEEEEcccCCCC-----CCCCC
Q 048309 66 RVSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAG--LQDHIRLYLCDYRQLP-----KAKKY 137 (288)
Q Consensus 66 ~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g--~~~~v~~~~~d~~~~~-----~~~~f 137 (288)
...++.+|||+|||+|..++.++.. ...+|+..|.++ .++.++.+++.++ ...++.+...|..+.. ...+|
T Consensus 42 ~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~ 120 (173)
T PF10294_consen 42 ELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSF 120 (173)
T ss_dssp GGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSB
T ss_pred hhcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccC
Confidence 3457889999999999999999987 578999999988 9999999999876 5568899998886521 34689
Q ss_pred CEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 138 DRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 138 D~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
|+|++..+++.- +..+.+++.+.++|+++|.+++....
T Consensus 121 D~IlasDv~Y~~--~~~~~L~~tl~~ll~~~~~vl~~~~~ 158 (173)
T PF10294_consen 121 DVILASDVLYDE--ELFEPLVRTLKRLLKPNGKVLLAYKR 158 (173)
T ss_dssp SEEEEES--S-G--GGHHHHHHHHHHHBTT-TTEEEEEE-
T ss_pred CEEEEecccchH--HHHHHHHHHHHHHhCCCCEEEEEeCE
Confidence 999999999876 78899999999999999997775543
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=99.11 E-value=7.2e-10 Score=111.66 Aligned_cols=110 Identities=21% Similarity=0.395 Sum_probs=85.5
Q ss_pred CCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCC---------------CceEEEEcccCCCCC
Q 048309 70 EHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQ---------------DHIRLYLCDYRQLPK 133 (288)
Q Consensus 70 ~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~---------------~~v~~~~~d~~~~~~ 133 (288)
+.+|||+|||+|..++.+++. +..+|+|+|+|+.+++.|+++++.+++. ++++++++|+.+...
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 468999999999999999987 5579999999999999999999876432 479999999987542
Q ss_pred --CCCCCEEEEccch------hhhC------------------------------HhhHHHHHHHHhcccccCcEEEEEe
Q 048309 134 --AKKYDRIISCEMM------EAVG------------------------------HEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 134 --~~~fD~I~~~~~l------~~~~------------------------------~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
..+||+|+++... ..+. -.-+..+++++.++|+|||.+++..
T Consensus 199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEi 278 (1082)
T PLN02672 199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNM 278 (1082)
T ss_pred ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 2379999997531 1110 0123667888889999999999876
Q ss_pred ecCC
Q 048309 176 SSTP 179 (288)
Q Consensus 176 ~~~~ 179 (288)
....
T Consensus 279 G~~q 282 (1082)
T PLN02672 279 GGRP 282 (1082)
T ss_pred CccH
Confidence 5433
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.2e-09 Score=102.00 Aligned_cols=114 Identities=15% Similarity=0.222 Sum_probs=87.9
Q ss_pred HHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC--
Q 048309 55 MRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-- 132 (288)
Q Consensus 55 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-- 132 (288)
...+..+.+.+...++.+|||+|||+|.++..+++. ..+|+|+|+++.+++.|+++++.+++ .+++++.+|+.+..
T Consensus 278 ~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~-~~~V~~vE~~~~av~~a~~n~~~~~~-~nv~~~~~d~~~~l~~ 355 (431)
T TIGR00479 278 EKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQ-AKSVVGIEVVPESVEKAQQNAELNGI-ANVEFLAGTLETVLPK 355 (431)
T ss_pred HHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHh-CCEEEEEEcCHHHHHHHHHHHHHhCC-CceEEEeCCHHHHHHH
Confidence 344556667777777889999999999999999986 56899999999999999999999888 58999999997631
Q ss_pred ---CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 133 ---KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 133 ---~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
...+||+|++...-..+ ...+++.+. .++|++.+++++
T Consensus 356 ~~~~~~~~D~vi~dPPr~G~----~~~~l~~l~-~l~~~~ivyvsc 396 (431)
T TIGR00479 356 QPWAGQIPDVLLLDPPRKGC----AAEVLRTII-ELKPERIVYVSC 396 (431)
T ss_pred HHhcCCCCCEEEECcCCCCC----CHHHHHHHH-hcCCCEEEEEcC
Confidence 24579999986542221 244455444 378998877743
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.09 E-value=8.5e-10 Score=97.11 Aligned_cols=106 Identities=21% Similarity=0.316 Sum_probs=84.3
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CCCCCCEEEEcc
Q 048309 66 RVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAKKYDRIISCE 144 (288)
Q Consensus 66 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~~fD~I~~~~ 144 (288)
.+-.++.|||+|||+|.++...|+....+|+++|.|. +.+.|++.+..+++.+.++++.+.++++. |..+.|+|++-+
T Consensus 57 ~lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~-ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEW 135 (346)
T KOG1499|consen 57 HLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASS-IADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEW 135 (346)
T ss_pred hhcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechH-HHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehh
Confidence 3457899999999999999999998667899999655 66999999999999888999999999987 568999999965
Q ss_pred chhhhC-HhhHHHHHHHHhcccccCcEEE
Q 048309 145 MMEAVG-HEYMEEYFGCCESLLAKDGLLV 172 (288)
Q Consensus 145 ~l~~~~-~~~~~~~l~~~~~~LkpgG~l~ 172 (288)
.=+.+- ..-+..++-.=-++|+|||.++
T Consensus 136 MGy~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 136 MGYFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred hhHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 433331 1223444444458999999875
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=99.08 E-value=7.9e-10 Score=102.84 Aligned_cols=103 Identities=19% Similarity=0.344 Sum_probs=78.5
Q ss_pred CCEEEEECCcccHHHHHHHHc-----cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCEEEEcc
Q 048309 70 EHEVLEIGCGWGTFAIEVVRQ-----TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCE 144 (288)
Q Consensus 70 ~~~vLDiGcG~G~~~~~la~~-----~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~~~~ 144 (288)
+..|+|+|||+|-++...++. ...+|++||-++.++...++++..+++.++|+++.+|++++..+.++|+||+-.
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIVSEl 266 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIVSEL 266 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEEE--
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEEEec
Confidence 568999999999998776654 236899999999999888888888899889999999999999667999999843
Q ss_pred chhhhCHhhHHHHHHHHhcccccCcEEE
Q 048309 145 MMEAVGHEYMEEYFGCCESLLAKDGLLV 172 (288)
Q Consensus 145 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~ 172 (288)
.=.....+-..+.+....+.|||||.++
T Consensus 267 LGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 267 LGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp -BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred cCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 2111111455677888899999999765
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.08 E-value=8.3e-10 Score=91.66 Aligned_cols=114 Identities=18% Similarity=0.275 Sum_probs=74.1
Q ss_pred HHHHcCCCCCCEEEEECCcccH----HHHHHHHc----c--CCEEEEEcCCHHHHHHHHHHH----HHcCC---------
Q 048309 61 LIEKARVSKEHEVLEIGCGWGT----FAIEVVRQ----T--GCNYTGITLSAEQMKYAEMKV----NEAGL--------- 117 (288)
Q Consensus 61 l~~~~~~~~~~~vLDiGcG~G~----~~~~la~~----~--~~~v~giD~s~~~~~~a~~~~----~~~g~--------- 117 (288)
+++.....+.-+|+..||++|. +++.+.+. . ..+|+|.|+|+.+++.|++-. .-.++
T Consensus 23 ~~~~~~~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf 102 (196)
T PF01739_consen 23 LLARARPGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYF 102 (196)
T ss_dssp -----CS-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHE
T ss_pred hccccCCCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhc
Confidence 3333333456799999999995 44555441 1 358999999999999998521 00011
Q ss_pred --------------CCceEEEEcccCC-CCCCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 118 --------------QDHIRLYLCDYRQ-LPKAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 118 --------------~~~v~~~~~d~~~-~~~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
..+|+|...|+.+ .+..+.||+|+|-+++-++.++....+++++++.|+|||.|++.
T Consensus 103 ~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG 174 (196)
T PF01739_consen 103 TERDGGGYRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLG 174 (196)
T ss_dssp EEE-CCCTTE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-
T ss_pred cccCCCceeEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEe
Confidence 1579999999999 44778999999999999998889999999999999999999983
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.7e-09 Score=87.60 Aligned_cols=106 Identities=9% Similarity=-0.000 Sum_probs=81.9
Q ss_pred CCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC----CCC-CCCEEEEc
Q 048309 69 KEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP----KAK-KYDRIISC 143 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~----~~~-~fD~I~~~ 143 (288)
.+.+|||++||+|.++..++++...+|+++|.++.+++.++++++..++..+++++.+|+.+.. ... .||+|+..
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~D 128 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLD 128 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEEC
Confidence 5789999999999999999997445899999999999999999999988668999999996531 122 47888887
Q ss_pred cchhhhCHhhHHHHHHHH--hcccccCcEEEEEeec
Q 048309 144 EMMEAVGHEYMEEYFGCC--ESLLAKDGLLVLQFSS 177 (288)
Q Consensus 144 ~~l~~~~~~~~~~~l~~~--~~~LkpgG~l~~~~~~ 177 (288)
..+.. ......++.+ ..+|+++|.+++....
T Consensus 129 PPy~~---~~~~~~l~~l~~~~~l~~~~iiv~E~~~ 161 (189)
T TIGR00095 129 PPFFN---GALQALLELCENNWILEDTVLIVVEEDR 161 (189)
T ss_pred cCCCC---CcHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence 66542 2233444433 3579999998887544
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.3e-09 Score=96.30 Aligned_cols=90 Identities=16% Similarity=0.199 Sum_probs=76.8
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCC
Q 048309 56 RKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAK 135 (288)
Q Consensus 56 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~ 135 (288)
..+..+++.+...++.+|||||||+|.++..+++. +.+|+++|+++.+++.+++++...+..++++++.+|+.+.+. .
T Consensus 23 ~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~-~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~-~ 100 (294)
T PTZ00338 23 LVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQL-AKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF-P 100 (294)
T ss_pred HHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHh-CCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc-c
Confidence 45667888888888999999999999999999986 678999999999999999998877655689999999988763 3
Q ss_pred CCCEEEEccchh
Q 048309 136 KYDRIISCEMME 147 (288)
Q Consensus 136 ~fD~I~~~~~l~ 147 (288)
.||.|+++...+
T Consensus 101 ~~d~VvaNlPY~ 112 (294)
T PTZ00338 101 YFDVCVANVPYQ 112 (294)
T ss_pred ccCEEEecCCcc
Confidence 689999875544
|
|
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=2e-09 Score=95.76 Aligned_cols=81 Identities=22% Similarity=0.346 Sum_probs=66.1
Q ss_pred CCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHc-CCCCceEEEEc-ccCCCC-----CCCCCCEE
Q 048309 69 KEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEA-GLQDHIRLYLC-DYRQLP-----KAKKYDRI 140 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~-g~~~~v~~~~~-d~~~~~-----~~~~fD~I 140 (288)
++.++||||||+|.....++.+ ++++++|+|+++.+++.|+++++.+ ++.++++++.. |..++. ..+.||+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 4579999999999888877766 7889999999999999999999999 78878888653 333221 35689999
Q ss_pred EEccchhhh
Q 048309 141 ISCEMMEAV 149 (288)
Q Consensus 141 ~~~~~l~~~ 149 (288)
+|+..++.-
T Consensus 194 vcNPPf~~s 202 (321)
T PRK11727 194 LCNPPFHAS 202 (321)
T ss_pred EeCCCCcCc
Confidence 999887654
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.2e-09 Score=87.24 Aligned_cols=115 Identities=21% Similarity=0.305 Sum_probs=85.2
Q ss_pred HHHHHHcCCCCCCEEEEECCcccHHHHHHHHc-cCCE---------EEEEcCCHHHHHHHHHHHHHcCCCCceEEEEccc
Q 048309 59 SLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-TGCN---------YTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDY 128 (288)
Q Consensus 59 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~---------v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~ 128 (288)
..++.....+++..|||.-||+|++.+..+.. .... ++|.|+++.+++.|+++++..++...+.+.+.|+
T Consensus 18 ~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~ 97 (179)
T PF01170_consen 18 AALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDA 97 (179)
T ss_dssp HHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--G
T ss_pred HHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecch
Confidence 44566667788899999999999999887765 3444 8899999999999999999999988899999999
Q ss_pred CCCC-CCCCCCEEEEccchhhh-C-----HhhHHHHHHHHhcccccCcEEEE
Q 048309 129 RQLP-KAKKYDRIISCEMMEAV-G-----HEYMEEYFGCCESLLAKDGLLVL 173 (288)
Q Consensus 129 ~~~~-~~~~fD~I~~~~~l~~~-~-----~~~~~~~l~~~~~~LkpgG~l~~ 173 (288)
.+++ ..+++|+|+++..+..- + ..-+..+++++.++|++..++++
T Consensus 98 ~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~ 149 (179)
T PF01170_consen 98 RELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLT 149 (179)
T ss_dssp GGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEE
T ss_pred hhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEE
Confidence 9999 77899999998765432 1 13356778999999999444443
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.4e-09 Score=94.71 Aligned_cols=115 Identities=22% Similarity=0.313 Sum_probs=93.1
Q ss_pred HHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEc-ccCCCC-CCCCC
Q 048309 60 LLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLC-DYRQLP-KAKKY 137 (288)
Q Consensus 60 ~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~-d~~~~~-~~~~f 137 (288)
.+++....++|..|||--||||++.+...- .|++++|+|++..|++-|+.+++..+++ ...+... |+..++ +..++
T Consensus 188 ~mVNLa~v~~G~~vlDPFcGTGgiLiEagl-~G~~viG~Did~~mv~gak~Nl~~y~i~-~~~~~~~~Da~~lpl~~~~v 265 (347)
T COG1041 188 AMVNLARVKRGELVLDPFCGTGGILIEAGL-MGARVIGSDIDERMVRGAKINLEYYGIE-DYPVLKVLDATNLPLRDNSV 265 (347)
T ss_pred HHHHHhccccCCEeecCcCCccHHHHhhhh-cCceEeecchHHHHHhhhhhhhhhhCcC-ceeEEEecccccCCCCCCcc
Confidence 445556678999999999999999998776 5999999999999999999999999875 4555555 999999 55579
Q ss_pred CEEEEccchhhhC-------HhhHHHHHHHHhcccccCcEEEEEee
Q 048309 138 DRIISCEMMEAVG-------HEYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 138 D~I~~~~~l~~~~-------~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
|+|++.....-.+ .+-+.++++.++++|++||++++...
T Consensus 266 daIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 266 DAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred ceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 9999976442211 13478899999999999999998443
|
|
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=99.04 E-value=2e-09 Score=93.79 Aligned_cols=105 Identities=22% Similarity=0.251 Sum_probs=85.5
Q ss_pred CCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCEEEEccchh
Q 048309 68 SKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMME 147 (288)
Q Consensus 68 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~~~~~l~ 147 (288)
-.++.|||+|||+|.++...++....+|.+|+. .+|.+.|++.++.+.+.++|.++.+.++++..+++.|+|++-.+=.
T Consensus 176 F~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEA-S~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPEk~DviISEPMG~ 254 (517)
T KOG1500|consen 176 FQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEA-SEMAQYARKLVASNNLADRITVIPGKIEDIELPEKVDVIISEPMGY 254 (517)
T ss_pred cCCcEEEEecCCccHHHHHHHHhCcceEEEEeh-hHHHHHHHHHHhcCCccceEEEccCccccccCchhccEEEeccchh
Confidence 467899999999999999988876678999995 6799999999999999999999999999999779999999864432
Q ss_pred hhCHhhHHHHHHHHhcccccCcEEEE
Q 048309 148 AVGHEYMEEYFGCCESLLAKDGLLVL 173 (288)
Q Consensus 148 ~~~~~~~~~~l~~~~~~LkpgG~l~~ 173 (288)
-+-.+.+.+-.-.++++|+|.|.++=
T Consensus 255 mL~NERMLEsYl~Ark~l~P~GkMfP 280 (517)
T KOG1500|consen 255 MLVNERMLESYLHARKWLKPNGKMFP 280 (517)
T ss_pred hhhhHHHHHHHHHHHhhcCCCCcccC
Confidence 22113344444456699999998874
|
|
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.2e-09 Score=91.06 Aligned_cols=106 Identities=18% Similarity=0.396 Sum_probs=77.1
Q ss_pred CCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcC------------------------------
Q 048309 68 SKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAG------------------------------ 116 (288)
Q Consensus 68 ~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g------------------------------ 116 (288)
-.+..+|||||..|.++..+|+. ....+.|+|+++..++.|++.++.-.
T Consensus 57 f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a 136 (288)
T KOG2899|consen 57 FEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRA 136 (288)
T ss_pred cCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccccc
Confidence 35678999999999999999998 44579999999999999998765310
Q ss_pred ----CCCceEEEE-------cccCCCCCCCCCCEEEEccchh--hh--CHhhHHHHHHHHhcccccCcEEEEE
Q 048309 117 ----LQDHIRLYL-------CDYRQLPKAKKYDRIISCEMME--AV--GHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 117 ----~~~~v~~~~-------~d~~~~~~~~~fD~I~~~~~l~--~~--~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
++.++.+.. .|+.+. ....||+|+|..+-- |+ +++-+..+++++.++|.|||+|++.
T Consensus 137 ~t~~~p~n~~f~~~n~vle~~dfl~~-~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 137 FTTDFPDNVWFQKENYVLESDDFLDM-IQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred ccccCCcchhcccccEEEecchhhhh-ccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 001111111 122211 346899999976533 33 4567899999999999999999984
|
|
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.1e-09 Score=96.59 Aligned_cols=109 Identities=24% Similarity=0.268 Sum_probs=90.6
Q ss_pred CCCEEEEECCcccHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCC-CceEEEEcccCCCC-----CCCCCCEEE
Q 048309 69 KEHEVLEIGCGWGTFAIEVVRQTGC-NYTGITLSAEQMKYAEMKVNEAGLQ-DHIRLYLCDYRQLP-----KAKKYDRII 141 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~~la~~~~~-~v~giD~s~~~~~~a~~~~~~~g~~-~~v~~~~~d~~~~~-----~~~~fD~I~ 141 (288)
.|++|||+-|=||.++.+.|.. |+ +||+||+|...++.|+++++.+|++ .++.++++|+.++- ...+||+|+
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~g-GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIi 295 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALG-GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLII 295 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhc-CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEE
Confidence 3899999999999999999986 55 9999999999999999999999984 45899999998854 445999999
Q ss_pred Eccchhh------h-CHhhHHHHHHHHhcccccCcEEEEEeecC
Q 048309 142 SCEMMEA------V-GHEYMEEYFGCCESLLAKDGLLVLQFSST 178 (288)
Q Consensus 142 ~~~~l~~------~-~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 178 (288)
....-.. . ...++..++..+.++|+|||.+++.+...
T Consensus 296 lDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~ 339 (393)
T COG1092 296 LDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSR 339 (393)
T ss_pred ECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 8642110 0 12567889999999999999999976553
|
|
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.2e-09 Score=93.40 Aligned_cols=87 Identities=17% Similarity=0.237 Sum_probs=73.7
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCC
Q 048309 56 RKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAK 135 (288)
Q Consensus 56 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~ 135 (288)
.....+++.++..++.+|||||||+|.++..+++. +.+++++|+++.+++.+++++.. . ++++++++|+.+++. .
T Consensus 16 ~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~-~~~v~~vEid~~~~~~l~~~~~~--~-~~v~ii~~D~~~~~~-~ 90 (258)
T PRK14896 16 RVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKR-AKKVYAIELDPRLAEFLRDDEIA--A-GNVEIIEGDALKVDL-P 90 (258)
T ss_pred HHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHhcc--C-CCEEEEEeccccCCc-h
Confidence 45667788888888999999999999999999997 67999999999999999988754 2 579999999998773 2
Q ss_pred CCCEEEEccchh
Q 048309 136 KYDRIISCEMME 147 (288)
Q Consensus 136 ~fD~I~~~~~l~ 147 (288)
.||.|+++..++
T Consensus 91 ~~d~Vv~NlPy~ 102 (258)
T PRK14896 91 EFNKVVSNLPYQ 102 (258)
T ss_pred hceEEEEcCCcc
Confidence 589999986654
|
|
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.01 E-value=9.6e-09 Score=82.24 Aligned_cols=135 Identities=17% Similarity=0.197 Sum_probs=99.1
Q ss_pred hhhhcCCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHc
Q 048309 38 ISYHYDLDEDEDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQMKYAEMKVNEA 115 (288)
Q Consensus 38 ~a~~Yd~~~~~~l~~a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~giD~s~~~~~~a~~~~~~~ 115 (288)
++..|+..++..+ -...++.-...+.......++|||||+|..+..+++. ++..+.++|++|.+.+...+.++.+
T Consensus 15 f~dVYEPaEDTFl---LlDaLekd~~eL~~~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n 91 (209)
T KOG3191|consen 15 FSDVYEPAEDTFL---LLDALEKDAAELKGHNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCN 91 (209)
T ss_pred hhhccCccchhhH---HHHHHHHHHHHHhhcCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhc
Confidence 3467887644322 2222222233333334678999999999999999987 6678999999999999999999988
Q ss_pred CCCCceEEEEcccCCCCCCCCCCEEEEccchh----------hh---------CHhhHHHHHHHHhcccccCcEEEEEee
Q 048309 116 GLQDHIRLYLCDYRQLPKAKKYDRIISCEMME----------AV---------GHEYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 116 g~~~~v~~~~~d~~~~~~~~~fD~I~~~~~l~----------~~---------~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
+. +++.++.|+.+--..++.|+++.+.... .+ +.+-...++.++-.+|.|.|++++...
T Consensus 92 ~~--~~~~V~tdl~~~l~~~~VDvLvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~ 169 (209)
T KOG3191|consen 92 RV--HIDVVRTDLLSGLRNESVDVLVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVAL 169 (209)
T ss_pred CC--ccceeehhHHhhhccCCccEEEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeeh
Confidence 86 5899999998866448999999875331 11 223356788888899999999999665
Q ss_pred c
Q 048309 177 S 177 (288)
Q Consensus 177 ~ 177 (288)
.
T Consensus 170 ~ 170 (209)
T KOG3191|consen 170 R 170 (209)
T ss_pred h
Confidence 4
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.4e-09 Score=93.88 Aligned_cols=86 Identities=14% Similarity=0.213 Sum_probs=70.9
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCC-
Q 048309 57 KHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAK- 135 (288)
Q Consensus 57 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~- 135 (288)
....+++.+...++.+|||||||+|.++..++++ +.+|+|+|+++.+++.+++++.. ++++++++|+.+++.+.
T Consensus 30 i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~-~~~v~avE~d~~~~~~~~~~~~~----~~v~~i~~D~~~~~~~~~ 104 (272)
T PRK00274 30 ILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLER-AAKVTAVEIDRDLAPILAETFAE----DNLTIIEGDALKVDLSEL 104 (272)
T ss_pred HHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHh-CCcEEEEECCHHHHHHHHHhhcc----CceEEEEChhhcCCHHHc
Confidence 4567778888888899999999999999999997 45999999999999999887643 47999999999987322
Q ss_pred CCCEEEEccchh
Q 048309 136 KYDRIISCEMME 147 (288)
Q Consensus 136 ~fD~I~~~~~l~ 147 (288)
..|.|+++....
T Consensus 105 ~~~~vv~NlPY~ 116 (272)
T PRK00274 105 QPLKVVANLPYN 116 (272)
T ss_pred CcceEEEeCCcc
Confidence 258888876543
|
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.3e-08 Score=85.19 Aligned_cols=143 Identities=17% Similarity=0.235 Sum_probs=107.9
Q ss_pred chhhhhhhhhHHHHHhhhhhcCChHHHHHhhhhhcCCCCCCCHHHHHHHHHHHHHHHcC---CCC--CCEEEEECCcccH
Q 048309 8 LDALVSKVNQKSYFLRHISRKNSLAQAHRNISYHYDLDEDEDLKVAQMRKHSLLIEKAR---VSK--EHEVLEIGCGWGT 82 (288)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~Yd~~~~~~l~~a~~~~~~~l~~~~~---~~~--~~~vLDiGcG~G~ 82 (288)
.+....++-+++.+|. .+...|+.....+. ..-..+++++.+. ..+ +.+++|||+|.|-
T Consensus 17 ~~~~~~~l~~Y~~lL~-------------~wN~~~NLt~~~~~---~e~~~rHilDSl~~~~~~~~~~~~~~DIGSGaGf 80 (215)
T COG0357 17 TEEQLEKLEAYVELLL-------------KWNKAYNLTAIRDP---EELWQRHILDSLVLLPYLDGKAKRVLDIGSGAGF 80 (215)
T ss_pred cHHHHHHHHHHHHHHH-------------HhhHhcCCCCCCCH---HHHHHHHHHHHhhhhhcccccCCEEEEeCCCCCC
Confidence 3455666777776654 44556666533333 3334455555543 222 5799999999999
Q ss_pred HHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCC-CCEEEEccchhhhCHhhHHHHHHH
Q 048309 83 FAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKK-YDRIISCEMMEAVGHEYMEEYFGC 160 (288)
Q Consensus 83 ~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~-fD~I~~~~~l~~~~~~~~~~~l~~ 160 (288)
.+..+|-. +..+||-+|....-+...+....+.++ +|++++++-++++..... ||+|+|-.+ ..+..+.+-
T Consensus 81 PGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L-~nv~i~~~RaE~~~~~~~~~D~vtsRAv------a~L~~l~e~ 153 (215)
T COG0357 81 PGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGL-ENVEIVHGRAEEFGQEKKQYDVVTSRAV------ASLNVLLEL 153 (215)
T ss_pred chhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCC-CCeEEehhhHhhcccccccCcEEEeehc------cchHHHHHH
Confidence 99998844 778899999999999999999999999 489999999999884344 999999644 566788888
Q ss_pred HhcccccCcEEEE
Q 048309 161 CESLLAKDGLLVL 173 (288)
Q Consensus 161 ~~~~LkpgG~l~~ 173 (288)
+..++++||.+++
T Consensus 154 ~~pllk~~g~~~~ 166 (215)
T COG0357 154 CLPLLKVGGGFLA 166 (215)
T ss_pred HHHhcccCCcchh
Confidence 9999999998765
|
|
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.9e-08 Score=83.68 Aligned_cols=154 Identities=18% Similarity=0.152 Sum_probs=119.3
Q ss_pred hHHHHHhhhhhcCChHHHHHhhhhhcC-CCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc--cCC
Q 048309 17 QKSYFLRHISRKNSLAQAHRNISYHYD-LDEDEDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ--TGC 93 (288)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~a~~Yd-~~~~~~l~~a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~ 93 (288)
++..--.|..++++.-.+..+....+- ........+.+.+.+..+++..+ ++++||||.=||..+..+|.. .+.
T Consensus 23 ~~~l~~~~~~~e~~~l~el~e~t~~~~~~~~~m~v~~d~g~fl~~li~~~~---ak~~lelGvfTGySaL~~Alalp~dG 99 (237)
T KOG1663|consen 23 QYILETTHYPREPELLKELREATLTYPQPGSEMLVGPDKGQFLQMLIRLLN---AKRTLELGVFTGYSALAVALALPEDG 99 (237)
T ss_pred hhhhhcccccCCcHHHHHHHHHHhhcCCcccceecChHHHHHHHHHHHHhC---CceEEEEecccCHHHHHHHHhcCCCc
Confidence 333333456788887777777665552 22344566777788888888765 569999999999888888776 567
Q ss_pred EEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCC-----C--CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccc
Q 048309 94 NYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQL-----P--KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLA 166 (288)
Q Consensus 94 ~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~-----~--~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~Lk 166 (288)
+|+++|+++...+.+.+..+.+|+..+|++++++..+. . ..++||.++.. |.. .+...++.++.+++|
T Consensus 100 rv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDfaFvD----adK-~nY~~y~e~~l~Llr 174 (237)
T KOG1663|consen 100 RVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDFAFVD----ADK-DNYSNYYERLLRLLR 174 (237)
T ss_pred eEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeEEEEc----cch-HHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999998762 1 46899999974 332 456689999999999
Q ss_pred cCcEEEEEeecC
Q 048309 167 KDGLLVLQFSST 178 (288)
Q Consensus 167 pgG~l~~~~~~~ 178 (288)
+||++++.....
T Consensus 175 ~GGvi~~DNvl~ 186 (237)
T KOG1663|consen 175 VGGVIVVDNVLW 186 (237)
T ss_pred cccEEEEecccc
Confidence 999999965433
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.9e-09 Score=89.71 Aligned_cols=95 Identities=16% Similarity=0.181 Sum_probs=76.9
Q ss_pred CCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CCCCCCEEEEccchh
Q 048309 69 KEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAKKYDRIISCEMME 147 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~~fD~I~~~~~l~ 147 (288)
...++||||.|.|..+..++.. -.+|++.|.|+.|....++ .|. +++ |..++. .+.+||+|.|.+++.
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~-f~~v~aTE~S~~Mr~rL~~----kg~----~vl--~~~~w~~~~~~fDvIscLNvLD 162 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPL-FKEVYATEASPPMRWRLSK----KGF----TVL--DIDDWQQTDFKFDVISCLNVLD 162 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhh-cceEEeecCCHHHHHHHHh----CCC----eEE--ehhhhhccCCceEEEeehhhhh
Confidence 4568999999999999999886 4589999999999655443 343 333 334444 457899999999999
Q ss_pred hhCHhhHHHHHHHHhcccccCcEEEEEee
Q 048309 148 AVGHEYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 148 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
.. ..+..+++.+++.|+|+|++++...
T Consensus 163 Rc--~~P~~LL~~i~~~l~p~G~lilAvV 189 (265)
T PF05219_consen 163 RC--DRPLTLLRDIRRALKPNGRLILAVV 189 (265)
T ss_pred cc--CCHHHHHHHHHHHhCCCCEEEEEEE
Confidence 88 7889999999999999999998653
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.2e-08 Score=88.55 Aligned_cols=86 Identities=16% Similarity=0.226 Sum_probs=70.2
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCC
Q 048309 56 RKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAK 135 (288)
Q Consensus 56 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~ 135 (288)
.....+++.+...++.+|||||||+|.++..+++. ...++++|+++.+++.+++++.. .++++++.+|+.+.+..
T Consensus 16 ~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~-~~~v~~iE~d~~~~~~l~~~~~~---~~~v~v~~~D~~~~~~~- 90 (253)
T TIGR00755 16 SVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKR-AKKVTAIEIDPRLAEILRKLLSL---YERLEVIEGDALKVDLP- 90 (253)
T ss_pred HHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHh-CCcEEEEECCHHHHHHHHHHhCc---CCcEEEEECchhcCChh-
Confidence 45567788888888899999999999999999987 45799999999999999887643 25799999999988732
Q ss_pred CCC---EEEEccch
Q 048309 136 KYD---RIISCEMM 146 (288)
Q Consensus 136 ~fD---~I~~~~~l 146 (288)
++| .|+++..+
T Consensus 91 ~~d~~~~vvsNlPy 104 (253)
T TIGR00755 91 DFPKQLKVVSNLPY 104 (253)
T ss_pred HcCCcceEEEcCCh
Confidence 466 77776543
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.1e-08 Score=91.74 Aligned_cols=107 Identities=21% Similarity=0.274 Sum_probs=82.2
Q ss_pred CCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcC--C-CCceEEEEcccCCCC--CCCCCCEEEE
Q 048309 69 KEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAG--L-QDHIRLYLCDYRQLP--KAKKYDRIIS 142 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g--~-~~~v~~~~~d~~~~~--~~~~fD~I~~ 142 (288)
.+++||.||+|.|..+..++++ ...+|+.||+++++++.|++.+...+ + .++++++.+|...+- ..++||+|++
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~ 182 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG 182 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence 4579999999999999999886 45689999999999999999875321 1 368999999998864 5578999998
Q ss_pred ccchhh--hCHh--hHHHHHH-HHhcccccCcEEEEEe
Q 048309 143 CEMMEA--VGHE--YMEEYFG-CCESLLAKDGLLVLQF 175 (288)
Q Consensus 143 ~~~l~~--~~~~--~~~~~l~-~~~~~LkpgG~l~~~~ 175 (288)
...-.. -+.. --.++++ .+.+.|+|||++++..
T Consensus 183 D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 183 DLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQA 220 (336)
T ss_pred cCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEec
Confidence 742110 0000 1246787 8999999999988754
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.1e-09 Score=94.17 Aligned_cols=105 Identities=17% Similarity=0.189 Sum_probs=83.4
Q ss_pred CCEEEEECCcccH----HHHHHHHc-----cCCEEEEEcCCHHHHHHHHHHH------------------HH-----cC-
Q 048309 70 EHEVLEIGCGWGT----FAIEVVRQ-----TGCNYTGITLSAEQMKYAEMKV------------------NE-----AG- 116 (288)
Q Consensus 70 ~~~vLDiGcG~G~----~~~~la~~-----~~~~v~giD~s~~~~~~a~~~~------------------~~-----~g- 116 (288)
.-+|+..||+||. +++.+.+. ...+|+|+|+|+.+++.|++-. .. .+
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 4699999999995 44444442 1357999999999999998642 00 01
Q ss_pred ------CCCceEEEEcccCCCC--CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 117 ------LQDHIRLYLCDYRQLP--KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 117 ------~~~~v~~~~~d~~~~~--~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
+...|+|.+.|+.+.+ +.+.||+|+|.+++.|++++....+++++.+.|+|||.|++.
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG 261 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAG 261 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 2256789999998754 358999999999999998889999999999999999999884
|
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.4e-08 Score=94.91 Aligned_cols=114 Identities=16% Similarity=0.166 Sum_probs=92.2
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC--CCCCCCEEE
Q 048309 66 RVSKEHEVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP--KAKKYDRII 141 (288)
Q Consensus 66 ~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~--~~~~fD~I~ 141 (288)
++.++.+|||+++|.|+-+.+++.. ....++++|+++..++..++++++.|+ .++.+...|...+. ..+.||.|+
T Consensus 110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~-~nv~v~~~D~~~~~~~~~~~fD~IL 188 (470)
T PRK11933 110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGV-SNVALTHFDGRVFGAALPETFDAIL 188 (470)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEeCchhhhhhhchhhcCeEE
Confidence 6679999999999999999999886 235899999999999999999999999 47999999988765 456899999
Q ss_pred Eccchh------h-------hCHhh-------HHHHHHHHhcccccCcEEEEEeecCCC
Q 048309 142 SCEMME------A-------VGHEY-------MEEYFGCCESLLAKDGLLVLQFSSTPD 180 (288)
Q Consensus 142 ~~~~l~------~-------~~~~~-------~~~~l~~~~~~LkpgG~l~~~~~~~~~ 180 (288)
....+. . .++++ ..+++..+.++|||||+++.++++...
T Consensus 189 vDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~ 247 (470)
T PRK11933 189 LDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNR 247 (470)
T ss_pred EcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCH
Confidence 654332 1 11111 256889999999999999998877443
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.95 E-value=6e-09 Score=98.83 Aligned_cols=127 Identities=17% Similarity=0.169 Sum_probs=99.7
Q ss_pred CCHHHHHHHHHHHHHHHcCC-------CCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 048309 48 EDLKVAQMRKHSLLIEKARV-------SKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQD 119 (288)
Q Consensus 48 ~~l~~a~~~~~~~l~~~~~~-------~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~ 119 (288)
..+.+.|.+.++.....+.+ ..+..+||||||.|.++..+|.. +...++|+|++...+..+.+.+...++ .
T Consensus 319 ~~~~~~q~~~~e~~~p~~~i~~eklf~~~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l-~ 397 (506)
T PRK01544 319 KSLSGVQQNLLDNELPKYLFSKEKLVNEKRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNI-T 397 (506)
T ss_pred CCCCHHHHHHHHhhhhhhCCCHHHhCCCCCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCC-C
Confidence 35666776666555544322 24568999999999999999998 888999999999999999888888888 5
Q ss_pred ceEEEEcccCCCC---CCCCCCEEEEccchhhhCHh------hHHHHHHHHhcccccCcEEEEEe
Q 048309 120 HIRLYLCDYRQLP---KAKKYDRIISCEMMEAVGHE------YMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 120 ~v~~~~~d~~~~~---~~~~fD~I~~~~~l~~~~~~------~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
|+.++..|+..+. +++++|.|+.++.-.|.... --..+++.+.+.|+|||.+.+.+
T Consensus 398 N~~~~~~~~~~~~~~~~~~sv~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~T 462 (506)
T PRK01544 398 NFLLFPNNLDLILNDLPNNSLDGIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFAS 462 (506)
T ss_pred eEEEEcCCHHHHHHhcCcccccEEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEc
Confidence 8999998876443 66889999998876554111 13678999999999999999843
|
|
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=98.95 E-value=2e-09 Score=89.49 Aligned_cols=100 Identities=20% Similarity=0.351 Sum_probs=75.3
Q ss_pred CCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCEEEEccc
Q 048309 67 VSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEM 145 (288)
Q Consensus 67 ~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~~~~~ 145 (288)
..++..|+|+.||.|.++..+|+. .++.|+++|++|.+++..+++++.+++..++.++++|..++...+.+|.|++...
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~~~~drvim~lp 178 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPEGKFDRVIMNLP 178 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---TT-EEEEEE--T
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCccccCEEEECCh
Confidence 457899999999999999999984 4678999999999999999999999999889999999999876789999998643
Q ss_pred hhhhCHhhHHHHHHHHhcccccCcEEE
Q 048309 146 MEAVGHEYMEEYFGCCESLLAKDGLLV 172 (288)
Q Consensus 146 l~~~~~~~~~~~l~~~~~~LkpgG~l~ 172 (288)
- .-..++..+.+++++||.+.
T Consensus 179 ~------~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 179 E------SSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp S------SGGGGHHHHHHHEEEEEEEE
T ss_pred H------HHHHHHHHHHHHhcCCcEEE
Confidence 2 22357777889999998764
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=98.94 E-value=6e-09 Score=91.17 Aligned_cols=109 Identities=21% Similarity=0.201 Sum_probs=81.7
Q ss_pred CCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCC-CceEEEEcccCCCC----CCCCCCEEEEc
Q 048309 69 KEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQ-DHIRLYLCDYRQLP----KAKKYDRIISC 143 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~-~~v~~~~~d~~~~~----~~~~fD~I~~~ 143 (288)
.+++|||+-|=||.++...+.....+|++||.|..+++.++++++.++++ .+++++++|+.++- ..++||+|++.
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlD 202 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIILD 202 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE-
T ss_pred CCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEEC
Confidence 57899999999999999988753348999999999999999999999985 67999999997742 35699999996
Q ss_pred cchhh---h-CHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 144 EMMEA---V-GHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 144 ~~l~~---~-~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
..-.. . -..++..++..+.++|+|||.+++.+.+
T Consensus 203 PPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs 240 (286)
T PF10672_consen 203 PPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCS 240 (286)
T ss_dssp -SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 43110 0 0156788999999999999998876543
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.1e-08 Score=80.84 Aligned_cols=114 Identities=17% Similarity=0.085 Sum_probs=97.9
Q ss_pred HHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC---
Q 048309 58 HSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP--- 132 (288)
Q Consensus 58 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~--- 132 (288)
.+.++...+...|.-|||+|.|||-++..+.++ ....++.+|.|++.+....+... .++++.+|+.++.
T Consensus 37 A~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p------~~~ii~gda~~l~~~l 110 (194)
T COG3963 37 ARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYP------GVNIINGDAFDLRTTL 110 (194)
T ss_pred HHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCC------CccccccchhhHHHHH
Confidence 345667778888999999999999999999887 55689999999999998887763 4679999998764
Q ss_pred ---CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 133 ---KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 133 ---~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
.+..||.|+|.-.+--++.....++++++...|.+||.++-.+.+
T Consensus 111 ~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 111 GEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred hhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 567899999998888888788899999999999999999987766
|
|
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=98.93 E-value=4.2e-09 Score=86.71 Aligned_cols=109 Identities=23% Similarity=0.337 Sum_probs=83.8
Q ss_pred CCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-----CCCCCCEEEE
Q 048309 68 SKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-----KAKKYDRIIS 142 (288)
Q Consensus 68 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-----~~~~fD~I~~ 142 (288)
-++.+|||+-||+|.++...+++...+|+.||.++..++..+++++..+...+++++.+|....- ...+||+|++
T Consensus 41 ~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIfl 120 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFL 120 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE
T ss_pred cCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEE
Confidence 36889999999999999999888556999999999999999999999988767999999975432 4689999999
Q ss_pred ccchhhhCHhhHHHHHHHHh--cccccCcEEEEEeecC
Q 048309 143 CEMMEAVGHEYMEEYFGCCE--SLLAKDGLLVLQFSST 178 (288)
Q Consensus 143 ~~~l~~~~~~~~~~~l~~~~--~~LkpgG~l~~~~~~~ 178 (288)
......- ......++.+. .+|+++|.+++.....
T Consensus 121 DPPY~~~--~~~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 121 DPPYAKG--LYYEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp --STTSC--HHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred CCCcccc--hHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 8776643 22466777776 8999999999987554
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.3e-08 Score=82.18 Aligned_cols=128 Identities=15% Similarity=0.196 Sum_probs=94.0
Q ss_pred hhhhhcCCCCCCCHHHHHHHHHHHHHHHcC----CCCCC-EEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHH
Q 048309 37 NISYHYDLDEDEDLKVAQMRKHSLLIEKAR----VSKEH-EVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEM 110 (288)
Q Consensus 37 ~~a~~Yd~~~~~~l~~a~~~~~~~l~~~~~----~~~~~-~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~ 110 (288)
.+...++.....+.++. ...++++.+. +.... +++|||+|.|-.++.++-. +..+++.+|.+..-+...+.
T Consensus 14 ~~N~~~NLt~~~~~~~~---~~~Hi~DSL~~~~~~~~~~~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~ 90 (184)
T PF02527_consen 14 EWNKKINLTSIRDPEEI---WERHILDSLALLPFLPDFGKKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKE 90 (184)
T ss_dssp HHHHCSSS-S--SHHHH---HHHHHHHHHGGGGCS-CCCSEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHH
T ss_pred HhCceeeeccCCCHHHH---HHHHHHHHHHhhhhhccCCceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHH
Confidence 34445555533333332 2334555442 22233 8999999999999998776 78899999999999999999
Q ss_pred HHHHcCCCCceEEEEcccCCCCCCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 111 KVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 111 ~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
.....|+ +|++++++.+++.....+||+|++-.+ ..+..+++-+...|++||.+++.
T Consensus 91 ~~~~L~L-~nv~v~~~R~E~~~~~~~fd~v~aRAv------~~l~~l~~~~~~~l~~~G~~l~~ 147 (184)
T PF02527_consen 91 VVRELGL-SNVEVINGRAEEPEYRESFDVVTARAV------APLDKLLELARPLLKPGGRLLAY 147 (184)
T ss_dssp HHHHHT--SSEEEEES-HHHTTTTT-EEEEEEESS------SSHHHHHHHHGGGEEEEEEEEEE
T ss_pred HHHHhCC-CCEEEEEeeecccccCCCccEEEeehh------cCHHHHHHHHHHhcCCCCEEEEE
Confidence 9999999 489999999999336689999999754 45678889999999999999984
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=98.91 E-value=4.4e-09 Score=86.60 Aligned_cols=99 Identities=18% Similarity=0.311 Sum_probs=66.9
Q ss_pred HHHHHHHcCCCC-CCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CCC
Q 048309 58 HSLLIEKARVSK-EHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAK 135 (288)
Q Consensus 58 ~~~l~~~~~~~~-~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~ 135 (288)
++.+++.+...+ +..|.|+|||.+.++..+.. +..|...|+.+ .+-.+..+|+...| +++
T Consensus 60 vd~iI~~l~~~~~~~viaD~GCGdA~la~~~~~--~~~V~SfDLva----------------~n~~Vtacdia~vPL~~~ 121 (219)
T PF05148_consen 60 VDVIIEWLKKRPKSLVIADFGCGDAKLAKAVPN--KHKVHSFDLVA----------------PNPRVTACDIANVPLEDE 121 (219)
T ss_dssp HHHHHHHHCTS-TTS-EEEES-TT-HHHHH--S-----EEEEESS-----------------SSTTEEES-TTS-S--TT
T ss_pred HHHHHHHHHhcCCCEEEEECCCchHHHHHhccc--CceEEEeeccC----------------CCCCEEEecCccCcCCCC
Confidence 356677766444 46899999999999866542 46799999865 23468889999999 889
Q ss_pred CCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 136 KYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 136 ~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
+.|+++++.++-. .+...++.++.|+|||||.+.|.+..
T Consensus 122 svDv~VfcLSLMG---Tn~~~fi~EA~RvLK~~G~L~IAEV~ 160 (219)
T PF05148_consen 122 SVDVAVFCLSLMG---TNWPDFIREANRVLKPGGILKIAEVK 160 (219)
T ss_dssp -EEEEEEES---S---S-HHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred ceeEEEEEhhhhC---CCcHHHHHHHHheeccCcEEEEEEec
Confidence 9999999877655 58899999999999999999997765
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.91 E-value=1e-08 Score=86.44 Aligned_cols=96 Identities=20% Similarity=0.378 Sum_probs=76.8
Q ss_pred HHHHHHcCCCCC-CEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CCCC
Q 048309 59 SLLIEKARVSKE-HEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAKK 136 (288)
Q Consensus 59 ~~l~~~~~~~~~-~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~~ 136 (288)
+.+++.+...++ ..|.|+|||-+.++. .....|+.+|+.+ .+-+++.+|+.+.| .+++
T Consensus 169 d~ii~~ik~r~~~~vIaD~GCGEakiA~----~~~~kV~SfDL~a----------------~~~~V~~cDm~~vPl~d~s 228 (325)
T KOG3045|consen 169 DVIIRKIKRRPKNIVIADFGCGEAKIAS----SERHKVHSFDLVA----------------VNERVIACDMRNVPLEDES 228 (325)
T ss_pred HHHHHHHHhCcCceEEEecccchhhhhh----ccccceeeeeeec----------------CCCceeeccccCCcCccCc
Confidence 556666654444 578899999988765 2346899999855 25688999999999 8899
Q ss_pred CCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 137 YDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 137 fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
.|+++++.++-- .++..++.++.|+|++||.+.|..+.
T Consensus 229 vDvaV~CLSLMg---tn~~df~kEa~RiLk~gG~l~IAEv~ 266 (325)
T KOG3045|consen 229 VDVAVFCLSLMG---TNLADFIKEANRILKPGGLLYIAEVK 266 (325)
T ss_pred ccEEEeeHhhhc---ccHHHHHHHHHHHhccCceEEEEehh
Confidence 999998866544 68899999999999999999997654
|
|
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.7e-08 Score=88.30 Aligned_cols=117 Identities=23% Similarity=0.299 Sum_probs=90.6
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcC--C-CCceEEEEcccCCC
Q 048309 56 RKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAG--L-QDHIRLYLCDYRQL 131 (288)
Q Consensus 56 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g--~-~~~v~~~~~d~~~~ 131 (288)
..+.++.-.....+ ++||-||.|.|..++.+.++ .-.+++.||++++.++.|++.+.... . .++++++.+|..++
T Consensus 64 Eml~h~~~~ah~~p-k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~ 142 (282)
T COG0421 64 EMLAHVPLLAHPNP-KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEF 142 (282)
T ss_pred HHHHhchhhhCCCC-CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHH
Confidence 33333333334444 69999999999999999998 45799999999999999999886443 2 37899999999886
Q ss_pred C--CCCCCCEEEEccchhhhCHh---hHHHHHHHHhcccccCcEEEEE
Q 048309 132 P--KAKKYDRIISCEMMEAVGHE---YMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 132 ~--~~~~fD~I~~~~~l~~~~~~---~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
- ...+||+|++..+-. .++. .-..+++.|.+.|+++|+++..
T Consensus 143 v~~~~~~fDvIi~D~tdp-~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 143 LRDCEEKFDVIIVDSTDP-VGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred HHhCCCcCCEEEEcCCCC-CCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 5 345899999976543 2211 1378999999999999999987
|
|
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.2e-08 Score=86.77 Aligned_cols=106 Identities=16% Similarity=0.216 Sum_probs=84.7
Q ss_pred CCCEEEEECCcccH----HHHHHHHc-c-----CCEEEEEcCCHHHHHHHHHHHHH-----cCCC---------------
Q 048309 69 KEHEVLEIGCGWGT----FAIEVVRQ-T-----GCNYTGITLSAEQMKYAEMKVNE-----AGLQ--------------- 118 (288)
Q Consensus 69 ~~~~vLDiGcG~G~----~~~~la~~-~-----~~~v~giD~s~~~~~~a~~~~~~-----~g~~--------------- 118 (288)
..-+|+-.||+||. +++.+.+. + ..+|+|.|+|..+++.|+.-.-. .+++
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 36799999999995 45555544 2 46899999999999999853211 1221
Q ss_pred --------CceEEEEcccCCCC-CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 119 --------DHIRLYLCDYRQLP-KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 119 --------~~v~~~~~d~~~~~-~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
..|.|...|+.+-+ ..+.||+|+|-+++-++..+....++++.+..|+|||+|++.
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG 240 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLG 240 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEc
Confidence 45778888887766 678899999999999998888999999999999999999993
|
|
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.1e-08 Score=83.83 Aligned_cols=111 Identities=22% Similarity=0.272 Sum_probs=84.7
Q ss_pred HHHHHHHHcC--CCCCCEEEEECCcccHHHHHHHHc---cCCEEEEEcCCHHHHHHHHHHHHHcC--------C-CCceE
Q 048309 57 KHSLLIEKAR--VSKEHEVLEIGCGWGTFAIEVVRQ---TGCNYTGITLSAEQMKYAEMKVNEAG--------L-QDHIR 122 (288)
Q Consensus 57 ~~~~l~~~~~--~~~~~~vLDiGcG~G~~~~~la~~---~~~~v~giD~s~~~~~~a~~~~~~~g--------~-~~~v~ 122 (288)
....+++.+. +.||.++||+|+|+|+++.-++.- .+..++|||.-++.++.++++++..- + ..++.
T Consensus 68 mha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ 147 (237)
T KOG1661|consen 68 MHATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELS 147 (237)
T ss_pred HHHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceE
Confidence 3345566665 679999999999999998887753 45456999999999999999886532 1 14678
Q ss_pred EEEcccCCCC-CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 123 LYLCDYRQLP-KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 123 ~~~~d~~~~~-~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
++++|..... ...+||.|.+.... .+..+++...|++||.+++-.
T Consensus 148 ivvGDgr~g~~e~a~YDaIhvGAaa--------~~~pq~l~dqL~~gGrllip~ 193 (237)
T KOG1661|consen 148 IVVGDGRKGYAEQAPYDAIHVGAAA--------SELPQELLDQLKPGGRLLIPV 193 (237)
T ss_pred EEeCCccccCCccCCcceEEEccCc--------cccHHHHHHhhccCCeEEEee
Confidence 9999998866 67899999997433 334445568899999999843
|
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.4e-08 Score=92.87 Aligned_cols=98 Identities=14% Similarity=0.179 Sum_probs=81.2
Q ss_pred CCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCC-CCCCCEEEEccchh
Q 048309 70 EHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPK-AKKYDRIISCEMME 147 (288)
Q Consensus 70 ~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~-~~~fD~I~~~~~l~ 147 (288)
+.+|||++||+|..++.++.. ...+|+++|+++.+++.++++++.+++. ++++.++|+..+.. .+.||+|++...
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~-~~~v~~~Da~~~l~~~~~fD~V~lDP~-- 134 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLE-NEKVFNKDANALLHEERKFDVVDIDPF-- 134 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-ceEEEhhhHHHHHhhcCCCCEEEECCC--
Confidence 468999999999999999876 3348999999999999999999999884 67899999976542 467999998742
Q ss_pred hhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 148 AVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 148 ~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
.....++..+.+.+++||.++++
T Consensus 135 ----Gs~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 135 ----GSPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred ----CCcHHHHHHHHHHhcCCCEEEEE
Confidence 22356777767888999999996
|
|
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=98.84 E-value=4e-08 Score=89.26 Aligned_cols=112 Identities=11% Similarity=0.195 Sum_probs=81.7
Q ss_pred HHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCC-
Q 048309 55 MRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPK- 133 (288)
Q Consensus 55 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~- 133 (288)
...+..+++.+...+ .+|||++||+|.++..+++. ..+|+|+|+++++++.++++++.+++. +++++.+|+.++..
T Consensus 184 ~~l~~~v~~~~~~~~-~~vlDl~~G~G~~sl~la~~-~~~v~~vE~~~~av~~a~~n~~~~~~~-~v~~~~~d~~~~~~~ 260 (353)
T TIGR02143 184 IKMLEWACEVTQGSK-GDLLELYCGNGNFSLALAQN-FRRVLATEIAKPSVNAAQYNIAANNID-NVQIIRMSAEEFTQA 260 (353)
T ss_pred HHHHHHHHHHhhcCC-CcEEEEeccccHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEEcCHHHHHHH
Confidence 344455666655333 47999999999999999886 459999999999999999999999984 79999999976431
Q ss_pred ----------C------CCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEee
Q 048309 134 ----------A------KKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 134 ----------~------~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
. ..||+|+....=.- ....+++.+.+ |++.+++++.
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~d~v~lDPPR~G----~~~~~l~~l~~---~~~ivYvsC~ 312 (353)
T TIGR02143 261 MNGVREFRRLKGIDLKSYNCSTIFVDPPRAG----LDPDTCKLVQA---YERILYISCN 312 (353)
T ss_pred HhhccccccccccccccCCCCEEEECCCCCC----CcHHHHHHHHc---CCcEEEEEcC
Confidence 1 13899998765221 12344444433 7888888653
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.84 E-value=7.2e-09 Score=85.87 Aligned_cols=103 Identities=17% Similarity=0.229 Sum_probs=88.1
Q ss_pred CCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CCCCCCEEEEccchhh
Q 048309 70 EHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAKKYDRIISCEMMEA 148 (288)
Q Consensus 70 ~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~~fD~I~~~~~l~~ 148 (288)
-..++|||||.|.+...+....-.+++-+|.|..|++.|+.. +..++ .+...++|-+.++ .++++|+|++..++|+
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~-qdp~i--~~~~~v~DEE~Ldf~ens~DLiisSlslHW 149 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDA-QDPSI--ETSYFVGDEEFLDFKENSVDLIISSLSLHW 149 (325)
T ss_pred CcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhcc-CCCce--EEEEEecchhcccccccchhhhhhhhhhhh
Confidence 457999999999999999887445899999999999988764 33444 4678889999888 7899999999999999
Q ss_pred hCHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 149 VGHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 149 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
+ .+++..+.+|...|||+|.|+.+-++
T Consensus 150 ~--NdLPg~m~~ck~~lKPDg~Fiasmlg 176 (325)
T KOG2940|consen 150 T--NDLPGSMIQCKLALKPDGLFIASMLG 176 (325)
T ss_pred h--ccCchHHHHHHHhcCCCccchhHHhc
Confidence 9 88999999999999999999875544
|
|
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.84 E-value=5.1e-08 Score=88.90 Aligned_cols=111 Identities=14% Similarity=0.276 Sum_probs=81.6
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC--C
Q 048309 56 RKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP--K 133 (288)
Q Consensus 56 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~--~ 133 (288)
..+..+.+.+... +.+|||++||+|.++..+++. ..+|+|+|.++.+++.+++++..+++ .+++++.+|+.++. .
T Consensus 194 ~l~~~v~~~~~~~-~~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~a~~N~~~~~~-~~v~~~~~d~~~~l~~~ 270 (362)
T PRK05031 194 KMLEWALDATKGS-KGDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAAAQYNIAANGI-DNVQIIRMSAEEFTQAM 270 (362)
T ss_pred HHHHHHHHHhhcC-CCeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHHhCC-CcEEEEECCHHHHHHHH
Confidence 3445555555432 357999999999999999886 45899999999999999999999998 48999999997632 1
Q ss_pred ---------------CCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEee
Q 048309 134 ---------------AKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 134 ---------------~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
..+||+|+....-.-+ ....++.+.+ |++.+++++.
T Consensus 271 ~~~~~~~~~~~~~~~~~~~D~v~lDPPR~G~----~~~~l~~l~~---~~~ivyvSC~ 321 (362)
T PRK05031 271 NGVREFNRLKGIDLKSYNFSTIFVDPPRAGL----DDETLKLVQA---YERILYISCN 321 (362)
T ss_pred hhcccccccccccccCCCCCEEEECCCCCCC----cHHHHHHHHc---cCCEEEEEeC
Confidence 1258999998663222 2444444443 6888887653
|
|
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=98.83 E-value=3.4e-08 Score=82.59 Aligned_cols=122 Identities=15% Similarity=0.167 Sum_probs=78.7
Q ss_pred CHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCE-EEEEcCCHHHHHHHHHHHH-------HcCC-CC
Q 048309 49 DLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCN-YTGITLSAEQMKYAEMKVN-------EAGL-QD 119 (288)
Q Consensus 49 ~l~~a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~-v~giD~s~~~~~~a~~~~~-------~~g~-~~ 119 (288)
...+-....+..+++.+++.++..++|||||.|....+.|...+++ .+|||+.+...+.|+...+ ..|. ..
T Consensus 22 ~YGEi~~~~~~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~ 101 (205)
T PF08123_consen 22 TYGEISPEFVSKILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPG 101 (205)
T ss_dssp CGGGCHHHHHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---
T ss_pred ceeecCHHHHHHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 3334444667778889999999999999999999988887765554 9999999999887775433 2232 35
Q ss_pred ceEEEEcccCCCC----CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEE
Q 048309 120 HIRLYLCDYRQLP----KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVL 173 (288)
Q Consensus 120 ~v~~~~~d~~~~~----~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~ 173 (288)
++++..+|+.+.+ .-...|+|++++.+- + ++....+.+....||+|.+++.
T Consensus 102 ~v~l~~gdfl~~~~~~~~~s~AdvVf~Nn~~F--~-~~l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 102 KVELIHGDFLDPDFVKDIWSDADVVFVNNTCF--D-PDLNLALAELLLELKPGARIIS 156 (205)
T ss_dssp EEEEECS-TTTHHHHHHHGHC-SEEEE--TTT----HHHHHHHHHHHTTS-TT-EEEE
T ss_pred cceeeccCccccHhHhhhhcCCCEEEEecccc--C-HHHHHHHHHHHhcCCCCCEEEE
Confidence 6888999987754 125689999987653 2 4556666777788999988765
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.5e-07 Score=81.25 Aligned_cols=106 Identities=15% Similarity=0.182 Sum_probs=91.2
Q ss_pred CCCEEEEECCcccHHHHHHHHc-cC--CEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC----CCCCCCEEE
Q 048309 69 KEHEVLEIGCGWGTFAIEVVRQ-TG--CNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP----KAKKYDRII 141 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~~la~~-~~--~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~----~~~~fD~I~ 141 (288)
.+-+||||.||.|......... +. .+|...|.|+..++..++.+++.|+.+-++|.++|+.+.. ..-..++++
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~i 214 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLAI 214 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEEE
Confidence 5569999999999998887766 43 6899999999999999999999999766699999998754 345689999
Q ss_pred EccchhhhCHhh-HHHHHHHHhcccccCcEEEEE
Q 048309 142 SCEMMEAVGHEY-MEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 142 ~~~~l~~~~~~~-~~~~l~~~~~~LkpgG~l~~~ 174 (288)
.++.++.+++.+ ....++.+.+.+.|||+++..
T Consensus 215 VsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyT 248 (311)
T PF12147_consen 215 VSGLYELFPDNDLVRRSLAGLARALEPGGYLIYT 248 (311)
T ss_pred EecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEc
Confidence 999999997655 566799999999999999974
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=9.2e-08 Score=73.98 Aligned_cols=102 Identities=15% Similarity=0.158 Sum_probs=74.4
Q ss_pred HHHHcCCCCCCEEEEECCcccH-HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC--CCCCC
Q 048309 61 LIEKARVSKEHEVLEIGCGWGT-FAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP--KAKKY 137 (288)
Q Consensus 61 l~~~~~~~~~~~vLDiGcG~G~-~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~--~~~~f 137 (288)
+.+.+....+.+++|||||+|. ++..|++. +.+|+++|+++..++.+++. .++++.+|+.+.. .-+.+
T Consensus 8 l~~~~~~~~~~kileIG~GfG~~vA~~L~~~-G~~ViaIDi~~~aV~~a~~~--------~~~~v~dDlf~p~~~~y~~a 78 (134)
T PRK04148 8 IAENYEKGKNKKIVELGIGFYFKVAKKLKES-GFDVIVIDINEKAVEKAKKL--------GLNAFVDDLFNPNLEIYKNA 78 (134)
T ss_pred HHHhcccccCCEEEEEEecCCHHHHHHHHHC-CCEEEEEECCHHHHHHHHHh--------CCeEEECcCCCCCHHHHhcC
Confidence 4455544566899999999996 88888875 88999999999998888665 3689999999876 45789
Q ss_pred CEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecC
Q 048309 138 DRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSST 178 (288)
Q Consensus 138 D~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 178 (288)
|+|++.-. +.++...+.++.+.+ |.-+++...+.
T Consensus 79 ~liysirp-----p~el~~~~~~la~~~--~~~~~i~~l~~ 112 (134)
T PRK04148 79 KLIYSIRP-----PRDLQPFILELAKKI--NVPLIIKPLSG 112 (134)
T ss_pred CEEEEeCC-----CHHHHHHHHHHHHHc--CCCEEEEcCCC
Confidence 99998643 244445554554433 56677755543
|
|
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.4e-08 Score=86.13 Aligned_cols=122 Identities=24% Similarity=0.243 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHcc-CCEEEEEcCCHHHHHHHHHHHHHcCC---CCceEEEEccc
Q 048309 53 AQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQT-GCNYTGITLSAEQMKYAEMKVNEAGL---QDHIRLYLCDY 128 (288)
Q Consensus 53 a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~giD~s~~~~~~a~~~~~~~g~---~~~v~~~~~d~ 128 (288)
.+.+.+.++.-.... .+++||-||.|.|..+..+.+++ ..++++||+++.+++.|++.+..... .++++++.+|.
T Consensus 61 ~y~e~l~h~~~~~~~-~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg 139 (246)
T PF01564_consen 61 IYHEMLVHPPLLLHP-NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDG 139 (246)
T ss_dssp HHHHHHHHHHHHHSS-ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTH
T ss_pred HHHHHHhhhHhhcCC-CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhh
Confidence 344455444444433 57799999999999999999873 56999999999999999998764321 35899999999
Q ss_pred CCCC--CCC-CCCEEEEccchhhhCHh--hHHHHHHHHhcccccCcEEEEEe
Q 048309 129 RQLP--KAK-KYDRIISCEMMEAVGHE--YMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 129 ~~~~--~~~-~fD~I~~~~~l~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
..+- ..+ +||+|+....-...+.. --.++++.+.+.|+|||++++..
T Consensus 140 ~~~l~~~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 140 RKFLKETQEEKYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp HHHHHTSSST-EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHhccCCcccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 8754 334 89999986543222111 13689999999999999999866
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.78 E-value=7.2e-08 Score=89.31 Aligned_cols=118 Identities=15% Similarity=0.249 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCC
Q 048309 52 VAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQL 131 (288)
Q Consensus 52 ~a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~ 131 (288)
......+..+++.+...++.++||+=||.|.++..+|++ ..+|+|+|+++++++.|+++++.+++. |++|..++.+++
T Consensus 276 ~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~-~~~V~gvEi~~~aV~~A~~NA~~n~i~-N~~f~~~~ae~~ 353 (432)
T COG2265 276 AVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKR-VKKVHGVEISPEAVEAAQENAAANGID-NVEFIAGDAEEF 353 (432)
T ss_pred HHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhccc-CCEEEEEecCHHHHHHHHHHHHHcCCC-cEEEEeCCHHHH
Confidence 344556677888888888899999999999999999975 679999999999999999999999995 699999999997
Q ss_pred C-C---CCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEee
Q 048309 132 P-K---AKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 132 ~-~---~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
. . ...+|+|+....=.-+. ..+++.+ ..++|-..+++++.
T Consensus 354 ~~~~~~~~~~d~VvvDPPR~G~~----~~~lk~l-~~~~p~~IvYVSCN 397 (432)
T COG2265 354 TPAWWEGYKPDVVVVDPPRAGAD----REVLKQL-AKLKPKRIVYVSCN 397 (432)
T ss_pred hhhccccCCCCEEEECCCCCCCC----HHHHHHH-HhcCCCcEEEEeCC
Confidence 6 2 35889999875433331 2333333 55678888888654
|
|
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.5e-08 Score=86.93 Aligned_cols=130 Identities=15% Similarity=0.205 Sum_probs=98.8
Q ss_pred HHHHHhhhhhcCCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHH
Q 048309 32 AQAHRNISYHYDLDEDEDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMK 111 (288)
Q Consensus 32 ~~~~~~~a~~Yd~~~~~~l~~a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~ 111 (288)
-..|+.++.|........+ .+...+++... .+..++|+|||.|..... .+.+.++|.|++...+..+++.
T Consensus 15 h~IYd~ia~~fs~tr~~~W-----p~v~qfl~~~~--~gsv~~d~gCGngky~~~---~p~~~~ig~D~c~~l~~~ak~~ 84 (293)
T KOG1331|consen 15 HSIYDKIATHFSATRAAPW-----PMVRQFLDSQP--TGSVGLDVGCGNGKYLGV---NPLCLIIGCDLCTGLLGGAKRS 84 (293)
T ss_pred HHHHHHhhhhccccccCcc-----HHHHHHHhccC--CcceeeecccCCcccCcC---CCcceeeecchhhhhccccccC
Confidence 4478888877665422222 23344444443 478999999999976432 2678899999999988877653
Q ss_pred HHHcCCCCce-EEEEcccCCCC-CCCCCCEEEEccchhhh-CHhhHHHHHHHHhcccccCcEEEEEeecCC
Q 048309 112 VNEAGLQDHI-RLYLCDYRQLP-KAKKYDRIISCEMMEAV-GHEYMEEYFGCCESLLAKDGLLVLQFSSTP 179 (288)
Q Consensus 112 ~~~~g~~~~v-~~~~~d~~~~~-~~~~fD~I~~~~~l~~~-~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 179 (288)
+. ....+|+..++ ...+||.+++..++||+ +......+++++.+.|+|||...+..+...
T Consensus 85 --------~~~~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa~~ 147 (293)
T KOG1331|consen 85 --------GGDNVCRADALKLPFREESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALVYVWALE 147 (293)
T ss_pred --------CCceeehhhhhcCCCCCCccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEehhh
Confidence 23 68899999999 78999999999999999 445678899999999999999888776643
|
|
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.3e-07 Score=75.60 Aligned_cols=117 Identities=14% Similarity=0.114 Sum_probs=90.4
Q ss_pred HHHHHcCC--CCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC--CC-
Q 048309 60 LLIEKARV--SKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP--KA- 134 (288)
Q Consensus 60 ~l~~~~~~--~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~--~~- 134 (288)
.+...+.. -.|.++||+-+|+|.++...+++....++.||.+...+...+++++..++..+++++..|..... ..
T Consensus 32 alFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~ 111 (187)
T COG0742 32 ALFNILAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGT 111 (187)
T ss_pred HHHHhccccccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCC
Confidence 34444443 47899999999999999999998667999999999999999999999997788999999998542 22
Q ss_pred -CCCCEEEEccchhhhCHhhHHHHHH--HHhcccccCcEEEEEeec
Q 048309 135 -KKYDRIISCEMMEAVGHEYMEEYFG--CCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 135 -~~fD~I~~~~~l~~~~~~~~~~~l~--~~~~~LkpgG~l~~~~~~ 177 (288)
+.||+|+....++.= --+....+. .-..+|+|+|.+++..-.
T Consensus 112 ~~~FDlVflDPPy~~~-l~~~~~~~~~~~~~~~L~~~~~iv~E~~~ 156 (187)
T COG0742 112 REPFDLVFLDPPYAKG-LLDKELALLLLEENGWLKPGALIVVEHDK 156 (187)
T ss_pred CCcccEEEeCCCCccc-hhhHHHHHHHHHhcCCcCCCcEEEEEeCC
Confidence 359999999887621 111122222 246889999999997654
|
|
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.76 E-value=6.4e-08 Score=83.09 Aligned_cols=87 Identities=16% Similarity=0.223 Sum_probs=74.9
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCC
Q 048309 56 RKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAK 135 (288)
Q Consensus 56 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~ 135 (288)
..++.+++.+++.++..|||||+|.|.++..|++. +.+|+++|+++.+++..++.... ..|++++.+|+...+.+.
T Consensus 17 ~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~-~~~v~aiEiD~~l~~~L~~~~~~---~~n~~vi~~DaLk~d~~~ 92 (259)
T COG0030 17 NVIDKIVEAANISPGDNVLEIGPGLGALTEPLLER-AARVTAIEIDRRLAEVLKERFAP---YDNLTVINGDALKFDFPS 92 (259)
T ss_pred HHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhh-cCeEEEEEeCHHHHHHHHHhccc---ccceEEEeCchhcCcchh
Confidence 34778899999888999999999999999999997 77899999999999999988752 268999999999988444
Q ss_pred --CCCEEEEccch
Q 048309 136 --KYDRIISCEMM 146 (288)
Q Consensus 136 --~fD~I~~~~~l 146 (288)
.++.|+++-..
T Consensus 93 l~~~~~vVaNlPY 105 (259)
T COG0030 93 LAQPYKVVANLPY 105 (259)
T ss_pred hcCCCEEEEcCCC
Confidence 78999987543
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.75 E-value=9e-08 Score=81.33 Aligned_cols=102 Identities=17% Similarity=0.189 Sum_probs=66.4
Q ss_pred HHHHHHHHHHcCC-CCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCce-EEEEcccCCCC
Q 048309 55 MRKHSLLIEKARV-SKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHI-RLYLCDYRQLP 132 (288)
Q Consensus 55 ~~~~~~l~~~~~~-~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v-~~~~~d~~~~~ 132 (288)
..++..+++...+ .++.+|||+|||+|.++..+++....+|+|+|+++.|+... .... .++ .+...|+....
T Consensus 60 ~~kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~---l~~~---~~v~~~~~~ni~~~~ 133 (228)
T TIGR00478 60 GEKLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEK---LRQD---ERVKVLERTNIRYVT 133 (228)
T ss_pred HHHHHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHH---HhcC---CCeeEeecCCcccCC
Confidence 3455677777664 46789999999999999999987446899999999887651 1111 122 23333444322
Q ss_pred ------CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEE
Q 048309 133 ------KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVL 173 (288)
Q Consensus 133 ------~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~ 173 (288)
.-..+|++++.. ...+..+.+.|+| |.+++
T Consensus 134 ~~~~~~d~~~~DvsfiS~----------~~~l~~i~~~l~~-~~~~~ 169 (228)
T TIGR00478 134 PADIFPDFATFDVSFISL----------ISILPELDLLLNP-NDLTL 169 (228)
T ss_pred HhHcCCCceeeeEEEeeh----------HhHHHHHHHHhCc-CeEEE
Confidence 112455555432 2346777888999 77665
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.9e-08 Score=76.56 Aligned_cols=90 Identities=17% Similarity=0.279 Sum_probs=72.6
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CCC
Q 048309 57 KHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAK 135 (288)
Q Consensus 57 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~ 135 (288)
++.-+-...+--.|+.++|+|||.|.++...+.-....|+|+|++|++++++++++++..+ ++.++++|+.++. ..+
T Consensus 36 M~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEv--qidlLqcdildle~~~g 113 (185)
T KOG3420|consen 36 MLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEV--QIDLLQCDILDLELKGG 113 (185)
T ss_pred HHHHHHhhhccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhh--hhheeeeeccchhccCC
Confidence 3334444455457889999999999999666554445799999999999999999998876 5799999999987 568
Q ss_pred CCCEEEEccchhh
Q 048309 136 KYDRIISCEMMEA 148 (288)
Q Consensus 136 ~fD~I~~~~~l~~ 148 (288)
.||.++.+..+..
T Consensus 114 ~fDtaviNppFGT 126 (185)
T KOG3420|consen 114 IFDTAVINPPFGT 126 (185)
T ss_pred eEeeEEecCCCCc
Confidence 8999999877653
|
|
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=4e-08 Score=86.42 Aligned_cols=87 Identities=11% Similarity=0.118 Sum_probs=73.7
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHcc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC--
Q 048309 57 KHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQT--GCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-- 132 (288)
Q Consensus 57 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-- 132 (288)
.+..+++.+.+.++..++|.+||.|+.+..+++.. ..+|+|+|.++.+++.+++++.. .++++++++|+.++.
T Consensus 7 ll~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~---~~ri~~i~~~f~~l~~~ 83 (296)
T PRK00050 7 LLDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP---FGRFTLVHGNFSNLKEV 83 (296)
T ss_pred cHHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc---CCcEEEEeCCHHHHHHH
Confidence 46778888888889999999999999999999873 47999999999999999988765 258999999999875
Q ss_pred CCC---CCCEEEEccch
Q 048309 133 KAK---KYDRIISCEMM 146 (288)
Q Consensus 133 ~~~---~fD~I~~~~~l 146 (288)
... ++|.|++...+
T Consensus 84 l~~~~~~vDgIl~DLGv 100 (296)
T PRK00050 84 LAEGLGKVDGILLDLGV 100 (296)
T ss_pred HHcCCCccCEEEECCCc
Confidence 222 79999987544
|
|
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.73 E-value=7.1e-08 Score=82.03 Aligned_cols=89 Identities=17% Similarity=0.279 Sum_probs=77.2
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCC
Q 048309 56 RKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAK 135 (288)
Q Consensus 56 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~ 135 (288)
..++.+++..+++++..|||+|.|||.++..+.+. +.+|+++|+++.|+....++.+......+.+++.+|+...+. .
T Consensus 45 ~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~-~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~-P 122 (315)
T KOG0820|consen 45 LVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEA-GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDL-P 122 (315)
T ss_pred HHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHh-cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCC-c
Confidence 35578889999999999999999999999999996 889999999999999999998766666889999999998772 3
Q ss_pred CCCEEEEccch
Q 048309 136 KYDRIISCEMM 146 (288)
Q Consensus 136 ~fD~I~~~~~l 146 (288)
.||.++++-..
T Consensus 123 ~fd~cVsNlPy 133 (315)
T KOG0820|consen 123 RFDGCVSNLPY 133 (315)
T ss_pred ccceeeccCCc
Confidence 79999986433
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.72 E-value=9.6e-09 Score=85.41 Aligned_cols=112 Identities=22% Similarity=0.335 Sum_probs=85.9
Q ss_pred HHcCCCCCCEEEEECCcccHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCC-CCceEEEEcccCCCC---CCCCC
Q 048309 63 EKARVSKEHEVLEIGCGWGTFAIEVVRQTGC-NYTGITLSAEQMKYAEMKVNEAGL-QDHIRLYLCDYRQLP---KAKKY 137 (288)
Q Consensus 63 ~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~-~v~giD~s~~~~~~a~~~~~~~g~-~~~v~~~~~d~~~~~---~~~~f 137 (288)
.....+.|.+|||...|-|+.++..+++ |+ +|..++.+|..++.|+-+-=..++ ..+++++.+|+.+.- .+.+|
T Consensus 128 ~~V~~~~G~rVLDtC~GLGYtAi~a~~r-GA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sf 206 (287)
T COG2521 128 ELVKVKRGERVLDTCTGLGYTAIEALER-GAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESF 206 (287)
T ss_pred heeccccCCEeeeeccCccHHHHHHHHc-CCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCcccc
Confidence 3345667999999999999999999987 55 999999999999888755322222 235899999998754 67889
Q ss_pred CEEEEccc-hhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 138 DRIISCEM-MEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 138 D~I~~~~~-l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
|+|+-... +.+.+.---.++.++++++|||||.++--+
T Consensus 207 DaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYv 245 (287)
T COG2521 207 DAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYV 245 (287)
T ss_pred ceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEe
Confidence 99997643 333332345789999999999999988533
|
|
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.3e-07 Score=84.47 Aligned_cols=113 Identities=19% Similarity=0.274 Sum_probs=93.3
Q ss_pred HHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCC-CCCC
Q 048309 60 LLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKA-KKYD 138 (288)
Q Consensus 60 ~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~-~~fD 138 (288)
++++... +|.+|+|+-+|.|.+++.+|+....+|+++|++|.+++..+++++.+++...+..+++|.....+. +.+|
T Consensus 181 Rva~~v~--~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aD 258 (341)
T COG2520 181 RVAELVK--EGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVAD 258 (341)
T ss_pred HHHhhhc--CCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCC
Confidence 3444443 599999999999999999999733349999999999999999999999987799999999998844 8999
Q ss_pred EEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCCC
Q 048309 139 RIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPD 180 (288)
Q Consensus 139 ~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 180 (288)
-|++... .....++..+.+.+++||.+........+
T Consensus 259 rIim~~p------~~a~~fl~~A~~~~k~~g~iHyy~~~~e~ 294 (341)
T COG2520 259 RIIMGLP------KSAHEFLPLALELLKDGGIIHYYEFVPED 294 (341)
T ss_pred EEEeCCC------CcchhhHHHHHHHhhcCcEEEEEeccchh
Confidence 9998743 23356777788899999998887765443
|
|
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.7e-08 Score=79.70 Aligned_cols=73 Identities=23% Similarity=0.356 Sum_probs=56.7
Q ss_pred CEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC---CCC-CCCEEEEcc
Q 048309 71 HEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP---KAK-KYDRIISCE 144 (288)
Q Consensus 71 ~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~---~~~-~fD~I~~~~ 144 (288)
..|+|+.||.|+.++++|+. ..+|++||+++..++.|+.+++-.|+.++++++++|+.++. ... .+|+|++..
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~-~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSP 77 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFART-FDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSP 77 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHT-T-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE--
T ss_pred CEEEEeccCcCHHHHHHHHh-CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECC
Confidence 36999999999999999996 66999999999999999999999999889999999998864 111 289999864
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.66 E-value=6.8e-07 Score=81.19 Aligned_cols=119 Identities=18% Similarity=0.227 Sum_probs=93.9
Q ss_pred HHHHcCCCCCCEEEEECCcccHHHHHHHHc-c--CCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC---CC
Q 048309 61 LIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-T--GCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP---KA 134 (288)
Q Consensus 61 l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~--~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~---~~ 134 (288)
....+++.+|.+|||+.++.|+=+.++++. . +..|+++|.++.-++..++++++.|+. ++.++..|...++ ..
T Consensus 148 ~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~-nv~~~~~d~~~~~~~~~~ 226 (355)
T COG0144 148 PALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVR-NVIVVNKDARRLAELLPG 226 (355)
T ss_pred HHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCC-ceEEEecccccccccccc
Confidence 345678889999999999999999999887 2 456799999999999999999999994 6889999987654 22
Q ss_pred -CCCCEEEEccchhhh-------------CHh-------hHHHHHHHHhcccccCcEEEEEeecCCC
Q 048309 135 -KKYDRIISCEMMEAV-------------GHE-------YMEEYFGCCESLLAKDGLLVLQFSSTPD 180 (288)
Q Consensus 135 -~~fD~I~~~~~l~~~-------------~~~-------~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 180 (288)
++||.|+....+.-. ++. -..+++..+.++|||||.++.++++...
T Consensus 227 ~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~ 293 (355)
T COG0144 227 GEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTP 293 (355)
T ss_pred cCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCch
Confidence 359999986433211 111 2356889999999999999999887544
|
|
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=98.66 E-value=7e-08 Score=87.25 Aligned_cols=112 Identities=16% Similarity=0.226 Sum_probs=99.9
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CCCCCCEEEEcc
Q 048309 66 RVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAKKYDRIISCE 144 (288)
Q Consensus 66 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~~fD~I~~~~ 144 (288)
...++..++|+|||.|....+++....+.++|+|.++..+..+.......++..+..++..|+...+ .+..||.+.+..
T Consensus 107 ~~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld 186 (364)
T KOG1269|consen 107 SCFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLE 186 (364)
T ss_pred cCcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEe
Confidence 4567779999999999999999887678999999999999999888888888777788889999988 889999999999
Q ss_pred chhhhCHhhHHHHHHHHhcccccCcEEEEEeecCC
Q 048309 145 MMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTP 179 (288)
Q Consensus 145 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 179 (288)
+.+|. ++...++++++++++|||+++..++...
T Consensus 187 ~~~~~--~~~~~~y~Ei~rv~kpGG~~i~~e~i~~ 219 (364)
T KOG1269|consen 187 VVCHA--PDLEKVYAEIYRVLKPGGLFIVKEWIKT 219 (364)
T ss_pred ecccC--CcHHHHHHHHhcccCCCceEEeHHHHHh
Confidence 99999 7899999999999999999999776543
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=5.2e-07 Score=89.06 Aligned_cols=118 Identities=16% Similarity=0.160 Sum_probs=87.3
Q ss_pred HHHHHHcCC-CCCCEEEEECCcccHHHHHHHHc-----c--------------------------------------CCE
Q 048309 59 SLLIEKARV-SKEHEVLEIGCGWGTFAIEVVRQ-----T--------------------------------------GCN 94 (288)
Q Consensus 59 ~~l~~~~~~-~~~~~vLDiGcG~G~~~~~la~~-----~--------------------------------------~~~ 94 (288)
..++...+. .++..++|.+||+|++.+..|.. + ..+
T Consensus 179 aa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~ 258 (702)
T PRK11783 179 AAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSK 258 (702)
T ss_pred HHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCce
Confidence 445555554 56789999999999999887652 1 136
Q ss_pred EEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-C--CCCCCEEEEccchhhh--CHhhHHHHHHHHhcccc---
Q 048309 95 YTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-K--AKKYDRIISCEMMEAV--GHEYMEEYFGCCESLLA--- 166 (288)
Q Consensus 95 v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~--~~~fD~I~~~~~l~~~--~~~~~~~~l~~~~~~Lk--- 166 (288)
++|+|+++.+++.|++++..+|+.+.+++.++|+.+++ + .+++|+|+++..+..- ...+...+...+.+.++
T Consensus 259 i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~ 338 (702)
T PRK11783 259 FYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQF 338 (702)
T ss_pred EEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999878999999999876 2 3579999999765332 12344455555444444
Q ss_pred cCcEEEEEee
Q 048309 167 KDGLLVLQFS 176 (288)
Q Consensus 167 pgG~l~~~~~ 176 (288)
+|+.+++.+.
T Consensus 339 ~g~~~~llt~ 348 (702)
T PRK11783 339 GGWNAALFSS 348 (702)
T ss_pred CCCeEEEEeC
Confidence 8888877443
|
|
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=4.1e-07 Score=78.71 Aligned_cols=98 Identities=14% Similarity=0.033 Sum_probs=75.8
Q ss_pred CCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHc--CC-CCceEEEEcccCCCCCCCCCCEEEEcc
Q 048309 68 SKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEA--GL-QDHIRLYLCDYRQLPKAKKYDRIISCE 144 (288)
Q Consensus 68 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~--g~-~~~v~~~~~d~~~~~~~~~fD~I~~~~ 144 (288)
+.+++||-||.|.|..++.+.+++ .+|+.||+++++++.|++.+... ++ .++++++.. +.+. ..++||+|+...
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~-~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~~-~~~~fDVIIvDs 147 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYD-THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLDL-DIKKYDLIICLQ 147 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcC-CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhhc-cCCcCCEEEEcC
Confidence 456899999999999999999985 49999999999999999955432 12 357777762 2111 347899999875
Q ss_pred chhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 145 MMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 145 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
.. ...+++.+.+.|+|||.++.+.
T Consensus 148 ~~-------~~~fy~~~~~~L~~~Gi~v~Qs 171 (262)
T PRK00536 148 EP-------DIHKIDGLKRMLKEDGVFISVA 171 (262)
T ss_pred CC-------ChHHHHHHHHhcCCCcEEEECC
Confidence 31 2678899999999999999853
|
|
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.64 E-value=5.7e-07 Score=78.88 Aligned_cols=124 Identities=20% Similarity=0.151 Sum_probs=82.5
Q ss_pred HHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC
Q 048309 55 MRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP 132 (288)
Q Consensus 55 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~ 132 (288)
.+.+..+...+..-.+.+|||+|||+|..+-.+... .-.+++++|.|+.|++.++..++...-............+..
T Consensus 19 ~~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 98 (274)
T PF09243_consen 19 YRVLSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFL 98 (274)
T ss_pred HHHHHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccc
Confidence 344455555554445679999999999866554443 235799999999999999998765422111111111111111
Q ss_pred CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCCC
Q 048309 133 KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPD 180 (288)
Q Consensus 133 ~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 180 (288)
.-...|+|++.++|..++.+....+++++.+.+++ .+++.+.+.+.
T Consensus 99 ~~~~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~~ 144 (274)
T PF09243_consen 99 PFPPDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGTPA 144 (274)
T ss_pred cCCCCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCChH
Confidence 22344999999999999767788888888887766 78877766654
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=98.62 E-value=9.4e-07 Score=78.75 Aligned_cols=114 Identities=11% Similarity=0.149 Sum_probs=86.7
Q ss_pred HHHHHHcCCCCCCEEEEECCcccHHHHHHHHc-----cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceE--EEEcccCCC
Q 048309 59 SLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-----TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIR--LYLCDYRQL 131 (288)
Q Consensus 59 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-----~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~--~~~~d~~~~ 131 (288)
..+++.+ .++..++|+|||.|.=+..|.+. ....++++|+|.++++.+.+.+....++ .++ -+++|+.+.
T Consensus 68 ~~Ia~~i--~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p-~l~v~~l~gdy~~~ 144 (319)
T TIGR03439 68 SDIAASI--PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFS-HVRCAGLLGTYDDG 144 (319)
T ss_pred HHHHHhc--CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCC-CeEEEEEEecHHHH
Confidence 4455554 36678999999999977766554 2467999999999999999998744443 454 488888663
Q ss_pred ----C---CCCCCCEEEEcc-chhhhCHhhHHHHHHHHhc-ccccCcEEEEEe
Q 048309 132 ----P---KAKKYDRIISCE-MMEAVGHEYMEEYFGCCES-LLAKDGLLVLQF 175 (288)
Q Consensus 132 ----~---~~~~fD~I~~~~-~l~~~~~~~~~~~l~~~~~-~LkpgG~l~~~~ 175 (288)
+ ......+++..+ ++..+++++...+++++++ .|+|||.|++..
T Consensus 145 l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~ 197 (319)
T TIGR03439 145 LAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGL 197 (319)
T ss_pred HhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEec
Confidence 2 123467777765 7888888889999999999 999999999843
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=98.61 E-value=6.7e-08 Score=79.51 Aligned_cols=110 Identities=16% Similarity=0.197 Sum_probs=72.5
Q ss_pred HHHHHHHHHcC-CCC--CCEEEEECCcccHHHHHHHHcc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCC
Q 048309 56 RKHSLLIEKAR-VSK--EHEVLEIGCGWGTFAIEVVRQT--GCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQ 130 (288)
Q Consensus 56 ~~~~~l~~~~~-~~~--~~~vLDiGcG~G~~~~~la~~~--~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~ 130 (288)
-++.++.+..+ ..+ +.+|||+||++|+++..+.++. ..+|+|+|+.+. ... .++..+++|+.+
T Consensus 7 ~KL~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~~-~~~~~i~~d~~~ 74 (181)
T PF01728_consen 7 FKLYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DPL-QNVSFIQGDITN 74 (181)
T ss_dssp HHHHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS--TTEEBTTGGGEE
T ss_pred HHHHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------ccc-cceeeeecccch
Confidence 36667777777 444 4899999999999999999874 479999999875 111 356777777654
Q ss_pred CC---------C--CCCCCEEEEccchhhhC---------HhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 131 LP---------K--AKKYDRIISCEMMEAVG---------HEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 131 ~~---------~--~~~fD~I~~~~~l~~~~---------~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
.. . .+.+|+|+|..+....+ .+-....+.-+...|+|||.+++..+.
T Consensus 75 ~~~~~~i~~~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~ 141 (181)
T PF01728_consen 75 PENIKDIRKLLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFK 141 (181)
T ss_dssp EEHSHHGGGSHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESS
T ss_pred hhHHHhhhhhccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEecc
Confidence 21 1 26899999987322211 123344555667889999999986655
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.61 E-value=6.8e-07 Score=76.13 Aligned_cols=109 Identities=17% Similarity=0.159 Sum_probs=89.5
Q ss_pred HHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC---
Q 048309 58 HSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP--- 132 (288)
Q Consensus 58 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~--- 132 (288)
+..++..+...||.+|+|-|+|+|.++..+++. +-.++..+|..+...+.|.+-+++.|+++++++..-|+....
T Consensus 94 ia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ 173 (314)
T KOG2915|consen 94 IAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLI 173 (314)
T ss_pred HHHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccc
Confidence 367888999999999999999999999999987 557999999999999999999999999999999999998855
Q ss_pred CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEE
Q 048309 133 KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVL 173 (288)
Q Consensus 133 ~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~ 173 (288)
....+|+|+..-. .+-.++-.+...||.+|.-++
T Consensus 174 ks~~aDaVFLDlP-------aPw~AiPha~~~lk~~g~r~c 207 (314)
T KOG2915|consen 174 KSLKADAVFLDLP-------APWEAIPHAAKILKDEGGRLC 207 (314)
T ss_pred cccccceEEEcCC-------ChhhhhhhhHHHhhhcCceEE
Confidence 3578999998643 233344444567877764333
|
|
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=98.58 E-value=8e-07 Score=70.10 Aligned_cols=84 Identities=13% Similarity=0.233 Sum_probs=68.5
Q ss_pred CCCCCEEEEECCcccHHHHHHHH-----ccCCEEEEEcCCHHHHHHHHHHHHHcC--CCCceEEEEcccCCCCCCCCCCE
Q 048309 67 VSKEHEVLEIGCGWGTFAIEVVR-----QTGCNYTGITLSAEQMKYAEMKVNEAG--LQDHIRLYLCDYRQLPKAKKYDR 139 (288)
Q Consensus 67 ~~~~~~vLDiGcG~G~~~~~la~-----~~~~~v~giD~s~~~~~~a~~~~~~~g--~~~~v~~~~~d~~~~~~~~~fD~ 139 (288)
..+..+|+|+|||.|+++..++. .++.+|++||.++..++.+.++.+..+ +..++++..++..+.......++
T Consensus 23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (141)
T PF13679_consen 23 SKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESSSDPPDI 102 (141)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcccCCCeE
Confidence 35678999999999999999998 678899999999999999999988776 44567777777766555577888
Q ss_pred EEEccchhhhC
Q 048309 140 IISCEMMEAVG 150 (288)
Q Consensus 140 I~~~~~l~~~~ 150 (288)
++...+...++
T Consensus 103 ~vgLHaCG~Ls 113 (141)
T PF13679_consen 103 LVGLHACGDLS 113 (141)
T ss_pred EEEeecccchH
Confidence 88876665554
|
|
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.57 E-value=7.7e-07 Score=78.75 Aligned_cols=102 Identities=18% Similarity=0.203 Sum_probs=85.7
Q ss_pred CEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCEEEEccchhhhC
Q 048309 71 HEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMMEAVG 150 (288)
Q Consensus 71 ~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~~~~~l~~~~ 150 (288)
...+|+|.|.|..+..+...+ .+|-+++.+...+..+...+. .| |+.+-+|+.+-.| +-|+|++.++++|++
T Consensus 179 ~~avDvGgGiG~v~k~ll~~f-p~ik~infdlp~v~~~a~~~~-~g----V~~v~gdmfq~~P--~~daI~mkWiLhdwt 250 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSKY-PHIKGINFDLPFVLAAAPYLA-PG----VEHVAGDMFQDTP--KGDAIWMKWILHDWT 250 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHhC-CCCceeecCHHHHHhhhhhhc-CC----cceecccccccCC--CcCeEEEEeecccCC
Confidence 789999999999999998863 358899988888777766654 33 6778888866432 456999999999999
Q ss_pred HhhHHHHHHHHhcccccCcEEEEEeecCCC
Q 048309 151 HEYMEEYFGCCESLLAKDGLLVLQFSSTPD 180 (288)
Q Consensus 151 ~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 180 (288)
+++..+++++|...|+|||.+++.+...|.
T Consensus 251 DedcvkiLknC~~sL~~~GkIiv~E~V~p~ 280 (342)
T KOG3178|consen 251 DEDCVKILKNCKKSLPPGGKIIVVENVTPE 280 (342)
T ss_pred hHHHHHHHHHHHHhCCCCCEEEEEeccCCC
Confidence 999999999999999999999999887665
|
|
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.57 E-value=5.8e-07 Score=77.33 Aligned_cols=128 Identities=11% Similarity=0.076 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHHHcCCCCC-CEEEEECCcc--cHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEE
Q 048309 51 KVAQMRKHSLLIEKARVSKE-HEVLEIGCGW--GTFAIEVVRQ--TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYL 125 (288)
Q Consensus 51 ~~a~~~~~~~l~~~~~~~~~-~~vLDiGcG~--G~~~~~la~~--~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~ 125 (288)
..+.+.++.+.++.+....| ..+||||||- -.+...+|+. +.++|+-+|.+|-.+..++..+....- ....+++
T Consensus 49 ar~nR~Fl~RaVr~la~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~-g~t~~v~ 127 (267)
T PF04672_consen 49 ARANRAFLRRAVRYLAEEAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR-GRTAYVQ 127 (267)
T ss_dssp HHHHHHHHHHHHHHHHCTT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT-SEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHhcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC-ccEEEEe
Confidence 34556666777777655434 5799999994 4456677765 889999999999999999998876532 2389999
Q ss_pred cccCCCC-------CCCCCC-----EEEEccchhhhCH-hhHHHHHHHHhcccccCcEEEEEeecCC
Q 048309 126 CDYRQLP-------KAKKYD-----RIISCEMMEAVGH-EYMEEYFGCCESLLAKDGLLVLQFSSTP 179 (288)
Q Consensus 126 ~d~~~~~-------~~~~fD-----~I~~~~~l~~~~~-~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 179 (288)
+|+.+.. ..+-+| .++...+++|+++ +++..+++.+...|.||..|+++..+..
T Consensus 128 aD~r~p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d 194 (267)
T PF04672_consen 128 ADLRDPEAILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDD 194 (267)
T ss_dssp --TT-HHHHHCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-T
T ss_pred CCCCCHHHHhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCC
Confidence 9998743 112333 6778889999965 6899999999999999999999887754
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.5e-06 Score=78.32 Aligned_cols=117 Identities=21% Similarity=0.271 Sum_probs=90.9
Q ss_pred HHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccC---------------------------------C-------EEEE
Q 048309 58 HSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTG---------------------------------C-------NYTG 97 (288)
Q Consensus 58 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~---------------------------------~-------~v~g 97 (288)
...++...+-.++..++|-=||+|++.+..|.... . .++|
T Consensus 180 AaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G 259 (381)
T COG0116 180 AAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYG 259 (381)
T ss_pred HHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEE
Confidence 34566777777888999999999999998877510 1 3779
Q ss_pred EcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCC-CCCCEEEEccchhh-hC-H---h-hHHHHHHHHhcccccCcE
Q 048309 98 ITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKA-KKYDRIISCEMMEA-VG-H---E-YMEEYFGCCESLLAKDGL 170 (288)
Q Consensus 98 iD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~l~~-~~-~---~-~~~~~l~~~~~~LkpgG~ 170 (288)
+|+++.+++.|+.+++.+|+.+.|+|.++|+.++..+ +.+|+|+|+....- ++ + + -+..+.+.+.+.++.-+.
T Consensus 260 ~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~ 339 (381)
T COG0116 260 SDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSR 339 (381)
T ss_pred ecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCce
Confidence 9999999999999999999999999999999999844 89999999875421 11 1 1 234555566677777777
Q ss_pred EEEE
Q 048309 171 LVLQ 174 (288)
Q Consensus 171 l~~~ 174 (288)
+++.
T Consensus 340 ~v~t 343 (381)
T COG0116 340 YVFT 343 (381)
T ss_pred EEEE
Confidence 7773
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=98.55 E-value=5.1e-07 Score=82.01 Aligned_cols=95 Identities=21% Similarity=0.348 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCC
Q 048309 52 VAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQL 131 (288)
Q Consensus 52 ~a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~ 131 (288)
......+..+++.++..++ +|||+-||.|.++..+|.. ..+|+|||+++++++.|+++++.+++ .|++++.++++++
T Consensus 180 ~~~~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~-~~~V~gvE~~~~av~~A~~Na~~N~i-~n~~f~~~~~~~~ 256 (352)
T PF05958_consen 180 EQNEKLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKK-AKKVIGVEIVEEAVEDARENAKLNGI-DNVEFIRGDAEDF 256 (352)
T ss_dssp HHHHHHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCC-SSEEEEEES-HHHHHHHHHHHHHTT---SEEEEE--SHHC
T ss_pred HHHHHHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhh-CCeEEEeeCCHHHHHHHHHHHHHcCC-CcceEEEeeccch
Confidence 3445566778888887666 8999999999999999986 66999999999999999999999999 5899999887654
Q ss_pred C-----------------CCCCCCEEEEccchhhh
Q 048309 132 P-----------------KAKKYDRIISCEMMEAV 149 (288)
Q Consensus 132 ~-----------------~~~~fD~I~~~~~l~~~ 149 (288)
. ....+|+|+....=.-+
T Consensus 257 ~~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~G~ 291 (352)
T PF05958_consen 257 AKALAKAREFNRLKGIDLKSFKFDAVILDPPRAGL 291 (352)
T ss_dssp CCHHCCS-GGTTGGGS-GGCTTESEEEE---TT-S
T ss_pred hHHHHhhHHHHhhhhhhhhhcCCCEEEEcCCCCCc
Confidence 2 12368999887544444
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.1e-06 Score=80.24 Aligned_cols=98 Identities=12% Similarity=0.098 Sum_probs=82.7
Q ss_pred CCEEEEECCcccHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC--CCCCCCEEEEccc
Q 048309 70 EHEVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP--KAKKYDRIISCEM 145 (288)
Q Consensus 70 ~~~vLDiGcG~G~~~~~la~~--~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~--~~~~fD~I~~~~~ 145 (288)
+.+|||+.||+|..++.++.+ ...+|+++|+++.+++.++++++.+++. +++++++|+..+. ....||+|....
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~-~~~v~~~Da~~~l~~~~~~fDvIdlDP- 122 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVE-NIEVPNEDAANVLRYRNRKFHVIDIDP- 122 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEchhHHHHHHHhCCCCCEEEeCC-
Confidence 458999999999999999987 2368999999999999999999998874 7899999998765 346799999865
Q ss_pred hhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 146 MEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 146 l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
+ . ....++..+.+.+++||.++++
T Consensus 123 f-G----s~~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 123 F-G----TPAPFVDSAIQASAERGLLLVT 146 (374)
T ss_pred C-C----CcHHHHHHHHHhcccCCEEEEE
Confidence 2 2 2357888888999999999995
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.4e-06 Score=74.06 Aligned_cols=102 Identities=21% Similarity=0.355 Sum_probs=80.9
Q ss_pred CCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHH---c------------------------------
Q 048309 69 KEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNE---A------------------------------ 115 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~---~------------------------------ 115 (288)
...+||--|||.|+++..+|.. |..+.|.|.|-.|+-..+-.+.. .
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~-G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv 134 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKL-GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDV 134 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhc-cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCc
Confidence 3578999999999999999997 88999999999997554433221 0
Q ss_pred ------CCCCceEEEEcccCCCC-C---CCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEE
Q 048309 116 ------GLQDHIRLYLCDYRQLP-K---AKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVL 173 (288)
Q Consensus 116 ------g~~~~v~~~~~d~~~~~-~---~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~ 173 (288)
..+.++....+|+.++- . .++||+|++.+.+... .+.-++++.+.++|||||..+-
T Consensus 135 ~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA--~Ni~~Yi~tI~~lLkpgG~WIN 200 (270)
T PF07942_consen 135 DPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTA--ENIIEYIETIEHLLKPGGYWIN 200 (270)
T ss_pred CcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeech--HHHHHHHHHHHHHhccCCEEEe
Confidence 01135677788887765 3 3799999999888877 8999999999999999997664
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=98.45 E-value=2.9e-06 Score=73.79 Aligned_cols=122 Identities=20% Similarity=0.249 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHcCCCC---CCEEEEECCcc-cHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHH-HcCCCCceEEE
Q 048309 52 VAQMRKHSLLIEKARVSK---EHEVLEIGCGW-GTFAIEVVRQ--TGCNYTGITLSAEQMKYAEMKVN-EAGLQDHIRLY 124 (288)
Q Consensus 52 ~a~~~~~~~l~~~~~~~~---~~~vLDiGcG~-G~~~~~la~~--~~~~v~giD~s~~~~~~a~~~~~-~~g~~~~v~~~ 124 (288)
..+.+..+.-++.+.... +.+|+=||||. -..++.+++. .+..|+++|+++++++.+++.+. ..|+..+++++
T Consensus 100 ~nY~~L~~lE~~~l~~~~~~~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~ 179 (276)
T PF03059_consen 100 PNYEKLVRLEYAALRIHAGDPPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFI 179 (276)
T ss_dssp HHHHHHHHHHHH-HTT--TT---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEE
T ss_pred HHHHHHHHHHHHHHhhcCCcccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEE
Confidence 344444444444444333 35999999997 4555566654 46789999999999999999888 55676789999
Q ss_pred EcccCCCC-CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 125 LCDYRQLP-KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 125 ~~d~~~~~-~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
.+|..+.. .-..||+|+...... +..++..+++.++.+.++||..+++-
T Consensus 180 ~~d~~~~~~dl~~~DvV~lAalVg-~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 180 TADVLDVTYDLKEYDVVFLAALVG-MDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp ES-GGGG-GG----SEEEE-TT-S-----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred ecchhccccccccCCEEEEhhhcc-cccchHHHHHHHHHhhCCCCcEEEEe
Confidence 99998876 447899998765443 23357899999999999999999985
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.45 E-value=4.3e-07 Score=73.21 Aligned_cols=101 Identities=16% Similarity=0.175 Sum_probs=80.5
Q ss_pred CEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCEEEEccchhhhC
Q 048309 71 HEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMMEAVG 150 (288)
Q Consensus 71 ~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~~~~~l~~~~ 150 (288)
..+.|+|.|+|.++...++. ..+|++|+.+|...+.|.+++.-.|. .|++++.+|+.++.. ...|+|+|-..--.+-
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a~~a~eN~~v~g~-~n~evv~gDA~~y~f-e~ADvvicEmlDTaLi 110 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRARLAEENLHVPGD-VNWEVVVGDARDYDF-ENADVVICEMLDTALI 110 (252)
T ss_pred hceeeccCCcchHHHHHHhh-hceEEEEecCcHHHHHhhhcCCCCCC-cceEEEecccccccc-cccceeHHHHhhHHhh
Confidence 58999999999999888775 67999999999999999999877777 689999999999885 6789999843211121
Q ss_pred HhhHHHHHHHHhcccccCcEEEEE
Q 048309 151 HEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 151 ~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
.+..-..++.+...|+.++.++=+
T Consensus 111 ~E~qVpV~n~vleFLr~d~tiiPq 134 (252)
T COG4076 111 EEKQVPVINAVLEFLRYDPTIIPQ 134 (252)
T ss_pred cccccHHHHHHHHHhhcCCccccH
Confidence 134456777888899999988743
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.1e-07 Score=87.59 Aligned_cols=98 Identities=16% Similarity=0.276 Sum_probs=66.1
Q ss_pred CEEEEECCcccHHHHHHHHccCCEEEEE---cCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CCCCCCEEEEccch
Q 048309 71 HEVLEIGCGWGTFAIEVVRQTGCNYTGI---TLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAKKYDRIISCEMM 146 (288)
Q Consensus 71 ~~vLDiGcG~G~~~~~la~~~~~~v~gi---D~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~~fD~I~~~~~l 146 (288)
..+||+|||+|.++.++..+ +..+..+ |..+.+++.|- +.|++. -+-......+| +++.||.|.|..++
T Consensus 119 R~~LDvGcG~aSF~a~l~~r-~V~t~s~a~~d~~~~qvqfal----eRGvpa--~~~~~~s~rLPfp~~~fDmvHcsrc~ 191 (506)
T PF03141_consen 119 RTALDVGCGVASFGAYLLER-NVTTMSFAPNDEHEAQVQFAL----ERGVPA--MIGVLGSQRLPFPSNAFDMVHCSRCL 191 (506)
T ss_pred EEEEeccceeehhHHHHhhC-CceEEEcccccCCchhhhhhh----hcCcch--hhhhhccccccCCccchhhhhccccc
Confidence 46899999999999999886 4333332 22333444443 346542 22233346678 88999999998776
Q ss_pred hhhCHhhHHHHHHHHhcccccCcEEEEEee
Q 048309 147 EAVGHEYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 147 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
..... +-..++-++.|+|+|||+++++..
T Consensus 192 i~W~~-~~g~~l~evdRvLRpGGyfv~S~p 220 (506)
T PF03141_consen 192 IPWHP-NDGFLLFEVDRVLRPGGYFVLSGP 220 (506)
T ss_pred ccchh-cccceeehhhhhhccCceEEecCC
Confidence 54432 224588899999999999998543
|
; GO: 0008168 methyltransferase activity |
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.44 E-value=3.1e-06 Score=70.06 Aligned_cols=114 Identities=14% Similarity=0.118 Sum_probs=80.9
Q ss_pred HHHHHHHHHHcC-CCCCCEEEEECCcccHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCC
Q 048309 55 MRKHSLLIEKAR-VSKEHEVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQL 131 (288)
Q Consensus 55 ~~~~~~l~~~~~-~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~ 131 (288)
..++.++.++.. +.++..|+|+|+.+|++++.+++. .+..|+|+|+.|- + .. .++.++++|+..-
T Consensus 30 a~KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~---------~--~~-~~V~~iq~d~~~~ 97 (205)
T COG0293 30 AYKLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPM---------K--PI-PGVIFLQGDITDE 97 (205)
T ss_pred HHHHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccc---------c--cC-CCceEEeeeccCc
Confidence 345566666665 457899999999999999999987 3345999999772 1 22 4699999999874
Q ss_pred C---------CCCCCCEEEEccch--------hhhCH-hhHHHHHHHHhcccccCcEEEEEeecCCC
Q 048309 132 P---------KAKKYDRIISCEMM--------EAVGH-EYMEEYFGCCESLLAKDGLLVLQFSSTPD 180 (288)
Q Consensus 132 ~---------~~~~fD~I~~~~~l--------~~~~~-~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 180 (288)
+ ....+|+|+|...- .|... .--...+.-+..+|+|||.+++..+-...
T Consensus 98 ~~~~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~ 164 (205)
T COG0293 98 DTLEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGED 164 (205)
T ss_pred cHHHHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCC
Confidence 3 23447999986533 44311 12244566777899999999997765443
|
|
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.8e-06 Score=77.22 Aligned_cols=116 Identities=21% Similarity=0.302 Sum_probs=79.8
Q ss_pred HHHHHHcCCCCCCEEEEECCcccHHHHHHHHc--------cCCEEEEEcCCHHHHHHHHHHHHHcCCCC-ceEEEEcccC
Q 048309 59 SLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ--------TGCNYTGITLSAEQMKYAEMKVNEAGLQD-HIRLYLCDYR 129 (288)
Q Consensus 59 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~--------~~~~v~giD~s~~~~~~a~~~~~~~g~~~-~v~~~~~d~~ 129 (288)
..+++.+...++.+|+|.+||+|.+...+.+. ...+++|+|+++.++..|+.++.-.+... +..+..+|..
T Consensus 36 ~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l 115 (311)
T PF02384_consen 36 DLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSL 115 (311)
T ss_dssp HHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TT
T ss_pred HHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccccc
Confidence 34555557777889999999999998887662 46789999999999999998876655432 2468888887
Q ss_pred CCC-C--CCCCCEEEEccchhhh--CH-----------------hhHHHHHHHHhcccccCcEEEEE
Q 048309 130 QLP-K--AKKYDRIISCEMMEAV--GH-----------------EYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 130 ~~~-~--~~~fD~I~~~~~l~~~--~~-----------------~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
..+ . ...||+|+++..+... .. ..-..++..+.+.|++||++.+.
T Consensus 116 ~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~I 182 (311)
T PF02384_consen 116 ENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAII 182 (311)
T ss_dssp TSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEE
T ss_pred cccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEE
Confidence 655 2 4799999998654322 00 11235889999999999998764
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.37 E-value=7.4e-06 Score=67.63 Aligned_cols=120 Identities=14% Similarity=0.107 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC
Q 048309 53 AQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP 132 (288)
Q Consensus 53 a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~ 132 (288)
..+..+-+.+.......|.+||+||-|-|.....+-+.+..+=+.|+..|..++..+...-.. ..||-++.+-.++..
T Consensus 85 ~WEtpiMha~A~ai~tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~e--k~nViil~g~WeDvl 162 (271)
T KOG1709|consen 85 RWETPIMHALAEAISTKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWRE--KENVIILEGRWEDVL 162 (271)
T ss_pred hhhhHHHHHHHHHHhhCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhccccc--ccceEEEecchHhhh
Confidence 333443333333333678899999999999988887775667888999999998777654222 257888888776643
Q ss_pred ---CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEee
Q 048309 133 ---KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 133 ---~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
+++.||.|+....-++. ++...+.+.+.++|||+|++-....
T Consensus 163 ~~L~d~~FDGI~yDTy~e~y--Edl~~~hqh~~rLLkP~gv~SyfNg 207 (271)
T KOG1709|consen 163 NTLPDKHFDGIYYDTYSELY--EDLRHFHQHVVRLLKPEGVFSYFNG 207 (271)
T ss_pred ccccccCcceeEeechhhHH--HHHHHHHHHHhhhcCCCceEEEecC
Confidence 67889999987665777 8899999999999999998776443
|
|
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=98.36 E-value=3.3e-06 Score=74.42 Aligned_cols=118 Identities=17% Similarity=0.197 Sum_probs=92.2
Q ss_pred HHHHcCCCCCCEEEEECCcccHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC---CCC
Q 048309 61 LIEKARVSKEHEVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP---KAK 135 (288)
Q Consensus 61 l~~~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~---~~~ 135 (288)
....+.+.++..|||+.++.|+=+..+++. ....+++.|+++.-+...++++++.|+ .++.+...|..... ...
T Consensus 77 ~~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~-~~v~~~~~D~~~~~~~~~~~ 155 (283)
T PF01189_consen 77 VALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGV-FNVIVINADARKLDPKKPES 155 (283)
T ss_dssp HHHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT--SSEEEEESHHHHHHHHHHTT
T ss_pred ccccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCC-ceEEEEeecccccccccccc
Confidence 344567789999999999999999999887 346999999999999999999999998 47888888887763 344
Q ss_pred CCCEEEEccchhhh------C-------H-------hhHHHHHHHHhccc----ccCcEEEEEeecCC
Q 048309 136 KYDRIISCEMMEAV------G-------H-------EYMEEYFGCCESLL----AKDGLLVLQFSSTP 179 (288)
Q Consensus 136 ~fD~I~~~~~l~~~------~-------~-------~~~~~~l~~~~~~L----kpgG~l~~~~~~~~ 179 (288)
.||.|+........ + + ....++++.+.+.+ ||||+++.++.+..
T Consensus 156 ~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~ 223 (283)
T PF01189_consen 156 KFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLS 223 (283)
T ss_dssp TEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHH
T ss_pred ccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHH
Confidence 69999985432211 1 0 11355789999999 99999999887643
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.1e-05 Score=62.95 Aligned_cols=103 Identities=28% Similarity=0.404 Sum_probs=73.5
Q ss_pred EEEECCcccHHHHHHHHccC--CEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCC--CC-CC-CCCCEEEEccch
Q 048309 73 VLEIGCGWGTFAIEVVRQTG--CNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQ--LP-KA-KKYDRIISCEMM 146 (288)
Q Consensus 73 vLDiGcG~G~~~~~la~~~~--~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~--~~-~~-~~fD~I~~~~~l 146 (288)
++|+|||+|... .++.... ..++|+|+++.++..++......+. ..+.+..+|... .+ .. ..||++.+....
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGL-GLVDFVVADALGGVLPFEDSASFDLVISLLVL 129 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCC-CceEEEEeccccCCCCCCCCCceeEEeeeeeh
Confidence 999999999976 3333322 4899999999999885554433211 116888888876 55 33 489999444444
Q ss_pred hhhCHhhHHHHHHHHhcccccCcEEEEEeecCCC
Q 048309 147 EAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPD 180 (288)
Q Consensus 147 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 180 (288)
++.. ....+.++.+.|+|+|.+++.......
T Consensus 130 ~~~~---~~~~~~~~~~~l~~~g~~~~~~~~~~~ 160 (257)
T COG0500 130 HLLP---PAKALRELLRVLKPGGRLVLSDLLRDG 160 (257)
T ss_pred hcCC---HHHHHHHHHHhcCCCcEEEEEeccCCC
Confidence 4442 788999999999999999997766443
|
|
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.33 E-value=4.8e-06 Score=71.77 Aligned_cols=110 Identities=20% Similarity=0.188 Sum_probs=75.6
Q ss_pred CCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCC---------------------------Cc
Q 048309 68 SKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQ---------------------------DH 120 (288)
Q Consensus 68 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~---------------------------~~ 120 (288)
..|.++||||||+-..-..-|...-.+|+..|.++.-++..+++++..+-. ..
T Consensus 55 ~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~ 134 (256)
T PF01234_consen 55 VKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRA 134 (256)
T ss_dssp S-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHh
Confidence 357799999999844322222223347999999999998888776543210 12
Q ss_pred e-EEEEcccCCCC---C----CCCCCEEEEccchhhh--CHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 121 I-RLYLCDYRQLP---K----AKKYDRIISCEMMEAV--GHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 121 v-~~~~~d~~~~~---~----~~~fD~I~~~~~l~~~--~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
| +++..|+.+.+ + +.+||+|++.+.++.. ..+.+...++++.++|||||.|++....
T Consensus 135 Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l 201 (256)
T PF01234_consen 135 VKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVL 201 (256)
T ss_dssp EEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEES
T ss_pred hceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEc
Confidence 4 47788887754 2 2359999999999987 4467888999999999999999997654
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=98.31 E-value=2.8e-07 Score=68.86 Aligned_cols=98 Identities=18% Similarity=0.128 Sum_probs=46.6
Q ss_pred EEECCcccHHHHHHHHc--cC--CEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC---CCCCCCEEEEccch
Q 048309 74 LEIGCGWGTFAIEVVRQ--TG--CNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP---KAKKYDRIISCEMM 146 (288)
Q Consensus 74 LDiGcG~G~~~~~la~~--~~--~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~---~~~~fD~I~~~~~l 146 (288)
||||+..|..+..+++. .. .+++++|..+. .+..++.+++.++..+++++.++..+.- ..+++|+|+..+.-
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~H 79 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGDH 79 (106)
T ss_dssp --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES--
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCCC
Confidence 69999999998888765 22 37999999996 4445555555666678999999997642 34799999988642
Q ss_pred hhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 147 EAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 147 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
. . +.....++.+.+.|+|||++++.+
T Consensus 80 ~-~--~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 80 S-Y--EAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp --H--HHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred C-H--HHHHHHHHHHHHHcCCCeEEEEeC
Confidence 1 1 456778899999999999999865
|
|
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=98.29 E-value=8.4e-06 Score=68.23 Aligned_cols=100 Identities=23% Similarity=0.338 Sum_probs=71.4
Q ss_pred EEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCC-CCCCCCCCEEEEccchhhhC
Q 048309 73 VLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQ-LPKAKKYDRIISCEMMEAVG 150 (288)
Q Consensus 73 vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~-~~~~~~fD~I~~~~~l~~~~ 150 (288)
|.||||--|.+...|.++ ...+++++|+++..++.|+++++..|+.++++++.+|..+ +++.+..|+|+..++ +
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGM----G 76 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGM----G 76 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE-----
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecC----C
Confidence 689999999999999998 3347999999999999999999999999999999999765 445455899987654 3
Q ss_pred HhhHHHHHHHHhcccccCcEEEEEee
Q 048309 151 HEYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 151 ~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
..-..+++++....++....|++...
T Consensus 77 G~lI~~ILe~~~~~~~~~~~lILqP~ 102 (205)
T PF04816_consen 77 GELIIEILEAGPEKLSSAKRLILQPN 102 (205)
T ss_dssp HHHHHHHHHHTGGGGTT--EEEEEES
T ss_pred HHHHHHHHHhhHHHhccCCeEEEeCC
Confidence 24456667766666666566666443
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=98.28 E-value=4.4e-06 Score=72.86 Aligned_cols=99 Identities=12% Similarity=0.169 Sum_probs=76.6
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCC-
Q 048309 56 RKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKA- 134 (288)
Q Consensus 56 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~- 134 (288)
...+.+++.+++.++..|+|||+|+|.++..+++. +.+++++|+++.+++..++.+... ++++++.+|+.++...
T Consensus 17 ~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~-~~~v~~vE~d~~~~~~L~~~~~~~---~~~~vi~~D~l~~~~~~ 92 (262)
T PF00398_consen 17 NIADKIVDALDLSEGDTVLEIGPGPGALTRELLKR-GKRVIAVEIDPDLAKHLKERFASN---PNVEVINGDFLKWDLYD 92 (262)
T ss_dssp HHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHH-SSEEEEEESSHHHHHHHHHHCTTC---SSEEEEES-TTTSCGGG
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhcc-cCcceeecCcHhHHHHHHHHhhhc---ccceeeecchhccccHH
Confidence 45678888888888999999999999999999987 589999999999999998876532 6899999999998732
Q ss_pred ---CCCCEEEEccchhhhCHhhHHHHHHHHhc
Q 048309 135 ---KKYDRIISCEMMEAVGHEYMEEYFGCCES 163 (288)
Q Consensus 135 ---~~fD~I~~~~~l~~~~~~~~~~~l~~~~~ 163 (288)
.....|+++-.. +++ ..++.++..
T Consensus 93 ~~~~~~~~vv~NlPy-~is----~~il~~ll~ 119 (262)
T PF00398_consen 93 LLKNQPLLVVGNLPY-NIS----SPILRKLLE 119 (262)
T ss_dssp HCSSSEEEEEEEETG-TGH----HHHHHHHHH
T ss_pred hhcCCceEEEEEecc-cch----HHHHHHHhh
Confidence 355677776554 442 344544444
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=6.9e-06 Score=70.04 Aligned_cols=90 Identities=12% Similarity=0.163 Sum_probs=75.9
Q ss_pred HHHHHHcCCCCCC--EEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHc------C--CCCceEEEEccc
Q 048309 59 SLLIEKARVSKEH--EVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEA------G--LQDHIRLYLCDY 128 (288)
Q Consensus 59 ~~l~~~~~~~~~~--~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~------g--~~~~v~~~~~d~ 128 (288)
+.+++.++++++. +|||+-+|+|..+..++.. |++|+++|-++......++.++.. + +..+++++.+|.
T Consensus 76 ~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~-G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da 154 (250)
T PRK10742 76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV-GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASS 154 (250)
T ss_pred cHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcH
Confidence 6788888888887 9999999999999999996 889999999999999999888774 2 225789999999
Q ss_pred CCCC--CCCCCCEEEEccchhhh
Q 048309 129 RQLP--KAKKYDRIISCEMMEAV 149 (288)
Q Consensus 129 ~~~~--~~~~fD~I~~~~~l~~~ 149 (288)
.++- ...+||+|++...+.|-
T Consensus 155 ~~~L~~~~~~fDVVYlDPMfp~~ 177 (250)
T PRK10742 155 LTALTDITPRPQVVYLDPMFPHK 177 (250)
T ss_pred HHHHhhCCCCCcEEEECCCCCCC
Confidence 8764 34589999998887764
|
|
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.1e-05 Score=71.76 Aligned_cols=98 Identities=12% Similarity=0.119 Sum_probs=70.5
Q ss_pred HHHHHHHHHcC--------CCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcc
Q 048309 56 RKHSLLIEKAR--------VSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCD 127 (288)
Q Consensus 56 ~~~~~l~~~~~--------~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d 127 (288)
-++..++..+. +.+|.++|||||++|+++..++++ +.+|++||..+ +- ..+... ++|+.+.+|
T Consensus 190 lKLeEA~~~F~~~~~~~~~~~~g~~vlDLGAsPGGWT~~L~~r-G~~V~AVD~g~-l~----~~L~~~---~~V~h~~~d 260 (357)
T PRK11760 190 LKLEEAFHVFIPRDEWDERLAPGMRAVDLGAAPGGWTYQLVRR-GMFVTAVDNGP-MA----QSLMDT---GQVEHLRAD 260 (357)
T ss_pred HHHHHHHHhcccchhhhcccCCCCEEEEeCCCCcHHHHHHHHc-CCEEEEEechh-cC----HhhhCC---CCEEEEecc
Confidence 35555555554 358899999999999999999997 77999999654 21 112222 579999999
Q ss_pred cCCCCC-CCCCCEEEEccchhhhCHhhHHHHHHHHhcccccC
Q 048309 128 YRQLPK-AKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKD 168 (288)
Q Consensus 128 ~~~~~~-~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~Lkpg 168 (288)
...+.+ .+.+|.++|.-+ +.+....+-+.++|..|
T Consensus 261 ~fr~~p~~~~vDwvVcDmv------e~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 261 GFKFRPPRKNVDWLVCDMV------EKPARVAELMAQWLVNG 296 (357)
T ss_pred CcccCCCCCCCCEEEEecc------cCHHHHHHHHHHHHhcC
Confidence 888763 788999999755 33455566666677655
|
|
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.20 E-value=6.3e-06 Score=67.10 Aligned_cols=108 Identities=16% Similarity=0.254 Sum_probs=82.8
Q ss_pred HHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCC
Q 048309 59 SLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYD 138 (288)
Q Consensus 59 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD 138 (288)
+.+++.-..-.|++|||+|+|+|..++..++.....|+..|+.|-.+...+-+++.+|+ ++.+...|..- .+..||
T Consensus 69 R~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv--~i~~~~~d~~g--~~~~~D 144 (218)
T COG3897 69 RYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGV--SILFTHADLIG--SPPAFD 144 (218)
T ss_pred HHHhcCccccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccc--eeEEeeccccC--CCccee
Confidence 44555555567899999999999999988887566899999999999999999999886 68888888877 457899
Q ss_pred EEEEccchhhhCHhhHHHHHHHHhcccccCcEEEE
Q 048309 139 RIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVL 173 (288)
Q Consensus 139 ~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~ 173 (288)
+++...++..- ..-..++. +.+.|+..|.-++
T Consensus 145 l~LagDlfy~~--~~a~~l~~-~~~~l~~~g~~vl 176 (218)
T COG3897 145 LLLAGDLFYNH--TEADRLIP-WKDRLAEAGAAVL 176 (218)
T ss_pred EEEeeceecCc--hHHHHHHH-HHHHHHhCCCEEE
Confidence 99998876543 34455555 5566655555444
|
|
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=98.16 E-value=2.6e-05 Score=65.15 Aligned_cols=105 Identities=17% Similarity=0.108 Sum_probs=77.7
Q ss_pred HHcCCCCCCEEEEECCcccHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC----CCCC
Q 048309 63 EKARVSKEHEVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP----KAKK 136 (288)
Q Consensus 63 ~~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~----~~~~ 136 (288)
+.+.+++|.+||-+|..+|+...+++.- +...|.+++.|+...+..-..++.. .|+-.+..|+.... .-+.
T Consensus 67 ~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R---~NIiPIl~DAr~P~~Y~~lv~~ 143 (229)
T PF01269_consen 67 ENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR---PNIIPILEDARHPEKYRMLVEM 143 (229)
T ss_dssp S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS---TTEEEEES-TTSGGGGTTTS--
T ss_pred cccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC---CceeeeeccCCChHHhhccccc
Confidence 3456789999999999999999998876 4679999999998877766666655 58999999998643 3468
Q ss_pred CCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 137 YDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 137 fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
.|+|++.-+ + +.+..-+..++...||+||.+++.
T Consensus 144 VDvI~~DVa--Q--p~Qa~I~~~Na~~fLk~gG~~~i~ 177 (229)
T PF01269_consen 144 VDVIFQDVA--Q--PDQARIAALNARHFLKPGGHLIIS 177 (229)
T ss_dssp EEEEEEE-S--S--TTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccEEEecCC--C--hHHHHHHHHHHHhhccCCcEEEEE
Confidence 999998633 2 255667888888999999999985
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.16 E-value=6.9e-07 Score=73.81 Aligned_cols=76 Identities=21% Similarity=0.321 Sum_probs=63.7
Q ss_pred CCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCC-----CCCCCEEEEc
Q 048309 69 KEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPK-----AKKYDRIISC 143 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~-----~~~fD~I~~~ 143 (288)
....|+|.-||.|+.+++.+.+ ++.|++||++|.-+..|+.+++-.|++++|+|+++|+.++-. ...+|+++..
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~-~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~s 172 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQ-GPYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLS 172 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHh-CCeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeecC
Confidence 4568999999999999999886 789999999999999999999999999999999999988641 2234566655
Q ss_pred cc
Q 048309 144 EM 145 (288)
Q Consensus 144 ~~ 145 (288)
..
T Consensus 173 pp 174 (263)
T KOG2730|consen 173 PP 174 (263)
T ss_pred CC
Confidence 43
|
|
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.15 E-value=5.1e-07 Score=73.88 Aligned_cols=103 Identities=16% Similarity=0.163 Sum_probs=74.6
Q ss_pred CCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CCCCCCEEEEccchh
Q 048309 69 KEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAKKYDRIISCEMME 147 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~~fD~I~~~~~l~ 147 (288)
.+.++||+|.|.|..+..++.. -.+|.+.++|..|....+.+ + .. +....++. .+-++|+|.|.+.+.
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~-feevyATElS~tMr~rL~kk----~----yn--Vl~~~ew~~t~~k~dli~clNlLD 180 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPT-FEEVYATELSWTMRDRLKKK----N----YN--VLTEIEWLQTDVKLDLILCLNLLD 180 (288)
T ss_pred CCeeEEeccCCCcchhhhhcch-HHHHHHHHhhHHHHHHHhhc----C----Cc--eeeehhhhhcCceeehHHHHHHHH
Confidence 4579999999999999988875 34799999999998766543 2 12 22222332 445799999998887
Q ss_pred hhCHhhHHHHHHHHhccccc-CcEEEEEeecCCCccccc
Q 048309 148 AVGHEYMEEYFGCCESLLAK-DGLLVLQFSSTPDARYNE 185 (288)
Q Consensus 148 ~~~~~~~~~~l~~~~~~Lkp-gG~l~~~~~~~~~~~~~~ 185 (288)
-. -++-.+++.++.+|+| .|++++.- +.|-..|.+
T Consensus 181 Rc--~~p~kLL~Di~~vl~psngrvivaL-VLP~~hYVE 216 (288)
T KOG3987|consen 181 RC--FDPFKLLEDIHLVLAPSNGRVIVAL-VLPYMHYVE 216 (288)
T ss_pred hh--cChHHHHHHHHHHhccCCCcEEEEE-Eecccceee
Confidence 65 5778999999999999 78887753 334444433
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=98.14 E-value=2.6e-05 Score=74.82 Aligned_cols=78 Identities=14% Similarity=0.178 Sum_probs=58.2
Q ss_pred CCCEEEEECCcccHHHHHHHHc-c--------CCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCC-----C-C
Q 048309 69 KEHEVLEIGCGWGTFAIEVVRQ-T--------GCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQL-----P-K 133 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~~la~~-~--------~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~-----~-~ 133 (288)
...+|||.|||+|.+...++.. . ...++|+|+++..++.++.++...+. ..+.+.+.|.... . .
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~-~~~~i~~~d~l~~~~~~~~~~ 109 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFAL-LEINVINFNSLSYVLLNIESY 109 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCC-CCceeeecccccccccccccc
Confidence 4468999999999999888765 2 14789999999999999998876652 2356666665432 1 2
Q ss_pred CCCCCEEEEccchh
Q 048309 134 AKKYDRIISCEMME 147 (288)
Q Consensus 134 ~~~fD~I~~~~~l~ 147 (288)
.+.||+|+++..+.
T Consensus 110 ~~~fD~IIgNPPy~ 123 (524)
T TIGR02987 110 LDLFDIVITNPPYG 123 (524)
T ss_pred cCcccEEEeCCCcc
Confidence 35899999987654
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=98.09 E-value=2.7e-05 Score=68.39 Aligned_cols=80 Identities=14% Similarity=0.190 Sum_probs=51.0
Q ss_pred CCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHc-CCCCceEEEEcccCC--C---C-CCCCCCEEE
Q 048309 70 EHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEA-GLQDHIRLYLCDYRQ--L---P-KAKKYDRII 141 (288)
Q Consensus 70 ~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~-g~~~~v~~~~~d~~~--~---~-~~~~fD~I~ 141 (288)
.-++||||||....-..|+.+ .+++++|.|+++..++.|+++++.+ ++.++|+++...-.. + . ..+.||+.+
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dftm 182 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFTM 182 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEEE
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEEe
Confidence 457999999987654444444 8999999999999999999999999 898899998764322 1 1 446899999
Q ss_pred Eccchhhh
Q 048309 142 SCEMMEAV 149 (288)
Q Consensus 142 ~~~~l~~~ 149 (288)
|+..++..
T Consensus 183 CNPPFy~s 190 (299)
T PF05971_consen 183 CNPPFYSS 190 (299)
T ss_dssp E-----SS
T ss_pred cCCccccC
Confidence 99888765
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.5e-05 Score=62.57 Aligned_cols=59 Identities=14% Similarity=0.177 Sum_probs=51.3
Q ss_pred EEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCC
Q 048309 72 EVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQL 131 (288)
Q Consensus 72 ~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~ 131 (288)
+++|+|||.|..+..+++. +.++++++|+++.+.+.++++++.++++ ++++++..+.+-
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~-~v~~~~~al~~~ 60 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLP-NVVLLNAAVGDR 60 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCC-cEEEEEeeeeCC
Confidence 4899999999999999887 5568999999999999999999988874 688888877653
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=98.04 E-value=3.6e-05 Score=68.04 Aligned_cols=89 Identities=12% Similarity=0.209 Sum_probs=74.6
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC---
Q 048309 57 KHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP--- 132 (288)
Q Consensus 57 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~--- 132 (288)
.++.+++.+.+.++..++|.-||.|+.+..+++. +.++|+|+|.++.+++.++++++.. ..+++++++++.++.
T Consensus 8 ll~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~--~~R~~~i~~nF~~l~~~l 85 (305)
T TIGR00006 8 LLDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF--EGRVVLIHDNFANFFEHL 85 (305)
T ss_pred hHHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc--CCcEEEEeCCHHHHHHHH
Confidence 5677888888889999999999999999999987 4579999999999999999988654 258999999998764
Q ss_pred ---CCCCCCEEEEccchh
Q 048309 133 ---KAKKYDRIISCEMME 147 (288)
Q Consensus 133 ---~~~~fD~I~~~~~l~ 147 (288)
...++|.|++...+.
T Consensus 86 ~~~~~~~vDgIl~DLGvS 103 (305)
T TIGR00006 86 DELLVTKIDGILVDLGVS 103 (305)
T ss_pred HhcCCCcccEEEEeccCC
Confidence 225799999875443
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.02 E-value=8.9e-06 Score=75.22 Aligned_cols=73 Identities=21% Similarity=0.334 Sum_probs=63.8
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCC
Q 048309 57 KHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQL 131 (288)
Q Consensus 57 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~ 131 (288)
...-+-+.++++.+..++|+.||||..+..++++ ..+|+||+++++.++.|+.++..+|+ .|++|+++-++++
T Consensus 371 Lys~i~e~~~l~~~k~llDv~CGTG~iglala~~-~~~ViGvEi~~~aV~dA~~nA~~Ngi-sNa~Fi~gqaE~~ 443 (534)
T KOG2187|consen 371 LYSTIGEWAGLPADKTLLDVCCGTGTIGLALARG-VKRVIGVEISPDAVEDAEKNAQINGI-SNATFIVGQAEDL 443 (534)
T ss_pred HHHHHHHHhCCCCCcEEEEEeecCCceehhhhcc-ccceeeeecChhhcchhhhcchhcCc-cceeeeecchhhc
Confidence 3445567778888999999999999999999986 66999999999999999999999999 5999999966653
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.97 E-value=5.8e-05 Score=67.09 Aligned_cols=110 Identities=22% Similarity=0.223 Sum_probs=82.7
Q ss_pred CCCCEEEEECCcccHHHHHHHHcc-CCEEEEEcCCHHHHHHHHHHH--HHc---C-CCCceEEEEcccCCCC--CCCCCC
Q 048309 68 SKEHEVLEIGCGWGTFAIEVVRQT-GCNYTGITLSAEQMKYAEMKV--NEA---G-LQDHIRLYLCDYRQLP--KAKKYD 138 (288)
Q Consensus 68 ~~~~~vLDiGcG~G~~~~~la~~~-~~~v~giD~s~~~~~~a~~~~--~~~---g-~~~~v~~~~~d~~~~~--~~~~fD 138 (288)
+...+||-+|.|.|..++.+.+.| -.+++-+|++|.|++.++.+. ... . -+++++++..|+.++- ....||
T Consensus 288 ~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD 367 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFD 367 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhccccc
Confidence 345789999999999999999985 568999999999999998432 221 1 1368999999999876 567999
Q ss_pred EEEEccchh---hhCHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 139 RIISCEMME---AVGHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 139 ~I~~~~~l~---~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
+|+....-. .++.---.++..-+.+.|+++|.++++...
T Consensus 368 ~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags 409 (508)
T COG4262 368 VVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGS 409 (508)
T ss_pred EEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCC
Confidence 999753211 111112366888899999999999996543
|
|
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.94 E-value=3e-05 Score=63.06 Aligned_cols=118 Identities=9% Similarity=0.026 Sum_probs=78.5
Q ss_pred HHHHHcCCCCCCEEEEECCcccHHHHHHHHc--cCCEEEEEcCCHHHH----H--HHHHHHHHcCCCCceEEEEcccCCC
Q 048309 60 LLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQM----K--YAEMKVNEAGLQDHIRLYLCDYRQL 131 (288)
Q Consensus 60 ~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~giD~s~~~~----~--~a~~~~~~~g~~~~v~~~~~d~~~~ 131 (288)
+++...+++++.+|+|+-.|.|.++..++.. +...|++.-..+... + ..+...++... .|++.+-.+...+
T Consensus 39 E~L~FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~-aN~e~~~~~~~A~ 117 (238)
T COG4798 39 EVLAFAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVY-ANVEVIGKPLVAL 117 (238)
T ss_pred ceeEEeccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhh-hhhhhhCCccccc
Confidence 4666778899999999999999999999876 445777765444311 1 11111112222 3566666666555
Q ss_pred CCCCCCCEEEEccchhhh-----CHhhHHHHHHHHhcccccCcEEEEEeecC
Q 048309 132 PKAKKYDRIISCEMMEAV-----GHEYMEEYFGCCESLLAKDGLLVLQFSST 178 (288)
Q Consensus 132 ~~~~~fD~I~~~~~l~~~-----~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 178 (288)
.+.+..|++......+-+ ++.....+.+.+++.|||||++++.+...
T Consensus 118 ~~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a 169 (238)
T COG4798 118 GAPQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRA 169 (238)
T ss_pred CCCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccc
Confidence 555777777764333222 33567889999999999999999987653
|
|
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=97.93 E-value=2.8e-05 Score=64.72 Aligned_cols=85 Identities=24% Similarity=0.282 Sum_probs=67.2
Q ss_pred CEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC----CCCCCCEEEEccch
Q 048309 71 HEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP----KAKKYDRIISCEMM 146 (288)
Q Consensus 71 ~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~----~~~~fD~I~~~~~l 146 (288)
.++|||||=+..+...- ..--.|+.||+++. .-.+.++|+.+.| ..++||+|.+..++
T Consensus 53 lrlLEVGals~~N~~s~--~~~fdvt~IDLns~----------------~~~I~qqDFm~rplp~~~~e~FdvIs~SLVL 114 (219)
T PF11968_consen 53 LRLLEVGALSTDNACST--SGWFDVTRIDLNSQ----------------HPGILQQDFMERPLPKNESEKFDVISLSLVL 114 (219)
T ss_pred ceEEeecccCCCCcccc--cCceeeEEeecCCC----------------CCCceeeccccCCCCCCcccceeEEEEEEEE
Confidence 69999998654443322 12346999999872 3467889998865 46799999999999
Q ss_pred hhhC-HhhHHHHHHHHhcccccCcE-----EEE
Q 048309 147 EAVG-HEYMEEYFGCCESLLAKDGL-----LVL 173 (288)
Q Consensus 147 ~~~~-~~~~~~~l~~~~~~LkpgG~-----l~~ 173 (288)
..+| +..+-++++++++.|+|+|. +++
T Consensus 115 NfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFl 147 (219)
T PF11968_consen 115 NFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFL 147 (219)
T ss_pred eeCCCHHHHHHHHHHHHHHhCCCCccCcceEEE
Confidence 9995 67789999999999999999 776
|
|
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00014 Score=65.90 Aligned_cols=116 Identities=14% Similarity=0.143 Sum_probs=90.8
Q ss_pred HcCCCCCCEEEEECCcccHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC---CCCCCC
Q 048309 64 KARVSKEHEVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP---KAKKYD 138 (288)
Q Consensus 64 ~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~---~~~~fD 138 (288)
.+++++|.+|||+.+..|+=+.++|.- -...|++.|.+...++..+.++.+.|+ .+.-+...|...++ ..++||
T Consensus 236 aL~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv-~ntiv~n~D~~ef~~~~~~~~fD 314 (460)
T KOG1122|consen 236 ALDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGV-TNTIVSNYDGREFPEKEFPGSFD 314 (460)
T ss_pred ecCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCC-CceEEEccCcccccccccCcccc
Confidence 356789999999999999888887765 234899999999999999999999999 47888888998775 334899
Q ss_pred EEEEccchhh--h-----------CH-------hhHHHHHHHHhcccccCcEEEEEeecCCC
Q 048309 139 RIISCEMMEA--V-----------GH-------EYMEEYFGCCESLLAKDGLLVLQFSSTPD 180 (288)
Q Consensus 139 ~I~~~~~l~~--~-----------~~-------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 180 (288)
-|+....... + +. .-..+++..+..++++||+|+.++.+...
T Consensus 315 RVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~ 376 (460)
T KOG1122|consen 315 RVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITV 376 (460)
T ss_pred eeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecch
Confidence 9997543332 0 00 11356788888999999999999887544
|
|
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.89 E-value=1.3e-05 Score=63.20 Aligned_cols=112 Identities=16% Similarity=0.182 Sum_probs=80.3
Q ss_pred HHHHHcCCCCCCEEEEECCcc-cHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHc---CCCCceEEEEcccCCCC--
Q 048309 60 LLIEKARVSKEHEVLEIGCGW-GTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEA---GLQDHIRLYLCDYRQLP-- 132 (288)
Q Consensus 60 ~l~~~~~~~~~~~vLDiGcG~-G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~---g~~~~v~~~~~d~~~~~-- 132 (288)
.+++..+.-.|.+|||+|.|- |..+..+|.. +...|...|-+++.++..++....+ ++ .++.++..+.....
T Consensus 20 ~~l~~~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~-tsc~vlrw~~~~aqsq 98 (201)
T KOG3201|consen 20 TILRDPNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSL-TSCCVLRWLIWGAQSQ 98 (201)
T ss_pred HHHhchhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhccccccc-ceehhhHHHHhhhHHH
Confidence 344444445678999999995 6666666665 7789999999999998888776544 22 23433333333322
Q ss_pred -CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 133 -KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 133 -~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
....||.|+|...+..- +....+++.+.++|+|.|.-++.
T Consensus 99 ~eq~tFDiIlaADClFfd--E~h~sLvdtIk~lL~p~g~Al~f 139 (201)
T KOG3201|consen 99 QEQHTFDIILAADCLFFD--EHHESLVDTIKSLLRPSGRALLF 139 (201)
T ss_pred HhhCcccEEEeccchhHH--HHHHHHHHHHHHHhCcccceeEe
Confidence 34589999998877655 67788999999999999997763
|
|
| >KOG4058 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00015 Score=56.49 Aligned_cols=121 Identities=14% Similarity=0.175 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCC
Q 048309 54 QMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPK 133 (288)
Q Consensus 54 ~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~ 133 (288)
..+-+++++..+...+..+.+|+|+|.|......++..-...+|++++|=.+.+++-..-+.|+.+...|...|+...+.
T Consensus 57 tteQv~nVLSll~~n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl 136 (199)
T KOG4058|consen 57 TTEQVENVLSLLRGNPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDL 136 (199)
T ss_pred cHHHHHHHHHHccCCCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhccc
Confidence 34455667777777777799999999999988888764367999999999999999988888888889999999988772
Q ss_pred CCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCCC
Q 048309 134 AKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPD 180 (288)
Q Consensus 134 ~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 180 (288)
..|..++..++-. -+..+..++..-+..+..++..-+..|.
T Consensus 137 -~dy~~vviFgaes-----~m~dLe~KL~~E~p~nt~vvacRFPLP~ 177 (199)
T KOG4058|consen 137 -RDYRNVVIFGAES-----VMPDLEDKLRTELPANTRVVACRFPLPT 177 (199)
T ss_pred -cccceEEEeehHH-----HHhhhHHHHHhhCcCCCeEEEEecCCCc
Confidence 2344444433322 2345556677777778887765555444
|
|
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=97.87 E-value=4.4e-05 Score=59.49 Aligned_cols=85 Identities=18% Similarity=0.217 Sum_probs=62.1
Q ss_pred EEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC---CCCCCCEEEEccch-h----hh--CHhhHHHHHHHHhc
Q 048309 94 NYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP---KAKKYDRIISCEMM-E----AV--GHEYMEEYFGCCES 163 (288)
Q Consensus 94 ~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~---~~~~fD~I~~~~~l-~----~~--~~~~~~~~l~~~~~ 163 (288)
+|+|+|+.+++++.+++++++.++..+++++..+=+.+. +.+++|+++.+... . .+ .++.-...++++.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al~ 80 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAALE 80 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHHH
Confidence 589999999999999999999999888999999888766 33589999887432 1 11 12445678999999
Q ss_pred ccccCcEEEEEeecC
Q 048309 164 LLAKDGLLVLQFSST 178 (288)
Q Consensus 164 ~LkpgG~l~~~~~~~ 178 (288)
+|+|||.+.+.....
T Consensus 81 lL~~gG~i~iv~Y~G 95 (140)
T PF06962_consen 81 LLKPGGIITIVVYPG 95 (140)
T ss_dssp HEEEEEEEEEEE--S
T ss_pred hhccCCEEEEEEeCC
Confidence 999999999976553
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00032 Score=58.46 Aligned_cols=110 Identities=16% Similarity=0.196 Sum_probs=84.6
Q ss_pred HHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CCC
Q 048309 58 HSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAK 135 (288)
Q Consensus 58 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~ 135 (288)
+..+++... .+.++.||||-.+++..++.+. +...+++.|+++..++.|.++++.+++..++++..+|....- .+.
T Consensus 7 L~~va~~V~--~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d 84 (226)
T COG2384 7 LTTVANLVK--QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELED 84 (226)
T ss_pred HHHHHHHHH--cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccC
Confidence 344444433 5667999999999999999988 667899999999999999999999999999999999996544 666
Q ss_pred CCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEE
Q 048309 136 KYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVL 173 (288)
Q Consensus 136 ~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~ 173 (288)
.+|+|+..++ +..-...++++-.+.|+.=-++++
T Consensus 85 ~~d~ivIAGM----GG~lI~~ILee~~~~l~~~~rlIL 118 (226)
T COG2384 85 EIDVIVIAGM----GGTLIREILEEGKEKLKGVERLIL 118 (226)
T ss_pred CcCEEEEeCC----cHHHHHHHHHHhhhhhcCcceEEE
Confidence 8999988654 223455666666666654445555
|
|
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00017 Score=61.45 Aligned_cols=81 Identities=16% Similarity=0.333 Sum_probs=64.1
Q ss_pred CCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCEEEEccc
Q 048309 67 VSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEM 145 (288)
Q Consensus 67 ~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~~~~~ 145 (288)
..+..+|+|||||.-=++..+... ++..++|+|++..+++.........+. +.++...|...-++....|+.+..=+
T Consensus 103 ~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~--~~~~~v~Dl~~~~~~~~~DlaLllK~ 180 (251)
T PF07091_consen 103 IPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGV--PHDARVRDLLSDPPKEPADLALLLKT 180 (251)
T ss_dssp S---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT---CEEEEEE-TTTSHTTSEESEEEEET-
T ss_pred CCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCC--CcceeEeeeeccCCCCCcchhhHHHH
Confidence 345789999999999888887765 668999999999999999999988886 57888889888777788999999988
Q ss_pred hhhh
Q 048309 146 MEAV 149 (288)
Q Consensus 146 l~~~ 149 (288)
++.+
T Consensus 181 lp~l 184 (251)
T PF07091_consen 181 LPCL 184 (251)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8887
|
|
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.79 E-value=9.8e-05 Score=60.56 Aligned_cols=107 Identities=12% Similarity=0.218 Sum_probs=78.3
Q ss_pred CCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcC------CCCceEEEEcccCCCC----CCCCC
Q 048309 69 KEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAG------LQDHIRLYLCDYRQLP----KAKKY 137 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g------~~~~v~~~~~d~~~~~----~~~~f 137 (288)
..-.+.|||||-|.+...|+.. +..-+.|.++--...++.+++++..+ ...|+.+...+...+. ..++.
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqL 139 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQL 139 (249)
T ss_pred ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhccc
Confidence 3356899999999999999988 88889999999999999999887654 2246778888777654 23455
Q ss_pred CEEEEccchhhhCHh------hHHHHHHHHhcccccCcEEEEEe
Q 048309 138 DRIISCEMMEAVGHE------YMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 138 D~I~~~~~l~~~~~~------~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
.-++..+.-.|+-.. --..++.+..-+|++||.++..+
T Consensus 140 skmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytit 183 (249)
T KOG3115|consen 140 SKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTIT 183 (249)
T ss_pred ccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEe
Confidence 555555555555110 12447788888999999988643
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00041 Score=62.12 Aligned_cols=100 Identities=23% Similarity=0.214 Sum_probs=72.6
Q ss_pred HHHcCCCCCCEEEEECCc-ccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcc-cCCCC-CCCCCC
Q 048309 62 IEKARVSKEHEVLEIGCG-WGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCD-YRQLP-KAKKYD 138 (288)
Q Consensus 62 ~~~~~~~~~~~vLDiGcG-~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d-~~~~~-~~~~fD 138 (288)
++..+..||++|+-+|+| .|..+.++|+..+++|+++|.+++-.+.|++.- .-.++... ..... ..+.||
T Consensus 159 lk~~~~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lG-------Ad~~i~~~~~~~~~~~~~~~d 231 (339)
T COG1064 159 LKKANVKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLG-------ADHVINSSDSDALEAVKEIAD 231 (339)
T ss_pred hhhcCCCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhC-------CcEEEEcCCchhhHHhHhhCc
Confidence 445678899999999977 488999999976799999999999999988762 23444433 22222 223499
Q ss_pred EEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 139 RIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 139 ~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
+|+..-. ...+....+.|++||++++.-..
T Consensus 232 ~ii~tv~---------~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 232 AIIDTVG---------PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred EEEECCC---------hhhHHHHHHHHhcCCEEEEECCC
Confidence 9998644 33455556899999999986544
|
|
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00027 Score=59.59 Aligned_cols=107 Identities=21% Similarity=0.196 Sum_probs=77.9
Q ss_pred HHHHHHHHHcCC-CCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceE-EEEcccCCCC-
Q 048309 56 RKHSLLIEKARV-SKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIR-LYLCDYRQLP- 132 (288)
Q Consensus 56 ~~~~~l~~~~~~-~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~-~~~~d~~~~~- 132 (288)
-++...++...+ .++..+||||+.||+++..+.++...+|+++|..-.++..--+ .. +++. +...|+..+.
T Consensus 65 ~KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR---~d---~rV~~~E~tN~r~l~~ 138 (245)
T COG1189 65 LKLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLR---ND---PRVIVLERTNVRYLTP 138 (245)
T ss_pred HHHHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHh---cC---CcEEEEecCChhhCCH
Confidence 455666777664 4678999999999999999998866789999998876643321 11 2343 4445666554
Q ss_pred --CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEE
Q 048309 133 --KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVL 173 (288)
Q Consensus 133 --~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~ 173 (288)
..+..|+++|.-++--+ ..++..+..+++|+|-+++
T Consensus 139 ~~~~~~~d~~v~DvSFISL-----~~iLp~l~~l~~~~~~~v~ 176 (245)
T COG1189 139 EDFTEKPDLIVIDVSFISL-----KLILPALLLLLKDGGDLVL 176 (245)
T ss_pred HHcccCCCeEEEEeehhhH-----HHHHHHHHHhcCCCceEEE
Confidence 34578999998665544 7788888999999998876
|
|
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00047 Score=56.62 Aligned_cols=104 Identities=20% Similarity=0.145 Sum_probs=81.2
Q ss_pred HcCCCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC----CCCCCC
Q 048309 64 KARVSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP----KAKKYD 138 (288)
Q Consensus 64 ~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~----~~~~fD 138 (288)
.+.+++|.+||-+|..+|+...+++.- ....+.+|+.|+......-..+++. .|+-.+.+|+.... .-+..|
T Consensus 71 ~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R---~Ni~PIL~DA~~P~~Y~~~Ve~VD 147 (231)
T COG1889 71 NFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR---PNIIPILEDARKPEKYRHLVEKVD 147 (231)
T ss_pred cCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC---CCceeeecccCCcHHhhhhccccc
Confidence 345789999999999999999998876 4468999999999887777776665 58899999998754 336799
Q ss_pred EEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 139 RIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 139 ~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
+|+..-+ .+.+..-+..++...||+||.+++.
T Consensus 148 viy~DVA----Qp~Qa~I~~~Na~~FLk~~G~~~i~ 179 (231)
T COG1889 148 VIYQDVA----QPNQAEILADNAEFFLKKGGYVVIA 179 (231)
T ss_pred EEEEecC----CchHHHHHHHHHHHhcccCCeEEEE
Confidence 9997522 2244455778889999999977764
|
|
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0032 Score=53.46 Aligned_cols=113 Identities=17% Similarity=0.190 Sum_probs=68.7
Q ss_pred HHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCC-C-
Q 048309 55 MRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQL-P- 132 (288)
Q Consensus 55 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~-~- 132 (288)
.+....+++...+ .|++||-+|=..-............+|+.+|+++..++..++.+++.|++ ++.+..|+.+. |
T Consensus 31 ~~Ra~~~~~~gdL-~gk~il~lGDDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~--i~~~~~DlR~~LP~ 107 (243)
T PF01861_consen 31 LRRAALMAERGDL-EGKRILFLGDDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLP--IEAVHYDLRDPLPE 107 (243)
T ss_dssp HHHHHHHHHTT-S-TT-EEEEES-TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT----EEEE---TTS---T
T ss_pred HHHHHHHHhcCcc-cCCEEEEEcCCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc--eEEEEecccccCCH
Confidence 3344445555443 68899999966533222222235679999999999999999999999984 99999999873 4
Q ss_pred -CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCc-EEEE
Q 048309 133 -KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDG-LLVL 173 (288)
Q Consensus 133 -~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG-~l~~ 173 (288)
..++||++++... +.+ +-..-|+.+..+.||..| ..++
T Consensus 108 ~~~~~fD~f~TDPP-yT~--~G~~LFlsRgi~~Lk~~g~~gy~ 147 (243)
T PF01861_consen 108 ELRGKFDVFFTDPP-YTP--EGLKLFLSRGIEALKGEGCAGYF 147 (243)
T ss_dssp TTSS-BSEEEE----SSH--HHHHHHHHHHHHTB-STT-EEEE
T ss_pred HHhcCCCEEEeCCC-CCH--HHHHHHHHHHHHHhCCCCceEEE
Confidence 4589999999754 222 566889999999998766 4444
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00079 Score=62.37 Aligned_cols=104 Identities=15% Similarity=0.240 Sum_probs=84.5
Q ss_pred EEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CCCCCCEEEEccchhhhC
Q 048309 72 EVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAKKYDRIISCEMMEAVG 150 (288)
Q Consensus 72 ~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~~fD~I~~~~~l~~~~ 150 (288)
+++-+|||.-.+...+-+..-..|+.+|+|+..++........ . ..-..+..+|+..+. ++++||+|+.-++++++-
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~-~-~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~ 128 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAK-E-RPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALF 128 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhcccc-C-CcceEEEEecchhccCCCcceeEEEecCcccccc
Confidence 8999999999998888776446899999999999877766431 1 135789999999988 889999999999998871
Q ss_pred -H-------hhHHHHHHHHhcccccCcEEEEEeec
Q 048309 151 -H-------EYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 151 -~-------~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
. ......+.+++++|++||+++..+..
T Consensus 129 ~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl~ 163 (482)
T KOG2352|consen 129 EDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTLV 163 (482)
T ss_pred CCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEee
Confidence 1 12355788999999999999887774
|
|
| >PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00027 Score=59.96 Aligned_cols=90 Identities=18% Similarity=0.189 Sum_probs=56.6
Q ss_pred HHHHHHcCCCCCC--EEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHH---HHcCC-----CCceEEEEccc
Q 048309 59 SLLIEKARVSKEH--EVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKV---NEAGL-----QDHIRLYLCDY 128 (288)
Q Consensus 59 ~~l~~~~~~~~~~--~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~---~~~g~-----~~~v~~~~~d~ 128 (288)
+.+++..+++++. +|||.-+|.|..+..++. .|++|+++|-||-+....+.-+ ....- ..+++++.+|.
T Consensus 63 ~~l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~-~G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~ 141 (234)
T PF04445_consen 63 DPLAKAVGLKPGMRPSVLDATAGLGRDAFVLAS-LGCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDA 141 (234)
T ss_dssp SHHHHHTT-BTTB---EEETT-TTSHHHHHHHH-HT--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-C
T ss_pred cHHHHHhCCCCCCCCEEEECCCcchHHHHHHHc-cCCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCH
Confidence 5577788777764 899999999999999987 4899999999998776655433 22211 13799999999
Q ss_pred CCCC--CCCCCCEEEEccchhhh
Q 048309 129 RQLP--KAKKYDRIISCEMMEAV 149 (288)
Q Consensus 129 ~~~~--~~~~fD~I~~~~~l~~~ 149 (288)
.++- ++.+||+|++..++.+-
T Consensus 142 ~~~L~~~~~s~DVVY~DPMFp~~ 164 (234)
T PF04445_consen 142 LEYLRQPDNSFDVVYFDPMFPER 164 (234)
T ss_dssp CCHCCCHSS--SEEEE--S----
T ss_pred HHHHhhcCCCCCEEEECCCCCCc
Confidence 8854 56899999999888763
|
; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A. |
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0011 Score=53.75 Aligned_cols=102 Identities=15% Similarity=0.160 Sum_probs=67.5
Q ss_pred CCCCCEEEEECCcccHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEc-ccCCCC---------CC
Q 048309 67 VSKEHEVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLC-DYRQLP---------KA 134 (288)
Q Consensus 67 ~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~-d~~~~~---------~~ 134 (288)
+.|+.+|||+||.+|.+++-..++ +...|.|||+-.- . .+ ..++++.+ |+.+.. ++
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~---------~--p~-~Ga~~i~~~dvtdp~~~~ki~e~lp~ 134 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI---------E--PP-EGATIIQGNDVTDPETYRKIFEALPN 134 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec---------c--CC-CCcccccccccCCHHHHHHHHHhCCC
Confidence 458899999999999999888776 6778999998441 1 11 23555555 665521 56
Q ss_pred CCCCEEEEccc--------hhhhCHhhH-HHHHHHHhcccccCcEEEEEeecCCC
Q 048309 135 KKYDRIISCEM--------MEAVGHEYM-EEYFGCCESLLAKDGLLVLQFSSTPD 180 (288)
Q Consensus 135 ~~fD~I~~~~~--------l~~~~~~~~-~~~l~~~~~~LkpgG~l~~~~~~~~~ 180 (288)
...|+|++... ..|..--++ .+++.-....++|+|.+++..+...+
T Consensus 135 r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e 189 (232)
T KOG4589|consen 135 RPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSE 189 (232)
T ss_pred CcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCc
Confidence 78999998632 223210111 22344456778899999998776543
|
|
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00076 Score=58.99 Aligned_cols=101 Identities=18% Similarity=0.326 Sum_probs=71.6
Q ss_pred CCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCC-------------------------------
Q 048309 70 EHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQ------------------------------- 118 (288)
Q Consensus 70 ~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~------------------------------- 118 (288)
..+||--|||.|+++..++.. |..+-|-+.|--|+-...=.+.....+
T Consensus 151 ki~iLvPGaGlGRLa~dla~~-G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~~ 229 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACL-GFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDIH 229 (369)
T ss_pred CceEEecCCCchhHHHHHHHh-cccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCcccc
Confidence 568999999999999999986 667788888887764333222100000
Q ss_pred --------CceEEEEcccCCCC----CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEE
Q 048309 119 --------DHIRLYLCDYRQLP----KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVL 173 (288)
Q Consensus 119 --------~~v~~~~~d~~~~~----~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~ 173 (288)
.......||+.+.- ..++||+|+.++.+... .+.-+++..+..+|||||+.+-
T Consensus 230 p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa--~NileYi~tI~~iLk~GGvWiN 294 (369)
T KOG2798|consen 230 PASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTA--HNILEYIDTIYKILKPGGVWIN 294 (369)
T ss_pred ccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeech--HHHHHHHHHHHHhccCCcEEEe
Confidence 11222345555432 23479999999877776 8899999999999999999875
|
|
| >KOG1501 consensus Arginine N-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00038 Score=63.34 Aligned_cols=72 Identities=19% Similarity=0.253 Sum_probs=60.4
Q ss_pred CEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC--CCCCCCEEEE
Q 048309 71 HEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP--KAKKYDRIIS 142 (288)
Q Consensus 71 ~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~--~~~~fD~I~~ 142 (288)
..|||||.|||.++...++..+..|++++.-..|.+.|++....+|..++|+++..-..+.. +....|+++.
T Consensus 68 v~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev~vg~~~RadI~v~ 141 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEVKVGGSSRADIAVR 141 (636)
T ss_pred EEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccceeeeccccceeeecCcchhhhhhH
Confidence 36899999999999888877666899999999999999999999999999999988777765 2334666654
|
|
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00068 Score=56.40 Aligned_cols=114 Identities=12% Similarity=0.072 Sum_probs=62.0
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc-----cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCC
Q 048309 56 RKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-----TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQ 130 (288)
Q Consensus 56 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-----~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~ 130 (288)
-.++.++-.+. +..|+|+|.-.|+.+..+|.. ..++|+|||++.... .++..+...+.++|+++++|..+
T Consensus 22 ~~~qeli~~~k---Pd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~--~~~a~e~hp~~~rI~~i~Gds~d 96 (206)
T PF04989_consen 22 VAYQELIWELK---PDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPH--NRKAIESHPMSPRITFIQGDSID 96 (206)
T ss_dssp HHHHHHHHHH-----SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT----S-GGGG----TTEEEEES-SSS
T ss_pred HHHHHHHHHhC---CCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchh--chHHHhhccccCceEEEECCCCC
Confidence 34556666654 569999999999888877652 357999999954322 12223334455789999999987
Q ss_pred CC-------C--CCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 131 LP-------K--AKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 131 ~~-------~--~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
.. . .....+|+- .+-|.- +...+.++....++++|+++++.+..
T Consensus 97 ~~~~~~v~~~~~~~~~vlVil-Ds~H~~--~hvl~eL~~y~plv~~G~Y~IVeDt~ 149 (206)
T PF04989_consen 97 PEIVDQVRELASPPHPVLVIL-DSSHTH--EHVLAELEAYAPLVSPGSYLIVEDTI 149 (206)
T ss_dssp THHHHTSGSS----SSEEEEE-SS------SSHHHHHHHHHHT--TT-EEEETSHH
T ss_pred HHHHHHHHHhhccCCceEEEE-CCCccH--HHHHHHHHHhCccCCCCCEEEEEecc
Confidence 53 1 122223333 333222 55677788899999999999996543
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0011 Score=58.96 Aligned_cols=113 Identities=19% Similarity=0.148 Sum_probs=72.7
Q ss_pred CCCEEEEECCcccHHHHHHHHc-cC-CEEEEEcCCHHHHHHHHHHHHHcCCC---CceEEEEcccCCCCCCCCCCEEEEc
Q 048309 69 KEHEVLEIGCGWGTFAIEVVRQ-TG-CNYTGITLSAEQMKYAEMKVNEAGLQ---DHIRLYLCDYRQLPKAKKYDRIISC 143 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~~la~~-~~-~~v~giD~s~~~~~~a~~~~~~~g~~---~~v~~~~~d~~~~~~~~~fD~I~~~ 143 (288)
.++++||+|.|.|.-+..+-.- +. .+++.++.|+..-+......+..... .+..-++.|-..++....|++++..
T Consensus 113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~i~~ 192 (484)
T COG5459 113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTLAIVL 192 (484)
T ss_pred CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeehhhhh
Confidence 4568999999988765544332 22 36888888887766665554433221 1222334444445555677777765
Q ss_pred cchhhhC-HhhHHHHHHHHhcccccCcEEEEEeecCCCc
Q 048309 144 EMMEAVG-HEYMEEYFGCCESLLAKDGLLVLQFSSTPDA 181 (288)
Q Consensus 144 ~~l~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 181 (288)
.-+-+.+ +..+...++.+..++.|||.+++.+.+.|..
T Consensus 193 ~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~G 231 (484)
T COG5459 193 DELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTPAG 231 (484)
T ss_pred hhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCchh
Confidence 5444442 2334558999999999999999988777653
|
|
| >PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.00057 Score=60.49 Aligned_cols=88 Identities=14% Similarity=0.154 Sum_probs=65.1
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC---
Q 048309 57 KHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP--- 132 (288)
Q Consensus 57 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~--- 132 (288)
.+..+++.+.+.++..++|.--|.|+.+..+.+. ++++++|+|-++.+++.+++++... .+++.++.+++.++.
T Consensus 8 ll~Evl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~--~~r~~~~~~~F~~l~~~l 85 (310)
T PF01795_consen 8 LLKEVLEALNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF--DDRFIFIHGNFSNLDEYL 85 (310)
T ss_dssp THHHHHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC--CTTEEEEES-GGGHHHHH
T ss_pred cHHHHHHhhCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc--cceEEEEeccHHHHHHHH
Confidence 4567888888889999999999999999999987 6689999999999999998877643 368999999998764
Q ss_pred ----CCCCCCEEEEccch
Q 048309 133 ----KAKKYDRIISCEMM 146 (288)
Q Consensus 133 ----~~~~fD~I~~~~~l 146 (288)
...++|.|+....+
T Consensus 86 ~~~~~~~~~dgiL~DLGv 103 (310)
T PF01795_consen 86 KELNGINKVDGILFDLGV 103 (310)
T ss_dssp HHTTTTS-EEEEEEE-S-
T ss_pred HHccCCCccCEEEEcccc
Confidence 12479999886544
|
The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A. |
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0046 Score=58.73 Aligned_cols=100 Identities=19% Similarity=0.193 Sum_probs=68.6
Q ss_pred CCCCCEEEEECCcc-cHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCC-----------CC--
Q 048309 67 VSKEHEVLEIGCGW-GTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQ-----------LP-- 132 (288)
Q Consensus 67 ~~~~~~vLDiGcG~-G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~-----------~~-- 132 (288)
..++.+|+=+|||. |..++..++..|++|+++|.+++..+.+++. |. +++..|..+ ..
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aesl----GA----~~v~i~~~e~~~~~~gya~~~s~~ 233 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESM----GA----EFLELDFEEEGGSGDGYAKVMSEE 233 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc----CC----eEEEeccccccccccchhhhcchh
Confidence 45789999999997 8888888888788999999999988887763 32 222111111 00
Q ss_pred -----------CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEee
Q 048309 133 -----------KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 133 -----------~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
....+|+|+.......- ..+..+.+++.+.+||||+++....
T Consensus 234 ~~~~~~~~~~~~~~gaDVVIetag~pg~--~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 234 FIKAEMALFAEQAKEVDIIITTALIPGK--PAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HHHHHHHHHHhccCCCCEEEECCCCCcc--cCcchHHHHHHHhcCCCCEEEEEcc
Confidence 01469999986544321 2233345888899999999887543
|
|
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0044 Score=54.19 Aligned_cols=89 Identities=13% Similarity=0.116 Sum_probs=74.5
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHcc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-
Q 048309 56 RKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQT--GCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP- 132 (288)
Q Consensus 56 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~- 132 (288)
-.+..+++.+.++++...+|.--|.|+.+..+.++. ..+++|+|-++.+++.|+++....+ +++.++..++.++.
T Consensus 10 VLl~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~--~r~~~v~~~F~~l~~ 87 (314)
T COG0275 10 VLLNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD--GRVTLVHGNFANLAE 87 (314)
T ss_pred hHHHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC--CcEEEEeCcHHHHHH
Confidence 356788899999999999999999999999999882 3679999999999999999987755 58999999988754
Q ss_pred -----CCCCCCEEEEccch
Q 048309 133 -----KAKKYDRIISCEMM 146 (288)
Q Consensus 133 -----~~~~fD~I~~~~~l 146 (288)
..+++|.|+....+
T Consensus 88 ~l~~~~i~~vDGiL~DLGV 106 (314)
T COG0275 88 ALKELGIGKVDGILLDLGV 106 (314)
T ss_pred HHHhcCCCceeEEEEeccC
Confidence 23588988876443
|
|
| >COG3129 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0037 Score=52.53 Aligned_cols=97 Identities=18% Similarity=0.278 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHcC---CCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHc-CCCCceEEEEcc
Q 048309 53 AQMRKHSLLIEKAR---VSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEA-GLQDHIRLYLCD 127 (288)
Q Consensus 53 a~~~~~~~l~~~~~---~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~-g~~~~v~~~~~d 127 (288)
-+...+..++.... ..+..++||||.|.-..--.+-.+ ++.+.+|.|+++..++.|+..+..+ ++...+++....
T Consensus 59 dYih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk 138 (292)
T COG3129 59 DYIHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQK 138 (292)
T ss_pred HHHHHHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEecc
Confidence 33344444444332 124567899999876554444444 8999999999999999999999887 676667776653
Q ss_pred cCC--CC----CCCCCCEEEEccchhhh
Q 048309 128 YRQ--LP----KAKKYDRIISCEMMEAV 149 (288)
Q Consensus 128 ~~~--~~----~~~~fD~I~~~~~l~~~ 149 (288)
-.+ ++ ..+.||+.+|+..+|..
T Consensus 139 ~~~~if~giig~nE~yd~tlCNPPFh~s 166 (292)
T COG3129 139 DSDAIFNGIIGKNERYDATLCNPPFHDS 166 (292)
T ss_pred CccccccccccccceeeeEecCCCcchh
Confidence 332 11 46899999999988754
|
|
| >PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2 | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0019 Score=59.10 Aligned_cols=100 Identities=18% Similarity=0.208 Sum_probs=77.8
Q ss_pred CCCEEEEECCcccHHHHHHHHc-c-CCEEEEEcCCHHHHHHHHHHHHHcCCCC-ceEEEEcccCCCC--CCCCCCEEEEc
Q 048309 69 KEHEVLEIGCGWGTFAIEVVRQ-T-GCNYTGITLSAEQMKYAEMKVNEAGLQD-HIRLYLCDYRQLP--KAKKYDRIISC 143 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~~la~~-~-~~~v~giD~s~~~~~~a~~~~~~~g~~~-~v~~~~~d~~~~~--~~~~fD~I~~~ 143 (288)
.+.++||.=+|+|.=++.++.. . ..+|+.-|+|+++++..+++++.+++.. ++++...|+..+- ....||+|=..
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDlD 128 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDLD 128 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE-
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEeC
Confidence 3568999999999999998887 3 3689999999999999999999999976 6899999998764 66889999764
Q ss_pred cchhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 144 EMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 144 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
. + ..+..++..+.+.++.||.+.++
T Consensus 129 P----f--GSp~pfldsA~~~v~~gGll~vT 153 (377)
T PF02005_consen 129 P----F--GSPAPFLDSALQAVKDGGLLCVT 153 (377)
T ss_dssp -----S--S--HHHHHHHHHHEEEEEEEEEE
T ss_pred C----C--CCccHhHHHHHHHhhcCCEEEEe
Confidence 2 2 34577888899999999999984
|
1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: |
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.007 Score=51.92 Aligned_cols=104 Identities=21% Similarity=0.266 Sum_probs=70.9
Q ss_pred CCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHH-----HHcCCCCceEEEEcccCCCC----CCCC-CC
Q 048309 69 KEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKV-----NEAGLQDHIRLYLCDYRQLP----KAKK-YD 138 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~-----~~~g~~~~v~~~~~d~~~~~----~~~~-fD 138 (288)
....|||+|+|+|-.++..+...+.+|+.-|+... ++..+.+. ..+.+...+.+...+....+ .... +|
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~-~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~D 164 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLLGAEVVLTDLPKV-VENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFD 164 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHhcceeccCCchhh-HHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCccc
Confidence 35579999999998888888777889999996443 33333222 22222235666655554432 2233 99
Q ss_pred EEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 139 RIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 139 ~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
+|++..++.+- ...+.++.-+..+|..+|.+++..
T Consensus 165 lilasDvvy~~--~~~e~Lv~tla~ll~~~~~i~l~~ 199 (248)
T KOG2793|consen 165 LILASDVVYEE--ESFEGLVKTLAFLLAKDGTIFLAY 199 (248)
T ss_pred EEEEeeeeecC--CcchhHHHHHHHHHhcCCeEEEEE
Confidence 99999998876 677888888888998899666543
|
|
| >COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.011 Score=56.16 Aligned_cols=115 Identities=14% Similarity=0.201 Sum_probs=83.5
Q ss_pred HHHHHHcCCCCCCEEEEECCcccHHHHHHHHcc-----CCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-
Q 048309 59 SLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQT-----GCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP- 132 (288)
Q Consensus 59 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-----~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~- 132 (288)
..+++.+.+.+..+|.|..||+|++.....+.. ...++|.|+++.....|+.+.--+|+..++....+|...-+
T Consensus 176 ~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~~~ 255 (489)
T COG0286 176 ELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLSNPK 255 (489)
T ss_pred HHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccccCCc
Confidence 445555566677899999999999877766541 26799999999999999999988887544567777666544
Q ss_pred C-----CCCCCEEEEccchhh---h--------------------CHhhHHHHHHHHhcccccCcEEEE
Q 048309 133 K-----AKKYDRIISCEMMEA---V--------------------GHEYMEEYFGCCESLLAKDGLLVL 173 (288)
Q Consensus 133 ~-----~~~fD~I~~~~~l~~---~--------------------~~~~~~~~l~~~~~~LkpgG~l~~ 173 (288)
. .+.||.|+++..+.- . .......+++.+...|+|||+..+
T Consensus 256 ~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aai 324 (489)
T COG0286 256 HDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAI 324 (489)
T ss_pred ccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEE
Confidence 2 256999999865530 0 011226788999999999886554
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0018 Score=60.35 Aligned_cols=99 Identities=16% Similarity=0.319 Sum_probs=65.7
Q ss_pred CEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEccc-CCCC-CCCCCCEEEEccchhh
Q 048309 71 HEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDY-RQLP-KAKKYDRIISCEMMEA 148 (288)
Q Consensus 71 ~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~-~~~~-~~~~fD~I~~~~~l~~ 148 (288)
..|+|+..|.|+++..|...+ |......|..-.-.-..+-+.|+ +-.. .|. +.++ -+.+||+|.+.+.+..
T Consensus 367 RNVMDMnAg~GGFAAAL~~~~---VWVMNVVP~~~~ntL~vIydRGL---IG~y-hDWCE~fsTYPRTYDLlHA~~lfs~ 439 (506)
T PF03141_consen 367 RNVMDMNAGYGGFAAALIDDP---VWVMNVVPVSGPNTLPVIYDRGL---IGVY-HDWCEAFSTYPRTYDLLHADGLFSL 439 (506)
T ss_pred eeeeeecccccHHHHHhccCC---ceEEEecccCCCCcchhhhhccc---chhc-cchhhccCCCCcchhheehhhhhhh
Confidence 469999999999999998752 44444333311111122333444 2222 222 2234 4589999999998887
Q ss_pred h-CHhhHHHHHHHHhcccccCcEEEEEee
Q 048309 149 V-GHEYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 149 ~-~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
. ...++..++-++-|+|+|||.+++.+.
T Consensus 440 ~~~rC~~~~illEmDRILRP~G~~iiRD~ 468 (506)
T PF03141_consen 440 YKDRCEMEDILLEMDRILRPGGWVIIRDT 468 (506)
T ss_pred hcccccHHHHHHHhHhhcCCCceEEEecc
Confidence 6 345678899999999999999999553
|
; GO: 0008168 methyltransferase activity |
| >KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0034 Score=53.00 Aligned_cols=106 Identities=14% Similarity=0.080 Sum_probs=75.7
Q ss_pred HHcCCCCCCEEEEECCcccHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC----CCCC
Q 048309 63 EKARVSKEHEVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP----KAKK 136 (288)
Q Consensus 63 ~~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~----~~~~ 136 (288)
+.+.++|+.+||-+|.++|+...++..- +..-|++++.|+-.=......++.. .||-.+..|+.... .-..
T Consensus 150 dnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR---tNiiPIiEDArhP~KYRmlVgm 226 (317)
T KOG1596|consen 150 DNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR---TNIIPIIEDARHPAKYRMLVGM 226 (317)
T ss_pred cceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc---CCceeeeccCCCchheeeeeee
Confidence 5567889999999999999998888765 5567999999876544443333332 57888888887643 3357
Q ss_pred CCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 137 YDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 137 fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
.|+|++.-. .+....-+.-++...||+||-++++-
T Consensus 227 VDvIFaDva----qpdq~RivaLNA~~FLk~gGhfvisi 261 (317)
T KOG1596|consen 227 VDVIFADVA----QPDQARIVALNAQYFLKNGGHFVISI 261 (317)
T ss_pred EEEEeccCC----CchhhhhhhhhhhhhhccCCeEEEEE
Confidence 888887522 11334445567789999999999853
|
|
| >TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.031 Score=48.69 Aligned_cols=125 Identities=18% Similarity=0.199 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCC--CCceEEEEcccCC
Q 048309 53 AQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGL--QDHIRLYLCDYRQ 130 (288)
Q Consensus 53 a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~--~~~v~~~~~d~~~ 130 (288)
...+.++..+...-......|+.+|||-=.-...+....+..++=+|. |+.++.-++.+.+.+. +.+.+++..|+.+
T Consensus 65 ~Rtr~~D~~i~~~~~~g~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~ 143 (260)
T TIGR00027 65 VRTRFFDDFLLAAVAAGIRQVVILGAGLDTRAYRLPWPDGTRVFEVDQ-PAVLAFKEKVLAELGAEPPAHRRAVPVDLRQ 143 (260)
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEeCCccccHHHhcCCCCCCeEEECCC-hHHHHHHHHHHHHcCCCCCCceEEeccCchh
Confidence 344555555554322234579999999866665553323456777774 6667766777775442 3578899999862
Q ss_pred -CC---CC-----CCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecC
Q 048309 131 -LP---KA-----KKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSST 178 (288)
Q Consensus 131 -~~---~~-----~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 178 (288)
+. .. +..-++++-+++.+++++...++++.+.+...||+.+++.....
T Consensus 144 ~w~~~L~~~gfd~~~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~~ 200 (260)
T TIGR00027 144 DWPAALAAAGFDPTAPTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYVRP 200 (260)
T ss_pred hHHHHHHhCCCCCCCCeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEeccc
Confidence 11 11 23447888899999998999999999999988999999876543
|
This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants. |
| >KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.019 Score=51.64 Aligned_cols=115 Identities=13% Similarity=0.094 Sum_probs=81.6
Q ss_pred cCCCCCCEEEEECCcccHHHHHHHHc-cC----CEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-------
Q 048309 65 ARVSKEHEVLEIGCGWGTFAIEVVRQ-TG----CNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP------- 132 (288)
Q Consensus 65 ~~~~~~~~vLDiGcG~G~~~~~la~~-~~----~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~------- 132 (288)
++++|+.+|||+....|.=+..+.+. .. ..|++-|.++.-+...........- .++.+...|+...+
T Consensus 151 L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~-~~~~v~~~~~~~~p~~~~~~~ 229 (375)
T KOG2198|consen 151 LGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPS-PNLLVTNHDASLFPNIYLKDG 229 (375)
T ss_pred cccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCC-cceeeecccceeccccccccC
Confidence 46789999999999999988888775 22 2799999999988888777754433 35666666665544
Q ss_pred ---CCCCCCEEEEccch------hhhC------H---------hhHHHHHHHHhcccccCcEEEEEeecCCC
Q 048309 133 ---KAKKYDRIISCEMM------EAVG------H---------EYMEEYFGCCESLLAKDGLLVLQFSSTPD 180 (288)
Q Consensus 133 ---~~~~fD~I~~~~~l------~~~~------~---------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 180 (288)
....||-|++.-.. .+.+ + .-...++.+..++||+||.++-++.+...
T Consensus 230 ~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnp 301 (375)
T KOG2198|consen 230 NDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNP 301 (375)
T ss_pred chhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCc
Confidence 22469999985322 2210 0 11245788899999999999998877543
|
|
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0099 Score=53.73 Aligned_cols=103 Identities=16% Similarity=0.193 Sum_probs=65.4
Q ss_pred HHHcCCCCCCEEEEECCcc-cHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CCCCCC
Q 048309 62 IEKARVSKEHEVLEIGCGW-GTFAIEVVRQTGC-NYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAKKYD 138 (288)
Q Consensus 62 ~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~~fD 138 (288)
+......++.+||-+|||. |..+..+++..+. +|+++|.+++.++.+++. |...-+.....++.+.. ..+.+|
T Consensus 162 l~~~~~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~l----Ga~~vi~~~~~~~~~~~~~~g~~D 237 (343)
T PRK09880 162 AHQAGDLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREM----GADKLVNPQNDDLDHYKAEKGYFD 237 (343)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHc----CCcEEecCCcccHHHHhccCCCCC
Confidence 3444555788999999885 8888888887666 699999999888877653 32100111111222222 224589
Q ss_pred EEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEee
Q 048309 139 RIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 139 ~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
+|+-.-. . ...++.+.+.|++||++++...
T Consensus 238 ~vid~~G-----~---~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 238 VSFEVSG-----H---PSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred EEEECCC-----C---HHHHHHHHHHhhcCCEEEEEcc
Confidence 8886422 1 2345666788999999987543
|
|
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.0038 Score=49.22 Aligned_cols=43 Identities=16% Similarity=0.237 Sum_probs=39.5
Q ss_pred CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 133 KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 133 ~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
.+++.|+|++..+++|++-+.-..+++.|++.|||||.+-+..
T Consensus 44 ~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAv 86 (185)
T COG4627 44 EDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAV 86 (185)
T ss_pred CCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEc
Confidence 5689999999999999988888999999999999999999843
|
|
| >KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.013 Score=53.04 Aligned_cols=138 Identities=12% Similarity=0.132 Sum_probs=95.7
Q ss_pred hhhcCCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccC-CEEEEEcCCHHHHHHHHHHH-----
Q 048309 39 SYHYDLDEDEDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTG-CNYTGITLSAEQMKYAEMKV----- 112 (288)
Q Consensus 39 a~~Yd~~~~~~l~~a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~giD~s~~~~~~a~~~~----- 112 (288)
..||.........+.+...+..+.+.+.+.++....|+|+|.|.....++...+ ..-+|+++.....+.+..+.
T Consensus 162 ~~hYk~~ss~~YGE~~~~ql~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk 241 (419)
T KOG3924|consen 162 NQHYKSFSSETYGETQLEQLRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKK 241 (419)
T ss_pred HHhhccccccchhhhhHHHHHHHHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHH
Confidence 446666656677788888899999999999999999999999999988877633 34677776555444333222
Q ss_pred --HHcCC-CCceEEEEcccCCCC----CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCC
Q 048309 113 --NEAGL-QDHIRLYLCDYRQLP----KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTP 179 (288)
Q Consensus 113 --~~~g~-~~~v~~~~~d~~~~~----~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 179 (288)
+..|- +..++.+.+++.+.. .....++|+++++..- ++..--+.++..-+++|-+++-...-.+
T Consensus 242 ~~k~fGk~~~~~~~i~gsf~~~~~v~eI~~eatvi~vNN~~Fd---p~L~lr~~eil~~ck~gtrIiS~~~L~~ 312 (419)
T KOG3924|consen 242 LMKHFGKKPNKIETIHGSFLDPKRVTEIQTEATVIFVNNVAFD---PELKLRSKEILQKCKDGTRIISSKPLVP 312 (419)
T ss_pred HHHHhCCCcCceeecccccCCHHHHHHHhhcceEEEEecccCC---HHHHHhhHHHHhhCCCcceEeccccccc
Confidence 22232 346788888887644 3467889998876432 2333334488888899999887544333
|
|
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.02 Score=51.74 Aligned_cols=123 Identities=11% Similarity=0.060 Sum_probs=64.8
Q ss_pred HHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc----------c-------CCEEEEEcCCHH-HHHHHHHHHHHc---C
Q 048309 58 HSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ----------T-------GCNYTGITLSAE-QMKYAEMKVNEA---G 116 (288)
Q Consensus 58 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~----------~-------~~~v~giD~s~~-~~~~a~~~~~~~---g 116 (288)
+..++........-+|+|+||..|..+..+... . .-+|.--|+=.. .-...+...... .
T Consensus 5 i~~~~~~~~~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~ 84 (334)
T PF03492_consen 5 IKELYNSSNNPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLK 84 (334)
T ss_dssp HHHHHHSTTTTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHH
T ss_pred HHHHHhcCCCCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccC
Confidence 334443334445578999999999988776542 0 126777774221 211111111110 0
Q ss_pred CCCc--eEEEEcccCCCC-CCCCCCEEEEccchhhhCH-------------------------------------hhHHH
Q 048309 117 LQDH--IRLYLCDYRQLP-KAKKYDRIISCEMMEAVGH-------------------------------------EYMEE 156 (288)
Q Consensus 117 ~~~~--v~~~~~d~~~~~-~~~~fD~I~~~~~l~~~~~-------------------------------------~~~~~ 156 (288)
-..+ +.-+.+.+..-- |.++.|++++..++|+++. .+...
T Consensus 85 ~~~~~f~~gvpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~ 164 (334)
T PF03492_consen 85 KFRNYFVSGVPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSS 164 (334)
T ss_dssp HTTSEEEEEEES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHH
T ss_pred CCceEEEEecCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHH
Confidence 0012 233445555433 7899999999999987631 22333
Q ss_pred HHHHHhcccccCcEEEEEeecCCC
Q 048309 157 YFGCCESLLAKDGLLVLQFSSTPD 180 (288)
Q Consensus 157 ~l~~~~~~LkpgG~l~~~~~~~~~ 180 (288)
+|+.=.+-|+|||++++...+.++
T Consensus 165 FL~~Ra~ELv~GG~mvl~~~gr~~ 188 (334)
T PF03492_consen 165 FLKARAEELVPGGRMVLTFLGRDE 188 (334)
T ss_dssp HHHHHHHHEEEEEEEEEEEEE-ST
T ss_pred HHHHhhheeccCcEEEEEEeeccc
Confidence 555556788999999999888776
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.0078 Score=52.44 Aligned_cols=108 Identities=20% Similarity=0.258 Sum_probs=81.5
Q ss_pred CCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHc--CC-CCceEEEEcccCCCC---CCCCCCE
Q 048309 67 VSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEA--GL-QDHIRLYLCDYRQLP---KAKKYDR 139 (288)
Q Consensus 67 ~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~--g~-~~~v~~~~~d~~~~~---~~~~fD~ 139 (288)
+..+++||-||.|.|...+..++| .-.++..+|++...++..++..... |. .+++.+..+|...+- ..++||+
T Consensus 119 ~~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dV 198 (337)
T KOG1562|consen 119 HPNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDV 198 (337)
T ss_pred CCCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceE
Confidence 345679999999999999998888 3347999999999999888877643 22 257899999887654 4689999
Q ss_pred EEEccchhhhCH--hhHHHHHHHHhcccccCcEEEEE
Q 048309 140 IISCEMMEAVGH--EYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 140 I~~~~~l~~~~~--~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
|+...+=--.+. --...+++.+.+.||+||+++..
T Consensus 199 ii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q 235 (337)
T KOG1562|consen 199 IITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQ 235 (337)
T ss_pred EEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEe
Confidence 997533111111 12466888999999999998874
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.04 Score=50.14 Aligned_cols=99 Identities=16% Similarity=0.138 Sum_probs=69.1
Q ss_pred CCCCCEEEEECCcc-cHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccC--------CCCCCCC
Q 048309 67 VSKEHEVLEIGCGW-GTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYR--------QLPKAKK 136 (288)
Q Consensus 67 ~~~~~~vLDiGcG~-G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~--------~~~~~~~ 136 (288)
..++.+|+=+|||+ |.++..+++. ...+|+.+|.++..++.|++.... ..+..... .......
T Consensus 166 ~~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~-------~~~~~~~~~~~~~~~~~~t~g~g 238 (350)
T COG1063 166 VRPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGA-------DVVVNPSEDDAGAEILELTGGRG 238 (350)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCC-------eEeecCccccHHHHHHHHhCCCC
Confidence 34455999999998 8888888887 457899999999999999875321 22222111 1112347
Q ss_pred CCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCCC
Q 048309 137 YDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPD 180 (288)
Q Consensus 137 fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 180 (288)
+|+++-.-. ....+..+.+.++|||.+++.-.....
T Consensus 239 ~D~vie~~G--------~~~~~~~ai~~~r~gG~v~~vGv~~~~ 274 (350)
T COG1063 239 ADVVIEAVG--------SPPALDQALEALRPGGTVVVVGVYGGE 274 (350)
T ss_pred CCEEEECCC--------CHHHHHHHHHHhcCCCEEEEEeccCCc
Confidence 999986533 134777888999999999987665444
|
|
| >PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.035 Score=46.30 Aligned_cols=115 Identities=8% Similarity=0.058 Sum_probs=67.4
Q ss_pred HHHHHHcCCCCCCEEEEECCcccHHHHHHHHc---cCCEEEEEcCCHHHHHHHHHHHHH---------------------
Q 048309 59 SLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ---TGCNYTGITLSAEQMKYAEMKVNE--------------------- 114 (288)
Q Consensus 59 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~---~~~~v~giD~s~~~~~~a~~~~~~--------------------- 114 (288)
++.+..+....+-++.|-.||.|++..-+.-- .-..|.|-|+++++++.|++++.-
T Consensus 41 qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~ 120 (246)
T PF11599_consen 41 QRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYG 120 (246)
T ss_dssp HHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcC
Confidence 33344444455678999999999987665432 224799999999999999876532
Q ss_pred --------------------cCCCCceEEEEcccCCC------CCCCCCCEEEEccchhhh-------CHhhHHHHHHHH
Q 048309 115 --------------------AGLQDHIRLYLCDYRQL------PKAKKYDRIISCEMMEAV-------GHEYMEEYFGCC 161 (288)
Q Consensus 115 --------------------~g~~~~v~~~~~d~~~~------~~~~~fD~I~~~~~l~~~-------~~~~~~~~l~~~ 161 (288)
.|-.....+.+.|+.+. +.....|+|+..-...++ +..-...+++.+
T Consensus 121 kps~~eAl~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l 200 (246)
T PF11599_consen 121 KPSHAEALESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSL 200 (246)
T ss_dssp -HHHHHHHHHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHH
Confidence 11112367888888873 234557999997544333 223467899999
Q ss_pred hcccccCcEEEE
Q 048309 162 ESLLAKDGLLVL 173 (288)
Q Consensus 162 ~~~LkpgG~l~~ 173 (288)
+.+|-+++++.+
T Consensus 201 ~~vLp~~sVV~v 212 (246)
T PF11599_consen 201 APVLPERSVVAV 212 (246)
T ss_dssp HCCS-TT-EEEE
T ss_pred HhhCCCCcEEEE
Confidence 999965566665
|
This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A. |
| >KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.0085 Score=52.93 Aligned_cols=110 Identities=19% Similarity=0.185 Sum_probs=74.7
Q ss_pred HHHHHHcCCCCCCEEEEECCcc-cHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEccc---CCC--
Q 048309 59 SLLIEKARVSKEHEVLEIGCGW-GTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDY---RQL-- 131 (288)
Q Consensus 59 ~~l~~~~~~~~~~~vLDiGcG~-G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~---~~~-- 131 (288)
-+.......+.|.+||-+|+|+ |..+...|+. ...+|+.+|+++..++.|++ + |.+ ........ .++
T Consensus 159 ~HAcr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~---Ga~--~~~~~~~~~~~~~~~~ 232 (354)
T KOG0024|consen 159 VHACRRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-F---GAT--VTDPSSHKSSPQELAE 232 (354)
T ss_pred hhhhhhcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-h---CCe--EEeeccccccHHHHHH
Confidence 3456667788999999999997 7777777777 55689999999999999988 3 321 11111111 111
Q ss_pred --C---CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCCCcc
Q 048309 132 --P---KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPDAR 182 (288)
Q Consensus 132 --~---~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~ 182 (288)
. ....+|+.+....++ ..++.....+++||++++..+..+...
T Consensus 233 ~v~~~~g~~~~d~~~dCsG~~--------~~~~aai~a~r~gGt~vlvg~g~~~~~ 280 (354)
T KOG0024|consen 233 LVEKALGKKQPDVTFDCSGAE--------VTIRAAIKATRSGGTVVLVGMGAEEIQ 280 (354)
T ss_pred HHHhhccccCCCeEEEccCch--------HHHHHHHHHhccCCEEEEeccCCCccc
Confidence 1 224589988764443 233444578999999888877765543
|
|
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.0027 Score=47.14 Aligned_cols=39 Identities=31% Similarity=0.571 Sum_probs=31.7
Q ss_pred CCCEEEEccchhhh----CHhhHHHHHHHHhcccccCcEEEEE
Q 048309 136 KYDRIISCEMMEAV----GHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 136 ~fD~I~~~~~l~~~----~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
.||+|+|..+.-++ +++-+..+++++++.|+|||.|++.
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilE 43 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILE 43 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEe
Confidence 48999998876544 5566889999999999999999994
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.077 Score=48.64 Aligned_cols=48 Identities=10% Similarity=0.146 Sum_probs=36.2
Q ss_pred CCCCCCEEEEccchhhhCH------------------------------------hhHHHHHHHHhcccccCcEEEEEee
Q 048309 133 KAKKYDRIISCEMMEAVGH------------------------------------EYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 133 ~~~~fD~I~~~~~l~~~~~------------------------------------~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
|.++.+++++..++|+++. .|...+++.=.+-|.|||.+++...
T Consensus 159 P~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~mvl~~~ 238 (386)
T PLN02668 159 PARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKRGGAMFLVCL 238 (386)
T ss_pred CCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEEe
Confidence 6789999999999988741 1233355555678899999999988
Q ss_pred cCCC
Q 048309 177 STPD 180 (288)
Q Consensus 177 ~~~~ 180 (288)
+.+.
T Consensus 239 Gr~~ 242 (386)
T PLN02668 239 GRTS 242 (386)
T ss_pred cCCC
Confidence 7754
|
|
| >PHA01634 hypothetical protein | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.033 Score=42.52 Aligned_cols=79 Identities=10% Similarity=-0.014 Sum_probs=55.1
Q ss_pred HHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CCCCCC
Q 048309 60 LLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAKKYD 138 (288)
Q Consensus 60 ~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~~fD 138 (288)
+-...++. .+++|+|||.+.|..+++++......|++++.++...+..+++++...+-++. ....+++ .-+.||
T Consensus 20 ~~Y~~idv-k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nnI~DK~----v~~~eW~~~Y~~~D 94 (156)
T PHA01634 20 HAYGMLNV-YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFNICDKA----VMKGEWNGEYEDVD 94 (156)
T ss_pred HHhhheee-cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhheeeece----eecccccccCCCcc
Confidence 33444444 47799999999999999998876668999999999999999987764321111 1111333 346788
Q ss_pred EEEEc
Q 048309 139 RIISC 143 (288)
Q Consensus 139 ~I~~~ 143 (288)
+.+..
T Consensus 95 i~~iD 99 (156)
T PHA01634 95 IFVMD 99 (156)
T ss_pred eEEEE
Confidence 77653
|
|
| >COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.06 Score=48.51 Aligned_cols=98 Identities=15% Similarity=0.130 Sum_probs=77.8
Q ss_pred CCEEEEECCcccHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC--CCCCCCEEEEccch
Q 048309 70 EHEVLEIGCGWGTFAIEVVRQTGC-NYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP--KAKKYDRIISCEMM 146 (288)
Q Consensus 70 ~~~vLDiGcG~G~~~~~la~~~~~-~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~--~~~~fD~I~~~~~l 146 (288)
+.+|+|-=||+|.=++.++...+. +|+.-|+||.+++.++++++.+.. .+..++..|+..+- ....||+|=...
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~-~~~~v~n~DAN~lm~~~~~~fd~IDiDP-- 129 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSG-EDAEVINKDANALLHELHRAFDVIDIDP-- 129 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCc-ccceeecchHHHHHHhcCCCccEEecCC--
Confidence 679999999999999999888443 899999999999999999998833 35677778887755 347899886532
Q ss_pred hhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 147 EAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 147 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
+ ..+..++..+.+.++.||.+.++
T Consensus 130 --F--GSPaPFlDaA~~s~~~~G~l~vT 153 (380)
T COG1867 130 --F--GSPAPFLDAALRSVRRGGLLCVT 153 (380)
T ss_pred --C--CCCchHHHHHHHHhhcCCEEEEE
Confidence 2 34466777788888999999884
|
|
| >KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.011 Score=49.57 Aligned_cols=95 Identities=12% Similarity=0.166 Sum_probs=68.0
Q ss_pred CCEEEEECCcccHHHHHHHHc-cC------C---EEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-------
Q 048309 70 EHEVLEIGCGWGTFAIEVVRQ-TG------C---NYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP------- 132 (288)
Q Consensus 70 ~~~vLDiGcG~G~~~~~la~~-~~------~---~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~------- 132 (288)
-.+++|+....|.++..++++ .. . .+++||+.+- +.+ ..|.-+++|+....
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~M-----------aPI-~GV~qlq~DIT~~stae~Ii~ 109 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPM-----------API-EGVIQLQGDITSASTAEAIIE 109 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccC-----------Ccc-CceEEeecccCCHhHHHHHHH
Confidence 368999999999999999886 21 1 2999998652 234 35788899997743
Q ss_pred --CCCCCCEEEEccc-----hhhh----CHhhHHHHHHHHhcccccCcEEEEEee
Q 048309 133 --KAKKYDRIISCEM-----MEAV----GHEYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 133 --~~~~fD~I~~~~~-----l~~~----~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
..++.|+|+|.++ +|.+ ..+-+.+.+.-...+|+|||.|+..-+
T Consensus 110 hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKif 164 (294)
T KOG1099|consen 110 HFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIF 164 (294)
T ss_pred HhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhh
Confidence 2458999999864 3333 223345567777899999999987443
|
|
| >KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.03 Score=52.57 Aligned_cols=102 Identities=15% Similarity=0.270 Sum_probs=73.7
Q ss_pred CCEEEEECCcccHHHHHHHH---c--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCC-CCCCCEEEEc
Q 048309 70 EHEVLEIGCGWGTFAIEVVR---Q--TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPK-AKKYDRIISC 143 (288)
Q Consensus 70 ~~~vLDiGcG~G~~~~~la~---~--~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~-~~~fD~I~~~ 143 (288)
...|+=+|.|-|-+.....+ . ...++++|+-+|.++-..+. ....++.++|+++-.|+.++.+ ..+.|++++-
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VSE 446 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNFECWDNRVTIISSDMRKWNAPREQADIIVSE 446 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hchhhhcCeeEEEeccccccCCchhhccchHHH
Confidence 34678899999977554433 2 35689999999999877665 3344556789999999999995 4899999873
Q ss_pred cchhhhCH-hhHHHHHHHHhcccccCcEEEE
Q 048309 144 EMMEAVGH-EYMEEYFGCCESLLAKDGLLVL 173 (288)
Q Consensus 144 ~~l~~~~~-~~~~~~l~~~~~~LkpgG~l~~ 173 (288)
.+.-++. +--.+.+..+...|||+|..+=
T Consensus 447 -LLGSFGDNELSPECLDG~q~fLkpdgIsIP 476 (649)
T KOG0822|consen 447 -LLGSFGDNELSPECLDGAQKFLKPDGISIP 476 (649)
T ss_pred -hhccccCccCCHHHHHHHHhhcCCCceEcc
Confidence 2222221 3346788888999999986653
|
|
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.077 Score=48.81 Aligned_cols=109 Identities=23% Similarity=0.254 Sum_probs=71.0
Q ss_pred HHcCCCCCCEEEEECCcc-cHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcc-c----CCCCCCC
Q 048309 63 EKARVSKEHEVLEIGCGW-GTFAIEVVRQTGC-NYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCD-Y----RQLPKAK 135 (288)
Q Consensus 63 ~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d-~----~~~~~~~ 135 (288)
....+.++.+||.+|||. |..+..+++..+. +++++|.+++..+.+++.. +. ..+.....+ . .++....
T Consensus 178 ~~~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~---~~-~vi~~~~~~~~~~~l~~~~~~~ 253 (386)
T cd08283 178 ELAEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHL---GA-ETINFEEVDDVVEALRELTGGR 253 (386)
T ss_pred hhccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC---Cc-EEEcCCcchHHHHHHHHHcCCC
Confidence 455677889999999998 8899999988665 6999999999988887652 11 111111111 1 1111334
Q ss_pred CCCEEEEccch-----------hhh--CHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 136 KYDRIISCEMM-----------EAV--GHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 136 ~fD~I~~~~~l-----------~~~--~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
.+|+|+-.-.- .|. +..+....+.++.+.|+++|++++..
T Consensus 254 ~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 254 GPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred CCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 69999874211 111 11223557788889999999998864
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.043 Score=43.69 Aligned_cols=103 Identities=14% Similarity=0.125 Sum_probs=64.2
Q ss_pred CCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHH-HHHHHHHHcCCCCceEEEEcccCC-CC-CCCCCCEEEEccch
Q 048309 70 EHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMK-YAEMKVNEAGLQDHIRLYLCDYRQ-LP-KAKKYDRIISCEMM 146 (288)
Q Consensus 70 ~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~-~a~~~~~~~g~~~~v~~~~~d~~~-~~-~~~~fD~I~~~~~l 146 (288)
+++.+-+|+..-..-....++...+|..||-++--++ ..+.++ ..+...|+.. +. -.++||.+.|..++
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~~~~~dr~--------ssi~p~df~~~~~~y~~~fD~~as~~si 73 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQEEFRDRL--------SSILPVDFAKNWQKYAGSFDFAASFSSI 73 (177)
T ss_pred CceEEEEecCCchhhHHHHHcCCceEEEEeecccccCccccccc--------ccccHHHHHHHHHHhhccchhhheechh
Confidence 5678888888665544444445567888886542111 011110 1222223321 11 34789999999999
Q ss_pred hhhCH---------hhHHHHHHHHhcccccCcEEEEEeecCCC
Q 048309 147 EAVGH---------EYMEEYFGCCESLLAKDGLLVLQFSSTPD 180 (288)
Q Consensus 147 ~~~~~---------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 180 (288)
+|++- .--...+.++.++|||||.+++..+..++
T Consensus 74 Eh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~d 116 (177)
T PF03269_consen 74 EHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGTD 116 (177)
T ss_pred ccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCCc
Confidence 99722 12356788999999999999998776654
|
|
| >KOG2671 consensus Putative RNA methylase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.007 Score=53.76 Aligned_cols=114 Identities=15% Similarity=0.238 Sum_probs=84.1
Q ss_pred HHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHH-------HHHHHHHHcCC-CCceEEEEcccCCCC-
Q 048309 62 IEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMK-------YAEMKVNEAGL-QDHIRLYLCDYRQLP- 132 (288)
Q Consensus 62 ~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~-------~a~~~~~~~g~-~~~v~~~~~d~~~~~- 132 (288)
+..+..++|..|+|--.|||.+....|. .|+.|.|.|++-.++. ..+.++++.|. +.-+.++.+|....+
T Consensus 201 AN~Amv~pGdivyDPFVGTGslLvsaa~-FGa~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~ 279 (421)
T KOG2671|consen 201 ANQAMVKPGDIVYDPFVGTGSLLVSAAH-FGAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPL 279 (421)
T ss_pred hhhhccCCCCEEecCccccCceeeehhh-hcceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcch
Confidence 3444567999999999999999888776 6899999999998887 34567777774 334688999998877
Q ss_pred -CCCCCCEEEEccch------------------------hhhCH-------hhHHHHHHHHhcccccCcEEEEEee
Q 048309 133 -KAKKYDRIISCEMM------------------------EAVGH-------EYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 133 -~~~~fD~I~~~~~l------------------------~~~~~-------~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
....||+|+|.... .|.+. .-....+.-..+.|..||++++--.
T Consensus 280 rsn~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~p 355 (421)
T KOG2671|consen 280 RSNLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWLP 355 (421)
T ss_pred hhcceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEecC
Confidence 66789999997532 12211 1134456667788889999887433
|
|
| >cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.12 Score=46.17 Aligned_cols=97 Identities=18% Similarity=0.223 Sum_probs=64.9
Q ss_pred HcCCCCCCEEEEECCcc-cHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCC------CCCCCC
Q 048309 64 KARVSKEHEVLEIGCGW-GTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQ------LPKAKK 136 (288)
Q Consensus 64 ~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~------~~~~~~ 136 (288)
...+.++.+||..|+|. |..+..+++..+.+|++++.+++..+.+++ .|.. .++...-.. ....+.
T Consensus 160 ~~~~~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~~~~ 232 (338)
T cd08254 160 AGEVKPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKE----LGAD---EVLNSLDDSPKDKKAAGLGGG 232 (338)
T ss_pred ccCCCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH----hCCC---EEEcCCCcCHHHHHHHhcCCC
Confidence 33467788999988874 888888888878889999999988877754 2331 111111001 113467
Q ss_pred CCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 137 YDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 137 fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
+|+++.... ....++++.+.|+++|.++...
T Consensus 233 ~D~vid~~g--------~~~~~~~~~~~l~~~G~~v~~g 263 (338)
T cd08254 233 FDVIFDFVG--------TQPTFEDAQKAVKPGGRIVVVG 263 (338)
T ss_pred ceEEEECCC--------CHHHHHHHHHHhhcCCEEEEEC
Confidence 998885421 1345667779999999998754
|
This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio |
| >KOG1227 consensus Putative methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.0031 Score=54.95 Aligned_cols=103 Identities=14% Similarity=0.134 Sum_probs=76.0
Q ss_pred CCCEEEEECCcccHHHH-HHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCEEEEccchh
Q 048309 69 KEHEVLEIGCGWGTFAI-EVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMME 147 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~-~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~~~~~l~ 147 (288)
.+..|+|+-.|.|+++. .+.......|.++|.+|..++..++.++.+++..++.++.+|-....+....|.|.....-
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~~~~AdrVnLGLlP- 272 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKPRLRADRVNLGLLP- 272 (351)
T ss_pred ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccCccccchheeecccc-
Confidence 45889999999999998 5555455689999999999999999999988877788888888877778889988864221
Q ss_pred hhCHhhHHHHHHHHhcccccCc--EEEEEeec
Q 048309 148 AVGHEYMEEYFGCCESLLAKDG--LLVLQFSS 177 (288)
Q Consensus 148 ~~~~~~~~~~l~~~~~~LkpgG--~l~~~~~~ 177 (288)
.-++-.-.+..+|+|.| .+-++...
T Consensus 273 -----Sse~~W~~A~k~Lk~eggsilHIHenV 299 (351)
T KOG1227|consen 273 -----SSEQGWPTAIKALKPEGGSILHIHENV 299 (351)
T ss_pred -----ccccchHHHHHHhhhcCCcEEEEeccc
Confidence 11233333456777754 44444433
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.04 Score=48.59 Aligned_cols=58 Identities=17% Similarity=0.143 Sum_probs=47.6
Q ss_pred HHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHH
Q 048309 55 MRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNE 114 (288)
Q Consensus 55 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~ 114 (288)
...+.+++...- .+|..|||.-||+|+.+....+ .+.+.+|+|++++.++.|+++++.
T Consensus 195 ~~L~erlI~~~S-~~GD~VLDPF~GSGTT~~AA~~-lgR~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 195 EALLKRIILASS-NPGDIVLDPFAGSFTTGAVAKA-SGRKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred HHHHHHHHHHhC-CCCCEEEECCCCCcHHHHHHHH-cCCCEEEEeCCHHHHHHHHHHHHh
Confidence 345566666654 5789999999999999887666 488999999999999999999854
|
|
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.12 Score=46.52 Aligned_cols=96 Identities=15% Similarity=0.062 Sum_probs=63.8
Q ss_pred HHcCCCCCCEEEEECCcc-cHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCEEE
Q 048309 63 EKARVSKEHEVLEIGCGW-GTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRII 141 (288)
Q Consensus 63 ~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~ 141 (288)
.....+++.+||-.|+|. |..+..+++..+.+|++++.+++..+.+++ .|.. .++ |..+. ..+.+|+++
T Consensus 159 ~~~~~~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~----~Ga~---~vi--~~~~~-~~~~~d~~i 228 (329)
T TIGR02822 159 LRASLPPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALA----LGAA---SAG--GAYDT-PPEPLDAAI 228 (329)
T ss_pred HhcCCCCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH----hCCc---eec--ccccc-CcccceEEE
Confidence 446778899999999764 777788888777889999999887776655 3431 111 11111 124688765
Q ss_pred EccchhhhCHhhHHHHHHHHhcccccCcEEEEEee
Q 048309 142 SCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 142 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
-.... ...+....+.|++||++++.-.
T Consensus 229 ~~~~~--------~~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 229 LFAPA--------GGLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred ECCCc--------HHHHHHHHHhhCCCcEEEEEec
Confidence 43211 2356677789999999987543
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
| >KOG2920 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.0086 Score=51.96 Aligned_cols=104 Identities=18% Similarity=0.230 Sum_probs=63.2
Q ss_pred CCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHH-------HHH--HcCCCCceEEEEcccCCCC--CCC-
Q 048309 68 SKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEM-------KVN--EAGLQDHIRLYLCDYRQLP--KAK- 135 (288)
Q Consensus 68 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~-------~~~--~~g~~~~v~~~~~d~~~~~--~~~- 135 (288)
-.+++|||+|||.|...+.+.......+...|.+...++.-.- .+. ......-..+...+..+.. ..+
T Consensus 115 ~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~~t~~ 194 (282)
T KOG2920|consen 115 FSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFNHTER 194 (282)
T ss_pred ecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccchhhhccc
Confidence 3688999999999999998887644788888888877731110 000 0000001223333111211 112
Q ss_pred -CCCEEEEccchhhhCHhhHHHH-HHHHhcccccCcEEEE
Q 048309 136 -KYDRIISCEMMEAVGHEYMEEY-FGCCESLLAKDGLLVL 173 (288)
Q Consensus 136 -~fD~I~~~~~l~~~~~~~~~~~-l~~~~~~LkpgG~l~~ 173 (288)
.||+|.+..++.-. .....+ ......+++++|++++
T Consensus 195 ~~ydlIlsSetiy~~--~~~~~~~~~~r~~l~~~D~~~~~ 232 (282)
T KOG2920|consen 195 THYDLILSSETIYSI--DSLAVLYLLHRPCLLKTDGVFYV 232 (282)
T ss_pred cchhhhhhhhhhhCc--chhhhhHhhhhhhcCCccchhhh
Confidence 79999998887766 333333 4555677888998776
|
|
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.07 Score=48.38 Aligned_cols=98 Identities=16% Similarity=0.139 Sum_probs=61.8
Q ss_pred CCCCCCEEEEECCcc-cHHHHHHHHccCCEEEEEcC---CHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCEEE
Q 048309 66 RVSKEHEVLEIGCGW-GTFAIEVVRQTGCNYTGITL---SAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRII 141 (288)
Q Consensus 66 ~~~~~~~vLDiGcG~-G~~~~~la~~~~~~v~giD~---s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~ 141 (288)
...++.+||-+|+|. |.++..+++..+++|++++. +++..+.+++ .|.. .+.....+..+....+.+|+|+
T Consensus 169 ~~~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~----~Ga~-~v~~~~~~~~~~~~~~~~d~vi 243 (355)
T cd08230 169 PTWNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEE----LGAT-YVNSSKTPVAEVKLVGEFDLII 243 (355)
T ss_pred ccCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHH----cCCE-EecCCccchhhhhhcCCCCEEE
Confidence 356788999999886 88888888887779999986 5666665543 3431 1111111111111224689888
Q ss_pred EccchhhhCHhhHHHHHHHHhcccccCcEEEEEee
Q 048309 142 SCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 142 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
-... -...+.+..+.|++||.+++...
T Consensus 244 d~~g--------~~~~~~~~~~~l~~~G~~v~~G~ 270 (355)
T cd08230 244 EATG--------VPPLAFEALPALAPNGVVILFGV 270 (355)
T ss_pred ECcC--------CHHHHHHHHHHccCCcEEEEEec
Confidence 6432 12356677789999999887543
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.028 Score=50.51 Aligned_cols=99 Identities=24% Similarity=0.259 Sum_probs=64.1
Q ss_pred HHHcCCCCCCEEEEECCcc-cHHHHHHHHccCCE-EEEEcCCHHHHHHHHHHHHHcCCCCceEEEEc---ccC---CCCC
Q 048309 62 IEKARVSKEHEVLEIGCGW-GTFAIEVVRQTGCN-YTGITLSAEQMKYAEMKVNEAGLQDHIRLYLC---DYR---QLPK 133 (288)
Q Consensus 62 ~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~~-v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~---d~~---~~~~ 133 (288)
+..+...++.+||=+|+|. |..+..+++..+.+ |++++.+++..+.+++. |.. .++.. +.. +...
T Consensus 156 l~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~----ga~---~~i~~~~~~~~~~~~~~~ 228 (339)
T cd08239 156 LRRVGVSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKAL----GAD---FVINSGQDDVQEIRELTS 228 (339)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----CCC---EEEcCCcchHHHHHHHhC
Confidence 3556677899999999875 77788888876777 99999999887776543 331 12211 111 1112
Q ss_pred CCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 134 AKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 134 ~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
...+|+|+-... -...+....+.|+++|++++..
T Consensus 229 ~~~~d~vid~~g--------~~~~~~~~~~~l~~~G~~v~~g 262 (339)
T cd08239 229 GAGADVAIECSG--------NTAARRLALEAVRPWGRLVLVG 262 (339)
T ss_pred CCCCCEEEECCC--------CHHHHHHHHHHhhcCCEEEEEc
Confidence 347999985421 1223455568899999998743
|
MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at |
| >COG4301 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.16 Score=43.41 Aligned_cols=105 Identities=14% Similarity=0.143 Sum_probs=74.2
Q ss_pred CCCEEEEECCcccHHHHHHHHc-----cCCEEEEEcCCHHHHHHHHHHHH-Hc-CCCCceEEEEcccCCCC---CCCCCC
Q 048309 69 KEHEVLEIGCGWGTFAIEVVRQ-----TGCNYTGITLSAEQMKYAEMKVN-EA-GLQDHIRLYLCDYRQLP---KAKKYD 138 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~~la~~-----~~~~v~giD~s~~~~~~a~~~~~-~~-g~~~~v~~~~~d~~~~~---~~~~fD 138 (288)
.+..++|+|+|+..-+..+... ...+++-||+|+..++...+.+. .. ++ .+.-+++|.+..- +.++--
T Consensus 78 g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l--~v~~l~~~~~~~La~~~~~~~R 155 (321)
T COG4301 78 GACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGL--EVNALCGDYELALAELPRGGRR 155 (321)
T ss_pred CcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCC--eEeehhhhHHHHHhcccCCCeE
Confidence 4679999999998776665443 33589999999998865544443 32 33 3667777876522 323333
Q ss_pred EE-EEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 139 RI-ISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 139 ~I-~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
++ +...++..+++.+-..++.++...|+||-.+++..
T Consensus 156 l~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGv 193 (321)
T COG4301 156 LFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGV 193 (321)
T ss_pred EEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEec
Confidence 33 33456788888889999999999999999999843
|
|
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.044 Score=52.12 Aligned_cols=96 Identities=19% Similarity=0.211 Sum_probs=64.7
Q ss_pred CCCCEEEEECCcc-cHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCC----------------
Q 048309 68 SKEHEVLEIGCGW-GTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQ---------------- 130 (288)
Q Consensus 68 ~~~~~vLDiGcG~-G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~---------------- 130 (288)
.++.+|+=+|||. |..+..+++..++.|+++|.++...+.++.. |. +++..|..+
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~l----Ga----~~v~v~~~e~g~~~~gYa~~~s~~~ 233 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSM----GA----EFLELDFKEEGGSGDGYAKVMSEEF 233 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc----CC----eEEeccccccccccccceeecCHHH
Confidence 3578999999997 7778878777788999999999987766652 32 333333211
Q ss_pred -------CC-CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEE
Q 048309 131 -------LP-KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVL 173 (288)
Q Consensus 131 -------~~-~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~ 173 (288)
++ ....+|+|+..-.+..- +.+.-..++..+.+|||++++=
T Consensus 234 ~~~~~~~~~e~~~~~DIVI~TalipG~--~aP~Lit~emv~~MKpGsvIVD 282 (511)
T TIGR00561 234 IAAEMELFAAQAKEVDIIITTALIPGK--PAPKLITEEMVDSMKAGSVIVD 282 (511)
T ss_pred HHHHHHHHHHHhCCCCEEEECcccCCC--CCCeeehHHHHhhCCCCCEEEE
Confidence 11 12579999876544432 2333466777899999998663
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.063 Score=47.50 Aligned_cols=136 Identities=18% Similarity=0.147 Sum_probs=75.9
Q ss_pred HHHcCCCCCCEEEEEC-CcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEE-EcccCC-CC--CCCC
Q 048309 62 IEKARVSKEHEVLEIG-CGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLY-LCDYRQ-LP--KAKK 136 (288)
Q Consensus 62 ~~~~~~~~~~~vLDiG-cG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~-~~d~~~-~~--~~~~ 136 (288)
+...+..||++|--+| +|-|.++..+|+..+.+|++||-+..--+.+-+. .|-+.-+... ..|... +. .+.-
T Consensus 174 Lk~~g~~pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kkeea~~~---LGAd~fv~~~~d~d~~~~~~~~~dg~ 250 (360)
T KOG0023|consen 174 LKRSGLGPGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKEEAIKS---LGADVFVDSTEDPDIMKAIMKTTDGG 250 (360)
T ss_pred hHHcCCCCCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchhHHHHHHh---cCcceeEEecCCHHHHHHHHHhhcCc
Confidence 4556777999998888 5579999999999999999999987555555443 3321111111 111111 11 2344
Q ss_pred CCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCCCcccccccCchhhHhhhccCCCCCCCHHHHHHHH
Q 048309 137 YDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPDARYNEYRLSSDFIKEYIFPGGCLPSLSRITSAM 213 (288)
Q Consensus 137 fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~ 213 (288)
.|.+.+. + ...+..+..+||++|.+++... |.. +.........+.+....++..-+..+..+.+
T Consensus 251 ~~~v~~~-a---------~~~~~~~~~~lk~~Gt~V~vg~--p~~-~~~~~~~~lil~~~~I~GS~vG~~ket~E~L 314 (360)
T KOG0023|consen 251 IDTVSNL-A---------EHALEPLLGLLKVNGTLVLVGL--PEK-PLKLDTFPLILGRKSIKGSIVGSRKETQEAL 314 (360)
T ss_pred ceeeeec-c---------ccchHHHHHHhhcCCEEEEEeC--cCC-cccccchhhhcccEEEEeeccccHHHHHHHH
Confidence 4555432 1 2233445589999999998543 332 2212111222333344455566655555444
|
|
| >COG1565 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.073 Score=47.95 Aligned_cols=60 Identities=22% Similarity=0.285 Sum_probs=47.6
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc-----c----CCEEEEEcCCHHHHHHHHHHHHHc
Q 048309 56 RKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-----T----GCNYTGITLSAEQMKYAEMKVNEA 115 (288)
Q Consensus 56 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-----~----~~~v~giD~s~~~~~~a~~~~~~~ 115 (288)
..+.++++.+..+.+..++|||.|+|.++..+.+. + ..++..|++|++..+.=+++++..
T Consensus 64 ~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~ 132 (370)
T COG1565 64 EQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT 132 (370)
T ss_pred HHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence 33456667777777789999999999999888764 1 578999999999988877777654
|
|
| >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.11 Score=47.59 Aligned_cols=100 Identities=14% Similarity=0.104 Sum_probs=64.9
Q ss_pred HHHHcCCCCCCEEEEECCcc-cHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCC----C--
Q 048309 61 LIEKARVSKEHEVLEIGCGW-GTFAIEVVRQTGC-NYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQL----P-- 132 (288)
Q Consensus 61 l~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~----~-- 132 (288)
+.....++++.+||=.|+|. |..+..+++..+. +|+++|.+++..+.+++. |.. .++..+-.++ .
T Consensus 183 ~~~~~~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~----Ga~---~~i~~~~~~~~~~i~~~ 255 (371)
T cd08281 183 VVNTAGVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALAREL----GAT---ATVNAGDPNAVEQVREL 255 (371)
T ss_pred HHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHc----CCc---eEeCCCchhHHHHHHHH
Confidence 34555677889999999875 7888888887676 699999999988877542 331 2221111111 1
Q ss_pred CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 133 KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 133 ~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
..+.+|+|+-.-. -...+....+.|+++|++++..
T Consensus 256 ~~~g~d~vid~~G--------~~~~~~~~~~~l~~~G~iv~~G 290 (371)
T cd08281 256 TGGGVDYAFEMAG--------SVPALETAYEITRRGGTTVTAG 290 (371)
T ss_pred hCCCCCEEEECCC--------ChHHHHHHHHHHhcCCEEEEEc
Confidence 1236899885321 0234555668899999988754
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd |
| >PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.044 Score=47.44 Aligned_cols=89 Identities=26% Similarity=0.363 Sum_probs=56.8
Q ss_pred HHHHHHHcC-CCCCCEEEEECCcccHHHHHHHHc-c--------CCEEEEEcCCHHHHHHHHHHHHHc-----CCCCceE
Q 048309 58 HSLLIEKAR-VSKEHEVLEIGCGWGTFAIEVVRQ-T--------GCNYTGITLSAEQMKYAEMKVNEA-----GLQDHIR 122 (288)
Q Consensus 58 ~~~l~~~~~-~~~~~~vLDiGcG~G~~~~~la~~-~--------~~~v~giD~s~~~~~~a~~~~~~~-----g~~~~v~ 122 (288)
+....+..+ +..+-+|+|+|.|+|.++..++.. . ..+++.||+|+.+.+.-++++... ....++.
T Consensus 6 ~~~~~~~~~~p~~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~~~~~~~~~~~~i~ 85 (252)
T PF02636_consen 6 IAQMWEQLGRPSEPLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSEHAPKDTEFGDPIR 85 (252)
T ss_dssp HHHHHHHCT--SS-EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCCH---STTTCGCEE
T ss_pred HHHHHHHcCCCCcCcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhhhcccccccCCccc
Confidence 334455554 223469999999999999988774 1 258999999999988888776542 1223455
Q ss_pred EEEcccCCCCCCCCCCEEEEccchhhhC
Q 048309 123 LYLCDYRQLPKAKKYDRIISCEMMEAVG 150 (288)
Q Consensus 123 ~~~~d~~~~~~~~~fD~I~~~~~l~~~~ 150 (288)
+ ..++.+.+ ..-+|+++..+..+|
T Consensus 86 w-~~~l~~~p---~~~~iiaNE~~DAlP 109 (252)
T PF02636_consen 86 W-LDDLEEVP---FPGFIIANELFDALP 109 (252)
T ss_dssp E-ESSGGCS----CCEEEEEESSGGGS-
T ss_pred h-hhhhhccc---CCEEEEEeeehhcCc
Confidence 5 23333332 567888888888774
|
; PDB: 4F3N_A 1ZKD_B. |
| >KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.049 Score=49.17 Aligned_cols=58 Identities=19% Similarity=0.216 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHcCCC-CCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHH
Q 048309 53 AQMRKHSLLIEKARVS-KEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEM 110 (288)
Q Consensus 53 a~~~~~~~l~~~~~~~-~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~ 110 (288)
.+.+.+..++..+... +-..|+|+|.|.|+++..++-+.+..|.+||-|....+.|++
T Consensus 136 hEi~~lselvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 136 HEIRRLSELVSSISDFTGIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred HHHHHHHHHHHHHHhhcCCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHH
Confidence 3445555566555433 336899999999999999988888999999999877777664
|
|
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.04 Score=48.29 Aligned_cols=100 Identities=22% Similarity=0.176 Sum_probs=64.2
Q ss_pred HHHcCCCCCCEEEEECCcc-cHHHHHHHHccCCE-EEEEcCCHHHHHHHHHHHHHcCCCCceEEEE-ccc----CCCCCC
Q 048309 62 IEKARVSKEHEVLEIGCGW-GTFAIEVVRQTGCN-YTGITLSAEQMKYAEMKVNEAGLQDHIRLYL-CDY----RQLPKA 134 (288)
Q Consensus 62 ~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~~-v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~-~d~----~~~~~~ 134 (288)
+......++.+||-+|+|. |..+..+++..+.+ |+++|.+++..+.+++. |.. .++. .+. ......
T Consensus 113 l~~~~~~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~----Ga~---~~i~~~~~~~~~~~~~~~ 185 (280)
T TIGR03366 113 LEAAGDLKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSF----GAT---ALAEPEVLAERQGGLQNG 185 (280)
T ss_pred HHhccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc----CCc---EecCchhhHHHHHHHhCC
Confidence 4445556888999999875 88888888876665 99999998877776553 321 1111 111 111123
Q ss_pred CCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEee
Q 048309 135 KKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 135 ~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
..+|+++-... -...++.+.+.|+++|++++...
T Consensus 186 ~g~d~vid~~G--------~~~~~~~~~~~l~~~G~iv~~G~ 219 (280)
T TIGR03366 186 RGVDVALEFSG--------ATAAVRACLESLDVGGTAVLAGS 219 (280)
T ss_pred CCCCEEEECCC--------ChHHHHHHHHHhcCCCEEEEecc
Confidence 46899885321 12356666789999999987553
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.03 Score=42.82 Aligned_cols=85 Identities=19% Similarity=0.222 Sum_probs=59.0
Q ss_pred cccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCC-------CCCCCCCEEEEccchhhhCH
Q 048309 79 GWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQL-------PKAKKYDRIISCEMMEAVGH 151 (288)
Q Consensus 79 G~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~-------~~~~~fD~I~~~~~l~~~~~ 151 (288)
|.|..+..+++..+++|+++|.++...+.+++. |. -.++..+-.++ .....+|+|+-.-.
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~----Ga---~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g------ 67 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKEL----GA---DHVIDYSDDDFVEQIRELTGGRGVDVVIDCVG------ 67 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT----TE---SEEEETTTSSHHHHHHHHTTTSSEEEEEESSS------
T ss_pred ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHhh----cc---cccccccccccccccccccccccceEEEEecC------
Confidence 568899999988779999999999988887654 32 13333322221 13357999986522
Q ss_pred hhHHHHHHHHhcccccCcEEEEEeecC
Q 048309 152 EYMEEYFGCCESLLAKDGLLVLQFSST 178 (288)
Q Consensus 152 ~~~~~~l~~~~~~LkpgG~l~~~~~~~ 178 (288)
-...++....+|+++|++++.....
T Consensus 68 --~~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 68 --SGDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp --SHHHHHHHHHHEEEEEEEEEESSTS
T ss_pred --cHHHHHHHHHHhccCCEEEEEEccC
Confidence 1456777779999999999865544
|
1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: |
| >COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.13 Score=42.12 Aligned_cols=113 Identities=16% Similarity=0.146 Sum_probs=79.3
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc---cC--CEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCC
Q 048309 57 KHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ---TG--CNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQL 131 (288)
Q Consensus 57 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~---~~--~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~ 131 (288)
.++.++-.+ ++..|+|+|+-.|+.+...|.. .| .+|+++|++-....-+... . +++.++.++..+.
T Consensus 60 ~yQellw~~---~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e-----~-p~i~f~egss~dp 130 (237)
T COG3510 60 NYQELLWEL---QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE-----V-PDILFIEGSSTDP 130 (237)
T ss_pred HHHHHHHhc---CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc-----C-CCeEEEeCCCCCH
Confidence 344555443 4568999999999988877764 34 6899999887654333221 2 5799999998875
Q ss_pred C--------CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCCC
Q 048309 132 P--------KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPD 180 (288)
Q Consensus 132 ~--------~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 180 (288)
. ..+.--+.+|..+-||. +...+-++-...+|..|-++++.+....+
T Consensus 131 ai~eqi~~~~~~y~kIfvilDsdHs~--~hvLAel~~~~pllsaG~Y~vVeDs~v~d 185 (237)
T COG3510 131 AIAEQIRRLKNEYPKIFVILDSDHSM--EHVLAELKLLAPLLSAGDYLVVEDSNVND 185 (237)
T ss_pred HHHHHHHHHhcCCCcEEEEecCCchH--HHHHHHHHHhhhHhhcCceEEEecccccC
Confidence 3 12233555666677777 66777888888999999999998766444
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.08 Score=45.14 Aligned_cols=57 Identities=21% Similarity=0.302 Sum_probs=46.4
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHc
Q 048309 57 KHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEA 115 (288)
Q Consensus 57 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~ 115 (288)
.+..+++... .+|..|||.-||+|..+....+ .+.+++|+|++++..+.+.++++..
T Consensus 152 l~~~~i~~~s-~~g~~vlDpf~Gsgtt~~aa~~-~~r~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 152 SLQPLIESFT-HPNAIVLDPFAGSGSTCVAALQ-SGRRYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred HHHHHHHHhC-CCCCEEEeCCCCCCHHHHHHHH-cCCCEEEEecCHHHHHHHHHHHHHH
Confidence 4455665443 4788999999999999887766 4889999999999999999988754
|
|
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.042 Score=48.23 Aligned_cols=71 Identities=11% Similarity=0.106 Sum_probs=54.6
Q ss_pred EEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC--C-CCCCCEEEEccchhh
Q 048309 72 EVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP--K-AKKYDRIISCEMMEA 148 (288)
Q Consensus 72 ~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~--~-~~~fD~I~~~~~l~~ 148 (288)
+++|+-||.|.++.-+.+.....+.++|+++.+++..+.++.. .++.+|+.++. . ...+|+++....+..
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~-------~~~~~Di~~~~~~~~~~~~D~l~~gpPCq~ 74 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPN-------KLIEGDITKIDEKDFIPDIDLLTGGFPCQP 74 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCC-------CCccCccccCchhhcCCCCCEEEeCCCChh
Confidence 6899999999998888765333578899999999888777531 26778888876 2 467999999877665
Q ss_pred h
Q 048309 149 V 149 (288)
Q Consensus 149 ~ 149 (288)
+
T Consensus 75 f 75 (275)
T cd00315 75 F 75 (275)
T ss_pred h
Confidence 5
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.054 Score=45.47 Aligned_cols=54 Identities=26% Similarity=0.297 Sum_probs=40.7
Q ss_pred HHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHH
Q 048309 55 MRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEM 110 (288)
Q Consensus 55 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~ 110 (288)
...++++++..- .+|..|||.-||+|+.+....+ .+.+.+|+|++++.++.|++
T Consensus 178 ~~l~~~lI~~~t-~~gdiVlDpF~GSGTT~~aa~~-l~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 178 VELIERLIKAST-NPGDIVLDPFAGSGTTAVAAEE-LGRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp HHHHHHHHHHHS--TT-EEEETT-TTTHHHHHHHH-TT-EEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHHhhh-ccceeeehhhhccChHHHHHHH-cCCeEEEEeCCHHHHHHhcC
Confidence 345566666654 5788999999999999887766 48899999999999998864
|
In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B .... |
| >KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.011 Score=54.97 Aligned_cols=101 Identities=19% Similarity=0.187 Sum_probs=82.7
Q ss_pred CCCCEEEEECCcccHHHHHHHHc-cC-CEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-----CCCCCCEE
Q 048309 68 SKEHEVLEIGCGWGTFAIEVVRQ-TG-CNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-----KAKKYDRI 140 (288)
Q Consensus 68 ~~~~~vLDiGcG~G~~~~~la~~-~~-~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-----~~~~fD~I 140 (288)
.++.+|||.=|++|.-++..++. ++ .+|++.|.++..++..+++++.++..+.++....|+..+- ....||+|
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvI 187 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVI 187 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceE
Confidence 35679999999999999999988 33 4799999999999999999999988877888888886542 34789999
Q ss_pred EEccchhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 141 ISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 141 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
=.... .....|+..+.+.++.||.+.++
T Consensus 188 DLDPy------Gs~s~FLDsAvqav~~gGLL~vT 215 (525)
T KOG1253|consen 188 DLDPY------GSPSPFLDSAVQAVRDGGLLCVT 215 (525)
T ss_pred ecCCC------CCccHHHHHHHHHhhcCCEEEEE
Confidence 76421 33467888888999999999984
|
|
| >PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.11 Score=44.69 Aligned_cols=126 Identities=11% Similarity=0.085 Sum_probs=74.0
Q ss_pred CHHHHHHHHHHHHHHHcC-CCCCCEEEEECCcccHHHHHHHH---c---cCCEEEEEcCCH-------------------
Q 048309 49 DLKVAQMRKHSLLIEKAR-VSKEHEVLEIGCGWGTFAIEVVR---Q---TGCNYTGITLSA------------------- 102 (288)
Q Consensus 49 ~l~~a~~~~~~~l~~~~~-~~~~~~vLDiGcG~G~~~~~la~---~---~~~~v~giD~s~------------------- 102 (288)
.+.......+..+++.+- ..-+..|+|+||-.|..++.++. . .+.++.+.|.=+
T Consensus 53 m~g~~Rl~~L~~~~~~v~~~~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~ 132 (248)
T PF05711_consen 53 MIGRERLDNLYQAVEQVLAEDVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFH 132 (248)
T ss_dssp SSHHHHHHHHHHHHHHCCHTTS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCC
T ss_pred ccCHHHHHHHHHHHHHHHhcCCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhh
Confidence 445666666777777663 22345899999999987765433 1 234688887211
Q ss_pred -------HHHHHHHHHHHHcCC-CCceEEEEcccCC-CC--CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEE
Q 048309 103 -------EQMKYAEMKVNEAGL-QDHIRLYLCDYRQ-LP--KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLL 171 (288)
Q Consensus 103 -------~~~~~a~~~~~~~g~-~~~v~~~~~d~~~-~~--~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l 171 (288)
...+..++++...|+ .++++++.+.+.+ ++ +..++-++....-++ +.....++.++..|.|||++
T Consensus 133 ~~~~~~~~s~e~V~~n~~~~gl~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~DlY----esT~~aLe~lyprl~~GGiI 208 (248)
T PF05711_consen 133 EYNGYLAVSLEEVRENFARYGLLDDNVRFVKGWFPDTLPDAPIERIALLHLDCDLY----ESTKDALEFLYPRLSPGGII 208 (248)
T ss_dssp GCCHHCTHHHHHHHHCCCCTTTSSTTEEEEES-HHHHCCC-TT--EEEEEE---SH----HHHHHHHHHHGGGEEEEEEE
T ss_pred hcccccccCHHHHHHHHHHcCCCcccEEEECCcchhhhccCCCccEEEEEEeccch----HHHHHHHHHHHhhcCCCeEE
Confidence 123444455544454 4589999999866 33 334444444433333 44577899999999999999
Q ss_pred EEEeecC
Q 048309 172 VLQFSST 178 (288)
Q Consensus 172 ~~~~~~~ 178 (288)
++.++..
T Consensus 209 i~DDY~~ 215 (248)
T PF05711_consen 209 IFDDYGH 215 (248)
T ss_dssp EESSTTT
T ss_pred EEeCCCC
Confidence 9977654
|
TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A. |
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.034 Score=50.53 Aligned_cols=99 Identities=20% Similarity=0.217 Sum_probs=64.1
Q ss_pred HHHcCCCCCCEEEEECCcc-cHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEc---ccCC----CC
Q 048309 62 IEKARVSKEHEVLEIGCGW-GTFAIEVVRQTGC-NYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLC---DYRQ----LP 132 (288)
Q Consensus 62 ~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~---d~~~----~~ 132 (288)
.......++.+||-.|||. |..+..+++..+. +|+++|.+++..+.+++ .|.. .++.. +..+ ..
T Consensus 169 ~~~~~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~----~Ga~---~~i~~~~~~~~~~i~~~~ 241 (358)
T TIGR03451 169 VNTGGVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWARE----FGAT---HTVNSSGTDPVEAIRALT 241 (358)
T ss_pred HhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCc---eEEcCCCcCHHHHHHHHh
Confidence 3445667899999999875 7788888887676 59999999988877754 2321 22211 1111 11
Q ss_pred CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 133 KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 133 ~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
....+|+|+-.-.- ...+....+.+++||++++..
T Consensus 242 ~~~g~d~vid~~g~--------~~~~~~~~~~~~~~G~iv~~G 276 (358)
T TIGR03451 242 GGFGADVVIDAVGR--------PETYKQAFYARDLAGTVVLVG 276 (358)
T ss_pred CCCCCCEEEECCCC--------HHHHHHHHHHhccCCEEEEEC
Confidence 22468988853211 234555668899999998754
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.15 Score=46.05 Aligned_cols=96 Identities=11% Similarity=0.104 Sum_probs=62.0
Q ss_pred cCCCCCCEEEEECCcc-cHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCEEE
Q 048309 65 ARVSKEHEVLEIGCGW-GTFAIEVVRQ--TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRII 141 (288)
Q Consensus 65 ~~~~~~~~vLDiGcG~-G~~~~~la~~--~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~ 141 (288)
+..+++.+||-+|||. |.++..++++ .+.+|+++|.+++.++.+++ .+. . ... .++.....+|+|+
T Consensus 159 ~~~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~~---~-~~~---~~~~~~~g~d~vi 227 (341)
T cd08237 159 IAHKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----ADE---T-YLI---DDIPEDLAVDHAF 227 (341)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cCc---e-eeh---hhhhhccCCcEEE
Confidence 3456789999999986 7777777764 34689999999988877754 221 1 111 1122222589888
Q ss_pred EccchhhhCHhhHHHHHHHHhcccccCcEEEEEee
Q 048309 142 SCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 142 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
-.-. . ......+....+.|++||++++.-.
T Consensus 228 D~~G--~---~~~~~~~~~~~~~l~~~G~iv~~G~ 257 (341)
T cd08237 228 ECVG--G---RGSQSAINQIIDYIRPQGTIGLMGV 257 (341)
T ss_pred ECCC--C---CccHHHHHHHHHhCcCCcEEEEEee
Confidence 5321 0 1123466777899999999987543
|
NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase ( |
| >COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.19 Score=44.62 Aligned_cols=123 Identities=20% Similarity=0.246 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCC--CCceEEEEcccCC
Q 048309 53 AQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGL--QDHIRLYLCDYRQ 130 (288)
Q Consensus 53 a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~--~~~v~~~~~d~~~ 130 (288)
+..+.++..+...-...-..|+-+|||-=.-+-.+-...+..|.-+|. |+.++.=++.+.+.+. +...+++..|+.+
T Consensus 76 ~Rtr~fD~~~~~~~~~g~~qvViLgaGLDTRayRl~~~~~~~vfEvD~-Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~ 154 (297)
T COG3315 76 ARTRYFDDFVRAALDAGIRQVVILGAGLDTRAYRLDWPKGTRVFEVDL-PEVIEFKKKLLAERGATPPAHRRLVAVDLRE 154 (297)
T ss_pred HHHHHHHHHHHHHHHhcccEEEEeccccccceeecCCCCCCeEEECCC-cHHHHHHHHHhhhcCCCCCceEEEEeccccc
Confidence 444455554443322225689999999755444443323567888885 7788777777777653 3468999999984
Q ss_pred CC-----CCCCC-----CEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEee
Q 048309 131 LP-----KAKKY-----DRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 131 ~~-----~~~~f-----D~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
-. ....| =++++-+.+.+++++...+++..+.....||..++....
T Consensus 155 ~dw~~~L~~~G~d~~~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~ 210 (297)
T COG3315 155 DDWPQALAAAGFDRSRPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYS 210 (297)
T ss_pred cchHHHHHhcCCCcCCCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEecc
Confidence 32 32334 478888999999999999999999999999998887553
|
|
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.18 Score=46.81 Aligned_cols=99 Identities=11% Similarity=0.046 Sum_probs=64.6
Q ss_pred HHHHHHHHcCC-CCCCEEEEECCcc-cHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCC
Q 048309 57 KHSLLIEKARV-SKEHEVLEIGCGW-GTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKA 134 (288)
Q Consensus 57 ~~~~l~~~~~~-~~~~~vLDiGcG~-G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~ 134 (288)
.+..+.+..+. .+|.+|+=+|||+ |......++..|++|+.+|.++...+.|+. .|. +.. +..+ .-
T Consensus 188 ~~~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~----~G~----~~~--~~~e--~v 255 (413)
T cd00401 188 LIDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAM----EGY----EVM--TMEE--AV 255 (413)
T ss_pred hHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHh----cCC----EEc--cHHH--HH
Confidence 34555555443 5789999999998 777777776678899999999987766654 232 222 1111 11
Q ss_pred CCCCEEEEccchhhhCHhhHHHHHHH-HhcccccCcEEEEEe
Q 048309 135 KKYDRIISCEMMEAVGHEYMEEYFGC-CESLLAKDGLLVLQF 175 (288)
Q Consensus 135 ~~fD~I~~~~~l~~~~~~~~~~~l~~-~~~~LkpgG~l~~~~ 175 (288)
..+|+|+.... . ...+.. ..+.+++||+++...
T Consensus 256 ~~aDVVI~atG-------~-~~~i~~~~l~~mk~GgilvnvG 289 (413)
T cd00401 256 KEGDIFVTTTG-------N-KDIITGEHFEQMKDGAIVCNIG 289 (413)
T ss_pred cCCCEEEECCC-------C-HHHHHHHHHhcCCCCcEEEEeC
Confidence 45899987532 1 223333 478999999987754
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.11 Score=44.57 Aligned_cols=94 Identities=20% Similarity=0.213 Sum_probs=61.3
Q ss_pred CCCCCEEEEECCcc-cHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCC------CCCCCCCE
Q 048309 67 VSKEHEVLEIGCGW-GTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQL------PKAKKYDR 139 (288)
Q Consensus 67 ~~~~~~vLDiGcG~-G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~------~~~~~fD~ 139 (288)
..++.+||..|+|. |..+..+++..+.+|++++.+++..+.+++. +.. .++...-.+. ...+.+|+
T Consensus 132 ~~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~----g~~---~~~~~~~~~~~~~~~~~~~~~~d~ 204 (271)
T cd05188 132 LKPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKEL----GAD---HVIDYKEEDLEEELRLTGGGGADV 204 (271)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHh----CCc---eeccCCcCCHHHHHHHhcCCCCCE
Confidence 36889999999985 7777788877778999999998877666432 211 1111111111 12467999
Q ss_pred EEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 140 IISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 140 I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
++....- ...+..+.+.|+++|.++...
T Consensus 205 vi~~~~~--------~~~~~~~~~~l~~~G~~v~~~ 232 (271)
T cd05188 205 VIDAVGG--------PETLAQALRLLRPGGRIVVVG 232 (271)
T ss_pred EEECCCC--------HHHHHHHHHhcccCCEEEEEc
Confidence 9864321 134555668889999988744
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.027 Score=41.67 Aligned_cols=33 Identities=24% Similarity=0.401 Sum_probs=27.3
Q ss_pred CCCEEEEECCcccHHHHHHHHccCCEEEEEcCCH
Q 048309 69 KEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSA 102 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~ 102 (288)
+....+|||||+|.+.--|.+. |..=.|+|.-.
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~E-Gy~G~GiD~R~ 90 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSE-GYPGWGIDARR 90 (112)
T ss_pred CCCceEEccCCchHHHHHHHhC-CCCcccccccc
Confidence 4568999999999998888875 77888999643
|
; GO: 0008168 methyltransferase activity |
| >COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only] | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.27 Score=44.28 Aligned_cols=108 Identities=21% Similarity=0.246 Sum_probs=70.1
Q ss_pred HHHHHHHHcCCCCCCEEEEEC--CcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCC---
Q 048309 57 KHSLLIEKARVSKEHEVLEIG--CGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQL--- 131 (288)
Q Consensus 57 ~~~~l~~~~~~~~~~~vLDiG--cG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~--- 131 (288)
.+..+.+...++++.+||=.| .|.|..+.++|+..+..++++..+++-.+.+++. |-+.-+.+...|+.+-
T Consensus 130 A~~~l~~~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~l----GAd~vi~y~~~~~~~~v~~ 205 (326)
T COG0604 130 AWLALFDRAGLKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKEL----GADHVINYREEDFVEQVRE 205 (326)
T ss_pred HHHHHHHhcCCCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHHhc----CCCEEEcCCcccHHHHHHH
Confidence 334455567788899999998 4568999999998665777777777665554443 4321233334443331
Q ss_pred -CCCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 132 -PKAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 132 -~~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
.....+|+|+..-. ...+.+....|+++|+++.....
T Consensus 206 ~t~g~gvDvv~D~vG---------~~~~~~~l~~l~~~G~lv~ig~~ 243 (326)
T COG0604 206 LTGGKGVDVVLDTVG---------GDTFAASLAALAPGGRLVSIGAL 243 (326)
T ss_pred HcCCCCceEEEECCC---------HHHHHHHHHHhccCCEEEEEecC
Confidence 13347999997432 34455566899999999885443
|
|
| >PLN02740 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.22 Score=45.76 Aligned_cols=98 Identities=19% Similarity=0.204 Sum_probs=63.7
Q ss_pred HHcCCCCCCEEEEECCcc-cHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcc-----cCC-CC--
Q 048309 63 EKARVSKEHEVLEIGCGW-GTFAIEVVRQTGC-NYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCD-----YRQ-LP-- 132 (288)
Q Consensus 63 ~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d-----~~~-~~-- 132 (288)
+....+++.+||=+|+|. |..+..+++..+. +|+++|.+++..+.+++ .|.. .++... ..+ +.
T Consensus 192 ~~~~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~---~~i~~~~~~~~~~~~v~~~ 264 (381)
T PLN02740 192 NTANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKE----MGIT---DFINPKDSDKPVHERIREM 264 (381)
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHH----cCCc---EEEecccccchHHHHHHHH
Confidence 445678899999999886 8888888887676 69999999988887754 2431 222211 111 11
Q ss_pred CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccC-cEEEEEe
Q 048309 133 KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKD-GLLVLQF 175 (288)
Q Consensus 133 ~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~ 175 (288)
..+.+|+|+-...- ...+......+++| |++++..
T Consensus 265 ~~~g~dvvid~~G~--------~~~~~~a~~~~~~g~G~~v~~G 300 (381)
T PLN02740 265 TGGGVDYSFECAGN--------VEVLREAFLSTHDGWGLTVLLG 300 (381)
T ss_pred hCCCCCEEEECCCC--------hHHHHHHHHhhhcCCCEEEEEc
Confidence 12369998864221 23455566788887 9887644
|
|
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.084 Score=46.59 Aligned_cols=97 Identities=14% Similarity=0.175 Sum_probs=74.0
Q ss_pred CCEEEEECCcc-cHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CCCCCCEEEEccchh
Q 048309 70 EHEVLEIGCGW-GTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAKKYDRIISCEMME 147 (288)
Q Consensus 70 ~~~vLDiGcG~-G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~~fD~I~~~~~l~ 147 (288)
+.+|.-||.|. |..+..+|...++.|+.+|+|...+++....+. .+++.+-.+...+. .-.+.|+++..-.+.
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~-----~rv~~~~st~~~iee~v~~aDlvIgaVLIp 242 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFG-----GRVHTLYSTPSNIEEAVKKADLVIGAVLIP 242 (371)
T ss_pred CccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhC-----ceeEEEEcCHHHHHHHhhhccEEEEEEEec
Confidence 34677899996 999999988788999999999998887776653 35777777776665 446899998754333
Q ss_pred hhCHhhHHHHHHHHhcccccCcEEEE
Q 048309 148 AVGHEYMEEYFGCCESLLAKDGLLVL 173 (288)
Q Consensus 148 ~~~~~~~~~~l~~~~~~LkpgG~l~~ 173 (288)
-- ..+.-..+++...+|||++++=
T Consensus 243 ga--kaPkLvt~e~vk~MkpGsVivD 266 (371)
T COG0686 243 GA--KAPKLVTREMVKQMKPGSVIVD 266 (371)
T ss_pred CC--CCceehhHHHHHhcCCCcEEEE
Confidence 33 5566778888899999998763
|
|
| >KOG2078 consensus tRNA modification enzyme [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.019 Score=52.42 Aligned_cols=64 Identities=19% Similarity=0.403 Sum_probs=56.6
Q ss_pred CCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCc-eEEEEcccCCC
Q 048309 67 VSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDH-IRLYLCDYRQL 131 (288)
Q Consensus 67 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~-v~~~~~d~~~~ 131 (288)
.++|..|.|+-||.|-++..++.. +|.|++-|+++++++..+.++..+.+.+. +++..+|+.++
T Consensus 247 fk~gevv~D~FaGvGPfa~Pa~kK-~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~F 311 (495)
T KOG2078|consen 247 FKPGEVVCDVFAGVGPFALPAAKK-GCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDF 311 (495)
T ss_pred cCCcchhhhhhcCcCccccchhhc-CcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHH
Confidence 458899999999999999999986 79999999999999999999988877555 88888888654
|
|
| >PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.58 Score=39.21 Aligned_cols=101 Identities=18% Similarity=0.236 Sum_probs=64.9
Q ss_pred CCCCEEEEECCcccH----HHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccC-CC-CCCCCCCEE
Q 048309 68 SKEHEVLEIGCGWGT----FAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYR-QL-PKAKKYDRI 140 (288)
Q Consensus 68 ~~~~~vLDiGcG~G~----~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~-~~-~~~~~fD~I 140 (288)
...+.++++.|+.|. ++...|.+ .+.++++|-.+++.....++.+...++.+.++|+.++.. ++ +.-...|.+
T Consensus 40 ~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~~~~~~~iDF~ 119 (218)
T PF07279_consen 40 WNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEVMPGLKGIDFV 119 (218)
T ss_pred ccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHHHhhccCCCEE
Confidence 345678999766432 23333333 778999999999988888888888888666799998853 33 334679998
Q ss_pred EEccchhhhCHhhHH-HHHHHHhcccccCcEEEEEe
Q 048309 141 ISCEMMEAVGHEYME-EYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 141 ~~~~~l~~~~~~~~~-~~l~~~~~~LkpgG~l~~~~ 175 (288)
+...-. ++.. .+|+-+ + +.|.|-+++..
T Consensus 120 vVDc~~-----~d~~~~vl~~~-~-~~~~GaVVV~~ 148 (218)
T PF07279_consen 120 VVDCKR-----EDFAARVLRAA-K-LSPRGAVVVCY 148 (218)
T ss_pred EEeCCc-----hhHHHHHHHHh-c-cCCCceEEEEe
Confidence 876432 2333 444433 2 44556655533
|
The function of this family is unknown. |
| >PLN03154 putative allyl alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.49 E-value=0.25 Score=44.74 Aligned_cols=97 Identities=15% Similarity=0.202 Sum_probs=64.2
Q ss_pred HHcCCCCCCEEEEECC-c-ccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEc----ccCC-CC--C
Q 048309 63 EKARVSKEHEVLEIGC-G-WGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLC----DYRQ-LP--K 133 (288)
Q Consensus 63 ~~~~~~~~~~vLDiGc-G-~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~----d~~~-~~--~ 133 (288)
....+.++.+||=.|+ | .|..+.++++..+.+|++++.+++..+.+++. .|.. .++.. +..+ +. .
T Consensus 152 ~~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~---lGa~---~vi~~~~~~~~~~~i~~~~ 225 (348)
T PLN03154 152 EVCSPKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNK---LGFD---EAFNYKEEPDLDAALKRYF 225 (348)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHh---cCCC---EEEECCCcccHHHHHHHHC
Confidence 4456778999999997 4 68899999988788999999988877666532 2431 22221 1111 11 1
Q ss_pred CCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 134 AKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 134 ~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
.+.+|+++-.-. ...+..+.+.|++||++++.
T Consensus 226 ~~gvD~v~d~vG---------~~~~~~~~~~l~~~G~iv~~ 257 (348)
T PLN03154 226 PEGIDIYFDNVG---------GDMLDAALLNMKIHGRIAVC 257 (348)
T ss_pred CCCcEEEEECCC---------HHHHHHHHHHhccCCEEEEE
Confidence 246898885321 13456677899999999864
|
|
| >TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.37 Score=43.54 Aligned_cols=48 Identities=21% Similarity=0.399 Sum_probs=39.5
Q ss_pred HHcCCCCCCEEEEECCcc-cHHHHHHHHccCCEEEEEcCCHHHHHHHHH
Q 048309 63 EKARVSKEHEVLEIGCGW-GTFAIEVVRQTGCNYTGITLSAEQMKYAEM 110 (288)
Q Consensus 63 ~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~~v~giD~s~~~~~~a~~ 110 (288)
......++.+||-.|||. |..+..+++..+.+|+++|.+++.++.+++
T Consensus 160 ~~~~~~~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~ 208 (349)
T TIGR03201 160 VQAGLKKGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKG 208 (349)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH
Confidence 345677899999999976 888888888777789999999998877754
|
Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. |
| >PRK10309 galactitol-1-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.15 Score=45.92 Aligned_cols=98 Identities=19% Similarity=0.272 Sum_probs=61.6
Q ss_pred HHcCCCCCCEEEEECCcc-cHHHHHHHHccCCE-EEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcc---cC---CCCCC
Q 048309 63 EKARVSKEHEVLEIGCGW-GTFAIEVVRQTGCN-YTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCD---YR---QLPKA 134 (288)
Q Consensus 63 ~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~~-v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d---~~---~~~~~ 134 (288)
......++.+||=.|+|. |..+..+++..+.+ |++++.+++..+.+++ .|.. .++..+ .. .....
T Consensus 154 ~~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~Ga~---~~i~~~~~~~~~~~~~~~~ 226 (347)
T PRK10309 154 HLAQGCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKS----LGAM---QTFNSREMSAPQIQSVLRE 226 (347)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCc---eEecCcccCHHHHHHHhcC
Confidence 344567888999999876 77888888876765 7899999988776643 2321 122111 11 11123
Q ss_pred CCCC-EEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 135 KKYD-RIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 135 ~~fD-~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
..+| +|+-. .+. ...+....+.|++||++++..
T Consensus 227 ~~~d~~v~d~-----~G~---~~~~~~~~~~l~~~G~iv~~G 260 (347)
T PRK10309 227 LRFDQLILET-----AGV---PQTVELAIEIAGPRAQLALVG 260 (347)
T ss_pred CCCCeEEEEC-----CCC---HHHHHHHHHHhhcCCEEEEEc
Confidence 4677 55432 211 235666778999999988754
|
|
| >TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase | Back alignment and domain information |
|---|
Probab=94.18 E-value=0.22 Score=44.28 Aligned_cols=88 Identities=18% Similarity=0.108 Sum_probs=57.3
Q ss_pred CCCCEEEEECCcc-cHHHHHHHHccCCE-EEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCEEEEccc
Q 048309 68 SKEHEVLEIGCGW-GTFAIEVVRQTGCN-YTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEM 145 (288)
Q Consensus 68 ~~~~~vLDiGcG~-G~~~~~la~~~~~~-v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~~~~~ 145 (288)
.++.++|=+|||. |.++..+++..+++ |+++|.+++.++.+... . ++ |..+. ....+|+|+-.-.
T Consensus 143 ~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~----~------~i--~~~~~-~~~g~Dvvid~~G 209 (308)
T TIGR01202 143 VKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY----E------VL--DPEKD-PRRDYRAIYDASG 209 (308)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc----c------cc--Chhhc-cCCCCCEEEECCC
Confidence 3577899899886 88888888876665 67789888776655431 1 11 11110 2346898886422
Q ss_pred hhhhCHhhHHHHHHHHhcccccCcEEEEEee
Q 048309 146 MEAVGHEYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 146 l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
- ...+..+.+.|+++|++++.-.
T Consensus 210 ~--------~~~~~~~~~~l~~~G~iv~~G~ 232 (308)
T TIGR01202 210 D--------PSLIDTLVRRLAKGGEIVLAGF 232 (308)
T ss_pred C--------HHHHHHHHHhhhcCcEEEEEee
Confidence 1 2345667789999999997543
|
|
| >cd08232 idonate-5-DH L-idonate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.38 Score=43.02 Aligned_cols=96 Identities=15% Similarity=0.211 Sum_probs=61.7
Q ss_pred HcCCCCCCEEEEECCcc-cHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcc---cCCCC-CCCCC
Q 048309 64 KARVSKEHEVLEIGCGW-GTFAIEVVRQTGC-NYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCD---YRQLP-KAKKY 137 (288)
Q Consensus 64 ~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d---~~~~~-~~~~f 137 (288)
.+...++.+||-.|||. |..+..+++..+. .+++++.+++..+.+++. +.. .++..+ ..... ..+.+
T Consensus 160 ~~~~~~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~----g~~---~vi~~~~~~~~~~~~~~~~v 232 (339)
T cd08232 160 RAGDLAGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAM----GAD---ETVNLARDPLAAYAADKGDF 232 (339)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc----CCC---EEEcCCchhhhhhhccCCCc
Confidence 34434788999899886 7788888887676 799999988887765442 321 222111 11222 22459
Q ss_pred CEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 138 DRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 138 D~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
|+++..... ...++.+.+.|+++|+++..
T Consensus 233 d~vld~~g~--------~~~~~~~~~~L~~~G~~v~~ 261 (339)
T cd08232 233 DVVFEASGA--------PAALASALRVVRPGGTVVQV 261 (339)
T ss_pred cEEEECCCC--------HHHHHHHHHHHhcCCEEEEE
Confidence 999864321 23456677899999998864
|
L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai |
| >COG1568 Predicted methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.04 E-value=0.48 Score=41.20 Aligned_cols=102 Identities=18% Similarity=0.313 Sum_probs=77.1
Q ss_pred CCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCC-C--CCCCCCEEEEcc
Q 048309 69 KEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQL-P--KAKKYDRIISCE 144 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~-~--~~~~fD~I~~~~ 144 (288)
.|+.|+=+| -.-..++.++-. ...+|..+|+++..++...+.+++.|+ +|++.+.-|+.+. | ....||+.+...
T Consensus 152 ~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~-~~ie~~~~Dlr~plpe~~~~kFDvfiTDP 229 (354)
T COG1568 152 EGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGY-NNIEAFVFDLRNPLPEDLKRKFDVFITDP 229 (354)
T ss_pred CCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCc-cchhheeehhcccChHHHHhhCCeeecCc
Confidence 577899898 333344444443 456899999999999999999999998 5799999999874 4 458999998754
Q ss_pred chhhhCHhhHHHHHHHHhcccccC---cEEEEEe
Q 048309 145 MMEAVGHEYMEEYFGCCESLLAKD---GLLVLQF 175 (288)
Q Consensus 145 ~l~~~~~~~~~~~l~~~~~~Lkpg---G~l~~~~ 175 (288)
.+.+ .....++.+=...||.- |.+.++.
T Consensus 230 -peTi--~alk~FlgRGI~tLkg~~~aGyfgiT~ 260 (354)
T COG1568 230 -PETI--KALKLFLGRGIATLKGEGCAGYFGITR 260 (354)
T ss_pred -hhhH--HHHHHHHhccHHHhcCCCccceEeeee
Confidence 3445 56677888888888876 7777644
|
|
| >cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase | Back alignment and domain information |
|---|
Probab=94.03 E-value=1.2 Score=41.30 Aligned_cols=101 Identities=18% Similarity=0.238 Sum_probs=61.9
Q ss_pred HcCCCCCCEEEEEC-Cc-ccHHHHHHHHccC---CEEEEEcCCHHHHHHHHHHHHHc----CCCCceEEEEc----ccCC
Q 048309 64 KARVSKEHEVLEIG-CG-WGTFAIEVVRQTG---CNYTGITLSAEQMKYAEMKVNEA----GLQDHIRLYLC----DYRQ 130 (288)
Q Consensus 64 ~~~~~~~~~vLDiG-cG-~G~~~~~la~~~~---~~v~giD~s~~~~~~a~~~~~~~----g~~~~v~~~~~----d~~~ 130 (288)
....+++.+|+=+| +| .|..+..+++..+ .+|+++|.+++.++.+++..... |. ...++.. +...
T Consensus 170 ~~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga--~~~~i~~~~~~~~~~ 247 (410)
T cd08238 170 RMGIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGI--ELLYVNPATIDDLHA 247 (410)
T ss_pred hcCCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCc--eEEEECCCccccHHH
Confidence 34567888999887 45 5888888888633 37999999999998887752111 11 1112211 1111
Q ss_pred ----CCCCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 131 ----LPKAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 131 ----~~~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
+.....+|+|+.... ....+....+.++++|.+++.
T Consensus 248 ~v~~~t~g~g~D~vid~~g--------~~~~~~~a~~~l~~~G~~v~~ 287 (410)
T cd08238 248 TLMELTGGQGFDDVFVFVP--------VPELVEEADTLLAPDGCLNFF 287 (410)
T ss_pred HHHHHhCCCCCCEEEEcCC--------CHHHHHHHHHHhccCCeEEEE
Confidence 112346998886321 023556667889988877653
|
L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found |
| >cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=93.94 E-value=0.16 Score=45.48 Aligned_cols=100 Identities=25% Similarity=0.328 Sum_probs=64.1
Q ss_pred HHcCCCCCCEEEEECCcc-cHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEccc----CCCCCCCCC
Q 048309 63 EKARVSKEHEVLEIGCGW-GTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDY----RQLPKAKKY 137 (288)
Q Consensus 63 ~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~----~~~~~~~~f 137 (288)
....+.++.+||-.|+|. |..+..+++..+.+++++..+++..+.+++. +...-+.....+. ........+
T Consensus 153 ~~~~l~~g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~~~~~~----g~~~v~~~~~~~~~~~l~~~~~~~~v 228 (337)
T cd08261 153 RRAGVTAGDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERLEFAREL----GADDTINVGDEDVAARLRELTDGEGA 228 (337)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHh----CCCEEecCcccCHHHHHHHHhCCCCC
Confidence 445677888999999875 8888888888788999998888877766442 2210011111111 111133569
Q ss_pred CEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 138 DRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 138 D~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
|+++....- ...+..+.+.|+++|.++..
T Consensus 229 d~vld~~g~--------~~~~~~~~~~l~~~G~~i~~ 257 (337)
T cd08261 229 DVVIDATGN--------PASMEEAVELVAHGGRVVLV 257 (337)
T ss_pred CEEEECCCC--------HHHHHHHHHHHhcCCEEEEE
Confidence 999875210 23456667889999998864
|
This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, |
| >PLN02827 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.32 Score=44.68 Aligned_cols=97 Identities=20% Similarity=0.197 Sum_probs=61.6
Q ss_pred HHcCCCCCCEEEEECCcc-cHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEc-----ccCC-CC--
Q 048309 63 EKARVSKEHEVLEIGCGW-GTFAIEVVRQTGC-NYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLC-----DYRQ-LP-- 132 (288)
Q Consensus 63 ~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~-----d~~~-~~-- 132 (288)
+.....++.+||-.|+|. |..+..+++..+. .|+++|.+++..+.+++ .|.. .++.. +... +.
T Consensus 187 ~~~~~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~----lGa~---~~i~~~~~~~~~~~~v~~~ 259 (378)
T PLN02827 187 NVADVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKT----FGVT---DFINPNDLSEPIQQVIKRM 259 (378)
T ss_pred hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCc---EEEcccccchHHHHHHHHH
Confidence 345677899999999876 7888888887665 58899999887776644 3431 12211 1111 11
Q ss_pred CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccC-cEEEEE
Q 048309 133 KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKD-GLLVLQ 174 (288)
Q Consensus 133 ~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~ 174 (288)
..+.+|+|+-.-. -...+..+.+.+++| |++++.
T Consensus 260 ~~~g~d~vid~~G--------~~~~~~~~l~~l~~g~G~iv~~ 294 (378)
T PLN02827 260 TGGGADYSFECVG--------DTGIATTALQSCSDGWGLTVTL 294 (378)
T ss_pred hCCCCCEEEECCC--------ChHHHHHHHHhhccCCCEEEEE
Confidence 1236898885321 122455666888998 999874
|
|
| >TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase | Back alignment and domain information |
|---|
Probab=93.85 E-value=0.38 Score=42.85 Aligned_cols=98 Identities=19% Similarity=0.310 Sum_probs=64.3
Q ss_pred HHHHcCCCCCCEEEEECC--cccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcc----cCCC-C-
Q 048309 61 LIEKARVSKEHEVLEIGC--GWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCD----YRQL-P- 132 (288)
Q Consensus 61 l~~~~~~~~~~~vLDiGc--G~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d----~~~~-~- 132 (288)
+.......++.+||=.|. |.|..+..+++..+.+|++++.+++..+.+++ .|.. .++..+ ..+. .
T Consensus 130 l~~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~----lGa~---~vi~~~~~~~~~~~~~~ 202 (325)
T TIGR02825 130 LLEICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKK----LGFD---VAFNYKTVKSLEETLKK 202 (325)
T ss_pred HHHHhCCCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCCC---EEEeccccccHHHHHHH
Confidence 345566788999998883 46889999998878899999988887776644 3431 222211 1110 0
Q ss_pred -CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 133 -KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 133 -~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
..+.+|+|+-. .+ ...+....+.|+++|+++..
T Consensus 203 ~~~~gvdvv~d~-----~G----~~~~~~~~~~l~~~G~iv~~ 236 (325)
T TIGR02825 203 ASPDGYDCYFDN-----VG----GEFSNTVIGQMKKFGRIAIC 236 (325)
T ss_pred hCCCCeEEEEEC-----CC----HHHHHHHHHHhCcCcEEEEe
Confidence 23468888753 21 12346667899999999964
|
Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase. |
| >TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=93.80 E-value=0.44 Score=43.50 Aligned_cols=103 Identities=16% Similarity=0.148 Sum_probs=64.3
Q ss_pred HHHcCCCCCCEEEEECCcc-cHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCceEEEE--cccCC-CC--CC
Q 048309 62 IEKARVSKEHEVLEIGCGW-GTFAIEVVRQTGC-NYTGITLSAEQMKYAEMKVNEAGLQDHIRLYL--CDYRQ-LP--KA 134 (288)
Q Consensus 62 ~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~--~d~~~-~~--~~ 134 (288)
.+....+++.+||=.|||. |..+..+|+..+. +|+++|.+++..+.+++. |...-+.... .+..+ +. ..
T Consensus 178 ~~~~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~----Ga~~~i~~~~~~~~~~~~v~~~~~ 253 (368)
T TIGR02818 178 LNTAKVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKL----GATDCVNPNDYDKPIQEVIVEITD 253 (368)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh----CCCeEEcccccchhHHHHHHHHhC
Confidence 3455678899999999875 8888888887666 799999999988877543 3311011110 01101 11 12
Q ss_pred CCCCEEEEccchhhhCHhhHHHHHHHHhcccccC-cEEEEEee
Q 048309 135 KKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKD-GLLVLQFS 176 (288)
Q Consensus 135 ~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~ 176 (288)
+.+|+++-.-. -...+.++.+.+++| |++++...
T Consensus 254 ~g~d~vid~~G--------~~~~~~~~~~~~~~~~G~~v~~g~ 288 (368)
T TIGR02818 254 GGVDYSFECIG--------NVNVMRAALECCHKGWGESIIIGV 288 (368)
T ss_pred CCCCEEEECCC--------CHHHHHHHHHHhhcCCCeEEEEec
Confidence 36898885421 023455666788886 98887543
|
The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols. |
| >cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members | Back alignment and domain information |
|---|
Probab=93.79 E-value=0.7 Score=39.96 Aligned_cols=98 Identities=20% Similarity=0.221 Sum_probs=62.7
Q ss_pred HHcCCCCCCEEEEECCcc-cHHHHHHHHccCCE-EEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCEE
Q 048309 63 EKARVSKEHEVLEIGCGW-GTFAIEVVRQTGCN-YTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRI 140 (288)
Q Consensus 63 ~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~~-v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I 140 (288)
......++.+||-.|||. |..+..+++..+.+ |++++.+++..+.+++. |....+ .... ........+|++
T Consensus 91 ~~~~~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~----g~~~~~--~~~~-~~~~~~~~~d~v 163 (277)
T cd08255 91 RDAEPRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEAL----GPADPV--AADT-ADEIGGRGADVV 163 (277)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHc----CCCccc--cccc-hhhhcCCCCCEE
Confidence 345677889999999876 77888888876677 99999998887766543 211111 1110 011133569999
Q ss_pred EEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 141 ISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 141 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
+....- ...+....+.|+++|.++...
T Consensus 164 l~~~~~--------~~~~~~~~~~l~~~g~~~~~g 190 (277)
T cd08255 164 IEASGS--------PSALETALRLLRDRGRVVLVG 190 (277)
T ss_pred EEccCC--------hHHHHHHHHHhcCCcEEEEEe
Confidence 864211 224556668899999988643
|
This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD |
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.71 E-value=2.6 Score=38.78 Aligned_cols=163 Identities=16% Similarity=0.237 Sum_probs=93.0
Q ss_pred CEEEEECCcc-cHHHHHH-HHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC----CCCCCCEEEEcc
Q 048309 71 HEVLEIGCGW-GTFAIEV-VRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP----KAKKYDRIISCE 144 (288)
Q Consensus 71 ~~vLDiGcG~-G~~~~~l-a~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~----~~~~fD~I~~~~ 144 (288)
.+||=||||. |...... +++...+|+..|-|.+..+.+..... .+++..+.|+.+.+ .-..+|+|+...
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~-----~~v~~~~vD~~d~~al~~li~~~d~VIn~~ 76 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG-----GKVEALQVDAADVDALVALIKDFDLVINAA 76 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc-----ccceeEEecccChHHHHHHHhcCCEEEEeC
Confidence 4789999975 6665544 54443799999999888776655432 26899999998874 235669999865
Q ss_pred chhhhCHhhHHHHHHHHhcccccCcEEEEEeecCCCcccccccCchhhHhhhccCCCCCCCHHHHHHHHHHcCChHHHHh
Q 048309 145 MMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPDARYNEYRLSSDFIKEYIFPGGCLPSLSRITSAMAAASSLSKILA 224 (288)
Q Consensus 145 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~ 224 (288)
.-.+- ..+++.| -+-|+=++.+....+. ...+.+...+ .+...+-.
T Consensus 77 p~~~~-----~~i~ka~----i~~gv~yvDts~~~~~------------------------~~~~~~~a~~-Agit~v~~ 122 (389)
T COG1748 77 PPFVD-----LTILKAC----IKTGVDYVDTSYYEEP------------------------PWKLDEEAKK-AGITAVLG 122 (389)
T ss_pred Cchhh-----HHHHHHH----HHhCCCEEEcccCCch------------------------hhhhhHHHHH-cCeEEEcc
Confidence 43332 1333222 2345555543222211 1122222223 36666777
Q ss_pred hcCChHHHHHHHHHHHHHHhhcccCCccEEEEEEEcCCCCCcCCCCCCCCcccch
Q 048309 225 LGFNEKFIWTWEYYFDYSAAGFKPRTLGNYQIVLSRPGNVSVFSNPYKGFPSAYH 279 (288)
Q Consensus 225 ~gf~~~~~~~w~~~~~~~~~~f~~g~~~~~~~~~~k~~~~~~~~~p~~~~~~~~~ 279 (288)
.||++.+.+.+-.+.. ...|+ .+....+.....+.++ -+|+ ++-..|.
T Consensus 123 ~G~dPGi~nv~a~~a~--~~~~~--~i~si~iy~g~~g~~~--~~~l-~ya~tws 170 (389)
T COG1748 123 CGFDPGITNVLAAYAA--KELFD--EIESIDIYVGGLGEHG--DNPL-GYATTWS 170 (389)
T ss_pred cCcCcchHHHHHHHHH--HHhhc--cccEEEEEEecCCCCC--CCCc-cceeeec
Confidence 8898877765544333 33443 3444444444444434 3355 5655554
|
|
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.70 E-value=0.43 Score=44.53 Aligned_cols=87 Identities=15% Similarity=0.098 Sum_probs=55.9
Q ss_pred CCCEEEEECCcc-cHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCEEEEccchh
Q 048309 69 KEHEVLEIGCGW-GTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMME 147 (288)
Q Consensus 69 ~~~~vLDiGcG~-G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~~~~~l~ 147 (288)
.|.+|+=+|+|. |......++..+.+|+.+|.++.....+.. .|. ++. ++.+. -..+|+|+..-.-
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~----~G~----~v~--~l~ea--l~~aDVVI~aTG~- 277 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAM----DGF----RVM--TMEEA--AELGDIFVTATGN- 277 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHh----cCC----Eec--CHHHH--HhCCCEEEECCCC-
Confidence 788999999997 666666666678899999999865433322 232 221 22222 2468999875321
Q ss_pred hhCHhhHHHHHH-HHhcccccCcEEEEEe
Q 048309 148 AVGHEYMEEYFG-CCESLLAKDGLLVLQF 175 (288)
Q Consensus 148 ~~~~~~~~~~l~-~~~~~LkpgG~l~~~~ 175 (288)
...+. .....+|+|++++...
T Consensus 278 -------~~vI~~~~~~~mK~GailiNvG 299 (425)
T PRK05476 278 -------KDVITAEHMEAMKDGAILANIG 299 (425)
T ss_pred -------HHHHHHHHHhcCCCCCEEEEcC
Confidence 22333 5668899999887743
|
|
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=93.65 E-value=0.64 Score=38.06 Aligned_cols=100 Identities=26% Similarity=0.353 Sum_probs=61.5
Q ss_pred EEEEECCcc-cH-HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHH-------cC-CC--------CceEEEEcccCCCCC
Q 048309 72 EVLEIGCGW-GT-FAIEVVRQTGCNYTGITLSAEQMKYAEMKVNE-------AG-LQ--------DHIRLYLCDYRQLPK 133 (288)
Q Consensus 72 ~vLDiGcG~-G~-~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~-------~g-~~--------~~v~~~~~d~~~~~~ 133 (288)
+|.=||+|+ |. ++..++. .|.+|+.+|.+++.++.+++.++. .+ +. .++. ...|+.+.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~-~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~-~~~dl~~~-- 76 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFAR-AGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARIS-FTTDLEEA-- 76 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHH-TTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEE-EESSGGGG--
T ss_pred CEEEEcCCHHHHHHHHHHHh-CCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcc-cccCHHHH--
Confidence 356689987 53 4445555 489999999999999888877654 11 10 1233 23333332
Q ss_pred CCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCC
Q 048309 134 AKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTP 179 (288)
Q Consensus 134 ~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 179 (288)
...|+|+=. +.+.+ +...++++++.+.+.|+-.|...+.+.+
T Consensus 77 -~~adlViEa-i~E~l--~~K~~~~~~l~~~~~~~~ilasnTSsl~ 118 (180)
T PF02737_consen 77 -VDADLVIEA-IPEDL--ELKQELFAELDEICPPDTILASNTSSLS 118 (180)
T ss_dssp -CTESEEEE--S-SSH--HHHHHHHHHHHCCS-TTSEEEE--SSS-
T ss_pred -hhhheehhh-ccccH--HHHHHHHHHHHHHhCCCceEEecCCCCC
Confidence 267887743 34545 6678999999999999998887655543
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=93.58 E-value=0.12 Score=47.50 Aligned_cols=64 Identities=16% Similarity=0.247 Sum_probs=56.3
Q ss_pred cCCCCceEEEEcccCCCC---CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCC
Q 048309 115 AGLQDHIRLYLCDYRQLP---KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTP 179 (288)
Q Consensus 115 ~g~~~~v~~~~~d~~~~~---~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 179 (288)
.++ ++++++++++.+.. +++++|.++....+.+++++...+.++++.+.++|||+++.-....+
T Consensus 272 ~~~-drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~~ 338 (380)
T PF11899_consen 272 ARL-DRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAVP 338 (380)
T ss_pred cCC-CeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCCC
Confidence 355 68999999998854 57999999999999999999999999999999999999999766544
|
This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length. |
| >cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=93.47 E-value=1.4 Score=39.03 Aligned_cols=96 Identities=17% Similarity=0.248 Sum_probs=63.7
Q ss_pred HHHHcCCCCCCEEEEECCcc-cHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCE
Q 048309 61 LIEKARVSKEHEVLEIGCGW-GTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDR 139 (288)
Q Consensus 61 l~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~ 139 (288)
++......++.+||=.|+|. |..+..+++..+.++++++.+++..+.+++ .|.+ .. .+.........+|+
T Consensus 147 ~~~~~~~~~g~~vlV~g~g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~~~----~g~~---~~--~~~~~~~~~~~~d~ 217 (319)
T cd08242 147 ILEQVPITPGDKVAVLGDGKLGLLIAQVLALTGPDVVLVGRHSEKLALARR----LGVE---TV--LPDEAESEGGGFDV 217 (319)
T ss_pred HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH----cCCc---EE--eCccccccCCCCCE
Confidence 34556677889999888764 777777777778889999999988877765 2432 11 11111123357999
Q ss_pred EEEccchhhhCHhhHHHHHHHHhcccccCcEEEE
Q 048309 140 IISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVL 173 (288)
Q Consensus 140 I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~ 173 (288)
++-... -...+..+.+.|+++|.++.
T Consensus 218 vid~~g--------~~~~~~~~~~~l~~~g~~v~ 243 (319)
T cd08242 218 VVEATG--------SPSGLELALRLVRPRGTVVL 243 (319)
T ss_pred EEECCC--------ChHHHHHHHHHhhcCCEEEE
Confidence 986421 02345556678899999987
|
This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta |
| >PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known | Back alignment and domain information |
|---|
Probab=93.42 E-value=0.7 Score=37.35 Aligned_cols=101 Identities=22% Similarity=0.289 Sum_probs=61.2
Q ss_pred ECCcccHHHHHHHHc-c-CCEEE--EEcCCHHHHHHH---HHHHHHcCCCCceE-EEEcccCCCC-----CCCCCCEEEE
Q 048309 76 IGCGWGTFAIEVVRQ-T-GCNYT--GITLSAEQMKYA---EMKVNEAGLQDHIR-LYLCDYRQLP-----KAKKYDRIIS 142 (288)
Q Consensus 76 iGcG~G~~~~~la~~-~-~~~v~--giD~s~~~~~~a---~~~~~~~g~~~~v~-~~~~d~~~~~-----~~~~fD~I~~ 142 (288)
||=|.-.++..|+++ . +..++ ..|..++..+.. ..+++...- ..++ ....|+.++. ..+.||.|+.
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~-~g~~V~~~VDat~l~~~~~~~~~~FDrIiF 81 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRE-LGVTVLHGVDATKLHKHFRLKNQRFDRIIF 81 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhh-cCCccccCCCCCcccccccccCCcCCEEEE
Confidence 666777778888877 3 44554 455444333322 233332211 1233 3445776665 3578999999
Q ss_pred ccchhh-----------hCHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 143 CEMMEA-----------VGHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 143 ~~~l~~-----------~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
++..-. ....-+..+++.+..+|+++|.+.++-..
T Consensus 82 NFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~ 127 (166)
T PF10354_consen 82 NFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKD 127 (166)
T ss_pred eCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 865322 01234577999999999999999996544
|
|
| >COG2933 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.41 E-value=0.35 Score=41.71 Aligned_cols=87 Identities=9% Similarity=0.102 Sum_probs=61.9
Q ss_pred cCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCC-CCCCCEEEEc
Q 048309 65 ARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPK-AKKYDRIISC 143 (288)
Q Consensus 65 ~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~-~~~fD~I~~~ 143 (288)
..+.++...+|+|.-.|+++-.|.++ +-.|++||-.+ |.+ . +-.. +.++-...|...+.+ ....|-.+|.
T Consensus 207 ~rL~~~M~avDLGAcPGGWTyqLVkr-~m~V~aVDng~-ma~---s-L~dt---g~v~h~r~DGfk~~P~r~~idWmVCD 277 (358)
T COG2933 207 KRLAPGMWAVDLGACPGGWTYQLVKR-NMRVYAVDNGP-MAQ---S-LMDT---GQVTHLREDGFKFRPTRSNIDWMVCD 277 (358)
T ss_pred hhhcCCceeeecccCCCccchhhhhc-ceEEEEeccch-hhh---h-hhcc---cceeeeeccCcccccCCCCCceEEee
Confidence 34668999999999999999999997 78999999654 321 1 1222 468889999988874 6789999986
Q ss_pred cchhhhCHhhHHHHHHHHhcccc
Q 048309 144 EMMEAVGHEYMEEYFGCCESLLA 166 (288)
Q Consensus 144 ~~l~~~~~~~~~~~l~~~~~~Lk 166 (288)
-+ +.+...-+.+..+|.
T Consensus 278 mV------EkP~rv~~li~~Wl~ 294 (358)
T COG2933 278 MV------EKPARVAALIAKWLV 294 (358)
T ss_pred hh------cCcHHHHHHHHHHHH
Confidence 43 333444444444444
|
|
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=93.40 E-value=0.54 Score=35.04 Aligned_cols=85 Identities=14% Similarity=0.140 Sum_probs=55.1
Q ss_pred CcccHHHHHHHHc---cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-----CCCCCCEEEEccchhhh
Q 048309 78 CGWGTFAIEVVRQ---TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-----KAKKYDRIISCEMMEAV 149 (288)
Q Consensus 78 cG~G~~~~~la~~---~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-----~~~~fD~I~~~~~l~~~ 149 (288)
||.|..+..+++. .+..|+.+|.+++.++.+++. .+.++.+|..+.. .-.++|.+++...-
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~--------~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~--- 72 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE--------GVEVIYGDATDPEVLERAGIEKADAVVILTDD--- 72 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT--------TSEEEES-TTSHHHHHHTTGGCESEEEEESSS---
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc--------ccccccccchhhhHHhhcCccccCEEEEccCC---
Confidence 5556666666664 344899999999987766543 2689999998854 33678888876431
Q ss_pred CHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 150 GHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 150 ~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
......+....+-+.|...+++..
T Consensus 73 --d~~n~~~~~~~r~~~~~~~ii~~~ 96 (116)
T PF02254_consen 73 --DEENLLIALLARELNPDIRIIARV 96 (116)
T ss_dssp --HHHHHHHHHHHHHHTTTSEEEEEE
T ss_pred --HHHHHHHHHHHHHHCCCCeEEEEE
Confidence 223334445556677777877643
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins | Back alignment and domain information |
|---|
Probab=93.34 E-value=1.5 Score=39.02 Aligned_cols=98 Identities=20% Similarity=0.170 Sum_probs=63.0
Q ss_pred HHcCCCCCCEEEEECCc-ccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC--CCCCCCE
Q 048309 63 EKARVSKEHEVLEIGCG-WGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP--KAKKYDR 139 (288)
Q Consensus 63 ~~~~~~~~~~vLDiGcG-~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~--~~~~fD~ 139 (288)
......++.+||-.||| .|..+..+++..+.+|++++.+++..+.+++. |.. .++...-.... ..+.+|+
T Consensus 156 ~~~~~~~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~----g~~---~~~~~~~~~~~~~~~~~~d~ 228 (330)
T cd08245 156 RDAGPRPGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARKL----GAD---EVVDSGAELDEQAAAGGADV 228 (330)
T ss_pred HhhCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh----CCc---EEeccCCcchHHhccCCCCE
Confidence 33567788899999987 58888888887778999999999887766432 221 12211111111 2246898
Q ss_pred EEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 140 IISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 140 I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
++....- ...+..+.+.|+++|.++...
T Consensus 229 vi~~~~~--------~~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 229 ILVTVVS--------GAAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred EEECCCc--------HHHHHHHHHhcccCCEEEEEC
Confidence 8864211 224556678899999988753
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an |
| >cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity | Back alignment and domain information |
|---|
Probab=93.29 E-value=1 Score=39.88 Aligned_cols=97 Identities=14% Similarity=0.209 Sum_probs=64.0
Q ss_pred HHHcCCCCCCEEEEEC--CcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCC----C--C
Q 048309 62 IEKARVSKEHEVLEIG--CGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQL----P--K 133 (288)
Q Consensus 62 ~~~~~~~~~~~vLDiG--cG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~----~--~ 133 (288)
.......++.+||=.| .|.|..+..+++..+.+|++++.+++..+.+++ .|.. .++...-.++ . .
T Consensus 136 ~~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~----~Ga~---~vi~~~~~~~~~~v~~~~ 208 (329)
T cd08294 136 LEICKPKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKE----LGFD---AVFNYKTVSLEEALKEAA 208 (329)
T ss_pred HHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCCC---EEEeCCCccHHHHHHHHC
Confidence 3455677899999888 346888899998878899999988887777654 2431 2222111111 1 2
Q ss_pred CCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 134 AKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 134 ~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
...+|+|+-.-. ...+....+.|+++|+++..
T Consensus 209 ~~gvd~vld~~g---------~~~~~~~~~~l~~~G~iv~~ 240 (329)
T cd08294 209 PDGIDCYFDNVG---------GEFSSTVLSHMNDFGRVAVC 240 (329)
T ss_pred CCCcEEEEECCC---------HHHHHHHHHhhccCCEEEEE
Confidence 256898885321 13456677889999998764
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac |
| >cd08300 alcohol_DH_class_III class III alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=93.20 E-value=0.57 Score=42.68 Aligned_cols=100 Identities=20% Similarity=0.224 Sum_probs=64.0
Q ss_pred HHHcCCCCCCEEEEECCcc-cHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEc-c----cCC-CC-
Q 048309 62 IEKARVSKEHEVLEIGCGW-GTFAIEVVRQTGC-NYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLC-D----YRQ-LP- 132 (288)
Q Consensus 62 ~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~-d----~~~-~~- 132 (288)
.+....+++.+||=+|+|. |..+..+++..+. .|+++|.+++..+.+++ .|.. .++.. + ..+ +.
T Consensus 179 ~~~~~~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~----lGa~---~~i~~~~~~~~~~~~v~~ 251 (368)
T cd08300 179 LNTAKVEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKK----FGAT---DCVNPKDHDKPIQQVLVE 251 (368)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCC---EEEcccccchHHHHHHHH
Confidence 3455677899999999875 7788888887677 79999999988877754 2431 12211 1 111 00
Q ss_pred -CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccC-cEEEEEee
Q 048309 133 -KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKD-GLLVLQFS 176 (288)
Q Consensus 133 -~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~ 176 (288)
..+.+|+|+-.-. . ...+....+.|+++ |+++....
T Consensus 252 ~~~~g~d~vid~~g--~------~~~~~~a~~~l~~~~G~~v~~g~ 289 (368)
T cd08300 252 MTDGGVDYTFECIG--N------VKVMRAALEACHKGWGTSVIIGV 289 (368)
T ss_pred HhCCCCcEEEECCC--C------hHHHHHHHHhhccCCCeEEEEcc
Confidence 1236898886321 0 23555666888887 98887543
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim |
| >cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase | Back alignment and domain information |
|---|
Probab=93.16 E-value=0.27 Score=44.34 Aligned_cols=101 Identities=17% Similarity=0.155 Sum_probs=63.2
Q ss_pred HHcCCCCCCEEEEECCcc-cHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccC----CCCCCCC
Q 048309 63 EKARVSKEHEVLEIGCGW-GTFAIEVVRQTGC-NYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYR----QLPKAKK 136 (288)
Q Consensus 63 ~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~----~~~~~~~ 136 (288)
......++.+||=.|+|. |..+..+++..+. .|++++.+++..+.+++. |...-+.....++. +......
T Consensus 166 ~~~~~~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~----ga~~~i~~~~~~~~~~l~~~~~~~~ 241 (351)
T cd08233 166 RRSGFKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEEL----GATIVLDPTEVDVVAEVRKLTGGGG 241 (351)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----CCCEEECCCccCHHHHHHHHhCCCC
Confidence 455677888999888764 7777788887677 899999999887777542 33110111111111 1112245
Q ss_pred CCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 137 YDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 137 fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
+|+++-...- ...++.+.+.|+++|.++...
T Consensus 242 ~d~vid~~g~--------~~~~~~~~~~l~~~G~~v~~g 272 (351)
T cd08233 242 VDVSFDCAGV--------QATLDTAIDALRPRGTAVNVA 272 (351)
T ss_pred CCEEEECCCC--------HHHHHHHHHhccCCCEEEEEc
Confidence 9999864221 224566678899999988744
|
(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. |
| >cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=93.14 E-value=0.23 Score=44.81 Aligned_cols=98 Identities=18% Similarity=0.182 Sum_probs=63.4
Q ss_pred HHcCCCCCCEEEEECCcc-cHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCC-------CCC
Q 048309 63 EKARVSKEHEVLEIGCGW-GTFAIEVVRQTGC-NYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQ-------LPK 133 (288)
Q Consensus 63 ~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~-------~~~ 133 (288)
.....+++.+||-.|+|. |..+..+++..+. .++++|.+++..+.+++ .|.. .++..+-.+ +..
T Consensus 160 ~~~~~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~g~~---~~v~~~~~~~~~~i~~~~~ 232 (351)
T cd08285 160 ELANIKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKE----YGAT---DIVDYKNGDVVEQILKLTG 232 (351)
T ss_pred HccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCc---eEecCCCCCHHHHHHHHhC
Confidence 445677889999999874 7788888887666 59999998877766654 3431 222211111 112
Q ss_pred CCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 134 AKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 134 ~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
...+|+++.... -...+..+.+.|+++|+++...
T Consensus 233 ~~~~d~vld~~g--------~~~~~~~~~~~l~~~G~~v~~g 266 (351)
T cd08285 233 GKGVDAVIIAGG--------GQDTFEQALKVLKPGGTISNVN 266 (351)
T ss_pred CCCCcEEEECCC--------CHHHHHHHHHHhhcCCEEEEec
Confidence 346999885311 1235667778899999988643
|
This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases | Back alignment and domain information |
|---|
Probab=93.08 E-value=0.3 Score=43.78 Aligned_cols=97 Identities=21% Similarity=0.222 Sum_probs=62.1
Q ss_pred HcCCCCCCEEEEECCcc-cHHHHHHHHccCCE-EEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcc------cCCCCCCC
Q 048309 64 KARVSKEHEVLEIGCGW-GTFAIEVVRQTGCN-YTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCD------YRQLPKAK 135 (288)
Q Consensus 64 ~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~~-v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d------~~~~~~~~ 135 (288)
.....++.+||-.|+|. |..+..+++..+.+ +++++.+++..+.+++ .|. ..++..+ +.......
T Consensus 154 ~~~~~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~----~g~---~~~~~~~~~~~~~~~~~~~~~ 226 (343)
T cd08236 154 LAGITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARE----LGA---DDTINPKEEDVEKVRELTEGR 226 (343)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCC---CEEecCccccHHHHHHHhCCC
Confidence 45567888999999876 77888888876776 9999988877665533 232 1222211 11112334
Q ss_pred CCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 136 KYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 136 ~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
.+|+++.... ....+..+.+.|+++|+++...
T Consensus 227 ~~d~vld~~g--------~~~~~~~~~~~l~~~G~~v~~g 258 (343)
T cd08236 227 GADLVIEAAG--------SPATIEQALALARPGGKVVLVG 258 (343)
T ss_pred CCCEEEECCC--------CHHHHHHHHHHhhcCCEEEEEc
Confidence 5999986411 1234566678899999987643
|
This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast |
| >COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=92.91 E-value=0.99 Score=40.53 Aligned_cols=107 Identities=17% Similarity=0.156 Sum_probs=70.9
Q ss_pred HHHHHHcCCCCCCEEEEECCcc-cHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEc----ccCCCC
Q 048309 59 SLLIEKARVSKEHEVLEIGCGW-GTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLC----DYRQLP 132 (288)
Q Consensus 59 ~~l~~~~~~~~~~~vLDiGcG~-G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~----d~~~~~ 132 (288)
...+..++.++|.+|.-+|||. |..++.-|+. ...+++++|+++..++.|++. |- .++++. |+.+..
T Consensus 175 Gav~nta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~f----GA---T~~vn~~~~~~vv~~i 247 (366)
T COG1062 175 GAVVNTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKF----GA---THFVNPKEVDDVVEAI 247 (366)
T ss_pred HHhhhcccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhc----CC---ceeecchhhhhHHHHH
Confidence 5667788889999999999996 7777777766 456899999999999988875 32 233333 222211
Q ss_pred ---CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCCC
Q 048309 133 ---KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPD 180 (288)
Q Consensus 133 ---~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 180 (288)
.++..|.++- ..+ + ...++.....+.++|..++.-...+.
T Consensus 248 ~~~T~gG~d~~~e-----~~G--~-~~~~~~al~~~~~~G~~v~iGv~~~~ 290 (366)
T COG1062 248 VELTDGGADYAFE-----CVG--N-VEVMRQALEATHRGGTSVIIGVAGAG 290 (366)
T ss_pred HHhcCCCCCEEEE-----ccC--C-HHHHHHHHHHHhcCCeEEEEecCCCC
Confidence 3346777643 221 1 22555556677779998886655444
|
|
| >cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=92.82 E-value=0.75 Score=41.87 Aligned_cols=103 Identities=18% Similarity=0.194 Sum_probs=63.1
Q ss_pred HHHcCCCCCCEEEEECCcc-cHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcc--cCC-CC--CC
Q 048309 62 IEKARVSKEHEVLEIGCGW-GTFAIEVVRQTGC-NYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCD--YRQ-LP--KA 134 (288)
Q Consensus 62 ~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d--~~~-~~--~~ 134 (288)
.+...+.++.+||=+|+|. |..+..+++..+. +|+++|.+++..+.+++. |...-+.....+ ..+ +. ..
T Consensus 177 ~~~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~~----ga~~~i~~~~~~~~~~~~~~~~~~ 252 (365)
T cd08277 177 WNTAKVEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEF----GATDFINPKDSDKPVSEVIREMTG 252 (365)
T ss_pred HhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc----CCCcEeccccccchHHHHHHHHhC
Confidence 3445677899999999875 7777888887666 799999998887777542 331001111100 000 11 12
Q ss_pred CCCCEEEEccchhhhCHhhHHHHHHHHhcccccC-cEEEEEee
Q 048309 135 KKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKD-GLLVLQFS 176 (288)
Q Consensus 135 ~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~ 176 (288)
..+|+|+-.-. -...+....+.|+++ |++++...
T Consensus 253 ~g~d~vid~~g--------~~~~~~~~~~~l~~~~G~~v~~g~ 287 (365)
T cd08277 253 GGVDYSFECTG--------NADLMNEALESTKLGWGVSVVVGV 287 (365)
T ss_pred CCCCEEEECCC--------ChHHHHHHHHhcccCCCEEEEEcC
Confidence 46899885321 023456667888886 98887543
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i |
| >KOG2912 consensus Predicted DNA methylase [Function unknown] | Back alignment and domain information |
|---|
Probab=92.80 E-value=0.3 Score=43.27 Aligned_cols=95 Identities=13% Similarity=0.159 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHcCCCCCCE--EEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEccc
Q 048309 52 VAQMRKHSLLIEKARVSKEHE--VLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDY 128 (288)
Q Consensus 52 ~a~~~~~~~l~~~~~~~~~~~--vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~ 128 (288)
..+...+..++..-....+.. =+|||.|.-..--.+-.. .++...++|++...+..|+.+++++++.+.+.++..+.
T Consensus 83 ~nYihwI~DLLss~q~~k~~i~~GiDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~ 162 (419)
T KOG2912|consen 83 LNYIHWIEDLLSSQQSDKSTIRRGIDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEP 162 (419)
T ss_pred hhhHHHHHHHhhcccCCCcceeeeeeccCchhhhHHhhhchhccceeeeeeccccccchhhccccccccccceeeEEecc
Confidence 344455566665544333322 378888775543333222 67889999999999999999999999988888887755
Q ss_pred CCC--------CCCCCCCEEEEccch
Q 048309 129 RQL--------PKAKKYDRIISCEMM 146 (288)
Q Consensus 129 ~~~--------~~~~~fD~I~~~~~l 146 (288)
.+. .++..||.++|+..+
T Consensus 163 ~ktll~d~~~~~~e~~ydFcMcNPPF 188 (419)
T KOG2912|consen 163 QKTLLMDALKEESEIIYDFCMCNPPF 188 (419)
T ss_pred hhhcchhhhccCccceeeEEecCCch
Confidence 331 134569999998654
|
|
| >cd05285 sorbitol_DH Sorbitol dehydrogenase | Back alignment and domain information |
|---|
Probab=92.77 E-value=0.4 Score=43.09 Aligned_cols=98 Identities=20% Similarity=0.236 Sum_probs=64.0
Q ss_pred HHcCCCCCCEEEEECCcc-cHHHHHHHHccCCE-EEEEcCCHHHHHHHHHHHHHcCCCCceEEEEccc----------CC
Q 048309 63 EKARVSKEHEVLEIGCGW-GTFAIEVVRQTGCN-YTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDY----------RQ 130 (288)
Q Consensus 63 ~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~~-v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~----------~~ 130 (288)
....+.++.+||-.|+|. |..+..+++..+.+ |++++.+++..+.+++. |.. .++..+- .+
T Consensus 156 ~~~~~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~----g~~---~vi~~~~~~~~~~~~~~~~ 228 (343)
T cd05285 156 RRAGVRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKEL----GAT---HTVNVRTEDTPESAEKIAE 228 (343)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc----CCc---EEeccccccchhHHHHHHH
Confidence 556778899999888876 78888888887776 89998888877766442 321 2221111 11
Q ss_pred CCCCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 131 LPKAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 131 ~~~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
......+|+|+-...- ...+....+.|+++|+++...
T Consensus 229 ~~~~~~~d~vld~~g~--------~~~~~~~~~~l~~~G~~v~~g 265 (343)
T cd05285 229 LLGGKGPDVVIECTGA--------ESCIQTAIYATRPGGTVVLVG 265 (343)
T ss_pred HhCCCCCCEEEECCCC--------HHHHHHHHHHhhcCCEEEEEc
Confidence 2233569999864221 124556678999999988643
|
Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=92.71 E-value=0.42 Score=47.34 Aligned_cols=105 Identities=14% Similarity=0.161 Sum_probs=64.0
Q ss_pred CCCEEEEECCcccHHHHHHHHc--------c-----CCEEEEEcCCH---HHHHHH-----------HHHHHH-----cC
Q 048309 69 KEHEVLEIGCGWGTFAIEVVRQ--------T-----GCNYTGITLSA---EQMKYA-----------EMKVNE-----AG 116 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~~la~~--------~-----~~~v~giD~s~---~~~~~a-----------~~~~~~-----~g 116 (288)
+.-+|+|+|-|+|.+.....+. + .-+++++|..| +.+..+ ++..+. .|
T Consensus 57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 136 (662)
T PRK01747 57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG 136 (662)
T ss_pred CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence 4468999999999976555421 1 23789999643 333322 222211 12
Q ss_pred C------CC--ceEEEEcccCCCC--CCCCCCEEEEccchhhhCHhh-HHHHHHHHhcccccCcEEEE
Q 048309 117 L------QD--HIRLYLCDYRQLP--KAKKYDRIISCEMMEAVGHEY-MEEYFGCCESLLAKDGLLVL 173 (288)
Q Consensus 117 ~------~~--~v~~~~~d~~~~~--~~~~fD~I~~~~~l~~~~~~~-~~~~l~~~~~~LkpgG~l~~ 173 (288)
+ .. ++++..+|+.+.- ....+|+++..+.-..-.++- -.++++.+.++++|||++.-
T Consensus 137 ~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t 204 (662)
T PRK01747 137 CHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLAT 204 (662)
T ss_pred ceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEE
Confidence 1 01 3457778887633 335799999875322111111 26799999999999998874
|
|
| >TIGR00936 ahcY adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=92.55 E-value=0.96 Score=41.98 Aligned_cols=98 Identities=14% Similarity=0.126 Sum_probs=60.4
Q ss_pred HHHHHHcC-CCCCCEEEEECCcc-cHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCC
Q 048309 59 SLLIEKAR-VSKEHEVLEIGCGW-GTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKK 136 (288)
Q Consensus 59 ~~l~~~~~-~~~~~~vLDiGcG~-G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~ 136 (288)
..+.+..+ ...|.+|+=+|+|. |......++..+++|+++|.++.....+. ..|. .+. +..+. -..
T Consensus 183 ~~i~r~t~~~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~----~~G~----~v~--~leea--l~~ 250 (406)
T TIGR00936 183 DGILRATNLLIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAA----MDGF----RVM--TMEEA--AKI 250 (406)
T ss_pred HHHHHhcCCCCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHH----hcCC----EeC--CHHHH--Hhc
Confidence 33444333 25788999999997 77777777667889999999886543332 2232 222 22221 145
Q ss_pred CCEEEEccchhhhCHhhHHHHHH-HHhcccccCcEEEEEee
Q 048309 137 YDRIISCEMMEAVGHEYMEEYFG-CCESLLAKDGLLVLQFS 176 (288)
Q Consensus 137 fD~I~~~~~l~~~~~~~~~~~l~-~~~~~LkpgG~l~~~~~ 176 (288)
.|+|++...- ...+. +....+|+|++++....
T Consensus 251 aDVVItaTG~--------~~vI~~~~~~~mK~GailiN~G~ 283 (406)
T TIGR00936 251 GDIFITATGN--------KDVIRGEHFENMKDGAIVANIGH 283 (406)
T ss_pred CCEEEECCCC--------HHHHHHHHHhcCCCCcEEEEECC
Confidence 7998874221 22333 46688999998887543
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). |
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=92.40 E-value=0.15 Score=44.94 Aligned_cols=55 Identities=15% Similarity=0.227 Sum_probs=39.8
Q ss_pred ceEEEEcccCCCC---CCCCCCEEEEccchhh------h----CH----hhHHHHHHHHhcccccCcEEEEE
Q 048309 120 HIRLYLCDYRQLP---KAKKYDRIISCEMMEA------V----GH----EYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 120 ~v~~~~~d~~~~~---~~~~fD~I~~~~~l~~------~----~~----~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
+.+++++|..+.. +++++|+|++...+.- . .. .-....+..+.++|||||.+++.
T Consensus 8 ~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~ 79 (284)
T PRK11524 8 AKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIM 79 (284)
T ss_pred CCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 4578889888742 5679999999755321 0 00 12357889999999999999985
|
|
| >cd08234 threonine_DH_like L-threonine dehydrogenase | Back alignment and domain information |
|---|
Probab=92.39 E-value=1.7 Score=38.62 Aligned_cols=98 Identities=13% Similarity=0.157 Sum_probs=63.4
Q ss_pred HHcCCCCCCEEEEECCcc-cHHHHHHHHccCCE-EEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCC-----CCCC
Q 048309 63 EKARVSKEHEVLEIGCGW-GTFAIEVVRQTGCN-YTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQL-----PKAK 135 (288)
Q Consensus 63 ~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~~-v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~-----~~~~ 135 (288)
......++.+||-+|+|. |..+..+++..+.+ +++++.+++..+.+++. +.. .++..+-.+. ....
T Consensus 153 ~~~~~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~----g~~---~~~~~~~~~~~~~~~~~~~ 225 (334)
T cd08234 153 DLLGIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKL----GAT---ETVDPSREDPEAQKEDNPY 225 (334)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh----CCe---EEecCCCCCHHHHHHhcCC
Confidence 455677889999999764 77778888876666 89999998877766432 321 2222221111 1335
Q ss_pred CCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 136 KYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 136 ~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
.+|+++.... ....+..+.+.|+++|.++...
T Consensus 226 ~vd~v~~~~~--------~~~~~~~~~~~l~~~G~~v~~g 257 (334)
T cd08234 226 GFDVVIEATG--------VPKTLEQAIEYARRGGTVLVFG 257 (334)
T ss_pred CCcEEEECCC--------ChHHHHHHHHHHhcCCEEEEEe
Confidence 7999996421 1235556678889999988643
|
L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. |
| >cd05278 FDH_like Formaldehyde dehydrogenases | Back alignment and domain information |
|---|
Probab=92.35 E-value=0.3 Score=43.75 Aligned_cols=96 Identities=21% Similarity=0.251 Sum_probs=60.5
Q ss_pred HcCCCCCCEEEEECCc-ccHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEc---cc----CCCCCC
Q 048309 64 KARVSKEHEVLEIGCG-WGTFAIEVVRQTGC-NYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLC---DY----RQLPKA 134 (288)
Q Consensus 64 ~~~~~~~~~vLDiGcG-~G~~~~~la~~~~~-~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~---d~----~~~~~~ 134 (288)
....+++.+||..|+| .|..+..+++..+. .+++++.++...+.+++. |. ..++.. +. ......
T Consensus 162 ~~~~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~----g~---~~vi~~~~~~~~~~i~~~~~~ 234 (347)
T cd05278 162 LAGIKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEA----GA---TDIINPKNGDIVEQILELTGG 234 (347)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHh----CC---cEEEcCCcchHHHHHHHHcCC
Confidence 3456678899988876 37788888887664 788998887776665542 22 122211 11 111233
Q ss_pred CCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 135 KKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 135 ~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
+.+|+++....- ...+.+..+.|+++|+++..
T Consensus 235 ~~~d~vld~~g~--------~~~~~~~~~~l~~~G~~v~~ 266 (347)
T cd05278 235 RGVDCVIEAVGF--------EETFEQAVKVVRPGGTIANV 266 (347)
T ss_pred CCCcEEEEccCC--------HHHHHHHHHHhhcCCEEEEE
Confidence 579999864211 13566667889999998864
|
Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall |
| >cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase | Back alignment and domain information |
|---|
Probab=92.09 E-value=1.1 Score=40.07 Aligned_cols=97 Identities=18% Similarity=0.228 Sum_probs=64.5
Q ss_pred HHcCCCCCCEEEEECC--cccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEE-c---ccCC-CC--C
Q 048309 63 EKARVSKEHEVLEIGC--GWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYL-C---DYRQ-LP--K 133 (288)
Q Consensus 63 ~~~~~~~~~~vLDiGc--G~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~-~---d~~~-~~--~ 133 (288)
......+|.+||=.|+ |.|..+..+++..|.+|++++.+++..+.+++.+ |.. .++. . +..+ +. .
T Consensus 145 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~l---Ga~---~vi~~~~~~~~~~~i~~~~ 218 (338)
T cd08295 145 EVCKPKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNKL---GFD---DAFNYKEEPDLDAALKRYF 218 (338)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc---CCc---eeEEcCCcccHHHHHHHhC
Confidence 4456788999999986 4688889999887889999998888777776532 331 2222 1 2111 11 1
Q ss_pred CCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 134 AKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 134 ~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
...+|+|+-. .+ ...+..+.+.|+++|+++..
T Consensus 219 ~~gvd~v~d~-----~g----~~~~~~~~~~l~~~G~iv~~ 250 (338)
T cd08295 219 PNGIDIYFDN-----VG----GKMLDAVLLNMNLHGRIAAC 250 (338)
T ss_pred CCCcEEEEEC-----CC----HHHHHHHHHHhccCcEEEEe
Confidence 2568988753 21 13456677999999998864
|
This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in |
| >PLN02586 probable cinnamyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=91.96 E-value=0.82 Score=41.61 Aligned_cols=95 Identities=21% Similarity=0.219 Sum_probs=57.6
Q ss_pred CCCCCEEEEECCcc-cHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEE-cccCCCC-CCCCCCEEEEc
Q 048309 67 VSKEHEVLEIGCGW-GTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYL-CDYRQLP-KAKKYDRIISC 143 (288)
Q Consensus 67 ~~~~~~vLDiGcG~-G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~-~d~~~~~-~~~~fD~I~~~ 143 (288)
..++.+||-.|+|. |..+..+++..+.++++++.+++....+ .++.|.. .++. .+...+. ..+.+|+|+-.
T Consensus 181 ~~~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~---~~~~Ga~---~vi~~~~~~~~~~~~~~~D~vid~ 254 (360)
T PLN02586 181 TEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEA---INRLGAD---SFLVSTDPEKMKAAIGTMDYIIDT 254 (360)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhH---HHhCCCc---EEEcCCCHHHHHhhcCCCCEEEEC
Confidence 45788999899885 8888888888778898888776543222 1223431 1221 1111111 11358888853
Q ss_pred cchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 144 EMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 144 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
.. -...+..+.+.|++||+++...
T Consensus 255 ~g--------~~~~~~~~~~~l~~~G~iv~vG 278 (360)
T PLN02586 255 VS--------AVHALGPLLGLLKVNGKLITLG 278 (360)
T ss_pred CC--------CHHHHHHHHHHhcCCcEEEEeC
Confidence 22 1224566678999999998753
|
|
| >PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=91.96 E-value=0.53 Score=43.30 Aligned_cols=51 Identities=16% Similarity=0.147 Sum_probs=42.4
Q ss_pred HHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHH
Q 048309 62 IEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVN 113 (288)
Q Consensus 62 ~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~ 113 (288)
.+.+++.++.+||-|.+|......++.+. ..+|++||+||.+....+-+..
T Consensus 28 ~~aL~i~~~d~vl~ItSaG~N~L~yL~~~-P~~I~aVDlNp~Q~aLleLKlA 78 (380)
T PF11899_consen 28 MEALNIGPDDRVLTITSAGCNALDYLLAG-PKRIHAVDLNPAQNALLELKLA 78 (380)
T ss_pred HHHhCCCCCCeEEEEccCCchHHHHHhcC-CceEEEEeCCHHHHHHHHHHHH
Confidence 45677889999999999888888887775 5699999999999988776654
|
This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length. |
| >cd08301 alcohol_DH_plants Plant alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=91.91 E-value=1.7 Score=39.59 Aligned_cols=101 Identities=19% Similarity=0.192 Sum_probs=63.3
Q ss_pred HHHHcCCCCCCEEEEECCcc-cHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcc-----cCC-CC
Q 048309 61 LIEKARVSKEHEVLEIGCGW-GTFAIEVVRQTGC-NYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCD-----YRQ-LP 132 (288)
Q Consensus 61 l~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d-----~~~-~~ 132 (288)
+.+.....++.+||=.|+|. |..+..+++..+. +|+++|.+++..+.+++ .|.. .++..+ ..+ +.
T Consensus 179 ~~~~~~~~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~----~Ga~---~~i~~~~~~~~~~~~v~ 251 (369)
T cd08301 179 AWNVAKVKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKK----FGVT---EFVNPKDHDKPVQEVIA 251 (369)
T ss_pred HHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCc---eEEcccccchhHHHHHH
Confidence 33445677899999999875 7778888887676 79999999988777654 3431 222111 100 11
Q ss_pred --CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccC-cEEEEEee
Q 048309 133 --KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKD-GLLVLQFS 176 (288)
Q Consensus 133 --~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~ 176 (288)
..+.+|+++-.-. ....+....+.+++| |++++...
T Consensus 252 ~~~~~~~d~vid~~G--------~~~~~~~~~~~~~~~~g~~v~~g~ 290 (369)
T cd08301 252 EMTGGGVDYSFECTG--------NIDAMISAFECVHDGWGVTVLLGV 290 (369)
T ss_pred HHhCCCCCEEEECCC--------ChHHHHHHHHHhhcCCCEEEEECc
Confidence 2236888875311 123455556788996 98887543
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the |
| >cd08293 PTGR2 Prostaglandin reductase | Back alignment and domain information |
|---|
Probab=91.85 E-value=2.1 Score=38.31 Aligned_cols=97 Identities=18% Similarity=0.212 Sum_probs=61.3
Q ss_pred HHcCCCCC--CEEEEECC--cccHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCC----C-
Q 048309 63 EKARVSKE--HEVLEIGC--GWGTFAIEVVRQTGC-NYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQL----P- 132 (288)
Q Consensus 63 ~~~~~~~~--~~vLDiGc--G~G~~~~~la~~~~~-~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~----~- 132 (288)
+.....++ .+||=.|+ |.|..+..+++..++ +|++++.+++..+.+++. .|.. .++..+-.++ .
T Consensus 146 ~~~~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~---lGa~---~vi~~~~~~~~~~i~~ 219 (345)
T cd08293 146 EKGHITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSE---LGFD---AAINYKTDNVAERLRE 219 (345)
T ss_pred HhccCCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHh---cCCc---EEEECCCCCHHHHHHH
Confidence 33345555 89998885 468899999988777 799999998877666553 2431 2222211111 0
Q ss_pred -CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 133 -KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 133 -~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
.+..+|+|+....- ..+..+.+.|+++|+++..
T Consensus 220 ~~~~gvd~vid~~g~---------~~~~~~~~~l~~~G~iv~~ 253 (345)
T cd08293 220 LCPEGVDVYFDNVGG---------EISDTVISQMNENSHIILC 253 (345)
T ss_pred HCCCCceEEEECCCc---------HHHHHHHHHhccCCEEEEE
Confidence 12569999853211 1235667889999999864
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid |
| >PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs [] | Back alignment and domain information |
|---|
Probab=91.83 E-value=1.8 Score=39.74 Aligned_cols=116 Identities=11% Similarity=0.216 Sum_probs=72.2
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccH----HHHHHHHc----cCCEEEEEcC----CHHHHHHHHHHH----HHcCCCCc
Q 048309 57 KHSLLIEKARVSKEHEVLEIGCGWGT----FAIEVVRQ----TGCNYTGITL----SAEQMKYAEMKV----NEAGLQDH 120 (288)
Q Consensus 57 ~~~~l~~~~~~~~~~~vLDiGcG~G~----~~~~la~~----~~~~v~giD~----s~~~~~~a~~~~----~~~g~~~~ 120 (288)
.-+.|++.+.-...-+|+|+|.|.|. +...|+.+ +.-++|||+. +...++.+.+++ +..|++
T Consensus 98 aNqaIleA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~-- 175 (374)
T PF03514_consen 98 ANQAILEAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVP-- 175 (374)
T ss_pred hhHHHHHHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCcc--
Confidence 33667777776677799999999885 55566665 3348999999 777777666654 445775
Q ss_pred eEEEEc---ccCCCC------CCCCCCEEEEccchhhhCH-----h-hHHHHHHHHhcccccCcEEEEEe
Q 048309 121 IRLYLC---DYRQLP------KAKKYDRIISCEMMEAVGH-----E-YMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 121 v~~~~~---d~~~~~------~~~~fD~I~~~~~l~~~~~-----~-~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
.+|... +.+++. .++.+=+|-|...++|+.. + ....+++.+ +.|+|.-++++..
T Consensus 176 fef~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~i-r~L~P~vvv~~E~ 244 (374)
T PF03514_consen 176 FEFHPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVI-RSLNPKVVVLVEQ 244 (374)
T ss_pred EEEEecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHH-HhcCCCEEEEEee
Confidence 455543 444432 1222334445566788731 1 234566555 6789997666643
|
Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions. |
| >cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=91.82 E-value=0.5 Score=42.94 Aligned_cols=100 Identities=21% Similarity=0.232 Sum_probs=63.0
Q ss_pred HHHHcCCCCCCEEEEECCc-ccHHHHHHHHccCCE-EEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccC-------CC
Q 048309 61 LIEKARVSKEHEVLEIGCG-WGTFAIEVVRQTGCN-YTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYR-------QL 131 (288)
Q Consensus 61 l~~~~~~~~~~~vLDiGcG-~G~~~~~la~~~~~~-v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~-------~~ 131 (288)
+.......++.+||-.|+| .|..+..+++..+.. |++++.++...+.+++ .|.. .++..+-. .+
T Consensus 174 ~~~~~~~~~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~~~~----~g~~---~vv~~~~~~~~~~l~~~ 246 (363)
T cd08279 174 VVNTARVRPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELARR----FGAT---HTVNASEDDAVEAVRDL 246 (363)
T ss_pred HHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH----hCCe---EEeCCCCccHHHHHHHH
Confidence 3344556788899988886 477778888876765 9999988887766643 2331 22222111 11
Q ss_pred CCCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 132 PKAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 132 ~~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
.....+|+++..-. ....+..+.+.|+++|+++...
T Consensus 247 ~~~~~vd~vld~~~--------~~~~~~~~~~~l~~~G~~v~~g 282 (363)
T cd08279 247 TDGRGADYAFEAVG--------RAATIRQALAMTRKGGTAVVVG 282 (363)
T ss_pred cCCCCCCEEEEcCC--------ChHHHHHHHHHhhcCCeEEEEe
Confidence 12456998885321 0234566678899999988653
|
Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me |
| >cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH) | Back alignment and domain information |
|---|
Probab=91.77 E-value=1.3 Score=40.08 Aligned_cols=101 Identities=21% Similarity=0.212 Sum_probs=60.8
Q ss_pred HHcCC-CCCCEEEEECCcc-cHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEccc-------CCCC
Q 048309 63 EKARV-SKEHEVLEIGCGW-GTFAIEVVRQTGC-NYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDY-------RQLP 132 (288)
Q Consensus 63 ~~~~~-~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~-------~~~~ 132 (288)
..+.. .++.+||=.|+|. |..+..+++..+. +|++++.+++..+.+++ .|...-+.....+. ....
T Consensus 170 ~~~~~~~~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~~i~~~~ 245 (361)
T cd08231 170 DRAGPVGAGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELARE----FGADATIDIDELPDPQRRAIVRDIT 245 (361)
T ss_pred HhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCCeEEcCcccccHHHHHHHHHHh
Confidence 33443 3788898888774 7777888887777 89999988877665542 34321011111111 1111
Q ss_pred CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 133 KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 133 ~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
....+|+++-...- ...+....+.|+++|+++...
T Consensus 246 ~~~~~d~vid~~g~--------~~~~~~~~~~l~~~G~~v~~g 280 (361)
T cd08231 246 GGRGADVVIEASGH--------PAAVPEGLELLRRGGTYVLVG 280 (361)
T ss_pred CCCCCcEEEECCCC--------hHHHHHHHHHhccCCEEEEEc
Confidence 23569999854210 224455668899999998643
|
This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino |
| >TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent | Back alignment and domain information |
|---|
Probab=91.48 E-value=0.61 Score=43.10 Aligned_cols=107 Identities=17% Similarity=0.113 Sum_probs=65.3
Q ss_pred HHcCCCCCCEEEEECCcc-cHHHHHHHHccCCE-EEEEcCCHHHHHHHHHHHHHcCCCCceEEEEc---ccCC----CCC
Q 048309 63 EKARVSKEHEVLEIGCGW-GTFAIEVVRQTGCN-YTGITLSAEQMKYAEMKVNEAGLQDHIRLYLC---DYRQ----LPK 133 (288)
Q Consensus 63 ~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~~-v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~---d~~~----~~~ 133 (288)
......++.+||=.|+|. |..+..+++..+.+ ++.+|.+++..+.+++. |.. .+... +..+ ...
T Consensus 179 ~~~~~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~----Ga~---~v~~~~~~~~~~~v~~~~~ 251 (393)
T TIGR02819 179 VTAGVGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSF----GCE---TVDLSKDATLPEQIEQILG 251 (393)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHc----CCe---EEecCCcccHHHHHHHHcC
Confidence 345677888888888875 77888888875655 66678888777777653 431 12111 1111 112
Q ss_pred CCCCCEEEEccchhh------hCHhhHHHHHHHHhcccccCcEEEEEee
Q 048309 134 AKKYDRIISCEMMEA------VGHEYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 134 ~~~fD~I~~~~~l~~------~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
...+|+++-.-.-.. ....+....++.+.+.+++||++++.-.
T Consensus 252 ~~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~ 300 (393)
T TIGR02819 252 EPEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGL 300 (393)
T ss_pred CCCCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEeee
Confidence 346898885432110 0001123467888899999999998654
|
Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent. |
| >cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=91.36 E-value=4.7 Score=35.72 Aligned_cols=95 Identities=19% Similarity=0.164 Sum_probs=61.1
Q ss_pred HHcCCCCCCEEEEECCcc-cHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCEEE
Q 048309 63 EKARVSKEHEVLEIGCGW-GTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRII 141 (288)
Q Consensus 63 ~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~ 141 (288)
......++.+||=.|||. |..+..+++..+.++++++.+++..+.+++ .|.. .++.. ... ....+|+++
T Consensus 161 ~~~~~~~~~~vlV~g~g~vg~~~~~la~~~g~~v~~~~~~~~~~~~~~~----~g~~---~~~~~--~~~-~~~~vD~vi 230 (329)
T cd08298 161 KLAGLKPGQRLGLYGFGASAHLALQIARYQGAEVFAFTRSGEHQELARE----LGAD---WAGDS--DDL-PPEPLDAAI 230 (329)
T ss_pred HhhCCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHH----hCCc---EEecc--Ccc-CCCcccEEE
Confidence 455677888888888775 666677777777899999988876666633 2321 11111 111 234688877
Q ss_pred EccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 142 SCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 142 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
.... ....++.+.+.|+++|+++...
T Consensus 231 ~~~~--------~~~~~~~~~~~l~~~G~~v~~g 256 (329)
T cd08298 231 IFAP--------VGALVPAALRAVKKGGRVVLAG 256 (329)
T ss_pred EcCC--------cHHHHHHHHHHhhcCCEEEEEc
Confidence 5311 1235667789999999999643
|
These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha |
| >PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function | Back alignment and domain information |
|---|
Probab=91.13 E-value=2 Score=38.20 Aligned_cols=107 Identities=14% Similarity=0.101 Sum_probs=70.6
Q ss_pred CEEEEECCcccHHHHHHHHcc---------------------CCEEEEEcCCH--HHHHHHHHHHHHc-----------C
Q 048309 71 HEVLEIGCGWGTFAIEVVRQT---------------------GCNYTGITLSA--EQMKYAEMKVNEA-----------G 116 (288)
Q Consensus 71 ~~vLDiGcG~G~~~~~la~~~---------------------~~~v~giD~s~--~~~~~a~~~~~~~-----------g 116 (288)
.+||.||.|.|.=...++... ..+++.||+.+ ..+......+... .
T Consensus 88 ~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~~ 167 (315)
T PF11312_consen 88 LRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAANW 167 (315)
T ss_pred ceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccccc
Confidence 699999999986544443321 13799999764 2333333333322 0
Q ss_pred -C--C--CceEEEEcccCCCCC-C-------CCCCEEEEccchhhh---CHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 117 -L--Q--DHIRLYLCDYRQLPK-A-------KKYDRIISCEMMEAV---GHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 117 -~--~--~~v~~~~~d~~~~~~-~-------~~fD~I~~~~~l~~~---~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
. + -+++|.+.|+..... + .+.++|...+++.-+ +...-.+++.++...++||..++|.+..
T Consensus 168 ~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDSp 244 (315)
T PF11312_consen 168 PLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDSP 244 (315)
T ss_pred ccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcCC
Confidence 0 0 247899999988762 1 257888877776543 3355678999999999999999997643
|
|
| >PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues | Back alignment and domain information |
|---|
Probab=91.09 E-value=0.75 Score=37.67 Aligned_cols=90 Identities=17% Similarity=0.249 Sum_probs=58.9
Q ss_pred CEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCC--CCceEEEEcccCCCC-----C-----CCCC
Q 048309 71 HEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGL--QDHIRLYLCDYRQLP-----K-----AKKY 137 (288)
Q Consensus 71 ~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~--~~~v~~~~~d~~~~~-----~-----~~~f 137 (288)
..|+.+|||-=+....+... .+..++-+|. |++++.-++.++..+. +.+.+++..|+.+.. . .+..
T Consensus 80 ~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~-p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~~~p 158 (183)
T PF04072_consen 80 RQVVNLGAGLDTRAYRLDNPAGGVRWFEVDL-PEVIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDPDRP 158 (183)
T ss_dssp SEEEEET-TT--HHHHHHHTTTTEEEEEEE--HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-TTSE
T ss_pred cEEEEcCCCCCchHHHhhccccceEEEEeCC-HHHHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCCCCC
Confidence 48999999998887777765 3667778885 6677766666665521 123567999998632 1 2344
Q ss_pred CEEEEccchhhhCHhhHHHHHHHH
Q 048309 138 DRIISCEMMEAVGHEYMEEYFGCC 161 (288)
Q Consensus 138 D~I~~~~~l~~~~~~~~~~~l~~~ 161 (288)
-++++-+++.+++++....+++.+
T Consensus 159 tl~i~Egvl~Yl~~~~~~~ll~~i 182 (183)
T PF04072_consen 159 TLFIAEGVLMYLSPEQVDALLRAI 182 (183)
T ss_dssp EEEEEESSGGGS-HHHHHHHHHHH
T ss_pred eEEEEcchhhcCCHHHHHHHHHHh
Confidence 578888899999888888887765
|
It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A .... |
| >cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=91.08 E-value=0.48 Score=43.11 Aligned_cols=98 Identities=15% Similarity=0.186 Sum_probs=62.1
Q ss_pred HHcCCCCCCEEEEECCcc-cHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCC----C--CC
Q 048309 63 EKARVSKEHEVLEIGCGW-GTFAIEVVRQTGC-NYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQL----P--KA 134 (288)
Q Consensus 63 ~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~----~--~~ 134 (288)
....+.++.+||-.|+|. |..+..+++..+. .++++|.++...+.+++ .|. ..++..+-.++ . ..
T Consensus 180 ~~~~~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~----~g~---~~~i~~~~~~~~~~v~~~~~ 252 (365)
T cd08278 180 NVLKPRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKE----LGA---THVINPKEEDLVAAIREITG 252 (365)
T ss_pred hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCC---cEEecCCCcCHHHHHHHHhC
Confidence 344567888999888875 7788888887666 69999999887766644 232 12222111111 0 13
Q ss_pred CCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 135 KKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 135 ~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
..+|+|+-.-.- ...+..+.+.|+++|.++...
T Consensus 253 ~~~d~vld~~g~--------~~~~~~~~~~l~~~G~~v~~g 285 (365)
T cd08278 253 GGVDYALDTTGV--------PAVIEQAVDALAPRGTLALVG 285 (365)
T ss_pred CCCcEEEECCCC--------cHHHHHHHHHhccCCEEEEeC
Confidence 568998853210 234566678899999988743
|
Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu |
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.99 E-value=0.32 Score=45.52 Aligned_cols=110 Identities=11% Similarity=0.103 Sum_probs=75.0
Q ss_pred CCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCC--------CCCCCCCE
Q 048309 69 KEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQL--------PKAKKYDR 139 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~--------~~~~~fD~ 139 (288)
.+..+|-+|-|.|.+...+-.+ +..++++++++|++++.|++.+....- .+..+...|..+. +.+..||+
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~-~r~~V~i~dGl~~~~~~~k~~~~~~~~dv 373 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQS-DRNKVHIADGLDFLQRTAKSQQEDICPDV 373 (482)
T ss_pred ccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhh-hhhhhhHhhchHHHHHHhhccccccCCcE
Confidence 4557788888889998888666 668999999999999999988743211 1345555555432 14568999
Q ss_pred EEEcc---chhhh--CHhh--HHHHHHHHhcccccCcEEEEEeecCC
Q 048309 140 IISCE---MMEAV--GHEY--MEEYFGCCESLLAKDGLLVLQFSSTP 179 (288)
Q Consensus 140 I~~~~---~l~~~--~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~ 179 (288)
++..- -.+.+ ++.. -..++..+...|.|.|.+++.-....
T Consensus 374 l~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~ 420 (482)
T KOG2352|consen 374 LMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTRN 420 (482)
T ss_pred EEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEEecCC
Confidence 88631 11112 1122 35578889999999999998765543
|
|
| >cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=90.97 E-value=3.1 Score=37.17 Aligned_cols=98 Identities=14% Similarity=0.131 Sum_probs=62.3
Q ss_pred HHcCCCCCCEEEEECCcc-cHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCC----CCCCCC
Q 048309 63 EKARVSKEHEVLEIGCGW-GTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQL----PKAKKY 137 (288)
Q Consensus 63 ~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~----~~~~~f 137 (288)
..+...++.+||=.|||. |..+..+++..+.+++.++.+++..+.+++ .|.. .++...-.++ .....+
T Consensus 157 ~~~~~~~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~~~~~~~~~----~g~~---~~i~~~~~~~~~~~~~~~~~ 229 (333)
T cd08296 157 RNSGAKPGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGSDKADLARK----LGAH---HYIDTSKEDVAEALQELGGA 229 (333)
T ss_pred HhcCCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH----cCCc---EEecCCCccHHHHHHhcCCC
Confidence 345677888999999775 777788888778899999998887776643 2321 2221111111 111358
Q ss_pred CEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 138 DRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 138 D~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
|+++.... ....+....+.|+++|.++...
T Consensus 230 d~vi~~~g--------~~~~~~~~~~~l~~~G~~v~~g 259 (333)
T cd08296 230 KLILATAP--------NAKAISALVGGLAPRGKLLILG 259 (333)
T ss_pred CEEEECCC--------chHHHHHHHHHcccCCEEEEEe
Confidence 98885311 1234556678899999988743
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal |
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=90.86 E-value=0.42 Score=43.86 Aligned_cols=98 Identities=15% Similarity=0.223 Sum_probs=55.7
Q ss_pred CCCEEEEECCcc-cHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CCCCCCEEEEccch
Q 048309 69 KEHEVLEIGCGW-GTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAKKYDRIISCEMM 146 (288)
Q Consensus 69 ~~~~vLDiGcG~-G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~~fD~I~~~~~l 146 (288)
++.+|+=+|+|. |..+...++..+++|+.+|.+++..+.+.... + ..+.....+..++. .-..+|+|+..-.+
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~---g--~~v~~~~~~~~~l~~~l~~aDvVI~a~~~ 240 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEF---G--GRIHTRYSNAYEIEDAVKRADLLIGAVLI 240 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhc---C--ceeEeccCCHHHHHHHHccCCEEEEcccc
Confidence 456799999985 77777777766789999999987665544332 1 11221111112222 22478999975322
Q ss_pred hhhCHhhHHHHHHHHhcccccCcEEEE
Q 048309 147 EAVGHEYMEEYFGCCESLLAKDGLLVL 173 (288)
Q Consensus 147 ~~~~~~~~~~~l~~~~~~LkpgG~l~~ 173 (288)
... ..+.-+-++..+.++||++++-
T Consensus 241 ~g~--~~p~lit~~~l~~mk~g~vIvD 265 (370)
T TIGR00518 241 PGA--KAPKLVSNSLVAQMKPGAVIVD 265 (370)
T ss_pred CCC--CCCcCcCHHHHhcCCCCCEEEE
Confidence 111 1111122444466799987665
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >PLN02494 adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=90.82 E-value=1.3 Score=41.83 Aligned_cols=100 Identities=10% Similarity=0.046 Sum_probs=62.1
Q ss_pred HHHHHHHcCC-CCCCEEEEECCcc-cHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCC
Q 048309 58 HSLLIEKARV-SKEHEVLEIGCGW-GTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAK 135 (288)
Q Consensus 58 ~~~l~~~~~~-~~~~~vLDiGcG~-G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~ 135 (288)
++.+.+.-+. ..|++|+-+|+|+ |......++..+++|+++|.++.....+.. .|. .+. ++.+. -.
T Consensus 241 ~d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~----~G~----~vv--~leEa--l~ 308 (477)
T PLN02494 241 PDGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALM----EGY----QVL--TLEDV--VS 308 (477)
T ss_pred HHHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHh----cCC----eec--cHHHH--Hh
Confidence 4444544343 4688999999997 766666666678899999998865433322 232 221 22221 14
Q ss_pred CCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEee
Q 048309 136 KYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 136 ~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
..|+|++...-.+ -+..+..+.||+||.++....
T Consensus 309 ~ADVVI~tTGt~~-------vI~~e~L~~MK~GAiLiNvGr 342 (477)
T PLN02494 309 EADIFVTTTGNKD-------IIMVDHMRKMKNNAIVCNIGH 342 (477)
T ss_pred hCCEEEECCCCcc-------chHHHHHhcCCCCCEEEEcCC
Confidence 6899987432222 233556689999999887543
|
|
| >PLN02514 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=90.72 E-value=2.2 Score=38.66 Aligned_cols=95 Identities=22% Similarity=0.196 Sum_probs=57.8
Q ss_pred CCCCCEEEEECCcc-cHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEE-cccCCCC-CCCCCCEEEEc
Q 048309 67 VSKEHEVLEIGCGW-GTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYL-CDYRQLP-KAKKYDRIISC 143 (288)
Q Consensus 67 ~~~~~~vLDiGcG~-G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~-~d~~~~~-~~~~fD~I~~~ 143 (288)
..++.+|+-.|+|. |..+..+++..+.++++++.+++....+.+ ..|.. .++. .+...+. ....+|+++-.
T Consensus 178 ~~~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~---~~Ga~---~~i~~~~~~~~~~~~~~~D~vid~ 251 (357)
T PLN02514 178 KQSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEALE---HLGAD---DYLVSSDAAEMQEAADSLDYIIDT 251 (357)
T ss_pred CCCCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH---hcCCc---EEecCCChHHHHHhcCCCcEEEEC
Confidence 35788998888775 888888888877888888888765544432 23431 1111 1111111 12357888753
Q ss_pred cchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 144 EMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 144 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
-. ....+..+.+.|+++|+++...
T Consensus 252 ~g--------~~~~~~~~~~~l~~~G~iv~~G 275 (357)
T PLN02514 252 VP--------VFHPLEPYLSLLKLDGKLILMG 275 (357)
T ss_pred CC--------chHHHHHHHHHhccCCEEEEEC
Confidence 21 0234555668899999988754
|
|
| >PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2 | Back alignment and domain information |
|---|
Probab=90.57 E-value=0.71 Score=41.03 Aligned_cols=70 Identities=11% Similarity=0.155 Sum_probs=51.3
Q ss_pred EEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC---CCCCCCEEEEccchhh
Q 048309 72 EVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP---KAKKYDRIISCEMMEA 148 (288)
Q Consensus 72 ~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~---~~~~fD~I~~~~~l~~ 148 (288)
+++|+-||.|.+..-+.+.....+.++|+++.+.+.-+.++. ....+|+.++. .++.+|+++....+.-
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~--------~~~~~Di~~~~~~~l~~~~D~l~ggpPCQ~ 73 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP--------EVICGDITEIDPSDLPKDVDLLIGGPPCQG 73 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT--------EEEESHGGGCHHHHHHHT-SEEEEE---TT
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc--------ccccccccccccccccccceEEEeccCCce
Confidence 689999999999998877522368899999998888877762 78899999876 1126999998776654
Q ss_pred h
Q 048309 149 V 149 (288)
Q Consensus 149 ~ 149 (288)
+
T Consensus 74 f 74 (335)
T PF00145_consen 74 F 74 (335)
T ss_dssp T
T ss_pred E
Confidence 4
|
1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A .... |
| >PTZ00357 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=90.56 E-value=1.2 Score=43.74 Aligned_cols=97 Identities=19% Similarity=0.303 Sum_probs=61.3
Q ss_pred EEEEECCcccHHHHHHHHc-----cCCEEEEEcCCHHHHHHHHHHH-HHcCC-------CCceEEEEcccCCCCCC----
Q 048309 72 EVLEIGCGWGTFAIEVVRQ-----TGCNYTGITLSAEQMKYAEMKV-NEAGL-------QDHIRLYLCDYRQLPKA---- 134 (288)
Q Consensus 72 ~vLDiGcG~G~~~~~la~~-----~~~~v~giD~s~~~~~~a~~~~-~~~g~-------~~~v~~~~~d~~~~~~~---- 134 (288)
.|+-+|+|-|-+.....+. ...+|++||-++..+.....+. ....+ ..+|+++..|+..+..+
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~ 782 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG 782 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence 5889999999876554432 3458999999966544444432 22233 23599999999998521
Q ss_pred --------CCCCEEEE--ccchhhhCHhhHHHHHHHHhccccc----CcE
Q 048309 135 --------KKYDRIIS--CEMMEAVGHEYMEEYFGCCESLLAK----DGL 170 (288)
Q Consensus 135 --------~~fD~I~~--~~~l~~~~~~~~~~~l~~~~~~Lkp----gG~ 170 (288)
+++|+||+ .++|..= +--.+.|..+.+.||+ +|.
T Consensus 783 s~~~P~~~gKaDIVVSELLGSFGDN--ELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 783 SLTLPADFGLCDLIVSELLGSLGDN--ELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred cccccccccccceehHhhhcccccc--cCCHHHHHHHHHhhhhhcccccc
Confidence 37999998 3333221 2234555556666665 675
|
|
| >cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like | Back alignment and domain information |
|---|
Probab=90.43 E-value=0.97 Score=40.55 Aligned_cols=100 Identities=19% Similarity=0.260 Sum_probs=60.8
Q ss_pred HHcCCCCCCEEEEECCcc-cHHHHHHHHccC-CEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEccc----CCCCCCCC
Q 048309 63 EKARVSKEHEVLEIGCGW-GTFAIEVVRQTG-CNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDY----RQLPKAKK 136 (288)
Q Consensus 63 ~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~-~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~----~~~~~~~~ 136 (288)
......++.+||=.|+|. |..+..+++..+ .++++++.++...+.+++ .|...-+.....+. ..+.....
T Consensus 160 ~~~~~~~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~i~~~~~~~~ 235 (345)
T cd08286 160 LNGKVKPGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKK----LGATHTVNSAKGDAIEQVLELTDGRG 235 (345)
T ss_pred hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCCCceeccccccHHHHHHHHhCCCC
Confidence 334566788888788764 667777777766 789999988877666553 23311112111121 11123356
Q ss_pred CCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 137 YDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 137 fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
+|+++..- + . ...+..+.+.|+++|+++..
T Consensus 236 ~d~vld~~-----g--~-~~~~~~~~~~l~~~g~~v~~ 265 (345)
T cd08286 236 VDVVIEAV-----G--I-PATFELCQELVAPGGHIANV 265 (345)
T ss_pred CCEEEECC-----C--C-HHHHHHHHHhccCCcEEEEe
Confidence 99998542 1 1 22466677899999998864
|
This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers ( |
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=89.99 E-value=2.2 Score=38.30 Aligned_cols=99 Identities=14% Similarity=0.122 Sum_probs=61.0
Q ss_pred CEEEEECCcc--cHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHH-------HcCCC-----CceEEEEcccCCCCCCCC
Q 048309 71 HEVLEIGCGW--GTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVN-------EAGLQ-----DHIRLYLCDYRQLPKAKK 136 (288)
Q Consensus 71 ~~vLDiGcG~--G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~-------~~g~~-----~~v~~~~~d~~~~~~~~~ 136 (288)
.+|.=||+|+ ..++..++. .|.+|+..|.+++.++.++..++ +.++. .++++. .|+.+ .-..
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~-aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~-~~l~~--av~~ 83 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALA-HGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFV-ATIEA--CVAD 83 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceec-CCHHH--HhcC
Confidence 5788899995 345555565 48999999999998877665443 12221 112211 11111 1256
Q ss_pred CCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEee
Q 048309 137 YDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 137 fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
.|+|+-. +.+-+ +-...+++++-+.++|+..+..++.
T Consensus 84 aDlViEa-vpE~l--~vK~~lf~~l~~~~~~~aIlaSnTS 120 (321)
T PRK07066 84 ADFIQES-APERE--ALKLELHERISRAAKPDAIIASSTS 120 (321)
T ss_pred CCEEEEC-CcCCH--HHHHHHHHHHHHhCCCCeEEEECCC
Confidence 7888764 33443 5567889999999999885444333
|
|
| >cd05281 TDH Threonine dehydrogenase | Back alignment and domain information |
|---|
Probab=89.99 E-value=1.1 Score=40.24 Aligned_cols=96 Identities=18% Similarity=0.178 Sum_probs=57.7
Q ss_pred CCCCCEEEEECCcc-cHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEccc---CCCCCCCCCCEEE
Q 048309 67 VSKEHEVLEIGCGW-GTFAIEVVRQTGC-NYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDY---RQLPKAKKYDRII 141 (288)
Q Consensus 67 ~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~---~~~~~~~~fD~I~ 141 (288)
..++.+||-.|+|. |..+..+++..+. .|++++-+++....+++ .|...-+.....+. .+....+.+|+++
T Consensus 161 ~~~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~vd~vl 236 (341)
T cd05281 161 DVSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKK----MGADVVINPREEDVVEVKSVTDGTGVDVVL 236 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----hCcceeeCcccccHHHHHHHcCCCCCCEEE
Confidence 35778888788765 7788888887676 68888877766655543 23210011111111 1122345799998
Q ss_pred EccchhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 142 SCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 142 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
..-. -......+.+.|+++|.++..
T Consensus 237 d~~g--------~~~~~~~~~~~l~~~G~~v~~ 261 (341)
T cd05281 237 EMSG--------NPKAIEQGLKALTPGGRVSIL 261 (341)
T ss_pred ECCC--------CHHHHHHHHHHhccCCEEEEE
Confidence 6421 023355566889999998864
|
L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. |
| >PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B | Back alignment and domain information |
|---|
Probab=89.97 E-value=1.1 Score=35.26 Aligned_cols=112 Identities=14% Similarity=-0.032 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCC
Q 048309 53 AQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQL 131 (288)
Q Consensus 53 a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~ 131 (288)
+|+..++++++.....+| -|||+|=|.|..--++.+. ++.+|+.+|-.-..-. ...|+.-.++.+|+.+.
T Consensus 13 aQR~~L~~a~~~v~~~~G-~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l~~hp--------~~~P~~~~~ilGdi~~t 83 (160)
T PF12692_consen 13 AQRDCLNWAAAQVAGLPG-PVLELGLGNGRTYDHLREIFPDRRIYVFDRALACHP--------SSTPPEEDLILGDIRET 83 (160)
T ss_dssp HHHHHHHHHHHHTTT--S--EEEE--TTSHHHHHHHHH--SS-EEEEESS--S-G--------GG---GGGEEES-HHHH
T ss_pred HHHHHHHHHHHHhcCCCC-ceEEeccCCCccHHHHHHhCCCCeEEEEeeecccCC--------CCCCchHheeeccHHHH
Confidence 788888888888876665 7999999999999999887 8889999995332211 11223446788887653
Q ss_pred C-----CCCCCCEEEEccchhhhCH--hhHHHHHHHHhcccccCcEEEE
Q 048309 132 P-----KAKKYDRIISCEMMEAVGH--EYMEEYFGCCESLLAKDGLLVL 173 (288)
Q Consensus 132 ~-----~~~~fD~I~~~~~l~~~~~--~~~~~~l~~~~~~LkpgG~l~~ 173 (288)
. ...+.-++.+....+.-.. ....-+-.-+..+|.|||.++.
T Consensus 84 l~~~~~~g~~a~laHaD~G~g~~~~d~a~a~~lspli~~~la~gGi~vS 132 (160)
T PF12692_consen 84 LPALARFGAGAALAHADIGTGDKEKDDATAAWLSPLIAPVLAPGGIMVS 132 (160)
T ss_dssp HHHHHHH-S-EEEEEE----S-HHHHHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred hHHHHhcCCceEEEEeecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEe
Confidence 2 1233334444332222100 0111122345688999998876
|
|
| >KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=89.89 E-value=0.91 Score=38.23 Aligned_cols=73 Identities=16% Similarity=0.142 Sum_probs=55.6
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCC
Q 048309 57 KHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQL 131 (288)
Q Consensus 57 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~ 131 (288)
..+.+++.++.-...-|.+||.|.|+.+..+......+...++.++..+.-.+-..+.+. .+..+..+|+..+
T Consensus 38 lT~KIvK~A~~~~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~EAa~--~~~~IHh~D~LR~ 110 (326)
T KOG0821|consen 38 LTDKIVKKAGNLTNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSEAAP--GKLRIHHGDVLRF 110 (326)
T ss_pred HHHHHHHhccccccceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhhcCC--cceEEecccccee
Confidence 345677777766778999999999999999987644578888888888777766666443 4788888888653
|
|
| >PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures [] | Back alignment and domain information |
|---|
Probab=89.83 E-value=1.5 Score=38.18 Aligned_cols=75 Identities=15% Similarity=0.198 Sum_probs=48.8
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHcc------CCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCC
Q 048309 57 KHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQT------GCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQ 130 (288)
Q Consensus 57 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~------~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~ 130 (288)
.+.++.+.--+.+...++|+|||.|.++..++... ...++.||-...-. .+...+........++=+..|+.+
T Consensus 6 li~~l~~~~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~-K~D~~~~~~~~~~~~~R~riDI~d 84 (259)
T PF05206_consen 6 LIGNLEQRGLLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRH-KADNKIRKDESEPKFERLRIDIKD 84 (259)
T ss_pred HHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccc-cchhhhhccCCCCceEEEEEEeec
Confidence 34444444445677899999999999999998762 35799999755433 233333333311256777788877
Q ss_pred CC
Q 048309 131 LP 132 (288)
Q Consensus 131 ~~ 132 (288)
+.
T Consensus 85 l~ 86 (259)
T PF05206_consen 85 LD 86 (259)
T ss_pred cc
Confidence 65
|
The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing |
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=89.66 E-value=2.6 Score=37.20 Aligned_cols=101 Identities=19% Similarity=0.260 Sum_probs=63.7
Q ss_pred CEEEEECCcc--cHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHH-------cCCC---------CceEEEEcccCCCC
Q 048309 71 HEVLEIGCGW--GTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNE-------AGLQ---------DHIRLYLCDYRQLP 132 (288)
Q Consensus 71 ~~vLDiGcG~--G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~-------~g~~---------~~v~~~~~d~~~~~ 132 (288)
.+|-=||+|+ +.++..++.. |.+|+..|.+++.++.+++++++ .|.- .+++ ...|...
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~-G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~-~~~~~~~-- 81 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARA-GVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLR-FTTDLGD-- 81 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeE-eeCCHHH--
Confidence 4788899996 3455555654 89999999999999887766432 1210 1111 1223322
Q ss_pred CCCCCCEEEEccchhhhCHhhHHHHHHHHhccc-ccCcEEEEEeecCC
Q 048309 133 KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLL-AKDGLLVLQFSSTP 179 (288)
Q Consensus 133 ~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~L-kpgG~l~~~~~~~~ 179 (288)
-...|+|+-. +.+.. +....++..+-..+ +|+..+...+.+.+
T Consensus 82 -~~~~d~ViEa-v~E~~--~~K~~l~~~l~~~~~~~~~il~snTS~~~ 125 (286)
T PRK07819 82 -FADRQLVIEA-VVEDE--AVKTEIFAELDKVVTDPDAVLASNTSSIP 125 (286)
T ss_pred -hCCCCEEEEe-cccCH--HHHHHHHHHHHHhhCCCCcEEEECCCCCC
Confidence 2567888764 34444 55677888888888 77776666554433
|
|
| >PLN02178 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=89.45 E-value=1.9 Score=39.57 Aligned_cols=93 Identities=23% Similarity=0.191 Sum_probs=57.2
Q ss_pred CCCCEEEEECCcc-cHHHHHHHHccCCEEEEEcCCHHH-HHHHHHHHHHcCCCCceEEEE-cccCCCC-CCCCCCEEEEc
Q 048309 68 SKEHEVLEIGCGW-GTFAIEVVRQTGCNYTGITLSAEQ-MKYAEMKVNEAGLQDHIRLYL-CDYRQLP-KAKKYDRIISC 143 (288)
Q Consensus 68 ~~~~~vLDiGcG~-G~~~~~la~~~~~~v~giD~s~~~-~~~a~~~~~~~g~~~~v~~~~-~d~~~~~-~~~~fD~I~~~ 143 (288)
+++.+|+-.|+|. |..+..+|+..+.+|++++.+++. .+.+ ++.|.. .++. .+...+. ..+.+|+++-.
T Consensus 177 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a----~~lGa~---~~i~~~~~~~v~~~~~~~D~vid~ 249 (375)
T PLN02178 177 ESGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAI----DRLGAD---SFLVTTDSQKMKEAVGTMDFIIDT 249 (375)
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCChHHhHHHH----HhCCCc---EEEcCcCHHHHHHhhCCCcEEEEC
Confidence 4788999899875 888888888878889999877653 3333 233431 1221 1111111 11358888864
Q ss_pred cchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 144 EMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 144 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
-. ....+..+.+.+++||+++...
T Consensus 250 ~G--------~~~~~~~~~~~l~~~G~iv~vG 273 (375)
T PLN02178 250 VS--------AEHALLPLFSLLKVSGKLVALG 273 (375)
T ss_pred CC--------cHHHHHHHHHhhcCCCEEEEEc
Confidence 21 1234566678899999998754
|
|
| >cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=89.43 E-value=2.3 Score=38.72 Aligned_cols=101 Identities=13% Similarity=0.107 Sum_probs=61.8
Q ss_pred HHHcCCCCCCEEEEECCcc-cHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEc--cc----CCCCC
Q 048309 62 IEKARVSKEHEVLEIGCGW-GTFAIEVVRQTGC-NYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLC--DY----RQLPK 133 (288)
Q Consensus 62 ~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~--d~----~~~~~ 133 (288)
.......++.+||=.|+|. |..+..+++..+. .+++++.+++..+.+++. |...-+..... +. .++ .
T Consensus 176 ~~~~~~~~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~~~~----g~~~~v~~~~~~~~~~~~l~~~-~ 250 (365)
T cd05279 176 VNTAKVTPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQL----GATECINPRDQDKPIVEVLTEM-T 250 (365)
T ss_pred HhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHh----CCCeecccccccchHHHHHHHH-h
Confidence 3445677889999888875 7777778877666 488899888877776432 33111111111 11 111 1
Q ss_pred CCCCCEEEEccchhhhCHhhHHHHHHHHhcccc-cCcEEEEEe
Q 048309 134 AKKYDRIISCEMMEAVGHEYMEEYFGCCESLLA-KDGLLVLQF 175 (288)
Q Consensus 134 ~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~ 175 (288)
.+.+|+++.... -...+....+.|+ ++|+++...
T Consensus 251 ~~~~d~vid~~g--------~~~~~~~~~~~l~~~~G~~v~~g 285 (365)
T cd05279 251 DGGVDYAFEVIG--------SADTLKQALDATRLGGGTSVVVG 285 (365)
T ss_pred CCCCcEEEECCC--------CHHHHHHHHHHhccCCCEEEEEe
Confidence 356898885321 0234556678888 999988753
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall |
| >KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=89.20 E-value=1.6 Score=40.86 Aligned_cols=109 Identities=17% Similarity=0.214 Sum_probs=68.0
Q ss_pred CCCEEEEECCcccH--HHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcc--cC--CCC--CCCCCCE
Q 048309 69 KEHEVLEIGCGWGT--FAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCD--YR--QLP--KAKKYDR 139 (288)
Q Consensus 69 ~~~~vLDiGcG~G~--~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d--~~--~~~--~~~~fD~ 139 (288)
.+..+.|+|+|.|. ++...... ....++.||.+..|.+......+...- +-....-. +. .++ ....||+
T Consensus 200 ~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~--~g~~~v~~~~~~r~~~pi~~~~~yDl 277 (491)
T KOG2539|consen 200 RPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSH--IGEPIVRKLVFHRQRLPIDIKNGYDL 277 (491)
T ss_pred ChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhh--cCchhccccchhcccCCCCcccceee
Confidence 34578899988654 33333333 345799999999999988877765110 11111111 11 123 4456999
Q ss_pred EEEccchhhhCHh-hHHH-HHHHHhcccccCcEEEEEeecCC
Q 048309 140 IISCEMMEAVGHE-YMEE-YFGCCESLLAKDGLLVLQFSSTP 179 (288)
Q Consensus 140 I~~~~~l~~~~~~-~~~~-~l~~~~~~LkpgG~l~~~~~~~~ 179 (288)
|++.+.+++++.. .... .-.-+....++|+.+++...+.+
T Consensus 278 vi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~~ 319 (491)
T KOG2539|consen 278 VICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGTT 319 (491)
T ss_pred EEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCCc
Confidence 9999999998432 2223 33445677789999998765544
|
|
| >COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=88.91 E-value=1.3 Score=39.03 Aligned_cols=47 Identities=15% Similarity=0.277 Sum_probs=39.5
Q ss_pred CCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHH
Q 048309 67 VSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNE 114 (288)
Q Consensus 67 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~ 114 (288)
+..|.+|+-||+|......++++. ..+|.+||+++..+...+-+++.
T Consensus 61 ~g~ghrivtigSGGcn~L~ylsr~-Pa~id~VDlN~ahiAln~lklaA 107 (414)
T COG5379 61 LGIGHRIVTIGSGGCNMLAYLSRA-PARIDVVDLNPAHIALNRLKLAA 107 (414)
T ss_pred cCCCcEEEEecCCcchHHHHhhcC-CceeEEEeCCHHHHHHHHHHHHH
Confidence 457889999999999888888876 56999999999999877766543
|
|
| >cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=88.89 E-value=1.4 Score=40.11 Aligned_cols=94 Identities=18% Similarity=0.243 Sum_probs=59.2
Q ss_pred CCCCCCEEEEECCc-ccHHHHHHHHccCCE-EEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCC-------CCCCCC
Q 048309 66 RVSKEHEVLEIGCG-WGTFAIEVVRQTGCN-YTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQ-------LPKAKK 136 (288)
Q Consensus 66 ~~~~~~~vLDiGcG-~G~~~~~la~~~~~~-v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~-------~~~~~~ 136 (288)
...++.+||-.|+| .|..+..+++..+.+ +++++.+++..+.+++ .+.. .++..+-.+ ......
T Consensus 184 ~~~~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~~~----~g~~---~v~~~~~~~~~~~l~~~~~~~~ 256 (367)
T cd08263 184 DVRPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKE----LGAT---HTVNAAKEDAVAAIREITGGRG 256 (367)
T ss_pred cCCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----hCCc---eEecCCcccHHHHHHHHhCCCC
Confidence 34678888877876 477777788776666 9999988887766643 2321 222221111 113456
Q ss_pred CCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 137 YDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 137 fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
+|+|+..-. . ...+..+.+.|+++|+++..
T Consensus 257 ~d~vld~vg-------~-~~~~~~~~~~l~~~G~~v~~ 286 (367)
T cd08263 257 VDVVVEALG-------K-PETFKLALDVVRDGGRAVVV 286 (367)
T ss_pred CCEEEEeCC-------C-HHHHHHHHHHHhcCCEEEEE
Confidence 999986411 0 12456667899999998864
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu |
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=88.86 E-value=4.2 Score=35.76 Aligned_cols=97 Identities=19% Similarity=0.275 Sum_probs=58.0
Q ss_pred CEEEEECCcc-cH-HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHc--------CCC---------CceEEEEcccCCC
Q 048309 71 HEVLEIGCGW-GT-FAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEA--------GLQ---------DHIRLYLCDYRQL 131 (288)
Q Consensus 71 ~~vLDiGcG~-G~-~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~--------g~~---------~~v~~~~~d~~~~ 131 (288)
.+|.=||+|. |. ++..++. .+.+|+.+|.+++.++.+++.++.. .+. .++++ ..|..+
T Consensus 4 ~kIaViGaG~mG~~iA~~la~-~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~d~~~- 80 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAF-HGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITL-TTDLAE- 80 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEE-eCCHHH-
Confidence 3677899996 33 3444454 4789999999999888877653211 110 12221 222222
Q ss_pred CCCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 132 PKAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 132 ~~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
.-...|+|+..-. +.. +....+++++...++++-.+...
T Consensus 81 -a~~~aDlVieavp-e~~--~~k~~~~~~l~~~~~~~~ii~sn 119 (287)
T PRK08293 81 -AVKDADLVIEAVP-EDP--EIKGDFYEELAKVAPEKTIFATN 119 (287)
T ss_pred -HhcCCCEEEEecc-CCH--HHHHHHHHHHHhhCCCCCEEEEC
Confidence 1256788886532 222 34577888888888777755443
|
|
| >cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=88.83 E-value=4.3 Score=36.31 Aligned_cols=98 Identities=22% Similarity=0.214 Sum_probs=60.2
Q ss_pred HHcCCCCCCEEEEECCcc-cHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCC-C-CCCCCCE
Q 048309 63 EKARVSKEHEVLEIGCGW-GTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQL-P-KAKKYDR 139 (288)
Q Consensus 63 ~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~-~-~~~~fD~ 139 (288)
..+...++.+|+=.|||. |..+..+++..+.++++++.+++..+.+++ .|.. .++...-.+. . ..+.+|+
T Consensus 163 ~~~~~~~g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~----~g~~---~vi~~~~~~~~~~~~~~~d~ 235 (337)
T cd05283 163 KRNGVGPGKRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSPSKKEDALK----LGAD---EFIATKDPEAMKKAAGSLDL 235 (337)
T ss_pred HhcCCCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH----cCCc---EEecCcchhhhhhccCCceE
Confidence 344567788888788764 777777777777899999998887776643 2321 1121111111 1 2356888
Q ss_pred EEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 140 IISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 140 I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
++....- ...+..+.+.|+++|.++...
T Consensus 236 v~~~~g~--------~~~~~~~~~~l~~~G~~v~~g 263 (337)
T cd05283 236 IIDTVSA--------SHDLDPYLSLLKPGGTLVLVG 263 (337)
T ss_pred EEECCCC--------cchHHHHHHHhcCCCEEEEEe
Confidence 8853211 123455568889999988743
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic |
| >cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=88.80 E-value=7.1 Score=35.72 Aligned_cols=99 Identities=17% Similarity=0.110 Sum_probs=60.4
Q ss_pred cCCCCCCEEEEECCcc-cHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEc---cc----CCCCCCC
Q 048309 65 ARVSKEHEVLEIGCGW-GTFAIEVVRQTGC-NYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLC---DY----RQLPKAK 135 (288)
Q Consensus 65 ~~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~---d~----~~~~~~~ 135 (288)
...+++.+||=.|+|. |..+..+++..+. .|++++.+++..+.+++ .|...-+..... +. ..+....
T Consensus 199 ~~~~~g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~~~~v~~~~~g~ 274 (384)
T cd08265 199 GGFRPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRNLAKE----MGADYVFNPTKMRDCLSGEKVMEVTKGW 274 (384)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCCCEEEcccccccccHHHHHHHhcCCC
Confidence 3567888988888875 7777777877677 79999988875554443 343210111110 11 1122335
Q ss_pred CCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 136 KYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 136 ~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
.+|+|+.... .....+..+.+.|+++|+++..
T Consensus 275 gvDvvld~~g-------~~~~~~~~~~~~l~~~G~~v~~ 306 (384)
T cd08265 275 GADIQVEAAG-------APPATIPQMEKSIAINGKIVYI 306 (384)
T ss_pred CCCEEEECCC-------CcHHHHHHHHHHHHcCCEEEEE
Confidence 6999986421 1123456667888999999874
|
This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi |
| >cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like | Back alignment and domain information |
|---|
Probab=88.79 E-value=1.4 Score=39.48 Aligned_cols=97 Identities=16% Similarity=0.190 Sum_probs=60.3
Q ss_pred HcCCCCCCEEEEECCcc-cHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcc-------cCCCCCC
Q 048309 64 KARVSKEHEVLEIGCGW-GTFAIEVVRQTGC-NYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCD-------YRQLPKA 134 (288)
Q Consensus 64 ~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d-------~~~~~~~ 134 (288)
.....++.+|+=.|||. |..+..+++..+. .+++++.++...+.+++ .|.. .++... +......
T Consensus 163 ~~~~~~g~~vlI~g~g~vg~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~ga~---~v~~~~~~~~~~~i~~~~~~ 235 (345)
T cd08287 163 SAGVRPGSTVVVVGDGAVGLCAVLAAKRLGAERIIAMSRHEDRQALARE----FGAT---DIVAERGEEAVARVRELTGG 235 (345)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----cCCc---eEecCCcccHHHHHHHhcCC
Confidence 45667788888788875 7778888887666 48999988765554443 3331 122111 1111233
Q ss_pred CCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 135 KKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 135 ~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
..+|+++.... -...+..+.+.|+++|.++...
T Consensus 236 ~~~d~il~~~g--------~~~~~~~~~~~l~~~g~~v~~g 268 (345)
T cd08287 236 VGADAVLECVG--------TQESMEQAIAIARPGGRVGYVG 268 (345)
T ss_pred CCCCEEEECCC--------CHHHHHHHHHhhccCCEEEEec
Confidence 46898885421 1345667778899999988743
|
This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >PRK10083 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=88.78 E-value=2.6 Score=37.60 Aligned_cols=103 Identities=17% Similarity=0.101 Sum_probs=60.2
Q ss_pred HHHHcCCCCCCEEEEECCcc-cHHHHHHHHc-cCC-EEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCC-CC-CCC
Q 048309 61 LIEKARVSKEHEVLEIGCGW-GTFAIEVVRQ-TGC-NYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQ-LP-KAK 135 (288)
Q Consensus 61 l~~~~~~~~~~~vLDiGcG~-G~~~~~la~~-~~~-~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~-~~-~~~ 135 (288)
+.......++.+||=.|+|. |..+..+++. .+. .++++|.+++..+.+++. |...-+.....+... +. ...
T Consensus 152 ~~~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~----Ga~~~i~~~~~~~~~~~~~~g~ 227 (339)
T PRK10083 152 VTGRTGPTEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKES----GADWVINNAQEPLGEALEEKGI 227 (339)
T ss_pred HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHh----CCcEEecCccccHHHHHhcCCC
Confidence 34455677889999999775 7777777774 365 588899888877766543 331001111111111 11 112
Q ss_pred CCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 136 KYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 136 ~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
.+|+++.... -...+....+.|+++|+++...
T Consensus 228 ~~d~vid~~g--------~~~~~~~~~~~l~~~G~~v~~g 259 (339)
T PRK10083 228 KPTLIIDAAC--------HPSILEEAVTLASPAARIVLMG 259 (339)
T ss_pred CCCEEEECCC--------CHHHHHHHHHHhhcCCEEEEEc
Confidence 3557664321 0234566678999999998743
|
|
| >cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase | Back alignment and domain information |
|---|
Probab=88.66 E-value=1.3 Score=39.67 Aligned_cols=98 Identities=19% Similarity=0.220 Sum_probs=62.1
Q ss_pred HHcCCCCCCEEEEECCc-ccHHHHHHHHccCCE-EEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccC-------CCCC
Q 048309 63 EKARVSKEHEVLEIGCG-WGTFAIEVVRQTGCN-YTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYR-------QLPK 133 (288)
Q Consensus 63 ~~~~~~~~~~vLDiGcG-~G~~~~~la~~~~~~-v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~-------~~~~ 133 (288)
..+.+.++.+||=.|+| .|..+..+++..+.+ +++++.+++..+.+++ .+.. .++..+-. ....
T Consensus 159 ~~~~~~~g~~VlV~g~g~vg~~~~~la~~~g~~~v~~~~~s~~~~~~~~~----~g~~---~~~~~~~~~~~~~i~~~~~ 231 (343)
T cd08235 159 RKAGIKPGDTVLVIGAGPIGLLHAMLAKASGARKVIVSDLNEFRLEFAKK----LGAD---YTIDAAEEDLVEKVRELTD 231 (343)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----hCCc---EEecCCccCHHHHHHHHhC
Confidence 44567788899888876 477777888877777 8899888887776643 2321 22222111 1123
Q ss_pred CCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 134 AKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 134 ~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
...+|+|+....- ...+..+.+.|+++|+++...
T Consensus 232 ~~~vd~vld~~~~--------~~~~~~~~~~l~~~g~~v~~~ 265 (343)
T cd08235 232 GRGADVVIVATGS--------PEAQAQALELVRKGGRILFFG 265 (343)
T ss_pred CcCCCEEEECCCC--------hHHHHHHHHHhhcCCEEEEEe
Confidence 3458999864221 234555668889999988643
|
Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i |
| >TIGR00675 dcm DNA-methyltransferase (dcm) | Back alignment and domain information |
|---|
Probab=88.59 E-value=0.97 Score=40.50 Aligned_cols=69 Identities=10% Similarity=0.181 Sum_probs=50.1
Q ss_pred EEEECCcccHHHHHHHHccCCE-EEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC--CCCCCCEEEEccchhhh
Q 048309 73 VLEIGCGWGTFAIEVVRQTGCN-YTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP--KAKKYDRIISCEMMEAV 149 (288)
Q Consensus 73 vLDiGcG~G~~~~~la~~~~~~-v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~--~~~~fD~I~~~~~l~~~ 149 (288)
|+|+-||.|.++.-+.+. |.+ +.++|+++.+++.-+.++. . .++.+|+.++. .-..+|+++....+..+
T Consensus 1 vidLF~G~GG~~~Gl~~a-G~~~~~a~e~~~~a~~ty~~N~~------~-~~~~~Di~~~~~~~~~~~dvl~gg~PCq~f 72 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQA-GFKCVFASEIDKYAQKTYEANFG------N-KVPFGDITKISPSDIPDFDILLGGFPCQPF 72 (315)
T ss_pred CEEEecCccHHHHHHHHc-CCeEEEEEeCCHHHHHHHHHhCC------C-CCCccChhhhhhhhCCCcCEEEecCCCccc
Confidence 589999999999888764 566 4579999998887776652 2 44567887765 22468999887655444
|
All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >COG1255 Uncharacterized protein conserved in archaea [Function unknown] | Back alignment and domain information |
|---|
Probab=88.46 E-value=3.6 Score=30.96 Aligned_cols=88 Identities=14% Similarity=0.148 Sum_probs=58.7
Q ss_pred CCEEEEECCccc-HHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC--CCCCCCEEEEccch
Q 048309 70 EHEVLEIGCGWG-TFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP--KAKKYDRIISCEMM 146 (288)
Q Consensus 70 ~~~vLDiGcG~G-~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~--~~~~fD~I~~~~~l 146 (288)
..+|+|+|-|-= ..+..|+++ |+.++++|+.+. +. + ..++++..|+.+.. .-...|+|.|.-
T Consensus 14 ~gkVvEVGiG~~~~VA~~L~e~-g~dv~atDI~~~-------~a---~--~g~~~v~DDitnP~~~iY~~A~lIYSiR-- 78 (129)
T COG1255 14 RGKVVEVGIGFFLDVAKRLAER-GFDVLATDINEK-------TA---P--EGLRFVVDDITNPNISIYEGADLIYSIR-- 78 (129)
T ss_pred CCcEEEEccchHHHHHHHHHHc-CCcEEEEecccc-------cC---c--ccceEEEccCCCccHHHhhCccceeecC--
Confidence 349999999974 456666665 899999999886 11 1 24789999998865 346789998852
Q ss_pred hhhCHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 147 EAVGHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 147 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
+++++...+-++.+.+ |..+++...+
T Consensus 79 ---pppEl~~~ildva~aV--ga~l~I~pL~ 104 (129)
T COG1255 79 ---PPPELQSAILDVAKAV--GAPLYIKPLT 104 (129)
T ss_pred ---CCHHHHHHHHHHHHhh--CCCEEEEecC
Confidence 2245555555555544 4555665444
|
|
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=88.09 E-value=5.7 Score=35.23 Aligned_cols=87 Identities=20% Similarity=0.211 Sum_probs=53.7
Q ss_pred CCCEEEEECCcc-cHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CCCCCCEEEEccch
Q 048309 69 KEHEVLEIGCGW-GTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAKKYDRIISCEMM 146 (288)
Q Consensus 69 ~~~~vLDiGcG~-G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~~fD~I~~~~~l 146 (288)
.+.+|+=+|+|. |..+...++..+++|+.+|.++...+.++ ..|. ++. +..++. .-..+|+|+..-..
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~----~~G~----~~~--~~~~l~~~l~~aDiVI~t~p~ 220 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARIT----EMGL----SPF--HLSELAEEVGKIDIIFNTIPA 220 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH----HcCC----eee--cHHHHHHHhCCCCEEEECCCh
Confidence 578999999986 55555555556889999999987655443 2332 222 112222 22579999985321
Q ss_pred hhhCHhhHHHHHHHHhcccccCcEEEE
Q 048309 147 EAVGHEYMEEYFGCCESLLAKDGLLVL 173 (288)
Q Consensus 147 ~~~~~~~~~~~l~~~~~~LkpgG~l~~ 173 (288)
. -+-++..+.++||++++-
T Consensus 221 ~--------~i~~~~l~~~~~g~vIID 239 (296)
T PRK08306 221 L--------VLTKEVLSKMPPEALIID 239 (296)
T ss_pred h--------hhhHHHHHcCCCCcEEEE
Confidence 1 122445577889886653
|
|
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=88.06 E-value=4.4 Score=35.62 Aligned_cols=99 Identities=18% Similarity=0.287 Sum_probs=58.7
Q ss_pred EEEEECCcc-c-HHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHH-------cC-CC--------CceEEEEcccCCCCC
Q 048309 72 EVLEIGCGW-G-TFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNE-------AG-LQ--------DHIRLYLCDYRQLPK 133 (288)
Q Consensus 72 ~vLDiGcG~-G-~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~-------~g-~~--------~~v~~~~~d~~~~~~ 133 (288)
+|.=||+|. | .++..+++. +.+|+.+|.+++.++.+.+.... .+ +. .++++ ..|..+ .
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~--~ 78 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVS-GFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSY-SLDLKA--A 78 (288)
T ss_pred EEEEECccHHHHHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCcHHH--h
Confidence 577789985 3 344555554 78999999999999887654321 11 00 01221 122221 2
Q ss_pred CCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 134 AKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 134 ~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
-...|+|+..-. +.. +....++.++.+.++|+..+...+.+
T Consensus 79 ~~~aD~Vi~avp-e~~--~~k~~~~~~l~~~~~~~~il~~~tSt 119 (288)
T PRK09260 79 VADADLVIEAVP-EKL--ELKKAVFETADAHAPAECYIATNTST 119 (288)
T ss_pred hcCCCEEEEecc-CCH--HHHHHHHHHHHhhCCCCcEEEEcCCC
Confidence 256898886432 222 33567788888888888766554444
|
|
| >cd08241 QOR1 Quinone oxidoreductase (QOR) | Back alignment and domain information |
|---|
Probab=88.05 E-value=2.1 Score=37.33 Aligned_cols=96 Identities=21% Similarity=0.235 Sum_probs=60.1
Q ss_pred HcCCCCCCEEEEECC--cccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCC-------CCCC
Q 048309 64 KARVSKEHEVLEIGC--GWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQ-------LPKA 134 (288)
Q Consensus 64 ~~~~~~~~~vLDiGc--G~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~-------~~~~ 134 (288)
.....++..|+-.|| +.|..+..+++..++.+++++.++...+.+++ .|.. .++..+-.+ ....
T Consensus 134 ~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~i~~~~~~ 206 (323)
T cd08241 134 RARLQPGETVLVLGAAGGVGLAAVQLAKALGARVIAAASSEEKLALARA----LGAD---HVIDYRDPDLRERVKALTGG 206 (323)
T ss_pred hcCCCCCCEEEEEcCCchHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHH----cCCc---eeeecCCccHHHHHHHHcCC
Confidence 345667889999998 35777777777778899999998887766643 2321 112111111 1123
Q ss_pred CCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 135 KKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 135 ~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
..+|.++....- ..+..+.+.++++|.++...
T Consensus 207 ~~~d~v~~~~g~---------~~~~~~~~~~~~~g~~v~~~ 238 (323)
T cd08241 207 RGVDVVYDPVGG---------DVFEASLRSLAWGGRLLVIG 238 (323)
T ss_pred CCcEEEEECccH---------HHHHHHHHhhccCCEEEEEc
Confidence 468888764221 23445567889999988643
|
QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic |
| >COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=87.98 E-value=3.8 Score=36.08 Aligned_cols=88 Identities=23% Similarity=0.163 Sum_probs=53.5
Q ss_pred CEEEEECCcc--cHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCEEEEccchh
Q 048309 71 HEVLEIGCGW--GTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMME 147 (288)
Q Consensus 71 ~~vLDiGcG~--G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~~~~~l~ 147 (288)
.+|+-+|.|- |.++..+.+. ....++|.|.+....+.+.+. |+. .-...+. ........|+|+..-.+.
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~l----gv~---d~~~~~~-~~~~~~~aD~VivavPi~ 75 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALEL----GVI---DELTVAG-LAEAAAEADLVIVAVPIE 75 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhc----Ccc---cccccch-hhhhcccCCEEEEeccHH
Confidence 5788899885 4555666554 444578999988777666432 221 1111111 011335789998865555
Q ss_pred hhCHhhHHHHHHHHhcccccCcEE
Q 048309 148 AVGHEYMEEYFGCCESLLAKDGLL 171 (288)
Q Consensus 148 ~~~~~~~~~~l~~~~~~LkpgG~l 171 (288)
.. .++++++...|++|..+
T Consensus 76 ~~-----~~~l~~l~~~l~~g~iv 94 (279)
T COG0287 76 AT-----EEVLKELAPHLKKGAIV 94 (279)
T ss_pred HH-----HHHHHHhcccCCCCCEE
Confidence 44 77888888888877643
|
|
| >TIGR00692 tdh L-threonine 3-dehydrogenase | Back alignment and domain information |
|---|
Probab=87.94 E-value=1.2 Score=39.85 Aligned_cols=97 Identities=16% Similarity=0.147 Sum_probs=57.8
Q ss_pred CCCCCEEEEECCc-ccHHHHHHHHccCCE-EEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccC----CCCCCCCCCEE
Q 048309 67 VSKEHEVLEIGCG-WGTFAIEVVRQTGCN-YTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYR----QLPKAKKYDRI 140 (288)
Q Consensus 67 ~~~~~~vLDiGcG-~G~~~~~la~~~~~~-v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~----~~~~~~~fD~I 140 (288)
..++.+|+-.|+| .|..+..+++..+.+ |++++.++...+.+++. |...-+.....+.. .+.....+|++
T Consensus 159 ~~~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~~~~~~~~~~~~----g~~~~v~~~~~~~~~~l~~~~~~~~~d~v 234 (340)
T TIGR00692 159 PISGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLELAKKM----GATYVVNPFKEDVVKEVADLTDGEGVDVF 234 (340)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh----CCcEEEcccccCHHHHHHHhcCCCCCCEE
Confidence 4577888877776 377777788776775 88888877666655432 32100111111111 11233569999
Q ss_pred EEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 141 ISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 141 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
+.... . ...+..+.+.|+++|.++...
T Consensus 235 ld~~g----~----~~~~~~~~~~l~~~g~~v~~g 261 (340)
T TIGR00692 235 LEMSG----A----PKALEQGLQAVTPGGRVSLLG 261 (340)
T ss_pred EECCC----C----HHHHHHHHHhhcCCCEEEEEc
Confidence 86411 0 234566678899999987643
|
E. coli His-90 modulates substrate specificity and is believed part of the active site. |
| >cd05284 arabinose_DH_like D-arabinose dehydrogenase | Back alignment and domain information |
|---|
Probab=87.91 E-value=2.1 Score=38.16 Aligned_cols=95 Identities=25% Similarity=0.334 Sum_probs=58.6
Q ss_pred CCCCCCEEEEECCcc-cHHHHHHHHccC-CEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcc------cCCCCCCCCC
Q 048309 66 RVSKEHEVLEIGCGW-GTFAIEVVRQTG-CNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCD------YRQLPKAKKY 137 (288)
Q Consensus 66 ~~~~~~~vLDiGcG~-G~~~~~la~~~~-~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d------~~~~~~~~~f 137 (288)
...++.+||=.|+|. |..+..+++..+ .+|++++.+++..+.+++ .|.. .++..+ +..+.....+
T Consensus 164 ~~~~~~~vlI~g~~~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~i~~~~~~~~~ 236 (340)
T cd05284 164 YLDPGSTVVVIGVGGLGHIAVQILRALTPATVIAVDRSEEALKLAER----LGAD---HVLNASDDVVEEVRELTGGRGA 236 (340)
T ss_pred cCCCCCEEEEEcCcHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHH----hCCc---EEEcCCccHHHHHHHHhCCCCC
Confidence 355788999888664 666677777655 789999888877665533 3431 122111 1112233469
Q ss_pred CEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 138 DRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 138 D~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
|+++..-.- ...+..+.+.|+++|+++...
T Consensus 237 dvvld~~g~--------~~~~~~~~~~l~~~g~~i~~g 266 (340)
T cd05284 237 DAVIDFVGS--------DETLALAAKLLAKGGRYVIVG 266 (340)
T ss_pred CEEEEcCCC--------HHHHHHHHHHhhcCCEEEEEc
Confidence 999863211 234566678889999998643
|
This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d |
| >PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function | Back alignment and domain information |
|---|
Probab=87.82 E-value=1.7 Score=34.28 Aligned_cols=54 Identities=6% Similarity=0.135 Sum_probs=31.7
Q ss_pred EECCccc--HHHHHHH--Hc-cCCEEEEEcCCHHHHHHHHHH--HHHcCCCCceEEEEccc
Q 048309 75 EIGCGWG--TFAIEVV--RQ-TGCNYTGITLSAEQMKYAEMK--VNEAGLQDHIRLYLCDY 128 (288)
Q Consensus 75 DiGcG~G--~~~~~la--~~-~~~~v~giD~s~~~~~~a~~~--~~~~g~~~~v~~~~~d~ 128 (288)
|||++.| .....+. .. ++.+|+++|++|...+..+++ +.-+.....+++.....
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~~~~~~~~~~~~~ 61 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALNDKDGEVEFHPYAV 61 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHTTTSTTGGEEEE-S
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhcCCCceEEEEEeec
Confidence 8999999 6555543 22 567999999999999988888 54443222355555443
|
; PDB: 2PY6_A. |
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
Probab=87.71 E-value=2.6 Score=41.34 Aligned_cols=92 Identities=14% Similarity=0.059 Sum_probs=59.0
Q ss_pred CEEEEECCcc-cHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-----CCCCCCEEEEcc
Q 048309 71 HEVLEIGCGW-GTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-----KAKKYDRIISCE 144 (288)
Q Consensus 71 ~~vLDiGcG~-G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-----~~~~fD~I~~~~ 144 (288)
.+|+=+|+|. |..........+.+++.+|.+++.++.+++ .| ..++.+|..+.. .-++.|++++..
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~----~g----~~v~~GDat~~~~L~~agi~~A~~vv~~~ 472 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRK----YG----YKVYYGDATQLELLRAAGAEKAEAIVITC 472 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh----CC----CeEEEeeCCCHHHHHhcCCccCCEEEEEe
Confidence 4677777775 554333323357799999999999887764 23 578999998854 335788887752
Q ss_pred chhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 145 MMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 145 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
.- ++....+....+.+.|...++...
T Consensus 473 ~d-----~~~n~~i~~~~r~~~p~~~IiaRa 498 (601)
T PRK03659 473 NE-----PEDTMKIVELCQQHFPHLHILARA 498 (601)
T ss_pred CC-----HHHHHHHHHHHHHHCCCCeEEEEe
Confidence 21 222223334445677888888744
|
|
| >PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre | Back alignment and domain information |
|---|
Probab=87.54 E-value=13 Score=29.88 Aligned_cols=95 Identities=12% Similarity=0.115 Sum_probs=64.8
Q ss_pred CCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-----CCCCCCEEEEc
Q 048309 69 KEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-----KAKKYDRIISC 143 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-----~~~~fD~I~~~ 143 (288)
++.+|+-|||=+-.....-...++.+++.+|.+... +..+ ++ .++.-|..... ..++||+|++.
T Consensus 25 ~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~RF--------~~~~--~~-~F~fyD~~~p~~~~~~l~~~~d~vv~D 93 (162)
T PF10237_consen 25 DDTRIACLSTPSLYEALKKESKPRIQSFLLEYDRRF--------EQFG--GD-EFVFYDYNEPEELPEELKGKFDVVVID 93 (162)
T ss_pred CCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecchH--------HhcC--Cc-ceEECCCCChhhhhhhcCCCceEEEEC
Confidence 557999999977655444311256789999998753 2222 23 56666666532 34799999999
Q ss_pred cchhhhCHhhHHHHHHHHhcccccCcEEEEEee
Q 048309 144 EMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 144 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
..+ +..+-.......+.-++++++.+++.+.
T Consensus 94 PPF--l~~ec~~k~a~ti~~L~k~~~kii~~Tg 124 (162)
T PF10237_consen 94 PPF--LSEECLTKTAETIRLLLKPGGKIILCTG 124 (162)
T ss_pred CCC--CCHHHHHHHHHHHHHHhCccceEEEecH
Confidence 887 5545566677777777789899888543
|
This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ). |
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=87.47 E-value=14 Score=30.92 Aligned_cols=103 Identities=13% Similarity=0.038 Sum_probs=59.6
Q ss_pred CCCEEEEECCcccHHHHHHHH---ccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-----------CC
Q 048309 69 KEHEVLEIGCGWGTFAIEVVR---QTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-----------KA 134 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~~la~---~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-----------~~ 134 (288)
++++||-.|++. ..+..+++ ..+.+|++++-+++..+...+..... .++.++.+|+.+.. .-
T Consensus 4 ~~~~vlItGa~g-~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 79 (238)
T PRK05786 4 KGKKVAIIGVSE-GLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKY---GNIHYVVGDVSSTESARNVIEKAAKVL 79 (238)
T ss_pred CCcEEEEECCCc-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc---CCeEEEECCCCCHHHHHHHHHHHHHHh
Confidence 457899888753 33333332 25889999999887666554444332 25788899987642 11
Q ss_pred CCCCEEEEccchhhh-CH---hh-----------HHHHHHHHhcccccCcEEEEEe
Q 048309 135 KKYDRIISCEMMEAV-GH---EY-----------MEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 135 ~~fD~I~~~~~l~~~-~~---~~-----------~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
+..|.++........ +. ++ ...+++.+...++++|.+++..
T Consensus 80 ~~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~s 135 (238)
T PRK05786 80 NAIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVS 135 (238)
T ss_pred CCCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEe
Confidence 356888765532110 00 11 1123455556667788777644
|
|
| >PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=87.43 E-value=7.6 Score=34.16 Aligned_cols=94 Identities=22% Similarity=0.289 Sum_probs=56.7
Q ss_pred CEEEEECCcc-cH-HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHc----------CC---------CCceEEEEcccC
Q 048309 71 HEVLEIGCGW-GT-FAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEA----------GL---------QDHIRLYLCDYR 129 (288)
Q Consensus 71 ~~vLDiGcG~-G~-~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~----------g~---------~~~v~~~~~d~~ 129 (288)
.+|.=||+|. |. ++..++. .+.+|+.+|.+++.++.+++.+... +. ..++.+. .|.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~-~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~- 80 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFAR-TGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTS-TSY- 80 (291)
T ss_pred cEEEEECccHHHHHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEee-CCH-
Confidence 4688899995 44 4455555 4789999999999998776544321 11 0011111 122
Q ss_pred CCCCCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEE
Q 048309 130 QLPKAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLV 172 (288)
Q Consensus 130 ~~~~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~ 172 (288)
..-...|+|+..- .+.. +....+++++...++++..++
T Consensus 81 --~~~~~aDlVieav-~e~~--~~k~~~~~~l~~~~~~~~il~ 118 (291)
T PRK06035 81 --ESLSDADFIVEAV-PEKL--DLKRKVFAELERNVSPETIIA 118 (291)
T ss_pred --HHhCCCCEEEEcC-cCcH--HHHHHHHHHHHhhCCCCeEEE
Confidence 1124578888642 2222 345778888888888877654
|
|
| >cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2 | Back alignment and domain information |
|---|
Probab=87.34 E-value=9.1 Score=34.10 Aligned_cols=95 Identities=17% Similarity=0.203 Sum_probs=58.6
Q ss_pred HcCCCCCCEEEEECCcc-cHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCC-------CCCC
Q 048309 64 KARVSKEHEVLEIGCGW-GTFAIEVVRQTGC-NYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQ-------LPKA 134 (288)
Q Consensus 64 ~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~-------~~~~ 134 (288)
.....++.+||=.|+|. |..+..+++..+. ++++++.+++..+.+++ .|. ..+..+-.+ ....
T Consensus 162 ~~~~~~~~~vlI~g~g~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~----~g~----~~~~~~~~~~~~~l~~~~~~ 233 (344)
T cd08284 162 RAQVRPGDTVAVIGCGPVGLCAVLSAQVLGAARVFAVDPVPERLERAAA----LGA----EPINFEDAEPVERVREATEG 233 (344)
T ss_pred hcCCccCCEEEEECCcHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHH----hCC----eEEecCCcCHHHHHHHHhCC
Confidence 35566788988888764 6677777777675 79999888766655443 232 112221111 1133
Q ss_pred CCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 135 KKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 135 ~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
..+|+++-...- ...+....+.|+++|+++..
T Consensus 234 ~~~dvvid~~~~--------~~~~~~~~~~l~~~g~~v~~ 265 (344)
T cd08284 234 RGADVVLEAVGG--------AAALDLAFDLVRPGGVISSV 265 (344)
T ss_pred CCCCEEEECCCC--------HHHHHHHHHhcccCCEEEEE
Confidence 569998863210 23456667888999998764
|
Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical |
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=87.31 E-value=0.65 Score=39.54 Aligned_cols=53 Identities=21% Similarity=0.220 Sum_probs=36.9
Q ss_pred eEEEEcccCCCC---CCCCCCEEEEccchhh-----hC--------HhhHHHHHHHHhcccccCcEEEE
Q 048309 121 IRLYLCDYRQLP---KAKKYDRIISCEMMEA-----VG--------HEYMEEYFGCCESLLAKDGLLVL 173 (288)
Q Consensus 121 v~~~~~d~~~~~---~~~~fD~I~~~~~l~~-----~~--------~~~~~~~l~~~~~~LkpgG~l~~ 173 (288)
++++++|..+.- +++++|+|++.....- .+ .+-....+.+++++|||||.+++
T Consensus 2 ~~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~i 70 (227)
T PRK13699 2 SRFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVS 70 (227)
T ss_pred CeEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 356778886642 6789999998754420 00 02245788999999999998876
|
|
| >PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=87.19 E-value=9.3 Score=33.42 Aligned_cols=94 Identities=16% Similarity=0.218 Sum_probs=57.9
Q ss_pred EEEEECCcc--cHHHHHHHHccCCEEEEEcCCHHHHHHHHHHH-------HHcCC-C--------CceEEEEcccCCCCC
Q 048309 72 EVLEIGCGW--GTFAIEVVRQTGCNYTGITLSAEQMKYAEMKV-------NEAGL-Q--------DHIRLYLCDYRQLPK 133 (288)
Q Consensus 72 ~vLDiGcG~--G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~-------~~~g~-~--------~~v~~~~~d~~~~~~ 133 (288)
+|.=||+|. +.++..++.. +.+|+++|.+++.++.+++++ .+.|. . .++++ ..|...
T Consensus 5 kI~VIG~G~mG~~ia~~la~~-g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~-~~~~~~--- 79 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVA-GYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG-TTDLDD--- 79 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHC-CCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCCHHH---
Confidence 577789985 4555666664 779999999999987665432 22221 1 02221 223222
Q ss_pred CCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEE
Q 048309 134 AKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVL 173 (288)
Q Consensus 134 ~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~ 173 (288)
-...|+|+..- .+.+ ....++++++.+.++|+..+..
T Consensus 80 ~~~aDlVi~av-~e~~--~~k~~~~~~l~~~~~~~~il~s 116 (282)
T PRK05808 80 LKDADLVIEAA-TENM--DLKKKIFAQLDEIAKPEAILAT 116 (282)
T ss_pred hccCCeeeecc-cccH--HHHHHHHHHHHhhCCCCcEEEE
Confidence 25678887642 2222 3346889999999998876644
|
|
| >PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional | Back alignment and domain information |
|---|
Probab=87.16 E-value=4.8 Score=39.70 Aligned_cols=92 Identities=11% Similarity=0.077 Sum_probs=59.9
Q ss_pred CEEEEECCcc-cHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-----CCCCCCEEEEcc
Q 048309 71 HEVLEIGCGW-GTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-----KAKKYDRIISCE 144 (288)
Q Consensus 71 ~~vLDiGcG~-G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-----~~~~fD~I~~~~ 144 (288)
.+|+=+|||. |..........+..++.+|.+++.++.+++. ...++.+|..+.. .-+++|++++..
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~--------g~~v~~GDat~~~~L~~agi~~A~~vvv~~ 472 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKF--------GMKVFYGDATRMDLLESAGAAKAEVLINAI 472 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhc--------CCeEEEEeCCCHHHHHhcCCCcCCEEEEEe
Confidence 5788899986 6654443333477899999999998877652 3578999998864 235788887753
Q ss_pred chhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 145 MMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 145 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
.- ++....+....+.+.|.-.+++..
T Consensus 473 ~d-----~~~n~~i~~~ar~~~p~~~iiaRa 498 (621)
T PRK03562 473 DD-----PQTSLQLVELVKEHFPHLQIIARA 498 (621)
T ss_pred CC-----HHHHHHHHHHHHHhCCCCeEEEEE
Confidence 21 222333333445556776666643
|
|
| >cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=87.03 E-value=4.1 Score=36.45 Aligned_cols=97 Identities=19% Similarity=0.183 Sum_probs=61.6
Q ss_pred HHcCCCCCCEEEEECCcc-cHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEc----ccCC-CC--CC
Q 048309 63 EKARVSKEHEVLEIGCGW-GTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLC----DYRQ-LP--KA 134 (288)
Q Consensus 63 ~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~----d~~~-~~--~~ 134 (288)
......++.+||=.|+|. |..+..+++..+.++++++.+++..+.+++ .|.. +++.. +... +. ..
T Consensus 159 ~~~~~~~~~~vlV~g~g~vg~~~~~~a~~~G~~vi~~~~~~~~~~~~~~----~g~~---~~i~~~~~~~~~~~~~~~~~ 231 (345)
T cd08260 159 HQARVKPGEWVAVHGCGGVGLSAVMIASALGARVIAVDIDDDKLELARE----LGAV---ATVNASEVEDVAAAVRDLTG 231 (345)
T ss_pred HccCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHH----hCCC---EEEccccchhHHHHHHHHhC
Confidence 344566788999889764 777788888778899999989887776643 2431 22221 1111 11 11
Q ss_pred CCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 135 KKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 135 ~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
+.+|+++..-. -...+....+.|+++|.++..
T Consensus 232 ~~~d~vi~~~g--------~~~~~~~~~~~l~~~g~~i~~ 263 (345)
T cd08260 232 GGAHVSVDALG--------IPETCRNSVASLRKRGRHVQV 263 (345)
T ss_pred CCCCEEEEcCC--------CHHHHHHHHHHhhcCCEEEEe
Confidence 27999886421 023455667889999998864
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty |
| >PTZ00075 Adenosylhomocysteinase; Provisional | Back alignment and domain information |
|---|
Probab=86.97 E-value=2.1 Score=40.47 Aligned_cols=88 Identities=11% Similarity=0.061 Sum_probs=55.4
Q ss_pred CCCCEEEEECCcc-cHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCEEEEccch
Q 048309 68 SKEHEVLEIGCGW-GTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMM 146 (288)
Q Consensus 68 ~~~~~vLDiGcG~-G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~~~~~l 146 (288)
-.|++|+=+|+|. |......++..+++|+.+|.++.....+.. .|. ++. ++.++ -...|+|++...-
T Consensus 252 LaGKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~----~G~----~~~--~leel--l~~ADIVI~atGt 319 (476)
T PTZ00075 252 IAGKTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAM----EGY----QVV--TLEDV--VETADIFVTATGN 319 (476)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHh----cCc----eec--cHHHH--HhcCCEEEECCCc
Confidence 4688999999997 665555555578899999888765433321 232 221 22222 2578999875322
Q ss_pred hhhCHhhHHHHH-HHHhcccccCcEEEEEe
Q 048309 147 EAVGHEYMEEYF-GCCESLLAKDGLLVLQF 175 (288)
Q Consensus 147 ~~~~~~~~~~~l-~~~~~~LkpgG~l~~~~ 175 (288)
.+ ++ .+....+|||++++-..
T Consensus 320 ~~--------iI~~e~~~~MKpGAiLINvG 341 (476)
T PTZ00075 320 KD--------IITLEHMRRMKNNAIVGNIG 341 (476)
T ss_pred cc--------ccCHHHHhccCCCcEEEEcC
Confidence 22 22 35568899999888743
|
|
| >cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=86.96 E-value=2.4 Score=37.11 Aligned_cols=97 Identities=19% Similarity=0.215 Sum_probs=59.7
Q ss_pred HcCCCCCCEEEEECCc-ccHHHHHHHHccCCE-EEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCC-------CCCC
Q 048309 64 KARVSKEHEVLEIGCG-WGTFAIEVVRQTGCN-YTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQ-------LPKA 134 (288)
Q Consensus 64 ~~~~~~~~~vLDiGcG-~G~~~~~la~~~~~~-v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~-------~~~~ 134 (288)
.....++.+||=.|+| .|..+..+++..+.+ +++++.+++..+.+++ .|.. .++...-.+ +...
T Consensus 124 ~~~~~~~~~vlI~g~g~vg~~~~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~l~~~~~~ 196 (312)
T cd08269 124 RGWIRAGKTVAVIGAGFIGLLFLQLAAAAGARRVIAIDRRPARLALARE----LGAT---EVVTDDSEAIVERVRELTGG 196 (312)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----hCCc---eEecCCCcCHHHHHHHHcCC
Confidence 4556788888888865 367777777777778 9999888776664432 3331 222211111 1133
Q ss_pred CCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 135 KKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 135 ~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
..+|+++....- ...+....+.|+++|.++...
T Consensus 197 ~~vd~vld~~g~--------~~~~~~~~~~l~~~g~~~~~g 229 (312)
T cd08269 197 AGADVVIEAVGH--------QWPLDLAGELVAERGRLVIFG 229 (312)
T ss_pred CCCCEEEECCCC--------HHHHHHHHHHhccCCEEEEEc
Confidence 569999864211 224555668899999988743
|
The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i |
| >PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=86.87 E-value=11 Score=33.09 Aligned_cols=99 Identities=21% Similarity=0.232 Sum_probs=59.3
Q ss_pred CEEEEECCcc-c-HHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHc-------CC-C--------CceEEEEcccCCCC
Q 048309 71 HEVLEIGCGW-G-TFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEA-------GL-Q--------DHIRLYLCDYRQLP 132 (288)
Q Consensus 71 ~~vLDiGcG~-G-~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~-------g~-~--------~~v~~~~~d~~~~~ 132 (288)
.+|.=||+|. | .++..++. .+.+|+.+|.+++.++.+.+.+... +. + .++++ ..|...
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~-~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~-- 80 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCAL-AGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARIST-ATDLED-- 80 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHH-CCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEe-eCCHHH--
Confidence 4688899986 3 34455555 4789999999999888765543221 21 0 11222 223322
Q ss_pred CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 133 KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 133 ~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
-...|+|+..-. +.. +....+++++...++++..++..+.+
T Consensus 81 -~~~aD~Vieavp-e~~--~~k~~~~~~l~~~~~~~~ii~s~ts~ 121 (292)
T PRK07530 81 -LADCDLVIEAAT-EDE--TVKRKIFAQLCPVLKPEAILATNTSS 121 (292)
T ss_pred -hcCCCEEEEcCc-CCH--HHHHHHHHHHHhhCCCCcEEEEcCCC
Confidence 246888886521 211 33567788888899998876644433
|
|
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=86.85 E-value=5.1 Score=35.10 Aligned_cols=84 Identities=15% Similarity=0.191 Sum_probs=51.8
Q ss_pred EEEEECCcc--cHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCEEEEccchhhh
Q 048309 72 EVLEIGCGW--GTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMMEAV 149 (288)
Q Consensus 72 ~vLDiGcG~--G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~~~~~l~~~ 149 (288)
+|.=||+|. |.++..+.+. +.+|+++|.+++.++.+.+. |. +.....+.. .-...|+|+..-...
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~-g~~V~~~d~~~~~~~~a~~~----g~---~~~~~~~~~---~~~~aDlVilavp~~-- 68 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSL-GHTVYGVSRRESTCERAIER----GL---VDEASTDLS---LLKDCDLVILALPIG-- 68 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHC----CC---cccccCCHh---HhcCCCEEEEcCCHH--
Confidence 466788885 4456666654 77999999999887666432 22 111111111 125689998865433
Q ss_pred CHhhHHHHHHHHhcccccCcEE
Q 048309 150 GHEYMEEYFGCCESLLAKDGLL 171 (288)
Q Consensus 150 ~~~~~~~~l~~~~~~LkpgG~l 171 (288)
...++++++...++++..+
T Consensus 69 ---~~~~~~~~l~~~l~~~~ii 87 (279)
T PRK07417 69 ---LLLPPSEQLIPALPPEAIV 87 (279)
T ss_pred ---HHHHHHHHHHHhCCCCcEE
Confidence 3356677887888776433
|
|
| >cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase | Back alignment and domain information |
|---|
Probab=86.53 E-value=12 Score=33.64 Aligned_cols=92 Identities=22% Similarity=0.256 Sum_probs=58.1
Q ss_pred CCCCEEEEECCcc-cHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCC----CC--CCCCCCE
Q 048309 68 SKEHEVLEIGCGW-GTFAIEVVRQTGC-NYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQ----LP--KAKKYDR 139 (288)
Q Consensus 68 ~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~----~~--~~~~fD~ 139 (288)
.++.+||-.|+|. |..+..+++..+. .|++++.+++..+.+++ .|.. .++...-.+ +. ..+.+|+
T Consensus 174 ~~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~~~~~d~ 246 (350)
T cd08240 174 VADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKA----AGAD---VVVNGSDPDAAKRIIKAAGGGVDA 246 (350)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----hCCc---EEecCCCccHHHHHHHHhCCCCcE
Confidence 4678898888874 7778888887666 78999988887766643 2331 222211111 11 1236899
Q ss_pred EEEccchhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 140 IISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 140 I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
++.... ....+..+.+.|+++|+++..
T Consensus 247 vid~~g--------~~~~~~~~~~~l~~~g~~v~~ 273 (350)
T cd08240 247 VIDFVN--------NSATASLAFDILAKGGKLVLV 273 (350)
T ss_pred EEECCC--------CHHHHHHHHHHhhcCCeEEEE
Confidence 886421 023466667889999998864
|
6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy |
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=86.33 E-value=5.7 Score=35.29 Aligned_cols=87 Identities=25% Similarity=0.248 Sum_probs=51.7
Q ss_pred CEEEEECCcc-cH-HHHHHHHccC--CEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCEEEEccch
Q 048309 71 HEVLEIGCGW-GT-FAIEVVRQTG--CNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMM 146 (288)
Q Consensus 71 ~~vLDiGcG~-G~-~~~~la~~~~--~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~~~~~l 146 (288)
.+|.=||+|. |. ++..+.+. + .+|+++|.+++..+.+++ .|.. .. ...+..+ .-...|+|+..-..
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~-g~~~~V~~~dr~~~~~~~a~~----~g~~--~~-~~~~~~~--~~~~aDvViiavp~ 76 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRL-GLAGEIVGADRSAETRARARE----LGLG--DR-VTTSAAE--AVKGADLVILCVPV 76 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhc-CCCcEEEEEECCHHHHHHHHh----CCCC--ce-ecCCHHH--HhcCCCEEEECCCH
Confidence 5788899986 43 44444443 3 489999999987665543 3321 11 1112111 12468999876544
Q ss_pred hhhCHhhHHHHHHHHhcccccCcEEE
Q 048309 147 EAVGHEYMEEYFGCCESLLAKDGLLV 172 (288)
Q Consensus 147 ~~~~~~~~~~~l~~~~~~LkpgG~l~ 172 (288)
.. ...+++++...+++|..++
T Consensus 77 ~~-----~~~v~~~l~~~l~~~~iv~ 97 (307)
T PRK07502 77 GA-----SGAVAAEIAPHLKPGAIVT 97 (307)
T ss_pred HH-----HHHHHHHHHhhCCCCCEEE
Confidence 33 3556677777788887554
|
|
| >COG4017 Uncharacterized protein conserved in archaea [Function unknown] | Back alignment and domain information |
|---|
Probab=86.26 E-value=1.8 Score=35.64 Aligned_cols=98 Identities=10% Similarity=0.140 Sum_probs=64.8
Q ss_pred HHHHHHcCCCCCCEEEEECCc-ccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCC
Q 048309 59 SLLIEKARVSKEHEVLEIGCG-WGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKY 137 (288)
Q Consensus 59 ~~l~~~~~~~~~~~vLDiGcG-~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~f 137 (288)
+.+........++.+|-+|.- ||.....+.+. .++|+.+|+.|.+... ++++++|..+ . .+..+.+
T Consensus 34 ~ai~~~~~~~E~~~vli~G~YltG~~~a~~Ls~-~~~vtv~Di~p~~r~~---------lp~~v~Fr~~--~-~~~~G~~ 100 (254)
T COG4017 34 QAIRDFLEGEEFKEVLIFGVYLTGNYTAQMLSK-ADKVTVVDIHPFMRGF---------LPNNVKFRNL--L-KFIRGEV 100 (254)
T ss_pred HHhhhhhcccCcceEEEEEeeehhHHHHHHhcc-cceEEEecCCHHHHhc---------CCCCccHhhh--c-CCCCCce
Confidence 333334444567899999976 78888888775 7899999999976432 2345666555 1 1256889
Q ss_pred CEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecC
Q 048309 138 DRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSST 178 (288)
Q Consensus 138 D~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 178 (288)
|+|+-.-.+..+.++.+ +-+.| ++|++.+...
T Consensus 101 DlivDlTGlGG~~Pe~L--------~~fnp-~vfiVEdP~g 132 (254)
T COG4017 101 DLIVDLTGLGGIEPEFL--------AKFNP-KVFIVEDPKG 132 (254)
T ss_pred eEEEeccccCCCCHHHH--------hccCC-ceEEEECCCC
Confidence 99998877777754333 33444 4566655443
|
|
| >PRK07533 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=86.19 E-value=15 Score=31.44 Aligned_cols=103 Identities=16% Similarity=0.106 Sum_probs=58.4
Q ss_pred CCCEEEEECCccc-HHH----HHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-----------
Q 048309 69 KEHEVLEIGCGWG-TFA----IEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP----------- 132 (288)
Q Consensus 69 ~~~~vLDiGcG~G-~~~----~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~----------- 132 (288)
.++.+|-.|+++| ..+ ..+++ .+++|+.++.++...+..++..++.+ .+.++..|+.+..
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~-~G~~v~l~~r~~~~~~~~~~~~~~~~---~~~~~~~D~~~~~~v~~~~~~~~~ 84 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRA-LGAELAVTYLNDKARPYVEPLAEELD---APIFLPLDVREPGQLEAVFARIAE 84 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHH-cCCEEEEEeCChhhHHHHHHHHHhhc---cceEEecCcCCHHHHHHHHHHHHH
Confidence 4678999997642 333 34444 47899888887654333333333222 3457778887642
Q ss_pred CCCCCCEEEEccchhh----------hCHhhHHHH-----------HHHHhcccccCcEEEEEe
Q 048309 133 KAKKYDRIISCEMMEA----------VGHEYMEEY-----------FGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 133 ~~~~fD~I~~~~~l~~----------~~~~~~~~~-----------l~~~~~~LkpgG~l~~~~ 175 (288)
.-+..|+++.+..+.. .+.++.... .+.+...|+.+|.++...
T Consensus 85 ~~g~ld~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~g~Ii~is 148 (258)
T PRK07533 85 EWGRLDFLLHSIAFAPKEDLHGRVVDCSREGFALAMDVSCHSFIRMARLAEPLMTNGGSLLTMS 148 (258)
T ss_pred HcCCCCEEEEcCccCCcccccCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhccCCEEEEEe
Confidence 1257899987754321 122233222 345556667778776543
|
|
| >KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=86.15 E-value=6.9 Score=34.55 Aligned_cols=74 Identities=18% Similarity=0.301 Sum_probs=57.3
Q ss_pred CCCEEEEECCcccH---HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-----------CC
Q 048309 69 KEHEVLEIGCGWGT---FAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-----------KA 134 (288)
Q Consensus 69 ~~~~vLDiGcG~G~---~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-----------~~ 134 (288)
.|+.||--|.|.|. .+..+|++ ++.++..|++++..+...+.++..| ++.....|+.+.. .-
T Consensus 37 ~g~~vLITGgg~GlGr~ialefa~r-g~~~vl~Din~~~~~etv~~~~~~g---~~~~y~cdis~~eei~~~a~~Vk~e~ 112 (300)
T KOG1201|consen 37 SGEIVLITGGGSGLGRLIALEFAKR-GAKLVLWDINKQGNEETVKEIRKIG---EAKAYTCDISDREEIYRLAKKVKKEV 112 (300)
T ss_pred cCCEEEEeCCCchHHHHHHHHHHHh-CCeEEEEeccccchHHHHHHHHhcC---ceeEEEecCCCHHHHHHHHHHHHHhc
Confidence 57889988888764 45666765 7899999999999888888887765 6889999997742 23
Q ss_pred CCCCEEEEccch
Q 048309 135 KKYDRIISCEMM 146 (288)
Q Consensus 135 ~~fD~I~~~~~l 146 (288)
+..|+++.+..+
T Consensus 113 G~V~ILVNNAGI 124 (300)
T KOG1201|consen 113 GDVDILVNNAGI 124 (300)
T ss_pred CCceEEEecccc
Confidence 678888887644
|
|
| >KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=86.07 E-value=2.2 Score=38.01 Aligned_cols=104 Identities=14% Similarity=0.134 Sum_probs=63.8
Q ss_pred HHHHHHcCCCCCCEEEEECCcc-cHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEc-ccCC----C
Q 048309 59 SLLIEKARVSKEHEVLEIGCGW-GTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLC-DYRQ----L 131 (288)
Q Consensus 59 ~~l~~~~~~~~~~~vLDiGcG~-G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~-d~~~----~ 131 (288)
...+..+...+|.++.-+|+|. |.....-++. ...+++|||++++-.+.|++. |.+ ++++- |..+ .
T Consensus 182 GAa~~~Akv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~f----GaT---e~iNp~d~~~~i~ev 254 (375)
T KOG0022|consen 182 GAAWNTAKVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEF----GAT---EFINPKDLKKPIQEV 254 (375)
T ss_pred hhhhhhcccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhc----Ccc---eecChhhccccHHHH
Confidence 4455667788999999999987 6655555655 556899999999999888765 332 23221 3333 0
Q ss_pred --C-CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccC-cEEEEEeec
Q 048309 132 --P-KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKD-GLLVLQFSS 177 (288)
Q Consensus 132 --~-~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~~ 177 (288)
+ .++.+|.-+- .++ ..+.++++....+.| |.-++.-..
T Consensus 255 i~EmTdgGvDysfE-----c~G---~~~~m~~al~s~h~GwG~sv~iGv~ 296 (375)
T KOG0022|consen 255 IIEMTDGGVDYSFE-----CIG---NVSTMRAALESCHKGWGKSVVIGVA 296 (375)
T ss_pred HHHHhcCCceEEEE-----ecC---CHHHHHHHHHHhhcCCCeEEEEEec
Confidence 1 3466776552 221 123344444555667 776664443
|
|
| >cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=85.50 E-value=4 Score=36.00 Aligned_cols=98 Identities=20% Similarity=0.235 Sum_probs=59.8
Q ss_pred HHcCCCCCCEEEEECCc--ccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcc--cC----CCCCC
Q 048309 63 EKARVSKEHEVLEIGCG--WGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCD--YR----QLPKA 134 (288)
Q Consensus 63 ~~~~~~~~~~vLDiGcG--~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d--~~----~~~~~ 134 (288)
......++.++|-.|.+ .|..+..++...+.+++.++.++...+.++. .+.. ..+-..+ .. .....
T Consensus 160 ~~~~~~~~~~vlI~g~~~~iG~~~~~~~~~~g~~v~~~~~~~~~~~~~~~----~~~~--~~~~~~~~~~~~~~~~~~~~ 233 (342)
T cd08266 160 TRARLRPGETVLVHGAGSGVGSAAIQIAKLFGATVIATAGSEDKLERAKE----LGAD--YVIDYRKEDFVREVRELTGK 233 (342)
T ss_pred HhcCCCCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCCC--eEEecCChHHHHHHHHHhCC
Confidence 34556778899988865 5777777777678899999988877665532 2321 1111111 10 01123
Q ss_pred CCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 135 KKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 135 ~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
..+|.++....- ..+..+.+.|+++|.++...
T Consensus 234 ~~~d~~i~~~g~---------~~~~~~~~~l~~~G~~v~~~ 265 (342)
T cd08266 234 RGVDVVVEHVGA---------ATWEKSLKSLARGGRLVTCG 265 (342)
T ss_pred CCCcEEEECCcH---------HHHHHHHHHhhcCCEEEEEe
Confidence 468988865331 23445567889999988754
|
This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone |
| >cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1 | Back alignment and domain information |
|---|
Probab=85.44 E-value=1.5 Score=38.94 Aligned_cols=91 Identities=9% Similarity=0.036 Sum_probs=54.5
Q ss_pred CCCEEEEE--CCc-ccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCC-------CCCCCCC
Q 048309 69 KEHEVLEI--GCG-WGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQL-------PKAKKYD 138 (288)
Q Consensus 69 ~~~~vLDi--GcG-~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~-------~~~~~fD 138 (288)
++..++=+ |+| .|..+..+++..+.++++++.+++..+.+++ .|.. .++..+-.++ .....+|
T Consensus 142 ~~~~vlv~~~g~g~vG~~a~q~a~~~G~~vi~~~~~~~~~~~~~~----~g~~---~~i~~~~~~~~~~v~~~~~~~~~d 214 (324)
T cd08291 142 EGAKAVVHTAAASALGRMLVRLCKADGIKVINIVRRKEQVDLLKK----IGAE---YVLNSSDPDFLEDLKELIAKLNAT 214 (324)
T ss_pred CCCcEEEEccCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCCc---EEEECCCccHHHHHHHHhCCCCCc
Confidence 34444433 555 4888888888878899999999887777755 2331 2232221111 1234689
Q ss_pred EEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 139 RIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 139 ~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
+++-.-. .. ......+.|+++|+++...
T Consensus 215 ~vid~~g-----~~----~~~~~~~~l~~~G~~v~~g 242 (324)
T cd08291 215 IFFDAVG-----GG----LTGQILLAMPYGSTLYVYG 242 (324)
T ss_pred EEEECCC-----cH----HHHHHHHhhCCCCEEEEEE
Confidence 8885322 11 1233457789999988754
|
2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin |
| >PRK05396 tdh L-threonine 3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=85.11 E-value=2.2 Score=38.20 Aligned_cols=94 Identities=17% Similarity=0.175 Sum_probs=58.3
Q ss_pred CCCCEEEEECCcc-cHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEc---cc----CCCCCCCCCC
Q 048309 68 SKEHEVLEIGCGW-GTFAIEVVRQTGC-NYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLC---DY----RQLPKAKKYD 138 (288)
Q Consensus 68 ~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~---d~----~~~~~~~~fD 138 (288)
.++.+|+-.|+|. |..+..+++..+. .|++++.+++..+.+++. |.. .++.. +. ..+.....+|
T Consensus 162 ~~g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~l----g~~---~~~~~~~~~~~~~~~~~~~~~~~d 234 (341)
T PRK05396 162 LVGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARKM----GAT---RAVNVAKEDLRDVMAELGMTEGFD 234 (341)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHh----CCc---EEecCccccHHHHHHHhcCCCCCC
Confidence 4678888788775 7778888887666 688888888766655442 331 12211 11 1122345789
Q ss_pred EEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEee
Q 048309 139 RIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 139 ~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
+|+....- ...+..+.+.|+++|.++....
T Consensus 235 ~v~d~~g~--------~~~~~~~~~~l~~~G~~v~~g~ 264 (341)
T PRK05396 235 VGLEMSGA--------PSAFRQMLDNMNHGGRIAMLGI 264 (341)
T ss_pred EEEECCCC--------HHHHHHHHHHHhcCCEEEEEec
Confidence 99863210 2345556688999999988643
|
|
| >PRK10669 putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
Probab=84.99 E-value=4 Score=39.62 Aligned_cols=91 Identities=14% Similarity=0.073 Sum_probs=56.2
Q ss_pred CEEEEECCcc-cHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-----CCCCCCEEEEcc
Q 048309 71 HEVLEIGCGW-GTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-----KAKKYDRIISCE 144 (288)
Q Consensus 71 ~~vLDiGcG~-G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-----~~~~fD~I~~~~ 144 (288)
.+++=+|||. |.......+..+.+++.+|.+++.++.+++. ....+.+|..+.. .-+++|.+++.-
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~--------g~~~i~GD~~~~~~L~~a~i~~a~~viv~~ 489 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRER--------GIRAVLGNAANEEIMQLAHLDCARWLLLTI 489 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHC--------CCeEEEcCCCCHHHHHhcCccccCEEEEEc
Confidence 5777788885 5543333332477899999999988777642 3689999998853 235888776532
Q ss_pred chhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 145 MMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 145 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
.- ++....+-.+.+...|...++..
T Consensus 490 ~~-----~~~~~~iv~~~~~~~~~~~iiar 514 (558)
T PRK10669 490 PN-----GYEAGEIVASAREKRPDIEIIAR 514 (558)
T ss_pred CC-----hHHHHHHHHHHHHHCCCCeEEEE
Confidence 11 11122233333555677777764
|
|
| >cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=84.89 E-value=12 Score=33.33 Aligned_cols=95 Identities=20% Similarity=0.211 Sum_probs=58.8
Q ss_pred HHcCCCCCCEEEEECC-c-ccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCC-----CCCCC
Q 048309 63 EKARVSKEHEVLEIGC-G-WGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQ-----LPKAK 135 (288)
Q Consensus 63 ~~~~~~~~~~vLDiGc-G-~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~-----~~~~~ 135 (288)
....+.++.+||-.|+ | .|..+..+++..++++++++.+. ..+.+ +..|.. .+...+-.. .....
T Consensus 171 ~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~~~-~~~~~----~~~g~~---~~~~~~~~~~~~~~~~~~~ 242 (350)
T cd08274 171 ERAGVGAGETVLVTGASGGVGSALVQLAKRRGAIVIAVAGAA-KEEAV----RALGAD---TVILRDAPLLADAKALGGE 242 (350)
T ss_pred hhcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCch-hhHHH----HhcCCe---EEEeCCCccHHHHHhhCCC
Confidence 4456778899999997 3 47788888888788898888544 44433 233431 222111111 11335
Q ss_pred CCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 136 KYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 136 ~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
.+|+++.... ...+..+.+.|+++|.++..
T Consensus 243 ~~d~vi~~~g---------~~~~~~~~~~l~~~G~~v~~ 272 (350)
T cd08274 243 PVDVVADVVG---------GPLFPDLLRLLRPGGRYVTA 272 (350)
T ss_pred CCcEEEecCC---------HHHHHHHHHHhccCCEEEEe
Confidence 6999986422 12455667899999998864
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh |
| >KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only] | Back alignment and domain information |
|---|
Probab=84.88 E-value=1.5 Score=42.30 Aligned_cols=95 Identities=19% Similarity=0.168 Sum_probs=60.1
Q ss_pred CCCCCEEEEECCcccHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC---------CCC
Q 048309 67 VSKEHEVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP---------KAK 135 (288)
Q Consensus 67 ~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~---------~~~ 135 (288)
+.++..|||+||.+|.+..-.++. .+.-|+|+|+.|-- .+ +++.-++.|+..-. ..-
T Consensus 42 l~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pik-----------p~-~~c~t~v~dIttd~cr~~l~k~l~t~ 109 (780)
T KOG1098|consen 42 LEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIK-----------PI-PNCDTLVEDITTDECRSKLRKILKTW 109 (780)
T ss_pred ccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeecc-----------cC-CccchhhhhhhHHHHHHHHHHHHHhC
Confidence 457788999999999998887776 56679999987621 12 35666666664321 123
Q ss_pred CCCEEEEccchh----hhC-----HhhHHHHHHHHhcccccCcEEEE
Q 048309 136 KYDRIISCEMME----AVG-----HEYMEEYFGCCESLLAKDGLLVL 173 (288)
Q Consensus 136 ~fD~I~~~~~l~----~~~-----~~~~~~~l~~~~~~LkpgG~l~~ 173 (288)
+.|+|+..++-. +.. ..-.-..++-+...|+.||.++-
T Consensus 110 ~advVLhDgapnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fvt 156 (780)
T KOG1098|consen 110 KADVVLHDGAPNVGGNWVQDAFQQACLTLRALKLATEFLAKGGTFVT 156 (780)
T ss_pred CCcEEeecCCCccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCcccc
Confidence 468888754321 110 01123356666788899999543
|
|
| >PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown | Back alignment and domain information |
|---|
Probab=84.88 E-value=1.3 Score=33.97 Aligned_cols=89 Identities=12% Similarity=0.088 Sum_probs=47.6
Q ss_pred CCEEEEECCccc-HHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC--CCCCCCEEEEccch
Q 048309 70 EHEVLEIGCGWG-TFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP--KAKKYDRIISCEMM 146 (288)
Q Consensus 70 ~~~vLDiGcG~G-~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~--~~~~fD~I~~~~~l 146 (288)
..+|+|+|-|.- ..+..|.+ .|..|+++|+.+. .+. . .+.++..|+.+.. .-...|+|.+.-.-
T Consensus 14 ~~kiVEVGiG~~~~vA~~L~~-~G~dV~~tDi~~~-------~a~-~----g~~~v~DDif~P~l~iY~~a~lIYSiRPP 80 (127)
T PF03686_consen 14 YGKIVEVGIGFNPEVAKKLKE-RGFDVIATDINPR-------KAP-E----GVNFVVDDIFNPNLEIYEGADLIYSIRPP 80 (127)
T ss_dssp SSEEEEET-TT--HHHHHHHH-HS-EEEEE-SS-S----------------STTEE---SSS--HHHHTTEEEEEEES--
T ss_pred CCcEEEECcCCCHHHHHHHHH-cCCcEEEEECccc-------ccc-c----CcceeeecccCCCHHHhcCCcEEEEeCCC
Confidence 349999999974 45555555 4799999999986 112 2 4678999998854 23589999986432
Q ss_pred hhhCHhhHHHHHHHHhcccccCcEEEEEeecC
Q 048309 147 EAVGHEYMEEYFGCCESLLAKDGLLVLQFSST 178 (288)
Q Consensus 147 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 178 (288)
.++...+.++.+. -|.-+++...+.
T Consensus 81 -----~El~~~il~lA~~--v~adlii~pL~~ 105 (127)
T PF03686_consen 81 -----PELQPPILELAKK--VGADLIIRPLGG 105 (127)
T ss_dssp -----TTSHHHHHHHHHH--HT-EEEEE-BTT
T ss_pred -----hHHhHHHHHHHHH--hCCCEEEECCCC
Confidence 3334444444332 267777766553
|
; PDB: 2K4M_A. |
| >PRK12939 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.83 E-value=15 Score=30.82 Aligned_cols=74 Identities=11% Similarity=0.062 Sum_probs=48.5
Q ss_pred CCCEEEEECCcccHHHHHHHHc---cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-----------CC
Q 048309 69 KEHEVLEIGCGWGTFAIEVVRQ---TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-----------KA 134 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~~la~~---~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-----------~~ 134 (288)
+++++|=.|+ +|..+..+++. .++++++++.+++..+...+.++..+ .++.++.+|+.+.. .-
T Consensus 6 ~~~~vlItGa-~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 82 (250)
T PRK12939 6 AGKRALVTGA-ARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAG--GRAHAIAADLADPASVQRFFDAAAAAL 82 (250)
T ss_pred CCCEEEEeCC-CChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 4578887775 44444444432 47899999988877665555554433 36889999997643 01
Q ss_pred CCCCEEEEccc
Q 048309 135 KKYDRIISCEM 145 (288)
Q Consensus 135 ~~fD~I~~~~~ 145 (288)
+..|+++....
T Consensus 83 ~~id~vi~~ag 93 (250)
T PRK12939 83 GGLDGLVNNAG 93 (250)
T ss_pred CCCCEEEECCC
Confidence 47899887643
|
|
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=84.59 E-value=4.9 Score=34.11 Aligned_cols=65 Identities=20% Similarity=0.245 Sum_probs=45.7
Q ss_pred EEEEECCcc-cH-HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-----CCCCCCEEEEc
Q 048309 72 EVLEIGCGW-GT-FAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-----KAKKYDRIISC 143 (288)
Q Consensus 72 ~vLDiGcG~-G~-~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-----~~~~fD~I~~~ 143 (288)
+++=+|||. |. ++..|.+ .+..|+.+|.+++.++..... . .....+++|..+.. .-..+|++++.
T Consensus 2 ~iiIiG~G~vG~~va~~L~~-~g~~Vv~Id~d~~~~~~~~~~--~----~~~~~v~gd~t~~~~L~~agi~~aD~vva~ 73 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSE-EGHNVVLIDRDEERVEEFLAD--E----LDTHVVIGDATDEDVLEEAGIDDADAVVAA 73 (225)
T ss_pred EEEEECCcHHHHHHHHHHHh-CCCceEEEEcCHHHHHHHhhh--h----cceEEEEecCCCHHHHHhcCCCcCCEEEEe
Confidence 577899986 44 4455555 478999999999887663221 0 14789999998743 34689999875
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=84.45 E-value=8.6 Score=35.97 Aligned_cols=69 Identities=14% Similarity=0.172 Sum_probs=46.3
Q ss_pred CCCEEEEECCcc-cHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-----CCCCCCEEEE
Q 048309 69 KEHEVLEIGCGW-GTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-----KAKKYDRIIS 142 (288)
Q Consensus 69 ~~~~vLDiGcG~-G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-----~~~~fD~I~~ 142 (288)
...+++=+|+|. |..........+..|+.+|.+++.++..++.. ..+.++.+|..+.. .-..+|.|++
T Consensus 230 ~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~------~~~~~i~gd~~~~~~L~~~~~~~a~~vi~ 303 (453)
T PRK09496 230 PVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEEL------PNTLVLHGDGTDQELLEEEGIDEADAFIA 303 (453)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHC------CCCeEEECCCCCHHHHHhcCCccCCEEEE
Confidence 457888898865 33322222224789999999999887665542 24678999987643 3357888877
Q ss_pred c
Q 048309 143 C 143 (288)
Q Consensus 143 ~ 143 (288)
.
T Consensus 304 ~ 304 (453)
T PRK09496 304 L 304 (453)
T ss_pred C
Confidence 5
|
|
| >COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=84.36 E-value=3.6 Score=37.08 Aligned_cols=74 Identities=12% Similarity=0.103 Sum_probs=55.6
Q ss_pred CCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCC---CC-CCCEEEEccc
Q 048309 70 EHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPK---AK-KYDRIISCEM 145 (288)
Q Consensus 70 ~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~---~~-~fD~I~~~~~ 145 (288)
..+++|+-||.|.+..-+....-.-+.++|+++..++.-+.+... ..+...|+..+.. .. .+|+++....
T Consensus 3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~------~~~~~~di~~~~~~~~~~~~~DvligGpP 76 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH------GDIILGDIKELDGEALRKSDVDVLIGGPP 76 (328)
T ss_pred CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCC------CceeechHhhcChhhccccCCCEEEeCCC
Confidence 458999999999998777665223578999999988877766532 4677788876651 12 8999999888
Q ss_pred hhhh
Q 048309 146 MEAV 149 (288)
Q Consensus 146 l~~~ 149 (288)
++.+
T Consensus 77 CQ~F 80 (328)
T COG0270 77 CQDF 80 (328)
T ss_pred Ccch
Confidence 7766
|
|
| >TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial | Back alignment and domain information |
|---|
Probab=84.16 E-value=11 Score=38.08 Aligned_cols=99 Identities=15% Similarity=0.217 Sum_probs=65.4
Q ss_pred CEEEEECCcc-c-HHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHc-------C-CC--------CceEEEEcccCCCC
Q 048309 71 HEVLEIGCGW-G-TFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEA-------G-LQ--------DHIRLYLCDYRQLP 132 (288)
Q Consensus 71 ~~vLDiGcG~-G-~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~-------g-~~--------~~v~~~~~d~~~~~ 132 (288)
.+|-=||+|+ | .++..++. .|..|+.+|.+++.++.+.++++.. | ++ .++++. .|+..
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~-~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~-- 411 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVD-KGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPT-LDYSG-- 411 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHh-CCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCHHH--
Confidence 4788899997 3 34555555 4899999999999998877665431 1 11 122222 12221
Q ss_pred CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 133 KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 133 ~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
-...|+|+=. +.+.+ +...++++++-..++|+..|.-++.+
T Consensus 412 -~~~aDlViEA-v~E~l--~~K~~vf~~l~~~~~~~~ilasNTSs 452 (737)
T TIGR02441 412 -FKNADMVIEA-VFEDL--SLKHKVIKEVEAVVPPHCIIASNTSA 452 (737)
T ss_pred -hccCCeehhh-ccccH--HHHHHHHHHHHhhCCCCcEEEEcCCC
Confidence 2467777632 45555 66788999999999999887765544
|
Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). |
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=84.08 E-value=14 Score=34.10 Aligned_cols=96 Identities=8% Similarity=0.071 Sum_probs=62.8
Q ss_pred EEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCc-eEEEEcccCCCCCCCCCCEEEEccchhhhC
Q 048309 72 EVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDH-IRLYLCDYRQLPKAKKYDRIISCEMMEAVG 150 (288)
Q Consensus 72 ~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~-v~~~~~d~~~~~~~~~fD~I~~~~~l~~~~ 150 (288)
+|+-++=..|.++..++.+ +.. ...| |--.-...+++++.+|++.. ++.+ +..+. .++.+|+|+....= +
T Consensus 47 ~~~i~nd~fGal~~~l~~~-~~~-~~~d-s~~~~~~~~~n~~~n~~~~~~~~~~--~~~~~-~~~~~d~vl~~~PK---~ 117 (378)
T PRK15001 47 PVLILNDAFGALSCALAEH-KPY-SIGD-SYISELATRENLRLNGIDESSVKFL--DSTAD-YPQQPGVVLIKVPK---T 117 (378)
T ss_pred CEEEEcCchhHHHHHHHhC-CCC-eeeh-HHHHHHHHHHHHHHcCCCcccceee--ccccc-ccCCCCEEEEEeCC---C
Confidence 7999999999999999865 221 2233 33344556777888887533 3333 22222 33569998874321 1
Q ss_pred HhhHHHHHHHHhcccccCcEEEEEee
Q 048309 151 HEYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 151 ~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
....+..+..+...|.||+.+++...
T Consensus 118 ~~~l~~~l~~l~~~l~~~~~ii~g~~ 143 (378)
T PRK15001 118 LALLEQQLRALRKVVTSDTRIIAGAK 143 (378)
T ss_pred HHHHHHHHHHHHhhCCCCCEEEEEEe
Confidence 14567788899999999999876443
|
|
| >cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR) | Back alignment and domain information |
|---|
Probab=83.94 E-value=17 Score=31.63 Aligned_cols=93 Identities=15% Similarity=0.210 Sum_probs=60.6
Q ss_pred cCCCCCCEEEEECC--cccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-----CCCCC
Q 048309 65 ARVSKEHEVLEIGC--GWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-----KAKKY 137 (288)
Q Consensus 65 ~~~~~~~~vLDiGc--G~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-----~~~~f 137 (288)
....++.+||=.|+ +.|..+..+++..+.+|++++.+++..+.+++ .|.. .++. +-.++. ....+
T Consensus 138 ~~~~~g~~vlV~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~----~g~~---~~~~-~~~~~~~~i~~~~~~~ 209 (320)
T cd08243 138 LGLQPGDTLLIRGGTSSVGLAALKLAKALGATVTATTRSPERAALLKE----LGAD---EVVI-DDGAIAEQLRAAPGGF 209 (320)
T ss_pred cCCCCCCEEEEEcCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh----cCCc---EEEe-cCccHHHHHHHhCCCc
Confidence 34667889998885 46888888988888899999988877666533 3431 1211 111110 13568
Q ss_pred CEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 138 DRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 138 D~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
|+++.... ...+..+.+.|+++|+++..
T Consensus 210 d~vl~~~~---------~~~~~~~~~~l~~~g~~v~~ 237 (320)
T cd08243 210 DKVLELVG---------TATLKDSLRHLRPGGIVCMT 237 (320)
T ss_pred eEEEECCC---------hHHHHHHHHHhccCCEEEEE
Confidence 98885421 13456667899999998764
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >PRK06522 2-dehydropantoate 2-reductase; Reviewed | Back alignment and domain information |
|---|
Probab=83.83 E-value=13 Score=32.54 Aligned_cols=92 Identities=15% Similarity=0.210 Sum_probs=51.3
Q ss_pred EEEEECCcc-cH-HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCC---CceEEEEcccCCCCCCCCCCEEEEccch
Q 048309 72 EVLEIGCGW-GT-FAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQ---DHIRLYLCDYRQLPKAKKYDRIISCEMM 146 (288)
Q Consensus 72 ~vLDiGcG~-G~-~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~---~~v~~~~~d~~~~~~~~~fD~I~~~~~l 146 (288)
+|+=+|+|. |. ++..|++ .+.+|+.++-+++.++..++ .|+. ........-..+......+|+|+..---
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~-~g~~V~~~~r~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~d~vila~k~ 76 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQ-AGHDVTLVARRGAHLDALNE----NGLRLEDGEITVPVLAADDPAELGPQDLVILAVKA 76 (304)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCCeEEEEECChHHHHHHHH----cCCcccCCceeecccCCCChhHcCCCCEEEEeccc
Confidence 578899986 44 4455555 47899999987766554432 2331 1110000001111112678988875332
Q ss_pred hhhCHhhHHHHHHHHhcccccCcEEEE
Q 048309 147 EAVGHEYMEEYFGCCESLLAKDGLLVL 173 (288)
Q Consensus 147 ~~~~~~~~~~~l~~~~~~LkpgG~l~~ 173 (288)
.+...+++.+...+.++..+++
T Consensus 77 -----~~~~~~~~~l~~~l~~~~~iv~ 98 (304)
T PRK06522 77 -----YQLPAALPSLAPLLGPDTPVLF 98 (304)
T ss_pred -----ccHHHHHHHHhhhcCCCCEEEE
Confidence 2346677777777877766654
|
|
| >KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.55 E-value=0.7 Score=38.82 Aligned_cols=92 Identities=9% Similarity=0.134 Sum_probs=68.6
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC---
Q 048309 57 KHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP--- 132 (288)
Q Consensus 57 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~--- 132 (288)
....+++.+.+.++...+|.--|.|..+..+.+. +...+.++|-+|-+.+.|+...++. .++.+..+.+++..++
T Consensus 31 m~devl~~lspv~g~sf~DmTfGagGHt~~ilqk~se~k~yalDrDP~A~~La~~~s~el-~~~~l~a~Lg~Fs~~~~l~ 109 (303)
T KOG2782|consen 31 MLDEVLDILSPVRGRSFVDMTFGAGGHTSSILQKHSELKNYALDRDPVARKLAHFHSDEL-MHPTLKAVLGNFSYIKSLI 109 (303)
T ss_pred ehhhHHHHcCCCCCceEEEEeccCCcchHHHHHhCcHhhhhhhccChHHHHHHHHhhHhh-cchhHHHHHhhhHHHHHHH
Confidence 4577888888899999999999999888888776 6678899999999988888776432 1223444445544432
Q ss_pred -----CCCCCCEEEEccchhhh
Q 048309 133 -----KAKKYDRIISCEMMEAV 149 (288)
Q Consensus 133 -----~~~~fD~I~~~~~l~~~ 149 (288)
.+.++|.|++...+..+
T Consensus 110 ~~~gl~~~~vDGiLmDlGcSSM 131 (303)
T KOG2782|consen 110 ADTGLLDVGVDGILMDLGCSSM 131 (303)
T ss_pred HHhCCCcCCcceEEeecCcccc
Confidence 46789999987766655
|
|
| >PRK10458 DNA cytosine methylase; Provisional | Back alignment and domain information |
|---|
Probab=83.54 E-value=8.4 Score=36.52 Aligned_cols=98 Identities=10% Similarity=0.039 Sum_probs=59.0
Q ss_pred CHHHHHHHHHHHHHHHcC---CCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEE
Q 048309 49 DLKVAQMRKHSLLIEKAR---VSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYL 125 (288)
Q Consensus 49 ~l~~a~~~~~~~l~~~~~---~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~ 125 (288)
.+..+....+..++.... .....+++|+-||.|++..-+-......|.++|+++.+.+.-+.++... +....+.
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~~~~---p~~~~~~ 140 (467)
T PRK10458 64 RLSEAEFAHLQTLLPKPPAHHPHYAFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANWYCD---PATHRFN 140 (467)
T ss_pred CccHHHHHHHHHhcccCcccCcCCCceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHcCCC---Cccceec
Confidence 444444444444443322 1224589999999999998886653345778999998777666654211 1234455
Q ss_pred cccCCCCC------------------CCCCCEEEEccchhhh
Q 048309 126 CDYRQLPK------------------AKKYDRIISCEMMEAV 149 (288)
Q Consensus 126 ~d~~~~~~------------------~~~fD~I~~~~~l~~~ 149 (288)
+|+.++.. ...+|+++....+.-+
T Consensus 141 ~DI~~i~~~~~~~~~~~~~~~~~~~~~p~~DvL~gGpPCQ~F 182 (467)
T PRK10458 141 EDIRDITLSHKEGVSDEEAAEHIRQHIPDHDVLLAGFPCQPF 182 (467)
T ss_pred cChhhCccccccccchhhhhhhhhccCCCCCEEEEcCCCCcc
Confidence 66665431 1257988876655443
|
|
| >PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Probab=83.53 E-value=6.7 Score=38.11 Aligned_cols=81 Identities=17% Similarity=0.243 Sum_probs=50.7
Q ss_pred HcCCCCCCEEEEECCcccHHHHHHHHc---cCCEEEEEcCCHHHHHHHHHHHHHc-----CC--CCceEEEEcccCCCC-
Q 048309 64 KARVSKEHEVLEIGCGWGTFAIEVVRQ---TGCNYTGITLSAEQMKYAEMKVNEA-----GL--QDHIRLYLCDYRQLP- 132 (288)
Q Consensus 64 ~~~~~~~~~vLDiGcG~G~~~~~la~~---~~~~v~giD~s~~~~~~a~~~~~~~-----g~--~~~v~~~~~d~~~~~- 132 (288)
..+.+.+.+||-.|+. |.++..++++ .|.+|++++-+++..+...+.+... |. ..++.++.+|+.+..
T Consensus 74 ~~~~~~gKvVLVTGAT-GgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~es 152 (576)
T PLN03209 74 ELDTKDEDLAFVAGAT-GKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQ 152 (576)
T ss_pred ccccCCCCEEEEECCC-CHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHH
Confidence 4455678888877753 4444444332 4789999998887665444333221 11 135889999998754
Q ss_pred ---CCCCCCEEEEccc
Q 048309 133 ---KAKKYDRIISCEM 145 (288)
Q Consensus 133 ---~~~~fD~I~~~~~ 145 (288)
.-+..|+|+++..
T Consensus 153 I~~aLggiDiVVn~AG 168 (576)
T PLN03209 153 IGPALGNASVVICCIG 168 (576)
T ss_pred HHHHhcCCCEEEEccc
Confidence 2357899887643
|
|
| >PRK07814 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.50 E-value=14 Score=31.54 Aligned_cols=74 Identities=9% Similarity=0.125 Sum_probs=48.6
Q ss_pred CCCEEEEECCcccHHHHHHHHc---cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-C----------C
Q 048309 69 KEHEVLEIGCGWGTFAIEVVRQ---TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-K----------A 134 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~~la~~---~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~----------~ 134 (288)
+++++|=.|+ +|.++..+++. .+++|++++.+++..+...+.+...+ .++.++..|+.+.. . -
T Consensus 9 ~~~~vlItGa-sggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 85 (263)
T PRK07814 9 DDQVAVVTGA-GRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAG--RRAHVVAADLAHPEATAGLAGQAVEAF 85 (263)
T ss_pred CCCEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 4678888885 44444443332 47899999998877666555554433 36788889987643 1 1
Q ss_pred CCCCEEEEccc
Q 048309 135 KKYDRIISCEM 145 (288)
Q Consensus 135 ~~fD~I~~~~~ 145 (288)
+..|+|+....
T Consensus 86 ~~id~vi~~Ag 96 (263)
T PRK07814 86 GRLDIVVNNVG 96 (263)
T ss_pred CCCCEEEECCC
Confidence 47899987543
|
|
| >PRK08213 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.45 E-value=8.3 Score=32.86 Aligned_cols=74 Identities=12% Similarity=0.115 Sum_probs=50.7
Q ss_pred CCCEEEEECCcccHHHHHHHHc---cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-----------CC
Q 048309 69 KEHEVLEIGCGWGTFAIEVVRQ---TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-----------KA 134 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~~la~~---~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-----------~~ 134 (288)
+++++|=.|+ +|..+..++++ .+++|+.++-++...+.....+...+ .++.++.+|+.+.. ..
T Consensus 11 ~~k~ilItGa-~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~--~~~~~~~~Dl~d~~~i~~~~~~~~~~~ 87 (259)
T PRK08213 11 SGKTALVTGG-SRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALG--IDALWIAADVADEADIERLAEETLERF 87 (259)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 4678888884 45555555443 47899999998877766665555443 36788999998743 12
Q ss_pred CCCCEEEEccc
Q 048309 135 KKYDRIISCEM 145 (288)
Q Consensus 135 ~~fD~I~~~~~ 145 (288)
+..|+|+.+..
T Consensus 88 ~~id~vi~~ag 98 (259)
T PRK08213 88 GHVDILVNNAG 98 (259)
T ss_pred CCCCEEEECCC
Confidence 46899988754
|
|
| >PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1 | Back alignment and domain information |
|---|
Probab=83.41 E-value=4.7 Score=34.94 Aligned_cols=73 Identities=14% Similarity=0.169 Sum_probs=43.0
Q ss_pred HHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCEEEEccchhhhCHhhHHHHHHHHh
Q 048309 84 AIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMMEAVGHEYMEEYFGCCE 162 (288)
Q Consensus 84 ~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~ 162 (288)
+..|.+. +..+|+|+|.++..++.+.+. |+. .-...+...+ ..+|+|+..-.+.. ...+++++.
T Consensus 2 A~aL~~~g~~~~v~g~d~~~~~~~~a~~~----g~~---~~~~~~~~~~---~~~DlvvlavP~~~-----~~~~l~~~~ 66 (258)
T PF02153_consen 2 ALALRKAGPDVEVYGYDRDPETLEAALEL----GII---DEASTDIEAV---EDADLVVLAVPVSA-----IEDVLEEIA 66 (258)
T ss_dssp HHHHHHTTTTSEEEEE-SSHHHHHHHHHT----TSS---SEEESHHHHG---GCCSEEEE-S-HHH-----HHHHHHHHH
T ss_pred hHHHHhCCCCeEEEEEeCCHHHHHHHHHC----CCe---eeccCCHhHh---cCCCEEEEcCCHHH-----HHHHHHHhh
Confidence 4455555 458999999999988777543 442 2222221111 45799998655544 477777787
Q ss_pred cccccCcEE
Q 048309 163 SLLAKDGLL 171 (288)
Q Consensus 163 ~~LkpgG~l 171 (288)
..+++|+.+
T Consensus 67 ~~~~~~~iv 75 (258)
T PF02153_consen 67 PYLKPGAIV 75 (258)
T ss_dssp CGS-TTSEE
T ss_pred hhcCCCcEE
Confidence 877777643
|
3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D. |
| >TIGR02437 FadB fatty oxidation complex, alpha subunit FadB | Back alignment and domain information |
|---|
Probab=83.39 E-value=8.5 Score=38.62 Aligned_cols=99 Identities=14% Similarity=0.232 Sum_probs=65.2
Q ss_pred CEEEEECCcc-c-HHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHc-------C-CC--------CceEEEEcccCCCC
Q 048309 71 HEVLEIGCGW-G-TFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEA-------G-LQ--------DHIRLYLCDYRQLP 132 (288)
Q Consensus 71 ~~vLDiGcG~-G-~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~-------g-~~--------~~v~~~~~d~~~~~ 132 (288)
.+|.=||+|+ | .++..++. .|..|+.+|.+++.++.+++++... | ++ .++++. .|. .
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~-~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~---~ 388 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSAS-KGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPT-LSY---A 388 (714)
T ss_pred ceEEEECCchHHHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCH---H
Confidence 4688899997 3 44555555 4899999999999998877655421 1 10 122222 122 1
Q ss_pred CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 133 KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 133 ~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
.-...|+|+=. +.+.+ +...++++++-++++|+..|.-++.+
T Consensus 389 ~~~~aDlViEa-v~E~l--~~K~~vf~~l~~~~~~~~ilasnTS~ 430 (714)
T TIGR02437 389 GFDNVDIVVEA-VVENP--KVKAAVLAEVEQHVREDAILASNTST 430 (714)
T ss_pred HhcCCCEEEEc-CcccH--HHHHHHHHHHHhhCCCCcEEEECCCC
Confidence 12568888743 55666 66788999999999999877665444
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399. |
| >PLN02702 L-idonate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=83.13 E-value=20 Score=32.34 Aligned_cols=101 Identities=17% Similarity=0.234 Sum_probs=60.8
Q ss_pred HHcCCCCCCEEEEECCcc-cHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCceEEE--EcccCC----C--C
Q 048309 63 EKARVSKEHEVLEIGCGW-GTFAIEVVRQTGC-NYTGITLSAEQMKYAEMKVNEAGLQDHIRLY--LCDYRQ----L--P 132 (288)
Q Consensus 63 ~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~--~~d~~~----~--~ 132 (288)
......++.+||-+|+|. |..+..+++..+. .++++|.++...+.+++ .|.+..+.+. ..+... + .
T Consensus 175 ~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~ 250 (364)
T PLN02702 175 RRANIGPETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSVAKQ----LGADEIVLVSTNIEDVESEVEEIQKA 250 (364)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hCCCEEEecCcccccHHHHHHHHhhh
Confidence 445667888999888764 7777888877555 58899988777665544 2332111110 011111 1 1
Q ss_pred CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 133 KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 133 ~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
..+.+|+|+-... + ...+....+.|+++|+++...
T Consensus 251 ~~~~~d~vid~~g--~------~~~~~~~~~~l~~~G~~v~~g 285 (364)
T PLN02702 251 MGGGIDVSFDCVG--F------NKTMSTALEATRAGGKVCLVG 285 (364)
T ss_pred cCCCCCEEEECCC--C------HHHHHHHHHHHhcCCEEEEEc
Confidence 1346898886411 0 234666778999999987643
|
|
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=83.12 E-value=2 Score=34.91 Aligned_cols=90 Identities=17% Similarity=0.112 Sum_probs=52.7
Q ss_pred CCCEEEEECCcc-cHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCEEEEccchh
Q 048309 69 KEHEVLEIGCGW-GTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMME 147 (288)
Q Consensus 69 ~~~~vLDiGcG~-G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~~~~~l~ 147 (288)
.+++|.=+|+|. |.-....++..+.+|+++|.+...... ....+ + ...++.++- ...|+|+....+.
T Consensus 35 ~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~----~~~~~----~--~~~~l~ell--~~aDiv~~~~plt 102 (178)
T PF02826_consen 35 RGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEG----ADEFG----V--EYVSLDELL--AQADIVSLHLPLT 102 (178)
T ss_dssp TTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHH----HHHTT----E--EESSHHHHH--HH-SEEEE-SSSS
T ss_pred CCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhh----ccccc----c--eeeehhhhc--chhhhhhhhhccc
Confidence 588999999986 776666666689999999998876541 11111 2 222333332 4688888865542
Q ss_pred hhCHhhHHHHHHHHhcccccCcEEEE
Q 048309 148 AVGHEYMEEYFGCCESLLAKDGLLVL 173 (288)
Q Consensus 148 ~~~~~~~~~~l~~~~~~LkpgG~l~~ 173 (288)
. +...-+=++....+|+|.+|+-
T Consensus 103 ~---~T~~li~~~~l~~mk~ga~lvN 125 (178)
T PF02826_consen 103 P---ETRGLINAEFLAKMKPGAVLVN 125 (178)
T ss_dssp T---TTTTSBSHHHHHTSTTTEEEEE
T ss_pred c---ccceeeeeeeeeccccceEEEe
Confidence 1 1111122233478888887764
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >cd05286 QOR2 Quinone oxidoreductase (QOR) | Back alignment and domain information |
|---|
Probab=83.06 E-value=2.8 Score=36.40 Aligned_cols=96 Identities=19% Similarity=0.164 Sum_probs=61.1
Q ss_pred HcCCCCCCEEEEECC-c-ccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCC-------CCCC
Q 048309 64 KARVSKEHEVLEIGC-G-WGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQ-------LPKA 134 (288)
Q Consensus 64 ~~~~~~~~~vLDiGc-G-~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~-------~~~~ 134 (288)
.....++.+||=.|+ | .|..+..+++..+..+++++.+++..+.+++ .|.. .++..+-.. ....
T Consensus 131 ~~~~~~g~~vlI~g~~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~~~ 203 (320)
T cd05286 131 TYPVKPGDTVLVHAAAGGVGLLLTQWAKALGATVIGTVSSEEKAELARA----AGAD---HVINYRDEDFVERVREITGG 203 (320)
T ss_pred hcCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH----CCCC---EEEeCCchhHHHHHHHHcCC
Confidence 345668889998984 3 5778888888778899999988887766643 2331 222221111 1123
Q ss_pred CCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 135 KKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 135 ~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
..+|+++.... ...+..+.+.|+++|.++...
T Consensus 204 ~~~d~vl~~~~---------~~~~~~~~~~l~~~g~~v~~g 235 (320)
T cd05286 204 RGVDVVYDGVG---------KDTFEGSLDSLRPRGTLVSFG 235 (320)
T ss_pred CCeeEEEECCC---------cHhHHHHHHhhccCcEEEEEe
Confidence 46899886422 123445668899999988643
|
Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone |
| >cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=82.84 E-value=15 Score=31.94 Aligned_cols=94 Identities=18% Similarity=0.198 Sum_probs=60.1
Q ss_pred HcCCCCCCEEEEECC--cccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCEEE
Q 048309 64 KARVSKEHEVLEIGC--GWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRII 141 (288)
Q Consensus 64 ~~~~~~~~~vLDiGc--G~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~ 141 (288)
.+...++.+|+=.|+ +.|..+..+++..+.++++++.+++..+.+++ .|.+ ..+. +..++. ++.+|+++
T Consensus 127 ~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~----~g~~---~~~~-~~~~~~-~~~~d~vl 197 (305)
T cd08270 127 RGGPLLGRRVLVTGASGGVGRFAVQLAALAGAHVVAVVGSPARAEGLRE----LGAA---EVVV-GGSELS-GAPVDLVV 197 (305)
T ss_pred HhCCCCCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCCc---EEEe-cccccc-CCCceEEE
Confidence 344445889998887 35777888887778899999988877766654 2332 1111 111222 24689888
Q ss_pred EccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 142 SCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 142 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
..-. ...+....+.|+++|+++...
T Consensus 198 ~~~g---------~~~~~~~~~~l~~~G~~v~~g 222 (305)
T cd08270 198 DSVG---------GPQLARALELLAPGGTVVSVG 222 (305)
T ss_pred ECCC---------cHHHHHHHHHhcCCCEEEEEe
Confidence 6421 123566678999999988653
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh |
| >PRK05708 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=82.68 E-value=11 Score=33.38 Aligned_cols=95 Identities=19% Similarity=0.183 Sum_probs=53.9
Q ss_pred CEEEEECCcc-cH-HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCC----CceEEEEcccCCCCCCCCCCEEEEcc
Q 048309 71 HEVLEIGCGW-GT-FAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQ----DHIRLYLCDYRQLPKAKKYDRIISCE 144 (288)
Q Consensus 71 ~~vLDiGcG~-G~-~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~----~~v~~~~~d~~~~~~~~~fD~I~~~~ 144 (288)
.+|+=+|+|. |. ++..|++ .+..|+.++-+++.++..++ +.|+. ................+.+|+|+..-
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~-~G~~V~lv~r~~~~~~~i~~---~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv~v 78 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLAR-AGLPVRLILRDRQRLAAYQQ---AGGLTLVEQGQASLYAIPAETADAAEPIHRLLLAC 78 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHh-CCCCeEEEEechHHHHHHhh---cCCeEEeeCCcceeeccCCCCcccccccCEEEEEC
Confidence 4788999996 44 5666665 47899999987655544432 12220 00011111111111235799887653
Q ss_pred chhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 145 MMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 145 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
=-+ +..+.++.+...+.++..++..
T Consensus 79 K~~-----~~~~al~~l~~~l~~~t~vv~l 103 (305)
T PRK05708 79 KAY-----DAEPAVASLAHRLAPGAELLLL 103 (305)
T ss_pred CHH-----hHHHHHHHHHhhCCCCCEEEEE
Confidence 222 2356777888888888866553
|
|
| >PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=82.68 E-value=12 Score=37.64 Aligned_cols=100 Identities=19% Similarity=0.167 Sum_probs=65.5
Q ss_pred CEEEEECCcc-c-HHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHc-------C-CC--------CceEEEEcccCCCC
Q 048309 71 HEVLEIGCGW-G-TFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEA-------G-LQ--------DHIRLYLCDYRQLP 132 (288)
Q Consensus 71 ~~vLDiGcG~-G-~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~-------g-~~--------~~v~~~~~d~~~~~ 132 (288)
.+|.=||+|+ | .++..++...|..|+.+|.+++.++.+..+++.. + +. .++++. .|. .
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~~---~ 385 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGT-TDY---R 385 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEe-CCh---H
Confidence 5788999998 4 3445555235899999999999988876655321 1 10 123333 122 2
Q ss_pred CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 133 KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 133 ~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
.-...|+|+=. +.+.+ +-..++++++-+.++|+..|.-++.+
T Consensus 386 ~~~~aDlViEa-v~E~~--~~K~~v~~~le~~~~~~~ilasnTS~ 427 (708)
T PRK11154 386 GFKHADVVIEA-VFEDL--ALKQQMVAEVEQNCAPHTIFASNTSS 427 (708)
T ss_pred HhccCCEEeec-ccccH--HHHHHHHHHHHhhCCCCcEEEECCCC
Confidence 12468887743 45555 66788999999999999877765544
|
|
| >cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH) | Back alignment and domain information |
|---|
Probab=82.67 E-value=6.1 Score=36.03 Aligned_cols=107 Identities=21% Similarity=0.130 Sum_probs=63.5
Q ss_pred HHcCCCCCCEEEEECCcc-cHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEccc----CCCCCCCC
Q 048309 63 EKARVSKEHEVLEIGCGW-GTFAIEVVRQTGC-NYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDY----RQLPKAKK 136 (288)
Q Consensus 63 ~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~----~~~~~~~~ 136 (288)
......++.+||-.|+|. |..+..+++..+. .++++|.+++..+.+++. |. .-+.....+. ..+ ....
T Consensus 170 ~~~~~~~g~~vlI~g~g~vg~~~~~~a~~~G~~~vi~~~~~~~~~~~~~~~----g~-~~v~~~~~~~~~~i~~~-~~~~ 243 (375)
T cd08282 170 ELAGVQPGDTVAVFGAGPVGLMAAYSAILRGASRVYVVDHVPERLDLAESI----GA-IPIDFSDGDPVEQILGL-EPGG 243 (375)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc----CC-eEeccCcccHHHHHHHh-hCCC
Confidence 455667888888888874 7778888877665 798999988777666542 31 0010001111 011 1246
Q ss_pred CCEEEEccchhh---hCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 137 YDRIISCEMMEA---VGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 137 fD~I~~~~~l~~---~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
+|+++-...-.. .........+.++.+.|+++|.++...
T Consensus 244 ~d~v~d~~g~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~g 285 (375)
T cd08282 244 VDRAVDCVGYEARDRGGEAQPNLVLNQLIRVTRPGGGIGIVG 285 (375)
T ss_pred CCEEEECCCCcccccccccchHHHHHHHHHHhhcCcEEEEEe
Confidence 898886432110 000122345777889999999987643
|
Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo |
| >COG0863 DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=82.22 E-value=7.2 Score=34.18 Aligned_cols=58 Identities=24% Similarity=0.245 Sum_probs=47.6
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHc
Q 048309 56 RKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEA 115 (288)
Q Consensus 56 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~ 115 (288)
....+++.. ...++..|||.=+|+|........ .+..++|+|+++..++.+.+++...
T Consensus 210 ~l~~r~i~~-~s~~~diVlDpf~GsGtt~~aa~~-~~r~~ig~e~~~~y~~~~~~r~~~~ 267 (302)
T COG0863 210 ALIERLIRD-YSFPGDIVLDPFAGSGTTGIAAKN-LGRRFIGIEINPEYVEVALKRLQEG 267 (302)
T ss_pred HHHHHHHHh-cCCCCCEEeecCCCCChHHHHHHH-cCCceEEEecCHHHHHHHHHHHHhh
Confidence 455566666 556889999999999999887665 4789999999999999999998753
|
|
| >KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only] | Back alignment and domain information |
|---|
Probab=82.03 E-value=5.5 Score=34.55 Aligned_cols=100 Identities=22% Similarity=0.261 Sum_probs=67.7
Q ss_pred HHHcCCCCCCEEEEE--CCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCC----CCCCC
Q 048309 62 IEKARVSKEHEVLEI--GCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQ----LPKAK 135 (288)
Q Consensus 62 ~~~~~~~~~~~vLDi--GcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~----~~~~~ 135 (288)
.+....++|.+||-- ..|.|.+..++++..+.++++.-.+.+-.++|+++ |...-|.+...|+.+ +....
T Consensus 139 ~e~y~vkpGhtVlvhaAAGGVGlll~Ql~ra~~a~tI~~asTaeK~~~aken----G~~h~I~y~~eD~v~~V~kiTngK 214 (336)
T KOG1197|consen 139 FEAYNVKPGHTVLVHAAAGGVGLLLCQLLRAVGAHTIATASTAEKHEIAKEN----GAEHPIDYSTEDYVDEVKKITNGK 214 (336)
T ss_pred HHhcCCCCCCEEEEEeccccHHHHHHHHHHhcCcEEEEEeccHHHHHHHHhc----CCcceeeccchhHHHHHHhccCCC
Confidence 345578899888743 35678888898887788888888888777777665 443335555555543 23456
Q ss_pred CCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 136 KYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 136 ~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
..|+++-.-. ..-++.-...|||+|.++-.
T Consensus 215 GVd~vyDsvG---------~dt~~~sl~~Lk~~G~mVSf 244 (336)
T KOG1197|consen 215 GVDAVYDSVG---------KDTFAKSLAALKPMGKMVSF 244 (336)
T ss_pred Cceeeecccc---------chhhHHHHHHhccCceEEEe
Confidence 7888875422 22334455899999998864
|
|
| >cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=81.98 E-value=30 Score=30.01 Aligned_cols=97 Identities=23% Similarity=0.285 Sum_probs=54.7
Q ss_pred CCCCCEEEEECC--cccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEccc-CCCCCCCCCCEEEEc
Q 048309 67 VSKEHEVLEIGC--GWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDY-RQLPKAKKYDRIISC 143 (288)
Q Consensus 67 ~~~~~~vLDiGc--G~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~-~~~~~~~~fD~I~~~ 143 (288)
..++.+|+-.|+ +.|..+..+++..+.++++++.+ ...+.++ ..|...-+.....+. ........+|+++..
T Consensus 141 ~~~g~~vli~g~~g~~g~~~~~la~~~g~~v~~~~~~-~~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~d~vi~~ 215 (319)
T cd08267 141 VKPGQRVLINGASGGVGTFAVQIAKALGAHVTGVCST-RNAELVR----SLGADEVIDYTTEDFVALTAGGEKYDVIFDA 215 (319)
T ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCH-HHHHHHH----HcCCCEeecCCCCCcchhccCCCCCcEEEEC
Confidence 668899999997 35788888888778899998843 4444442 234310011111111 112244569999864
Q ss_pred cchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 144 EMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 144 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
..- ........+. .|+++|+++...
T Consensus 216 ~~~------~~~~~~~~~~-~l~~~g~~i~~g 240 (319)
T cd08267 216 VGN------SPFSLYRASL-ALKPGGRYVSVG 240 (319)
T ss_pred CCc------hHHHHHHhhh-ccCCCCEEEEec
Confidence 221 1112222222 399999998753
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh |
| >PLN02545 3-hydroxybutyryl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=81.86 E-value=30 Score=30.40 Aligned_cols=95 Identities=16% Similarity=0.219 Sum_probs=56.9
Q ss_pred CEEEEECCcc-c-HHHHHHHHccCCEEEEEcCCHHHHHHHHHHHH-------HcCCC---------CceEEEEcccCCCC
Q 048309 71 HEVLEIGCGW-G-TFAIEVVRQTGCNYTGITLSAEQMKYAEMKVN-------EAGLQ---------DHIRLYLCDYRQLP 132 (288)
Q Consensus 71 ~~vLDiGcG~-G-~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~-------~~g~~---------~~v~~~~~d~~~~~ 132 (288)
.+|.=||+|. | .++..++. .+.+|+++|.+++.++.+++.++ +.|.- .++. ...+..
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~-~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~--- 79 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAA-AGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIR-CTTNLE--- 79 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceE-eeCCHH---
Confidence 4677899985 4 44555555 47899999999999876655432 12210 0111 112221
Q ss_pred CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEE
Q 048309 133 KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVL 173 (288)
Q Consensus 133 ~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~ 173 (288)
.-...|+|+..- .+- ++....+++++...++|+..++.
T Consensus 80 ~~~~aD~Vieav-~e~--~~~k~~v~~~l~~~~~~~~il~s 117 (295)
T PLN02545 80 ELRDADFIIEAI-VES--EDLKKKLFSELDRICKPSAILAS 117 (295)
T ss_pred HhCCCCEEEEcC-ccC--HHHHHHHHHHHHhhCCCCcEEEE
Confidence 124678888642 121 24567788888888888876654
|
|
| >PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=81.58 E-value=13 Score=37.46 Aligned_cols=99 Identities=16% Similarity=0.270 Sum_probs=64.4
Q ss_pred CEEEEECCcc-c-HHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHH-------cC-CC--------CceEEEEcccCCCC
Q 048309 71 HEVLEIGCGW-G-TFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNE-------AG-LQ--------DHIRLYLCDYRQLP 132 (288)
Q Consensus 71 ~~vLDiGcG~-G-~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~-------~g-~~--------~~v~~~~~d~~~~~ 132 (288)
.+|.=||+|+ | ..+..++. .|..|+.+|.+++.++.+..+++. .| ++ .++++. .|...
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~-~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~-- 389 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSAS-KGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPT-LDYAG-- 389 (715)
T ss_pred ceEEEECCchhHHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCHHH--
Confidence 4788999998 4 34455555 489999999999999877665432 11 10 123322 22222
Q ss_pred CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 133 KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 133 ~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
-...|+|+=. +.+.+ +...++++++-..++|+..|.-.+.+
T Consensus 390 -~~~aDlViEa-v~E~l--~~K~~vf~~l~~~~~~~~ilasNTSs 430 (715)
T PRK11730 390 -FERVDVVVEA-VVENP--KVKAAVLAEVEQKVREDTILASNTST 430 (715)
T ss_pred -hcCCCEEEec-ccCcH--HHHHHHHHHHHhhCCCCcEEEEcCCC
Confidence 2567877743 45555 66788999999999988777665444
|
|
| >PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional | Back alignment and domain information |
|---|
Probab=81.55 E-value=19 Score=31.89 Aligned_cols=98 Identities=11% Similarity=0.166 Sum_probs=61.3
Q ss_pred HHcCCCCCCEEEEECCcc-cHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEccc-CC----CC-CC
Q 048309 63 EKARVSKEHEVLEIGCGW-GTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDY-RQ----LP-KA 134 (288)
Q Consensus 63 ~~~~~~~~~~vLDiGcG~-G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~-~~----~~-~~ 134 (288)
......++.+||=.|+|. |..+..+++. .+.++++++.+++..+.+++ .|.. .++...- .+ +. ..
T Consensus 156 ~~~~~~~g~~vlV~g~g~vG~~~~~la~~~~g~~v~~~~~~~~~~~~~~~----~g~~---~v~~~~~~~~~~~~v~~~~ 228 (338)
T PRK09422 156 KVSGIKPGQWIAIYGAGGLGNLALQYAKNVFNAKVIAVDINDDKLALAKE----VGAD---LTINSKRVEDVAKIIQEKT 228 (338)
T ss_pred HhcCCCCCCEEEEECCcHHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHH----cCCc---EEecccccccHHHHHHHhc
Confidence 445677889999899764 7788888886 48899999999988877743 2331 1222111 11 11 11
Q ss_pred CCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 135 KKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 135 ~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
+.+|.++... .+ ...+..+.+.|+++|.++...
T Consensus 229 ~~~d~vi~~~----~~----~~~~~~~~~~l~~~G~~v~~g 261 (338)
T PRK09422 229 GGAHAAVVTA----VA----KAAFNQAVDAVRAGGRVVAVG 261 (338)
T ss_pred CCCcEEEEeC----CC----HHHHHHHHHhccCCCEEEEEe
Confidence 2577444221 11 234667778999999988743
|
|
| >cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=81.51 E-value=4.5 Score=36.06 Aligned_cols=95 Identities=17% Similarity=0.198 Sum_probs=61.2
Q ss_pred cCCCCCCEEEEECCc--ccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEc---ccC----CCCCCC
Q 048309 65 ARVSKEHEVLEIGCG--WGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLC---DYR----QLPKAK 135 (288)
Q Consensus 65 ~~~~~~~~vLDiGcG--~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~---d~~----~~~~~~ 135 (288)
+...++.+||=.|+| .|..+..+++..+.+++.++.+++..+.+++ .|.. .++.. +.. ......
T Consensus 161 ~~~~~~~~vlV~g~~~~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~----~g~~---~v~~~~~~~~~~~~~~~~~~~ 233 (341)
T cd08297 161 AGLKPGDWVVISGAGGGLGHLGVQYAKAMGLRVIAIDVGDEKLELAKE----LGAD---AFVDFKKSDDVEAVKELTGGG 233 (341)
T ss_pred cCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH----cCCc---EEEcCCCccHHHHHHHHhcCC
Confidence 467788899988875 6888888888878899999988876665532 2321 12211 111 111245
Q ss_pred CCCEEEE-ccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 136 KYDRIIS-CEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 136 ~fD~I~~-~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
.+|+++. ... ...+..+.+.|+++|+++...
T Consensus 234 ~vd~vl~~~~~---------~~~~~~~~~~l~~~g~~v~~g 265 (341)
T cd08297 234 GAHAVVVTAVS---------AAAYEQALDYLRPGGTLVCVG 265 (341)
T ss_pred CCCEEEEcCCc---------hHHHHHHHHHhhcCCEEEEec
Confidence 6999985 321 223455668889999998753
|
These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha |
| >PLN02989 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=81.44 E-value=7.7 Score=34.42 Aligned_cols=76 Identities=13% Similarity=0.171 Sum_probs=44.9
Q ss_pred CCCEEEEECCcccHHHHHHHHc---cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC----CCCCCCEEE
Q 048309 69 KEHEVLEIGCGWGTFAIEVVRQ---TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP----KAKKYDRII 141 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~~la~~---~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~----~~~~fD~I~ 141 (288)
.+++||-.| |+|..+..+++. .+++|+++..++.............+...+++++.+|+.+.. .-...|+|+
T Consensus 4 ~~k~vlVtG-~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi 82 (325)
T PLN02989 4 GGKVVCVTG-ASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETVF 82 (325)
T ss_pred CCCEEEEEC-CchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEEE
Confidence 467888777 455555555443 477888776555433322222222222246889999998754 123589888
Q ss_pred Eccc
Q 048309 142 SCEM 145 (288)
Q Consensus 142 ~~~~ 145 (288)
....
T Consensus 83 h~A~ 86 (325)
T PLN02989 83 HTAS 86 (325)
T ss_pred EeCC
Confidence 7654
|
|
| >cd05288 PGDH Prostaglandin dehydrogenases | Back alignment and domain information |
|---|
Probab=81.34 E-value=28 Score=30.65 Aligned_cols=95 Identities=17% Similarity=0.203 Sum_probs=60.0
Q ss_pred cCCCCCCEEEEECC--cccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCC----C--CCCC
Q 048309 65 ARVSKEHEVLEIGC--GWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQL----P--KAKK 136 (288)
Q Consensus 65 ~~~~~~~~vLDiGc--G~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~----~--~~~~ 136 (288)
....++.+||=.|+ +.|..+..+++..+.++++++.++...+.+++.+ |.. .++..+-.+. . ..+.
T Consensus 141 ~~~~~~~~vlI~g~~g~ig~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~~---g~~---~~~~~~~~~~~~~v~~~~~~~ 214 (329)
T cd05288 141 GKPKPGETVVVSAAAGAVGSVVGQIAKLLGARVVGIAGSDEKCRWLVEEL---GFD---AAINYKTPDLAEALKEAAPDG 214 (329)
T ss_pred cCCCCCCEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhhc---CCc---eEEecCChhHHHHHHHhccCC
Confidence 34567889998883 3588888888887889999998887776665422 321 2221111111 1 1256
Q ss_pred CCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 137 YDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 137 fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
+|+++.... ...+....+.|+++|+++..
T Consensus 215 ~d~vi~~~g---------~~~~~~~~~~l~~~G~~v~~ 243 (329)
T cd05288 215 IDVYFDNVG---------GEILDAALTLLNKGGRIALC 243 (329)
T ss_pred ceEEEEcch---------HHHHHHHHHhcCCCceEEEE
Confidence 898885321 12566667889999998764
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino |
| >PRK09291 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.12 E-value=13 Score=31.47 Aligned_cols=72 Identities=21% Similarity=0.198 Sum_probs=47.0
Q ss_pred CEEEEECCcccHHHHHHHHc---cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-----CCCCCCEEEE
Q 048309 71 HEVLEIGCGWGTFAIEVVRQ---TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-----KAKKYDRIIS 142 (288)
Q Consensus 71 ~~vLDiGcG~G~~~~~la~~---~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-----~~~~fD~I~~ 142 (288)
+++|-.|++. .++..+++. .+++|++++-++...+.........+. ++.++.+|+.+.. .....|+++.
T Consensus 3 ~~vlVtGasg-~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~id~vi~ 79 (257)
T PRK09291 3 KTILITGAGS-GFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRGL--ALRVEKLDLTDAIDRAQAAEWDVDVLLN 79 (257)
T ss_pred CEEEEeCCCC-HHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--cceEEEeeCCCHHHHHHHhcCCCCEEEE
Confidence 4688777643 333333332 478999998887766655555554443 5888999987753 2347999988
Q ss_pred ccc
Q 048309 143 CEM 145 (288)
Q Consensus 143 ~~~ 145 (288)
+..
T Consensus 80 ~ag 82 (257)
T PRK09291 80 NAG 82 (257)
T ss_pred CCC
Confidence 643
|
|
| >PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1 | Back alignment and domain information |
|---|
Probab=80.90 E-value=15 Score=28.51 Aligned_cols=87 Identities=22% Similarity=0.299 Sum_probs=51.7
Q ss_pred EEEECCcc-cHH-HHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcc----------cCCCC-CCCCCCE
Q 048309 73 VLEIGCGW-GTF-AIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCD----------YRQLP-KAKKYDR 139 (288)
Q Consensus 73 vLDiGcG~-G~~-~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d----------~~~~~-~~~~fD~ 139 (288)
|+=+|+|. |.+ +..|++ .+.+|+.++-.+ ..+..+ +.| +++...+ ..... ....+|+
T Consensus 1 I~I~G~GaiG~~~a~~L~~-~g~~V~l~~r~~-~~~~~~----~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 70 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQ-AGHDVTLVSRSP-RLEAIK----EQG----LTITGPDGDETVQPPIVISAPSADAGPYDL 70 (151)
T ss_dssp EEEESTSHHHHHHHHHHHH-TTCEEEEEESHH-HHHHHH----HHC----EEEEETTEEEEEEEEEEESSHGHHHSTESE
T ss_pred CEEECcCHHHHHHHHHHHH-CCCceEEEEccc-cHHhhh----hee----EEEEecccceecccccccCcchhccCCCcE
Confidence 45578885 554 344444 688999999766 444422 223 2222222 11111 3468999
Q ss_pred EEEccchhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 140 IISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 140 I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
|+..-=- .+..+.++.+...+.++..+++.
T Consensus 71 viv~vKa-----~~~~~~l~~l~~~~~~~t~iv~~ 100 (151)
T PF02558_consen 71 VIVAVKA-----YQLEQALQSLKPYLDPNTTIVSL 100 (151)
T ss_dssp EEE-SSG-----GGHHHHHHHHCTGEETTEEEEEE
T ss_pred EEEEecc-----cchHHHHHHHhhccCCCcEEEEE
Confidence 9875322 34577888899999999777763
|
1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B .... |
| >TIGR00497 hsdM type I restriction system adenine methylase (hsdM) | Back alignment and domain information |
|---|
Probab=80.68 E-value=11 Score=36.08 Aligned_cols=105 Identities=11% Similarity=0.243 Sum_probs=66.8
Q ss_pred CCCEEEEECCcccHHHHHHHHc-----cCCEEEEEcCCHHHHHHHHHHHHHcCCCC-ceEEEEcccCCCC---CCCCCCE
Q 048309 69 KEHEVLEIGCGWGTFAIEVVRQ-----TGCNYTGITLSAEQMKYAEMKVNEAGLQD-HIRLYLCDYRQLP---KAKKYDR 139 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~~la~~-----~~~~v~giD~s~~~~~~a~~~~~~~g~~~-~v~~~~~d~~~~~---~~~~fD~ 139 (288)
++..+.|..||+|.+.....+. ....++|.+..+.+...++.+..-.+... ......+|...-+ ....||.
T Consensus 217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~~~dtl~~~d~~~~~~~D~ 296 (501)
T TIGR00497 217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNIINADTLTTKEWENENGFEV 296 (501)
T ss_pred CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccCcccCCcCCCccccccccCCE
Confidence 5578999999999988765432 12469999999999999998865555421 2333344443322 2356898
Q ss_pred EEEccchhh--------------------h-CH--hhHHHHHHHHhcccccCcEEEE
Q 048309 140 IISCEMMEA--------------------V-GH--EYMEEYFGCCESLLAKDGLLVL 173 (288)
Q Consensus 140 I~~~~~l~~--------------------~-~~--~~~~~~l~~~~~~LkpgG~l~~ 173 (288)
|+++..+.- + ++ ..-..++..+...|++||+..+
T Consensus 297 v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~ai 353 (501)
T TIGR00497 297 VVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAI 353 (501)
T ss_pred EeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEE
Confidence 887653321 0 00 1123466777788888887544
|
Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)). |
| >KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=80.60 E-value=4.2 Score=37.13 Aligned_cols=85 Identities=8% Similarity=0.005 Sum_probs=65.3
Q ss_pred HHHHcCCCCCCEEEEECCcccHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCC---C
Q 048309 61 LIEKARVSKEHEVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKA---K 135 (288)
Q Consensus 61 l~~~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~---~ 135 (288)
...-++..+|.+|+|+.|-.|.-+.+++.- ...++.+.|.++...+..++.+...|. +.++...+|+...+.+ .
T Consensus 205 pA~ll~p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~-~~~~~~~~df~~t~~~~~~~ 283 (413)
T KOG2360|consen 205 PAHLLDPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGV-SIVESVEGDFLNTATPEKFR 283 (413)
T ss_pred hhhhcCCCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCC-CccccccccccCCCCccccc
Confidence 344556778899999999999999988875 356899999999999999999998888 4778888998875412 2
Q ss_pred CCCEEEEccch
Q 048309 136 KYDRIISCEMM 146 (288)
Q Consensus 136 ~fD~I~~~~~l 146 (288)
....|++..++
T Consensus 284 ~v~~iL~Dpsc 294 (413)
T KOG2360|consen 284 DVTYILVDPSC 294 (413)
T ss_pred ceeEEEeCCCC
Confidence 34455554444
|
|
| >cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases | Back alignment and domain information |
|---|
Probab=80.54 E-value=8 Score=34.07 Aligned_cols=90 Identities=17% Similarity=0.245 Sum_probs=57.2
Q ss_pred CCCEEEEECC-c-ccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEE-cc-----cCCCCCCCCCCEE
Q 048309 69 KEHEVLEIGC-G-WGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYL-CD-----YRQLPKAKKYDRI 140 (288)
Q Consensus 69 ~~~~vLDiGc-G-~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~-~d-----~~~~~~~~~fD~I 140 (288)
.+.+||=.|+ | .|..+..+|+..+.++++++.+++..+.+++ .|.. .++. .+ +..+ ....+|+|
T Consensus 146 ~~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~----~g~~---~v~~~~~~~~~~~~~~-~~~~~d~v 217 (326)
T cd08289 146 EQGPVLVTGATGGVGSLAVSILAKLGYEVVASTGKADAADYLKK----LGAK---EVIPREELQEESIKPL-EKQRWAGA 217 (326)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHCCCeEEEEecCHHHHHHHHH----cCCC---EEEcchhHHHHHHHhh-ccCCcCEE
Confidence 3668988886 3 4778888888778899999988887666643 2331 1111 11 1111 23468888
Q ss_pred EEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 141 ISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 141 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
+.... ...+....+.|+++|+++...
T Consensus 218 ld~~g---------~~~~~~~~~~l~~~G~~i~~g 243 (326)
T cd08289 218 VDPVG---------GKTLAYLLSTLQYGGSVAVSG 243 (326)
T ss_pred EECCc---------HHHHHHHHHHhhcCCEEEEEe
Confidence 75321 123556678899999998754
|
yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH |
| >cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=80.07 E-value=25 Score=31.28 Aligned_cols=98 Identities=19% Similarity=0.156 Sum_probs=59.7
Q ss_pred HHcCCCCCCEEEEECCcc-cHHHHHHHHccCCE-EEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccC----------C
Q 048309 63 EKARVSKEHEVLEIGCGW-GTFAIEVVRQTGCN-YTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYR----------Q 130 (288)
Q Consensus 63 ~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~~-v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~----------~ 130 (288)
......++.+||=.|+|. |..+..+++..+.+ +++++.+++..+.+++. |. ..++..+-. .
T Consensus 155 ~~~~~~~g~~VlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~----g~---~~~i~~~~~~~~~~~~~~~~ 227 (341)
T cd08262 155 RRARLTPGEVALVIGCGPIGLAVIAALKARGVGPIVASDFSPERRALALAM----GA---DIVVDPAADSPFAAWAAELA 227 (341)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc----CC---cEEEcCCCcCHHHHHHHHHH
Confidence 445667888998888764 66777777775654 88888888777766542 32 122221111 1
Q ss_pred CCCCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 131 LPKAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 131 ~~~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
....+.+|+++-... . ...+..+.+.++++|+++...
T Consensus 228 ~~~~~~~d~vid~~g-----~---~~~~~~~~~~l~~~g~~v~~g 264 (341)
T cd08262 228 RAGGPKPAVIFECVG-----A---PGLIQQIIEGAPPGGRIVVVG 264 (341)
T ss_pred HhCCCCCCEEEECCC-----C---HHHHHHHHHHhccCCEEEEEC
Confidence 113356998885321 0 124555667889999988643
|
The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 288 | ||||
| 1kp9_A | 287 | Crystal Structure Of Mycolic Acid Cyclopropane Synt | 1e-13 | ||
| 2fk7_A | 318 | Crystal Structure Of Hma (Mmaa4) From Mycobacterium | 1e-13 | ||
| 1kpg_A | 287 | Crystal Structure Of Mycolic Acid Cyclopropane Synt | 2e-13 | ||
| 1tpy_A | 287 | Structure Of The Cyclopropane Synthase Mmaa2 From M | 3e-13 | ||
| 1l1e_A | 287 | Crystal Structure Of Mycolic Acid Cyclopropane Synt | 2e-12 | ||
| 1kpi_A | 302 | Crystal Structure Of Mycolic Acid Cyclopropane Synt | 6e-10 | ||
| 4f84_A | 320 | Structure Analysis Of Geranyl Diphosphate Methyltra | 3e-06 | ||
| 3bus_A | 273 | Crystal Structure Of Rebm Length = 273 | 8e-05 | ||
| 3vc1_A | 312 | Crystal Structure Of Geranyl Diphosphate C-Methyltr | 1e-04 | ||
| 1dus_A | 194 | Mj0882-A Hypothetical Protein From M. Jannaschii Le | 5e-04 |
| >pdb|1KP9|A Chain A, Crystal Structure Of Mycolic Acid Cyclopropane Synthase Cmaa1, Apo-Form Length = 287 | Back alignment and structure |
|
| >pdb|2FK7|A Chain A, Crystal Structure Of Hma (Mmaa4) From Mycobacterium Tuberculosis, Apo- Form Length = 318 | Back alignment and structure |
|
| >pdb|1KPG|A Chain A, Crystal Structure Of Mycolic Acid Cyclopropane Synthase Cmaa1 Complexed With Sah And Ctab Length = 287 | Back alignment and structure |
|
| >pdb|1TPY|A Chain A, Structure Of The Cyclopropane Synthase Mmaa2 From Mycobacterium Tuberculosis Length = 287 | Back alignment and structure |
|
| >pdb|1L1E|A Chain A, Crystal Structure Of Mycolic Acid Cyclopropane Synthase Pcaa Complexed With S-Adenosyl-L-Homocysteine Length = 287 | Back alignment and structure |
|
| >pdb|1KPI|A Chain A, Crystal Structure Of Mycolic Acid Cyclopropane Synthase Cmaa2 Complexed With Sah And Dddmab Length = 302 | Back alignment and structure |
|
| >pdb|4F84|A Chain A, Structure Analysis Of Geranyl Diphosphate Methyltransferase In Complex With Sam Length = 320 | Back alignment and structure |
|
| >pdb|3BUS|A Chain A, Crystal Structure Of Rebm Length = 273 | Back alignment and structure |
|
| >pdb|3VC1|A Chain A, Crystal Structure Of Geranyl Diphosphate C-Methyltransferase From Streptomyces Coelicolor A3(2) In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And S-Adenosyl-L-Homocysteine Length = 312 | Back alignment and structure |
|
| >pdb|1DUS|A Chain A, Mj0882-A Hypothetical Protein From M. Jannaschii Length = 194 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* Length = 318 | Back alignment and structure |
|---|
Score = 266 bits (681), Expect = 9e-89
Identities = 64/307 (20%), Positives = 101/307 (32%), Gaps = 59/307 (19%)
Query: 15 VNQKSYFLRHISRKNSLAQAHRNISYHYDL---------------------DEDEDLKVA 53
V + S+ +I HYD+ + L+ A
Sbjct: 15 VPRGSHMAEKPISPTKTRTRFEDIQAHYDVSDDFFALFQDPTRTYSCAYFEPPELTLEEA 74
Query: 54 QMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVN 113
Q K L ++K + +L+IGCGWGT V + N G+TLS Q E +
Sbjct: 75 QYAKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLA 134
Query: 114 EAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVL 173
++ L + + DRI+S E E GHE +++F C +++ DG + +
Sbjct: 135 SIDTNRSRQVLLQGWEDFA--EPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTV 192
Query: 174 QFSSTPDARYNEYRL---------SSDFIKEYIFPGGCLPSLSRITSAMAAA-------- 216
Q S + R FI IFPGG LPS + A
Sbjct: 193 QSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPSTEMMVEHGEKAGFTVPEPL 252
Query: 217 ------------------SSLSKILALGFNEKFIWTWEYYFDYSAAGFKPRTLGNYQIVL 258
S+ K + + E+ + Y F L +
Sbjct: 253 SLRPHYIKTLRIWGDTLQSNKDKAIEVTS-EEVYNRYMKYLRGCEHYFTDEMLDCSLVTY 311
Query: 259 SRPGNVS 265
+PG +
Sbjct: 312 LKPGAAA 318
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* Length = 287 | Back alignment and structure |
|---|
Score = 247 bits (632), Expect = 1e-81
Identities = 62/288 (21%), Positives = 103/288 (35%), Gaps = 59/288 (20%)
Query: 29 NSLAQAHRNISYHYDL---------------------DEDEDLKVAQMRKHSLLIEKARV 67
+ L N+ HYDL +D L+ AQ+ K L + K +
Sbjct: 3 DELKPHFANVQAHYDLSDDFFRLFLDPTQTYSCAYFERDDMTLQEAQIAKIDLALGKLGL 62
Query: 68 SKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCD 127
+L++GCGWG + V + N G+TLS Q + + V + R+ L
Sbjct: 63 QPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAG 122
Query: 128 YRQLPKAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPDARY---- 183
+ Q + DRI+S E GHE + +F LL DG+++L + +
Sbjct: 123 WEQFD--EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHER 180
Query: 184 -----NEYRLSSDFIKEYIFPGGCLPSLSRITSAMAAA---------------------- 216
+ FI IFPGG LPS+ + +A
Sbjct: 181 GLPMSFTFARFLKFIVTEIFPGGRLPSIPMVQECASANGFTVTRVQSLQPHYAKTLDLWS 240
Query: 217 ----SSLSKILALGFNEKFIWTWEYYFDYSAAGFKPRTLGNYQIVLSR 260
++ + +AL +E+ + Y A F+ + Q +
Sbjct: 241 AALQANKGQAIAL-QSEEVYERYMKYLTGCAEMFRIGYIDVNQFTCQK 287
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} PDB: 1kpi_A* Length = 302 | Back alignment and structure |
|---|
Score = 227 bits (581), Expect = 7e-74
Identities = 57/301 (18%), Positives = 98/301 (32%), Gaps = 66/301 (21%)
Query: 23 RHISRKNSLAQAHRNISYHYDL---------------------DEDEDLKVAQMRKHSLL 61
+ L + HYD D L+ AQ K L
Sbjct: 5 GDTTSGTQLKPPVEAVRSHYDKSNEFFKLWLDPSMTYSCAYFERPDMTLEEAQYAKRKLA 64
Query: 62 IEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHI 121
++K + +L+IGCGWG+ V + N G+TLS Q + + +E
Sbjct: 65 LDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRK 124
Query: 122 RLYLCDYRQLPKAKKYDRIISCEMMEA-------VGHEYMEEYFGCCESLLAKDGLLVLQ 174
+ + + + + DRI+S E G E + +F +L DG ++L
Sbjct: 125 EVRIQGWEEFD--EPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLH 182
Query: 175 FSSTPDARYN---------EYRLSSDFIKEYIFPGGCLPSLSRITSAMAAA--------- 216
+ PD FI IFPGG LP +S++ + A
Sbjct: 183 TITIPDKEEAQELGLTSPMSLLRFIKFILTEIFPGGRLPRISQVDYYSSNAGWKVERYHR 242
Query: 217 -----------------SSLSKILALGFNEKFIWTWEYYFDYSAAGFKPRTLGNYQIVLS 259
+ + +AL ++ + +Y + F+ + Q L
Sbjct: 243 IGANYVPTLNAWADALQAHKDEAIAL-KGQETCDIYMHYLRGCSDLFRDKYTDVCQFTLV 301
Query: 260 R 260
+
Sbjct: 302 K 302
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* Length = 312 | Back alignment and structure |
|---|
Score = 159 bits (404), Expect = 3e-47
Identities = 40/255 (15%), Positives = 75/255 (29%), Gaps = 48/255 (18%)
Query: 27 RKNSLAQAHRNISYHYDLDED------------------EDLKVAQMRKHSLLIEK-ARV 67
L +HY + +L + + L++ +
Sbjct: 56 VNLRLGDVDGLYHHHYGIGPVDRAALGDPEHSEYEKKVIAELHRLESAQAEFLMDHLGQA 115
Query: 68 SKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCD 127
+ +++ GCG G + R+ G G+TLSA Q + + E + DH+R +C+
Sbjct: 116 GPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCN 175
Query: 128 YRQLPKAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPDARYNEYR 187
P + + E+ + + + F L G V RY +
Sbjct: 176 MLDTPFD--KGAVTASWNNESTMYVDLHDLFSEHSRFLKVGGRYVTITGCWNP-RYGQPS 232
Query: 188 LSSDFIKEYIFPGGCLPSLSRITSAMAAAS-------------------SLSKILALGFN 228
I + + S AMA + L G
Sbjct: 233 KWVSQINAHFECN--IHSRREYLRAMADNRLVPHTIVDLTPDTLPYWELRATSSLVTGIE 290
Query: 229 EKFI-----WTWEYY 238
+ FI +++Y
Sbjct: 291 KAFIESYRDGSFQYV 305
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 Length = 256 | Back alignment and structure |
|---|
Score = 148 bits (375), Expect = 1e-43
Identities = 26/171 (15%), Positives = 47/171 (27%), Gaps = 6/171 (3%)
Query: 46 EDEDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQM 105
E K++ L R+ +L++G G G R G TGI +S+
Sbjct: 13 EHRIHNPFTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFT 72
Query: 106 KYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMMEAVGHEYMEEYFGCCESLL 165
A+ + E G+ + + D +K D G L
Sbjct: 73 AQAKRRAEELGVSERVHFIHNDAAGYVANEKCDVAACVGATWIAGG--FAGAEELLAQSL 130
Query: 166 AKDGLLVLQFSSTPDARYNEYRLSSDFIKEYIFPGGCLPSLSRITSAMAAA 216
G++++ E + +L + A
Sbjct: 131 KPGGIMLIGEPYWRQLPATEEI----AQACGVSSTSDFLTLPGLVGAFDDL 177
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266 | Back alignment and structure |
|---|
Score = 129 bits (325), Expect = 3e-36
Identities = 34/205 (16%), Positives = 67/205 (32%), Gaps = 19/205 (9%)
Query: 22 LRHISRKNSLAQAHRNISYHYDLDED--------EDLKVAQMRKHSLLIEKARVSKEHEV 73
+ I NS + + + D + + ++ +++ +V
Sbjct: 1 MTLIENLNS-DKTFLENNQYTDEGVKVYEFIFGENYISSGGLEATKKILSDIELNENSKV 59
Query: 74 LEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPK 133
L+IG G G + + + G + GI + + + A + I D
Sbjct: 60 LDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMAN---ERVSGNNKIIFEANDILTKEF 116
Query: 134 AK-KYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPDARYNEYRLSSDF 192
+ +D I S + + A+ E + F C L G L++ D E D
Sbjct: 117 PENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLIT-----DYCATEKENWDDE 171
Query: 193 IKEYIFPGG-CLPSLSRITSAMAAA 216
KEY+ L ++ + A
Sbjct: 172 FKEYVKQRKYTLITVEEYADILTAC 196
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273 | Back alignment and structure |
|---|
Score = 123 bits (311), Expect = 6e-34
Identities = 35/185 (18%), Positives = 64/185 (34%), Gaps = 8/185 (4%)
Query: 35 HRNISYHYDLDEDEDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCN 94
+ + Y D D + A R +I V VL++GCG G A+ +
Sbjct: 27 NLHFGYWEDAGADVSVDDATDRLTDEMIALLDVRSGDRVLDVGCGIGKPAVRLATARDVR 86
Query: 95 YTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAKKYDRIISCEMMEAVGHEY 153
TGI++S Q+ A + AGL + + D LP + +D + + E + +
Sbjct: 87 VTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFEDASFDAVWALESLHHMPD-- 144
Query: 154 MEEYFGCCESLLAKDGLLVLQFSSTPDARYNEYRLSSDFIKEYIFPGGC--LPSLSRITS 211
+L G + + + + + + GG L + S
Sbjct: 145 RGRALREMARVLRPGGTVAI---ADFVLLAPVEGAKKEAVDAFRAGGGVLSLGGIDEYES 201
Query: 212 AMAAA 216
+ A
Sbjct: 202 DVRQA 206
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Length = 297 | Back alignment and structure |
|---|
Score = 111 bits (278), Expect = 6e-29
Identities = 35/207 (16%), Positives = 76/207 (36%), Gaps = 12/207 (5%)
Query: 35 HRNISYHYDLDEDEDLKVAQMRKH----SLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ 90
++ + + + ++++ A +R S L + ++ + L++G G+G A +VR+
Sbjct: 44 DIHVGLYKEPVDQDEIREASLRTDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRK 103
Query: 91 TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAK-KYDRIISCEMMEAV 149
G + + ++ Q K E N+AGL D+I + + ++P YD I S +
Sbjct: 104 FGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQDAFLHS 163
Query: 150 GHEYMEEYFGCCESLLAKDGLLVLQFSSTPDARYNEYRLSSDFIKEYIFPGGCLPSLSRI 209
+ F C +L G++ + D + + SL
Sbjct: 164 PD--KLKVFQECARVLKPRGVMAITDPMKEDGIDKSSI--QPILDRIKLHD--MGSLGLY 217
Query: 210 TSAMAAASSLSKILALGFNEKFIWTWE 236
S L + + + +
Sbjct: 218 RSLAKEC-GLVTLRTFSRPDSLVHHYS 243
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305 | Back alignment and structure |
|---|
Score = 84.7 bits (209), Expect = 3e-19
Identities = 30/160 (18%), Positives = 46/160 (28%), Gaps = 5/160 (3%)
Query: 39 SYHYDLDEDEDLKVAQMRKHSLLIEK--ARVSKEHEVLEIGCGWG--TFAIEVVRQTGCN 94
E +A +H + V + CGW A++ G
Sbjct: 86 PLERVFYERLPAVLATRERHGHFRRALQRHLRPGCVVASVPCGWMSELLALDYSACPGVQ 145
Query: 95 YTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMMEAV-GHEY 153
GI E + A L I L+ D +L + YD + S +
Sbjct: 146 LVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTREGYDLLTSNGLNIYEPDDAR 205
Query: 154 MEEYFGCCESLLAKDGLLVLQFSSTPDARYNEYRLSSDFI 193
+ E + L G LV F + P A + I
Sbjct: 206 VTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQAI 245
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257 | Back alignment and structure |
|---|
Score = 78.7 bits (194), Expect = 3e-17
Identities = 26/160 (16%), Positives = 55/160 (34%), Gaps = 11/160 (6%)
Query: 59 SLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQ 118
+ ++ + ++ +IGCG G + + TGI L + ++ +A
Sbjct: 36 KAVSFINELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCA 95
Query: 119 DHIRLYLCDYRQLPKAKK-YDRIISCEMMEAVGHE-YMEEYFGCCESLLAKDGLLVLQFS 176
D ++ LP + D I S + +G E M E+ L K G + +
Sbjct: 96 DRVKGITGSMDNLPFQNEELDLIWSEGAIYNIGFERGMNEWS----KYLKKGGFIAVS-- 149
Query: 177 STPDARYNEYRLSSDFIKEYIFPGGCLPSLSRITSAMAAA 216
+A + ++ ++ + + M A
Sbjct: 150 ---EASWFTSERPAEIEDFWMDAYPEISVIPTCIDKMERA 186
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209 | Back alignment and structure |
|---|
Score = 76.5 bits (188), Expect = 6e-17
Identities = 31/144 (21%), Positives = 57/144 (39%), Gaps = 3/144 (2%)
Query: 58 HSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGL 117
+ L + + VL+ G G + + + G GI +S Q+K AE E
Sbjct: 12 YRFLKYCNESNLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENNF 71
Query: 118 QDHIRLYLCDYRQLP-KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFS 176
+ + + D R+LP K + + S + + ++E + +L GL + F
Sbjct: 72 K--LNISKGDIRKLPFKDESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLKPGGLACINFL 129
Query: 177 STPDARYNEYRLSSDFIKEYIFPG 200
+T D RYN+ + + G
Sbjct: 130 TTKDERYNKGEKIGEGEFLQLERG 153
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Length = 217 | Back alignment and structure |
|---|
Score = 73.4 bits (180), Expect = 1e-15
Identities = 24/154 (15%), Positives = 63/154 (40%), Gaps = 17/154 (11%)
Query: 44 LDEDEDLK----VAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGC-NYTGI 98
++E+ ++ + Q R + ++ + S V+++GCG G +++ + TG+
Sbjct: 1 MEEEAAVEKPISLNQQR-MNGVVAALKQSNARRVIDLGCGQGNLLKILLKDSFFEQITGV 59
Query: 99 TLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQ------LPKAKKYDRIISCEMMEAVGHE 152
+S ++ A+ +++ L + L Q + YD E++E +
Sbjct: 60 DVSYRSLEIAQERLDRLRLPRNQWERL-QLIQGALTYQDKRFHGYDAATVIEVIEHLDLS 118
Query: 153 YMEEYFGCCESLLAKDGLLVLQFSSTPDARYNEY 186
+ + + ++++ +TP+ YN
Sbjct: 119 RLGAFERVLFEFA-QPKIVIV---TTPNIEYNVK 148
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234 | Back alignment and structure |
|---|
Score = 67.5 bits (165), Expect = 1e-13
Identities = 31/199 (15%), Positives = 75/199 (37%), Gaps = 17/199 (8%)
Query: 60 LLIEKARVSKEHEVLEIGCGWGTFAIEVVRQT-GCNYTGITLSAEQMKYAEMKVNEAGLQ 118
+ + ++ ++L++G G G + ++ + +T + +S + ++ A+ +
Sbjct: 35 SVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRG---N 91
Query: 119 DHIRLYLCDYRQLPKAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSST 178
++ DY + +KYD ++S + + E +E + S+L + G+ +
Sbjct: 92 LKVKYIEADYSKYDFEEKYDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVH 151
Query: 179 P---------DARYNEYRLSSDFIKEYIFPGGCLPSLSRITSAMAAASSLSKILALGFNE 229
+ +Y +S +E I G L + + L + GF +
Sbjct: 152 GETAFIENLNKTIWRQYVENSGLTEEEIAAGYERSKLDKDIEMNQQLNWLKEA---GFRD 208
Query: 230 KFIWTWEYYFDYSAAGFKP 248
++YY G K
Sbjct: 209 VSCI-YKYYQFAVMFGRKT 226
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 252 | Back alignment and structure |
|---|
Score = 67.6 bits (165), Expect = 2e-13
Identities = 25/164 (15%), Positives = 59/164 (35%), Gaps = 10/164 (6%)
Query: 37 NISYHYDLDEDEDLKVAQMRKHSL--LIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCN 94
++ +YD ++ + + + ++ + VL++ CG G +E+ + G
Sbjct: 7 LLAEYYDTIYRRRIERVKAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAER-GYE 65
Query: 95 YTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMMEAVGH--- 151
G+ L E ++ A K E L I D ++ ++D + + +
Sbjct: 66 VVGLDLHEEMLRVARRKAKERNL--KIEFLQGDVLEIAFKNEFDAVTM--FFSTIMYFDE 121
Query: 152 EYMEEYFGCCESLLAKDGLLVLQFSSTPDARYNEYRLSSDFIKE 195
E + + F L G+ + F + + ++ E
Sbjct: 122 EDLRKLFSKVAEALKPGGVFITDFPCWFYGGRDGPVVWNEQKGE 165
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267 | Back alignment and structure |
|---|
Score = 67.6 bits (165), Expect = 2e-13
Identities = 23/116 (19%), Positives = 47/116 (40%), Gaps = 6/116 (5%)
Query: 60 LLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQD 119
L ++++ + +IGCG G + + TG+ + + ++GLQ+
Sbjct: 37 ALSFIDNLTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQN 96
Query: 120 HIRLYLCDYRQLP-KAKKYDRIISCEMMEAVGHE-YMEEYFGCCESLLAKDGLLVL 173
+ + LP + ++ D I S + +G E + E+ L K G L +
Sbjct: 97 RVTGIVGSMDDLPFRNEELDLIWSEGAIYNIGFERGLNEWR----KYLKKGGYLAV 148
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Length = 286 | Back alignment and structure |
|---|
Score = 67.7 bits (165), Expect = 2e-13
Identities = 28/167 (16%), Positives = 62/167 (37%), Gaps = 7/167 (4%)
Query: 34 AHRNISYHYDLDEDEDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGC 93
+ ++ ++ K H +++ A++ +VL++GCG G ++ + G
Sbjct: 85 LECTLGFYCKKEDYFSKKYNTTAIHGDVVDAAKIISPCKVLDLGCGQGRNSLYLSLL-GY 143
Query: 94 NYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMMEAVGHEY 153
+ T + + + + L +I L D + YD I+S + + E
Sbjct: 144 DVTSWDHNENSIAFLNETKEKENL--NISTALYDINAANIQENYDFIVSTVVFMFLNRER 201
Query: 154 MEEYFGCCESLLAKDG-LLVLQFSSTPDARYN---EYRLSSDFIKEY 196
+ + G L++ ST D + + + +KEY
Sbjct: 202 VPSIIKNMKEHTNVGGYNLIVAAMSTDDVPCPLPFSFTFAENELKEY 248
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Length = 219 | Back alignment and structure |
|---|
Score = 64.6 bits (157), Expect = 1e-12
Identities = 21/132 (15%), Positives = 52/132 (39%), Gaps = 12/132 (9%)
Query: 62 IEKARVSKEHEVLEIGCGWGTFAIEVVRQTGC-NYTGITLSAEQMKYAEMKVNEAGLQDH 120
+ + +V+++GCG G +++ TG+ +S ++ A+ ++ L +
Sbjct: 22 VAVLKSVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEM 81
Query: 121 IRLYLCDYRQ------LPKAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174
R + Q + YD E++E + ++ + + +++
Sbjct: 82 QRKRI-SLFQSSLVYRDKRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFT-RPQTVIV- 138
Query: 175 FSSTPDARYNEY 186
STP+ YN +
Sbjct: 139 --STPNKEYNFH 148
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} Length = 230 | Back alignment and structure |
|---|
Score = 64.4 bits (157), Expect = 2e-12
Identities = 21/117 (17%), Positives = 50/117 (42%), Gaps = 13/117 (11%)
Query: 73 VLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP 132
VL+IGC G +++ G +GI E + A+ K++ L D + +P
Sbjct: 36 VLDIGCSSGALG-AAIKENGTRVSGIEAFPEAAEQAKEKLDHVVLGD------IETMDMP 88
Query: 133 -KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPDARYNEYRL 188
+ +++D +I +++E + + + ++G+++ S P+ +
Sbjct: 89 YEEEQFDCVIFGDVLEHL--FDPWAVIEKVKPYIKQNGVILA---SIPNVSHISVLA 140
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} Length = 261 | Back alignment and structure |
|---|
Score = 64.2 bits (155), Expect = 3e-12
Identities = 21/160 (13%), Positives = 46/160 (28%), Gaps = 26/160 (16%)
Query: 73 VLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKV-NEAGLQDHIRLYLCDYRQL 131
V IG + + + G + T S + + D + + ++L
Sbjct: 49 VAVIGASTRFLIEKALER-GASVTVFDFSQRMCDDLAEALADRCVTIDLLDITAEIPKEL 107
Query: 132 PKAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLA--------KDGLL------------ 171
A +D +++ ++ E SL+ K G
Sbjct: 108 --AGHFDFVLNDRLINRFTTEEARRACLGMLSLVGSGTVRASVKLGFYDIDLKLIEYGEQ 165
Query: 172 --VLQFSSTPDARYNEYRLSSDFIKEYIFPGGCLPSLSRI 209
L P + +R + D + + P G + + +
Sbjct: 166 SGTLAKFFDPSDKTFHFREAGDVLDRALVPHGLIDKPTLL 205
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Length = 246 | Back alignment and structure |
|---|
Score = 64.0 bits (156), Expect = 3e-12
Identities = 28/145 (19%), Positives = 55/145 (37%), Gaps = 9/145 (6%)
Query: 37 NISYHYDLDEDEDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYT 96
++ YD D+ + + + L++ CG G + + N
Sbjct: 5 KFAHIYDKLIRADVDYKKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPK-FKNTW 63
Query: 97 GITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMMEAVGH----E 152
+ LS E + AE K GL RL D L +K+D I +++ + +
Sbjct: 64 AVDLSQEMLSEAENKFRSQGL--KPRLACQDISNLNINRKFDLITC--CLDSTNYIIDSD 119
Query: 153 YMEEYFGCCESLLAKDGLLVLQFSS 177
+++YF + L + G+ + +S
Sbjct: 120 DLKKYFKAVSNHLKEGGVFIFDINS 144
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Length = 199 | Back alignment and structure |
|---|
Score = 62.9 bits (153), Expect = 4e-12
Identities = 27/145 (18%), Positives = 57/145 (39%), Gaps = 6/145 (4%)
Query: 56 RKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEA 115
R HS ++E +V K + L++GCG G ++ + G + +A + E +
Sbjct: 19 RTHSEVLEAVKVVKPGKTLDLGCGNGRNSLYLAAN-GYDVDAWDKNAMSIANVERIKSIE 77
Query: 116 GLQDHIRLYLCDYRQLPKAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDG-LLVLQ 174
L D++ + D L ++YD I+S ++ + + + + G L++
Sbjct: 78 NL-DNLHTRVVDLNNLTFDRQYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVA 136
Query: 175 FSSTPDARYNE---YRLSSDFIKEY 196
T D + ++ Y
Sbjct: 137 AMDTADYPCTVGFPFAFKEGELRRY 161
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Length = 240 | Back alignment and structure |
|---|
Score = 63.4 bits (154), Expect = 6e-12
Identities = 32/145 (22%), Positives = 60/145 (41%), Gaps = 10/145 (6%)
Query: 39 SYHYDLDEDEDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGI 98
S +Y L E++ ++ K L VL+IGCG G F +E+ ++ G G+
Sbjct: 11 SDYYFLFEEKFRGSRELVKARLRRYIPYFKGCRRVLDIGCGRGEF-LELCKEEGIESIGV 69
Query: 99 TLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMMEAVGHEYMEEYF 158
++ + +K+ E K N ++ YL K D ++ +E + E + E
Sbjct: 70 DINEDMIKFCEGKFNV--VKSDAIEYLKSL----PDKYLDGVMISHFVEHLDPERLFELL 123
Query: 159 GCCESLLAKDGLLVLQFSSTPDARY 183
C S + +V+ +P+
Sbjct: 124 SLCYSKMKYSSYIVI---ESPNPTS 145
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219 | Back alignment and structure |
|---|
Score = 62.1 bits (151), Expect = 9e-12
Identities = 16/98 (16%), Positives = 37/98 (37%), Gaps = 1/98 (1%)
Query: 35 HRNISYHYDLDEDEDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCN 94
+ + + D +I + ++ ++IG G G +I + +Q+ +
Sbjct: 10 DKKGAKNMDEISKTLFAPIYPIIAENIINRFGITAGT-CIDIGSGPGALSIALAKQSDFS 68
Query: 95 YTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP 132
+ S + A + +A L D I++ D +P
Sbjct: 69 IRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIP 106
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227 | Back alignment and structure |
|---|
Score = 61.8 bits (150), Expect = 1e-11
Identities = 26/162 (16%), Positives = 59/162 (36%), Gaps = 6/162 (3%)
Query: 37 NISYHYDLDEDEDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYT 96
+ Y ++ + LL++ + K +VL++ CG G F+ + G
Sbjct: 8 RVFPTYTDINSQEYRSRIETLEPLLMKYMK--KRGKVLDLACGVGGFSFLLEDY-GFEVV 64
Query: 97 GITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAKKYDRIISCEMMEAVGHEYME 155
G+ +S + ++ A + + D R+L + K +D +I + + +
Sbjct: 65 GVDISEDMIRKAREYAKSRESN--VEFIVGDARKLSFEDKTFDYVIFIDSIVHFEPLELN 122
Query: 156 EYFGCCESLLAKDGLLVLQFSSTPDARYNEYRLSSDFIKEYI 197
+ F +L G ++ F+ + K +I
Sbjct: 123 QVFKEVRRVLKPSGKFIMYFTDLRELLPRLKESLVVGQKYWI 164
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A Length = 250 | Back alignment and structure |
|---|
Score = 61.4 bits (149), Expect = 3e-11
Identities = 29/161 (18%), Positives = 57/161 (35%), Gaps = 29/161 (18%)
Query: 33 QAHRNISYHYDLDEDEDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTG 92
A +Y++D D V + LE+G G F +++
Sbjct: 15 TAGHKYAYNFDFDVMHPFMVRAFTPF---FRPGNL------LELGSFKGDFT-SRLQEHF 64
Query: 93 CNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMMEAVGH- 151
+ T + S E + +A+ + L+D I + ++YD I+ ++E H
Sbjct: 65 NDITCVEASEEAISHAQGR-----LKDGITYIHSRFEDAQLPRRYDNIVLTHVLE---HI 116
Query: 152 ----EYMEEYFGCCESLLAKDGLLVLQFSSTPDARYNEYRL 188
++ + LA+ G L L P+A ++
Sbjct: 117 DDPVALLKR---INDDWLAEGGRLFL---VCPNANAVSRQI 151
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220 | Back alignment and structure |
|---|
Score = 61.0 bits (148), Expect = 3e-11
Identities = 27/187 (14%), Positives = 48/187 (25%), Gaps = 13/187 (6%)
Query: 37 NISYHYDL--DEDEDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCN 94
++ YD ++ + ++E VLE G G G +++ G
Sbjct: 11 EWAHTYDSFVQGEDIQYKEVFAHYEDILEDVVNKSFGNVLEFGVGTGNLTNKLLLA-GRT 69
Query: 95 YTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMMEAVGHEYM 154
GI S E A+ K L + D+ D I+S + +
Sbjct: 70 VYGIEPSREMRMIAKEK-----LPKEFSITEGDFLSFEVPTSIDTIVSTYAFHHLTDDEK 124
Query: 155 EEYFGCCESLLAKDGLLVLQF-----SSTPDARYNEYRLSSDFIKEYIFPGGCLPSLSRI 209
LL K G +V D + + +
Sbjct: 125 NVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVM 184
Query: 210 TSAMAAA 216
+
Sbjct: 185 QTIFENN 191
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Length = 299 | Back alignment and structure |
|---|
Score = 61.1 bits (148), Expect = 5e-11
Identities = 20/118 (16%), Positives = 38/118 (32%), Gaps = 5/118 (4%)
Query: 73 VLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGL--QDHIRLYLCDYRQ 130
VLE+ G G + G T + LS + ++ EA +D L D
Sbjct: 86 VLELAAGMGRLTFPFLDL-GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSA 144
Query: 131 LPKAKKYDRIIS-CEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPDARYNEYR 187
K++ ++ + + + L G +L + +A +E
Sbjct: 145 FALDKRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSL-AMSEAAESEPL 201
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} Length = 243 | Back alignment and structure |
|---|
Score = 59.7 bits (145), Expect = 8e-11
Identities = 27/118 (22%), Positives = 50/118 (42%), Gaps = 10/118 (8%)
Query: 64 KARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRL 123
+V + +IGCG GT + + TG+ LS E ++ A+ K E H+
Sbjct: 28 LEQVEPGKRIADIGCGTGTATLLLAD--HYEVTGVDLSEEMLEIAQEKAMETNR--HVDF 83
Query: 124 YLCDYRQLPKAKKYDRIISCEMMEAVGH----EYMEEYFGCCESLLAKDGLLVLQFSS 177
++ D R+L + D I + +++ + +++ F LL G L+ S
Sbjct: 84 WVQDMRELELPEPVDAITI--LCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFDVHS 139
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} Length = 235 | Back alignment and structure |
|---|
Score = 59.3 bits (143), Expect = 1e-10
Identities = 24/131 (18%), Positives = 42/131 (32%), Gaps = 2/131 (1%)
Query: 72 EVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQL 131
L GCG G + + G+ +S + A + ++ D
Sbjct: 69 RALVPGCGGGHDVVAMASP-ERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTW 127
Query: 132 PKAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDG-LLVLQFSSTPDARYNEYRLSS 190
+ +D I A+ E + LL DG L+ L + T Y++
Sbjct: 128 RPTELFDLIFDYVFFCAIEPEMRPAWAKSMYELLKPDGELITLMYPITDHVGGPPYKVDV 187
Query: 191 DFIKEYIFPGG 201
+E + P G
Sbjct: 188 STFEEVLVPIG 198
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Length = 216 | Back alignment and structure |
|---|
Score = 58.7 bits (142), Expect = 1e-10
Identities = 27/121 (22%), Positives = 40/121 (33%), Gaps = 5/121 (4%)
Query: 54 QMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVN 113
+ R LL LEIGC G F ++ T I + + A +
Sbjct: 36 RERHTQLLRLSLSSGAVSNGLEIGCAAGAFTEKLAPH-CKRLTVIDVMPRAIGRACQRTK 94
Query: 114 EAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMMEAVGH-EYMEEYFGCCESLLAKDGLLV 172
HI D Q A+ +D I+ E++ + M +LA G LV
Sbjct: 95 RWS---HISWAATDILQFSTAELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLV 151
Query: 173 L 173
Sbjct: 152 F 152
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} Length = 950 | Back alignment and structure |
|---|
Score = 59.9 bits (144), Expect = 3e-10
Identities = 28/218 (12%), Positives = 66/218 (30%), Gaps = 27/218 (12%)
Query: 2 LITNRDLDALVSKVNQKSYFL----RHISRKNSLAQAHRNISYHYDLDEDEDLKVAQMRK 57
+ ++ + + R SL ++Y+ L + +M
Sbjct: 639 MTVGEYASFKMTPPDAAEALILAVGSDTVRIRSLLSERPCLNYNILLLGVKGPSEERMEA 698
Query: 58 -----------HSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGC--NYTGITLSAEQ 104
++ R S +++ GCG G+ ++ G+ +S +
Sbjct: 699 AFFKPPLSKQRVEYALKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKG 758
Query: 105 MKYAEMKVNEAGLQDHIRLYLCDYRQ------LPKAKKYDRIISCEMMEAVGHEYMEEYF 158
+ A ++ ++ + + D E++E + + E+
Sbjct: 759 LARAAKMLHVKLNKEACNVKSATLYDGSILEFDSRLHDVDIGTCLEVIEHMEEDQACEFG 818
Query: 159 GCCESLLAKDGLLVLQFSSTPDARYNEYRLSSDFIKEY 196
SL LL++ STP+ +N S +
Sbjct: 819 EKVLSLF-HPKLLIV---STPNYEFNTILQRSTPETQE 852
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* Length = 225 | Back alignment and structure |
|---|
Score = 56.4 bits (136), Expect = 1e-09
Identities = 21/110 (19%), Positives = 38/110 (34%), Gaps = 6/110 (5%)
Query: 67 VSKEHEVLEIGCGWGTFAIEVVRQTGCNY-TGITLSAEQMKYAEMKVNEAGLQDHIRLYL 125
VS+ +L++G IE+V + + + A V GL++ I++ L
Sbjct: 13 VSQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRL 72
Query: 126 CD-YRQLPKAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174
+ + + I M G + LA L+LQ
Sbjct: 73 ANGLAAFEETDQVSVITIAGM----GGRLIARILEEGLGKLANVERLILQ 118
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} Length = 239 | Back alignment and structure |
|---|
Score = 55.9 bits (135), Expect = 2e-09
Identities = 28/155 (18%), Positives = 62/155 (40%), Gaps = 18/155 (11%)
Query: 39 SYHYDL---DEDEDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNY 95
+ YDL +D L+ ++R + +L++ CG GT ++ +
Sbjct: 9 ADVYDLFYLGRGKDYAAEASDIADLV--RSRTPEASSLLDVACGTGTHLEHFTKE-FGDT 65
Query: 96 TGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMMEAVGH---- 151
G+ LS + + +A ++ + L+ D R +K+ ++S M +VG+
Sbjct: 66 AGLELSEDMLTHARKRLPD------ATLHQGDMRDFRLGRKFSAVVS--MFSSVGYLKTT 117
Query: 152 EYMEEYFGCCESLLAKDGLLVLQFSSTPDARYNEY 186
E + L G++V++ P+ + +
Sbjct: 118 EELGAAVASFAEHLEPGGVVVVEPWWFPETFADGW 152
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Length = 245 | Back alignment and structure |
|---|
Score = 55.4 bits (133), Expect = 2e-09
Identities = 23/137 (16%), Positives = 42/137 (30%), Gaps = 3/137 (2%)
Query: 49 DLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYA 108
D V + L + + E +++ CG GT + + G+ +S ++ A
Sbjct: 36 DANVERAVVVDLPRFELLFNPELPLIDFACGNGTQTKFLSQF-FPRVIGLDVSKSALEIA 94
Query: 109 EMKVNEAGLQDHIR--LYLCDYRQLPKAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLA 166
+ A + + L Q+ I + E E LL
Sbjct: 95 AKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMRTGFHHIPVEKRELLGQSLRILLG 154
Query: 167 KDGLLVLQFSSTPDARY 183
K G + L T +
Sbjct: 155 KQGAMYLIELGTGCIDF 171
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276 | Back alignment and structure |
|---|
Score = 56.1 bits (135), Expect = 2e-09
Identities = 24/108 (22%), Positives = 41/108 (37%), Gaps = 3/108 (2%)
Query: 42 YDLDEDEDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITL 100
Y E L LL +VLE GCG G + + + T I +
Sbjct: 10 YSEREALRLSEQAETLEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDI 69
Query: 101 SAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAKKYDRIISCEMME 147
S E ++ A + G+ +++ + LP + +D I C ++E
Sbjct: 70 SPESLEKARENTEKNGI-KNVKFLQANIFSLPFEDSSFDHIFVCFVLE 116
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211 | Back alignment and structure |
|---|
Score = 54.5 bits (131), Expect = 4e-09
Identities = 19/103 (18%), Positives = 34/103 (33%), Gaps = 8/103 (7%)
Query: 73 VLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP 132
+LE+GCG G A ++ G + S E A ++ + QL
Sbjct: 47 ILELGCGAGYQAEAMLAA-GFDVDATDGSPELAAEASRRLGRPVRTM-------LFHQLD 98
Query: 133 KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175
YD + + + V + + + L GL +
Sbjct: 99 AIDAYDAVWAHACLLHVPRDELADVLKLIWRALKPGGLFYASY 141
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218 | Back alignment and structure |
|---|
Score = 54.5 bits (131), Expect = 4e-09
Identities = 31/178 (17%), Positives = 61/178 (34%), Gaps = 10/178 (5%)
Query: 73 VLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP 132
VLE+ G G + + T + SAE + A D++ D
Sbjct: 50 VLELASGTGYWTRHLSGL-ADRVTALDGSAEMIAEAGRH-----GLDNVEFRQQDLFDWT 103
Query: 133 KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPDARYNEYRLSSDF 192
+++D + + V + E ++ S +A G++ + + R + S
Sbjct: 104 PDRQWDAVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTDHERRLEQQDDSEPE 163
Query: 193 IKEYIFPGGCLPSLSRITSAMAAASSLSKIL-ALGFNEKFIWTWEYYFDYSAAGFKPR 249
+ RI + + L++ L ALG++ + F Y+ PR
Sbjct: 164 VAVRRTLQD--GRSFRIVKVFRSPAELTERLTALGWSCS-VDEVHPGFLYATCRPGPR 218
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} Length = 244 | Back alignment and structure |
|---|
Score = 54.5 bits (131), Expect = 5e-09
Identities = 20/117 (17%), Positives = 41/117 (35%), Gaps = 6/117 (5%)
Query: 60 LLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNY-TGITLSAEQMKYAEMKVNEAGLQ 118
L + ++K + +IG V+ ++ + + A+ +V +GL
Sbjct: 12 LEKVASYITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLT 71
Query: 119 DHIRLYLCD-YRQLPKAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174
+ I + + + K D I+ M G + + LA L+LQ
Sbjct: 72 EQIDVRKGNGLAVIEKKDAIDTIVIAGM----GGTLIRTILEEGAAKLAGVTKLILQ 124
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227 | Back alignment and structure |
|---|
Score = 53.7 bits (129), Expect = 9e-09
Identities = 31/150 (20%), Positives = 50/150 (33%), Gaps = 12/150 (8%)
Query: 73 VLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP 132
VL++GCG G + + G G+ + A AG ++P
Sbjct: 56 VLDLGCGEGWLLRALADR-GIEAVGVDGDRTLVDAARAA--GAGEVHLASYAQLAEAKVP 112
Query: 133 KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFS---STPDARYNEYRLS 189
K YD I + + H+ + E +LL G LV+Q S D Y +
Sbjct: 113 VGKDYDLICANFALL---HQDIIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQDGWRE 169
Query: 190 SDFIKEYIFPGG---CLPSLSRITSAMAAA 216
F +L+ +A+ A
Sbjct: 170 ESFAGFAGDWQPMPWYFRTLASWLNALDMA 199
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* Length = 263 | Back alignment and structure |
|---|
Score = 54.1 bits (130), Expect = 1e-08
Identities = 27/158 (17%), Positives = 57/158 (36%), Gaps = 18/158 (11%)
Query: 36 RNISYHYDL---DEDEDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTG 92
I+ YDL + +D +L+ + K +L++ CG G +
Sbjct: 16 GEIAELYDLVHQGKGKDYHREAADLAALV--RRHSPKAASLLDVACGTGMHLRHLADS-F 72
Query: 93 CNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMMEAVGH- 151
G+ LSA+ + A + L+ D R +++ + M ++GH
Sbjct: 73 GTVEGLELSADMLAIARRRN------PDAVLHHGDMRDFSLGRRFSAVTC--MFSSIGHL 124
Query: 152 ---EYMEEYFGCCESLLAKDGLLVLQFSSTPDARYNEY 186
++ + + DG++V++ P+ Y
Sbjct: 125 AGQAELDAALERFAAHVLPDGVVVVEPWWFPENFTPGY 162
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241 | Back alignment and structure |
|---|
Score = 53.1 bits (127), Expect = 1e-08
Identities = 23/150 (15%), Positives = 57/150 (38%), Gaps = 2/150 (1%)
Query: 42 YDLDEDEDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLS 101
Y D+ ++ L E + L+ G G G ++ + ++
Sbjct: 52 YGHISSIDINSSRKFLQRFLREGPNKTGTSCALDCGAGIGRITKRLLLPLFREVDMVDIT 111
Query: 102 AEQMKYAEMKVNEAGLQDHIRLYLCDYRQL-PKAKKYDRIISCEMMEAVGHEYMEEYFGC 160
+ + A+ + E G + + C + P+ YD I ++ + +++ E+
Sbjct: 112 EDFLVQAKTYLGEEGKRV-RNYFCCGLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRR 170
Query: 161 CESLLAKDGLLVLQFSSTPDARYNEYRLSS 190
C+ L +G++V++ + + + SS
Sbjct: 171 CKGSLRPNGIIVIKDNMAQEGVILDDVDSS 200
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Length = 202 | Back alignment and structure |
|---|
Score = 52.6 bits (126), Expect = 2e-08
Identities = 21/125 (16%), Positives = 46/125 (36%), Gaps = 6/125 (4%)
Query: 61 LIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDH 120
L+ A + ++L + G G A + G T + S+ + A+ E G++
Sbjct: 21 LVSVANQIPQGKILCLAEGEGRNACFLASL-GYEVTAVDQSSVGLAKAKQLAQEKGVK-- 77
Query: 121 IRLYLCDYRQLP-KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTP 179
I + A ++ I+S + ++ + L G+ +L+ +
Sbjct: 78 ITTVQSNLADFDIVADAWEGIVSIFCH--LPSSLRQQLYPKVYQGLKPGGVFILEGFAPE 135
Query: 180 DARYN 184
+YN
Sbjct: 136 QLQYN 140
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195 | Back alignment and structure |
|---|
Score = 51.7 bits (124), Expect = 3e-08
Identities = 26/158 (16%), Positives = 51/158 (32%), Gaps = 14/158 (8%)
Query: 32 AQAHRNISYHYDLDEDEDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQT 91
A + +L + + R + + ++L+ GCG G + +Q
Sbjct: 14 AHSENYAQRWRNLAAAGNDIYGEARLIDAMAPRGA-----KILDAGCGQGRIGGYLSKQ- 67
Query: 92 GCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAKKYDRIISCE-MMEAV 149
G + G L + YA+ R + D +D I+S +M +
Sbjct: 68 GHDVLGTDLDPILIDYAKQDF------PEARWVVGDLSVDQISETDFDLIVSAGNVMGFL 121
Query: 150 GHEYMEEYFGCCESLLAKDGLLVLQFSSTPDARYNEYR 187
+ E L DG V+ F + + ++
Sbjct: 122 AEDGREPALANIHRALGADGRAVIGFGAGRGWVFGDFL 159
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Length = 293 | Back alignment and structure |
|---|
Score = 52.7 bits (126), Expect = 3e-08
Identities = 30/160 (18%), Positives = 57/160 (35%), Gaps = 22/160 (13%)
Query: 42 YDL-DEDEDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITL 100
+ L D + A+ + L+ R H VL++ CG G +I +V + G + T +
Sbjct: 31 WQLYIGDTRSRTAEYKAW--LLGLLRQHGCHRVLDVACGTGVDSIMLVEE-GFSVTSVDA 87
Query: 101 SAEQMKYAEMKVNEAGLQDHIRL-------YLCDYRQLPKAKKYDRIISCEMMEAVGH-- 151
S + +KYA + + +L + +P +D +I + + H
Sbjct: 88 SDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVIC--LGNSFAHLP 145
Query: 152 ------EYMEEYFGCCESLLAKDGLLVLQFSSTPDARYNE 185
S++ GLLV+ D +
Sbjct: 146 DSKGDQSEHRLALKNIASMVRPGGLLVIDH-RNYDYILST 184
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* Length = 298 | Back alignment and structure |
|---|
Score = 52.8 bits (126), Expect = 3e-08
Identities = 28/183 (15%), Positives = 57/183 (31%), Gaps = 13/183 (7%)
Query: 25 ISRKNSLAQAHRNISYHYDLDEDEDLKVAQMRKH-----SLLIEKARVSKEHEVLEIGCG 79
+ K + H N + + K +R + LI + VL++GCG
Sbjct: 16 MEGKKEEIREHYNSIRERGRESRQRSKTINIRNANNFIKACLIRLY-TKRGDSVLDLGCG 74
Query: 80 WGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDY--RQLPKAKKY 137
G ++ R Y G+ ++ + A ++ + + D R + K++
Sbjct: 75 KGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEF 134
Query: 138 DRIISCEMMEAV--GHEYMEEYFGCCESLLAKDGLLVLQFSSTPDARYNEYRLSSDFIKE 195
D I S E ++ L G ++ + P R +
Sbjct: 135 DVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIM---TVPSRDVILERYKQGRMSN 191
Query: 196 YIF 198
+
Sbjct: 192 DFY 194
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} Length = 230 | Back alignment and structure |
|---|
Score = 51.8 bits (124), Expect = 4e-08
Identities = 24/110 (21%), Positives = 40/110 (36%), Gaps = 6/110 (5%)
Query: 67 VSKEHEVLEIGCGWGTFAIEVVRQTGCNY-TGITLSAEQMKYAEMKVNEAGLQDHIRLYL 125
V K +L++G I +++ C++ + + A V+E GL I + L
Sbjct: 19 VPKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRL 78
Query: 126 CD-YRQLPKAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174
+ +A D I C M G + + L LVLQ
Sbjct: 79 ANGLSAFEEADNIDTITICGM----GGRLIADILNNDIDKLQHVKTLVLQ 124
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203 | Back alignment and structure |
|---|
Score = 51.0 bits (122), Expect = 6e-08
Identities = 18/133 (13%), Positives = 48/133 (36%), Gaps = 8/133 (6%)
Query: 61 LIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDH 120
LIE + +L++G G G + + G G+ + ++ A
Sbjct: 33 LIEPWATGVDGVILDVGSGTGRWTGHLASL-GHQIEGLEPATRLVELARQTH------PS 85
Query: 121 IRLYLCDYRQLPKA-KKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTP 179
+ + L + K++ +++ + +G + + + G L++ F S P
Sbjct: 86 VTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPGELPDALVALRMAVEDGGGLLMSFFSGP 145
Query: 180 DARYNEYRLSSDF 192
+ +++ +
Sbjct: 146 SLEPMYHPVATAY 158
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} Length = 275 | Back alignment and structure |
|---|
Score = 50.4 bits (120), Expect = 2e-07
Identities = 29/207 (14%), Positives = 61/207 (29%), Gaps = 33/207 (15%)
Query: 41 HYDL----------DEDEDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ 90
D ++ Q + E +V ++LEIGCG G + + Q
Sbjct: 5 RLDYITDLMALGPTANARTIQRRQTAHRLAIAEAWQVKPGEKILEIGCGQGDLSAVLADQ 64
Query: 91 TGCN--YTGITLSAEQMKYAEM------KVNEAGLQDHIRLYLCD---YRQLPKA-KKYD 138
G + TGI +++ + L D + ++ P A + +D
Sbjct: 65 VGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDDLGPIADQHFD 124
Query: 139 RIISCEMMEAVGHEYMEEYFGCCESLLAKDG-LLVLQFS---STPDARYNEYRLSSDFIK 194
R++ + +++ A + V ++S + D + +
Sbjct: 125 RVVLAHSLWYFASA--NALALLFKNMAAVCDHVDVAEWSMQPTALDQIGHLQAAMIQGLL 182
Query: 195 EYIFPGG-----CLPSLSRITSAMAAA 216
I P L + +
Sbjct: 183 YAIAPSDVANIRTLITPDTLAQIAHDN 209
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284 | Back alignment and structure |
|---|
Score = 50.3 bits (120), Expect = 2e-07
Identities = 17/86 (19%), Positives = 31/86 (36%), Gaps = 4/86 (4%)
Query: 60 LLIEKARVSKEHEVLEIGCGWGTFAIEVVRQT--GCNYTGITLSAEQMKYAEMKVNEAGL 117
L+ +++K +++ GCG+G + ++ G YTGI + A
Sbjct: 13 LVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY 72
Query: 118 QDHIRLYLCDYRQLPKAKKYDRIISC 143
D ++ KYD I
Sbjct: 73 D--SEFLEGDATEIELNDKYDIAICH 96
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Length = 292 | Back alignment and structure |
|---|
Score = 49.7 bits (118), Expect = 3e-07
Identities = 21/131 (16%), Positives = 49/131 (37%), Gaps = 18/131 (13%)
Query: 59 SLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-------TGCNYTGITLSAEQMKYAEMK 111
++ E ++L IG G G ++++ + N + SAEQ+ +
Sbjct: 42 GIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKEL 101
Query: 112 VNEAGLQDHIRL---------YLCDYRQLPKAKKYDRIISCEMMEAVGHEYMEEYFGCCE 162
V + ++++ Y + + +K+D I +M+ V +
Sbjct: 102 VAKTSNLENVKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQMLYYVKD--IPATLKFFH 159
Query: 163 SLLAKDGLLVL 173
SLL + +++
Sbjct: 160 SLLGTNAKMLI 170
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254 | Back alignment and structure |
|---|
Score = 48.9 bits (116), Expect = 5e-07
Identities = 15/115 (13%), Positives = 35/115 (30%), Gaps = 4/115 (3%)
Query: 71 HEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQ 130
L+ G G G ++ + + ++ A+ E + L
Sbjct: 95 SRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAK---RELAGMPVGKFILASMET 151
Query: 131 LP-KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPDARYN 184
YD I+ + ++F C+ L +G + + + + R+
Sbjct: 152 ATLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFL 206
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253 | Back alignment and structure |
|---|
Score = 48.4 bits (115), Expect = 7e-07
Identities = 18/105 (17%), Positives = 35/105 (33%), Gaps = 13/105 (12%)
Query: 73 VLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP 132
VL++GCG+G I GI LS + A+ + +
Sbjct: 48 VLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAK----RKTTSPVVCYEQKAIEDIA 103
Query: 133 -KAKKYDRIISCEMMEAVGHEYMEEYFGCCESL---LAKDGLLVL 173
+ Y+ ++S + Y+ + C+ + L G +
Sbjct: 104 IEPDAYNVVLSSLAL-----HYIASFDDICKKVYINLKSSGSFIF 143
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 47.3 bits (112), Expect = 1e-06
Identities = 22/135 (16%), Positives = 46/135 (34%), Gaps = 17/135 (12%)
Query: 67 VSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLC 126
+ E +L +GCG + E+ N T + S+ + + +R
Sbjct: 40 LRPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAHVP---QLRWETM 96
Query: 127 DYRQLP-KAKKYDRIISCEMMEAV-------------GHEYMEEYFGCCESLLAKDGLLV 172
D R+L + +D ++ ++A+ G +++ +L G +
Sbjct: 97 DVRKLDFPSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFI 156
Query: 173 LQFSSTPDARYNEYR 187
S+ P R Y
Sbjct: 157 SMTSAAPHFRTRHYA 171
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} Length = 235 | Back alignment and structure |
|---|
Score = 47.1 bits (112), Expect = 2e-06
Identities = 24/125 (19%), Positives = 50/125 (40%), Gaps = 8/125 (6%)
Query: 62 IEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDH- 120
I + ++ E+L+IGCG G ++E+ + G + TGI +++E ++ AE GL
Sbjct: 23 IIHNYLQEDDEILDIGCGSGKISLELASK-GYSVTGIDINSEAIRLAETAARSPGLNQKT 81
Query: 121 ---IRLYLCDYRQLP-KAKKYDRIISCEMMEAVGH-EYMEEYFGCCESLLAKDG-LLVLQ 174
+ + L +D + + +V + +L L +++
Sbjct: 82 GGKAEFKVENASSLSFHDSSFDFAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVE 141
Query: 175 FSSTP 179
F
Sbjct: 142 FGQNW 146
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 4e-06
Identities = 24/120 (20%), Positives = 50/120 (41%), Gaps = 12/120 (10%)
Query: 35 HRNISYHYDL------DEDEDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVV 88
H + +D +++ + R + + V KE EVL++GCG G ++
Sbjct: 13 HESAEKKWDSSAEFWNQNSQEMWDSGSRSTIIPFFEQYVKKEAEVLDVGCGDGYGTYKLS 72
Query: 89 RQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAKKYDRIISCEMME 147
R G G+ +S ++ + E G + D LP + ++++ I++ +E
Sbjct: 73 RT-GYKAVGVDISEVMIQKGK----ERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSLE 127
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 7e-06
Identities = 16/76 (21%), Positives = 28/76 (36%), Gaps = 5/76 (6%)
Query: 73 VLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP 132
++++GCG+G F G+ LS + + A AG I D +L
Sbjct: 47 IVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARAR----AAGPDTGITYERADLDKLH 102
Query: 133 KAK-KYDRIISCEMME 147
+ +D S +
Sbjct: 103 LPQDSFDLAYSSLALH 118
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 2e-05
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
Query: 59 SLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQ 118
L+I+ A EH VL+IG G G A+ G+ + E ++ A E G+
Sbjct: 11 GLMIKTAECRAEHRVLDIGAGAGHTALAFSPYVQ-ECIGVDATKEMVEVASSFAQEKGV- 68
Query: 119 DHIRLYLCDYRQLP 132
+++R LP
Sbjct: 69 ENVRFQQGTAESLP 82
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} Length = 480 | Back alignment and structure |
|---|
Score = 44.7 bits (105), Expect = 2e-05
Identities = 37/185 (20%), Positives = 70/185 (37%), Gaps = 14/185 (7%)
Query: 33 QAHRNISYHYDLDEDEDLKVAQMRKHSLLIEKARVS-KEHEVLEIGCGWGTFAIEVVRQT 91
Q + +S ++ +D + + I + K+ VL++GCG G + +
Sbjct: 125 QFYGYLSQQQNMMQDY----VRTGTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQA- 179
Query: 92 GCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMMEAVG- 150
G ++ ++AE+ V L D I + ++ ++ D IIS E M +
Sbjct: 180 GARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQVDIIIS-EPMGYMLF 238
Query: 151 HEYMEEYFGCCESLLAKDGLLVLQFSS------TPDARYNEYRLSSDFIKEYIFPGGCLP 204
+E M E + + L G + T + Y E ++F + F G L
Sbjct: 239 NERMLESYLHAKKYLKPSGNMFPTIGDVHLAPFTDEQLYMEQFTKANFWYQPSFHGVDLS 298
Query: 205 SLSRI 209
+L
Sbjct: 299 ALRGA 303
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Length = 279 | Back alignment and structure |
|---|
Score = 44.4 bits (105), Expect = 2e-05
Identities = 28/135 (20%), Positives = 44/135 (32%), Gaps = 14/135 (10%)
Query: 41 HYDLDEDEDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITL 100
Y V Q + L++ +L++GCG G E + Q+G G
Sbjct: 34 LYQDKHSF---VWQYGED--LLQLLNPQPGEFILDLGCGTGQLT-EKIAQSGAEVLGTDN 87
Query: 101 SAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMMEAVGHEYMEEYFGC 160
+A ++ A H+ + D R K D + S M+ V E
Sbjct: 88 AATMIEKARQN------YPHLHFDVADARNFRVDKPLDAVFSNAMLHWVKE--PEAAIAS 139
Query: 161 CESLLAKDGLLVLQF 175
L G V +F
Sbjct: 140 IHQALKSGGRFVAEF 154
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 2e-05
Identities = 31/172 (18%), Positives = 70/172 (40%), Gaps = 22/172 (12%)
Query: 31 LAQAHR-NISYHYDLDEDEDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVR 89
++ AH+ + S LD+ L++ K ++++ + + VL++G G G + + +
Sbjct: 1 MSLAHKFDPSKIKKLDDPSRLELFDPEK---VLKEFGLKEGMTVLDVGTGAGFYLPYLSK 57
Query: 90 QTGCNYT--GITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAKKYDRIISCEMM 146
G I + E + YA KVN+ GL ++ + + ++P D I
Sbjct: 58 MVGEKGKVYAIDVQEEMVNYAWEKVNKLGL-KNVEVLKSEENKIPLPDNTVDFIFMAFTF 116
Query: 147 EAVGH--EYMEEYFGCCESLLAKDG-LLVLQFSST-------PDARYNEYRL 188
+ +++EE + L ++ + P+ Y+E+ +
Sbjct: 117 HELSEPLKFLEELK----RVAKPFAYLAIIDWKKEERDKGPPPEEVYSEWEV 164
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Length = 263 | Back alignment and structure |
|---|
Score = 43.8 bits (103), Expect = 2e-05
Identities = 22/102 (21%), Positives = 43/102 (42%), Gaps = 3/102 (2%)
Query: 31 LAQAHRNISYHYDLDEDEDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ 90
++ A +Y YD +VA ++ +E LE+G G G A+ ++ +
Sbjct: 1 MSSALLRAAYAYDRLRAHPPEVAGQIATAMASAVHPKGEEPVFLELGVGTGRIALPLIAR 60
Query: 91 TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP 132
G Y + A ++ K+ AG+ +++ D R +P
Sbjct: 61 -GYRYIALDADAAMLEVFRQKI--AGVDRKVQVVQADARAIP 99
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} Length = 204 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 3e-05
Identities = 20/134 (14%), Positives = 43/134 (32%), Gaps = 12/134 (8%)
Query: 44 LDEDEDLKVAQMRKH---SLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITL 100
E Q+ K +L + + + +IG G G+ ++E G I
Sbjct: 27 RPESAFAHDGQITKSPMRALTLAALAPRRGELLWDIGGGSGSVSVEWCLA-GGRAITIEP 85
Query: 101 SAEQMKYAEMKVNEAGLQDHIRLYLCD-YRQLPKAKKYDRIISCEMMEAVGHEYMEEYFG 159
A++++ + ++ GL +R L + + +G + +
Sbjct: 86 RADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPLPEAVF-------IGGGGSQALYD 138
Query: 160 CCESLLAKDGLLVL 173
LA +V
Sbjct: 139 RLWEWLAPGTRIVA 152
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A Length = 348 | Back alignment and structure |
|---|
Score = 43.8 bits (103), Expect = 3e-05
Identities = 34/156 (21%), Positives = 60/156 (38%), Gaps = 10/156 (6%)
Query: 62 IEKARVS-KEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDH 120
I + K+ VL++GCG G + + G ++ ++AE+ V L D
Sbjct: 42 ILQNHTDFKDKIVLDVGCGSGILSFFAAQA-GARKIYAVEASTMAQHAEVLVKSNNLTDR 100
Query: 121 IRLYLCDYRQLPKAKKYDRIISCEMMEAVG-HEYMEEYFGCCESLLAKDGLLVLQFSS-- 177
I + ++ ++ D IIS E M + +E M E + + L G +
Sbjct: 101 IVVIPGKVEEVSLPEQVDIIIS-EPMGYMLFNERMLESYLHAKKYLKPSGNMFPTIGDVH 159
Query: 178 ----TPDARYNEYRLSSDFIKEYIFPGGCLPSLSRI 209
T + Y E ++F + F G L +L
Sbjct: 160 LAPFTDEQLYMEQFTKANFWYQPSFHGVDLSALRGA 195
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} SCOP: c.66.1.47 PDB: 3k6r_A 3a25_A* 3a26_A* Length = 278 | Back alignment and structure |
|---|
Score = 43.0 bits (101), Expect = 4e-05
Identities = 19/107 (17%), Positives = 37/107 (34%), Gaps = 1/107 (0%)
Query: 35 HRNISYHYDLDEDEDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCN 94
H Y LD + + K + + K + V+++ G G ++ +
Sbjct: 92 HVENGIKYKLDVAKIMFSPANVKERVRMAK-VAKPDELVVDMFAGIGHLSLPIAVYGKAK 150
Query: 95 YTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRII 141
I K+ ++ ++D + Y D R P DRI+
Sbjct: 151 VIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRIL 197
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 6e-05
Identities = 30/174 (17%), Positives = 56/174 (32%), Gaps = 24/174 (13%)
Query: 47 DEDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMK 106
+ V + S L + E +EIG G G FA+ + + G+ S +
Sbjct: 25 ERWFLVHRFAYLSELQAVKCLLPEGRGVEIGVGTGRFAVPLKIK-----IGVEPSERMAE 79
Query: 107 YAEMKVNEAGLQDHIRLYLCDYRQLP-KAKKYDRIISCEMMEAVGH--EYMEEYFGCCES 163
A + + + LP K + +D + + V ++E +
Sbjct: 80 IARKR--------GVFVLKGTAENLPLKDESFDFALMVTTICFVDDPERALKEAY----R 127
Query: 164 LLAKDGLLVLQFSSTPDARYNEYRLSSDFIKEYIFPGGC-LPSLSRITSAMAAA 216
+L K G L++ D R ++ +F S + M A
Sbjct: 128 ILKKGGYLIV---GIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKA 178
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* Length = 298 | Back alignment and structure |
|---|
Score = 42.9 bits (100), Expect = 6e-05
Identities = 13/115 (11%), Positives = 34/115 (29%), Gaps = 8/115 (6%)
Query: 60 LLIEKARVSKEHEVLEIGCGWGTF-AIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQ 118
R + + IG G I + G + + + + + + G+
Sbjct: 113 NEAALGRFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGV- 171
Query: 119 DHIRLYLCDYRQLPKAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVL 173
D + + D + ++D ++ A E F + + ++
Sbjct: 172 DGVNVITGDETVIDGL-EFDVLM-----VAALAEPKRRVFRNIHRYVDTETRIIY 220
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 6e-05
Identities = 16/120 (13%), Positives = 44/120 (36%), Gaps = 11/120 (9%)
Query: 54 QMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVN 113
+ + + K+ +++ GCG G + ++ I ++ +K + K +
Sbjct: 2 SLERPEEYLPNIFEGKKGVIVDYGCGNGFYCKYLLEFAT-KLYCIDINVIALKEVKEKFD 60
Query: 114 EAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVL 173
+ L D +++P D I+ + + + + +L DG +++
Sbjct: 61 S-------VITLSDPKEIPDN-SVDFILFANSFHDM--DDKQHVISEVKRILKDDGRVII 110
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} Length = 259 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 8e-05
Identities = 13/87 (14%), Positives = 37/87 (42%), Gaps = 4/87 (4%)
Query: 60 LLIEKARVS-KEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQ 118
LL + + + ++ +++++ G G + + +T G+ + A+ V L+
Sbjct: 39 LLAKFSYLPIRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLE 98
Query: 119 DHIRLYLCDYRQLP---KAKKYDRIIS 142
D I + D +++ ++ D +
Sbjct: 99 DQIEIIEYDLKKITDLIPKERADIVTC 125
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 Length = 275 | Back alignment and structure |
|---|
Score = 41.6 bits (97), Expect = 1e-04
Identities = 16/85 (18%), Positives = 34/85 (40%), Gaps = 2/85 (2%)
Query: 59 SLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTG--CNYTGITLSAEQMKYAEMKVNEAG 116
S +I + + ++LE+G G G + ++ T + + +K A ++E
Sbjct: 100 SYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFY 159
Query: 117 LQDHIRLYLCDYRQLPKAKKYDRII 141
++R D + YD +I
Sbjct: 160 DIGNVRTSRSDIADFISDQMYDAVI 184
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* Length = 373 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 2e-04
Identities = 24/76 (31%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
Query: 69 KEHEVLEIGCGWGTFAIE-VVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCD 127
VL+ CG GT IE +R+ GI + + AEM AG+ D I+ D
Sbjct: 217 DGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGD 276
Query: 128 YRQLPK-AKKYDRIIS 142
QL + D IS
Sbjct: 277 ATQLSQYVDSVDFAIS 292
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 Length = 194 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 2e-04
Identities = 22/84 (26%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Query: 60 LLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQD 119
+L+E V K+ ++L++GCG+G I + + + T ++ +K A+ + L +
Sbjct: 43 ILVENVVVDKDDDILDLGCGYGVIGIALADEVK-STTMADINRRAIKLAKENIKLNNLDN 101
Query: 120 -HIRLYLCDYRQLPKAKKYDRIIS 142
IR+ D + K +KY++II+
Sbjct: 102 YDIRVVHSDLYENVKDRKYNKIIT 125
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* Length = 192 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 2e-04
Identities = 25/117 (21%), Positives = 45/117 (38%), Gaps = 11/117 (9%)
Query: 60 LLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQD 119
L++ A K +++GCG G +E+ + I + E + EM + GL D
Sbjct: 24 LIMCLAEPGKNDVAVDVGCGTGGVTLELAGR-VRRVYAIDRNPEAISTTEMNLQRHGLGD 82
Query: 120 HIRLYLCD-YRQLPKAKKYDRIISCEMMEAVGH--EYMEEYFGCCESLLAKDGLLVL 173
++ L D L K D + VG ++E + L G +++
Sbjct: 83 NVTLMEGDAPEALCKIPDIDIAV-------VGGSGGELQEILRIIKDKLKPGGRIIV 132
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* Length = 225 | Back alignment and structure |
|---|
Score = 40.5 bits (94), Expect = 3e-04
Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 6/75 (8%)
Query: 63 EKARVSKEHEVLEIGCGWGTFAIEVVRQTG-CNYTGITLSAEQM----KYAEMKVNEAGL 117
+ + +++G G G ++ Y GI E + K K ++ GL
Sbjct: 18 TEIIGQFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGL 77
Query: 118 QDHIRLYLCDYRQLP 132
++ + LP
Sbjct: 78 -SNVVFVIAAAESLP 91
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Length = 226 | Back alignment and structure |
|---|
Score = 40.0 bits (93), Expect = 4e-04
Identities = 17/84 (20%), Positives = 26/84 (30%), Gaps = 3/84 (3%)
Query: 34 AHRNISYHYDLDEDEDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGC 93
A Y + ++ L ++ + VLE GCG G A Q
Sbjct: 15 ARELGGYRHPWARVLSGPDPELTFDLWLSR--LLTPQTRVLEAGCGHGPDAARFGPQ-AA 71
Query: 94 NYTGITLSAEQMKYAEMKVNEAGL 117
+ S E +K A A +
Sbjct: 72 RWAAYDFSPELLKLARANAPHADV 95
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} Length = 354 | Back alignment and structure |
|---|
Score = 40.2 bits (94), Expect = 5e-04
Identities = 22/85 (25%), Positives = 33/85 (38%), Gaps = 4/85 (4%)
Query: 61 LIEKARVSKEHEVLEIGCGWGTFAIE--VVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQ 118
L+ A VL+ G GT A+E L +++ A +GL
Sbjct: 195 LLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGL- 253
Query: 119 DHIRLYLCDYRQLPK-AKKYDRIIS 142
IR D R LP+ + DRI++
Sbjct: 254 SWIRFLRADARHLPRFFPEVDRILA 278
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} Length = 218 | Back alignment and structure |
|---|
Score = 39.3 bits (91), Expect = 7e-04
Identities = 15/73 (20%), Positives = 25/73 (34%), Gaps = 6/73 (8%)
Query: 73 VLEIGCGWGTFAIEVVRQTGC-NYTGITLSAEQM----KYAEMKVNEAGLQDHIRLYLCD 127
VL++G G G +V RQ + +M A K + GL ++
Sbjct: 31 VLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGL-PNLLYLWAT 89
Query: 128 YRQLPKAKKYDRI 140
+LP +
Sbjct: 90 AERLPPLSGVGEL 102
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 Length = 317 | Back alignment and structure |
|---|
Score = 39.3 bits (92), Expect = 8e-04
Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 12/94 (12%)
Query: 52 VAQMRKHSLLIEKARVSKEHEVLEIGCGWG-TFAI--EVVRQTGCNYTGITLSAEQMKYA 108
+A +E + K VLEIG G G A+ VV + G + + S + + A
Sbjct: 64 MALF------MEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVS-VEYSRKICEIA 116
Query: 109 EMKVNEAGLQDHIRLYLCD-YRQLPKAKKYDRII 141
+ V G+ +++ D Y +P+ YD I
Sbjct: 117 KRNVERLGI-ENVIFVCGDGYYGVPEFSPYDVIF 149
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 288 | |||
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 100.0 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.98 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.97 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.92 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.92 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.88 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.88 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.87 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.86 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.86 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.86 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.83 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.83 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.82 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.82 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.82 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.82 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.81 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.81 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.81 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.81 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.8 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.8 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.79 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.79 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.79 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.78 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.78 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.78 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.78 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.78 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.77 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.77 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.77 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.77 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.77 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.77 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.77 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.77 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.76 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.76 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.76 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.76 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.76 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.76 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.76 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.75 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.75 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.75 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.75 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.75 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.75 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.75 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.74 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.74 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.74 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.74 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.74 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.74 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.74 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.74 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.73 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.73 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.73 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.73 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.73 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.73 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.73 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.73 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.73 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.72 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.72 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.72 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.72 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.72 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.72 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.71 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.71 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.71 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.71 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.71 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.71 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.71 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.7 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.7 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.7 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.7 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.69 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.69 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.69 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.69 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.69 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.69 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.69 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.69 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.69 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.68 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.68 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.68 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.68 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.68 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.67 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.67 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 99.67 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.67 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.67 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.67 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.66 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.66 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.66 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.66 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.66 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.66 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.66 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.66 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.66 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 99.66 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.65 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.65 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.65 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.65 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.65 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.64 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.64 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.64 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.64 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 99.63 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.63 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.63 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.63 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.63 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.62 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.62 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.62 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.62 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.62 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.62 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.62 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.62 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.62 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 99.62 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.62 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.61 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.61 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.61 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 99.61 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.61 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 99.61 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.61 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.6 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.6 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.6 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.6 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.6 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.6 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 99.59 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 99.59 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.59 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.59 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.59 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.58 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.58 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 99.58 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 99.58 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.58 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.57 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.57 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.57 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.57 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.57 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.57 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.56 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.56 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.56 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.56 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.56 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.56 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.55 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.55 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.55 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.55 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 99.54 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.54 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.54 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.54 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 99.54 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.53 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.53 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 99.53 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.53 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 99.53 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.52 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.52 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.52 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.52 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 99.51 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.51 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 99.5 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 99.5 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 99.5 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 99.49 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.49 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.49 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 99.48 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.48 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 99.48 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 99.48 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 99.47 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 99.47 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 99.46 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 99.46 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 99.45 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 99.45 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.45 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 99.44 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 99.44 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.44 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 99.44 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 99.44 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.44 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 99.44 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 99.43 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 99.43 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 99.43 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 99.43 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 99.43 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 99.42 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 99.42 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 99.42 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 99.42 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 99.41 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.41 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 99.41 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 99.41 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 99.4 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 99.4 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 99.4 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 99.39 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 99.39 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 99.39 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 99.38 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 99.36 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 99.35 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 99.34 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.34 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.34 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 99.34 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 99.34 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 99.33 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 99.32 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 99.3 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 99.29 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 99.27 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 99.25 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 99.24 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 99.24 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 99.23 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 99.17 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 99.16 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 99.16 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 99.15 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 99.14 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 99.14 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 99.12 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 99.1 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 99.09 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 99.08 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 99.02 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.01 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 99.01 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 98.97 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 98.96 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.95 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 98.91 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 98.9 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 98.87 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 98.85 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.83 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 98.77 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 98.77 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 98.73 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 98.72 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 98.67 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 98.56 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 98.53 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 98.52 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 98.52 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 98.39 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 98.36 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 98.35 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 98.35 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 98.32 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 98.32 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 98.3 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 98.29 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 98.22 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 98.1 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 97.89 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 97.68 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 97.62 | |
| 2uyo_A | 310 | Hypothetical protein ML2640; putative methyltransf | 97.56 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 97.53 | |
| 1rjd_A | 334 | PPM1P, carboxy methyl transferase for protein phos | 97.38 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 97.27 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 97.25 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 97.02 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 97.01 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 96.98 | |
| 3tos_A | 257 | CALS11; methyltransferase, calicheamicin, structur | 96.96 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 96.93 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 96.92 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 96.91 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 96.86 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 96.8 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 96.79 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 96.78 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 96.69 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 96.68 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 96.67 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 96.65 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 96.58 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 96.57 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 96.54 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 96.53 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 96.53 | |
| 2py6_A | 409 | Methyltransferase FKBM; YP_546752.1, structural ge | 96.51 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 96.48 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 96.46 | |
| 4eez_A | 348 | Alcohol dehydrogenase 1; site-saturation mutagenes | 96.44 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 96.44 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 96.43 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 96.42 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 96.38 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 96.37 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 96.34 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 96.33 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 96.3 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 96.29 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 96.28 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 96.26 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 96.22 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 96.14 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 96.14 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 96.1 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 96.09 | |
| 4a2c_A | 346 | Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc | 96.04 | |
| 2c7p_A | 327 | Modification methylase HHAI; DNA methyltransferase | 96.04 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 96.03 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 95.98 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 95.98 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 95.95 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 95.91 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 95.84 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 95.83 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 95.82 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 95.73 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 95.66 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 95.66 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 95.63 | |
| 3iei_A | 334 | Leucine carboxyl methyltransferase 1; LCMT-1, S-ad | 95.62 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 95.54 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 95.46 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 95.43 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 95.42 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 95.4 | |
| 3nx4_A | 324 | Putative oxidoreductase; csgid, structural genomic | 95.4 | |
| 3krt_A | 456 | Crotonyl COA reductase; structural genomics, prote | 95.37 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 95.23 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 95.03 | |
| 2vn8_A | 375 | Reticulon-4-interacting protein 1; mitochondrion, | 94.86 | |
| 2cf5_A | 357 | Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign | 94.83 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 94.82 | |
| 1zkd_A | 387 | DUF185; NESG, RPR58, structural genomics, PSI, pro | 94.75 | |
| 2qrv_A | 295 | DNA (cytosine-5)-methyltransferase 3A; DNA methylt | 94.72 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 94.54 | |
| 1tt7_A | 330 | YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st | 94.53 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 94.41 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 94.39 | |
| 3qv2_A | 327 | 5-cytosine DNA methyltransferase; DNMT2, ehmeth; H | 94.26 | |
| 1xa0_A | 328 | Putative NADPH dependent oxidoreductases; structur | 94.16 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 94.08 | |
| 3gqv_A | 371 | Enoyl reductase; medium-chain reductase (MDR super | 94.04 | |
| 4h0n_A | 333 | DNMT2; SAH binding, transferase; HET: SAH; 2.71A { | 94.01 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 93.81 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 93.76 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 93.7 | |
| 1zsy_A | 357 | Mitochondrial 2-enoyl thioester reductase; medium- | 93.63 | |
| 3ubt_Y | 331 | Modification methylase HAEIII; protein-DNA complex | 93.38 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 93.23 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 93.16 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 92.83 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 92.71 | |
| 3pi7_A | 349 | NADH oxidoreductase; groes-like fold, NAD(P)-bindi | 92.68 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 92.65 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 92.63 | |
| 1gu7_A | 364 | Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s | 92.36 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 92.31 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 91.98 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 91.96 | |
| 3ce6_A | 494 | Adenosylhomocysteinase; protein-substrate complex, | 91.94 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 91.72 | |
| 4f3n_A | 432 | Uncharacterized ACR, COG1565 superfamily; structur | 91.64 | |
| 3iht_A | 174 | S-adenosyl-L-methionine methyl transferase; YP_165 | 91.52 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 91.45 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 91.38 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 91.37 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 91.11 | |
| 4a27_A | 349 | Synaptic vesicle membrane protein VAT-1 homolog-L; | 90.97 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 90.95 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 90.85 | |
| 1h2b_A | 359 | Alcohol dehydrogenase; oxidoreductase, archaea, hy | 90.57 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 90.53 | |
| 2f1k_A | 279 | Prephenate dehydrogenase; tyrosine synthesis, X-RA | 90.51 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 89.85 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 89.78 | |
| 2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 89.35 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 89.18 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 89.1 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 89.03 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 88.93 | |
| 3ado_A | 319 | Lambda-crystallin; L-gulonate 3-dehydrogenase, str | 88.71 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 88.69 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 88.63 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 88.6 | |
| 3me5_A | 482 | Cytosine-specific methyltransferase; structural ge | 88.58 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 88.31 | |
| 3ek2_A | 271 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 88.26 | |
| 1wma_A | 276 | Carbonyl reductase [NADPH] 1; oxidoreductase; HET: | 88.15 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 88.0 | |
| 3r3s_A | 294 | Oxidoreductase; structural genomics, csgid, center | 87.99 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 87.93 | |
| 3v2g_A | 271 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 87.88 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 87.84 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 87.8 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 87.64 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 87.3 | |
| 2ae2_A | 260 | Protein (tropinone reductase-II); oxidoreductase, | 87.21 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 87.17 | |
| 3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 86.84 | |
| 3gvp_A | 435 | Adenosylhomocysteinase 3; protein CO-factor comple | 86.81 | |
| 3is3_A | 270 | 17BETA-hydroxysteroid dehydrogenase; short chain d | 86.73 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 86.5 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 86.31 | |
| 3k31_A | 296 | Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI | 85.24 | |
| 3hwr_A | 318 | 2-dehydropantoate 2-reductase; YP_299159.1, PANE/A | 85.13 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 85.02 | |
| 3b1f_A | 290 | Putative prephenate dehydrogenase; enzyme, 4-hydro | 84.76 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 83.99 | |
| 3t4x_A | 267 | Oxidoreductase, short chain dehydrogenase/reducta; | 83.72 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 83.71 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 83.68 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 83.63 | |
| 4hp8_A | 247 | 2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi | 83.63 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 83.62 | |
| 3swr_A | 1002 | DNA (cytosine-5)-methyltransferase 1; epigenetics, | 83.61 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 83.56 | |
| 2hwk_A | 320 | Helicase NSP2; rossman fold, alpha/beta/alpha, mul | 83.42 | |
| 3zwc_A | 742 | Peroxisomal bifunctional enzyme; beta oxidation pa | 83.29 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 83.26 | |
| 3k96_A | 356 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA | 83.25 | |
| 4ezb_A | 317 | Uncharacterized conserved protein; structural geno | 83.2 | |
| 1xkq_A | 280 | Short-chain reductase family member (5D234); parra | 83.12 | |
| 1xg5_A | 279 | ARPG836; short chain dehydrogenase, human, SGC, st | 83.11 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 83.08 | |
| 1yxm_A | 303 | Pecra, peroxisomal trans 2-enoyl COA reductase; pe | 82.85 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 82.74 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 82.62 | |
| 3ksu_A | 262 | 3-oxoacyl-acyl carrier protein reductase; structur | 82.58 | |
| 3n58_A | 464 | Adenosylhomocysteinase; ssgcid, hydrolase, structu | 82.48 | |
| 3h7a_A | 252 | Short chain dehydrogenase; oxidoreductase, PSI-2, | 82.32 | |
| 1lnq_A | 336 | MTHK channels, potassium channel related protein; | 82.25 | |
| 3rkr_A | 262 | Short chain oxidoreductase; rossmann fold; HET: NA | 82.2 | |
| 1g0o_A | 283 | Trihydroxynaphthalene reductase; protein-NADPH-act | 81.94 | |
| 1xhl_A | 297 | Short-chain dehydrogenase/reductase family member | 81.85 | |
| 3slk_A | 795 | Polyketide synthase extender module 2; rossmann fo | 81.26 | |
| 1zej_A | 293 | HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural | 81.17 | |
| 3k6j_A | 460 | Protein F01G10.3, confirmed by transcript evidenc; | 81.16 | |
| 3sju_A | 279 | Keto reductase; short-chain dehydrogenase, oxidore | 80.91 | |
| 1yb1_A | 272 | 17-beta-hydroxysteroid dehydrogenase type XI; shor | 80.87 | |
| 3gaf_A | 256 | 7-alpha-hydroxysteroid dehydrogenase; seattle stru | 80.83 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 80.57 | |
| 3mog_A | 483 | Probable 3-hydroxybutyryl-COA dehydrogenase; struc | 80.46 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 80.35 | |
| 2cvz_A | 289 | Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; | 80.31 | |
| 2cfc_A | 250 | 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor | 80.27 | |
| 3awd_A | 260 | GOX2181, putative polyol dehydrogenase; oxidoreduc | 80.21 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 80.21 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 80.17 |
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-33 Score=244.83 Aligned_cols=210 Identities=25% Similarity=0.378 Sum_probs=183.9
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEc
Q 048309 47 DEDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLC 126 (288)
Q Consensus 47 ~~~l~~a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~ 126 (288)
..++.+++.+++..+++.+.+.++.+|||||||+|.++..+++..+.+|+|+|+|+.+++.|++++...+++++++++.+
T Consensus 50 ~~~l~~a~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~ 129 (302)
T 3hem_A 50 DMTLEEAQYAKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQ 129 (302)
T ss_dssp TCCHHHHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEEC
T ss_pred CCCHHHHHHHHHHHHHHHcCCCCcCEEEEeeccCcHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEC
Confidence 46789999999999999999999999999999999999999987458999999999999999999999999778999999
Q ss_pred ccCCCCCCCCCCEEEEccchhhh-------CHhhHHHHHHHHhcccccCcEEEEEeecCCCcccccccC---------ch
Q 048309 127 DYRQLPKAKKYDRIISCEMMEAV-------GHEYMEEYFGCCESLLAKDGLLVLQFSSTPDARYNEYRL---------SS 190 (288)
Q Consensus 127 d~~~~~~~~~fD~I~~~~~l~~~-------~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~---------~~ 190 (288)
|+.++ +++||+|++..+++|+ +.++...+++++.++|||||++++.++..+......... ..
T Consensus 130 d~~~~--~~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (302)
T 3hem_A 130 GWEEF--DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFI 207 (302)
T ss_dssp CGGGC--CCCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHH
T ss_pred CHHHc--CCCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEeccCccchhhccccccccccchH
Confidence 99987 5899999999999999 446778999999999999999999998876543222111 12
Q ss_pred hhHhhhccCCCCCCCHHHHHHHHHHcCCh---------------------------HHHHhhcCChHHHHHHHHHHHHHH
Q 048309 191 DFIKEYIFPGGCLPSLSRITSAMAAASSL---------------------------SKILALGFNEKFIWTWEYYFDYSA 243 (288)
Q Consensus 191 ~~~~~~i~~~~~~p~~~~~~~~~~~~~~~---------------------------~~~~~~gf~~~~~~~w~~~~~~~~ 243 (288)
.|+.++++|++.+|+..++.+.++++ || ..+.+. |++.+.++|++|+..|+
T Consensus 208 ~~~~~~~~p~~~~~s~~~~~~~l~~a-Gf~~~~~~~~~~~y~~tl~~w~~~~~~~~~~~~~~-~~~~~~~~w~~yl~~~~ 285 (302)
T 3hem_A 208 KFILTEIFPGGRLPRISQVDYYSSNA-GWKVERYHRIGANYVPTLNAWADALQAHKDEAIAL-KGQETCDIYMHYLRGCS 285 (302)
T ss_dssp HHHHHHTCTTCCCCCHHHHHHHHHHH-TCEEEEEEECGGGHHHHHHHHHHHHHHTHHHHHHH-HCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCCCCHHHHHHHHHhC-CcEEEEEEeCchhHHHHHHHHHHHHHHhHHHHHHH-hCHHHHHHHHHHHHHHH
Confidence 78899999999999999999888876 44 333344 78899999999999999
Q ss_pred hhcccCCccEEEEEEEc
Q 048309 244 AGFKPRTLGNYQIVLSR 260 (288)
Q Consensus 244 ~~f~~g~~~~~~~~~~k 260 (288)
++|+.|.++.+|+++.|
T Consensus 286 ~~f~~~~~~~~q~~~~~ 302 (302)
T 3hem_A 286 DLFRDKYTDVCQFTLVK 302 (302)
T ss_dssp HHHHTTSSEEEEEEEEC
T ss_pred HHHhCCCCeEEEEEEEC
Confidence 99999999999999986
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=2.7e-30 Score=229.93 Aligned_cols=244 Identities=25% Similarity=0.363 Sum_probs=188.6
Q ss_pred hhHHHHHhhhh----hcCChHHHHHhhhhhcCCC---------------------CCCCHHHHHHHHHHHHHHHcCCCCC
Q 048309 16 NQKSYFLRHIS----RKNSLAQAHRNISYHYDLD---------------------EDEDLKVAQMRKHSLLIEKARVSKE 70 (288)
Q Consensus 16 ~~~~~~~~~~~----~~~~~~~~~~~~a~~Yd~~---------------------~~~~l~~a~~~~~~~l~~~~~~~~~ 70 (288)
++++..+.|.- +.++....+++++.+||.. ...++.+++.+.+..+++.+.+.++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Yd~~~~~~~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 91 (318)
T 2fk8_A 12 SGLVPRGSHMAEKPISPTKTRTRFEDIQAHYDVSDDFFALFQDPTRTYSCAYFEPPELTLEEAQYAKVDLNLDKLDLKPG 91 (318)
T ss_dssp --------------------------CGGGGCCCHHHHTTTSCTTCCCSCCCCSSTTCCHHHHHHHHHHHHHTTSCCCTT
T ss_pred hhHHHHHHHHhhhhcccCChhhhHHHHHHhcCCCHHHHHHHcCCCCCcceeeeCCCCCCHHHHHHHHHHHHHHhcCCCCc
Confidence 34444444454 7788888999999999954 2347788999999999999998899
Q ss_pred CEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCEEEEccchhhhC
Q 048309 71 HEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMMEAVG 150 (288)
Q Consensus 71 ~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~~~~~l~~~~ 150 (288)
.+|||||||+|.++..+++..+++|+|+|+|+.+++.+++++...++..+++++++|+.+++ ++||+|++..+++|++
T Consensus 92 ~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~fD~v~~~~~l~~~~ 169 (318)
T 2fk8_A 92 MTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA--EPVDRIVSIEAFEHFG 169 (318)
T ss_dssp CEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC--CCCSEEEEESCGGGTC
T ss_pred CEEEEEcccchHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCC--CCcCEEEEeChHHhcC
Confidence 99999999999999999986577999999999999999999998888778999999998875 7899999999999998
Q ss_pred HhhHHHHHHHHhcccccCcEEEEEeecCCCcccccc---------cCchhhHhhhccCCCCCCCHHHHHHHHHHcCCh--
Q 048309 151 HEYMEEYFGCCESLLAKDGLLVLQFSSTPDARYNEY---------RLSSDFIKEYIFPGGCLPSLSRITSAMAAASSL-- 219 (288)
Q Consensus 151 ~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~---------~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~-- 219 (288)
.+++..+++++.++|||||++++.++..+....... .....++..+++|++.+|+..++.+.++++ ||
T Consensus 170 ~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~a-Gf~~ 248 (318)
T 2fk8_A 170 HENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPSTEMMVEHGEKA-GFTV 248 (318)
T ss_dssp GGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCCCHHHHHHHHHHT-TCBC
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEEeccCCchhhhhccccccccccchhhHHHHhcCCCCcCCCHHHHHHHHHhC-CCEE
Confidence 788999999999999999999999888665322110 112356778889989999999999888876 44
Q ss_pred -------------------------HHHHhhcCChHHHHHHHHHHHHHHhhcccCCccEEEEEEEcCCC
Q 048309 220 -------------------------SKILALGFNEKFIWTWEYYFDYSAAGFKPRTLGNYQIVLSRPGN 263 (288)
Q Consensus 220 -------------------------~~~~~~gf~~~~~~~w~~~~~~~~~~f~~g~~~~~~~~~~k~~~ 263 (288)
..+.. .+++.+.++|..|+..|+++|+.|.++.+|++++||+.
T Consensus 249 ~~~~~~~~~y~~~~~~w~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~f~~g~~~~~~~~~~k~~~ 316 (318)
T 2fk8_A 249 PEPLSLRPHYIKTLRIWGDTLQSNKDKAIE-VTSEEVYNRYMKYLRGCEHYFTDEMLDCSLVTYLKPGA 316 (318)
T ss_dssp CCCEECHHHHHHHHHHHHHHHHHTHHHHHH-HSCHHHHHHHHHHHHHHHHHHHTTSCEEEEEEEECTTC
T ss_pred EEEEecchhHHHHHHHHHHHHHHHHHHHHH-hcChHHHHHHHHHHHHHHHHHHCCCCeEEEEEEEeCCC
Confidence 12222 25678899999999999999999999999999999853
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.2e-30 Score=226.04 Aligned_cols=211 Identities=27% Similarity=0.431 Sum_probs=179.5
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEE
Q 048309 46 EDEDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYL 125 (288)
Q Consensus 46 ~~~~l~~a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~ 125 (288)
...++.+++.+.+..+++.+.+.++.+|||||||+|.++..+++..+.+|+|+|+|+.+++.+++++...++..+++++.
T Consensus 41 ~~~~l~~a~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~ 120 (287)
T 1kpg_A 41 DDMTLQEAQIAKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLL 120 (287)
T ss_dssp TTCCHHHHHHHHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEE
Confidence 34678899999999999999989999999999999999999996657799999999999999999999888877899999
Q ss_pred cccCCCCCCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCCCcccc---------cccCchhhHhhh
Q 048309 126 CDYRQLPKAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPDARYN---------EYRLSSDFIKEY 196 (288)
Q Consensus 126 ~d~~~~~~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~---------~~~~~~~~~~~~ 196 (288)
+|+.+++ ++||+|++..+++|++++++..+++++.++|||||.+++.++..+..... .......++..+
T Consensus 121 ~d~~~~~--~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (287)
T 1kpg_A 121 AGWEQFD--EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTE 198 (287)
T ss_dssp SCGGGCC--CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHH
T ss_pred CChhhCC--CCeeEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEecCCCccccccccccccccccchhhhHHhe
Confidence 9998876 89999999999999987789999999999999999999998876543221 011234567788
Q ss_pred ccCCCCCCCHHHHHHHHHHcCCh---------------------------HHHHhhcCChHHHHHHHHHHHHHHhhcccC
Q 048309 197 IFPGGCLPSLSRITSAMAAASSL---------------------------SKILALGFNEKFIWTWEYYFDYSAAGFKPR 249 (288)
Q Consensus 197 i~~~~~~p~~~~~~~~~~~~~~~---------------------------~~~~~~gf~~~~~~~w~~~~~~~~~~f~~g 249 (288)
++|++.+|+..++.+.++++ || +.+.+. +.+.+.+.|.+|+..|+++|+.|
T Consensus 199 ~~~~~~~~s~~~~~~~l~~a-Gf~~~~~~~~~~~y~~~~~~w~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~f~~g 276 (287)
T 1kpg_A 199 IFPGGRLPSIPMVQECASAN-GFTVTRVQSLQPHYAKTLDLWSAALQANKGQAIAL-QSEEVYERYMKYLTGCAEMFRIG 276 (287)
T ss_dssp TSTTCCCCCHHHHHHHHHTT-TCEEEEEEECHHHHHHHHHHHHHHHHHTHHHHHHH-SCHHHHHHHHHHHHHHHHHHHTT
T ss_pred eCCCCCCCCHHHHHHHHHhC-CcEEEEEEeCcHhHHHHHHHHHHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999888776 44 223333 45667788999999999999999
Q ss_pred CccEEEEEEEc
Q 048309 250 TLGNYQIVLSR 260 (288)
Q Consensus 250 ~~~~~~~~~~k 260 (288)
.++.+|++++|
T Consensus 277 ~~~~~~~~~~k 287 (287)
T 1kpg_A 277 YIDVNQFTCQK 287 (287)
T ss_dssp SEEEEEEEEEC
T ss_pred CCeEEEEEEEC
Confidence 99999999986
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.92 E-value=8.9e-24 Score=185.81 Aligned_cols=209 Identities=18% Similarity=0.248 Sum_probs=167.6
Q ss_pred CCCHHHHHHHHHHHHHHHc----CCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceE
Q 048309 47 DEDLKVAQMRKHSLLIEKA----RVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIR 122 (288)
Q Consensus 47 ~~~l~~a~~~~~~~l~~~~----~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~ 122 (288)
...+..++.+....+++.+ .+.++.+|||||||+|.++..+++..+.+|+|+|+|+.+++.++++....+++.+++
T Consensus 56 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~ 135 (297)
T 2o57_A 56 QDEIREASLRTDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNIT 135 (297)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEE
T ss_pred CcchHHHHHHHHHHHHHHhhhccCCCCCCEEEEeCCCCCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCCCcceE
Confidence 4578889999999999999 888899999999999999999998756799999999999999999999888877899
Q ss_pred EEEcccCCCC-CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCCCcccccccCchhhHhhhccCCC
Q 048309 123 LYLCDYRQLP-KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPDARYNEYRLSSDFIKEYIFPGG 201 (288)
Q Consensus 123 ~~~~d~~~~~-~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 201 (288)
++++|+.+++ ++++||+|++..+++|+ .++..+++++.++|||||.+++.+...+...... ....+...+..+
T Consensus 136 ~~~~d~~~~~~~~~~fD~v~~~~~l~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~--~~~~~~~~~~~~-- 209 (297)
T 2o57_A 136 VKYGSFLEIPCEDNSYDFIWSQDAFLHS--PDKLKVFQECARVLKPRGVMAITDPMKEDGIDKS--SIQPILDRIKLH-- 209 (297)
T ss_dssp EEECCTTSCSSCTTCEEEEEEESCGGGC--SCHHHHHHHHHHHEEEEEEEEEEEEEECTTCCGG--GGHHHHHHHTCS--
T ss_pred EEEcCcccCCCCCCCEeEEEecchhhhc--CCHHHHHHHHHHHcCCCeEEEEEEeccCCCCchH--HHHHHHHHhcCC--
Confidence 9999999988 67899999999999999 5689999999999999999999887654322111 122333333332
Q ss_pred CCCCHHHHHHHHHHcCCh--------------------HHHH------hhcCChHHHHHHHHHHHHHHhhcccCCccEEE
Q 048309 202 CLPSLSRITSAMAAASSL--------------------SKIL------ALGFNEKFIWTWEYYFDYSAAGFKPRTLGNYQ 255 (288)
Q Consensus 202 ~~p~~~~~~~~~~~~~~~--------------------~~~~------~~gf~~~~~~~w~~~~~~~~~~f~~g~~~~~~ 255 (288)
..++..++.+.+.++ || ..+. ...++..+.+.|...+..+...+..|.++..+
T Consensus 210 ~~~~~~~~~~~l~~a-Gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 288 (297)
T 2o57_A 210 DMGSLGLYRSLAKEC-GLVTLRTFSRPDSLVHHYSKVKAELIKRSSEIASFCSPEFQANMKRGLEHWIEGGRAGKLTWGG 288 (297)
T ss_dssp SCCCHHHHHHHHHHT-TEEEEEEEECHHHHHHHHHHHHHHHHHTHHHHTTTSCHHHHHHHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCHHHHHHHHHHC-CCeEEEEEECchhhHHHHHHHHHHHHHhHHHHhccCCHHHHHHHHHHHHHHHHhccCCeEEEEE
Confidence 355677777766665 44 1111 12356677888888888788889999999999
Q ss_pred EEEEcCC
Q 048309 256 IVLSRPG 262 (288)
Q Consensus 256 ~~~~k~~ 262 (288)
++++||.
T Consensus 289 ~~a~Kp~ 295 (297)
T 2o57_A 289 MLFRKSD 295 (297)
T ss_dssp EEEEESS
T ss_pred EEEECCC
Confidence 9999985
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.2e-23 Score=182.68 Aligned_cols=168 Identities=19% Similarity=0.224 Sum_probs=137.7
Q ss_pred CCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcc
Q 048309 48 EDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCD 127 (288)
Q Consensus 48 ~~l~~a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d 127 (288)
.++.+++.+....+++.+.+.++.+|||||||+|.++..+++..+++|+|+|+|+.+++.+++++...+++++++++.+|
T Consensus 40 ~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d 119 (273)
T 3bus_A 40 VSVDDATDRLTDEMIALLDVRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYAD 119 (273)
T ss_dssp CCHHHHHHHHHHHHHHHSCCCTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECC
T ss_pred cCHHHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECc
Confidence 47888999999999999998899999999999999999999866789999999999999999999998887789999999
Q ss_pred cCCCC-CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCCCcccccccCchhhHhhhccCCCCCCCH
Q 048309 128 YRQLP-KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPDARYNEYRLSSDFIKEYIFPGGCLPSL 206 (288)
Q Consensus 128 ~~~~~-~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~ 206 (288)
+.+++ ++++||+|++..+++|+ .+...+++++.++|||||++++.++................+. ..++....++.
T Consensus 120 ~~~~~~~~~~fD~v~~~~~l~~~--~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 196 (273)
T 3bus_A 120 AMDLPFEDASFDAVWALESLHHM--PDRGRALREMARVLRPGGTVAIADFVLLAPVEGAKKEAVDAFR-AGGGVLSLGGI 196 (273)
T ss_dssp TTSCCSCTTCEEEEEEESCTTTS--SCHHHHHHHHHTTEEEEEEEEEEEEEESSCCCHHHHHHHHHHH-HHHTCCCCCCH
T ss_pred cccCCCCCCCccEEEEechhhhC--CCHHHHHHHHHHHcCCCeEEEEEEeeccCCCChhHHHHHHHHH-hhcCccCCCCH
Confidence 99988 66899999999999999 6779999999999999999999887654322111100001111 12345667888
Q ss_pred HHHHHHHHHcCCh
Q 048309 207 SRITSAMAAASSL 219 (288)
Q Consensus 207 ~~~~~~~~~~~~~ 219 (288)
.++.+.++++ ||
T Consensus 197 ~~~~~~l~~a-Gf 208 (273)
T 3bus_A 197 DEYESDVRQA-EL 208 (273)
T ss_dssp HHHHHHHHHT-TC
T ss_pred HHHHHHHHHc-CC
Confidence 8888887776 44
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.88 E-value=8e-22 Score=172.38 Aligned_cols=228 Identities=14% Similarity=0.151 Sum_probs=158.2
Q ss_pred hHHHHHhhhhhcCCCCCCCHHHHH-----HHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHH
Q 048309 31 LAQAHRNISYHYDLDEDEDLKVAQ-----MRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQM 105 (288)
Q Consensus 31 ~~~~~~~~a~~Yd~~~~~~l~~a~-----~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~ 105 (288)
....|+.++..|+........... .+.+..+++.+... +.+|||||||+|.++..+++. +.+|+|+|+|+.++
T Consensus 26 ~~~~fd~~a~~y~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~ 103 (285)
T 4htf_A 26 QDRNFDDIAEKFSRNIYGTTKGQLRQAILWQDLDRVLAEMGPQ-KLRVLDAGGGEGQTAIKMAER-GHQVILCDLSAQMI 103 (285)
T ss_dssp ------CHHHHHHSCTTSCHHHHHHHHHHHHHHHHHHHHTCSS-CCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHH
T ss_pred cccchhhHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhcCCC-CCEEEEeCCcchHHHHHHHHC-CCEEEEEECCHHHH
Confidence 345677788888755333332211 12245566666644 679999999999999999987 78999999999999
Q ss_pred HHHHHHHHHcCCCCceEEEEcccCCCC--CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCCCccc
Q 048309 106 KYAEMKVNEAGLQDHIRLYLCDYRQLP--KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPDARY 183 (288)
Q Consensus 106 ~~a~~~~~~~g~~~~v~~~~~d~~~~~--~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~ 183 (288)
+.|++++...+++.+++++++|+.+++ .+++||+|++..+++|+ .++..+++++.++|||||.+++.+........
T Consensus 104 ~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~ 181 (285)
T 4htf_A 104 DRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPVDLILFHAVLEWV--ADPRSVLQTLWSVLRPGGVLSLMFYNAHGLLM 181 (285)
T ss_dssp HHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSCEEEEEEESCGGGC--SCHHHHHHHHHHTEEEEEEEEEEEEBHHHHHH
T ss_pred HHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCCceEEEECchhhcc--cCHHHHHHHHHHHcCCCeEEEEEEeCCchHHH
Confidence 999999998888778999999999987 67899999999999999 67899999999999999999998765332111
Q ss_pred ccc-cCchhhHhhhc-------cCCCCCCCHHHHHHHHHHcCChHHHHhhcC-------------ChHHHHHHHHHHHHH
Q 048309 184 NEY-RLSSDFIKEYI-------FPGGCLPSLSRITSAMAAASSLSKILALGF-------------NEKFIWTWEYYFDYS 242 (288)
Q Consensus 184 ~~~-~~~~~~~~~~i-------~~~~~~p~~~~~~~~~~~~~~~~~~~~~gf-------------~~~~~~~w~~~~~~~ 242 (288)
... ......+.... .......+..++.+.++++ ||+.+...++ ...+.+++......|
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~a-Gf~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~ 260 (285)
T 4htf_A 182 HNMVAGNFDYVQAGMPKKKKRTLSPDYPRDPTQVYLWLEEA-GWQIMGKTGVRVFHDYLREKHQQRDCYEALLELETRYC 260 (285)
T ss_dssp HHHHTTCHHHHHTTCCCC----CCCSCCBCHHHHHHHHHHT-TCEEEEEEEESSSGGGCSSTTHHHHTHHHHHHHHHHHT
T ss_pred HHHHhcCHHHHhhhccccccccCCCCCCCCHHHHHHHHHHC-CCceeeeeeEEEeeecccccccCcccHHHHHHHHHHhc
Confidence 100 00001111111 1112345677888777776 5532211111 012456777788888
Q ss_pred HhhcccCCccEEEEEEEcCCC
Q 048309 243 AAGFKPRTLGNYQIVLSRPGN 263 (288)
Q Consensus 243 ~~~f~~g~~~~~~~~~~k~~~ 263 (288)
......+....++++++||..
T Consensus 261 ~~~~~~~~~~~~~~varK~~~ 281 (285)
T 4htf_A 261 RQEPYITLGRYIHVTARKPQS 281 (285)
T ss_dssp TSTTGGGGCSEEEEEEECCCC
T ss_pred CCChHHHHHhheEEEEEcCCc
Confidence 888888888999999999865
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=3.7e-21 Score=165.83 Aligned_cols=195 Identities=18% Similarity=0.259 Sum_probs=146.2
Q ss_pred HHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC
Q 048309 53 AQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP 132 (288)
Q Consensus 53 a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~ 132 (288)
........+++.+.+.++.+|||||||+|.++..+++..+.+|+|+|+|+.+++.++++.... .+++++++|+.+++
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~ 115 (266)
T 3ujc_A 39 GGLEATKKILSDIELNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGN---NKIIFEANDILTKE 115 (266)
T ss_dssp THHHHHHHHTTTCCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCSC---TTEEEEECCTTTCC
T ss_pred chHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEECccccCC
Confidence 344556778888888899999999999999999999865789999999999999999886544 47999999999988
Q ss_pred -CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCCCcccccccCchhhHhhhccC-CCCCCCHHHHH
Q 048309 133 -KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPDARYNEYRLSSDFIKEYIFP-GGCLPSLSRIT 210 (288)
Q Consensus 133 -~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~p~~~~~~ 210 (288)
++++||+|++..+++|+++.++..+++++.++|||||.+++.++..+... .....+..++.+ +...++..++.
T Consensus 116 ~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 190 (266)
T 3ujc_A 116 FPENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCATEKE-----NWDDEFKEYVKQRKYTLITVEEYA 190 (266)
T ss_dssp CCTTCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEESCGG-----GCCHHHHHHHHHHTCCCCCHHHHH
T ss_pred CCCCcEEEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEeccCCcc-----cchHHHHHHHhcCCCCCCCHHHHH
Confidence 67899999999999999888999999999999999999999887655411 111122222222 23467788888
Q ss_pred HHHHHcCCh---------------------------HHHHhhcCChHHH----HHHHHHHHHHHhhcccCCccEEEEEEE
Q 048309 211 SAMAAASSL---------------------------SKILALGFNEKFI----WTWEYYFDYSAAGFKPRTLGNYQIVLS 259 (288)
Q Consensus 211 ~~~~~~~~~---------------------------~~~~~~gf~~~~~----~~w~~~~~~~~~~f~~g~~~~~~~~~~ 259 (288)
+.+.++ || +.+... +++... ..|..++..|.. |.+....++++
T Consensus 191 ~~l~~~-Gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~----g~~~w~~~~~~ 264 (266)
T 3ujc_A 191 DILTAC-NFKNVVSKDLSDYWNQLLEVEHKYLHENKEEFLKL-FSEKKFISLDDGWSRKIKDSKR----KMQRWGYFKAT 264 (266)
T ss_dssp HHHHHT-TCEEEEEEECHHHHHHHHHHHHHHHHHTHHHHHHH-SCHHHHHHHHHHHHHHHHHHHT----TSEEEEEEEEE
T ss_pred HHHHHc-CCeEEEEEeCCHHHHHHHHHHHHHHHhCHHHHHHh-cCHHHHHHHHHHHHHHHHHHHc----CcccceEEEEe
Confidence 777776 44 111111 333333 337777776664 44557778888
Q ss_pred cC
Q 048309 260 RP 261 (288)
Q Consensus 260 k~ 261 (288)
||
T Consensus 265 Kp 266 (266)
T 3ujc_A 265 KN 266 (266)
T ss_dssp CC
T ss_pred CC
Confidence 86
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=2e-21 Score=172.28 Aligned_cols=195 Identities=18% Similarity=0.233 Sum_probs=147.0
Q ss_pred HHHHHHcC-CCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CCCC
Q 048309 59 SLLIEKAR-VSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAKK 136 (288)
Q Consensus 59 ~~l~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~~ 136 (288)
..+++.+. +.++.+|||+|||+|.++..+++..+++|+|+|+++.+++.|+++++..++..+++++++|+.+++ ++++
T Consensus 106 ~~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 185 (312)
T 3vc1_A 106 EFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFDKGA 185 (312)
T ss_dssp HHHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTC
T ss_pred HHHHHHhccCCCCCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCCCCC
Confidence 45667776 778899999999999999999987578999999999999999999999998778999999999988 6789
Q ss_pred CCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCCCcccccccCchhhHhhhccCCCCCCCHHHHHHHHHHc
Q 048309 137 YDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPDARYNEYRLSSDFIKEYIFPGGCLPSLSRITSAMAAA 216 (288)
Q Consensus 137 fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~ 216 (288)
||+|++..+++|++ ...+++++.++|||||++++.+....... ........++.....+ ..++..++.+.++++
T Consensus 186 fD~V~~~~~l~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~s~~~~~~~l~~a 259 (312)
T 3vc1_A 186 VTASWNNESTMYVD---LHDLFSEHSRFLKVGGRYVTITGCWNPRY-GQPSKWVSQINAHFEC--NIHSRREYLRAMADN 259 (312)
T ss_dssp EEEEEEESCGGGSC---HHHHHHHHHHHEEEEEEEEEEEEEECTTT-CSCCHHHHHHHHHHTC--CCCBHHHHHHHHHTT
T ss_pred EeEEEECCchhhCC---HHHHHHHHHHHcCCCcEEEEEEccccccc-cchhHHHHHHHhhhcC--CCCCHHHHHHHHHHC
Confidence 99999999999993 89999999999999999999876644321 1111122334433333 367788888777665
Q ss_pred CChHHHHhhcCChHHHHHHHHHHH---------HHHhhcccCCccEEEEEEEc
Q 048309 217 SSLSKILALGFNEKFIWTWEYYFD---------YSAAGFKPRTLGNYQIVLSR 260 (288)
Q Consensus 217 ~~~~~~~~~gf~~~~~~~w~~~~~---------~~~~~f~~g~~~~~~~~~~k 260 (288)
||+.+....+.....+.|...+. ..-..|..|..+.+.++++|
T Consensus 260 -Gf~~~~~~~~~~~~~~~w~~~~~~~~~~g~~~~~~~~~~~~~~~y~~i~a~k 311 (312)
T 3vc1_A 260 -RLVPHTIVDLTPDTLPYWELRATSSLVTGIEKAFIESYRDGSFQYVLIAADR 311 (312)
T ss_dssp -TEEEEEEEECHHHHHHHHHHHTTSTTCCSCHHHHHHHHHHTSEEEEEEEEEE
T ss_pred -CCEEEEEEeCCHHHHHHHHHHHHHhhhhcChHHHHHHHHhcCCcEEEEEEee
Confidence 66444443444444555543221 12234666888888888887
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=4.6e-21 Score=165.83 Aligned_cols=124 Identities=15% Similarity=0.220 Sum_probs=107.7
Q ss_pred HHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc---cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCC
Q 048309 55 MRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ---TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQL 131 (288)
Q Consensus 55 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~---~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~ 131 (288)
.+.+..+++.. ++++.+|||||||+|..+..+++. ++++|+|+|+|+.|++.|+++++..+...+++++++|+.++
T Consensus 57 ~~~i~~l~~~~-~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~ 135 (261)
T 4gek_A 57 ISMIGMLAERF-VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDI 135 (261)
T ss_dssp HHHHHHHHHHH-CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTC
T ss_pred HHHHHHHHHHh-CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccc
Confidence 34444455543 468899999999999999999986 46799999999999999999999888877899999999998
Q ss_pred CCCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCCC
Q 048309 132 PKAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPD 180 (288)
Q Consensus 132 ~~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 180 (288)
+. ++||+|++..+++|++++++..++++++++|||||.+++.+...+.
T Consensus 136 ~~-~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~~~~ 183 (261)
T 4gek_A 136 AI-ENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFE 183 (261)
T ss_dssp CC-CSEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCS
T ss_pred cc-cccccceeeeeeeecCchhHhHHHHHHHHHcCCCcEEEEEeccCCC
Confidence 74 4699999999999998888889999999999999999998876554
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.3e-21 Score=167.92 Aligned_cols=152 Identities=16% Similarity=0.209 Sum_probs=118.7
Q ss_pred HHHHHHHHcC-CCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CC
Q 048309 57 KHSLLIEKAR-VSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KA 134 (288)
Q Consensus 57 ~~~~l~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~ 134 (288)
....+++.+. +.++.+|||||||+|.++..+++.++++|+|+|+|+.+++.++++++..+++++++++++|+.+++ ++
T Consensus 33 ~~~~~l~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 112 (267)
T 3kkz_A 33 VTLKALSFIDNLTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRN 112 (267)
T ss_dssp HHHHHHTTCCCCCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCT
T ss_pred HHHHHHHhcccCCCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCC
Confidence 3444555555 678899999999999999999988666999999999999999999999999878999999999988 67
Q ss_pred CCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCCCcccccccCchhhHhhhccCCCCCCCHHHHHHHHH
Q 048309 135 KKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPDARYNEYRLSSDFIKEYIFPGGCLPSLSRITSAMA 214 (288)
Q Consensus 135 ~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~ 214 (288)
++||+|++..+++|+ ++..+++++.++|||||++++.+......... .....++... + ..+++..++.+.+.
T Consensus 113 ~~fD~i~~~~~~~~~---~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~--~~~~~~~~~~-~--~~~~~~~~~~~~l~ 184 (267)
T 3kkz_A 113 EELDLIWSEGAIYNI---GFERGLNEWRKYLKKGGYLAVSECSWFTDERP--AEINDFWMDA-Y--PEIDTIPNQVAKIH 184 (267)
T ss_dssp TCEEEEEESSCGGGT---CHHHHHHHHGGGEEEEEEEEEEEEEESSSCCC--HHHHHHHHHH-C--TTCEEHHHHHHHHH
T ss_pred CCEEEEEEcCCceec---CHHHHHHHHHHHcCCCCEEEEEEeeecCCCCh--HHHHHHHHHh-C--CCCCCHHHHHHHHH
Confidence 899999999999998 46889999999999999999988653221110 0111112111 1 24567777777766
Q ss_pred Hc
Q 048309 215 AA 216 (288)
Q Consensus 215 ~~ 216 (288)
++
T Consensus 185 ~a 186 (267)
T 3kkz_A 185 KA 186 (267)
T ss_dssp HT
T ss_pred HC
Confidence 65
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.9e-20 Score=162.57 Aligned_cols=204 Identities=14% Similarity=0.164 Sum_probs=148.4
Q ss_pred CCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHcc--CCEEEEEcCCHH------HHHHHHHHHHHcCCCC
Q 048309 48 EDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQT--GCNYTGITLSAE------QMKYAEMKVNEAGLQD 119 (288)
Q Consensus 48 ~~l~~a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~giD~s~~------~~~~a~~~~~~~g~~~ 119 (288)
.++..++.++...+++.+.+.++.+|||||||+|.++..+++.. ..+|+|+|+|+. +++.+++++...++.+
T Consensus 22 ~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~ 101 (275)
T 3bkx_A 22 RTIQRRQTAHRLAIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGD 101 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGG
T ss_pred hHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCC
Confidence 35667888899999999999999999999999999999999873 279999999997 9999999999888767
Q ss_pred ceEEEEcc-c--CCCC-CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCCCcccccccCchh-hHh
Q 048309 120 HIRLYLCD-Y--RQLP-KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPDARYNEYRLSSD-FIK 194 (288)
Q Consensus 120 ~v~~~~~d-~--~~~~-~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~-~~~ 194 (288)
+++++++| + ..++ ++++||+|++..+++|+ .+...+++.+.++++|||.+++.++..+............ +..
T Consensus 102 ~v~~~~~d~~~~~~~~~~~~~fD~v~~~~~l~~~--~~~~~~~~~~~~l~~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~ 179 (275)
T 3bkx_A 102 RLTVHFNTNLSDDLGPIADQHFDRVVLAHSLWYF--ASANALALLFKNMAAVCDHVDVAEWSMQPTALDQIGHLQAAMIQ 179 (275)
T ss_dssp GEEEECSCCTTTCCGGGTTCCCSEEEEESCGGGS--SCHHHHHHHHHHHTTTCSEEEEEEECSSCSSGGGHHHHHHHHHH
T ss_pred ceEEEECChhhhccCCCCCCCEEEEEEccchhhC--CCHHHHHHHHHHHhCCCCEEEEEEecCCCCchhhhhHHHHHHHH
Confidence 89999998 3 3344 56899999999999999 4556677888888888999999988765432211111000 111
Q ss_pred hhc---c---CC--CCCCCHHHHHHHHHHcCCh---------------------------HHHHh-hcCChHHHHHHHHH
Q 048309 195 EYI---F---PG--GCLPSLSRITSAMAAASSL---------------------------SKILA-LGFNEKFIWTWEYY 238 (288)
Q Consensus 195 ~~i---~---~~--~~~p~~~~~~~~~~~~~~~---------------------------~~~~~-~gf~~~~~~~w~~~ 238 (288)
... . +. ...++..++.+.++++ || +.+.. .||++.+.++|..
T Consensus 180 ~~~~~~~~~~~~~~~~~~s~~~l~~~l~~a-Gf~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~g~~~~~~~~~~~- 257 (275)
T 3bkx_A 180 GLLYAIAPSDVANIRTLITPDTLAQIAHDN-TWTYTAGTIVEDPTLDDAHWEIATTNALLTELKLSTDLRDRVKPLLEA- 257 (275)
T ss_dssp HHHHHHSCCTTCSCCCCCCHHHHHHHHHHH-TCEEEECCCBCCTTCTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH-
T ss_pred HHHhhccccccccccccCCHHHHHHHHHHC-CCeeEEEEEecCCCCCCchhhHHHHHHHHHHHHhhccccHHHHHHHHH-
Confidence 110 0 11 2367888888877775 33 11111 5677888888887
Q ss_pred HHHHHhhcccCCccEEEEEEE
Q 048309 239 FDYSAAGFKPRTLGNYQIVLS 259 (288)
Q Consensus 239 ~~~~~~~f~~g~~~~~~~~~~ 259 (288)
.|+.+ ...+..+|+++.
T Consensus 258 --~~~~g--~~~~~~~~~~~~ 274 (275)
T 3bkx_A 258 --MSHNG--TASLATFTGRIT 274 (275)
T ss_dssp --HTTSC--CCCCCEEEEEEE
T ss_pred --HHhcc--ccccceeeEEEe
Confidence 34444 447788887763
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.6e-20 Score=161.93 Aligned_cols=178 Identities=14% Similarity=0.088 Sum_probs=127.0
Q ss_pred CChHHHHHhhhhhcCCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHH
Q 048309 29 NSLAQAHRNISYHYDLDEDEDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYA 108 (288)
Q Consensus 29 ~~~~~~~~~~a~~Yd~~~~~~l~~a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a 108 (288)
+.....|+.++..|....... ........+++.+.+.++.+|||||||+|.++..+++. +.+|+|+|+|+.|++.|
T Consensus 8 ~s~a~~wd~~a~~f~~~~~~~---~~~~~~~~il~~l~l~~g~~VLDlGcGtG~~a~~La~~-g~~V~gvD~S~~ml~~A 83 (261)
T 3iv6_A 8 NSKAEAWELIGNQFWTIGRVA---ARPSDRENDIFLENIVPGSTVAVIGASTRFLIEKALER-GASVTVFDFSQRMCDDL 83 (261)
T ss_dssp CTTHHHHHTTTTHHHHTSCGG---GSCCHHHHHHHTTTCCTTCEEEEECTTCHHHHHHHHHT-TCEEEEEESCHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHhhcc---ccHHHHHHHHHhcCCCCcCEEEEEeCcchHHHHHHHhc-CCEEEEEECCHHHHHHH
Confidence 344566666665554331100 00234567788888889999999999999999999986 78999999999999999
Q ss_pred HHHHHHcCCCCceEEEEcccCC--CC-CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCCC-----
Q 048309 109 EMKVNEAGLQDHIRLYLCDYRQ--LP-KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPD----- 180 (288)
Q Consensus 109 ~~~~~~~g~~~~v~~~~~d~~~--~~-~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~----- 180 (288)
++++.... +.....++.. .. .+++||+|++..+++|++.++...+++++.++| |||+++++......
T Consensus 84 r~~~~~~~----v~~~~~~~~~~~~~~~~~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~~g~~~~d~~ 158 (261)
T 3iv6_A 84 AEALADRC----VTIDLLDITAEIPKELAGHFDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRASVKLGFYDIDLK 158 (261)
T ss_dssp HHHTSSSC----CEEEECCTTSCCCGGGTTCCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEEEBSCCHHHHH
T ss_pred HHHHHhcc----ceeeeeecccccccccCCCccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEeccCcccccHH
Confidence 99875431 2222222222 11 357999999999999998788899999999999 99999997643211
Q ss_pred ------------------cccccccCchhhHhhhccCCCCCCCHHHHHHHHHHc
Q 048309 181 ------------------ARYNEYRLSSDFIKEYIFPGGCLPSLSRITSAMAAA 216 (288)
Q Consensus 181 ------------------~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~ 216 (288)
.....+.....|+.++++|++.+|+.. +++++...
T Consensus 159 ~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~p~g~~~~~~-~~~~~~~~ 211 (261)
T 3iv6_A 159 LIEYGEQSGTLAKFFDPSDKTFHFREAGDVLDRALVPHGLIDKPT-LLEWYRRR 211 (261)
T ss_dssp HHHHHHTTTCHHHHEETTTTEEEGGGTTHHHHHHCCCCTTCCHHH-HHHHHHHT
T ss_pred HHHHHHhcCCeeeeecCcccceehhhhhhHHHhccCCCCcccHHH-HHHHHHhc
Confidence 001111334679999999999999764 44455543
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.83 E-value=1.5e-19 Score=155.20 Aligned_cols=120 Identities=18% Similarity=0.176 Sum_probs=108.8
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCC
Q 048309 56 RKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAK 135 (288)
Q Consensus 56 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~ 135 (288)
..+..+++.+.+.++.+|||||||+|..+..+++..+.+|+|+|+|+.+++.++++++..++..+++++++|+.+++.++
T Consensus 23 ~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 102 (256)
T 1nkv_A 23 EKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANE 102 (256)
T ss_dssp HHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCSS
T ss_pred HHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCcCC
Confidence 45667788888889999999999999999999987677999999999999999999999888778999999999887668
Q ss_pred CCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 136 KYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 136 ~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
+||+|++..+++|+ .++..+++++.++|||||++++.+..
T Consensus 103 ~fD~V~~~~~~~~~--~~~~~~l~~~~r~LkpgG~l~~~~~~ 142 (256)
T 1nkv_A 103 KCDVAACVGATWIA--GGFAGAEELLAQSLKPGGIMLIGEPY 142 (256)
T ss_dssp CEEEEEEESCGGGT--SSSHHHHHHHTTSEEEEEEEEEEEEE
T ss_pred CCCEEEECCChHhc--CCHHHHHHHHHHHcCCCeEEEEecCc
Confidence 99999999999999 57899999999999999999997754
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.82 E-value=2e-20 Score=158.58 Aligned_cols=120 Identities=16% Similarity=0.291 Sum_probs=103.8
Q ss_pred HHHHHHHcC-CCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCC
Q 048309 58 HSLLIEKAR-VSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAK 135 (288)
Q Consensus 58 ~~~l~~~~~-~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~ 135 (288)
+..+++.+. ..++.+|||+|||+|.++..+++. ++.+++|+|+|+.+++.+++++...+ +++++++|+.+++..+
T Consensus 32 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~d~~~~~~~~ 108 (234)
T 3dtn_A 32 YGVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNL---KVKYIEADYSKYDFEE 108 (234)
T ss_dssp HHHHHHTCCCSCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCT---TEEEEESCTTTCCCCS
T ss_pred HHHHHHHhhcCCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCC---CEEEEeCchhccCCCC
Confidence 355555554 457789999999999999999987 57899999999999999999876543 7999999999988558
Q ss_pred CCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCCC
Q 048309 136 KYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPD 180 (288)
Q Consensus 136 ~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 180 (288)
+||+|++..+++|++......+++++.++|||||.+++.+...+.
T Consensus 109 ~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 153 (234)
T 3dtn_A 109 KYDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVHGE 153 (234)
T ss_dssp CEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECBCS
T ss_pred CceEEEEeCccccCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCC
Confidence 999999999999997666678999999999999999998877554
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.82 E-value=4.7e-20 Score=153.59 Aligned_cols=119 Identities=18% Similarity=0.123 Sum_probs=99.7
Q ss_pred HHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcC-----------CCCceEEEEc
Q 048309 58 HSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAG-----------LQDHIRLYLC 126 (288)
Q Consensus 58 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g-----------~~~~v~~~~~ 126 (288)
+..+++.+.+.++.+|||+|||+|..+..+++. +.+|+|+|+|+.|++.|+++..... ...+++++++
T Consensus 11 l~~~~~~l~~~~~~~vLD~GCG~G~~~~~la~~-g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 89 (203)
T 1pjz_A 11 LQQYWSSLNVVPGARVLVPLCGKSQDMSWLSGQ-GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCG 89 (203)
T ss_dssp HHHHHHHHCCCTTCEEEETTTCCSHHHHHHHHH-CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEE
T ss_pred HHHHHHhcccCCCCEEEEeCCCCcHhHHHHHHC-CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEEC
Confidence 444566677778899999999999999999987 7899999999999999998764210 0147999999
Q ss_pred ccCCCC-CC-CCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 127 DYRQLP-KA-KKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 127 d~~~~~-~~-~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
|+.+++ .+ ++||+|++..+++|++.++...+++++.++|||||++++.+..
T Consensus 90 d~~~l~~~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~~~ 142 (203)
T 1pjz_A 90 DFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLE 142 (203)
T ss_dssp CCSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEES
T ss_pred ccccCCcccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEe
Confidence 999998 43 7999999999999998778889999999999999996655443
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.6e-19 Score=155.09 Aligned_cols=154 Identities=16% Similarity=0.201 Sum_probs=119.2
Q ss_pred HHHHHHHHc-CCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CC
Q 048309 57 KHSLLIEKA-RVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KA 134 (288)
Q Consensus 57 ~~~~l~~~~-~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~ 134 (288)
....+++.+ .+.++.+|||||||+|.++..+++..+.+|+|+|+|+.+++.+++++...+++++++++++|+.+++ ++
T Consensus 33 ~~~~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 112 (257)
T 3f4k_A 33 ATRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQN 112 (257)
T ss_dssp HHHHHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCT
T ss_pred HHHHHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCC
Confidence 344455555 4667889999999999999999998445999999999999999999999999777999999999988 67
Q ss_pred CCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCCCcccccccCchhhHhhhccCCCCCCCHHHHHHHHH
Q 048309 135 KKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPDARYNEYRLSSDFIKEYIFPGGCLPSLSRITSAMA 214 (288)
Q Consensus 135 ~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~ 214 (288)
++||+|++..+++|+ ++..+++++.++|+|||++++.+......... .....++... . ..+++..++.+.+.
T Consensus 113 ~~fD~v~~~~~l~~~---~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~--~~~~~~~~~~-~--~~~~~~~~~~~~l~ 184 (257)
T 3f4k_A 113 EELDLIWSEGAIYNI---GFERGMNEWSKYLKKGGFIAVSEASWFTSERP--AEIEDFWMDA-Y--PEISVIPTCIDKME 184 (257)
T ss_dssp TCEEEEEEESCSCCC---CHHHHHHHHHTTEEEEEEEEEEEEEESSSCCC--HHHHHHHHHH-C--TTCCBHHHHHHHHH
T ss_pred CCEEEEEecChHhhc---CHHHHHHHHHHHcCCCcEEEEEEeeccCCCCh--HHHHHHHHHh-C--CCCCCHHHHHHHHH
Confidence 899999999999998 46889999999999999999988652221100 0111122221 1 23667788887776
Q ss_pred HcCCh
Q 048309 215 AASSL 219 (288)
Q Consensus 215 ~~~~~ 219 (288)
++ ||
T Consensus 185 ~a-Gf 188 (257)
T 3f4k_A 185 RA-GY 188 (257)
T ss_dssp HT-TE
T ss_pred HC-CC
Confidence 65 44
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.4e-19 Score=149.72 Aligned_cols=121 Identities=18% Similarity=0.221 Sum_probs=108.2
Q ss_pred HHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-C
Q 048309 55 MRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-K 133 (288)
Q Consensus 55 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~ 133 (288)
......+++.+...++ +|||+|||+|.++..+++.++.+++|+|+|+.+++.+++++...++..+++++++|+.+++ +
T Consensus 30 ~~~~~~~~~~~~~~~~-~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~ 108 (219)
T 3dlc_A 30 PIIAENIINRFGITAG-TCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIE 108 (219)
T ss_dssp HHHHHHHHHHHCCCEE-EEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSC
T ss_pred HHHHHHHHHhcCCCCC-EEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCC
Confidence 3455677777777666 9999999999999999987667999999999999999999999988778999999999988 6
Q ss_pred CCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecC
Q 048309 134 AKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSST 178 (288)
Q Consensus 134 ~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 178 (288)
+++||+|++..+++|+ .++..+++++.++|+|||.+++.+...
T Consensus 109 ~~~~D~v~~~~~l~~~--~~~~~~l~~~~~~L~pgG~l~~~~~~~ 151 (219)
T 3dlc_A 109 DNYADLIVSRGSVFFW--EDVATAFREIYRILKSGGKTYIGGGFG 151 (219)
T ss_dssp TTCEEEEEEESCGGGC--SCHHHHHHHHHHHEEEEEEEEEEECCS
T ss_pred cccccEEEECchHhhc--cCHHHHHHHHHHhCCCCCEEEEEeccC
Confidence 7899999999999999 788999999999999999999976443
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.81 E-value=8.8e-20 Score=153.08 Aligned_cols=142 Identities=18% Similarity=0.152 Sum_probs=101.1
Q ss_pred HHHHHhhhhhcCCCCC--CCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHH
Q 048309 32 AQAHRNISYHYDLDED--EDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAE 109 (288)
Q Consensus 32 ~~~~~~~a~~Yd~~~~--~~l~~a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~ 109 (288)
...|+.++..||.... ..........+..+++.+...++.+|||+|||+|.++..+++. +.+++|+|+|+.+++.++
T Consensus 6 ~~~f~~~a~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~ 84 (220)
T 3hnr_A 6 NGLFDEWAHTYDSFVQGEDIQYKEVFAHYEDILEDVVNKSFGNVLEFGVGTGNLTNKLLLA-GRTVYGIEPSREMRMIAK 84 (220)
T ss_dssp ------------------CCTTTTTTTTHHHHHHHHHHTCCSEEEEECCTTSHHHHHHHHT-TCEEEEECSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHHhhccCCCeEEEeCCCCCHHHHHHHhC-CCeEEEEeCCHHHHHHHH
Confidence 3457777777876421 0111111223345566665568889999999999999999986 789999999999999999
Q ss_pred HHHHHcCCCCceEEEEcccCCCCCCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCC
Q 048309 110 MKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTP 179 (288)
Q Consensus 110 ~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 179 (288)
+++. .+++++++|+.+++..++||+|++..+++|++......+++++.++|||||.+++.+...+
T Consensus 85 ~~~~-----~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 149 (220)
T 3hnr_A 85 EKLP-----KEFSITEGDFLSFEVPTSIDTIVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIFA 149 (220)
T ss_dssp HHSC-----TTCCEESCCSSSCCCCSCCSEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEECBS
T ss_pred HhCC-----CceEEEeCChhhcCCCCCeEEEEECcchhcCChHHHHHHHHHHHHhcCCCCEEEEEecccc
Confidence 8764 3689999999998844899999999999999655555699999999999999999875543
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.81 E-value=4.6e-19 Score=148.76 Aligned_cols=119 Identities=14% Similarity=0.256 Sum_probs=100.1
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCC----ceEEEEcccCCC
Q 048309 57 KHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQD----HIRLYLCDYRQL 131 (288)
Q Consensus 57 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~----~v~~~~~d~~~~ 131 (288)
....+++.+...++.+|||||||+|.++..+++. +..+|+|+|+|+.+++.+++++...+++. +++++++|+...
T Consensus 17 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~ 96 (219)
T 3jwg_A 17 RLGTVVAVLKSVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYR 96 (219)
T ss_dssp HHHHHHHHHHHTTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSC
T ss_pred HHHHHHHHHhhcCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCccccc
Confidence 3444444444457789999999999999999987 34799999999999999999988776643 799999999877
Q ss_pred C-CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 132 P-KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 132 ~-~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
+ ..++||+|++..+++|++.++...+++++.++|||||+++...
T Consensus 97 ~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~ 141 (219)
T 3jwg_A 97 DKRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTP 141 (219)
T ss_dssp CGGGTTCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEE
T ss_pred ccccCCCCEEEEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEcc
Confidence 7 5689999999999999976677899999999999999666543
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.81 E-value=9.4e-20 Score=157.02 Aligned_cols=158 Identities=16% Similarity=0.156 Sum_probs=121.3
Q ss_pred HHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC
Q 048309 53 AQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP 132 (288)
Q Consensus 53 a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~ 132 (288)
.+...+..+++.+...++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.++++++..+++ +++++++|+.+++
T Consensus 21 ~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~l~ 98 (260)
T 1vl5_A 21 AKGSDLAKLMQIAALKGNEEVLDVATGGGHVANAFAPF-VKKVVAFDLTEDILKVARAFIEGNGHQ-QVEYVQGDAEQMP 98 (260)
T ss_dssp --CCCHHHHHHHHTCCSCCEEEEETCTTCHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCC-CCC
T ss_pred cCHHHHHHHHHHhCCCCCCEEEEEeCCCCHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEecHHhCC
Confidence 44456677888888888999999999999999999886 469999999999999999999988874 7999999999988
Q ss_pred -CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCCCcccccccCchhhHhhhccC-CCCCCCHHHHH
Q 048309 133 -KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPDARYNEYRLSSDFIKEYIFP-GGCLPSLSRIT 210 (288)
Q Consensus 133 -~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~p~~~~~~ 210 (288)
++++||+|++..+++|+ .++..+++++.++|||||.+++.+...+..... ............+ .....+..++.
T Consensus 99 ~~~~~fD~V~~~~~l~~~--~d~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (260)
T 1vl5_A 99 FTDERFHIVTCRIAAHHF--PNPASFVSEAYRVLKKGGQLLLVDNSAPENDAF--DVFYNYVEKERDYSHHRAWKKSDWL 174 (260)
T ss_dssp SCTTCEEEEEEESCGGGC--SCHHHHHHHHHHHEEEEEEEEEEEEEBCSSHHH--HHHHHHHHHHHCTTCCCCCBHHHHH
T ss_pred CCCCCEEEEEEhhhhHhc--CCHHHHHHHHHHHcCCCCEEEEEEcCCCCCHHH--HHHHHHHHHhcCccccCCCCHHHHH
Confidence 67899999999999999 678899999999999999999987665443111 0001111111112 22345677777
Q ss_pred HHHHHc
Q 048309 211 SAMAAA 216 (288)
Q Consensus 211 ~~~~~~ 216 (288)
+.+.++
T Consensus 175 ~~l~~a 180 (260)
T 1vl5_A 175 KMLEEA 180 (260)
T ss_dssp HHHHHH
T ss_pred HHHHHC
Confidence 777665
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.81 E-value=4.6e-19 Score=148.64 Aligned_cols=119 Identities=14% Similarity=0.230 Sum_probs=101.1
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCC----ceEEEEcccCCC
Q 048309 57 KHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQD----HIRLYLCDYRQL 131 (288)
Q Consensus 57 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~----~v~~~~~d~~~~ 131 (288)
....+++.+...++.+|||||||+|.++..+++. +..+|+|+|+|+.+++.+++++...+++. +++++++|+...
T Consensus 17 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~ 96 (217)
T 3jwh_A 17 RMNGVVAALKQSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQ 96 (217)
T ss_dssp HHHHHHHHHHHTTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSC
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccc
Confidence 3344455555457789999999999999999987 44799999999999999999998777653 799999999877
Q ss_pred C-CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 132 P-KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 132 ~-~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
+ ..++||+|++..+++|++.++...+++++.++|||||++++..
T Consensus 97 ~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 141 (217)
T 3jwh_A 97 DKRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTP 141 (217)
T ss_dssp CGGGCSCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEE
T ss_pred cccCCCcCEEeeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 6 5689999999999999977777999999999999999777643
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.80 E-value=9.5e-19 Score=146.63 Aligned_cols=120 Identities=15% Similarity=0.207 Sum_probs=107.7
Q ss_pred HHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CC
Q 048309 58 HSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KA 134 (288)
Q Consensus 58 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~ 134 (288)
...+++.+...++.+|||+|||+|.++..+++. +..+|+|+|+|+.+++.+++++...+++ +++++++|+.+++ ++
T Consensus 26 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~ 104 (219)
T 3dh0_A 26 PEKVLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLK-NVEVLKSEENKIPLPD 104 (219)
T ss_dssp HHHHHHHHTCCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCT-TEEEEECBTTBCSSCS
T ss_pred HHHHHHHhCCCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEecccccCCCCC
Confidence 356777778888999999999999999999987 3479999999999999999999988885 8999999999987 67
Q ss_pred CCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCCC
Q 048309 135 KKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPD 180 (288)
Q Consensus 135 ~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 180 (288)
++||+|++..+++|+ .+...+++++.++|+|||.+++.++....
T Consensus 105 ~~fD~v~~~~~l~~~--~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 148 (219)
T 3dh0_A 105 NTVDFIFMAFTFHEL--SEPLKFLEELKRVAKPFAYLAIIDWKKEE 148 (219)
T ss_dssp SCEEEEEEESCGGGC--SSHHHHHHHHHHHEEEEEEEEEEEECSSC
T ss_pred CCeeEEEeehhhhhc--CCHHHHHHHHHHHhCCCeEEEEEEecccc
Confidence 899999999999999 67899999999999999999998876554
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=4.8e-19 Score=148.02 Aligned_cols=139 Identities=18% Similarity=0.225 Sum_probs=111.5
Q ss_pred HHHHHhhhhhcCCCCCCCHHHHHHHHHHHHHHHcC-CCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHH
Q 048309 32 AQAHRNISYHYDLDEDEDLKVAQMRKHSLLIEKAR-VSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEM 110 (288)
Q Consensus 32 ~~~~~~~a~~Yd~~~~~~l~~a~~~~~~~l~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~ 110 (288)
...|+..+..|+.. ...........+++.+. ..++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.+++
T Consensus 12 ~~~~~~~a~~y~~~----~~~~~~~~~~~~~~~l~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~~ 86 (218)
T 3ou2_A 12 LSYYRARASEYDAT----FVPYMDSAAPAALERLRAGNIRGDVLELASGTGYWTRHLSGL-ADRVTALDGSAEMIAEAGR 86 (218)
T ss_dssp HHHHHHHGGGHHHH----HHHHHTTTHHHHHHHHTTTTSCSEEEEESCTTSHHHHHHHHH-SSEEEEEESCHHHHHHHGG
T ss_pred HHHHHHHHHHHHHh----hhhHHHHHHHHHHHHHhcCCCCCeEEEECCCCCHHHHHHHhc-CCeEEEEeCCHHHHHHHHh
Confidence 34566666666641 22222222445666654 567789999999999999999987 7899999999999999987
Q ss_pred HHHHcCCCCceEEEEcccCCCCCCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCCC
Q 048309 111 KVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPD 180 (288)
Q Consensus 111 ~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 180 (288)
.+. .+++++++|+.++.++++||+|++..+++|++.+....+++++.++|+|||.+++.+...+.
T Consensus 87 ----~~~-~~~~~~~~d~~~~~~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~ 151 (218)
T 3ou2_A 87 ----HGL-DNVEFRQQDLFDWTPDRQWDAVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTDHE 151 (218)
T ss_dssp ----GCC-TTEEEEECCTTSCCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCCC
T ss_pred ----cCC-CCeEEEecccccCCCCCceeEEEEechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCc
Confidence 454 47999999999886678999999999999997666799999999999999999999887643
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=2.1e-18 Score=146.87 Aligned_cols=156 Identities=21% Similarity=0.248 Sum_probs=120.8
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CCC
Q 048309 57 KHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAK 135 (288)
Q Consensus 57 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~ 135 (288)
....+++.+.+.++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.+++++...+++ +++++++|+.+++ +++
T Consensus 9 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~ 86 (239)
T 1xxl_A 9 SLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPY-VQECIGVDATKEMVEVASSFAQEKGVE-NVRFQQGTAESLPFPDD 86 (239)
T ss_dssp HHHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHHTCC-SEEEEECBTTBCCSCTT
T ss_pred CcchHHHHhCcCCCCEEEEEccCcCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCC-CeEEEecccccCCCCCC
Confidence 3456677788889999999999999999999886 569999999999999999999888874 7999999999988 668
Q ss_pred CCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCCCcccccccCchhhHhhhccC-CCCCCCHHHHHHHHH
Q 048309 136 KYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPDARYNEYRLSSDFIKEYIFP-GGCLPSLSRITSAMA 214 (288)
Q Consensus 136 ~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~p~~~~~~~~~~ 214 (288)
+||+|++..+++|+ .++..+++++.++|+|||.+++.+...+..... ............+ .....+..++.+.+.
T Consensus 87 ~fD~v~~~~~l~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 162 (239)
T 1xxl_A 87 SFDIITCRYAAHHF--SDVRKAVREVARVLKQDGRFLLVDHYAPEDPVL--DEFVNHLNRLRDPSHVRESSLSEWQAMFS 162 (239)
T ss_dssp CEEEEEEESCGGGC--SCHHHHHHHHHHHEEEEEEEEEEEECBCSSHHH--HHHHHHHHHHHCTTCCCCCBHHHHHHHHH
T ss_pred cEEEEEECCchhhc--cCHHHHHHHHHHHcCCCcEEEEEEcCCCCChhH--HHHHHHHHHhccccccCCCCHHHHHHHHH
Confidence 99999999999999 678999999999999999999987765443111 0001111111111 123456777777766
Q ss_pred HcCCh
Q 048309 215 AASSL 219 (288)
Q Consensus 215 ~~~~~ 219 (288)
++ ||
T Consensus 163 ~a-Gf 166 (239)
T 1xxl_A 163 AN-QL 166 (239)
T ss_dssp HT-TE
T ss_pred HC-CC
Confidence 65 44
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.8e-18 Score=144.29 Aligned_cols=133 Identities=17% Similarity=0.196 Sum_probs=112.0
Q ss_pred hHHHHHhhhhhcCCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHH
Q 048309 31 LAQAHRNISYHYDLDEDEDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEM 110 (288)
Q Consensus 31 ~~~~~~~~a~~Yd~~~~~~l~~a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~ 110 (288)
....|+..+..|+..... ...+..++..+ .++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.+++
T Consensus 13 ~~~~~~~~~~~y~~~~~~------~~~~~~~~~~~--~~~~~vLDiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~ 83 (211)
T 3e23_A 13 TLRFYRGNATAYAERQPR------SATLTKFLGEL--PAGAKILELGCGAGYQAEAMLAA-GFDVDATDGSPELAAEASR 83 (211)
T ss_dssp HHHHHHHSHHHHTTCCCC------CHHHHHHHTTS--CTTCEEEESSCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccch------hHHHHHHHHhc--CCCCcEEEECCCCCHHHHHHHHc-CCeEEEECCCHHHHHHHHH
Confidence 456788888888876332 34455555554 46789999999999999999986 7799999999999999998
Q ss_pred HHHHcCCCCceEEEEcccCCCCCCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCC
Q 048309 111 KVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTP 179 (288)
Q Consensus 111 ~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 179 (288)
++ +++++.+|+.+++.+++||+|++..+++|++.++...+++++.++|||||++++......
T Consensus 84 ~~-------~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 145 (211)
T 3e23_A 84 RL-------GRPVRTMLFHQLDAIDAYDAVWAHACLLHVPRDELADVLKLIWRALKPGGLFYASYKSGE 145 (211)
T ss_dssp HH-------TSCCEECCGGGCCCCSCEEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCS
T ss_pred hc-------CCceEEeeeccCCCCCcEEEEEecCchhhcCHHHHHHHHHHHHHhcCCCcEEEEEEcCCC
Confidence 86 367889999988877899999999999999877899999999999999999999865544
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.8e-19 Score=154.16 Aligned_cols=132 Identities=11% Similarity=0.118 Sum_probs=95.7
Q ss_pred HHHHHhhhhhcCCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHH
Q 048309 32 AQAHRNISYHYDLDEDEDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMK 111 (288)
Q Consensus 32 ~~~~~~~a~~Yd~~~~~~l~~a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~ 111 (288)
...|+..+..|+.... ..+++ .++.+.+... .+.+|||||||+|..+..+++. +.+|+|+|+|+.|++.|++.
T Consensus 8 ~d~F~~~a~~Y~~~Rp-~yp~~---l~~~l~~~~~--~~~~vLDvGcGtG~~~~~l~~~-~~~v~gvD~s~~ml~~a~~~ 80 (257)
T 4hg2_A 8 KDHFTPVADAYRAFRP-RYPRA---LFRWLGEVAP--ARGDALDCGCGSGQASLGLAEF-FERVHAVDPGEAQIRQALRH 80 (257)
T ss_dssp ------------CCCC-CCCHH---HHHHHHHHSS--CSSEEEEESCTTTTTHHHHHTT-CSEEEEEESCHHHHHTCCCC
T ss_pred HHHHHHHHHHHHHHCC-CcHHH---HHHHHHHhcC--CCCCEEEEcCCCCHHHHHHHHh-CCEEEEEeCcHHhhhhhhhc
Confidence 3457777888886522 22222 3344444433 4569999999999999999986 77999999999999877542
Q ss_pred HHHcCCCCceEEEEcccCCCC-CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCCC
Q 048309 112 VNEAGLQDHIRLYLCDYRQLP-KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPD 180 (288)
Q Consensus 112 ~~~~g~~~~v~~~~~d~~~~~-~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 180 (288)
.+++++++|+++++ ++++||+|++..++||++ ...+++++.++|||||+|++.....+.
T Consensus 81 -------~~v~~~~~~~e~~~~~~~sfD~v~~~~~~h~~~---~~~~~~e~~rvLkpgG~l~~~~~~~~~ 140 (257)
T 4hg2_A 81 -------PRVTYAVAPAEDTGLPPASVDVAIAAQAMHWFD---LDRFWAELRRVARPGAVFAAVTYGLTR 140 (257)
T ss_dssp -------TTEEEEECCTTCCCCCSSCEEEEEECSCCTTCC---HHHHHHHHHHHEEEEEEEEEEEECCCB
T ss_pred -------CCceeehhhhhhhcccCCcccEEEEeeehhHhh---HHHHHHHHHHHcCCCCEEEEEECCCCC
Confidence 47999999999998 789999999999998873 578999999999999999998766543
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=3.1e-18 Score=141.09 Aligned_cols=118 Identities=17% Similarity=0.263 Sum_probs=103.7
Q ss_pred HHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCE
Q 048309 60 LLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDR 139 (288)
Q Consensus 60 ~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~ 139 (288)
.+++.+...++.+|||+|||+|.++..+++. +.+++|+|+|+.+++.+++++...++ .+++++++|+.+++.+++||+
T Consensus 23 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~~d~~~~~~~~~~D~ 100 (199)
T 2xvm_A 23 EVLEAVKVVKPGKTLDLGCGNGRNSLYLAAN-GYDVDAWDKNAMSIANVERIKSIENL-DNLHTRVVDLNNLTFDRQYDF 100 (199)
T ss_dssp HHHHHTTTSCSCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHTC-TTEEEEECCGGGCCCCCCEEE
T ss_pred HHHHHhhccCCCeEEEEcCCCCHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHHhCCC-CCcEEEEcchhhCCCCCCceE
Confidence 4455566667889999999999999999987 78999999999999999999988887 379999999998776689999
Q ss_pred EEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCC
Q 048309 140 IISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTP 179 (288)
Q Consensus 140 I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 179 (288)
|++..+++|+++++...+++++.++|+|||.+++.+...+
T Consensus 101 v~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~ 140 (199)
T 2xvm_A 101 ILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDT 140 (199)
T ss_dssp EEEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCC
T ss_pred EEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEeecc
Confidence 9999999999777899999999999999999888665443
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.9e-19 Score=148.10 Aligned_cols=139 Identities=12% Similarity=0.167 Sum_probs=108.8
Q ss_pred hHHHHHhhhhhcCCCCC--CCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHH
Q 048309 31 LAQAHRNISYHYDLDED--EDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYA 108 (288)
Q Consensus 31 ~~~~~~~~a~~Yd~~~~--~~l~~a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a 108 (288)
+...|+.++..|+.... ..........+..++.. .+.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.+
T Consensus 5 ~~~~y~~~a~~y~~~~~~~~~~~~~~~~~l~~~~~~----~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a 79 (203)
T 3h2b_A 5 VSKAYSSPTFDAEALLGTVISAEDPDRVLIEPWATG----VDGVILDVGSGTGRWTGHLASL-GHQIEGLEPATRLVELA 79 (203)
T ss_dssp HHHHHHCTTTCHHHHTCSSCCTTCTTHHHHHHHHHH----CCSCEEEETCTTCHHHHHHHHT-TCCEEEECCCHHHHHHH
T ss_pred HHHHHhhHHHHHHHHhhhhccccHHHHHHHHHHhcc----CCCeEEEecCCCCHHHHHHHhc-CCeEEEEeCCHHHHHHH
Confidence 44566666666643211 11111223334444443 2779999999999999999987 77999999999999999
Q ss_pred HHHHHHcCCCCceEEEEcccCCCC-CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCCC
Q 048309 109 EMKVNEAGLQDHIRLYLCDYRQLP-KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPD 180 (288)
Q Consensus 109 ~~~~~~~g~~~~v~~~~~d~~~~~-~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 180 (288)
+++. .+++++++|+.+++ ++++||+|++..+++|++.++...+++++.++|+|||.+++.++..+.
T Consensus 80 ~~~~------~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~ 146 (203)
T 3h2b_A 80 RQTH------PSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPGELPDALVALRMAVEDGGGLLMSFFSGPS 146 (203)
T ss_dssp HHHC------TTSEEECCCGGGGGGSCCCEEEEEEESSSTTCCTTTHHHHHHHHHHTEEEEEEEEEEEECCSS
T ss_pred HHhC------CCCeEEeCcccccccCCCCeEEEEehhhHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEccCCc
Confidence 8872 37899999999988 678999999999999997778999999999999999999998876554
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.78 E-value=1.6e-18 Score=147.42 Aligned_cols=139 Identities=20% Similarity=0.232 Sum_probs=111.8
Q ss_pred HHhhhhhcCCCCC-CCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHH
Q 048309 35 HRNISYHYDLDED-EDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVN 113 (288)
Q Consensus 35 ~~~~a~~Yd~~~~-~~l~~a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~ 113 (288)
|+.++..||.... ........+.+..++... ..++.+|||+|||+|.++..+++. +.+++|+|+|+.+++.++++..
T Consensus 3 y~~~a~~yd~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~vLdiG~G~G~~~~~l~~~-~~~~~~~D~s~~~~~~a~~~~~ 80 (246)
T 1y8c_A 3 YNKFAHIYDKLIRADVDYKKWSDFIIEKCVEN-NLVFDDYLDLACGTGNLTENLCPK-FKNTWAVDLSQEMLSEAENKFR 80 (246)
T ss_dssp HHHHHHHHHHHTTCSCCHHHHHHHHHHHHHTT-TCCTTEEEEETCTTSTTHHHHGGG-SSEEEEECSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccccccHHHHHHHHHHHHHHh-CCCCCeEEEeCCCCCHHHHHHHHC-CCcEEEEECCHHHHHHHHHHHh
Confidence 6677777775432 223344444555555443 236789999999999999999886 7799999999999999999998
Q ss_pred HcCCCCceEEEEcccCCCCCCCCCCEEEEcc-chhhh-CHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 114 EAGLQDHIRLYLCDYRQLPKAKKYDRIISCE-MMEAV-GHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 114 ~~g~~~~v~~~~~d~~~~~~~~~fD~I~~~~-~l~~~-~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
..+. +++++++|+.+++..++||+|++.. +++|+ ++++...+++++.++|+|||.+++....
T Consensus 81 ~~~~--~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 144 (246)
T 1y8c_A 81 SQGL--KPRLACQDISNLNINRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINS 144 (246)
T ss_dssp HTTC--CCEEECCCGGGCCCSCCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred hcCC--CeEEEecccccCCccCCceEEEEcCccccccCCHHHHHHHHHHHHHhcCCCcEEEEEecC
Confidence 8765 6999999999987448999999998 99999 4467899999999999999999986543
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.78 E-value=1.5e-18 Score=148.53 Aligned_cols=141 Identities=18% Similarity=0.279 Sum_probs=112.4
Q ss_pred HHHhhhhhcCCCCCCC--HHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHH
Q 048309 34 AHRNISYHYDLDEDED--LKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMK 111 (288)
Q Consensus 34 ~~~~~a~~Yd~~~~~~--l~~a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~ 111 (288)
.|+.++.+||...... ........+..++......++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++
T Consensus 4 ~y~~~a~~yd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~-~~~v~gvD~s~~~l~~a~~~ 82 (252)
T 1wzn_A 4 LYTLLAEYYDTIYRRRIERVKAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAER-GYEVVGLDLHEEMLRVARRK 82 (252)
T ss_dssp GGTTTGGGHHHHTHHHHHTHHHHHHHHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHhcccCCCEEEEeCCCCCHHHHHHHHC-CCeEEEEECCHHHHHHHHHH
Confidence 4667777777531100 01233445566777776677889999999999999999986 78999999999999999999
Q ss_pred HHHcCCCCceEEEEcccCCCCCCCCCCEEEEcc-chhhhCHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 112 VNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCE-MMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 112 ~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~~~~-~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
+...+. +++++++|+.+++..++||+|++.. .+++++.++...+++++.++|+|||.+++....
T Consensus 83 ~~~~~~--~v~~~~~d~~~~~~~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~ 147 (252)
T 1wzn_A 83 AKERNL--KIEFLQGDVLEIAFKNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFPC 147 (252)
T ss_dssp HHHTTC--CCEEEESCGGGCCCCSCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred HHhcCC--ceEEEECChhhcccCCCccEEEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEeccc
Confidence 988775 6999999999987557899999874 556666678899999999999999999986543
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.78 E-value=2.3e-18 Score=147.40 Aligned_cols=126 Identities=11% Similarity=0.169 Sum_probs=109.0
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccC
Q 048309 50 LKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYR 129 (288)
Q Consensus 50 l~~a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~ 129 (288)
+..........+++.+...++.+|||||||+|.++..+++....+|+|+|+|+.+++.+++++... .+++++++|+.
T Consensus 74 ~~~~~~~~~~~~l~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~ 150 (254)
T 1xtp_A 74 VHDVDIEGSRNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM---PVGKFILASME 150 (254)
T ss_dssp GHHHHHHHHHHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTS---SEEEEEESCGG
T ss_pred cCHHHHHHHHHHHHhhcccCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhccC---CceEEEEccHH
Confidence 344555666778888877788999999999999999998864558999999999999999987654 47999999999
Q ss_pred CCC-CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecC
Q 048309 130 QLP-KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSST 178 (288)
Q Consensus 130 ~~~-~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 178 (288)
+++ ++++||+|++..+++|++.++...+++++.++|+|||.+++.+...
T Consensus 151 ~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 200 (254)
T 1xtp_A 151 TATLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCS 200 (254)
T ss_dssp GCCCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC
T ss_pred HCCCCCCCeEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEecCC
Confidence 887 6689999999999999987789999999999999999999987643
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.6e-18 Score=150.54 Aligned_cols=114 Identities=21% Similarity=0.410 Sum_probs=102.1
Q ss_pred HHHHcCCCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CCCCCC
Q 048309 61 LIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAKKYD 138 (288)
Q Consensus 61 l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~~fD 138 (288)
+.....+.++.+|||||||+|.++..+++. ++.+|+|+|+|+.+++.+++++...+++ +++++++|+.+++ ++++||
T Consensus 29 l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~~~fD 107 (276)
T 3mgg_A 29 LHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIK-NVKFLQANIFSLPFEDSSFD 107 (276)
T ss_dssp HHTTCCCCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCGGGCCSCTTCEE
T ss_pred HhhcccCCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEcccccCCCCCCCee
Confidence 334445678899999999999999999987 5789999999999999999999988884 7999999999988 678999
Q ss_pred EEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 139 RIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 139 ~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
+|++..+++|+ .+...+++++.++|||||++++.+..
T Consensus 108 ~v~~~~~l~~~--~~~~~~l~~~~~~L~pgG~l~~~~~~ 144 (276)
T 3mgg_A 108 HIFVCFVLEHL--QSPEEALKSLKKVLKPGGTITVIEGD 144 (276)
T ss_dssp EEEEESCGGGC--SCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred EEEEechhhhc--CCHHHHHHHHHHHcCCCcEEEEEEcC
Confidence 99999999999 67789999999999999999997754
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.1e-18 Score=148.12 Aligned_cols=121 Identities=16% Similarity=0.174 Sum_probs=103.9
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCC
Q 048309 57 KHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKK 136 (288)
Q Consensus 57 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~ 136 (288)
.+..++.....++ .+|||||||+|.++..+++ .+.+|+|+|+|+.+++.|++++...+...+++++++|+.++++.++
T Consensus 55 ~l~~~~~~~~~~~-~~vLDiGcG~G~~~~~l~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 132 (235)
T 3lcc_A 55 LIVHLVDTSSLPL-GRALVPGCGGGHDVVAMAS-PERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPTEL 132 (235)
T ss_dssp HHHHHHHTTCSCC-EEEEEETCTTCHHHHHHCB-TTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCSSC
T ss_pred HHHHHHHhcCCCC-CCEEEeCCCCCHHHHHHHh-CCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCCCCC
Confidence 3445565555544 4999999999999999987 4789999999999999999998775555679999999999886679
Q ss_pred CCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCC
Q 048309 137 YDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTP 179 (288)
Q Consensus 137 fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 179 (288)
||+|++..+++|+++++...+++++.++|+|||.+++.++...
T Consensus 133 fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 175 (235)
T 3lcc_A 133 FDLIFDYVFFCAIEPEMRPAWAKSMYELLKPDGELITLMYPIT 175 (235)
T ss_dssp EEEEEEESSTTTSCGGGHHHHHHHHHHHEEEEEEEEEEECCCS
T ss_pred eeEEEEChhhhcCCHHHHHHHHHHHHHHCCCCcEEEEEEeccc
Confidence 9999999999999777999999999999999999999776543
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.77 E-value=2e-18 Score=147.96 Aligned_cols=116 Identities=16% Similarity=0.230 Sum_probs=100.8
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CC
Q 048309 56 RKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KA 134 (288)
Q Consensus 56 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~ 134 (288)
..+..+++.+...++.+|||+|||+|.++..+++....+|+|+|+|+.+++.++++.. ..+++++++|+.+++ ++
T Consensus 31 ~~~~~l~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~~~~~ 106 (253)
T 3g5l_A 31 GEWHELKKMLPDFNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTT----SPVVCYEQKAIEDIAIEP 106 (253)
T ss_dssp HHHHHHHTTCCCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCC----CTTEEEEECCGGGCCCCT
T ss_pred hhHHHHHHhhhccCCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhc----cCCeEEEEcchhhCCCCC
Confidence 3445566777767889999999999999999998733399999999999999998865 257999999999988 67
Q ss_pred CCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 135 KKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 135 ~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
++||+|++..+++|+ +++..+++++.++|||||.+++....
T Consensus 107 ~~fD~v~~~~~l~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~ 147 (253)
T 3g5l_A 107 DAYNVVLSSLALHYI--ASFDDICKKVYINLKSSGSFIFSVEH 147 (253)
T ss_dssp TCEEEEEEESCGGGC--SCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CCeEEEEEchhhhhh--hhHHHHHHHHHHHcCCCcEEEEEeCC
Confidence 899999999999999 78899999999999999999997543
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.77 E-value=5.2e-18 Score=149.24 Aligned_cols=113 Identities=19% Similarity=0.267 Sum_probs=97.7
Q ss_pred HHHcCCCCCCEEEEECCcccHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHc-CCCCceEEEEcccCCCC-CC---
Q 048309 62 IEKARVSKEHEVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQMKYAEMKVNEA-GLQDHIRLYLCDYRQLP-KA--- 134 (288)
Q Consensus 62 ~~~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~giD~s~~~~~~a~~~~~~~-g~~~~v~~~~~d~~~~~-~~--- 134 (288)
+..+...++.+|||||||+|..+..+++. ++.+|+|+|+|+.+++.|+++++.. +...+++++++|+.+++ ..
T Consensus 29 l~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 108 (299)
T 3g5t_A 29 IDEYHDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADS 108 (299)
T ss_dssp HHHHCCSCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTT
T ss_pred HHHHhcCCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCcccccc
Confidence 33333457889999999999999999963 5789999999999999999999886 44468999999999987 54
Q ss_pred ---CCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 135 ---KKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 135 ---~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
++||+|++..+++|+ ++..+++++.++|+|||.+++.++.
T Consensus 109 ~~~~~fD~V~~~~~l~~~---~~~~~l~~~~~~LkpgG~l~i~~~~ 151 (299)
T 3g5t_A 109 VDKQKIDMITAVECAHWF---DFEKFQRSAYANLRKDGTIAIWGYA 151 (299)
T ss_dssp TTSSCEEEEEEESCGGGS---CHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred ccCCCeeEEeHhhHHHHh---CHHHHHHHHHHhcCCCcEEEEEecC
Confidence 799999999999999 7789999999999999999995544
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.8e-18 Score=148.75 Aligned_cols=110 Identities=24% Similarity=0.241 Sum_probs=93.9
Q ss_pred CCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHH----------cC------CCCceEEEEcccCC
Q 048309 67 VSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNE----------AG------LQDHIRLYLCDYRQ 130 (288)
Q Consensus 67 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~----------~g------~~~~v~~~~~d~~~ 130 (288)
..++.+|||+|||+|..+..|++. |.+|+|||+|+.+++.|+++... .+ ...+++++++|+.+
T Consensus 66 ~~~~~~vLD~GCG~G~~~~~La~~-G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~ 144 (252)
T 2gb4_A 66 GQSGLRVFFPLCGKAIEMKWFADR-GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFD 144 (252)
T ss_dssp TCCSCEEEETTCTTCTHHHHHHHT-TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTT
T ss_pred CCCCCeEEEeCCCCcHHHHHHHHC-CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcccc
Confidence 457789999999999999999996 88999999999999999876531 00 11479999999999
Q ss_pred CC-C-CCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 131 LP-K-AKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 131 ~~-~-~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
++ . .++||+|++..+++|+++++...+++++.++|||||++++.++.
T Consensus 145 l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~~~ 193 (252)
T 2gb4_A 145 LPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAVLS 193 (252)
T ss_dssp GGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEE
T ss_pred CCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEEEe
Confidence 88 3 38999999999999998788899999999999999999865544
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.9e-18 Score=146.96 Aligned_cols=141 Identities=16% Similarity=0.265 Sum_probs=99.5
Q ss_pred hHHHHHhhhhhcCCCCCCCHHHHHH-HHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHH
Q 048309 31 LAQAHRNISYHYDLDEDEDLKVAQM-RKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAE 109 (288)
Q Consensus 31 ~~~~~~~~a~~Yd~~~~~~l~~a~~-~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~ 109 (288)
....|+..+..|+............ ..+..+.+.+ .++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.++
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~vLDiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~ 92 (242)
T 3l8d_A 16 AEKKWDSSAEFWNQNSQEMWDSGSRSTIIPFFEQYV--KKEAEVLDVGCGDGYGTYKLSRT-GYKAVGVDISEVMIQKGK 92 (242)
T ss_dssp ----------------CHHHHTSTTTTHHHHHHHHS--CTTCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHH
T ss_pred HHHHHHhHHHHhhhhhhhccCcccHHHHHHHHHHHc--CCCCeEEEEcCCCCHHHHHHHHc-CCeEEEEECCHHHHHHHH
Confidence 4556666666666531111111111 2233344443 37789999999999999999997 789999999999999998
Q ss_pred HHHHHcCCCCceEEEEcccCCCC-CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCCC
Q 048309 110 MKVNEAGLQDHIRLYLCDYRQLP-KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPD 180 (288)
Q Consensus 110 ~~~~~~g~~~~v~~~~~d~~~~~-~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 180 (288)
++.. ..+++++++|+.+++ ++++||+|++..+++|+ .++..+++++.++|+|||.+++.+.....
T Consensus 93 ~~~~----~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~--~~~~~~l~~~~~~L~pgG~l~i~~~~~~~ 158 (242)
T 3l8d_A 93 ERGE----GPDLSFIKGDLSSLPFENEQFEAIMAINSLEWT--EEPLRALNEIKRVLKSDGYACIAILGPTA 158 (242)
T ss_dssp TTTC----BTTEEEEECBTTBCSSCTTCEEEEEEESCTTSS--SCHHHHHHHHHHHEEEEEEEEEEEECTTC
T ss_pred hhcc----cCCceEEEcchhcCCCCCCCccEEEEcChHhhc--cCHHHHHHHHHHHhCCCeEEEEEEcCCcc
Confidence 7742 257999999999988 67899999999999999 78889999999999999999998866543
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=4.8e-18 Score=142.14 Aligned_cols=115 Identities=23% Similarity=0.247 Sum_probs=99.0
Q ss_pred HHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCC
Q 048309 59 SLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYD 138 (288)
Q Consensus 59 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD 138 (288)
..+...+...++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.+++++... ++++++++|+.+++++++||
T Consensus 41 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~~~~fD 116 (216)
T 3ofk_A 41 QLLRLSLSSGAVSNGLEIGCAAGAFTEKLAPH-CKRLTVIDVMPRAIGRACQRTKRW---SHISWAATDILQFSTAELFD 116 (216)
T ss_dssp HHHHHHTTTSSEEEEEEECCTTSHHHHHHGGG-EEEEEEEESCHHHHHHHHHHTTTC---SSEEEEECCTTTCCCSCCEE
T ss_pred HHHHHHcccCCCCcEEEEcCCCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHhcccC---CCeEEEEcchhhCCCCCCcc
Confidence 33444566677889999999999999999886 569999999999999999987654 37999999999988778999
Q ss_pred EEEEccchhhhC-HhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 139 RIISCEMMEAVG-HEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 139 ~I~~~~~l~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
+|++..+++|++ ++....+++++.++|+|||.+++.+..
T Consensus 117 ~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 156 (216)
T 3ofk_A 117 LIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSAR 156 (216)
T ss_dssp EEEEESCGGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred EEEEccHHHhCCCHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence 999999999995 355678899999999999999996653
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.1e-18 Score=150.67 Aligned_cols=129 Identities=19% Similarity=0.254 Sum_probs=102.6
Q ss_pred HHHhhhhhcCCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHH
Q 048309 34 AHRNISYHYDLDEDEDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVN 113 (288)
Q Consensus 34 ~~~~~a~~Yd~~~~~~l~~a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~ 113 (288)
.|+.++..|+...... ......+++.+...++.+|||||||+|.++..+++ ++.+|+|+|+|+.+++.++++.
T Consensus 4 ~y~~~a~~y~~~~~~~-----~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~-~~~~v~gvD~s~~~~~~a~~~~- 76 (261)
T 3ege_A 4 IYNSIGKQYSQTRVPD-----IRIVNAIINLLNLPKGSVIADIGAGTGGYSVALAN-QGLFVYAVEPSIVMRQQAVVHP- 76 (261)
T ss_dssp ---------CCSBCCC-----HHHHHHHHHHHCCCTTCEEEEETCTTSHHHHHHHT-TTCEEEEECSCHHHHHSSCCCT-
T ss_pred HHHHHHHHHhhccccc-----HHHHHHHHHHhCCCCCCEEEEEcCcccHHHHHHHh-CCCEEEEEeCCHHHHHHHHhcc-
Confidence 5788899999763322 24566777888778899999999999999999998 5889999999999988776542
Q ss_pred HcCCCCceEEEEcccCCCC-CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecC
Q 048309 114 EAGLQDHIRLYLCDYRQLP-KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSST 178 (288)
Q Consensus 114 ~~g~~~~v~~~~~d~~~~~-~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 178 (288)
+++++++|+.+++ ++++||+|++..+++|+ .++..+++++.++|| ||.+++.++..
T Consensus 77 ------~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~--~~~~~~l~~~~~~Lk-gG~~~~~~~~~ 133 (261)
T 3ege_A 77 ------QVEWFTGYAENLALPDKSVDGVISILAIHHF--SHLEKSFQEMQRIIR-DGTIVLLTFDI 133 (261)
T ss_dssp ------TEEEECCCTTSCCSCTTCBSEEEEESCGGGC--SSHHHHHHHHHHHBC-SSCEEEEEECG
T ss_pred ------CCEEEECchhhCCCCCCCEeEEEEcchHhhc--cCHHHHHHHHHHHhC-CcEEEEEEcCC
Confidence 7999999999988 67899999999999999 788999999999999 99888877653
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=7.2e-18 Score=147.60 Aligned_cols=111 Identities=17% Similarity=0.204 Sum_probs=98.2
Q ss_pred CCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC--CCCCCCEEEEcc
Q 048309 67 VSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP--KAKKYDRIISCE 144 (288)
Q Consensus 67 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~--~~~~fD~I~~~~ 144 (288)
+.++.+|||||||+|.++..+++.+..+|+|+|+|+.+++.|++++...++..+++++++|+.+.+ .+++||+|++..
T Consensus 62 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~ 141 (298)
T 1ri5_A 62 TKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQF 141 (298)
T ss_dssp CCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEES
T ss_pred CCCCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEECc
Confidence 467889999999999999998876445999999999999999999998877668999999999876 467999999999
Q ss_pred chhh--hCHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 145 MMEA--VGHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 145 ~l~~--~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
+++| .+.++...+++++.++|+|||.+++.+..
T Consensus 142 ~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 176 (298)
T 1ri5_A 142 SFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPS 176 (298)
T ss_dssp CGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred hhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 9988 34578899999999999999999997755
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.3e-18 Score=143.52 Aligned_cols=132 Identities=15% Similarity=0.173 Sum_probs=104.8
Q ss_pred HHhhhhhcCCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHH
Q 048309 35 HRNISYHYDLDEDEDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGC-NYTGITLSAEQMKYAEMKVN 113 (288)
Q Consensus 35 ~~~~a~~Yd~~~~~~l~~a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~-~v~giD~s~~~~~~a~~~~~ 113 (288)
|+.++..||............+....++..+.. ++.+|||+|||+|.++..+ +. +++|+|+|+.+++.++++.
T Consensus 3 fd~~a~~y~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~vLdiG~G~G~~~~~l----~~~~v~~vD~s~~~~~~a~~~~- 76 (211)
T 2gs9_A 3 FASLAEAYEAWYGTPLGAYVIAEEERALKGLLP-PGESLLEVGAGTGYWLRRL----PYPQKVGVEPSEAMLAVGRRRA- 76 (211)
T ss_dssp TTTTTTTTTGGGGSHHHHHHHHHHHHHHHTTCC-CCSEEEEETCTTCHHHHHC----CCSEEEEECCCHHHHHHHHHHC-
T ss_pred hhhHHHHHHHHhcccchhhhHHHHHHHHHHhcC-CCCeEEEECCCCCHhHHhC----CCCeEEEEeCCHHHHHHHHHhC-
Confidence 566777777642222222212334455655544 7889999999999998877 45 9999999999999998875
Q ss_pred HcCCCCceEEEEcccCCCC-CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCC
Q 048309 114 EAGLQDHIRLYLCDYRQLP-KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTP 179 (288)
Q Consensus 114 ~~g~~~~v~~~~~d~~~~~-~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 179 (288)
.+++++++|+.+++ ++++||+|++..+++|+ .++..+++++.++|||||.+++.+....
T Consensus 77 -----~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~--~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 136 (211)
T 2gs9_A 77 -----PEATWVRAWGEALPFPGESFDVVLLFTTLEFV--EDVERVLLEARRVLRPGGALVVGVLEAL 136 (211)
T ss_dssp -----TTSEEECCCTTSCCSCSSCEEEEEEESCTTTC--SCHHHHHHHHHHHEEEEEEEEEEEECTT
T ss_pred -----CCcEEEEcccccCCCCCCcEEEEEEcChhhhc--CCHHHHHHHHHHHcCCCCEEEEEecCCc
Confidence 36899999999988 67899999999999999 6789999999999999999999887644
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.76 E-value=6.5e-18 Score=143.83 Aligned_cols=134 Identities=19% Similarity=0.305 Sum_probs=106.9
Q ss_pred CCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCC--C-CCCCCCEEEEc
Q 048309 67 VSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQL--P-KAKKYDRIISC 143 (288)
Q Consensus 67 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~--~-~~~~fD~I~~~ 143 (288)
++++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.++++ ++++.+|+.+. + ++++||+|++.
T Consensus 39 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~---------~~~~~~d~~~~~~~~~~~~fD~i~~~ 108 (240)
T 3dli_A 39 FKGCRRVLDIGCGRGEFLELCKEE-GIESIGVDINEDMIKFCEGK---------FNVVKSDAIEYLKSLPDKYLDGVMIS 108 (240)
T ss_dssp TTTCSCEEEETCTTTHHHHHHHHH-TCCEEEECSCHHHHHHHHTT---------SEEECSCHHHHHHTSCTTCBSEEEEE
T ss_pred hcCCCeEEEEeCCCCHHHHHHHhC-CCcEEEEECCHHHHHHHHhh---------cceeeccHHHHhhhcCCCCeeEEEEC
Confidence 356789999999999999999886 77999999999999988764 68899998875 4 56899999999
Q ss_pred cchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCCCcccccccCchhhHhhhccCCC-CCCCHHHHHHHHHHcCCh
Q 048309 144 EMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPDARYNEYRLSSDFIKEYIFPGG-CLPSLSRITSAMAAASSL 219 (288)
Q Consensus 144 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~p~~~~~~~~~~~~~~~ 219 (288)
.+++|++.++...+++++.++|||||.+++.+...... ..+...+..+.. ...+..++.+.+.++ ||
T Consensus 109 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~~~l~~a-Gf 176 (240)
T 3dli_A 109 HFVEHLDPERLFELLSLCYSKMKYSSYIVIESPNPTSL--------YSLINFYIDPTHKKPVHPETLKFILEYL-GF 176 (240)
T ss_dssp SCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEECTTSH--------HHHHHHTTSTTCCSCCCHHHHHHHHHHH-TC
T ss_pred CchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCCcchh--------HHHHHHhcCccccccCCHHHHHHHHHHC-CC
Confidence 99999976788999999999999999999987764321 122333444433 456777777777665 44
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.76 E-value=2.1e-18 Score=146.75 Aligned_cols=133 Identities=16% Similarity=0.221 Sum_probs=97.7
Q ss_pred HHHHhhhhhcCCCCCCCHHHHHHHHHHHHHHHcC-CCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHH
Q 048309 33 QAHRNISYHYDLDEDEDLKVAQMRKHSLLIEKAR-VSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMK 111 (288)
Q Consensus 33 ~~~~~~a~~Yd~~~~~~l~~a~~~~~~~l~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~ 111 (288)
..|+..+..|+.. .... .....+++.+. ..++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.|+++
T Consensus 11 ~~~~~~~~~~~~~---~~~~---~~~~~~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~ 83 (250)
T 2p7i_A 11 EIKDTAGHKYAYN---FDFD---VMHPFMVRAFTPFFRPGNLLELGSFKGDFTSRLQEH-FNDITCVEASEEAISHAQGR 83 (250)
T ss_dssp ------------C---HHHH---THHHHHHHHHGGGCCSSCEEEESCTTSHHHHHHTTT-CSCEEEEESCHHHHHHHHHH
T ss_pred HHHhhHHHHhcCc---cchh---hHHHHHHHHHHhhcCCCcEEEECCCCCHHHHHHHHh-CCcEEEEeCCHHHHHHHHHh
Confidence 4455556666532 1112 22233333332 246779999999999999999886 56899999999999999987
Q ss_pred HHHcCCCCceEEEEcccCCCCCCCCCCEEEEccchhhhCHhhHHHHHHHHh-cccccCcEEEEEeecCC
Q 048309 112 VNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMMEAVGHEYMEEYFGCCE-SLLAKDGLLVLQFSSTP 179 (288)
Q Consensus 112 ~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~-~~LkpgG~l~~~~~~~~ 179 (288)
... +++++++|+.++.++++||+|++..+++|+ .++..+++++. ++|||||.+++.+....
T Consensus 84 ~~~-----~v~~~~~d~~~~~~~~~fD~v~~~~~l~~~--~~~~~~l~~~~~~~LkpgG~l~i~~~~~~ 145 (250)
T 2p7i_A 84 LKD-----GITYIHSRFEDAQLPRRYDNIVLTHVLEHI--DDPVALLKRINDDWLAEGGRLFLVCPNAN 145 (250)
T ss_dssp SCS-----CEEEEESCGGGCCCSSCEEEEEEESCGGGC--SSHHHHHHHHHHTTEEEEEEEEEEEECTT
T ss_pred hhC-----CeEEEEccHHHcCcCCcccEEEEhhHHHhh--cCHHHHHHHHHHHhcCCCCEEEEEcCChH
Confidence 532 699999999988767899999999999999 67899999999 99999999999876544
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.76 E-value=3.1e-18 Score=147.32 Aligned_cols=135 Identities=17% Similarity=0.250 Sum_probs=105.9
Q ss_pred HHHhhhhhcCCCCCCCHHHHHHHHHHHHHH-HcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHH
Q 048309 34 AHRNISYHYDLDEDEDLKVAQMRKHSLLIE-KARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKV 112 (288)
Q Consensus 34 ~~~~~a~~Yd~~~~~~l~~a~~~~~~~l~~-~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~ 112 (288)
.|+.++..|+...... ..........+.+ ...+.++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.+++++
T Consensus 4 ~~~~~a~~y~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~ 81 (263)
T 2yqz_A 4 ALLRAAYAYDRLRAHP-PEVAGQIATAMASAVHPKGEEPVFLELGVGTGRIALPLIAR-GYRYIALDADAAMLEVFRQKI 81 (263)
T ss_dssp HHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHCCCSSSCCEEEEETCTTSTTHHHHHTT-TCEEEEEESCHHHHHHHHHHT
T ss_pred chHHHHHHHhhhcccC-hHHHHHHHHHHHHhhcCCCCCCEEEEeCCcCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHh
Confidence 4566666666532111 1122223333333 225567889999999999999999986 789999999999999999987
Q ss_pred HHcCCCCceEEEEcccCCCC-CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 113 NEAGLQDHIRLYLCDYRQLP-KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 113 ~~~g~~~~v~~~~~d~~~~~-~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
..+ ..+++++++|+.+++ ++++||+|++..+++|+ .+...+++++.++|+|||.+++.
T Consensus 82 -~~~-~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~--~~~~~~l~~~~~~L~pgG~l~~~ 140 (263)
T 2yqz_A 82 -AGV-DRKVQVVQADARAIPLPDESVHGVIVVHLWHLV--PDWPKVLAEAIRVLKPGGALLEG 140 (263)
T ss_dssp -TTS-CTTEEEEESCTTSCCSCTTCEEEEEEESCGGGC--TTHHHHHHHHHHHEEEEEEEEEE
T ss_pred -hcc-CCceEEEEcccccCCCCCCCeeEEEECCchhhc--CCHHHHHHHHHHHCCCCcEEEEE
Confidence 222 358999999999988 67899999999999999 67899999999999999999987
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.76 E-value=6e-18 Score=144.15 Aligned_cols=111 Identities=14% Similarity=0.288 Sum_probs=96.8
Q ss_pred CCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CCCCCCEEEEccchh
Q 048309 69 KEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAKKYDRIISCEMME 147 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~~fD~I~~~~~l~ 147 (288)
++.+|||||||+|.++..+++....+|+|+|+|+.+++.+++++...+. .+++++++|+.+++ .+++||+|++..+++
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 157 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGK-RVRNYFCCGLQDFTPEPDSYDVIWIQWVIG 157 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGG-GEEEEEECCGGGCCCCSSCEEEEEEESCGG
T ss_pred CCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcCC-ceEEEEEcChhhcCCCCCCEEEEEEcchhh
Confidence 5789999999999999998876556999999999999999999876542 46899999999887 556899999999999
Q ss_pred hhCHhhHHHHHHHHhcccccCcEEEEEeecCCC
Q 048309 148 AVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPD 180 (288)
Q Consensus 148 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 180 (288)
|++.+....+++++.++|+|||++++.+...+.
T Consensus 158 ~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 190 (241)
T 2ex4_A 158 HLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQE 190 (241)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSS
T ss_pred hCCHHHHHHHHHHHHHhcCCCeEEEEEEccCCC
Confidence 997666779999999999999999998766443
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.76 E-value=7.7e-18 Score=147.08 Aligned_cols=108 Identities=17% Similarity=0.244 Sum_probs=98.8
Q ss_pred CCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCEEEEccchh
Q 048309 68 SKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMME 147 (288)
Q Consensus 68 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~~~~~l~ 147 (288)
.++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.+++++...++ +++++++|+.+.+..++||+|++..+++
T Consensus 119 ~~~~~vLD~GcG~G~~~~~l~~~-g~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~fD~i~~~~~~~ 195 (286)
T 3m70_A 119 ISPCKVLDLGCGQGRNSLYLSLL-GYDVTSWDHNENSIAFLNETKEKENL--NISTALYDINAANIQENYDFIVSTVVFM 195 (286)
T ss_dssp SCSCEEEEESCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCGGGCCCCSCEEEEEECSSGG
T ss_pred cCCCcEEEECCCCCHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHHHcCC--ceEEEEeccccccccCCccEEEEccchh
Confidence 47889999999999999999987 77999999999999999999998886 7999999999987678999999999999
Q ss_pred hhCHhhHHHHHHHHhcccccCcEEEEEeecC
Q 048309 148 AVGHEYMEEYFGCCESLLAKDGLLVLQFSST 178 (288)
Q Consensus 148 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 178 (288)
|++++....+++++.++|+|||.+++.+...
T Consensus 196 ~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 226 (286)
T 3m70_A 196 FLNRERVPSIIKNMKEHTNVGGYNLIVAAMS 226 (286)
T ss_dssp GSCGGGHHHHHHHHHHTEEEEEEEEEEEEBC
T ss_pred hCCHHHHHHHHHHHHHhcCCCcEEEEEEecC
Confidence 9988888999999999999999988765543
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.75 E-value=5.3e-18 Score=149.71 Aligned_cols=115 Identities=21% Similarity=0.255 Sum_probs=100.1
Q ss_pred CCCCCCEEEEECCcccHHHHHHH--HccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCEEEEc
Q 048309 66 RVSKEHEVLEIGCGWGTFAIEVV--RQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISC 143 (288)
Q Consensus 66 ~~~~~~~vLDiGcG~G~~~~~la--~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~~~ 143 (288)
.+.++.+|||||||+|..+..++ ..++.+|+|+|+|+.+++.|++++...++..+++++++|+.+++.+++||+|++.
T Consensus 115 ~l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~ 194 (305)
T 3ocj_A 115 HLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTREGYDLLTSN 194 (305)
T ss_dssp HCCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCCSCEEEEECC
T ss_pred hCCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCccCCeEEEEEC
Confidence 45688999999999999999985 3367899999999999999999999888877799999999998844999999999
Q ss_pred cchhhhC-HhhHHHHHHHHhcccccCcEEEEEeecCCC
Q 048309 144 EMMEAVG-HEYMEEYFGCCESLLAKDGLLVLQFSSTPD 180 (288)
Q Consensus 144 ~~l~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 180 (288)
.+++|++ +.....+++++.++|||||.+++.++..+.
T Consensus 195 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 232 (305)
T 3ocj_A 195 GLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPP 232 (305)
T ss_dssp SSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCT
T ss_pred ChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCC
Confidence 9999993 444456899999999999999998876543
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.75 E-value=6.7e-18 Score=144.96 Aligned_cols=127 Identities=17% Similarity=0.193 Sum_probs=107.8
Q ss_pred hhhcCCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCC
Q 048309 39 SYHYDLDEDEDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGL 117 (288)
Q Consensus 39 a~~Yd~~~~~~l~~a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~ 117 (288)
+..|+.... .+.+....+++.+...++.+|||||||+|.++..+++. ++.+|+|+|+|+.+++.++++.
T Consensus 8 ~~~y~~~~~-----~~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~----- 77 (259)
T 2p35_A 8 AQQYLKFED-----ERTRPARDLLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRL----- 77 (259)
T ss_dssp CGGGBCCCC-----GGGHHHHHHHTTCCCSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHS-----
T ss_pred HHHHHHHHH-----HHHHHHHHHHHhcCCCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC-----
Confidence 456665422 23445567888888888899999999999999999987 5789999999999999998871
Q ss_pred CCceEEEEcccCCCCCCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecC
Q 048309 118 QDHIRLYLCDYRQLPKAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSST 178 (288)
Q Consensus 118 ~~~v~~~~~d~~~~~~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 178 (288)
.+++++++|+.+++++++||+|++..+++|+ .++..+++++.++|+|||.+++.+...
T Consensus 78 -~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~--~~~~~~l~~~~~~L~pgG~l~~~~~~~ 135 (259)
T 2p35_A 78 -PNTNFGKADLATWKPAQKADLLYANAVFQWV--PDHLAVLSQLMDQLESGGVLAVQMPDN 135 (259)
T ss_dssp -TTSEEEECCTTTCCCSSCEEEEEEESCGGGS--TTHHHHHHHHGGGEEEEEEEEEEEECC
T ss_pred -CCcEEEECChhhcCccCCcCEEEEeCchhhC--CCHHHHHHHHHHhcCCCeEEEEEeCCC
Confidence 4789999999988766899999999999999 788999999999999999999987653
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.4e-17 Score=145.09 Aligned_cols=117 Identities=9% Similarity=0.117 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHH-HHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCC
Q 048309 52 VAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAI-EVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQ 130 (288)
Q Consensus 52 ~a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~-~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~ 130 (288)
+.....+..-...+.++++.+|||||||+|.++. .+++.++++|+|+|+|+++++.|+++++..|+ .+++++++|+.+
T Consensus 105 ~~~~~l~~~E~~la~l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl-~~v~~v~gDa~~ 183 (298)
T 3fpf_A 105 PRYLELLKNEAALGRFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGV-DGVNVITGDETV 183 (298)
T ss_dssp HHHHHHHHHHHHHTTCCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTC-CSEEEEESCGGG
T ss_pred ccHHHHHHHHHHHcCCCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCC-CCeEEEECchhh
Confidence 3444455555567788999999999999987664 44554789999999999999999999999998 799999999998
Q ss_pred CCCCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 131 LPKAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 131 ~~~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
++ +++||+|++... . ++..++++++.++|||||++++..
T Consensus 184 l~-d~~FDvV~~~a~---~--~d~~~~l~el~r~LkPGG~Lvv~~ 222 (298)
T 3fpf_A 184 ID-GLEFDVLMVAAL---A--EPKRRVFRNIHRYVDTETRIIYRT 222 (298)
T ss_dssp GG-GCCCSEEEECTT---C--SCHHHHHHHHHHHCCTTCEEEEEE
T ss_pred CC-CCCcCEEEECCC---c--cCHHHHHHHHHHHcCCCcEEEEEc
Confidence 86 689999998654 3 677899999999999999999865
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=8.4e-18 Score=137.33 Aligned_cols=110 Identities=12% Similarity=0.079 Sum_probs=90.9
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC--CCCCCCEEEEc
Q 048309 66 RVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP--KAKKYDRIISC 143 (288)
Q Consensus 66 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~--~~~~fD~I~~~ 143 (288)
.+.++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++++..++ +++++++.|...++ .+++||+|++.
T Consensus 19 ~~~~~~~vLDiGcG~G~~~~~la~~-~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~~~~~l~~~~~~~fD~v~~~ 96 (185)
T 3mti_A 19 VLDDESIVVDATMGNGNDTAFLAGL-SKKVYAFDVQEQALGKTSQRLSDLGI-ENTELILDGHENLDHYVREPIRAAIFN 96 (185)
T ss_dssp TCCTTCEEEESCCTTSHHHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHHTC-CCEEEEESCGGGGGGTCCSCEEEEEEE
T ss_pred hCCCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCcHHHHHhhccCCcCEEEEe
Confidence 4567899999999999999999987 88999999999999999999999888 68999998888753 46789999987
Q ss_pred c-chhhh------CHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 144 E-MMEAV------GHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 144 ~-~l~~~------~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
. .+.+. .......+++++.++|||||.+++..+.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 137 (185)
T 3mti_A 97 LGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYY 137 (185)
T ss_dssp EC-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC-
T ss_pred CCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeC
Confidence 3 33220 2256678899999999999999997654
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.1e-17 Score=138.90 Aligned_cols=112 Identities=23% Similarity=0.297 Sum_probs=97.3
Q ss_pred CCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CCCCCCEEEEccch
Q 048309 68 SKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAKKYDRIISCEMM 146 (288)
Q Consensus 68 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~~fD~I~~~~~l 146 (288)
.++.+|||+|||+|..+..++...+.+|+|+|+|+.+++.+++++...+ .+++++++|+.+++ ++++||+|++..++
T Consensus 22 ~~~~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 99 (209)
T 2p8j_A 22 NLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENN--FKLNISKGDIRKLPFKDESMSFVYSYGTI 99 (209)
T ss_dssp SSCSEEEEESCCSSSCTHHHHHHTTCEEEEEECCHHHHHHHHHHHHHHT--CCCCEEECCTTSCCSCTTCEEEEEECSCG
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcC--CceEEEECchhhCCCCCCceeEEEEcChH
Confidence 4678999999999998444433457899999999999999999988766 36899999999988 67899999999999
Q ss_pred hhhCHhhHHHHHHHHhcccccCcEEEEEeecCCCc
Q 048309 147 EAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPDA 181 (288)
Q Consensus 147 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 181 (288)
+|++.++...+++++.++|+|||.+++.++..+..
T Consensus 100 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 134 (209)
T 2p8j_A 100 FHMRKNDVKEAIDEIKRVLKPGGLACINFLTTKDE 134 (209)
T ss_dssp GGSCHHHHHHHHHHHHHHEEEEEEEEEEEEETTST
T ss_pred HhCCHHHHHHHHHHHHHHcCCCcEEEEEEecccch
Confidence 99987889999999999999999999998876543
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.75 E-value=1.2e-17 Score=143.95 Aligned_cols=143 Identities=17% Similarity=0.177 Sum_probs=111.7
Q ss_pred hhhcCChHHHHHhhhhhcCCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHH
Q 048309 25 ISRKNSLAQAHRNISYHYDLDEDEDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQ 104 (288)
Q Consensus 25 ~~~~~~~~~~~~~~a~~Yd~~~~~~l~~a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~ 104 (288)
-.....+...++.++..||.......-......+..++..... ++.+|||||||+|.++..+++. +.+|+|+|+|+.+
T Consensus 11 ~~~~~~~~~~~~~~a~~Yd~~~~~~~~~~~~~~~~~~l~~~~~-~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~ 88 (260)
T 2avn_A 11 HHMKLRSWEFYDRIARAYDSMYETPKWKLYHRLIGSFLEEYLK-NPCRVLDLGGGTGKWSLFLQER-GFEVVLVDPSKEM 88 (260)
T ss_dssp -CEECCHHHHHHHHHHHHGGGGCSHHHHHHHHHHHHHHHHHCC-SCCEEEEETCTTCHHHHHHHTT-TCEEEEEESCHHH
T ss_pred hhhhhhhcchhhHHHHHHHHhccccchhHHHHHHHHHHHHhcC-CCCeEEEeCCCcCHHHHHHHHc-CCeEEEEeCCHHH
Confidence 3455677889999999999764222112233344455554433 7789999999999999999986 7899999999999
Q ss_pred HHHHHHHHHHcCCCCceEEEEcccCCCC-CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 105 MKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 105 ~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
++.++++.. . .++++|+.+++ ++++||+|++..++.|+. .++..+++++.++|+|||.+++.+.+
T Consensus 89 l~~a~~~~~-----~--~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~-~~~~~~l~~~~~~LkpgG~l~~~~~~ 154 (260)
T 2avn_A 89 LEVAREKGV-----K--NVVEAKAEDLPFPSGAFEAVLALGDVLSYV-ENKDKAFSEIRRVLVPDGLLIATVDN 154 (260)
T ss_dssp HHHHHHHTC-----S--CEEECCTTSCCSCTTCEEEEEECSSHHHHC-SCHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred HHHHHhhcC-----C--CEEECcHHHCCCCCCCEEEEEEcchhhhcc-ccHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 999988743 1 28899999888 678999999998888774 34899999999999999999997765
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=2.9e-18 Score=147.91 Aligned_cols=106 Identities=16% Similarity=0.264 Sum_probs=92.8
Q ss_pred CCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCEEEEcc-ch
Q 048309 68 SKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCE-MM 146 (288)
Q Consensus 68 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~~~~-~l 146 (288)
.++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.|+++.. +++++++|+.+++.+++||+|++.. ++
T Consensus 49 ~~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~~------~~~~~~~d~~~~~~~~~fD~v~~~~~~l 121 (263)
T 3pfg_A 49 PKAASLLDVACGTGMHLRHLADS-FGTVEGLELSADMLAIARRRNP------DAVLHHGDMRDFSLGRRFSAVTCMFSSI 121 (263)
T ss_dssp TTCCEEEEETCTTSHHHHHHTTT-SSEEEEEESCHHHHHHHHHHCT------TSEEEECCTTTCCCSCCEEEEEECTTGG
T ss_pred CCCCcEEEeCCcCCHHHHHHHHc-CCeEEEEECCHHHHHHHHhhCC------CCEEEECChHHCCccCCcCEEEEcCchh
Confidence 35689999999999999999886 6799999999999999998742 6899999999988678999999998 99
Q ss_pred hhhC-HhhHHHHHHHHhcccccCcEEEEEeecCCC
Q 048309 147 EAVG-HEYMEEYFGCCESLLAKDGLLVLQFSSTPD 180 (288)
Q Consensus 147 ~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 180 (288)
+|++ +++...+++++.++|+|||.+++.++..+.
T Consensus 122 ~~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~ 156 (263)
T 3pfg_A 122 GHLAGQAELDAALERFAAHVLPDGVVVVEPWWFPE 156 (263)
T ss_dssp GGSCHHHHHHHHHHHHHHTEEEEEEEEECCCCCTT
T ss_pred hhcCCHHHHHHHHHHHHHhcCCCcEEEEEeccChh
Confidence 9994 357889999999999999999997654443
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.74 E-value=3.9e-17 Score=145.72 Aligned_cols=122 Identities=14% Similarity=0.202 Sum_probs=107.2
Q ss_pred HHHHHHHcCC--CCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCC
Q 048309 58 HSLLIEKARV--SKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKA 134 (288)
Q Consensus 58 ~~~l~~~~~~--~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~ 134 (288)
...+++.+.. .++.+|||+|||+|..+..+++. ++.+++++|++ .+++.+++++...++.++++++.+|+.+.+.+
T Consensus 152 ~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 230 (335)
T 2r3s_A 152 AQLIAQLVNENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEVDYG 230 (335)
T ss_dssp HHHHHHHHTC--CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTSCCC
T ss_pred HHHHHHhcccccCCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccCCCC
Confidence 3466777776 77889999999999999999987 67899999999 99999999999888877899999999886644
Q ss_pred CCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCCC
Q 048309 135 KKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPD 180 (288)
Q Consensus 135 ~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 180 (288)
+.||+|++..+++|++.++...+++++.+.|+|||++++.+...+.
T Consensus 231 ~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~ 276 (335)
T 2r3s_A 231 NDYDLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIPNS 276 (335)
T ss_dssp SCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCCCT
T ss_pred CCCcEEEEcchhccCCHHHHHHHHHHHHHhCCCCcEEEEEeecCCC
Confidence 4599999999999998778899999999999999999998876554
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.74 E-value=3.9e-17 Score=137.28 Aligned_cols=116 Identities=20% Similarity=0.394 Sum_probs=98.0
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CCC
Q 048309 57 KHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAK 135 (288)
Q Consensus 57 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~ 135 (288)
....+++.+. ++.+|||+|||+|.++..+++. +.+++|+|+|+.+++.++++....+ .+++++++|+.+++ +++
T Consensus 28 ~~~~l~~~~~--~~~~vLDlG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~~~~~~~~ 102 (227)
T 1ve3_A 28 LEPLLMKYMK--KRGKVLDLACGVGGFSFLLEDY-GFEVVGVDISEDMIRKAREYAKSRE--SNVEFIVGDARKLSFEDK 102 (227)
T ss_dssp HHHHHHHSCC--SCCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTT--CCCEEEECCTTSCCSCTT
T ss_pred HHHHHHHhcC--CCCeEEEEeccCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcC--CCceEEECchhcCCCCCC
Confidence 3344444443 4789999999999999999886 5599999999999999999988776 47999999999987 667
Q ss_pred CCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 136 KYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 136 ~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
+||+|++..++++....+...+++++.++|+|||.+++.+..
T Consensus 103 ~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 144 (227)
T 1ve3_A 103 TFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTD 144 (227)
T ss_dssp CEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred cEEEEEEcCchHhCCHHHHHHHHHHHHHHcCCCcEEEEEecC
Confidence 999999999955554478899999999999999999997765
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.5e-16 Score=144.20 Aligned_cols=122 Identities=13% Similarity=0.122 Sum_probs=107.2
Q ss_pred HHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCC
Q 048309 58 HSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKK 136 (288)
Q Consensus 58 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~ 136 (288)
...+++.+...++.+|||||||+|.++..+++. ++.+++++|+ +.+++.+++++...++.++++++.+|+.+..+ .+
T Consensus 191 ~~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~p-~~ 268 (369)
T 3gwz_A 191 AGQVAAAYDFSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFFETIP-DG 268 (369)
T ss_dssp HHHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTTCCC-SS
T ss_pred HHHHHHhCCCccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCCCCCC-CC
Confidence 456777777778899999999999999999987 7789999999 99999999999998887899999999983223 38
Q ss_pred CCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCCCc
Q 048309 137 YDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPDA 181 (288)
Q Consensus 137 fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 181 (288)
||+|++..++++++++....+++++++.|+|||++++.+...+..
T Consensus 269 ~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~ 313 (369)
T 3gwz_A 269 ADVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNLIDER 313 (369)
T ss_dssp CSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEBCCSS
T ss_pred ceEEEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCC
Confidence 999999999999977667799999999999999999988776653
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.74 E-value=1.2e-17 Score=152.02 Aligned_cols=111 Identities=18% Similarity=0.185 Sum_probs=97.4
Q ss_pred CCCCCEEEEECCcccHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHc-----C-C-CCceEEEEcccCCC------
Q 048309 67 VSKEHEVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQMKYAEMKVNEA-----G-L-QDHIRLYLCDYRQL------ 131 (288)
Q Consensus 67 ~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~giD~s~~~~~~a~~~~~~~-----g-~-~~~v~~~~~d~~~~------ 131 (288)
..++.+|||||||+|.++..+++. ++.+|+|+|+|+.+++.|+++++.. | + ..+++++++|+.++
T Consensus 81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~ 160 (383)
T 4fsd_A 81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPE 160 (383)
T ss_dssp GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSC
T ss_pred CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccC
Confidence 457889999999999999999886 4679999999999999999988754 3 2 24899999999986
Q ss_pred C-CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCC
Q 048309 132 P-KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTP 179 (288)
Q Consensus 132 ~-~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 179 (288)
+ ++++||+|++..+++|+ .++..+++++.++|||||.+++.++...
T Consensus 161 ~~~~~~fD~V~~~~~l~~~--~d~~~~l~~~~r~LkpgG~l~i~~~~~~ 207 (383)
T 4fsd_A 161 GVPDSSVDIVISNCVCNLS--TNKLALFKEIHRVLRDGGELYFSDVYAD 207 (383)
T ss_dssp CCCTTCEEEEEEESCGGGC--SCHHHHHHHHHHHEEEEEEEEEEEEEES
T ss_pred CCCCCCEEEEEEccchhcC--CCHHHHHHHHHHHcCCCCEEEEEEeccc
Confidence 6 66899999999999999 6789999999999999999999876644
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.74 E-value=3.7e-18 Score=145.07 Aligned_cols=112 Identities=20% Similarity=0.274 Sum_probs=98.0
Q ss_pred HHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CCCC
Q 048309 59 SLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGC-NYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAKK 136 (288)
Q Consensus 59 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~-~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~~ 136 (288)
..+.+.+...++.+|||||||+|.++..+++. +. +|+|+|+|+.+++.++++... .+++++++|+.+++ ++++
T Consensus 33 ~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~~~~~~~ 107 (243)
T 3bkw_A 33 PALRAMLPEVGGLRIVDLGCGFGWFCRWAHEH-GASYVLGLDLSEKMLARARAAGPD----TGITYERADLDKLHLPQDS 107 (243)
T ss_dssp HHHHHHSCCCTTCEEEEETCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHTSCS----SSEEEEECCGGGCCCCTTC
T ss_pred HHHHHhccccCCCEEEEEcCcCCHHHHHHHHC-CCCeEEEEcCCHHHHHHHHHhccc----CCceEEEcChhhccCCCCC
Confidence 34666677678899999999999999999987 55 999999999999999887543 36899999999887 6789
Q ss_pred CCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 137 YDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 137 fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
||+|++..+++|+ .+...+++++.++|+|||++++.+..
T Consensus 108 fD~v~~~~~l~~~--~~~~~~l~~~~~~L~pgG~l~~~~~~ 146 (243)
T 3bkw_A 108 FDLAYSSLALHYV--EDVARLFRTVHQALSPGGHFVFSTEH 146 (243)
T ss_dssp EEEEEEESCGGGC--SCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred ceEEEEecccccc--chHHHHHHHHHHhcCcCcEEEEEeCC
Confidence 9999999999999 67899999999999999999997643
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.6e-17 Score=148.03 Aligned_cols=121 Identities=14% Similarity=0.203 Sum_probs=107.9
Q ss_pred HHHHHcCCCC-CCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC--CCC
Q 048309 60 LLIEKARVSK-EHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP--KAK 135 (288)
Q Consensus 60 ~l~~~~~~~~-~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~--~~~ 135 (288)
.+++.++..+ +.+|||||||+|.++..+++. ++.+++++|+ +.+++.+++++...++.++++++.+|+.+.+ .++
T Consensus 169 ~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 247 (352)
T 3mcz_A 169 DVVSELGVFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGG 247 (352)
T ss_dssp HHHHTCGGGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTTC
T ss_pred HHHHhCCCcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCCC
Confidence 5667776666 889999999999999999987 6789999999 8899999999998888778999999999876 667
Q ss_pred CCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCCCc
Q 048309 136 KYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPDA 181 (288)
Q Consensus 136 ~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 181 (288)
+||+|++..+++|+++++...+++++.+.|+|||++++.+...+..
T Consensus 248 ~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~ 293 (352)
T 3mcz_A 248 AADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTMTMNDD 293 (352)
T ss_dssp CEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEECCCTT
T ss_pred CccEEEEecccccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCC
Confidence 8999999999999987778999999999999999999988776553
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.74 E-value=4.8e-17 Score=147.11 Aligned_cols=119 Identities=13% Similarity=0.160 Sum_probs=102.9
Q ss_pred HHHcCCCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCC--CCCCCCC
Q 048309 62 IEKARVSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQL--PKAKKYD 138 (288)
Q Consensus 62 ~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~--~~~~~fD 138 (288)
+..+....+.+|||||||+|.++..+++. ++.+++++|+ +.+++.|+++++..++.++++++.+|+.+. +.+++||
T Consensus 172 l~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p~~~D 250 (363)
T 3dp7_A 172 LEIVFSHHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFPTGFD 250 (363)
T ss_dssp HHHHGGGCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCCCCCS
T ss_pred HHHhcccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCCCCCCcC
Confidence 33333345679999999999999999987 7889999999 999999999998888777899999999986 3337899
Q ss_pred EEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCCCc
Q 048309 139 RIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPDA 181 (288)
Q Consensus 139 ~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 181 (288)
+|++..+++++++++...+++++++.|+|||++++.+...+..
T Consensus 251 ~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~ 293 (363)
T 3dp7_A 251 AVWMSQFLDCFSEEEVISILTRVAQSIGKDSKVYIMETLWDRQ 293 (363)
T ss_dssp EEEEESCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECCTTSC
T ss_pred EEEEechhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeeccCCc
Confidence 9999999999987788899999999999999999988765543
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.74 E-value=2.2e-17 Score=144.31 Aligned_cols=117 Identities=18% Similarity=0.277 Sum_probs=101.8
Q ss_pred HHHHHHHHc-CCCCCCEEEEECCcccHHHHHHHHc-c-CCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCC
Q 048309 57 KHSLLIEKA-RVSKEHEVLEIGCGWGTFAIEVVRQ-T-GCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPK 133 (288)
Q Consensus 57 ~~~~l~~~~-~~~~~~~vLDiGcG~G~~~~~la~~-~-~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~ 133 (288)
.+..+++.+ ...++.+|||||||+|.++..+++. + +.+|+|+|+|+.+++.+++++...+. +++++++|+.+++.
T Consensus 9 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~ 86 (284)
T 3gu3_A 9 YVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY--DSEFLEGDATEIEL 86 (284)
T ss_dssp HHHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSS--EEEEEESCTTTCCC
T ss_pred HHHHHHHHHhccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCC--ceEEEEcchhhcCc
Confidence 344455554 4567899999999999999999987 4 47999999999999999999887664 79999999999886
Q ss_pred CCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 134 AKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 134 ~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
+++||+|++..+++|+ .+...+++++.++|||||.+++.+..
T Consensus 87 ~~~fD~v~~~~~l~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~ 128 (284)
T 3gu3_A 87 NDKYDIAICHAFLLHM--TTPETMLQKMIHSVKKGGKIICFEPH 128 (284)
T ss_dssp SSCEEEEEEESCGGGC--SSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred CCCeeEEEECChhhcC--CCHHHHHHHHHHHcCCCCEEEEEecc
Confidence 6799999999999999 67889999999999999999987654
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.73 E-value=7.2e-17 Score=132.42 Aligned_cols=109 Identities=10% Similarity=0.112 Sum_probs=94.7
Q ss_pred CCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC---CCCCCCEEEEcc
Q 048309 68 SKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP---KAKKYDRIISCE 144 (288)
Q Consensus 68 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~---~~~~fD~I~~~~ 144 (288)
.++.+|||+|||+|.++..+++....+|+|+|+|+.+++.++++++..++ ++++++++|+.++. ..++||+|++..
T Consensus 43 ~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~fD~i~~~~ 121 (189)
T 3p9n_A 43 LTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGL-SGATLRRGAVAAVVAAGTTSPVDLVLADP 121 (189)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTC-SCEEEEESCHHHHHHHCCSSCCSEEEECC
T ss_pred CCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCC-CceEEEEccHHHHHhhccCCCccEEEECC
Confidence 47889999999999999988876555899999999999999999999888 68999999998864 368999999998
Q ss_pred chhhhCHhhHHHHHHHHhc--ccccCcEEEEEeecC
Q 048309 145 MMEAVGHEYMEEYFGCCES--LLAKDGLLVLQFSST 178 (288)
Q Consensus 145 ~l~~~~~~~~~~~l~~~~~--~LkpgG~l~~~~~~~ 178 (288)
.+++. .++...+++.+.+ +|+|||.+++.....
T Consensus 122 p~~~~-~~~~~~~l~~~~~~~~L~pgG~l~~~~~~~ 156 (189)
T 3p9n_A 122 PYNVD-SADVDAILAALGTNGWTREGTVAVVERATT 156 (189)
T ss_dssp CTTSC-HHHHHHHHHHHHHSSSCCTTCEEEEEEETT
T ss_pred CCCcc-hhhHHHHHHHHHhcCccCCCeEEEEEecCC
Confidence 87663 2578889999998 999999999987653
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.73 E-value=3.8e-17 Score=132.24 Aligned_cols=114 Identities=20% Similarity=0.187 Sum_probs=96.7
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCC-CC-C
Q 048309 57 KHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQ-LP-K 133 (288)
Q Consensus 57 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~-~~-~ 133 (288)
....+++.+...++.+|||+|||+|.++..+++. ++.+|+|+|+|+.+++.|+++++..+++.++ ++.+|..+ ++ .
T Consensus 13 ~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~~ 91 (178)
T 3hm2_A 13 VRALAISALAPKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDDV 91 (178)
T ss_dssp HHHHHHHHHCCCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGGC
T ss_pred HHHHHHHHhcccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhcc
Confidence 3456777788888999999999999999999987 5789999999999999999999998886688 88888855 33 2
Q ss_pred CCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 134 AKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 134 ~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
.++||+|++..+++| ..+++++.++|+|||.+++.+..
T Consensus 92 ~~~~D~i~~~~~~~~------~~~l~~~~~~L~~gG~l~~~~~~ 129 (178)
T 3hm2_A 92 PDNPDVIFIGGGLTA------PGVFAAAWKRLPVGGRLVANAVT 129 (178)
T ss_dssp CSCCSEEEECC-TTC------TTHHHHHHHTCCTTCEEEEEECS
T ss_pred CCCCCEEEECCcccH------HHHHHHHHHhcCCCCEEEEEeec
Confidence 389999999988876 57889999999999999986643
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.73 E-value=9.4e-17 Score=133.65 Aligned_cols=110 Identities=15% Similarity=0.133 Sum_probs=96.0
Q ss_pred HHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCC-CCCCCCC
Q 048309 59 SLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQ-LPKAKKY 137 (288)
Q Consensus 59 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~-~~~~~~f 137 (288)
..+++.+.+.++.+|||+|||+|.++..+++. +.+|+|+|+++.+++.|+++++..+++++++++++|+.+ ++...+|
T Consensus 45 ~~~l~~l~~~~~~~vLDlGcG~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~ 123 (204)
T 3njr_A 45 ALTLAALAPRRGELLWDIGGGSGSVSVEWCLA-GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPLP 123 (204)
T ss_dssp HHHHHHHCCCTTCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCCC
T ss_pred HHHHHhcCCCCCCEEEEecCCCCHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCCC
Confidence 35677778888999999999999999999997 889999999999999999999999986689999999998 4444689
Q ss_pred CEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEee
Q 048309 138 DRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 138 D~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
|+|++...+ +.. +++++.++|+|||++++...
T Consensus 124 D~v~~~~~~------~~~-~l~~~~~~LkpgG~lv~~~~ 155 (204)
T 3njr_A 124 EAVFIGGGG------SQA-LYDRLWEWLAPGTRIVANAV 155 (204)
T ss_dssp SEEEECSCC------CHH-HHHHHHHHSCTTCEEEEEEC
T ss_pred CEEEECCcc------cHH-HHHHHHHhcCCCcEEEEEec
Confidence 999987643 345 99999999999999998654
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.8e-17 Score=144.26 Aligned_cols=112 Identities=21% Similarity=0.330 Sum_probs=99.4
Q ss_pred HHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCC
Q 048309 59 SLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYD 138 (288)
Q Consensus 59 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD 138 (288)
..+++.+...++.+|||||||+|.++..+++ ++.+|+|+|+|+.+++.++++. .+++++++|+.+++.+++||
T Consensus 47 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~-~~~~v~gvD~s~~~~~~a~~~~------~~~~~~~~d~~~~~~~~~fD 119 (279)
T 3ccf_A 47 EDLLQLLNPQPGEFILDLGCGTGQLTEKIAQ-SGAEVLGTDNAATMIEKARQNY------PHLHFDVADARNFRVDKPLD 119 (279)
T ss_dssp CHHHHHHCCCTTCEEEEETCTTSHHHHHHHH-TTCEEEEEESCHHHHHHHHHHC------TTSCEEECCTTTCCCSSCEE
T ss_pred HHHHHHhCCCCCCEEEEecCCCCHHHHHHHh-CCCeEEEEECCHHHHHHHHhhC------CCCEEEECChhhCCcCCCcC
Confidence 4566777777889999999999999999998 5889999999999999998774 36899999999988668999
Q ss_pred EEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCC
Q 048309 139 RIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTP 179 (288)
Q Consensus 139 ~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 179 (288)
+|++..+++|+ .++..+++++.++|||||.+++.+....
T Consensus 120 ~v~~~~~l~~~--~d~~~~l~~~~~~LkpgG~l~~~~~~~~ 158 (279)
T 3ccf_A 120 AVFSNAMLHWV--KEPEAAIASIHQALKSGGRFVAEFGGKG 158 (279)
T ss_dssp EEEEESCGGGC--SCHHHHHHHHHHHEEEEEEEEEEEECTT
T ss_pred EEEEcchhhhC--cCHHHHHHHHHHhcCCCcEEEEEecCCc
Confidence 99999999999 6788999999999999999999876543
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.3e-17 Score=140.20 Aligned_cols=134 Identities=22% Similarity=0.353 Sum_probs=105.8
Q ss_pred HHHhhhhhcCCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHH
Q 048309 34 AHRNISYHYDLDEDEDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVN 113 (288)
Q Consensus 34 ~~~~~a~~Yd~~~~~~l~~a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~ 113 (288)
.|+.++..||........ ......+++.+. ++.+|||+|||+|.++..+++. .+++|+|+|+.+++.|+++..
T Consensus 3 ~y~~~a~~yd~~~~~~~~---~~~~~~~~~~~~--~~~~vLdiG~G~G~~~~~l~~~--~~v~~vD~s~~~~~~a~~~~~ 75 (243)
T 3d2l_A 3 AYEQFAYVYDELMQDVPY---PEWVAWVLEQVE--PGKRIADIGCGTGTATLLLADH--YEVTGVDLSEEMLEIAQEKAM 75 (243)
T ss_dssp ---CTTHHHHHHTTTCCH---HHHHHHHHHHSC--TTCEEEEESCTTCHHHHHHTTT--SEEEEEESCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhcccH---HHHHHHHHHHcC--CCCeEEEecCCCCHHHHHHhhC--CeEEEEECCHHHHHHHHHhhh
Confidence 366677777753222211 234445555544 5689999999999999999875 799999999999999999988
Q ss_pred HcCCCCceEEEEcccCCCCCCCCCCEEEEcc-chhhh-CHhhHHHHHHHHhcccccCcEEEEEee
Q 048309 114 EAGLQDHIRLYLCDYRQLPKAKKYDRIISCE-MMEAV-GHEYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 114 ~~g~~~~v~~~~~d~~~~~~~~~fD~I~~~~-~l~~~-~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
..+ .+++++++|+.+++..++||+|++.. +++|+ +.++...+++++.++|+|||.+++...
T Consensus 76 ~~~--~~~~~~~~d~~~~~~~~~fD~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 138 (243)
T 3d2l_A 76 ETN--RHVDFWVQDMRELELPEPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFDVH 138 (243)
T ss_dssp HTT--CCCEEEECCGGGCCCSSCEEEEEECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hcC--CceEEEEcChhhcCCCCCcCEEEEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEEcC
Confidence 766 36999999999887558999999986 89998 556788999999999999999998654
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.1e-17 Score=147.02 Aligned_cols=122 Identities=15% Similarity=0.255 Sum_probs=103.5
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCC--CceEEEEcccCCCCC
Q 048309 56 RKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQ--DHIRLYLCDYRQLPK 133 (288)
Q Consensus 56 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~--~~v~~~~~d~~~~~~ 133 (288)
..+..+++.+...++ +|||||||+|.++..+++. +.+|+|+|+|+.+++.|++++...++. .+++++++|+.+++.
T Consensus 70 ~~~~~~~~~~~~~~~-~vLDlGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~ 147 (299)
T 3g2m_A 70 SEAREFATRTGPVSG-PVLELAAGMGRLTFPFLDL-GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFAL 147 (299)
T ss_dssp HHHHHHHHHHCCCCS-CEEEETCTTTTTHHHHHTT-TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCC
T ss_pred HHHHHHHHhhCCCCC-cEEEEeccCCHHHHHHHHc-CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCc
Confidence 445566666665444 9999999999999999986 789999999999999999999876532 479999999999887
Q ss_pred CCCCCEEEEc-cchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCC
Q 048309 134 AKKYDRIISC-EMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTP 179 (288)
Q Consensus 134 ~~~fD~I~~~-~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 179 (288)
+++||+|++. .+++|+++++...+++++.++|+|||++++.+....
T Consensus 148 ~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 194 (299)
T 3g2m_A 148 DKRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAMSE 194 (299)
T ss_dssp SCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECCH
T ss_pred CCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecCc
Confidence 7899999865 667777777889999999999999999999887654
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1e-16 Score=143.12 Aligned_cols=118 Identities=11% Similarity=0.134 Sum_probs=101.8
Q ss_pred HHHHcCCCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCE
Q 048309 61 LIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDR 139 (288)
Q Consensus 61 l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~ 139 (288)
+++.+...++.+|||||||+|..+..+++. ++.+++++|+ +.+++.+++++...++.++++++.+|+.+..+ .+||+
T Consensus 161 ~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~p-~~~D~ 238 (332)
T 3i53_A 161 IAAKYDWAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFFDPLP-AGAGG 238 (332)
T ss_dssp GGGSSCCGGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCCC-CSCSE
T ss_pred HHHhCCCCCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCCCCCC-CCCcE
Confidence 334445556789999999999999999987 7789999999 99999999999998887899999999973223 38999
Q ss_pred EEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCCC
Q 048309 140 IISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPD 180 (288)
Q Consensus 140 I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 180 (288)
|++..+++|++++...++++++++.|+|||++++.+...+.
T Consensus 239 v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~ 279 (332)
T 3i53_A 239 YVLSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGD 279 (332)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECCCC-
T ss_pred EEEehhhccCCHHHHHHHHHHHHHhcCCCCEEEEEeecCCC
Confidence 99999999998777899999999999999999998876654
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=6.1e-18 Score=148.54 Aligned_cols=107 Identities=18% Similarity=0.364 Sum_probs=91.0
Q ss_pred CCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcC-------------------------------
Q 048309 69 KEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAG------------------------------- 116 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g------------------------------- 116 (288)
++.+|||||||+|.++..+++. ++.+|+|+|+|+.+++.|+++++..+
T Consensus 46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (292)
T 3g07_A 46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSC 125 (292)
T ss_dssp TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC-----------------------------------
T ss_pred CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccccc
Confidence 6789999999999999999997 56899999999999999998876543
Q ss_pred --------------------------CCCceEEEEcccCCCC------CCCCCCEEEEccchhhh----CHhhHHHHHHH
Q 048309 117 --------------------------LQDHIRLYLCDYRQLP------KAKKYDRIISCEMMEAV----GHEYMEEYFGC 160 (288)
Q Consensus 117 --------------------------~~~~v~~~~~d~~~~~------~~~~fD~I~~~~~l~~~----~~~~~~~~l~~ 160 (288)
++.+++++++|+.... ..++||+|+|..+++|+ +.+.+..++++
T Consensus 126 ~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~~ 205 (292)
T 3g07_A 126 FPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRR 205 (292)
T ss_dssp ----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHHH
Confidence 2258999999998654 46899999999999887 45588999999
Q ss_pred HhcccccCcEEEEEe
Q 048309 161 CESLLAKDGLLVLQF 175 (288)
Q Consensus 161 ~~~~LkpgG~l~~~~ 175 (288)
++++|+|||+|++..
T Consensus 206 ~~~~LkpGG~lil~~ 220 (292)
T 3g07_A 206 IYRHLRPGGILVLEP 220 (292)
T ss_dssp HHHHEEEEEEEEEEC
T ss_pred HHHHhCCCcEEEEec
Confidence 999999999999853
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.6e-18 Score=147.64 Aligned_cols=139 Identities=17% Similarity=0.072 Sum_probs=104.4
Q ss_pred ChHHHHHhhhhhcCCCCCCCHH-------HH-HHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCC
Q 048309 30 SLAQAHRNISYHYDLDEDEDLK-------VA-QMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLS 101 (288)
Q Consensus 30 ~~~~~~~~~a~~Yd~~~~~~l~-------~a-~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s 101 (288)
.....|...+..||.... .+. .. ....+..+.+.+ ..+|.+|||||||+|..+..+++..+.+++|||+|
T Consensus 15 ~~~~~w~~~~~~yd~~~~-~l~~~g~~vm~~we~~~m~~~a~~~-~~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~ 92 (236)
T 3orh_A 15 NCSPAWGAAPAAYDAADT-HLRILGKPVMERWETPYMHALAAAA-SSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECN 92 (236)
T ss_dssp BCHHHHTTSCEEECTTSS-EEEETTEEEEEGGGHHHHHHHHHHH-TTTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECC
T ss_pred hhhhhHhcCcCCCCcchh-hhhhcCHHHHHHHHHHHHHHHHHhh-ccCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCC
Confidence 345677887888886521 100 01 112233344433 35788999999999999999988745689999999
Q ss_pred HHHHHHHHHHHHHcCCCCceEEEEcccCCCC---CCCCCCEEEEc-----cchhhhCHhhHHHHHHHHhcccccCcEEEE
Q 048309 102 AEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP---KAKKYDRIISC-----EMMEAVGHEYMEEYFGCCESLLAKDGLLVL 173 (288)
Q Consensus 102 ~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~---~~~~fD~I~~~-----~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~ 173 (288)
+.+++.|+++.+..+. +++++.+|+.+.. ++++||.|++. ..++|+ .+...+++++.++|||||+|++
T Consensus 93 ~~~~~~a~~~~~~~~~--~~~~~~~~a~~~~~~~~~~~FD~i~~D~~~~~~~~~~~--~~~~~~~~e~~rvLkPGG~l~f 168 (236)
T 3orh_A 93 DGVFQRLRDWAPRQTH--KVIPLKGLWEDVAPTLPDGHFDGILYDTYPLSEETWHT--HQFNFIKNHAFRLLKPGGVLTY 168 (236)
T ss_dssp HHHHHHHHHHGGGCSS--EEEEEESCHHHHGGGSCTTCEEEEEECCCCCBGGGTTT--HHHHHHHHTHHHHEEEEEEEEE
T ss_pred HHHHHHHHHHHhhCCC--ceEEEeehHHhhcccccccCCceEEEeeeecccchhhh--cchhhhhhhhhheeCCCCEEEE
Confidence 9999999999887764 7899999987643 56889999863 445666 7889999999999999999987
Q ss_pred E
Q 048309 174 Q 174 (288)
Q Consensus 174 ~ 174 (288)
.
T Consensus 169 ~ 169 (236)
T 3orh_A 169 C 169 (236)
T ss_dssp C
T ss_pred E
Confidence 3
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.72 E-value=1.5e-16 Score=132.04 Aligned_cols=113 Identities=14% Similarity=0.190 Sum_probs=98.7
Q ss_pred HHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CCC
Q 048309 58 HSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAK 135 (288)
Q Consensus 58 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~ 135 (288)
...++..+.+.++.+|||+|||+|.++..+++. +..+|+|+|+|+.+++.|+++++..++ ++++++.+|+.+.. ..+
T Consensus 29 ~~~~l~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~ 107 (204)
T 3e05_A 29 RAVTLSKLRLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVA-RNVTLVEAFAPEGLDDLP 107 (204)
T ss_dssp HHHHHHHTTCCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTC-TTEEEEECCTTTTCTTSC
T ss_pred HHHHHHHcCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeCChhhhhhcCC
Confidence 356778888889999999999999999999987 458999999999999999999998888 68999999997654 447
Q ss_pred CCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEee
Q 048309 136 KYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 136 ~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
+||+|++..+++ +...+++++.++|+|||++++...
T Consensus 108 ~~D~i~~~~~~~-----~~~~~l~~~~~~LkpgG~l~~~~~ 143 (204)
T 3e05_A 108 DPDRVFIGGSGG-----MLEEIIDAVDRRLKSEGVIVLNAV 143 (204)
T ss_dssp CCSEEEESCCTT-----CHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred CCCEEEECCCCc-----CHHHHHHHHHHhcCCCeEEEEEec
Confidence 899999987765 457899999999999999998553
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.2e-17 Score=140.51 Aligned_cols=106 Identities=15% Similarity=0.167 Sum_probs=88.8
Q ss_pred CCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCC----CCCCCCCEEEEc
Q 048309 69 KEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQL----PKAKKYDRIISC 143 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~----~~~~~fD~I~~~ 143 (288)
++.+|||||||+|..+..+++. ++..|+|||+|+.+++.|+++++..+++ |++++++|+.++ .++++||.|++.
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~-nv~~~~~Da~~~l~~~~~~~~~d~v~~~ 112 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLS-NLRVMCHDAVEVLHKMIPDNSLRMVQLF 112 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCS-SEEEECSCHHHHHHHHSCTTCEEEEEEE
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCC-cEEEEECCHHHHHHHHcCCCChheEEEe
Confidence 5679999999999999999987 6789999999999999999999998884 799999999874 256899999998
Q ss_pred cchhhhCHhhH------HHHHHHHhcccccCcEEEEEe
Q 048309 144 EMMEAVGHEYM------EEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 144 ~~l~~~~~~~~------~~~l~~~~~~LkpgG~l~~~~ 175 (288)
+...+...... ..+++++.++|||||.+++.+
T Consensus 113 ~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~t 150 (218)
T 3dxy_A 113 FPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMAT 150 (218)
T ss_dssp SCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEe
Confidence 55433211111 369999999999999999865
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.8e-18 Score=147.03 Aligned_cols=149 Identities=15% Similarity=0.053 Sum_probs=108.5
Q ss_pred hhhcCChHHHHHhhhhhcCCCCCC-------CHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEE
Q 048309 25 ISRKNSLAQAHRNISYHYDLDEDE-------DLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTG 97 (288)
Q Consensus 25 ~~~~~~~~~~~~~~a~~Yd~~~~~-------~l~~a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~g 97 (288)
....+.....|...+..||..+.. .+..-....+..+...+ ..++.+|||||||+|.++..+++....+|+|
T Consensus 10 ~~~~~~~~~~~~~~~~~Yd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~g 88 (236)
T 1zx0_A 10 FAPGENCSPAWGAAPAAYDAADTHLRILGKPVMERWETPYMHALAAAA-SSKGGRVLEVGFGMAIAASKVQEAPIDEHWI 88 (236)
T ss_dssp SCTTCBCHHHHTTSCEEECTTSCEEEETTEEEEEGGGHHHHHHHHHHH-TTTCEEEEEECCTTSHHHHHHHTSCEEEEEE
T ss_pred cCCcCCCchhhhcchhhcCCccchhhccchHHHHHHHHHHHHHHHhhc-CCCCCeEEEEeccCCHHHHHHHhcCCCeEEE
Confidence 344556678888888899954210 01111112223333333 4578899999999999999997753448999
Q ss_pred EcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCC--C-CCCCCCEEEE-ccch--hhhCHhhHHHHHHHHhcccccCcEE
Q 048309 98 ITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQL--P-KAKKYDRIIS-CEMM--EAVGHEYMEEYFGCCESLLAKDGLL 171 (288)
Q Consensus 98 iD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~--~-~~~~fD~I~~-~~~l--~~~~~~~~~~~l~~~~~~LkpgG~l 171 (288)
+|+|+.|++.|+++.+..+ .+++++++|+.++ + ++++||+|++ .+.+ +......+..+++++.++|||||++
T Consensus 89 vD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l 166 (236)
T 1zx0_A 89 IECNDGVFQRLRDWAPRQT--HKVIPLKGLWEDVAPTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVL 166 (236)
T ss_dssp EECCHHHHHHHHHHGGGCS--SEEEEEESCHHHHGGGSCTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEE
T ss_pred EcCCHHHHHHHHHHHHhcC--CCeEEEecCHHHhhcccCCCceEEEEECCcccchhhhhhhhHHHHHHHHHHhcCCCeEE
Confidence 9999999999999887766 4799999999887 5 5689999999 4443 2222356678899999999999999
Q ss_pred EEEee
Q 048309 172 VLQFS 176 (288)
Q Consensus 172 ~~~~~ 176 (288)
++.+.
T Consensus 167 ~~~~~ 171 (236)
T 1zx0_A 167 TYCNL 171 (236)
T ss_dssp EECCH
T ss_pred EEEec
Confidence 98543
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.72 E-value=4.1e-17 Score=137.32 Aligned_cols=139 Identities=18% Similarity=0.196 Sum_probs=108.3
Q ss_pred hHHHHHhhhhhcCCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc--cCCEEEEEcCCHHHHHHH
Q 048309 31 LAQAHRNISYHYDLDEDEDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQMKYA 108 (288)
Q Consensus 31 ~~~~~~~~a~~Yd~~~~~~l~~a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~giD~s~~~~~~a 108 (288)
+-..++.++..++.. ..+.....+.+..++.. .++.+|||||||+|..+..+++. .+.+|+++|+++.+++.|
T Consensus 25 v~~~~~~~~~~~~~~--~~~~~~~~~~l~~l~~~---~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a 99 (221)
T 3u81_A 25 VLEAIDTYCTQKEWA--MNVGDAKGQIMDAVIRE---YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAIT 99 (221)
T ss_dssp HHHHHHHHHHHHTCG--GGCCHHHHHHHHHHHHH---HCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHH
T ss_pred HHHHHHHHhhhcCcC--cccCHHHHHHHHHHHHh---cCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHH
Confidence 445666666666643 23334445555555554 35679999999999999999985 378999999999999999
Q ss_pred HHHHHHcCCCCceEEEEcccCCC-C-CC-----CCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 109 EMKVNEAGLQDHIRLYLCDYRQL-P-KA-----KKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 109 ~~~~~~~g~~~~v~~~~~d~~~~-~-~~-----~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
+++++..++.++++++++|+.+. + .. ++||+|++....++. .....+++.+ ++|+|||++++.+..
T Consensus 100 ~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD~V~~d~~~~~~--~~~~~~~~~~-~~LkpgG~lv~~~~~ 172 (221)
T 3u81_A 100 QQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDMVFLDHWKDRY--LPDTLLLEKC-GLLRKGTVLLADNVI 172 (221)
T ss_dssp HHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCSEEEECSCGGGH--HHHHHHHHHT-TCCCTTCEEEESCCC
T ss_pred HHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceEEEEEcCCcccc--hHHHHHHHhc-cccCCCeEEEEeCCC
Confidence 99999999877899999998653 2 22 689999999888777 5666788888 999999999986554
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.72 E-value=1.2e-16 Score=130.68 Aligned_cols=119 Identities=23% Similarity=0.415 Sum_probs=102.9
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCC-ceEEEEcccCCCCCCC
Q 048309 57 KHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQD-HIRLYLCDYRQLPKAK 135 (288)
Q Consensus 57 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~-~v~~~~~d~~~~~~~~ 135 (288)
....+++.+...++.+|||+|||+|.++..+++. +.+++|+|+++.+++.+++++...+++. +++++.+|+.+....+
T Consensus 40 ~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 118 (194)
T 1dus_A 40 GTKILVENVVVDKDDDILDLGCGYGVIGIALADE-VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDR 118 (194)
T ss_dssp HHHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTS
T ss_pred HHHHHHHHcccCCCCeEEEeCCCCCHHHHHHHHc-CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccccC
Confidence 3456677777778899999999999999999987 8899999999999999999999888743 3999999998865667
Q ss_pred CCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 136 KYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 136 ~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
+||+|++..++++. ......+++++.++|+|||.+++.+..
T Consensus 119 ~~D~v~~~~~~~~~-~~~~~~~l~~~~~~L~~gG~l~~~~~~ 159 (194)
T 1dus_A 119 KYNKIITNPPIRAG-KEVLHRIIEEGKELLKDNGEIWVVIQT 159 (194)
T ss_dssp CEEEEEECCCSTTC-HHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred CceEEEECCCcccc-hhHHHHHHHHHHHHcCCCCEEEEEECC
Confidence 99999999887762 267889999999999999999997664
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.72 E-value=1.1e-17 Score=148.59 Aligned_cols=150 Identities=16% Similarity=0.154 Sum_probs=118.4
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc-c-CCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-
Q 048309 56 RKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-T-GCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP- 132 (288)
Q Consensus 56 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~-~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~- 132 (288)
.....+++.+.+.++.+|||||||+|.++..+++. . ..+|+|+|+|+++++.|+++++..+++ +++++.+|+.+..
T Consensus 62 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~-~v~~~~~d~~~~~~ 140 (317)
T 1dl5_A 62 SLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIE-NVIFVCGDGYYGVP 140 (317)
T ss_dssp HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCGGGCCG
T ss_pred HHHHHHHHhcCCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CeEEEECChhhccc
Confidence 56778888888889999999999999999999987 3 357999999999999999999998885 6999999998855
Q ss_pred CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCC--Ccccccc-cCchhhHhhhccCCCCCCCHHHH
Q 048309 133 KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTP--DARYNEY-RLSSDFIKEYIFPGGCLPSLSRI 209 (288)
Q Consensus 133 ~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~--~~~~~~~-~~~~~~~~~~i~~~~~~p~~~~~ 209 (288)
..++||+|++..+++|++ +++.+.|||||++++...... ......+ +....|..++++|+..+|....+
T Consensus 141 ~~~~fD~Iv~~~~~~~~~--------~~~~~~LkpgG~lvi~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~ 212 (317)
T 1dl5_A 141 EFSPYDVIFVTVGVDEVP--------ETWFTQLKEGGRVIVPINLKLSRRQPAFLFKKKDPYLVGNYKLETRFITAGGNL 212 (317)
T ss_dssp GGCCEEEEEECSBBSCCC--------HHHHHHEEEEEEEEEEBCBGGGTBCEEEEEEEETTEEEEEEEEECCCCBCCGGG
T ss_pred cCCCeEEEEEcCCHHHHH--------HHHHHhcCCCcEEEEEECCCCcccceEEEEEEeCCcEEEEEeccEEEEEccCcc
Confidence 567899999999999984 467789999999999865432 1222222 11235677888888888876554
Q ss_pred HHHHH
Q 048309 210 TSAMA 214 (288)
Q Consensus 210 ~~~~~ 214 (288)
...++
T Consensus 213 ~~~~~ 217 (317)
T 1dl5_A 213 GNLLE 217 (317)
T ss_dssp SCHHH
T ss_pred ccccc
Confidence 43333
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.71 E-value=7.7e-17 Score=135.88 Aligned_cols=141 Identities=15% Similarity=0.155 Sum_probs=109.9
Q ss_pred cCChHHHHHhhhhhcCCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc--cCCEEEEEcCCHHHH
Q 048309 28 KNSLAQAHRNISYHYDLDEDEDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQM 105 (288)
Q Consensus 28 ~~~~~~~~~~~a~~Yd~~~~~~l~~a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~giD~s~~~~ 105 (288)
.+..-......+...... .+...+.+.+..++...+.+++.+|||||||+|..+..+++. ++.+|+++|+++.++
T Consensus 18 ~~~~l~~~~~~a~~~~~p---~i~~~~~~~l~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~ 94 (221)
T 3dr5_A 18 TDAAVARAREDAAEFGLP---APDEMTGQLLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQ 94 (221)
T ss_dssp CCHHHHHHHHHHHHTTCC---CCCHHHHHHHHHHHHHSCCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHH
T ss_pred CCHHHHHHHHHHHHcCCC---CCCHHHHHHHHHHHHhhCCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHH
Confidence 344434444444444332 344566677777887776666679999999999999999986 368999999999999
Q ss_pred HHHHHHHHHcCCC-CceEEEEcccCCCC---CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEee
Q 048309 106 KYAEMKVNEAGLQ-DHIRLYLCDYRQLP---KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 106 ~~a~~~~~~~g~~-~~v~~~~~d~~~~~---~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
+.|+++++..|+. ++++++++|+.+.. .+++||+|++.... .+...+++++.++|+|||++++.+.
T Consensus 95 ~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~d~~~-----~~~~~~l~~~~~~LkpGG~lv~dn~ 164 (221)
T 3dr5_A 95 RQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFGQVSP-----MDLKALVDAAWPLLRRGGALVLADA 164 (221)
T ss_dssp HHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEECCCT-----TTHHHHHHHHHHHEEEEEEEEETTT
T ss_pred HHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEEcCcH-----HHHHHHHHHHHHHcCCCcEEEEeCC
Confidence 9999999999986 68999999987753 26899999987643 3457799999999999999998443
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.71 E-value=3.6e-17 Score=134.87 Aligned_cols=114 Identities=13% Similarity=0.131 Sum_probs=95.5
Q ss_pred HcCCCCCCEEEEECCcccHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC--CCCCCCE
Q 048309 64 KARVSKEHEVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP--KAKKYDR 139 (288)
Q Consensus 64 ~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~--~~~~fD~ 139 (288)
...++++.+|||+|||+|.++..+++. +..+|+|+|+++.+++.|+++++..++..+++++++|+.+++ .+++||+
T Consensus 17 ~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~ 96 (197)
T 3eey_A 17 KMFVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKA 96 (197)
T ss_dssp HHHCCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEE
T ss_pred HhcCCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceE
Confidence 334568889999999999999999987 456999999999999999999999888678999999998875 5589999
Q ss_pred EEEccchhh-------hCHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 140 IISCEMMEA-------VGHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 140 I~~~~~l~~-------~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
|++...+.. ....+...+++++.++|+|||++++..+.
T Consensus 97 v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~ 141 (197)
T 3eey_A 97 VMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYY 141 (197)
T ss_dssp EEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred EEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEcc
Confidence 999875511 12245678999999999999999997654
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.7e-17 Score=136.96 Aligned_cols=112 Identities=18% Similarity=0.137 Sum_probs=99.2
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CC
Q 048309 56 RKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KA 134 (288)
Q Consensus 56 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~ 134 (288)
.....+++.+...++.+|||+|||+|..+..+++. +.+|+++|+++.+++.++++++..+++ +++++.+|+.+.. ..
T Consensus 64 ~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~ 141 (210)
T 3lbf_A 64 YMVARMTELLELTPQSRVLEIGTGSGYQTAILAHL-VQHVCSVERIKGLQWQARRRLKNLDLH-NVSTRHGDGWQGWQAR 141 (210)
T ss_dssp HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCGGGCCGGG
T ss_pred HHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCCC-ceEEEECCcccCCccC
Confidence 45566778888889999999999999999999987 789999999999999999999998885 8999999998866 56
Q ss_pred CCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 135 KKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 135 ~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
++||+|++..+++|++. .+.+.|+|||++++....
T Consensus 142 ~~~D~i~~~~~~~~~~~--------~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 142 APFDAIIVTAAPPEIPT--------ALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp CCEEEEEESSBCSSCCT--------HHHHTEEEEEEEEEEECS
T ss_pred CCccEEEEccchhhhhH--------HHHHhcccCcEEEEEEcC
Confidence 89999999999999852 478999999999997665
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.7e-17 Score=140.68 Aligned_cols=116 Identities=17% Similarity=0.283 Sum_probs=95.3
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCC
Q 048309 57 KHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKK 136 (288)
Q Consensus 57 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~ 136 (288)
.+..++.... .++.+|||+|||+|.++..+++. +.+++|+|+|+.+++.++++. .+++++++|+.+++.+++
T Consensus 29 ~~~~~l~~~~-~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~~~~------~~~~~~~~d~~~~~~~~~ 100 (239)
T 3bxo_A 29 DIADLVRSRT-PEASSLLDVACGTGTHLEHFTKE-FGDTAGLELSEDMLTHARKRL------PDATLHQGDMRDFRLGRK 100 (239)
T ss_dssp HHHHHHHHHC-TTCCEEEEETCTTSHHHHHHHHH-HSEEEEEESCHHHHHHHHHHC------TTCEEEECCTTTCCCSSC
T ss_pred HHHHHHHHhc-CCCCeEEEecccCCHHHHHHHHh-CCcEEEEeCCHHHHHHHHHhC------CCCEEEECCHHHcccCCC
Confidence 3334444433 56789999999999999999987 449999999999999998874 368999999998876679
Q ss_pred CCEEEEc-cchhhhC-HhhHHHHHHHHhcccccCcEEEEEeecCCC
Q 048309 137 YDRIISC-EMMEAVG-HEYMEEYFGCCESLLAKDGLLVLQFSSTPD 180 (288)
Q Consensus 137 fD~I~~~-~~l~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 180 (288)
||+|+|. .+++|++ +++...+++++.++|+|||.+++.++..+.
T Consensus 101 ~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~ 146 (239)
T 3bxo_A 101 FSAVVSMFSSVGYLKTTEELGAAVASFAEHLEPGGVVVVEPWWFPE 146 (239)
T ss_dssp EEEEEECTTGGGGCCSHHHHHHHHHHHHHTEEEEEEEEECCCCCTT
T ss_pred CcEEEEcCchHhhcCCHHHHHHHHHHHHHhcCCCeEEEEEeccCcc
Confidence 9999965 4899984 467889999999999999999998765443
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.71 E-value=5.3e-17 Score=136.99 Aligned_cols=111 Identities=21% Similarity=0.355 Sum_probs=97.6
Q ss_pred CCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCC----CCceEEEEcccCCCC-CCCCCCEEEE
Q 048309 68 SKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGL----QDHIRLYLCDYRQLP-KAKKYDRIIS 142 (288)
Q Consensus 68 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~----~~~v~~~~~d~~~~~-~~~~fD~I~~ 142 (288)
+++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.+++++...++ ..+++++++|+.+++ .+++||+|++
T Consensus 29 ~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~ 107 (235)
T 3sm3_A 29 QEDDEILDIGCGSGKISLELASK-GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAVM 107 (235)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEEE
T ss_pred CCCCeEEEECCCCCHHHHHHHhC-CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEEE
Confidence 47889999999999999999997 78999999999999999999887765 236899999999988 6789999999
Q ss_pred ccchhhhC-HhhHHHHHHHHhcccccCcEEEEEeecCC
Q 048309 143 CEMMEAVG-HEYMEEYFGCCESLLAKDGLLVLQFSSTP 179 (288)
Q Consensus 143 ~~~l~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 179 (288)
..+++|++ +.....+++++.++|+|||++++.++...
T Consensus 108 ~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 145 (235)
T 3sm3_A 108 QAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQN 145 (235)
T ss_dssp ESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBCC
T ss_pred cchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCcc
Confidence 99999993 34455999999999999999999887653
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.71 E-value=1.9e-16 Score=130.95 Aligned_cols=115 Identities=15% Similarity=0.156 Sum_probs=97.7
Q ss_pred HHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CCCC
Q 048309 58 HSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAKK 136 (288)
Q Consensus 58 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~~ 136 (288)
+..++..+. ++ +|||+|||+|.++..+++. +.+|+|+|+|+.+++.++++....+. +++++++|+.+++ ++++
T Consensus 21 l~~~~~~~~--~~-~vLdiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~ 94 (202)
T 2kw5_A 21 LVSVANQIP--QG-KILCLAEGEGRNACFLASL-GYEVTAVDQSSVGLAKAKQLAQEKGV--KITTVQSNLADFDIVADA 94 (202)
T ss_dssp HHHHHHHSC--SS-EEEECCCSCTHHHHHHHTT-TCEEEEECSSHHHHHHHHHHHHHHTC--CEEEECCBTTTBSCCTTT
T ss_pred HHHHHHhCC--CC-CEEEECCCCCHhHHHHHhC-CCeEEEEECCHHHHHHHHHHHHhcCC--ceEEEEcChhhcCCCcCC
Confidence 344455543 56 9999999999999999986 77999999999999999999988775 7999999999887 6689
Q ss_pred CCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCCC
Q 048309 137 YDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPD 180 (288)
Q Consensus 137 fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 180 (288)
||+|++.. .|++.++...+++++.++|+|||.+++.+.....
T Consensus 95 fD~v~~~~--~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~ 136 (202)
T 2kw5_A 95 WEGIVSIF--CHLPSSLRQQLYPKVYQGLKPGGVFILEGFAPEQ 136 (202)
T ss_dssp CSEEEEEC--CCCCHHHHHHHHHHHHTTCCSSEEEEEEEECTTT
T ss_pred ccEEEEEh--hcCCHHHHHHHHHHHHHhcCCCcEEEEEEecccc
Confidence 99999954 4556578999999999999999999998876544
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.8e-16 Score=143.64 Aligned_cols=116 Identities=18% Similarity=0.167 Sum_probs=102.0
Q ss_pred HHHHHHcCCCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCC
Q 048309 59 SLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKY 137 (288)
Q Consensus 59 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~f 137 (288)
..+++.+...++.+|||||||+|.++..+++. ++.+++++|+ +.+++.+++++...++.++++++.+|+.+..+ ..|
T Consensus 172 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~ 249 (374)
T 1qzz_A 172 EAPADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKPLP-VTA 249 (374)
T ss_dssp HHHHHTSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCCS-CCE
T ss_pred HHHHHhCCCCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCcCC-CCC
Confidence 45666777778899999999999999999987 6789999999 99999999999998887789999999976223 359
Q ss_pred CEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEee
Q 048309 138 DRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 138 D~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
|+|++..+++|++.+....+++++.++|+|||++++.+.
T Consensus 250 D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 288 (374)
T 1qzz_A 250 DVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDR 288 (374)
T ss_dssp EEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CEEEEeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence 999999999999766667999999999999999999877
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=4.2e-17 Score=142.72 Aligned_cols=116 Identities=22% Similarity=0.310 Sum_probs=95.8
Q ss_pred HHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCC---CceEEEEcccCCCC----C
Q 048309 61 LIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQ---DHIRLYLCDYRQLP----K 133 (288)
Q Consensus 61 l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~---~~v~~~~~d~~~~~----~ 133 (288)
+.+.+...++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.|+++....+.. .++.+..+|+.+++ .
T Consensus 49 l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 127 (293)
T 3thr_A 49 LLGLLRQHGCHRVLDVACGTGVDSIMLVEE-GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPA 127 (293)
T ss_dssp HHHHHHHTTCCEEEETTCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCC
T ss_pred HHHHhcccCCCEEEEecCCCCHHHHHHHHC-CCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCcccccc
Confidence 333333456789999999999999999987 779999999999999999887443321 35789999998865 5
Q ss_pred CCCCCEEEEc-cchhhhCH-----hhHHHHHHHHhcccccCcEEEEEeec
Q 048309 134 AKKYDRIISC-EMMEAVGH-----EYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 134 ~~~fD~I~~~-~~l~~~~~-----~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
+++||+|++. .+++|++. ++...+++++.++|||||.+++....
T Consensus 128 ~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (293)
T 3thr_A 128 GDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRN 177 (293)
T ss_dssp TTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred CCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 6899999998 89999954 45899999999999999999997653
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=5.5e-17 Score=146.52 Aligned_cols=137 Identities=15% Similarity=0.179 Sum_probs=109.2
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHH-------H
Q 048309 42 YDLDEDEDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGC-NYTGITLSAEQMKYAEMKV-------N 113 (288)
Q Consensus 42 Yd~~~~~~l~~a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~-~v~giD~s~~~~~~a~~~~-------~ 113 (288)
|.........+.....+..+++.+.+.++.+|||||||+|.++..++...++ +|+|||+++.+++.|+++. +
T Consensus 146 Ye~Fs~~vYGEt~~~~i~~il~~l~l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~ 225 (438)
T 3uwp_A 146 YEPFSPEVYGETSFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMK 225 (438)
T ss_dssp CSSSCGGGGGGTHHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCcccCCCCHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHH
Confidence 5544344445556677888999999999999999999999999999876455 5999999999999998754 3
Q ss_pred HcCC-CCceEEEEcccCCCC-CC--CCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCCCc
Q 048309 114 EAGL-QDHIRLYLCDYRQLP-KA--KKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPDA 181 (288)
Q Consensus 114 ~~g~-~~~v~~~~~d~~~~~-~~--~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 181 (288)
..|+ ..+++++++|+.+++ .+ ..||+|+++..+. . ++....+.++.+.|||||+|++.+...+..
T Consensus 226 ~~Gl~~~rVefi~GD~~~lp~~d~~~~aDVVf~Nn~~F-~--pdl~~aL~Ei~RvLKPGGrIVssE~f~p~d 294 (438)
T 3uwp_A 226 WYGKKHAEYTLERGDFLSEEWRERIANTSVIFVNNFAF-G--PEVDHQLKERFANMKEGGRIVSSKPFAPLN 294 (438)
T ss_dssp HHTBCCCEEEEEECCTTSHHHHHHHHTCSEEEECCTTC-C--HHHHHHHHHHHTTSCTTCEEEESSCSSCTT
T ss_pred HhCCCCCCeEEEECcccCCccccccCCccEEEEccccc-C--chHHHHHHHHHHcCCCCcEEEEeecccCCC
Confidence 4455 258999999999877 22 4799999987653 3 677888899999999999999987665543
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.70 E-value=4.7e-17 Score=140.69 Aligned_cols=112 Identities=15% Similarity=0.134 Sum_probs=88.8
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCC----------------------------
Q 048309 66 RVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGL---------------------------- 117 (288)
Q Consensus 66 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~---------------------------- 117 (288)
...++.+|||||||+|.++..++.....+|+|+|+|+.|++.|+++++....
T Consensus 52 ~~~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~ 131 (263)
T 2a14_A 52 GGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKL 131 (263)
T ss_dssp TSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred CCCCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHH
Confidence 4567889999999999887776654223799999999999999987754320
Q ss_pred CCceE-EEEcccCCC-C----CCCCCCEEEEccchhhhC--HhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 118 QDHIR-LYLCDYRQL-P----KAKKYDRIISCEMMEAVG--HEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 118 ~~~v~-~~~~d~~~~-~----~~~~fD~I~~~~~l~~~~--~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
..++. ++++|+.+. + ..++||+|++..+++|+. .+++..++++++++|||||.|++.+..
T Consensus 132 ~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~ 199 (263)
T 2a14_A 132 RAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTL 199 (263)
T ss_dssp HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEES
T ss_pred HhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEee
Confidence 01244 899999874 2 246899999999999973 367889999999999999999998754
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=5.3e-16 Score=139.94 Aligned_cols=121 Identities=16% Similarity=0.273 Sum_probs=106.7
Q ss_pred HHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCC
Q 048309 58 HSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKK 136 (288)
Q Consensus 58 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~ 136 (288)
...+++.+...++.+|||||||+|.++..+++. ++.+++++|+ +.+++.++++++..+++++++++.+|+.+.+.+ .
T Consensus 179 ~~~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~ 256 (359)
T 1x19_A 179 IQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYP-E 256 (359)
T ss_dssp HHHHHHHCCCTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTSCCC-C
T ss_pred HHHHHHhcCCCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccCCCC-C
Confidence 456777777788899999999999999999987 6789999999 999999999999988877799999999987632 3
Q ss_pred CCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCCC
Q 048309 137 YDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPD 180 (288)
Q Consensus 137 fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 180 (288)
+|+|++..+++|+++++...+++++.+.|+|||++++.+...+.
T Consensus 257 ~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~ 300 (359)
T 1x19_A 257 ADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDD 300 (359)
T ss_dssp CSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEECCCC
T ss_pred CCEEEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEecccCC
Confidence 49999999999997777899999999999999999998877654
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.69 E-value=1.1e-16 Score=129.79 Aligned_cols=120 Identities=13% Similarity=0.108 Sum_probs=97.5
Q ss_pred HHHHHHHHcC-CCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCC-C-C
Q 048309 57 KHSLLIEKAR-VSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQL-P-K 133 (288)
Q Consensus 57 ~~~~l~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~-~-~ 133 (288)
....+++.+. ..++.+|||+|||+|.++..+++.+..+|+|+|+|+.+++.|+++++..+++++++++.+|+.+. + .
T Consensus 18 ~~~~~~~~l~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 97 (177)
T 2esr_A 18 VRGAIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCL 97 (177)
T ss_dssp CHHHHHHHHCSCCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHB
T ss_pred HHHHHHHHHHhhcCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhh
Confidence 3445556655 56788999999999999999998744699999999999999999999988866899999999874 3 4
Q ss_pred CCCCCEEEEccchhhhCHhhHHHHHHHHh--cccccCcEEEEEeecCC
Q 048309 134 AKKYDRIISCEMMEAVGHEYMEEYFGCCE--SLLAKDGLLVLQFSSTP 179 (288)
Q Consensus 134 ~~~fD~I~~~~~l~~~~~~~~~~~l~~~~--~~LkpgG~l~~~~~~~~ 179 (288)
.++||+|++...++. ......++.+. ++|+|||.+++......
T Consensus 98 ~~~fD~i~~~~~~~~---~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~ 142 (177)
T 2esr_A 98 TGRFDLVFLDPPYAK---ETIVATIEALAAKNLLSEQVMVVCETDKTV 142 (177)
T ss_dssp CSCEEEEEECCSSHH---HHHHHHHHHHHHTTCEEEEEEEEEEEETTC
T ss_pred cCCCCEEEECCCCCc---chHHHHHHHHHhCCCcCCCcEEEEEECCcc
Confidence 567999999877643 34566667776 99999999999876543
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.6e-16 Score=140.44 Aligned_cols=120 Identities=12% Similarity=0.144 Sum_probs=104.0
Q ss_pred HHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCC
Q 048309 58 HSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKK 136 (288)
Q Consensus 58 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~ 136 (288)
...+++.++..+ .+|||+|||+|..+..+++. ++.+++++|+ +.+++.+++++...++.++++++.+|+.+ +.+++
T Consensus 157 ~~~~~~~~~~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~ 233 (334)
T 2ip2_A 157 FHEIPRLLDFRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ-EVPSN 233 (334)
T ss_dssp HHHHHHHSCCTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT-CCCSS
T ss_pred HHHHHHhCCCCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCC-CCCCC
Confidence 356667776666 89999999999999999987 6789999999 99999999998877766789999999987 43368
Q ss_pred CCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCCC
Q 048309 137 YDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPD 180 (288)
Q Consensus 137 fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 180 (288)
||+|++..+++|++++....+++++.+.|+|||++++.+...+.
T Consensus 234 ~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~ 277 (334)
T 2ip2_A 234 GDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIERTISA 277 (334)
T ss_dssp CSEEEEESCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEECCBCS
T ss_pred CCEEEEchhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCC
Confidence 99999999999997777779999999999999999998876544
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.69 E-value=1.4e-16 Score=143.18 Aligned_cols=118 Identities=20% Similarity=0.239 Sum_probs=102.1
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCC
Q 048309 57 KHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKK 136 (288)
Q Consensus 57 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~ 136 (288)
....+++.+...++.+|||||||+|.++..+++.+..+|+|+|+|+ +++.|+++++.+++.++++++.+|+.+++.+++
T Consensus 38 y~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~ 116 (348)
T 2y1w_A 38 YQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQ 116 (348)
T ss_dssp HHHHHHHTGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSC
T ss_pred HHHHHHhccccCCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcchhhCCCCCc
Confidence 3456667777778899999999999999999987446999999996 889999999999987799999999999875578
Q ss_pred CCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 137 YDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 137 fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
||+|++..+++|+..+.....+.++.++|||||.+++..
T Consensus 117 ~D~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 155 (348)
T 2y1w_A 117 VDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPTI 155 (348)
T ss_dssp EEEEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEESCE
T ss_pred eeEEEEeCchhcCChHHHHHHHHHHHhhcCCCeEEEEec
Confidence 999999999888866677788889999999999998643
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=3.9e-16 Score=140.73 Aligned_cols=117 Identities=19% Similarity=0.250 Sum_probs=102.8
Q ss_pred HHHHHHcCCCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCC
Q 048309 59 SLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKY 137 (288)
Q Consensus 59 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~f 137 (288)
..+++.+...++.+|||||||+|..+..+++. +..+++++|+ +.+++.+++++...++.++++++.+|+.+..+ ..|
T Consensus 173 ~~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~ 250 (360)
T 1tw3_A 173 DAPAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEPLP-RKA 250 (360)
T ss_dssp HHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSCCS-SCE
T ss_pred HHHHHhCCCccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCCCC-CCc
Confidence 45667777778899999999999999999987 6789999999 99999999999998887789999999976223 359
Q ss_pred CEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 138 DRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 138 D~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
|+|++..+++|++.++...+++++.++|+|||++++.+..
T Consensus 251 D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~ 290 (360)
T 1tw3_A 251 DAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERD 290 (360)
T ss_dssp EEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred cEEEEcccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEe
Confidence 9999999999997666789999999999999999998776
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.7e-16 Score=140.42 Aligned_cols=110 Identities=11% Similarity=0.090 Sum_probs=93.1
Q ss_pred CCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcC------CCCceEEEEcccCCCC-------CC
Q 048309 68 SKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAG------LQDHIRLYLCDYRQLP-------KA 134 (288)
Q Consensus 68 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g------~~~~v~~~~~d~~~~~-------~~ 134 (288)
.++.+|||+|||+|.++..+++....+++|+|+|+.+++.|+++....+ ...+++++++|+.+.+ .+
T Consensus 33 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 112 (313)
T 3bgv_A 33 KRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQ 112 (313)
T ss_dssp --CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTT
T ss_pred CCCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCC
Confidence 3678999999999999999987656799999999999999999887542 1247999999998864 24
Q ss_pred CCCCEEEEccchhhh--CHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 135 KKYDRIISCEMMEAV--GHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 135 ~~fD~I~~~~~l~~~--~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
++||+|++..+++|+ +.++...+++++.++|+|||.+++.++.
T Consensus 113 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~ 157 (313)
T 3bgv_A 113 MCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPN 157 (313)
T ss_dssp CCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred CCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCC
Confidence 589999999999987 4567889999999999999999998764
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.69 E-value=4.4e-17 Score=143.72 Aligned_cols=109 Identities=11% Similarity=0.009 Sum_probs=87.5
Q ss_pred CCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCC-----ceEEEEccc------CCC--C-CC
Q 048309 69 KEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQD-----HIRLYLCDY------RQL--P-KA 134 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~-----~v~~~~~d~------~~~--~-~~ 134 (288)
++.+|||||||+|..+..++...+.+|+|+|+|+.|++.|+++....+... ++++.+.|+ .++ + ++
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~~ 127 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFYF 127 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCCS
T ss_pred CCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccccC
Confidence 578999999999987766665545799999999999999999987765311 267888888 322 1 45
Q ss_pred CCCCEEEEccchhhh-CHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 135 KKYDRIISCEMMEAV-GHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 135 ~~fD~I~~~~~l~~~-~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
++||+|+|.++++++ ..++...+++++.++|||||++++.+..
T Consensus 128 ~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~ 171 (302)
T 2vdw_A 128 GKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMD 171 (302)
T ss_dssp SCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 799999999999875 3346689999999999999999998764
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.69 E-value=4.7e-16 Score=131.92 Aligned_cols=151 Identities=17% Similarity=0.192 Sum_probs=110.0
Q ss_pred hhhhHHHHHhhhhhcCChHHHHHhhhhhcCCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc-cC
Q 048309 14 KVNQKSYFLRHISRKNSLAQAHRNISYHYDLDEDEDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-TG 92 (288)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~Yd~~~~~~l~~a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~ 92 (288)
.+..++..+ ....+.........+..+... .+.....+.+..++.. .++.+|||||||+|..+..+++. ++
T Consensus 24 ~l~~yl~~~--~~~~~~~l~~l~~~~~~~~~~---~~~~~~~~~l~~~~~~---~~~~~vLDiG~G~G~~~~~la~~~~~ 95 (232)
T 3ntv_A 24 LNKKYLIDL--HQHQNSSIEVLREFAEVNEVP---IVDRLTLDLIKQLIRM---NNVKNILEIGTAIGYSSMQFASISDD 95 (232)
T ss_dssp HHHHHHHHH--HGGGCCGGGGHHHHHHHTTCC---CCCHHHHHHHHHHHHH---HTCCEEEEECCSSSHHHHHHHTTCTT
T ss_pred HHHHHHHHh--CCCCCHHHHHHHHHHHHcCCC---CcCHHHHHHHHHHHhh---cCCCEEEEEeCchhHHHHHHHHhCCC
Confidence 345544443 333444444444444444332 1223344444444443 36789999999999999999985 57
Q ss_pred CEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCC---CCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCc
Q 048309 93 CNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPK---AKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDG 169 (288)
Q Consensus 93 ~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~---~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG 169 (288)
.+|+++|+++.+++.|+++++..++.++++++++|+.+..+ +++||+|++.... .....+++++.++|+|||
T Consensus 96 ~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~~~~-----~~~~~~l~~~~~~LkpgG 170 (232)
T 3ntv_A 96 IHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFIDAAK-----AQSKKFFEIYTPLLKHQG 170 (232)
T ss_dssp CEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEEETTS-----SSHHHHHHHHGGGEEEEE
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEEcCcH-----HHHHHHHHHHHHhcCCCe
Confidence 89999999999999999999999987789999999987643 6899999987543 445789999999999999
Q ss_pred EEEEEeec
Q 048309 170 LLVLQFSS 177 (288)
Q Consensus 170 ~l~~~~~~ 177 (288)
++++.+..
T Consensus 171 ~lv~d~~~ 178 (232)
T 3ntv_A 171 LVITDNVL 178 (232)
T ss_dssp EEEEECTT
T ss_pred EEEEeeCC
Confidence 99985543
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.69 E-value=4.2e-17 Score=131.25 Aligned_cols=109 Identities=13% Similarity=0.178 Sum_probs=94.3
Q ss_pred HHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CCCCCC
Q 048309 60 LLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAKKYD 138 (288)
Q Consensus 60 ~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~~fD 138 (288)
.+++.+...++.+|||+|||+|.++..+++.. .+++|+|+++.+++.++++ . ++++++.+| .+ ++++||
T Consensus 8 ~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~-----~-~~v~~~~~d---~~~~~~~~D 77 (170)
T 3i9f_A 8 EYLPNIFEGKKGVIVDYGCGNGFYCKYLLEFA-TKLYCIDINVIALKEVKEK-----F-DSVITLSDP---KEIPDNSVD 77 (170)
T ss_dssp TTHHHHHSSCCEEEEEETCTTCTTHHHHHTTE-EEEEEECSCHHHHHHHHHH-----C-TTSEEESSG---GGSCTTCEE
T ss_pred HHHHhcCcCCCCeEEEECCCCCHHHHHHHhhc-CeEEEEeCCHHHHHHHHHh-----C-CCcEEEeCC---CCCCCCceE
Confidence 44555666788899999999999999999874 4999999999999999887 2 479999999 33 567999
Q ss_pred EEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCCC
Q 048309 139 RIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPD 180 (288)
Q Consensus 139 ~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 180 (288)
+|++..+++|+ .++..+++++.++|+|||++++.++....
T Consensus 78 ~v~~~~~l~~~--~~~~~~l~~~~~~L~pgG~l~~~~~~~~~ 117 (170)
T 3i9f_A 78 FILFANSFHDM--DDKQHVISEVKRILKDDGRVIIIDWRKEN 117 (170)
T ss_dssp EEEEESCSTTC--SCHHHHHHHHHHHEEEEEEEEEEEECSSC
T ss_pred EEEEccchhcc--cCHHHHHHHHHHhcCCCCEEEEEEcCccc
Confidence 99999999999 67899999999999999999998876543
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.69 E-value=6.4e-16 Score=134.43 Aligned_cols=124 Identities=9% Similarity=0.104 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHHHcC-CCCCCEEEEECCcc---cHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEc
Q 048309 52 VAQMRKHSLLIEKAR-VSKEHEVLEIGCGW---GTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLC 126 (288)
Q Consensus 52 ~a~~~~~~~l~~~~~-~~~~~~vLDiGcG~---G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~ 126 (288)
..++..+..+++.+. ..+..+|||||||+ |.++..+.+. ++.+|+++|+|+.|++.|++++... .+++++++
T Consensus 59 ~~~~~~~~~~~~~l~~~~~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~---~~v~~~~~ 135 (274)
T 2qe6_A 59 IENRKVLVRGVRFLAGEAGISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKD---PNTAVFTA 135 (274)
T ss_dssp HHHHHHHHHHHHHHHTTTCCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTC---TTEEEEEC
T ss_pred HHHhHHHHHHHHHHhhccCCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCC---CCeEEEEe
Confidence 455566666666664 33457999999999 9887766655 6789999999999999999988532 47999999
Q ss_pred ccCCCC------------CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecC
Q 048309 127 DYRQLP------------KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSST 178 (288)
Q Consensus 127 d~~~~~------------~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 178 (288)
|+.+.. +..+||+|++..+++|++.++...+++++.++|+|||.|++.+...
T Consensus 136 D~~~~~~~~~~~~~~~~~d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~ 199 (274)
T 2qe6_A 136 DVRDPEYILNHPDVRRMIDFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVD 199 (274)
T ss_dssp CTTCHHHHHHSHHHHHHCCTTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBC
T ss_pred eCCCchhhhccchhhccCCCCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecC
Confidence 997631 1248999999999999976668999999999999999999988765
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.68 E-value=6.3e-17 Score=131.39 Aligned_cols=114 Identities=10% Similarity=0.163 Sum_probs=94.5
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCC
Q 048309 56 RKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKA 134 (288)
Q Consensus 56 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~ 134 (288)
.....+...+ .++.+|||+|||+|.++..++.. ++.+|+++|+|+.|++.+++++...|+..++++ .|.....++
T Consensus 38 ~fY~~~~~~l--~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~~~~ 113 (200)
T 3fzg_A 38 DFYTYVFGNI--KHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESDVYK 113 (200)
T ss_dssp HHHHHHHHHS--CCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHHHTT
T ss_pred HHHHHHHhhc--CCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--ecccccCCC
Confidence 3445555555 35779999999999999999876 778999999999999999999999998655666 566544567
Q ss_pred CCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 135 KKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 135 ~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
++||+|++..++|++ ++.+..+.++.+.|+|||+++...
T Consensus 114 ~~~DvVLa~k~LHlL--~~~~~al~~v~~~L~pggvfISfp 152 (200)
T 3fzg_A 114 GTYDVVFLLKMLPVL--KQQDVNILDFLQLFHTQNFVISFP 152 (200)
T ss_dssp SEEEEEEEETCHHHH--HHTTCCHHHHHHTCEEEEEEEEEE
T ss_pred CCcChhhHhhHHHhh--hhhHHHHHHHHHHhCCCCEEEEeC
Confidence 889999999999999 677777779999999999888644
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.4e-17 Score=139.64 Aligned_cols=138 Identities=18% Similarity=0.210 Sum_probs=104.3
Q ss_pred hHHHHHhhhhhcCCC-CCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHH
Q 048309 31 LAQAHRNISYHYDLD-EDEDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAE 109 (288)
Q Consensus 31 ~~~~~~~~a~~Yd~~-~~~~l~~a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~ 109 (288)
....|+..+..|+.. ...............+++.+...++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~ 91 (227)
T 3e8s_A 13 LLDSWHQNAQAWIDAVRHGAIESRRQVTDQAILLAILGRQPERVLDLGCGEGWLLRALADR-GIEAVGVDGDRTLVDAAR 91 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCHHHHHTHHHHHHHHHHHTCCSEEEEETCTTCHHHHHHHTT-TCEEEEEESCHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHhcccccccccccccHHHHHHhhcCCCCEEEEeCCCCCHHHHHHHHC-CCEEEEEcCCHHHHHHHH
Confidence 345566555555532 011222222223345666665567789999999999999999987 789999999999999998
Q ss_pred HHHHHcCCCCceEEEEcccCCC---C--CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCC
Q 048309 110 MKVNEAGLQDHIRLYLCDYRQL---P--KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTP 179 (288)
Q Consensus 110 ~~~~~~g~~~~v~~~~~d~~~~---~--~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 179 (288)
++ .++.+..+|+.++ + ..++||+|++..+++ . .++..+++++.++|+|||++++.+....
T Consensus 92 ~~-------~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~~~l~-~--~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 156 (227)
T 3e8s_A 92 AA-------GAGEVHLASYAQLAEAKVPVGKDYDLICANFALL-H--QDIIELLSAMRTLLVPGGALVIQTLHPW 156 (227)
T ss_dssp HT-------CSSCEEECCHHHHHTTCSCCCCCEEEEEEESCCC-S--SCCHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred Hh-------cccccchhhHHhhcccccccCCCccEEEECchhh-h--hhHHHHHHHHHHHhCCCeEEEEEecCcc
Confidence 77 3578888888776 3 445699999999998 4 6788999999999999999999887643
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.68 E-value=7.2e-17 Score=134.89 Aligned_cols=151 Identities=18% Similarity=0.173 Sum_probs=112.7
Q ss_pred hhHHHHHhhhhhcCChHHHHHhhhhhcCCCCCCCHHH----HHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHcc
Q 048309 16 NQKSYFLRHISRKNSLAQAHRNISYHYDLDEDEDLKV----AQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQT 91 (288)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~a~~Yd~~~~~~l~~----a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~ 91 (288)
.++...++...+...+...+...+ |+.. ...+.. .+......+++.+...++.+|||+|||+|.++..+++..
T Consensus 23 ~~v~~a~~~~~r~~~~~~~~~~~~--y~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~ 99 (215)
T 2yxe_A 23 KRVIDALLKVPREEFLPEHLKEYA--YVDT-PLEIGYGQTISAIHMVGMMCELLDLKPGMKVLEIGTGCGYHAAVTAEIV 99 (215)
T ss_dssp HHHHHHHHHSCGGGGSCGGGGGGT--TSCS-CEEEETTEEECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHcCCchhhhhc--ccCC-CccCCCCcEeCcHHHHHHHHHhhCCCCCCEEEEECCCccHHHHHHHHHh
Confidence 345566665566555555544433 5432 111100 113345567777788889999999999999999999873
Q ss_pred C--CEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccC
Q 048309 92 G--CNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKD 168 (288)
Q Consensus 92 ~--~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~Lkpg 168 (288)
+ .+|+++|+++.+++.+++++...+++ +++++.+|+.... ..++||+|++..+++|++ +++.++|+||
T Consensus 100 ~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~--------~~~~~~L~pg 170 (215)
T 2yxe_A 100 GEDGLVVSIERIPELAEKAERTLRKLGYD-NVIVIVGDGTLGYEPLAPYDRIYTTAAGPKIP--------EPLIRQLKDG 170 (215)
T ss_dssp CTTSEEEEEESCHHHHHHHHHHHHHHTCT-TEEEEESCGGGCCGGGCCEEEEEESSBBSSCC--------HHHHHTEEEE
T ss_pred CCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CeEEEECCcccCCCCCCCeeEEEECCchHHHH--------HHHHHHcCCC
Confidence 2 79999999999999999999888874 6999999986543 367899999999999984 3778999999
Q ss_pred cEEEEEeecC
Q 048309 169 GLLVLQFSST 178 (288)
Q Consensus 169 G~l~~~~~~~ 178 (288)
|++++.....
T Consensus 171 G~lv~~~~~~ 180 (215)
T 2yxe_A 171 GKLLMPVGRY 180 (215)
T ss_dssp EEEEEEESSS
T ss_pred cEEEEEECCC
Confidence 9999977554
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.2e-16 Score=140.15 Aligned_cols=108 Identities=21% Similarity=0.278 Sum_probs=84.8
Q ss_pred CCCCEEEEECCcccHHHHHH----HHc-cCCEE--EEEcCCHHHHHHHHHHHHHc-CCCCceEE--EEcccCCCC-----
Q 048309 68 SKEHEVLEIGCGWGTFAIEV----VRQ-TGCNY--TGITLSAEQMKYAEMKVNEA-GLQDHIRL--YLCDYRQLP----- 132 (288)
Q Consensus 68 ~~~~~vLDiGcG~G~~~~~l----a~~-~~~~v--~giD~s~~~~~~a~~~~~~~-g~~~~v~~--~~~d~~~~~----- 132 (288)
.++.+|||||||+|.++..+ +.. ++..| +|+|+|++|++.|++++... ++ .++++ ..++.++++
T Consensus 51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~ 129 (292)
T 2aot_A 51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNL-ENVKFAWHKETSSEYQSRMLE 129 (292)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSC-TTEEEEEECSCHHHHHHHHHT
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCC-CcceEEEEecchhhhhhhhcc
Confidence 56779999999999876543 332 35544 99999999999999998764 44 35554 455555432
Q ss_pred --CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecC
Q 048309 133 --KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSST 178 (288)
Q Consensus 133 --~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 178 (288)
.+++||+|++..+++|+ +++..++++++++|||||.+++.....
T Consensus 130 ~~~~~~fD~V~~~~~l~~~--~d~~~~l~~~~r~LkpgG~l~i~~~~~ 175 (292)
T 2aot_A 130 KKELQKWDFIHMIQMLYYV--KDIPATLKFFHSLLGTNAKMLIIVVSG 175 (292)
T ss_dssp TTCCCCEEEEEEESCGGGC--SCHHHHHHHHHHTEEEEEEEEEEEECT
T ss_pred ccCCCceeEEEEeeeeeec--CCHHHHHHHHHHHcCCCcEEEEEEecC
Confidence 35789999999999999 788999999999999999999986543
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.68 E-value=3.3e-16 Score=133.42 Aligned_cols=100 Identities=14% Similarity=0.219 Sum_probs=88.3
Q ss_pred CCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-C---CCCCCEEEE
Q 048309 68 SKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-K---AKKYDRIIS 142 (288)
Q Consensus 68 ~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~---~~~fD~I~~ 142 (288)
.++.+|||||||+|..+..++.. ++.+|+|+|+|+.+++.++++++..+++ +++++++|+.+++ . .++||+|++
T Consensus 69 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~fD~V~~ 147 (240)
T 1xdz_A 69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLE-NTTFCHDRAETFGQRKDVRESYDIVTA 147 (240)
T ss_dssp GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCS-SEEEEESCHHHHTTCTTTTTCEEEEEE
T ss_pred CCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEeccHHHhcccccccCCccEEEE
Confidence 46789999999999999999865 6789999999999999999999998884 6999999998865 2 578999999
Q ss_pred ccchhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 143 CEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 143 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
..+ .++..+++.+.++|+|||.+++.
T Consensus 148 ~~~------~~~~~~l~~~~~~LkpgG~l~~~ 173 (240)
T 1xdz_A 148 RAV------ARLSVLSELCLPLVKKNGLFVAL 173 (240)
T ss_dssp ECC------SCHHHHHHHHGGGEEEEEEEEEE
T ss_pred ecc------CCHHHHHHHHHHhcCCCCEEEEE
Confidence 762 45789999999999999999885
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=2.5e-16 Score=131.00 Aligned_cols=109 Identities=17% Similarity=0.269 Sum_probs=93.7
Q ss_pred CCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CCCCCCEEEEccch
Q 048309 68 SKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAKKYDRIISCEMM 146 (288)
Q Consensus 68 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~~fD~I~~~~~l 146 (288)
.++.+|||+|||+|.++..+++....+|+|+|+|+.+++.++++... . .+++++++|+.+++ ++++||+|++..++
T Consensus 41 ~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~--~-~~i~~~~~d~~~~~~~~~~fD~v~~~~~~ 117 (215)
T 2pxx_A 41 RPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAH--V-PQLRWETMDVRKLDFPSASFDVVLEKGTL 117 (215)
T ss_dssp CTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTT--C-TTCEEEECCTTSCCSCSSCEEEEEEESHH
T ss_pred CCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhccc--C-CCcEEEEcchhcCCCCCCcccEEEECcch
Confidence 57789999999999999999987323899999999999999988754 2 47999999999887 66899999999999
Q ss_pred hhhC-------------HhhHHHHHHHHhcccccCcEEEEEeecCC
Q 048309 147 EAVG-------------HEYMEEYFGCCESLLAKDGLLVLQFSSTP 179 (288)
Q Consensus 147 ~~~~-------------~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 179 (288)
+++. ..+...+++++.++|+|||.+++.++..+
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~ 163 (215)
T 2pxx_A 118 DALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAAP 163 (215)
T ss_dssp HHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCH
T ss_pred hhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCCc
Confidence 8774 35778999999999999999999776543
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.67 E-value=6e-16 Score=126.50 Aligned_cols=109 Identities=23% Similarity=0.377 Sum_probs=94.2
Q ss_pred HHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CCCCCCE
Q 048309 61 LIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAKKYDR 139 (288)
Q Consensus 61 l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~~fD~ 139 (288)
++..+ +.++.+|||+|||+|.++..+++. +.+++|+|+++.+++.++++. .+++++++|+.+++ ++++||+
T Consensus 39 ~l~~~-~~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~~D~~~~~~~~a~~~~------~~~~~~~~d~~~~~~~~~~~D~ 110 (195)
T 3cgg_A 39 LIDAM-APRGAKILDAGCGQGRIGGYLSKQ-GHDVLGTDLDPILIDYAKQDF------PEARWVVGDLSVDQISETDFDL 110 (195)
T ss_dssp HHHHH-SCTTCEEEEETCTTTHHHHHHHHT-TCEEEEEESCHHHHHHHHHHC------TTSEEEECCTTTSCCCCCCEEE
T ss_pred HHHHh-ccCCCeEEEECCCCCHHHHHHHHC-CCcEEEEcCCHHHHHHHHHhC------CCCcEEEcccccCCCCCCceeE
Confidence 44444 457889999999999999999987 789999999999999998875 35899999999877 5689999
Q ss_pred EEEc-cchhhhCHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 140 IISC-EMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 140 I~~~-~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
|++. .+++|++.++...+++++.++|+|||.+++....
T Consensus 111 i~~~~~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~~ 149 (195)
T 3cgg_A 111 IVSAGNVMGFLAEDGREPALANIHRALGADGRAVIGFGA 149 (195)
T ss_dssp EEECCCCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEET
T ss_pred EEECCcHHhhcChHHHHHHHHHHHHHhCCCCEEEEEeCC
Confidence 9998 7889987778899999999999999999996543
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.67 E-value=4.3e-16 Score=140.01 Aligned_cols=117 Identities=15% Similarity=0.275 Sum_probs=96.2
Q ss_pred HHHHHHcCCCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCC
Q 048309 59 SLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKY 137 (288)
Q Consensus 59 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~f 137 (288)
..+++.+...++.+|||||||+|..+..+++. ++.+++++|+ +.++. +++.+..++.++++++.+|+.+ +.+ +|
T Consensus 174 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~--~~~~~~~~~~~~v~~~~~d~~~-~~p-~~ 248 (348)
T 3lst_A 174 LILARAGDFPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDR-AEVVA--RHRLDAPDVAGRWKVVEGDFLR-EVP-HA 248 (348)
T ss_dssp HHHHHHSCCCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEEC-HHHHT--TCCCCCGGGTTSEEEEECCTTT-CCC-CC
T ss_pred HHHHHhCCccCCceEEEECCccCHHHHHHHHHCCCCEEEEecC-HHHhh--cccccccCCCCCeEEEecCCCC-CCC-CC
Confidence 46777778888899999999999999999987 6778999999 55554 3333344555689999999973 322 99
Q ss_pred CEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCCC
Q 048309 138 DRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPD 180 (288)
Q Consensus 138 D~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 180 (288)
|+|++..++||+++++...++++++++|||||++++.+...+.
T Consensus 249 D~v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~~~~~ 291 (348)
T 3lst_A 249 DVHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDAVVPE 291 (348)
T ss_dssp SEEEEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEECCBCS
T ss_pred cEEEEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCC
Confidence 9999999999997766789999999999999999998876554
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.67 E-value=5.4e-16 Score=128.64 Aligned_cols=104 Identities=22% Similarity=0.247 Sum_probs=91.2
Q ss_pred CCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCEEEEccch
Q 048309 67 VSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMM 146 (288)
Q Consensus 67 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~~~~~l 146 (288)
..++.+|||+|||+|.++..+++.+..+|+|+|+|+.+++.|+++++..++. +++++++|+.+.. +++||+|++...+
T Consensus 58 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~-~~~fD~i~~~~~~ 135 (205)
T 3grz_A 58 MVKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIY-DIALQKTSLLADV-DGKFDLIVANILA 135 (205)
T ss_dssp CSSCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCC-CCEEEESSTTTTC-CSCEEEEEEESCH
T ss_pred ccCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC-ceEEEeccccccC-CCCceEEEECCcH
Confidence 3578899999999999999998864459999999999999999999998885 4999999998764 4799999999888
Q ss_pred hhhCHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 147 EAVGHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 147 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
+++ ..+++++.++|+|||.+++.++.
T Consensus 136 ~~~-----~~~l~~~~~~L~~gG~l~~~~~~ 161 (205)
T 3grz_A 136 EIL-----LDLIPQLDSHLNEDGQVIFSGID 161 (205)
T ss_dssp HHH-----HHHGGGSGGGEEEEEEEEEEEEE
T ss_pred HHH-----HHHHHHHHHhcCCCCEEEEEecC
Confidence 765 78899999999999999996543
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.67 E-value=6.8e-16 Score=149.12 Aligned_cols=120 Identities=16% Similarity=0.237 Sum_probs=100.4
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHcc--CCEEEEEcCCHHHHHHHHHHHHHc------CCCCceEEEEcc
Q 048309 56 RKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQT--GCNYTGITLSAEQMKYAEMKVNEA------GLQDHIRLYLCD 127 (288)
Q Consensus 56 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~giD~s~~~~~~a~~~~~~~------g~~~~v~~~~~d 127 (288)
..+..+++.+...++.+|||||||+|.++..+++.. ..+|+|+|+|+.+++.|++++... ++ .+++++++|
T Consensus 708 qRle~LLelL~~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl-~nVefiqGD 786 (950)
T 3htx_A 708 QRVEYALKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNV-KSATLYDGS 786 (950)
T ss_dssp HHHHHHHHHHHHSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSC-SEEEEEESC
T ss_pred HHHHHHHHHhcccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCC-CceEEEECc
Confidence 444555555555578899999999999999999873 279999999999999999876532 44 489999999
Q ss_pred cCCCC-CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 128 YRQLP-KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 128 ~~~~~-~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
+.+++ ..++||+|++..+++|+++.....+++++.++|||| .+++.+..
T Consensus 787 a~dLp~~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN 836 (950)
T 3htx_A 787 ILEFDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPN 836 (950)
T ss_dssp TTSCCTTSCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECB
T ss_pred hHhCCcccCCeeEEEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEecC
Confidence 99988 668999999999999997767778999999999999 77776544
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.67 E-value=2e-16 Score=131.32 Aligned_cols=108 Identities=10% Similarity=0.128 Sum_probs=90.8
Q ss_pred CCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCC-CceEEEEcccCCCC---CCCC-CCEEEEc
Q 048309 69 KEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQ-DHIRLYLCDYRQLP---KAKK-YDRIISC 143 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~-~~v~~~~~d~~~~~---~~~~-fD~I~~~ 143 (288)
++.+|||+|||+|.++..++.....+|+|+|+|+.+++.|+++++..++. ++++++++|+.++. .+++ ||+|++.
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~ 132 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLD 132 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEEC
T ss_pred CCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEEC
Confidence 57899999999999999877764459999999999999999999998874 58999999998754 2578 9999998
Q ss_pred cchhhhCHhhHHHHHHHH--hcccccCcEEEEEeecCC
Q 048309 144 EMMEAVGHEYMEEYFGCC--ESLLAKDGLLVLQFSSTP 179 (288)
Q Consensus 144 ~~l~~~~~~~~~~~l~~~--~~~LkpgG~l~~~~~~~~ 179 (288)
..++ . .....+++.+ .++|+|||.+++.+....
T Consensus 133 ~~~~-~--~~~~~~l~~~~~~~~LkpgG~l~i~~~~~~ 167 (201)
T 2ift_A 133 PPFH-F--NLAEQAISLLCENNWLKPNALIYVETEKDK 167 (201)
T ss_dssp CCSS-S--CHHHHHHHHHHHTTCEEEEEEEEEEEESSS
T ss_pred CCCC-C--ccHHHHHHHHHhcCccCCCcEEEEEECCCC
Confidence 8754 3 5677888888 778999999999776543
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=8.6e-16 Score=129.12 Aligned_cols=118 Identities=18% Similarity=0.153 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc-c-CCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccC
Q 048309 52 VAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-T-GCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYR 129 (288)
Q Consensus 52 ~a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~-~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~ 129 (288)
....+.+..++.. .++.+|||||||+|..+..+++. + +.+|+++|+++.+++.|+++++..++.++++++++|+.
T Consensus 44 ~~~~~~l~~l~~~---~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 120 (223)
T 3duw_A 44 PTQGKFLQLLVQI---QGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLAL 120 (223)
T ss_dssp HHHHHHHHHHHHH---HTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHH
T ss_pred HHHHHHHHHHHHh---hCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHH
Confidence 3444555555443 35789999999999999999987 3 68999999999999999999999999778999999997
Q ss_pred CCC-----C-CCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 130 QLP-----K-AKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 130 ~~~-----~-~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
+.. . .++||+|++.... .....+++++.++|+|||++++.+..
T Consensus 121 ~~~~~~~~~~~~~fD~v~~d~~~-----~~~~~~l~~~~~~L~pgG~lv~~~~~ 169 (223)
T 3duw_A 121 DSLQQIENEKYEPFDFIFIDADK-----QNNPAYFEWALKLSRPGTVIIGDNVV 169 (223)
T ss_dssp HHHHHHHHTTCCCCSEEEECSCG-----GGHHHHHHHHHHTCCTTCEEEEESCS
T ss_pred HHHHHHHhcCCCCcCEEEEcCCc-----HHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence 642 1 2679999987663 34578999999999999999986544
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.3e-16 Score=135.95 Aligned_cols=108 Identities=19% Similarity=0.099 Sum_probs=93.9
Q ss_pred CCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-C-----CCCCCEE
Q 048309 67 VSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-K-----AKKYDRI 140 (288)
Q Consensus 67 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~-----~~~fD~I 140 (288)
+.++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.++++... .+++++++|+.+++ . ...||+|
T Consensus 54 ~~~~~~vLD~GcG~G~~~~~la~~-~~~v~gvD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~~~~~~~~~~~~~d~v 128 (245)
T 3ggd_A 54 FNPELPLIDFACGNGTQTKFLSQF-FPRVIGLDVSKSALEIAAKENTA----ANISYRLLDGLVPEQAAQIHSEIGDANI 128 (245)
T ss_dssp SCTTSCEEEETCTTSHHHHHHHHH-SSCEEEEESCHHHHHHHHHHSCC----TTEEEEECCTTCHHHHHHHHHHHCSCEE
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHh-CCCEEEEECCHHHHHHHHHhCcc----cCceEEECcccccccccccccccCccEE
Confidence 457789999999999999999987 45999999999999999988621 47999999999865 1 1359999
Q ss_pred EEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCC
Q 048309 141 ISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTP 179 (288)
Q Consensus 141 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 179 (288)
++..+++|+++++...+++++.++|||||++++.++..+
T Consensus 129 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 167 (245)
T 3ggd_A 129 YMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGTG 167 (245)
T ss_dssp EEESSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEECTT
T ss_pred EEcchhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCCcc
Confidence 999999999777899999999999999999999887654
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.66 E-value=3.5e-16 Score=127.53 Aligned_cols=120 Identities=13% Similarity=0.100 Sum_probs=95.7
Q ss_pred HHHHHHHHcC-CCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC---
Q 048309 57 KHSLLIEKAR-VSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP--- 132 (288)
Q Consensus 57 ~~~~l~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~--- 132 (288)
....+++.+. ..++.+|||+|||+|.++..+++....+|+|+|+++.+++.|+++++..++.++++++++|+.+..
T Consensus 31 ~~~~~~~~l~~~~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 110 (187)
T 2fhp_A 31 VKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQF 110 (187)
T ss_dssp HHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHH
Confidence 3344555553 357789999999999999998886457999999999999999999998887668999999998743
Q ss_pred --CCCCCCEEEEccchhhhCHhhHHHHHHHH--hcccccCcEEEEEeecCC
Q 048309 133 --KAKKYDRIISCEMMEAVGHEYMEEYFGCC--ESLLAKDGLLVLQFSSTP 179 (288)
Q Consensus 133 --~~~~fD~I~~~~~l~~~~~~~~~~~l~~~--~~~LkpgG~l~~~~~~~~ 179 (288)
..++||+|++...++. ......++.+ .++|+|||.+++......
T Consensus 111 ~~~~~~fD~i~~~~~~~~---~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~ 158 (187)
T 2fhp_A 111 YEEKLQFDLVLLDPPYAK---QEIVSQLEKMLERQLLTNEAVIVCETDKTV 158 (187)
T ss_dssp HHTTCCEEEEEECCCGGG---CCHHHHHHHHHHTTCEEEEEEEEEEEETTC
T ss_pred HhcCCCCCEEEECCCCCc---hhHHHHHHHHHHhcccCCCCEEEEEeCCcc
Confidence 2689999999887542 3445666666 899999999999766543
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.66 E-value=7.5e-17 Score=146.48 Aligned_cols=116 Identities=16% Similarity=0.170 Sum_probs=97.8
Q ss_pred HHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCC
Q 048309 59 SLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYD 138 (288)
Q Consensus 59 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD 138 (288)
..+.+.....++.+|||||||+|.++..+++....+|+|+|+| .+++.|+++++.+++.++++++++|+.+++.+++||
T Consensus 53 ~~i~~~~~~~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D 131 (376)
T 3r0q_C 53 NAVFQNKHHFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDISLPEKVD 131 (376)
T ss_dssp HHHHTTTTTTTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCCCSSCEE
T ss_pred HHHHhccccCCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcCcCCcce
Confidence 4444555667889999999999999999998733499999999 999999999999999878999999999988448999
Q ss_pred EEEEccchhhhC-HhhHHHHHHHHhcccccCcEEEEEe
Q 048309 139 RIISCEMMEAVG-HEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 139 ~I~~~~~l~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
+|++..+.+++. ...+..+++.+.++|+|||.+++..
T Consensus 132 ~Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~~ 169 (376)
T 3r0q_C 132 VIISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPSH 169 (376)
T ss_dssp EEEECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEESSE
T ss_pred EEEEcChhhcccchHHHHHHHHHHHhhCCCCeEEEEec
Confidence 999976555542 2457889999999999999998744
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.1e-15 Score=128.96 Aligned_cols=109 Identities=18% Similarity=0.223 Sum_probs=90.4
Q ss_pred cCCCCCCEEEEECCc-ccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC--CCCCCCEEE
Q 048309 65 ARVSKEHEVLEIGCG-WGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP--KAKKYDRII 141 (288)
Q Consensus 65 ~~~~~~~~vLDiGcG-~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~--~~~~fD~I~ 141 (288)
..++++.+|||+||| +|.++..+++..+.+|+|+|+|+.+++.|+++++..++ +++++++|+..+. ++++||+|+
T Consensus 51 ~~~~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~~~~~fD~I~ 128 (230)
T 3evz_A 51 TFLRGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNS--NVRLVKSNGGIIKGVVEGTFDVIF 128 (230)
T ss_dssp TTCCSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTC--CCEEEECSSCSSTTTCCSCEEEEE
T ss_pred hhcCCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCC--CcEEEeCCchhhhhcccCceeEEE
Confidence 345688999999999 99999999886567999999999999999999999887 7999999976543 458999999
Q ss_pred EccchhhhCH-----------------hhHHHHHHHHhcccccCcEEEEEe
Q 048309 142 SCEMMEAVGH-----------------EYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 142 ~~~~l~~~~~-----------------~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
++..+.+.+. .....+++++.++|+|||.+++..
T Consensus 129 ~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 179 (230)
T 3evz_A 129 SAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYL 179 (230)
T ss_dssp ECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred ECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEe
Confidence 9877655421 224789999999999999999853
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.66 E-value=4.9e-16 Score=130.16 Aligned_cols=107 Identities=20% Similarity=0.254 Sum_probs=89.4
Q ss_pred CCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC---CCCCCCEEEEc
Q 048309 68 SKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP---KAKKYDRIISC 143 (288)
Q Consensus 68 ~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~---~~~~fD~I~~~ 143 (288)
.++.+|||||||+|.++..+++. ++.+|+|+|+|+.+++.|+++++..++ .+++++++|+.+++ ++++||.|++.
T Consensus 37 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~-~nv~~~~~d~~~l~~~~~~~~~d~v~~~ 115 (213)
T 2fca_A 37 NDNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEA-QNVKLLNIDADTLTDVFEPGEVKRVYLN 115 (213)
T ss_dssp SCCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCC-SSEEEECCCGGGHHHHCCTTSCCEEEEE
T ss_pred CCCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCC-CCEEEEeCCHHHHHhhcCcCCcCEEEEE
Confidence 35779999999999999999987 678999999999999999999999888 48999999998864 46789999987
Q ss_pred cchhhhCH------hhHHHHHHHHhcccccCcEEEEEe
Q 048309 144 EMMEAVGH------EYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 144 ~~l~~~~~------~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
+...+... -....+++++.++|+|||.+++.+
T Consensus 116 ~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~t 153 (213)
T 2fca_A 116 FSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT 153 (213)
T ss_dssp SCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred CCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEe
Confidence 65432210 013689999999999999999864
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=6.9e-16 Score=138.27 Aligned_cols=112 Identities=21% Similarity=0.278 Sum_probs=95.3
Q ss_pred HHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CCCCC
Q 048309 59 SLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAKKY 137 (288)
Q Consensus 59 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~~f 137 (288)
..+.+.+...++.+|||||||+|.++..+++....+|+|+|+|+ +++.|+++++.+++.++++++.+|+.+++ +.++|
T Consensus 54 ~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 132 (340)
T 2fyt_A 54 DFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKV 132 (340)
T ss_dssp HHHHHCGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCE
T ss_pred HHHHhhhhhcCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCCcE
Confidence 44555556678899999999999999999987435999999996 99999999999998779999999999987 55899
Q ss_pred CEEEEccc---hhhhCHhhHHHHHHHHhcccccCcEEEE
Q 048309 138 DRIISCEM---MEAVGHEYMEEYFGCCESLLAKDGLLVL 173 (288)
Q Consensus 138 D~I~~~~~---l~~~~~~~~~~~l~~~~~~LkpgG~l~~ 173 (288)
|+|++..+ +.+. ..+..++.++.++|||||.++.
T Consensus 133 D~Ivs~~~~~~l~~~--~~~~~~l~~~~~~LkpgG~lip 169 (340)
T 2fyt_A 133 DVIISEWMGYFLLFE--SMLDSVLYAKNKYLAKGGSVYP 169 (340)
T ss_dssp EEEEECCCBTTBTTT--CHHHHHHHHHHHHEEEEEEEES
T ss_pred EEEEEcCchhhccCH--HHHHHHHHHHHhhcCCCcEEEc
Confidence 99999763 4444 5778899999999999999983
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.66 E-value=6.9e-16 Score=128.06 Aligned_cols=100 Identities=15% Similarity=0.286 Sum_probs=88.4
Q ss_pred CCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCEEEEccchh
Q 048309 69 KEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMME 147 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~~~~~l~ 147 (288)
++.+|||+|||+|..+..++.. ++.+++|+|+|+.+++.+++++...+++ +++++++|+.+.++.++||+|++...
T Consensus 65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~D~i~~~~~-- 141 (207)
T 1jsx_A 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLE-NIEPVQSRVEEFPSEPPFDGVISRAF-- 141 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCS-SEEEEECCTTTSCCCSCEEEEECSCS--
T ss_pred CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CeEEEecchhhCCccCCcCEEEEecc--
Confidence 4789999999999999999987 6789999999999999999999998884 59999999998776679999998542
Q ss_pred hhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 148 AVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 148 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
.+...+++++.++|+|||.+++..
T Consensus 142 ----~~~~~~l~~~~~~L~~gG~l~~~~ 165 (207)
T 1jsx_A 142 ----ASLNDMVSWCHHLPGEQGRFYALK 165 (207)
T ss_dssp ----SSHHHHHHHHTTSEEEEEEEEEEE
T ss_pred ----CCHHHHHHHHHHhcCCCcEEEEEe
Confidence 345789999999999999999864
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.66 E-value=3.3e-16 Score=136.97 Aligned_cols=109 Identities=18% Similarity=0.158 Sum_probs=84.4
Q ss_pred CCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHc-----------------CCC------------
Q 048309 68 SKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEA-----------------GLQ------------ 118 (288)
Q Consensus 68 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~-----------------g~~------------ 118 (288)
.++.+|||||||+|..+..++...+.+|+|+|+|+.|++.|+++++.. +..
T Consensus 70 ~~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 149 (289)
T 2g72_A 70 VSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA 149 (289)
T ss_dssp SCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred CCCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHh
Confidence 367899999999999554444435679999999999999998865421 100
Q ss_pred CceEEEEcccCC-CC------CCCCCCEEEEccchhhhCH--hhHHHHHHHHhcccccCcEEEEEee
Q 048309 119 DHIRLYLCDYRQ-LP------KAKKYDRIISCEMMEAVGH--EYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 119 ~~v~~~~~d~~~-~~------~~~~fD~I~~~~~l~~~~~--~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
..++++.+|+.+ ++ ++++||+|++..+++|+.+ +++..+++++.++|||||+|++...
T Consensus 150 ~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~ 216 (289)
T 2g72_A 150 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGA 216 (289)
T ss_dssp HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred hhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 015678889987 43 2356999999999999532 5899999999999999999999753
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.66 E-value=7.7e-16 Score=143.80 Aligned_cols=152 Identities=21% Similarity=0.240 Sum_probs=115.0
Q ss_pred HHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCC
Q 048309 58 HSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKY 137 (288)
Q Consensus 58 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~f 137 (288)
...+++.+...++.+|||||||+|.++..+++.+..+|+|+|+|+ +++.|+++++.+++.++++++.+|+.+++.+++|
T Consensus 147 ~~~il~~l~~~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~~~f 225 (480)
T 3b3j_A 147 QRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQV 225 (480)
T ss_dssp HHHHHHTGGGTTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCE
T ss_pred HHHHHHhhhhcCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhCccCCCe
Confidence 345666666667889999999999999999886556999999998 9999999999999977999999999987745789
Q ss_pred CEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecC---CCc---ccccccCchhhHhhhccCCCCCCCHHHHH
Q 048309 138 DRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSST---PDA---RYNEYRLSSDFIKEYIFPGGCLPSLSRIT 210 (288)
Q Consensus 138 D~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~---~~~---~~~~~~~~~~~~~~~i~~~~~~p~~~~~~ 210 (288)
|+|++..+++|...+.....+.++.++|+|||.+++..... +.. .+.+......++....+++..++++..+.
T Consensus 226 D~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~~~~~~~~~pi~~~~l~~e~~~~~~~w~~~~~~g~dl~~l~~~~ 304 (480)
T 3b3j_A 226 DIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPTIGDVHLAPFTDEQLYMEQFTKANFWYQPSFHGVDLSALRGAA 304 (480)
T ss_dssp EEEECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEESCEEEEEEEEECCHHHHHHHHHHHHHHHSSCBTTBCCGGGHHHH
T ss_pred EEEEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEEEeceeeeeccCchHHHHHHhhccCccccccCCCcChhhhhhHH
Confidence 99999988888865667778889999999999998643221 100 00000001223333478888888776654
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.65 E-value=2.2e-15 Score=129.08 Aligned_cols=118 Identities=17% Similarity=0.133 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc-c-CCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccC
Q 048309 52 VAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-T-GCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYR 129 (288)
Q Consensus 52 ~a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~-~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~ 129 (288)
....+.+..++.. .++.+|||||||+|..+..+++. + +.+|+++|+++.+++.|+++++..++.++++++++|+.
T Consensus 49 ~~~~~~l~~l~~~---~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~ 125 (248)
T 3tfw_A 49 ANQGQFLALLVRL---TQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPAL 125 (248)
T ss_dssp HHHHHHHHHHHHH---HTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHH
T ss_pred HHHHHHHHHHHhh---cCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHH
Confidence 3444445544443 35789999999999999999987 3 68999999999999999999999999778999999997
Q ss_pred CC-C---CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 130 QL-P---KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 130 ~~-~---~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
+. + ..++||+|++.... .....+++++.++|||||++++.+..
T Consensus 126 ~~l~~~~~~~~fD~V~~d~~~-----~~~~~~l~~~~~~LkpGG~lv~~~~~ 172 (248)
T 3tfw_A 126 QSLESLGECPAFDLIFIDADK-----PNNPHYLRWALRYSRPGTLIIGDNVV 172 (248)
T ss_dssp HHHHTCCSCCCCSEEEECSCG-----GGHHHHHHHHHHTCCTTCEEEEECCS
T ss_pred HHHHhcCCCCCeEEEEECCch-----HHHHHHHHHHHHhcCCCeEEEEeCCC
Confidence 63 2 23589999987642 45678999999999999999986553
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.65 E-value=1.2e-15 Score=127.51 Aligned_cols=107 Identities=22% Similarity=0.346 Sum_probs=90.5
Q ss_pred CCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC---CCCCCCEEEEc
Q 048309 68 SKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP---KAKKYDRIISC 143 (288)
Q Consensus 68 ~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~---~~~~fD~I~~~ 143 (288)
.++.+|||||||+|.++..+++. ++.+++|+|+|+.+++.|++++...++ .+++++++|+.+++ ++++||+|++.
T Consensus 40 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~D~i~~~ 118 (214)
T 1yzh_A 40 NDNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGV-PNIKLLWVDGSDLTDYFEDGEIDRLYLN 118 (214)
T ss_dssp SCCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC-SSEEEEECCSSCGGGTSCTTCCSEEEEE
T ss_pred CCCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCC-CCEEEEeCCHHHHHhhcCCCCCCEEEEE
Confidence 35789999999999999999987 678999999999999999999998888 58999999999865 45789999998
Q ss_pred cchhhhCHh------hHHHHHHHHhcccccCcEEEEEe
Q 048309 144 EMMEAVGHE------YMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 144 ~~l~~~~~~------~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
....+.... ....+++++.++|+|||.+++.+
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 156 (214)
T 1yzh_A 119 FSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT 156 (214)
T ss_dssp SCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred CCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEe
Confidence 765432100 23679999999999999999854
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=3.9e-16 Score=133.94 Aligned_cols=101 Identities=15% Similarity=0.163 Sum_probs=88.7
Q ss_pred CCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCC----CCCCCEEEE
Q 048309 68 SKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPK----AKKYDRIIS 142 (288)
Q Consensus 68 ~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~----~~~fD~I~~ 142 (288)
.++.+|||||||+|..+..++.. ++.+|+++|+|+.+++.++++++..++. +++++++|+++++. .++||+|++
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~-~v~~~~~d~~~~~~~~~~~~~fD~I~s 157 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLK-GARALWGRAEVLAREAGHREAYARAVA 157 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCS-SEEEEECCHHHHTTSTTTTTCEEEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC-ceEEEECcHHHhhcccccCCCceEEEE
Confidence 46789999999999999999987 6789999999999999999999999984 69999999988762 379999999
Q ss_pred ccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 143 CEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 143 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
..+ .+...+++.+.++|||||++++..
T Consensus 158 ~a~------~~~~~ll~~~~~~LkpgG~l~~~~ 184 (249)
T 3g89_A 158 RAV------APLCVLSELLLPFLEVGGAAVAMK 184 (249)
T ss_dssp ESS------CCHHHHHHHHGGGEEEEEEEEEEE
T ss_pred CCc------CCHHHHHHHHHHHcCCCeEEEEEe
Confidence 643 345789999999999999998743
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=1.3e-15 Score=124.24 Aligned_cols=114 Identities=20% Similarity=0.292 Sum_probs=97.4
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCC-CCCCC
Q 048309 57 KHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQ-LPKAK 135 (288)
Q Consensus 57 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~-~~~~~ 135 (288)
....+++.+...++.+|||+|||+|.++..+++.. .+|+++|+++.+++.++++++..++..+++++++|+.+ ++..+
T Consensus 21 ~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 99 (192)
T 1l3i_A 21 VRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRV-RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIP 99 (192)
T ss_dssp HHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSC
T ss_pred HHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhc-CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhcccCC
Confidence 34456677778889999999999999999998864 89999999999999999999988886689999999877 22326
Q ss_pred CCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEee
Q 048309 136 KYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 136 ~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
+||+|++..+++++ ..+++++.++|+|||.+++...
T Consensus 100 ~~D~v~~~~~~~~~-----~~~l~~~~~~l~~gG~l~~~~~ 135 (192)
T 1l3i_A 100 DIDIAVVGGSGGEL-----QEILRIIKDKLKPGGRIIVTAI 135 (192)
T ss_dssp CEEEEEESCCTTCH-----HHHHHHHHHTEEEEEEEEEEEC
T ss_pred CCCEEEECCchHHH-----HHHHHHHHHhcCCCcEEEEEec
Confidence 89999999877654 7899999999999999998654
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.65 E-value=4e-16 Score=130.91 Aligned_cols=94 Identities=22% Similarity=0.305 Sum_probs=84.4
Q ss_pred CCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CCCCCCEEEEccchhh
Q 048309 70 EHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAKKYDRIISCEMMEA 148 (288)
Q Consensus 70 ~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~~fD~I~~~~~l~~ 148 (288)
+.+|||+|||+|.++..+++. +|+|+|+.+++.++++ +++++++|+.+++ ++++||+|++..+++|
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~~-----~~vD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 114 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKIK-----IGVEPSERMAEIARKR--------GVFVLKGTAENLPLKDESFDFALMVTTICF 114 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTCC-----EEEESCHHHHHHHHHT--------TCEEEECBTTBCCSCTTCEEEEEEESCGGG
T ss_pred CCcEEEeCCCCCHHHHHHHHH-----hccCCCHHHHHHHHhc--------CCEEEEcccccCCCCCCCeeEEEEcchHhh
Confidence 789999999999999888653 9999999999999876 4789999999887 5679999999999999
Q ss_pred hCHhhHHHHHHHHhcccccCcEEEEEeecC
Q 048309 149 VGHEYMEEYFGCCESLLAKDGLLVLQFSST 178 (288)
Q Consensus 149 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 178 (288)
+ .++..+++++.++|+|||.+++.+...
T Consensus 115 ~--~~~~~~l~~~~~~L~pgG~l~i~~~~~ 142 (219)
T 1vlm_A 115 V--DDPERALKEAYRILKKGGYLIVGIVDR 142 (219)
T ss_dssp S--SCHHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred c--cCHHHHHHHHHHHcCCCcEEEEEEeCC
Confidence 9 678899999999999999999987654
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.64 E-value=8.4e-16 Score=132.45 Aligned_cols=114 Identities=16% Similarity=0.234 Sum_probs=94.6
Q ss_pred HHHHcCCC-CCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC---CCCC
Q 048309 61 LIEKARVS-KEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP---KAKK 136 (288)
Q Consensus 61 l~~~~~~~-~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~---~~~~ 136 (288)
+...+... ++.+|||+|||+|.++..+++....+|+|+|+++.+++.|+++++..++.++++++++|+.++. ..++
T Consensus 40 l~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~ 119 (259)
T 3lpm_A 40 LAKFSYLPIRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKER 119 (259)
T ss_dssp HHHHCCCCSSCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTC
T ss_pred HHHHhcCCCCCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCC
Confidence 34445666 7899999999999999999987445999999999999999999999999778999999999876 3689
Q ss_pred CCEEEEccchhhh------------------CHhhHHHHHHHHhcccccCcEEEEE
Q 048309 137 YDRIISCEMMEAV------------------GHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 137 fD~I~~~~~l~~~------------------~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
||+|+++..+... .......+++.+.++|+|||++++.
T Consensus 120 fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 175 (259)
T 3lpm_A 120 ADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFV 175 (259)
T ss_dssp EEEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEE
Confidence 9999997654322 1134678999999999999999984
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=7.1e-17 Score=148.44 Aligned_cols=155 Identities=14% Similarity=0.155 Sum_probs=111.1
Q ss_pred CHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceE-EEEcc
Q 048309 49 DLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIR-LYLCD 127 (288)
Q Consensus 49 ~l~~a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~-~~~~d 127 (288)
.+.....+....+++.+.+.++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.|+++ +++.... +...+
T Consensus 87 ~~~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~-g~~v~gvD~s~~~~~~a~~~----~~~~~~~~~~~~~ 161 (416)
T 4e2x_A 87 VMREHFAMLARDFLATELTGPDPFIVEIGCNDGIMLRTIQEA-GVRHLGFEPSSGVAAKAREK----GIRVRTDFFEKAT 161 (416)
T ss_dssp HHHHHHHHHHHHHHHTTTCSSSCEEEEETCTTTTTHHHHHHT-TCEEEEECCCHHHHHHHHTT----TCCEECSCCSHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCEEEEecCCCCHHHHHHHHc-CCcEEEECCCHHHHHHHHHc----CCCcceeeechhh
Confidence 455666677788888888888999999999999999999986 77999999999999998865 3321111 22233
Q ss_pred cCCCC-CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCCCcccccccCchhhHhhhccCCCCCCCH
Q 048309 128 YRQLP-KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPDARYNEYRLSSDFIKEYIFPGGCLPSL 206 (288)
Q Consensus 128 ~~~~~-~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~ 206 (288)
...++ .+++||+|++..+++|+ .++..+++++.++|||||++++.+........ ... ......+.....+.
T Consensus 162 ~~~l~~~~~~fD~I~~~~vl~h~--~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~-----~~~-~~~~~~~~~~~~s~ 233 (416)
T 4e2x_A 162 ADDVRRTEGPANVIYAANTLCHI--PYVQSVLEGVDALLAPDGVFVFEDPYLGDIVA-----KTS-FDQIFDEHFFLFSA 233 (416)
T ss_dssp HHHHHHHHCCEEEEEEESCGGGC--TTHHHHHHHHHHHEEEEEEEEEEEECHHHHHH-----HTC-GGGCSTTCCEECCH
T ss_pred HhhcccCCCCEEEEEECChHHhc--CCHHHHHHHHHHHcCCCeEEEEEeCChHHhhh-----hcc-hhhhhhhhhhcCCH
Confidence 33444 45899999999999999 68999999999999999999997654221100 000 11111233445677
Q ss_pred HHHHHHHHHc
Q 048309 207 SRITSAMAAA 216 (288)
Q Consensus 207 ~~~~~~~~~~ 216 (288)
.++.+.++++
T Consensus 234 ~~l~~ll~~a 243 (416)
T 4e2x_A 234 TSVQGMAQRC 243 (416)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHc
Confidence 7777666554
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.2e-15 Score=138.40 Aligned_cols=118 Identities=11% Similarity=0.199 Sum_probs=97.9
Q ss_pred HHHHHHcCCCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCC--ceEEEEcccCCCCCCC
Q 048309 59 SLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQD--HIRLYLCDYRQLPKAK 135 (288)
Q Consensus 59 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~--~v~~~~~d~~~~~~~~ 135 (288)
..+++.+...++.+|||+|||+|.++..+++. ++.+|+|+|+|+.+++.++++++.+++.. +++++.+|+.+..+++
T Consensus 212 ~~ll~~l~~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~~~~ 291 (375)
T 4dcm_A 212 RFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPF 291 (375)
T ss_dssp HHHHHTCCCSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTCCTT
T ss_pred HHHHHhCcccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccCCCC
Confidence 34577777777789999999999999999988 57899999999999999999999888643 5888999998855668
Q ss_pred CCCEEEEccchhhh---CHhhHHHHHHHHhcccccCcEEEEEee
Q 048309 136 KYDRIISCEMMEAV---GHEYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 136 ~fD~I~~~~~l~~~---~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
+||+|+++..+++. +......+++++.++|+|||.+++...
T Consensus 292 ~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n 335 (375)
T 4dcm_A 292 RFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVAN 335 (375)
T ss_dssp CEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEE
Confidence 99999999988763 223455789999999999999999643
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=6.2e-16 Score=139.06 Aligned_cols=108 Identities=22% Similarity=0.271 Sum_probs=92.5
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CCCCCCEEEEcc
Q 048309 66 RVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAKKYDRIISCE 144 (288)
Q Consensus 66 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~~fD~I~~~~ 144 (288)
.+.++.+|||||||+|.++..+++.+..+|+|+|+| ++++.|+++++.+++.++++++++|+.+++ +.++||+|++..
T Consensus 63 ~~~~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s-~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~ 141 (349)
T 3q7e_A 63 HLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECS-SISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEW 141 (349)
T ss_dssp HHHTTCEEEEESCTTSHHHHHHHHTTCSEEEEEECS-THHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECC
T ss_pred ccCCCCEEEEEeccchHHHHHHHHCCCCEEEEECcH-HHHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEcc
Confidence 345788999999999999999998744599999999 599999999999999878999999999988 668999999976
Q ss_pred chhhh-CHhhHHHHHHHHhcccccCcEEEEE
Q 048309 145 MMEAV-GHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 145 ~l~~~-~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
+.+++ .......++..+.++|||||.++..
T Consensus 142 ~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 172 (349)
T 3q7e_A 142 MGYCLFYESMLNTVLHARDKWLAPDGLIFPD 172 (349)
T ss_dssp CBBTBTBTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred ccccccCchhHHHHHHHHHHhCCCCCEEccc
Confidence 54433 2267888999999999999998743
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=6.2e-15 Score=132.72 Aligned_cols=119 Identities=15% Similarity=0.145 Sum_probs=101.6
Q ss_pred HHHHHHcCCCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCC
Q 048309 59 SLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKY 137 (288)
Q Consensus 59 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~f 137 (288)
..+++.++..+..+|+|||||+|.++..++++ +..+++..|+ |++++.+++.++..+ .++++++.+|+.+.+. ..+
T Consensus 169 ~~~~~~~~~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~-~~rv~~~~gD~~~~~~-~~~ 245 (353)
T 4a6d_A 169 RSVLTAFDLSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQE-EEQIDFQEGDFFKDPL-PEA 245 (353)
T ss_dssp HHHHHSSCGGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC---CCSEEEEESCTTTSCC-CCC
T ss_pred HHHHHhcCcccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhcc-cCceeeecCccccCCC-CCc
Confidence 45666667777889999999999999999998 8889999997 889999998876555 4689999999987553 458
Q ss_pred CEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCCC
Q 048309 138 DRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPD 180 (288)
Q Consensus 138 D~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 180 (288)
|++++..++|++++++...+++++++.|+|||++++.+...++
T Consensus 246 D~~~~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~~~~~ 288 (353)
T 4a6d_A 246 DLYILARVLHDWADGKCSHLLERIYHTCKPGGGILVIESLLDE 288 (353)
T ss_dssp SEEEEESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEECCCCT
T ss_pred eEEEeeeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEeeeCC
Confidence 9999999999998888889999999999999999998877654
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=2.4e-15 Score=128.82 Aligned_cols=154 Identities=12% Similarity=0.091 Sum_probs=112.1
Q ss_pred hhhHHHHHhhhhhcCChHHHHHhhhhhcCCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc-c-C
Q 048309 15 VNQKSYFLRHISRKNSLAQAHRNISYHYDLDEDEDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-T-G 92 (288)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~a~~Yd~~~~~~l~~a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~-~ 92 (288)
+++++.-+....+.+.+-......+...... ...+...+.+.+..++.. .++.+|||||||+|..+..+++. + +
T Consensus 29 ~~~y~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~ll~~l~~~---~~~~~VLeiG~G~G~~~~~la~~~~~~ 104 (247)
T 1sui_A 29 LYQYILETSVFPREHEAMKELREVTAKHPWN-IMTTSADEGQFLSMLLKL---INAKNTMEIGVYTGYSLLATALAIPED 104 (247)
T ss_dssp HHHHHHHHHTSSSCTTHHHHHHHHHHTSTTG-GGSCCHHHHHHHHHHHHH---TTCCEEEEECCGGGHHHHHHHHHSCTT
T ss_pred HHHHHHHcccCCCCCHHHHHHHHHHHhcCCC-CCCcCHHHHHHHHHHHHh---hCcCEEEEeCCCcCHHHHHHHHhCCCC
Confidence 4444433322335666655555554433221 112234555556655554 35679999999999999999987 3 6
Q ss_pred CEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCC-C-C------CCCCCEEEEccchhhhCHhhHHHHHHHHhcc
Q 048309 93 CNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQL-P-K------AKKYDRIISCEMMEAVGHEYMEEYFGCCESL 164 (288)
Q Consensus 93 ~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~-~-~------~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~ 164 (288)
.+|+++|+++.+++.|+++++..|+.++++++++|+.+. + . .++||+|++.... .+...+++++.++
T Consensus 105 ~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~V~~d~~~-----~~~~~~l~~~~~~ 179 (247)
T 1sui_A 105 GKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYDFIFVDADK-----DNYLNYHKRLIDL 179 (247)
T ss_dssp CEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCBSEEEECSCS-----TTHHHHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCEEEEEEcCch-----HHHHHHHHHHHHh
Confidence 899999999999999999999999877899999999764 2 1 5789999987542 4568899999999
Q ss_pred cccCcEEEEEeec
Q 048309 165 LAKDGLLVLQFSS 177 (288)
Q Consensus 165 LkpgG~l~~~~~~ 177 (288)
|+|||++++.+..
T Consensus 180 LkpGG~lv~d~~~ 192 (247)
T 1sui_A 180 VKVGGVIGYDNTL 192 (247)
T ss_dssp BCTTCCEEEECTT
T ss_pred CCCCeEEEEecCC
Confidence 9999999986543
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.63 E-value=3.2e-15 Score=126.58 Aligned_cols=117 Identities=20% Similarity=0.262 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCC
Q 048309 53 AQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQL 131 (288)
Q Consensus 53 a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~ 131 (288)
.....+..++. ..++.+|||+|||+|..+..+++. ++.+|+++|+++.+++.|+++++..++..+++++.+|+.+.
T Consensus 41 ~~~~~l~~~~~---~~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 117 (233)
T 2gpy_A 41 LGMESLLHLLK---MAAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQL 117 (233)
T ss_dssp HHHHHHHHHHH---HHCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGS
T ss_pred HHHHHHHHHHh---ccCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHH
Confidence 33344444443 346789999999999999999987 56899999999999999999999998876899999999885
Q ss_pred -C-C--CCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 132 -P-K--AKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 132 -~-~--~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
+ . +++||+|++....+ +...+++.+.++|+|||++++.++.
T Consensus 118 ~~~~~~~~~fD~I~~~~~~~-----~~~~~l~~~~~~L~pgG~lv~~~~~ 162 (233)
T 2gpy_A 118 GEKLELYPLFDVLFIDAAKG-----QYRRFFDMYSPMVRPGGLILSDNVL 162 (233)
T ss_dssp HHHHTTSCCEEEEEEEGGGS-----CHHHHHHHHGGGEEEEEEEEEETTT
T ss_pred HHhcccCCCccEEEECCCHH-----HHHHHHHHHHHHcCCCeEEEEEcCC
Confidence 3 2 57899999976643 5588999999999999999996543
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.63 E-value=4.1e-15 Score=136.45 Aligned_cols=119 Identities=10% Similarity=0.092 Sum_probs=97.1
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHH-------HHHHHHcCCC-CceEEEEc
Q 048309 56 RKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYA-------EMKVNEAGLQ-DHIRLYLC 126 (288)
Q Consensus 56 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a-------~~~~~~~g~~-~~v~~~~~ 126 (288)
..+..+++.+.+.++.+|||||||+|.++..+++. +..+|+|+|+++.+++.| +++++..|+. .+++++++
T Consensus 229 ~~v~~ml~~l~l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~g 308 (433)
T 1u2z_A 229 NFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLK 308 (433)
T ss_dssp HHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEES
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEc
Confidence 45667788888889999999999999999999987 345899999999999998 8888888853 68999998
Q ss_pred ccCCC----C-CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 127 DYRQL----P-KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 127 d~~~~----~-~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
|.... + ..++||+|+++.++ +. ++....++++.+.|||||++++.+..
T Consensus 309 D~~~~~~~~~~~~~~FDvIvvn~~l-~~--~d~~~~L~el~r~LKpGG~lVi~d~f 361 (433)
T 1u2z_A 309 KSFVDNNRVAELIPQCDVILVNNFL-FD--EDLNKKVEKILQTAKVGCKIISLKSL 361 (433)
T ss_dssp SCSTTCHHHHHHGGGCSEEEECCTT-CC--HHHHHHHHHHHTTCCTTCEEEESSCS
T ss_pred CccccccccccccCCCCEEEEeCcc-cc--ccHHHHHHHHHHhCCCCeEEEEeecc
Confidence 65432 1 24689999987666 33 57788899999999999999986533
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.63 E-value=1.5e-15 Score=127.68 Aligned_cols=118 Identities=21% Similarity=0.200 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc-c-CCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccC
Q 048309 52 VAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-T-GCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYR 129 (288)
Q Consensus 52 ~a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~-~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~ 129 (288)
....+.+..++.. .++.+|||||||+|..+..+++. + +.+|+++|+++.+++.++++++..++.++++++++|+.
T Consensus 50 ~~~~~~l~~l~~~---~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 126 (225)
T 3tr6_A 50 PEQAQLLALLVKL---MQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAK 126 (225)
T ss_dssp HHHHHHHHHHHHH---HTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHH
T ss_pred HHHHHHHHHHHHh---hCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHH
Confidence 3444555555544 35679999999999999999987 3 68999999999999999999999999777999999996
Q ss_pred CCC--CC-----CCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 130 QLP--KA-----KKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 130 ~~~--~~-----~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
+.. .. ++||+|++.... .....+++++.++|+|||++++.+..
T Consensus 127 ~~~~~~~~~~~~~~fD~v~~~~~~-----~~~~~~l~~~~~~L~pgG~lv~~~~~ 176 (225)
T 3tr6_A 127 DTLAELIHAGQAWQYDLIYIDADK-----ANTDLYYEESLKLLREGGLIAVDNVL 176 (225)
T ss_dssp HHHHHHHTTTCTTCEEEEEECSCG-----GGHHHHHHHHHHHEEEEEEEEEECSS
T ss_pred HHHHHhhhccCCCCccEEEECCCH-----HHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence 642 11 789999976542 45688999999999999999987654
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=3.2e-15 Score=135.77 Aligned_cols=121 Identities=16% Similarity=0.284 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHcC--CCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCC
Q 048309 53 AQMRKHSLLIEKAR--VSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQ 130 (288)
Q Consensus 53 a~~~~~~~l~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~ 130 (288)
.....+..+.+.+. ..++.+|||+|||+|.++..+++. +.+|+++|+|+.+++.|+++++.+++ +++++++|+.+
T Consensus 215 ~t~~ll~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~la~~-g~~V~gvDis~~al~~A~~n~~~~~~--~v~~~~~D~~~ 291 (381)
T 3dmg_A 215 ASLLLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARM-GAEVVGVEDDLASVLSLQKGLEANAL--KAQALHSDVDE 291 (381)
T ss_dssp HHHHHHHHHHHHHCTTTTTTCEEEEETCTTSTTHHHHHHT-TCEEEEEESBHHHHHHHHHHHHHTTC--CCEEEECSTTT
T ss_pred HHHHHHHHHHHhhcccCCCCCEEEEEeeeCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHcCC--CeEEEEcchhh
Confidence 33444555555542 346789999999999999999997 77999999999999999999999887 48999999999
Q ss_pred CC-CCCCCCEEEEccchhh---hCHhhHHHHHHHHhcccccCcEEEEEee
Q 048309 131 LP-KAKKYDRIISCEMMEA---VGHEYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 131 ~~-~~~~fD~I~~~~~l~~---~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
.. ..++||+|+++.++++ ........+++++.++|+|||.+++...
T Consensus 292 ~~~~~~~fD~Ii~npp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n 341 (381)
T 3dmg_A 292 ALTEEARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLVSN 341 (381)
T ss_dssp TSCTTCCEEEEEECCCCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred ccccCCCeEEEEECCchhhcccccHHHHHHHHHHHHHhcCcCcEEEEEEc
Confidence 87 4589999999999887 2337788999999999999999999653
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.62 E-value=1.2e-15 Score=126.77 Aligned_cols=105 Identities=13% Similarity=0.142 Sum_probs=87.9
Q ss_pred CCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCC-C-CCCCCCEEEEccch
Q 048309 69 KEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQL-P-KAKKYDRIISCEMM 146 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~-~-~~~~fD~I~~~~~l 146 (288)
++.+|||+|||+|.++..+++....+|+|+|+|+.+++.|+++++..++ .+++++++|+.+. + ..++||+|++...+
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~ 132 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKA-GNARVVNSNAMSFLAQKGTPHNIVFVDPPF 132 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTC-CSEEEECSCHHHHHSSCCCCEEEEEECCSS
T ss_pred CCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEECCHHHHHhhcCCCCCEEEECCCC
Confidence 5789999999999999987776335999999999999999999999888 5899999999873 4 45789999998774
Q ss_pred hhhCHhhHHHHHHHHhc--ccccCcEEEEEeec
Q 048309 147 EAVGHEYMEEYFGCCES--LLAKDGLLVLQFSS 177 (288)
Q Consensus 147 ~~~~~~~~~~~l~~~~~--~LkpgG~l~~~~~~ 177 (288)
+ . .....+++.+.+ +|+|||++++.+..
T Consensus 133 ~-~--~~~~~~l~~l~~~~~L~pgG~l~i~~~~ 162 (202)
T 2fpo_A 133 R-R--GLLEETINLLEDNGWLADEALIYVESEV 162 (202)
T ss_dssp S-T--TTHHHHHHHHHHTTCEEEEEEEEEEEEG
T ss_pred C-C--CcHHHHHHHHHhcCccCCCcEEEEEECC
Confidence 4 3 456677777754 69999999997765
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.62 E-value=3e-15 Score=126.40 Aligned_cols=112 Identities=19% Similarity=0.265 Sum_probs=95.8
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CC
Q 048309 56 RKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KA 134 (288)
Q Consensus 56 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~ 134 (288)
.....+++.+...++.+|||+|||+|.++..+++. +.+|+|+|+++.+++.+++++...+ +++++.+|+.+.. ..
T Consensus 57 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~---~v~~~~~d~~~~~~~~ 132 (231)
T 1vbf_A 57 NLGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEI-VDKVVSVEINEKMYNYASKLLSYYN---NIKLILGDGTLGYEEE 132 (231)
T ss_dssp HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEEESCHHHHHHHHHHHTTCS---SEEEEESCGGGCCGGG
T ss_pred HHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHH-cCEEEEEeCCHHHHHHHHHHHhhcC---CeEEEECCcccccccC
Confidence 45567778888888999999999999999999986 5899999999999999999987654 7999999998733 56
Q ss_pred CCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCC
Q 048309 135 KKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTP 179 (288)
Q Consensus 135 ~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 179 (288)
++||+|++..+++|+. .++.++|+|||++++......
T Consensus 133 ~~fD~v~~~~~~~~~~--------~~~~~~L~pgG~l~~~~~~~~ 169 (231)
T 1vbf_A 133 KPYDRVVVWATAPTLL--------CKPYEQLKEGGIMILPIGVGR 169 (231)
T ss_dssp CCEEEEEESSBBSSCC--------HHHHHTEEEEEEEEEEECSSS
T ss_pred CCccEEEECCcHHHHH--------HHHHHHcCCCcEEEEEEcCCC
Confidence 7899999999999984 257889999999999865543
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.62 E-value=2.7e-15 Score=125.38 Aligned_cols=104 Identities=19% Similarity=0.156 Sum_probs=83.5
Q ss_pred cCCCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCC----CCCCCCCE
Q 048309 65 ARVSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQL----PKAKKYDR 139 (288)
Q Consensus 65 ~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~----~~~~~fD~ 139 (288)
+.++++.+|||+|||+|..+..+++. +..+|+|+|+|+.+++.+.+.++.. .++.++++|+... +..++||+
T Consensus 53 ~~~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~---~~v~~~~~d~~~~~~~~~~~~~fD~ 129 (210)
T 1nt2_A 53 LKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER---NNIIPLLFDASKPWKYSGIVEKVDL 129 (210)
T ss_dssp CCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC---SSEEEECSCTTCGGGTTTTCCCEEE
T ss_pred cCCCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcC---CCeEEEEcCCCCchhhcccccceeE
Confidence 45678899999999999999999886 3469999999999987777666543 4789999998774 33479999
Q ss_pred EEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 140 IISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 140 I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
|++... .+ .....+++++.++|||||.+++..
T Consensus 130 V~~~~~-~~---~~~~~~l~~~~r~LkpgG~l~i~~ 161 (210)
T 1nt2_A 130 IYQDIA-QK---NQIEILKANAEFFLKEKGEVVIMV 161 (210)
T ss_dssp EEECCC-ST---THHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEecc-Ch---hHHHHHHHHHHHHhCCCCEEEEEE
Confidence 999732 21 345567999999999999999963
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.62 E-value=5.6e-15 Score=119.56 Aligned_cols=111 Identities=12% Similarity=0.211 Sum_probs=94.6
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCC
Q 048309 56 RKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAK 135 (288)
Q Consensus 56 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~ 135 (288)
.....+++.+...++.+|||+|||+|.++..+++ .+.+++|+|+++.+++.++++++..++ .+++++++|+.+..+.+
T Consensus 22 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~~d~~~~~~~~ 99 (183)
T 2yxd_A 22 EIRAVSIGKLNLNKDDVVVDVGCGSGGMTVEIAK-RCKFVYAIDYLDGAIEVTKQNLAKFNI-KNCQIIKGRAEDVLDKL 99 (183)
T ss_dssp HHHHHHHHHHCCCTTCEEEEESCCCSHHHHHHHT-TSSEEEEEECSHHHHHHHHHHHHHTTC-CSEEEEESCHHHHGGGC
T ss_pred HHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEECCccccccCC
Confidence 3445667777777889999999999999999998 688999999999999999999999888 57999999998732557
Q ss_pred CCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEee
Q 048309 136 KYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 136 ~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
+||+|++..+ .+...+++++.++ |||.+++.+.
T Consensus 100 ~~D~i~~~~~------~~~~~~l~~~~~~--~gG~l~~~~~ 132 (183)
T 2yxd_A 100 EFNKAFIGGT------KNIEKIIEILDKK--KINHIVANTI 132 (183)
T ss_dssp CCSEEEECSC------SCHHHHHHHHHHT--TCCEEEEEES
T ss_pred CCcEEEECCc------ccHHHHHHHHhhC--CCCEEEEEec
Confidence 9999999887 3457888888888 9999998653
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1e-15 Score=131.53 Aligned_cols=112 Identities=15% Similarity=0.146 Sum_probs=91.9
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCC---------------------------
Q 048309 66 RVSKEHEVLEIGCGWGTFAIEVVRQTGC-NYTGITLSAEQMKYAEMKVNEAGL--------------------------- 117 (288)
Q Consensus 66 ~~~~~~~vLDiGcG~G~~~~~la~~~~~-~v~giD~s~~~~~~a~~~~~~~g~--------------------------- 117 (288)
...++.+|||+|||+|.++..+++. +. +|+|+|+|+.+++.+++++...+.
T Consensus 53 ~~~~~~~vLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (265)
T 2i62_A 53 GAVKGELLIDIGSGPTIYQLLSACE-SFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEK 131 (265)
T ss_dssp SSCCEEEEEEESCTTCCGGGTTGGG-TEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHH
T ss_pred cccCCCEEEEECCCccHHHHHHhhc-ccCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHH
Confidence 4456789999999999999988876 44 899999999999999988765321
Q ss_pred -CCce-EEEEcccCCCC--CC---CCCCEEEEccchhhhCH--hhHHHHHHHHhcccccCcEEEEEeecC
Q 048309 118 -QDHI-RLYLCDYRQLP--KA---KKYDRIISCEMMEAVGH--EYMEEYFGCCESLLAKDGLLVLQFSST 178 (288)
Q Consensus 118 -~~~v-~~~~~d~~~~~--~~---~~fD~I~~~~~l~~~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~~ 178 (288)
..++ +++++|+.+.. ++ ++||+|++..+++|+++ .++..+++++.++|||||.+++.+...
T Consensus 132 l~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~ 201 (265)
T 2i62_A 132 LRRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALK 201 (265)
T ss_dssp HHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESS
T ss_pred hhhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCC
Confidence 0127 99999998864 34 78999999999995532 588999999999999999999987543
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=5.3e-17 Score=138.18 Aligned_cols=103 Identities=18% Similarity=0.254 Sum_probs=91.9
Q ss_pred CCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCEEEEccchhh
Q 048309 69 KEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMMEA 148 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~~~~~l~~ 148 (288)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++++..++..+++++++|+.+++..++||+|++..++++
T Consensus 78 ~~~~vLD~gcG~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~ 156 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQFALT-GMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLASFLKADVVFLSPPWGG 156 (241)
T ss_dssp CCSEEEETTCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGGGCCCSEEEECCCCSS
T ss_pred CCCEEEECccccCHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcccCCCCEEEECCCcCC
Confidence 6789999999999999999986 689999999999999999999999886689999999998876689999999999998
Q ss_pred hCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 149 VGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 149 ~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
. ......+.++.++|+|||.+++.
T Consensus 157 ~--~~~~~~~~~~~~~L~pgG~~i~~ 180 (241)
T 3gdh_A 157 P--DYATAETFDIRTMMSPDGFEIFR 180 (241)
T ss_dssp G--GGGGSSSBCTTTSCSSCHHHHHH
T ss_pred c--chhhhHHHHHHhhcCCcceeHHH
Confidence 7 45555777889999999997764
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.3e-15 Score=128.70 Aligned_cols=106 Identities=16% Similarity=0.128 Sum_probs=89.5
Q ss_pred HHcCCCCCCEEEEECCcccHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC----CCCC
Q 048309 63 EKARVSKEHEVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP----KAKK 136 (288)
Q Consensus 63 ~~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~----~~~~ 136 (288)
+.+.++||.+|||+|||+|.++..+++. +..+|+|+|+++.|++.++++++.. .|+..+.+|..+.. ..++
T Consensus 71 ~~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~---~ni~~V~~d~~~p~~~~~~~~~ 147 (233)
T 4df3_A 71 IELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDR---RNIFPILGDARFPEKYRHLVEG 147 (233)
T ss_dssp SCCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTC---TTEEEEESCTTCGGGGTTTCCC
T ss_pred hhcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhh---cCeeEEEEeccCccccccccce
Confidence 4567899999999999999999999987 5679999999999999999887654 47999999887643 4578
Q ss_pred CCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 137 YDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 137 fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
+|+|++... |. .+...++.++.+.|||||.+++..
T Consensus 148 vDvVf~d~~--~~--~~~~~~l~~~~r~LKpGG~lvI~i 182 (233)
T 4df3_A 148 VDGLYADVA--QP--EQAAIVVRNARFFLRDGGYMLMAI 182 (233)
T ss_dssp EEEEEECCC--CT--THHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEEEEecc--CC--hhHHHHHHHHHHhccCCCEEEEEE
Confidence 999987533 33 567889999999999999999864
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.62 E-value=2.4e-15 Score=128.95 Aligned_cols=111 Identities=18% Similarity=0.218 Sum_probs=96.5
Q ss_pred HHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCC
Q 048309 58 HSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAK 135 (288)
Q Consensus 58 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~ 135 (288)
...++..+...++.+|||+|||+|.++..+++. ++.+|+++|+++.+++.|+++++..+++++++++++|+.+..+++
T Consensus 82 ~~~i~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 161 (255)
T 3mb5_A 82 AALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIEEE 161 (255)
T ss_dssp HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCCCCC
T ss_pred HHHHHHhhCCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhccCCC
Confidence 346777888889999999999999999999987 378999999999999999999999998767999999998765667
Q ss_pred CCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 136 KYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 136 ~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
+||+|++. . .+...+++++.++|+|||.+++..
T Consensus 162 ~~D~v~~~-----~--~~~~~~l~~~~~~L~~gG~l~~~~ 194 (255)
T 3mb5_A 162 NVDHVILD-----L--PQPERVVEHAAKALKPGGFFVAYT 194 (255)
T ss_dssp SEEEEEEC-----S--SCGGGGHHHHHHHEEEEEEEEEEE
T ss_pred CcCEEEEC-----C--CCHHHHHHHHHHHcCCCCEEEEEE
Confidence 89999984 2 344678999999999999999854
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=7.1e-15 Score=133.06 Aligned_cols=112 Identities=16% Similarity=0.158 Sum_probs=93.8
Q ss_pred HHHHHHcC-CCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCC
Q 048309 59 SLLIEKAR-VSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKK 136 (288)
Q Consensus 59 ~~l~~~~~-~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~ 136 (288)
..+++.+. ..+..+|||||||+|.++..+++. ++.+++++|+ +.+++.+++. .+++++.+|+.+ +.+..
T Consensus 192 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~-~~p~~ 262 (368)
T 3reo_A 192 KKILEMYNGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPAF-------SGVEHLGGDMFD-GVPKG 262 (368)
T ss_dssp HHHHTTCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC-------TTEEEEECCTTT-CCCCC
T ss_pred HHHHHhcccccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhhc-------CCCEEEecCCCC-CCCCC
Confidence 44555555 567789999999999999999987 7889999999 8888776532 479999999987 42233
Q ss_pred CCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCCC
Q 048309 137 YDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPD 180 (288)
Q Consensus 137 fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 180 (288)
|+|++..++||++.++...++++++++|+|||++++.+...+.
T Consensus 263 -D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~ 305 (368)
T 3reo_A 263 -DAIFIKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYILPP 305 (368)
T ss_dssp -SEEEEESCGGGBCHHHHHHHHHHHHHHSCTTCEEEEEECCCCS
T ss_pred -CEEEEechhhcCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCC
Confidence 9999999999998778889999999999999999998877654
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.62 E-value=2.3e-15 Score=134.26 Aligned_cols=112 Identities=23% Similarity=0.329 Sum_probs=93.1
Q ss_pred HHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CCCCCCE
Q 048309 61 LIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAKKYDR 139 (288)
Q Consensus 61 l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~~fD~ 139 (288)
+.+.+...++.+|||||||+|.++..+++.+..+|+|+|++ .+++.|+++++.+++.++++++.+|+.+++ +.++||+
T Consensus 30 i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~ 108 (328)
T 1g6q_1 30 IIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDI 108 (328)
T ss_dssp HHHHHHHHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEE
T ss_pred HHhhHhhcCCCEEEEecCccHHHHHHHHHCCCCEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccE
Confidence 33344445778999999999999999998744599999999 599999999999999878999999999987 5589999
Q ss_pred EEEccchhhh-CHhhHHHHHHHHhcccccCcEEEE
Q 048309 140 IISCEMMEAV-GHEYMEEYFGCCESLLAKDGLLVL 173 (288)
Q Consensus 140 I~~~~~l~~~-~~~~~~~~l~~~~~~LkpgG~l~~ 173 (288)
|++..+.+++ ....+..++..+.++|+|||.++.
T Consensus 109 Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li~ 143 (328)
T 1g6q_1 109 IISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp EEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred EEEeCchhhcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence 9998654443 225678899999999999999974
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.6e-15 Score=126.05 Aligned_cols=108 Identities=19% Similarity=0.362 Sum_probs=91.6
Q ss_pred HHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCC--C-CCCC
Q 048309 60 LLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQL--P-KAKK 136 (288)
Q Consensus 60 ~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~--~-~~~~ 136 (288)
.+++.+. .++.+|||+|||+|.++..+++. +.+++|+|+++.+++.++++. .+++.+|+.+. + ++++
T Consensus 24 ~l~~~~~-~~~~~vLdiG~G~G~~~~~l~~~-~~~~~~~D~~~~~~~~~~~~~--------~~~~~~d~~~~~~~~~~~~ 93 (230)
T 3cc8_A 24 NLLKHIK-KEWKEVLDIGCSSGALGAAIKEN-GTRVSGIEAFPEAAEQAKEKL--------DHVVLGDIETMDMPYEEEQ 93 (230)
T ss_dssp HHHTTCC-TTCSEEEEETCTTSHHHHHHHTT-TCEEEEEESSHHHHHHHHTTS--------SEEEESCTTTCCCCSCTTC
T ss_pred HHHHHhc-cCCCcEEEeCCCCCHHHHHHHhc-CCeEEEEeCCHHHHHHHHHhC--------CcEEEcchhhcCCCCCCCc
Confidence 4455554 57889999999999999999987 689999999999999887652 37899999873 3 4579
Q ss_pred CCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCC
Q 048309 137 YDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTP 179 (288)
Q Consensus 137 fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 179 (288)
||+|++..+++|+ .+...+++++.++|+|||.+++.+....
T Consensus 94 fD~v~~~~~l~~~--~~~~~~l~~~~~~L~~gG~l~~~~~~~~ 134 (230)
T 3cc8_A 94 FDCVIFGDVLEHL--FDPWAVIEKVKPYIKQNGVILASIPNVS 134 (230)
T ss_dssp EEEEEEESCGGGS--SCHHHHHHHTGGGEEEEEEEEEEEECTT
T ss_pred cCEEEECChhhhc--CCHHHHHHHHHHHcCCCCEEEEEeCCcc
Confidence 9999999999999 6778999999999999999999876543
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=5.3e-15 Score=128.61 Aligned_cols=118 Identities=13% Similarity=0.250 Sum_probs=97.0
Q ss_pred HHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCC
Q 048309 55 MRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPK 133 (288)
Q Consensus 55 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~ 133 (288)
...+..+++.+. .++.+|||+|||+|..+..+++. ++.+|+|+|+|+.+++.++++++..+++ +++++++|+.+..+
T Consensus 96 e~l~~~~l~~~~-~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~-~v~~~~~d~~~~~~ 173 (276)
T 2b3t_A 96 ECLVEQALARLP-EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIK-NIHILQSDWFSALA 173 (276)
T ss_dssp HHHHHHHHHHSC-SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCC-SEEEECCSTTGGGT
T ss_pred HHHHHHHHHhcc-cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-ceEEEEcchhhhcc
Confidence 345566777765 56789999999999999999976 6789999999999999999999988885 79999999987544
Q ss_pred CCCCCEEEEccch-------------hhhCH----------hhHHHHHHHHhcccccCcEEEEE
Q 048309 134 AKKYDRIISCEMM-------------EAVGH----------EYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 134 ~~~fD~I~~~~~l-------------~~~~~----------~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
.++||+|+++..+ +|.+. .....+++++.++|+|||.+++.
T Consensus 174 ~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~ 237 (276)
T 2b3t_A 174 GQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLE 237 (276)
T ss_dssp TCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred cCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 5789999998432 22211 35688999999999999999985
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.61 E-value=3.8e-15 Score=124.09 Aligned_cols=115 Identities=18% Similarity=0.146 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc-c-CCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCC
Q 048309 53 AQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-T-GCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQ 130 (288)
Q Consensus 53 a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~-~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~ 130 (288)
.....+..++.. .++.+|||||||+|..+..+++. + +.+|+++|+++.+++.|+++++..++.++++++++|+.+
T Consensus 43 ~~~~~l~~l~~~---~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 119 (210)
T 3c3p_A 43 QTGRLLYLLARI---KQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLG 119 (210)
T ss_dssp HHHHHHHHHHHH---HCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHH
T ss_pred HHHHHHHHHHHh---hCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHH
Confidence 344444444443 25679999999999999999987 3 689999999999999999999988886679999999976
Q ss_pred C-C-CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEee
Q 048309 131 L-P-KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 131 ~-~-~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
. + .++ ||+|++.... .+...+++++.++|+|||++++.+.
T Consensus 120 ~~~~~~~-fD~v~~~~~~-----~~~~~~l~~~~~~LkpgG~lv~~~~ 161 (210)
T 3c3p_A 120 IAAGQRD-IDILFMDCDV-----FNGADVLERMNRCLAKNALLIAVNA 161 (210)
T ss_dssp HHTTCCS-EEEEEEETTT-----SCHHHHHHHHGGGEEEEEEEEEESS
T ss_pred HhccCCC-CCEEEEcCCh-----hhhHHHHHHHHHhcCCCeEEEEECc
Confidence 4 3 345 9999987432 4568899999999999999998654
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=2.8e-15 Score=143.09 Aligned_cols=110 Identities=16% Similarity=0.211 Sum_probs=92.0
Q ss_pred CCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC---CCCCCCEEEEccc
Q 048309 69 KEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP---KAKKYDRIISCEM 145 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~---~~~~fD~I~~~~~ 145 (288)
.+.+|||||||+|.++..+|+. |++|+|||+++.+++.|+..+.+.|. .++++.+++++++. .+++||+|+|..+
T Consensus 66 ~~~~vLDvGCG~G~~~~~la~~-ga~V~giD~~~~~i~~a~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~fD~v~~~e~ 143 (569)
T 4azs_A 66 RPLNVLDLGCAQGFFSLSLASK-GATIVGIDFQQENINVCRALAEENPD-FAAEFRVGRIEEVIAALEEGEFDLAIGLSV 143 (569)
T ss_dssp SCCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHTSTT-SEEEEEECCHHHHHHHCCTTSCSEEEEESC
T ss_pred CCCeEEEECCCCcHHHHHHHhC-CCEEEEECCCHHHHHHHHHHHHhcCC-CceEEEECCHHHHhhhccCCCccEEEECcc
Confidence 5679999999999999999996 89999999999999999999988874 27999999999873 4679999999999
Q ss_pred hhhhCHhhHHHHHHHHhcccccCcEEEEEeecCCC
Q 048309 146 MEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPD 180 (288)
Q Consensus 146 l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 180 (288)
++|++..+....+..+.+.|+++|..++..+...+
T Consensus 144 ~ehv~~~~~~~~~~~~~~tl~~~~~~~~~~~~~~e 178 (569)
T 4azs_A 144 FHHIVHLHGIDEVKRLLSRLADVTQAVILELAVKE 178 (569)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHSSEEEEECCCTT
T ss_pred hhcCCCHHHHHHHHHHHHHhccccceeeEEecccc
Confidence 99994333233455677889999988887665443
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.61 E-value=3.6e-16 Score=129.95 Aligned_cols=117 Identities=15% Similarity=0.151 Sum_probs=75.2
Q ss_pred HHHHHHHHHHcCC-CCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC
Q 048309 55 MRKHSLLIEKARV-SKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP 132 (288)
Q Consensus 55 ~~~~~~l~~~~~~-~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~ 132 (288)
...+..+++.+.. .++.+|||+|||+|.++..+++. ++.+++|+|+|+.+++.+++++...++ +++++++|+.+..
T Consensus 15 ~~~~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~ 92 (215)
T 4dzr_A 15 EVLVEEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGA--VVDWAAADGIEWL 92 (215)
T ss_dssp HHHHHHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC---------------------CCHHHHHHHH
T ss_pred HHHHHHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCC--ceEEEEcchHhhh
Confidence 3455667777765 67889999999999999999987 467999999999999999999988776 7899999998732
Q ss_pred CC-----CCCCEEEEccchhh------hCHhh------------------HHHHHHHHhcccccCcEEEE
Q 048309 133 KA-----KKYDRIISCEMMEA------VGHEY------------------MEEYFGCCESLLAKDGLLVL 173 (288)
Q Consensus 133 ~~-----~~fD~I~~~~~l~~------~~~~~------------------~~~~l~~~~~~LkpgG~l~~ 173 (288)
.. ++||+|+++..+.+ ++... ...+++++.++|+|||.+++
T Consensus 93 ~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 162 (215)
T 4dzr_A 93 IERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVF 162 (215)
T ss_dssp HHHHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEE
T ss_pred hhhhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEE
Confidence 43 89999999755432 21111 27889999999999999444
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.2e-14 Score=131.36 Aligned_cols=112 Identities=14% Similarity=0.126 Sum_probs=95.0
Q ss_pred HHHHHHcC-CCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCC
Q 048309 59 SLLIEKAR-VSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKK 136 (288)
Q Consensus 59 ~~l~~~~~-~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~ 136 (288)
..+++.+. ..+..+|||||||+|.++..+++. ++.+++++|+ +.+++.+++. ++++++.+|+.+ +.+..
T Consensus 190 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~p~~ 260 (364)
T 3p9c_A 190 KKLLELYHGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQF-------PGVTHVGGDMFK-EVPSG 260 (364)
T ss_dssp HHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC-------TTEEEEECCTTT-CCCCC
T ss_pred HHHHHhcccccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhhc-------CCeEEEeCCcCC-CCCCC
Confidence 45666665 667889999999999999999987 7889999999 8888766532 479999999987 52233
Q ss_pred CCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCCC
Q 048309 137 YDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPD 180 (288)
Q Consensus 137 fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 180 (288)
|+|++..++|++++++...+++++++.|+|||++++.+...++
T Consensus 261 -D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~ 303 (364)
T 3p9c_A 261 -DTILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQCILPV 303 (364)
T ss_dssp -SEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEECCBCS
T ss_pred -CEEEehHHhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCC
Confidence 9999999999998888889999999999999999998877654
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=3.3e-15 Score=130.17 Aligned_cols=104 Identities=14% Similarity=0.238 Sum_probs=90.5
Q ss_pred CCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCEEEEccchh
Q 048309 68 SKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMME 147 (288)
Q Consensus 68 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~~~~~l~ 147 (288)
+++.+|||+|||+|.++..+++....+|+|+|+|+.+++.|+++++.+++.++++++++|+.++...++||+|++....
T Consensus 124 ~~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~~~~fD~Vi~~~p~- 202 (278)
T 2frn_A 124 KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYVV- 202 (278)
T ss_dssp CTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCCS-
T ss_pred CCCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcccCCccEEEECCch-
Confidence 4688999999999999999998733379999999999999999999999976799999999998777899999996442
Q ss_pred hhCHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 148 AVGHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 148 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
....++.++.++|+|||.+++.+..
T Consensus 203 -----~~~~~l~~~~~~LkpgG~l~~~~~~ 227 (278)
T 2frn_A 203 -----RTHEFIPKALSIAKDGAIIHYHNTV 227 (278)
T ss_dssp -----SGGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred -----hHHHHHHHHHHHCCCCeEEEEEEee
Confidence 2356888899999999999997765
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.6e-16 Score=131.88 Aligned_cols=111 Identities=15% Similarity=0.220 Sum_probs=86.2
Q ss_pred HHHcCCCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHH----HHcCCCCceEEEEcccCCCC-CCC
Q 048309 62 IEKARVSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKV----NEAGLQDHIRLYLCDYRQLP-KAK 135 (288)
Q Consensus 62 ~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~----~~~g~~~~v~~~~~d~~~~~-~~~ 135 (288)
++.+...++.+|||||||+|.++..+++. ++.+|+|+|+|+.|++.+.+.+ ...++ ++++++++|+.+++ ..+
T Consensus 20 ~~~l~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~-~~v~~~~~d~~~l~~~~~ 98 (218)
T 3mq2_A 20 FEQLRSQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGL-PNLLYLWATAERLPPLSG 98 (218)
T ss_dssp HHHHHTTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCC-TTEEEEECCSTTCCSCCC
T ss_pred HHHhhccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCC-CceEEEecchhhCCCCCC
Confidence 44445678889999999999999999987 5789999999999888643333 34555 48999999999988 445
Q ss_pred CCCEEEEccc---h--hhhCHhhHHHHHHHHhcccccCcEEEEEee
Q 048309 136 KYDRIISCEM---M--EAVGHEYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 136 ~fD~I~~~~~---l--~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
+ |.|+.... . +|+ .+...+++++.++|||||.+++...
T Consensus 99 ~-d~v~~~~~~~~~~~~~~--~~~~~~l~~~~~~LkpgG~l~~~~~ 141 (218)
T 3mq2_A 99 V-GELHVLMPWGSLLRGVL--GSSPEMLRGMAAVCRPGASFLVALN 141 (218)
T ss_dssp E-EEEEEESCCHHHHHHHH--TSSSHHHHHHHHTEEEEEEEEEEEE
T ss_pred C-CEEEEEccchhhhhhhh--ccHHHHHHHHHHHcCCCcEEEEEec
Confidence 5 77764432 2 255 4558899999999999999999543
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.1e-15 Score=130.09 Aligned_cols=113 Identities=14% Similarity=0.229 Sum_probs=92.8
Q ss_pred HHHcCCCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHH---cCCCCceEEEEcccCCCC-----
Q 048309 62 IEKARVSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNE---AGLQDHIRLYLCDYRQLP----- 132 (288)
Q Consensus 62 ~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~---~g~~~~v~~~~~d~~~~~----- 132 (288)
...+...++.+|||+|||+|.++..+++. ++.+|+|+|+++.+++.|+++++. +++.++++++++|+.+..
T Consensus 29 ~~~~~~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~ 108 (260)
T 2ozv_A 29 ASLVADDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVE 108 (260)
T ss_dssp HHTCCCCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHH
T ss_pred HHHhcccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhh
Confidence 34456667889999999999999999987 567999999999999999999988 888667999999999871
Q ss_pred ---CCCCCCEEEEccchhhh----------------CHhhHHHHHHHHhcccccCcEEEEE
Q 048309 133 ---KAKKYDRIISCEMMEAV----------------GHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 133 ---~~~~fD~I~~~~~l~~~----------------~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
..++||+|+++..+... .......+++.+.++|+|||.+++.
T Consensus 109 ~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 169 (260)
T 2ozv_A 109 AGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLI 169 (260)
T ss_dssp TTCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEE
T ss_pred hccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEE
Confidence 35789999998544321 1234678999999999999999984
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.60 E-value=2.3e-15 Score=128.96 Aligned_cols=120 Identities=9% Similarity=0.053 Sum_probs=94.0
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc---cCCEEEEEcCCHHHHHHHHHHHHHc---CCCCc---------
Q 048309 56 RKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ---TGCNYTGITLSAEQMKYAEMKVNEA---GLQDH--------- 120 (288)
Q Consensus 56 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~---~~~~v~giD~s~~~~~~a~~~~~~~---g~~~~--------- 120 (288)
..+..+++.+...++.+|||+|||+|.++..+++. ++.+|+|+|+|+.+++.|++++... ++..+
T Consensus 38 ~l~~~~l~~~~~~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~ 117 (250)
T 1o9g_A 38 EIFQRALARLPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSE 117 (250)
T ss_dssp HHHHHHHHTSSCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhh
Confidence 44556666665456789999999999999999875 3568999999999999999887765 43212
Q ss_pred ----------------eE-------------EEEcccCCCC------CCCCCCEEEEccchhhhC-------HhhHHHHH
Q 048309 121 ----------------IR-------------LYLCDYRQLP------KAKKYDRIISCEMMEAVG-------HEYMEEYF 158 (288)
Q Consensus 121 ----------------v~-------------~~~~d~~~~~------~~~~fD~I~~~~~l~~~~-------~~~~~~~l 158 (288)
++ ++++|+.+.. ...+||+|+++..+.+.. .+....++
T Consensus 118 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l 197 (250)
T 1o9g_A 118 RFGKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLL 197 (250)
T ss_dssp HHCCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHH
T ss_pred hcccccchhhhhhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHH
Confidence 56 9999998754 234899999987766542 25577899
Q ss_pred HHHhcccccCcEEEEEe
Q 048309 159 GCCESLLAKDGLLVLQF 175 (288)
Q Consensus 159 ~~~~~~LkpgG~l~~~~ 175 (288)
+++.++|+|||++++..
T Consensus 198 ~~~~~~LkpgG~l~~~~ 214 (250)
T 1o9g_A 198 RSLASALPAHAVIAVTD 214 (250)
T ss_dssp HHHHHHSCTTCEEEEEE
T ss_pred HHHHHhcCCCcEEEEeC
Confidence 99999999999999843
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.60 E-value=1.6e-15 Score=121.73 Aligned_cols=105 Identities=18% Similarity=0.276 Sum_probs=85.7
Q ss_pred CCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCC-C----CCCCCCEEEEc
Q 048309 69 KEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQL-P----KAKKYDRIISC 143 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~-~----~~~~fD~I~~~ 143 (288)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.++++++..++ +++++++|+.+. + ..++||+|++.
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~D~i~~~ 117 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASE-GWEAVLVEKDPEAVRLLKENVRRTGL--GARVVALPVEVFLPEAKAQGERFTVAFMA 117 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHT-TCEEEEECCCHHHHHHHHHHHHHHTC--CCEEECSCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeEEEeCCCcCHHHHHHHHC-CCeEEEEeCCHHHHHHHHHHHHHcCC--ceEEEeccHHHHHHhhhccCCceEEEEEC
Confidence 6789999999999999999986 56799999999999999999998876 799999999874 2 13489999998
Q ss_pred cchhhhCHhhHHHHHHHHh--cccccCcEEEEEeecCCC
Q 048309 144 EMMEAVGHEYMEEYFGCCE--SLLAKDGLLVLQFSSTPD 180 (288)
Q Consensus 144 ~~l~~~~~~~~~~~l~~~~--~~LkpgG~l~~~~~~~~~ 180 (288)
.+++ - ....+++.+. ++|+|||.+++.+.....
T Consensus 118 ~~~~-~---~~~~~~~~~~~~~~L~~gG~~~~~~~~~~~ 152 (171)
T 1ws6_A 118 PPYA-M---DLAALFGELLASGLVEAGGLYVLQHPKDLY 152 (171)
T ss_dssp CCTT-S---CTTHHHHHHHHHTCEEEEEEEEEEEETTSC
T ss_pred CCCc-h---hHHHHHHHHHhhcccCCCcEEEEEeCCccC
Confidence 7765 2 2234455555 999999999998765443
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.60 E-value=8e-16 Score=131.43 Aligned_cols=120 Identities=18% Similarity=0.134 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEccc
Q 048309 51 KVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDY 128 (288)
Q Consensus 51 ~~a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~ 128 (288)
...+.+.+..++... ++.+|||||||+|..+..+++. .+.+|+++|+++.+++.|+++++..|+.++++++++|+
T Consensus 45 ~~~~~~~l~~l~~~~---~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda 121 (242)
T 3r3h_A 45 APEQAQFMQMLIRLT---RAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPA 121 (242)
T ss_dssp CHHHHHHHHHHHHHH---TCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCH
T ss_pred CHHHHHHHHHHHhhc---CcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCH
Confidence 345556666665543 4679999999999999999986 36799999999999999999999999977999999999
Q ss_pred CCCC--C-----CCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecC
Q 048309 129 RQLP--K-----AKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSST 178 (288)
Q Consensus 129 ~~~~--~-----~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 178 (288)
.+.. . .++||+|++.... .+...+++++.++|+|||++++.+...
T Consensus 122 ~~~l~~~~~~~~~~~fD~V~~d~~~-----~~~~~~l~~~~~~LkpGG~lv~d~~~~ 173 (242)
T 3r3h_A 122 LDTLHSLLNEGGEHQFDFIFIDADK-----TNYLNYYELALKLVTPKGLIAIDNIFW 173 (242)
T ss_dssp HHHHHHHHHHHCSSCEEEEEEESCG-----GGHHHHHHHHHHHEEEEEEEEEECSSS
T ss_pred HHHHHHHhhccCCCCEeEEEEcCCh-----HHhHHHHHHHHHhcCCCeEEEEECCcc
Confidence 7653 2 5899999987652 456789999999999999999976553
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.4e-14 Score=125.72 Aligned_cols=105 Identities=18% Similarity=0.221 Sum_probs=86.3
Q ss_pred CCCEEEEECCcccH----HHHHHHHc-c----CCEEEEEcCCHHHHHHHHHHHHH-----------------------cC
Q 048309 69 KEHEVLEIGCGWGT----FAIEVVRQ-T----GCNYTGITLSAEQMKYAEMKVNE-----------------------AG 116 (288)
Q Consensus 69 ~~~~vLDiGcG~G~----~~~~la~~-~----~~~v~giD~s~~~~~~a~~~~~~-----------------------~g 116 (288)
++.+|||+|||||. +++.+++. + +.+|+|+|+|+.+++.|++.+.. .|
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~ 184 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 184 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence 45799999999998 66666664 3 36899999999999999986410 00
Q ss_pred -------CCCceEEEEcccCCCC-C-CCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEE
Q 048309 117 -------LQDHIRLYLCDYRQLP-K-AKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVL 173 (288)
Q Consensus 117 -------~~~~v~~~~~d~~~~~-~-~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~ 173 (288)
+..+++|.++|+.+.+ + .++||+|+|.+++.|++++...++++++++.|+|||.+++
T Consensus 185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~l 250 (274)
T 1af7_A 185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFA 250 (274)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEE
Confidence 0136999999999854 2 5789999999999999877889999999999999999998
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=99.59 E-value=8.4e-15 Score=124.64 Aligned_cols=117 Identities=14% Similarity=0.096 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc-c-CCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccC
Q 048309 52 VAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-T-GCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYR 129 (288)
Q Consensus 52 ~a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~-~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~ 129 (288)
..+.+.+..++.. .++.+|||||||+|..+..+++. + +.+|+++|+++.+++.|+++++..|+.++++++++|+.
T Consensus 56 ~~~~~~l~~l~~~---~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~ 132 (237)
T 3c3y_A 56 PLAGQLMSFVLKL---VNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAM 132 (237)
T ss_dssp HHHHHHHHHHHHH---TTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHH
T ss_pred HHHHHHHHHHHHh---hCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHH
Confidence 4455555555554 35679999999999999999987 3 68999999999999999999999998778999999997
Q ss_pred CCC--C------CCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEee
Q 048309 130 QLP--K------AKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 130 ~~~--~------~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
+.. . .++||+|++.... .+...+++++.++|+|||++++.+.
T Consensus 133 ~~l~~l~~~~~~~~~fD~I~~d~~~-----~~~~~~l~~~~~~L~pGG~lv~d~~ 182 (237)
T 3c3y_A 133 LALDNLLQGQESEGSYDFGFVDADK-----PNYIKYHERLMKLVKVGGIVAYDNT 182 (237)
T ss_dssp HHHHHHHHSTTCTTCEEEEEECSCG-----GGHHHHHHHHHHHEEEEEEEEEECT
T ss_pred HHHHHHHhccCCCCCcCEEEECCch-----HHHHHHHHHHHHhcCCCeEEEEecC
Confidence 642 1 5789999987432 4568899999999999999998654
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=7.1e-15 Score=126.64 Aligned_cols=128 Identities=9% Similarity=0.024 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHHHcCC-CCCCEEEEECCcc--cHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEE
Q 048309 51 KVAQMRKHSLLIEKARV-SKEHEVLEIGCGW--GTFAIEVVRQ--TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYL 125 (288)
Q Consensus 51 ~~a~~~~~~~l~~~~~~-~~~~~vLDiGcG~--G~~~~~la~~--~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~ 125 (288)
..+.+.++.+.++.+.. ....+|||||||+ +.++..+++. ++++|+++|.|+.|++.|++++...+. .++++++
T Consensus 59 a~~nr~fl~rav~~l~~~~g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~-~~~~~v~ 137 (277)
T 3giw_A 59 MRANRDWMNRAVAHLAKEAGIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPE-GRTAYVE 137 (277)
T ss_dssp HHHHHHHHHHHHHHHHHTSCCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSS-SEEEEEE
T ss_pred HHHHHHHHHHHHHHhccccCCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCC-CcEEEEE
Confidence 34556667777777653 2446899999997 4445555554 788999999999999999998865432 4799999
Q ss_pred cccCCCC-----C--CCCCC-----EEEEccchhhhCHhh-HHHHHHHHhcccccCcEEEEEeecCC
Q 048309 126 CDYRQLP-----K--AKKYD-----RIISCEMMEAVGHEY-MEEYFGCCESLLAKDGLLVLQFSSTP 179 (288)
Q Consensus 126 ~d~~~~~-----~--~~~fD-----~I~~~~~l~~~~~~~-~~~~l~~~~~~LkpgG~l~~~~~~~~ 179 (288)
+|+.+.. + .+.|| +|+++.++||+++.+ +..+++++.+.|+|||+|++++.+..
T Consensus 138 aD~~~~~~~l~~~~~~~~~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~d 204 (277)
T 3giw_A 138 ADMLDPASILDAPELRDTLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTAE 204 (277)
T ss_dssp CCTTCHHHHHTCHHHHTTCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECCT
T ss_pred ecccChhhhhcccccccccCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccCC
Confidence 9998852 1 35566 688999999996544 68999999999999999999887754
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=3.9e-15 Score=126.57 Aligned_cols=108 Identities=15% Similarity=0.255 Sum_probs=84.6
Q ss_pred CCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHH------cCCCCceEEEEcccCC-CC---CCC
Q 048309 67 VSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNE------AGLQDHIRLYLCDYRQ-LP---KAK 135 (288)
Q Consensus 67 ~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~------~g~~~~v~~~~~d~~~-~~---~~~ 135 (288)
..++.+|||||||+|.++..+++. ++..|+|+|+|+.+++.|+++++. .++ .|++++++|+.+ ++ +++
T Consensus 44 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~-~nv~~~~~d~~~~l~~~~~~~ 122 (235)
T 3ckk_A 44 AQAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGF-QNIACLRSNAMKHLPNFFYKG 122 (235)
T ss_dssp --CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCC-TTEEEEECCTTTCHHHHCCTT
T ss_pred cCCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCC-CeEEEEECcHHHhhhhhCCCc
Confidence 346679999999999999999987 678999999999999999988764 345 589999999987 43 468
Q ss_pred CCCEEEEccchhhhCHh------hHHHHHHHHhcccccCcEEEEEe
Q 048309 136 KYDRIISCEMMEAVGHE------YMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 136 ~fD~I~~~~~l~~~~~~------~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
+||.|++.+...+.... ....+++++.++|||||.+++.+
T Consensus 123 ~~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~t 168 (235)
T 3ckk_A 123 QLTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTIT 168 (235)
T ss_dssp CEEEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred CeeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEe
Confidence 99999987654433100 01479999999999999999864
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.59 E-value=4e-15 Score=133.46 Aligned_cols=115 Identities=17% Similarity=0.267 Sum_probs=97.0
Q ss_pred HHHHHHcCCCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCC
Q 048309 59 SLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKY 137 (288)
Q Consensus 59 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~f 137 (288)
..+++.+...++.+|||+|||+|.++..+++. +..+|+++|+|+.+++.++++++..++. ++++.+|+.+.. +++|
T Consensus 186 ~~ll~~l~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~--~~~~~~d~~~~~-~~~f 262 (343)
T 2pjd_A 186 QLLLSTLTPHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVE--GEVFASNVFSEV-KGRF 262 (343)
T ss_dssp HHHHHHSCTTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCC--CEEEECSTTTTC-CSCE
T ss_pred HHHHHhcCcCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC--CEEEEccccccc-cCCe
Confidence 45666665556779999999999999999987 4569999999999999999999988863 678899987765 5789
Q ss_pred CEEEEccchhh---hCHhhHHHHHHHHhcccccCcEEEEEee
Q 048309 138 DRIISCEMMEA---VGHEYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 138 D~I~~~~~l~~---~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
|+|+++.++++ ........+++++.++|+|||.+++...
T Consensus 263 D~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 304 (343)
T 2pjd_A 263 DMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (343)
T ss_dssp EEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred eEEEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEc
Confidence 99999988875 2236778999999999999999999654
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=1e-15 Score=129.29 Aligned_cols=107 Identities=14% Similarity=0.142 Sum_probs=81.7
Q ss_pred CCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCC-HHHHHHH---HHHHHHcCCCCceEEEEcccCCCCC--CCCCCEE
Q 048309 68 SKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLS-AEQMKYA---EMKVNEAGLQDHIRLYLCDYRQLPK--AKKYDRI 140 (288)
Q Consensus 68 ~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s-~~~~~~a---~~~~~~~g~~~~v~~~~~d~~~~~~--~~~fD~I 140 (288)
.++.+|||||||+|.++..+++. ++.+|+|+|+| +.|++.| ++++...+++ +++++++|+.+++. .+.+|.|
T Consensus 23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~-~v~~~~~d~~~l~~~~~d~v~~i 101 (225)
T 3p2e_A 23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLS-NVVFVIAAAESLPFELKNIADSI 101 (225)
T ss_dssp TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCS-SEEEECCBTTBCCGGGTTCEEEE
T ss_pred CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCC-CeEEEEcCHHHhhhhccCeEEEE
Confidence 47789999999999999999965 67899999999 6666666 7777777874 89999999999862 2455555
Q ss_pred EEccchhhh---CHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 141 ISCEMMEAV---GHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 141 ~~~~~l~~~---~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
++.....+. ...+...+++++.++|||||.+++..
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~ 139 (225)
T 3p2e_A 102 SILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVT 139 (225)
T ss_dssp EEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEEE
T ss_pred EEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEEE
Confidence 555433221 00123578999999999999999843
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.58 E-value=4.7e-15 Score=128.90 Aligned_cols=110 Identities=15% Similarity=0.234 Sum_probs=90.9
Q ss_pred HHHHHHcCCCCCCEEEEECCcccHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHc-CCCCceEEEEcccCCCCCCC
Q 048309 59 SLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQMKYAEMKVNEA-GLQDHIRLYLCDYRQLPKAK 135 (288)
Q Consensus 59 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~giD~s~~~~~~a~~~~~~~-g~~~~v~~~~~d~~~~~~~~ 135 (288)
..+++.+.+.++.+|||+|||+|..+..+++. ++.+|+|+|+++.+++.++++++.. |. ++++++++|+.+..+++
T Consensus 100 ~~~~~~~~~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~-~~v~~~~~d~~~~~~~~ 178 (275)
T 1yb2_A 100 SYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDI-GNVRTSRSDIADFISDQ 178 (275)
T ss_dssp ------CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCC-TTEEEECSCTTTCCCSC
T ss_pred HHHHHHcCCCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCC-CcEEEEECchhccCcCC
Confidence 45677778889999999999999999999886 4689999999999999999999887 75 58999999998844567
Q ss_pred CCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEee
Q 048309 136 KYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 136 ~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
+||+|++ ++ .+...+++++.++|+|||.+++.+.
T Consensus 179 ~fD~Vi~-----~~--~~~~~~l~~~~~~LkpgG~l~i~~~ 212 (275)
T 1yb2_A 179 MYDAVIA-----DI--PDPWNHVQKIASMMKPGSVATFYLP 212 (275)
T ss_dssp CEEEEEE-----CC--SCGGGSHHHHHHTEEEEEEEEEEES
T ss_pred CccEEEE-----cC--cCHHHHHHHHHHHcCCCCEEEEEeC
Confidence 8999998 34 4557899999999999999999653
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.1e-14 Score=123.43 Aligned_cols=115 Identities=21% Similarity=0.281 Sum_probs=95.4
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCC-CCCC
Q 048309 56 RKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQ-LPKA 134 (288)
Q Consensus 56 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~-~~~~ 134 (288)
.....+++.+...++.+|||||||+|.++..+++..+.+|+++|+++.+++.|+++++..+++ +++++.+|+.. ++..
T Consensus 78 ~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~ 156 (235)
T 1jg1_A 78 HMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVK-NVHVILGDGSKGFPPK 156 (235)
T ss_dssp HHHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCGGGCCGGG
T ss_pred HHHHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCC-CcEEEECCcccCCCCC
Confidence 345567777788889999999999999999999873379999999999999999999988884 69999999733 2334
Q ss_pred CCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCC
Q 048309 135 KKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTP 179 (288)
Q Consensus 135 ~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 179 (288)
.+||+|++..+++++.. ++.+.|+|||++++......
T Consensus 157 ~~fD~Ii~~~~~~~~~~--------~~~~~L~pgG~lvi~~~~~~ 193 (235)
T 1jg1_A 157 APYDVIIVTAGAPKIPE--------PLIEQLKIGGKLIIPVGSYH 193 (235)
T ss_dssp CCEEEEEECSBBSSCCH--------HHHHTEEEEEEEEEEECSSS
T ss_pred CCccEEEECCcHHHHHH--------HHHHhcCCCcEEEEEEecCC
Confidence 56999999999988842 57789999999999776543
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=2.7e-15 Score=135.47 Aligned_cols=105 Identities=20% Similarity=0.238 Sum_probs=88.6
Q ss_pred CCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCEEEEccchh
Q 048309 68 SKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMME 147 (288)
Q Consensus 68 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~~~~~l~ 147 (288)
.++++|||||||+|.++..+|+....+|++||.|+ +++.|++.++.+|+.++|+++.+|++++..++++|+|++...-.
T Consensus 82 ~~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lpe~~DvivsE~~~~ 160 (376)
T 4hc4_A 82 LRGKTVLDVGAGTGILSIFCAQAGARRVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPVETVELPEQVDAIVSEWMGY 160 (376)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEECCCCBT
T ss_pred cCCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeeeeeecCCccccEEEeecccc
Confidence 36889999999999999988886446899999986 88999999999999889999999999998668999999854322
Q ss_pred hh-CHhhHHHHHHHHhcccccCcEEEE
Q 048309 148 AV-GHEYMEEYFGCCESLLAKDGLLVL 173 (288)
Q Consensus 148 ~~-~~~~~~~~l~~~~~~LkpgG~l~~ 173 (288)
.+ ....+..++....++|+|||.++-
T Consensus 161 ~l~~e~~l~~~l~a~~r~Lkp~G~~iP 187 (376)
T 4hc4_A 161 GLLHESMLSSVLHARTKWLKEGGLLLP 187 (376)
T ss_dssp TBTTTCSHHHHHHHHHHHEEEEEEEES
T ss_pred cccccchhhhHHHHHHhhCCCCceECC
Confidence 22 224678888889999999999874
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=9.5e-15 Score=132.39 Aligned_cols=112 Identities=15% Similarity=0.166 Sum_probs=93.9
Q ss_pred HHHHHHcC-CCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCC
Q 048309 59 SLLIEKAR-VSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKK 136 (288)
Q Consensus 59 ~~l~~~~~-~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~ 136 (288)
..+++.+. ..++.+|||||||+|.++..+++. +..+++++|+ +.+++.+++ . ++++++.+|+.+ +.+.
T Consensus 198 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~------~-~~v~~~~~d~~~-~~~~- 267 (372)
T 1fp1_D 198 KRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPP------L-SGIEHVGGDMFA-SVPQ- 267 (372)
T ss_dssp HHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC------C-TTEEEEECCTTT-CCCC-
T ss_pred HHHHHHhhccCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhh------c-CCCEEEeCCccc-CCCC-
Confidence 45666665 667789999999999999999987 6789999999 999887764 2 469999999987 5223
Q ss_pred CCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCCC
Q 048309 137 YDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPD 180 (288)
Q Consensus 137 fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 180 (288)
||+|++..+++|++.+....++++++++|+|||++++.+...+.
T Consensus 268 ~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~ 311 (372)
T 1fp1_D 268 GDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPE 311 (372)
T ss_dssp EEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECS
T ss_pred CCEEEEecccccCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCC
Confidence 99999999999997666669999999999999999998876554
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.58 E-value=2.5e-14 Score=121.86 Aligned_cols=111 Identities=15% Similarity=0.189 Sum_probs=96.4
Q ss_pred HHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CCCC
Q 048309 58 HSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAKK 136 (288)
Q Consensus 58 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~~ 136 (288)
...++..+...++.+|||+|||+|.++..+++. +.+|+++|+++.+++.|+++.+..++..++++..+|+.+.. .+++
T Consensus 80 ~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 158 (248)
T 2yvl_A 80 SFYIALKLNLNKEKRVLEFGTGSGALLAVLSEV-AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEGI 158 (248)
T ss_dssp HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTTC
T ss_pred HHHHHHhcCCCCCCEEEEeCCCccHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCCc
Confidence 346777788888999999999999999999987 78999999999999999999998888678999999998876 6678
Q ss_pred CCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEee
Q 048309 137 YDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 137 fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
||+|++. . .+...+++++.++|+|||.+++...
T Consensus 159 ~D~v~~~-----~--~~~~~~l~~~~~~L~~gG~l~~~~~ 191 (248)
T 2yvl_A 159 FHAAFVD-----V--REPWHYLEKVHKSLMEGAPVGFLLP 191 (248)
T ss_dssp BSEEEEC-----S--SCGGGGHHHHHHHBCTTCEEEEEES
T ss_pred ccEEEEC-----C--cCHHHHHHHHHHHcCCCCEEEEEeC
Confidence 9999984 2 3446788999999999999998653
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=8.6e-15 Score=125.86 Aligned_cols=103 Identities=17% Similarity=0.213 Sum_probs=88.2
Q ss_pred CCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCEEEEccch
Q 048309 67 VSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMM 146 (288)
Q Consensus 67 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~~~~~l 146 (288)
..++.+|||+|||+|.++..+++. +.+|+|+|+++.+++.++++++.+++. +++..+|+.+..+.++||+|+++...
T Consensus 118 ~~~~~~VLDiGcG~G~l~~~la~~-g~~v~gvDi~~~~v~~a~~n~~~~~~~--v~~~~~d~~~~~~~~~fD~Vv~n~~~ 194 (254)
T 2nxc_A 118 LRPGDKVLDLGTGSGVLAIAAEKL-GGKALGVDIDPMVLPQAEANAKRNGVR--PRFLEGSLEAALPFGPFDLLVANLYA 194 (254)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHT-TCEEEEEESCGGGHHHHHHHHHHTTCC--CEEEESCHHHHGGGCCEEEEEEECCH
T ss_pred cCCCCEEEEecCCCcHHHHHHHHh-CCeEEEEECCHHHHHHHHHHHHHcCCc--EEEEECChhhcCcCCCCCEEEECCcH
Confidence 457889999999999999999886 559999999999999999999988874 89999998763235789999998665
Q ss_pred hhhCHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 147 EAVGHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 147 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
+++ ..++.++.++|+|||.++++.+.
T Consensus 195 ~~~-----~~~l~~~~~~LkpgG~lils~~~ 220 (254)
T 2nxc_A 195 ELH-----AALAPRYREALVPGGRALLTGIL 220 (254)
T ss_dssp HHH-----HHHHHHHHHHEEEEEEEEEEEEE
T ss_pred HHH-----HHHHHHHHHHcCCCCEEEEEeec
Confidence 544 78899999999999999996543
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.57 E-value=5.1e-15 Score=125.25 Aligned_cols=105 Identities=18% Similarity=0.165 Sum_probs=87.1
Q ss_pred HHHcCCCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCC----CCCCCC
Q 048309 62 IEKARVSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQ----LPKAKK 136 (288)
Q Consensus 62 ~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~----~~~~~~ 136 (288)
++.+.+.++.+|||+|||+|..+..+++. +..+|+|+|+|+.+++.++++++.. .++.++.+|+.+ .+..++
T Consensus 67 l~~~~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~~~ 143 (230)
T 1fbn_A 67 LKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER---ENIIPILGDANKPQEYANIVEK 143 (230)
T ss_dssp CCCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC---TTEEEEECCTTCGGGGTTTSCC
T ss_pred ccccCCCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcC---CCeEEEECCCCCcccccccCcc
Confidence 55556778899999999999999999987 4479999999999999999887654 589999999988 663478
Q ss_pred CCEEEEccchhhhC-HhhHHHHHHHHhcccccCcEEEEE
Q 048309 137 YDRIISCEMMEAVG-HEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 137 fD~I~~~~~l~~~~-~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
||+|+. +++ +.....+++++.++|+|||.+++.
T Consensus 144 ~D~v~~-----~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 177 (230)
T 1fbn_A 144 VDVIYE-----DVAQPNQAEILIKNAKWFLKKGGYGMIA 177 (230)
T ss_dssp EEEEEE-----CCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEEEE-----ecCChhHHHHHHHHHHHhCCCCcEEEEE
Confidence 999993 331 134477899999999999999996
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.1e-14 Score=123.77 Aligned_cols=117 Identities=20% Similarity=0.147 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc-c-CCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccC
Q 048309 52 VAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-T-GCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYR 129 (288)
Q Consensus 52 ~a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~-~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~ 129 (288)
......+..++.. .++.+|||||||+|..+..+++. + +.+|+++|+++.+++.|+++++..++..+++++++|+.
T Consensus 46 ~~~~~~l~~l~~~---~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~ 122 (239)
T 2hnk_A 46 PEEGQFLNILTKI---SGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSAL 122 (239)
T ss_dssp HHHHHHHHHHHHH---HTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHH
T ss_pred HHHHHHHHHHHHh---hCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHH
Confidence 3444444444433 36789999999999999999987 3 67999999999999999999999888667999999986
Q ss_pred CC-C-C---------------C-CCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEee
Q 048309 130 QL-P-K---------------A-KKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 130 ~~-~-~---------------~-~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
+. + . + ++||+|++..... ....+++++.++|+|||++++.+.
T Consensus 123 ~~~~~~~~~~~~~~~~~~f~~~~~~fD~I~~~~~~~-----~~~~~l~~~~~~L~pgG~lv~~~~ 182 (239)
T 2hnk_A 123 ETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDADKE-----NYPNYYPLILKLLKPGGLLIADNV 182 (239)
T ss_dssp HHHHHHHHCSSCCGGGTTTCCSTTCEEEEEECSCGG-----GHHHHHHHHHHHEEEEEEEEEECS
T ss_pred HHHHHHHhhcccccccccccCCCCCcCEEEEeCCHH-----HHHHHHHHHHHHcCCCeEEEEEcc
Confidence 53 2 1 2 7899999986543 456889999999999999998654
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.57 E-value=1.3e-14 Score=129.46 Aligned_cols=107 Identities=18% Similarity=0.226 Sum_probs=90.2
Q ss_pred CCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCC-ceEEEEcccCCCC-C----CCCCCEEE
Q 048309 68 SKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQD-HIRLYLCDYRQLP-K----AKKYDRII 141 (288)
Q Consensus 68 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~-~v~~~~~d~~~~~-~----~~~fD~I~ 141 (288)
.++.+|||+|||+|.++..+++. +.+|+++|+|+.+++.|+++++.+++.. +++++++|+.++. . .++||+|+
T Consensus 152 ~~~~~VLDlgcGtG~~sl~la~~-ga~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii 230 (332)
T 2igt_A 152 DRPLKVLNLFGYTGVASLVAAAA-GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIIL 230 (332)
T ss_dssp SSCCEEEEETCTTCHHHHHHHHT-TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEE
T ss_pred CCCCcEEEcccccCHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEE
Confidence 46789999999999999999986 6699999999999999999999998854 4999999998754 1 57899999
Q ss_pred Eccch----------hhhCHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 142 SCEMM----------EAVGHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 142 ~~~~l----------~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
+.... ++. .++..+++++.++|+|||.+++....
T Consensus 231 ~dPP~~~~~~~~~~~~~~--~~~~~ll~~~~~~LkpgG~lli~~~~ 274 (332)
T 2igt_A 231 TDPPKFGRGTHGEVWQLF--DHLPLMLDICREILSPKALGLVLTAY 274 (332)
T ss_dssp ECCCSEEECTTCCEEEHH--HHHHHHHHHHHHTBCTTCCEEEEEEC
T ss_pred ECCccccCCchHHHHHHH--HHHHHHHHHHHHhcCcCcEEEEEECC
Confidence 96432 233 56789999999999999998876544
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=2.3e-14 Score=120.53 Aligned_cols=112 Identities=19% Similarity=0.195 Sum_probs=92.1
Q ss_pred HHHHHHcC--CCCCCEEEEECCcccHHHHHHHHcc--CCEEEEEcCCHHHHHHHHHHHHHcCC----CCceEEEEcccCC
Q 048309 59 SLLIEKAR--VSKEHEVLEIGCGWGTFAIEVVRQT--GCNYTGITLSAEQMKYAEMKVNEAGL----QDHIRLYLCDYRQ 130 (288)
Q Consensus 59 ~~l~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~giD~s~~~~~~a~~~~~~~g~----~~~v~~~~~d~~~ 130 (288)
..+++.+. +.++.+|||+|||+|..+..+++.. ..+|+++|+++.+++.+++++...++ ..+++++++|+..
T Consensus 65 ~~~l~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~ 144 (226)
T 1i1n_A 65 AYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRM 144 (226)
T ss_dssp HHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGG
T ss_pred HHHHHHHHhhCCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCccc
Confidence 34555554 6788999999999999999998863 26999999999999999999887653 3579999999987
Q ss_pred CC-CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecC
Q 048309 131 LP-KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSST 178 (288)
Q Consensus 131 ~~-~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 178 (288)
.. ..++||+|++...++++. +++.++|||||++++.....
T Consensus 145 ~~~~~~~fD~i~~~~~~~~~~--------~~~~~~LkpgG~lv~~~~~~ 185 (226)
T 1i1n_A 145 GYAEEAPYDAIHVGAAAPVVP--------QALIDQLKPGGRLILPVGPA 185 (226)
T ss_dssp CCGGGCCEEEEEECSBBSSCC--------HHHHHTEEEEEEEEEEESCT
T ss_pred CcccCCCcCEEEECCchHHHH--------HHHHHhcCCCcEEEEEEecC
Confidence 65 467899999998887763 46789999999999976543
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.4e-14 Score=124.09 Aligned_cols=109 Identities=17% Similarity=0.192 Sum_probs=94.4
Q ss_pred HHHHHHcCCCCCCEEEEECCcccHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHc-CCCCceEEEEcccCCCC-CC
Q 048309 59 SLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQMKYAEMKVNEA-GLQDHIRLYLCDYRQLP-KA 134 (288)
Q Consensus 59 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~giD~s~~~~~~a~~~~~~~-g~~~~v~~~~~d~~~~~-~~ 134 (288)
..++..+...++.+|||+|||+|.++..+++. ++.+|+++|+++.+++.++++++.. |. .++++..+|+.+.+ ++
T Consensus 86 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~-~~v~~~~~d~~~~~~~~ 164 (258)
T 2pwy_A 86 SAMVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQV-ENVRFHLGKLEEAELEE 164 (258)
T ss_dssp HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCC-CCEEEEESCGGGCCCCT
T ss_pred HHHHHHcCCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCC-CCEEEEECchhhcCCCC
Confidence 56777788889999999999999999999987 3679999999999999999999887 73 68999999999885 56
Q ss_pred CCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 135 KKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 135 ~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
++||+|++. . .+...+++++.++|+|||.+++.+
T Consensus 165 ~~~D~v~~~-----~--~~~~~~l~~~~~~L~~gG~l~~~~ 198 (258)
T 2pwy_A 165 AAYDGVALD-----L--MEPWKVLEKAALALKPDRFLVAYL 198 (258)
T ss_dssp TCEEEEEEE-----S--SCGGGGHHHHHHHEEEEEEEEEEE
T ss_pred CCcCEEEEC-----C--cCHHHHHHHHHHhCCCCCEEEEEe
Confidence 789999983 3 344678999999999999999855
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.6e-14 Score=122.31 Aligned_cols=108 Identities=14% Similarity=0.086 Sum_probs=88.5
Q ss_pred HHHcCCCCCCEEEEECCcccHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCC---C-CCC
Q 048309 62 IEKARVSKEHEVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQL---P-KAK 135 (288)
Q Consensus 62 ~~~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~---~-~~~ 135 (288)
++.+.+.++.+|||+|||+|.++..+++. +..+|+|+|+|+.+++.+.++++.. .+++++++|+.+. + ..+
T Consensus 70 l~~~~~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~---~~v~~~~~d~~~~~~~~~~~~ 146 (233)
T 2ipx_A 70 VDQIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR---TNIIPVIEDARHPHKYRMLIA 146 (233)
T ss_dssp CSCCCCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC---TTEEEECSCTTCGGGGGGGCC
T ss_pred HheecCCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc---CCeEEEEcccCChhhhcccCC
Confidence 34556778899999999999999999987 3479999999999988888887765 4799999999873 3 467
Q ss_pred CCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEee
Q 048309 136 KYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 136 ~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
+||+|++... .+.....++.++.++|||||.+++...
T Consensus 147 ~~D~V~~~~~----~~~~~~~~~~~~~~~LkpgG~l~i~~~ 183 (233)
T 2ipx_A 147 MVDVIFADVA----QPDQTRIVALNAHTFLRNGGHFVISIK 183 (233)
T ss_dssp CEEEEEECCC----CTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cEEEEEEcCC----CccHHHHHHHHHHHHcCCCeEEEEEEc
Confidence 8999999655 224456678899999999999999543
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.56 E-value=1.6e-14 Score=125.44 Aligned_cols=113 Identities=19% Similarity=0.280 Sum_probs=95.8
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHc-C-CCCceEEEEcccCCCC
Q 048309 57 KHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQMKYAEMKVNEA-G-LQDHIRLYLCDYRQLP 132 (288)
Q Consensus 57 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~giD~s~~~~~~a~~~~~~~-g-~~~~v~~~~~d~~~~~ 132 (288)
....++..+.+.++.+|||+|||+|.++..+++. ++.+|+++|+++.+++.|+++++.. | +..+++++++|+.+.+
T Consensus 87 ~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~ 166 (280)
T 1i9g_A 87 DAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSE 166 (280)
T ss_dssp HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCC
T ss_pred HHHHHHHHcCCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcC
Confidence 3456777888889999999999999999999985 4679999999999999999999877 5 4468999999999876
Q ss_pred -CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEee
Q 048309 133 -KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 133 -~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
++++||+|++. . .++..+++++.++|+|||.+++.+.
T Consensus 167 ~~~~~~D~v~~~-----~--~~~~~~l~~~~~~L~pgG~l~~~~~ 204 (280)
T 1i9g_A 167 LPDGSVDRAVLD-----M--LAPWEVLDAVSRLLVAGGVLMVYVA 204 (280)
T ss_dssp CCTTCEEEEEEE-----S--SCGGGGHHHHHHHEEEEEEEEEEES
T ss_pred CCCCceeEEEEC-----C--cCHHHHHHHHHHhCCCCCEEEEEeC
Confidence 56789999984 2 2445789999999999999999653
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.56 E-value=4.8e-14 Score=126.89 Aligned_cols=118 Identities=23% Similarity=0.245 Sum_probs=98.4
Q ss_pred HHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CC
Q 048309 58 HSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KA 134 (288)
Q Consensus 58 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~ 134 (288)
...++..+...++.+|||+|||+|.+++.++.. +..+++|+|+++.+++.|+++++..|++ ++++.++|+.+++ +.
T Consensus 192 a~~l~~~~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~-~i~~~~~D~~~~~~~~ 270 (354)
T 3tma_A 192 AQALLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLS-WIRFLRADARHLPRFF 270 (354)
T ss_dssp HHHHHHHTTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCT-TCEEEECCGGGGGGTC
T ss_pred HHHHHHHhCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCC-ceEEEeCChhhCcccc
Confidence 345666777788899999999999999999986 3479999999999999999999999986 8999999999987 56
Q ss_pred CCCCEEEEccchhhh-C-----HhhHHHHHHHHhcccccCcEEEEEee
Q 048309 135 KKYDRIISCEMMEAV-G-----HEYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 135 ~~fD~I~~~~~l~~~-~-----~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
..||+|+++..+... . ...+..+++++.++|+|||.+++.+.
T Consensus 271 ~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~ 318 (354)
T 3tma_A 271 PEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTL 318 (354)
T ss_dssp CCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEES
T ss_pred CCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 779999997654321 0 12347899999999999999999654
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.56 E-value=3.8e-14 Score=123.61 Aligned_cols=117 Identities=12% Similarity=0.198 Sum_probs=90.8
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcC-CHHHHHHHHHHH-----HHcCCC----CceEEEE
Q 048309 56 RKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITL-SAEQMKYAEMKV-----NEAGLQ----DHIRLYL 125 (288)
Q Consensus 56 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~-s~~~~~~a~~~~-----~~~g~~----~~v~~~~ 125 (288)
.....+.......++.+|||+|||+|.++..+++....+|+|+|+ |+.+++.+++++ +..++. +++++..
T Consensus 66 ~l~~~l~~~~~~~~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~ 145 (281)
T 3bzb_A 66 ALADTLCWQPELIAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVP 145 (281)
T ss_dssp HHHHHHHHCGGGTTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEE
T ss_pred HHHHHHHhcchhcCCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEE
Confidence 334445554444578899999999999999988863339999999 899999999999 555553 4788887
Q ss_pred cccCCCC-------CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccc---c--CcEEEEE
Q 048309 126 CDYRQLP-------KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLA---K--DGLLVLQ 174 (288)
Q Consensus 126 ~d~~~~~-------~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~Lk---p--gG~l~~~ 174 (288)
.|..+.. ..++||+|++..+++|. .+...+++.+.++|+ | ||.+++.
T Consensus 146 ~~~~~~~~~~~~~~~~~~fD~Ii~~dvl~~~--~~~~~ll~~l~~~Lk~~~p~~gG~l~v~ 204 (281)
T 3bzb_A 146 YRWGDSPDSLQRCTGLQRFQVVLLADLLSFH--QAHDALLRSVKMLLALPANDPTAVALVT 204 (281)
T ss_dssp CCTTSCTHHHHHHHSCSSBSEEEEESCCSCG--GGHHHHHHHHHHHBCCTTTCTTCEEEEE
T ss_pred ecCCCccHHHHhhccCCCCCEEEEeCcccCh--HHHHHHHHHHHHHhcccCCCCCCEEEEE
Confidence 7765532 25789999999999987 788999999999999 9 9988774
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.56 E-value=3.2e-14 Score=119.82 Aligned_cols=115 Identities=18% Similarity=0.156 Sum_probs=95.0
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CC
Q 048309 57 KHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KA 134 (288)
Q Consensus 57 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~ 134 (288)
.+..+.+.+ +++.+|+|||||+|.+++.+++. +..+|+++|+++.+++.|+++++.+|+.++++++++|..+.. +.
T Consensus 11 RL~~i~~~v--~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~ 88 (230)
T 3lec_A 11 RLQKVANYV--PKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEA 88 (230)
T ss_dssp HHHHHHTTS--CTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGG
T ss_pred HHHHHHHhC--CCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccc
Confidence 344444443 46789999999999999999987 345899999999999999999999999888999999998866 33
Q ss_pred CCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 135 KKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 135 ~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
.+||+|+..++-. +....++....+.|+++|.|+++...
T Consensus 89 ~~~D~IviaGmGg----~lI~~IL~~~~~~l~~~~~lIlqp~~ 127 (230)
T 3lec_A 89 DNIDTITICGMGG----RLIADILNNDIDKLQHVKTLVLQPNN 127 (230)
T ss_dssp GCCCEEEEEEECH----HHHHHHHHHTGGGGTTCCEEEEEESS
T ss_pred cccCEEEEeCCch----HHHHHHHHHHHHHhCcCCEEEEECCC
Confidence 4799998765433 45688899999999999999997654
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=3.4e-14 Score=119.38 Aligned_cols=113 Identities=19% Similarity=0.189 Sum_probs=93.0
Q ss_pred HHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCC-CCCCC
Q 048309 58 HSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQ-LPKAK 135 (288)
Q Consensus 58 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~-~~~~~ 135 (288)
+..+.+.+ +++.+|+|||||+|.+++.+++. +..+|+++|+++.+++.|+++++.+|+.++++++.+|..+ +++..
T Consensus 6 L~~l~~~v--~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~~~ 83 (225)
T 3kr9_A 6 LELVASFV--SQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEETD 83 (225)
T ss_dssp HHHHHTTS--CTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGG
T ss_pred HHHHHHhC--CCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcccCc
Confidence 33444433 46789999999999999999987 4568999999999999999999999998789999999965 44333
Q ss_pred CCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEee
Q 048309 136 KYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 136 ~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
+||+|+..++ +......++..+.+.|+++|+++++..
T Consensus 84 ~~D~IviaG~----Gg~~i~~Il~~~~~~L~~~~~lVlq~~ 120 (225)
T 3kr9_A 84 QVSVITIAGM----GGRLIARILEEGLGKLANVERLILQPN 120 (225)
T ss_dssp CCCEEEEEEE----CHHHHHHHHHHTGGGCTTCCEEEEEES
T ss_pred CCCEEEEcCC----ChHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 7999987654 324468899999999999999999765
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=3e-14 Score=124.50 Aligned_cols=118 Identities=15% Similarity=0.185 Sum_probs=92.1
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCC
Q 048309 57 KHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKK 136 (288)
Q Consensus 57 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~ 136 (288)
.+..+++.+...++.+|||+|||+|.++..+++.++.+|+|+|+|+.+++.|+++++..++..+++++++|+.+... ++
T Consensus 111 lv~~~l~~~~~~~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~~-~~ 189 (284)
T 1nv8_A 111 LVELALELIRKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFK-EK 189 (284)
T ss_dssp HHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGG-GG
T ss_pred HHHHHHHHhcccCCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhcc-cc
Confidence 34445554433366799999999999999998865679999999999999999999999987679999999987433 57
Q ss_pred C---CEEEEccchh-----------hhCH------hhHHHHHHHHh-cccccCcEEEEEe
Q 048309 137 Y---DRIISCEMME-----------AVGH------EYMEEYFGCCE-SLLAKDGLLVLQF 175 (288)
Q Consensus 137 f---D~I~~~~~l~-----------~~~~------~~~~~~l~~~~-~~LkpgG~l~~~~ 175 (288)
| |+|+++.... |-+. .+...+++++. +.|+|||.+++..
T Consensus 190 f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~ 249 (284)
T 1nv8_A 190 FASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEI 249 (284)
T ss_dssp TTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEEC
T ss_pred cCCCCEEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEE
Confidence 8 9999973322 2211 11237899999 9999999999853
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.55 E-value=8.3e-15 Score=125.62 Aligned_cols=119 Identities=18% Similarity=0.158 Sum_probs=86.4
Q ss_pred HHHHHHHHHcCC--CCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCC-
Q 048309 56 RKHSLLIEKARV--SKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQL- 131 (288)
Q Consensus 56 ~~~~~l~~~~~~--~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~- 131 (288)
..+..+++.+.. .++.+|||+|||+|.++..+++. ++.+|+|+|+|+.+++.|+++++..++..+++++++|+.+.
T Consensus 50 ~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 129 (254)
T 2h00_A 50 HWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLL 129 (254)
T ss_dssp HHHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSS
T ss_pred HHHHHHHhhccccCCCCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhh
Confidence 344444443332 25779999999999999999886 57899999999999999999999999876799999997652
Q ss_pred --C-C---CCCCCEEEEccchhhhCH-------------hhHHHHHHHHhcccccCcEEEEE
Q 048309 132 --P-K---AKKYDRIISCEMMEAVGH-------------EYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 132 --~-~---~~~fD~I~~~~~l~~~~~-------------~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
+ . +++||+|+++..+++... .....++.++.++|||||.+.+.
T Consensus 130 ~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~ 191 (254)
T 2h00_A 130 MDALKEESEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFV 191 (254)
T ss_dssp TTTSTTCCSCCBSEEEECCCCC-------------------------CTTTTHHHHTHHHHH
T ss_pred hhhhhcccCCcccEEEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEE
Confidence 2 2 268999999876654420 11235678899999999988763
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.55 E-value=2.4e-14 Score=126.89 Aligned_cols=117 Identities=9% Similarity=0.091 Sum_probs=95.0
Q ss_pred HHHHcCCCCCCEEEEECCcccHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CCCCC
Q 048309 61 LIEKARVSKEHEVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAKKY 137 (288)
Q Consensus 61 l~~~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~~f 137 (288)
+...+.+.++.+|||+|||+|..+..+++. ...+|+++|+++.+++.++++++..|++ +++++++|+.+++ ..++|
T Consensus 110 ~~~~l~~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~-~v~~~~~D~~~~~~~~~~f 188 (315)
T 1ixk_A 110 PPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVL-NVILFHSSSLHIGELNVEF 188 (315)
T ss_dssp HHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCC-SEEEESSCGGGGGGGCCCE
T ss_pred HHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCC-eEEEEECChhhcccccccC
Confidence 345567788999999999999999999986 2479999999999999999999999984 7999999999876 46789
Q ss_pred CEEEEccc------hhhhC-------H-------hhHHHHHHHHhcccccCcEEEEEeecC
Q 048309 138 DRIISCEM------MEAVG-------H-------EYMEEYFGCCESLLAKDGLLVLQFSST 178 (288)
Q Consensus 138 D~I~~~~~------l~~~~-------~-------~~~~~~l~~~~~~LkpgG~l~~~~~~~ 178 (288)
|+|++... +.+.+ . .....+++++.++|||||++++++.+.
T Consensus 189 D~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~ 249 (315)
T 1ixk_A 189 DKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSL 249 (315)
T ss_dssp EEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred CEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCC
Confidence 99998533 22211 0 112588999999999999999987654
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.55 E-value=3.9e-14 Score=120.22 Aligned_cols=114 Identities=17% Similarity=0.163 Sum_probs=94.0
Q ss_pred HHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCC-CC
Q 048309 58 HSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPK-AK 135 (288)
Q Consensus 58 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~-~~ 135 (288)
+..+.+.+ +++.+|||||||+|.+++.+++. +..+|+++|+++.+++.|+++++.+|+.++++++++|..+... ..
T Consensus 12 L~~i~~~v--~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~ 89 (244)
T 3gnl_A 12 LEKVASYI--TKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKD 89 (244)
T ss_dssp HHHHHTTC--CSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGG
T ss_pred HHHHHHhC--CCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccc
Confidence 34444443 46789999999999999999987 3458999999999999999999999998789999999988663 34
Q ss_pred CCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 136 KYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 136 ~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
+||+|++.++ +.+....++....+.|+++|.|+++...
T Consensus 90 ~~D~Iviagm----Gg~lI~~IL~~~~~~L~~~~~lIlq~~~ 127 (244)
T 3gnl_A 90 AIDTIVIAGM----GGTLIRTILEEGAAKLAGVTKLILQPNI 127 (244)
T ss_dssp CCCEEEEEEE----CHHHHHHHHHHTGGGGTTCCEEEEEESS
T ss_pred cccEEEEeCC----chHHHHHHHHHHHHHhCCCCEEEEEcCC
Confidence 6999987544 3345688899999999999999997653
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=99.54 E-value=1.4e-14 Score=125.87 Aligned_cols=116 Identities=16% Similarity=0.149 Sum_probs=94.8
Q ss_pred HHHcCCCCCCEEEEECCcccHHHHHHHHc-cC-CEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCC-----C
Q 048309 62 IEKARVSKEHEVLEIGCGWGTFAIEVVRQ-TG-CNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPK-----A 134 (288)
Q Consensus 62 ~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~-~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~-----~ 134 (288)
...+.+.++.+|||+|||+|..+..+++. .+ .+|+++|+++.+++.++++++..|++ +++++++|+.+++. .
T Consensus 76 ~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~-~v~~~~~D~~~~~~~~~~~~ 154 (274)
T 3ajd_A 76 PIVLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVL-NTIIINADMRKYKDYLLKNE 154 (274)
T ss_dssp HHHHCCCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCHHHHHHHHHHTT
T ss_pred HHHhCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCC-cEEEEeCChHhcchhhhhcc
Confidence 34456778999999999999999999985 34 79999999999999999999999985 89999999987652 6
Q ss_pred CCCCEEEEccchhhhC----------------HhhHHHHHHHHhcccccCcEEEEEeecC
Q 048309 135 KKYDRIISCEMMEAVG----------------HEYMEEYFGCCESLLAKDGLLVLQFSST 178 (288)
Q Consensus 135 ~~fD~I~~~~~l~~~~----------------~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 178 (288)
++||+|++...+...+ ......+++++.++|||||++++++.+.
T Consensus 155 ~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~ 214 (274)
T 3ajd_A 155 IFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSM 214 (274)
T ss_dssp CCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred ccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCC
Confidence 7899999974332210 0235789999999999999999987654
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.54 E-value=2.5e-14 Score=124.34 Aligned_cols=110 Identities=17% Similarity=0.200 Sum_probs=95.1
Q ss_pred HHHHHHcCCCCCCEEEEECCcccHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCC
Q 048309 59 SLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKK 136 (288)
Q Consensus 59 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~ 136 (288)
..++..+.+.++.+|||+|||+|.++..+++. ++.+|+++|+++.+++.|+++++..++.++++++.+|+.+..++++
T Consensus 102 ~~i~~~~~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 181 (277)
T 1o54_A 102 SFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDEKD 181 (277)
T ss_dssp HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSCCS
T ss_pred HHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHcccCCc
Confidence 46777788889999999999999999999886 3679999999999999999999988876689999999987654568
Q ss_pred CCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 137 YDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 137 fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
||+|++.. .+...+++++.++|+|||.+++.+
T Consensus 182 ~D~V~~~~-------~~~~~~l~~~~~~L~pgG~l~~~~ 213 (277)
T 1o54_A 182 VDALFLDV-------PDPWNYIDKCWEALKGGGRFATVC 213 (277)
T ss_dssp EEEEEECC-------SCGGGTHHHHHHHEEEEEEEEEEE
T ss_pred cCEEEECC-------cCHHHHHHHHHHHcCCCCEEEEEe
Confidence 99999842 344678999999999999999865
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.54 E-value=2.9e-14 Score=120.07 Aligned_cols=106 Identities=20% Similarity=0.143 Sum_probs=86.5
Q ss_pred HHHcCCCCCCEEEEECCcccHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCC----CCCC
Q 048309 62 IEKARVSKEHEVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQL----PKAK 135 (288)
Q Consensus 62 ~~~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~----~~~~ 135 (288)
++.+.+.++.+|||+|||+|.++..+++. +..+|+|+|+|+.+++.++++++.. .+++++++|+.+. +..+
T Consensus 66 l~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~---~~v~~~~~d~~~~~~~~~~~~ 142 (227)
T 1g8a_A 66 LKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER---RNIVPILGDATKPEEYRALVP 142 (227)
T ss_dssp CCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC---TTEEEEECCTTCGGGGTTTCC
T ss_pred HHhcCCCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc---CCCEEEEccCCCcchhhcccC
Confidence 34444778899999999999999999986 2479999999999999999887654 4799999999873 2346
Q ss_pred CCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 136 KYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 136 ~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
+||+|++... .+.....+++++.++|||||.+++.
T Consensus 143 ~~D~v~~~~~----~~~~~~~~l~~~~~~LkpgG~l~~~ 177 (227)
T 1g8a_A 143 KVDVIFEDVA----QPTQAKILIDNAEVYLKRGGYGMIA 177 (227)
T ss_dssp CEEEEEECCC----STTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CceEEEECCC----CHhHHHHHHHHHHHhcCCCCEEEEE
Confidence 8999998755 1134456699999999999999986
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.54 E-value=3.1e-14 Score=119.83 Aligned_cols=112 Identities=13% Similarity=0.230 Sum_probs=91.9
Q ss_pred HHHHHHc--CCCCCCEEEEECCcccHHHHHHHHccC------CEEEEEcCCHHHHHHHHHHHHHcCC----CCceEEEEc
Q 048309 59 SLLIEKA--RVSKEHEVLEIGCGWGTFAIEVVRQTG------CNYTGITLSAEQMKYAEMKVNEAGL----QDHIRLYLC 126 (288)
Q Consensus 59 ~~l~~~~--~~~~~~~vLDiGcG~G~~~~~la~~~~------~~v~giD~s~~~~~~a~~~~~~~g~----~~~v~~~~~ 126 (288)
..+++.+ .+.++.+|||||||+|.++..+++..+ .+|+++|+++.+++.|+++++..++ ..+++++.+
T Consensus 68 ~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~ 147 (227)
T 2pbf_A 68 ALSLKRLINVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHK 147 (227)
T ss_dssp HHHHHHHTTTSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEEC
T ss_pred HHHHHHHHhhCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEEC
Confidence 3445555 467889999999999999999998633 5999999999999999999988773 258999999
Q ss_pred ccCCCC-----CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecC
Q 048309 127 DYRQLP-----KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSST 178 (288)
Q Consensus 127 d~~~~~-----~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 178 (288)
|+.+.. ..++||+|++...++++ ++++.+.|+|||++++.....
T Consensus 148 d~~~~~~~~~~~~~~fD~I~~~~~~~~~--------~~~~~~~LkpgG~lv~~~~~~ 196 (227)
T 2pbf_A 148 NIYQVNEEEKKELGLFDAIHVGASASEL--------PEILVDLLAENGKLIIPIEED 196 (227)
T ss_dssp CGGGCCHHHHHHHCCEEEEEECSBBSSC--------CHHHHHHEEEEEEEEEEEEET
T ss_pred ChHhcccccCccCCCcCEEEECCchHHH--------HHHHHHhcCCCcEEEEEEccC
Confidence 998742 34789999999888876 256789999999999977653
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.6e-14 Score=124.07 Aligned_cols=106 Identities=15% Similarity=0.185 Sum_probs=91.4
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCEEEEcc
Q 048309 66 RVSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCE 144 (288)
Q Consensus 66 ~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~~~~ 144 (288)
.+.++.+|||+|||+|.++..+++. ...+|+|+|+++.+++.|+++++.++++ ++.++++|+.+.+..++||+|++..
T Consensus 116 ~~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~-~~~~~~~d~~~~~~~~~~D~Vi~d~ 194 (272)
T 3a27_A 116 ISNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLN-NVIPILADNRDVELKDVADRVIMGY 194 (272)
T ss_dssp SCCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCS-SEEEEESCGGGCCCTTCEEEEEECC
T ss_pred hcCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEECChHHcCccCCceEEEECC
Confidence 3567889999999999999999987 4569999999999999999999999984 7999999999874346899999986
Q ss_pred chhhhCHhhHHHHHHHHhcccccCcEEEEEeecC
Q 048309 145 MMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSST 178 (288)
Q Consensus 145 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 178 (288)
.. ....++.++.+.|+|||.+++.+...
T Consensus 195 p~------~~~~~l~~~~~~LkpgG~l~~s~~~~ 222 (272)
T 3a27_A 195 VH------KTHKFLDKTFEFLKDRGVIHYHETVA 222 (272)
T ss_dssp CS------SGGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred cc------cHHHHHHHHHHHcCCCCEEEEEEcCc
Confidence 54 34568888899999999999987654
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.53 E-value=3.7e-14 Score=121.19 Aligned_cols=107 Identities=16% Similarity=0.328 Sum_probs=84.8
Q ss_pred CCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHc--------CCCCceEEEEcccCC-CC---CC
Q 048309 68 SKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEA--------GLQDHIRLYLCDYRQ-LP---KA 134 (288)
Q Consensus 68 ~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~--------g~~~~v~~~~~d~~~-~~---~~ 134 (288)
.++.+|||||||+|.++..+++. +..+|+|+|+|+.+++.++++++.. ++ .+++++++|+.+ ++ ..
T Consensus 48 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~-~nv~~~~~D~~~~l~~~~~~ 126 (246)
T 2vdv_E 48 TKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGF-QNINVLRGNAMKFLPNFFEK 126 (246)
T ss_dssp SCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTT-TTEEEEECCTTSCGGGTSCT
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCC-CcEEEEeccHHHHHHHhccc
Confidence 46789999999999999999987 5679999999999999999998776 66 489999999987 33 35
Q ss_pred CCCCEEEEccchhhhCHh------hHHHHHHHHhcccccCcEEEEEe
Q 048309 135 KKYDRIISCEMMEAVGHE------YMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 135 ~~fD~I~~~~~l~~~~~~------~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
+++|.|+....-.+.... ....+++++.++|+|||.+++.+
T Consensus 127 ~~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~t 173 (246)
T 2vdv_E 127 GQLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTIT 173 (246)
T ss_dssp TCEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEe
Confidence 789999865432221000 01589999999999999999843
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.53 E-value=5.6e-14 Score=118.83 Aligned_cols=104 Identities=16% Similarity=0.122 Sum_probs=81.5
Q ss_pred cCCCCCCEEEEECCcccHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC----CCCCCC
Q 048309 65 ARVSKEHEVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP----KAKKYD 138 (288)
Q Consensus 65 ~~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~----~~~~fD 138 (288)
+.++++.+|||+|||+|..+..+++. +..+|+|+|+++.+++...+..+.. .|+.++++|+.... ..++||
T Consensus 72 ~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r---~nv~~i~~Da~~~~~~~~~~~~~D 148 (232)
T 3id6_C 72 NPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR---PNIFPLLADARFPQSYKSVVENVD 148 (232)
T ss_dssp CSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC---TTEEEEECCTTCGGGTTTTCCCEE
T ss_pred cCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCeEEEEcccccchhhhccccceE
Confidence 44889999999999999999999886 4569999999999986665555443 48999999997643 346899
Q ss_pred EEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 139 RIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 139 ~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
+|++..+.. .....+...+.+.|||||.+++..
T Consensus 149 ~I~~d~a~~----~~~~il~~~~~~~LkpGG~lvisi 181 (232)
T 3id6_C 149 VLYVDIAQP----DQTDIAIYNAKFFLKVNGDMLLVI 181 (232)
T ss_dssp EEEECCCCT----THHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEecCCCh----hHHHHHHHHHHHhCCCCeEEEEEE
Confidence 999986541 333445566677999999999963
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.8e-14 Score=120.91 Aligned_cols=118 Identities=22% Similarity=0.216 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc-c-CCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccC
Q 048309 52 VAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-T-GCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYR 129 (288)
Q Consensus 52 ~a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~-~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~ 129 (288)
..+.+.+..++.. .++.+|||||||+|..+..+++. + +.+|+++|+++.+++.|+++++..++.++++++++|+.
T Consensus 58 ~~~~~~l~~l~~~---~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~ 134 (232)
T 3cbg_A 58 PEQAQFLGLLISL---TGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPAL 134 (232)
T ss_dssp HHHHHHHHHHHHH---HTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHH
T ss_pred HHHHHHHHHHHHh---cCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHH
Confidence 3444555555543 25679999999999999999987 3 57999999999999999999998888768999999986
Q ss_pred CC-C----CC--CCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 130 QL-P----KA--KKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 130 ~~-~----~~--~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
+. + .+ ++||+|++.... .+...+++++.++|+|||++++.+..
T Consensus 135 ~~l~~l~~~~~~~~fD~V~~d~~~-----~~~~~~l~~~~~~LkpgG~lv~~~~~ 184 (232)
T 3cbg_A 135 ATLEQLTQGKPLPEFDLIFIDADK-----RNYPRYYEIGLNLLRRGGLMVIDNVL 184 (232)
T ss_dssp HHHHHHHTSSSCCCEEEEEECSCG-----GGHHHHHHHHHHTEEEEEEEEEECTT
T ss_pred HHHHHHHhcCCCCCcCEEEECCCH-----HHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 53 1 12 789999987652 45688999999999999999996644
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.53 E-value=2.7e-14 Score=120.45 Aligned_cols=111 Identities=18% Similarity=0.215 Sum_probs=91.4
Q ss_pred HHHHHHHc--CCCCCCEEEEECCcccHHHHHHHHccC-------CEEEEEcCCHHHHHHHHHHHHHcC-----CCCceEE
Q 048309 58 HSLLIEKA--RVSKEHEVLEIGCGWGTFAIEVVRQTG-------CNYTGITLSAEQMKYAEMKVNEAG-----LQDHIRL 123 (288)
Q Consensus 58 ~~~l~~~~--~~~~~~~vLDiGcG~G~~~~~la~~~~-------~~v~giD~s~~~~~~a~~~~~~~g-----~~~~v~~ 123 (288)
...+++.+ .+.++.+|||||||+|..+..+++..+ .+|+++|+++.+++.+++++...+ . .++++
T Consensus 71 ~~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~-~~v~~ 149 (227)
T 1r18_A 71 HAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDS-GQLLI 149 (227)
T ss_dssp HHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHH-TSEEE
T ss_pred HHHHHHHHHhhCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCC-CceEE
Confidence 34556666 467889999999999999999988622 599999999999999999987755 3 47999
Q ss_pred EEcccCCCC-CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 124 YLCDYRQLP-KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 124 ~~~d~~~~~-~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
+.+|..+.. ..++||+|++...++++. +++.+.|||||++++....
T Consensus 150 ~~~d~~~~~~~~~~fD~I~~~~~~~~~~--------~~~~~~LkpgG~lvi~~~~ 196 (227)
T 1r18_A 150 VEGDGRKGYPPNAPYNAIHVGAAAPDTP--------TELINQLASGGRLIVPVGP 196 (227)
T ss_dssp EESCGGGCCGGGCSEEEEEECSCBSSCC--------HHHHHTEEEEEEEEEEESC
T ss_pred EECCcccCCCcCCCccEEEECCchHHHH--------HHHHHHhcCCCEEEEEEec
Confidence 999998733 337899999999988873 5678999999999997654
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=99.53 E-value=3.2e-14 Score=119.89 Aligned_cols=117 Identities=17% Similarity=0.146 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc-c-CCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCC
Q 048309 53 AQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-T-GCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQ 130 (288)
Q Consensus 53 a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~-~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~ 130 (288)
...+.+..++.. .++.+|||||||+|..+..+++. + +.+|+++|+++.+++.|+++++..++..+++++++|+.+
T Consensus 56 ~~~~~l~~l~~~---~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~ 132 (229)
T 2avd_A 56 EQAQLLANLARL---IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALE 132 (229)
T ss_dssp HHHHHHHHHHHH---TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHH
T ss_pred HHHHHHHHHHHh---cCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHH
Confidence 334444444443 35779999999999999999986 3 679999999999999999999999887789999999866
Q ss_pred CC---C-C---CCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 131 LP---K-A---KKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 131 ~~---~-~---~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
.. . . ++||+|++... ......+++++.++|+|||++++.+..
T Consensus 133 ~~~~~~~~~~~~~~D~v~~d~~-----~~~~~~~l~~~~~~L~pgG~lv~~~~~ 181 (229)
T 2avd_A 133 TLDELLAAGEAGTFDVAVVDAD-----KENCSAYYERCLQLLRPGGILAVLRVL 181 (229)
T ss_dssp HHHHHHHTTCTTCEEEEEECSC-----STTHHHHHHHHHHHEEEEEEEEEECCS
T ss_pred HHHHHHhcCCCCCccEEEECCC-----HHHHHHHHHHHHHHcCCCeEEEEECCC
Confidence 42 1 1 78999999754 245678999999999999999986543
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.9e-14 Score=116.12 Aligned_cols=96 Identities=13% Similarity=0.094 Sum_probs=79.2
Q ss_pred CCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCEEEEccchh
Q 048309 68 SKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMME 147 (288)
Q Consensus 68 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~~~~~l~ 147 (288)
.++.+|||+|||+|.++..+++. + +|+|+|+|+.+++. ..+++++++|+.+...+++||+|+++..++
T Consensus 22 ~~~~~vLD~GcG~G~~~~~l~~~-~-~v~gvD~s~~~~~~----------~~~~~~~~~d~~~~~~~~~fD~i~~n~~~~ 89 (170)
T 3q87_B 22 LEMKIVLDLGTSTGVITEQLRKR-N-TVVSTDLNIRALES----------HRGGNLVRADLLCSINQESVDVVVFNPPYV 89 (170)
T ss_dssp CCSCEEEEETCTTCHHHHHHTTT-S-EEEEEESCHHHHHT----------CSSSCEEECSTTTTBCGGGCSEEEECCCCB
T ss_pred CCCCeEEEeccCccHHHHHHHhc-C-cEEEEECCHHHHhc----------ccCCeEEECChhhhcccCCCCEEEECCCCc
Confidence 45679999999999999999986 5 99999999999987 247899999998844558999999998887
Q ss_pred hhCHh-------hHHHHHHHHhcccccCcEEEEEee
Q 048309 148 AVGHE-------YMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 148 ~~~~~-------~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
+.+.. +...+++++.+.| |||.+++...
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~ 124 (170)
T 3q87_B 90 PDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVI 124 (170)
T ss_dssp TTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEE
T ss_pred cCCccccccCCcchHHHHHHHHhhC-CCCEEEEEEe
Confidence 64322 3456788888888 9999998664
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.52 E-value=6e-15 Score=124.39 Aligned_cols=90 Identities=24% Similarity=0.320 Sum_probs=78.5
Q ss_pred CCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEccc-CCCC-C-CCCCCEEEEcc
Q 048309 68 SKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDY-RQLP-K-AKKYDRIISCE 144 (288)
Q Consensus 68 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~-~~~~-~-~~~fD~I~~~~ 144 (288)
.++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.++++ . .+++++++|+ ..++ . +++||+|++.
T Consensus 47 ~~~~~vLDiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~-----~-~~~~~~~~d~~~~~~~~~~~~fD~v~~~- 118 (226)
T 3m33_A 47 TPQTRVLEAGCGHGPDAARFGPQ-AARWAAYDFSPELLKLARAN-----A-PHADVYEWNGKGELPAGLGAPFGLIVSR- 118 (226)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHH-----C-TTSEEEECCSCSSCCTTCCCCEEEEEEE-
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHh-----C-CCceEEEcchhhccCCcCCCCEEEEEeC-
Confidence 57789999999999999999987 78999999999999999987 1 4799999999 4565 4 6899999997
Q ss_pred chhhhCHhhHHHHHHHHhcccccCcEEE
Q 048309 145 MMEAVGHEYMEEYFGCCESLLAKDGLLV 172 (288)
Q Consensus 145 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~ 172 (288)
.+...+++++.++|||||.++
T Consensus 119 -------~~~~~~l~~~~~~LkpgG~l~ 139 (226)
T 3m33_A 119 -------RGPTSVILRLPELAAPDAHFL 139 (226)
T ss_dssp -------SCCSGGGGGHHHHEEEEEEEE
T ss_pred -------CCHHHHHHHHHHHcCCCcEEE
Confidence 245677889999999999999
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.52 E-value=4.5e-14 Score=121.92 Aligned_cols=97 Identities=19% Similarity=0.272 Sum_probs=82.9
Q ss_pred CCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CCCCCCEEEEccc
Q 048309 68 SKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAKKYDRIISCEM 145 (288)
Q Consensus 68 ~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~~fD~I~~~~~ 145 (288)
.++.+|||||||+|.++..+++. ++.+|+|+|+|+.+++.++++. .++.+..+|+.+++ .+++||+|++..+
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~------~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 157 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY------PQVTFCVASSHRLPFSDTSMDAIIRIYA 157 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC------TTSEEEECCTTSCSBCTTCEEEEEEESC
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhC------CCcEEEEcchhhCCCCCCceeEEEEeCC
Confidence 57789999999999999999987 5789999999999999998764 36899999999887 6689999998765
Q ss_pred hhhhCHhhHHHHHHHHhcccccCcEEEEEeecCC
Q 048309 146 MEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTP 179 (288)
Q Consensus 146 l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 179 (288)
. .+++++.++|||||.+++.+....
T Consensus 158 ~---------~~l~~~~~~L~pgG~l~~~~~~~~ 182 (269)
T 1p91_A 158 P---------CKAEELARVVKPGGWVITATPGPR 182 (269)
T ss_dssp C---------CCHHHHHHHEEEEEEEEEEEECTT
T ss_pred h---------hhHHHHHHhcCCCcEEEEEEcCHH
Confidence 2 246888999999999999876543
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.51 E-value=2.3e-14 Score=126.23 Aligned_cols=125 Identities=19% Similarity=0.189 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHH----cCCCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEc
Q 048309 52 VAQMRKHSLLIEK----ARVSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLC 126 (288)
Q Consensus 52 ~a~~~~~~~l~~~----~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~ 126 (288)
..+.+.+.+.+.. ....+..+|||||||+|.++..+++. ++.+|++||+++.+++.|++++.... ..+++++++
T Consensus 68 ~~Y~e~m~~~~~~l~~~~p~p~~~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~-~~rv~v~~~ 146 (317)
T 3gjy_A 68 FEYMRWIATGARAFIDAHQDASKLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPR-APRVKIRVD 146 (317)
T ss_dssp SHHHHHHHHHHHHHHHHHSCGGGCEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCC-TTTEEEEES
T ss_pred hHHHHHHHHHHHhhcccCCCCCCCEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccC-CCceEEEEC
Confidence 3455555555543 22112349999999999999999985 77899999999999999999875432 258999999
Q ss_pred ccCCCC---CCCCCCEEEEccchhhhCHhh--HHHHHHHHhcccccCcEEEEEeec
Q 048309 127 DYRQLP---KAKKYDRIISCEMMEAVGHEY--MEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 127 d~~~~~---~~~~fD~I~~~~~l~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
|+.++. .+++||+|++........+.. ..++++.+.++|+|||++++....
T Consensus 147 Da~~~l~~~~~~~fDvIi~D~~~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~~ 202 (317)
T 3gjy_A 147 DARMVAESFTPASRDVIIRDVFAGAITPQNFTTVEFFEHCHRGLAPGGLYVANCGD 202 (317)
T ss_dssp CHHHHHHTCCTTCEEEEEECCSTTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred cHHHHHhhccCCCCCEEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEEecC
Confidence 998753 357899999965433211112 268999999999999999997754
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=6.6e-14 Score=123.47 Aligned_cols=109 Identities=21% Similarity=0.187 Sum_probs=84.6
Q ss_pred CCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHH---cCCCCceEEEEcccCCCC---CCCCCCE
Q 048309 67 VSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNE---AGLQDHIRLYLCDYRQLP---KAKKYDR 139 (288)
Q Consensus 67 ~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~---~g~~~~v~~~~~d~~~~~---~~~~fD~ 139 (288)
..++.+|||||||+|..+..+++. +..+|+++|+++.+++.|++++.. .....+++++.+|+.++. .+++||+
T Consensus 93 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDv 172 (304)
T 3bwc_A 93 HPKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDV 172 (304)
T ss_dssp SSSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEE
T ss_pred CCCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeE
Confidence 356789999999999999999987 457999999999999999998742 112357999999998764 3678999
Q ss_pred EEEccchhhhCHhhH--HHHHHHHhcccccCcEEEEEe
Q 048309 140 IISCEMMEAVGHEYM--EEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 140 I~~~~~l~~~~~~~~--~~~l~~~~~~LkpgG~l~~~~ 175 (288)
|++.....+.+.... .++++++.++|+|||++++..
T Consensus 173 Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 210 (304)
T 3bwc_A 173 VIIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQG 210 (304)
T ss_dssp EEEECC---------CCHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 999876654322222 689999999999999999864
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=6.8e-14 Score=121.37 Aligned_cols=110 Identities=15% Similarity=0.237 Sum_probs=92.9
Q ss_pred HHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCE
Q 048309 60 LLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDR 139 (288)
Q Consensus 60 ~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~ 139 (288)
++.+.. ++|.+|||+|||+|.++..+|+...++|+++|++|.+++.++++++.+++.++++++++|..++...+.||.
T Consensus 118 ri~~~~--~~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~~~~~D~ 195 (278)
T 3k6r_A 118 RMAKVA--KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADR 195 (278)
T ss_dssp HHHHHC--CTTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEE
T ss_pred HHHHhc--CCCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhccccCCCE
Confidence 445543 478999999999999999999875579999999999999999999999998889999999999887789999
Q ss_pred EEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 140 IISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 140 I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
|++..... ...++..+.++|++||.+.+.++.
T Consensus 196 Vi~~~p~~------~~~~l~~a~~~lk~gG~ih~~~~~ 227 (278)
T 3k6r_A 196 ILMGYVVR------THEFIPKALSIAKDGAIIHYHNTV 227 (278)
T ss_dssp EEECCCSS------GGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred EEECCCCc------HHHHHHHHHHHcCCCCEEEEEeee
Confidence 99874322 235667777899999998876654
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=9.1e-15 Score=131.76 Aligned_cols=135 Identities=17% Similarity=0.128 Sum_probs=100.3
Q ss_pred CChHHHHHhhhhhcCCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCc------ccHHHHHHHHc--cCCEEEEEcC
Q 048309 29 NSLAQAHRNISYHYDLDEDEDLKVAQMRKHSLLIEKARVSKEHEVLEIGCG------WGTFAIEVVRQ--TGCNYTGITL 100 (288)
Q Consensus 29 ~~~~~~~~~~a~~Yd~~~~~~l~~a~~~~~~~l~~~~~~~~~~~vLDiGcG------~G~~~~~la~~--~~~~v~giD~ 100 (288)
+.....++.++..|+...... .......+..+++.+.. ++.+||||||| +|..+..+++. ++++|+|+|+
T Consensus 178 ~s~~~~fd~lA~~Y~tDK~~~-~h~y~~~Ye~lL~~l~~-~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDi 255 (419)
T 3sso_A 178 GSRKPDLSELSSRYFTPKFGF-LHWFTPHYDRHFRDYRN-QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDI 255 (419)
T ss_dssp SCCCCCHHHHHHHTTCTTBSS-SCBCHHHHHHHHGGGTT-SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEES
T ss_pred cCCCccHHHHHHHhCCCcccc-cchHHHHHHHHHHhhcC-CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEEC
Confidence 344567999999998642210 00122344555655543 46799999999 77777777765 6789999999
Q ss_pred CHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-C------CCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEE
Q 048309 101 SAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-K------AKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVL 173 (288)
Q Consensus 101 s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~------~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~ 173 (288)
|+.|.. . ..+++++++|+.+++ . .++||+|++..+ ++. .+...++++++++|||||++++
T Consensus 256 Sp~m~~---------~-~~rI~fv~GDa~dlpf~~~l~~~d~sFDlVisdgs-H~~--~d~~~aL~el~rvLKPGGvlVi 322 (419)
T 3sso_A 256 MDKSHV---------D-ELRIRTIQGDQNDAEFLDRIARRYGPFDIVIDDGS-HIN--AHVRTSFAALFPHVRPGGLYVI 322 (419)
T ss_dssp SCCGGG---------C-BTTEEEEECCTTCHHHHHHHHHHHCCEEEEEECSC-CCH--HHHHHHHHHHGGGEEEEEEEEE
T ss_pred CHHHhh---------c-CCCcEEEEecccccchhhhhhcccCCccEEEECCc-ccc--hhHHHHHHHHHHhcCCCeEEEE
Confidence 999731 1 258999999999876 3 589999999754 555 6788999999999999999999
Q ss_pred EeecC
Q 048309 174 QFSST 178 (288)
Q Consensus 174 ~~~~~ 178 (288)
.++..
T Consensus 323 ~Dl~t 327 (419)
T 3sso_A 323 EDMWT 327 (419)
T ss_dssp ECGGG
T ss_pred Eeccc
Confidence 87653
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=6e-14 Score=126.16 Aligned_cols=105 Identities=9% Similarity=0.066 Sum_probs=88.7
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCEEEEcc
Q 048309 66 RVSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCE 144 (288)
Q Consensus 66 ~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~~~~ 144 (288)
...++.+|||||||+|..+..+++. ++.+++++|+ +.+++.+++. .+++++.+|+.+ +.+ .||+|++..
T Consensus 185 ~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~-~~p-~~D~v~~~~ 254 (352)
T 1fp2_A 185 VFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSGS-------NNLTYVGGDMFT-SIP-NADAVLLKY 254 (352)
T ss_dssp HHTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCB-------TTEEEEECCTTT-CCC-CCSEEEEES
T ss_pred ccccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhcccC-------CCcEEEeccccC-CCC-CccEEEeeh
Confidence 3456789999999999999999987 6789999999 9998877641 359999999976 422 399999999
Q ss_pred chhhhCHhhHHHHHHHHhccccc---CcEEEEEeecCCC
Q 048309 145 MMEAVGHEYMEEYFGCCESLLAK---DGLLVLQFSSTPD 180 (288)
Q Consensus 145 ~l~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~ 180 (288)
++||++......++++++++|+| ||++++.+...+.
T Consensus 255 ~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~ 293 (352)
T 1fp2_A 255 ILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDK 293 (352)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECT
T ss_pred hhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeecCC
Confidence 99999766666999999999999 9999998876543
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.49 E-value=1.4e-13 Score=122.90 Aligned_cols=112 Identities=12% Similarity=0.162 Sum_probs=88.9
Q ss_pred HHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcC----------CCCceEEEE
Q 048309 58 HSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQMKYAEMKVNEAG----------LQDHIRLYL 125 (288)
Q Consensus 58 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~giD~s~~~~~~a~~~~~~~g----------~~~~v~~~~ 125 (288)
...++..+.+.++.+|||+|||+|.++..+++. +..+|+++|+++.+++.|+++++..+ ...++++++
T Consensus 94 ~~~~l~~l~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~ 173 (336)
T 2b25_A 94 INMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIH 173 (336)
T ss_dssp HHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEE
T ss_pred HHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEE
Confidence 445667778889999999999999999999986 23799999999999999999988632 235899999
Q ss_pred cccCCCC---CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEee
Q 048309 126 CDYRQLP---KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 126 ~d~~~~~---~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
+|+.+.. ++++||+|++... ....+++++.++|+|||.+++...
T Consensus 174 ~d~~~~~~~~~~~~fD~V~~~~~-------~~~~~l~~~~~~LkpgG~lv~~~~ 220 (336)
T 2b25_A 174 KDISGATEDIKSLTFDAVALDML-------NPHVTLPVFYPHLKHGGVCAVYVV 220 (336)
T ss_dssp SCTTCCC-------EEEEEECSS-------STTTTHHHHGGGEEEEEEEEEEES
T ss_pred CChHHcccccCCCCeeEEEECCC-------CHHHHHHHHHHhcCCCcEEEEEeC
Confidence 9998863 4568999998532 223478999999999999998654
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=2.2e-14 Score=122.03 Aligned_cols=108 Identities=12% Similarity=0.082 Sum_probs=85.1
Q ss_pred HHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc-----cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccC
Q 048309 55 MRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-----TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYR 129 (288)
Q Consensus 55 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-----~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~ 129 (288)
...+..++... ++.+|||||||+|..+..+++. ++++|+|||+++.+++.|+. +..+++++++|+.
T Consensus 70 ~~~l~~~l~~~---~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~------~~~~v~~~~gD~~ 140 (236)
T 2bm8_A 70 QAVYHDMLWEL---RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS------DMENITLHQGDCS 140 (236)
T ss_dssp HHHHHHHHHHH---CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG------GCTTEEEEECCSS
T ss_pred HHHHHHHHHhc---CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhc------cCCceEEEECcch
Confidence 34455555543 4579999999999999999875 46899999999999988861 2258999999999
Q ss_pred CC---C--CCCCCCEEEEccchhhhCHhhHHHHHHHHhc-ccccCcEEEEEee
Q 048309 130 QL---P--KAKKYDRIISCEMMEAVGHEYMEEYFGCCES-LLAKDGLLVLQFS 176 (288)
Q Consensus 130 ~~---~--~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~-~LkpgG~l~~~~~ 176 (288)
+. + ...+||+|++... | .+...++.++.+ +|||||++++.+.
T Consensus 141 ~~~~l~~~~~~~fD~I~~d~~--~---~~~~~~l~~~~r~~LkpGG~lv~~d~ 188 (236)
T 2bm8_A 141 DLTTFEHLREMAHPLIFIDNA--H---ANTFNIMKWAVDHLLEEGDYFIIEDM 188 (236)
T ss_dssp CSGGGGGGSSSCSSEEEEESS--C---SSHHHHHHHHHHHTCCTTCEEEECSC
T ss_pred hHHHHHhhccCCCCEEEECCc--h---HhHHHHHHHHHHhhCCCCCEEEEEeC
Confidence 85 4 2347999998765 3 256789999997 9999999999654
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.2e-13 Score=113.96 Aligned_cols=109 Identities=17% Similarity=0.220 Sum_probs=82.5
Q ss_pred HHHHHHHHcC-CCCCCEEEEECCcccHHHHHHHHc-c--CCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC
Q 048309 57 KHSLLIEKAR-VSKEHEVLEIGCGWGTFAIEVVRQ-T--GCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP 132 (288)
Q Consensus 57 ~~~~l~~~~~-~~~~~~vLDiGcG~G~~~~~la~~-~--~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~ 132 (288)
++..+.+.+. +.++.+|||+|||+|.++..+++. + +.+|+|+|+|+.. .. .+++++++|+.+.+
T Consensus 9 kl~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~-----------~~-~~v~~~~~d~~~~~ 76 (201)
T 2plw_A 9 KLIELDNKYLFLKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD-----------PI-PNVYFIQGEIGKDN 76 (201)
T ss_dssp HHHHHHHHHCCCCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC-----------CC-TTCEEEECCTTTTS
T ss_pred HHHHHHHHcCCCCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC-----------CC-CCceEEEccccchh
Confidence 3445566655 467889999999999999999987 4 5799999999831 22 46899999998764
Q ss_pred --------------------------CCCCCCEEEEccchhhhCH--hh-------HHHHHHHHhcccccCcEEEEEeec
Q 048309 133 --------------------------KAKKYDRIISCEMMEAVGH--EY-------MEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 133 --------------------------~~~~fD~I~~~~~l~~~~~--~~-------~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
++++||+|++..++++.+. .+ ...+++++.++|+|||.+++..+.
T Consensus 77 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 156 (201)
T 2plw_A 77 MNNIKNINYIDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYL 156 (201)
T ss_dssp SCCC-----------CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred hhhhccccccccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeC
Confidence 3468999999877655311 11 234789999999999999986543
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.48 E-value=1e-13 Score=121.10 Aligned_cols=114 Identities=12% Similarity=0.160 Sum_probs=89.7
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCC
Q 048309 56 RKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAK 135 (288)
Q Consensus 56 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~ 135 (288)
.....+++.+...++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.+++++...+..++++++++|+.+++.+
T Consensus 15 ~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~L~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~~- 92 (285)
T 1zq9_A 15 LIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEK-AKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLP- 92 (285)
T ss_dssp HHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHH-SSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCC-
T ss_pred HHHHHHHHhcCCCCCCEEEEEcCcccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccch-
Confidence 45667888888888999999999999999999987 6799999999999999999987766645899999999987633
Q ss_pred CCCEEEEccchhhhCHhhHHHHHH--------------HH--hcccccCcEEE
Q 048309 136 KYDRIISCEMMEAVGHEYMEEYFG--------------CC--ESLLAKDGLLV 172 (288)
Q Consensus 136 ~fD~I~~~~~l~~~~~~~~~~~l~--------------~~--~~~LkpgG~l~ 172 (288)
+||+|+++..++..+ +....++. ++ +++|+|||.++
T Consensus 93 ~fD~vv~nlpy~~~~-~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~y 144 (285)
T 1zq9_A 93 FFDTCVANLPYQISS-PFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKLY 144 (285)
T ss_dssp CCSEEEEECCGGGHH-HHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTTC
T ss_pred hhcEEEEecCcccch-HHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCccc
Confidence 799999976655442 22222322 22 35899999764
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=6.2e-14 Score=112.48 Aligned_cols=110 Identities=17% Similarity=0.189 Sum_probs=86.3
Q ss_pred HHHHHHHHcC-CCCCCEEEEECCcccHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-
Q 048309 57 KHSLLIEKAR-VSKEHEVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP- 132 (288)
Q Consensus 57 ~~~~l~~~~~-~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~- 132 (288)
.+..+++.+. ..++.+|||+|||+|.++..+++. ++.+++|+|+++ +++. .+++++++|+.+.+
T Consensus 9 ~l~~~~~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~-----------~~~~~~~~d~~~~~~ 76 (180)
T 1ej0_A 9 KLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI-----------VGVDFLQGDFRDELV 76 (180)
T ss_dssp HHHHHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC-----------TTEEEEESCTTSHHH
T ss_pred HHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc-----------CcEEEEEcccccchh
Confidence 3445566655 567889999999999999999887 357999999999 6532 37899999998763
Q ss_pred --------CCCCCCEEEEccchhhhCHh---h------HHHHHHHHhcccccCcEEEEEeecC
Q 048309 133 --------KAKKYDRIISCEMMEAVGHE---Y------MEEYFGCCESLLAKDGLLVLQFSST 178 (288)
Q Consensus 133 --------~~~~fD~I~~~~~l~~~~~~---~------~~~~l~~~~~~LkpgG~l~~~~~~~ 178 (288)
++++||+|++..++++.+.. . ...+++++.++|+|||.+++.....
T Consensus 77 ~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 139 (180)
T 1ej0_A 77 MKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQG 139 (180)
T ss_dssp HHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESS
T ss_pred hhhhhccCCCCceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecC
Confidence 34789999998877765221 1 1688999999999999999976543
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.48 E-value=8.6e-14 Score=114.87 Aligned_cols=98 Identities=14% Similarity=0.162 Sum_probs=76.3
Q ss_pred HHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCE
Q 048309 60 LLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDR 139 (288)
Q Consensus 60 ~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~ 139 (288)
..+......++.+|||+|||+|.++..+++....+|+|+|+|+.+++.+++++. +++++++|+.+++ ++||+
T Consensus 42 ~~~~~~~~~~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~------~~~~~~~d~~~~~--~~~D~ 113 (200)
T 1ne2_A 42 IEIYNDGNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG------GVNFMVADVSEIS--GKYDT 113 (200)
T ss_dssp HHHHHHTSSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT------TSEEEECCGGGCC--CCEEE
T ss_pred HHHHhcCCCCCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcC------CCEEEECcHHHCC--CCeeE
Confidence 333333556788999999999999999998733479999999999999998864 5899999999875 78999
Q ss_pred EEEccchhhhCHhhHHHHHHHHhccc
Q 048309 140 IISCEMMEAVGHEYMEEYFGCCESLL 165 (288)
Q Consensus 140 I~~~~~l~~~~~~~~~~~l~~~~~~L 165 (288)
|+++.+++|........+++++.+.+
T Consensus 114 v~~~~p~~~~~~~~~~~~l~~~~~~~ 139 (200)
T 1ne2_A 114 WIMNPPFGSVVKHSDRAFIDKAFETS 139 (200)
T ss_dssp EEECCCC-------CHHHHHHHHHHE
T ss_pred EEECCCchhccCchhHHHHHHHHHhc
Confidence 99999999985434457888888888
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.48 E-value=5.9e-13 Score=110.29 Aligned_cols=107 Identities=10% Similarity=0.096 Sum_probs=86.9
Q ss_pred HHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCE
Q 048309 60 LLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDR 139 (288)
Q Consensus 60 ~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~ 139 (288)
..+......++.+|||+|||+|.++..+++....+|+|+|+++.+++.++++++..++ +++++++|+.+++ ++||+
T Consensus 40 ~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~--~~~D~ 115 (207)
T 1wy7_A 40 WLAYSLGDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKG--KFKVFIGDVSEFN--SRVDI 115 (207)
T ss_dssp HHHHHTTSSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTT--SEEEEESCGGGCC--CCCSE
T ss_pred HHHHHcCCCCcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCC--CEEEEECchHHcC--CCCCE
Confidence 3344445567889999999999999999987334899999999999999999988876 7999999999875 58999
Q ss_pred EEEccchhhhCHhhHHHHHHHHhcccccCcEEE
Q 048309 140 IISCEMMEAVGHEYMEEYFGCCESLLAKDGLLV 172 (288)
Q Consensus 140 I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~ 172 (288)
|+++..+++........+++++.+.+ |+.++
T Consensus 116 v~~~~p~~~~~~~~~~~~l~~~~~~l--~~~~~ 146 (207)
T 1wy7_A 116 VIMNPPFGSQRKHADRPFLLKAFEIS--DVVYS 146 (207)
T ss_dssp EEECCCCSSSSTTTTHHHHHHHHHHC--SEEEE
T ss_pred EEEcCCCccccCCchHHHHHHHHHhc--CcEEE
Confidence 99998877764444567888888888 55443
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1e-13 Score=122.17 Aligned_cols=111 Identities=21% Similarity=0.257 Sum_probs=85.6
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHH--cCC-CCceEEEEcccCCC-C-CCCCCCE
Q 048309 66 RVSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNE--AGL-QDHIRLYLCDYRQL-P-KAKKYDR 139 (288)
Q Consensus 66 ~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~--~g~-~~~v~~~~~d~~~~-~-~~~~fD~ 139 (288)
....+.+|||||||+|..+..++++ +..+|+++|+++.+++.|++++.. .++ .++++++.+|+.+. + .+++||+
T Consensus 92 ~~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~ 171 (304)
T 2o07_A 92 SHPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDV 171 (304)
T ss_dssp TSSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEE
T ss_pred hCCCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceE
Confidence 3446689999999999999999987 457999999999999999998765 333 35899999998764 2 4578999
Q ss_pred EEEccchhhhCHh--hHHHHHHHHhcccccCcEEEEEee
Q 048309 140 IISCEMMEAVGHE--YMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 140 I~~~~~l~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
|++.......+.. ...++++++.++|+|||++++...
T Consensus 172 Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 210 (304)
T 2o07_A 172 IITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGE 210 (304)
T ss_dssp EEEECC-----------CHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEecC
Confidence 9997653322111 235789999999999999998653
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.4e-13 Score=125.31 Aligned_cols=110 Identities=15% Similarity=0.110 Sum_probs=89.7
Q ss_pred CCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCC-ceEEEEcccCCCC-----CCCCCCEEE
Q 048309 68 SKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQD-HIRLYLCDYRQLP-----KAKKYDRII 141 (288)
Q Consensus 68 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~-~v~~~~~d~~~~~-----~~~~fD~I~ 141 (288)
.++.+|||+|||+|.++..+++....+|+|+|+|+.+++.|+++++.+++.+ +++++++|+.+.. ...+||+|+
T Consensus 211 ~~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii 290 (385)
T 2b78_A 211 AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIII 290 (385)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred cCCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEEE
Confidence 4678999999999999999998633489999999999999999999999865 8999999997742 246899999
Q ss_pred Eccchh-----hhC--HhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 142 SCEMME-----AVG--HEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 142 ~~~~l~-----~~~--~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
+..... +.. ...+.+++..+.++|+|||.+++++..
T Consensus 291 ~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~ 333 (385)
T 2b78_A 291 IDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNA 333 (385)
T ss_dssp ECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred ECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 965431 111 145667889999999999999987643
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=1.5e-13 Score=123.81 Aligned_cols=111 Identities=10% Similarity=0.095 Sum_probs=90.9
Q ss_pred HHHHHc--CCCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCC
Q 048309 60 LLIEKA--RVSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKK 136 (288)
Q Consensus 60 ~l~~~~--~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~ 136 (288)
.+++.+ ...++.+|||||||+|.++..+++. ++.+++++|+ +.+++.+++ . .+++++.+|+.+ +.+ +
T Consensus 182 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~-~~v~~~~~d~~~-~~~-~ 251 (358)
T 1zg3_A 182 LVLQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTG------N-ENLNFVGGDMFK-SIP-S 251 (358)
T ss_dssp HHHHHTHHHHHTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCC------C-SSEEEEECCTTT-CCC-C
T ss_pred HHHHhcchhccCCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhccc------C-CCcEEEeCccCC-CCC-C
Confidence 345544 3446689999999999999999988 6779999999 788876653 2 369999999987 522 5
Q ss_pred CCEEEEccchhhhCHhhHHHHHHHHhccccc---CcEEEEEeecCCC
Q 048309 137 YDRIISCEMMEAVGHEYMEEYFGCCESLLAK---DGLLVLQFSSTPD 180 (288)
Q Consensus 137 fD~I~~~~~l~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~ 180 (288)
||+|++..++||++.+....+++++.++|+| ||++++.+...+.
T Consensus 252 ~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~ 298 (358)
T 1zg3_A 252 ADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDE 298 (358)
T ss_dssp CSEEEEESCGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEECEECT
T ss_pred ceEEEEcccccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeccCC
Confidence 9999999999999766666999999999999 9999998776543
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=99.46 E-value=1.6e-13 Score=122.39 Aligned_cols=109 Identities=17% Similarity=0.192 Sum_probs=86.3
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHc--CC-CCceEEEEcccCCCC---CCCCCC
Q 048309 66 RVSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEA--GL-QDHIRLYLCDYRQLP---KAKKYD 138 (288)
Q Consensus 66 ~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~--g~-~~~v~~~~~d~~~~~---~~~~fD 138 (288)
....+.+|||||||+|..+..++++ +..+|+++|+|+.+++.|++++... ++ ..+++++++|+.++. .+++||
T Consensus 117 ~~~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fD 196 (334)
T 1xj5_A 117 SIPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYD 196 (334)
T ss_dssp TSSCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEE
T ss_pred hCCCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCcc
Confidence 3456789999999999999999987 4679999999999999999987652 33 257999999987642 357899
Q ss_pred EEEEccchhhhCHhh--HHHHHHHHhcccccCcEEEEE
Q 048309 139 RIISCEMMEAVGHEY--MEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 139 ~I~~~~~l~~~~~~~--~~~~l~~~~~~LkpgG~l~~~ 174 (288)
+|++......-.... ...+++++.++|+|||++++.
T Consensus 197 lIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 234 (334)
T 1xj5_A 197 AVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQ 234 (334)
T ss_dssp EEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 999965421111121 478999999999999999985
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=1.9e-13 Score=119.28 Aligned_cols=110 Identities=15% Similarity=0.205 Sum_probs=87.4
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcC--C-CCceEEEEcccCCCC--CCCCCCE
Q 048309 66 RVSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAG--L-QDHIRLYLCDYRQLP--KAKKYDR 139 (288)
Q Consensus 66 ~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g--~-~~~v~~~~~d~~~~~--~~~~fD~ 139 (288)
...++.+|||||||+|..+..++++ +..+|+++|+++.+++.|++++...+ + .++++++.+|+.+.. ..++||+
T Consensus 75 ~~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~ 154 (283)
T 2i7c_A 75 VSKEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDV 154 (283)
T ss_dssp TSSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEE
T ss_pred cCCCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceE
Confidence 3446789999999999999999987 46799999999999999999875431 1 258999999998743 4678999
Q ss_pred EEEccchhhhCHhhH--HHHHHHHhcccccCcEEEEEe
Q 048309 140 IISCEMMEAVGHEYM--EEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 140 I~~~~~l~~~~~~~~--~~~l~~~~~~LkpgG~l~~~~ 175 (288)
|++.....+.+.... .++++.+.+.|+|||++++..
T Consensus 155 Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~ 192 (283)
T 2i7c_A 155 IIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQC 192 (283)
T ss_dssp EEEECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEEC
T ss_pred EEEcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEC
Confidence 999754333222232 689999999999999999853
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=1.9e-13 Score=121.06 Aligned_cols=110 Identities=20% Similarity=0.254 Sum_probs=88.2
Q ss_pred CCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHH--cC-C-CCceEEEEcccCCC-C-CCCCCCEE
Q 048309 68 SKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNE--AG-L-QDHIRLYLCDYRQL-P-KAKKYDRI 140 (288)
Q Consensus 68 ~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~--~g-~-~~~v~~~~~d~~~~-~-~~~~fD~I 140 (288)
..+.+|||||||+|..+..++++ +..+|+++|+++.+++.|++++.. .+ + .++++++.+|+.+. + .+++||+|
T Consensus 76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 155 (314)
T 1uir_A 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (314)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEE
Confidence 45679999999999999999987 567999999999999999998764 22 2 35899999999874 3 56789999
Q ss_pred EEccchhh---hCHhh--HHHHHHHHhcccccCcEEEEEeec
Q 048309 141 ISCEMMEA---VGHEY--MEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 141 ~~~~~l~~---~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
++....+. -+... ..++++++.++|+|||++++....
T Consensus 156 i~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~ 197 (314)
T 1uir_A 156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGM 197 (314)
T ss_dssp EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEE
T ss_pred EECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEccC
Confidence 99866543 11111 378999999999999999997543
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=8.7e-14 Score=116.02 Aligned_cols=88 Identities=20% Similarity=0.341 Sum_probs=75.5
Q ss_pred CCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CCCCCCEEEEccc
Q 048309 67 VSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAKKYDRIISCEM 145 (288)
Q Consensus 67 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~~fD~I~~~~~ 145 (288)
..++.+|||||||+|.++..+ +.+++|+|+|+. +++++++|+.+++ ++++||+|++..+
T Consensus 65 ~~~~~~vLDiG~G~G~~~~~l----~~~v~~~D~s~~----------------~~~~~~~d~~~~~~~~~~fD~v~~~~~ 124 (215)
T 2zfu_A 65 RPASLVVADFGCGDCRLASSI----RNPVHCFDLASL----------------DPRVTVCDMAQVPLEDESVDVAVFCLS 124 (215)
T ss_dssp SCTTSCEEEETCTTCHHHHHC----CSCEEEEESSCS----------------STTEEESCTTSCSCCTTCEEEEEEESC
T ss_pred cCCCCeEEEECCcCCHHHHHh----hccEEEEeCCCC----------------CceEEEeccccCCCCCCCEeEEEEehh
Confidence 356789999999999998876 368999999986 3678999999887 6689999999999
Q ss_pred hhhhCHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 146 MEAVGHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 146 l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
+++ .+...+++++.++|+|||.+++.+..
T Consensus 125 l~~---~~~~~~l~~~~~~L~~gG~l~i~~~~ 153 (215)
T 2zfu_A 125 LMG---TNIRDFLEEANRVLKPGGLLKVAEVS 153 (215)
T ss_dssp CCS---SCHHHHHHHHHHHEEEEEEEEEEECG
T ss_pred ccc---cCHHHHHHHHHHhCCCCeEEEEEEcC
Confidence 963 67899999999999999999997643
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.44 E-value=1.1e-13 Score=122.50 Aligned_cols=107 Identities=23% Similarity=0.320 Sum_probs=82.8
Q ss_pred CCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHc--CC-CCceEEEEcccCCC-C-CCCCCCEEE
Q 048309 68 SKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEA--GL-QDHIRLYLCDYRQL-P-KAKKYDRII 141 (288)
Q Consensus 68 ~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~--g~-~~~v~~~~~d~~~~-~-~~~~fD~I~ 141 (288)
..+.+|||||||+|..+..++++ +..+|+++|+++.+++.|++++... ++ .++++++.+|+.+. + ..++||+|+
T Consensus 107 ~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 186 (314)
T 2b2c_A 107 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII 186 (314)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEE
Confidence 35679999999999999999987 5679999999999999999987643 33 35899999999774 2 467899999
Q ss_pred EccchhhhCH-hhH--HHHHHHHhcccccCcEEEEEe
Q 048309 142 SCEMMEAVGH-EYM--EEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 142 ~~~~l~~~~~-~~~--~~~l~~~~~~LkpgG~l~~~~ 175 (288)
+... .++.+ ... .++++++.++|+|||++++..
T Consensus 187 ~d~~-~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~ 222 (314)
T 2b2c_A 187 TDSS-DPVGPAESLFGQSYYELLRDALKEDGILSSQG 222 (314)
T ss_dssp ECCC--------------HHHHHHHHEEEEEEEEEEC
T ss_pred EcCC-CCCCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence 8654 33321 222 689999999999999999864
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=99.44 E-value=2e-13 Score=124.68 Aligned_cols=110 Identities=18% Similarity=0.141 Sum_probs=91.0
Q ss_pred CCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-----CCCCCCEEEE
Q 048309 68 SKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-----KAKKYDRIIS 142 (288)
Q Consensus 68 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-----~~~~fD~I~~ 142 (288)
+++.+|||+|||+|.++..+++....+|+|+|+|+.+++.|+++++.+++.++++++++|+.+.. ..++||+|++
T Consensus 216 ~~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~ 295 (396)
T 2as0_A 216 QPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVL 295 (396)
T ss_dssp CTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred hCCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEE
Confidence 47889999999999999999986334999999999999999999999998658999999998753 2578999999
Q ss_pred ccchhhhCH-------hhHHHHHHHHhcccccCcEEEEEeec
Q 048309 143 CEMMEAVGH-------EYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 143 ~~~l~~~~~-------~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
.......+. .....++.++.++|+|||.+++.+..
T Consensus 296 dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 337 (396)
T 2as0_A 296 DPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCS 337 (396)
T ss_dssp CCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 654321111 55778999999999999999887654
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.44 E-value=9.7e-14 Score=120.92 Aligned_cols=108 Identities=12% Similarity=0.122 Sum_probs=82.2
Q ss_pred HHHHHHHHHcCCC-CCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEE-EcccCCCC-
Q 048309 56 RKHSLLIEKARVS-KEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLY-LCDYRQLP- 132 (288)
Q Consensus 56 ~~~~~l~~~~~~~-~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~-~~d~~~~~- 132 (288)
.++..+++.+.+. ++.+|||+|||||.++..+++....+|+|+|+|+.|++.+.+. . .++... ..|+..+.
T Consensus 71 ~Kl~~~l~~~~~~~~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r~---~---~rv~~~~~~ni~~l~~ 144 (291)
T 3hp7_A 71 LKLEKALAVFNLSVEDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLRQ---D---DRVRSMEQYNFRYAEP 144 (291)
T ss_dssp HHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHHT---C---TTEEEECSCCGGGCCG
T ss_pred HHHHHHHHhcCCCccccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHHh---C---cccceecccCceecch
Confidence 3677788888765 5679999999999999999887445999999999999875432 1 233322 34554433
Q ss_pred ---CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 133 ---KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 133 ---~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
+..+||+|++..+++++ ..++.++.++|+|||.+++.
T Consensus 145 ~~l~~~~fD~v~~d~sf~sl-----~~vL~e~~rvLkpGG~lv~l 184 (291)
T 3hp7_A 145 VDFTEGLPSFASIDVSFISL-----NLILPALAKILVDGGQVVAL 184 (291)
T ss_dssp GGCTTCCCSEEEECCSSSCG-----GGTHHHHHHHSCTTCEEEEE
T ss_pred hhCCCCCCCEEEEEeeHhhH-----HHHHHHHHHHcCcCCEEEEE
Confidence 23459999998887765 67899999999999999985
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.1e-12 Score=118.92 Aligned_cols=104 Identities=16% Similarity=0.243 Sum_probs=88.0
Q ss_pred CCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCC-CC--CCCCCCEEEE
Q 048309 67 VSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQ-LP--KAKKYDRIIS 142 (288)
Q Consensus 67 ~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~-~~--~~~~fD~I~~ 142 (288)
..++.+|||+| |+|.++..++.. +..+|+|+|+++.+++.|+++++..|+. +++++++|+.+ ++ .+++||+|++
T Consensus 170 ~~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~-~v~~~~~D~~~~l~~~~~~~fD~Vi~ 247 (373)
T 2qm3_A 170 DLENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYE-DIEIFTFDLRKPLPDYALHKFDTFIT 247 (373)
T ss_dssp CSTTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCC-CEEEECCCTTSCCCTTTSSCBSEEEE
T ss_pred CCCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CEEEEEChhhhhchhhccCCccEEEE
Confidence 34678999999 999999999886 3469999999999999999999998885 89999999998 65 2468999999
Q ss_pred ccchhhhCHhhHHHHHHHHhcccccCcEE-EEEe
Q 048309 143 CEMMEAVGHEYMEEYFGCCESLLAKDGLL-VLQF 175 (288)
Q Consensus 143 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l-~~~~ 175 (288)
+..+... ....+++++.++|+|||++ ++..
T Consensus 248 ~~p~~~~---~~~~~l~~~~~~LkpgG~~~~~~~ 278 (373)
T 2qm3_A 248 DPPETLE---AIRAFVGRGIATLKGPRCAGYFGI 278 (373)
T ss_dssp CCCSSHH---HHHHHHHHHHHTBCSTTCEEEEEE
T ss_pred CCCCchH---HHHHHHHHHHHHcccCCeEEEEEE
Confidence 8776544 3588999999999999954 5543
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.1e-12 Score=121.84 Aligned_cols=118 Identities=13% Similarity=0.125 Sum_probs=94.9
Q ss_pred HHHHcCCCCCCEEEEECCcccHHHHHHHHc-cC-CEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC--C-CC
Q 048309 61 LIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-TG-CNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP--K-AK 135 (288)
Q Consensus 61 l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~-~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~--~-~~ 135 (288)
+...+.+.++.+|||+|||+|..+..+++. .+ .+|+++|+++.+++.++++++..|+ .+++++++|+.+++ . ++
T Consensus 251 ~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~ 329 (450)
T 2yxl_A 251 ASIVLDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGI-KIVKPLVKDARKAPEIIGEE 329 (450)
T ss_dssp HHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTC-CSEEEECSCTTCCSSSSCSS
T ss_pred HHHhcCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC-CcEEEEEcChhhcchhhccC
Confidence 344567788999999999999999999986 34 6999999999999999999999998 47999999998876 2 27
Q ss_pred CCCEEEEcc------chhhhCH-------hh-------HHHHHHHHhcccccCcEEEEEeecCC
Q 048309 136 KYDRIISCE------MMEAVGH-------EY-------MEEYFGCCESLLAKDGLLVLQFSSTP 179 (288)
Q Consensus 136 ~fD~I~~~~------~l~~~~~-------~~-------~~~~l~~~~~~LkpgG~l~~~~~~~~ 179 (288)
+||+|++.. ++++.+. .+ ...+++++.++|||||++++.+++..
T Consensus 330 ~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~ 393 (450)
T 2yxl_A 330 VADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIF 393 (450)
T ss_dssp CEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCC
T ss_pred CCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 899999742 3332211 11 16789999999999999999887643
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=4.7e-13 Score=130.38 Aligned_cols=107 Identities=16% Similarity=0.157 Sum_probs=91.6
Q ss_pred CCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCC-CceEEEEcccCCCC--CCCCCCEEEEccc
Q 048309 69 KEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQ-DHIRLYLCDYRQLP--KAKKYDRIISCEM 145 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~-~~v~~~~~d~~~~~--~~~~fD~I~~~~~ 145 (288)
++.+|||+|||+|.++..++.....+|+++|+|+.+++.++++++.+++. .+++++++|+.++. ..++||+|++...
T Consensus 539 ~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DPP 618 (703)
T 3v97_A 539 KGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDPP 618 (703)
T ss_dssp TTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEECCC
T ss_pred CCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEECCc
Confidence 68899999999999999998863347999999999999999999999986 58999999998843 4578999999753
Q ss_pred -----------hhhhCHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 146 -----------MEAVGHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 146 -----------l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
+.+. .+...++..+.++|+|||.+++++..
T Consensus 619 ~f~~~~~~~~~~~~~--~~~~~ll~~a~~~LkpgG~L~~s~~~ 659 (703)
T 3v97_A 619 TFSNSKRMEDAFDVQ--RDHLALMKDLKRLLRAGGTIMFSNNK 659 (703)
T ss_dssp SBC-------CCBHH--HHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred cccCCccchhHHHHH--HHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 2333 67788999999999999999987654
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.44 E-value=4e-13 Score=122.73 Aligned_cols=110 Identities=18% Similarity=0.129 Sum_probs=91.2
Q ss_pred CCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCC-CCceEEEEcccCCCC-----CCCCCCEEE
Q 048309 68 SKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGL-QDHIRLYLCDYRQLP-----KAKKYDRII 141 (288)
Q Consensus 68 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~-~~~v~~~~~d~~~~~-----~~~~fD~I~ 141 (288)
.++.+|||+|||+|.++..+++....+|+|+|+|+.+++.|+++++.+++ +++++++++|+.++. ...+||+|+
T Consensus 219 ~~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii 298 (396)
T 3c0k_A 219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_dssp CTTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred hCCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEE
Confidence 47789999999999999999986335999999999999999999999998 658999999998753 157899999
Q ss_pred EccchhhhC-------HhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 142 SCEMMEAVG-------HEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 142 ~~~~l~~~~-------~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
+.......+ ......++.++.+.|+|||.+++++..
T Consensus 299 ~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 341 (396)
T 3c0k_A 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCS 341 (396)
T ss_dssp ECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred ECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 975432110 146788999999999999999987643
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=1.8e-13 Score=121.57 Aligned_cols=107 Identities=18% Similarity=0.293 Sum_probs=85.6
Q ss_pred CCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHH--cCC-CCceEEEEcccCCCC--CCCCCCEEE
Q 048309 68 SKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNE--AGL-QDHIRLYLCDYRQLP--KAKKYDRII 141 (288)
Q Consensus 68 ~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~--~g~-~~~v~~~~~d~~~~~--~~~~fD~I~ 141 (288)
.++.+|||||||+|..+..++++ +..+|+++|+|+.+++.|++++.. .++ .++++++++|+.+.. .+++||+|+
T Consensus 115 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi 194 (321)
T 2pt6_A 115 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 194 (321)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEE
Confidence 35679999999999999999987 568999999999999999998765 223 357999999987742 457899999
Q ss_pred EccchhhhCH-hhH--HHHHHHHhcccccCcEEEEEe
Q 048309 142 SCEMMEAVGH-EYM--EEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 142 ~~~~l~~~~~-~~~--~~~l~~~~~~LkpgG~l~~~~ 175 (288)
+...- +..+ ... .++++++.+.|+|||++++..
T Consensus 195 ~d~~~-p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 230 (321)
T 2pt6_A 195 VDSSD-PIGPAETLFNQNFYEKIYNALKPNGYCVAQC 230 (321)
T ss_dssp EECCC-SSSGGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred ECCcC-CCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 87532 2211 222 789999999999999999864
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=3e-13 Score=114.74 Aligned_cols=104 Identities=9% Similarity=0.149 Sum_probs=92.1
Q ss_pred CCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCEEEEccch
Q 048309 68 SKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMM 146 (288)
Q Consensus 68 ~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~~~~~l 146 (288)
.++.+|||||||+|-++..++.. +..+|+++|+++.+++.+++++..+|+ +.++.+.|...-++.+++|++++.-++
T Consensus 131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~--~~~~~v~D~~~~~p~~~~DvaL~lkti 208 (281)
T 3lcv_B 131 PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNV--PHRTNVADLLEDRLDEPADVTLLLKTL 208 (281)
T ss_dssp CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTC--CEEEEECCTTTSCCCSCCSEEEETTCH
T ss_pred CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCC--CceEEEeeecccCCCCCcchHHHHHHH
Confidence 45779999999999999999877 788999999999999999999999997 489999999988878999999999999
Q ss_pred hhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 147 EAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 147 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
+|+..+.....+ ++.+.|+|+|+++..
T Consensus 209 ~~Le~q~kg~g~-~ll~aL~~~~vvVSf 235 (281)
T 3lcv_B 209 PCLETQQRGSGW-EVIDIVNSPNIVVTF 235 (281)
T ss_dssp HHHHHHSTTHHH-HHHHHSSCSEEEEEE
T ss_pred HHhhhhhhHHHH-HHHHHhCCCCEEEec
Confidence 999555555666 899999999988864
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=1.6e-13 Score=119.72 Aligned_cols=107 Identities=21% Similarity=0.255 Sum_probs=83.6
Q ss_pred CCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHc--CC--------CCceEEEEcccCCCC-CCCC
Q 048309 68 SKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEA--GL--------QDHIRLYLCDYRQLP-KAKK 136 (288)
Q Consensus 68 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~--g~--------~~~v~~~~~d~~~~~-~~~~ 136 (288)
..+.+|||||||+|..+..+++++..+|+++|+++.+++.|++++ .. ++ .++++++.+|+.+.. .+++
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~~~~ 152 (281)
T 1mjf_A 74 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRG 152 (281)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCC
T ss_pred CCCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhcccCC
Confidence 456899999999999999998874469999999999999999987 33 22 358999999986642 2578
Q ss_pred CCEEEEccchhhhCHhh--HHHHHHHHhcccccCcEEEEEe
Q 048309 137 YDRIISCEMMEAVGHEY--MEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 137 fD~I~~~~~l~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
||+|++......-+... ..++++++.++|+|||++++..
T Consensus 153 fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~ 193 (281)
T 1mjf_A 153 FDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQA 193 (281)
T ss_dssp EEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred eeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 99999976532211122 2788999999999999999864
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=4.1e-13 Score=124.31 Aligned_cols=117 Identities=12% Similarity=0.096 Sum_probs=94.4
Q ss_pred HHHHcCCCCCCEEEEECCcccHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC--CCCC
Q 048309 61 LIEKARVSKEHEVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP--KAKK 136 (288)
Q Consensus 61 l~~~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~--~~~~ 136 (288)
+...+...++.+|||+|||+|..+..+++. ...+|+++|+|+.+++.++++++..|+. +.++++|+.+++ ..++
T Consensus 93 ~a~~L~~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~--v~~~~~Da~~l~~~~~~~ 170 (464)
T 3m6w_A 93 VGVLLDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP--LAVTQAPPRALAEAFGTY 170 (464)
T ss_dssp HHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC--CEEECSCHHHHHHHHCSC
T ss_pred HHHhcCcCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe--EEEEECCHHHhhhhcccc
Confidence 345567788999999999999999999986 2369999999999999999999999984 999999998765 4679
Q ss_pred CCEEEEccch------hhh-------CHh-------hHHHHHHHHhcccccCcEEEEEeecCC
Q 048309 137 YDRIISCEMM------EAV-------GHE-------YMEEYFGCCESLLAKDGLLVLQFSSTP 179 (288)
Q Consensus 137 fD~I~~~~~l------~~~-------~~~-------~~~~~l~~~~~~LkpgG~l~~~~~~~~ 179 (288)
||+|++.... .+- +++ ....+++.+.++|||||+++.++++..
T Consensus 171 FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~~ 233 (464)
T 3m6w_A 171 FHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTFA 233 (464)
T ss_dssp EEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCC
T ss_pred CCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccCc
Confidence 9999974322 111 111 227789999999999999999887643
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=3.6e-13 Score=118.32 Aligned_cols=108 Identities=19% Similarity=0.290 Sum_probs=83.4
Q ss_pred CCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHH--cCC-CCceEEEEcccCCC-C-CCCCCCEEE
Q 048309 68 SKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNE--AGL-QDHIRLYLCDYRQL-P-KAKKYDRII 141 (288)
Q Consensus 68 ~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~--~g~-~~~v~~~~~d~~~~-~-~~~~fD~I~ 141 (288)
..+.+|||||||+|..+..++++ +..+|+++|+++.+++.|++++.. .++ .++++++.+|+.+. + ..++||+|+
T Consensus 89 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 168 (296)
T 1inl_A 89 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII 168 (296)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEE
Confidence 34579999999999999999987 567999999999999999998754 233 25899999998764 3 457899999
Q ss_pred EccchhhhCH-h--hHHHHHHHHhcccccCcEEEEEe
Q 048309 142 SCEMMEAVGH-E--YMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 142 ~~~~l~~~~~-~--~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
+.....++.+ . ...++++++.+.|+|||++++..
T Consensus 169 ~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 205 (296)
T 1inl_A 169 IDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAET 205 (296)
T ss_dssp EEC----------CCSHHHHHHHHHHEEEEEEEEEEC
T ss_pred EcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 8654321211 1 22689999999999999999864
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.42 E-value=3.6e-13 Score=117.08 Aligned_cols=107 Identities=17% Similarity=0.246 Sum_probs=85.1
Q ss_pred CCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHc--CC-CCceEEEEcccCCC-C-CCCCCCEEEE
Q 048309 69 KEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEA--GL-QDHIRLYLCDYRQL-P-KAKKYDRIIS 142 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~--g~-~~~v~~~~~d~~~~-~-~~~~fD~I~~ 142 (288)
.+.+|||||||+|..+..++++ +..+|+++|+++.+++.|++++... ++ .++++++.+|+.+. + ..++||+|++
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii~ 154 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMV 154 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEE
T ss_pred CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEEE
Confidence 5679999999999999999987 4579999999999999999987541 33 35899999998774 2 4578999999
Q ss_pred ccchhhhCHh--hHHHHHHHHhcccccCcEEEEEe
Q 048309 143 CEMMEAVGHE--YMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 143 ~~~l~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
.......+.. ...++++++.+.|+|||++++..
T Consensus 155 d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~ 189 (275)
T 1iy9_A 155 DSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQT 189 (275)
T ss_dssp SCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred CCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 7554221111 12679999999999999999864
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.42 E-value=5.3e-13 Score=121.54 Aligned_cols=107 Identities=16% Similarity=0.171 Sum_probs=86.4
Q ss_pred CCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC--CCCCCCEEEEccc
Q 048309 68 SKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP--KAKKYDRIISCEM 145 (288)
Q Consensus 68 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~--~~~~fD~I~~~~~ 145 (288)
+++.+|||+|||+|.++..+++. ++.|+++|+|+.+++.++++++.+++. .++.++|+.++. ..+.||+|++...
T Consensus 213 ~~g~~VLDlg~GtG~~sl~~a~~-ga~V~avDis~~al~~a~~n~~~ng~~--~~~~~~D~~~~l~~~~~~fD~Ii~dpP 289 (393)
T 4dmg_A 213 RPGERVLDVYSYVGGFALRAARK-GAYALAVDKDLEALGVLDQAALRLGLR--VDIRHGEALPTLRGLEGPFHHVLLDPP 289 (393)
T ss_dssp CTTCEEEEESCTTTHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHTCC--CEEEESCHHHHHHTCCCCEEEEEECCC
T ss_pred cCCCeEEEcccchhHHHHHHHHc-CCeEEEEECCHHHHHHHHHHHHHhCCC--CcEEEccHHHHHHHhcCCCCEEEECCC
Confidence 36899999999999999999986 677999999999999999999999985 356799988753 2345999999754
Q ss_pred hhhhC-------HhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 146 MEAVG-------HEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 146 l~~~~-------~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
...-+ ......+++.+.++|+|||.+++.+..
T Consensus 290 ~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s 328 (393)
T 4dmg_A 290 TLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCS 328 (393)
T ss_dssp CCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 31110 145678899999999999999976544
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=99.42 E-value=5.5e-13 Score=123.28 Aligned_cols=118 Identities=13% Similarity=0.097 Sum_probs=95.3
Q ss_pred HHHHcCCCCCCEEEEECCcccHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC--CCCC
Q 048309 61 LIEKARVSKEHEVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP--KAKK 136 (288)
Q Consensus 61 l~~~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~--~~~~ 136 (288)
+...+.+.++.+|||+|||+|..+..+++. ...+|+++|+++.+++.++++++..|+. ++.++++|..++. .+++
T Consensus 97 ~~~~L~~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~-nv~v~~~Da~~l~~~~~~~ 175 (456)
T 3m4x_A 97 VGTAAAAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVS-NAIVTNHAPAELVPHFSGF 175 (456)
T ss_dssp HHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCS-SEEEECCCHHHHHHHHTTC
T ss_pred HHHHcCCCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEeCCHHHhhhhcccc
Confidence 345567788999999999999999999986 3469999999999999999999999984 7999999998865 4579
Q ss_pred CCEEEEccch------hhh-------CH-------hhHHHHHHHHhcccccCcEEEEEeecCC
Q 048309 137 YDRIISCEMM------EAV-------GH-------EYMEEYFGCCESLLAKDGLLVLQFSSTP 179 (288)
Q Consensus 137 fD~I~~~~~l------~~~-------~~-------~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 179 (288)
||+|++...+ .+- +. .....+++.+.++|||||+++.++++..
T Consensus 176 FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~ 238 (456)
T 3m4x_A 176 FDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTFA 238 (456)
T ss_dssp EEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCC
T ss_pred CCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeecc
Confidence 9999986532 110 00 1123789999999999999999887654
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=7.5e-13 Score=119.97 Aligned_cols=112 Identities=25% Similarity=0.248 Sum_probs=87.7
Q ss_pred HHHHHcCCCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CCCCC
Q 048309 60 LLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAKKY 137 (288)
Q Consensus 60 ~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~~f 137 (288)
.++... ..++.+|||+|||+|.++..++.. ...+|+|+|+|+.+++.|+++++.+|+.++++++++|+.+++ +.++|
T Consensus 209 ~l~~~~-~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~~~f 287 (373)
T 3tm4_A 209 AMIELA-ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYVDSV 287 (373)
T ss_dssp HHHHHH-TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTCSCE
T ss_pred HHHHhh-cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCcccCCc
Confidence 344444 668889999999999999999987 223899999999999999999999998778999999999988 56899
Q ss_pred CEEEEccchhhhC------HhhHHHHHHHHhcccccCcEEEE
Q 048309 138 DRIISCEMMEAVG------HEYMEEYFGCCESLLAKDGLLVL 173 (288)
Q Consensus 138 D~I~~~~~l~~~~------~~~~~~~l~~~~~~LkpgG~l~~ 173 (288)
|+|+++..+.... ......+++.+.++| +|+.+++
T Consensus 288 D~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l-~g~~~~i 328 (373)
T 3tm4_A 288 DFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVL-EKRGVFI 328 (373)
T ss_dssp EEEEEECCCC------CCHHHHHHHHHHHHHHHE-EEEEEEE
T ss_pred CEEEECCCCCcccCcchhHHHHHHHHHHHHHHHc-CCeEEEE
Confidence 9999986643220 022477888888888 3333333
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.41 E-value=6.5e-13 Score=123.85 Aligned_cols=116 Identities=15% Similarity=0.167 Sum_probs=93.6
Q ss_pred HHcCCC--CCCEEEEECCcccHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC--CCCC
Q 048309 63 EKARVS--KEHEVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP--KAKK 136 (288)
Q Consensus 63 ~~~~~~--~~~~vLDiGcG~G~~~~~la~~--~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~--~~~~ 136 (288)
..+.+. ++.+|||+|||+|..+..+++. ....|+++|+++.+++.++++++..|++ +++++++|+.+++ ..++
T Consensus 109 ~~L~~~~~~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~-nv~~~~~D~~~~~~~~~~~ 187 (479)
T 2frx_A 109 AALFADGNAPQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGIS-NVALTHFDGRVFGAAVPEM 187 (479)
T ss_dssp HHHTTTTCCCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCC-SEEEECCCSTTHHHHSTTC
T ss_pred HHhCcccCCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEeCCHHHhhhhcccc
Confidence 445566 8899999999999999999986 2469999999999999999999999984 7999999998875 4578
Q ss_pred CCEEEEccc------hhhhC-------Hh-------hHHHHHHHHhcccccCcEEEEEeecCC
Q 048309 137 YDRIISCEM------MEAVG-------HE-------YMEEYFGCCESLLAKDGLLVLQFSSTP 179 (288)
Q Consensus 137 fD~I~~~~~------l~~~~-------~~-------~~~~~l~~~~~~LkpgG~l~~~~~~~~ 179 (288)
||+|++... +.+.+ ++ ....+++++.++|||||++++++++..
T Consensus 188 fD~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~~ 250 (479)
T 2frx_A 188 FDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLN 250 (479)
T ss_dssp EEEEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCS
T ss_pred CCEEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccCC
Confidence 999998422 22211 11 135689999999999999999887643
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.41 E-value=4.5e-13 Score=110.17 Aligned_cols=111 Identities=20% Similarity=0.251 Sum_probs=83.6
Q ss_pred HHHHHHHHHcC-CCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-C
Q 048309 56 RKHSLLIEKAR-VSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-K 133 (288)
Q Consensus 56 ~~~~~l~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~ 133 (288)
-++..+.+... .+++.+|||+|||+|.++..+++. +.+|+|+|+++.. .+ .+++++++|+.+.+ .
T Consensus 11 ~KL~ei~~~~~~~~~g~~VLDlG~G~G~~s~~la~~-~~~V~gvD~~~~~-----------~~-~~v~~~~~D~~~~~~~ 77 (191)
T 3dou_A 11 FKLEFLLDRYRVVRKGDAVIEIGSSPGGWTQVLNSL-ARKIISIDLQEME-----------EI-AGVRFIRCDIFKETIF 77 (191)
T ss_dssp HHHHHHHHHHCCSCTTCEEEEESCTTCHHHHHHTTT-CSEEEEEESSCCC-----------CC-TTCEEEECCTTSSSHH
T ss_pred HHHHHHHHHcCCCCCCCEEEEEeecCCHHHHHHHHc-CCcEEEEeccccc-----------cC-CCeEEEEccccCHHHH
Confidence 35566666665 467899999999999999999987 7899999999741 23 47999999998864 1
Q ss_pred -------C----CCCCEEEEccchh--------hh-CHhhHHHHHHHHhcccccCcEEEEEeecCC
Q 048309 134 -------A----KKYDRIISCEMME--------AV-GHEYMEEYFGCCESLLAKDGLLVLQFSSTP 179 (288)
Q Consensus 134 -------~----~~fD~I~~~~~l~--------~~-~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 179 (288)
. ++||+|++..... +. .......+++.+.++|||||.|++..+..+
T Consensus 78 ~~~~~~~~~~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~~ 143 (191)
T 3dou_A 78 DDIDRALREEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGD 143 (191)
T ss_dssp HHHHHHHHHHTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECST
T ss_pred HHHHHHhhcccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCCC
Confidence 1 4999999965321 11 112346788999999999999998766433
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=1.4e-12 Score=109.59 Aligned_cols=102 Identities=16% Similarity=0.116 Sum_probs=88.4
Q ss_pred CCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCEEEEccchh
Q 048309 68 SKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMME 147 (288)
Q Consensus 68 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~~~~~l~ 147 (288)
.++.+|||||||+|-++..+. ++.+|+|+|+++.+++.+++++...+. +..+.++|....++++++|+|++.-+++
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~--~~~~y~a~DId~~~i~~ar~~~~~~g~--~~~~~v~D~~~~~~~~~~DvvLllk~lh 179 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER--GIASVWGCDIHQGLGDVITPFAREKDW--DFTFALQDVLCAPPAEAGDLALIFKLLP 179 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT--TCSEEEEEESBHHHHHHHHHHHHHTTC--EEEEEECCTTTSCCCCBCSEEEEESCHH
T ss_pred CCCCeEEEecCCccHHHHHhc--cCCeEEEEeCCHHHHHHHHHHHHhcCC--CceEEEeecccCCCCCCcchHHHHHHHH
Confidence 467899999999999999887 578999999999999999999988884 6899999999888778999999999999
Q ss_pred hhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 148 AVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 148 ~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
|+..+.....+ ++.+.|+++|+++..
T Consensus 180 ~LE~q~~~~~~-~ll~aL~~~~vvVsf 205 (253)
T 3frh_A 180 LLEREQAGSAM-ALLQSLNTPRMAVSF 205 (253)
T ss_dssp HHHHHSTTHHH-HHHHHCBCSEEEEEE
T ss_pred HhhhhchhhHH-HHHHHhcCCCEEEEc
Confidence 99555555555 888899999877753
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=4.1e-13 Score=122.05 Aligned_cols=107 Identities=21% Similarity=0.201 Sum_probs=89.9
Q ss_pred CCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-----CCCCCCEEEEc
Q 048309 69 KEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-----KAKKYDRIISC 143 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-----~~~~fD~I~~~ 143 (288)
++.+|||+|||+|.++..+++. ..+|+|+|+|+.+++.|+++++.++++ +++++++|+.++. ..++||+|++.
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~n~~~n~~~-~~~~~~~d~~~~~~~~~~~~~~fD~Ii~d 286 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG-FREVVAVDSSAEALRRAEENARLNGLG-NVRVLEANAFDLLRRLEKEGERFDLVVLD 286 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH-EEEEEEEESCHHHHHHHHHHHHHTTCT-TEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeEEEeeeccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCC-CceEEECCHHHHHHHHHhcCCCeeEEEEC
Confidence 6789999999999999999987 679999999999999999999999985 5999999998754 15789999996
Q ss_pred cchhhhC-------HhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 144 EMMEAVG-------HEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 144 ~~l~~~~-------~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
......+ ......++..+.++|+|||.+++.+..
T Consensus 287 pP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 327 (382)
T 1wxx_A 287 PPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCS 327 (382)
T ss_dssp CCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 5331111 155678999999999999999987654
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.40 E-value=1.2e-12 Score=117.30 Aligned_cols=119 Identities=15% Similarity=0.105 Sum_probs=94.9
Q ss_pred HHHHHHHHHc-CCCCCCEEEEECCcccHHHHHHHHc-cC-----CEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEccc
Q 048309 56 RKHSLLIEKA-RVSKEHEVLEIGCGWGTFAIEVVRQ-TG-----CNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDY 128 (288)
Q Consensus 56 ~~~~~l~~~~-~~~~~~~vLDiGcG~G~~~~~la~~-~~-----~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~ 128 (288)
..+..++..+ ...++.+|||+|||+|.++..+++. +. .+++|+|+++.+++.|+.++...|+ ++.++++|.
T Consensus 116 ~~~~~ll~~l~~~~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~--~~~i~~~D~ 193 (344)
T 2f8l_A 116 FIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ--KMTLLHQDG 193 (344)
T ss_dssp HHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC--CCEEEESCT
T ss_pred HHHHHHHHHhcCCCCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCC--CceEEECCC
Confidence 3345555554 4456789999999999999998876 32 6899999999999999999988887 589999998
Q ss_pred CCCCCCCCCCEEEEccchhhhCHhhH----------------HHHHHHHhcccccCcEEEEEee
Q 048309 129 RQLPKAKKYDRIISCEMMEAVGHEYM----------------EEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 129 ~~~~~~~~fD~I~~~~~l~~~~~~~~----------------~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
......++||+|+++..+.+++..+. ..+++++.+.|+|||++++...
T Consensus 194 l~~~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p 257 (344)
T 2f8l_A 194 LANLLVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVP 257 (344)
T ss_dssp TSCCCCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCccccCCccEEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEEC
Confidence 87555678999999988766532221 2689999999999999988653
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=5.9e-14 Score=121.98 Aligned_cols=117 Identities=14% Similarity=0.126 Sum_probs=83.6
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHH-HHcCCCCceEEE--EcccCCCC
Q 048309 56 RKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKV-NEAGLQDHIRLY--LCDYRQLP 132 (288)
Q Consensus 56 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~-~~~g~~~~v~~~--~~d~~~~~ 132 (288)
.++..+.+...+.++.+|||+|||+|.++..+++. .+|+|+|+++ |+..+++.. .......++.++ ++|+.+++
T Consensus 69 ~KL~~i~~~~~~~~g~~VLDlGcGtG~~s~~la~~--~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~ 145 (276)
T 2wa2_A 69 AKLAWIDERGGVELKGTVVDLGCGRGSWSYYAASQ--PNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDVTKME 145 (276)
T ss_dssp HHHHHHHHTTSCCCCEEEEEESCTTCHHHHHHHTS--TTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCGGGCC
T ss_pred HHHHHHHHcCCCCCCCEEEEeccCCCHHHHHHHHc--CCEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCcHhhCC
Confidence 34566666655678899999999999999999986 5899999998 533322110 000111168999 99999887
Q ss_pred CCCCCCEEEEccchhhhCH---hhH--HHHHHHHhcccccCc--EEEEEeec
Q 048309 133 KAKKYDRIISCEMMEAVGH---EYM--EEYFGCCESLLAKDG--LLVLQFSS 177 (288)
Q Consensus 133 ~~~~fD~I~~~~~l~~~~~---~~~--~~~l~~~~~~LkpgG--~l~~~~~~ 177 (288)
+++||+|+|..+ ++.+. +.. ..+++.+.++||||| .+++..+.
T Consensus 146 -~~~fD~Vvsd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~ 195 (276)
T 2wa2_A 146 -PFQADTVLCDIG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLN 195 (276)
T ss_dssp -CCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESC
T ss_pred -CCCcCEEEECCC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCC
Confidence 578999999876 33211 111 137899999999999 99987665
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=99.40 E-value=1.7e-13 Score=110.76 Aligned_cols=157 Identities=15% Similarity=0.101 Sum_probs=106.7
Q ss_pred HcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC----CCCCCCE
Q 048309 64 KARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP----KAKKYDR 139 (288)
Q Consensus 64 ~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~----~~~~fD~ 139 (288)
.+++.+|.+|||+|||. +++|+|+.|++.|+++... +++++++|+.+++ ++++||+
T Consensus 7 ~~g~~~g~~vL~~~~g~---------------v~vD~s~~ml~~a~~~~~~-----~~~~~~~d~~~~~~~~~~~~~fD~ 66 (176)
T 2ld4_A 7 DFGISAGQFVAVVWDKS---------------SPVEALKGLVDKLQALTGN-----EGRVSVENIKQLLQSAHKESSFDI 66 (176)
T ss_dssp TTTCCTTSEEEEEECTT---------------SCHHHHHHHHHHHHHHTTT-----TSEEEEEEGGGGGGGCCCSSCEEE
T ss_pred ccCCCCCCEEEEecCCc---------------eeeeCCHHHHHHHHHhccc-----CcEEEEechhcCccccCCCCCEeE
Confidence 34678999999999986 2399999999999987532 4899999998876 3678999
Q ss_pred EEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCCCcccccccCchhhHhhhccCCCCCCCHHHHHHHHHHcCCh
Q 048309 140 IISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPDARYNEYRLSSDFIKEYIFPGGCLPSLSRITSAMAAASSL 219 (288)
Q Consensus 140 I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~ 219 (288)
|++..+++|+. .+...++++++++|||||++++........ . ......+..++.+.+.++ ||
T Consensus 67 V~~~~~l~~~~-~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~------~----------~~~~~~~~~~~~~~l~~a-Gf 128 (176)
T 2ld4_A 67 ILSGLVPGSTT-LHSAEILAEIARILRPGGCLFLKEPVETAV------D----------NNSKVKTASKLCSALTLS-GL 128 (176)
T ss_dssp EEECCSTTCCC-CCCHHHHHHHHHHEEEEEEEEEEEEEESSS------C----------SSSSSCCHHHHHHHHHHT-TC
T ss_pred EEECChhhhcc-cCHHHHHHHHHHHCCCCEEEEEEccccccc------c----------cccccCCHHHHHHHHHHC-CC
Confidence 99999999983 345899999999999999999954321110 0 011223566777776665 33
Q ss_pred HHHHhh---cCChHHHHHHHHHHHHHHhhcccCCccEEEEEEEcCCC
Q 048309 220 SKILAL---GFNEKFIWTWEYYFDYSAAGFKPRTLGNYQIVLSRPGN 263 (288)
Q Consensus 220 ~~~~~~---gf~~~~~~~w~~~~~~~~~~f~~g~~~~~~~~~~k~~~ 263 (288)
..+... .+.....+.|. ...++....+....++++||.-
T Consensus 129 i~~~~~~~~~~~~~~~~~~~-----~~~g~~~~~~~~~~~~a~Kp~~ 170 (176)
T 2ld4_A 129 VEVKELQREPLTPEEVQSVR-----EHLGHESDNLLFVQITGKKPNF 170 (176)
T ss_dssp EEEEEEEEECCCHHHHHHHH-----HHTCCCCSSEEEEEEEEECCCS
T ss_pred cEeecCcccCCCHHHHHHHH-----HHhcccCCceEEEEEeccCCcc
Confidence 111111 11222333332 2345544556688899999853
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=9.9e-13 Score=117.51 Aligned_cols=107 Identities=16% Similarity=0.241 Sum_probs=90.2
Q ss_pred HHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCE
Q 048309 60 LLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDR 139 (288)
Q Consensus 60 ~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~ 139 (288)
.+++.+ .++.+|||+|||+|.++.. ++ .+.+|+|+|+|+.+++.++++++.+++.++++++++|+.++. ++||+
T Consensus 188 ~i~~~~--~~~~~VLDlg~G~G~~~l~-a~-~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~--~~fD~ 261 (336)
T 2yx1_A 188 RIMKKV--SLNDVVVDMFAGVGPFSIA-CK-NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD--VKGNR 261 (336)
T ss_dssp HHHHHC--CTTCEEEETTCTTSHHHHH-TT-TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC--CCEEE
T ss_pred HHHHhc--CCCCEEEEccCccCHHHHh-cc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc--CCCcE
Confidence 344443 4788999999999999999 87 478999999999999999999999998678999999999876 88999
Q ss_pred EEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecC
Q 048309 140 IISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSST 178 (288)
Q Consensus 140 I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 178 (288)
|++..... ...++..+.++|+|||.+++.++..
T Consensus 262 Vi~dpP~~------~~~~l~~~~~~L~~gG~l~~~~~~~ 294 (336)
T 2yx1_A 262 VIMNLPKF------AHKFIDKALDIVEEGGVIHYYTIGK 294 (336)
T ss_dssp EEECCTTT------GGGGHHHHHHHEEEEEEEEEEEEES
T ss_pred EEECCcHh------HHHHHHHHHHHcCCCCEEEEEEeec
Confidence 99964322 2377888899999999999877653
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=99.39 E-value=7.2e-14 Score=120.75 Aligned_cols=117 Identities=16% Similarity=0.146 Sum_probs=83.3
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHH-HHcCCCCceEEE--EcccCCCC
Q 048309 56 RKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKV-NEAGLQDHIRLY--LCDYRQLP 132 (288)
Q Consensus 56 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~-~~~g~~~~v~~~--~~d~~~~~ 132 (288)
.++..+.+...+.++.+|||+|||+|.++..+++. .+|+|||+++ ++..+++.. .......++.++ ++|+.+++
T Consensus 61 ~KL~~i~~~~~~~~g~~VLDlGcGtG~~s~~la~~--~~V~gvD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~ 137 (265)
T 2oxt_A 61 AKLAWMEERGYVELTGRVVDLGCGRGGWSYYAASR--PHVMDVRAYT-LGVGGHEVPRITESYGWNIVKFKSRVDIHTLP 137 (265)
T ss_dssp HHHHHHHHHTSCCCCEEEEEESCTTSHHHHHHHTS--TTEEEEEEEC-CCCSSCCCCCCCCBTTGGGEEEECSCCTTTSC
T ss_pred HHHHHHHHcCCCCCCCEEEEeCcCCCHHHHHHHHc--CcEEEEECch-hhhhhhhhhhhhhccCCCeEEEecccCHhHCC
Confidence 44566666655678899999999999999999886 6899999998 532221110 000011168899 99999886
Q ss_pred CCCCCCEEEEccchhhhCH---hhH--HHHHHHHhcccccCc--EEEEEeec
Q 048309 133 KAKKYDRIISCEMMEAVGH---EYM--EEYFGCCESLLAKDG--LLVLQFSS 177 (288)
Q Consensus 133 ~~~~fD~I~~~~~l~~~~~---~~~--~~~l~~~~~~LkpgG--~l~~~~~~ 177 (288)
+++||+|+|..+ ++.+. +.. ..+++.+.++|+||| .|++..+.
T Consensus 138 -~~~fD~V~sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~ 187 (265)
T 2oxt_A 138 -VERTDVIMCDVG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLC 187 (265)
T ss_dssp -CCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred -CCCCcEEEEeCc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCC
Confidence 579999999866 33211 111 137899999999999 99997765
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.39 E-value=2.5e-12 Score=113.05 Aligned_cols=110 Identities=18% Similarity=0.263 Sum_probs=84.5
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCC
Q 048309 56 RKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAK 135 (288)
Q Consensus 56 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~ 135 (288)
.....+++.+.+.++.+|||||||+|.++..+++. +.+|+|+|+++.+++.++++++..++ ++++++++|+.+++. .
T Consensus 29 ~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~La~~-~~~v~~vDi~~~~~~~a~~~~~~~~~-~~v~~~~~D~~~~~~-~ 105 (299)
T 2h1r_A 29 GILDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPL-AKKVITIDIDSRMISEVKKRCLYEGY-NNLEVYEGDAIKTVF-P 105 (299)
T ss_dssp HHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHTTT-SSEEEEECSCHHHHHHHHHHHHHTTC-CCEEC----CCSSCC-C
T ss_pred HHHHHHHHhcCCCCcCEEEEEcCcCcHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHcCC-CceEEEECchhhCCc-c
Confidence 34567777888888999999999999999999986 67999999999999999999987777 589999999998774 4
Q ss_pred CCCEEEEccchhhhCHhhHHHHH---------------HHHhcccccCc
Q 048309 136 KYDRIISCEMMEAVGHEYMEEYF---------------GCCESLLAKDG 169 (288)
Q Consensus 136 ~fD~I~~~~~l~~~~~~~~~~~l---------------~~~~~~LkpgG 169 (288)
+||+|+++...+.. .+....++ +.+.++++++|
T Consensus 106 ~~D~Vv~n~py~~~-~~~~~~ll~~~~~~~~~~l~~Q~e~a~rlla~~G 153 (299)
T 2h1r_A 106 KFDVCTANIPYKIS-SPLIFKLISHRPLFKCAVLMFQKEFAERMLANVG 153 (299)
T ss_dssp CCSEEEEECCGGGH-HHHHHHHHHCSSCCSEEEEEEEHHHHHHHTCCTT
T ss_pred cCCEEEEcCCcccc-cHHHHHHHhcCCccceeeehHHHHHHHHHhcCCC
Confidence 89999998765543 22333444 34567788877
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=99.38 E-value=2.2e-12 Score=119.01 Aligned_cols=118 Identities=12% Similarity=0.132 Sum_probs=94.6
Q ss_pred HHHHHcCCCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC---CCC
Q 048309 60 LLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP---KAK 135 (288)
Q Consensus 60 ~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~---~~~ 135 (288)
.+...+...++.+|||+|||+|..+..+++. ++.+|+++|+++.+++.++++++..|+ +++++++|+.+++ .++
T Consensus 237 ~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~--~~~~~~~D~~~~~~~~~~~ 314 (429)
T 1sqg_A 237 GCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGM--KATVKQGDGRYPSQWCGEQ 314 (429)
T ss_dssp THHHHHCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTC--CCEEEECCTTCTHHHHTTC
T ss_pred HHHHHcCCCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCC--CeEEEeCchhhchhhcccC
Confidence 3445567788999999999999999999987 447999999999999999999999887 4899999998875 347
Q ss_pred CCCEEEEcc------chhhhCH-------hh-------HHHHHHHHhcccccCcEEEEEeecCC
Q 048309 136 KYDRIISCE------MMEAVGH-------EY-------MEEYFGCCESLLAKDGLLVLQFSSTP 179 (288)
Q Consensus 136 ~fD~I~~~~------~l~~~~~-------~~-------~~~~l~~~~~~LkpgG~l~~~~~~~~ 179 (288)
+||+|++.. ++.+.+. ++ ...+++++.++|||||++++++++..
T Consensus 315 ~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~~ 378 (429)
T 1sqg_A 315 QFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVL 378 (429)
T ss_dssp CEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCC
T ss_pred CCCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 899999743 2222211 11 25789999999999999999886643
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=8.5e-12 Score=115.19 Aligned_cols=115 Identities=16% Similarity=0.260 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCC-
Q 048309 53 AQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQL- 131 (288)
Q Consensus 53 a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~- 131 (288)
.....+..+++.+...++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++++.++++ +++++++|+.+.
T Consensus 270 ~~e~l~~~~~~~l~~~~~~~VLDlgcG~G~~~~~la~~-~~~V~gvD~s~~al~~A~~n~~~~~~~-~v~f~~~d~~~~l 347 (433)
T 1uwv_A 270 VNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQ-AASVVGVEGVPALVEKGQQNARLNGLQ-NVTFYHENLEEDV 347 (433)
T ss_dssp HHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCTTSCC
T ss_pred HHHHHHHHHHHhhcCCCCCEEEECCCCCCHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEECCHHHHh
Confidence 44556677788888778889999999999999999987 779999999999999999999999985 899999999883
Q ss_pred ---C-CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 132 ---P-KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 132 ---~-~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
+ ..++||+|+++...... .++++.+. .++|++.+++++
T Consensus 348 ~~~~~~~~~fD~Vv~dPPr~g~-----~~~~~~l~-~~~p~~ivyvsc 389 (433)
T 1uwv_A 348 TKQPWAKNGFDKVLLDPARAGA-----AGVMQQII-KLEPIRIVYVSC 389 (433)
T ss_dssp SSSGGGTTCCSEEEECCCTTCC-----HHHHHHHH-HHCCSEEEEEES
T ss_pred hhhhhhcCCCCEEEECCCCccH-----HHHHHHHH-hcCCCeEEEEEC
Confidence 2 34689999997654433 23444443 378999888753
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.35 E-value=1e-11 Score=113.10 Aligned_cols=120 Identities=17% Similarity=0.202 Sum_probs=95.3
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc-cC--------------------------------------CEEEE
Q 048309 57 KHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-TG--------------------------------------CNYTG 97 (288)
Q Consensus 57 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~--------------------------------------~~v~g 97 (288)
....++...+..++..|||++||+|.+++.++.. .. .+|+|
T Consensus 189 lAa~ll~l~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~G 268 (393)
T 3k0b_A 189 MAAALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIG 268 (393)
T ss_dssp HHHHHHHHSCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEE
T ss_pred HHHHHHHHhCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEE
Confidence 3455677778888899999999999999888765 21 45999
Q ss_pred EcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCEEEEccchhh-h-CHhhHHHHHHHHhccccc--CcEEEE
Q 048309 98 ITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMMEA-V-GHEYMEEYFGCCESLLAK--DGLLVL 173 (288)
Q Consensus 98 iD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~~~~~l~~-~-~~~~~~~~l~~~~~~Lkp--gG~l~~ 173 (288)
+|+++.+++.|+++++.+|+.++++++++|+.+++...+||+|+++..+.. + ..++...+++.+.+.|++ ||.+++
T Consensus 269 vDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~i 348 (393)
T 3k0b_A 269 GDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTEDEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTWSVYV 348 (393)
T ss_dssp EESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCCCCCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTTCEEEE
T ss_pred EECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCCCCCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCCCEEEE
Confidence 999999999999999999997789999999999886679999999966421 2 114456666666666665 888887
Q ss_pred Eee
Q 048309 174 QFS 176 (288)
Q Consensus 174 ~~~ 176 (288)
.+.
T Consensus 349 it~ 351 (393)
T 3k0b_A 349 LTS 351 (393)
T ss_dssp EEC
T ss_pred EEC
Confidence 543
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.9e-11 Score=110.81 Aligned_cols=120 Identities=16% Similarity=0.216 Sum_probs=96.9
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc-cC--------------------------------------CEEEE
Q 048309 57 KHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-TG--------------------------------------CNYTG 97 (288)
Q Consensus 57 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~--------------------------------------~~v~g 97 (288)
....++......++..|+|.+||+|.+++.++.. .. .+|+|
T Consensus 182 LAaall~l~~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~G 261 (384)
T 3ldg_A 182 MAAAIILLSNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISG 261 (384)
T ss_dssp HHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEE
T ss_pred HHHHHHHHhCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEE
Confidence 3445677777788899999999999999988864 22 45999
Q ss_pred EcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCEEEEccchhh-h-CHhhHHHHHHHHhccccc--CcEEEE
Q 048309 98 ITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMMEA-V-GHEYMEEYFGCCESLLAK--DGLLVL 173 (288)
Q Consensus 98 iD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~~~~~l~~-~-~~~~~~~~l~~~~~~Lkp--gG~l~~ 173 (288)
+|+++.+++.|+++++.+|+.++++++++|+.+++...+||+|+++..+.. + ..++...+++.+.+.||+ ||.+++
T Consensus 262 vDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~~~~i 341 (384)
T 3ldg_A 262 FDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTNKINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTWSQFI 341 (384)
T ss_dssp EESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCCCCCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTSEEEE
T ss_pred EECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCccCCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCcEEEE
Confidence 999999999999999999998789999999999885569999999876532 2 235667777777777766 888888
Q ss_pred Eee
Q 048309 174 QFS 176 (288)
Q Consensus 174 ~~~ 176 (288)
.+.
T Consensus 342 it~ 344 (384)
T 3ldg_A 342 LTN 344 (384)
T ss_dssp EES
T ss_pred EEC
Confidence 543
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.34 E-value=3.2e-13 Score=114.50 Aligned_cols=108 Identities=10% Similarity=0.108 Sum_probs=76.3
Q ss_pred HHHHHHHHcCCC-CCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEE-EcccCCCC--
Q 048309 57 KHSLLIEKARVS-KEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLY-LCDYRQLP-- 132 (288)
Q Consensus 57 ~~~~l~~~~~~~-~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~-~~d~~~~~-- 132 (288)
++..+++.+... ++.+|||||||+|.++..+++....+|+|+|+|+.|++.++++.. ++... ..++....
T Consensus 24 kL~~~L~~~~~~~~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~~~~------~~~~~~~~~~~~~~~~ 97 (232)
T 3opn_A 24 KLEKALKEFHLEINGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRSDE------RVVVMEQFNFRNAVLA 97 (232)
T ss_dssp HHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHHTCT------TEEEECSCCGGGCCGG
T ss_pred HHHHHHHHcCCCCCCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHHhCc------cccccccceEEEeCHh
Confidence 566777777654 467999999999999999998732599999999999998766432 22211 11222111
Q ss_pred -C-CCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 133 -K-AKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 133 -~-~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
. ...+|.+.+..++.++ ..+++++.++|||||.+++..
T Consensus 98 ~~~~~~~d~~~~D~v~~~l-----~~~l~~i~rvLkpgG~lv~~~ 137 (232)
T 3opn_A 98 DFEQGRPSFTSIDVSFISL-----DLILPPLYEILEKNGEVAALI 137 (232)
T ss_dssp GCCSCCCSEEEECCSSSCG-----GGTHHHHHHHSCTTCEEEEEE
T ss_pred HcCcCCCCEEEEEEEhhhH-----HHHHHHHHHhccCCCEEEEEE
Confidence 1 1236777666666554 678999999999999999843
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.34 E-value=3e-12 Score=104.90 Aligned_cols=108 Identities=16% Similarity=0.145 Sum_probs=78.7
Q ss_pred HHHHHHHcC-CCCCCEEEEECCcccHHHHHHHHc-cC---------CEEEEEcCCHHHHHHHHHHHHHcCCCCceEEE-E
Q 048309 58 HSLLIEKAR-VSKEHEVLEIGCGWGTFAIEVVRQ-TG---------CNYTGITLSAEQMKYAEMKVNEAGLQDHIRLY-L 125 (288)
Q Consensus 58 ~~~l~~~~~-~~~~~~vLDiGcG~G~~~~~la~~-~~---------~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~-~ 125 (288)
+..+.+... +.++.+|||+|||+|.++..+++. +. .+|+|+|+|+.. .+ .+++++ .
T Consensus 10 l~~l~~~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-----------~~-~~~~~~~~ 77 (196)
T 2nyu_A 10 LLEVNERHQILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-----------PL-EGATFLCP 77 (196)
T ss_dssp HHHHHHHHCCCCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-----------CC-TTCEEECS
T ss_pred HHHHHHhcCCCCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-----------cC-CCCeEEEe
Confidence 334444443 567899999999999999999987 32 799999999831 22 368899 8
Q ss_pred cccCCCC---------CCCCCCEEEEccchhhhCH--hhH-------HHHHHHHhcccccCcEEEEEeec
Q 048309 126 CDYRQLP---------KAKKYDRIISCEMMEAVGH--EYM-------EEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 126 ~d~~~~~---------~~~~fD~I~~~~~l~~~~~--~~~-------~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
+|+.+.. .+++||+|++..+++.... .+. ..+++++.++|+|||.+++.++.
T Consensus 78 ~d~~~~~~~~~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 147 (196)
T 2nyu_A 78 ADVTDPRTSQRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWA 147 (196)
T ss_dssp CCTTSHHHHHHHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred ccCCCHHHHHHHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecC
Confidence 9887642 2358999999654432100 111 57899999999999999997654
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=1.7e-11 Score=112.64 Aligned_cols=106 Identities=14% Similarity=0.203 Sum_probs=85.0
Q ss_pred HHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCC
Q 048309 58 HSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKY 137 (288)
Q Consensus 58 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~f 137 (288)
...+++ ..++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++++.+++. ++++++|+.++... +|
T Consensus 282 ~~~~~~---~~~~~~VLDlgcG~G~~sl~la~~-~~~V~gvD~s~~ai~~A~~n~~~ngl~--v~~~~~d~~~~~~~-~f 354 (425)
T 2jjq_A 282 VRKVSE---LVEGEKILDMYSGVGTFGIYLAKR-GFNVKGFDSNEFAIEMARRNVEINNVD--AEFEVASDREVSVK-GF 354 (425)
T ss_dssp HHHHHH---HCCSSEEEEETCTTTHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHTCC--EEEEECCTTTCCCT-TC
T ss_pred HHHhhc---cCCCCEEEEeeccchHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHcCCc--EEEEECChHHcCcc-CC
Confidence 344444 457789999999999999999986 679999999999999999999998884 99999999987643 89
Q ss_pred CEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 138 DRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 138 D~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
|+|++........ ..+++.+. .|+|+|.+++++
T Consensus 355 D~Vv~dPPr~g~~----~~~~~~l~-~l~p~givyvsc 387 (425)
T 2jjq_A 355 DTVIVDPPRAGLH----PRLVKRLN-REKPGVIVYVSC 387 (425)
T ss_dssp SEEEECCCTTCSC----HHHHHHHH-HHCCSEEEEEES
T ss_pred CEEEEcCCccchH----HHHHHHHH-hcCCCcEEEEEC
Confidence 9999976543331 23444443 489999999864
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=99.34 E-value=7.7e-12 Score=113.66 Aligned_cols=120 Identities=18% Similarity=0.187 Sum_probs=96.4
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc-cC--------------------------------------CEEEE
Q 048309 57 KHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-TG--------------------------------------CNYTG 97 (288)
Q Consensus 57 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~--------------------------------------~~v~g 97 (288)
....++......++.+|||++||+|.+++.++.. .. .+|+|
T Consensus 183 lAa~ll~~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~G 262 (385)
T 3ldu_A 183 LAAGLIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYG 262 (385)
T ss_dssp HHHHHHHTSCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEE
T ss_pred HHHHHHHhhCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEE
Confidence 4455677777788899999999999999998775 21 47999
Q ss_pred EcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCEEEEccchh-hhC-HhhHHHHHHHHhccccc--CcEEEE
Q 048309 98 ITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMME-AVG-HEYMEEYFGCCESLLAK--DGLLVL 173 (288)
Q Consensus 98 iD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~~~~~l~-~~~-~~~~~~~l~~~~~~Lkp--gG~l~~ 173 (288)
+|+++.+++.|+++++.+|+.+++++.++|+.+++.+.+||+|+++..+. .++ .++...+++++.+.|++ ||.+++
T Consensus 263 vDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~i 342 (385)
T 3ldu_A 263 YDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSEDEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWSYYL 342 (385)
T ss_dssp EESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCCSCBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSCEEEE
T ss_pred EECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCcCCCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCCEEEE
Confidence 99999999999999999998778999999999988667999999987753 221 24566777777777776 888777
Q ss_pred Eee
Q 048309 174 QFS 176 (288)
Q Consensus 174 ~~~ 176 (288)
.+.
T Consensus 343 it~ 345 (385)
T 3ldu_A 343 ITS 345 (385)
T ss_dssp EES
T ss_pred EEC
Confidence 543
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=99.33 E-value=1.3e-12 Score=112.76 Aligned_cols=98 Identities=12% Similarity=-0.028 Sum_probs=80.5
Q ss_pred CCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHc--CC-CCceEEEEcccCCCCCCCCCCEEEEcc
Q 048309 68 SKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEA--GL-QDHIRLYLCDYRQLPKAKKYDRIISCE 144 (288)
Q Consensus 68 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~--g~-~~~v~~~~~d~~~~~~~~~fD~I~~~~ 144 (288)
..+.+|||||||+|..+..++++ +.+|+++|+++.+++.|++++... ++ .++++++.+|..++. ++||+|++..
T Consensus 71 ~~~~~VL~iG~G~G~~~~~ll~~-~~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~--~~fD~Ii~d~ 147 (262)
T 2cmg_A 71 KELKEVLIVDGFDLELAHQLFKY-DTHIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI--KKYDLIFCLQ 147 (262)
T ss_dssp SCCCEEEEESSCCHHHHHHHTTS-SCEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC--CCEEEEEESS
T ss_pred CCCCEEEEEeCCcCHHHHHHHhC-CCEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH--hhCCEEEECC
Confidence 45679999999999999999887 489999999999999998765321 11 247999999998876 7899999873
Q ss_pred chhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 145 MMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 145 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
. ++..+++.+.+.|+|||++++..
T Consensus 148 ~-------dp~~~~~~~~~~L~pgG~lv~~~ 171 (262)
T 2cmg_A 148 E-------PDIHRIDGLKRMLKEDGVFISVA 171 (262)
T ss_dssp C-------CCHHHHHHHHTTEEEEEEEEEEE
T ss_pred C-------ChHHHHHHHHHhcCCCcEEEEEc
Confidence 2 22348999999999999999854
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=2.4e-11 Score=106.28 Aligned_cols=89 Identities=18% Similarity=0.243 Sum_probs=77.5
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CC
Q 048309 56 RKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KA 134 (288)
Q Consensus 56 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~ 134 (288)
..+..+++.+.+.++.+|||||||+|.++..+++. +.+|+++|+++.+++.+++++... ++++++++|+.+++ +.
T Consensus 37 ~i~~~Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~-~~~V~aVEid~~li~~a~~~~~~~---~~v~vi~gD~l~~~~~~ 112 (295)
T 3gru_A 37 NFVNKAVESANLTKDDVVLEIGLGKGILTEELAKN-AKKVYVIEIDKSLEPYANKLKELY---NNIEIIWGDALKVDLNK 112 (295)
T ss_dssp HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEEESCGGGHHHHHHHHHHC---SSEEEEESCTTTSCGGG
T ss_pred HHHHHHHHhcCCCCcCEEEEECCCchHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhccC---CCeEEEECchhhCCccc
Confidence 45677888888889999999999999999999997 779999999999999999998743 48999999999987 55
Q ss_pred CCCCEEEEccchhh
Q 048309 135 KKYDRIISCEMMEA 148 (288)
Q Consensus 135 ~~fD~I~~~~~l~~ 148 (288)
.+||+|+++..++.
T Consensus 113 ~~fD~Iv~NlPy~i 126 (295)
T 3gru_A 113 LDFNKVVANLPYQI 126 (295)
T ss_dssp SCCSEEEEECCGGG
T ss_pred CCccEEEEeCcccc
Confidence 68999998866543
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=1.2e-12 Score=115.24 Aligned_cols=116 Identities=16% Similarity=0.210 Sum_probs=80.6
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcC----CHHHHHHHHHHHHHcCCCCceEEEEc-ccCCC
Q 048309 57 KHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITL----SAEQMKYAEMKVNEAGLQDHIRLYLC-DYRQL 131 (288)
Q Consensus 57 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~----s~~~~~~a~~~~~~~g~~~~v~~~~~-d~~~~ 131 (288)
++..+.+...++++.+|||+|||+|.++..+++. .+|+|+|+ ++.+++... .+..+. ++++++++ |+..+
T Consensus 70 KL~~i~~~~~~~~g~~VLDlGcG~G~~s~~la~~--~~V~gvD~~~~~~~~~~~~~~--~~~~~~-~~v~~~~~~D~~~l 144 (305)
T 2p41_A 70 KLRWFVERNLVTPEGKVVDLGCGRGGWSYYCGGL--KNVREVKGLTKGGPGHEEPIP--MSTYGW-NLVRLQSGVDVFFI 144 (305)
T ss_dssp HHHHHHHTTSSCCCEEEEEETCTTSHHHHHHHTS--TTEEEEEEECCCSTTSCCCCC--CCSTTG-GGEEEECSCCTTTS
T ss_pred HHHHHHHcCCCCCCCEEEEEcCCCCHHHHHHHhc--CCEEEEeccccCchhHHHHHH--hhhcCC-CCeEEEeccccccC
Confidence 3445566544567889999999999999999986 48999999 554432111 111121 46899999 88877
Q ss_pred CCCCCCCEEEEccchh---hhC-HhhHHHHHHHHhcccccCcEEEEEeecC
Q 048309 132 PKAKKYDRIISCEMME---AVG-HEYMEEYFGCCESLLAKDGLLVLQFSST 178 (288)
Q Consensus 132 ~~~~~fD~I~~~~~l~---~~~-~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 178 (288)
+ .++||+|+|..++. +.. ......++..+.++|||||.|++..+..
T Consensus 145 ~-~~~fD~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~~~ 194 (305)
T 2p41_A 145 P-PERCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNP 194 (305)
T ss_dssp C-CCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCC
T ss_pred C-cCCCCEEEECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence 5 46899999976642 221 0111257889999999999999865543
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=99.29 E-value=1.2e-11 Score=105.57 Aligned_cols=86 Identities=22% Similarity=0.358 Sum_probs=70.4
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-C-
Q 048309 56 RKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-K- 133 (288)
Q Consensus 56 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~- 133 (288)
.....+++.+...++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.+++++... ++++++++|+.+++ +
T Consensus 17 ~~~~~i~~~~~~~~~~~VLDiG~G~G~lt~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~---~~v~~~~~D~~~~~~~~ 92 (244)
T 1qam_A 17 HNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQR-CNFVTAIEIDHKLCKTTENKLVDH---DNFQVLNKDILQFKFPK 92 (244)
T ss_dssp HHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHTTTC---CSEEEECCCGGGCCCCS
T ss_pred HHHHHHHHhCCCCCCCEEEEEeCCchHHHHHHHHc-CCeEEEEECCHHHHHHHHHhhccC---CCeEEEEChHHhCCccc
Confidence 45567788888888899999999999999999987 679999999999999999887542 47999999999987 3
Q ss_pred CCCCCEEEEccch
Q 048309 134 AKKYDRIISCEMM 146 (288)
Q Consensus 134 ~~~fD~I~~~~~l 146 (288)
...| .|+++...
T Consensus 93 ~~~~-~vv~nlPy 104 (244)
T 1qam_A 93 NQSY-KIFGNIPY 104 (244)
T ss_dssp SCCC-EEEEECCG
T ss_pred CCCe-EEEEeCCc
Confidence 2345 56665443
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.27 E-value=7.7e-12 Score=115.88 Aligned_cols=119 Identities=12% Similarity=0.119 Sum_probs=95.4
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc--------------cCCEEEEEcCCHHHHHHHHHHHHHcCCCC-ce
Q 048309 57 KHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ--------------TGCNYTGITLSAEQMKYAEMKVNEAGLQD-HI 121 (288)
Q Consensus 57 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~--------------~~~~v~giD~s~~~~~~a~~~~~~~g~~~-~v 121 (288)
....+++.+.+.++.+|+|+|||+|.++..+++. ...+++|+|+++.+++.|+.++...|+.. ++
T Consensus 159 v~~~mv~~l~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~ 238 (445)
T 2okc_A 159 LIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRS 238 (445)
T ss_dssp HHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCC
T ss_pred HHHHHHHHhCCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCC
Confidence 3445666667778889999999999999888764 23679999999999999999998888742 67
Q ss_pred EEEEcccCCCCCCCCCCEEEEccchhhhCHh---------------hHHHHHHHHhcccccCcEEEEEe
Q 048309 122 RLYLCDYRQLPKAKKYDRIISCEMMEAVGHE---------------YMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 122 ~~~~~d~~~~~~~~~fD~I~~~~~l~~~~~~---------------~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
++.++|....+...+||+|+++..+.+.... ....+++.+.+.|+|||++++..
T Consensus 239 ~i~~gD~l~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~ 307 (445)
T 2okc_A 239 PIVCEDSLEKEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVL 307 (445)
T ss_dssp SEEECCTTTSCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CEeeCCCCCCcccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEE
Confidence 8999999887744699999999877654211 12478999999999999998854
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.25 E-value=7.3e-11 Score=104.02 Aligned_cols=117 Identities=10% Similarity=-0.002 Sum_probs=89.8
Q ss_pred HHHHcCCCCCCEEEEECCcccHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCC----
Q 048309 61 LIEKARVSKEHEVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKA---- 134 (288)
Q Consensus 61 l~~~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~---- 134 (288)
+...+.+.++.+|||+|||+|..+..+++. ...+|+++|+++.+++.++++++..|+ .+++++++|+.++...
T Consensus 94 ~~~~l~~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~-~~v~~~~~D~~~~~~~~~~~ 172 (309)
T 2b9e_A 94 PAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGV-SCCELAEEDFLAVSPSDPRY 172 (309)
T ss_dssp HHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTC-CSEEEEECCGGGSCTTCGGG
T ss_pred HHHHhCCCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEeCChHhcCcccccc
Confidence 344567788999999999999999999985 346999999999999999999999998 4899999999887621
Q ss_pred CCCCEEEEccc------hhhh---------CHhh-------HHHHHHHHhcccccCcEEEEEeecCC
Q 048309 135 KKYDRIISCEM------MEAV---------GHEY-------MEEYFGCCESLLAKDGLLVLQFSSTP 179 (288)
Q Consensus 135 ~~fD~I~~~~~------l~~~---------~~~~-------~~~~l~~~~~~LkpgG~l~~~~~~~~ 179 (288)
.+||.|++... +..- ++++ ..++++.+.++|+ ||+++.++.+..
T Consensus 173 ~~fD~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs~~ 238 (309)
T 2b9e_A 173 HEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCSLC 238 (309)
T ss_dssp TTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESCCC
T ss_pred CCCCEEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCCCC
Confidence 57999998432 2110 0111 1346888888887 999998877643
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=1.4e-11 Score=107.37 Aligned_cols=126 Identities=16% Similarity=0.116 Sum_probs=85.0
Q ss_pred HHHhhhhhcCCCCCCCHHHHHHHHHHHHH--HHcCCCCCCEEEEECC------cccHHHHHHHHc-c-CCEEEEEcCCHH
Q 048309 34 AHRNISYHYDLDEDEDLKVAQMRKHSLLI--EKARVSKEHEVLEIGC------GWGTFAIEVVRQ-T-GCNYTGITLSAE 103 (288)
Q Consensus 34 ~~~~~a~~Yd~~~~~~l~~a~~~~~~~l~--~~~~~~~~~~vLDiGc------G~G~~~~~la~~-~-~~~v~giD~s~~ 103 (288)
.|.+.+..||.. ....+....+...+ ..+.++++.+|||+|| |+|. ..+++. + +.+|+|+|+|+.
T Consensus 29 ~Y~~~~~~p~g~---~~n~~~y~~l~~~l~~~~l~l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~ 103 (290)
T 2xyq_A 29 NYGENAVIPKGI---MMNVAKYTQLCQYLNTLTLAVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF 103 (290)
T ss_dssp SCCCCTTSCTTC---CHHHHHHHHHHHHHTTSCCCCCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC
T ss_pred hhhcCCcCCCcc---cccHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC
Confidence 455566666653 23222222222223 2346778999999999 5577 444444 3 579999999997
Q ss_pred HHHHHHHHHHHcCCCCceEE-EEcccCCCCCCCCCCEEEEccchhh--------h-CHhhHHHHHHHHhcccccCcEEEE
Q 048309 104 QMKYAEMKVNEAGLQDHIRL-YLCDYRQLPKAKKYDRIISCEMMEA--------V-GHEYMEEYFGCCESLLAKDGLLVL 173 (288)
Q Consensus 104 ~~~~a~~~~~~~g~~~~v~~-~~~d~~~~~~~~~fD~I~~~~~l~~--------~-~~~~~~~~l~~~~~~LkpgG~l~~ 173 (288)
+ .++++ +++|+.+++..++||+|+++...+. . .......+++++.++|||||.|++
T Consensus 104 -------------v-~~v~~~i~gD~~~~~~~~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~ 169 (290)
T 2xyq_A 104 -------------V-SDADSTLIGDCATVHTANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAV 169 (290)
T ss_dssp -------------B-CSSSEEEESCGGGCCCSSCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEE
T ss_pred -------------C-CCCEEEEECccccCCccCcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEE
Confidence 1 26788 9999998775578999999743221 1 013356899999999999999999
Q ss_pred EeecC
Q 048309 174 QFSST 178 (288)
Q Consensus 174 ~~~~~ 178 (288)
..+..
T Consensus 170 ~~~~~ 174 (290)
T 2xyq_A 170 KITEH 174 (290)
T ss_dssp EECSS
T ss_pred EEecc
Confidence 76543
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.5e-11 Score=111.17 Aligned_cols=112 Identities=11% Similarity=0.182 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-
Q 048309 54 QMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP- 132 (288)
Q Consensus 54 ~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~- 132 (288)
.......+++.+... +.+|||+|||+|.++..+++. ..+|+|+|+|+.+++.|+++++.+++ .+++++.+|+.++.
T Consensus 199 ~~~l~~~~~~~~~~~-~~~vLDl~cG~G~~~l~la~~-~~~V~gvd~~~~ai~~a~~n~~~ng~-~~v~~~~~d~~~~~~ 275 (369)
T 3bt7_A 199 NIQMLEWALDVTKGS-KGDLLELYCGNGNFSLALARN-FDRVLATEIAKPSVAAAQYNIAANHI-DNVQIIRMAAEEFTQ 275 (369)
T ss_dssp HHHHHHHHHHHTTTC-CSEEEEESCTTSHHHHHHGGG-SSEEEEECCCHHHHHHHHHHHHHTTC-CSEEEECCCSHHHHH
T ss_pred HHHHHHHHHHHhhcC-CCEEEEccCCCCHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHcCC-CceEEEECCHHHHHH
Confidence 345566777777654 578999999999999999875 66999999999999999999999998 58999999997752
Q ss_pred --CC--------------CCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEee
Q 048309 133 --KA--------------KKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 133 --~~--------------~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
.. .+||+|++...-.. +..++.+.|+++|.++..+.
T Consensus 276 ~~~~~~~~~~l~~~~~~~~~fD~Vv~dPPr~g--------~~~~~~~~l~~~g~ivyvsc 327 (369)
T 3bt7_A 276 AMNGVREFNRLQGIDLKSYQCETIFVDPPRSG--------LDSETEKMVQAYPRILYISC 327 (369)
T ss_dssp HHSSCCCCTTGGGSCGGGCCEEEEEECCCTTC--------CCHHHHHHHTTSSEEEEEES
T ss_pred HHhhccccccccccccccCCCCEEEECcCccc--------cHHHHHHHHhCCCEEEEEEC
Confidence 11 37999998754322 22344566678888877554
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=1.6e-11 Score=112.66 Aligned_cols=111 Identities=17% Similarity=0.290 Sum_probs=85.9
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCC
Q 048309 57 KHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKA 134 (288)
Q Consensus 57 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~ 134 (288)
....+++.+...++.+|||+|||+|.++..++++ ...+++|+|+++.+++.| .+++++++|+.+....
T Consensus 27 l~~~~~~~~~~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a----------~~~~~~~~D~~~~~~~ 96 (421)
T 2ih2_A 27 VVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP----------PWAEGILADFLLWEPG 96 (421)
T ss_dssp HHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC----------TTEEEEESCGGGCCCS
T ss_pred HHHHHHHhhccCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC----------CCCcEEeCChhhcCcc
Confidence 3445666666556779999999999999999886 457999999999998766 3689999999988766
Q ss_pred CCCCEEEEccchhh----------hCHhh-----------------HHHHHHHHhcccccCcEEEEEeec
Q 048309 135 KKYDRIISCEMMEA----------VGHEY-----------------MEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 135 ~~fD~I~~~~~l~~----------~~~~~-----------------~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
++||+|+++..+.. +..+. ...+++.+.++|+|||.+++....
T Consensus 97 ~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~ 166 (421)
T 2ih2_A 97 EAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPA 166 (421)
T ss_dssp SCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred CCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEECh
Confidence 79999999744321 11111 236799999999999999886543
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.17 E-value=2e-10 Score=98.42 Aligned_cols=87 Identities=16% Similarity=0.234 Sum_probs=72.7
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-C-
Q 048309 56 RKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-K- 133 (288)
Q Consensus 56 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~- 133 (288)
.....+++.+++.++.+|||||||+|.++..+++. +.+|+++|+++.+++.+++++... ++++++++|+.+++ +
T Consensus 16 ~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~-~~~V~avEid~~~~~~~~~~~~~~---~~v~~i~~D~~~~~~~~ 91 (255)
T 3tqs_A 16 FVLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTE-CDNLALVEIDRDLVAFLQKKYNQQ---KNITIYQNDALQFDFSS 91 (255)
T ss_dssp HHHHHHHHHHCCCTTCEEEEECCTTTTTHHHHTTT-SSEEEEEECCHHHHHHHHHHHTTC---TTEEEEESCTTTCCGGG
T ss_pred HHHHHHHHhcCCCCcCEEEEEcccccHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHhhC---CCcEEEEcchHhCCHHH
Confidence 45567888888889999999999999999999986 679999999999999999988652 58999999999986 2
Q ss_pred ---CCCCCEEEEccchh
Q 048309 134 ---AKKYDRIISCEMME 147 (288)
Q Consensus 134 ---~~~fD~I~~~~~l~ 147 (288)
.++|| |+++...+
T Consensus 92 ~~~~~~~~-vv~NlPY~ 107 (255)
T 3tqs_A 92 VKTDKPLR-VVGNLPYN 107 (255)
T ss_dssp SCCSSCEE-EEEECCHH
T ss_pred hccCCCeE-EEecCCcc
Confidence 35677 66665543
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.16 E-value=7.3e-13 Score=113.12 Aligned_cols=112 Identities=19% Similarity=0.275 Sum_probs=85.6
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-C-C
Q 048309 57 KHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-K-A 134 (288)
Q Consensus 57 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~-~ 134 (288)
....+++.+...++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.+++++.. ..+++++++|+.+++ + +
T Consensus 17 ~~~~i~~~~~~~~~~~VLDiG~G~G~~~~~l~~~-~~~v~~id~~~~~~~~a~~~~~~---~~~v~~~~~D~~~~~~~~~ 92 (245)
T 1yub_A 17 VLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFNLSSEKLKL---NTRVTLIHQDILQFQFPNK 92 (245)
T ss_dssp THHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHH-SSEEEESSSSCSSSSSSSCTTTT---CSEEEECCSCCTTTTCCCS
T ss_pred HHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHh-CCeEEEEECCHHHHHHHHHHhcc---CCceEEEECChhhcCcccC
Confidence 4567788888888999999999999999999987 68999999999999988877642 257999999999987 3 3
Q ss_pred CCCCEEEEccchhhhCHh----------hHHHHH----HHHhcccccCcEEEEE
Q 048309 135 KKYDRIISCEMMEAVGHE----------YMEEYF----GCCESLLAKDGLLVLQ 174 (288)
Q Consensus 135 ~~fD~I~~~~~l~~~~~~----------~~~~~l----~~~~~~LkpgG~l~~~ 174 (288)
++| .|+++..... +.. .....+ +.+.++|+|||.+.+.
T Consensus 93 ~~f-~vv~n~Py~~-~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~ 144 (245)
T 1yub_A 93 QRY-KIVGNIPYHL-STQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLL 144 (245)
T ss_dssp SEE-EEEEECCSSS-CHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHH
T ss_pred CCc-EEEEeCCccc-cHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhh
Confidence 678 6777643221 111 112233 6688999999997763
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=7.9e-11 Score=106.63 Aligned_cols=100 Identities=14% Similarity=0.067 Sum_probs=84.1
Q ss_pred CCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHc---------------CCCCceEEEEcccCCCC
Q 048309 69 KEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEA---------------GLQDHIRLYLCDYRQLP 132 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~---------------g~~~~v~~~~~d~~~~~ 132 (288)
++.+|||+|||+|..+..+++. ++.+|+++|+++.+++.++++++.+ ++. +++++++|+.++.
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~-~i~v~~~Da~~~~ 125 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEK-TIVINHDDANRLM 125 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSS-EEEEEESCHHHHH
T ss_pred CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCC-ceEEEcCcHHHHH
Confidence 5789999999999999999987 5678999999999999999999998 774 5999999998764
Q ss_pred --CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 133 --KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 133 --~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
..++||+|+.... . ....++..+.+.|++||.++++.
T Consensus 126 ~~~~~~fD~I~lDP~-~-----~~~~~l~~a~~~lk~gG~l~vt~ 164 (378)
T 2dul_A 126 AERHRYFHFIDLDPF-G-----SPMEFLDTALRSAKRRGILGVTA 164 (378)
T ss_dssp HHSTTCEEEEEECCS-S-----CCHHHHHHHHHHEEEEEEEEEEE
T ss_pred HhccCCCCEEEeCCC-C-----CHHHHHHHHHHhcCCCCEEEEEe
Confidence 3468999997542 1 22577888889999999888754
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=4.1e-11 Score=108.72 Aligned_cols=102 Identities=9% Similarity=0.047 Sum_probs=84.9
Q ss_pred CCCCEEEEECCcccHHHHHHHHc-cC-CEEEEEcCCHHHHHHHHHHHHHcCCCCc-eEEEEcccCCCC---CCCCCCEEE
Q 048309 68 SKEHEVLEIGCGWGTFAIEVVRQ-TG-CNYTGITLSAEQMKYAEMKVNEAGLQDH-IRLYLCDYRQLP---KAKKYDRII 141 (288)
Q Consensus 68 ~~~~~vLDiGcG~G~~~~~la~~-~~-~~v~giD~s~~~~~~a~~~~~~~g~~~~-v~~~~~d~~~~~---~~~~fD~I~ 141 (288)
.++.+|||++||+|.+++.++++ .+ .+|+++|+++.+++.++++++.+++.++ ++++.+|+.++. ..++||+|+
T Consensus 51 ~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~ 130 (392)
T 3axs_A 51 GRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVD 130 (392)
T ss_dssp CSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEE
T ss_pred CCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEE
Confidence 46789999999999999999986 34 5899999999999999999999999655 999999986642 246799999
Q ss_pred EccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 142 SCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 142 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
+.. . .....++..+.+.|++||.++++.
T Consensus 131 lDP-~-----g~~~~~l~~a~~~Lk~gGll~~t~ 158 (392)
T 3axs_A 131 LDP-F-----GTPVPFIESVALSMKRGGILSLTA 158 (392)
T ss_dssp ECC-S-----SCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred ECC-C-----cCHHHHHHHHHHHhCCCCEEEEEe
Confidence 876 1 122468888889999999888865
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=1.6e-10 Score=99.92 Aligned_cols=98 Identities=16% Similarity=0.209 Sum_probs=78.3
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CC
Q 048309 56 RKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KA 134 (288)
Q Consensus 56 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~ 134 (288)
.....+++.+++.++ +|||||||+|.++..+++. +.+|+++|+++.+++.+++++.. .+++++++|+.+++ +.
T Consensus 34 ~i~~~Iv~~~~~~~~-~VLEIG~G~G~lt~~L~~~-~~~V~avEid~~~~~~l~~~~~~----~~v~vi~~D~l~~~~~~ 107 (271)
T 3fut_A 34 AHLRRIVEAARPFTG-PVFEVGPGLGALTRALLEA-GAEVTAIEKDLRLRPVLEETLSG----LPVRLVFQDALLYPWEE 107 (271)
T ss_dssp HHHHHHHHHHCCCCS-CEEEECCTTSHHHHHHHHT-TCCEEEEESCGGGHHHHHHHTTT----SSEEEEESCGGGSCGGG
T ss_pred HHHHHHHHhcCCCCC-eEEEEeCchHHHHHHHHHc-CCEEEEEECCHHHHHHHHHhcCC----CCEEEEECChhhCChhh
Confidence 456778888888889 9999999999999999997 67999999999999999988752 47999999999887 32
Q ss_pred -CCCCEEEEccchhhhCHhhHHHHHHH
Q 048309 135 -KKYDRIISCEMMEAVGHEYMEEYFGC 160 (288)
Q Consensus 135 -~~fD~I~~~~~l~~~~~~~~~~~l~~ 160 (288)
..+|.|+++...+ ++.+-...++..
T Consensus 108 ~~~~~~iv~NlPy~-iss~il~~ll~~ 133 (271)
T 3fut_A 108 VPQGSLLVANLPYH-IATPLVTRLLKT 133 (271)
T ss_dssp SCTTEEEEEEECSS-CCHHHHHHHHHH
T ss_pred ccCccEEEecCccc-ccHHHHHHHhcC
Confidence 3689998876544 333344444443
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=99.12 E-value=3.6e-11 Score=103.38 Aligned_cols=87 Identities=13% Similarity=0.114 Sum_probs=70.4
Q ss_pred HHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCH-------HHHHHHHHHHHHcCCCCceEEEEcccCCCC-
Q 048309 61 LIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSA-------EQMKYAEMKVNEAGLQDHIRLYLCDYRQLP- 132 (288)
Q Consensus 61 l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~-------~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~- 132 (288)
+.+.+...++.+|||+|||+|..+..+++. +++|+|+|+++ .+++.|+++++.+++..+++++++|+.++.
T Consensus 75 l~~a~~~~~~~~VLDlgcG~G~~a~~lA~~-g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~ 153 (258)
T 2r6z_A 75 IAKAVNHTAHPTVWDATAGLGRDSFVLASL-GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMP 153 (258)
T ss_dssp HHHHTTGGGCCCEEETTCTTCHHHHHHHHT-TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHH
T ss_pred HHHHhCcCCcCeEEEeeCccCHHHHHHHHh-CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHH
Confidence 334445556789999999999999999986 78999999999 999999988877776556999999998852
Q ss_pred --CC--CCCCEEEEccchhh
Q 048309 133 --KA--KKYDRIISCEMMEA 148 (288)
Q Consensus 133 --~~--~~fD~I~~~~~l~~ 148 (288)
++ ++||+|++...+.+
T Consensus 154 ~~~~~~~~fD~V~~dP~~~~ 173 (258)
T 2r6z_A 154 ALVKTQGKPDIVYLDPMYPE 173 (258)
T ss_dssp HHHHHHCCCSEEEECCCC--
T ss_pred hhhccCCCccEEEECCCCCC
Confidence 22 68999999876655
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=1.2e-10 Score=102.12 Aligned_cols=87 Identities=26% Similarity=0.415 Sum_probs=74.0
Q ss_pred HHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC---C
Q 048309 58 HSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP---K 133 (288)
Q Consensus 58 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~---~ 133 (288)
+..+++.+.+.++.+|||+|||+|..+..+++. ++.+|+|+|.|+.+++.|+++++..+ .+++++++|+.+++ .
T Consensus 15 l~e~l~~L~~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g--~~v~~v~~d~~~l~~~l~ 92 (301)
T 1m6y_A 15 VREVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS--DRVSLFKVSYREADFLLK 92 (301)
T ss_dssp HHHHHHHHCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT--TTEEEEECCGGGHHHHHH
T ss_pred HHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEECCHHHHHHHHH
Confidence 456677778888999999999999999999987 46899999999999999999988776 48999999998864 1
Q ss_pred ---CCCCCEEEEccch
Q 048309 134 ---AKKYDRIISCEMM 146 (288)
Q Consensus 134 ---~~~fD~I~~~~~l 146 (288)
..+||.|++...+
T Consensus 93 ~~g~~~~D~Vl~D~gv 108 (301)
T 1m6y_A 93 TLGIEKVDGILMDLGV 108 (301)
T ss_dssp HTTCSCEEEEEEECSC
T ss_pred hcCCCCCCEEEEcCcc
Confidence 1589999986543
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=8.2e-10 Score=105.37 Aligned_cols=102 Identities=15% Similarity=0.190 Sum_probs=78.0
Q ss_pred CCEEEEECCcccHHHHH---HHHccCC--EEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCEEEEcc
Q 048309 70 EHEVLEIGCGWGTFAIE---VVRQTGC--NYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCE 144 (288)
Q Consensus 70 ~~~vLDiGcG~G~~~~~---la~~~~~--~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~~~~ 144 (288)
+..|+|+|||+|-++.. .++..+. +|++||.|+ +...+++....+++.++|+++.+|++++..++++|+||+-.
T Consensus 358 ~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~v~~N~~~dkVtVI~gd~eev~LPEKVDIIVSEw 436 (637)
T 4gqb_A 358 VQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLENWQFEEWGSQVTVVSSDMREWVAPEKADIIVSEL 436 (637)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHHHHHHTTGGGEEEEESCTTTCCCSSCEEEEECCC
T ss_pred CcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHHHHhccCCCeEEEEeCcceeccCCcccCEEEEEc
Confidence 45799999999998444 3333333 689999997 66788888999999999999999999999778999999843
Q ss_pred chhhhCHhhHHHHHHHHhcccccCcEEE
Q 048309 145 MMEAVGHEYMEEYFGCCESLLAKDGLLV 172 (288)
Q Consensus 145 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~ 172 (288)
.=..+-.+...+.+....++|||||.++
T Consensus 437 MG~fLl~E~mlevL~Ardr~LKPgGimi 464 (637)
T 4gqb_A 437 LGSFADNELSPECLDGAQHFLKDDGVSI 464 (637)
T ss_dssp CBTTBGGGCHHHHHHHHGGGEEEEEEEE
T ss_pred CcccccccCCHHHHHHHHHhcCCCcEEc
Confidence 2111111334567778889999999864
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=99.08 E-value=1.2e-09 Score=90.03 Aligned_cols=112 Identities=11% Similarity=0.091 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCC--CCceEEEEcc
Q 048309 50 LKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGL--QDHIRLYLCD 127 (288)
Q Consensus 50 l~~a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~--~~~v~~~~~d 127 (288)
+...+.+.+...+. +..+|||+||| ..+..+|+..+.+|+.||.+++..+.++++++.+|+ .++++++.+|
T Consensus 16 v~~~~~~~L~~~l~-----~a~~VLEiGtG--ySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gd 88 (202)
T 3cvo_A 16 MPPAEAEALRMAYE-----EAEVILEYGSG--GSTVVAAELPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTD 88 (202)
T ss_dssp SCHHHHHHHHHHHH-----HCSEEEEESCS--HHHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECC
T ss_pred CCHHHHHHHHHHhh-----CCCEEEEECch--HHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeC
Confidence 33444555544332 46799999985 677777764467999999999999999999999998 7899999999
Q ss_pred cCCC---------------C----------CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 128 YRQL---------------P----------KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 128 ~~~~---------------~----------~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
+.+. + ..++||+|+..+-.. ...+..+.+.|+|||++++..
T Consensus 89 a~~~~~wg~p~~~~~~~~l~~~~~~i~~~~~~~~fDlIfIDg~k~-------~~~~~~~l~~l~~GG~Iv~DN 154 (202)
T 3cvo_A 89 IGPTGDWGHPVSDAKWRSYPDYPLAVWRTEGFRHPDVVLVDGRFR-------VGCALATAFSITRPVTLLFDD 154 (202)
T ss_dssp CSSBCGGGCBSSSTTGGGTTHHHHGGGGCTTCCCCSEEEECSSSH-------HHHHHHHHHHCSSCEEEEETT
T ss_pred chhhhcccccccchhhhhHHHHhhhhhccccCCCCCEEEEeCCCc-------hhHHHHHHHhcCCCeEEEEeC
Confidence 6542 1 236899999986421 355566779999999998754
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=99.02 E-value=1.4e-09 Score=92.85 Aligned_cols=72 Identities=15% Similarity=0.222 Sum_probs=62.7
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC
Q 048309 56 RKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP 132 (288)
Q Consensus 56 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~ 132 (288)
.....+++.+...++.+|||||||+|.++..+++.+..+|+|+|+++.+++.++++ . ..+++++++|+.+++
T Consensus 18 ~i~~~iv~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~--~---~~~v~~i~~D~~~~~ 89 (249)
T 3ftd_A 18 GVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSI--G---DERLEVINEDASKFP 89 (249)
T ss_dssp HHHHHHHHHTTCCTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTS--C---CTTEEEECSCTTTCC
T ss_pred HHHHHHHHhcCCCCcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhc--c---CCCeEEEEcchhhCC
Confidence 45677888888888999999999999999999986347999999999999999877 1 247999999999987
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=2.5e-09 Score=104.16 Aligned_cols=120 Identities=17% Similarity=0.158 Sum_probs=91.5
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc-------------------------------------------cCC
Q 048309 57 KHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-------------------------------------------TGC 93 (288)
Q Consensus 57 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-------------------------------------------~~~ 93 (288)
....++......++..|||.+||+|.+++.++.. +..
T Consensus 178 LAa~ll~~~~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~ 257 (703)
T 3v97_A 178 LAAAIVMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSS 257 (703)
T ss_dssp HHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHhhCCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCc
Confidence 3455677777778889999999999999887753 125
Q ss_pred EEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-C--CCCCCEEEEccchhh-h-CHhhHHHHHHHHhc---cc
Q 048309 94 NYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-K--AKKYDRIISCEMMEA-V-GHEYMEEYFGCCES---LL 165 (288)
Q Consensus 94 ~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~--~~~fD~I~~~~~l~~-~-~~~~~~~~l~~~~~---~L 165 (288)
+++|+|+++.+++.|+.+++.+|+.+.+++.++|+.++. + .++||+|+++..+.. + ..++...+.+.+.+ .+
T Consensus 258 ~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk~~ 337 (703)
T 3v97_A 258 HFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKNQ 337 (703)
T ss_dssp CEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHHHH
T ss_pred cEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHHhh
Confidence 799999999999999999999999777999999999875 2 238999999966532 1 22344555554444 44
Q ss_pred ccCcEEEEEee
Q 048309 166 AKDGLLVLQFS 176 (288)
Q Consensus 166 kpgG~l~~~~~ 176 (288)
.|||.+++.+.
T Consensus 338 ~~g~~~~ilt~ 348 (703)
T 3v97_A 338 FGGWNLSLFSA 348 (703)
T ss_dssp CTTCEEEEEES
T ss_pred CCCCeEEEEeC
Confidence 57999988643
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.01 E-value=2e-09 Score=93.40 Aligned_cols=86 Identities=16% Similarity=0.184 Sum_probs=68.4
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCE----EEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCC
Q 048309 56 RKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCN----YTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQL 131 (288)
Q Consensus 56 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~----v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~ 131 (288)
.....+++.+.+.++.+|||||||+|.++..+++. +.. |+|+|+++.+++.++++. ..+++++++|+.++
T Consensus 29 ~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~-~~~~~~~V~avDid~~~l~~a~~~~-----~~~v~~i~~D~~~~ 102 (279)
T 3uzu_A 29 GVIDAIVAAIRPERGERMVEIGPGLGALTGPVIAR-LATPGSPLHAVELDRDLIGRLEQRF-----GELLELHAGDALTF 102 (279)
T ss_dssp HHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHHHH-HCBTTBCEEEEECCHHHHHHHHHHH-----GGGEEEEESCGGGC
T ss_pred HHHHHHHHhcCCCCcCEEEEEccccHHHHHHHHHh-CCCcCCeEEEEECCHHHHHHHHHhc-----CCCcEEEECChhcC
Confidence 35567888888889999999999999999999987 334 999999999999999884 15799999999998
Q ss_pred CCCC-------CCCEEEEccchh
Q 048309 132 PKAK-------KYDRIISCEMME 147 (288)
Q Consensus 132 ~~~~-------~fD~I~~~~~l~ 147 (288)
+.+. ..+.|+++....
T Consensus 103 ~~~~~~~~~~~~~~~vv~NlPY~ 125 (279)
T 3uzu_A 103 DFGSIARPGDEPSLRIIGNLPYN 125 (279)
T ss_dssp CGGGGSCSSSSCCEEEEEECCHH
T ss_pred ChhHhcccccCCceEEEEccCcc
Confidence 7222 234566665443
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=98.97 E-value=2.5e-10 Score=97.92 Aligned_cols=107 Identities=10% Similarity=0.102 Sum_probs=76.0
Q ss_pred HHHHHHcCCCCC--CEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHc-------C-CCCceEEEEccc
Q 048309 59 SLLIEKARVSKE--HEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEA-------G-LQDHIRLYLCDY 128 (288)
Q Consensus 59 ~~l~~~~~~~~~--~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~-------g-~~~~v~~~~~d~ 128 (288)
+.+++.+.+.++ .+|||+|||+|..+..+++. +++|+++|.++.+.+.+++.++.. + +..+++++++|.
T Consensus 76 e~l~~al~l~~g~~~~VLDl~~G~G~dal~lA~~-g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~ 154 (258)
T 2oyr_A 76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV-GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASS 154 (258)
T ss_dssp SHHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHH-TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCH
T ss_pred HHHHHHhcccCCCCCEEEEcCCcCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCH
Confidence 456677777777 89999999999999999987 779999999999877777665432 1 224799999999
Q ss_pred CCC-C-CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCc
Q 048309 129 RQL-P-KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDG 169 (288)
Q Consensus 129 ~~~-~-~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG 169 (288)
.++ + ..++||+|++...+.+-. ..+.+++..+.|++.+
T Consensus 155 ~~~L~~~~~~fDvV~lDP~y~~~~---~saavkk~~~~lr~l~ 194 (258)
T 2oyr_A 155 LTALTDITPRPQVVYLDPMFPHKQ---KSALVKKEMRVFQSLV 194 (258)
T ss_dssp HHHSTTCSSCCSEEEECCCCCCCC---C-----HHHHHHHHHS
T ss_pred HHHHHhCcccCCEEEEcCCCCCcc---cchHHHHHHHHHHHhh
Confidence 874 3 335799999998776532 1234444445554433
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=98.96 E-value=1.4e-09 Score=102.84 Aligned_cols=117 Identities=13% Similarity=0.072 Sum_probs=91.8
Q ss_pred HHHHHHcCCCCCCEEEEECCcccHHHHHHHHc-c------------------CCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 048309 59 SLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-T------------------GCNYTGITLSAEQMKYAEMKVNEAGLQD 119 (288)
Q Consensus 59 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~------------------~~~v~giD~s~~~~~~a~~~~~~~g~~~ 119 (288)
..+++.+.+.++.+|+|.+||+|.++..+++. . ..+++|+|+++.+++.|+.++...|+..
T Consensus 159 ~~mv~~l~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~ 238 (541)
T 2ar0_A 159 KTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEG 238 (541)
T ss_dssp HHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCC
T ss_pred HHHHHHhccCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCc
Confidence 44566667778889999999999998887764 1 2479999999999999999988888743
Q ss_pred ----ceEEEEcccCCCC--CCCCCCEEEEccchhhhCH------------hhHHHHHHHHhcccccCcEEEEEe
Q 048309 120 ----HIRLYLCDYRQLP--KAKKYDRIISCEMMEAVGH------------EYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 120 ----~v~~~~~d~~~~~--~~~~fD~I~~~~~l~~~~~------------~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
++.+.++|....+ ...+||+|+++..+..... .....++..+.+.|+|||++.+..
T Consensus 239 ~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~ 312 (541)
T 2ar0_A 239 NLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVV 312 (541)
T ss_dssp BGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccCCeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEe
Confidence 2789999987654 4578999999877654311 123478999999999999998854
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.95 E-value=5.6e-09 Score=90.70 Aligned_cols=124 Identities=20% Similarity=0.244 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHc--C-C-CCceEEEEcc
Q 048309 53 AQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEA--G-L-QDHIRLYLCD 127 (288)
Q Consensus 53 a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~--g-~-~~~v~~~~~d 127 (288)
.+.+.+.+..-... +.+++||-||.|.|..+..++++ +..+|+.||+++.+++.|++.+... + + .++++++.+|
T Consensus 68 ~YhE~l~h~~l~~~-p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~D 146 (294)
T 3o4f_A 68 IYHEMMTHVPLLAH-GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDD 146 (294)
T ss_dssp HHHHHHHHHHHHHS-SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESC
T ss_pred HHHHHHHHHHHhhC-CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEech
Confidence 33444444333333 35679999999999999999988 5579999999999999999987531 1 1 3689999999
Q ss_pred cCCCC--CCCCCCEEEEccchhhhCHh--hHHHHHHHHhcccccCcEEEEEeec
Q 048309 128 YRQLP--KAKKYDRIISCEMMEAVGHE--YMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 128 ~~~~~--~~~~fD~I~~~~~l~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
...+- ..++||+|+....-..-+.. --.++++.+.+.|+|||+++....+
T Consensus 147 g~~~l~~~~~~yDvIi~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~~s 200 (294)
T 3o4f_A 147 GVNFVNQTSQTFDVIISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQNGV 200 (294)
T ss_dssp TTTTTSCSSCCEEEEEESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEEEE
T ss_pred HHHHHhhccccCCEEEEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEecCC
Confidence 99876 66899999986532111101 1267899999999999999986543
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.91 E-value=1.6e-09 Score=98.57 Aligned_cols=75 Identities=15% Similarity=0.120 Sum_probs=66.3
Q ss_pred CCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHc--CCCCceEEEEcccCCCC---CCCCCCEEEEc
Q 048309 69 KEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEA--GLQDHIRLYLCDYRQLP---KAKKYDRIISC 143 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~--g~~~~v~~~~~d~~~~~---~~~~fD~I~~~ 143 (288)
+|.+|||+|||+|..+..+++. +.+|+++|+|+.+++.|+++++.. |+ .+++++++|+.++. ..++||+|++.
T Consensus 93 ~g~~VLDLgcG~G~~al~LA~~-g~~V~~VD~s~~~l~~Ar~N~~~~~~gl-~~i~~i~~Da~~~L~~~~~~~fDvV~lD 170 (410)
T 3ll7_A 93 EGTKVVDLTGGLGIDFIALMSK-ASQGIYIERNDETAVAARHNIPLLLNEG-KDVNILTGDFKEYLPLIKTFHPDYIYVD 170 (410)
T ss_dssp TTCEEEESSCSSSHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHHSCTT-CEEEEEESCGGGSHHHHHHHCCSEEEEC
T ss_pred CCCEEEEeCCCchHHHHHHHhc-CCEEEEEECCHHHHHHHHHhHHHhccCC-CcEEEEECcHHHhhhhccCCCceEEEEC
Confidence 5889999999999999999886 779999999999999999999988 87 68999999999853 23689999997
Q ss_pred cc
Q 048309 144 EM 145 (288)
Q Consensus 144 ~~ 145 (288)
..
T Consensus 171 PP 172 (410)
T 3ll7_A 171 PA 172 (410)
T ss_dssp CE
T ss_pred CC
Confidence 43
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.90 E-value=2.3e-09 Score=101.43 Aligned_cols=117 Identities=15% Similarity=0.079 Sum_probs=88.4
Q ss_pred HHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc-c---------------CCEEEEEcCCHHHHHHHHHHHHHcCCCCce
Q 048309 58 HSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-T---------------GCNYTGITLSAEQMKYAEMKVNEAGLQDHI 121 (288)
Q Consensus 58 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~---------------~~~v~giD~s~~~~~~a~~~~~~~g~~~~v 121 (288)
...+++.+.+.++ +|+|.+||+|.+...+++. . ...++|+|+++.+++.|+.++...|+..++
T Consensus 234 v~lmv~ll~p~~~-~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i 312 (544)
T 3khk_A 234 VTLIVEMLEPYKG-RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFNF 312 (544)
T ss_dssp HHHHHHHHCCCSE-EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCBC
T ss_pred HHHHHHHHhcCCC-eEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCccc
Confidence 3445555665555 9999999999998876543 1 458999999999999999999888886565
Q ss_pred EEEEcccCCCC--CCCCCCEEEEccchhh-------------------------hCHh--hHHHHHHHHhcccccCcEEE
Q 048309 122 RLYLCDYRQLP--KAKKYDRIISCEMMEA-------------------------VGHE--YMEEYFGCCESLLAKDGLLV 172 (288)
Q Consensus 122 ~~~~~d~~~~~--~~~~fD~I~~~~~l~~-------------------------~~~~--~~~~~l~~~~~~LkpgG~l~ 172 (288)
.+.++|....+ ...+||+|+++..+.. +++. .--.+++.+.+.|+|||++.
T Consensus 313 ~i~~gDtL~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a 392 (544)
T 3khk_A 313 GKKNADSFLDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSMA 392 (544)
T ss_dssp CSSSCCTTTSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEEE
T ss_pred ceeccchhcCcccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCceEE
Confidence 55888887655 4578999999876542 1000 11268999999999999988
Q ss_pred EEe
Q 048309 173 LQF 175 (288)
Q Consensus 173 ~~~ 175 (288)
+..
T Consensus 393 iVl 395 (544)
T 3khk_A 393 LLL 395 (544)
T ss_dssp EEE
T ss_pred EEe
Confidence 754
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=98.87 E-value=1.2e-09 Score=93.39 Aligned_cols=85 Identities=14% Similarity=0.074 Sum_probs=67.3
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCE--EEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-
Q 048309 56 RKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCN--YTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP- 132 (288)
Q Consensus 56 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~--v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~- 132 (288)
.....+++.+...++.+|||||||+|.++. +++ +.+ |+++|+++.+++.+++++... ++++++++|+.+++
T Consensus 8 ~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~-l~~--~~~~~v~avEid~~~~~~a~~~~~~~---~~v~~i~~D~~~~~~ 81 (252)
T 1qyr_A 8 FVIDSIVSAINPQKGQAMVEIGPGLAALTE-PVG--ERLDQLTVIELDRDLAARLQTHPFLG---PKLTIYQQDAMTFNF 81 (252)
T ss_dssp HHHHHHHHHHCCCTTCCEEEECCTTTTTHH-HHH--TTCSCEEEECCCHHHHHHHHTCTTTG---GGEEEECSCGGGCCH
T ss_pred HHHHHHHHhcCCCCcCEEEEECCCCcHHHH-hhh--CCCCeEEEEECCHHHHHHHHHHhccC---CceEEEECchhhCCH
Confidence 355677888888889999999999999999 654 356 999999999999999876542 47999999999976
Q ss_pred CC-----CCCCEEEEccch
Q 048309 133 KA-----KKYDRIISCEMM 146 (288)
Q Consensus 133 ~~-----~~fD~I~~~~~l 146 (288)
++ +..|.|+++...
T Consensus 82 ~~~~~~~~~~~~vvsNlPY 100 (252)
T 1qyr_A 82 GELAEKMGQPLRVFGNLPY 100 (252)
T ss_dssp HHHHHHHTSCEEEEEECCT
T ss_pred HHhhcccCCceEEEECCCC
Confidence 21 234677776553
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=98.85 E-value=7.7e-09 Score=98.77 Aligned_cols=102 Identities=14% Similarity=0.149 Sum_probs=75.7
Q ss_pred CCEEEEECCcccHHHHHH---HHcc-----------CCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCC--
Q 048309 70 EHEVLEIGCGWGTFAIEV---VRQT-----------GCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPK-- 133 (288)
Q Consensus 70 ~~~vLDiGcG~G~~~~~l---a~~~-----------~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~-- 133 (288)
+..|||+|||+|-++... ++.. ..+|++||.++.++...+.+.. +++.++|+++.+|++++..
T Consensus 410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng~~d~VtVI~gd~eev~lp~ 488 (745)
T 3ua3_A 410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RTWKRRVTIIESDMRSLPGIA 488 (745)
T ss_dssp EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HTTTTCSEEEESCGGGHHHHH
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cCCCCeEEEEeCchhhccccc
Confidence 458999999999996432 2211 2389999999987766665554 7887889999999999873
Q ss_pred ----CCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEE
Q 048309 134 ----AKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLV 172 (288)
Q Consensus 134 ----~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~ 172 (288)
.+++|+||+-..=.....+...+.+..+.+.|||||.++
T Consensus 489 ~~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp~Gi~i 531 (745)
T 3ua3_A 489 KDRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKPTTISI 531 (745)
T ss_dssp HHTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred ccCCCCcccEEEEeccccccchhccHHHHHHHHHhCCCCcEEE
Confidence 789999999543221112445667888889999999765
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=1.1e-08 Score=87.21 Aligned_cols=120 Identities=18% Similarity=0.166 Sum_probs=78.8
Q ss_pred HHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-
Q 048309 55 MRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP- 132 (288)
Q Consensus 55 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~- 132 (288)
.-++..+.++..++++.+|||+|||+|.++..++.+ +...++|+|++-.+....... ...+ .++..+..++....
T Consensus 60 A~KL~ei~ek~~l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~-~~~g--~~ii~~~~~~dv~~l 136 (277)
T 3evf_A 60 TAKLRWFHERGYVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNV-QSLG--WNIITFKDKTDIHRL 136 (277)
T ss_dssp HHHHHHHHHTTSSCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCC-CBTT--GGGEEEECSCCTTTS
T ss_pred HHHHHHHHHhCCCCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCccccccc-CcCC--CCeEEEeccceehhc
Confidence 346677777777788899999999999999998876 334688888874321000000 0001 14555666654444
Q ss_pred CCCCCCEEEEccchh----hhCHhhHHHHHHHHhcccccC-cEEEEEeec
Q 048309 133 KAKKYDRIISCEMME----AVGHEYMEEYFGCCESLLAKD-GLLVLQFSS 177 (288)
Q Consensus 133 ~~~~fD~I~~~~~l~----~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~~ 177 (288)
.+++||+|+|..+.+ .........+++.+.++|+|| |.|++..+.
T Consensus 137 ~~~~~DlVlsD~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~ 186 (277)
T 3evf_A 137 EPVKCDTLLCDIGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLA 186 (277)
T ss_dssp CCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESC
T ss_pred CCCCccEEEecCccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecC
Confidence 567899999987555 221111123578889999999 999996665
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.77 E-value=3.1e-08 Score=93.49 Aligned_cols=109 Identities=15% Similarity=0.190 Sum_probs=86.1
Q ss_pred CCCCCEEEEECCcccHHHHHHHHc----cCCEEEEEcCCHHHHHHHHHHHHHcCCC-CceEEEEcccCCC--C--CCCCC
Q 048309 67 VSKEHEVLEIGCGWGTFAIEVVRQ----TGCNYTGITLSAEQMKYAEMKVNEAGLQ-DHIRLYLCDYRQL--P--KAKKY 137 (288)
Q Consensus 67 ~~~~~~vLDiGcG~G~~~~~la~~----~~~~v~giD~s~~~~~~a~~~~~~~g~~-~~v~~~~~d~~~~--~--~~~~f 137 (288)
..++.+|+|.+||+|.+...+++. ...+++|+|+++.+++.|+.++...|+. .++.+.++|.... + ...+|
T Consensus 219 ~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~~~~f 298 (542)
T 3lkd_A 219 DKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEPTNF 298 (542)
T ss_dssp TCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSCCCB
T ss_pred CCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceecccccccccccc
Confidence 356789999999999998888775 2568999999999999999999888874 4689999998876 3 45789
Q ss_pred CEEEEccchhhh-------------------CH-h-hHHHHHHHHhcccc-cCcEEEEEe
Q 048309 138 DRIISCEMMEAV-------------------GH-E-YMEEYFGCCESLLA-KDGLLVLQF 175 (288)
Q Consensus 138 D~I~~~~~l~~~-------------------~~-~-~~~~~l~~~~~~Lk-pgG~l~~~~ 175 (288)
|+|+++..+..- ++ . .--.++..+.+.|+ |||++.+..
T Consensus 299 D~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~Vl 358 (542)
T 3lkd_A 299 DGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVL 358 (542)
T ss_dssp SEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEE
T ss_pred cEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEe
Confidence 999998655311 00 0 01248999999999 999988744
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.77 E-value=1.7e-07 Score=84.24 Aligned_cols=127 Identities=9% Similarity=0.115 Sum_probs=79.1
Q ss_pred HHHHHHHHHHcCCCC-----CCEEEEECCcccHHHHHHHHc----------------cCCEEEEEcCCHHHHHHHHHHHH
Q 048309 55 MRKHSLLIEKARVSK-----EHEVLEIGCGWGTFAIEVVRQ----------------TGCNYTGITLSAEQMKYAEMKVN 113 (288)
Q Consensus 55 ~~~~~~l~~~~~~~~-----~~~vLDiGcG~G~~~~~la~~----------------~~~~v~giD~s~~~~~~a~~~~~ 113 (288)
...+...++.+.... +.+|+|+|||+|.++..++.. +..+|...|+-.......-+.+.
T Consensus 33 ~~~~~~ai~~l~~~~~~~~~~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~ 112 (374)
T 3b5i_A 33 LHLLEETLENVHLNSSASPPPFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLP 112 (374)
T ss_dssp HHHHHHHHHTSCCCCSSSCCCEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSC
T ss_pred HHHHHHHHHHhhccccCCCCceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhh
Confidence 344555566665543 478999999999999887331 23456666755444322222111
Q ss_pred Hc-----------CCCCceEEEEc---ccCCCC-CCCCCCEEEEccchhhhCH---------------------------
Q 048309 114 EA-----------GLQDHIRLYLC---DYRQLP-KAKKYDRIISCEMMEAVGH--------------------------- 151 (288)
Q Consensus 114 ~~-----------g~~~~v~~~~~---d~~~~~-~~~~fD~I~~~~~l~~~~~--------------------------- 151 (288)
.. +...+--++.+ .+..-. +++++|+|+++.++|+++.
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v 192 (374)
T 3b5i_A 113 PLVSNTCMEECLAADGNRSYFVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKT 192 (374)
T ss_dssp CBCCCC--CCC---CCCBCSEEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHH
T ss_pred hhhhhcchhhhccccCCCceEEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHH
Confidence 10 00001112222 222222 6789999999999999841
Q ss_pred ---------hhHHHHHHHHhcccccCcEEEEEeecCCCc
Q 048309 152 ---------EYMEEYFGCCESLLAKDGLLVLQFSSTPDA 181 (288)
Q Consensus 152 ---------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 181 (288)
.+...+++..++.|+|||++++...+.++.
T Consensus 193 ~~ay~~Qf~~D~~~fL~~ra~eL~pGG~mvl~~~gr~~~ 231 (374)
T 3b5i_A 193 TTAYKRQFQADLAEFLRARAAEVKRGGAMFLVCLGRTSV 231 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEECCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCC
Confidence 155668999999999999999998876653
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=4.2e-08 Score=87.86 Aligned_cols=120 Identities=13% Similarity=0.117 Sum_probs=93.9
Q ss_pred HHHHcCCCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCC-----CceEEEEcccCCCC--
Q 048309 61 LIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQ-----DHIRLYLCDYRQLP-- 132 (288)
Q Consensus 61 l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~-----~~v~~~~~d~~~~~-- 132 (288)
....+++++|.+|||+.+|.|+=+.++++. ....|+++|+++.-++..+++++..+.. .++.+...|...++
T Consensus 140 ~~~~L~~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~ 219 (359)
T 4fzv_A 140 PVLALGLQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGEL 219 (359)
T ss_dssp HHHHHCCCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHH
T ss_pred HHHHhCCCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchh
Confidence 344567889999999999999999999886 3347999999999999999999877642 47899999998876
Q ss_pred CCCCCCEEEEccchhh---------------hCHh-------hHHHHHHHHhcccccCcEEEEEeecCCC
Q 048309 133 KAKKYDRIISCEMMEA---------------VGHE-------YMEEYFGCCESLLAKDGLLVLQFSSTPD 180 (288)
Q Consensus 133 ~~~~fD~I~~~~~l~~---------------~~~~-------~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 180 (288)
..+.||.|++...+.. ..+. -..+++..+.++|||||+++.++.+...
T Consensus 220 ~~~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl~~ 289 (359)
T 4fzv_A 220 EGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSLSH 289 (359)
T ss_dssp STTCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCCCT
T ss_pred ccccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCch
Confidence 5679999998643321 0111 1246788999999999999998887544
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=98.72 E-value=5.2e-08 Score=84.33 Aligned_cols=123 Identities=9% Similarity=0.033 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHHHHcC-CCCCCEEEEECCcccHHHHHHHHc------cCCEEEEEcCCHH-------------------
Q 048309 50 LKVAQMRKHSLLIEKAR-VSKEHEVLEIGCGWGTFAIEVVRQ------TGCNYTGITLSAE------------------- 103 (288)
Q Consensus 50 l~~a~~~~~~~l~~~~~-~~~~~~vLDiGcG~G~~~~~la~~------~~~~v~giD~s~~------------------- 103 (288)
+...+...+..+++.+. ...+..|||+|+..|..+..++.. ++.+|+++|..+.
T Consensus 86 v~~~r~~~L~~l~~~v~~~~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~ 165 (282)
T 2wk1_A 86 IGIKRLENIRQCVEDVIGNNVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHR 165 (282)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGG
T ss_pred cCHHHHHHHHHHHHHHHhcCCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCccccccccccccccccc
Confidence 44566667777777653 234569999999999999888654 2678999996421
Q ss_pred -------HHHHHHHHHHHcCCC-CceEEEEcccCC-CC--CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEE
Q 048309 104 -------QMKYAEMKVNEAGLQ-DHIRLYLCDYRQ-LP--KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLV 172 (288)
Q Consensus 104 -------~~~~a~~~~~~~g~~-~~v~~~~~d~~~-~~--~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~ 172 (288)
.++.++++++..|+. ++++++.+|+.+ ++ +.++||+|+...-.+ +....+++.+...|+|||+++
T Consensus 166 ~~~~~~~~~~~ar~n~~~~gl~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~y----~~~~~~Le~~~p~L~pGGiIv 241 (282)
T 2wk1_A 166 RNSVLAVSEEEVRRNFRNYDLLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDLY----ESTWDTLTNLYPKVSVGGYVI 241 (282)
T ss_dssp GHHHHCCCHHHHHHHHHHTTCCSTTEEEEESCHHHHSTTCCCCCEEEEEECCCSH----HHHHHHHHHHGGGEEEEEEEE
T ss_pred ccccchhHHHHHHHHHHHcCCCcCceEEEEeCHHHHHhhCCCCCEEEEEEcCCcc----ccHHHHHHHHHhhcCCCEEEE
Confidence 467789999999984 799999999976 34 357899999986532 345678999999999999999
Q ss_pred EEee
Q 048309 173 LQFS 176 (288)
Q Consensus 173 ~~~~ 176 (288)
+.+.
T Consensus 242 ~DD~ 245 (282)
T 2wk1_A 242 VDDY 245 (282)
T ss_dssp ESSC
T ss_pred EcCC
Confidence 8654
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=98.67 E-value=9.6e-09 Score=87.78 Aligned_cols=118 Identities=15% Similarity=0.191 Sum_probs=77.3
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEc--ccCCCC
Q 048309 56 RKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLC--DYRQLP 132 (288)
Q Consensus 56 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~--d~~~~~ 132 (288)
-++.++.++..+.++.+|||||||+|.++..+++. +...|+|+|++..+...+... ...+ .++..... |+..+
T Consensus 77 fKL~ei~eK~~Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~-~~~g--~~ii~~~~~~dv~~l- 152 (282)
T 3gcz_A 77 AKLRWMEERGYVKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMR-TTLG--WNLIRFKDKTDVFNM- 152 (282)
T ss_dssp HHHHHHHHTTSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCC-CBTT--GGGEEEECSCCGGGS-
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCcccccccc-ccCC--CceEEeeCCcchhhc-
Confidence 46667777777889999999999999999998865 445799999976532111100 0011 13333333 33333
Q ss_pred CCCCCCEEEEccchh----hhCHhhHHHHHHHHhcccccC--cEEEEEeec
Q 048309 133 KAKKYDRIISCEMME----AVGHEYMEEYFGCCESLLAKD--GLLVLQFSS 177 (288)
Q Consensus 133 ~~~~fD~I~~~~~l~----~~~~~~~~~~l~~~~~~Lkpg--G~l~~~~~~ 177 (288)
...++|+|+|..+.. .+.......+++-+.++|+|| |.|++-.+.
T Consensus 153 ~~~~~DvVLSDmApnsG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~ 203 (282)
T 3gcz_A 153 EVIPGDTLLCDIGESSPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLC 203 (282)
T ss_dssp CCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESC
T ss_pred CCCCcCEEEecCccCCCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEec
Confidence 457899999987655 121111123577788999999 999997765
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=98.56 E-value=1.3e-07 Score=81.24 Aligned_cols=85 Identities=13% Similarity=0.138 Sum_probs=71.7
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC----
Q 048309 57 KHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP---- 132 (288)
Q Consensus 57 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~---- 132 (288)
.+..+++.+.++++..++|.+||.|+.+..+++. +.+|+|+|.++.+++.+++ ++. ++++++++|+.+++
T Consensus 10 Ll~e~le~L~~~~gg~~VD~T~G~GGHS~~il~~-~g~VigiD~Dp~Ai~~A~~-L~~----~rv~lv~~~f~~l~~~L~ 83 (285)
T 1wg8_A 10 LYQEALDLLAVRPGGVYVDATLGGAGHARGILER-GGRVIGLDQDPEAVARAKG-LHL----PGLTVVQGNFRHLKRHLA 83 (285)
T ss_dssp THHHHHHHHTCCTTCEEEETTCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHH-TCC----TTEEEEESCGGGHHHHHH
T ss_pred HHHHHHHhhCCCCCCEEEEeCCCCcHHHHHHHHC-CCEEEEEeCCHHHHHHHHh-hcc----CCEEEEECCcchHHHHHH
Confidence 3567788888889999999999999999999997 7799999999999999988 543 48999999998874
Q ss_pred --CCCCCCEEEEccchh
Q 048309 133 --KAKKYDRIISCEMME 147 (288)
Q Consensus 133 --~~~~fD~I~~~~~l~ 147 (288)
..+++|.|++...+.
T Consensus 84 ~~g~~~vDgIL~DLGvS 100 (285)
T 1wg8_A 84 ALGVERVDGILADLGVS 100 (285)
T ss_dssp HTTCSCEEEEEEECSCC
T ss_pred HcCCCCcCEEEeCCccc
Confidence 125799999865443
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=98.53 E-value=2.4e-07 Score=89.87 Aligned_cols=107 Identities=7% Similarity=0.003 Sum_probs=77.5
Q ss_pred CCCCEEEEECCcccHHHHHHHHcc----CCEEEEEcCCHHHHHHH--HHHHHH----cCCCCceEEEEcccCCCC--CCC
Q 048309 68 SKEHEVLEIGCGWGTFAIEVVRQT----GCNYTGITLSAEQMKYA--EMKVNE----AGLQDHIRLYLCDYRQLP--KAK 135 (288)
Q Consensus 68 ~~~~~vLDiGcG~G~~~~~la~~~----~~~v~giD~s~~~~~~a--~~~~~~----~g~~~~v~~~~~d~~~~~--~~~ 135 (288)
.++.+|||.|||+|.++..+++.. ..+++|+|+++.+++.| +.++.. .++ ....+...|+.... ..+
T Consensus 320 ~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi-~~~~I~~dD~L~~~~~~~~ 398 (878)
T 3s1s_A 320 TEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSN-NAPTITGEDVCSLNPEDFA 398 (878)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTT-BCCEEECCCGGGCCGGGGT
T ss_pred CCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCC-CcceEEecchhcccccccC
Confidence 467899999999999999998763 24799999999999999 444433 233 12456667776643 457
Q ss_pred CCCEEEEccchhh-hC-H-------------------------hhHHHHHHHHhcccccCcEEEEEe
Q 048309 136 KYDRIISCEMMEA-VG-H-------------------------EYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 136 ~fD~I~~~~~l~~-~~-~-------------------------~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
+||+|+++..+.. .. . .....+++.+.+.|+|||++.+..
T Consensus 399 kFDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIl 465 (878)
T 3s1s_A 399 NVSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIM 465 (878)
T ss_dssp TEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred CCCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEE
Confidence 8999999877621 00 0 013457889999999999998844
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=1.2e-07 Score=84.81 Aligned_cols=108 Identities=18% Similarity=0.205 Sum_probs=81.5
Q ss_pred CCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHc---CC----CCceEEEEcccCCCC-----CCC
Q 048309 68 SKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEA---GL----QDHIRLYLCDYRQLP-----KAK 135 (288)
Q Consensus 68 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~---g~----~~~v~~~~~d~~~~~-----~~~ 135 (288)
.++++||-||.|.|..+..+.+++..+|+.||+++.+++.|++.+... .. .++++++.+|...+- ..+
T Consensus 204 ~~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~ 283 (381)
T 3c6k_A 204 YTGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGR 283 (381)
T ss_dssp CTTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTC
T ss_pred CCCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccC
Confidence 356899999999999999999886679999999999999999875321 01 135899999997643 346
Q ss_pred CCCEEEEccch-------hhhCH-hhHHHHHHHHhcccccCcEEEEEe
Q 048309 136 KYDRIISCEMM-------EAVGH-EYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 136 ~fD~I~~~~~l-------~~~~~-~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
+||+|+....- ..... .-..++++.+.+.|+|||+++.+.
T Consensus 284 ~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~ 331 (381)
T 3c6k_A 284 EFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQG 331 (381)
T ss_dssp CEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 89999987421 11111 123678999999999999998754
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=1.5e-06 Score=78.26 Aligned_cols=146 Identities=16% Similarity=0.176 Sum_probs=91.5
Q ss_pred CCEEEEECCcccHHHHHHHHc------------------cCCEEEEEcCC-----------HHHHHHHHHHHHHcCCCCc
Q 048309 70 EHEVLEIGCGWGTFAIEVVRQ------------------TGCNYTGITLS-----------AEQMKYAEMKVNEAGLQDH 120 (288)
Q Consensus 70 ~~~vLDiGcG~G~~~~~la~~------------------~~~~v~giD~s-----------~~~~~~a~~~~~~~g~~~~ 120 (288)
..+|+|+||++|.++..+... +..+|...|+- +.+.+..++ ..|-..+
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~---~~g~~~~ 129 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEK---ENGRKIG 129 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHH---HTCCCTT
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhh---hccCCCC
Confidence 578999999999998877653 23468888876 444433222 2221112
Q ss_pred eEEEEcccCCC---C-CCCCCCEEEEccchhhhCHh-------------------------------------hHHHHHH
Q 048309 121 IRLYLCDYRQL---P-KAKKYDRIISCEMMEAVGHE-------------------------------------YMEEYFG 159 (288)
Q Consensus 121 v~~~~~d~~~~---~-~~~~fD~I~~~~~l~~~~~~-------------------------------------~~~~~l~ 159 (288)
.-++.+....+ . +.+++|+|+++.++|+++.. +...+++
T Consensus 130 ~~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~ 209 (384)
T 2efj_A 130 SCLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLR 209 (384)
T ss_dssp SEEEEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 35666655543 2 78999999999999997321 1223477
Q ss_pred HHhcccccCcEEEEEeecCCCc--ccc---cccC-chh----------hHhhhccCCCCCCCHHHHHHHHHHcCCh
Q 048309 160 CCESLLAKDGLLVLQFSSTPDA--RYN---EYRL-SSD----------FIKEYIFPGGCLPSLSRITSAMAAASSL 219 (288)
Q Consensus 160 ~~~~~LkpgG~l~~~~~~~~~~--~~~---~~~~-~~~----------~~~~~i~~~~~~p~~~~~~~~~~~~~~~ 219 (288)
...+.|+|||++++...+.+.. ... .... ... -+..+..| ...|+.+++.+.+++.++|
T Consensus 210 ~Ra~eL~pGG~mvl~~~gr~~~~~~~~~~~~l~~al~~lv~eGli~~ek~dsf~~P-~y~ps~~E~~~~le~~g~F 284 (384)
T 2efj_A 210 IHSEELISRGRMLLTFICKEDEFDHPNSMDLLEMSINDLVIEGHLEEEKLDSFNVP-IYAPSTEEVKRIVEEEGSF 284 (384)
T ss_dssp HHHHHEEEEEEEEEEEECCCTTTCCCCHHHHHHHHHHHHHHHTSSCHHHHHTCCCS-BCCCCHHHHHHHHHHHCSE
T ss_pred HHHHHhccCCeEEEEEecCCCcccCcccHHHHHHHHHHHHHhCCcchhhhcccCCc-ccCCCHHHHHHHHHHcCCc
Confidence 7799999999999999887654 211 0000 000 01112223 3568899999888887544
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.39 E-value=1.8e-07 Score=80.05 Aligned_cols=106 Identities=16% Similarity=0.190 Sum_probs=71.5
Q ss_pred CCCCEEEEECCcccHHHHHHHH--------cc-----CCEEEEEcCCH---HHHH-----------HHHHHHHHc-----
Q 048309 68 SKEHEVLEIGCGWGTFAIEVVR--------QT-----GCNYTGITLSA---EQMK-----------YAEMKVNEA----- 115 (288)
Q Consensus 68 ~~~~~vLDiGcG~G~~~~~la~--------~~-----~~~v~giD~s~---~~~~-----------~a~~~~~~~----- 115 (288)
.++.+|||||+|+|..+..+++ .+ ..+++++|..| +.++ .+++.++..
T Consensus 59 ~~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~ 138 (257)
T 2qy6_A 59 HPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLP 138 (257)
T ss_dssp SSEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCS
T ss_pred CCCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhcccccc
Confidence 4567999999999998877654 22 14899999776 4444 556665531
Q ss_pred -----CCC---CceEEEEcccCC-CC-CC----CCCCEEEEccchhhhCHh-hHHHHHHHHhcccccCcEEEE
Q 048309 116 -----GLQ---DHIRLYLCDYRQ-LP-KA----KKYDRIISCEMMEAVGHE-YMEEYFGCCESLLAKDGLLVL 173 (288)
Q Consensus 116 -----g~~---~~v~~~~~d~~~-~~-~~----~~fD~I~~~~~l~~~~~~-~~~~~l~~~~~~LkpgG~l~~ 173 (288)
.+. .+++++.+|+.+ ++ .+ ..||+|+....-..-.++ -..++++.+.++|+|||+++.
T Consensus 139 g~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~t 211 (257)
T 2qy6_A 139 GCHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLAT 211 (257)
T ss_dssp EEEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEE
T ss_pred chhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEE
Confidence 011 367899999877 33 22 279999986421111111 136799999999999998884
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=1.3e-06 Score=77.96 Aligned_cols=94 Identities=4% Similarity=0.008 Sum_probs=66.5
Q ss_pred CCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CCCCCCEEEEccc
Q 048309 67 VSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAKKYDRIISCEM 145 (288)
Q Consensus 67 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~~fD~I~~~~~ 145 (288)
+.+|.++||+||++|+++..++++ +.+|++||..+ +-. .+... ++|+++++|...+. ..+.+|+|+|.-+
T Consensus 209 l~~G~~vlDLGAaPGGWT~~l~~r-g~~V~aVD~~~-l~~----~l~~~---~~V~~~~~d~~~~~~~~~~~D~vvsDm~ 279 (375)
T 4auk_A 209 LANGMWAVDLGACPGGWTYQLVKR-NMWVYSVDNGP-MAQ----SLMDT---GQVTWLREDGFKFRPTRSNISWMVCDMV 279 (375)
T ss_dssp SCTTCEEEEETCTTCHHHHHHHHT-TCEEEEECSSC-CCH----HHHTT---TCEEEECSCTTTCCCCSSCEEEEEECCS
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHC-CCEEEEEEhhh-cCh----hhccC---CCeEEEeCccccccCCCCCcCEEEEcCC
Confidence 568999999999999999999987 78999999764 111 11111 47999999999887 5578999999766
Q ss_pred hhhhCHhhHHHHHHHHhcccccCcEEE
Q 048309 146 MEAVGHEYMEEYFGCCESLLAKDGLLV 172 (288)
Q Consensus 146 l~~~~~~~~~~~l~~~~~~LkpgG~l~ 172 (288)
... ......+.++...+..++.++
T Consensus 280 ~~p---~~~~~l~~~wl~~~~~~~aI~ 303 (375)
T 4auk_A 280 EKP---AKVAALMAQWLVNGWCRETIF 303 (375)
T ss_dssp SCH---HHHHHHHHHHHHTTSCSEEEE
T ss_pred CCh---HHhHHHHHHHHhccccceEEE
Confidence 432 333444444444444445443
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=5.2e-06 Score=68.89 Aligned_cols=123 Identities=16% Similarity=0.197 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEc-ccCCC
Q 048309 54 QMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLC-DYRQL 131 (288)
Q Consensus 54 ~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~-d~~~~ 131 (288)
..-++..+.++..+.++.+|+|+||++|.++.+.+.. ...+|+|+|+...-.+. -...+..|+ ..+++..+ |+..+
T Consensus 63 a~~KL~ei~ek~~l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~-P~~~~s~gw-n~v~fk~gvDv~~~ 140 (267)
T 3p8z_A 63 GSAKLQWFVERNMVIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEE-PVPMSTYGW-NIVKLMSGKDVFYL 140 (267)
T ss_dssp HHHHHHHHHHTTSSCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCC-CCCCCCTTT-TSEEEECSCCGGGC
T ss_pred HHHHHHHHHHhcCCCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccC-cchhhhcCc-CceEEEeccceeec
Confidence 3356777788878889999999999999999988887 33479999986642210 001123344 46899999 98776
Q ss_pred CCCCCCCEEEEccchhhhCH----hhHHHHHHHHhcccccCcEEEEEeecCCC
Q 048309 132 PKAKKYDRIISCEMMEAVGH----EYMEEYFGCCESLLAKDGLLVLQFSSTPD 180 (288)
Q Consensus 132 ~~~~~fD~I~~~~~l~~~~~----~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 180 (288)
++ .++|+|+|.-.=..-.+ +.-..+++-+.++|++ |-|++-.+....
T Consensus 141 ~~-~~~DtllcDIgeSs~~~~vE~~RtlrvLela~~wL~~-~~fc~KVl~py~ 191 (267)
T 3p8z_A 141 PP-EKCDTLLCDIGESSPSPTVEESRTIRVLKMVEPWLKN-NQFCIKVLNPYM 191 (267)
T ss_dssp CC-CCCSEEEECCCCCCSCHHHHHHHHHHHHHHHGGGCSS-CEEEEEESCCCS
T ss_pred CC-ccccEEEEecCCCCCChhhhhhHHHHHHHHHHHhccc-CCEEEEEccCCC
Confidence 65 67999999643211111 1123367777899998 788886555444
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=5.1e-07 Score=77.67 Aligned_cols=118 Identities=15% Similarity=0.143 Sum_probs=73.3
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-C
Q 048309 56 RKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-K 133 (288)
Q Consensus 56 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~ 133 (288)
-++..+.++--+.++.+|||+||++|.++..+++. ....|+|+|+...+...... ....+ .++.....++.... .
T Consensus 68 ~KL~ei~ek~l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~-~~~~~--~~iv~~~~~~di~~l~ 144 (300)
T 3eld_A 68 AKIRWLHERGYLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIH-MQTLG--WNIVKFKDKSNVFTMP 144 (300)
T ss_dssp HHHHHHHHHTSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCC-CCBTT--GGGEEEECSCCTTTSC
T ss_pred HHHHHHHHhCCCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEecccccccccc-ccccC--CceEEeecCceeeecC
Confidence 35556666633567889999999999999999975 34478999987532100000 00001 12333333222222 4
Q ss_pred CCCCCEEEEccchhhhCHh-----hHHHHHHHHhcccccC-cEEEEEeec
Q 048309 134 AKKYDRIISCEMMEAVGHE-----YMEEYFGCCESLLAKD-GLLVLQFSS 177 (288)
Q Consensus 134 ~~~fD~I~~~~~l~~~~~~-----~~~~~l~~~~~~Lkpg-G~l~~~~~~ 177 (288)
++.+|+|+|..+.. .+.. ....++.-+.++|+|| |.|++..+.
T Consensus 145 ~~~~DlVlsD~APn-sG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~ 193 (300)
T 3eld_A 145 TEPSDTLLCDIGES-SSNPLVERDRTMKVLENFERWKHVNTENFCVKVLA 193 (300)
T ss_dssp CCCCSEEEECCCCC-CSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESS
T ss_pred CCCcCEEeecCcCC-CCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecc
Confidence 57899999976655 2211 1133477788999999 999997665
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=98.32 E-value=6.6e-07 Score=68.96 Aligned_cols=87 Identities=9% Similarity=0.011 Sum_probs=62.4
Q ss_pred CCCEEEEECCccc-HHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCC--CCCCEEEEccc
Q 048309 69 KEHEVLEIGCGWG-TFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKA--KKYDRIISCEM 145 (288)
Q Consensus 69 ~~~~vLDiGcG~G-~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~--~~fD~I~~~~~ 145 (288)
++.+|||||||.| ..+..|+++.+..|+++|+++..++ +++.|+.+.... +.||+|++...
T Consensus 35 ~~~rVlEVG~G~g~~vA~~La~~~g~~V~atDInp~Av~----------------~v~dDiF~P~~~~Y~~~DLIYsirP 98 (153)
T 2k4m_A 35 PGTRVVEVGAGRFLYVSDYIRKHSKVDLVLTDIKPSHGG----------------IVRDDITSPRMEIYRGAALIYSIRP 98 (153)
T ss_dssp SSSEEEEETCTTCCHHHHHHHHHSCCEEEEECSSCSSTT----------------EECCCSSSCCHHHHTTEEEEEEESC
T ss_pred CCCcEEEEccCCChHHHHHHHHhCCCeEEEEECCccccc----------------eEEccCCCCcccccCCcCEEEEcCC
Confidence 5679999999999 6999999755889999999996543 888999885522 58999988643
Q ss_pred hhhhCHhhHHHHHHHHhcccccCcEEEEEeecC
Q 048309 146 MEAVGHEYMEEYFGCCESLLAKDGLLVLQFSST 178 (288)
Q Consensus 146 l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 178 (288)
- .++...+.++.+. -|.-+++...+.
T Consensus 99 P-----~El~~~i~~lA~~--v~adliI~pL~~ 124 (153)
T 2k4m_A 99 P-----AEIHSSLMRVADA--VGARLIIKPLTG 124 (153)
T ss_dssp C-----TTTHHHHHHHHHH--HTCEEEEECBTT
T ss_pred C-----HHHHHHHHHHHHH--cCCCEEEEcCCC
Confidence 2 3334444444332 377788866553
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=98.32 E-value=7.4e-07 Score=79.63 Aligned_cols=113 Identities=12% Similarity=0.076 Sum_probs=77.4
Q ss_pred CCCEEEEECCcccHHHHHHHHc-----------------cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCC-
Q 048309 69 KEHEVLEIGCGWGTFAIEVVRQ-----------------TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQ- 130 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~~la~~-----------------~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~- 130 (288)
..-+|+|+||++|.++..+... +..+|+..|+-.......-+.+....-..+.-++.+....
T Consensus 51 ~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSF 130 (359)
T 1m6e_X 51 TRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSF 130 (359)
T ss_dssp SEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCS
T ss_pred CceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhh
Confidence 3467999999999877654332 2357889998777766555444321000022444444433
Q ss_pred --CC-CCCCCCEEEEccchhhhCH-------------------------------hhHHHHHHHHhcccccCcEEEEEee
Q 048309 131 --LP-KAKKYDRIISCEMMEAVGH-------------------------------EYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 131 --~~-~~~~fD~I~~~~~l~~~~~-------------------------------~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
-. +.+++|+|+++.++|+++. .+...+++...+.|+|||++++...
T Consensus 131 y~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~~ 210 (359)
T 1m6e_X 131 YGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTIL 210 (359)
T ss_dssp SSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEE
T ss_pred hhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEEe
Confidence 23 7899999999999999732 2345678889999999999999988
Q ss_pred cCCCc
Q 048309 177 STPDA 181 (288)
Q Consensus 177 ~~~~~ 181 (288)
+.++.
T Consensus 211 gr~~~ 215 (359)
T 1m6e_X 211 GRRSE 215 (359)
T ss_dssp ECSSS
T ss_pred cCCCC
Confidence 77654
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=98.30 E-value=4.1e-06 Score=71.75 Aligned_cols=121 Identities=16% Similarity=0.185 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccC-CEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEc-ccCCC
Q 048309 54 QMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTG-CNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLC-DYRQL 131 (288)
Q Consensus 54 ~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~-d~~~~ 131 (288)
-.-++..+.++..+.++.+||||||++|.++.+++...+ ..|+|+|+...--+.- ...+..++ .-+.+..+ |+..+
T Consensus 79 ~~~KL~ei~~~~~l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P-~~~~ql~w-~lV~~~~~~Dv~~l 156 (321)
T 3lkz_A 79 GTAKLRWLVERRFLEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEP-QLVQSYGW-NIVTMKSGVDVFYR 156 (321)
T ss_dssp HHHHHHHHHHTTSCCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCC-CCCCBTTG-GGEEEECSCCTTSS
T ss_pred HHHHHHHHHHhcCCCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCc-chhhhcCC-cceEEEeccCHhhC
Confidence 335667778887788999999999999999998887733 4699999876411000 00011222 24788887 88777
Q ss_pred CCCCCCCEEEEccchhhhCHh-----hHHHHHHHHhcccccC-cEEEEEeecC
Q 048309 132 PKAKKYDRIISCEMMEAVGHE-----YMEEYFGCCESLLAKD-GLLVLQFSST 178 (288)
Q Consensus 132 ~~~~~fD~I~~~~~l~~~~~~-----~~~~~l~~~~~~Lkpg-G~l~~~~~~~ 178 (288)
++ ..+|+|+|.-. +.-+.. .-..+|+-+.++|++| |-|++-.+..
T Consensus 157 ~~-~~~D~ivcDig-eSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl~p 207 (321)
T 3lkz_A 157 PS-ECCDTLLCDIG-ESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVKVLCP 207 (321)
T ss_dssp CC-CCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEESCT
T ss_pred CC-CCCCEEEEECc-cCCCChhhhhhHHHHHHHHHHHHhccCCCcEEEEEcCC
Confidence 65 67999999754 322111 1123677778899999 8888866554
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=98.29 E-value=6.9e-06 Score=77.39 Aligned_cols=118 Identities=16% Similarity=0.186 Sum_probs=86.5
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc--------------cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceE
Q 048309 57 KHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ--------------TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIR 122 (288)
Q Consensus 57 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~--------------~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~ 122 (288)
....+++.+.+.++.+|+|.+||+|.+.....++ ....++|+|+++.+...|+.++--.|.. ...
T Consensus 205 Vv~lmv~l~~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~-~~~ 283 (530)
T 3ufb_A 205 VVRFMVEVMDPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLE-YPR 283 (530)
T ss_dssp HHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCS-CCE
T ss_pred HHHHHHHhhccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCc-ccc
Confidence 3455667777888899999999999998776543 1246999999999999999988877873 467
Q ss_pred EEEcccCCCC-----CCCCCCEEEEccchhhh-------------C-HhhHHHHHHHHhcccc-------cCcEEEEEe
Q 048309 123 LYLCDYRQLP-----KAKKYDRIISCEMMEAV-------------G-HEYMEEYFGCCESLLA-------KDGLLVLQF 175 (288)
Q Consensus 123 ~~~~d~~~~~-----~~~~fD~I~~~~~l~~~-------------~-~~~~~~~l~~~~~~Lk-------pgG~l~~~~ 175 (288)
+..+|....+ ...+||+|+++..+.-- + ...-..++..+.+.|| |||++.+..
T Consensus 284 I~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~avVl 362 (530)
T 3ufb_A 284 IDPENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRAAVVV 362 (530)
T ss_dssp EECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEEEEEE
T ss_pred ccccccccCchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceEEEEe
Confidence 8888887654 23579999999776311 0 0112346677777775 799988854
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=1.2e-06 Score=73.72 Aligned_cols=115 Identities=16% Similarity=0.196 Sum_probs=71.4
Q ss_pred HHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccC-CEEEEEcCCHHHHHHHHHHHHH--cCCCCceEEEEc-ccCC
Q 048309 55 MRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTG-CNYTGITLSAEQMKYAEMKVNE--AGLQDHIRLYLC-DYRQ 130 (288)
Q Consensus 55 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~giD~s~~~~~~a~~~~~~--~g~~~~v~~~~~-d~~~ 130 (288)
.-++.++-++.-++++.+|+|+||+.|.++..+++..+ ..|.|.++.... . ... ... .|+ .-+++.++ |+.+
T Consensus 59 ayKL~EIdeK~likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~-~-~~P-~~~~~~Gv-~~i~~~~G~Df~~ 134 (269)
T 2px2_A 59 TAKLRWLVERRFVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG-H-EEP-MLMQSYGW-NIVTMKSGVDVFY 134 (269)
T ss_dssp HHHHHHHHHTTSCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT-S-CCC-CCCCSTTG-GGEEEECSCCGGG
T ss_pred HHHHHHHHHcCCCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc-c-cCC-CcccCCCc-eEEEeeccCCccC
Confidence 34566666666678899999999999999999988611 133344333210 0 000 000 111 11355557 9987
Q ss_pred CCCCCCCCEEEEccch-------hhhCHhhHHHHHHHHhcccccCc-EEEEEeec
Q 048309 131 LPKAKKYDRIISCEMM-------EAVGHEYMEEYFGCCESLLAKDG-LLVLQFSS 177 (288)
Q Consensus 131 ~~~~~~fD~I~~~~~l-------~~~~~~~~~~~l~~~~~~LkpgG-~l~~~~~~ 177 (288)
++ +..+|+|+|.-+- .|. ..+. ++.-+.++|+||| .|++-.+.
T Consensus 135 ~~-~~~~DvVLSDMAPnSG~~~vD~~--Rs~~-aL~~A~~~Lk~gG~~FvvKVFq 185 (269)
T 2px2_A 135 KP-SEISDTLLCDIGESSPSAEIEEQ--RTLR-ILEMVSDWLSRGPKEFCIKILC 185 (269)
T ss_dssp SC-CCCCSEEEECCCCCCSCHHHHHH--HHHH-HHHHHHHHHTTCCSEEEEEESC
T ss_pred CC-CCCCCEEEeCCCCCCCccHHHHH--HHHH-HHHHHHHHhhcCCcEEEEEECC
Confidence 55 3579999996532 222 1222 6777789999999 99987766
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=98.10 E-value=1.2e-05 Score=70.07 Aligned_cols=58 Identities=21% Similarity=0.164 Sum_probs=49.5
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHc
Q 048309 56 RKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEA 115 (288)
Q Consensus 56 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~ 115 (288)
..+..+++... .++..|||++||+|..+..+++. +.+++|+|+++.+++.|+++++..
T Consensus 223 ~l~~~~i~~~~-~~~~~vlD~f~GsGt~~~~a~~~-g~~~~g~e~~~~~~~~a~~r~~~~ 280 (297)
T 2zig_A 223 ELAERLVRMFS-FVGDVVLDPFAGTGTTLIAAARW-GRRALGVELVPRYAQLAKERFARE 280 (297)
T ss_dssp HHHHHHHHHHC-CTTCEEEETTCTTTHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCCEEEECCCCCCHHHHHHHHc-CCeEEEEeCCHHHHHHHHHHHHHh
Confidence 34566666665 57889999999999999998875 789999999999999999998765
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.89 E-value=1e-05 Score=71.03 Aligned_cols=86 Identities=10% Similarity=0.095 Sum_probs=70.6
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC--
Q 048309 57 KHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-- 132 (288)
Q Consensus 57 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-- 132 (288)
.+..+++.+.++++..++|..||.|+.+..+++. +..+|+|+|.++.+++.++ ++ . ..+++++.+++.++.
T Consensus 45 Ll~Evl~~L~i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL--~--~~Rv~lv~~nF~~l~~~ 119 (347)
T 3tka_A 45 LLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TI--D--DPRFSIIHGPFSALGEY 119 (347)
T ss_dssp TTHHHHHHTCCCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TC--C--CTTEEEEESCGGGHHHH
T ss_pred cHHHHHHhhCCCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hh--c--CCcEEEEeCCHHHHHHH
Confidence 4578889999999999999999999999999987 4579999999999999884 33 1 258999999998864
Q ss_pred --C---CCCCCEEEEccchh
Q 048309 133 --K---AKKYDRIISCEMME 147 (288)
Q Consensus 133 --~---~~~fD~I~~~~~l~ 147 (288)
. .+++|.|+....+.
T Consensus 120 L~~~g~~~~vDgILfDLGVS 139 (347)
T 3tka_A 120 VAERDLIGKIDGILLDLGVS 139 (347)
T ss_dssp HHHTTCTTCEEEEEEECSCC
T ss_pred HHhcCCCCcccEEEECCccC
Confidence 1 13699999876543
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=97.68 E-value=0.0001 Score=65.67 Aligned_cols=72 Identities=17% Similarity=0.189 Sum_probs=59.2
Q ss_pred HHHHHHHHHcCCCC------CCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEccc
Q 048309 56 RKHSLLIEKARVSK------EHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDY 128 (288)
Q Consensus 56 ~~~~~l~~~~~~~~------~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~ 128 (288)
...+.+++.+++.+ +..|||||.|.|.++..|++. ...+|+++|+++..+...++.. . .++++++.+|+
T Consensus 39 ~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~-~---~~~l~ii~~D~ 114 (353)
T 1i4w_A 39 TVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF-E---GSPLQILKRDP 114 (353)
T ss_dssp HHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT-T---TSSCEEECSCT
T ss_pred HHHHHHHHhccCCcccCcCCCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc-c---CCCEEEEECCc
Confidence 45567777777653 589999999999999999985 3468999999999999888876 2 25899999999
Q ss_pred CCC
Q 048309 129 RQL 131 (288)
Q Consensus 129 ~~~ 131 (288)
.++
T Consensus 115 l~~ 117 (353)
T 1i4w_A 115 YDW 117 (353)
T ss_dssp TCH
T ss_pred cch
Confidence 765
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00015 Score=61.89 Aligned_cols=59 Identities=25% Similarity=0.298 Sum_probs=48.3
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcC
Q 048309 56 RKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAG 116 (288)
Q Consensus 56 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g 116 (288)
..+..+++... .++..|||..||+|..+....+. +.+++|+|+++..++.++++++..+
T Consensus 200 ~l~~~~i~~~~-~~~~~vlD~f~GsGtt~~~a~~~-gr~~ig~e~~~~~~~~~~~r~~~~~ 258 (260)
T 1g60_A 200 DLIERIIRASS-NPNDLVLDCFMGSGTTAIVAKKL-GRNFIGCDMNAEYVNQANFVLNQLE 258 (260)
T ss_dssp HHHHHHHHHHC-CTTCEEEESSCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHhC-CCCCEEEECCCCCCHHHHHHHHc-CCeEEEEeCCHHHHHHHHHHHHhcc
Confidence 34556666554 67889999999999999988774 8899999999999999999987654
|
| >2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A* | Back alignment and structure |
|---|
Probab=97.56 E-value=0.0011 Score=58.09 Aligned_cols=120 Identities=14% Similarity=0.146 Sum_probs=88.0
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCC--CCceEEEEcccCCCC--
Q 048309 57 KHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGL--QDHIRLYLCDYRQLP-- 132 (288)
Q Consensus 57 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~--~~~v~~~~~d~~~~~-- 132 (288)
.+...+..+-......|++||||-=.....+....+..++=|| .|..++..++.+.+.+. +.+..++.+|+.+ .
T Consensus 90 ~~d~~v~~~~~~g~~QvV~LGaGlDTra~Rl~~~~~~~v~evD-~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d-~~~ 167 (310)
T 2uyo_A 90 FFDTYFNNAVIDGIRQFVILASGLDSRAYRLDWPTGTTVYEID-QPKVLAYKSTTLAEHGVTPTADRREVPIDLRQ-DWP 167 (310)
T ss_dssp HHHHHHHHHHHTTCCEEEEETCTTCCHHHHSCCCTTCEEEEEE-CHHHHHHHHHHHHHTTCCCSSEEEEEECCTTS-CHH
T ss_pred HHHHHHHHHHHhCCCeEEEeCCCCCchhhhccCCCCcEEEEcC-CHHHHHHHHHHHHhcCCCCCCCeEEEecchHh-hHH
Confidence 4444444432122357999999987766655422247899999 59999999999976442 3578899999986 3
Q ss_pred ---CC-----CCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecC
Q 048309 133 ---KA-----KKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSST 178 (288)
Q Consensus 133 ---~~-----~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 178 (288)
.. ...=++++.++++++++++...+++.+...+.||+.+++.....
T Consensus 168 ~~l~~~g~d~~~Pt~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~gs~l~~d~~~~ 221 (310)
T 2uyo_A 168 PALRSAGFDPSARTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETSPL 221 (310)
T ss_dssp HHHHHTTCCTTSCEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECCCT
T ss_pred HHHHhccCCCCCCEEEEEechHhhCCHHHHHHHHHHHHHhCCCCeEEEEEecCC
Confidence 11 23447788899999998899999999999999999999876543
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.0004 Score=59.54 Aligned_cols=112 Identities=18% Similarity=0.156 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHc-----CCCCCCEEEEECC------cccHHHHHHHHc-c-CCEEEEEcCCHHHHHHHHHHHHHcCCCCc
Q 048309 54 QMRKHSLLIEKA-----RVSKEHEVLEIGC------GWGTFAIEVVRQ-T-GCNYTGITLSAEQMKYAEMKVNEAGLQDH 120 (288)
Q Consensus 54 ~~~~~~~l~~~~-----~~~~~~~vLDiGc------G~G~~~~~la~~-~-~~~v~giD~s~~~~~~a~~~~~~~g~~~~ 120 (288)
...+..++++.+ ..+.+.+|||+|+ .+|.. .+.+. + ++.|+++|+.+-. .. ..
T Consensus 89 nv~kytqlcqyl~~~~~~vp~gmrVLDLGA~s~kg~APGS~--VLr~~~p~g~~VVavDL~~~~-----------sd-a~ 154 (344)
T 3r24_A 89 NVAKYTQLCQYLNTLTLAVPYNMRVIHFGAGSDKGVAPGTA--VLRQWLPTGTLLVDSDLNDFV-----------SD-AD 154 (344)
T ss_dssp HHHHHHHHHHHHTTSCCCCCTTCEEEEESCCCTTSBCHHHH--HHHHHSCTTCEEEEEESSCCB-----------CS-SS
T ss_pred eHHHHHHHHHHhccccEeecCCCEEEeCCCCCCCCCCCcHH--HHHHhCCCCcEEEEeeCcccc-----------cC-CC
Confidence 344556666665 3567899999996 67774 22222 3 3599999997721 11 12
Q ss_pred eEEEEcccCCCCCCCCCCEEEEccchhhh---C------HhhHHHHHHHHhcccccCcEEEEEeecCCC
Q 048309 121 IRLYLCDYRQLPKAKKYDRIISCEMMEAV---G------HEYMEEYFGCCESLLAKDGLLVLQFSSTPD 180 (288)
Q Consensus 121 v~~~~~d~~~~~~~~~fD~I~~~~~l~~~---~------~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 180 (288)
.++++|..+....++||+|+|.-.-... . ..-.+.++.-+.+.|+|||.|++-.+-...
T Consensus 155 -~~IqGD~~~~~~~~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQGsg 222 (344)
T 3r24_A 155 -STLIGDCATVHTANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSW 222 (344)
T ss_dssp -EEEESCGGGEEESSCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSC
T ss_pred -eEEEccccccccCCCCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEecCCC
Confidence 4599998776656899999996432111 0 012456677788999999999997665443
|
| >1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A | Back alignment and structure |
|---|
Probab=97.38 E-value=0.0016 Score=57.64 Aligned_cols=110 Identities=16% Similarity=0.223 Sum_probs=85.1
Q ss_pred CCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcC--------------------CCCceEEEEc
Q 048309 68 SKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAG--------------------LQDHIRLYLC 126 (288)
Q Consensus 68 ~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g--------------------~~~~v~~~~~ 126 (288)
.+...|+.+|||.......+... ++..++-||. |+.++.-++.+.+.+ .+.+.+++..
T Consensus 96 ~~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~ 174 (334)
T 1rjd_A 96 NEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAAC 174 (334)
T ss_dssp CSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEEC
T ss_pred CCCcEEEEeCCCCccHHHHhcCcCCCCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEec
Confidence 35578999999999998888764 5667888887 888888877776652 1357899999
Q ss_pred ccCCCC----------CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCC
Q 048309 127 DYRQLP----------KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTP 179 (288)
Q Consensus 127 d~~~~~----------~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 179 (288)
|+.+.. ..+...++++-+++.+++++...++++.+.+.. |+|.+++.+...+
T Consensus 175 DL~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~~~~~v~~e~i~~ 236 (334)
T 1rjd_A 175 DLNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWISYDPIGG 236 (334)
T ss_dssp CTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEECCC
T ss_pred CCCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-CCcEEEEEeccCC
Confidence 998731 124567899999999999999999999998877 7777765555444
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=97.27 E-value=8.1e-05 Score=63.89 Aligned_cols=103 Identities=16% Similarity=0.046 Sum_probs=80.1
Q ss_pred CCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCC-----CCCCCCCEEEEcc
Q 048309 70 EHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQL-----PKAKKYDRIISCE 144 (288)
Q Consensus 70 ~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~-----~~~~~fD~I~~~~ 144 (288)
+..+||+=+|+|.+++.+.+. +.+++.+|.++..++..+++++. .++++++..|.... ++..+||+|++..
T Consensus 92 ~~~~LDlfaGSGaLgiEaLS~-~d~~vfvE~~~~a~~~L~~Nl~~---~~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDP 167 (283)
T 2oo3_A 92 LNSTLSYYPGSPYFAINQLRS-QDRLYLCELHPTEYNFLLKLPHF---NKKVYVNHTDGVSKLNALLPPPEKRGLIFIDP 167 (283)
T ss_dssp SSSSCCEEECHHHHHHHHSCT-TSEEEEECCSHHHHHHHTTSCCT---TSCEEEECSCHHHHHHHHCSCTTSCEEEEECC
T ss_pred CCCceeEeCCcHHHHHHHcCC-CCeEEEEeCCHHHHHHHHHHhCc---CCcEEEEeCcHHHHHHHhcCCCCCccEEEECC
Confidence 457899999999999998884 68999999999999999988865 25799999997542 2445799999998
Q ss_pred chhhhCHhhHHHHHHHHhc--ccccCcEEEEEeecC
Q 048309 145 MMEAVGHEYMEEYFGCCES--LLAKDGLLVLQFSST 178 (288)
Q Consensus 145 ~l~~~~~~~~~~~l~~~~~--~LkpgG~l~~~~~~~ 178 (288)
.++.- .+....++.+.+ .+.|+|++++-....
T Consensus 168 PYe~k--~~~~~vl~~L~~~~~r~~~Gi~v~WYPi~ 201 (283)
T 2oo3_A 168 SYERK--EEYKEIPYAIKNAYSKFSTGLYCVWYPVV 201 (283)
T ss_dssp CCCST--THHHHHHHHHHHHHHHCTTSEEEEEEEES
T ss_pred CCCCC--cHHHHHHHHHHHhCccCCCeEEEEEEecc
Confidence 87743 355666655544 557899999855443
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=97.25 E-value=0.001 Score=59.48 Aligned_cols=101 Identities=12% Similarity=0.103 Sum_probs=70.3
Q ss_pred HHHHHcCCCCCCEEEEECCcc-cHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCC----C-
Q 048309 60 LLIEKARVSKEHEVLEIGCGW-GTFAIEVVRQTGC-NYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQL----P- 132 (288)
Q Consensus 60 ~l~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~----~- 132 (288)
.+.+..+++++.+||-+|+|. |..+..+++..++ +|+++|.+++..+.+++. |.. .++..+-.++ .
T Consensus 181 al~~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~l----Ga~---~vi~~~~~~~~~~~~~ 253 (371)
T 1f8f_A 181 ACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL----GAT---HVINSKTQDPVAAIKE 253 (371)
T ss_dssp HHHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH----TCS---EEEETTTSCHHHHHHH
T ss_pred HHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc----CCC---EEecCCccCHHHHHHH
Confidence 344566788999999999987 8899999887666 799999999988887654 321 2332221111 1
Q ss_pred -CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 133 -KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 133 -~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
..+.+|+|+-.-.- ...++.+.+.|+++|++++..
T Consensus 254 ~~~gg~D~vid~~g~--------~~~~~~~~~~l~~~G~iv~~G 289 (371)
T 1f8f_A 254 ITDGGVNFALESTGS--------PEILKQGVDALGILGKIAVVG 289 (371)
T ss_dssp HTTSCEEEEEECSCC--------HHHHHHHHHTEEEEEEEEECC
T ss_pred hcCCCCcEEEECCCC--------HHHHHHHHHHHhcCCEEEEeC
Confidence 22379999864321 245677789999999998743
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0003 Score=77.27 Aligned_cols=102 Identities=19% Similarity=0.226 Sum_probs=55.4
Q ss_pred CCCCEEEEECCcccHHHHHHHHcc------CCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCC-C-CCCCCCE
Q 048309 68 SKEHEVLEIGCGWGTFAIEVVRQT------GCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQL-P-KAKKYDR 139 (288)
Q Consensus 68 ~~~~~vLDiGcG~G~~~~~la~~~------~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~-~-~~~~fD~ 139 (288)
.+..+|||||.|+|..+..+.+.. ..+++..|+|+...+.++++++.. +++.-..|..+. + ..++||+
T Consensus 1239 ~~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~----di~~~~~d~~~~~~~~~~~ydl 1314 (2512)
T 2vz8_A 1239 SPKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQL----HVTQGQWDPANPAPGSLGKADL 1314 (2512)
T ss_dssp SSEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHH----TEEEECCCSSCCCC-----CCE
T ss_pred CCCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhc----ccccccccccccccCCCCceeE
Confidence 356799999999998766554431 137899999998888888777653 233322344332 1 3467999
Q ss_pred EEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 140 IISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 140 I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
|++..+++.. .+....+.+++++|||||.+++..
T Consensus 1315 via~~vl~~t--~~~~~~l~~~~~lL~p~G~l~~~e 1348 (2512)
T 2vz8_A 1315 LVCNCALATL--GDPAVAVGNMAATLKEGGFLLLHT 1348 (2512)
T ss_dssp EEEECC----------------------CCEEEEEE
T ss_pred EEEccccccc--ccHHHHHHHHHHhcCCCcEEEEEe
Confidence 9999999766 677889999999999999998865
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0022 Score=57.04 Aligned_cols=99 Identities=22% Similarity=0.222 Sum_probs=68.7
Q ss_pred HHHcCCCCCCEEEEECCcc-cHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcc---cCC----CC
Q 048309 62 IEKARVSKEHEVLEIGCGW-GTFAIEVVRQTGC-NYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCD---YRQ----LP 132 (288)
Q Consensus 62 ~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d---~~~----~~ 132 (288)
++..+++++.+||-+|+|. |..+..+++..++ +|+++|.+++..+.+++ .|.+ .++..+ ..+ +.
T Consensus 164 l~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~---~vi~~~~~~~~~~~~~i~ 236 (356)
T 1pl8_A 164 CRRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKE----IGAD---LVLQISKESPQEIARKVE 236 (356)
T ss_dssp HHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTCS---EEEECSSCCHHHHHHHHH
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hCCC---EEEcCcccccchHHHHHH
Confidence 3566788999999999986 8899999987677 89999999988877754 3432 233222 011 11
Q ss_pred --CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 133 --KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 133 --~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
..+.+|+|+-.-.- ...++.+.+.|++||++++..
T Consensus 237 ~~~~~g~D~vid~~g~--------~~~~~~~~~~l~~~G~iv~~G 273 (356)
T 1pl8_A 237 GQLGCKPEVTIECTGA--------EASIQAGIYATRSGGTLVLVG 273 (356)
T ss_dssp HHHTSCCSEEEECSCC--------HHHHHHHHHHSCTTCEEEECS
T ss_pred HHhCCCCCEEEECCCC--------hHHHHHHHHHhcCCCEEEEEe
Confidence 12579999865321 234566778999999998743
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00097 Score=59.11 Aligned_cols=97 Identities=23% Similarity=0.223 Sum_probs=69.5
Q ss_pred HHHHcCCCCCCEEEEECCcc-cHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCE
Q 048309 61 LIEKARVSKEHEVLEIGCGW-GTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDR 139 (288)
Q Consensus 61 l~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~ 139 (288)
.+....+++|.+||-+|+|. |..+..+++..+++|+++|.+++..+.+++ .|.. .++ .+...+. ..+|+
T Consensus 168 ~l~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~----lGa~---~v~-~~~~~~~--~~~D~ 237 (348)
T 3two_A 168 PLKFSKVTKGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDALS----MGVK---HFY-TDPKQCK--EELDF 237 (348)
T ss_dssp HHHHTTCCTTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHH----TTCS---EEE-SSGGGCC--SCEEE
T ss_pred HHHhcCCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHh----cCCC---eec-CCHHHHh--cCCCE
Confidence 44556888999999999986 889999998878899999999988877754 3432 233 3333332 37999
Q ss_pred EEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 140 IISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 140 I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
|+-...-. ..++.+.+.|+++|++++..
T Consensus 238 vid~~g~~--------~~~~~~~~~l~~~G~iv~~G 265 (348)
T 3two_A 238 IISTIPTH--------YDLKDYLKLLTYNGDLALVG 265 (348)
T ss_dssp EEECCCSC--------CCHHHHHTTEEEEEEEEECC
T ss_pred EEECCCcH--------HHHHHHHHHHhcCCEEEEEC
Confidence 98643211 13555678999999999853
|
| >3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A* | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0064 Score=51.52 Aligned_cols=115 Identities=11% Similarity=0.036 Sum_probs=77.5
Q ss_pred HHHHHHcCCCCCCEEEEECCcccHHHHHHHHc--------cCCEEEEEc-----CCHH-------------------HHH
Q 048309 59 SLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ--------TGCNYTGIT-----LSAE-------------------QMK 106 (288)
Q Consensus 59 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~--------~~~~v~giD-----~s~~-------------------~~~ 106 (288)
..+.+.+...+| .|+|+||-.|..+..++.- ...+|+++| +.+. ..+
T Consensus 60 ~~l~~~i~~vpG-~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~ 138 (257)
T 3tos_A 60 DALYRQVLDVPG-VIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPA 138 (257)
T ss_dssp HHHHHHTTTSCS-EEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHH
T ss_pred HHHHHHhhCCCC-eEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHH
Confidence 455555543444 8999999999988886541 246899999 3210 011
Q ss_pred HHHHHH------HHcCC-CCceEEEEcccCCCC-------CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEE
Q 048309 107 YAEMKV------NEAGL-QDHIRLYLCDYRQLP-------KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLV 172 (288)
Q Consensus 107 ~a~~~~------~~~g~-~~~v~~~~~d~~~~~-------~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~ 172 (288)
..++.+ +..+. +++++++.+++.+.- +..++|+|+...-.+ +.....++.+...|+|||+++
T Consensus 139 ~l~~~l~~~~~~~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D~Y----~~t~~~le~~~p~l~~GGvIv 214 (257)
T 3tos_A 139 YLKEVLDAHECSDFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLDLY----EPTKAVLEAIRPYLTKGSIVA 214 (257)
T ss_dssp HHHHHHHHHHTTSTTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCCCH----HHHHHHHHHHGGGEEEEEEEE
T ss_pred HHHHHHHHHhhhhhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCccc----chHHHHHHHHHHHhCCCcEEE
Confidence 112111 22344 478999999997632 345799999987532 455678889999999999999
Q ss_pred EEeecC
Q 048309 173 LQFSST 178 (288)
Q Consensus 173 ~~~~~~ 178 (288)
+.++..
T Consensus 215 ~DD~~~ 220 (257)
T 3tos_A 215 FDELDN 220 (257)
T ss_dssp ESSTTC
T ss_pred EcCCCC
Confidence 977643
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0019 Score=57.00 Aligned_cols=99 Identities=12% Similarity=0.179 Sum_probs=69.3
Q ss_pred HHHHcCCCCCCEEEEECCcc-cHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-----CC
Q 048309 61 LIEKARVSKEHEVLEIGCGW-GTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-----KA 134 (288)
Q Consensus 61 l~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-----~~ 134 (288)
.+....++++.+||-+|+|. |..+..+++..+++|+++|.+++..+.+++ .|.. .++..+-.++. ..
T Consensus 158 ~l~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~----lGa~---~~i~~~~~~~~~~~~~~~ 230 (340)
T 3s2e_A 158 GLKVTDTRPGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLARR----LGAE---VAVNARDTDPAAWLQKEI 230 (340)
T ss_dssp HHHTTTCCTTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHH----TTCS---EEEETTTSCHHHHHHHHH
T ss_pred HHHHcCCCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH----cCCC---EEEeCCCcCHHHHHHHhC
Confidence 34666788999999999886 999999998878899999999998887755 3431 22222111111 12
Q ss_pred CCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 135 KKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 135 ~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
+.+|+|+-... -...++.+.+.|+++|++++.
T Consensus 231 g~~d~vid~~g--------~~~~~~~~~~~l~~~G~iv~~ 262 (340)
T 3s2e_A 231 GGAHGVLVTAV--------SPKAFSQAIGMVRRGGTIALN 262 (340)
T ss_dssp SSEEEEEESSC--------CHHHHHHHHHHEEEEEEEEEC
T ss_pred CCCCEEEEeCC--------CHHHHHHHHHHhccCCEEEEe
Confidence 36888876422 134566777899999999874
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=96.92 E-value=0.002 Score=57.13 Aligned_cols=101 Identities=13% Similarity=0.065 Sum_probs=70.7
Q ss_pred HHHHcCCCCCCEEEEECCcc-cHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCC-------
Q 048309 61 LIEKARVSKEHEVLEIGCGW-GTFAIEVVRQTGC-NYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQL------- 131 (288)
Q Consensus 61 l~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~------- 131 (288)
.++...++++.+||-+|+|. |..+..+++..++ +|+++|.+++.++.+++. |. -.++..+-.++
T Consensus 158 al~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~l----Ga---~~vi~~~~~~~~~~v~~~ 230 (352)
T 3fpc_A 158 GAELANIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEY----GA---TDIINYKNGDIVEQILKA 230 (352)
T ss_dssp HHHHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHH----TC---CEEECGGGSCHHHHHHHH
T ss_pred HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh----CC---ceEEcCCCcCHHHHHHHH
Confidence 34677888999999999986 8999999988676 799999999888877664 43 12332221111
Q ss_pred CCCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEee
Q 048309 132 PKAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 132 ~~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
.....+|+|+-...- ...++.+.+.|++||++++...
T Consensus 231 t~g~g~D~v~d~~g~--------~~~~~~~~~~l~~~G~~v~~G~ 267 (352)
T 3fpc_A 231 TDGKGVDKVVIAGGD--------VHTFAQAVKMIKPGSDIGNVNY 267 (352)
T ss_dssp TTTCCEEEEEECSSC--------TTHHHHHHHHEEEEEEEEECCC
T ss_pred cCCCCCCEEEECCCC--------hHHHHHHHHHHhcCCEEEEecc
Confidence 123479999864221 2345667789999999987543
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0043 Score=55.47 Aligned_cols=99 Identities=18% Similarity=0.192 Sum_probs=69.6
Q ss_pred HHHcCCCCCCEEEEECCcc-cHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCC--------
Q 048309 62 IEKARVSKEHEVLEIGCGW-GTFAIEVVRQTGC-NYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQL-------- 131 (288)
Q Consensus 62 ~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~-------- 131 (288)
++...++++.+||-+|+|. |..+..+++..++ +|+++|.+++..+.+++. |.. .++...-.++
T Consensus 175 l~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l----Ga~---~vi~~~~~~~~~~i~~~~ 247 (370)
T 4ej6_A 175 VDLSGIKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEV----GAT---ATVDPSAGDVVEAIAGPV 247 (370)
T ss_dssp HHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHH----TCS---EEECTTSSCHHHHHHSTT
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc----CCC---EEECCCCcCHHHHHHhhh
Confidence 4677888999999999886 8899999988777 899999999988877653 432 2222111111
Q ss_pred -CCCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 132 -PKAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 132 -~~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
...+.+|+|+-.-. -...++.+.+.|++||++++..
T Consensus 248 ~~~~gg~Dvvid~~G--------~~~~~~~~~~~l~~~G~vv~~G 284 (370)
T 4ej6_A 248 GLVPGGVDVVIECAG--------VAETVKQSTRLAKAGGTVVILG 284 (370)
T ss_dssp SSSTTCEEEEEECSC--------CHHHHHHHHHHEEEEEEEEECS
T ss_pred hccCCCCCEEEECCC--------CHHHHHHHHHHhccCCEEEEEe
Confidence 11247999986422 1345667778999999998743
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0037 Score=56.40 Aligned_cols=105 Identities=18% Similarity=0.091 Sum_probs=70.4
Q ss_pred HHHcCCCCCCEEEEECCcc-cHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCC-C------
Q 048309 62 IEKARVSKEHEVLEIGCGW-GTFAIEVVRQTGC-NYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQL-P------ 132 (288)
Q Consensus 62 ~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~-~------ 132 (288)
+...+++++.+||-+|||. |..+..+++..++ +|+++|.+++.++.+++ .|. +++..+-.+. .
T Consensus 178 l~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa----~~i~~~~~~~~~~~~~~~ 249 (398)
T 2dph_A 178 CVSAGVKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSD----AGF----ETIDLRNSAPLRDQIDQI 249 (398)
T ss_dssp HHHTTCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHT----TTC----EEEETTSSSCHHHHHHHH
T ss_pred HHHcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCC----cEEcCCCcchHHHHHHHH
Confidence 3667888999999999987 9999999987677 89999999998877653 342 3332222222 1
Q ss_pred -CCCCCCEEEEccchhhhC------HhhHHHHHHHHhcccccCcEEEEE
Q 048309 133 -KAKKYDRIISCEMMEAVG------HEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 133 -~~~~fD~I~~~~~l~~~~------~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
....+|+|+-.-.-.... .......++.+.+.|++||++++.
T Consensus 250 ~~g~g~Dvvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~ 298 (398)
T 2dph_A 250 LGKPEVDCGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIP 298 (398)
T ss_dssp HSSSCEEEEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECC
T ss_pred hCCCCCCEEEECCCCccccccccccccccHHHHHHHHHHHhcCCEEEEe
Confidence 223799998654322100 001124577778999999998864
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0033 Score=55.97 Aligned_cols=102 Identities=13% Similarity=0.115 Sum_probs=71.3
Q ss_pred HHHHcCCCCCCEEEEECCcc-cHHHHHHHHccCCE-EEEEcCCHHHHHHHHHHHHHcCCCCceEEEEc-----ccCC---
Q 048309 61 LIEKARVSKEHEVLEIGCGW-GTFAIEVVRQTGCN-YTGITLSAEQMKYAEMKVNEAGLQDHIRLYLC-----DYRQ--- 130 (288)
Q Consensus 61 l~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~~-v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~-----d~~~--- 130 (288)
.++..++++|.+||-+|+|. |..+.++++..+++ |+++|.+++..+.+++. .. .-+.+... |+.+
T Consensus 171 ~l~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-~~----~~~~~~~~~~~~~~~~~~v~ 245 (363)
T 3m6i_A 171 GLQRAGVRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEI-CP----EVVTHKVERLSAEESAKKIV 245 (363)
T ss_dssp HHHHHTCCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH-CT----TCEEEECCSCCHHHHHHHHH
T ss_pred HHHHcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-ch----hcccccccccchHHHHHHHH
Confidence 34667888999999999886 89999999887776 99999999999988875 21 11232211 1111
Q ss_pred -CCCCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 131 -LPKAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 131 -~~~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
......+|+|+-.-.- ...++.+.+.|++||++++..
T Consensus 246 ~~t~g~g~Dvvid~~g~--------~~~~~~~~~~l~~~G~iv~~G 283 (363)
T 3m6i_A 246 ESFGGIEPAVALECTGV--------ESSIAAAIWAVKFGGKVFVIG 283 (363)
T ss_dssp HHTSSCCCSEEEECSCC--------HHHHHHHHHHSCTTCEEEECC
T ss_pred HHhCCCCCCEEEECCCC--------hHHHHHHHHHhcCCCEEEEEc
Confidence 1124579999964321 235666778999999998754
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0092 Score=52.82 Aligned_cols=99 Identities=19% Similarity=0.211 Sum_probs=68.9
Q ss_pred HHHcCCCCCCEEEEECCcc-cHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEccc-CCCC-------
Q 048309 62 IEKARVSKEHEVLEIGCGW-GTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDY-RQLP------- 132 (288)
Q Consensus 62 ~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~-~~~~------- 132 (288)
+...+++++.+||-+|+|. |..+..+++..+++|+++|.+++..+.+++ .|.+ .++..+- .+..
T Consensus 161 l~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~----lGa~---~~~~~~~~~~~~~~i~~~~ 233 (352)
T 1e3j_A 161 CRRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKN----CGAD---VTLVVDPAKEEESSIIERI 233 (352)
T ss_dssp HHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH----TTCS---EEEECCTTTSCHHHHHHHH
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH----hCCC---EEEcCcccccHHHHHHHHh
Confidence 3566788999999999886 888899988778889999999988877754 3432 2222211 1211
Q ss_pred C---CCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 133 K---AKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 133 ~---~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
. ...+|+|+-...- ...++.+.+.|+++|+++...
T Consensus 234 ~~~~g~g~D~vid~~g~--------~~~~~~~~~~l~~~G~iv~~G 271 (352)
T 1e3j_A 234 RSAIGDLPNVTIDCSGN--------EKCITIGINITRTGGTLMLVG 271 (352)
T ss_dssp HHHSSSCCSEEEECSCC--------HHHHHHHHHHSCTTCEEEECS
T ss_pred ccccCCCCCEEEECCCC--------HHHHHHHHHHHhcCCEEEEEe
Confidence 1 3579999865321 234566778999999998743
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0064 Score=54.81 Aligned_cols=104 Identities=15% Similarity=0.086 Sum_probs=71.2
Q ss_pred HHHcCCCCCCEEEEECCcc-cHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCC-----CC--
Q 048309 62 IEKARVSKEHEVLEIGCGW-GTFAIEVVRQTGC-NYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQ-----LP-- 132 (288)
Q Consensus 62 ~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~-----~~-- 132 (288)
+...+++++.+||-+|+|. |..+.++++..++ .|+++|.+++.++.+++ .|. +.+.-.-.+ +.
T Consensus 178 l~~~~~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~----lGa----~~i~~~~~~~~~~~v~~~ 249 (398)
T 1kol_A 178 AVTAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKA----QGF----EIADLSLDTPLHEQIAAL 249 (398)
T ss_dssp HHHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTC----EEEETTSSSCHHHHHHHH
T ss_pred HHHcCCCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHH----cCC----cEEccCCcchHHHHHHHH
Confidence 3456788999999999886 9999999988676 79999999998887754 343 333221111 11
Q ss_pred -CCCCCCEEEEccchh---------hhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 133 -KAKKYDRIISCEMME---------AVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 133 -~~~~fD~I~~~~~l~---------~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
....+|+|+-.-.-. |. ......++.+.+.|++||++++..
T Consensus 250 t~g~g~Dvvid~~G~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~G~iv~~G 300 (398)
T 1kol_A 250 LGEPEVDCAVDAVGFEARGHGHEGAKH--EAPATVLNSLMQVTRVAGKIGIPG 300 (398)
T ss_dssp HSSSCEEEEEECCCTTCBCSSTTGGGS--BCTTHHHHHHHHHEEEEEEEEECS
T ss_pred hCCCCCCEEEECCCCcccccccccccc--cchHHHHHHHHHHHhcCCEEEEec
Confidence 224799998654321 11 223456778889999999998743
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0039 Score=54.33 Aligned_cols=92 Identities=21% Similarity=0.298 Sum_probs=65.0
Q ss_pred HHcCCCCCCEEEEECCcc-cHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCEEE
Q 048309 63 EKARVSKEHEVLEIGCGW-GTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRII 141 (288)
Q Consensus 63 ~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~ 141 (288)
+...++++.+||-+|+|. |..+.++++..+++|++++ +++..+.+++. |. -.++ .|...+ .+.+|+|+
T Consensus 136 ~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~-~~~~~~~~~~l----Ga---~~v~-~d~~~v--~~g~Dvv~ 204 (315)
T 3goh_A 136 EKIPLTKQREVLIVGFGAVNNLLTQMLNNAGYVVDLVS-ASLSQALAAKR----GV---RHLY-REPSQV--TQKYFAIF 204 (315)
T ss_dssp TTSCCCSCCEEEEECCSHHHHHHHHHHHHHTCEEEEEC-SSCCHHHHHHH----TE---EEEE-SSGGGC--CSCEEEEE
T ss_pred hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEE-ChhhHHHHHHc----CC---CEEE-cCHHHh--CCCccEEE
Confidence 667788999999999975 8999999988788999999 88888877653 32 1233 242222 56899988
Q ss_pred EccchhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 142 SCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 142 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
-.-.- ..+..+.+.|+++|+++..
T Consensus 205 d~~g~---------~~~~~~~~~l~~~G~~v~~ 228 (315)
T 3goh_A 205 DAVNS---------QNAAALVPSLKANGHIICI 228 (315)
T ss_dssp CC----------------TTGGGEEEEEEEEEE
T ss_pred ECCCc---------hhHHHHHHHhcCCCEEEEE
Confidence 53211 1124567999999999875
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0083 Score=48.32 Aligned_cols=94 Identities=19% Similarity=0.200 Sum_probs=63.8
Q ss_pred HHcCCCCCCEEEEECC--cccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC--------
Q 048309 63 EKARVSKEHEVLEIGC--GWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-------- 132 (288)
Q Consensus 63 ~~~~~~~~~~vLDiGc--G~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-------- 132 (288)
+..+++++++||..|+ |.|..+..+++..+++|+++|.+++..+.+++ .|.. .++ |..+..
T Consensus 32 ~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~----~g~~---~~~--d~~~~~~~~~~~~~ 102 (198)
T 1pqw_A 32 EVGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSR----LGVE---YVG--DSRSVDFADEILEL 102 (198)
T ss_dssp TTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHT----TCCS---EEE--ETTCSTHHHHHHHH
T ss_pred HHhCCCCCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCCC---EEe--eCCcHHHHHHHHHH
Confidence 4457788999999994 55887777777667899999999887765543 3431 122 322211
Q ss_pred -CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 133 -KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 133 -~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
....+|+++.+.. ...++.+.+.|++||+++..
T Consensus 103 ~~~~~~D~vi~~~g---------~~~~~~~~~~l~~~G~~v~~ 136 (198)
T 1pqw_A 103 TDGYGVDVVLNSLA---------GEAIQRGVQILAPGGRFIEL 136 (198)
T ss_dssp TTTCCEEEEEECCC---------THHHHHHHHTEEEEEEEEEC
T ss_pred hCCCCCeEEEECCc---------hHHHHHHHHHhccCCEEEEE
Confidence 1246999986532 13466777999999998874
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0037 Score=55.73 Aligned_cols=98 Identities=18% Similarity=0.153 Sum_probs=69.3
Q ss_pred HHcCCCCCCEEEEECCcc-cHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-------CC
Q 048309 63 EKARVSKEHEVLEIGCGW-GTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-------KA 134 (288)
Q Consensus 63 ~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-------~~ 134 (288)
+...++++.+||-+|+|. |..+..+++..+++|+++|.+++..+.+++. |.. .++..+-.++. ..
T Consensus 183 ~~~~~~~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~l----Ga~---~vi~~~~~~~~~~v~~~~~g 255 (363)
T 3uog_A 183 EKGHLRAGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSREKLDRAFAL----GAD---HGINRLEEDWVERVYALTGD 255 (363)
T ss_dssp TTTCCCTTCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH----TCS---EEEETTTSCHHHHHHHHHTT
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCchhHHHHHHc----CCC---EEEcCCcccHHHHHHHHhCC
Confidence 556788999999999886 8889999888788999999999988877653 431 23332212211 23
Q ss_pred CCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEee
Q 048309 135 KKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 135 ~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
..+|+|+-... ...+..+.+.|+++|++++...
T Consensus 256 ~g~D~vid~~g---------~~~~~~~~~~l~~~G~iv~~G~ 288 (363)
T 3uog_A 256 RGADHILEIAG---------GAGLGQSLKAVAPDGRISVIGV 288 (363)
T ss_dssp CCEEEEEEETT---------SSCHHHHHHHEEEEEEEEEECC
T ss_pred CCceEEEECCC---------hHHHHHHHHHhhcCCEEEEEec
Confidence 47999986533 1234556689999999988543
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0045 Score=55.41 Aligned_cols=100 Identities=17% Similarity=0.176 Sum_probs=69.4
Q ss_pred HHHHcCCCCCCEEEEECCcc-cHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcc--cCCC----C
Q 048309 61 LIEKARVSKEHEVLEIGCGW-GTFAIEVVRQTGC-NYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCD--YRQL----P 132 (288)
Q Consensus 61 l~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d--~~~~----~ 132 (288)
+.+...++++.+||-+|+|. |..+..+++..++ +|+++|.+++.++.+++ .|.+ .++... -.++ .
T Consensus 185 l~~~~~~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~----lGa~---~vi~~~~~~~~~~~~i~ 257 (378)
T 3uko_A 185 VWNTAKVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKK----FGVN---EFVNPKDHDKPIQEVIV 257 (378)
T ss_dssp HHTTTCCCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHT----TTCC---EEECGGGCSSCHHHHHH
T ss_pred HHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCc---EEEccccCchhHHHHHH
Confidence 44666788999999999985 8999999988676 89999999988877654 3432 222221 1111 0
Q ss_pred --CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccC-cEEEEEe
Q 048309 133 --KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKD-GLLVLQF 175 (288)
Q Consensus 133 --~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~ 175 (288)
..+.+|+|+-.-. -...++.+.+.|++| |++++..
T Consensus 258 ~~~~gg~D~vid~~g--------~~~~~~~~~~~l~~g~G~iv~~G 295 (378)
T 3uko_A 258 DLTDGGVDYSFECIG--------NVSVMRAALECCHKGWGTSVIVG 295 (378)
T ss_dssp HHTTSCBSEEEECSC--------CHHHHHHHHHTBCTTTCEEEECS
T ss_pred HhcCCCCCEEEECCC--------CHHHHHHHHHHhhccCCEEEEEc
Confidence 2348999986422 134567778999997 9988744
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0074 Score=53.87 Aligned_cols=101 Identities=16% Similarity=0.103 Sum_probs=69.0
Q ss_pred HHHHHcCCCCCCEEEEECCcc-cHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEccc--CCC----
Q 048309 60 LLIEKARVSKEHEVLEIGCGW-GTFAIEVVRQTGC-NYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDY--RQL---- 131 (288)
Q Consensus 60 ~l~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~--~~~---- 131 (288)
.+.+..+++++.+||-+|+|. |..+..+++..++ +|+++|.+++..+.+++ .|.. .++..+- .++
T Consensus 182 ~l~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~---~vi~~~~~~~~~~~~i 254 (373)
T 1p0f_A 182 AAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIE----LGAT---ECLNPKDYDKPIYEVI 254 (373)
T ss_dssp HHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH----TTCS---EEECGGGCSSCHHHHH
T ss_pred HHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCc---EEEecccccchHHHHH
Confidence 344556788999999999886 8889999887676 89999999988877754 3431 2222111 111
Q ss_pred C--CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccC-cEEEEEe
Q 048309 132 P--KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKD-GLLVLQF 175 (288)
Q Consensus 132 ~--~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~ 175 (288)
. ..+.+|+|+-.-.- ...++.+.+.|+++ |++++..
T Consensus 255 ~~~t~gg~Dvvid~~g~--------~~~~~~~~~~l~~~~G~iv~~G 293 (373)
T 1p0f_A 255 CEKTNGGVDYAVECAGR--------IETMMNALQSTYCGSGVTVVLG 293 (373)
T ss_dssp HHHTTSCBSEEEECSCC--------HHHHHHHHHTBCTTTCEEEECC
T ss_pred HHHhCCCCCEEEECCCC--------HHHHHHHHHHHhcCCCEEEEEc
Confidence 1 22479999864321 24566777999999 9988743
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0023 Score=57.22 Aligned_cols=99 Identities=18% Similarity=0.266 Sum_probs=67.1
Q ss_pred HHHHcCCCCCCEEEEECCcc-cHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCC-CC-CCCCC
Q 048309 61 LIEKARVSKEHEVLEIGCGW-GTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQ-LP-KAKKY 137 (288)
Q Consensus 61 l~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~-~~-~~~~f 137 (288)
.+...+++++.+||-+|+|. |..+..+++..+++|+++|.+++..+.+++. |.. .++...-.+ .. ..+.+
T Consensus 186 al~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~l----Ga~---~vi~~~~~~~~~~~~~g~ 258 (369)
T 1uuf_A 186 PLRHWQAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKAL----GAD---EVVNSRNADEMAAHLKSF 258 (369)
T ss_dssp HHHHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHH----TCS---EEEETTCHHHHHTTTTCE
T ss_pred HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc----CCc---EEeccccHHHHHHhhcCC
Confidence 34456788999999999986 8889999887788999999999888877652 431 222211111 01 12579
Q ss_pred CEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 138 DRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 138 D~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
|+|+-.-.-. ..++.+.+.|+++|+++..
T Consensus 259 Dvvid~~g~~--------~~~~~~~~~l~~~G~iv~~ 287 (369)
T 1uuf_A 259 DFILNTVAAP--------HNLDDFTTLLKRDGTMTLV 287 (369)
T ss_dssp EEEEECCSSC--------CCHHHHHTTEEEEEEEEEC
T ss_pred CEEEECCCCH--------HHHHHHHHHhccCCEEEEe
Confidence 9998653211 1245566899999998874
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.54 E-value=0.025 Score=51.10 Aligned_cols=100 Identities=9% Similarity=0.020 Sum_probs=65.3
Q ss_pred CCCCCCEEEEECCcc-cHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCC-------CCCCC
Q 048309 66 RVSKEHEVLEIGCGW-GTFAIEVVRQTGC-NYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQL-------PKAKK 136 (288)
Q Consensus 66 ~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~-------~~~~~ 136 (288)
.+++|.+||-+|+|. |..+..+++..++ +|+++|.+++..+.+++. |. -.++..+-.++ .....
T Consensus 210 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~l----Ga---~~vi~~~~~~~~~~i~~~t~g~g 282 (404)
T 3ip1_A 210 GIRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKEL----GA---DHVIDPTKENFVEAVLDYTNGLG 282 (404)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHH----TC---SEEECTTTSCHHHHHHHHTTTCC
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc----CC---CEEEcCCCCCHHHHHHHHhCCCC
Confidence 678899999999886 8889999988777 999999999988888654 32 12332211111 12347
Q ss_pred CCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 137 YDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 137 fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
+|+|+-.-.-.. ......++.+.+.++++|++++..
T Consensus 283 ~D~vid~~g~~~---~~~~~~~~~l~~~~~~~G~iv~~G 318 (404)
T 3ip1_A 283 AKLFLEATGVPQ---LVWPQIEEVIWRARGINATVAIVA 318 (404)
T ss_dssp CSEEEECSSCHH---HHHHHHHHHHHHCSCCCCEEEECS
T ss_pred CCEEEECCCCcH---HHHHHHHHHHHhccCCCcEEEEeC
Confidence 999986432210 012333333345559999998843
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=96.53 E-value=0.01 Score=52.96 Aligned_cols=100 Identities=14% Similarity=0.131 Sum_probs=68.6
Q ss_pred HHHHcCCCCCCEEEEECCcc-cHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEccc--CCC----C
Q 048309 61 LIEKARVSKEHEVLEIGCGW-GTFAIEVVRQTGC-NYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDY--RQL----P 132 (288)
Q Consensus 61 l~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~--~~~----~ 132 (288)
+.+..+++++.+||-+|+|. |..+..+++..++ +|+++|.+++..+.+++. |.. .++...- .++ .
T Consensus 182 l~~~~~~~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~l----Ga~---~vi~~~~~~~~~~~~v~ 254 (373)
T 2fzw_A 182 AVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEF----GAT---ECINPQDFSKPIQEVLI 254 (373)
T ss_dssp HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHH----TCS---EEECGGGCSSCHHHHHH
T ss_pred HHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc----CCc---eEeccccccccHHHHHH
Confidence 34556788999999999886 8888999887677 899999999888877643 431 2222110 111 1
Q ss_pred --CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccC-cEEEEEe
Q 048309 133 --KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKD-GLLVLQF 175 (288)
Q Consensus 133 --~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~ 175 (288)
..+.+|+|+-.-.- ...++.+.+.|+++ |++++..
T Consensus 255 ~~~~~g~D~vid~~g~--------~~~~~~~~~~l~~~~G~iv~~G 292 (373)
T 2fzw_A 255 EMTDGGVDYSFECIGN--------VKVMRAALEACHKGWGVSVVVG 292 (373)
T ss_dssp HHTTSCBSEEEECSCC--------HHHHHHHHHTBCTTTCEEEECS
T ss_pred HHhCCCCCEEEECCCc--------HHHHHHHHHhhccCCcEEEEEe
Confidence 12479999864321 23466777999999 9988743
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=96.53 E-value=0.012 Score=52.74 Aligned_cols=72 Identities=14% Similarity=0.190 Sum_probs=57.0
Q ss_pred CEEEEECCcccHHHHHHHHccCCE-EEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC---------CCCCCCEE
Q 048309 71 HEVLEIGCGWGTFAIEVVRQTGCN-YTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP---------KAKKYDRI 140 (288)
Q Consensus 71 ~~vLDiGcG~G~~~~~la~~~~~~-v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~---------~~~~fD~I 140 (288)
.+++|+-||.|.++.-+.+. |.+ +.++|+++.+++..+.++ ++..++++|+.++. ....+|+|
T Consensus 3 ~~vidLFsG~GGlslG~~~a-G~~~v~avE~d~~a~~t~~~N~------~~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i 75 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARA-GFDVKMAVEIDQHAINTHAINF------PRSLHVQEDVSLLNAEIIKGFFKNDMPIDGI 75 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHH-TCEEEEEECSCHHHHHHHHHHC------TTSEEECCCGGGCCHHHHHHHHCSCCCCCEE
T ss_pred CeEEEEccCcCHHHHHHHHC-CCcEEEEEeCCHHHHHHHHHhC------CCCceEecChhhcCHHHHHhhcccCCCeeEE
Confidence 58999999999999998776 554 669999999888777664 24678899998874 13689999
Q ss_pred EEccchhhh
Q 048309 141 ISCEMMEAV 149 (288)
Q Consensus 141 ~~~~~l~~~ 149 (288)
+....+..+
T Consensus 76 ~ggpPCQ~f 84 (376)
T 3g7u_A 76 IGGPPCQGF 84 (376)
T ss_dssp EECCCCCTT
T ss_pred EecCCCCCc
Confidence 987765544
|
| >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0088 Score=54.30 Aligned_cols=65 Identities=9% Similarity=0.064 Sum_probs=52.4
Q ss_pred CCCCCEEEEECCcccHHHHHHH-Hc-c-CCEEEEEcCCHHHHHHHHHHHHH--c-CCCCceEEEEcccCCC
Q 048309 67 VSKEHEVLEIGCGWGTFAIEVV-RQ-T-GCNYTGITLSAEQMKYAEMKVNE--A-GLQDHIRLYLCDYRQL 131 (288)
Q Consensus 67 ~~~~~~vLDiGcG~G~~~~~la-~~-~-~~~v~giD~s~~~~~~a~~~~~~--~-g~~~~v~~~~~d~~~~ 131 (288)
+.++..|+|+|++.|..+..++ +. + ..+|+++|++|...+..+++++. + +.+.+++++..-+.+-
T Consensus 224 l~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~~~v~~~~~al~~~ 294 (409)
T 2py6_A 224 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGCGAGEN 294 (409)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECSEECSS
T ss_pred cCCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccCCCCCEEEEEeEEECC
Confidence 4688999999999999999888 33 2 26999999999999999999987 3 3325788887766553
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0087 Score=53.43 Aligned_cols=100 Identities=16% Similarity=0.160 Sum_probs=68.3
Q ss_pred HHHHcCCCCCCEEEEECCcc-cHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEccc--CCCC----
Q 048309 61 LIEKARVSKEHEVLEIGCGW-GTFAIEVVRQTGC-NYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDY--RQLP---- 132 (288)
Q Consensus 61 l~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~--~~~~---- 132 (288)
+.+..+++++.+||-+|+|. |..+..+++..++ +|+++|.+++..+.+++ .|.. .++..+- .++.
T Consensus 184 l~~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~----lGa~---~vi~~~~~~~~~~~~~~ 256 (374)
T 1cdo_A 184 AVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKV----FGAT---DFVNPNDHSEPISQVLS 256 (374)
T ss_dssp HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTCC---EEECGGGCSSCHHHHHH
T ss_pred HHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----hCCc---eEEeccccchhHHHHHH
Confidence 34556788999999999875 8889999887677 89999999988887754 3431 2222110 1111
Q ss_pred --CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccC-cEEEEEe
Q 048309 133 --KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKD-GLLVLQF 175 (288)
Q Consensus 133 --~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~ 175 (288)
..+.+|+|+-.-.- ...++.+.+.|+++ |++++..
T Consensus 257 ~~~~~g~D~vid~~g~--------~~~~~~~~~~l~~~~G~iv~~G 294 (374)
T 1cdo_A 257 KMTNGGVDFSLECVGN--------VGVMRNALESCLKGWGVSVLVG 294 (374)
T ss_dssp HHHTSCBSEEEECSCC--------HHHHHHHHHTBCTTTCEEEECS
T ss_pred HHhCCCCCEEEECCCC--------HHHHHHHHHHhhcCCcEEEEEc
Confidence 12479999864321 23566777999999 9988743
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0089 Score=53.42 Aligned_cols=100 Identities=17% Similarity=0.165 Sum_probs=68.3
Q ss_pred HHHHcCCCCCCEEEEECCcc-cHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEccc--CCCC----
Q 048309 61 LIEKARVSKEHEVLEIGCGW-GTFAIEVVRQTGC-NYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDY--RQLP---- 132 (288)
Q Consensus 61 l~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~--~~~~---- 132 (288)
+.+...++++.+||-+|+|. |..+..+++..++ +|+++|.+++..+.+++ .|.. .++..+- .++.
T Consensus 187 l~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~---~vi~~~~~~~~~~~~v~ 259 (376)
T 1e3i_A 187 AINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKA----LGAT---DCLNPRELDKPVQDVIT 259 (376)
T ss_dssp HHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTCS---EEECGGGCSSCHHHHHH
T ss_pred HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCCc---EEEccccccchHHHHHH
Confidence 34556788999999999885 8889999988677 89999999988877754 3431 2222110 1110
Q ss_pred --CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccC-cEEEEEe
Q 048309 133 --KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKD-GLLVLQF 175 (288)
Q Consensus 133 --~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~ 175 (288)
..+.+|+|+-.-.- ...++.+.+.|+++ |++++..
T Consensus 260 ~~~~~g~Dvvid~~G~--------~~~~~~~~~~l~~~~G~iv~~G 297 (376)
T 1e3i_A 260 ELTAGGVDYSLDCAGT--------AQTLKAAVDCTVLGWGSCTVVG 297 (376)
T ss_dssp HHHTSCBSEEEESSCC--------HHHHHHHHHTBCTTTCEEEECC
T ss_pred HHhCCCccEEEECCCC--------HHHHHHHHHHhhcCCCEEEEEC
Confidence 12479999864221 24566777999999 9988743
|
| >4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A* | Back alignment and structure |
|---|
Probab=96.44 E-value=0.02 Score=50.44 Aligned_cols=104 Identities=16% Similarity=0.183 Sum_probs=65.2
Q ss_pred HHHHHcCCCCCCEEEEECCcc-cHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCC----CCC
Q 048309 60 LLIEKARVSKEHEVLEIGCGW-GTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQ----LPK 133 (288)
Q Consensus 60 ~l~~~~~~~~~~~vLDiGcG~-G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~----~~~ 133 (288)
..++....+++.+||=+|+|. |..+..+++. .+.+|+++|.+++..+.+++. |...-+.....|..+ ...
T Consensus 154 ~~l~~~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~~----Ga~~~i~~~~~~~~~~v~~~t~ 229 (348)
T 4eez_A 154 KAIKVSGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKKI----GADVTINSGDVNPVDEIKKITG 229 (348)
T ss_dssp HHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHHT----TCSEEEEC-CCCHHHHHHHHTT
T ss_pred eeecccCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhhc----CCeEEEeCCCCCHHHHhhhhcC
Confidence 345566788999999999986 5666666665 678999999999877766543 432111111122111 112
Q ss_pred CCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 134 AKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 134 ~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
...+|.++.... -...+....+.|+++|++++..
T Consensus 230 g~g~d~~~~~~~--------~~~~~~~~~~~l~~~G~~v~~g 263 (348)
T 4eez_A 230 GLGVQSAIVCAV--------ARIAFEQAVASLKPMGKMVAVA 263 (348)
T ss_dssp SSCEEEEEECCS--------CHHHHHHHHHTEEEEEEEEECC
T ss_pred CCCceEEEEecc--------CcchhheeheeecCCceEEEEe
Confidence 335666665321 1345666778999999988743
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0066 Score=53.49 Aligned_cols=102 Identities=12% Similarity=0.029 Sum_probs=68.7
Q ss_pred HHHHHHHcCCCCCCEEEEECCc--ccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCC----
Q 048309 58 HSLLIEKARVSKEHEVLEIGCG--WGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQL---- 131 (288)
Q Consensus 58 ~~~l~~~~~~~~~~~vLDiGcG--~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~---- 131 (288)
+..+.+...++++.+||-+|+| .|..+..+++..+++|+++|.+++.++.+++. |.. .++...-.++
T Consensus 133 ~~~~~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~l----ga~---~~~~~~~~~~~~~~ 205 (340)
T 3gms_A 133 WVTCTETLNLQRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLRL----GAA---YVIDTSTAPLYETV 205 (340)
T ss_dssp HHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHH----TCS---EEEETTTSCHHHHH
T ss_pred HHHHHHhcccCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhC----CCc---EEEeCCcccHHHHH
Confidence 3445566788899999999986 58888888887788999999999888877653 321 2222211111
Q ss_pred ---CCCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 132 ---PKAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 132 ---~~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
.....+|+|+....-.. .....+.|+++|++++..
T Consensus 206 ~~~~~~~g~Dvvid~~g~~~---------~~~~~~~l~~~G~iv~~G 243 (340)
T 3gms_A 206 MELTNGIGADAAIDSIGGPD---------GNELAFSLRPNGHFLTIG 243 (340)
T ss_dssp HHHTTTSCEEEEEESSCHHH---------HHHHHHTEEEEEEEEECC
T ss_pred HHHhCCCCCcEEEECCCChh---------HHHHHHHhcCCCEEEEEe
Confidence 12347999987543221 122337899999998743
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0049 Score=55.27 Aligned_cols=99 Identities=19% Similarity=0.183 Sum_probs=67.6
Q ss_pred HHHcC-CCCCCEEEEECCcc-cHHHHHHHHccC-CEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcc---cCC----C
Q 048309 62 IEKAR-VSKEHEVLEIGCGW-GTFAIEVVRQTG-CNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCD---YRQ----L 131 (288)
Q Consensus 62 ~~~~~-~~~~~~vLDiGcG~-G~~~~~la~~~~-~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d---~~~----~ 131 (288)
+..++ ++++.+||-+|+|. |..+..+++..+ .+|++++.+++..+.+++ .|.. .++..+ -.+ +
T Consensus 187 l~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~----lGa~---~vi~~~~~~~~~~~~~v 259 (380)
T 1vj0_A 187 FDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEE----IGAD---LTLNRRETSVEERRKAI 259 (380)
T ss_dssp HHTCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHH----TTCS---EEEETTTSCHHHHHHHH
T ss_pred HHhcCCCCCCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHH----cCCc---EEEeccccCcchHHHHH
Confidence 35567 78999999999875 888999998877 599999999988877764 3431 233222 111 1
Q ss_pred ---CCCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 132 ---PKAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 132 ---~~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
.....+|+|+-.-.- ...++.+.+.|+++|+++...
T Consensus 260 ~~~~~g~g~Dvvid~~g~--------~~~~~~~~~~l~~~G~iv~~G 298 (380)
T 1vj0_A 260 MDITHGRGADFILEATGD--------SRALLEGSELLRRGGFYSVAG 298 (380)
T ss_dssp HHHTTTSCEEEEEECSSC--------TTHHHHHHHHEEEEEEEEECC
T ss_pred HHHhCCCCCcEEEECCCC--------HHHHHHHHHHHhcCCEEEEEe
Confidence 122369999865321 124556678999999988743
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=96.42 E-value=0.015 Score=50.98 Aligned_cols=104 Identities=20% Similarity=0.218 Sum_probs=70.6
Q ss_pred HHHHHHHHHcCCCCCCEEEEECC--cccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-
Q 048309 56 RKHSLLIEKARVSKEHEVLEIGC--GWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP- 132 (288)
Q Consensus 56 ~~~~~l~~~~~~~~~~~vLDiGc--G~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~- 132 (288)
..+..+.+...++++.+||-+|+ |.|..+..+++..+++|++++.+++..+.+.+ +.|.. .++...-.++.
T Consensus 136 tA~~al~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~---~~g~~---~~~~~~~~~~~~ 209 (336)
T 4b7c_A 136 TAYFALLDVGQPKNGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVE---ELGFD---GAIDYKNEDLAA 209 (336)
T ss_dssp HHHHHHHHTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH---TTCCS---EEEETTTSCHHH
T ss_pred HHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH---HcCCC---EEEECCCHHHHH
Confidence 33444447778889999999998 45888888888778899999999987776622 23431 22221111111
Q ss_pred -----CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 133 -----KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 133 -----~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
..+.+|+++.+..- ..+..+.+.|+++|++++.
T Consensus 210 ~~~~~~~~~~d~vi~~~g~---------~~~~~~~~~l~~~G~iv~~ 247 (336)
T 4b7c_A 210 GLKRECPKGIDVFFDNVGG---------EILDTVLTRIAFKARIVLC 247 (336)
T ss_dssp HHHHHCTTCEEEEEESSCH---------HHHHHHHTTEEEEEEEEEC
T ss_pred HHHHhcCCCceEEEECCCc---------chHHHHHHHHhhCCEEEEE
Confidence 23579999865321 3567778999999999874
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=96.38 E-value=0.012 Score=52.60 Aligned_cols=100 Identities=14% Similarity=0.119 Sum_probs=67.9
Q ss_pred HHHHcCCCCCCEEEEECCcc-cHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEccc--CCC----C
Q 048309 61 LIEKARVSKEHEVLEIGCGW-GTFAIEVVRQTGC-NYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDY--RQL----P 132 (288)
Q Consensus 61 l~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~--~~~----~ 132 (288)
+.+..+++++.+||-+|+|. |..+..+++..++ +|+++|.+++..+.+++ .|.. .++..+- .++ .
T Consensus 183 l~~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~----lGa~---~vi~~~~~~~~~~~~~~ 255 (374)
T 2jhf_A 183 AVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKE----VGAT---ECVNPQDYKKPIQEVLT 255 (374)
T ss_dssp HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTCS---EEECGGGCSSCHHHHHH
T ss_pred HHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCCc---eEecccccchhHHHHHH
Confidence 34556788999999999886 8888999887677 89999999988877754 3431 2222110 111 1
Q ss_pred --CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccC-cEEEEEe
Q 048309 133 --KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKD-GLLVLQF 175 (288)
Q Consensus 133 --~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~ 175 (288)
..+.+|+|+-.-.- ...++.+.+.|+++ |++++..
T Consensus 256 ~~~~~g~D~vid~~g~--------~~~~~~~~~~l~~~~G~iv~~G 293 (374)
T 2jhf_A 256 EMSNGGVDFSFEVIGR--------LDTMVTALSCCQEAYGVSVIVG 293 (374)
T ss_dssp HHTTSCBSEEEECSCC--------HHHHHHHHHHBCTTTCEEEECS
T ss_pred HHhCCCCcEEEECCCC--------HHHHHHHHHHhhcCCcEEEEec
Confidence 22479999864321 23466677899999 9988743
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0059 Score=53.87 Aligned_cols=93 Identities=20% Similarity=0.230 Sum_probs=65.1
Q ss_pred CCCCCCEEEEECCcc-cHHHHHHHHcc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEc----cc-CCCCCCCCC
Q 048309 66 RVSKEHEVLEIGCGW-GTFAIEVVRQT--GCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLC----DY-RQLPKAKKY 137 (288)
Q Consensus 66 ~~~~~~~vLDiGcG~-G~~~~~la~~~--~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~----d~-~~~~~~~~f 137 (288)
++ ++.+||-+|+|. |..+..+++.. +++|+++|.+++..+.+++. |.. .++.. |. ..+.....+
T Consensus 168 ~~-~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~l----Ga~---~vi~~~~~~~~~~~~~~g~g~ 239 (344)
T 2h6e_A 168 KF-AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALEL----GAD---YVSEMKDAESLINKLTDGLGA 239 (344)
T ss_dssp TC-SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHH----TCS---EEECHHHHHHHHHHHHTTCCE
T ss_pred CC-CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHh----CCC---EEeccccchHHHHHhhcCCCc
Confidence 67 899999999975 88889998886 89999999999988877653 321 22211 11 111123479
Q ss_pred CEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 138 DRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 138 D~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
|+|+-.-.- ...++.+.+.|+++|+++..
T Consensus 240 D~vid~~g~--------~~~~~~~~~~l~~~G~iv~~ 268 (344)
T 2h6e_A 240 SIAIDLVGT--------EETTYNLGKLLAQEGAIILV 268 (344)
T ss_dssp EEEEESSCC--------HHHHHHHHHHEEEEEEEEEC
T ss_pred cEEEECCCC--------hHHHHHHHHHhhcCCEEEEe
Confidence 999865321 23566677899999998874
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=96.34 E-value=0.022 Score=50.17 Aligned_cols=98 Identities=16% Similarity=0.242 Sum_probs=67.1
Q ss_pred HHHHHcCCC------CCCEEEEE-CCc-ccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCC
Q 048309 60 LLIEKARVS------KEHEVLEI-GCG-WGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQL 131 (288)
Q Consensus 60 ~l~~~~~~~------~~~~vLDi-GcG-~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~ 131 (288)
.+.+...++ ++.+||-+ |+| .|..+..+++..+++|++++.+++.++.+++. |.. .++..+ .++
T Consensus 135 ~l~~~~~~~~~~~~~~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~l----Ga~---~vi~~~-~~~ 206 (346)
T 3fbg_A 135 TLFDVFGISRNRNENEGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRNETIEWTKKM----GAD---IVLNHK-ESL 206 (346)
T ss_dssp HHHTTSCCCSSHHHHTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSHHHHHHHHHH----TCS---EEECTT-SCH
T ss_pred HHHHhcCCccccccCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhc----CCc---EEEECC-ccH
Confidence 344556666 89999999 565 48899999888788999999999988887763 321 222211 111
Q ss_pred C------CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEE
Q 048309 132 P------KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVL 173 (288)
Q Consensus 132 ~------~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~ 173 (288)
. ....+|+|+-... -...++.+.+.|+++|+++.
T Consensus 207 ~~~~~~~~~~g~Dvv~d~~g--------~~~~~~~~~~~l~~~G~iv~ 246 (346)
T 3fbg_A 207 LNQFKTQGIELVDYVFCTFN--------TDMYYDDMIQLVKPRGHIAT 246 (346)
T ss_dssp HHHHHHHTCCCEEEEEESSC--------HHHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHhCCCCccEEEECCC--------chHHHHHHHHHhccCCEEEE
Confidence 1 2357999986422 13456677789999999975
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=96.33 E-value=0.019 Score=51.15 Aligned_cols=97 Identities=18% Similarity=0.246 Sum_probs=67.0
Q ss_pred HHHcCCC-----CCCEEEEEC-Ccc-cHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcc--c---
Q 048309 62 IEKARVS-----KEHEVLEIG-CGW-GTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCD--Y--- 128 (288)
Q Consensus 62 ~~~~~~~-----~~~~vLDiG-cG~-G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d--~--- 128 (288)
.+...++ ++.+||-+| +|. |..+..+++. .+++|+++|.+++..+.+++ .|.. .++... .
T Consensus 159 ~~~~~~~~~~~~~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~----lGad---~vi~~~~~~~~~ 231 (363)
T 4dvj_A 159 FDRLDVNKPVPGAAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKS----LGAH---HVIDHSKPLAAE 231 (363)
T ss_dssp HTTSCTTSCCTTSEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHH----TTCS---EEECTTSCHHHH
T ss_pred HHhhCcCcCcCCCCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHH----cCCC---EEEeCCCCHHHH
Confidence 3455666 788999998 664 9999999987 68899999999988887764 3431 222211 1
Q ss_pred -CCCCCCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 129 -RQLPKAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 129 -~~~~~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
.+. ..+.+|+|+-... -...++.+.+.|+++|++++.
T Consensus 232 v~~~-~~~g~Dvvid~~g--------~~~~~~~~~~~l~~~G~iv~~ 269 (363)
T 4dvj_A 232 VAAL-GLGAPAFVFSTTH--------TDKHAAEIADLIAPQGRFCLI 269 (363)
T ss_dssp HHTT-CSCCEEEEEECSC--------HHHHHHHHHHHSCTTCEEEEC
T ss_pred HHHh-cCCCceEEEECCC--------chhhHHHHHHHhcCCCEEEEE
Confidence 111 2357998886422 134567777999999999874
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0082 Score=53.17 Aligned_cols=72 Identities=14% Similarity=0.131 Sum_probs=55.3
Q ss_pred CEEEEECCcccHHHHHHHHccC---CEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCC----CCCCCEEEEc
Q 048309 71 HEVLEIGCGWGTFAIEVVRQTG---CNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPK----AKKYDRIISC 143 (288)
Q Consensus 71 ~~vLDiGcG~G~~~~~la~~~~---~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~----~~~fD~I~~~ 143 (288)
.+|+|+.||.|.++..+.+. | ..|.++|+++.+++..+.++. +..++.+|+.++.. ...+|+|+..
T Consensus 3 ~~v~dLFaG~Gg~~~g~~~~-G~~~~~v~~~E~d~~a~~~~~~N~~------~~~~~~~Di~~~~~~~~~~~~~D~l~~g 75 (343)
T 1g55_A 3 LRVLELYSGVGGMHHALRES-CIPAQVVAAIDVNTVANEVYKYNFP------HTQLLAKTIEGITLEEFDRLSFDMILMS 75 (343)
T ss_dssp EEEEEETCTTCHHHHHHHHH-TCSEEEEEEECCCHHHHHHHHHHCT------TSCEECSCGGGCCHHHHHHHCCSEEEEC
T ss_pred CeEEEeCcCccHHHHHHHHC-CCCceEEEEEeCCHHHHHHHHHhcc------ccccccCCHHHccHhHcCcCCcCEEEEc
Confidence 58999999999999998875 4 369999999999998888763 34578899988751 1279999998
Q ss_pred cchhhh
Q 048309 144 EMMEAV 149 (288)
Q Consensus 144 ~~l~~~ 149 (288)
..+..+
T Consensus 76 pPCq~f 81 (343)
T 1g55_A 76 PPCQPF 81 (343)
T ss_dssp CC----
T ss_pred CCCcch
Confidence 876555
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=96.29 E-value=0.026 Score=49.31 Aligned_cols=99 Identities=18% Similarity=0.132 Sum_probs=68.0
Q ss_pred HHHHcCCCCCCEEEEEC-Cc-ccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCC-------
Q 048309 61 LIEKARVSKEHEVLEIG-CG-WGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQL------- 131 (288)
Q Consensus 61 l~~~~~~~~~~~vLDiG-cG-~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~------- 131 (288)
+.+...++++.+||-+| +| .|..+..+++..+++|++++.+++.++.+++. |. -.++..+-.++
T Consensus 132 l~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~----Ga---~~~~~~~~~~~~~~~~~~ 204 (325)
T 3jyn_A 132 LRQTYQVKPGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHAKAL----GA---WETIDYSHEDVAKRVLEL 204 (325)
T ss_dssp HHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHH----TC---SEEEETTTSCHHHHHHHH
T ss_pred HHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc----CC---CEEEeCCCccHHHHHHHH
Confidence 33445788999999999 44 58899998887788999999999988877653 32 12232221211
Q ss_pred CCCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 132 PKAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 132 ~~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
.....+|+|+....- ..+..+.+.|+++|++++..
T Consensus 205 ~~~~g~Dvvid~~g~---------~~~~~~~~~l~~~G~iv~~g 239 (325)
T 3jyn_A 205 TDGKKCPVVYDGVGQ---------DTWLTSLDSVAPRGLVVSFG 239 (325)
T ss_dssp TTTCCEEEEEESSCG---------GGHHHHHTTEEEEEEEEECC
T ss_pred hCCCCceEEEECCCh---------HHHHHHHHHhcCCCEEEEEe
Confidence 123479999875332 23456678999999998854
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0028 Score=56.36 Aligned_cols=101 Identities=15% Similarity=0.142 Sum_probs=67.1
Q ss_pred HHHHcCCCCCCEEEEECCcc-cHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccC-CCC--CCCC
Q 048309 61 LIEKARVSKEHEVLEIGCGW-GTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYR-QLP--KAKK 136 (288)
Q Consensus 61 l~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~-~~~--~~~~ 136 (288)
.+...+++++.+||-+|+|. |..+..+++..+++|+++|.+++..+.+++. |.. .++..+-. ++. ..+.
T Consensus 171 ~l~~~~~~~g~~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~~l----Ga~---~v~~~~~~~~~~~~~~~~ 243 (360)
T 1piw_A 171 PLVRNGCGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKM----GAD---HYIATLEEGDWGEKYFDT 243 (360)
T ss_dssp HHHHTTCSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHH----TCS---EEEEGGGTSCHHHHSCSC
T ss_pred HHHHcCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHc----CCC---EEEcCcCchHHHHHhhcC
Confidence 34446788999999999875 8888899887788999999998888777653 431 23322111 111 1157
Q ss_pred CCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 137 YDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 137 fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
+|+|+-...-. + ...++.+.+.|++||+++..
T Consensus 244 ~D~vid~~g~~--~----~~~~~~~~~~l~~~G~iv~~ 275 (360)
T 1piw_A 244 FDLIVVCASSL--T----DIDFNIMPKAMKVGGRIVSI 275 (360)
T ss_dssp EEEEEECCSCS--T----TCCTTTGGGGEEEEEEEEEC
T ss_pred CCEEEECCCCC--c----HHHHHHHHHHhcCCCEEEEe
Confidence 99998653320 0 11234556899999998874
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=96.26 E-value=0.022 Score=49.89 Aligned_cols=98 Identities=20% Similarity=0.302 Sum_probs=67.1
Q ss_pred HHHHHHcCCCCCCEEEEECC--cccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCC---CC-
Q 048309 59 SLLIEKARVSKEHEVLEIGC--GWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQ---LP- 132 (288)
Q Consensus 59 ~~l~~~~~~~~~~~vLDiGc--G~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~---~~- 132 (288)
..+.+..+++++.+||-.|| |.|..+..+++..+++|+++|.+++.++.+++ .|.. .+ .|..+ +.
T Consensus 135 ~al~~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~----~g~~---~~--~d~~~~~~~~~ 205 (333)
T 1v3u_A 135 FGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQ----IGFD---AA--FNYKTVNSLEE 205 (333)
T ss_dssp HHHHTTSCCCSSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----TTCS---EE--EETTSCSCHHH
T ss_pred HHHHHhhCCCCCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh----cCCc---EE--EecCCHHHHHH
Confidence 33445567889999999997 56888888877778899999999988776633 2321 11 23322 10
Q ss_pred -----CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 133 -----KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 133 -----~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
..+.+|+++.+..- ..++.+.+.|++||++++.
T Consensus 206 ~~~~~~~~~~d~vi~~~g~---------~~~~~~~~~l~~~G~~v~~ 243 (333)
T 1v3u_A 206 ALKKASPDGYDCYFDNVGG---------EFLNTVLSQMKDFGKIAIC 243 (333)
T ss_dssp HHHHHCTTCEEEEEESSCH---------HHHHHHHTTEEEEEEEEEC
T ss_pred HHHHHhCCCCeEEEECCCh---------HHHHHHHHHHhcCCEEEEE
Confidence 12579999875431 2367777999999999874
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=96.22 E-value=0.015 Score=51.28 Aligned_cols=98 Identities=22% Similarity=0.382 Sum_probs=67.4
Q ss_pred HHHcCCCCCCEEEEECCc--ccHHHHHHHHcc-CCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCC----C--
Q 048309 62 IEKARVSKEHEVLEIGCG--WGTFAIEVVRQT-GCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQL----P-- 132 (288)
Q Consensus 62 ~~~~~~~~~~~vLDiGcG--~G~~~~~la~~~-~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~----~-- 132 (288)
+....++++.+||-+|+| .|..+..+++.. +++|+++|.+++..+.+++. |.. .++...-.+. .
T Consensus 163 l~~~~~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~~~----g~~---~~~~~~~~~~~~~~~~~ 235 (347)
T 1jvb_A 163 VRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRA----GAD---YVINASMQDPLAEIRRI 235 (347)
T ss_dssp HHHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHH----TCS---EEEETTTSCHHHHHHHH
T ss_pred HHhcCCCCCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh----CCC---EEecCCCccHHHHHHHH
Confidence 445678899999999987 577888888776 89999999999888777543 321 2222111111 1
Q ss_pred CC-CCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 133 KA-KKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 133 ~~-~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
.. +.+|+++....- ...++.+.+.|+++|++++.
T Consensus 236 ~~~~~~d~vi~~~g~--------~~~~~~~~~~l~~~G~iv~~ 270 (347)
T 1jvb_A 236 TESKGVDAVIDLNNS--------EKTLSVYPKALAKQGKYVMV 270 (347)
T ss_dssp TTTSCEEEEEESCCC--------HHHHTTGGGGEEEEEEEEEC
T ss_pred hcCCCceEEEECCCC--------HHHHHHHHHHHhcCCEEEEE
Confidence 12 479999865321 23566778999999998874
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=96.14 E-value=0.012 Score=52.00 Aligned_cols=97 Identities=14% Similarity=0.073 Sum_probs=66.2
Q ss_pred HHcCCCCCCEEEEECCcc-cHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCC-------CC
Q 048309 63 EKARVSKEHEVLEIGCGW-GTFAIEVVRQTGC-NYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQL-------PK 133 (288)
Q Consensus 63 ~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~-------~~ 133 (288)
...++ ++.+||-+|+|. |..+..+++..++ +|+++|.+++..+.+++. |.. .++..+-.++ ..
T Consensus 162 ~~~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~----Ga~---~~~~~~~~~~~~~v~~~~~ 233 (348)
T 2d8a_A 162 LAGPI-SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKV----GAD---YVINPFEEDVVKEVMDITD 233 (348)
T ss_dssp TTSCC-TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHH----TCS---EEECTTTSCHHHHHHHHTT
T ss_pred HhcCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----CCC---EEECCCCcCHHHHHHHHcC
Confidence 55667 899999999875 8888888887677 899999999888777643 321 2222211111 11
Q ss_pred CCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 134 AKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 134 ~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
...+|+|+..-.. ...++.+.+.|+++|+++...
T Consensus 234 g~g~D~vid~~g~--------~~~~~~~~~~l~~~G~iv~~g 267 (348)
T 2d8a_A 234 GNGVDVFLEFSGA--------PKALEQGLQAVTPAGRVSLLG 267 (348)
T ss_dssp TSCEEEEEECSCC--------HHHHHHHHHHEEEEEEEEECC
T ss_pred CCCCCEEEECCCC--------HHHHHHHHHHHhcCCEEEEEc
Confidence 2469999865321 234566778999999988743
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=96.14 E-value=0.012 Score=51.83 Aligned_cols=97 Identities=15% Similarity=0.199 Sum_probs=67.1
Q ss_pred HHHHcCCCCCCEEEEECCcc-cHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-------
Q 048309 61 LIEKARVSKEHEVLEIGCGW-GTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP------- 132 (288)
Q Consensus 61 l~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~------- 132 (288)
.+...+++++.+||-+|+|. |..+..+++..+++|+++|.+++..+.+++ .|.. .++ |..+..
T Consensus 156 ~l~~~~~~~g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~----lGa~---~~~--d~~~~~~~~~~~~ 226 (339)
T 1rjw_A 156 ALKVTGAKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKE----LGAD---LVV--NPLKEDAAKFMKE 226 (339)
T ss_dssp HHHHHTCCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHH----TTCS---EEE--CTTTSCHHHHHHH
T ss_pred HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----CCCC---EEe--cCCCccHHHHHHH
Confidence 34445788999999999874 888888888778899999999988887754 3431 222 332211
Q ss_pred CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 133 KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 133 ~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
..+.+|+|+..... ...++.+.+.|+++|+++..
T Consensus 227 ~~~~~d~vid~~g~--------~~~~~~~~~~l~~~G~~v~~ 260 (339)
T 1rjw_A 227 KVGGVHAAVVTAVS--------KPAFQSAYNSIRRGGACVLV 260 (339)
T ss_dssp HHSSEEEEEESSCC--------HHHHHHHHHHEEEEEEEEEC
T ss_pred HhCCCCEEEECCCC--------HHHHHHHHHHhhcCCEEEEe
Confidence 01468998865321 23466677899999998874
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.10 E-value=0.033 Score=48.45 Aligned_cols=97 Identities=19% Similarity=0.177 Sum_probs=64.6
Q ss_pred HHHHcCCCCCCEEEEEC-Cc-ccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCC-CC-CCCC
Q 048309 61 LIEKARVSKEHEVLEIG-CG-WGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQ-LP-KAKK 136 (288)
Q Consensus 61 l~~~~~~~~~~~vLDiG-cG-~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~-~~-~~~~ 136 (288)
.++...++++.+||-+| +| .|..+..+++..+++|++++ +++..+.+++ .|.+ .++..+-.+ +. .-..
T Consensus 144 al~~~~~~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~-~~~~~~~~~~----lGa~---~~i~~~~~~~~~~~~~g 215 (321)
T 3tqh_A 144 ALNQAEVKQGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTA-SKRNHAFLKA----LGAE---QCINYHEEDFLLAISTP 215 (321)
T ss_dssp HHHHTTCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEE-CHHHHHHHHH----HTCS---EEEETTTSCHHHHCCSC
T ss_pred HHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEe-ccchHHHHHH----cCCC---EEEeCCCcchhhhhccC
Confidence 33777889999999996 66 49999999988788999997 5554555543 3542 233222222 22 2257
Q ss_pred CCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 137 YDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 137 fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
+|+|+-.-. . .. +..+.+.|+++|+++..
T Consensus 216 ~D~v~d~~g-----~---~~-~~~~~~~l~~~G~iv~~ 244 (321)
T 3tqh_A 216 VDAVIDLVG-----G---DV-GIQSIDCLKETGCIVSV 244 (321)
T ss_dssp EEEEEESSC-----H---HH-HHHHGGGEEEEEEEEEC
T ss_pred CCEEEECCC-----c---HH-HHHHHHhccCCCEEEEe
Confidence 899886422 1 12 26778999999999873
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=96.09 E-value=0.014 Score=51.42 Aligned_cols=94 Identities=13% Similarity=0.199 Sum_probs=66.6
Q ss_pred CCCCCCEEEEECCcc-cHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-------CCCC
Q 048309 66 RVSKEHEVLEIGCGW-GTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-------KAKK 136 (288)
Q Consensus 66 ~~~~~~~vLDiGcG~-G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-------~~~~ 136 (288)
.++++.+||-+|+|. |..+.++++. .+.+|+++|.+++..+.+++ .|.. .++..+- +.. ....
T Consensus 168 ~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~----lGa~---~~i~~~~-~~~~~v~~~t~g~g 239 (345)
T 3jv7_A 168 LLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALARE----VGAD---AAVKSGA-GAADAIRELTGGQG 239 (345)
T ss_dssp GCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHH----TTCS---EEEECST-THHHHHHHHHGGGC
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCCC---EEEcCCC-cHHHHHHHHhCCCC
Confidence 577899999999986 8899999987 47899999999998887765 3432 2222211 111 2247
Q ss_pred CCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 137 YDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 137 fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
+|+|+-.-.- ...++.+.+.|+++|++++..
T Consensus 240 ~d~v~d~~G~--------~~~~~~~~~~l~~~G~iv~~G 270 (345)
T 3jv7_A 240 ATAVFDFVGA--------QSTIDTAQQVVAVDGHISVVG 270 (345)
T ss_dssp EEEEEESSCC--------HHHHHHHHHHEEEEEEEEECS
T ss_pred CeEEEECCCC--------HHHHHHHHHHHhcCCEEEEEC
Confidence 9998864221 235677789999999998753
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.04 E-value=0.036 Score=48.67 Aligned_cols=103 Identities=17% Similarity=0.196 Sum_probs=68.9
Q ss_pred HHHHHHcCCCCCCEEEEECCcc-cHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCC-----
Q 048309 59 SLLIEKARVSKEHEVLEIGCGW-GTFAIEVVRQTGC-NYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQL----- 131 (288)
Q Consensus 59 ~~l~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~----- 131 (288)
..........++.+||-.|+|. |..+..+++..++ .++++|.+++..+.+++. |. ..++..+-.+.
T Consensus 150 ~~~~~~~~~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~l----Ga---~~~i~~~~~~~~~~~~ 222 (346)
T 4a2c_A 150 LHAFHLAQGCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSF----GA---MQTFNSSEMSAPQMQS 222 (346)
T ss_dssp HHHHHHTTCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----TC---SEEEETTTSCHHHHHH
T ss_pred HHHHHHhccCCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHHc----CC---eEEEeCCCCCHHHHHH
Confidence 4456677888999999999886 7778888887554 578999999988777653 43 23332222111
Q ss_pred --CCCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEee
Q 048309 132 --PKAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 132 --~~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
.....+|+|+.... -...++.+.+.|++||.+++...
T Consensus 223 ~~~~~~g~d~v~d~~G--------~~~~~~~~~~~l~~~G~~v~~g~ 261 (346)
T 4a2c_A 223 VLRELRFNQLILETAG--------VPQTVELAVEIAGPHAQLALVGT 261 (346)
T ss_dssp HHGGGCSSEEEEECSC--------SHHHHHHHHHHCCTTCEEEECCC
T ss_pred hhcccCCccccccccc--------ccchhhhhhheecCCeEEEEEec
Confidence 12356788775422 13456667789999999987543
|
| >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... | Back alignment and structure |
|---|
Probab=96.04 E-value=0.02 Score=50.38 Aligned_cols=72 Identities=14% Similarity=0.055 Sum_probs=55.3
Q ss_pred CCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC--CCCCCCEEEEccchh
Q 048309 70 EHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP--KAKKYDRIISCEMME 147 (288)
Q Consensus 70 ~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~--~~~~fD~I~~~~~l~ 147 (288)
+.+++|+.||.|.++..+.+.....+.++|+++.+++..+.++... . .+|+.++. .-..+|+|+....+.
T Consensus 11 ~~~~~dLFaG~Gg~~~g~~~aG~~~v~~~e~d~~a~~t~~~N~~~~-----~---~~Di~~~~~~~~~~~D~l~~gpPCQ 82 (327)
T 2c7p_A 11 GLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGEK-----P---EGDITQVNEKTIPDHDILCAGFPCQ 82 (327)
T ss_dssp TCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSCC-----C---BSCGGGSCGGGSCCCSEEEEECCCT
T ss_pred CCcEEEECCCcCHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCC-----C---cCCHHHcCHhhCCCCCEEEECCCCC
Confidence 4689999999999999988763335788999999998888886421 1 68888765 224699999987665
Q ss_pred hh
Q 048309 148 AV 149 (288)
Q Consensus 148 ~~ 149 (288)
.+
T Consensus 83 ~f 84 (327)
T 2c7p_A 83 AF 84 (327)
T ss_dssp TT
T ss_pred Cc
Confidence 55
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=96.03 E-value=0.028 Score=49.74 Aligned_cols=99 Identities=25% Similarity=0.250 Sum_probs=67.7
Q ss_pred HHHHcCCCCCCEEEEEC-Cc-ccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC------
Q 048309 61 LIEKARVSKEHEVLEIG-CG-WGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP------ 132 (288)
Q Consensus 61 l~~~~~~~~~~~vLDiG-cG-~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~------ 132 (288)
+.+...++++.+||-+| +| .|..+..+++..+++|+++|.+++..+.+++. |.. .++..+-.++.
T Consensus 159 l~~~~~~~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~l----Ga~---~~~~~~~~~~~~~~~~~ 231 (353)
T 4dup_A 159 LFQMAGLTEGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEACERL----GAK---RGINYRSEDFAAVIKAE 231 (353)
T ss_dssp HTTTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH----TCS---EEEETTTSCHHHHHHHH
T ss_pred HHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhc----CCC---EEEeCCchHHHHHHHHH
Confidence 33556788999999994 34 58888988888788999999999988877653 321 22222211111
Q ss_pred CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 133 KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 133 ~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
..+.+|+++....-. .+..+.+.|+++|++++..
T Consensus 232 ~~~g~Dvvid~~g~~---------~~~~~~~~l~~~G~iv~~g 265 (353)
T 4dup_A 232 TGQGVDIILDMIGAA---------YFERNIASLAKDGCLSIIA 265 (353)
T ss_dssp HSSCEEEEEESCCGG---------GHHHHHHTEEEEEEEEECC
T ss_pred hCCCceEEEECCCHH---------HHHHHHHHhccCCEEEEEE
Confidence 135799998754321 3556678999999988743
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=95.98 E-value=0.024 Score=49.71 Aligned_cols=97 Identities=20% Similarity=0.205 Sum_probs=66.4
Q ss_pred HHcCCCCCCEEEEEC-C-cccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-------C
Q 048309 63 EKARVSKEHEVLEIG-C-GWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-------K 133 (288)
Q Consensus 63 ~~~~~~~~~~vLDiG-c-G~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-------~ 133 (288)
+...++++.+||-+| + |.|..+..+++..+++|++++.+++.++.+++ .|. -.++..+-.++. .
T Consensus 142 ~~~~~~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~----~ga---~~~~~~~~~~~~~~~~~~~~ 214 (334)
T 3qwb_A 142 EAYHVKKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIAKE----YGA---EYLINASKEDILRQVLKFTN 214 (334)
T ss_dssp TTSCCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----TTC---SEEEETTTSCHHHHHHHHTT
T ss_pred HhccCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----cCC---cEEEeCCCchHHHHHHHHhC
Confidence 334678999999999 3 45888888888778899999999988877654 342 123322222211 2
Q ss_pred CCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 134 AKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 134 ~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
...+|+|+....- ..++.+.+.|+++|++++..
T Consensus 215 ~~g~D~vid~~g~---------~~~~~~~~~l~~~G~iv~~G 247 (334)
T 3qwb_A 215 GKGVDASFDSVGK---------DTFEISLAALKRKGVFVSFG 247 (334)
T ss_dssp TSCEEEEEECCGG---------GGHHHHHHHEEEEEEEEECC
T ss_pred CCCceEEEECCCh---------HHHHHHHHHhccCCEEEEEc
Confidence 3579999875331 24556678999999998743
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.98 E-value=0.014 Score=51.45 Aligned_cols=98 Identities=17% Similarity=0.238 Sum_probs=67.1
Q ss_pred HHHHcCCCCCCEEEEECC--cccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccC---CCC---
Q 048309 61 LIEKARVSKEHEVLEIGC--GWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYR---QLP--- 132 (288)
Q Consensus 61 l~~~~~~~~~~~vLDiGc--G~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~---~~~--- 132 (288)
.+...+++++.+||-+|+ |.|..+..+++..+++|+++|.+++..+.+++ .|.. .++ |.. ++.
T Consensus 161 ~l~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~~----~g~~---~~~--d~~~~~~~~~~~ 231 (347)
T 2hcy_A 161 ALKSANLMAGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFRS----IGGE---VFI--DFTKEKDIVGAV 231 (347)
T ss_dssp HHHTTTCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHHHH----TTCC---EEE--ETTTCSCHHHHH
T ss_pred HHHhcCCCCCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHH----cCCc---eEE--ecCccHhHHHHH
Confidence 345557789999999998 46888888887767899999998887766554 3431 222 332 111
Q ss_pred ---CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 133 ---KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 133 ---~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
..+.+|+++..... ...++.+.+.|+++|++++..
T Consensus 232 ~~~~~~~~D~vi~~~g~--------~~~~~~~~~~l~~~G~iv~~g 269 (347)
T 2hcy_A 232 LKATDGGAHGVINVSVS--------EAAIEASTRYVRANGTTVLVG 269 (347)
T ss_dssp HHHHTSCEEEEEECSSC--------HHHHHHHTTSEEEEEEEEECC
T ss_pred HHHhCCCCCEEEECCCc--------HHHHHHHHHHHhcCCEEEEEe
Confidence 11279999875331 245677889999999988743
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=95.95 E-value=0.032 Score=49.52 Aligned_cols=100 Identities=21% Similarity=0.247 Sum_probs=68.2
Q ss_pred HHHHHcCCCCCCEEEEEC--CcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-----
Q 048309 60 LLIEKARVSKEHEVLEIG--CGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP----- 132 (288)
Q Consensus 60 ~l~~~~~~~~~~~vLDiG--cG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~----- 132 (288)
.+.+...++++.+||-+| +|.|..+..+++..+++|++++.+++..+.+++ .|.. .++..+-.++.
T Consensus 154 al~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~----~Ga~---~~~~~~~~~~~~~~~~ 226 (362)
T 2c0c_A 154 SLKELGGLSEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKS----LGCD---RPINYKTEPVGTVLKQ 226 (362)
T ss_dssp HHHHHTCCCTTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----TTCS---EEEETTTSCHHHHHHH
T ss_pred HHHHhcCCCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHH----cCCc---EEEecCChhHHHHHHH
Confidence 334455788999999999 346999999988778899999999888777764 3431 22222211111
Q ss_pred -CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 133 -KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 133 -~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
....+|+|+....- ..++.+.+.|+++|++++..
T Consensus 227 ~~~~g~D~vid~~g~---------~~~~~~~~~l~~~G~iv~~g 261 (362)
T 2c0c_A 227 EYPEGVDVVYESVGG---------AMFDLAVDALATKGRLIVIG 261 (362)
T ss_dssp HCTTCEEEEEECSCT---------HHHHHHHHHEEEEEEEEECC
T ss_pred hcCCCCCEEEECCCH---------HHHHHHHHHHhcCCEEEEEe
Confidence 22469999865331 35667778999999988743
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.91 E-value=0.045 Score=48.37 Aligned_cols=97 Identities=23% Similarity=0.184 Sum_probs=65.3
Q ss_pred HHcCCCCCCEEEEECC--cccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCC----C---C
Q 048309 63 EKARVSKEHEVLEIGC--GWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQL----P---K 133 (288)
Q Consensus 63 ~~~~~~~~~~vLDiGc--G~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~----~---~ 133 (288)
+..+++++.+||-.|+ |.|..+..+++..+++|++++.+++..+.+++ .|.. .++..+-.+. . .
T Consensus 164 ~~~~~~~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~----~ga~---~~~d~~~~~~~~~~~~~~~ 236 (351)
T 1yb5_A 164 HSACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQ----NGAH---EVFNHREVNYIDKIKKYVG 236 (351)
T ss_dssp TTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----TTCS---EEEETTSTTHHHHHHHHHC
T ss_pred HhhCCCCcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChhHHHHHHH----cCCC---EEEeCCCchHHHHHHHHcC
Confidence 4567889999999996 45888888887778899999999988776543 3431 2222111111 0 2
Q ss_pred CCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 134 AKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 134 ~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
...+|+++.+..- ..+..+.+.|+++|++++..
T Consensus 237 ~~~~D~vi~~~G~---------~~~~~~~~~l~~~G~iv~~g 269 (351)
T 1yb5_A 237 EKGIDIIIEMLAN---------VNLSKDLSLLSHGGRVIVVG 269 (351)
T ss_dssp TTCEEEEEESCHH---------HHHHHHHHHEEEEEEEEECC
T ss_pred CCCcEEEEECCCh---------HHHHHHHHhccCCCEEEEEe
Confidence 2479999875321 23566778999999988743
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=95.84 E-value=0.032 Score=48.99 Aligned_cols=99 Identities=14% Similarity=0.192 Sum_probs=67.9
Q ss_pred HHHHHHcCCCCCCEEEEECC--cccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccC---CCC-
Q 048309 59 SLLIEKARVSKEHEVLEIGC--GWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYR---QLP- 132 (288)
Q Consensus 59 ~~l~~~~~~~~~~~vLDiGc--G~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~---~~~- 132 (288)
..+.+..+++++.+||-+|+ |.|..+..+++..+++|++++.+++..+.+++. .|.. .++ |.. ++.
T Consensus 145 ~al~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~---~g~~---~~~--d~~~~~~~~~ 216 (345)
T 2j3h_A 145 AGFYEVCSPKEGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKTK---FGFD---DAF--NYKEESDLTA 216 (345)
T ss_dssp HHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT---SCCS---EEE--ETTSCSCSHH
T ss_pred HHHHHHhCCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH---cCCc---eEE--ecCCHHHHHH
Confidence 33335567889999999997 468888888887788999999999877766532 2431 222 222 111
Q ss_pred -----CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 133 -----KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 133 -----~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
..+.+|+++....- ..++.+.+.|++||++++.
T Consensus 217 ~~~~~~~~~~d~vi~~~g~---------~~~~~~~~~l~~~G~~v~~ 254 (345)
T 2j3h_A 217 ALKRCFPNGIDIYFENVGG---------KMLDAVLVNMNMHGRIAVC 254 (345)
T ss_dssp HHHHHCTTCEEEEEESSCH---------HHHHHHHTTEEEEEEEEEC
T ss_pred HHHHHhCCCCcEEEECCCH---------HHHHHHHHHHhcCCEEEEE
Confidence 12469999875321 2567778999999999874
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.83 E-value=0.034 Score=48.50 Aligned_cols=94 Identities=18% Similarity=0.202 Sum_probs=64.9
Q ss_pred HcCCCCCCEEEEEC--CcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC---------
Q 048309 64 KARVSKEHEVLEIG--CGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP--------- 132 (288)
Q Consensus 64 ~~~~~~~~~vLDiG--cG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~--------- 132 (288)
..+++++.+||-.| +|.|..+..+++..+++|+++|.+++..+.+++. |.. .++ |..+..
T Consensus 135 ~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~----g~~---~~~--~~~~~~~~~~~~~~~ 205 (327)
T 1qor_A 135 TYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKA----GAW---QVI--NYREEDLVERLKEIT 205 (327)
T ss_dssp TSCCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHH----TCS---EEE--ETTTSCHHHHHHHHT
T ss_pred hhCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHc----CCC---EEE--ECCCccHHHHHHHHh
Confidence 55778899999999 4568888888877678999999999888777652 321 222 222111
Q ss_pred CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 133 KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 133 ~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
....+|+++.+.. ...++.+.+.|+++|++++..
T Consensus 206 ~~~~~D~vi~~~g---------~~~~~~~~~~l~~~G~iv~~g 239 (327)
T 1qor_A 206 GGKKVRVVYDSVG---------RDTWERSLDCLQRRGLMVSFG 239 (327)
T ss_dssp TTCCEEEEEECSC---------GGGHHHHHHTEEEEEEEEECC
T ss_pred CCCCceEEEECCc---------hHHHHHHHHHhcCCCEEEEEe
Confidence 1346999987643 123566678999999988743
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=95.82 E-value=0.02 Score=50.42 Aligned_cols=98 Identities=16% Similarity=0.208 Sum_probs=68.1
Q ss_pred HHHHcCCCCCCEEEEECC--cccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC------
Q 048309 61 LIEKARVSKEHEVLEIGC--GWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP------ 132 (288)
Q Consensus 61 l~~~~~~~~~~~vLDiGc--G~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~------ 132 (288)
+.+...++++.+||-+|+ |.|..+..+++..+++|++++.+++..+.+++. |. -.++..+ .++.
T Consensus 151 l~~~~~~~~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~----ga---~~v~~~~-~~~~~~v~~~ 222 (342)
T 4eye_A 151 YARRGQLRAGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVKSV----GA---DIVLPLE-EGWAKAVREA 222 (342)
T ss_dssp HHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHH----TC---SEEEESS-TTHHHHHHHH
T ss_pred HHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhc----CC---cEEecCc-hhHHHHHHHH
Confidence 335567889999999997 458999999888788999999999888777653 33 1233333 2221
Q ss_pred -CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 133 -KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 133 -~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
....+|+|+....- ..+..+.+.|+++|++++..
T Consensus 223 ~~~~g~Dvvid~~g~---------~~~~~~~~~l~~~G~iv~~G 257 (342)
T 4eye_A 223 TGGAGVDMVVDPIGG---------PAFDDAVRTLASEGRLLVVG 257 (342)
T ss_dssp TTTSCEEEEEESCC-----------CHHHHHHTEEEEEEEEEC-
T ss_pred hCCCCceEEEECCch---------hHHHHHHHhhcCCCEEEEEE
Confidence 23479999875332 13566778999999998743
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=95.73 E-value=0.015 Score=51.01 Aligned_cols=59 Identities=12% Similarity=0.180 Sum_probs=47.8
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCC
Q 048309 57 KHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGL 117 (288)
Q Consensus 57 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~ 117 (288)
.+..+++.. ..++..|||.-||+|+.+....+ .+.+.+|+|+++..++.++++++..+.
T Consensus 241 l~~~~i~~~-~~~~~~VlDpF~GsGtt~~aa~~-~gr~~ig~e~~~~~~~~~~~r~~~~~~ 299 (323)
T 1boo_A 241 LPEFFIRML-TEPDDLVVDIFGGSNTTGLVAER-ESRKWISFEMKPEYVAASAFRFLDNNI 299 (323)
T ss_dssp HHHHHHHHH-CCTTCEEEETTCTTCHHHHHHHH-TTCEEEEEESCHHHHHHHHGGGSCSCS
T ss_pred HHHHHHHHh-CCCCCEEEECCCCCCHHHHHHHH-cCCCEEEEeCCHHHHHHHHHHHHhccc
Confidence 445555544 35788999999999999888776 488999999999999999998876553
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=95.66 E-value=0.061 Score=40.73 Aligned_cols=90 Identities=13% Similarity=0.049 Sum_probs=57.7
Q ss_pred CEEEEECCcc-cHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-----CCCCCCEEEEcc
Q 048309 71 HEVLEIGCGW-GTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-----KAKKYDRIISCE 144 (288)
Q Consensus 71 ~~vLDiGcG~-G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-----~~~~fD~I~~~~ 144 (288)
.+|+=+|||. |..........+.+|+++|.+++.++.+++ . .+.++.+|..+.. .-..+|++++..
T Consensus 8 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~----~----g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~ 79 (140)
T 3fwz_A 8 NHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELRE----R----GVRAVLGNAANEEIMQLAHLECAKWLILTI 79 (140)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH----T----TCEEEESCTTSHHHHHHTTGGGCSEEEECC
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH----c----CCCEEECCCCCHHHHHhcCcccCCEEEEEC
Confidence 5788899985 554333333357899999999998876653 2 3578999987643 235789888753
Q ss_pred chhhhCHhhHHHHHHHHhcccccCcEEEE
Q 048309 145 MMEAVGHEYMEEYFGCCESLLAKDGLLVL 173 (288)
Q Consensus 145 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~~ 173 (288)
.-. .....+....+.+.|+..++.
T Consensus 80 ~~~-----~~n~~~~~~a~~~~~~~~iia 103 (140)
T 3fwz_A 80 PNG-----YEAGEIVASARAKNPDIEIIA 103 (140)
T ss_dssp SCH-----HHHHHHHHHHHHHCSSSEEEE
T ss_pred CCh-----HHHHHHHHHHHHHCCCCeEEE
Confidence 221 112223334456678877665
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=95.66 E-value=0.019 Score=50.23 Aligned_cols=59 Identities=17% Similarity=0.143 Sum_probs=46.0
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCH---HHHHHHHHHHHHcC
Q 048309 56 RKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSA---EQMKYAEMKVNEAG 116 (288)
Q Consensus 56 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~---~~~~~a~~~~~~~g 116 (288)
..+..++.... .++..|||.-||+|+.+....+. +.+.+|+|+++ ..++.++++++..+
T Consensus 230 ~l~~~~i~~~~-~~~~~vlDpF~GsGtt~~aa~~~-~r~~ig~e~~~~~~~~~~~~~~Rl~~~~ 291 (319)
T 1eg2_A 230 AVIERLVRALS-HPGSTVLDFFAGSGVTARVAIQE-GRNSICTDAAPVFKEYYQKQLTFLQDDG 291 (319)
T ss_dssp HHHHHHHHHHS-CTTCEEEETTCTTCHHHHHHHHH-TCEEEEEESSTHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHhC-CCCCEEEecCCCCCHHHHHHHHc-CCcEEEEECCccHHHHHHHHHHHHHHcc
Confidence 34556666553 57889999999999998887774 88999999999 99999999987654
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.63 E-value=0.03 Score=49.29 Aligned_cols=92 Identities=18% Similarity=0.273 Sum_probs=64.7
Q ss_pred cCCCCCCEEEEECC--cccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC---------C
Q 048309 65 ARVSKEHEVLEIGC--GWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP---------K 133 (288)
Q Consensus 65 ~~~~~~~~vLDiGc--G~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~---------~ 133 (288)
.+++++.+||-+|+ |.|..+..+++..+++|+++|.+++.++.+++. |.. .++ |..+.. .
T Consensus 162 ~~~~~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~----ga~---~~~--d~~~~~~~~~~~~~~~ 232 (343)
T 2eih_A 162 LGVRPGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRAKAL----GAD---ETV--NYTHPDWPKEVRRLTG 232 (343)
T ss_dssp SCCCTTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH----TCS---EEE--ETTSTTHHHHHHHHTT
T ss_pred cCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhc----CCC---EEE--cCCcccHHHHHHHHhC
Confidence 46788999999998 568888888887788999999999888877642 321 222 222111 1
Q ss_pred CCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 134 AKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 134 ~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
...+|+|+.... . ..++.+.+.|+++|+++..
T Consensus 233 ~~~~d~vi~~~g-~--------~~~~~~~~~l~~~G~~v~~ 264 (343)
T 2eih_A 233 GKGADKVVDHTG-A--------LYFEGVIKATANGGRIAIA 264 (343)
T ss_dssp TTCEEEEEESSC-S--------SSHHHHHHHEEEEEEEEES
T ss_pred CCCceEEEECCC-H--------HHHHHHHHhhccCCEEEEE
Confidence 247999987643 1 2355667889999998874
|
| >3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A* | Back alignment and structure |
|---|
Probab=95.62 E-value=0.15 Score=44.89 Aligned_cols=109 Identities=8% Similarity=0.080 Sum_probs=75.3
Q ss_pred CCCEEEEECCcccHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcC----------------------CCCceEEE
Q 048309 69 KEHEVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQMKYAEMKVNEAG----------------------LQDHIRLY 124 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~~la~~--~~~~v~giD~s~~~~~~a~~~~~~~g----------------------~~~~v~~~ 124 (288)
+...|+-+|||.=.....+... .+..++=||. |+.++.=++.+...+ -+.+.+.+
T Consensus 90 ~~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EVD~-P~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~l~s~~y~~v 168 (334)
T 3iei_A 90 CHCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDF-PMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVI 168 (334)
T ss_dssp TCSEEEEETCTTCCHHHHHHHTTCCCSEEEEEEC-HHHHHHHHHHHHHCHHHHHHHHHHSSSSSCBCCTTEEECSSEEEE
T ss_pred CCCEEEEeCCCcCchHHHhcCCCCCCCeEEECCc-HHHHHHHHHHHhhchhhhhhhcccccccccccccccCCCCceEEE
Confidence 4568999999987777777653 3567888886 666655444444311 13578899
Q ss_pred EcccCCCC-----------CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCC
Q 048309 125 LCDYRQLP-----------KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTP 179 (288)
Q Consensus 125 ~~d~~~~~-----------~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 179 (288)
..|+.+.. .....=++++-+++.+++++...++++.+.+...+ |.+++-+...+
T Consensus 169 ~~DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL~~~~~~~ll~~ia~~f~~-~~~i~yE~i~p 233 (334)
T 3iei_A 169 GADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSFER-AMFINYEQVNM 233 (334)
T ss_dssp ECCTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCSS-EEEEEEEECCT
T ss_pred ccccccchhHHHHHHhcCCCCCCCEEEEEchhhhCCCHHHHHHHHHHHHHhCCC-ceEEEEeccCC
Confidence 99997631 12344578888999999999999999999887755 45444444433
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=95.54 E-value=0.018 Score=49.97 Aligned_cols=135 Identities=15% Similarity=0.196 Sum_probs=73.4
Q ss_pred hhhhcCCCCCCCHHHHHHHHHHH--HHHHcCCCCCCEEEEECCcccHHHHHHHH-----ccCC--EEEEEcCCH------
Q 048309 38 ISYHYDLDEDEDLKVAQMRKHSL--LIEKARVSKEHEVLEIGCGWGTFAIEVVR-----QTGC--NYTGITLSA------ 102 (288)
Q Consensus 38 ~a~~Yd~~~~~~l~~a~~~~~~~--l~~~~~~~~~~~vLDiGcG~G~~~~~la~-----~~~~--~v~giD~s~------ 102 (288)
+..+|-...+..+.+++...+.. +.++....+.-+|||+|-|+|.+...... .+.. +++.+|..+
T Consensus 63 f~e~YhS~~~GAl~Es~hVFi~~~~L~~r~~~~~~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~ 142 (308)
T 3vyw_A 63 YGEPYHSQTAGAIRESLYKFVRPSRILEKAKERKVIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPI 142 (308)
T ss_dssp TTEESSCTTTCHHHHHHHHTHHHHTHHHHHHHCSEEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCC
T ss_pred cCCccCCCCCcHHHHHHHHHhccCCchHHhcCCCCcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHh
Confidence 34444432122366666665532 33443333456899999999997543321 1333 456666321
Q ss_pred --H-HHHHHHHHHHHc----CCCCceEEEEcccCCC-C--CCCCCCEEEEccchhhhCHhh-HHHHHHHHhcccccCcEE
Q 048309 103 --E-QMKYAEMKVNEA----GLQDHIRLYLCDYRQL-P--KAKKYDRIISCEMMEAVGHEY-MEEYFGCCESLLAKDGLL 171 (288)
Q Consensus 103 --~-~~~~a~~~~~~~----g~~~~v~~~~~d~~~~-~--~~~~fD~I~~~~~l~~~~~~~-~~~~l~~~~~~LkpgG~l 171 (288)
+ ..+..+...... +-.-.+++..+|+.+. + ....+|+|+..+.-..-.++- -.++++++.++++|||++
T Consensus 143 ~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GDa~~~l~~l~~~~~Da~flDgFsP~kNPeLWs~e~f~~l~~~~~pgg~l 222 (308)
T 3vyw_A 143 LPEPYREIHEFLLERVPEYEGERLSLKVLLGDARKRIKEVENFKADAVFHDAFSPYKNPELWTLDFLSLIKERIDEKGYW 222 (308)
T ss_dssp CCTTSHHHHHHHHHHCSEEECSSEEEEEEESCHHHHGGGCCSCCEEEEEECCSCTTTSGGGGSHHHHHHHHTTEEEEEEE
T ss_pred chHhHHHHHHHHHHhCccccCCcEEEEEEechHHHHHhhhcccceeEEEeCCCCcccCcccCCHHHHHHHHHHhCCCcEE
Confidence 1 112222222221 1001346788888663 3 335799999875221111111 267999999999999987
Q ss_pred E
Q 048309 172 V 172 (288)
Q Consensus 172 ~ 172 (288)
.
T Consensus 223 a 223 (308)
T 3vyw_A 223 V 223 (308)
T ss_dssp E
T ss_pred E
Confidence 6
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=95.46 E-value=0.0015 Score=57.73 Aligned_cols=95 Identities=20% Similarity=0.103 Sum_probs=64.0
Q ss_pred HcCCCCCCEEEEECCcc-cHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC------CCC
Q 048309 64 KARVSKEHEVLEIGCGW-GTFAIEVVRQTGC-NYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP------KAK 135 (288)
Q Consensus 64 ~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~------~~~ 135 (288)
..++ ++.+||-+|+|. |..+..+++..++ +|+++|.+++.++.+++. . + .++..+-.++. ...
T Consensus 160 ~~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~l-a-----~--~v~~~~~~~~~~~~~~~~~~ 230 (343)
T 2dq4_A 160 GSGV-SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPY-A-----D--RLVNPLEEDLLEVVRRVTGS 230 (343)
T ss_dssp TTCC-TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTT-C-----S--EEECTTTSCHHHHHHHHHSS
T ss_pred hCCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-H-----H--hccCcCccCHHHHHHHhcCC
Confidence 5677 899999999865 8888888887777 899999999877766543 1 1 12211111111 134
Q ss_pred CCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 136 KYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 136 ~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
.+|+|+-.-.- ...++.+.+.|+++|+++...
T Consensus 231 g~D~vid~~g~--------~~~~~~~~~~l~~~G~iv~~g 262 (343)
T 2dq4_A 231 GVEVLLEFSGN--------EAAIHQGLMALIPGGEARILG 262 (343)
T ss_dssp CEEEEEECSCC--------HHHHHHHHHHEEEEEEEEECC
T ss_pred CCCEEEECCCC--------HHHHHHHHHHHhcCCEEEEEe
Confidence 69999865321 234566778999999988743
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=95.43 E-value=0.016 Score=51.45 Aligned_cols=95 Identities=19% Similarity=0.154 Sum_probs=64.1
Q ss_pred HHcCCCCC------CEEEEECCcc-cHHH-HHHH-HccCCE-EEEEcCCHH---HHHHHHHHHHHcCCCCceEEEEcccC
Q 048309 63 EKARVSKE------HEVLEIGCGW-GTFA-IEVV-RQTGCN-YTGITLSAE---QMKYAEMKVNEAGLQDHIRLYLCDYR 129 (288)
Q Consensus 63 ~~~~~~~~------~~vLDiGcG~-G~~~-~~la-~~~~~~-v~giD~s~~---~~~~a~~~~~~~g~~~~v~~~~~d~~ 129 (288)
...+++++ .+||-+|+|. |..+ ..++ +..+++ |+++|.+++ ..+.+++ .|. +.+ |..
T Consensus 160 ~~~~~~~g~~~~~~~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~~----lGa----~~v--~~~ 229 (357)
T 2b5w_A 160 EHAYASRSAFDWDPSSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEE----LDA----TYV--DSR 229 (357)
T ss_dssp HHHHHTTTTSCCCCCEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHHH----TTC----EEE--ETT
T ss_pred HhcCCCCCcccCCCCEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHHH----cCC----ccc--CCC
Confidence 44556678 9999999875 8888 9999 766776 999999887 7776653 342 222 332
Q ss_pred CCC------CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 130 QLP------KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 130 ~~~------~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
+.. ..+.+|+|+-.-.- ...++.+.+.|+++|+++...
T Consensus 230 ~~~~~~i~~~~gg~Dvvid~~g~--------~~~~~~~~~~l~~~G~iv~~g 273 (357)
T 2b5w_A 230 QTPVEDVPDVYEQMDFIYEATGF--------PKHAIQSVQALAPNGVGALLG 273 (357)
T ss_dssp TSCGGGHHHHSCCEEEEEECSCC--------HHHHHHHHHHEEEEEEEEECC
T ss_pred ccCHHHHHHhCCCCCEEEECCCC--------hHHHHHHHHHHhcCCEEEEEe
Confidence 211 01378998854221 234667778999999988743
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=95.42 E-value=0.078 Score=46.83 Aligned_cols=97 Identities=25% Similarity=0.196 Sum_probs=64.9
Q ss_pred HHcCCCCCCEEEEECC--cccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCC-------CC
Q 048309 63 EKARVSKEHEVLEIGC--GWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQL-------PK 133 (288)
Q Consensus 63 ~~~~~~~~~~vLDiGc--G~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~-------~~ 133 (288)
+..+++++.+||-.|+ |.|..+..+++..+++|+++|.+++.++.+++. |.. .++..+-.+. ..
T Consensus 156 ~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~----g~~---~~~~~~~~~~~~~~~~~~~ 228 (354)
T 2j8z_A 156 LVGNVQAGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMAEKL----GAA---AGFNYKKEDFSEATLKFTK 228 (354)
T ss_dssp TTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH----TCS---EEEETTTSCHHHHHHHHTT
T ss_pred HhcCCCCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHc----CCc---EEEecCChHHHHHHHHHhc
Confidence 4567788999999983 468888888877788999999999888777433 321 2222111111 12
Q ss_pred CCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 134 AKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 134 ~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
...+|+++.+..-. .+..+.+.|+++|++++..
T Consensus 229 ~~~~d~vi~~~G~~---------~~~~~~~~l~~~G~iv~~G 261 (354)
T 2j8z_A 229 GAGVNLILDCIGGS---------YWEKNVNCLALDGRWVLYG 261 (354)
T ss_dssp TSCEEEEEESSCGG---------GHHHHHHHEEEEEEEEECC
T ss_pred CCCceEEEECCCch---------HHHHHHHhccCCCEEEEEe
Confidence 24699998754321 2455668899999988743
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=95.40 E-value=0.069 Score=46.63 Aligned_cols=95 Identities=17% Similarity=0.166 Sum_probs=65.6
Q ss_pred HHcCCCCCCEEEEECC--cccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC--------
Q 048309 63 EKARVSKEHEVLEIGC--GWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-------- 132 (288)
Q Consensus 63 ~~~~~~~~~~vLDiGc--G~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-------- 132 (288)
+..+++++.+||-.|+ |.|..+..+++..+++|+++|.+++..+.+++. |.. .++ |..+..
T Consensus 139 ~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~----g~~---~~~--d~~~~~~~~~i~~~ 209 (333)
T 1wly_A 139 QTHKVKPGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEEKAETARKL----GCH---HTI--NYSTQDFAEVVREI 209 (333)
T ss_dssp TTSCCCTTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH----TCS---EEE--ETTTSCHHHHHHHH
T ss_pred HhhCCCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc----CCC---EEE--ECCCHHHHHHHHHH
Confidence 3457788999999994 568888888877788999999999887777542 321 222 222211
Q ss_pred -CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 133 -KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 133 -~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
....+|+++.+..- ..++.+.+.|+++|+++...
T Consensus 210 ~~~~~~d~vi~~~g~---------~~~~~~~~~l~~~G~iv~~g 244 (333)
T 1wly_A 210 TGGKGVDVVYDSIGK---------DTLQKSLDCLRPRGMCAAYG 244 (333)
T ss_dssp HTTCCEEEEEECSCT---------TTHHHHHHTEEEEEEEEECC
T ss_pred hCCCCCeEEEECCcH---------HHHHHHHHhhccCCEEEEEe
Confidence 13469999865431 34566778999999988743
|
| >3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* | Back alignment and structure |
|---|
Probab=95.40 E-value=0.06 Score=46.78 Aligned_cols=97 Identities=16% Similarity=0.270 Sum_probs=64.9
Q ss_pred HHcCCCCCC-EEEEECC-c-ccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEE-cccCCCC--CCCC
Q 048309 63 EKARVSKEH-EVLEIGC-G-WGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYL-CDYRQLP--KAKK 136 (288)
Q Consensus 63 ~~~~~~~~~-~vLDiGc-G-~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~-~d~~~~~--~~~~ 136 (288)
.....+++. +||-+|+ | .|..+.++++..+++|++++.+++..+.+++. |.. .++. .+..... ..+.
T Consensus 139 ~~~~~~~~~g~VlV~Ga~G~vG~~aiqla~~~Ga~Vi~~~~~~~~~~~~~~l----Ga~---~vi~~~~~~~~~~~~~~~ 211 (324)
T 3nx4_A 139 EDAGIRPQDGEVVVTGASGGVGSTAVALLHKLGYQVAAVSGRESTHGYLKSL----GAN---RILSRDEFAESRPLEKQL 211 (324)
T ss_dssp HHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHH----TCS---EEEEGGGSSCCCSSCCCC
T ss_pred hhcccCCCCCeEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhc----CCC---EEEecCCHHHHHhhcCCC
Confidence 444455532 4999997 4 59999999988788999999999888888653 431 2222 1211111 3357
Q ss_pred CCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 137 YDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 137 fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
+|+++-. .+. ..++.+.+.|+++|+++...
T Consensus 212 ~d~v~d~-----~g~----~~~~~~~~~l~~~G~iv~~G 241 (324)
T 3nx4_A 212 WAGAIDT-----VGD----KVLAKVLAQMNYGGCVAACG 241 (324)
T ss_dssp EEEEEES-----SCH----HHHHHHHHTEEEEEEEEECC
T ss_pred ccEEEEC-----CCc----HHHHHHHHHHhcCCEEEEEe
Confidence 8988753 221 26777889999999998753
|
| >3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A | Back alignment and structure |
|---|
Probab=95.37 E-value=0.084 Score=48.38 Aligned_cols=94 Identities=18% Similarity=0.242 Sum_probs=65.7
Q ss_pred cCCCCCCEEEEECC-c-ccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCC-----------
Q 048309 65 ARVSKEHEVLEIGC-G-WGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQL----------- 131 (288)
Q Consensus 65 ~~~~~~~~vLDiGc-G-~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~----------- 131 (288)
..+++|.+||-+|+ | .|..+..+++..++++++++.+++.++.+++. |.. .++...-.++
T Consensus 224 ~~~~~g~~VlV~GasG~vG~~avqlak~~Ga~vi~~~~~~~~~~~~~~l----Ga~---~vi~~~~~d~~~~~~~~~~~~ 296 (456)
T 3krt_A 224 AGMKQGDNVLIWGASGGLGSYATQFALAGGANPICVVSSPQKAEICRAM----GAE---AIIDRNAEGYRFWKDENTQDP 296 (456)
T ss_dssp TCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH----TCC---EEEETTTTTCCSEEETTEECH
T ss_pred cCCCCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEECCHHHHHHHHhh----CCc---EEEecCcCcccccccccccch
Confidence 56789999999997 5 58999999988888999999999888877653 431 2222111111
Q ss_pred -------------CCCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 132 -------------PKAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 132 -------------~~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
.....+|+|+-.-. ...+..+.+.|++||++++.
T Consensus 297 ~~~~~~~~~i~~~t~g~g~Dvvid~~G---------~~~~~~~~~~l~~~G~iv~~ 343 (456)
T 3krt_A 297 KEWKRFGKRIRELTGGEDIDIVFEHPG---------RETFGASVFVTRKGGTITTC 343 (456)
T ss_dssp HHHHHHHHHHHHHHTSCCEEEEEECSC---------HHHHHHHHHHEEEEEEEEES
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEcCC---------chhHHHHHHHhhCCcEEEEE
Confidence 12357999886422 13566677899999999874
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=95.23 E-value=0.085 Score=46.37 Aligned_cols=94 Identities=18% Similarity=0.218 Sum_probs=65.5
Q ss_pred HHHcCCCCCCEEEEEC-Cc-ccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-------
Q 048309 62 IEKARVSKEHEVLEIG-CG-WGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP------- 132 (288)
Q Consensus 62 ~~~~~~~~~~~vLDiG-cG-~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~------- 132 (288)
.+...++++.+||-+| +| .|..+..+++..+++|+++ .+++.++.+++. |. ..+. +-.++.
T Consensus 143 ~~~~~~~~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~-~~~~~~~~~~~l----Ga----~~i~-~~~~~~~~~~~~~ 212 (343)
T 3gaz_A 143 VDRAQVQDGQTVLIQGGGGGVGHVAIQIALARGARVFAT-ARGSDLEYVRDL----GA----TPID-ASREPEDYAAEHT 212 (343)
T ss_dssp TTTTCCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE-ECHHHHHHHHHH----TS----EEEE-TTSCHHHHHHHHH
T ss_pred HHhcCCCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEE-eCHHHHHHHHHc----CC----CEec-cCCCHHHHHHHHh
Confidence 3566788999999999 34 5899999988878899999 888887776543 43 2222 222211
Q ss_pred CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 133 KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 133 ~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
....+|+|+-.-. ...+..+.+.|+++|++++.
T Consensus 213 ~~~g~D~vid~~g---------~~~~~~~~~~l~~~G~iv~~ 245 (343)
T 3gaz_A 213 AGQGFDLVYDTLG---------GPVLDASFSAVKRFGHVVSC 245 (343)
T ss_dssp TTSCEEEEEESSC---------THHHHHHHHHEEEEEEEEES
T ss_pred cCCCceEEEECCC---------cHHHHHHHHHHhcCCeEEEE
Confidence 2357999886432 13466677899999998873
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=95.03 E-value=0.11 Score=45.83 Aligned_cols=100 Identities=15% Similarity=0.175 Sum_probs=67.6
Q ss_pred HHHHHHHcCCCCC--CEEEEECC--cccHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC
Q 048309 58 HSLLIEKARVSKE--HEVLEIGC--GWGTFAIEVVRQTGC-NYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP 132 (288)
Q Consensus 58 ~~~l~~~~~~~~~--~~vLDiGc--G~G~~~~~la~~~~~-~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~ 132 (288)
+..+.+..+++++ .+||-.|+ |.|..+..+++..++ +|+++|.+++..+.+++. .|.. .++ |..+..
T Consensus 147 ~~al~~~~~~~~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~~---~g~~---~~~--d~~~~~ 218 (357)
T 2zb4_A 147 LIGIQEKGHITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSE---LGFD---AAI--NYKKDN 218 (357)
T ss_dssp HHHHHHHSCCCTTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT---SCCS---EEE--ETTTSC
T ss_pred HHHHHHhcCCCCCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHH---cCCc---eEE--ecCchH
Confidence 3344466778889 99999997 458888888877777 999999998777666532 2431 222 222211
Q ss_pred --------CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 133 --------KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 133 --------~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
..+.+|+++.+.. ...++.+.+.|+++|++++.
T Consensus 219 ~~~~~~~~~~~~~d~vi~~~G---------~~~~~~~~~~l~~~G~iv~~ 259 (357)
T 2zb4_A 219 VAEQLRESCPAGVDVYFDNVG---------GNISDTVISQMNENSHIILC 259 (357)
T ss_dssp HHHHHHHHCTTCEEEEEESCC---------HHHHHHHHHTEEEEEEEEEC
T ss_pred HHHHHHHhcCCCCCEEEECCC---------HHHHHHHHHHhccCcEEEEE
Confidence 1236899887543 14567778999999999874
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.86 E-value=0.1 Score=46.40 Aligned_cols=92 Identities=20% Similarity=0.181 Sum_probs=59.9
Q ss_pred CCCCCEEEEEC-Cc-ccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC----CCCCCCEE
Q 048309 67 VSKEHEVLEIG-CG-WGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP----KAKKYDRI 140 (288)
Q Consensus 67 ~~~~~~vLDiG-cG-~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~----~~~~fD~I 140 (288)
++++.+||-+| +| .|..+..+++..+++|++++ +++..+.++ +.|.. .++..+-.++. ....+|+|
T Consensus 181 ~~~g~~VlV~Ga~G~vG~~~~qla~~~Ga~Vi~~~-~~~~~~~~~----~lGa~---~v~~~~~~~~~~~~~~~~g~D~v 252 (375)
T 2vn8_A 181 NCTGKRVLILGASGGVGTFAIQVMKAWDAHVTAVC-SQDASELVR----KLGAD---DVIDYKSGSVEEQLKSLKPFDFI 252 (375)
T ss_dssp TCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE-CGGGHHHHH----HTTCS---EEEETTSSCHHHHHHTSCCBSEE
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEe-ChHHHHHHH----HcCCC---EEEECCchHHHHHHhhcCCCCEE
Confidence 77899999999 45 58999999888788999998 666555553 34431 22222111111 22579999
Q ss_pred EEccchhhhCHhhHHHHHHHHhcccccCcEEEE
Q 048309 141 ISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVL 173 (288)
Q Consensus 141 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~ 173 (288)
+-.-.-. ...+....+.|++||+++.
T Consensus 253 id~~g~~-------~~~~~~~~~~l~~~G~iv~ 278 (375)
T 2vn8_A 253 LDNVGGS-------TETWAPDFLKKWSGATYVT 278 (375)
T ss_dssp EESSCTT-------HHHHGGGGBCSSSCCEEEE
T ss_pred EECCCCh-------hhhhHHHHHhhcCCcEEEE
Confidence 8653211 1234566789999999887
|
| >2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* | Back alignment and structure |
|---|
Probab=94.83 E-value=0.013 Score=52.02 Aligned_cols=100 Identities=20% Similarity=0.221 Sum_probs=64.4
Q ss_pred HHHHcCCC-CCCEEEEECCcc-cHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEc-ccCCCC-CCCC
Q 048309 61 LIEKARVS-KEHEVLEIGCGW-GTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLC-DYRQLP-KAKK 136 (288)
Q Consensus 61 l~~~~~~~-~~~~vLDiGcG~-G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~-d~~~~~-~~~~ 136 (288)
.+...... ++.+||-+|+|. |..+..+++..+++|+++|.+++..+.+++ +.|.. .++.. +...+. ..+.
T Consensus 171 ~l~~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~~~~~~~~~~~~---~lGa~---~vi~~~~~~~~~~~~~g 244 (357)
T 2cf5_A 171 PLSHFGLKQPGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSNKKREEALQ---DLGAD---DYVIGSDQAKMSELADS 244 (357)
T ss_dssp HHHHTSTTSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSTTHHHHHHT---TSCCS---CEEETTCHHHHHHSTTT
T ss_pred HHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH---HcCCc---eeeccccHHHHHHhcCC
Confidence 34556777 899999999875 888888888777899999998877666542 23431 12211 111111 2246
Q ss_pred CCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 137 YDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 137 fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
+|+|+-.-.-. ..++.+.+.|+++|+++..
T Consensus 245 ~D~vid~~g~~--------~~~~~~~~~l~~~G~iv~~ 274 (357)
T 2cf5_A 245 LDYVIDTVPVH--------HALEPYLSLLKLDGKLILM 274 (357)
T ss_dssp EEEEEECCCSC--------CCSHHHHTTEEEEEEEEEC
T ss_pred CCEEEECCCCh--------HHHHHHHHHhccCCEEEEe
Confidence 99988643211 1234455899999998874
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=94.82 E-value=0.05 Score=48.27 Aligned_cols=93 Identities=23% Similarity=0.230 Sum_probs=63.4
Q ss_pred HcCCC--C-------CCEEEEECCcc-cHHHHHHHHccCCEEEEEcCCH---HHHHHHHHHHHHcCCCCceEEEEcccC-
Q 048309 64 KARVS--K-------EHEVLEIGCGW-GTFAIEVVRQTGCNYTGITLSA---EQMKYAEMKVNEAGLQDHIRLYLCDYR- 129 (288)
Q Consensus 64 ~~~~~--~-------~~~vLDiGcG~-G~~~~~la~~~~~~v~giD~s~---~~~~~a~~~~~~~g~~~~v~~~~~d~~- 129 (288)
..+++ + +.+||-+|+|. |..+..+++..+++|+++|.++ +..+.+++. |. +.+ | .
T Consensus 166 ~~~~~~~~~~~~~~~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~~~----ga----~~v--~-~~ 234 (366)
T 2cdc_A 166 QKRVPVWTCDDGTLNCRKVLVVGTGPIGVLFTLLFRTYGLEVWMANRREPTEVEQTVIEET----KT----NYY--N-SS 234 (366)
T ss_dssp GGGSSCCSCTTSSSTTCEEEEESCHHHHHHHHHHHHHHTCEEEEEESSCCCHHHHHHHHHH----TC----EEE--E-CT
T ss_pred ccCccccccccccCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCccchHHHHHHHHh----CC----cee--c-hH
Confidence 55666 7 99999999864 7778888877678999999987 666666542 32 222 2 2
Q ss_pred CCC-----CCCCCCEEEEccchhhhCHhhHHHHH-HHHhcccccCcEEEEEe
Q 048309 130 QLP-----KAKKYDRIISCEMMEAVGHEYMEEYF-GCCESLLAKDGLLVLQF 175 (288)
Q Consensus 130 ~~~-----~~~~fD~I~~~~~l~~~~~~~~~~~l-~~~~~~LkpgG~l~~~~ 175 (288)
++. ..+.+|+|+...... ..+ +.+.+.|+++|++++..
T Consensus 235 ~~~~~~~~~~~~~d~vid~~g~~--------~~~~~~~~~~l~~~G~iv~~g 278 (366)
T 2cdc_A 235 NGYDKLKDSVGKFDVIIDATGAD--------VNILGNVIPLLGRNGVLGLFG 278 (366)
T ss_dssp TCSHHHHHHHCCEEEEEECCCCC--------THHHHHHGGGEEEEEEEEECS
T ss_pred HHHHHHHHhCCCCCEEEECCCCh--------HHHHHHHHHHHhcCCEEEEEe
Confidence 221 014699998753321 134 67789999999988743
|
| >1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52 | Back alignment and structure |
|---|
Probab=94.75 E-value=0.29 Score=43.82 Aligned_cols=53 Identities=15% Similarity=0.227 Sum_probs=38.2
Q ss_pred HHHHcCCCCCCEEEEECCcccHHHHHHHHc--------cCCEEEEEcCCHHHHHHHHHHHH
Q 048309 61 LIEKARVSKEHEVLEIGCGWGTFAIEVVRQ--------TGCNYTGITLSAEQMKYAEMKVN 113 (288)
Q Consensus 61 l~~~~~~~~~~~vLDiGcG~G~~~~~la~~--------~~~~v~giD~s~~~~~~a~~~~~ 113 (288)
..+.++.+.+-.|+|+|.|.|.++..+.+. ...+++.||+|+...+.=++++.
T Consensus 72 ~w~~~g~p~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L~ 132 (387)
T 1zkd_A 72 VWKAADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLA 132 (387)
T ss_dssp HHHHTTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHST
T ss_pred HHHHcCCCCCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHhc
Confidence 334455445568999999999998877642 13489999999988775555543
|
| >2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.72 E-value=0.14 Score=44.21 Aligned_cols=75 Identities=16% Similarity=0.207 Sum_probs=56.8
Q ss_pred CCCCEEEEECCcccHHHHHHHHccCCE---EEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-----CCCCCCE
Q 048309 68 SKEHEVLEIGCGWGTFAIEVVRQTGCN---YTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-----KAKKYDR 139 (288)
Q Consensus 68 ~~~~~vLDiGcG~G~~~~~la~~~~~~---v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-----~~~~fD~ 139 (288)
..+.+++|+-||.|.++.-+.+. |.+ |.++|+++.+++.-+.+.. ...++.+|+.++. ..+.+|+
T Consensus 14 ~~~~~vidLFaG~GG~~~g~~~a-G~~~~~v~a~E~d~~a~~ty~~N~~------~~~~~~~DI~~i~~~~i~~~~~~Dl 86 (295)
T 2qrv_A 14 RKPIRVLSLFDGIATGLLVLKDL-GIQVDRYIASEVCEDSITVGMVRHQ------GKIMYVGDVRSVTQKHIQEWGPFDL 86 (295)
T ss_dssp CCCEEEEEETCTTTHHHHHHHHT-TBCEEEEEEECCCHHHHHHHHHHTT------TCEEEECCGGGCCHHHHHHTCCCSE
T ss_pred CCCCEEEEeCcCccHHHHHHHHC-CCccceEEEEECCHHHHHHHHHhCC------CCceeCCChHHccHHHhcccCCcCE
Confidence 35568999999999999888775 433 5899999998876666542 3468899999876 1247999
Q ss_pred EEEccchhhh
Q 048309 140 IISCEMMEAV 149 (288)
Q Consensus 140 I~~~~~l~~~ 149 (288)
++....+..+
T Consensus 87 l~ggpPCQ~f 96 (295)
T 2qrv_A 87 VIGGSPCNDL 96 (295)
T ss_dssp EEECCCCGGG
T ss_pred EEecCCCccc
Confidence 9998765554
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=94.54 E-value=0.02 Score=50.91 Aligned_cols=101 Identities=21% Similarity=0.182 Sum_probs=64.3
Q ss_pred HHHHcCCC-CCCEEEEECCcc-cHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEc-ccCCCC-CCCC
Q 048309 61 LIEKARVS-KEHEVLEIGCGW-GTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLC-DYRQLP-KAKK 136 (288)
Q Consensus 61 l~~~~~~~-~~~~vLDiGcG~-G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~-d~~~~~-~~~~ 136 (288)
.+...... ++.+||-+|+|. |..+..+++..+++|++++.+++..+.+++ ..|.. .++.. +...+. ..+.
T Consensus 178 al~~~~~~~~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~---~lGa~---~v~~~~~~~~~~~~~~~ 251 (366)
T 1yqd_A 178 PLKYFGLDEPGKHIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPSKKEEALK---NFGAD---SFLVSRDQEQMQAAAGT 251 (366)
T ss_dssp HHHHTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHH---TSCCS---EEEETTCHHHHHHTTTC
T ss_pred HHHhcCcCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH---hcCCc---eEEeccCHHHHHHhhCC
Confidence 34556777 899999999875 888888888778899999999877666542 23431 22211 111111 2247
Q ss_pred CCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 137 YDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 137 fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
+|+|+..-.... .++.+.+.|+++|+++...
T Consensus 252 ~D~vid~~g~~~--------~~~~~~~~l~~~G~iv~~g 282 (366)
T 1yqd_A 252 LDGIIDTVSAVH--------PLLPLFGLLKSHGKLILVG 282 (366)
T ss_dssp EEEEEECCSSCC--------CSHHHHHHEEEEEEEEECC
T ss_pred CCEEEECCCcHH--------HHHHHHHHHhcCCEEEEEc
Confidence 999986533211 1234457889999988743
|
| >1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A* | Back alignment and structure |
|---|
Probab=94.53 E-value=0.04 Score=48.12 Aligned_cols=97 Identities=19% Similarity=0.223 Sum_probs=64.4
Q ss_pred HHcCCCCCC-EEEEECC-c-ccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEc-cc--CCCC--CC
Q 048309 63 EKARVSKEH-EVLEIGC-G-WGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLC-DY--RQLP--KA 134 (288)
Q Consensus 63 ~~~~~~~~~-~vLDiGc-G-~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~-d~--~~~~--~~ 134 (288)
...+++++. +||-+|+ | .|..+..+++..+++|++++.+++..+.+++. |.. .++.. +. .... ..
T Consensus 143 ~~~~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~~l----Ga~---~v~~~~~~~~~~~~~~~~ 215 (330)
T 1tt7_A 143 EQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQL----GAS---EVISREDVYDGTLKALSK 215 (330)
T ss_dssp HHTTCCGGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHHH----TCS---EEEEHHHHCSSCCCSSCC
T ss_pred HhcCcCCCCceEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc----CCc---EEEECCCchHHHHHHhhc
Confidence 345677775 8999997 4 58889999887778999999988777777542 431 22221 11 1111 23
Q ss_pred CCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 135 KKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 135 ~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
+.+|+|+-.-. . ..+..+.+.|+++|++++..
T Consensus 216 ~~~d~vid~~g-------~--~~~~~~~~~l~~~G~iv~~G 247 (330)
T 1tt7_A 216 QQWQGAVDPVG-------G--KQLASLLSKIQYGGSVAVSG 247 (330)
T ss_dssp CCEEEEEESCC-------T--HHHHHHHTTEEEEEEEEECC
T ss_pred CCccEEEECCc-------H--HHHHHHHHhhcCCCEEEEEe
Confidence 46898886432 1 24667779999999998743
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=94.41 E-value=0.28 Score=38.60 Aligned_cols=92 Identities=16% Similarity=0.070 Sum_probs=55.5
Q ss_pred CCEEEEECCcc-cHHHHHHHHcc-CCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC----C--CCCCCEEE
Q 048309 70 EHEVLEIGCGW-GTFAIEVVRQT-GCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP----K--AKKYDRII 141 (288)
Q Consensus 70 ~~~vLDiGcG~-G~~~~~la~~~-~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~----~--~~~fD~I~ 141 (288)
+.+|+=+|||. |......+... +.+|+++|.+++.++.+++ .| +.++.+|..+.. . ...+|+|+
T Consensus 39 ~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~----~g----~~~~~gd~~~~~~l~~~~~~~~ad~vi 110 (183)
T 3c85_A 39 HAQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQHRS----EG----RNVISGDATDPDFWERILDTGHVKLVL 110 (183)
T ss_dssp TCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHH----TT----CCEEECCTTCHHHHHTBCSCCCCCEEE
T ss_pred CCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHH----CC----CCEEEcCCCCHHHHHhccCCCCCCEEE
Confidence 56899899875 55444433335 7899999999987765542 23 456777775422 1 35789988
Q ss_pred EccchhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 142 SCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 142 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
..-.-. .....+-...+.+.|++.++..
T Consensus 111 ~~~~~~-----~~~~~~~~~~~~~~~~~~ii~~ 138 (183)
T 3c85_A 111 LAMPHH-----QGNQTALEQLQRRNYKGQIAAI 138 (183)
T ss_dssp ECCSSH-----HHHHHHHHHHHHTTCCSEEEEE
T ss_pred EeCCCh-----HHHHHHHHHHHHHCCCCEEEEE
Confidence 743211 1122222344556677777763
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=94.39 E-value=0.05 Score=46.85 Aligned_cols=91 Identities=19% Similarity=0.139 Sum_probs=62.1
Q ss_pred CCCCCEEEEECC--cccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEccc-CCCC-CCCCCCEEEE
Q 048309 67 VSKEHEVLEIGC--GWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDY-RQLP-KAKKYDRIIS 142 (288)
Q Consensus 67 ~~~~~~vLDiGc--G~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~-~~~~-~~~~fD~I~~ 142 (288)
++++.+||-+|+ |.|..+..+++..+++|++++.+++..+.+++ .|.. .++..+- .++. .-+.+|+|+.
T Consensus 123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~----~ga~---~~~~~~~~~~~~~~~~~~d~vid 195 (302)
T 1iz0_A 123 ARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLA----LGAE---EAATYAEVPERAKAWGGLDLVLE 195 (302)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHH----TTCS---EEEEGGGHHHHHHHTTSEEEEEE
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh----cCCC---EEEECCcchhHHHHhcCceEEEE
Confidence 778999999997 45888888888778899999998887776654 3431 2222111 1111 1157999886
Q ss_pred ccchhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 143 CEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 143 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
..- ..++.+.+.|+++|+++..
T Consensus 196 -~g~---------~~~~~~~~~l~~~G~~v~~ 217 (302)
T 1iz0_A 196 -VRG---------KEVEESLGLLAHGGRLVYI 217 (302)
T ss_dssp -CSC---------TTHHHHHTTEEEEEEEEEC
T ss_pred -CCH---------HHHHHHHHhhccCCEEEEE
Confidence 321 2356677999999998863
|
| >3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=94.26 E-value=0.11 Score=45.57 Aligned_cols=72 Identities=10% Similarity=0.075 Sum_probs=55.3
Q ss_pred CCEEEEECCcccHHHHHHHHccC---CEE-EEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC----CCCCCCEEE
Q 048309 70 EHEVLEIGCGWGTFAIEVVRQTG---CNY-TGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP----KAKKYDRII 141 (288)
Q Consensus 70 ~~~vLDiGcG~G~~~~~la~~~~---~~v-~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~----~~~~fD~I~ 141 (288)
..+++|+-||.|.++.-+.+. | ..+ .++|+++.+.+.-+.++.. . ++.+|+.++. +...+|+++
T Consensus 10 ~~~vidLFaG~GG~~~G~~~a-G~~~~~v~~a~e~d~~a~~ty~~N~~~------~-~~~~DI~~~~~~~i~~~~~Dil~ 81 (327)
T 3qv2_A 10 QVNVIEFFSGIGGLRSSYERS-SININATFIPFDINEIANKIYSKNFKE------E-VQVKNLDSISIKQIESLNCNTWF 81 (327)
T ss_dssp CEEEEEETCTTTHHHHHHHHS-SCCCCEEEEEECCCHHHHHHHHHHHCC------C-CBCCCTTTCCHHHHHHTCCCEEE
T ss_pred CCEEEEECCChhHHHHHHHHc-CCCceEEEEEEECCHHHHHHHHHHCCC------C-cccCChhhcCHHHhccCCCCEEE
Confidence 458999999999999988775 4 345 6999999998888877632 1 5678988876 223799999
Q ss_pred Eccchhhh
Q 048309 142 SCEMMEAV 149 (288)
Q Consensus 142 ~~~~l~~~ 149 (288)
....+..+
T Consensus 82 ggpPCQ~f 89 (327)
T 3qv2_A 82 MSPPCQPY 89 (327)
T ss_dssp ECCCCTTC
T ss_pred ecCCccCc
Confidence 87765554
|
| >1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.16 E-value=0.055 Score=47.16 Aligned_cols=96 Identities=17% Similarity=0.266 Sum_probs=62.4
Q ss_pred HHcCCCCCC-EEEEECC--cccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEc-cc-CC-CC--CC
Q 048309 63 EKARVSKEH-EVLEIGC--GWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLC-DY-RQ-LP--KA 134 (288)
Q Consensus 63 ~~~~~~~~~-~vLDiGc--G~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~-d~-~~-~~--~~ 134 (288)
...+++++. +||-+|+ |.|..+..+++..+++|++++.+++..+.+++ .|.. .++.. +. .+ .. ..
T Consensus 142 ~~~~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~~----lGa~---~~i~~~~~~~~~~~~~~~ 214 (328)
T 1xa0_A 142 EEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRV----LGAK---EVLAREDVMAERIRPLDK 214 (328)
T ss_dssp HHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHH----TTCS---EEEECC---------CCS
T ss_pred hhcCCCCCCceEEEecCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH----cCCc---EEEecCCcHHHHHHHhcC
Confidence 445677775 8999997 45899999988878899999998877777654 3431 12211 11 11 11 23
Q ss_pred CCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 135 KKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 135 ~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
+.+|+|+-.-.- ..+..+.+.|+++|++++.
T Consensus 215 ~~~d~vid~~g~---------~~~~~~~~~l~~~G~~v~~ 245 (328)
T 1xa0_A 215 QRWAAAVDPVGG---------RTLATVLSRMRYGGAVAVS 245 (328)
T ss_dssp CCEEEEEECSTT---------TTHHHHHHTEEEEEEEEEC
T ss_pred CcccEEEECCcH---------HHHHHHHHhhccCCEEEEE
Confidence 468988864321 1355667899999998874
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=94.08 E-value=0.27 Score=44.78 Aligned_cols=98 Identities=19% Similarity=0.188 Sum_probs=65.4
Q ss_pred cCCCCCCEEEEECC-c-ccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCC------------
Q 048309 65 ARVSKEHEVLEIGC-G-WGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQ------------ 130 (288)
Q Consensus 65 ~~~~~~~~vLDiGc-G-~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~------------ 130 (288)
.++++|.+||-.|+ | .|..+..+++..++++++++.+++.++.+++ .|...-+.....|..+
T Consensus 216 ~~~~~g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~~~~~~~~~~~----lGa~~~i~~~~~~~~~~~~~~~~~~~~~ 291 (447)
T 4a0s_A 216 AQMKQGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSSAQKEAAVRA----LGCDLVINRAELGITDDIADDPRRVVET 291 (447)
T ss_dssp TCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----TTCCCEEEHHHHTCCTTGGGCHHHHHHH
T ss_pred cCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh----cCCCEEEecccccccccccccccccchh
Confidence 56789999999997 4 4888999988878899999999988877754 3432111111112110
Q ss_pred -------CC--CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 131 -------LP--KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 131 -------~~--~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
+. ....+|+|+-...- ..++.+.+.|++||++++..
T Consensus 292 ~~~~~~~v~~~~g~g~Dvvid~~G~---------~~~~~~~~~l~~~G~iv~~G 336 (447)
T 4a0s_A 292 GRKLAKLVVEKAGREPDIVFEHTGR---------VTFGLSVIVARRGGTVVTCG 336 (447)
T ss_dssp HHHHHHHHHHHHSSCCSEEEECSCH---------HHHHHHHHHSCTTCEEEESC
T ss_pred hhHHHHHHHHHhCCCceEEEECCCc---------hHHHHHHHHHhcCCEEEEEe
Confidence 00 13579999875331 24566678999999998743
|
| >3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* | Back alignment and structure |
|---|
Probab=94.04 E-value=0.36 Score=42.78 Aligned_cols=91 Identities=19% Similarity=0.207 Sum_probs=60.1
Q ss_pred CCCCEEEEECC-c-ccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC------CCCCCCE
Q 048309 68 SKEHEVLEIGC-G-WGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP------KAKKYDR 139 (288)
Q Consensus 68 ~~~~~vLDiGc-G-~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~------~~~~fD~ 139 (288)
.++.+||-+|+ | .|..+..+++..+++|+++. +++..+.+++ .|.. .++...-.++. .++.+|+
T Consensus 163 ~~g~~VlV~Ga~G~vG~~a~qla~~~Ga~Vi~~~-~~~~~~~~~~----lGa~---~vi~~~~~~~~~~v~~~t~g~~d~ 234 (371)
T 3gqv_A 163 SKPVYVLVYGGSTATATVTMQMLRLSGYIPIATC-SPHNFDLAKS----RGAE---EVFDYRAPNLAQTIRTYTKNNLRY 234 (371)
T ss_dssp SSCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEE-CGGGHHHHHH----TTCS---EEEETTSTTHHHHHHHHTTTCCCE
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEe-CHHHHHHHHH----cCCc---EEEECCCchHHHHHHHHccCCccE
Confidence 78899999998 3 69999999988788999885 7776665543 3431 33332222211 2345999
Q ss_pred EEEccchhhhCHhhHHHHHHHHhccc-ccCcEEEEE
Q 048309 140 IISCEMMEAVGHEYMEEYFGCCESLL-AKDGLLVLQ 174 (288)
Q Consensus 140 I~~~~~l~~~~~~~~~~~l~~~~~~L-kpgG~l~~~ 174 (288)
|+-.-.- ...++.+.+.| ++||+++..
T Consensus 235 v~d~~g~--------~~~~~~~~~~l~~~~G~iv~~ 262 (371)
T 3gqv_A 235 ALDCITN--------VESTTFCFAAIGRAGGHYVSL 262 (371)
T ss_dssp EEESSCS--------HHHHHHHHHHSCTTCEEEEES
T ss_pred EEECCCc--------hHHHHHHHHHhhcCCCEEEEE
Confidence 9864221 23455566778 699998874
|
| >4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda} | Back alignment and structure |
|---|
Probab=94.01 E-value=0.079 Score=46.62 Aligned_cols=72 Identities=17% Similarity=0.186 Sum_probs=55.1
Q ss_pred CEEEEECCcccHHHHHHHHccC---CEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC----CCCCCCEEEEc
Q 048309 71 HEVLEIGCGWGTFAIEVVRQTG---CNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP----KAKKYDRIISC 143 (288)
Q Consensus 71 ~~vLDiGcG~G~~~~~la~~~~---~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~----~~~~fD~I~~~ 143 (288)
.+++|+-||.|.+..-+.+. | ..|.++|+++.+.+.-+.++. ...++.+|+.++. +...+|+++..
T Consensus 4 ~~~idLFaG~GG~~~G~~~a-G~~~~~v~a~e~d~~a~~ty~~N~~------~~~~~~~DI~~~~~~~~~~~~~D~l~gg 76 (333)
T 4h0n_A 4 HKILELYSGIGGMHCAWKES-GLDGEIVAAVDINTVANSVYKHNFP------ETNLLNRNIQQLTPQVIKKWNVDTILMS 76 (333)
T ss_dssp EEEEEETCTTTHHHHHHHHH-TCSEEEEEEECCCHHHHHHHHHHCT------TSCEECCCGGGCCHHHHHHTTCCEEEEC
T ss_pred CEEEEECcCccHHHHHHHHc-CCCceEEEEEeCCHHHHHHHHHhCC------CCceeccccccCCHHHhccCCCCEEEec
Confidence 47999999999999888765 4 357899999998887776653 3457788998876 22379999987
Q ss_pred cchhhh
Q 048309 144 EMMEAV 149 (288)
Q Consensus 144 ~~l~~~ 149 (288)
..+..+
T Consensus 77 pPCQ~f 82 (333)
T 4h0n_A 77 PPCQPF 82 (333)
T ss_dssp CCCCCS
T ss_pred CCCcch
Confidence 765544
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=93.81 E-value=0.41 Score=35.79 Aligned_cols=67 Identities=15% Similarity=0.131 Sum_probs=45.5
Q ss_pred CCEEEEECCcc-cHH-HHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-----CCCCCCEEEE
Q 048309 70 EHEVLEIGCGW-GTF-AIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-----KAKKYDRIIS 142 (288)
Q Consensus 70 ~~~vLDiGcG~-G~~-~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-----~~~~fD~I~~ 142 (288)
..+|+-+|||. |.. +..|.+ .+.+|+++|.+++.++.+++ . .+.++.+|..+.. ....+|+|+.
T Consensus 6 ~~~v~I~G~G~iG~~la~~L~~-~g~~V~~id~~~~~~~~~~~----~----~~~~~~gd~~~~~~l~~~~~~~~d~vi~ 76 (141)
T 3llv_A 6 RYEYIVIGSEAAGVGLVRELTA-AGKKVLAVDKSKEKIELLED----E----GFDAVIADPTDESFYRSLDLEGVSAVLI 76 (141)
T ss_dssp CCSEEEECCSHHHHHHHHHHHH-TTCCEEEEESCHHHHHHHHH----T----TCEEEECCTTCHHHHHHSCCTTCSEEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHH-CCCeEEEEECCHHHHHHHHH----C----CCcEEECCCCCHHHHHhCCcccCCEEEE
Confidence 45788999975 433 333333 47899999999987766543 2 3578889887643 2357898887
Q ss_pred ccc
Q 048309 143 CEM 145 (288)
Q Consensus 143 ~~~ 145 (288)
...
T Consensus 77 ~~~ 79 (141)
T 3llv_A 77 TGS 79 (141)
T ss_dssp CCS
T ss_pred ecC
Confidence 543
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=93.76 E-value=0.58 Score=41.69 Aligned_cols=98 Identities=8% Similarity=0.100 Sum_probs=69.0
Q ss_pred CCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCC-ceEEEEcccCCCCCCCCCCEEEEccchh
Q 048309 69 KEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQD-HIRLYLCDYRQLPKAKKYDRIISCEMME 147 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~-~v~~~~~d~~~~~~~~~fD~I~~~~~l~ 147 (288)
.+.+||.++.+.|.++..++.. .++.+.-|--.....+.+++.++++. ++++... ..+ ..+.||+|+.... .
T Consensus 38 ~~~~~~~~~d~~gal~~~~~~~---~~~~~~ds~~~~~~~~~n~~~~~~~~~~~~~~~~-~~~--~~~~~~~v~~~lp-k 110 (375)
T 4dcm_A 38 IRGPVLILNDAFGALSCALAEH---KPYSIGDSYISELATRENLRLNGIDESSVKFLDS-TAD--YPQQPGVVLIKVP-K 110 (375)
T ss_dssp CCSCEEEECCSSSHHHHHTGGG---CCEEEESCHHHHHHHHHHHHHTTCCGGGSEEEET-TSC--CCSSCSEEEEECC-S
T ss_pred CCCCEEEECCCCCHHHHhhccC---CceEEEhHHHHHHHHHHHHHHcCCCccceEeccc-ccc--cccCCCEEEEEcC-C
Confidence 4568999999999999888753 34555436666677788888888853 2554322 222 3478999887543 2
Q ss_pred hhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 148 AVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 148 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
+. ......+..+...|++|+.+++..
T Consensus 111 ~~--~~l~~~L~~l~~~l~~~~~i~~~g 136 (375)
T 4dcm_A 111 TL--ALLEQQLRALRKVVTSDTRIIAGA 136 (375)
T ss_dssp CH--HHHHHHHHHHHTTCCTTSEEEEEE
T ss_pred CH--HHHHHHHHHHHhhCCCCCEEEEEe
Confidence 22 566778899999999999987743
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=93.70 E-value=0.037 Score=47.78 Aligned_cols=57 Identities=16% Similarity=0.177 Sum_probs=41.2
Q ss_pred CceEEEEcccCCC-C--CCCCCCEEEEccchhhhC--------------H----hhHHHHHHHHhcccccCcEEEEEe
Q 048309 119 DHIRLYLCDYRQL-P--KAKKYDRIISCEMMEAVG--------------H----EYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 119 ~~v~~~~~d~~~~-~--~~~~fD~I~~~~~l~~~~--------------~----~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
.+++++++|..+. . ++++||+|+++....... . ..+..+++++.++|+|||.+++..
T Consensus 20 ~~~~i~~gD~~~~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~ 97 (297)
T 2zig_A 20 GVHRLHVGDAREVLASFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVV 97 (297)
T ss_dssp -CEEEEESCHHHHHTTSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCCEEEECcHHHHHhhCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 3678999999873 3 467999999986653110 0 123567889999999999998854
|
| >1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A | Back alignment and structure |
|---|
Probab=93.63 E-value=0.65 Score=40.79 Aligned_cols=96 Identities=11% Similarity=0.122 Sum_probs=57.3
Q ss_pred HHcCCCCCCEEEEECC-c-ccHHHHHHHHccCCEEEEE-cCCHH---HHHHHHHHHHHcCCCCceEEEEc------ccCC
Q 048309 63 EKARVSKEHEVLEIGC-G-WGTFAIEVVRQTGCNYTGI-TLSAE---QMKYAEMKVNEAGLQDHIRLYLC------DYRQ 130 (288)
Q Consensus 63 ~~~~~~~~~~vLDiGc-G-~G~~~~~la~~~~~~v~gi-D~s~~---~~~~a~~~~~~~g~~~~v~~~~~------d~~~ 130 (288)
...++++|.+||-+|+ | .|..+..+++..+++++++ +.++. ..+.+ ++.|.. .++.. ++.+
T Consensus 161 ~~~~~~~g~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~----~~lGa~---~vi~~~~~~~~~~~~ 233 (357)
T 1zsy_A 161 DFEQLQPGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDRPDIQKLSDRL----KSLGAE---HVITEEELRRPEMKN 233 (357)
T ss_dssp HSSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEECCCSCHHHHHHHH----HHTTCS---EEEEHHHHHSGGGGG
T ss_pred HHhccCCCCEEEEeCCcCHHHHHHHHHHHHcCCEEEEEecCccchHHHHHHH----HhcCCc---EEEecCcchHHHHHH
Confidence 3457889999999996 4 5999999998867776554 44332 23333 344532 23321 1222
Q ss_pred CCCC-CCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 131 LPKA-KKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 131 ~~~~-~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
.... +.+|+|+-.-. .+. .....+.|+++|++++.
T Consensus 234 ~~~~~~~~Dvvid~~g-----~~~----~~~~~~~l~~~G~iv~~ 269 (357)
T 1zsy_A 234 FFKDMPQPRLALNCVG-----GKS----STELLRQLARGGTMVTY 269 (357)
T ss_dssp TTSSSCCCSEEEESSC-----HHH----HHHHHTTSCTTCEEEEC
T ss_pred HHhCCCCceEEEECCC-----cHH----HHHHHHhhCCCCEEEEE
Confidence 2211 25999886422 111 13467999999998874
|
| >3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A* | Back alignment and structure |
|---|
Probab=93.38 E-value=0.22 Score=43.33 Aligned_cols=71 Identities=15% Similarity=0.151 Sum_probs=54.5
Q ss_pred CEEEEECCcccHHHHHHHHccCCE-EEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC--CCCCCCEEEEccchh
Q 048309 71 HEVLEIGCGWGTFAIEVVRQTGCN-YTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP--KAKKYDRIISCEMME 147 (288)
Q Consensus 71 ~~vLDiGcG~G~~~~~la~~~~~~-v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~--~~~~fD~I~~~~~l~ 147 (288)
.+|+|+-||.|.++.-+-+. |.+ +.++|+++.+++.-+.+. .-.++.+|+.++. .-...|+++....+.
T Consensus 1 mkvidLFsG~GG~~~G~~~a-G~~~v~a~e~d~~a~~ty~~N~-------~~~~~~~DI~~i~~~~~~~~D~l~ggpPCQ 72 (331)
T 3ubt_Y 1 MNLISLFSGAGGLDLGFQKA-GFRIICANEYDKSIWKTYESNH-------SAKLIKGDISKISSDEFPKCDGIIGGPPSQ 72 (331)
T ss_dssp CEEEEESCTTCHHHHHHHHT-TCEEEEEEECCTTTHHHHHHHC-------CSEEEESCGGGCCGGGSCCCSEEECCCCGG
T ss_pred CeEEEeCcCccHHHHHHHHC-CCEEEEEEeCCHHHHHHHHHHC-------CCCcccCChhhCCHhhCCcccEEEecCCCC
Confidence 37999999999999888765 544 669999998877766653 2367899999886 335799999877665
Q ss_pred hh
Q 048309 148 AV 149 (288)
Q Consensus 148 ~~ 149 (288)
.+
T Consensus 73 ~f 74 (331)
T 3ubt_Y 73 SW 74 (331)
T ss_dssp GT
T ss_pred Cc
Confidence 54
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=93.23 E-value=0.29 Score=44.29 Aligned_cols=93 Identities=11% Similarity=0.122 Sum_probs=62.9
Q ss_pred CCEEEEECCcc-cHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-----CCCCCCEEEEc
Q 048309 70 EHEVLEIGCGW-GTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-----KAKKYDRIISC 143 (288)
Q Consensus 70 ~~~vLDiGcG~-G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-----~~~~fD~I~~~ 143 (288)
..+|+-+|+|. |..........+..|++||.+++.++.+++ .| +.++.+|..+.. .-..+|+|++.
T Consensus 4 ~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~----~g----~~vi~GDat~~~~L~~agi~~A~~viv~ 75 (413)
T 3l9w_A 4 GMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRK----FG----MKVFYGDATRMDLLESAGAAKAEVLINA 75 (413)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHH----TT----CCCEESCTTCHHHHHHTTTTTCSEEEEC
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHh----CC----CeEEEcCCCCHHHHHhcCCCccCEEEEC
Confidence 45788899875 544433333357899999999999887753 23 578999998753 24678988875
Q ss_pred cchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 144 EMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 144 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
.. .......+....+.+.|...+++..
T Consensus 76 ~~-----~~~~n~~i~~~ar~~~p~~~Iiara 102 (413)
T 3l9w_A 76 ID-----DPQTNLQLTEMVKEHFPHLQIIARA 102 (413)
T ss_dssp CS-----SHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred CC-----ChHHHHHHHHHHHHhCCCCeEEEEE
Confidence 32 1233445555667778888777743
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=93.16 E-value=1.5 Score=32.16 Aligned_cols=90 Identities=12% Similarity=0.057 Sum_probs=52.2
Q ss_pred CCEEEEECCcc-cHHH-HHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-----CCCCCCEEEE
Q 048309 70 EHEVLEIGCGW-GTFA-IEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-----KAKKYDRIIS 142 (288)
Q Consensus 70 ~~~vLDiGcG~-G~~~-~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-----~~~~fD~I~~ 142 (288)
+.+|+=+|+|. |... ..+.+ .+.+|+++|.+++.++..++. . .+.++.+|..+.. ....+|+|+.
T Consensus 4 ~m~i~IiG~G~iG~~~a~~L~~-~g~~v~~~d~~~~~~~~~~~~---~----~~~~~~~d~~~~~~l~~~~~~~~d~vi~ 75 (140)
T 1lss_A 4 GMYIIIAGIGRVGYTLAKSLSE-KGHDIVLIDIDKDICKKASAE---I----DALVINGDCTKIKTLEDAGIEDADMYIA 75 (140)
T ss_dssp -CEEEEECCSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHH---C----SSEEEESCTTSHHHHHHTTTTTCSEEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHh-CCCeEEEEECCHHHHHHHHHh---c----CcEEEEcCCCCHHHHHHcCcccCCEEEE
Confidence 45788899865 4332 33333 478999999998876544322 1 2466777765432 1357899887
Q ss_pred ccchhhhCHhhHHHHHHHHhcccccCcEEEE
Q 048309 143 CEMMEAVGHEYMEEYFGCCESLLAKDGLLVL 173 (288)
Q Consensus 143 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~ 173 (288)
.-.-. .....+..+.+.+.++ .+++
T Consensus 76 ~~~~~-----~~~~~~~~~~~~~~~~-~ii~ 100 (140)
T 1lss_A 76 VTGKE-----EVNLMSSLLAKSYGIN-KTIA 100 (140)
T ss_dssp CCSCH-----HHHHHHHHHHHHTTCC-CEEE
T ss_pred eeCCc-----hHHHHHHHHHHHcCCC-EEEE
Confidence 64322 2223444445556765 4444
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=92.83 E-value=0.071 Score=47.40 Aligned_cols=99 Identities=15% Similarity=0.178 Sum_probs=59.4
Q ss_pred CCCEEEEECCcc-cHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CCCCCCEEEEccch
Q 048309 69 KEHEVLEIGCGW-GTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAKKYDRIISCEMM 146 (288)
Q Consensus 69 ~~~~vLDiGcG~-G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~~fD~I~~~~~l 146 (288)
++.+|+=+|+|. |..+..+++..|++|+++|.+++..+.+++.... .+.....+..++. .-..+|+|+..-..
T Consensus 166 ~~~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~DvVI~~~~~ 240 (361)
T 1pjc_A 166 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGS-----RVELLYSNSAEIETAVAEADLLIGAVLV 240 (361)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGG-----GSEEEECCHHHHHHHHHTCSEEEECCCC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhhCc-----eeEeeeCCHHHHHHHHcCCCEEEECCCc
Confidence 347999999875 6666676666677999999999888777655422 2222222211221 11368999875443
Q ss_pred hhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 147 EAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 147 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
... ..+.-+.+...+.++|||+++..
T Consensus 241 ~~~--~~~~li~~~~~~~~~~g~~ivdv 266 (361)
T 1pjc_A 241 PGR--RAPILVPASLVEQMRTGSVIVDV 266 (361)
T ss_dssp TTS--SCCCCBCHHHHTTSCTTCEEEET
T ss_pred CCC--CCCeecCHHHHhhCCCCCEEEEE
Confidence 221 00000123345788999977753
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=92.71 E-value=0.079 Score=47.23 Aligned_cols=99 Identities=15% Similarity=0.175 Sum_probs=57.5
Q ss_pred CCCEEEEECCcc-cHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CCCCCCEEEEccch
Q 048309 69 KEHEVLEIGCGW-GTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAKKYDRIISCEMM 146 (288)
Q Consensus 69 ~~~~vLDiGcG~-G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~~fD~I~~~~~l 146 (288)
++.+|+=+|+|. |..+...+...|++|+++|.+++..+.+.+.. +. .+.....+..++. .-..+|+|+..-..
T Consensus 165 ~~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~~---g~--~~~~~~~~~~~l~~~~~~~DvVi~~~g~ 239 (369)
T 2eez_A 165 APASVVILGGGTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDVF---GG--RVITLTATEANIKKSVQHADLLIGAVLV 239 (369)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHT---TT--SEEEEECCHHHHHHHHHHCSEEEECCC-
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhc---Cc--eEEEecCCHHHHHHHHhCCCEEEECCCC
Confidence 467999999874 66666666557889999999998776665432 32 2322222222222 11368999876443
Q ss_pred hhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 147 EAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 147 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
... ....-+.+...+.+++||+++..
T Consensus 240 ~~~--~~~~li~~~~l~~mk~gg~iV~v 265 (369)
T 2eez_A 240 PGA--KAPKLVTRDMLSLMKEGAVIVDV 265 (369)
T ss_dssp --------CCSCHHHHTTSCTTCEEEEC
T ss_pred Ccc--ccchhHHHHHHHhhcCCCEEEEE
Confidence 220 01111245566888999987753
|
| >3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=92.68 E-value=0.18 Score=44.28 Aligned_cols=98 Identities=9% Similarity=0.070 Sum_probs=61.6
Q ss_pred HHHHcCCCCC-CEEEEE-CCc-ccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-----
Q 048309 61 LIEKARVSKE-HEVLEI-GCG-WGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP----- 132 (288)
Q Consensus 61 l~~~~~~~~~-~~vLDi-GcG-~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~----- 132 (288)
+++... .++ .+||=. |+| .|..+..+++..+++|++++.+++..+.+++. |. -.++..+-.++.
T Consensus 156 ~~~~~~-~~g~~~vli~gg~g~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~~----Ga---~~~~~~~~~~~~~~v~~ 227 (349)
T 3pi7_A 156 MFDIVK-QEGEKAFVMTAGASQLCKLIIGLAKEEGFRPIVTVRRDEQIALLKDI----GA---AHVLNEKAPDFEATLRE 227 (349)
T ss_dssp HHHHHH-HHCCSEEEESSTTSHHHHHHHHHHHHHTCEEEEEESCGGGHHHHHHH----TC---SEEEETTSTTHHHHHHH
T ss_pred HHHHHh-hCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc----CC---CEEEECCcHHHHHHHHH
Confidence 344444 345 567644 555 48888888888788999999999888877643 42 123322222211
Q ss_pred --CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 133 --KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 133 --~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
....+|+|+-...-. .+..+.+.|+++|++++..
T Consensus 228 ~~~~~g~D~vid~~g~~---------~~~~~~~~l~~~G~iv~~G 263 (349)
T 3pi7_A 228 VMKAEQPRIFLDAVTGP---------LASAIFNAMPKRARWIIYG 263 (349)
T ss_dssp HHHHHCCCEEEESSCHH---------HHHHHHHHSCTTCEEEECC
T ss_pred HhcCCCCcEEEECCCCh---------hHHHHHhhhcCCCEEEEEe
Confidence 124799998753321 2355678999999998743
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=92.65 E-value=0.046 Score=48.93 Aligned_cols=99 Identities=15% Similarity=0.184 Sum_probs=58.4
Q ss_pred CCCEEEEECCcc-cHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CCCCCCEEEEccch
Q 048309 69 KEHEVLEIGCGW-GTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAKKYDRIISCEMM 146 (288)
Q Consensus 69 ~~~~vLDiGcG~-G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~~fD~I~~~~~l 146 (288)
++.+|+=+|+|. |..+...++..|.+|+++|.+++.++.+++.. |. .+.....+..++. .-..+|+|+..-..
T Consensus 167 ~g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~~~---g~--~~~~~~~~~~~l~~~l~~aDvVi~~~~~ 241 (377)
T 2vhw_A 167 EPADVVVIGAGTAGYNAARIANGMGATVTVLDINIDKLRQLDAEF---CG--RIHTRYSSAYELEGAVKRADLVIGAVLV 241 (377)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHT---TT--SSEEEECCHHHHHHHHHHCSEEEECCCC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhc---CC--eeEeccCCHHHHHHHHcCCCEEEECCCc
Confidence 578999999975 66666666667789999999998877665432 22 1222211111121 11368999874322
Q ss_pred hhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 147 EAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 147 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
... +...-+.++..+.++|||+++..
T Consensus 242 p~~--~t~~li~~~~l~~mk~g~~iV~v 267 (377)
T 2vhw_A 242 PGA--KAPKLVSNSLVAHMKPGAVLVDI 267 (377)
T ss_dssp TTS--CCCCCBCHHHHTTSCTTCEEEEG
T ss_pred CCC--CCcceecHHHHhcCCCCcEEEEE
Confidence 210 00011234455788999987753
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=92.63 E-value=0.82 Score=39.62 Aligned_cols=88 Identities=20% Similarity=0.261 Sum_probs=57.0
Q ss_pred CCEEEEECCcc-c-HHHHHHHHccCC--EEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCC-CCCCCCCCEEEEcc
Q 048309 70 EHEVLEIGCGW-G-TFAIEVVRQTGC--NYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQ-LPKAKKYDRIISCE 144 (288)
Q Consensus 70 ~~~vLDiGcG~-G-~~~~~la~~~~~--~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~-~~~~~~fD~I~~~~ 144 (288)
..+|.=||+|. | .++..+.+. +. +|+++|.+++.++.+.+ .|. +.-...|..+ . -...|+|+..-
T Consensus 33 ~~kI~IIG~G~mG~slA~~l~~~-G~~~~V~~~dr~~~~~~~a~~----~G~---~~~~~~~~~~~~--~~~aDvVilav 102 (314)
T 3ggo_A 33 MQNVLIVGVGFMGGSFAKSLRRS-GFKGKIYGYDINPESISKAVD----LGI---IDEGTTSIAKVE--DFSPDFVMLSS 102 (314)
T ss_dssp CSEEEEESCSHHHHHHHHHHHHT-TCCSEEEEECSCHHHHHHHHH----TTS---CSEEESCTTGGG--GGCCSEEEECS
T ss_pred CCEEEEEeeCHHHHHHHHHHHhC-CCCCEEEEEECCHHHHHHHHH----CCC---cchhcCCHHHHh--hccCCEEEEeC
Confidence 36899999986 4 445555554 66 99999999987766543 343 1112233333 2 24689998754
Q ss_pred chhhhCHhhHHHHHHHHhcccccCcEEE
Q 048309 145 MMEAVGHEYMEEYFGCCESLLAKDGLLV 172 (288)
Q Consensus 145 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~ 172 (288)
.. ....++++++...+++|..++
T Consensus 103 p~-----~~~~~vl~~l~~~l~~~~iv~ 125 (314)
T 3ggo_A 103 PV-----RTFREIAKKLSYILSEDATVT 125 (314)
T ss_dssp CG-----GGHHHHHHHHHHHSCTTCEEE
T ss_pred CH-----HHHHHHHHHHhhccCCCcEEE
Confidence 33 345677888888898887554
|
| >1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A | Back alignment and structure |
|---|
Probab=92.36 E-value=0.11 Score=46.03 Aligned_cols=98 Identities=12% Similarity=0.173 Sum_probs=58.3
Q ss_pred cCCCCC-CEEEEECC-c-ccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEccc---CCCC------
Q 048309 65 ARVSKE-HEVLEIGC-G-WGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDY---RQLP------ 132 (288)
Q Consensus 65 ~~~~~~-~~vLDiGc-G-~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~---~~~~------ 132 (288)
.+++++ .+||-+|+ | .|..+.++++..+++++++..+++..+..++.+++.|.. .++..+- .++.
T Consensus 162 ~~~~~g~~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~~~lGa~---~vi~~~~~~~~~~~~~i~~~ 238 (364)
T 1gu7_A 162 VKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGAT---QVITEDQNNSREFGPTIKEW 238 (364)
T ss_dssp SCCCTTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCS---EEEEHHHHHCGGGHHHHHHH
T ss_pred hccCCCCcEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCccccHHHHHHHHhcCCe---EEEecCccchHHHHHHHHHH
Confidence 467889 99999996 4 589999999887888888865443311111222334532 2232211 1111
Q ss_pred ---CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 133 ---KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 133 ---~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
....+|+|+-.-.- .... .+.+.|+++|+++..
T Consensus 239 t~~~~~g~Dvvid~~G~--------~~~~-~~~~~l~~~G~~v~~ 274 (364)
T 1gu7_A 239 IKQSGGEAKLALNCVGG--------KSST-GIARKLNNNGLMLTY 274 (364)
T ss_dssp HHHHTCCEEEEEESSCH--------HHHH-HHHHTSCTTCEEEEC
T ss_pred hhccCCCceEEEECCCc--------hhHH-HHHHHhccCCEEEEe
Confidence 13479999864321 1122 556899999998874
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=92.31 E-value=1.1 Score=34.03 Aligned_cols=92 Identities=17% Similarity=0.178 Sum_probs=55.8
Q ss_pred CCEEEEECCcccHHHHHHHHc---cCCEEEEEcCC-HHHHHHHHHHHHHcCCCCceEEEEcccCCCC-----CCCCCCEE
Q 048309 70 EHEVLEIGCGWGTFAIEVVRQ---TGCNYTGITLS-AEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-----KAKKYDRI 140 (288)
Q Consensus 70 ~~~vLDiGcG~G~~~~~la~~---~~~~v~giD~s-~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-----~~~~fD~I 140 (288)
..+|+=+|+|. .+..+++. .+.+|+++|.+ ++..+...+... ..+.++.+|..+.. .-..+|+|
T Consensus 3 ~~~vlI~G~G~--vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~-----~~~~~i~gd~~~~~~l~~a~i~~ad~v 75 (153)
T 1id1_A 3 KDHFIVCGHSI--LAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLG-----DNADVIPGDSNDSSVLKKAGIDRCRAI 75 (153)
T ss_dssp CSCEEEECCSH--HHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHC-----TTCEEEESCTTSHHHHHHHTTTTCSEE
T ss_pred CCcEEEECCCH--HHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhc-----CCCeEEEcCCCCHHHHHHcChhhCCEE
Confidence 35788888753 33333332 47899999997 454443333221 24789999987642 24678998
Q ss_pred EEccchhhhCHhhHHHHHHHHhcccccCcEEEE
Q 048309 141 ISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVL 173 (288)
Q Consensus 141 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~ 173 (288)
++...- ......+....+.+.|...++.
T Consensus 76 i~~~~~-----d~~n~~~~~~a~~~~~~~~ii~ 103 (153)
T 1id1_A 76 LALSDN-----DADNAFVVLSAKDMSSDVKTVL 103 (153)
T ss_dssp EECSSC-----HHHHHHHHHHHHHHTSSSCEEE
T ss_pred EEecCC-----hHHHHHHHHHHHHHCCCCEEEE
Confidence 876322 2234455555566667777766
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=91.98 E-value=1.9 Score=35.98 Aligned_cols=67 Identities=15% Similarity=0.167 Sum_probs=48.7
Q ss_pred CEEEEECCcccHHHHHHHHc---cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCEEEEccchh
Q 048309 71 HEVLEIGCGWGTFAIEVVRQ---TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMME 147 (288)
Q Consensus 71 ~~vLDiGcG~G~~~~~la~~---~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~~~~~l~ 147 (288)
++||=.|+ |.++..+++. .+.+|++++-++....... . .+++++.+|+.++. ...+|+|+......
T Consensus 6 ~~ilVtGa--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~----~----~~~~~~~~D~~d~~-~~~~d~vi~~a~~~ 74 (286)
T 3ius_A 6 GTLLSFGH--GYTARVLSRALAPQGWRIIGTSRNPDQMEAIR----A----SGAEPLLWPGEEPS-LDGVTHLLISTAPD 74 (286)
T ss_dssp CEEEEETC--CHHHHHHHHHHGGGTCEEEEEESCGGGHHHHH----H----TTEEEEESSSSCCC-CTTCCEEEECCCCB
T ss_pred CcEEEECC--cHHHHHHHHHHHHCCCEEEEEEcChhhhhhHh----h----CCCeEEEecccccc-cCCCCEEEECCCcc
Confidence 58999995 6666666554 5789999998876543322 2 25899999999876 57899999876544
Q ss_pred h
Q 048309 148 A 148 (288)
Q Consensus 148 ~ 148 (288)
.
T Consensus 75 ~ 75 (286)
T 3ius_A 75 S 75 (286)
T ss_dssp T
T ss_pred c
Confidence 3
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=91.96 E-value=1.5 Score=36.75 Aligned_cols=103 Identities=14% Similarity=0.214 Sum_probs=67.4
Q ss_pred CCCEEEEECCcccH---HHHHHHHccCCEEEEEcCC------------HHHHHHHHHHHHHcCCCCceEEEEcccCCCC-
Q 048309 69 KEHEVLEIGCGWGT---FAIEVVRQTGCNYTGITLS------------AEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP- 132 (288)
Q Consensus 69 ~~~~vLDiGcG~G~---~~~~la~~~~~~v~giD~s------------~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~- 132 (288)
.++++|=.|++.|. .+..|++ .+++|+.+|.+ ...++.+...++..+ .++.++..|+.+..
T Consensus 9 ~gk~vlVTGas~gIG~~ia~~l~~-~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~ 85 (287)
T 3pxx_A 9 QDKVVLVTGGARGQGRSHAVKLAE-EGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTG--RKAYTAEVDVRDRAA 85 (287)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTT--SCEEEEECCTTCHHH
T ss_pred CCCEEEEeCCCChHHHHHHHHHHH-CCCeEEEEcccccccccccchhhhHHHHHHHHHHHhcC--CceEEEEccCCCHHH
Confidence 46788888876542 3444555 48899999987 666666666666554 47899999998743
Q ss_pred ----------CCCCCCEEEEccchhh----hCHhhHHH-----------HHHHHhcccccCcEEEEE
Q 048309 133 ----------KAKKYDRIISCEMMEA----VGHEYMEE-----------YFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 133 ----------~~~~fD~I~~~~~l~~----~~~~~~~~-----------~l~~~~~~LkpgG~l~~~ 174 (288)
.-+..|+++.+..+.. .+.++... +.+.+...++.+|.++..
T Consensus 86 v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~i 152 (287)
T 3pxx_A 86 VSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITT 152 (287)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEE
T ss_pred HHHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEe
Confidence 1147999998755422 22233322 345666777788887764
|
| >3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* | Back alignment and structure |
|---|
Probab=91.94 E-value=0.54 Score=43.50 Aligned_cols=89 Identities=13% Similarity=0.109 Sum_probs=58.0
Q ss_pred CCCCCEEEEECCcc-cHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCEEEEccc
Q 048309 67 VSKEHEVLEIGCGW-GTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEM 145 (288)
Q Consensus 67 ~~~~~~vLDiGcG~-G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~~~~~ 145 (288)
..+|++|+-+|+|. |......++..+.+|+++|.++...+.+++ .|. ++ .++.+. -..+|+|+..-.
T Consensus 271 ~l~GktV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~~~~~~A~~----~Ga----~~--~~l~e~--l~~aDvVi~atg 338 (494)
T 3ce6_A 271 LIGGKKVLICGYGDVGKGCAEAMKGQGARVSVTEIDPINALQAMM----EGF----DV--VTVEEA--IGDADIVVTATG 338 (494)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH----TTC----EE--CCHHHH--GGGCSEEEECSS
T ss_pred CCCcCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----cCC----EE--ecHHHH--HhCCCEEEECCC
Confidence 56789999999986 777666666678899999999987665543 343 22 222221 246899987643
Q ss_pred hhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 146 MEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 146 l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
-.++ - -.+..+.||+||+++..
T Consensus 339 t~~~--i-----~~~~l~~mk~ggilvnv 360 (494)
T 3ce6_A 339 NKDI--I-----MLEHIKAMKDHAILGNI 360 (494)
T ss_dssp SSCS--B-----CHHHHHHSCTTCEEEEC
T ss_pred CHHH--H-----HHHHHHhcCCCcEEEEe
Confidence 2222 0 12344668999988763
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=91.72 E-value=1.3 Score=36.85 Aligned_cols=106 Identities=9% Similarity=0.099 Sum_probs=68.7
Q ss_pred CCCEEEEECCc----ccH-HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-----------
Q 048309 69 KEHEVLEIGCG----WGT-FAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP----------- 132 (288)
Q Consensus 69 ~~~~vLDiGcG----~G~-~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~----------- 132 (288)
.++++|=.|++ .|. ++..++++ +++|+.++.++...+.+.+..+..+- .++.++.+|+.+..
T Consensus 6 ~~k~vlVTGasg~~GIG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~v~~~~~~~~~ 83 (266)
T 3oig_A 6 EGRNIVVMGVANKRSIAWGIARSLHEA-GARLIFTYAGERLEKSVHELAGTLDR-NDSIILPCDVTNDAEIETCFASIKE 83 (266)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHHHHHTSSS-CCCEEEECCCSSSHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCcHHHHHHHHHHHC-CCEEEEecCchHHHHHHHHHHHhcCC-CCceEEeCCCCCHHHHHHHHHHHHH
Confidence 46789989865 333 45555654 88999999887666666665555442 26899999998754
Q ss_pred CCCCCCEEEEccchhh----------hCHhhHH-----------HHHHHHhcccccCcEEEEEee
Q 048309 133 KAKKYDRIISCEMMEA----------VGHEYME-----------EYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 133 ~~~~fD~I~~~~~l~~----------~~~~~~~-----------~~l~~~~~~LkpgG~l~~~~~ 176 (288)
.-+..|+++.+..+.. .+.++.. .+.+.+...++++|.++....
T Consensus 84 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS 148 (266)
T 3oig_A 84 QVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLTY 148 (266)
T ss_dssp HHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEEC
T ss_pred HhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEec
Confidence 0147899988654322 2223332 245566778888888877543
|
| >4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A* | Back alignment and structure |
|---|
Probab=91.64 E-value=0.9 Score=41.22 Aligned_cols=45 Identities=22% Similarity=0.299 Sum_probs=35.9
Q ss_pred CCEEEEECCcccHHHHHHHHc------cCCEEEEEcCCHHHHHHHHHHHHH
Q 048309 70 EHEVLEIGCGWGTFAIEVVRQ------TGCNYTGITLSAEQMKYAEMKVNE 114 (288)
Q Consensus 70 ~~~vLDiGcG~G~~~~~la~~------~~~~v~giD~s~~~~~~a~~~~~~ 114 (288)
..+|+|+|.|+|.++..+.+. ...+++.||+|+...+.-++++..
T Consensus 138 ~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~ 188 (432)
T 4f3n_A 138 TRRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGELRARQRETLGA 188 (432)
T ss_dssp CCEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSSSHHHHHHHHHH
T ss_pred CCeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHHHHHHHHHHHhc
Confidence 469999999999998887653 134899999999988777777654
|
| >3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=91.52 E-value=0.46 Score=36.71 Aligned_cols=112 Identities=16% Similarity=0.074 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCC
Q 048309 53 AQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQL 131 (288)
Q Consensus 53 a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~ 131 (288)
+|+..+.+.++.....+| -|||+|-|+|..--++.+. ++.+|+.+|-.-.. -....|+.-.++.+|+.+.
T Consensus 25 aQR~~L~~a~~~v~~~~G-pVlElGLGNGRTydHLRe~~P~R~I~vfDR~~~~--------hp~~~P~~e~~ilGdi~~t 95 (174)
T 3iht_A 25 SQRACLEHAIAQTAGLSG-PVYELGLGNGRTYHHLRQHVQGREIYVFERAVAS--------HPDSTPPEAQLILGDIRET 95 (174)
T ss_dssp HHHHHHHHHHHHTTTCCS-CEEEECCTTCHHHHHHHHHCCSSCEEEEESSCCC--------CGGGCCCGGGEEESCHHHH
T ss_pred HHHHHHHHHHHHhcCCCC-ceEEecCCCChhHHHHHHhCCCCcEEEEEeeecc--------CCCCCCchHheecccHHHH
Confidence 778888888888876555 7999999999999999888 88899999942210 0112234456778887663
Q ss_pred C------CCCCCCEEEEccchhhhCH--hhHHHHHHHHhcccccCcEEEE
Q 048309 132 P------KAKKYDRIISCEMMEAVGH--EYMEEYFGCCESLLAKDGLLVL 173 (288)
Q Consensus 132 ~------~~~~fD~I~~~~~l~~~~~--~~~~~~l~~~~~~LkpgG~l~~ 173 (288)
- ...+.-++.+....+.-.. ....-+-.-+..+|.|||.++.
T Consensus 96 L~~~~~r~g~~a~LaHaD~G~g~~~~d~a~a~~lsplI~~~la~GGi~vS 145 (174)
T 3iht_A 96 LPATLERFGATASLVHADLGGHNREKNDRFARLISPLIEPHLAQGGLMVS 145 (174)
T ss_dssp HHHHHHHHCSCEEEEEECCCCSCHHHHHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred HHHHHHhcCCceEEEEeecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEe
Confidence 2 1334444444333222110 0111122345688999998876
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=91.45 E-value=0.29 Score=37.44 Aligned_cols=94 Identities=11% Similarity=0.135 Sum_probs=53.9
Q ss_pred CCCCEEEEECCcc-cHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-----CCCCCCEEE
Q 048309 68 SKEHEVLEIGCGW-GTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-----KAKKYDRII 141 (288)
Q Consensus 68 ~~~~~vLDiGcG~-G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-----~~~~fD~I~ 141 (288)
.++.+|+=+|||. |......+...+.+|+++|.+++.++.++. .. .+.++.+|..+.. ....+|+|+
T Consensus 17 ~~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~---~~----g~~~~~~d~~~~~~l~~~~~~~ad~Vi 89 (155)
T 2g1u_A 17 QKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYAFHRLNS---EF----SGFTVVGDAAEFETLKECGMEKADMVF 89 (155)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCT---TC----CSEEEESCTTSHHHHHTTTGGGCSEEE
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHh---cC----CCcEEEecCCCHHHHHHcCcccCCEEE
Confidence 3567999999975 554444433357899999998865543321 11 3456667764421 124689988
Q ss_pred EccchhhhCHhhHHHHHHHHhcccccCcEEEE
Q 048309 142 SCEMMEAVGHEYMEEYFGCCESLLAKDGLLVL 173 (288)
Q Consensus 142 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~ 173 (288)
..-.- ......+..+.+.+.+...++.
T Consensus 90 ~~~~~-----~~~~~~~~~~~~~~~~~~~iv~ 116 (155)
T 2g1u_A 90 AFTND-----DSTNFFISMNARYMFNVENVIA 116 (155)
T ss_dssp ECSSC-----HHHHHHHHHHHHHTSCCSEEEE
T ss_pred EEeCC-----cHHHHHHHHHHHHHCCCCeEEE
Confidence 75332 2223333344444555555555
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=91.38 E-value=1.6 Score=35.28 Aligned_cols=88 Identities=15% Similarity=0.002 Sum_probs=55.1
Q ss_pred EEEEECCcccHHHHHHHHc---cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-----CCCCCCEEEEc
Q 048309 72 EVLEIGCGWGTFAIEVVRQ---TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-----KAKKYDRIISC 143 (288)
Q Consensus 72 ~vLDiGcG~G~~~~~la~~---~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-----~~~~fD~I~~~ 143 (288)
+|+=+|+| .++..+++. .+.+|+++|.+++.++...+. . .+.++.+|..+.. .-..+|+|++.
T Consensus 2 ~iiIiG~G--~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~---~----~~~~i~gd~~~~~~l~~a~i~~ad~vi~~ 72 (218)
T 3l4b_C 2 KVIIIGGE--TTAYYLARSMLSRKYGVVIINKDRELCEEFAKK---L----KATIIHGDGSHKEILRDAEVSKNDVVVIL 72 (218)
T ss_dssp CEEEECCH--HHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHH---S----SSEEEESCTTSHHHHHHHTCCTTCEEEEC
T ss_pred EEEEECCC--HHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHH---c----CCeEEEcCCCCHHHHHhcCcccCCEEEEe
Confidence 46777875 444444332 578999999999877654332 2 3678999988743 24679999875
Q ss_pred cchhhhCHhhHHHHHHHHhcccccCcEEEE
Q 048309 144 EMMEAVGHEYMEEYFGCCESLLAKDGLLVL 173 (288)
Q Consensus 144 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~ 173 (288)
..- ......+....+.+.+...++.
T Consensus 73 ~~~-----d~~n~~~~~~a~~~~~~~~iia 97 (218)
T 3l4b_C 73 TPR-----DEVNLFIAQLVMKDFGVKRVVS 97 (218)
T ss_dssp CSC-----HHHHHHHHHHHHHTSCCCEEEE
T ss_pred cCC-----cHHHHHHHHHHHHHcCCCeEEE
Confidence 322 2234445555555566666665
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=91.37 E-value=0.13 Score=45.01 Aligned_cols=58 Identities=14% Similarity=0.271 Sum_probs=42.8
Q ss_pred CceEEEEcccCC-CC--CCCCCCEEEEccchhhhC------------HhhHHHHHHHHhcccccCcEEEEEee
Q 048309 119 DHIRLYLCDYRQ-LP--KAKKYDRIISCEMMEAVG------------HEYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 119 ~~v~~~~~d~~~-~~--~~~~fD~I~~~~~l~~~~------------~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
.+..++++|..+ +. +++++|+|++........ ...+...++++.++|+|||.+++...
T Consensus 13 ~~~~ii~gD~~~~l~~l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~ 85 (323)
T 1boo_A 13 SNGSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFG 85 (323)
T ss_dssp SSEEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CCceEEeCcHHHHHhhCCCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEEC
Confidence 357899999865 33 467999999986653210 03467889999999999999998643
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=91.11 E-value=0.18 Score=48.55 Aligned_cols=105 Identities=15% Similarity=0.167 Sum_probs=66.0
Q ss_pred CCCEEEEECCcccHHHHHHHHc--------c-----CCEEEEEcC---CHHHHHHHHH-----------HHHHcCC--C-
Q 048309 69 KEHEVLEIGCGWGTFAIEVVRQ--------T-----GCNYTGITL---SAEQMKYAEM-----------KVNEAGL--Q- 118 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~~la~~--------~-----~~~v~giD~---s~~~~~~a~~-----------~~~~~g~--~- 118 (288)
+.-+|+|+|.|+|.+.....+. + ..+++++|. +++.++.+-. ..+.... +
T Consensus 66 ~~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (676)
T 3ps9_A 66 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 145 (676)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSE
T ss_pred CceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCC
Confidence 4458999999999987665432 0 135899998 7777763322 2222110 0
Q ss_pred ----------CceEEEEcccCCC-C-C----CCCCCEEEEccchhhhCHhh-HHHHHHHHhcccccCcEEEE
Q 048309 119 ----------DHIRLYLCDYRQL-P-K----AKKYDRIISCEMMEAVGHEY-MEEYFGCCESLLAKDGLLVL 173 (288)
Q Consensus 119 ----------~~v~~~~~d~~~~-~-~----~~~fD~I~~~~~l~~~~~~~-~~~~l~~~~~~LkpgG~l~~ 173 (288)
-.+++..+|+.+. + . ...||+++....-....++- -.++++.+.++++|||.+..
T Consensus 146 ~~~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t 217 (676)
T 3ps9_A 146 CHRLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLAT 217 (676)
T ss_dssp EEEEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECCSCGGGCGGGSCHHHHHHHHHHEEEEEEEEE
T ss_pred ceEEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECCCCCcCChhhhhHHHHHHHHHHhCCCCEEEe
Confidence 1245667777552 2 1 46799999875332222111 26788999999999998764
|
| >4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.97 E-value=0.36 Score=42.33 Aligned_cols=96 Identities=20% Similarity=0.196 Sum_probs=58.8
Q ss_pred HHHHcCCCCCCEEEEECC-c-ccHHHHHHHHcc-CCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-----
Q 048309 61 LIEKARVSKEHEVLEIGC-G-WGTFAIEVVRQT-GCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP----- 132 (288)
Q Consensus 61 l~~~~~~~~~~~vLDiGc-G-~G~~~~~la~~~-~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~----- 132 (288)
+.+..+++++.+||=.|+ | .|..+..+++.. +..|++++ +++..+.++ .|.. .++. +-.++.
T Consensus 134 l~~~~~~~~g~~VlV~Ga~G~vG~~a~qla~~~g~~~V~~~~-~~~~~~~~~-----~ga~---~~~~-~~~~~~~~~~~ 203 (349)
T 4a27_A 134 LFEVANLREGMSVLVHSAGGGVGQAVAQLCSTVPNVTVFGTA-STFKHEAIK-----DSVT---HLFD-RNADYVQEVKR 203 (349)
T ss_dssp HHTTSCCCTTCEEEESSTTSHHHHHHHHHHTTSTTCEEEEEE-CGGGHHHHG-----GGSS---EEEE-TTSCHHHHHHH
T ss_pred HHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCcEEEEeC-CHHHHHHHH-----cCCc---EEEc-CCccHHHHHHH
Confidence 345567889999999998 4 488888998873 57899988 554444433 3331 2332 212211
Q ss_pred -CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 133 -KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 133 -~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
..+.+|+|+-.-.- ..+..+.+.|+++|++++..
T Consensus 204 ~~~~g~Dvv~d~~g~---------~~~~~~~~~l~~~G~~v~~G 238 (349)
T 4a27_A 204 ISAEGVDIVLDCLCG---------DNTGKGLSLLKPLGTYILYG 238 (349)
T ss_dssp HCTTCEEEEEEECC----------------CTTEEEEEEEEEEC
T ss_pred hcCCCceEEEECCCc---------hhHHHHHHHhhcCCEEEEEC
Confidence 23579999864221 11356779999999998754
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=90.95 E-value=3.7 Score=34.81 Aligned_cols=105 Identities=16% Similarity=0.099 Sum_probs=67.6
Q ss_pred CCCCEEEEECCc----ccH-HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC----------
Q 048309 68 SKEHEVLEIGCG----WGT-FAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP---------- 132 (288)
Q Consensus 68 ~~~~~vLDiGcG----~G~-~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~---------- 132 (288)
..++++|-.|++ .|. .+..+++. +++|+.++.++...+.+.+..+..+ ++.++.+|+.+..
T Consensus 29 l~gk~~lVTGasg~~GIG~aia~~la~~-G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~Dv~d~~~v~~~~~~~~ 104 (293)
T 3grk_A 29 LQGKRGLILGVANNRSIAWGIAKAAREA-GAELAFTYQGDALKKRVEPLAEELG---AFVAGHCDVADAASIDAVFETLE 104 (293)
T ss_dssp TTTCEEEEECCCSSSSHHHHHHHHHHHT-TCEEEEEECSHHHHHHHHHHHHHHT---CEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCcHHHHHHHHHHHC-CCEEEEEcCCHHHHHHHHHHHHhcC---CceEEECCCCCHHHHHHHHHHHH
Confidence 357789999965 333 44555654 8899999998766666655555443 5889999998743
Q ss_pred -CCCCCCEEEEccchh----------hhCHhhHHH-----------HHHHHhcccccCcEEEEEee
Q 048309 133 -KAKKYDRIISCEMME----------AVGHEYMEE-----------YFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 133 -~~~~fD~I~~~~~l~----------~~~~~~~~~-----------~l~~~~~~LkpgG~l~~~~~ 176 (288)
.-+..|+++.+..+. ..+.++... +.+.+...++.+|.++....
T Consensus 105 ~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~isS 170 (293)
T 3grk_A 105 KKWGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLTY 170 (293)
T ss_dssp HHTSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEEC
T ss_pred HhcCCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEee
Confidence 125799999875432 122233222 34556667777888877543
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=90.85 E-value=0.074 Score=47.57 Aligned_cols=42 Identities=24% Similarity=0.358 Sum_probs=34.4
Q ss_pred CCCEEEEECCcc-cHHHHHHHHccCCEEEEEcCCHHHHHHHHH
Q 048309 69 KEHEVLEIGCGW-GTFAIEVVRQTGCNYTGITLSAEQMKYAEM 110 (288)
Q Consensus 69 ~~~~vLDiGcG~-G~~~~~la~~~~~~v~giD~s~~~~~~a~~ 110 (288)
++.+|+=+|+|. |..+...+...|++|+++|.++...+.+.+
T Consensus 183 ~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~ 225 (381)
T 3p2y_A 183 KPASALVLGVGVAGLQALATAKRLGAKTTGYDVRPEVAEQVRS 225 (381)
T ss_dssp CCCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSGGGHHHHHH
T ss_pred CCCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 578999999996 777777777678899999999987776654
|
| >1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=90.57 E-value=0.62 Score=40.98 Aligned_cols=96 Identities=14% Similarity=0.152 Sum_probs=62.6
Q ss_pred cCCCCCCEEEEECCcc-cHHHHHHHHcc-CCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccC------CCCCCCC
Q 048309 65 ARVSKEHEVLEIGCGW-GTFAIEVVRQT-GCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYR------QLPKAKK 136 (288)
Q Consensus 65 ~~~~~~~~vLDiGcG~-G~~~~~la~~~-~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~------~~~~~~~ 136 (288)
.+++++.+||-+|+|. |..+.++++.. +++|+++|.+++..+.+++ .|.. .++..+-. ++.....
T Consensus 182 ~~~~~g~~VlV~GaG~vG~~avqlak~~~Ga~Vi~~~~~~~~~~~~~~----lGa~---~vi~~~~~~~~~v~~~~~g~g 254 (359)
T 1h2b_A 182 RTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAER----LGAD---HVVDARRDPVKQVMELTRGRG 254 (359)
T ss_dssp TTCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHH----TTCS---EEEETTSCHHHHHHHHTTTCC
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----hCCC---EEEeccchHHHHHHHHhCCCC
Confidence 6788999999999875 88888888876 8999999999988877754 3431 22222111 1112237
Q ss_pred CCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 137 YDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 137 fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
+|+|+-.-.-. . ...++.+.+. ++|++++..
T Consensus 255 ~Dvvid~~G~~----~--~~~~~~~~~~--~~G~~v~~g 285 (359)
T 1h2b_A 255 VNVAMDFVGSQ----A--TVDYTPYLLG--RMGRLIIVG 285 (359)
T ss_dssp EEEEEESSCCH----H--HHHHGGGGEE--EEEEEEECC
T ss_pred CcEEEECCCCc----h--HHHHHHHhhc--CCCEEEEEe
Confidence 99998643211 0 0144555566 899988743
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=90.53 E-value=0.093 Score=47.32 Aligned_cols=42 Identities=17% Similarity=0.275 Sum_probs=34.9
Q ss_pred CCCEEEEECCcc-cHHHHHHHHccCCEEEEEcCCHHHHHHHHH
Q 048309 69 KEHEVLEIGCGW-GTFAIEVVRQTGCNYTGITLSAEQMKYAEM 110 (288)
Q Consensus 69 ~~~~vLDiGcG~-G~~~~~la~~~~~~v~giD~s~~~~~~a~~ 110 (288)
++.+|+=+|+|. |..+..++...|++|+++|.++..++.+++
T Consensus 189 ~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~ 231 (405)
T 4dio_A 189 PAAKIFVMGAGVAGLQAIATARRLGAVVSATDVRPAAKEQVAS 231 (405)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTTHHHHHHH
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH
Confidence 567999999996 777777777778899999999987776654
|
| >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=90.51 E-value=2.4 Score=35.53 Aligned_cols=85 Identities=18% Similarity=0.187 Sum_probs=53.6
Q ss_pred EEEEECCcc-cH-HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCEEEEccchhhh
Q 048309 72 EVLEIGCGW-GT-FAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMMEAV 149 (288)
Q Consensus 72 ~vLDiGcG~-G~-~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~~~~~l~~~ 149 (288)
+|.=||||. |. ++..+++ .+.+|+++|.+++.++.+. ..|... . ...|..+ . ...|+|+..-.
T Consensus 2 ~i~iiG~G~~G~~~a~~l~~-~g~~V~~~~~~~~~~~~~~----~~g~~~--~-~~~~~~~--~-~~~D~vi~av~---- 66 (279)
T 2f1k_A 2 KIGVVGLGLIGASLAGDLRR-RGHYLIGVSRQQSTCEKAV----ERQLVD--E-AGQDLSL--L-QTAKIIFLCTP---- 66 (279)
T ss_dssp EEEEECCSHHHHHHHHHHHH-TTCEEEEECSCHHHHHHHH----HTTSCS--E-EESCGGG--G-TTCSEEEECSC----
T ss_pred EEEEEcCcHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHH----hCCCCc--c-ccCCHHH--h-CCCCEEEEECC----
Confidence 577799885 44 3444444 4679999999998776553 234321 1 1233332 2 57899987543
Q ss_pred CHhhHHHHHHHHhcccccCcEEE
Q 048309 150 GHEYMEEYFGCCESLLAKDGLLV 172 (288)
Q Consensus 150 ~~~~~~~~l~~~~~~LkpgG~l~ 172 (288)
+.....+++++...++++..++
T Consensus 67 -~~~~~~~~~~l~~~~~~~~~vv 88 (279)
T 2f1k_A 67 -IQLILPTLEKLIPHLSPTAIVT 88 (279)
T ss_dssp -HHHHHHHHHHHGGGSCTTCEEE
T ss_pred -HHHHHHHHHHHHhhCCCCCEEE
Confidence 2345677888888888877554
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=89.85 E-value=0.18 Score=48.79 Aligned_cols=105 Identities=15% Similarity=0.149 Sum_probs=65.5
Q ss_pred CCCEEEEECCcccHHHHHHHHc--------c-----CCEEEEEcC---CHHHHHHHH-----------HHHHHcC-----
Q 048309 69 KEHEVLEIGCGWGTFAIEVVRQ--------T-----GCNYTGITL---SAEQMKYAE-----------MKVNEAG----- 116 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~~la~~--------~-----~~~v~giD~---s~~~~~~a~-----------~~~~~~g----- 116 (288)
+.-+|+|+|.|+|.+...+.+. + ..+++.+|. +.+.+..+- +..+...
T Consensus 58 ~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 137 (689)
T 3pvc_A 58 QSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAG 137 (689)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSE
T ss_pred CceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCC
Confidence 4568999999999987766442 0 146999998 555554432 2222211
Q ss_pred -----CC---CceEEEEcccCCCC--C----CCCCCEEEEccchhhhCHhh-HHHHHHHHhcccccCcEEEE
Q 048309 117 -----LQ---DHIRLYLCDYRQLP--K----AKKYDRIISCEMMEAVGHEY-MEEYFGCCESLLAKDGLLVL 173 (288)
Q Consensus 117 -----~~---~~v~~~~~d~~~~~--~----~~~fD~I~~~~~l~~~~~~~-~~~~l~~~~~~LkpgG~l~~ 173 (288)
+. -.+++..+|+.+.- . ...+|+++..+.-..-.++. -..++..+.++++|||.+..
T Consensus 138 ~~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t 209 (689)
T 3pvc_A 138 CHRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFAPAKNPDMWNEQLFNAMARMTRPGGTFST 209 (689)
T ss_dssp EEEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSSCC--CCTTCSHHHHHHHHHHEEEEEEEEE
T ss_pred ceEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCCCCCCChhhhhHHHHHHHHHHhCCCCEEEe
Confidence 01 14677888886532 1 47899999865322211111 26788999999999998764
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=89.78 E-value=0.15 Score=45.70 Aligned_cols=42 Identities=24% Similarity=0.281 Sum_probs=33.5
Q ss_pred CCCEEEEECCcc-cHHHHHHHHccCCEEEEEcCCHHHHHHHHH
Q 048309 69 KEHEVLEIGCGW-GTFAIEVVRQTGCNYTGITLSAEQMKYAEM 110 (288)
Q Consensus 69 ~~~~vLDiGcG~-G~~~~~la~~~~~~v~giD~s~~~~~~a~~ 110 (288)
++.+|+=+|+|. |..+..+++..|++|+++|.++...+.+++
T Consensus 171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~~~~~~~~~ 213 (384)
T 1l7d_A 171 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVES 213 (384)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 578999999996 777777777777899999999876665543
|
| >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=89.35 E-value=2.8 Score=35.21 Aligned_cols=87 Identities=20% Similarity=0.274 Sum_probs=53.0
Q ss_pred EEEEECCcc-cHH-HHHHHHccCC--EEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCC-CCCEEEEccch
Q 048309 72 EVLEIGCGW-GTF-AIEVVRQTGC--NYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAK-KYDRIISCEMM 146 (288)
Q Consensus 72 ~vLDiGcG~-G~~-~~~la~~~~~--~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~-~fD~I~~~~~l 146 (288)
+|.=||+|. |.. +..+++ .+. +|+++|.+++.++.++ ..|... . ...|..+. -. ..|+|+..-..
T Consensus 3 ~I~iIG~G~mG~~~a~~l~~-~g~~~~V~~~d~~~~~~~~~~----~~g~~~--~-~~~~~~~~--~~~~aDvVilavp~ 72 (281)
T 2g5c_A 3 NVLIVGVGFMGGSFAKSLRR-SGFKGKIYGYDINPESISKAV----DLGIID--E-GTTSIAKV--EDFSPDFVMLSSPV 72 (281)
T ss_dssp EEEEESCSHHHHHHHHHHHH-TTCCSEEEEECSCHHHHHHHH----HTTSCS--E-EESCGGGG--GGTCCSEEEECSCH
T ss_pred EEEEEecCHHHHHHHHHHHh-cCCCcEEEEEeCCHHHHHHHH----HCCCcc--c-ccCCHHHH--hcCCCCEEEEcCCH
Confidence 677899886 443 344444 355 8999999998776554 334311 1 12233221 24 78999875433
Q ss_pred hhhCHhhHHHHHHHHhcccccCcEEEE
Q 048309 147 EAVGHEYMEEYFGCCESLLAKDGLLVL 173 (288)
Q Consensus 147 ~~~~~~~~~~~l~~~~~~LkpgG~l~~ 173 (288)
.....++.++...++++..++.
T Consensus 73 -----~~~~~v~~~l~~~l~~~~iv~~ 94 (281)
T 2g5c_A 73 -----RTFREIAKKLSYILSEDATVTD 94 (281)
T ss_dssp -----HHHHHHHHHHHHHSCTTCEEEE
T ss_pred -----HHHHHHHHHHHhhCCCCcEEEE
Confidence 3445677778788888875554
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=89.18 E-value=4.6 Score=34.11 Aligned_cols=103 Identities=18% Similarity=0.188 Sum_probs=65.0
Q ss_pred CCCEEEEECCcccH---HHHHHHHccCCEEEEEcCCHH-HHHHHHHHHHHcCCCCceEEEEcccCCCC-----------C
Q 048309 69 KEHEVLEIGCGWGT---FAIEVVRQTGCNYTGITLSAE-QMKYAEMKVNEAGLQDHIRLYLCDYRQLP-----------K 133 (288)
Q Consensus 69 ~~~~vLDiGcG~G~---~~~~la~~~~~~v~giD~s~~-~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-----------~ 133 (288)
.++++|-.|++.|. ++..|++ .+++|+.++.++. ..+...+..+..+ .++.++.+|+.+.. .
T Consensus 46 ~gk~vlVTGas~GIG~aia~~la~-~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~ 122 (291)
T 3ijr_A 46 KGKNVLITGGDSGIGRAVSIAFAK-EGANIAIAYLDEEGDANETKQYVEKEG--VKCVLLPGDLSDEQHCKDIVQETVRQ 122 (291)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESSCHHHHHHHHHHHHTTT--CCEEEEESCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHH-CCCEEEEEeCCchHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 46789988876542 3444555 4889999998765 3444455455444 47899999998743 1
Q ss_pred CCCCCEEEEccch-------hhhCHhhHHH-----------HHHHHhcccccCcEEEEE
Q 048309 134 AKKYDRIISCEMM-------EAVGHEYMEE-----------YFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 134 ~~~fD~I~~~~~l-------~~~~~~~~~~-----------~l~~~~~~LkpgG~l~~~ 174 (288)
-+..|+++.+... ..++.++... +.+.+...++.+|.++..
T Consensus 123 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~i 181 (291)
T 3ijr_A 123 LGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINT 181 (291)
T ss_dssp HSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEE
T ss_pred cCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEE
Confidence 1478999976432 2223333322 455667778888887764
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=89.10 E-value=8.5 Score=32.41 Aligned_cols=89 Identities=15% Similarity=0.245 Sum_probs=54.3
Q ss_pred CEEEEECCcc-cH-HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEE--------c---ccCCCC-CCCC
Q 048309 71 HEVLEIGCGW-GT-FAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYL--------C---DYRQLP-KAKK 136 (288)
Q Consensus 71 ~~vLDiGcG~-G~-~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~--------~---d~~~~~-~~~~ 136 (288)
.+|.=||+|. |. ++..+++ .+.+|+++|.+++.++..++. |+ .... . +..+.. .-..
T Consensus 4 m~i~iiG~G~~G~~~a~~l~~-~g~~V~~~~r~~~~~~~~~~~----g~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (316)
T 2ew2_A 4 MKIAIAGAGAMGSRLGIMLHQ-GGNDVTLIDQWPAHIEAIRKN----GL----IADFNGEEVVANLPIFSPEEIDHQNEQ 74 (316)
T ss_dssp CEEEEECCSHHHHHHHHHHHH-TTCEEEEECSCHHHHHHHHHH----CE----EEEETTEEEEECCCEECGGGCCTTSCC
T ss_pred CeEEEECcCHHHHHHHHHHHh-CCCcEEEEECCHHHHHHHHhC----CE----EEEeCCCeeEecceeecchhhcccCCC
Confidence 4788899985 43 3444555 477999999999877655433 32 1111 0 111111 1127
Q ss_pred CCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEE
Q 048309 137 YDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVL 173 (288)
Q Consensus 137 fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~ 173 (288)
+|+|+..-.- ....++++++...++++..++.
T Consensus 75 ~d~vi~~v~~-----~~~~~v~~~l~~~l~~~~~iv~ 106 (316)
T 2ew2_A 75 VDLIIALTKA-----QQLDAMFKAIQPMITEKTYVLC 106 (316)
T ss_dssp CSEEEECSCH-----HHHHHHHHHHGGGCCTTCEEEE
T ss_pred CCEEEEEecc-----ccHHHHHHHHHHhcCCCCEEEE
Confidence 8999875432 3457778888888888776554
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=89.03 E-value=6.5 Score=35.84 Aligned_cols=95 Identities=17% Similarity=0.259 Sum_probs=59.6
Q ss_pred CEEEEECCcc-cH-HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHH-------cC-C------CCceEEEEcccCCCCCC
Q 048309 71 HEVLEIGCGW-GT-FAIEVVRQTGCNYTGITLSAEQMKYAEMKVNE-------AG-L------QDHIRLYLCDYRQLPKA 134 (288)
Q Consensus 71 ~~vLDiGcG~-G~-~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~-------~g-~------~~~v~~~~~d~~~~~~~ 134 (288)
.+|.-||+|. |. ++..+++ .+.+|+++|.+++.++.+++.++. .| + .....+ ..|... -
T Consensus 38 ~kV~VIGaG~MG~~iA~~la~-~G~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i-~~~~~~---~ 112 (463)
T 1zcj_A 38 SSVGVLGLGTMGRGIAISFAR-VGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRF-SSSTKE---L 112 (463)
T ss_dssp CEEEEECCSHHHHHHHHHHHT-TTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEE-ESCGGG---G
T ss_pred CEEEEECcCHHHHHHHHHHHh-CCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhh-cCCHHH---H
Confidence 5789999997 44 4455555 478999999999988877664321 11 0 011222 344422 2
Q ss_pred CCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEE
Q 048309 135 KKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVL 173 (288)
Q Consensus 135 ~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~ 173 (288)
...|+|+..-. +.. .....+++++...++|+..++.
T Consensus 113 ~~aDlVIeaVp-e~~--~~k~~v~~~l~~~~~~~~ii~s 148 (463)
T 1zcj_A 113 STVDLVVEAVF-EDM--NLKKKVFAELSALCKPGAFLCT 148 (463)
T ss_dssp TTCSEEEECCC-SCH--HHHHHHHHHHHHHSCTTCEEEE
T ss_pred CCCCEEEEcCC-CCH--HHHHHHHHHHHhhCCCCeEEEe
Confidence 46899887532 222 3346788888888888876654
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=88.93 E-value=2.2 Score=35.32 Aligned_cols=101 Identities=13% Similarity=0.134 Sum_probs=65.5
Q ss_pred CCCEEEEECCcccH---HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-----------CC
Q 048309 69 KEHEVLEIGCGWGT---FAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-----------KA 134 (288)
Q Consensus 69 ~~~~vLDiGcG~G~---~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-----------~~ 134 (288)
.++++|-.|++.|. .+..+++ .+++|+.++.+++.++...+.. + .++.++..|+.+.. .-
T Consensus 7 ~gk~~lVTGas~gIG~a~a~~l~~-~G~~V~~~~r~~~~~~~~~~~~---~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (255)
T 4eso_A 7 QGKKAIVIGGTHGMGLATVRRLVE-GGAEVLLTGRNESNIARIREEF---G--PRVHALRSDIADLNEIAVLGAAAGQTL 80 (255)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHH---G--GGEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHh---C--CcceEEEccCCCHHHHHHHHHHHHHHh
Confidence 56788988876542 3444555 4889999999988776655544 2 36899999998753 11
Q ss_pred CCCCEEEEccchh------hhCHhhHHH-----------HHHHHhcccccCcEEEEEe
Q 048309 135 KKYDRIISCEMME------AVGHEYMEE-----------YFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 135 ~~fD~I~~~~~l~------~~~~~~~~~-----------~l~~~~~~LkpgG~l~~~~ 175 (288)
+..|+++.+..+. ..+.++... +.+.+...++++|.++...
T Consensus 81 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~is 138 (255)
T 4eso_A 81 GAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTS 138 (255)
T ss_dssp SSEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEEC
Confidence 4789988765332 223333322 3455666777788877643
|
| >3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* | Back alignment and structure |
|---|
Probab=88.71 E-value=1.6 Score=37.87 Aligned_cols=102 Identities=17% Similarity=0.197 Sum_probs=64.6
Q ss_pred CCEEEEECCcc-cH-HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHH-------cCC-CC---------ceEEEEcccCC
Q 048309 70 EHEVLEIGCGW-GT-FAIEVVRQTGCNYTGITLSAEQMKYAEMKVNE-------AGL-QD---------HIRLYLCDYRQ 130 (288)
Q Consensus 70 ~~~vLDiGcG~-G~-~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~-------~g~-~~---------~v~~~~~d~~~ 130 (288)
..+|.=||+|+ |. ++..++. .|.+|+.+|++++.++.+.++++. .|. .. +++.. .|+.+
T Consensus 6 ~~~VaViGaG~MG~giA~~~a~-~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~~-~~l~~ 83 (319)
T 3ado_A 6 AGDVLIVGSGLVGRSWAMLFAS-GGFRVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSC-TNLAE 83 (319)
T ss_dssp -CEEEEECCSHHHHHHHHHHHH-TTCCEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEE-CCHHH
T ss_pred CCeEEEECCcHHHHHHHHHHHh-CCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhcccc-cchHh
Confidence 45899999997 43 4555566 489999999999998887766543 121 10 12211 12211
Q ss_pred CCCCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecC
Q 048309 131 LPKAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSST 178 (288)
Q Consensus 131 ~~~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 178 (288)
.-...|+|+ -.+.+-+ +-..++++++-++++|+..|.-++.+.
T Consensus 84 --a~~~ad~Vi-Eav~E~l--~iK~~lf~~l~~~~~~~aIlaSNTSsl 126 (319)
T 3ado_A 84 --AVEGVVHIQ-ECVPENL--DLKRKIFAQLDSIVDDRVVLSSSSSCL 126 (319)
T ss_dssp --HTTTEEEEE-ECCCSCH--HHHHHHHHHHHTTCCSSSEEEECCSSC
T ss_pred --HhccCcEEe-eccccHH--HHHHHHHHHHHHHhhhcceeehhhhhc
Confidence 123566665 3345555 667889999999999988776655443
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=88.69 E-value=1.4 Score=37.56 Aligned_cols=88 Identities=11% Similarity=0.091 Sum_probs=54.5
Q ss_pred CCCCEEEEECCcc-cHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CCCCCCEEEEccc
Q 048309 68 SKEHEVLEIGCGW-GTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAKKYDRIISCEM 145 (288)
Q Consensus 68 ~~~~~vLDiGcG~-G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~~fD~I~~~~~ 145 (288)
..+.+|+=||+|. |......++..+.+|+++|.+++..+.+. ..| ++... ..++. .-...|+|+..-.
T Consensus 153 l~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~~~~~~~~----~~g----~~~~~--~~~l~~~l~~aDvVi~~~p 222 (293)
T 3d4o_A 153 IHGANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLARIA----EMG----MEPFH--ISKAAQELRDVDVCINTIP 222 (293)
T ss_dssp STTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH----HTT----SEEEE--GGGHHHHTTTCSEEEECCS
T ss_pred CCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHH----HCC----CeecC--hhhHHHHhcCCCEEEECCC
Confidence 4678999999885 66555555556789999999987554332 233 23321 12222 2257999998765
Q ss_pred hhhhCHhhHHHHHHHHhcccccCcEEEE
Q 048309 146 MEAVGHEYMEEYFGCCESLLAKDGLLVL 173 (288)
Q Consensus 146 l~~~~~~~~~~~l~~~~~~LkpgG~l~~ 173 (288)
.+.+.. +....++||+.++-
T Consensus 223 ~~~i~~--------~~l~~mk~~~~lin 242 (293)
T 3d4o_A 223 ALVVTA--------NVLAEMPSHTFVID 242 (293)
T ss_dssp SCCBCH--------HHHHHSCTTCEEEE
T ss_pred hHHhCH--------HHHHhcCCCCEEEE
Confidence 544421 12356789887664
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=88.63 E-value=3.3 Score=34.67 Aligned_cols=75 Identities=13% Similarity=0.092 Sum_probs=55.6
Q ss_pred CCCEEEEECCcccH---HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-----------CC
Q 048309 69 KEHEVLEIGCGWGT---FAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-----------KA 134 (288)
Q Consensus 69 ~~~~vLDiGcG~G~---~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-----------~~ 134 (288)
.|+.+|--|++.|. .+..+++ .|++|+.+|.+++.++.+.+.+...| .++..+.+|+.+.. .-
T Consensus 8 ~gKvalVTGas~GIG~aia~~la~-~Ga~Vvi~~~~~~~~~~~~~~l~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 84 (255)
T 4g81_D 8 TGKTALVTGSARGLGFAYAEGLAA-AGARVILNDIRATLLAESVDTLTRKG--YDAHGVAFDVTDELAIEAAFSKLDAEG 84 (255)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHH-TTCEEEECCSCHHHHHHHHHHHHHTT--CCEEECCCCTTCHHHHHHHHHHHHHTT
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHHC
Confidence 57788877766553 3445555 48999999999999888887777776 36889999997632 23
Q ss_pred CCCCEEEEccch
Q 048309 135 KKYDRIISCEMM 146 (288)
Q Consensus 135 ~~fD~I~~~~~l 146 (288)
++.|+++.+..+
T Consensus 85 G~iDiLVNNAG~ 96 (255)
T 4g81_D 85 IHVDILINNAGI 96 (255)
T ss_dssp CCCCEEEECCCC
T ss_pred CCCcEEEECCCC
Confidence 689999987543
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=88.60 E-value=3.7 Score=28.85 Aligned_cols=68 Identities=12% Similarity=0.117 Sum_probs=44.3
Q ss_pred CCCEEEEECCcc-cHHHH-HHHHccC-CEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC----CCCCCCEEE
Q 048309 69 KEHEVLEIGCGW-GTFAI-EVVRQTG-CNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP----KAKKYDRII 141 (288)
Q Consensus 69 ~~~~vLDiGcG~-G~~~~-~la~~~~-~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~----~~~~fD~I~ 141 (288)
.+.+|+-+|+|. |.... .+.+ .+ .+|+++|.+++..+... . ..+.++..|..+.. .-..+|+|+
T Consensus 4 ~~~~v~I~G~G~iG~~~~~~l~~-~g~~~v~~~~r~~~~~~~~~----~----~~~~~~~~d~~~~~~~~~~~~~~d~vi 74 (118)
T 3ic5_A 4 MRWNICVVGAGKIGQMIAALLKT-SSNYSVTVADHDLAALAVLN----R----MGVATKQVDAKDEAGLAKALGGFDAVI 74 (118)
T ss_dssp TCEEEEEECCSHHHHHHHHHHHH-CSSEEEEEEESCHHHHHHHH----T----TTCEEEECCTTCHHHHHHHTTTCSEEE
T ss_pred CcCeEEEECCCHHHHHHHHHHHh-CCCceEEEEeCCHHHHHHHH----h----CCCcEEEecCCCHHHHHHHHcCCCEEE
Confidence 356899999953 33322 3333 45 78999999988766544 2 24677888886632 224789998
Q ss_pred Eccc
Q 048309 142 SCEM 145 (288)
Q Consensus 142 ~~~~ 145 (288)
....
T Consensus 75 ~~~~ 78 (118)
T 3ic5_A 75 SAAP 78 (118)
T ss_dssp ECSC
T ss_pred ECCC
Confidence 7653
|
| >3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A | Back alignment and structure |
|---|
Probab=88.58 E-value=0.31 Score=45.01 Aligned_cols=76 Identities=8% Similarity=0.024 Sum_probs=54.3
Q ss_pred CCEEEEECCcccHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCC---------------
Q 048309 70 EHEVLEIGCGWGTFAIEVVRQTGC-NYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPK--------------- 133 (288)
Q Consensus 70 ~~~vLDiGcG~G~~~~~la~~~~~-~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~--------------- 133 (288)
..+++|+-||.|+++.-+.+. |. .|.++|+++.+++.-+.++... +...++.+|+.++..
T Consensus 88 ~~~viDLFaG~GGlslG~~~a-G~~~v~avE~d~~A~~ty~~N~~~~---p~~~~~~~DI~~i~~~~~~~~~~~~~~~~i 163 (482)
T 3me5_A 88 AFRFIDLFAGIGGIRRGFESI-GGQCVFTSEWNKHAVRTYKANHYCD---PATHHFNEDIRDITLSHQEGVSDEAAAEHI 163 (482)
T ss_dssp SEEEEEESCTTSHHHHHHHTT-TEEEEEEECCCHHHHHHHHHHSCCC---TTTCEEESCTHHHHCTTCTTSCHHHHHHHH
T ss_pred cceEEEecCCccHHHHHHHHC-CCEEEEEEeCCHHHHHHHHHhcccC---CCcceeccchhhhhhccccccchhhHHhhh
Confidence 458999999999999888765 44 4889999998877766664211 234667788866431
Q ss_pred ---CCCCCEEEEccchhhh
Q 048309 134 ---AKKYDRIISCEMMEAV 149 (288)
Q Consensus 134 ---~~~fD~I~~~~~l~~~ 149 (288)
...+|+++....+..+
T Consensus 164 ~~~~~~~Dvl~gGpPCQ~F 182 (482)
T 3me5_A 164 RQHIPEHDVLLAGFPCQPF 182 (482)
T ss_dssp HHHSCCCSEEEEECCCCCC
T ss_pred hhcCCCCCEEEecCCCcch
Confidence 1468999987766554
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=88.31 E-value=1.8 Score=37.03 Aligned_cols=88 Identities=17% Similarity=0.150 Sum_probs=54.9
Q ss_pred CCCCEEEEECCcc-cHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CCCCCCEEEEccc
Q 048309 68 SKEHEVLEIGCGW-GTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAKKYDRIISCEM 145 (288)
Q Consensus 68 ~~~~~vLDiGcG~-G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~~fD~I~~~~~ 145 (288)
..+.+|+=||+|. |......+...+.+|+++|.+++..+.+. ..| ++... ..++. .-...|+|+..-.
T Consensus 155 l~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~~~~~~~~----~~g----~~~~~--~~~l~~~l~~aDvVi~~~p 224 (300)
T 2rir_A 155 IHGSQVAVLGLGRTGMTIARTFAALGANVKVGARSSAHLARIT----EMG----LVPFH--TDELKEHVKDIDICINTIP 224 (300)
T ss_dssp STTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH----HTT----CEEEE--GGGHHHHSTTCSEEEECCS
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH----HCC----CeEEc--hhhHHHHhhCCCEEEECCC
Confidence 3678999999985 55555555456789999999986544332 223 23221 12222 2257999998766
Q ss_pred hhhhCHhhHHHHHHHHhcccccCcEEEE
Q 048309 146 MEAVGHEYMEEYFGCCESLLAKDGLLVL 173 (288)
Q Consensus 146 l~~~~~~~~~~~l~~~~~~LkpgG~l~~ 173 (288)
.+.++. .....++||++++-
T Consensus 225 ~~~i~~--------~~~~~mk~g~~lin 244 (300)
T 2rir_A 225 SMILNQ--------TVLSSMTPKTLILD 244 (300)
T ss_dssp SCCBCH--------HHHTTSCTTCEEEE
T ss_pred hhhhCH--------HHHHhCCCCCEEEE
Confidence 644421 23477899987664
|
| >3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=88.26 E-value=1.8 Score=35.93 Aligned_cols=105 Identities=13% Similarity=0.089 Sum_probs=64.9
Q ss_pred CCCCCEEEEECCc-ccHH----HHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC---------
Q 048309 67 VSKEHEVLEIGCG-WGTF----AIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP--------- 132 (288)
Q Consensus 67 ~~~~~~vLDiGcG-~G~~----~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~--------- 132 (288)
..++++||-.|++ +|.+ +..+++ .+++|+.++.+....+.+++..+..+ ++.++.+|+.+..
T Consensus 11 ~~~~k~vlITGa~~~~giG~~ia~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~Dv~~~~~v~~~~~~~ 86 (271)
T 3ek2_A 11 FLDGKRILLTGLLSNRSIAYGIAKACKR-EGAELAFTYVGDRFKDRITEFAAEFG---SELVFPCDVADDAQIDALFASL 86 (271)
T ss_dssp TTTTCEEEECCCCSTTSHHHHHHHHHHH-TTCEEEEEESSGGGHHHHHHHHHHTT---CCCEEECCTTCHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCCCCcHHHHHHHHHHH-cCCCEEEEecchhhHHHHHHHHHHcC---CcEEEECCCCCHHHHHHHHHHH
Confidence 3467899988864 2333 344444 48899999888655555555544443 4788999998743
Q ss_pred --CCCCCCEEEEccchhh-----------hCHhhHHH-----------HHHHHhcccccCcEEEEEe
Q 048309 133 --KAKKYDRIISCEMMEA-----------VGHEYMEE-----------YFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 133 --~~~~fD~I~~~~~l~~-----------~~~~~~~~-----------~l~~~~~~LkpgG~l~~~~ 175 (288)
.-+..|+++.+..+.. .+.++... +.+.+...++++|.++...
T Consensus 87 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~is 153 (271)
T 3ek2_A 87 KTHWDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLS 153 (271)
T ss_dssp HHHCSCEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred HHHcCCCCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhccCceEEEEe
Confidence 1247899998654322 23333332 3455666777788877644
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* | Back alignment and structure |
|---|
Probab=88.15 E-value=2.2 Score=35.16 Aligned_cols=103 Identities=16% Similarity=0.075 Sum_probs=63.3
Q ss_pred CCCEEEEECCcccHHHHHHHHc----cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-C----------
Q 048309 69 KEHEVLEIGCGWGTFAIEVVRQ----TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-K---------- 133 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~~la~~----~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~---------- 133 (288)
.+++||-.|+ +|.++..+++. .+++|++++.++...+...+.+...+ .++.++.+|+.+.. .
T Consensus 3 ~~k~vlITGa-sggIG~~~a~~L~~~~g~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~ 79 (276)
T 1wma_A 3 GIHVALVTGG-NKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEG--LSPRFHQLDIDDLQSIRALRDFLRKE 79 (276)
T ss_dssp CCCEEEESSC-SSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTT--CCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCC-CcHHHHHHHHHHHHhcCCeEEEEeCChHHHHHHHHHHHhcC--CeeEEEECCCCCHHHHHHHHHHHHHh
Confidence 4567886664 45444444332 37899999999887766666665544 36899999998743 0
Q ss_pred CCCCCEEEEccchhhh-----C-HhhHH-----------HHHHHHhcccccCcEEEEE
Q 048309 134 AKKYDRIISCEMMEAV-----G-HEYME-----------EYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 134 ~~~fD~I~~~~~l~~~-----~-~~~~~-----------~~l~~~~~~LkpgG~l~~~ 174 (288)
.+.+|+++.+...... + .++.. .+++.+...++++|.++..
T Consensus 80 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~~ 137 (276)
T 1wma_A 80 YGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNV 137 (276)
T ss_dssp HSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred cCCCCEEEECCcccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCCCCEEEEE
Confidence 1378999876543211 0 12221 2445566667777777764
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=88.00 E-value=5.2 Score=33.97 Aligned_cols=95 Identities=15% Similarity=0.223 Sum_probs=58.4
Q ss_pred CEEEEECCcc-cH-HHHHHHHccCCEEEEEcCCHHHHHHHHHHHH-------HcCC-C-------------CceEEEEcc
Q 048309 71 HEVLEIGCGW-GT-FAIEVVRQTGCNYTGITLSAEQMKYAEMKVN-------EAGL-Q-------------DHIRLYLCD 127 (288)
Q Consensus 71 ~~vLDiGcG~-G~-~~~~la~~~~~~v~giD~s~~~~~~a~~~~~-------~~g~-~-------------~~v~~~~~d 127 (288)
.+|.=||+|. |. ++..+++. +.+|+++|.+++.++.+++.+. +.|. + .++++. .|
T Consensus 16 ~~I~VIG~G~mG~~iA~~la~~-G~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~~-~~ 93 (302)
T 1f0y_A 16 KHVTVIGGGLMGAGIAQVAAAT-GHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATS-TD 93 (302)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEE-SC
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceEEe-cC
Confidence 5799999996 54 55666664 7899999999998887655332 1221 0 023322 23
Q ss_pred cCCCCCCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEE
Q 048309 128 YRQLPKAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLV 172 (288)
Q Consensus 128 ~~~~~~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~ 172 (288)
..+ .-...|+|+..-. +.. +....+++++...++++..++
T Consensus 94 ~~~--~~~~aD~Vi~avp-~~~--~~~~~v~~~l~~~~~~~~iv~ 133 (302)
T 1f0y_A 94 AAS--VVHSTDLVVEAIV-ENL--KVKNELFKRLDKFAAEHTIFA 133 (302)
T ss_dssp HHH--HTTSCSEEEECCC-SCH--HHHHHHHHHHTTTSCTTCEEE
T ss_pred HHH--hhcCCCEEEEcCc-CcH--HHHHHHHHHHHhhCCCCeEEE
Confidence 221 1246899887532 111 234677888888888877554
|
| >3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=87.99 E-value=4.7 Score=34.10 Aligned_cols=104 Identities=18% Similarity=0.165 Sum_probs=66.0
Q ss_pred CCCEEEEECCcccH---HHHHHHHccCCEEEEEcCC--HHHHHHHHHHHHHcCCCCceEEEEcccCCCC-----------
Q 048309 69 KEHEVLEIGCGWGT---FAIEVVRQTGCNYTGITLS--AEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP----------- 132 (288)
Q Consensus 69 ~~~~vLDiGcG~G~---~~~~la~~~~~~v~giD~s--~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~----------- 132 (288)
.++++|-.|++.|. ++..|++ .|++|+.++.+ +...+...+..+..+ .++.++.+|+.+..
T Consensus 48 ~~k~vlVTGas~GIG~aia~~la~-~G~~V~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~ 124 (294)
T 3r3s_A 48 KDRKALVTGGDSGIGRAAAIAYAR-EGADVAINYLPAEEEDAQQVKALIEECG--RKAVLLPGDLSDESFARSLVHKARE 124 (294)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHH-TTCEEEEECCGGGHHHHHHHHHHHHHTT--CCEEECCCCTTSHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHH-CCCEEEEEeCCcchhHHHHHHHHHHHcC--CcEEEEEecCCCHHHHHHHHHHHHH
Confidence 46788988876542 3444555 48899999876 344555555555555 46899999998743
Q ss_pred CCCCCCEEEEccchh-------hhCHhhHHH-----------HHHHHhcccccCcEEEEEe
Q 048309 133 KAKKYDRIISCEMME-------AVGHEYMEE-----------YFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 133 ~~~~fD~I~~~~~l~-------~~~~~~~~~-----------~l~~~~~~LkpgG~l~~~~ 175 (288)
.-+..|+++.+.... ..+.++... +.+.+...++++|.++...
T Consensus 125 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~is 185 (294)
T 3r3s_A 125 ALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTS 185 (294)
T ss_dssp HHTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEEC
T ss_pred HcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEEC
Confidence 115789998875432 123233322 4556667788888887743
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=87.93 E-value=5.5 Score=32.45 Aligned_cols=75 Identities=17% Similarity=0.210 Sum_probs=53.3
Q ss_pred CCCEEEEECCcccH---HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-----------CC
Q 048309 69 KEHEVLEIGCGWGT---FAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-----------KA 134 (288)
Q Consensus 69 ~~~~vLDiGcG~G~---~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-----------~~ 134 (288)
.++++|=.|++.|. ++..+++ .+++|++++.+++..+...+.++..+ .++.++..|+.+.. ..
T Consensus 4 ~~k~vlITGas~gIG~~~a~~l~~-~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (247)
T 3lyl_A 4 NEKVALVTGASRGIGFEVAHALAS-KGATVVGTATSQASAEKFENSMKEKG--FKARGLVLNISDIESIQNFFAEIKAEN 80 (247)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHH-TTCEEEEEESSHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHTT
T ss_pred CCCEEEEECCCChHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEEecCCCHHHHHHHHHHHHHHc
Confidence 35678877765442 3444455 48899999999988887777777665 36899999998742 23
Q ss_pred CCCCEEEEccch
Q 048309 135 KKYDRIISCEMM 146 (288)
Q Consensus 135 ~~fD~I~~~~~l 146 (288)
+..|+++.+..+
T Consensus 81 ~~id~li~~Ag~ 92 (247)
T 3lyl_A 81 LAIDILVNNAGI 92 (247)
T ss_dssp CCCSEEEECCCC
T ss_pred CCCCEEEECCCC
Confidence 478999887543
|
| >3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=87.88 E-value=6.9 Score=32.62 Aligned_cols=104 Identities=13% Similarity=0.123 Sum_probs=65.4
Q ss_pred CCCEEEEECCcccH---HHHHHHHccCCEEEEEcC-CHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-----------C
Q 048309 69 KEHEVLEIGCGWGT---FAIEVVRQTGCNYTGITL-SAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-----------K 133 (288)
Q Consensus 69 ~~~~vLDiGcG~G~---~~~~la~~~~~~v~giD~-s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-----------~ 133 (288)
.++++|-.|++.|. ++..+++ .|++|+.++. +++..+...+.++..+ .++.++.+|+.+.. .
T Consensus 30 ~gk~~lVTGas~GIG~aia~~la~-~G~~V~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~ 106 (271)
T 3v2g_A 30 AGKTAFVTGGSRGIGAAIAKRLAL-EGAAVALTYVNAAERAQAVVSEIEQAG--GRAVAIRADNRDAEAIEQAIRETVEA 106 (271)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHH-CCCEEEEEeCCCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 56789988876543 3445555 4889998854 4455555555555554 46899999998743 1
Q ss_pred CCCCCEEEEccchh------hhCHhhHHH-----------HHHHHhcccccCcEEEEEe
Q 048309 134 AKKYDRIISCEMME------AVGHEYMEE-----------YFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 134 ~~~fD~I~~~~~l~------~~~~~~~~~-----------~l~~~~~~LkpgG~l~~~~ 175 (288)
-+..|+++.+..+. ..+.++... +.+.+...|+++|.++...
T Consensus 107 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~is 165 (271)
T 3v2g_A 107 LGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIG 165 (271)
T ss_dssp HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEEC
T ss_pred cCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 14799999875432 222233222 3555667777788877653
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=87.84 E-value=3 Score=34.87 Aligned_cols=74 Identities=14% Similarity=0.153 Sum_probs=56.7
Q ss_pred CCCEEEEECCcccH---HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-----------CC
Q 048309 69 KEHEVLEIGCGWGT---FAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-----------KA 134 (288)
Q Consensus 69 ~~~~vLDiGcG~G~---~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-----------~~ 134 (288)
+++.+|--|++.|. .+..+++. |++|+.+|.+++.++.+.+.++..| .++.++..|+.+.. .-
T Consensus 6 ~gKvalVTGas~GIG~aiA~~la~~-Ga~Vv~~~~~~~~~~~~~~~i~~~g--~~~~~~~~Dvt~~~~v~~~~~~~~~~~ 82 (254)
T 4fn4_A 6 KNKVVIVTGAGSGIGRAIAKKFALN-DSIVVAVELLEDRLNQIVQELRGMG--KEVLGVKADVSKKKDVEEFVRRTFETY 82 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 57788888877654 34555554 8999999999999988888887776 47899999998743 12
Q ss_pred CCCCEEEEccc
Q 048309 135 KKYDRIISCEM 145 (288)
Q Consensus 135 ~~fD~I~~~~~ 145 (288)
+..|+++.+..
T Consensus 83 G~iDiLVNNAG 93 (254)
T 4fn4_A 83 SRIDVLCNNAG 93 (254)
T ss_dssp SCCCEEEECCC
T ss_pred CCCCEEEECCc
Confidence 68999998653
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=87.80 E-value=0.81 Score=41.95 Aligned_cols=65 Identities=11% Similarity=0.173 Sum_probs=47.1
Q ss_pred CCEEEEECCcccHHHHHHHHc---cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-----CCCCCCEEE
Q 048309 70 EHEVLEIGCGWGTFAIEVVRQ---TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-----KAKKYDRII 141 (288)
Q Consensus 70 ~~~vLDiGcG~G~~~~~la~~---~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-----~~~~fD~I~ 141 (288)
.++|+=+|||. .+..+|+. .+..|+.||.+++.++.+.+.+ .+.++.+|..+.. .-+.+|+++
T Consensus 3 ~M~iiI~G~G~--vG~~la~~L~~~~~~v~vId~d~~~~~~~~~~~-------~~~~i~Gd~~~~~~L~~Agi~~ad~~i 73 (461)
T 4g65_A 3 AMKIIILGAGQ--VGGTLAENLVGENNDITIVDKDGDRLRELQDKY-------DLRVVNGHASHPDVLHEAGAQDADMLV 73 (461)
T ss_dssp CEEEEEECCSH--HHHHHHHHTCSTTEEEEEEESCHHHHHHHHHHS-------SCEEEESCTTCHHHHHHHTTTTCSEEE
T ss_pred cCEEEEECCCH--HHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhc-------CcEEEEEcCCCHHHHHhcCCCcCCEEE
Confidence 45788888874 33334433 4778999999999887766542 4688999998854 346899988
Q ss_pred Ec
Q 048309 142 SC 143 (288)
Q Consensus 142 ~~ 143 (288)
+.
T Consensus 74 a~ 75 (461)
T 4g65_A 74 AV 75 (461)
T ss_dssp EC
T ss_pred EE
Confidence 75
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=87.64 E-value=3.1 Score=35.44 Aligned_cols=89 Identities=15% Similarity=0.159 Sum_probs=54.0
Q ss_pred CCEEEEECCcc-cH-HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCEEEEccchh
Q 048309 70 EHEVLEIGCGW-GT-FAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMME 147 (288)
Q Consensus 70 ~~~vLDiGcG~-G~-~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~~~~~l~ 147 (288)
..+|.=||+|. |. ++..+++ .+.+|++.|.+++.++.+.+ .|. .....+..+.. ...|+|+..-.-.
T Consensus 7 ~~~I~iIG~G~mG~~~a~~l~~-~G~~V~~~dr~~~~~~~~~~----~g~----~~~~~~~~e~~--~~aDvvi~~vp~~ 75 (303)
T 3g0o_A 7 DFHVGIVGLGSMGMGAARSCLR-AGLSTWGADLNPQACANLLA----EGA----CGAAASAREFA--GVVDALVILVVNA 75 (303)
T ss_dssp CCEEEEECCSHHHHHHHHHHHH-TTCEEEEECSCHHHHHHHHH----TTC----SEEESSSTTTT--TTCSEEEECCSSH
T ss_pred CCeEEEECCCHHHHHHHHHHHH-CCCeEEEEECCHHHHHHHHH----cCC----ccccCCHHHHH--hcCCEEEEECCCH
Confidence 35788899985 44 4445555 47899999999987766543 243 11233443332 4679998754321
Q ss_pred hhCHhhHHHHH---HHHhcccccCcEEEE
Q 048309 148 AVGHEYMEEYF---GCCESLLAKDGLLVL 173 (288)
Q Consensus 148 ~~~~~~~~~~l---~~~~~~LkpgG~l~~ 173 (288)
......+ +.+...+++|..++.
T Consensus 76 ----~~~~~v~~~~~~l~~~l~~g~ivv~ 100 (303)
T 3g0o_A 76 ----AQVRQVLFGEDGVAHLMKPGSAVMV 100 (303)
T ss_dssp ----HHHHHHHC--CCCGGGSCTTCEEEE
T ss_pred ----HHHHHHHhChhhHHhhCCCCCEEEe
Confidence 2334454 566677887776553
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=87.30 E-value=0.63 Score=51.54 Aligned_cols=100 Identities=20% Similarity=0.234 Sum_probs=67.3
Q ss_pred HHcCCCCCCEEEEECC--cccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEc---ccC----CCCC
Q 048309 63 EKARVSKEHEVLEIGC--GWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLC---DYR----QLPK 133 (288)
Q Consensus 63 ~~~~~~~~~~vLDiGc--G~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~---d~~----~~~~ 133 (288)
...++++|.+||-.|+ |.|..+..+|+..|++|++++.+++..+.+++.+...|.. .++.. ++. ....
T Consensus 1661 ~~a~l~~Ge~VLI~gaaGgVG~aAiqlAk~~Ga~Viat~~s~~k~~~l~~~~~~lga~---~v~~~~~~~~~~~i~~~t~ 1737 (2512)
T 2vz8_A 1661 VRGRMQPGESVLIHSGSGGVGQAAIAIALSRGCRVFTTVGSAEKRAYLQARFPQLDET---CFANSRDTSFEQHVLRHTA 1737 (2512)
T ss_dssp TTTCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCTTCCST---TEEESSSSHHHHHHHHTTT
T ss_pred HHhcCCCCCEEEEEeCChHHHHHHHHHHHHcCCEEEEEeCChhhhHHHHhhcCCCCce---EEecCCCHHHHHHHHHhcC
Confidence 4456789999998863 4699999999888889999999998887776643222321 12221 111 1112
Q ss_pred CCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 134 AKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 134 ~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
...+|+|+-... ...+....+.|+++|+++..
T Consensus 1738 g~GvDvVld~~g---------~~~l~~~l~~L~~~Gr~V~i 1769 (2512)
T 2vz8_A 1738 GKGVDLVLNSLA---------EEKLQASVRCLAQHGRFLEI 1769 (2512)
T ss_dssp SCCEEEEEECCC---------HHHHHHHHTTEEEEEEEEEC
T ss_pred CCCceEEEECCC---------chHHHHHHHhcCCCcEEEEe
Confidence 346999986421 24467778999999998874
|
| >2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* | Back alignment and structure |
|---|
Probab=87.21 E-value=5.3 Score=32.95 Aligned_cols=74 Identities=12% Similarity=0.162 Sum_probs=50.8
Q ss_pred CCCEEEEECCcccH---HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-----C-------
Q 048309 69 KEHEVLEIGCGWGT---FAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-----K------- 133 (288)
Q Consensus 69 ~~~~vLDiGcG~G~---~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-----~------- 133 (288)
.++++|-.|++.|. ++..|++ .+++|++++.+++..+...+.+...+ .++.++.+|+.+.. .
T Consensus 8 ~~k~vlVTGas~giG~~ia~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (260)
T 2ae2_A 8 EGCTALVTGGSRGIGYGIVEELAS-LGASVYTCSRNQKELNDCLTQWRSKG--FKVEASVCDLSSRSERQELMNTVANHF 84 (260)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCcHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 46788877765432 3344444 48899999999887766655555444 36889999998742 0
Q ss_pred CCCCCEEEEccc
Q 048309 134 AKKYDRIISCEM 145 (288)
Q Consensus 134 ~~~fD~I~~~~~ 145 (288)
.+..|+++.+..
T Consensus 85 ~g~id~lv~~Ag 96 (260)
T 2ae2_A 85 HGKLNILVNNAG 96 (260)
T ss_dssp TTCCCEEEECCC
T ss_pred CCCCCEEEECCC
Confidence 167999998754
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=87.17 E-value=6.4 Score=33.06 Aligned_cols=84 Identities=13% Similarity=0.143 Sum_probs=53.5
Q ss_pred CEEEEECC-cc-cH-HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCEEEEccchh
Q 048309 71 HEVLEIGC-GW-GT-FAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMME 147 (288)
Q Consensus 71 ~~vLDiGc-G~-G~-~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~~~~~l~ 147 (288)
.+|.=||+ |. |. ++..+++ .+.+|+++|.+++.++.+.+ .|+ .. .+..+ .-...|+|+..-.-
T Consensus 12 m~I~iIG~tG~mG~~la~~l~~-~g~~V~~~~r~~~~~~~~~~----~g~----~~--~~~~~--~~~~aDvVi~av~~- 77 (286)
T 3c24_A 12 KTVAILGAGGKMGARITRKIHD-SAHHLAAIEIAPEGRDRLQG----MGI----PL--TDGDG--WIDEADVVVLALPD- 77 (286)
T ss_dssp CEEEEETTTSHHHHHHHHHHHH-SSSEEEEECCSHHHHHHHHH----TTC----CC--CCSSG--GGGTCSEEEECSCH-
T ss_pred CEEEEECCCCHHHHHHHHHHHh-CCCEEEEEECCHHHHHHHHh----cCC----Cc--CCHHH--HhcCCCEEEEcCCc-
Confidence 47999999 85 44 3444555 47799999999887765543 343 11 12211 22468999875432
Q ss_pred hhCHhhHHHHHHHHhcccccCcEEE
Q 048309 148 AVGHEYMEEYFGCCESLLAKDGLLV 172 (288)
Q Consensus 148 ~~~~~~~~~~l~~~~~~LkpgG~l~ 172 (288)
....++++++...+++|..++
T Consensus 78 ----~~~~~v~~~l~~~l~~~~ivv 98 (286)
T 3c24_A 78 ----NIIEKVAEDIVPRVRPGTIVL 98 (286)
T ss_dssp ----HHHHHHHHHHGGGSCTTCEEE
T ss_pred ----hHHHHHHHHHHHhCCCCCEEE
Confidence 335677788888888776544
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=86.84 E-value=5.1 Score=33.20 Aligned_cols=88 Identities=16% Similarity=0.132 Sum_probs=53.8
Q ss_pred CCEEEEECCcc-cH-HHHHHHHccCCE-EEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCEEEEccch
Q 048309 70 EHEVLEIGCGW-GT-FAIEVVRQTGCN-YTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMM 146 (288)
Q Consensus 70 ~~~vLDiGcG~-G~-~~~~la~~~~~~-v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~~~~~l 146 (288)
+.+|.=||||. |. ++..+++. +.+ |+++|.+++..+...+. .+ +.+ ..|..+. -...|+|+..-.-
T Consensus 10 ~m~i~iiG~G~mG~~~a~~l~~~-g~~~v~~~~~~~~~~~~~~~~---~g----~~~-~~~~~~~--~~~~Dvvi~av~~ 78 (266)
T 3d1l_A 10 DTPIVLIGAGNLATNLAKALYRK-GFRIVQVYSRTEESARELAQK---VE----AEY-TTDLAEV--NPYAKLYIVSLKD 78 (266)
T ss_dssp GCCEEEECCSHHHHHHHHHHHHH-TCCEEEEECSSHHHHHHHHHH---TT----CEE-ESCGGGS--CSCCSEEEECCCH
T ss_pred CCeEEEEcCCHHHHHHHHHHHHC-CCeEEEEEeCCHHHHHHHHHH---cC----Cce-eCCHHHH--hcCCCEEEEecCH
Confidence 35788899985 44 34444443 666 89999999877655433 23 222 2333332 2468999875432
Q ss_pred hhhCHhhHHHHHHHHhcccccCcEEEE
Q 048309 147 EAVGHEYMEEYFGCCESLLAKDGLLVL 173 (288)
Q Consensus 147 ~~~~~~~~~~~l~~~~~~LkpgG~l~~ 173 (288)
....++++++...+++|..++-
T Consensus 79 -----~~~~~v~~~l~~~~~~~~ivv~ 100 (266)
T 3d1l_A 79 -----SAFAELLQGIVEGKREEALMVH 100 (266)
T ss_dssp -----HHHHHHHHHHHTTCCTTCEEEE
T ss_pred -----HHHHHHHHHHHhhcCCCcEEEE
Confidence 3346677788788887765554
|
| >3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A* | Back alignment and structure |
|---|
Probab=86.81 E-value=1.2 Score=40.30 Aligned_cols=89 Identities=15% Similarity=0.126 Sum_probs=55.1
Q ss_pred CCCCCEEEEECCcc-cHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCEEEEccc
Q 048309 67 VSKEHEVLEIGCGW-GTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEM 145 (288)
Q Consensus 67 ~~~~~~vLDiGcG~-G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~~~~~ 145 (288)
...|++|+=+|+|. |......++..|.+|+++|.++.....+. ..|. ++ .++.+ .-...|+|+....
T Consensus 217 ~L~GktV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~dp~ra~~A~----~~G~----~v--~~Lee--al~~ADIVi~atg 284 (435)
T 3gvp_A 217 MFGGKQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDPICALQAC----MDGF----RL--VKLNE--VIRQVDIVITCTG 284 (435)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH----HTTC----EE--CCHHH--HTTTCSEEEECSS
T ss_pred eecCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEeCChhhhHHHH----HcCC----Ee--ccHHH--HHhcCCEEEECCC
Confidence 34788999999997 66666666667889999999986443332 2232 22 23322 2247899988532
Q ss_pred hhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 146 MEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 146 l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
-.++ +-.+..+.+|+|++++-.
T Consensus 285 t~~l-------I~~e~l~~MK~gailINv 306 (435)
T 3gvp_A 285 NKNV-------VTREHLDRMKNSCIVCNM 306 (435)
T ss_dssp CSCS-------BCHHHHHHSCTTEEEEEC
T ss_pred Cccc-------CCHHHHHhcCCCcEEEEe
Confidence 2222 111334778999877654
|
| >3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A | Back alignment and structure |
|---|
Probab=86.73 E-value=5.7 Score=32.99 Aligned_cols=105 Identities=21% Similarity=0.210 Sum_probs=65.7
Q ss_pred CCCEEEEECCcccH---HHHHHHHccCCEEEEEcC-CHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-----------C
Q 048309 69 KEHEVLEIGCGWGT---FAIEVVRQTGCNYTGITL-SAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-----------K 133 (288)
Q Consensus 69 ~~~~vLDiGcG~G~---~~~~la~~~~~~v~giD~-s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-----------~ 133 (288)
.++++|-.|++.|. .+..+++ .+++|+.++. +++..+...+.++..+ .++.++.+|+.+.. .
T Consensus 17 ~~k~~lVTGas~gIG~aia~~l~~-~G~~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~ 93 (270)
T 3is3_A 17 DGKVALVTGSGRGIGAAVAVHLGR-LGAKVVVNYANSTKDAEKVVSEIKALG--SDAIAIKADIRQVPEIVKLFDQAVAH 93 (270)
T ss_dssp TTCEEEESCTTSHHHHHHHHHHHH-TTCEEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHH-CCCEEEEEcCCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 46788877766542 3444555 4889998765 4555665555565554 47899999998743 1
Q ss_pred CCCCCEEEEccchhh------hCHhhHHH-----------HHHHHhcccccCcEEEEEee
Q 048309 134 AKKYDRIISCEMMEA------VGHEYMEE-----------YFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 134 ~~~fD~I~~~~~l~~------~~~~~~~~-----------~l~~~~~~LkpgG~l~~~~~ 176 (288)
-+..|+++.+..+.. .+.++... +.+.+...++++|.++....
T Consensus 94 ~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS 153 (270)
T 3is3_A 94 FGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSS 153 (270)
T ss_dssp HSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECC
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeC
Confidence 147899987654322 23233322 34566677777888877544
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=86.50 E-value=4.3 Score=34.25 Aligned_cols=96 Identities=19% Similarity=0.277 Sum_probs=58.9
Q ss_pred CEEEEECCcc-cH-HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHc---------CCC--------CceEEEEcccCCC
Q 048309 71 HEVLEIGCGW-GT-FAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEA---------GLQ--------DHIRLYLCDYRQL 131 (288)
Q Consensus 71 ~~vLDiGcG~-G~-~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~---------g~~--------~~v~~~~~d~~~~ 131 (288)
.+|.=||+|. |. ++..++. .+.+|+++|.+++.++.+.+.+... ++. .++.. ..|..+
T Consensus 5 ~kV~VIGaG~mG~~iA~~la~-~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~-~~~~~~- 81 (283)
T 4e12_A 5 TNVTVLGTGVLGSQIAFQTAF-HGFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRY-SDDLAQ- 81 (283)
T ss_dssp CEEEEECCSHHHHHHHHHHHH-TTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEE-ESCHHH-
T ss_pred CEEEEECCCHHHHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEE-eCCHHH-
Confidence 4788899986 43 3444454 4889999999999988877653221 110 01222 222222
Q ss_pred CCCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEE
Q 048309 132 PKAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVL 173 (288)
Q Consensus 132 ~~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~ 173 (288)
.-...|+|+..-. +.. +....+++++...++|+..++-
T Consensus 82 -~~~~aDlVi~av~-~~~--~~~~~v~~~l~~~~~~~~il~s 119 (283)
T 4e12_A 82 -AVKDADLVIEAVP-ESL--DLKRDIYTKLGELAPAKTIFAT 119 (283)
T ss_dssp -HTTTCSEEEECCC-SCH--HHHHHHHHHHHHHSCTTCEEEE
T ss_pred -HhccCCEEEEecc-CcH--HHHHHHHHHHHhhCCCCcEEEE
Confidence 1256899886532 111 3557788888888988876553
|
| >3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A* | Back alignment and structure |
|---|
Probab=85.24 E-value=6.8 Score=33.14 Aligned_cols=104 Identities=15% Similarity=0.104 Sum_probs=66.5
Q ss_pred CCCEEEEECCc----ccH-HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-----------
Q 048309 69 KEHEVLEIGCG----WGT-FAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP----------- 132 (288)
Q Consensus 69 ~~~~vLDiGcG----~G~-~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~----------- 132 (288)
.++++|-.|++ .|. ++..|++. +++|+.++.++...+...+..+..+ ++.++.+|+.+..
T Consensus 29 ~~k~vlVTGasg~~GIG~~ia~~la~~-G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~Dv~d~~~v~~~~~~~~~ 104 (296)
T 3k31_A 29 EGKKGVIIGVANDKSLAWGIAKAVCAQ-GAEVALTYLSETFKKRVDPLAESLG---VKLTVPCDVSDAESVDNMFKVLAE 104 (296)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHHHHHHHT---CCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCCHHHHHHHHHHHC-CCEEEEEeCChHHHHHHHHHHHhcC---CeEEEEcCCCCHHHHHHHHHHHHH
Confidence 46789989874 343 45555554 8899999998765555555555443 4688999998743
Q ss_pred CCCCCCEEEEccchh----------hhCHhhHHH-----------HHHHHhcccccCcEEEEEee
Q 048309 133 KAKKYDRIISCEMME----------AVGHEYMEE-----------YFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 133 ~~~~fD~I~~~~~l~----------~~~~~~~~~-----------~l~~~~~~LkpgG~l~~~~~ 176 (288)
.-+..|+++.+..+. ..+.++... +.+.+...++.+|.++....
T Consensus 105 ~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~isS 169 (296)
T 3k31_A 105 EWGSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILTLSY 169 (296)
T ss_dssp HHSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEEC
T ss_pred HcCCCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEEe
Confidence 115799999876432 122233322 34556677777888877543
|
| >3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=85.13 E-value=5.8 Score=34.09 Aligned_cols=92 Identities=18% Similarity=0.208 Sum_probs=55.6
Q ss_pred CCCEEEEECCcc-cH-HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCC---CceEEE-----EcccCCCCCCCCCC
Q 048309 69 KEHEVLEIGCGW-GT-FAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQ---DHIRLY-----LCDYRQLPKAKKYD 138 (288)
Q Consensus 69 ~~~~vLDiGcG~-G~-~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~---~~v~~~-----~~d~~~~~~~~~fD 138 (288)
...+|.=||+|. |. ++..|++ .+.+|+.+ .+++.++..++. |+. ....+. ..|.. ....+|
T Consensus 18 ~~~kI~IiGaGa~G~~~a~~L~~-~G~~V~l~-~~~~~~~~i~~~----g~~~~~~~~~~~~~~~~~~~~~---~~~~~D 88 (318)
T 3hwr_A 18 QGMKVAIMGAGAVGCYYGGMLAR-AGHEVILI-ARPQHVQAIEAT----GLRLETQSFDEQVKVSASSDPS---AVQGAD 88 (318)
T ss_dssp --CEEEEESCSHHHHHHHHHHHH-TTCEEEEE-CCHHHHHHHHHH----CEEEECSSCEEEECCEEESCGG---GGTTCS
T ss_pred cCCcEEEECcCHHHHHHHHHHHH-CCCeEEEE-EcHhHHHHHHhC----CeEEEcCCCcEEEeeeeeCCHH---HcCCCC
Confidence 346899999995 54 4555555 47899999 888877666543 220 000110 11111 225789
Q ss_pred EEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 139 RIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 139 ~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
+|+..-.- ....++++.+...++++..++..
T Consensus 89 ~vilavk~-----~~~~~~l~~l~~~l~~~~~iv~~ 119 (318)
T 3hwr_A 89 LVLFCVKS-----TDTQSAALAMKPALAKSALVLSL 119 (318)
T ss_dssp EEEECCCG-----GGHHHHHHHHTTTSCTTCEEEEE
T ss_pred EEEEEccc-----ccHHHHHHHHHHhcCCCCEEEEe
Confidence 98875332 34577888888899888766653
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=85.02 E-value=4.7 Score=32.99 Aligned_cols=75 Identities=15% Similarity=0.182 Sum_probs=54.4
Q ss_pred CCCEEEEECCcccH---HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-----------CC
Q 048309 69 KEHEVLEIGCGWGT---FAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-----------KA 134 (288)
Q Consensus 69 ~~~~vLDiGcG~G~---~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-----------~~ 134 (288)
.++++|-.|++.|. ++..+++ .+++|+.+|.+++..+...+.++..+ .++.++.+|+.+.. .-
T Consensus 8 ~~k~vlITGas~giG~~~a~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (253)
T 3qiv_A 8 ENKVGIVTGSGGGIGQAYAEALAR-EGAAVVVADINAEAAEAVAKQIVADG--GTAISVAVDVSDPESAKAMADRTLAEF 84 (253)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHH-CCCEEEEEcCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 46788888876542 3445555 48899999999998887777776654 47899999998743 11
Q ss_pred CCCCEEEEccch
Q 048309 135 KKYDRIISCEMM 146 (288)
Q Consensus 135 ~~fD~I~~~~~l 146 (288)
+..|+++.+..+
T Consensus 85 g~id~li~~Ag~ 96 (253)
T 3qiv_A 85 GGIDYLVNNAAI 96 (253)
T ss_dssp SCCCEEEECCCC
T ss_pred CCCCEEEECCCc
Confidence 479999987654
|
| >3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A | Back alignment and structure |
|---|
Probab=84.76 E-value=8 Score=32.44 Aligned_cols=88 Identities=19% Similarity=0.262 Sum_probs=53.7
Q ss_pred CEEEEECCcc-cH-HHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCEEEEccchh
Q 048309 71 HEVLEIGCGW-GT-FAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMME 147 (288)
Q Consensus 71 ~~vLDiGcG~-G~-~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~~~~~l~ 147 (288)
.+|.=||+|. |. ++..+++. .+.+|+++|.+++.++.+.+ .|.. .....|..+. -...|+|+..-..
T Consensus 7 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~----~g~~---~~~~~~~~~~--~~~aDvVilavp~- 76 (290)
T 3b1f_A 7 KTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALE----RGIV---DEATADFKVF--AALADVIILAVPI- 76 (290)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHH----TTSC---SEEESCTTTT--GGGCSEEEECSCH-
T ss_pred ceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHH----cCCc---ccccCCHHHh--hcCCCEEEEcCCH-
Confidence 5788899986 44 34445543 25799999999987765543 3431 1122333322 2468998875433
Q ss_pred hhCHhhHHHHHHHHhcc-cccCcEEE
Q 048309 148 AVGHEYMEEYFGCCESL-LAKDGLLV 172 (288)
Q Consensus 148 ~~~~~~~~~~l~~~~~~-LkpgG~l~ 172 (288)
.....+++++... ++++..++
T Consensus 77 ----~~~~~v~~~l~~~~l~~~~ivi 98 (290)
T 3b1f_A 77 ----KKTIDFIKILADLDLKEDVIIT 98 (290)
T ss_dssp ----HHHHHHHHHHHTSCCCTTCEEE
T ss_pred ----HHHHHHHHHHHhcCCCCCCEEE
Confidence 3346677778777 88776544
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=83.99 E-value=13 Score=29.27 Aligned_cols=94 Identities=13% Similarity=0.109 Sum_probs=54.3
Q ss_pred EEEEECCcccHHHHHHHHc---cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC--CCCCCCEEEEccch
Q 048309 72 EVLEIGCGWGTFAIEVVRQ---TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP--KAKKYDRIISCEMM 146 (288)
Q Consensus 72 ~vLDiGcG~G~~~~~la~~---~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~--~~~~fD~I~~~~~l 146 (288)
+||=.|+ +|.++..+++. .+.+|++++-++...... . ..+++++.+|+.+.. .-+.+|+|+.....
T Consensus 2 kilVtGa-tG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~------~--~~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~ 72 (224)
T 3h2s_A 2 KIAVLGA-TGRAGSAIVAEARRRGHEVLAVVRDPQKAADR------L--GATVATLVKEPLVLTEADLDSVDAVVDALSV 72 (224)
T ss_dssp EEEEETT-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH------T--CTTSEEEECCGGGCCHHHHTTCSEEEECCCC
T ss_pred EEEEEcC-CCHHHHHHHHHHHHCCCEEEEEEecccccccc------c--CCCceEEecccccccHhhcccCCEEEECCcc
Confidence 5776774 44444444332 478999999988654322 1 136899999998765 23578999987654
Q ss_pred hhh--CHhhHHHHHHHHhcccc-cCcEEEEE
Q 048309 147 EAV--GHEYMEEYFGCCESLLA-KDGLLVLQ 174 (288)
Q Consensus 147 ~~~--~~~~~~~~l~~~~~~Lk-pgG~l~~~ 174 (288)
.+- ....-......+.+.++ .|+.+++.
T Consensus 73 ~~~~~~~~~n~~~~~~l~~a~~~~~~~~v~~ 103 (224)
T 3h2s_A 73 PWGSGRGYLHLDFATHLVSLLRNSDTLAVFI 103 (224)
T ss_dssp CTTSSCTHHHHHHHHHHHHTCTTCCCEEEEE
T ss_pred CCCcchhhHHHHHHHHHHHHHHHcCCcEEEE
Confidence 311 00112223344444444 34566554
|
| >3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=83.72 E-value=4.8 Score=33.45 Aligned_cols=77 Identities=18% Similarity=0.113 Sum_probs=52.3
Q ss_pred CCCEEEEECCcccH---HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-------CCCCCC
Q 048309 69 KEHEVLEIGCGWGT---FAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-------KAKKYD 138 (288)
Q Consensus 69 ~~~~vLDiGcG~G~---~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-------~~~~fD 138 (288)
.++++|-.|++.|. .+..+++ .+++|+.+|.+++..+...+.+...+....+.++..|+.+.. .-+..|
T Consensus 9 ~~k~~lVTGas~gIG~aia~~l~~-~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~id 87 (267)
T 3t4x_A 9 KGKTALVTGSTAGIGKAIATSLVA-EGANVLINGRREENVNETIKEIRAQYPDAILQPVVADLGTEQGCQDVIEKYPKVD 87 (267)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHH-TTCEEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTSHHHHHHHHHHCCCCS
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCCHHHHHHHHHhcCCCC
Confidence 46788877765442 3344444 488999999999887776666655543346788899987642 225789
Q ss_pred EEEEccch
Q 048309 139 RIISCEMM 146 (288)
Q Consensus 139 ~I~~~~~l 146 (288)
+++.+..+
T Consensus 88 ~lv~nAg~ 95 (267)
T 3t4x_A 88 ILINNLGI 95 (267)
T ss_dssp EEEECCCC
T ss_pred EEEECCCC
Confidence 99987543
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
|---|
Probab=83.71 E-value=7.7 Score=33.51 Aligned_cols=92 Identities=17% Similarity=0.177 Sum_probs=53.4
Q ss_pred CEEEEECCcc-cH-HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCC---CceE------EEEcccCCCCCCCCCCE
Q 048309 71 HEVLEIGCGW-GT-FAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQ---DHIR------LYLCDYRQLPKAKKYDR 139 (288)
Q Consensus 71 ~~vLDiGcG~-G~-~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~---~~v~------~~~~d~~~~~~~~~fD~ 139 (288)
.+|.=||+|. |. ++..+++ .+.+|+++|.+++.++..++.. ++. .... ....|..+ .-..+|+
T Consensus 5 mki~iiG~G~~G~~~a~~L~~-~g~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~D~ 78 (359)
T 1bg6_A 5 KTYAVLGLGNGGHAFAAYLAL-KGQSVLAWDIDAQRIKEIQDRG---AIIAEGPGLAGTAHPDLLTSDIGL--AVKDADV 78 (359)
T ss_dssp CEEEEECCSHHHHHHHHHHHH-TTCEEEEECSCHHHHHHHHHHT---SEEEESSSCCEEECCSEEESCHHH--HHTTCSE
T ss_pred CeEEEECCCHHHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHhcC---CeEEeccccccccccceecCCHHH--HHhcCCE
Confidence 5788999986 43 3444554 4789999999988776554431 110 0000 01111111 1246898
Q ss_pred EEEccchhhhCHhhHHHHHHHHhcccccCcEEEE
Q 048309 140 IISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVL 173 (288)
Q Consensus 140 I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~ 173 (288)
|+..-.-. ...++++.+...+++|..++.
T Consensus 79 vi~~v~~~-----~~~~~~~~l~~~l~~~~~vv~ 107 (359)
T 1bg6_A 79 ILIVVPAI-----HHASIAANIASYISEGQLIIL 107 (359)
T ss_dssp EEECSCGG-----GHHHHHHHHGGGCCTTCEEEE
T ss_pred EEEeCCch-----HHHHHHHHHHHhCCCCCEEEE
Confidence 88754322 235677888888888775554
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=83.68 E-value=17 Score=34.87 Aligned_cols=108 Identities=10% Similarity=0.241 Sum_probs=71.4
Q ss_pred CCCEEEEECCcccHHHHHHHHc-c--------CCEEEEEcCCHHHHHHHHHHHHHcC--------------CC-------
Q 048309 69 KEHEVLEIGCGWGTFAIEVVRQ-T--------GCNYTGITLSAEQMKYAEMKVNEAG--------------LQ------- 118 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~~la~~-~--------~~~v~giD~s~~~~~~a~~~~~~~g--------------~~------- 118 (288)
+...|+-+|||.=.....+... + +..++=||. |+.++.=++.++..+ .+
T Consensus 107 ~~~qvV~LGaGlDtr~~Rl~~~~~~~~~~~~~~~~~~EvD~-p~v~~~K~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~ 185 (695)
T 2zwa_A 107 KKIVVVNLGCGYDPLPFQLLDTNNIQSQQYHDRVSFIDIDY-SDLLKIKIELIKTIPELSKIIGLSEDKDYVDDSNVDFL 185 (695)
T ss_dssp SEEEEEEETCTTCCHHHHHHCTTCGGGGGGSSSEEEEEEEC-HHHHHHHHHHHHHCHHHHHHTTCCSSCSSCSCTTCCCE
T ss_pred CCcEEEEcccccCcceeeeeccCcccccccCCCCEEEECcc-HHHHHHHHHHHHcChHHHHhhccccccccccccccccc
Confidence 3568999999988877777553 2 345666665 555554444454211 00
Q ss_pred --CceEEEEcccCCCC------C-----C-CCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCC
Q 048309 119 --DHIRLYLCDYRQLP------K-----A-KKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTP 179 (288)
Q Consensus 119 --~~v~~~~~d~~~~~------~-----~-~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 179 (288)
++...+..|+.+.. . + ...-++++-+++.+++++...++++.+.+. ++|.+++.+...+
T Consensus 186 ~s~~y~~v~~Dl~~~~~~~~~l~~~g~~d~~~ptl~i~Egvl~Yl~~~~~~~ll~~~~~~--~~~~~~~~e~~~~ 258 (695)
T 2zwa_A 186 TTPKYLARPCDLNDSKMFSTLLNECQLYDPNVVKVFVAEVSLAYMKPERSDSIIEATSKM--ENSHFIILEQLIP 258 (695)
T ss_dssp ECSSEEEEECCTTCHHHHHHHHHHTTTTCTTEEEEEEEESSGGGSCHHHHHHHHHHHHTS--SSEEEEEEEECCT
T ss_pred cCCCeeEEeCcCCCcHHHHHHHhhccCCCCCCCEEEeeeeEEEEcCHHHHHHHHHHHhhC--CCceEEEEEeecC
Confidence 36889999998742 0 1 223367788899999999999999999864 6777776554444
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=83.63 E-value=5.8 Score=33.64 Aligned_cols=75 Identities=19% Similarity=0.185 Sum_probs=55.3
Q ss_pred CCCEEEEECCcccH---HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-----------CC
Q 048309 69 KEHEVLEIGCGWGT---FAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-----------KA 134 (288)
Q Consensus 69 ~~~~vLDiGcG~G~---~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-----------~~ 134 (288)
.++++|-.|++.|. ++..+++ .+++|++++.+++.++.+.+.++..+ .++.++..|+.+.. ..
T Consensus 30 ~gk~vlVTGas~gIG~~la~~l~~-~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 106 (301)
T 3tjr_A 30 DGRAAVVTGGASGIGLATATEFAR-RGARLVLSDVDQPALEQAVNGLRGQG--FDAHGVVCDVRHLDEMVRLADEAFRLL 106 (301)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHhC
Confidence 56789988877542 3444555 48899999999998888777777665 36899999998743 11
Q ss_pred CCCCEEEEccch
Q 048309 135 KKYDRIISCEMM 146 (288)
Q Consensus 135 ~~fD~I~~~~~l 146 (288)
+..|+++.+..+
T Consensus 107 g~id~lvnnAg~ 118 (301)
T 3tjr_A 107 GGVDVVFSNAGI 118 (301)
T ss_dssp SSCSEEEECCCC
T ss_pred CCCCEEEECCCc
Confidence 479999987543
|
| >4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=83.63 E-value=11 Score=31.25 Aligned_cols=72 Identities=14% Similarity=0.189 Sum_probs=48.3
Q ss_pred CCCEEEEECCcccH---HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC------CCCCCCE
Q 048309 69 KEHEVLEIGCGWGT---FAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP------KAKKYDR 139 (288)
Q Consensus 69 ~~~~vLDiGcG~G~---~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~------~~~~fD~ 139 (288)
.|+.+|--|.+.|. .+..+++ .|++|+.+|.+.. +.+.+.++..| .++..+..|+.+.. ..+..|+
T Consensus 8 ~GKvalVTGas~GIG~aiA~~la~-~Ga~Vvi~~r~~~--~~~~~~~~~~g--~~~~~~~~Dv~d~~~v~~~~~~g~iDi 82 (247)
T 4hp8_A 8 EGRKALVTGANTGLGQAIAVGLAA-AGAEVVCAARRAP--DETLDIIAKDG--GNASALLIDFADPLAAKDSFTDAGFDI 82 (247)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHH-TTCEEEEEESSCC--HHHHHHHHHTT--CCEEEEECCTTSTTTTTTSSTTTCCCE
T ss_pred CCCEEEEeCcCCHHHHHHHHHHHH-cCCEEEEEeCCcH--HHHHHHHHHhC--CcEEEEEccCCCHHHHHHHHHhCCCCE
Confidence 57788877766653 3455555 4899999998743 23334445555 46899999997743 3467999
Q ss_pred EEEccc
Q 048309 140 IISCEM 145 (288)
Q Consensus 140 I~~~~~ 145 (288)
++.+..
T Consensus 83 LVNNAG 88 (247)
T 4hp8_A 83 LVNNAG 88 (247)
T ss_dssp EEECCC
T ss_pred EEECCC
Confidence 998653
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=83.62 E-value=4.2 Score=33.02 Aligned_cols=89 Identities=9% Similarity=0.012 Sum_probs=56.2
Q ss_pred CCCEEEEECCcccHHHHHHHHc---cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-----CCCCCCEE
Q 048309 69 KEHEVLEIGCGWGTFAIEVVRQ---TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-----KAKKYDRI 140 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~~la~~---~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-----~~~~fD~I 140 (288)
...+|+=+|+| ..+..+++. .+. |+++|.+++.++.++ . .+.++.+|..+.. .-..+|+|
T Consensus 8 ~~~~viI~G~G--~~G~~la~~L~~~g~-v~vid~~~~~~~~~~-----~----~~~~i~gd~~~~~~l~~a~i~~ad~v 75 (234)
T 2aef_A 8 KSRHVVICGWS--ESTLECLRELRGSEV-FVLAEDENVRKKVLR-----S----GANFVHGDPTRVSDLEKANVRGARAV 75 (234)
T ss_dssp --CEEEEESCC--HHHHHHHHHSTTSEE-EEEESCGGGHHHHHH-----T----TCEEEESCTTCHHHHHHTTCTTCSEE
T ss_pred CCCEEEEECCC--hHHHHHHHHHHhCCe-EEEEECCHHHHHHHh-----c----CCeEEEcCCCCHHHHHhcCcchhcEE
Confidence 34588889885 555555554 356 999999988765443 2 3688999987643 23578998
Q ss_pred EEccchhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 141 ISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 141 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
++...- ...........+.+.|+..++..
T Consensus 76 i~~~~~-----d~~n~~~~~~a~~~~~~~~iia~ 104 (234)
T 2aef_A 76 IVDLES-----DSETIHCILGIRKIDESVRIIAE 104 (234)
T ss_dssp EECCSC-----HHHHHHHHHHHHHHCSSSEEEEE
T ss_pred EEcCCC-----cHHHHHHHHHHHHHCCCCeEEEE
Confidence 875321 22333444555667777677664
|
| >3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A* | Back alignment and structure |
|---|
Probab=83.61 E-value=3.3 Score=41.66 Aligned_cols=74 Identities=11% Similarity=0.132 Sum_probs=52.6
Q ss_pred CCCEEEEECCcccHHHHHHHHccCC--EEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCC----------------
Q 048309 69 KEHEVLEIGCGWGTFAIEVVRQTGC--NYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQ---------------- 130 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~~la~~~~~--~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~---------------- 130 (288)
...+++|+-||.|+++.-+.+. |. .+.++|+++.+++.-+.+.. ...++.+|+.+
T Consensus 539 ~~l~~iDLFaG~GGlslGl~~A-G~~~vv~avEid~~A~~ty~~N~p------~~~~~~~DI~~l~~~~~~~di~~~~~~ 611 (1002)
T 3swr_A 539 PKLRTLDVFSGCGGLSEGFHQA-GISDTLWAIEMWDPAAQAFRLNNP------GSTVFTEDCNILLKLVMAGETTNSRGQ 611 (1002)
T ss_dssp CCEEEEEESCTTSHHHHHHHHH-TSEEEEEEECSSHHHHHHHHHHCT------TSEEECSCHHHHHHHHHHTCSBCTTCC
T ss_pred CCCeEEEeccCccHHHHHHHHC-CCCceEEEEECCHHHHHHHHHhCC------CCccccccHHHHhhhccchhhhhhhhh
Confidence 3458999999999999888765 54 57799999998876666542 34566666422
Q ss_pred -CCCCCCCCEEEEccchhhh
Q 048309 131 -LPKAKKYDRIISCEMMEAV 149 (288)
Q Consensus 131 -~~~~~~fD~I~~~~~l~~~ 149 (288)
++..+.+|+|+.......+
T Consensus 612 ~lp~~~~vDll~GGpPCQ~F 631 (1002)
T 3swr_A 612 RLPQKGDVEMLCGGPPCQGF 631 (1002)
T ss_dssp BCCCTTTCSEEEECCCCTTC
T ss_pred hcccCCCeeEEEEcCCCcch
Confidence 2223579999987765544
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=83.56 E-value=2.2 Score=31.28 Aligned_cols=68 Identities=10% Similarity=0.198 Sum_probs=41.0
Q ss_pred CCEEEEECCcc-cHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-----CCCCCCEEEEc
Q 048309 70 EHEVLEIGCGW-GTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-----KAKKYDRIISC 143 (288)
Q Consensus 70 ~~~vLDiGcG~-G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-----~~~~fD~I~~~ 143 (288)
+.+|+=+|+|. |..........+.+|+++|.+++..+.++ .. ...++.+|..+.. ....+|+|+..
T Consensus 6 ~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~~~----~~----~~~~~~~d~~~~~~l~~~~~~~~d~vi~~ 77 (144)
T 2hmt_A 6 NKQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYA----SY----ATHAVIANATEENELLSLGIRNFEYVIVA 77 (144)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHTTT----TT----CSEEEECCTTCHHHHHTTTGGGCSEEEEC
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH----Hh----CCEEEEeCCCCHHHHHhcCCCCCCEEEEC
Confidence 45789999864 44333322224778999999886654332 11 2356777765432 13568999876
Q ss_pred cc
Q 048309 144 EM 145 (288)
Q Consensus 144 ~~ 145 (288)
..
T Consensus 78 ~~ 79 (144)
T 2hmt_A 78 IG 79 (144)
T ss_dssp CC
T ss_pred CC
Confidence 43
|
| >2hwk_A Helicase NSP2; rossman fold, alpha/beta/alpha, multi-domain, hydrolase; 2.45A {Venezuelan equine encephalitis virus} | Back alignment and structure |
|---|
Probab=83.42 E-value=1.8 Score=36.79 Aligned_cols=59 Identities=17% Similarity=-0.019 Sum_probs=39.8
Q ss_pred EEE-EcccCCCCCCCCCCEEEEccc----hhh----hCH-hhHHHHHHHHhcccccCcEEEEEeecCCC
Q 048309 122 RLY-LCDYRQLPKAKKYDRIISCEM----MEA----VGH-EYMEEYFGCCESLLAKDGLLVLQFSSTPD 180 (288)
Q Consensus 122 ~~~-~~d~~~~~~~~~fD~I~~~~~----l~~----~~~-~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 180 (288)
+++ .+|+......+++|+|++.-. -+| ... .-+.-+++.+.++|+|||.+++..+...+
T Consensus 191 t~~~~lDfg~p~~~~k~DvV~SDMApn~sGh~yqQC~DHarii~Lal~fA~~vLkPGGtfV~KvyggaD 259 (320)
T 2hwk_A 191 TFRARLDLGIPGDVPKYDIIFVNVRTPYKYHHYQQCEDHAIKLSMLTKKACLHLNPGGTCVSIGYGYAD 259 (320)
T ss_dssp SEECCGGGCSCTTSCCEEEEEEECCCCCCSCHHHHHHHHHHHHHHTHHHHGGGEEEEEEEEEEECCCCS
T ss_pred eeecccccCCccccCcCCEEEEcCCCCCCCccccccchHHHHHHHHHHHHHHhcCCCceEEEEEecCCc
Confidence 344 677776554477999999632 233 100 22334678889999999999998877664
|
| >3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* | Back alignment and structure |
|---|
Probab=83.29 E-value=16 Score=35.52 Aligned_cols=100 Identities=19% Similarity=0.308 Sum_probs=66.1
Q ss_pred CEEEEECCcc-c-HHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHc-----------C---CCCceEEEEcccCCCCCC
Q 048309 71 HEVLEIGCGW-G-TFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEA-----------G---LQDHIRLYLCDYRQLPKA 134 (288)
Q Consensus 71 ~~vLDiGcG~-G-~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~-----------g---~~~~v~~~~~d~~~~~~~ 134 (288)
.+|-=||+|+ | ..+..++. .|..|+.+|++++.++.+++.+... . ...+++ ...|..++
T Consensus 317 ~~v~ViGaG~MG~gIA~~~a~-aG~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~l--- 391 (742)
T 3zwc_A 317 SSVGVLGLGTMGRGIAISFAR-VGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLR-FSSSTKEL--- 391 (742)
T ss_dssp CEEEEECCSHHHHHHHHHHHT-TTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEE-EESCGGGG---
T ss_pred cEEEEEcccHHHHHHHHHHHh-CCCchhcccchHhhhhhHHHHHHHHHHHHHHhccccchhhhhhhhc-ccCcHHHH---
Confidence 5889999998 3 34455555 5899999999999998887655421 0 001111 12222222
Q ss_pred CCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecC
Q 048309 135 KKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSST 178 (288)
Q Consensus 135 ~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 178 (288)
...|+|+= .+++-+ +-..++++++-.+++|+..|.-++.+.
T Consensus 392 ~~aDlVIE-AV~E~l--~iK~~vf~~le~~~~~~aIlASNTSsl 432 (742)
T 3zwc_A 392 STVDLVVE-AVFEDM--NLKKKVFAELSALCKPGAFLCTNTSAL 432 (742)
T ss_dssp GSCSEEEE-CCCSCH--HHHHHHHHHHHHHSCTTCEEEECCSSS
T ss_pred hhCCEEEE-eccccH--HHHHHHHHHHhhcCCCCceEEecCCcC
Confidence 45788773 456666 778899999999999998777655443
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=83.26 E-value=0.61 Score=40.57 Aligned_cols=56 Identities=14% Similarity=0.235 Sum_probs=40.3
Q ss_pred ceEEE-EcccCCCC---CCCCCCEEEEccchhhh--------C-HhhHHHHHHHHhcccccCcEEEEEe
Q 048309 120 HIRLY-LCDYRQLP---KAKKYDRIISCEMMEAV--------G-HEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 120 ~v~~~-~~d~~~~~---~~~~fD~I~~~~~l~~~--------~-~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
..+++ ++|..+.. +++++|+|++......- . .......+.++.++|+|||.+++..
T Consensus 38 ~~~l~i~gD~l~~L~~l~~~svDlI~tDPPY~~~~d~~~~~~~~~~~~~~~l~~~~rvLk~~G~i~i~~ 106 (319)
T 1eg2_A 38 TRHVYDVCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFG 106 (319)
T ss_dssp EEEEEEECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cceEEECCcHHHHHHhCccCCcCEEEECCCCCCCCCCccCHHHHHHHHHHHHHHHHHHcCCCeEEEEEc
Confidence 46777 89986532 45789999998654311 0 0245677888999999999999864
|
| >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=83.25 E-value=5.8 Score=34.83 Aligned_cols=95 Identities=15% Similarity=0.258 Sum_probs=57.8
Q ss_pred CCEEEEECCcc-cH-HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHH------cCCCCceEEEEcccCCCCCCCCCCEEE
Q 048309 70 EHEVLEIGCGW-GT-FAIEVVRQTGCNYTGITLSAEQMKYAEMKVNE------AGLQDHIRLYLCDYRQLPKAKKYDRII 141 (288)
Q Consensus 70 ~~~vLDiGcG~-G~-~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~------~g~~~~v~~~~~d~~~~~~~~~fD~I~ 141 (288)
..+|.=||+|. |. ++..+++ .+.+|+.+|.+++.++..++.-.. ..++.++.+. .|..+ .-...|+|+
T Consensus 29 ~mkI~VIGaG~mG~alA~~La~-~G~~V~l~~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~t-~d~~e--a~~~aDvVi 104 (356)
T 3k96_A 29 KHPIAILGAGSWGTALALVLAR-KGQKVRLWSYESDHVDEMQAEGVNNRYLPNYPFPETLKAY-CDLKA--SLEGVTDIL 104 (356)
T ss_dssp CSCEEEECCSHHHHHHHHHHHT-TTCCEEEECSCHHHHHHHHHHSSBTTTBTTCCCCTTEEEE-SCHHH--HHTTCCEEE
T ss_pred CCeEEEECccHHHHHHHHHHHH-CCCeEEEEeCCHHHHHHHHHcCCCcccCCCCccCCCeEEE-CCHHH--HHhcCCEEE
Confidence 35788999985 54 4445554 477899999999887666543110 0111122221 22211 114689988
Q ss_pred EccchhhhCHhhHHHHHHHHhcccccCcEEEE
Q 048309 142 SCEMMEAVGHEYMEEYFGCCESLLAKDGLLVL 173 (288)
Q Consensus 142 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~ 173 (288)
..- +.....++++++...++++..++.
T Consensus 105 laV-----p~~~~~~vl~~i~~~l~~~~ivvs 131 (356)
T 3k96_A 105 IVV-----PSFAFHEVITRMKPLIDAKTRIAW 131 (356)
T ss_dssp ECC-----CHHHHHHHHHHHGGGCCTTCEEEE
T ss_pred ECC-----CHHHHHHHHHHHHHhcCCCCEEEE
Confidence 753 334567888999999988876554
|
| >4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=83.20 E-value=6 Score=34.01 Aligned_cols=88 Identities=13% Similarity=0.051 Sum_probs=49.1
Q ss_pred CEEEEECCcc-cH-HHHHHHHccC-CEEEEEcCCHH---HHHHHHHHHHHcCCCCceEEEEc-ccCCCCCCCCCCEEEEc
Q 048309 71 HEVLEIGCGW-GT-FAIEVVRQTG-CNYTGITLSAE---QMKYAEMKVNEAGLQDHIRLYLC-DYRQLPKAKKYDRIISC 143 (288)
Q Consensus 71 ~~vLDiGcG~-G~-~~~~la~~~~-~~v~giD~s~~---~~~~a~~~~~~~g~~~~v~~~~~-d~~~~~~~~~fD~I~~~ 143 (288)
.+|.=||+|. |. ++..+++ .+ .+|++.|.+++ ..+...+.+...| + .. +..+. -...|+|+..
T Consensus 25 m~IgvIG~G~mG~~lA~~L~~-~G~~~V~~~dr~~~~~~~~~~~~~~~~~~g----~---~~~s~~e~--~~~aDvVi~a 94 (317)
T 4ezb_A 25 TTIAFIGFGEAAQSIAGGLGG-RNAARLAAYDLRFNDPAASGALRARAAELG----V---EPLDDVAG--IACADVVLSL 94 (317)
T ss_dssp CEEEEECCSHHHHHHHHHHHT-TTCSEEEEECGGGGCTTTHHHHHHHHHHTT----C---EEESSGGG--GGGCSEEEEC
T ss_pred CeEEEECccHHHHHHHHHHHH-cCCCeEEEEeCCCccccchHHHHHHHHHCC----C---CCCCHHHH--HhcCCEEEEe
Confidence 5788899985 44 3444444 47 89999999872 1111222223333 2 22 33322 2457888875
Q ss_pred cchhhhCHhhHHHHHHHHhcccccCcEEEE
Q 048309 144 EMMEAVGHEYMEEYFGCCESLLAKDGLLVL 173 (288)
Q Consensus 144 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~ 173 (288)
-.- ....+.++.+...|++|..++-
T Consensus 95 vp~-----~~~~~~~~~i~~~l~~~~ivv~ 119 (317)
T 4ezb_A 95 VVG-----AATKAVAASAAPHLSDEAVFID 119 (317)
T ss_dssp CCG-----GGHHHHHHHHGGGCCTTCEEEE
T ss_pred cCC-----HHHHHHHHHHHhhcCCCCEEEE
Confidence 332 2233445777778887765543
|
| >1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=83.12 E-value=6.1 Score=33.01 Aligned_cols=76 Identities=18% Similarity=0.220 Sum_probs=50.1
Q ss_pred CCCEEEEECCcccH---HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCC-CCceEEEEcccCCCC-----------C
Q 048309 69 KEHEVLEIGCGWGT---FAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGL-QDHIRLYLCDYRQLP-----------K 133 (288)
Q Consensus 69 ~~~~vLDiGcG~G~---~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~-~~~v~~~~~d~~~~~-----------~ 133 (288)
.++++|-.|++.|. ++..+++ .+++|++++.+++..+...+.+...+. ..++.++.+|+.+.. .
T Consensus 5 ~~k~vlVTGas~gIG~~ia~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 83 (280)
T 1xkq_A 5 SNKTVIITGSSNGIGRTTAILFAQ-EGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQ 83 (280)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcceEEEEecCCCHHHHHHHHHHHHHh
Confidence 45678877755432 3344444 488999999998877766655554331 116899999998743 0
Q ss_pred CCCCCEEEEccc
Q 048309 134 AKKYDRIISCEM 145 (288)
Q Consensus 134 ~~~fD~I~~~~~ 145 (288)
-+..|+++.+..
T Consensus 84 ~g~iD~lv~nAg 95 (280)
T 1xkq_A 84 FGKIDVLVNNAG 95 (280)
T ss_dssp HSCCCEEEECCC
T ss_pred cCCCCEEEECCC
Confidence 147899998754
|
| >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=83.11 E-value=6.5 Score=32.72 Aligned_cols=76 Identities=18% Similarity=0.234 Sum_probs=52.2
Q ss_pred CCCEEEEECCcccH---HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-----C------C
Q 048309 69 KEHEVLEIGCGWGT---FAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-----K------A 134 (288)
Q Consensus 69 ~~~~vLDiGcG~G~---~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-----~------~ 134 (288)
.++++|-.|++.|. ++..|++ .+++|++++.++...+...+.++..+.+.++.++.+|+.+.. . .
T Consensus 31 ~~k~vlVTGasggIG~~la~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 109 (279)
T 1xg5_A 31 RDRLALVTGASGGIGAAVARALVQ-QGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQH 109 (279)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHH-CCCEEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHhC
Confidence 46788878765432 2334444 488999999998877776666666655456888999998743 0 1
Q ss_pred CCCCEEEEccc
Q 048309 135 KKYDRIISCEM 145 (288)
Q Consensus 135 ~~fD~I~~~~~ 145 (288)
+.+|+++.+..
T Consensus 110 g~iD~vi~~Ag 120 (279)
T 1xg5_A 110 SGVDICINNAG 120 (279)
T ss_dssp CCCSEEEECCC
T ss_pred CCCCEEEECCC
Confidence 37999988654
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=83.08 E-value=7.1 Score=32.30 Aligned_cols=73 Identities=16% Similarity=0.169 Sum_probs=54.5
Q ss_pred CCCEEEEECCcccH---HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-----------CC
Q 048309 69 KEHEVLEIGCGWGT---FAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-----------KA 134 (288)
Q Consensus 69 ~~~~vLDiGcG~G~---~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-----------~~ 134 (288)
.++++|-.|++.|. .+..++++ +++|+.++.+++.++...+.+...+ .++.++..|+.+.. .-
T Consensus 10 ~~k~vlVTGas~gIG~aia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 86 (264)
T 3ucx_A 10 TDKVVVISGVGPALGTTLARRCAEQ-GADLVLAARTVERLEDVAKQVTDTG--RRALSVGTDITDDAQVAHLVDETMKAY 86 (264)
T ss_dssp TTCEEEEESCCTTHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCcHHHHHHHHHHHHC-cCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 56789988876552 34555554 8899999999998887777776665 47899999998743 12
Q ss_pred CCCCEEEEcc
Q 048309 135 KKYDRIISCE 144 (288)
Q Consensus 135 ~~fD~I~~~~ 144 (288)
+..|+++.+.
T Consensus 87 g~id~lv~nA 96 (264)
T 3ucx_A 87 GRVDVVINNA 96 (264)
T ss_dssp SCCSEEEECC
T ss_pred CCCcEEEECC
Confidence 5799999865
|
| >1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=82.85 E-value=8.4 Score=32.38 Aligned_cols=76 Identities=14% Similarity=0.140 Sum_probs=50.1
Q ss_pred CCCEEEEECCcccHHHHHHHHc---cCCEEEEEcCCHHHHHHHHHHHHHcC---CCCceEEEEcccCCCC-----C----
Q 048309 69 KEHEVLEIGCGWGTFAIEVVRQ---TGCNYTGITLSAEQMKYAEMKVNEAG---LQDHIRLYLCDYRQLP-----K---- 133 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~~la~~---~~~~v~giD~s~~~~~~a~~~~~~~g---~~~~v~~~~~d~~~~~-----~---- 133 (288)
.+++||-.|++ |.++..+++. .+++|++++.+++..+...+.+.... ...++.++.+|+.+.. .
T Consensus 17 ~~k~vlVTGas-ggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~ 95 (303)
T 1yxm_A 17 QGQVAIVTGGA-TGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKSTL 95 (303)
T ss_dssp TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEECCC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhccccCCccEEEEecCCCCHHHHHHHHHHHH
Confidence 46788888865 4444444332 47899999999887766655554410 1146899999998743 1
Q ss_pred --CCCCCEEEEccc
Q 048309 134 --AKKYDRIISCEM 145 (288)
Q Consensus 134 --~~~fD~I~~~~~ 145 (288)
-+..|+++.+..
T Consensus 96 ~~~g~id~li~~Ag 109 (303)
T 1yxm_A 96 DTFGKINFLVNNGG 109 (303)
T ss_dssp HHHSCCCEEEECCC
T ss_pred HHcCCCCEEEECCC
Confidence 136999998754
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=82.74 E-value=5.2 Score=34.33 Aligned_cols=77 Identities=9% Similarity=0.108 Sum_probs=55.1
Q ss_pred CCCEEEEECCcccH---HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-----------CC
Q 048309 69 KEHEVLEIGCGWGT---FAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-----------KA 134 (288)
Q Consensus 69 ~~~~vLDiGcG~G~---~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-----------~~ 134 (288)
.+++||-.|++.|. ++..|++ .|++|++++.+++..+.+.+.+...+...++.++..|+.+.. ..
T Consensus 7 ~~k~vlVTGas~gIG~~la~~l~~-~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 85 (319)
T 3ioy_A 7 AGRTAFVTGGANGVGIGLVRQLLN-QGCKVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVEARF 85 (319)
T ss_dssp TTCEEEEETTTSTHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEcCCchHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHHHhC
Confidence 46789988876543 3444555 488999999999988877777766553337899999998743 12
Q ss_pred CCCCEEEEccch
Q 048309 135 KKYDRIISCEMM 146 (288)
Q Consensus 135 ~~fD~I~~~~~l 146 (288)
+..|+++.+..+
T Consensus 86 g~id~lv~nAg~ 97 (319)
T 3ioy_A 86 GPVSILCNNAGV 97 (319)
T ss_dssp CCEEEEEECCCC
T ss_pred CCCCEEEECCCc
Confidence 578999987653
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=82.62 E-value=5.1 Score=32.32 Aligned_cols=70 Identities=14% Similarity=0.168 Sum_probs=44.8
Q ss_pred CCCEEEEECCcccHHHHHHHHc---cCCEEEEEcCCHHHHHHHHHHHHHcCCCCce-EEEEcccCC-CC-CCCCCCEEEE
Q 048309 69 KEHEVLEIGCGWGTFAIEVVRQ---TGCNYTGITLSAEQMKYAEMKVNEAGLQDHI-RLYLCDYRQ-LP-KAKKYDRIIS 142 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~~la~~---~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v-~~~~~d~~~-~~-~~~~fD~I~~ 142 (288)
.+++||=.|+ +|..+..+++. .+.+|++++-++...+... . .++ +++.+|+.+ +. .-+..|+|+.
T Consensus 20 ~~~~ilVtGa-tG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~----~----~~~~~~~~~Dl~~~~~~~~~~~D~vi~ 90 (236)
T 3e8x_A 20 QGMRVLVVGA-NGKVARYLLSELKNKGHEPVAMVRNEEQGPELR----E----RGASDIVVANLEEDFSHAFASIDAVVF 90 (236)
T ss_dssp -CCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHH----H----TTCSEEEECCTTSCCGGGGTTCSEEEE
T ss_pred CCCeEEEECC-CChHHHHHHHHHHhCCCeEEEEECChHHHHHHH----h----CCCceEEEcccHHHHHHHHcCCCEEEE
Confidence 4678998875 34444333332 4789999998877554322 2 257 899999962 22 3357999998
Q ss_pred ccchh
Q 048309 143 CEMME 147 (288)
Q Consensus 143 ~~~l~ 147 (288)
.....
T Consensus 91 ~ag~~ 95 (236)
T 3e8x_A 91 AAGSG 95 (236)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 76543
|
| >3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1} | Back alignment and structure |
|---|
Probab=82.58 E-value=6.8 Score=32.43 Aligned_cols=103 Identities=11% Similarity=0.118 Sum_probs=62.7
Q ss_pred CCCEEEEECCcccHHHHHHHHc---cCCEEEEEcCC---HHHHHHHHHHHHHcCCCCceEEEEcccCCCC----------
Q 048309 69 KEHEVLEIGCGWGTFAIEVVRQ---TGCNYTGITLS---AEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP---------- 132 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~~la~~---~~~~v~giD~s---~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~---------- 132 (288)
.++++|-.|++.| ++..+++. .+++|+.++.+ .+.++...+.++..+ .++.++..|+.+..
T Consensus 10 ~~k~vlVTGas~G-IG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~ 86 (262)
T 3ksu_A 10 KNKVIVIAGGIKN-LGALTAKTFALESVNLVLHYHQAKDSDTANKLKDELEDQG--AKVALYQSDLSNEEEVAKLFDFAE 86 (262)
T ss_dssp TTCEEEEETCSSH-HHHHHHHHHTTSSCEEEEEESCGGGHHHHHHHHHHHHTTT--CEEEEEECCCCSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEecCccCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHH
Confidence 4678888887654 33333332 47899998653 445555555555444 47899999998743
Q ss_pred -CCCCCCEEEEccchh------hhCHhhHHH-----------HHHHHhcccccCcEEEEE
Q 048309 133 -KAKKYDRIISCEMME------AVGHEYMEE-----------YFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 133 -~~~~fD~I~~~~~l~------~~~~~~~~~-----------~l~~~~~~LkpgG~l~~~ 174 (288)
.-+..|+++.+..+. ..+.++... +.+.+...|+++|.++..
T Consensus 87 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~i 146 (262)
T 3ksu_A 87 KEFGKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMNPNGHIITI 146 (262)
T ss_dssp HHHCSEEEEEECCCCCCSSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCEEEEE
Confidence 114789998865432 223333322 345556667778887764
|
| >3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=82.48 E-value=1.9 Score=39.29 Aligned_cols=89 Identities=9% Similarity=-0.010 Sum_probs=55.3
Q ss_pred CCCCCEEEEECCcc-cHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCEEEEccc
Q 048309 67 VSKEHEVLEIGCGW-GTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEM 145 (288)
Q Consensus 67 ~~~~~~vLDiGcG~-G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~~~~~ 145 (288)
...|++|+=+|+|. |......++..|++|+++|.++.....+. ..| +++ .++.+.- ...|+|+....
T Consensus 244 ~L~GKTVgVIG~G~IGr~vA~~lrafGa~Viv~d~dp~~a~~A~----~~G----~~v--v~LeElL--~~ADIVv~atg 311 (464)
T 3n58_A 244 MMAGKVAVVCGYGDVGKGSAQSLAGAGARVKVTEVDPICALQAA----MDG----FEV--VTLDDAA--STADIVVTTTG 311 (464)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHH----HTT----CEE--CCHHHHG--GGCSEEEECCS
T ss_pred cccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCcchhhHHH----hcC----cee--ccHHHHH--hhCCEEEECCC
Confidence 35788999999997 76666666667899999999986433322 223 232 2332222 46899887432
Q ss_pred hhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 146 MEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 146 l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
-.|+ +-++....+|+|++++-.
T Consensus 312 t~~l-------I~~e~l~~MK~GAILINv 333 (464)
T 3n58_A 312 NKDV-------ITIDHMRKMKDMCIVGNI 333 (464)
T ss_dssp SSSS-------BCHHHHHHSCTTEEEEEC
T ss_pred Cccc-------cCHHHHhcCCCCeEEEEc
Confidence 2222 112334778999987753
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=82.32 E-value=3.8 Score=33.83 Aligned_cols=74 Identities=18% Similarity=0.097 Sum_probs=54.2
Q ss_pred CCCEEEEECCcccH---HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-----------CC
Q 048309 69 KEHEVLEIGCGWGT---FAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-----------KA 134 (288)
Q Consensus 69 ~~~~vLDiGcG~G~---~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-----------~~ 134 (288)
.++++|=.|++.|. ++..++++ |++|+.++.+++.++...+.++..+ .++.++.+|+.+.. .
T Consensus 6 ~~k~vlVTGas~GIG~aia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~- 81 (252)
T 3h7a_A 6 RNATVAVIGAGDYIGAEIAKKFAAE-GFTVFAGRRNGEKLAPLVAEIEAAG--GRIVARSLDARNEDEVTAFLNAADAH- 81 (252)
T ss_dssp CSCEEEEECCSSHHHHHHHHHHHHT-TCEEEEEESSGGGGHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHH-
T ss_pred CCCEEEEECCCchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECcCCCHHHHHHHHHHHHhh-
Confidence 46788888877652 34455554 8899999999888877777776655 47899999998743 1
Q ss_pred CCCCEEEEccch
Q 048309 135 KKYDRIISCEMM 146 (288)
Q Consensus 135 ~~fD~I~~~~~l 146 (288)
+..|+++.+..+
T Consensus 82 g~id~lv~nAg~ 93 (252)
T 3h7a_A 82 APLEVTIFNVGA 93 (252)
T ss_dssp SCEEEEEECCCC
T ss_pred CCceEEEECCCc
Confidence 578999886543
|
| >1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A | Back alignment and structure |
|---|
Probab=82.25 E-value=4.9 Score=34.69 Aligned_cols=88 Identities=8% Similarity=-0.005 Sum_probs=57.7
Q ss_pred CCEEEEECCcccHHHHHHHHc---cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-----CCCCCCEEE
Q 048309 70 EHEVLEIGCGWGTFAIEVVRQ---TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-----KAKKYDRII 141 (288)
Q Consensus 70 ~~~vLDiGcG~G~~~~~la~~---~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-----~~~~fD~I~ 141 (288)
..+++=+|+ |..+..+++. .+. |+.+|.+++.++ +++ . .+.++.+|..+.. .-..+|.++
T Consensus 115 ~~~viI~G~--G~~g~~l~~~L~~~g~-v~vid~~~~~~~-~~~----~----~~~~i~gd~~~~~~L~~a~i~~a~~vi 182 (336)
T 1lnq_A 115 SRHVVICGW--SESTLECLRELRGSEV-FVLAEDENVRKK-VLR----S----GANFVHGDPTRVSDLEKANVRGARAVI 182 (336)
T ss_dssp -CEEEEESC--CHHHHHHHTTGGGSCE-EEEESCGGGHHH-HHH----T----TCEEEESCTTSHHHHHHTCSTTEEEEE
T ss_pred cCCEEEECC--cHHHHHHHHHHHhCCc-EEEEeCChhhhh-HHh----C----CcEEEEeCCCCHHHHHhcChhhccEEE
Confidence 457888887 4555666554 466 999999998876 442 2 4789999998743 246788888
Q ss_pred EccchhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 142 SCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 142 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
+... .+...-......+.+.|...++..
T Consensus 183 ~~~~-----~d~~n~~~~~~ar~~~~~~~iiar 210 (336)
T 1lnq_A 183 VDLE-----SDSETIHCILGIRKIDESVRIIAE 210 (336)
T ss_dssp ECCS-----SHHHHHHHHHHHHTTCTTSEEEEE
T ss_pred EcCC-----ccHHHHHHHHHHHHHCCCCeEEEE
Confidence 7532 122333444556677787777764
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} | Back alignment and structure |
|---|
Probab=82.20 E-value=5.7 Score=32.79 Aligned_cols=76 Identities=14% Similarity=0.193 Sum_probs=53.7
Q ss_pred CCCCEEEEECCcccH---HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-----------C
Q 048309 68 SKEHEVLEIGCGWGT---FAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-----------K 133 (288)
Q Consensus 68 ~~~~~vLDiGcG~G~---~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-----------~ 133 (288)
..++++|-.|++.|. ++..+++ .+++|+.++.+++..+...+.+...+ .++.++..|+.+.. .
T Consensus 27 l~~k~vlITGas~gIG~~la~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~~ 103 (262)
T 3rkr_A 27 LSGQVAVVTGASRGIGAAIARKLGS-LGARVVLTARDVEKLRAVEREIVAAG--GEAESHACDLSHSDAIAAFATGVLAA 103 (262)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCChHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHHhC--CceeEEEecCCCHHHHHHHHHHHHHh
Confidence 356788877765432 2334444 48899999999998887777776655 47899999998743 1
Q ss_pred CCCCCEEEEccch
Q 048309 134 AKKYDRIISCEMM 146 (288)
Q Consensus 134 ~~~fD~I~~~~~l 146 (288)
.+..|+++.+..+
T Consensus 104 ~g~id~lv~~Ag~ 116 (262)
T 3rkr_A 104 HGRCDVLVNNAGV 116 (262)
T ss_dssp HSCCSEEEECCCC
T ss_pred cCCCCEEEECCCc
Confidence 1479999987554
|
| >1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A* | Back alignment and structure |
|---|
Probab=81.94 E-value=12 Score=31.16 Aligned_cols=104 Identities=15% Similarity=0.111 Sum_probs=60.9
Q ss_pred CCCEEEEECCcccHHHHHHHHc---cCCEEEEEcCCHH-HHHHHHHHHHHcCCCCceEEEEcccCCCC-----------C
Q 048309 69 KEHEVLEIGCGWGTFAIEVVRQ---TGCNYTGITLSAE-QMKYAEMKVNEAGLQDHIRLYLCDYRQLP-----------K 133 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~~la~~---~~~~v~giD~s~~-~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-----------~ 133 (288)
.++++|-.|++. .++..+++. .+++|++++.++. ..+...+.++..+ .++.++..|+.+.. .
T Consensus 28 ~~k~vlVTGas~-gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 104 (283)
T 1g0o_A 28 EGKVALVTGAGR-GIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNG--SDAACVKANVGVVEDIVRMFEEAVKI 104 (283)
T ss_dssp TTCEEEETTTTS-HHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCc-HHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHHhC--CCeEEEEcCCCCHHHHHHHHHHHHHH
Confidence 466788777654 444444332 4889999987754 3344444444444 36889999987643 1
Q ss_pred CCCCCEEEEccchhh------hCHhhHHH-----------HHHHHhcccccCcEEEEEe
Q 048309 134 AKKYDRIISCEMMEA------VGHEYMEE-----------YFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 134 ~~~fD~I~~~~~l~~------~~~~~~~~-----------~l~~~~~~LkpgG~l~~~~ 175 (288)
-+..|+++.+..+.. .+.++... +++.+...|+.+|.++...
T Consensus 105 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~is 163 (283)
T 1g0o_A 105 FGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMG 163 (283)
T ss_dssp HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEEC
T ss_pred cCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEEe
Confidence 147899998754322 22233322 3345556666778877654
|
| >1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=81.85 E-value=7.6 Score=32.86 Aligned_cols=76 Identities=14% Similarity=0.179 Sum_probs=50.1
Q ss_pred CCCEEEEECCcccHHHHHHHHc---cCCEEEEEcCCHHHHHHHHHHHHHcCC-CCceEEEEcccCCCC-----------C
Q 048309 69 KEHEVLEIGCGWGTFAIEVVRQ---TGCNYTGITLSAEQMKYAEMKVNEAGL-QDHIRLYLCDYRQLP-----------K 133 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~~la~~---~~~~v~giD~s~~~~~~a~~~~~~~g~-~~~v~~~~~d~~~~~-----------~ 133 (288)
.++++|-.|++. .++..+++. .+++|++++.+++..+...+.+...+. ..++.++.+|+.+.. .
T Consensus 25 ~~k~vlVTGas~-gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 103 (297)
T 1xhl_A 25 SGKSVIITGSSN-GIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAK 103 (297)
T ss_dssp TTCEEEETTCSS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCc-HHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHHHHHHHh
Confidence 467788777554 344433332 488999999998877766655554431 116889999998743 0
Q ss_pred CCCCCEEEEccc
Q 048309 134 AKKYDRIISCEM 145 (288)
Q Consensus 134 ~~~fD~I~~~~~ 145 (288)
-+..|+++.+..
T Consensus 104 ~g~iD~lvnnAG 115 (297)
T 1xhl_A 104 FGKIDILVNNAG 115 (297)
T ss_dssp HSCCCEEEECCC
T ss_pred cCCCCEEEECCC
Confidence 147899998754
|
| >3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa} | Back alignment and structure |
|---|
Probab=81.26 E-value=0.14 Score=50.37 Aligned_cols=92 Identities=15% Similarity=0.174 Sum_probs=58.1
Q ss_pred cCCCCCCEEEEECC--cccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCC-------CCCC
Q 048309 65 ARVSKEHEVLEIGC--GWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQL-------PKAK 135 (288)
Q Consensus 65 ~~~~~~~~vLDiGc--G~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~-------~~~~ 135 (288)
.++++|.+||-.|+ |.|..+.++++..|++|++++.++ ..+..+ .|. -.++...-.++ ....
T Consensus 341 a~l~~G~~VLI~gaaGgvG~~aiqlAk~~Ga~V~~t~~~~-k~~~l~-----lga---~~v~~~~~~~~~~~i~~~t~g~ 411 (795)
T 3slk_A 341 AGLRPGESLLVHSAAGGVGMAAIQLARHLGAEVYATASED-KWQAVE-----LSR---EHLASSRTCDFEQQFLGATGGR 411 (795)
T ss_dssp TCCCTTCCEEEESTTBHHHHHHHHHHHHTTCCEEEECCGG-GGGGSC-----SCG---GGEECSSSSTHHHHHHHHSCSS
T ss_pred hCCCCCCEEEEecCCCHHHHHHHHHHHHcCCEEEEEeChH-Hhhhhh-----cCh---hheeecCChhHHHHHHHHcCCC
Confidence 45778999999994 469999999998888999998554 211111 221 11221111111 1235
Q ss_pred CCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 136 KYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 136 ~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
.+|+|+-...- ..+....+.|+|+|+++..
T Consensus 412 GvDvVld~~gg---------~~~~~~l~~l~~~Gr~v~i 441 (795)
T 3slk_A 412 GVDVVLNSLAG---------EFADASLRMLPRGGRFLEL 441 (795)
T ss_dssp CCSEEEECCCT---------TTTHHHHTSCTTCEEEEEC
T ss_pred CeEEEEECCCc---------HHHHHHHHHhcCCCEEEEe
Confidence 79999974321 2345667999999999874
|
| >1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=81.17 E-value=9.8 Score=32.43 Aligned_cols=95 Identities=20% Similarity=0.256 Sum_probs=57.9
Q ss_pred CCCEEEEECCcc-cH-HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCEEEEccch
Q 048309 69 KEHEVLEIGCGW-GT-FAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMM 146 (288)
Q Consensus 69 ~~~~vLDiGcG~-G~-~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~~~~~l 146 (288)
..++|-=||+|. |. ++..++ . +.+|++.|.+++.++.+.+.+...-+ .++++. .|... -...|+|+..-.
T Consensus 11 ~~~~V~vIG~G~MG~~iA~~la-a-G~~V~v~d~~~~~~~~~~~~l~~~~~-~~i~~~-~~~~~---~~~aDlVieavp- 82 (293)
T 1zej_A 11 HHMKVFVIGAGLMGRGIAIAIA-S-KHEVVLQDVSEKALEAAREQIPEELL-SKIEFT-TTLEK---VKDCDIVMEAVF- 82 (293)
T ss_dssp -CCEEEEECCSHHHHHHHHHHH-T-TSEEEEECSCHHHHHHHHHHSCGGGG-GGEEEE-SSCTT---GGGCSEEEECCC-
T ss_pred CCCeEEEEeeCHHHHHHHHHHH-c-CCEEEEEECCHHHHHHHHHHHHHHHh-CCeEEe-CCHHH---HcCCCEEEEcCc-
Confidence 456899999996 44 566666 5 88999999999998887765211100 124422 33332 256899887532
Q ss_pred hhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 147 EAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 147 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
+.. +-...++.++... ||..+...+
T Consensus 83 e~~--~vk~~l~~~l~~~--~~~Ilasnt 107 (293)
T 1zej_A 83 EDL--NTKVEVLREVERL--TNAPLCSNT 107 (293)
T ss_dssp SCH--HHHHHHHHHHHTT--CCSCEEECC
T ss_pred CCH--HHHHHHHHHHhcC--CCCEEEEEC
Confidence 211 3345667777665 776665433
|
| >3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=81.16 E-value=16 Score=33.30 Aligned_cols=99 Identities=18% Similarity=0.229 Sum_probs=59.0
Q ss_pred CEEEEECCcc-c-HHHHHHHHccCCEEEEEcCCHHHH-HHHHHH---HHHcCC-C--------CceEEEEcccCCCCCCC
Q 048309 71 HEVLEIGCGW-G-TFAIEVVRQTGCNYTGITLSAEQM-KYAEMK---VNEAGL-Q--------DHIRLYLCDYRQLPKAK 135 (288)
Q Consensus 71 ~~vLDiGcG~-G-~~~~~la~~~~~~v~giD~s~~~~-~~a~~~---~~~~g~-~--------~~v~~~~~d~~~~~~~~ 135 (288)
.+|.=||+|+ | .++..+++ .+.+|+++|.+++.. +..++. ..+.|. + .++++ ..|... -.
T Consensus 55 ~kVaVIGaG~MG~~IA~~la~-aG~~V~l~D~~~e~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~-t~dl~a---l~ 129 (460)
T 3k6j_A 55 NSVAIIGGGTMGKAMAICFGL-AGIETFLVVRNEQRCKQELEVMYAREKSFKRLNDKRIEKINANLKI-TSDFHK---LS 129 (460)
T ss_dssp CEEEEECCSHHHHHHHHHHHH-TTCEEEEECSCHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEE-ESCGGG---CT
T ss_pred CEEEEECCCHHHHHHHHHHHH-CCCeEEEEECcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEE-eCCHHH---Hc
Confidence 5788899996 4 45566666 488999999999821 111111 112221 1 23333 233332 25
Q ss_pred CCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 136 KYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 136 ~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
..|+|+..-. +-. +....+++++...++|+..++..+.+
T Consensus 130 ~aDlVIeAVp-e~~--~vk~~v~~~l~~~~~~~aIlasnTSs 168 (460)
T 3k6j_A 130 NCDLIVESVI-EDM--KLKKELFANLENICKSTCIFGTNTSS 168 (460)
T ss_dssp TCSEEEECCC-SCH--HHHHHHHHHHHTTSCTTCEEEECCSS
T ss_pred cCCEEEEcCC-CCH--HHHHHHHHHHHhhCCCCCEEEecCCC
Confidence 6899886532 222 34567889999999998877654433
|
| >3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} | Back alignment and structure |
|---|
Probab=80.91 E-value=7.5 Score=32.51 Aligned_cols=75 Identities=15% Similarity=0.175 Sum_probs=53.0
Q ss_pred CCCEEEEECCcccH---HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-----------CC
Q 048309 69 KEHEVLEIGCGWGT---FAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-----------KA 134 (288)
Q Consensus 69 ~~~~vLDiGcG~G~---~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-----------~~ 134 (288)
.++++|-.|++.|. .+..|+++ |++|++++.+++..+...+.+...+ .++.++.+|+.+.. .-
T Consensus 23 ~~k~~lVTGas~GIG~aia~~la~~-G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 99 (279)
T 3sju_A 23 RPQTAFVTGVSSGIGLAVARTLAAR-GIAVYGCARDAKNVSAAVDGLRAAG--HDVDGSSCDVTSTDEVHAAVAAAVERF 99 (279)
T ss_dssp --CEEEEESTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHTTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 46789988876542 34455554 8899999999988877777776655 46899999998743 11
Q ss_pred CCCCEEEEccch
Q 048309 135 KKYDRIISCEMM 146 (288)
Q Consensus 135 ~~fD~I~~~~~l 146 (288)
+..|+++.+..+
T Consensus 100 g~id~lv~nAg~ 111 (279)
T 3sju_A 100 GPIGILVNSAGR 111 (279)
T ss_dssp CSCCEEEECCCC
T ss_pred CCCcEEEECCCC
Confidence 478999987543
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=80.87 E-value=8.7 Score=31.86 Aligned_cols=75 Identities=9% Similarity=0.116 Sum_probs=51.7
Q ss_pred CCCEEEEECCcccHHHHHHHHc---cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-----------CC
Q 048309 69 KEHEVLEIGCGWGTFAIEVVRQ---TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-----------KA 134 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~~la~~---~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-----------~~ 134 (288)
.++++|=.|++. .++..+++. .+++|++++.++...+...+.++..+ .++.++.+|+.+.. .-
T Consensus 30 ~~k~vlITGasg-gIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 106 (272)
T 1yb1_A 30 TGEIVLITGAGH-GIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLG--AKVHTFVVDCSNREDIYSSAKKVKAEI 106 (272)
T ss_dssp TTCEEEEETTTS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCc-hHHHHHHHHHHHCCCEEEEEEcCHHHHHHHHHHHHhcC--CeEEEEEeeCCCHHHHHHHHHHHHHHC
Confidence 567888888654 344443332 48899999999887776666665544 36899999998743 12
Q ss_pred CCCCEEEEccch
Q 048309 135 KKYDRIISCEMM 146 (288)
Q Consensus 135 ~~fD~I~~~~~l 146 (288)
+.+|+++.+...
T Consensus 107 g~iD~li~~Ag~ 118 (272)
T 1yb1_A 107 GDVSILVNNAGV 118 (272)
T ss_dssp CCCSEEEECCCC
T ss_pred CCCcEEEECCCc
Confidence 478999987543
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=80.83 E-value=7.5 Score=31.99 Aligned_cols=75 Identities=13% Similarity=0.148 Sum_probs=53.6
Q ss_pred CCCEEEEECCcccH---HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-----------CC
Q 048309 69 KEHEVLEIGCGWGT---FAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-----------KA 134 (288)
Q Consensus 69 ~~~~vLDiGcG~G~---~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-----------~~ 134 (288)
.++++|=.|++.|. .+..+++ .+++|+.+|.+++..+...+.++..+ .++.++..|+.+.. .-
T Consensus 11 ~~k~vlVTGas~gIG~~ia~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 87 (256)
T 3gaf_A 11 NDAVAIVTGAAAGIGRAIAGTFAK-AGASVVVTDLKSEGAEAVAAAIRQAG--GKAIGLECNVTDEQHREAVIKAALDQF 87 (256)
T ss_dssp TTCEEEECSCSSHHHHHHHHHHHH-HTCEEEEEESSHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 46788877766542 3444555 48899999999988887777776655 47899999998743 11
Q ss_pred CCCCEEEEccch
Q 048309 135 KKYDRIISCEMM 146 (288)
Q Consensus 135 ~~fD~I~~~~~l 146 (288)
+..|+++.+..+
T Consensus 88 g~id~lv~nAg~ 99 (256)
T 3gaf_A 88 GKITVLVNNAGG 99 (256)
T ss_dssp SCCCEEEECCCC
T ss_pred CCCCEEEECCCC
Confidence 479999987543
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=80.57 E-value=3 Score=36.74 Aligned_cols=89 Identities=15% Similarity=0.151 Sum_probs=53.7
Q ss_pred CCEEEEECCcc-cH-HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CCCCCCEEEEccch
Q 048309 70 EHEVLEIGCGW-GT-FAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAKKYDRIISCEMM 146 (288)
Q Consensus 70 ~~~vLDiGcG~-G~-~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~~fD~I~~~~~l 146 (288)
..+|.=||+|. |. ++..+++ .+.+|+++|.+++.++.+.+ .|. . ...+..+.. .....|+|+..-.-
T Consensus 22 ~mkIgiIGlG~mG~~~A~~L~~-~G~~V~v~dr~~~~~~~l~~----~g~----~-~~~s~~e~~~~a~~~DvVi~~vp~ 91 (358)
T 4e21_A 22 SMQIGMIGLGRMGADMVRRLRK-GGHECVVYDLNVNAVQALER----EGI----A-GARSIEEFCAKLVKPRVVWLMVPA 91 (358)
T ss_dssp CCEEEEECCSHHHHHHHHHHHH-TTCEEEEECSCHHHHHHHHT----TTC----B-CCSSHHHHHHHSCSSCEEEECSCG
T ss_pred CCEEEEECchHHHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHH----CCC----E-EeCCHHHHHhcCCCCCEEEEeCCH
Confidence 46898999985 44 3445555 47899999999987665432 232 1 111222211 12345998875433
Q ss_pred hhhCHhhHHHHHHHHhcccccCcEEEE
Q 048309 147 EAVGHEYMEEYFGCCESLLAKDGLLVL 173 (288)
Q Consensus 147 ~~~~~~~~~~~l~~~~~~LkpgG~l~~ 173 (288)
. ....++..+...|++|..++-
T Consensus 92 ~-----~v~~vl~~l~~~l~~g~iiId 113 (358)
T 4e21_A 92 A-----VVDSMLQRMTPLLAANDIVID 113 (358)
T ss_dssp G-----GHHHHHHHHGGGCCTTCEEEE
T ss_pred H-----HHHHHHHHHHhhCCCCCEEEe
Confidence 2 346677788888887765543
|
| >3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=80.46 E-value=14 Score=33.91 Aligned_cols=98 Identities=21% Similarity=0.215 Sum_probs=61.1
Q ss_pred CEEEEECCcc-c-HHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHH-------cCC-C--------CceEEEEcccCCCC
Q 048309 71 HEVLEIGCGW-G-TFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNE-------AGL-Q--------DHIRLYLCDYRQLP 132 (288)
Q Consensus 71 ~~vLDiGcG~-G-~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~-------~g~-~--------~~v~~~~~d~~~~~ 132 (288)
.+|.=||+|. | .++..+++. +.+|++.|.+++.++.+.+.+.. .|. + .++++ ..|...
T Consensus 6 ~kVgVIGaG~MG~~IA~~la~a-G~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~-- 81 (483)
T 3mog_A 6 QTVAVIGSGTMGAGIAEVAASH-GHQVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIP-VTDIHA-- 81 (483)
T ss_dssp CCEEEECCSHHHHHHHHHHHHT-TCCEEEECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEE-ECCGGG--
T ss_pred CEEEEECcCHHHHHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeE-eCCHHH--
Confidence 4677789986 4 445566664 78999999999999888765422 111 0 12332 223322
Q ss_pred CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEee
Q 048309 133 KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 133 ~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
-...|+|+..- .+.. .....+++++...++|+..++..+.
T Consensus 82 -~~~aDlVIeAV-pe~~--~vk~~v~~~l~~~~~~~~IlasntS 121 (483)
T 3mog_A 82 -LAAADLVIEAA-SERL--EVKKALFAQLAEVCPPQTLLTTNTS 121 (483)
T ss_dssp -GGGCSEEEECC-CCCH--HHHHHHHHHHHHHSCTTCEEEECCS
T ss_pred -hcCCCEEEEcC-CCcH--HHHHHHHHHHHHhhccCcEEEecCC
Confidence 24689888642 2222 3456788899899998887655333
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
Probab=80.35 E-value=22 Score=30.17 Aligned_cols=99 Identities=11% Similarity=0.130 Sum_probs=52.0
Q ss_pred CCEEEEECCcc-cHH-HHHHHHccCC--EEEEEcCCHHHHHH-HHHHHHHcCCCCceEEEEc-ccCCCCCCCCCCEEEEc
Q 048309 70 EHEVLEIGCGW-GTF-AIEVVRQTGC--NYTGITLSAEQMKY-AEMKVNEAGLQDHIRLYLC-DYRQLPKAKKYDRIISC 143 (288)
Q Consensus 70 ~~~vLDiGcG~-G~~-~~~la~~~~~--~v~giD~s~~~~~~-a~~~~~~~g~~~~v~~~~~-d~~~~~~~~~fD~I~~~ 143 (288)
..+|.=||+|. |.. +..++.. +. +|+.+|.+++.++. +.+......+.....+... |... -..+|+|+..
T Consensus 7 ~mkI~IiGaG~vG~~~a~~l~~~-g~~~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~aD~Vii~ 82 (319)
T 1lld_A 7 PTKLAVIGAGAVGSTLAFAAAQR-GIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDPEI---CRDADMVVIT 82 (319)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT-TCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCGGG---GTTCSEEEEC
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-CCCCEEEEEeCChhHHHHHHHHHHhhhhhcCCeEEEeCCCHHH---hCCCCEEEEC
Confidence 35899999986 443 3344443 55 89999999876652 2221111111112333332 3222 2468998876
Q ss_pred cchhhhC---H--------hhHHHHHHHHhcccccCcEEEE
Q 048309 144 EMMEAVG---H--------EYMEEYFGCCESLLAKDGLLVL 173 (288)
Q Consensus 144 ~~l~~~~---~--------~~~~~~l~~~~~~LkpgG~l~~ 173 (288)
--....+ . ....++++.+... .|++.++.
T Consensus 83 v~~~~~~g~~r~~~~~~n~~~~~~~~~~i~~~-~~~~~vi~ 122 (319)
T 1lld_A 83 AGPRQKPGQSRLELVGATVNILKAIMPNLVKV-APNAIYML 122 (319)
T ss_dssp CCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTSEEEE
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCceEEE
Confidence 4222111 0 1223556666653 68887665
|
| >2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A* | Back alignment and structure |
|---|
Probab=80.31 E-value=6.7 Score=32.75 Aligned_cols=85 Identities=13% Similarity=-0.064 Sum_probs=50.7
Q ss_pred EEEEECCcc-cHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCEEEEccchhhhC
Q 048309 72 EVLEIGCGW-GTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMMEAVG 150 (288)
Q Consensus 72 ~vLDiGcG~-G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~~~~~l~~~~ 150 (288)
+|.=||+|. |......... +.+|+++|.+++..+...+. |. ... +..+ .-...|+|+..-.-.
T Consensus 3 ~i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~~~~~~~~~~~----g~----~~~--~~~~--~~~~~D~vi~~v~~~--- 66 (289)
T 2cvz_A 3 KVAFIGLGAMGYPMAGHLAR-RFPTLVWNRTFEKALRHQEE----FG----SEA--VPLE--RVAEARVIFTCLPTT--- 66 (289)
T ss_dssp CEEEECCSTTHHHHHHHHHT-TSCEEEECSSTHHHHHHHHH----HC----CEE--CCGG--GGGGCSEEEECCSSH---
T ss_pred eEEEEcccHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHC----CC----ccc--CHHH--HHhCCCEEEEeCCCh---
Confidence 577789986 5543333334 77899999998876655432 32 111 1111 124689988754322
Q ss_pred HhhHHHHHHHHhcccccCcEEEE
Q 048309 151 HEYMEEYFGCCESLLAKDGLLVL 173 (288)
Q Consensus 151 ~~~~~~~l~~~~~~LkpgG~l~~ 173 (288)
.....+++++...+++|..++.
T Consensus 67 -~~~~~v~~~l~~~l~~~~~vv~ 88 (289)
T 2cvz_A 67 -REVYEVAEALYPYLREGTYWVD 88 (289)
T ss_dssp -HHHHHHHHHHTTTCCTTEEEEE
T ss_pred -HHHHHHHHHHHhhCCCCCEEEE
Confidence 2235566777788887765553
|
| >2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=80.27 E-value=7.6 Score=31.50 Aligned_cols=73 Identities=12% Similarity=0.118 Sum_probs=46.8
Q ss_pred CCEEEEECCcccHHHHHHHHc---cCCEEEEEcCCHHHHHHHHHHH-HHcCCCCceEEEEcccCCCC-----C------C
Q 048309 70 EHEVLEIGCGWGTFAIEVVRQ---TGCNYTGITLSAEQMKYAEMKV-NEAGLQDHIRLYLCDYRQLP-----K------A 134 (288)
Q Consensus 70 ~~~vLDiGcG~G~~~~~la~~---~~~~v~giD~s~~~~~~a~~~~-~~~g~~~~v~~~~~d~~~~~-----~------~ 134 (288)
++++|=.|++ |.++..+++. .+++|++++.++...+...+.+ +..+ .++.++.+|+.+.. . -
T Consensus 2 ~k~vlItGas-ggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 78 (250)
T 2cfc_A 2 SRVAIVTGAS-SGNGLAIATRFLARGDRVAALDLSAETLEETARTHWHAYA--DKVLRVRADVADEGDVNAAIAATMEQF 78 (250)
T ss_dssp CCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHSTTTG--GGEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHHh
Confidence 4577877755 3333333332 4789999999987766554443 2222 46899999998743 0 1
Q ss_pred CCCCEEEEccc
Q 048309 135 KKYDRIISCEM 145 (288)
Q Consensus 135 ~~fD~I~~~~~ 145 (288)
+..|+++.+..
T Consensus 79 ~~id~li~~Ag 89 (250)
T 2cfc_A 79 GAIDVLVNNAG 89 (250)
T ss_dssp SCCCEEEECCC
T ss_pred CCCCEEEECCC
Confidence 37899998654
|
| >3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans} | Back alignment and structure |
|---|
Probab=80.21 E-value=9.7 Score=31.05 Aligned_cols=74 Identities=12% Similarity=0.173 Sum_probs=50.0
Q ss_pred CCCEEEEECCcccHHHHHHHHc---cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-----C------C
Q 048309 69 KEHEVLEIGCGWGTFAIEVVRQ---TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-----K------A 134 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~~la~~---~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-----~------~ 134 (288)
.++++|=.|++. .++..+++. .+++|++++.++...+...+.++..+ .++.++.+|+.+.. . .
T Consensus 12 ~~k~vlItGasg-giG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 88 (260)
T 3awd_A 12 DNRVAIVTGGAQ-NIGLACVTALAEAGARVIIADLDEAMATKAVEDLRMEG--HDVSSVVMDVTNTESVQNAVRSVHEQE 88 (260)
T ss_dssp TTCEEEEETTTS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCc-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEEecCCCHHHHHHHHHHHHHHc
Confidence 467888787654 333333332 47899999999887766555555544 36899999998743 0 1
Q ss_pred CCCCEEEEccc
Q 048309 135 KKYDRIISCEM 145 (288)
Q Consensus 135 ~~fD~I~~~~~ 145 (288)
+..|+++.+..
T Consensus 89 ~~id~vi~~Ag 99 (260)
T 3awd_A 89 GRVDILVACAG 99 (260)
T ss_dssp SCCCEEEECCC
T ss_pred CCCCEEEECCC
Confidence 47899988654
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=80.21 E-value=7.2 Score=32.70 Aligned_cols=76 Identities=12% Similarity=0.072 Sum_probs=53.5
Q ss_pred CCCEEEEECCcccH---HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCC-C-----------C
Q 048309 69 KEHEVLEIGCGWGT---FAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQL-P-----------K 133 (288)
Q Consensus 69 ~~~~vLDiGcG~G~---~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~-~-----------~ 133 (288)
.++++|-.|++.|. ++..|++ .+++|++++.+++..+.+.+.+...+- .++.++.+|+.+. . .
T Consensus 11 ~~k~vlITGas~GIG~~~a~~L~~-~G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~Dl~~~~~~v~~~~~~~~~~ 88 (311)
T 3o26_A 11 KRRCAVVTGGNKGIGFEICKQLSS-NGIMVVLTCRDVTKGHEAVEKLKNSNH-ENVVFHQLDVTDPIATMSSLADFIKTH 88 (311)
T ss_dssp -CCEEEESSCSSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHTTTC-CSEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCcEEEEecCCchHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHHHhcCC-CceEEEEccCCCcHHHHHHHHHHHHHh
Confidence 46788877766442 3444444 488999999999887777766665543 4799999999886 2 1
Q ss_pred CCCCCEEEEccch
Q 048309 134 AKKYDRIISCEMM 146 (288)
Q Consensus 134 ~~~fD~I~~~~~l 146 (288)
.+..|+++.+..+
T Consensus 89 ~g~iD~lv~nAg~ 101 (311)
T 3o26_A 89 FGKLDILVNNAGV 101 (311)
T ss_dssp HSSCCEEEECCCC
T ss_pred CCCCCEEEECCcc
Confidence 1479999987654
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=80.17 E-value=7 Score=35.52 Aligned_cols=100 Identities=17% Similarity=0.209 Sum_probs=55.3
Q ss_pred CEEEEECCcc-cHH-HHHHHHccCCEEEEEcCCHHHHHHHHHHHHH---cCC---------CCceEEEEcccCCCCCCCC
Q 048309 71 HEVLEIGCGW-GTF-AIEVVRQTGCNYTGITLSAEQMKYAEMKVNE---AGL---------QDHIRLYLCDYRQLPKAKK 136 (288)
Q Consensus 71 ~~vLDiGcG~-G~~-~~~la~~~~~~v~giD~s~~~~~~a~~~~~~---~g~---------~~~v~~~~~d~~~~~~~~~ 136 (288)
.+|.=||+|. |.. +..+++ .+.+|+++|.+++.++..++.... .++ ..++++. .|..+. -..
T Consensus 3 mkI~VIG~G~vG~~lA~~La~-~G~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~t-~d~~ea--~~~ 78 (450)
T 3gg2_A 3 LDIAVVGIGYVGLVSATCFAE-LGANVRCIDTDRNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRFG-TEIEQA--VPE 78 (450)
T ss_dssp CEEEEECCSHHHHHHHHHHHH-TTCEEEEECSCHHHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEEE-SCHHHH--GGG
T ss_pred CEEEEECcCHHHHHHHHHHHh-cCCEEEEEECCHHHHHHHHcCCCcccCCCHHHHHHhhcccCcEEEE-CCHHHH--Hhc
Confidence 4678899885 443 444555 478999999999887766541000 000 1123322 222221 145
Q ss_pred CCEEEEccchhh-----hCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 137 YDRIISCEMMEA-----VGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 137 fD~I~~~~~l~~-----~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
.|+|+..-.-.. .......+.++.+...|++|-.++..
T Consensus 79 aDvViiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~g~iVV~~ 121 (450)
T 3gg2_A 79 ADIIFIAVGTPAGEDGSADMSYVLDAARSIGRAMSRYILIVTK 121 (450)
T ss_dssp CSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEEC
T ss_pred CCEEEEEcCCCcccCCCcChHHHHHHHHHHHhhCCCCCEEEEe
Confidence 788876432110 00014577788888888877665543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 288 | ||||
| d1kpga_ | 285 | c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [ | 1e-32 | |
| d2fk8a1 | 280 | c.66.1.18 (A:22-301) Methoxy mycolic acid synthase | 7e-30 | |
| d1kpia_ | 291 | c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [ | 9e-28 | |
| d1nkva_ | 245 | c.66.1.21 (A:) Hypothetical Protein YjhP {Escheric | 7e-17 | |
| d1xxla_ | 234 | c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus | 1e-12 | |
| d1l3ia_ | 186 | c.66.1.22 (A:) Precorrin-6Y methyltransferase (Cbi | 3e-12 | |
| d2fyta1 | 311 | c.66.1.6 (A:238-548) Protein arginine N-methyltran | 6e-11 | |
| d2i6ga1 | 198 | c.66.1.44 (A:1-198) Putative methyltransferase Teh | 9e-11 | |
| d1vl5a_ | 231 | c.66.1.41 (A:) Hypothetical protein BH2331 {Bacill | 1e-10 | |
| d2frna1 | 260 | c.66.1.47 (A:19-278) Hypothetical protein PH0793 { | 7e-10 | |
| d1nw3a_ | 328 | c.66.1.31 (A:) Catalytic, N-terminal domain of his | 1e-09 | |
| d1y8ca_ | 246 | c.66.1.43 (A:) Putative methyltransferase CAC2371 | 2e-08 | |
| d1pjza_ | 201 | c.66.1.36 (A:) Thiopurine S-methyltransferase {Pse | 2e-08 | |
| d1oria_ | 316 | c.66.1.6 (A:) Protein arginine N-methyltransferase | 3e-08 | |
| d1u2za_ | 406 | c.66.1.31 (A:) Catalytic, N-terminal domain of his | 4e-08 | |
| d1ri5a_ | 252 | c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransf | 4e-08 | |
| d2a14a1 | 257 | c.66.1.15 (A:5-261) Indolethylamine N-methyltransf | 8e-08 | |
| d1g6q1_ | 328 | c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Ba | 1e-07 | |
| d1dusa_ | 194 | c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeo | 3e-07 | |
| d2o57a1 | 282 | c.66.1.18 (A:16-297) Putative sarcosine dimethylgl | 3e-07 | |
| d1xvaa_ | 292 | c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra | 1e-06 | |
| d1zx0a1 | 229 | c.66.1.16 (A:8-236) Guanidinoacetate methyltransfe | 3e-06 | |
| d1jqea_ | 280 | c.66.1.19 (A:) Histamine methyltransferase {Human | 4e-06 | |
| d1wzna1 | 251 | c.66.1.43 (A:1-251) Hypothetical methyltransferase | 5e-06 | |
| d2gh1a1 | 281 | c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bac | 1e-05 | |
| d1yb2a1 | 250 | c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {T | 3e-05 | |
| d1yzha1 | 204 | c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltra | 1e-04 | |
| d1vbfa_ | 224 | c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransf | 2e-04 | |
| d1jg1a_ | 215 | c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransf | 2e-04 | |
| d2p7ia1 | 225 | c.66.1.41 (A:22-246) Hypothetical protein ECA1738 | 2e-04 | |
| d2ex4a1 | 222 | c.66.1.42 (A:2-224) Adrenal gland protein AD-003 ( | 2e-04 | |
| d2b25a1 | 324 | c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 | 5e-04 | |
| d1o54a_ | 266 | c.66.1.13 (A:) Hypothetical protein TM0748 {Thermo | 5e-04 | |
| d1qzza2 | 256 | c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase | 7e-04 | |
| d1wy7a1 | 201 | c.66.1.32 (A:4-204) Hypothetical protein PH1948 {A | 0.003 | |
| d2fcaa1 | 204 | c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltr | 0.003 | |
| d1im8a_ | 225 | c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) | 0.004 | |
| d1i9ga_ | 264 | c.66.1.13 (A:) Probable methyltransferase Rv2118c | 0.004 |
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 285 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 119 bits (299), Expect = 1e-32
Identities = 62/288 (21%), Positives = 102/288 (35%), Gaps = 59/288 (20%)
Query: 29 NSLAQAHRNISYHYDL---------------------DEDEDLKVAQMRKHSLLIEKARV 67
+ L N+ HYDL +D L+ AQ+ K L + K +
Sbjct: 1 DELKPHFANVQAHYDLSDDFFRLFLDPTQTYSCAYFERDDMTLQEAQIAKIDLALGKLGL 60
Query: 68 SKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCD 127
+L++GCGWG + V + N G+TLS Q + + V + R+ L
Sbjct: 61 QPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAG 120
Query: 128 YRQLPKAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPDARY---- 183
+ Q + DRI+S E GHE + +F LL DG+++L + +
Sbjct: 121 WEQFD--EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHER 178
Query: 184 -----NEYRLSSDFIKEYIFPGGCLPSLSRITSAMAAA---------------------- 216
+ FI IFPGG LPS+ + +A
Sbjct: 179 GLPMSFTFARFLKFIVTEIFPGGRLPSIPMVQECASANGFTVTRVQSLQPHYAKTLDLWS 238
Query: 217 ----SSLSKILALGFNEKFIWTWEYYFDYSAAGFKPRTLGNYQIVLSR 260
++ + +AL E + + Y A F+ + Q +
Sbjct: 239 AALQANKGQAIALQSEEVYE-RYMKYLTGCAEMFRIGYIDVNQFTCQK 285
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 111 bits (279), Expect = 7e-30
Identities = 58/256 (22%), Positives = 91/256 (35%), Gaps = 38/256 (14%)
Query: 45 DEDEDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQ 104
+ L+ AQ K L ++K + +L+IGCGWGT V + N G+TLS Q
Sbjct: 28 PPELTLEEAQYAKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQ 87
Query: 105 MKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMMEAVGHEYMEEYFGCCESL 164
E + ++ L + + DRI+S E E GHE +++F C ++
Sbjct: 88 HARCEQVLASIDTNRSRQVLLQGWEDFA--EPVDRIVSIEAFEHFGHENYDDFFKRCFNI 145
Query: 165 LAKDGLLVLQFSSTPDARYN---------EYRLSSDFIKEYIFPGGCLPSLSRITSAMAA 215
+ DG + +Q S + E FI IFPGG LPS +
Sbjct: 146 MPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPSTEMMVEHGEK 205
Query: 216 A--------------------------SSLSKILALGFNEKFIWTWEYYFDYSAAGFKPR 249
A S+ K + + E + + Y F
Sbjct: 206 AGFTVPEPLSLRPHYIKTLRIWGDTLQSNKDKAIEVTSEEVYNR-YMKYLRGCEHYFTDE 264
Query: 250 TLGNYQIVLSRPGNVS 265
L + +PG +
Sbjct: 265 MLDCSLVTYLKPGAAA 280
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 291 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 106 bits (265), Expect = 9e-28
Identities = 54/287 (18%), Positives = 95/287 (33%), Gaps = 66/287 (22%)
Query: 37 NISYHYDL---------------------DEDEDLKVAQMRKHSLLIEKARVSKEHEVLE 75
+ HYD D L+ AQ K L ++K + +L+
Sbjct: 8 AVRSHYDKSNEFFKLWLDPSMTYSCAYFERPDMTLEEAQYAKRKLALDKLNLEPGMTLLD 67
Query: 76 IGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAK 135
IGCGWG+ V + N G+TLS Q + + +E + + + + +
Sbjct: 68 IGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEFD--E 125
Query: 136 KYDRIISCEMMEAVGHEYMEE-------YFGCCESLLAKDGLLVLQFSSTPDARYNE--- 185
DRI+S E + +F +L DG ++L + PD +
Sbjct: 126 PVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELG 185
Query: 186 ------YRLSSDFIKEYIFPGGCLPSLSRITSAMAAA----------------------- 216
FI IFPGG LP +S++ + A
Sbjct: 186 LTSPMSLLRFIKFILTEIFPGGRLPRISQVDYYSSNAGWKVERYHRIGANYVPTLNAWAD 245
Query: 217 ---SSLSKILALGFNEKFIWTWEYYFDYSAAGFKPRTLGNYQIVLSR 260
+ + +AL ++ + +Y + F+ + Q L +
Sbjct: 246 ALQAHKDEAIALKG-QETCDIYMHYLRGCSDLFRDKYTDVCQFTLVK 291
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Length = 245 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Score = 76.2 bits (186), Expect = 7e-17
Identities = 26/161 (16%), Positives = 47/161 (29%), Gaps = 6/161 (3%)
Query: 56 RKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEA 115
K++ L R+ +L++G G G R G TGI +S+ A+ + E
Sbjct: 20 EKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEEL 79
Query: 116 GLQDHIRLYLCDYRQLPKAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175
G+ + + D +K D G L G++++
Sbjct: 80 GVSERVHFIHNDAAGYVANEKCDVAACVGATWIAGG--FAGAEELLAQSLKPGGIMLI-- 135
Query: 176 SSTPDARYNEYRLSSDFIKEYIFPGGCLPSLSRITSAMAAA 216
P R + +L + A
Sbjct: 136 -GEPYWRQLPATEEIAQAC-GVSSTSDFLTLPGLVGAFDDL 174
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Score = 63.4 bits (153), Expect = 1e-12
Identities = 33/187 (17%), Positives = 60/187 (32%), Gaps = 17/187 (9%)
Query: 59 SLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQ 118
L+I+ A EH VL+IG G G A+ G+ + E ++ A E G++
Sbjct: 6 GLMIKTAECRAEHRVLDIGAGAGHTALAFSPY-VQECIGVDATKEMVEVASSFAQEKGVE 64
Query: 119 DHIRLYLCDYRQLPKAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDG-LLVLQFSS 177
+ +D I + + +L +DG L++ +
Sbjct: 65 NVRFQQGTAESLPFPDDSFDIITCRYAAHHF--SDVRKAVREVARVLKQDGRFLLVDHYA 122
Query: 178 TPDARYNEYRLSSDFIKEYIFPG-GCLPSLSRITSAMAAASSLSKILALGFNEKFIWTWE 236
D +E+ + + P SLS + +A + I W
Sbjct: 123 PEDPVLDEFV---NHLNRLRDPSHVRESSLSEWQAMFSAN---------QLAYQDIQKWN 170
Query: 237 YYFDYSA 243
Y +
Sbjct: 171 LPIQYDS 177
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 61.8 bits (149), Expect = 3e-12
Identities = 25/155 (16%), Positives = 49/155 (31%), Gaps = 12/155 (7%)
Query: 60 LLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQD 119
L++ A K +++GCG G +E + I + E + EM + GL D
Sbjct: 24 LIMCLAEPGKNDVAVDVGCGTGGVTLE-LAGRVRRVYAIDRNPEAISTTEMNLQRHGLGD 82
Query: 120 HIRLYLCDYRQLP-KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSST 178
++ L D + K D + ++E + L G +++
Sbjct: 83 NVTLMEGDAPEALCKIPDIDIAVVGG-----SGGELQEILRIIKDKLKPGGRIIVTAILL 137
Query: 179 PDAR-----YNEYRLSSDFIKEYIFPGGCLPSLSR 208
+ + + I G L +
Sbjct: 138 ETKFEAMECLRDLGFDVNITELNIARGRALDRGTM 172
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.5 bits (143), Expect = 6e-11
Identities = 27/159 (16%), Positives = 57/159 (35%), Gaps = 6/159 (3%)
Query: 37 NISYHYDLDEDEDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYT 96
+ H ++ +D K+ + + + K+ VL++GCG G ++ +
Sbjct: 6 HYGIHEEMLKD---KIRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVL 62
Query: 97 GITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMM--EAVGHEYM 154
G+ S E + A + L+D I L ++ + +I E M + +
Sbjct: 63 GVDQS-EILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMGYFLLFESML 121
Query: 155 EEYFGCCESLLAKDGLLVLQFSSTPDARYNEYRLSSDFI 193
+ LAK G + + ++ +D I
Sbjct: 122 DSVLYAKNKYLAKGGSVYPDICTISLVAVSDVNKHADRI 160
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Score = 58.1 bits (139), Expect = 9e-11
Identities = 28/145 (19%), Positives = 53/145 (36%), Gaps = 6/145 (4%)
Query: 56 RKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEA 115
R HS ++ A+V L++GCG G ++ + + T + M E A
Sbjct: 17 RTHSDVLAAAKVVAPGRTLDLGCGNGRNSLYLAANG-YDVTAWDKNPASMANLERI-KAA 74
Query: 116 GLQDHIRLYLCDYRQLPKAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ- 174
D+++ L D L +YD I+S +M + + + + G ++
Sbjct: 75 EGLDNLQTDLVDLNTLTFDGEYDFILSTVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVA 134
Query: 175 FSSTPDARYNE---YRLSSDFIKEY 196
TPD + ++ Y
Sbjct: 135 AMDTPDFPCTVGFPFAFKEGELRRY 159
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Score = 58.1 bits (139), Expect = 1e-10
Identities = 27/184 (14%), Positives = 59/184 (32%), Gaps = 15/184 (8%)
Query: 61 LIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDH 120
L++ A + EVL++ G G A L+ + +K A + G Q
Sbjct: 7 LMQIAALKGNEEVLDVATGGGHVANAFAPF-VKKVVAFDLTEDILKVARAFIEGNGHQQV 65
Query: 121 IRLYLCDYRQLPKAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPD 180
+ + +++ + + +L K G L+L +S P+
Sbjct: 66 EYVQGDAEQMPFTDERFHIVTCRIAAHH--FPNPASFVSEAYRVLKKGGQLLLVDNSAPE 123
Query: 181 ARYNEYRLSSDFI-KEYIFPGGCLPSLSRITSAMAAASSLSKILALGFNEKFIWTWEYYF 239
+ + + +++ KE + S + A GF + + + F
Sbjct: 124 --NDAFDVFYNYVEKERDYSHHRAWKKSDWLKMLEEA---------GFELEELHCFHKTF 172
Query: 240 DYSA 243
+
Sbjct: 173 IFED 176
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Score = 56.3 bits (135), Expect = 7e-10
Identities = 15/99 (15%), Positives = 33/99 (33%), Gaps = 6/99 (6%)
Query: 73 VLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP 132
V+++ G G ++ + I K+ ++ ++D + Y D R P
Sbjct: 111 VVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFP 170
Query: 133 KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLL 171
DRI+ + E+ S+ ++
Sbjct: 171 GENIADRILMGYV------VRTHEFIPKALSIAKDGAII 203
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} Length = 328 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.0 bits (134), Expect = 1e-09
Identities = 27/186 (14%), Positives = 59/186 (31%), Gaps = 10/186 (5%)
Query: 21 FLRHI-SRKNSLAQAHRNISYHYDLDEDEDLKVAQMRKHSLLIEKARVSKEHEVLEIGCG 79
LRHI + + + +Y+ E + +I++ +++ + +++G G
Sbjct: 102 LLRHILQQVYNHSVTDPEKLNNYEPFSPEVYGETSFDLVAQMIDEIKMTDDDLFVDLGSG 161
Query: 80 WGTFAIEVVRQTGC-NYTGITLSAEQMKYAEMKVNEAGL--------QDHIRLYLCDYRQ 130
G ++V T C ++ G+ + KYAE E L D+
Sbjct: 162 VGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLS 221
Query: 131 LPKAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPDARYNEYRLSS 190
++ + ++ + + + G +V P R S
Sbjct: 222 EEWRERIANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSKPFAPLNFRINSRNLS 281
Query: 191 DFIKEY 196
D
Sbjct: 282 DIGTIM 287
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Score = 52.0 bits (123), Expect = 2e-08
Identities = 22/162 (13%), Positives = 52/162 (32%), Gaps = 1/162 (0%)
Query: 37 NISYHYDLDEDEDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYT 96
++ YD D+ + + + L++ CG G + + N
Sbjct: 5 KFAHIYDKLIRADVDYKKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPK-FKNTW 63
Query: 97 GITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMMEAVGHEYMEE 156
+ LS E + AE K GL+ + + + + + +++
Sbjct: 64 AVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNYIIDSDDLKK 123
Query: 157 YFGCCESLLAKDGLLVLQFSSTPDARYNEYRLSSDFIKEYIF 198
YF + L + G+ + +S ++ + +F
Sbjct: 124 YFKAVSNHLKEGGVFIFDINSYYKLSQVLGNNDFNYDDDEVF 165
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} Length = 201 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Score = 50.9 bits (120), Expect = 2e-08
Identities = 22/163 (13%), Positives = 43/163 (26%), Gaps = 16/163 (9%)
Query: 62 IEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQD-- 119
V VL CG + Q G + G LS ++ + E
Sbjct: 13 WSSLNVVPGARVLVPLCGKSQDMSWLSGQ-GYHVVGAELSEAAVERYFTERGEQPHITSQ 71
Query: 120 ---------HIRLYLCDYRQLPKA--KKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKD 168
I ++ D+ L M A+ + E Y E+L+ +
Sbjct: 72 GDFKVYAAPGIEIWCGDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQA 131
Query: 169 GLLVLQFSSTPDARY--NEYRLSSDFIKEYIFPGGCLPSLSRI 209
+L A + + ++ + + +
Sbjct: 132 CSGLLITLEYDQALLEGPPFSVPQTWLHRVMSGNWEVTKVGGQ 174
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 316 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 51.7 bits (123), Expect = 3e-08
Identities = 26/138 (18%), Positives = 47/138 (34%), Gaps = 6/138 (4%)
Query: 37 NISYHYDLDEDEDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYT 96
+ H ++ +DE V + + + + K+ VL++G G G + +
Sbjct: 4 HFGIHEEMLKDE---VRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVI 60
Query: 97 GITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMMEAVGH--EYM 154
GI S YA V L + + ++ + II E M +
Sbjct: 61 GIECS-SISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESML 119
Query: 155 EEYFGCCESLLAKDGLLV 172
+ LA DGL+
Sbjct: 120 NTVLHARDKWLAPDGLIF 137
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 406 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 51.6 bits (123), Expect = 4e-08
Identities = 25/194 (12%), Positives = 62/194 (31%), Gaps = 18/194 (9%)
Query: 10 ALVSKVNQKSYFLRHISRKNSLAQAHRNISYHYDLDEDEDLKVAQMRKHSLLIEKARVSK 69
+ + Y + N L +Y Y E ++ + ++ ++ K
Sbjct: 165 SFIHDFLHIVYTRSIHPQANKLKHYKAFSNYVYG--ELLPNFLSDV------YQQCQLKK 216
Query: 70 EHEVLEIGCGWGTFAIEVVRQTGC-NYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDY 128
+++G G G ++ + GC G + + ++ E + + +
Sbjct: 217 GDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNN 276
Query: 129 RQLPKAKKY-------DRIISCEMMEAVGHEYMEEYFGCCESLLA--KDGLLVLQFSSTP 179
+ K + + I C+++ + E+ E +L K G ++ S
Sbjct: 277 VEFSLKKSFVDNNRVAELIPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIISLKSLR 336
Query: 180 DARYNEYRLSSDFI 193
Y + + I
Sbjct: 337 SLTYQINFYNVENI 350
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Score = 50.7 bits (120), Expect = 4e-08
Identities = 25/157 (15%), Positives = 48/157 (30%), Gaps = 13/157 (8%)
Query: 51 KVAQMRKH-----SLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQM 105
K +R + LI + VL++GCG G ++ R Y G+ ++ +
Sbjct: 2 KTINIRNANNFIKACLIRL-YTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSI 60
Query: 106 KYAEMKVNEAGLQDHIRLYLCD--YRQLPKAKKYDRIISCEMMEAVGH--EYMEEYFGCC 161
A ++ + + D R + K++D I S E ++
Sbjct: 61 NDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNI 120
Query: 162 ESLLAKDGLLVLQFSSTPDARYNEYRLSSDFIKEYIF 198
L G + P R + +
Sbjct: 121 ARHLRPGGYF---IMTVPSRDVILERYKQGRMSNDFY 154
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.1 bits (118), Expect = 8e-08
Identities = 19/202 (9%), Positives = 49/202 (24%), Gaps = 45/202 (22%)
Query: 41 HYDLDEDEDLKVAQMRKHSLLIEKARVSKEHE---VLEIGCGWGTFAIEVVRQTGCNYTG 97
+Y D + ++ + + K + +++IG G + + + + T
Sbjct: 20 YYSFDGSPSPEAEMLKFNLECLHKTFGPGGLQGDTLIDIGSGPTIYQVLAACDSFQDITL 79
Query: 98 ITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQL-------------------------- 131
+ + E + + + +L
Sbjct: 80 SDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAAVKRVLKCDV 139
Query: 132 --------PKAKKYDRIISCEMMEAVG--HEYMEEYFGCCESLLAKDGLLVLQ------F 175
D +++ ME + SLL G LV
Sbjct: 140 HLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPS 199
Query: 176 SSTPDARYNEYRLSSDFIKEYI 197
++ L +++ +
Sbjct: 200 YMVGKREFSCVALEKGEVEQAV 221
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 328 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 49.9 bits (118), Expect = 1e-07
Identities = 27/138 (19%), Positives = 53/138 (38%), Gaps = 6/138 (4%)
Query: 37 NISYHYDLDEDEDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYT 96
+ H ++ +D V + + +I+ + K+ VL++GCG G ++ + +
Sbjct: 9 HYGIHEEMLQD---TVRTLSYRNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVI 65
Query: 97 GITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMMEAV--GHEYM 154
G+ +S ++ A+ V G D I L + II E M M
Sbjct: 66 GVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGYFLLYESMM 124
Query: 155 EEYFGCCESLLAKDGLLV 172
+ + L + GL+
Sbjct: 125 DTVLYARDHYLVEGGLIF 142
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 194 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 47.7 bits (112), Expect = 3e-07
Identities = 27/133 (20%), Positives = 52/133 (39%), Gaps = 1/133 (0%)
Query: 60 LLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQD 119
+L+E V K+ ++L++GCG+G I + + E
Sbjct: 43 ILVENVVVDKDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIKLNNLDNY 102
Query: 120 HIRLYLCDYRQLPKAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTP 179
IR+ D + K +KY++II+ + A G E + + LL +G + + +
Sbjct: 103 DIRVVHSDLYENVKDRKYNKIITNPPIRA-GKEVLHRIIEEGKELLKDNGEIWVVIQTKQ 161
Query: 180 DARYNEYRLSSDF 192
A+ + F
Sbjct: 162 GAKSLAKYMKDVF 174
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} Length = 282 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Score = 48.6 bits (114), Expect = 3e-07
Identities = 30/206 (14%), Positives = 72/206 (34%), Gaps = 10/206 (4%)
Query: 35 HRNISYHYDLDEDEDLKVAQMRKHSLLIEK----ARVSKEHEVLEIGCGWGTFAIEVVRQ 90
++ + + + ++++ A +R L + + ++ + L++G G+G A +VR+
Sbjct: 29 DIHVGLYKEPVDQDEIREASLRTDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRK 88
Query: 91 TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMMEAVG 150
G + + ++ Q K E N+AGL D+I + + ++P I +
Sbjct: 89 FGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWS-QDAFLH 147
Query: 151 HEYMEEYFGCCESLLAKDGLLVLQFSSTPDARYNEYRLSSDFIKEYIFPGGCLPSLSRIT 210
+ F C +L G++ + D + + SL
Sbjct: 148 SPDKLKVFQECARVLKPRGVMAITDPMKEDGIDKSSI--QPILDRIKLHD--MGSLGLYR 203
Query: 211 SAMAAASSLSKILALGFNEKFIWTWE 236
S + + + +
Sbjct: 204 SLAKECGL-VTLRTFSRPDSLVHHYS 228
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 46.9 bits (110), Expect = 1e-06
Identities = 25/149 (16%), Positives = 45/149 (30%), Gaps = 16/149 (10%)
Query: 40 YHYDLDEDEDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGIT 99
D + A+ + L+ R H VL++ CG G +I +V + G + T +
Sbjct: 29 VWQLYIGDTRSRTAEYKAW--LLGLLRQHGCHRVLDVACGTGVDSIMLVEE-GFSVTSVD 85
Query: 100 LSAEQMKYAEMKVNEAGLQ--------DHIRLYLCDYRQLPKAKKYDRIISCEMMEAV-- 149
S + +KYA + + + D I +
Sbjct: 86 ASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPD 145
Query: 150 ---GHEYMEEYFGCCESLLAKDGLLVLQF 175
S++ GLLV+
Sbjct: 146 SKGDQSEHRLALKNIASMVRPGGLLVIDH 174
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.7 bits (104), Expect = 3e-06
Identities = 26/195 (13%), Positives = 47/195 (24%), Gaps = 14/195 (7%)
Query: 24 HISRKNSLAQAHRNISYHYDLDE---DEDLKVAQMRKHSLLIE---KARVSKEHEVLEIG 77
+ + + A YD + K R + + A SK VLE+G
Sbjct: 2 IFAPGENCSPAWGAAPAAYDAADTHLRILGKPVMERWETPYMHALAAAASSKGGRVLEVG 61
Query: 78 CGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKY 137
G A +V + I + + + L + +
Sbjct: 62 FGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGH 121
Query: 138 DRIISCEMMEAVGH----EYMEEYFGCCESLLAKDGLLVLQFSSTPDARYNEYRLSSDFI 193
I + LL G+ + + E S
Sbjct: 122 FDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGV----LTYCNLTSWGELMKSKYSD 177
Query: 194 KEYIFPGGCLPSLSR 208
+F +P+L
Sbjct: 178 ITIMFEETQVPALLE 192
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.0 bits (105), Expect = 4e-06
Identities = 23/159 (14%), Positives = 53/159 (33%), Gaps = 21/159 (13%)
Query: 60 LLIEKARVSKEHEVLEIGCGWGTFAIEVVRQT-------GCNYTGITLSAEQMKYAEMKV 112
++ E ++L IG G G ++++ + N + SAEQ+ + V
Sbjct: 31 IIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELV 90
Query: 113 NEAGL---------QDHIRLYLCDYRQLPKAKKYDRIISCEMMEAVGHEYMEEYFGCCES 163
+ ++ Y + + +K+D I +M+ V + + S
Sbjct: 91 AKISNLENVKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQMLYYV--KDIPATLKFFHS 148
Query: 164 LLAKDGLLVLQFSSTPDARYNEYRLSSDFIKEYIFPGGC 202
LL + +++ +L + + C
Sbjct: 149 LLGTNAKMLI---IVVSGSSGWDKLWKKYGSRFPQDDLC 184
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 44.3 bits (103), Expect = 5e-06
Identities = 23/165 (13%), Positives = 54/165 (32%), Gaps = 6/165 (3%)
Query: 37 NISYHYDLDEDEDLKV--AQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCN 94
++ +YD ++ A++ + ++ + VL++ CG G +E+ +
Sbjct: 7 LLAEYYDTIYRRRIERVKAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAERG-YE 65
Query: 95 YTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMMEAVGHEY- 153
G+ L E ++ A K E L+ ++D + E
Sbjct: 66 VVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFK--NEFDAVTMFFSTIMYFDEED 123
Query: 154 MEEYFGCCESLLAKDGLLVLQFSSTPDARYNEYRLSSDFIKEYIF 198
+ + F L G+ + F + + ++ E
Sbjct: 124 LRKLFSKVAEALKPGGVFITDFPCWFYGGRDGPVVWNEQKGEEKL 168
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Score = 43.3 bits (101), Expect = 1e-05
Identities = 17/114 (14%), Positives = 38/114 (33%), Gaps = 2/114 (1%)
Query: 60 LLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQD 119
L+ +++K +++ GCG+G + ++ + + + AE + L
Sbjct: 18 LVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY 77
Query: 120 HIRLYLCDYRQLPKAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVL 173
D ++ KYD I + E + K G ++
Sbjct: 78 DSEFLEGDATEIELNDKYDIAICHAFLLH--MTTPETMLQKMIHSVKKGGKIIC 129
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Score = 42.0 bits (98), Expect = 3e-05
Identities = 15/116 (12%), Positives = 39/116 (33%), Gaps = 9/116 (7%)
Query: 59 SLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCN--YTGITLSAEQMKYAEMKVNEAG 116
S +I + + ++LE+G G G + ++ T + + +K A ++E
Sbjct: 75 SYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFY 134
Query: 117 LQDHIRLYLCDYRQLPKAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLV 172
++R D D++ + + + S++ +
Sbjct: 135 DIGNVRTSRSDIADFI----SDQMYDAVIADIPDPWNHVQK---IASMMKPGSVAT 183
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} Length = 204 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Score = 39.9 bits (92), Expect = 1e-04
Identities = 24/128 (18%), Positives = 45/128 (35%), Gaps = 14/128 (10%)
Query: 73 VLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQL 131
+E+G G G F + +Q NY GI + + YA + +I+L D L
Sbjct: 35 HVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYA-LDKVLEVGVPNIKLLWVDGSDL 93
Query: 132 PKAKKYDRIISCEMMEAVGH---------EYMEEYFGCCESLLAKDGLLVLQFSSTPDAR 182
+ I + + + + + +L ++G + + T +
Sbjct: 94 TDYFEDGEIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFK---TDNRG 150
Query: 183 YNEYRLSS 190
EY L S
Sbjct: 151 LFEYSLVS 158
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} Length = 224 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Score = 39.8 bits (92), Expect = 2e-04
Identities = 24/185 (12%), Positives = 59/185 (31%), Gaps = 21/185 (11%)
Query: 22 LRHISRKNSLAQAHRNISYHYDLDEDEDLKVA------QMRKHSLLIEKARVSKEHEVLE 75
+ R L + ++ +Y E L + + ++++ + K +VLE
Sbjct: 20 FNKVDRSLFLPENLKDYAY---AHTHEALPILPGINTTALNLGIFMLDELDLHKGQKVLE 76
Query: 76 IGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAK 135
IG G G + + + ++ + YA ++ ++I+L L D + +
Sbjct: 77 IGTGIGYYTALIAEI-VDKVVSVEINEKMYNYASKLLSY---YNNIKLILGDGTLGYEEE 132
Query: 136 KYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPDARYNEY-RLSSDFIK 194
V L + G+++L + + + +
Sbjct: 133 -------KPYDRVVVWATAPTLLCKPYEQLKEGGIMILPIGVGRVQKLYKVIKKGNSPSL 185
Query: 195 EYIFP 199
E +
Sbjct: 186 ENLGE 190
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 215 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Score = 39.4 bits (91), Expect = 2e-04
Identities = 26/153 (16%), Positives = 55/153 (35%), Gaps = 9/153 (5%)
Query: 22 LRHISRKNSLAQAHRNISY-HYDLDEDEDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGW 80
R S+ ++ ++ L V+ ++++E A + +LE+G G
Sbjct: 30 FLKYPRYLSVEDKYKKYAHIDEPLPIPAGQTVSAPHMVAIMLEIANLKPGMNILEVGTGS 89
Query: 81 GTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRI 140
G A + + I E +++A+ + AG+++ + + P YD I
Sbjct: 90 GWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKAPYDVI 149
Query: 141 ISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVL 173
I + +E L G L++
Sbjct: 150 IVTAGAPKIPEPLIE--------QLKIGGKLII 174
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} Length = 225 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Score = 39.1 bits (90), Expect = 2e-04
Identities = 23/143 (16%), Positives = 54/143 (37%), Gaps = 11/143 (7%)
Query: 58 HSLLIEK-ARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAG 116
H ++ + +LE+G G F +++ + T + S E + +A+ ++
Sbjct: 8 HPFMVRAFTPFFRPGNLLELGSFKGDFT-SRLQEHFNDITCVEASEEAISHAQGRL---- 62
Query: 117 LQDHIRLYLCDYRQLPKAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFS 176
+D I + ++YD I+ ++E + + + + LA+ G L L
Sbjct: 63 -KDGITYIHSRFEDAQLPRRYDNIVLTHVLEHI-DDPVALLKRINDDWLAEGGRLFL--- 117
Query: 177 STPDARYNEYRLSSDFIKEYIFP 199
P+A +++
Sbjct: 118 VCPNANAVSRQIAVKMGIISHNS 140
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} Length = 222 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.0 bits (89), Expect = 2e-04
Identities = 22/149 (14%), Positives = 54/149 (36%)
Query: 42 YDLDEDEDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLS 101
Y D+ ++ L E + L+ G G G ++ + ++
Sbjct: 33 YGHISSIDINSSRKFLQRFLREGPNKTGTSCALDCGAGIGRITKRLLLPLFREVDMVDIT 92
Query: 102 AEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMMEAVGHEYMEEYFGCC 161
+ + A+ + E G + P+ YD I ++ + +++ E+ C
Sbjct: 93 EDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRC 152
Query: 162 ESLLAKDGLLVLQFSSTPDARYNEYRLSS 190
+ L +G++V++ + + + SS
Sbjct: 153 KGSLRPNGIIVIKDNMAQEGVILDDVDSS 181
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} Length = 324 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.6 bits (89), Expect = 5e-04
Identities = 16/130 (12%), Positives = 38/130 (29%), Gaps = 22/130 (16%)
Query: 58 HSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCN--YTGITLSAEQMKYAEMKVNEA 115
++++ ++ VLE G G G ++ + + G + + A+
Sbjct: 87 INMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHW 146
Query: 116 GLQ----------DHIRLYLCDYRQLP---KAKKYDRIISCEMMEAVGHEYMEEYFGCCE 162
D++ D K+ +D + +M+ H +
Sbjct: 147 RDSWKLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVA-LDMLNP--HVTLPV----FY 199
Query: 163 SLLAKDGLLV 172
L G+
Sbjct: 200 PHLKHGGVCA 209
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Score = 38.6 bits (89), Expect = 5e-04
Identities = 20/123 (16%), Positives = 38/123 (30%), Gaps = 9/123 (7%)
Query: 52 VAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCN--YTGITLSAEQMKYAE 109
+ + S + V + +++ G G G + R G + E K AE
Sbjct: 86 IVYPKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAE 145
Query: 110 MKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDG 169
+ + GL + + + + D + +D + V Y C L G
Sbjct: 146 SNLTKWGLIERVTIKVRDISE-----GFDEKDVDALFLDVPD--PWNYIDKCWEALKGGG 198
Query: 170 LLV 172
Sbjct: 199 RFA 201
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Length = 256 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Score = 38.0 bits (87), Expect = 7e-04
Identities = 25/156 (16%), Positives = 55/156 (35%)
Query: 61 LIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDH 120
+ S VL++G G G + + + A + A + +AGL D
Sbjct: 73 PADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADR 132
Query: 121 IRLYLCDYRQLPKAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPD 180
+ + D+ + ++S ++ + + GC +L LLVL +
Sbjct: 133 VTVAEGDFFKPLPVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEG 192
Query: 181 ARYNEYRLSSDFIKEYIFPGGCLPSLSRITSAMAAA 216
+ + + ++ F GG + + + +A
Sbjct: 193 DGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSA 228
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 201 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 35.6 bits (81), Expect = 0.003
Identities = 11/132 (8%), Positives = 36/132 (27%), Gaps = 9/132 (6%)
Query: 73 VLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP 132
V ++G G G + + + + E + N + ++++ D +
Sbjct: 50 VADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVL--IENLGEFKGKFKVFIGDVSEFN 107
Query: 133 KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPD-----ARYNEYR 187
+ D +I + + + + L + + +
Sbjct: 108 --SRVDIVIMNPPFGSQRKHADRPFLLKAFEISDVVYSIHLAKPEVRRFIEKFSWEHGFV 165
Query: 188 LSSDFIKEYIFP 199
++ + P
Sbjct: 166 VTHRLTTKIEIP 177
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} Length = 204 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Score = 35.6 bits (81), Expect = 0.003
Identities = 23/125 (18%), Positives = 40/125 (32%), Gaps = 12/125 (9%)
Query: 73 VLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQL 131
+E+G G G F + +Q NY GI L + A KV ++ Q+ L +
Sbjct: 33 HIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLT 92
Query: 132 PKAKKYDRIISCE--------MMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPDARY 183
+ + + E ++ K G + + T +
Sbjct: 93 DVFEPGEVKRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFK---TDNRGL 149
Query: 184 NEYRL 188
EY L
Sbjct: 150 FEYSL 154
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} Length = 225 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Score = 35.9 bits (81), Expect = 0.004
Identities = 14/114 (12%), Positives = 36/114 (31%), Gaps = 3/114 (2%)
Query: 54 QMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEV---VRQTGCNYTGITLSAEQMKYAEM 110
+ ++ + V+ + V ++GC G + + Q GI S ++
Sbjct: 24 NIITAIGMLAERFVTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQ 83
Query: 111 KVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMMEAVGHEYMEEYFGCCESL 164
+ + + + D R + I++ + + + E L
Sbjct: 84 HIAAYHSEIPVEILCNDIRHVEIKNASMVILNFTLQFLPPEDRIALLTKIYEGL 137
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 264 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 35.7 bits (82), Expect = 0.004
Identities = 24/120 (20%), Positives = 45/120 (37%), Gaps = 12/120 (10%)
Query: 58 HSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCN--YTGITLSAEQMKYAEMKVNEA 115
+ ++ + + VLE G G G + ++R G A+ ++A V+
Sbjct: 85 AAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGC 144
Query: 116 GLQ--DHIRLYLCDYRQLPKAK-KYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLV 172
Q D+ RL + D DR + +M+ E ++ LL G+L+
Sbjct: 145 YGQPPDNWRLVVSDLADSELPDGSVDRAV-LDMLAP--WEVLDA----VSRLLVAGGVLM 197
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 288 | |||
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 100.0 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 100.0 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 100.0 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.93 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.9 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.9 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.9 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.88 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.88 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.86 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.86 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.85 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.84 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.84 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.83 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.82 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.82 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.82 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.81 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.79 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.79 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.79 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.77 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.76 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.75 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.74 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.72 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.71 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.7 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.69 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.68 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.68 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.68 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.68 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.67 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.66 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.66 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 99.65 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 99.65 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.64 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.64 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.64 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.62 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.62 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.59 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.58 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.58 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.58 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 99.53 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.51 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 99.51 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.49 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 99.48 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 99.47 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 99.46 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 99.45 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 99.45 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 99.42 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 99.39 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 99.38 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 99.37 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 99.36 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 99.36 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 99.32 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 99.29 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 99.25 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 99.24 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 99.24 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 99.23 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 99.22 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 99.19 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 99.17 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 99.17 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 99.12 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 98.97 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 98.96 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 98.93 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 98.92 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 98.91 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 98.89 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 98.86 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 98.82 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 98.8 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 98.8 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 98.78 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 98.77 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 98.77 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 98.76 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 98.72 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 98.7 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 98.7 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 98.64 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 98.59 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 98.58 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 98.47 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 98.41 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 98.3 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.28 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 98.18 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 98.09 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 98.04 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 98.04 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 97.97 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 97.94 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 97.86 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 97.82 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 97.79 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 97.74 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 97.71 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 97.64 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 97.61 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 97.61 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 97.53 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 97.47 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 97.42 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 97.41 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 97.18 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 97.16 | |
| d1o9ga_ | 249 | rRNA methyltransferase AviRa {Streptomyces viridoc | 97.09 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 97.04 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 96.95 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 96.94 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 96.86 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 96.81 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 96.79 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 96.68 | |
| d2uyoa1 | 297 | Putative methyltransferase ML2640 {Mycobacterium l | 96.64 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 96.46 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 96.42 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 96.32 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 95.97 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 95.95 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 95.88 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 95.82 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 95.74 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 95.72 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 95.49 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 95.46 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 95.43 | |
| d1zkda1 | 365 | Hypothetical protein RPA4359 {Rhodopseudomonas pal | 95.35 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 95.35 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 94.41 | |
| d1dcta_ | 324 | DNA methylase HaeIII {Haemophilus aegyptius [TaxId | 94.12 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 93.12 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 92.99 | |
| d2c7pa1 | 327 | DNA methylase HhaI {Haemophilus haemolyticus [TaxI | 92.68 | |
| d1g55a_ | 343 | DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | 92.67 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 92.17 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 92.14 | |
| d2py6a1 | 395 | Methyltransferase FkbM {Methylobacillus flagellatu | 92.1 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 92.06 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 91.49 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 90.56 | |
| d1o8ca2 | 77 | Hypothetical protein YhdH {Escherichia coli [TaxId | 90.17 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 89.8 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 89.78 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 89.43 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 89.14 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 88.56 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 87.64 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 87.63 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 86.89 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 86.84 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 86.74 | |
| d1rjda_ | 328 | Leucine carboxy methyltransferase Ppm1 {Baker's ye | 86.2 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 86.19 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 86.03 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 85.56 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 85.34 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 85.04 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 84.86 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 84.85 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 84.73 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 84.27 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 83.91 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 83.03 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 82.74 | |
| d1y1pa1 | 342 | Aldehyde reductase II {Sporobolomyces salmonicolor | 82.16 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 81.55 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 80.59 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 80.36 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 80.3 |
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=100.00 E-value=4e-39 Score=279.71 Aligned_cols=227 Identities=27% Similarity=0.447 Sum_probs=198.5
Q ss_pred ChHHHHHhhhhhcCCC---------------------CCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHH
Q 048309 30 SLAQAHRNISYHYDLD---------------------EDEDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVV 88 (288)
Q Consensus 30 ~~~~~~~~~a~~Yd~~---------------------~~~~l~~a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la 88 (288)
+..++.++|+.|||.+ ++.++++||.++++.+++++++++|.+|||||||+|.++.+++
T Consensus 2 ~~~~~~~~i~~HYD~~~~fy~~~Lg~~~~YS~g~~~~~~~tL~eAQ~~k~~~~~~~l~l~~G~~VLDiGCG~G~~a~~~a 81 (285)
T d1kpga_ 2 ELKPHFANVQAHYDLSDDFFRLFLDPTQTYSCAYFERDDMTLQEAQIAKIDLALGKLGLQPGMTLLDVGCGWGATMMRAV 81 (285)
T ss_dssp CSCCCHHHHHHHHTSCHHHHTTTSCTTCCCSCCCCSSTTCCHHHHHHHHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHH
T ss_pred CCCccHHHHHHhcCCcHHHHHHhCCCCCcEeeEEeCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEecCcchHHHHHHH
Confidence 4456778999999988 5679999999999999999999999999999999999999999
Q ss_pred HccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccC
Q 048309 89 RQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKD 168 (288)
Q Consensus 89 ~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~Lkpg 168 (288)
+..+++|+||++|+++++.|++++++.|+.+++++..+|..+++ ++||.|++.++++|++..+...+++++.++||||
T Consensus 82 ~~~g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~~--~~fD~i~si~~~eh~~~~~~~~~~~~~~r~Lkpg 159 (285)
T d1kpga_ 82 EKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD--EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPAD 159 (285)
T ss_dssp HHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC--CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTT
T ss_pred hcCCcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhccc--ccccceeeehhhhhcCchhHHHHHHHHHhhcCCC
Confidence 88889999999999999999999999999899999999998875 7899999999999998788899999999999999
Q ss_pred cEEEEEeecCCCcccc---------cccCchhhHhhhccCCCCCCCHHHHHHHHHHcCCh--------------------
Q 048309 169 GLLVLQFSSTPDARYN---------EYRLSSDFIKEYIFPGGCLPSLSRITSAMAAASSL-------------------- 219 (288)
Q Consensus 169 G~l~~~~~~~~~~~~~---------~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~-------------------- 219 (288)
|++++.+++....... .......|+.+|+||++.+|+..++...++.+ +|
T Consensus 160 G~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~fi~kyiFpgg~lPsl~~~~~~~e~a-gf~v~~~~~~~~hYarTl~~W~ 238 (285)
T d1kpga_ 160 GVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPSIPMVQECASAN-GFTVTRVQSLQPHYAKTLDLWS 238 (285)
T ss_dssp CEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCCCHHHHHHHHHTT-TCEEEEEEECHHHHHHHHHHHH
T ss_pred CcEEEEEEeccCchhhccccCCcchhhhchhhHHHHHhccCCCCCChhhHHHHHHHh-chhhcccccchhhHHHHHHHHH
Confidence 9999999875432211 11223568999999999999999998877665 44
Q ss_pred -------HHHHhhcCChHHHHHHHHHHHHHHhhcccCCccEEEEEEEc
Q 048309 220 -------SKILALGFNEKFIWTWEYYFDYSAAGFKPRTLGNYQIVLSR 260 (288)
Q Consensus 220 -------~~~~~~gf~~~~~~~w~~~~~~~~~~f~~g~~~~~~~~~~k 260 (288)
+++.+.+ .+.++++|.+|+.+|+++|+.|.++.+|++++|
T Consensus 239 ~~f~~~~~ei~~~~-~~~~~rrw~~Yl~~c~~~F~~g~~~v~q~~~~k 285 (285)
T d1kpga_ 239 AALQANKGQAIALQ-SEEVYERYMKYLTGCAEMFRIGYIDVNQFTCQK 285 (285)
T ss_dssp HHHHHTHHHHHHHS-CHHHHHHHHHHHHHHHHHHHTTSEEEEEEEEEC
T ss_pred HHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHCCCCeEEEEEEEC
Confidence 5556664 456778999999999999999999999999987
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=100.00 E-value=3.2e-38 Score=273.87 Aligned_cols=214 Identities=26% Similarity=0.385 Sum_probs=187.8
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEE
Q 048309 46 EDEDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYL 125 (288)
Q Consensus 46 ~~~~l~~a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~ 125 (288)
++.++++||.++++.+++++++++|.+|||||||+|.++..+++..+++|+|||+|+++++.|++++++.++..++.+..
T Consensus 29 ~~~tL~~AQ~~k~~~~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~ 108 (280)
T d2fk8a1 29 PELTLEEAQYAKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLL 108 (280)
T ss_dssp TTCCHHHHHHHHHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhCceeEEEecchHHHHHHHHHHHHhhccccchhhhh
Confidence 45799999999999999999999999999999999999999988778999999999999999999999999988899999
Q ss_pred cccCCCCCCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCCCccccc---------ccCchhhHhhh
Q 048309 126 CDYRQLPKAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPDARYNE---------YRLSSDFIKEY 196 (288)
Q Consensus 126 ~d~~~~~~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~---------~~~~~~~~~~~ 196 (288)
.|..+++ ++||.|++..+++|++.++...+++++.++|||||+++++++......... ..+...|+++|
T Consensus 109 ~d~~~~~--~~fD~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~dfI~ky 186 (280)
T d2fk8a1 109 QGWEDFA--EPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTE 186 (280)
T ss_dssp SCGGGCC--CCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhc--cchhhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEEeeccCcchhhhcccccccccccccchhhhh
Confidence 9887765 789999999999999888899999999999999999999887655432111 11234799999
Q ss_pred ccCCCCCCCHHHHHHHHHHcCCh---------------------------HHHHhhcCChHHHHHHHHHHHHHHhhcccC
Q 048309 197 IFPGGCLPSLSRITSAMAAASSL---------------------------SKILALGFNEKFIWTWEYYFDYSAAGFKPR 249 (288)
Q Consensus 197 i~~~~~~p~~~~~~~~~~~~~~~---------------------------~~~~~~gf~~~~~~~w~~~~~~~~~~f~~g 249 (288)
++|++.+|+..++.+.+++. +| +++.+.+++ .+.++|++|+..|+++|+.|
T Consensus 187 ifPgg~lPS~~~l~~~~e~a-Gf~v~~~~~~~~hYa~TL~~W~~~f~~~~~~i~~~~~~-~~~r~w~~yl~~c~~~F~~~ 264 (280)
T d2fk8a1 187 IFPGGRLPSTEMMVEHGEKA-GFTVPEPLSLRPHYIKTLRIWGDTLQSNKDKAIEVTSE-EVYNRYMKYLRGCEHYFTDE 264 (280)
T ss_dssp TSTTCCCCCHHHHHHHHHHT-TCBCCCCEECHHHHHHHHHHHHHHHHHTHHHHHHHSCH-HHHHHHHHHHHHHHHHHHTT
T ss_pred ccCCCcccchHhhhhhHHhh-ccccceeeecccCHHHHHHHHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999887775 44 566666554 56788999999999999999
Q ss_pred CccEEEEEEEcCCC
Q 048309 250 TLGNYQIVLSRPGN 263 (288)
Q Consensus 250 ~~~~~~~~~~k~~~ 263 (288)
.++++|+++.||+.
T Consensus 265 ~~~~~q~~~~kpg~ 278 (280)
T d2fk8a1 265 MLDCSLVTYLKPGA 278 (280)
T ss_dssp SCEEEEEEEECTTC
T ss_pred CccEEEEEEEcCCc
Confidence 99999999999975
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=100.00 E-value=1.8e-38 Score=276.34 Aligned_cols=211 Identities=25% Similarity=0.374 Sum_probs=184.8
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEE
Q 048309 46 EDEDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYL 125 (288)
Q Consensus 46 ~~~~l~~a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~ 125 (288)
.+.++++||.++++.+++++++++|.+|||||||+|.++..+|++.+++|+|+++|+++++.+++++...|+..++++..
T Consensus 38 ~~~tL~~Aq~~k~~~~~~~l~l~~G~~VLDiGCG~G~~~~~~a~~~g~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~ 117 (291)
T d1kpia_ 38 PDMTLEEAQYAKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRI 117 (291)
T ss_dssp TTCCHHHHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCCCCEEEEecCcchHHHHHHHHhcCcceeeccchHHHHHHHHHHHHhhccchhhhhhh
Confidence 55789999999999999999999999999999999999999998878999999999999999999999999988899999
Q ss_pred cccCCCCCCCCCCEEEEccchhhhCH-------hhHHHHHHHHhcccccCcEEEEEeecCCCccccc---------ccCc
Q 048309 126 CDYRQLPKAKKYDRIISCEMMEAVGH-------EYMEEYFGCCESLLAKDGLLVLQFSSTPDARYNE---------YRLS 189 (288)
Q Consensus 126 ~d~~~~~~~~~fD~I~~~~~l~~~~~-------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~---------~~~~ 189 (288)
.|.... +++||.|+|.++++|++. ++...+++++.++|||||++++++++.++..+.. ....
T Consensus 118 ~d~~~~--~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~~~~~~~~~~~~~~~p~~~~~~ 195 (291)
T d1kpia_ 118 QGWEEF--DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRF 195 (291)
T ss_dssp CCGGGC--CCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHH
T ss_pred hccccc--ccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEeccCcchhhhccCCCchhhccc
Confidence 987653 478999999999999953 4689999999999999999999999877654321 1223
Q ss_pred hhhHhhhccCCCCCCCHHHHHHHHHHcCCh---------------------------HHHHhhcCChHHHHHHHHHHHHH
Q 048309 190 SDFIKEYIFPGGCLPSLSRITSAMAAASSL---------------------------SKILALGFNEKFIWTWEYYFDYS 242 (288)
Q Consensus 190 ~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~---------------------------~~~~~~gf~~~~~~~w~~~~~~~ 242 (288)
..|+.+|+||++.+|+..++...+++. +| +++.+. +.+.+.++|++|+.+|
T Consensus 196 ~~fi~kyiFpgg~lps~~~~~~~~e~~-gl~v~~~~~~~~hYa~TL~~W~~~f~~~~~ei~~l-~g~~~~r~W~~yl~~c 273 (291)
T d1kpia_ 196 IKFILTEIFPGGRLPRISQVDYYSSNA-GWKVERYHRIGANYVPTLNAWADALQAHKDEAIAL-KGQETCDIYMHYLRGC 273 (291)
T ss_dssp HHHHHHHTCTTCCCCCHHHHHHHHHHH-TCEEEEEEECGGGHHHHHHHHHHHHHHTHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred chHHHHHhcCCCCCCCHHHHHhhhccc-ccccceeeeccccHHHHHHHHHHHHHHHHHHHHHh-cChHHHHHHHHHHHHH
Confidence 469999999999999999998887765 43 555555 3456899999999999
Q ss_pred HhhcccCCccEEEEEEEc
Q 048309 243 AAGFKPRTLGNYQIVLSR 260 (288)
Q Consensus 243 ~~~f~~g~~~~~~~~~~k 260 (288)
+++|+.|.++++|+++.|
T Consensus 274 e~~F~~~~~~v~q~~l~K 291 (291)
T d1kpia_ 274 SDLFRDKYTDVCQFTLVK 291 (291)
T ss_dssp HHHHHTTSSEEEEEEEEC
T ss_pred HHHHHCCCCeEEEEEEEC
Confidence 999999999999999987
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.93 E-value=1.2e-24 Score=188.42 Aligned_cols=163 Identities=20% Similarity=0.297 Sum_probs=130.4
Q ss_pred CCHHHHHHHHHHHHHHH----cCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEE
Q 048309 48 EDLKVAQMRKHSLLIEK----ARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRL 123 (288)
Q Consensus 48 ~~l~~a~~~~~~~l~~~----~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~ 123 (288)
.++.+++.+....++.. ..+.++.+|||||||+|..+..++++++++|+|+|+|+.+++.|+++....|+.+++++
T Consensus 42 ~~~~~a~~~~~~~~~~~l~~~~~l~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~ 121 (282)
T d2o57a1 42 DEIREASLRTDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITV 121 (282)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEE
T ss_pred cCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEeCCCCcHHHhhhhccCCcEEEEEeccchhhhhhhcccccccccccccc
Confidence 45666776665555544 46889999999999999999999987788999999999999999999999999889999
Q ss_pred EEcccCCCC-CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCCCcccccccCchhhHhhhccCCCC
Q 048309 124 YLCDYRQLP-KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPDARYNEYRLSSDFIKEYIFPGGC 202 (288)
Q Consensus 124 ~~~d~~~~~-~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 202 (288)
+++|+.+++ ++++||+|++..+++|+ +++..+++++.++|||||++++.++........ .....+...+.. ..
T Consensus 122 ~~~d~~~l~~~~~sfD~V~~~~~l~h~--~d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~--~~~~~~~~~~~~--~~ 195 (282)
T d2o57a1 122 KYGSFLEIPCEDNSYDFIWSQDAFLHS--PDKLKVFQECARVLKPRGVMAITDPMKEDGIDK--SSIQPILDRIKL--HD 195 (282)
T ss_dssp EECCTTSCSSCTTCEEEEEEESCGGGC--SCHHHHHHHHHHHEEEEEEEEEEEEEECTTCCG--GGGHHHHHHHTC--SS
T ss_pred cccccccccccccccchhhccchhhhc--cCHHHHHHHHHHhcCCCcEEEEEEeecCCCCch--hHHHHHHHHhcc--CC
Confidence 999999999 77999999999999999 678999999999999999999987765443211 112233433333 23
Q ss_pred CCCHHHHHHHHHHc
Q 048309 203 LPSLSRITSAMAAA 216 (288)
Q Consensus 203 ~p~~~~~~~~~~~~ 216 (288)
+++.....+.+.+.
T Consensus 196 ~~s~~~~~~~l~~~ 209 (282)
T d2o57a1 196 MGSLGLYRSLAKEC 209 (282)
T ss_dssp CCCHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHc
Confidence 56677777666655
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.90 E-value=1.5e-23 Score=175.75 Aligned_cols=153 Identities=16% Similarity=0.190 Sum_probs=122.3
Q ss_pred HHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CCCC
Q 048309 58 HSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAKK 136 (288)
Q Consensus 58 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~~ 136 (288)
+.++++.++++++.+|||||||+|.++..+++. +++|+|+|+|+.|++.|++++...+. ++++++++|+.+++ ++++
T Consensus 4 ~~~ll~~~~l~~~~rVLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~i~~A~~~~~~~~~-~~i~~~~~d~~~l~~~~~~ 81 (231)
T d1vl5a_ 4 LAKLMQIAALKGNEEVLDVATGGGHVANAFAPF-VKKVVAFDLTEDILKVARAFIEGNGH-QQVEYVQGDAEQMPFTDER 81 (231)
T ss_dssp HHHHHHHHTCCSCCEEEEETCTTCHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHTTC-CSEEEEECCC-CCCSCTTC
T ss_pred HHHHHHhcCCCCcCEEEEecccCcHHHHHHHHh-CCEEEEEECCHHHHhhhhhccccccc-ccccccccccccccccccc
Confidence 567888999999999999999999999999986 67999999999999999999998888 58999999999998 7899
Q ss_pred CCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCCCcccccccCchhhHhhhc-cCCCCCCCHHHHHHHHHH
Q 048309 137 YDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPDARYNEYRLSSDFIKEYI-FPGGCLPSLSRITSAMAA 215 (288)
Q Consensus 137 fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~p~~~~~~~~~~~ 215 (288)
||+|+|..+++|+ +++..+++++.++|||||++++.++..+...... ....+..... .......+..++.+.+++
T Consensus 82 fD~v~~~~~l~~~--~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 157 (231)
T d1vl5a_ 82 FHIVTCRIAAHHF--PNPASFVSEAYRVLKKGGQLLLVDNSAPENDAFD--VFYNYVEKERDYSHHRAWKKSDWLKMLEE 157 (231)
T ss_dssp EEEEEEESCGGGC--SCHHHHHHHHHHHEEEEEEEEEEEEEBCSSHHHH--HHHHHHHHHHCTTCCCCCBHHHHHHHHHH
T ss_pred ccccccccccccc--CCHHHHHHHHHHhcCCCcEEEEEeCCCCCCHHHH--HHHHHHHhhcccCcccCCCHHHHHHHHHH
Confidence 9999999999999 7889999999999999999999887765432111 1112222222 222234456667666665
Q ss_pred c
Q 048309 216 A 216 (288)
Q Consensus 216 ~ 216 (288)
+
T Consensus 158 a 158 (231)
T d1vl5a_ 158 A 158 (231)
T ss_dssp H
T ss_pred C
Confidence 5
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.90 E-value=2.6e-23 Score=176.23 Aligned_cols=122 Identities=17% Similarity=0.168 Sum_probs=113.0
Q ss_pred HHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCC
Q 048309 54 QMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPK 133 (288)
Q Consensus 54 ~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~ 133 (288)
...++..+++.+.+.+|.+|||||||+|..+..+++..+++|+|||+|+.|++.|+++++..|+.++++++++|+.++..
T Consensus 18 ~~~~~~~l~~~~~l~pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~~~ 97 (245)
T d1nkva_ 18 TEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVA 97 (245)
T ss_dssp CHHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCC
T ss_pred CHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhccc
Confidence 34577889999999999999999999999999998876789999999999999999999999998889999999999877
Q ss_pred CCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 134 AKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 134 ~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
+++||+|+|..+++|+ .++..+++++.++|||||++++.+..
T Consensus 98 ~~~fD~v~~~~~~~~~--~d~~~~l~~~~r~LkPGG~l~i~~~~ 139 (245)
T d1nkva_ 98 NEKCDVAACVGATWIA--GGFAGAEELLAQSLKPGGIMLIGEPY 139 (245)
T ss_dssp SSCEEEEEEESCGGGT--SSSHHHHHHHTTSEEEEEEEEEEEEE
T ss_pred cCceeEEEEEehhhcc--CCHHHHHHHHHHHcCcCcEEEEEecc
Confidence 7899999999999999 68899999999999999999998765
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.90 E-value=2.5e-23 Score=175.08 Aligned_cols=120 Identities=23% Similarity=0.320 Sum_probs=110.0
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CCC
Q 048309 57 KHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAK 135 (288)
Q Consensus 57 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~ 135 (288)
....+++.+++++|.+|||||||+|.++..+++. +.+|+|+|+|+.|++.|++++...++ +++.++++|+++++ +++
T Consensus 4 ~~~~l~~~~~~~~~~rILDiGcGtG~~~~~la~~-~~~v~gvD~S~~~l~~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~ 81 (234)
T d1xxla_ 4 SLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPY-VQECIGVDATKEMVEVASSFAQEKGV-ENVRFQQGTAESLPFPDD 81 (234)
T ss_dssp HHHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHHTC-CSEEEEECBTTBCCSCTT
T ss_pred HHHHHHHHhCCCCCCEEEEeCCcCcHHHHHHHHh-CCeEEEEeCChhhhhhhhhhhccccc-cccccccccccccccccc
Confidence 3456889999999999999999999999999986 67999999999999999999998888 58999999999998 789
Q ss_pred CCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCCC
Q 048309 136 KYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPD 180 (288)
Q Consensus 136 ~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 180 (288)
+||+|+|..+++|+ +++..+++++.++|||||++++.++..+.
T Consensus 82 ~fD~v~~~~~l~~~--~d~~~~l~~~~r~LkpgG~~~~~~~~~~~ 124 (234)
T d1xxla_ 82 SFDIITCRYAAHHF--SDVRKAVREVARVLKQDGRFLLVDHYAPE 124 (234)
T ss_dssp CEEEEEEESCGGGC--SCHHHHHHHHHHHEEEEEEEEEEEECBCS
T ss_pred ccceeeeeceeecc--cCHHHHHHHHHHeeCCCcEEEEEEcCCCC
Confidence 99999999999999 78899999999999999999998776554
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.88 E-value=5.8e-22 Score=164.89 Aligned_cols=122 Identities=19% Similarity=0.359 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCC
Q 048309 52 VAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQL 131 (288)
Q Consensus 52 ~a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~ 131 (288)
......+..++.+. ++++.+|||||||+|.++..+++. +.+|+|+|+|+.|++.|++++...+. ++.++.+|+.++
T Consensus 21 ~~~~~~~~~~~~~~-l~~~~~ILDiGcG~G~~~~~la~~-~~~v~giD~S~~~i~~ak~~~~~~~~--~~~~~~~d~~~l 96 (226)
T d1ve3a1 21 RSRIETLEPLLMKY-MKKRGKVLDLACGVGGFSFLLEDY-GFEVVGVDISEDMIRKAREYAKSRES--NVEFIVGDARKL 96 (226)
T ss_dssp HHHHHHHHHHHHHS-CCSCCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTC--CCEEEECCTTSC
T ss_pred HHHHHHHHHHHHHh-cCCCCEEEEECCCcchhhhhHhhh-hcccccccccccchhhhhhhhccccc--cccccccccccc
Confidence 34444555566553 357789999999999999999985 78999999999999999999988774 578999999999
Q ss_pred C-CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 132 P-KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 132 ~-~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
+ ++++||+|+|..+++|++..++.++++++.++|||||++++...+
T Consensus 97 ~~~~~~fD~I~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~lii~~~~ 143 (226)
T d1ve3a1 97 SFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTD 143 (226)
T ss_dssp CSCTTCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred cccCcCceEEEEecchhhCChhHHHHHHHHHHHHcCcCcEEEEEEcC
Confidence 8 779999999999999998778999999999999999999997654
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.88 E-value=1.5e-22 Score=171.54 Aligned_cols=141 Identities=18% Similarity=0.301 Sum_probs=116.2
Q ss_pred HHHhhhhhcCCCCCCCH--HHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHH
Q 048309 34 AHRNISYHYDLDEDEDL--KVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMK 111 (288)
Q Consensus 34 ~~~~~a~~Yd~~~~~~l--~~a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~ 111 (288)
.|+.+++.||..-.... ..++...+..+++.....++.+|||||||+|..+..+++. +.+|+|||+|+.|++.|+++
T Consensus 4 ~~~~~a~~Yd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLDiGcGtG~~~~~l~~~-~~~v~gvD~s~~mi~~a~~~ 82 (251)
T d1wzna1 4 LYTLLAEYYDTIYRRRIERVKAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAER-GYEVVGLDLHEEMLRVARRK 82 (251)
T ss_dssp GGTTTGGGHHHHTHHHHHTHHHHHHHHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHH
T ss_pred hhHhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCCccchhhccc-ceEEEEEeeccccccccccc
Confidence 35667777775311111 1234456677888888888889999999999999999986 78999999999999999999
Q ss_pred HHHcCCCCceEEEEcccCCCCCCCCCCEEEEc-cchhhhCHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 112 VNEAGLQDHIRLYLCDYRQLPKAKKYDRIISC-EMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 112 ~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~~~-~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
+...++ +++++++|+++++.+++||+|+|. .+++|++.+++..++++++++|||||++++....
T Consensus 83 ~~~~~~--~i~~~~~d~~~l~~~~~fD~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~~~~ 147 (251)
T d1wzna1 83 AKERNL--KIEFLQGDVLEIAFKNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFPC 147 (251)
T ss_dssp HHHTTC--CCEEEESCGGGCCCCSCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred cccccc--cchheehhhhhcccccccchHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEEecc
Confidence 988775 699999999999966799999996 5788887788899999999999999999986543
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.86 E-value=9.2e-22 Score=166.55 Aligned_cols=138 Identities=20% Similarity=0.282 Sum_probs=110.6
Q ss_pred HHhhhhhcCCCCCCCH-HHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHH
Q 048309 35 HRNISYHYDLDEDEDL-KVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVN 113 (288)
Q Consensus 35 ~~~~a~~Yd~~~~~~l-~~a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~ 113 (288)
|+.+|..||......+ .......+..++....+ ++.+|||||||+|..+..+++. +.+|+|+|+|+.|++.|++++.
T Consensus 3 y~~~A~~YD~l~~~~~~y~~~~~~~~~~~~~~~~-~~~~vLDiGCG~G~~~~~l~~~-g~~v~GvD~S~~ml~~A~~~~~ 80 (246)
T d1y8ca_ 3 YNKFAHIYDKLIRADVDYKKWSDFIIEKCVENNL-VFDDYLDLACGTGNLTENLCPK-FKNTWAVDLSQEMLSEAENKFR 80 (246)
T ss_dssp HHHHHHHHHHHTTCSCCHHHHHHHHHHHHHTTTC-CTTEEEEETCTTSTTHHHHGGG-SSEEEEECSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCC-CCCeEEEEeCcCCHHHHHHHHh-CCccEeeccchhhhhhcccccc
Confidence 6778888884322222 23344445555555443 4579999999999999999986 7799999999999999999998
Q ss_pred HcCCCCceEEEEcccCCCCCCCCCCEEEEc-cchhhh-CHhhHHHHHHHHhcccccCcEEEEEee
Q 048309 114 EAGLQDHIRLYLCDYRQLPKAKKYDRIISC-EMMEAV-GHEYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 114 ~~g~~~~v~~~~~d~~~~~~~~~fD~I~~~-~~l~~~-~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
..++ +++++++|+.+++.+++||+|+|. .+++|+ +.+++..++++++++|+|||.|++...
T Consensus 81 ~~~~--~v~~~~~d~~~~~~~~~fD~i~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~ 143 (246)
T d1y8ca_ 81 SQGL--KPRLACQDISNLNINRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDIN 143 (246)
T ss_dssp HTTC--CCEEECCCGGGCCCSCCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred ccCc--cceeeccchhhhcccccccccceeeeeeeccCCHHHHHHHHHHHHHhCCCCeEEEEEeC
Confidence 8876 699999999998866899999986 577777 567889999999999999999998654
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.86 E-value=4.2e-21 Score=157.30 Aligned_cols=116 Identities=20% Similarity=0.287 Sum_probs=103.5
Q ss_pred HHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCEE
Q 048309 61 LIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRI 140 (288)
Q Consensus 61 l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I 140 (288)
++..+...++.+|||||||+|..+..++++ +.+|+|+|+|+.+++.++++.+..++ +++++...|+.++.++++||+|
T Consensus 22 ~~~~~~~~~~grvLDiGcG~G~~~~~la~~-g~~v~gvD~s~~~l~~a~~~~~~~~~-~~~~~~~~d~~~~~~~~~fD~I 99 (198)
T d2i6ga1 22 VLAAAKVVAPGRTLDLGCGNGRNSLYLAAN-GYDVTAWDKNPASMANLERIKAAEGL-DNLQTDLVDLNTLTFDGEYDFI 99 (198)
T ss_dssp HHHHHTTSCSCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTC-TTEEEEECCTTTCCCCCCEEEE
T ss_pred HHHHcccCCCCcEEEECCCCCHHHHHHHHH-hhhhccccCcHHHHHHHHHHhhhccc-cchhhhheecccccccccccEE
Confidence 344444445569999999999999999996 88999999999999999999999988 4899999999998877899999
Q ss_pred EEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecC
Q 048309 141 ISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSST 178 (288)
Q Consensus 141 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 178 (288)
++..+++|+++++..++++++.++|+|||++++.+...
T Consensus 100 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~ 137 (198)
T d2i6ga1 100 LSTVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVAAMD 137 (198)
T ss_dssp EEESCGGGSCTTHHHHHHHHHHHTEEEEEEEEEEEEBC
T ss_pred EEeeeeecCCHHHHHHHHHHHHHHcCCCcEEEEEEecC
Confidence 99999999988889999999999999999999977653
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.85 E-value=2.1e-21 Score=163.58 Aligned_cols=136 Identities=18% Similarity=0.243 Sum_probs=108.5
Q ss_pred ChHHHHHhhhhhcCCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHH
Q 048309 30 SLAQAHRNISYHYDLDEDEDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAE 109 (288)
Q Consensus 30 ~~~~~~~~~a~~Yd~~~~~~l~~a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~ 109 (288)
.....|+.++..||..............+..++.... .++.+|||+|||+|.++..+++. +++|+|+|+|+.|++.|+
T Consensus 4 ~~~~~yd~~a~~Yd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~-~~~v~giD~s~~~l~~a~ 81 (246)
T d2avna1 4 RSWEFYDRIARAYDSMYETPKWKLYHRLIGSFLEEYL-KNPCRVLDLGGGTGKWSLFLQER-GFEVVLVDPSKEMLEVAR 81 (246)
T ss_dssp CHHHHHHHHHHHHGGGGCSHHHHHHHHHHHHHHHHHC-CSCCEEEEETCTTCHHHHHHHTT-TCEEEEEESCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhc-CCCCEEEEECCCCchhccccccc-ceEEEEeecccccccccc
Confidence 3456788899999864333333344455555555544 36779999999999999999985 789999999999999998
Q ss_pred HHHHHcCCCCceEEEEcccCCCC-CCCCCCEEEEc-cchhhhCHhhHHHHHHHHhcccccCcEEEEEee
Q 048309 110 MKVNEAGLQDHIRLYLCDYRQLP-KAKKYDRIISC-EMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 110 ~~~~~~g~~~~v~~~~~d~~~~~-~~~~fD~I~~~-~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
++. . ..++.+|+.+++ ++++||+|+|. .+++|+ +++.++++++.++|||||.+++...
T Consensus 82 ~~~----~---~~~~~~~~~~l~~~~~~fD~ii~~~~~~~~~--~d~~~~l~~i~r~Lk~gG~~ii~~~ 141 (246)
T d2avna1 82 EKG----V---KNVVEAKAEDLPFPSGAFEAVLALGDVLSYV--ENKDKAFSEIRRVLVPDGLLIATVD 141 (246)
T ss_dssp HHT----C---SCEEECCTTSCCSCTTCEEEEEECSSHHHHC--SCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccc----c---cccccccccccccccccccceeeecchhhhh--hhHHHHHHHHHhhcCcCcEEEEEEC
Confidence 762 2 246789999998 77999999986 578999 6788999999999999999999764
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.84 E-value=6.5e-21 Score=159.20 Aligned_cols=124 Identities=17% Similarity=0.202 Sum_probs=106.1
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc---cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC
Q 048309 56 RKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ---TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP 132 (288)
Q Consensus 56 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~---~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~ 132 (288)
+.+..+++.. .+++.+|||+|||+|..+..+++. ++.+|+|+|+|+.|++.|+++++..+...++++..+|+.+++
T Consensus 27 ~~i~~~~~~~-~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~ 105 (225)
T d1im8a_ 27 TAIGMLAERF-VTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVE 105 (225)
T ss_dssp HHHHHHHHHH-CCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCC
T ss_pred HHHHHHHHHh-cCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccc
Confidence 3444444443 357889999999999999999874 678999999999999999999988877678889999988776
Q ss_pred CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCCCc
Q 048309 133 KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPDA 181 (288)
Q Consensus 133 ~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 181 (288)
...+|+|++..+++|++.+++.+++++++++|||||.+++.+...+..
T Consensus 106 -~~~~d~i~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~ 153 (225)
T d1im8a_ 106 -IKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFED 153 (225)
T ss_dssp -CCSEEEEEEESCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEEECCCSS
T ss_pred -cccceeeEEeeeccccChhhHHHHHHHHHHhCCCCceeeccccccccc
Confidence 357899999999999988899999999999999999999988776554
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.84 E-value=1e-21 Score=163.82 Aligned_cols=114 Identities=14% Similarity=0.281 Sum_probs=100.6
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CCCCCCEEEEcc
Q 048309 66 RVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAKKYDRIISCE 144 (288)
Q Consensus 66 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~~fD~I~~~~ 144 (288)
...++.+|||||||+|.++..+++....+|+|||+|+.|++.|+++++..+. .+++++++|+.+++ ++++||+|++..
T Consensus 57 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~~-~~~~f~~~d~~~~~~~~~~fD~I~~~~ 135 (222)
T d2ex4a1 57 NKTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGK-RVRNYFCCGLQDFTPEPDSYDVIWIQW 135 (222)
T ss_dssp -CCCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGG-GEEEEEECCGGGCCCCSSCEEEEEEES
T ss_pred CCCCCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhccccccccccc-ccccccccccccccccccccccccccc
Confidence 4566789999999999999998766556899999999999999999887776 47899999999988 678999999999
Q ss_pred chhhhCHhhHHHHHHHHhcccccCcEEEEEeecCCC
Q 048309 145 MMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPD 180 (288)
Q Consensus 145 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 180 (288)
+++|++.++..++++++.++|+|||.+++.+...+.
T Consensus 136 ~l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~ 171 (222)
T d2ex4a1 136 VIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQE 171 (222)
T ss_dssp CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSS
T ss_pred ccccchhhhhhhHHHHHHHhcCCcceEEEEEccccc
Confidence 999998777889999999999999999998766544
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.83 E-value=7.3e-21 Score=154.82 Aligned_cols=121 Identities=17% Similarity=0.104 Sum_probs=105.0
Q ss_pred HHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCC-----------CCceEEEEc
Q 048309 58 HSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGL-----------QDHIRLYLC 126 (288)
Q Consensus 58 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~-----------~~~v~~~~~ 126 (288)
+...+..+.++++.+|||+|||+|..+..||++ |.+|+|+|+|+.|++.|+++++..+. ..+++++++
T Consensus 9 ~~~~~~~l~~~~~~rvLd~GCG~G~~a~~la~~-G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (201)
T d1pjza_ 9 LQQYWSSLNVVPGARVLVPLCGKSQDMSWLSGQ-GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCG 87 (201)
T ss_dssp HHHHHHHHCCCTTCEEEETTTCCSHHHHHHHHH-CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEE
T ss_pred HHHHHHHcCCCCCCEEEEecCcCCHHHHHHHHc-CCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecc
Confidence 555677888999999999999999999999997 89999999999999999998865432 134688999
Q ss_pred ccCCCC--CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCC
Q 048309 127 DYRQLP--KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTP 179 (288)
Q Consensus 127 d~~~~~--~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 179 (288)
|+.+++ ...+||+|++..+++|+++++...+++++.++|||||.+++......
T Consensus 88 d~~~l~~~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~~~~~ 142 (201)
T d1pjza_ 88 DFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYD 142 (201)
T ss_dssp CCSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSC
T ss_pred cccccccccccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEEcccc
Confidence 999887 45789999999999999888899999999999999999988766543
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.82 E-value=8.4e-20 Score=155.16 Aligned_cols=119 Identities=18% Similarity=0.239 Sum_probs=105.9
Q ss_pred HHHHHHcCCCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCC
Q 048309 59 SLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKY 137 (288)
Q Consensus 59 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~f 137 (288)
..+++.++..+..+|||||||+|.++..++++ ++.+++++|+ +++++.+++++...++..+++++.+|+.+..+ .+|
T Consensus 70 ~~~~~~~d~~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~~~-~~~ 147 (253)
T d1tw3a2 70 DAPAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEPLP-RKA 147 (253)
T ss_dssp HHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSCCS-SCE
T ss_pred HHHHhhcCCccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhcccchhhccccchhhcc-cch
Confidence 56778888888899999999999999999988 7889999998 67999999999999998899999999876433 579
Q ss_pred CEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCC
Q 048309 138 DRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTP 179 (288)
Q Consensus 138 D~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 179 (288)
|+|++..++||+++++...++++++++|||||++++.+...+
T Consensus 148 D~v~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~~~~ 189 (253)
T d1tw3a2 148 DAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDL 189 (253)
T ss_dssp EEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBC
T ss_pred hheeeccccccCCchhhHHHHHHHHHhcCCCcEEEEEeccCC
Confidence 999999999999888888999999999999999999876543
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.82 E-value=1.4e-20 Score=155.08 Aligned_cols=96 Identities=22% Similarity=0.281 Sum_probs=85.2
Q ss_pred CCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CCCCCCEEEEccchh
Q 048309 69 KEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAKKYDRIISCEMME 147 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~~fD~I~~~~~l~ 147 (288)
++.+|||||||+|.++..++ +++|||+|+.+++.|+++ +++++++|+++++ ++++||+|+|..+++
T Consensus 36 ~~~~vLDiGcG~G~~~~~~~-----~~~giD~s~~~~~~a~~~--------~~~~~~~d~~~l~~~~~~fD~I~~~~~l~ 102 (208)
T d1vlma_ 36 PEGRGVEIGVGTGRFAVPLK-----IKIGVEPSERMAEIARKR--------GVFVLKGTAENLPLKDESFDFALMVTTIC 102 (208)
T ss_dssp CSSCEEEETCTTSTTHHHHT-----CCEEEESCHHHHHHHHHT--------TCEEEECBTTBCCSCTTCEEEEEEESCGG
T ss_pred CCCeEEEECCCCcccccccc-----eEEEEeCChhhccccccc--------ccccccccccccccccccccccccccccc
Confidence 56689999999999887663 468999999999998863 5899999999998 778999999999999
Q ss_pred hhCHhhHHHHHHHHhcccccCcEEEEEeecCC
Q 048309 148 AVGHEYMEEYFGCCESLLAKDGLLVLQFSSTP 179 (288)
Q Consensus 148 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 179 (288)
|+ +++..+++++.++|+|||.+++.++...
T Consensus 103 h~--~d~~~~l~~~~~~L~pgG~l~i~~~~~~ 132 (208)
T d1vlma_ 103 FV--DDPERALKEAYRILKKGGYLIVGIVDRE 132 (208)
T ss_dssp GS--SCHHHHHHHHHHHEEEEEEEEEEEECSS
T ss_pred cc--cccccchhhhhhcCCCCceEEEEecCCc
Confidence 99 6789999999999999999999887544
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.82 E-value=4.8e-20 Score=156.78 Aligned_cols=127 Identities=11% Similarity=0.168 Sum_probs=109.2
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccC
Q 048309 50 LKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYR 129 (288)
Q Consensus 50 l~~a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~ 129 (288)
+..........+++.+...++.+|||+|||+|.++..++.....+|++||+|+.|++.|+++.... ++++++++|++
T Consensus 74 ~~~~d~~~s~~fl~~l~~~~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~~---~~~~~~~~d~~ 150 (254)
T d1xtpa_ 74 VHDVDIEGSRNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM---PVGKFILASME 150 (254)
T ss_dssp GHHHHHHHHHHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTS---SEEEEEESCGG
T ss_pred cchhhHHHHHHHHhhCCCCCCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhcccccc---ccceeEEcccc
Confidence 344555666788888888888999999999999999988764568999999999999999887543 46899999999
Q ss_pred CCC-CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCC
Q 048309 130 QLP-KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTP 179 (288)
Q Consensus 130 ~~~-~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 179 (288)
+++ .+++||+|++..+++|++.++..++++++.++|+|||.+++.+....
T Consensus 151 ~~~~~~~~fD~I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e~~~~ 201 (254)
T d1xtpa_ 151 TATLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCST 201 (254)
T ss_dssp GCCCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC-
T ss_pred ccccCCCccceEEeeccccccchhhhHHHHHHHHHhcCCCcEEEEEecCCC
Confidence 998 67899999999999999877888999999999999999999876544
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.81 E-value=9.1e-20 Score=154.80 Aligned_cols=110 Identities=16% Similarity=0.203 Sum_probs=96.9
Q ss_pred CCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC--CCCCCCEEEEcc
Q 048309 67 VSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP--KAKKYDRIISCE 144 (288)
Q Consensus 67 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~--~~~~fD~I~~~~ 144 (288)
.+++.+|||||||+|..+..+++....+|+|+|+|+.|++.|++++...+...++.+.++|+...+ ..++||+|+|.+
T Consensus 22 ~~~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~~~~ 101 (252)
T d1ri5a_ 22 TKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQF 101 (252)
T ss_dssp CCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEES
T ss_pred CCCcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccceEEEEcc
Confidence 457889999999999999999886446899999999999999999988877678999999997655 567899999999
Q ss_pred chhhh--CHhhHHHHHHHHhcccccCcEEEEEee
Q 048309 145 MMEAV--GHEYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 145 ~l~~~--~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
+++|+ +.++...+++++.++|||||++++...
T Consensus 102 ~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~ 135 (252)
T d1ri5a_ 102 SFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVP 135 (252)
T ss_dssp CGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred eeeecCCCHHHHHHHHHHHhceeCCCCEEEEEec
Confidence 99997 456788999999999999999998654
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.79 E-value=3.8e-19 Score=153.38 Aligned_cols=116 Identities=18% Similarity=0.279 Sum_probs=101.0
Q ss_pred HHHHHHHHc-CCCCCCEEEEECCcccHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCC
Q 048309 57 KHSLLIEKA-RVSKEHEVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPK 133 (288)
Q Consensus 57 ~~~~l~~~~-~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~ 133 (288)
.+..+++.+ .+.++.+|||||||+|.++..+++. .+.+|+|+|+|+.+++.|++++...+. +++++++|+.+++.
T Consensus 14 ~l~~l~~~~~~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~--~~~f~~~d~~~~~~ 91 (281)
T d2gh1a1 14 YVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY--DSEFLEGDATEIEL 91 (281)
T ss_dssp HHHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSS--EEEEEESCTTTCCC
T ss_pred HHHHHHHHHhccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccc--cccccccccccccc
Confidence 345565554 4567889999999999999999876 357899999999999999999988765 79999999999885
Q ss_pred CCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEee
Q 048309 134 AKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 134 ~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
+++||+|+|..+++|+ +++..+++++.++|||||.+++.+.
T Consensus 92 ~~~fD~v~~~~~l~~~--~d~~~~l~~~~~~LkpgG~lii~~~ 132 (281)
T d2gh1a1 92 NDKYDIAICHAFLLHM--TTPETMLQKMIHSVKKGGKIICFEP 132 (281)
T ss_dssp SSCEEEEEEESCGGGC--SSHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred cCCceEEEEehhhhcC--CCHHHHHHHHHHHcCcCcEEEEEEC
Confidence 5789999999999999 7788999999999999999998764
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.79 E-value=3e-19 Score=144.76 Aligned_cols=112 Identities=20% Similarity=0.285 Sum_probs=100.0
Q ss_pred HHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CCCC
Q 048309 58 HSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAKK 136 (288)
Q Consensus 58 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~~ 136 (288)
...++..+.+.++.+|||+|||+|.++..+++. ..+|+|+|+++.+++.|+++++..|+.++++++++|+.+.. ....
T Consensus 22 r~~il~~l~~~~g~~VLDiGcGsG~~s~~lA~~-~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~~~ 100 (186)
T d1l3ia_ 22 RCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGR-VRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPD 100 (186)
T ss_dssp HHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCC
T ss_pred HHHHHHhcCCCCCCEEEEEECCeEccccccccc-ceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcccccCC
Confidence 356778889999999999999999999999886 67999999999999999999999999889999999998766 5689
Q ss_pred CCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 137 YDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 137 fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
||.|++....+++ ..+++.+.+.|||||++++..
T Consensus 101 ~D~v~~~~~~~~~-----~~~~~~~~~~LkpgG~lvi~~ 134 (186)
T d1l3ia_ 101 IDIAVVGGSGGEL-----QEILRIIKDKLKPGGRIIVTA 134 (186)
T ss_dssp EEEEEESCCTTCH-----HHHHHHHHHTEEEEEEEEEEE
T ss_pred cCEEEEeCccccc-----hHHHHHHHHHhCcCCEEEEEe
Confidence 9999998876665 678999999999999998754
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.79 E-value=1.1e-19 Score=152.03 Aligned_cols=121 Identities=21% Similarity=0.142 Sum_probs=103.4
Q ss_pred HHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcC----------------CCCce
Q 048309 58 HSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAG----------------LQDHI 121 (288)
Q Consensus 58 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g----------------~~~~v 121 (288)
...+.+.+.+.++.+|||+|||+|..+..||+. |.+|||||+|+.+++.|++.....+ ...++
T Consensus 34 ~~~~~~~l~~~~~~rvLd~GCG~G~~a~~LA~~-G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 112 (229)
T d2bzga1 34 KKHLDTFLKGKSGLRVFFPLCGKAVEMKWFADR-GHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNI 112 (229)
T ss_dssp HHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHT-TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSE
T ss_pred HHHHHHhcCCCCCCEEEEeCCCCcHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcE
Confidence 344445567778899999999999999999996 8899999999999999988764321 11468
Q ss_pred EEEEcccCCCC--CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCC
Q 048309 122 RLYLCDYRQLP--KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTP 179 (288)
Q Consensus 122 ~~~~~d~~~~~--~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 179 (288)
+++++|+.+++ ..+.||+|+...+++|+++++...+++++.++|||||++++.++...
T Consensus 113 ~~~~~d~~~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~~~~ 172 (229)
T d2bzga1 113 SLYCCSIFDLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVLSYD 172 (229)
T ss_dssp EEEESCGGGGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECC
T ss_pred EEEEcchhhccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEcccC
Confidence 99999998876 56899999999999999989999999999999999999988877654
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.77 E-value=6.8e-19 Score=146.84 Aligned_cols=102 Identities=20% Similarity=0.295 Sum_probs=91.0
Q ss_pred CCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCEEEEccchhh
Q 048309 69 KEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMMEA 148 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~~~~~l~~ 148 (288)
.+.+|||||||+|.++..+++. +.+|+|||+|+++++.|+++.. .+++++.+|+.+.+.+++||+|++..+++|
T Consensus 20 ~~~~VLDiGcG~G~~~~~l~~~-g~~v~giD~s~~~i~~a~~~~~-----~~~~~~~~~~~~~~~~~~fD~I~~~~vleh 93 (225)
T d2p7ia1 20 RPGNLLELGSFKGDFTSRLQEH-FNDITCVEASEEAISHAQGRLK-----DGITYIHSRFEDAQLPRRYDNIVLTHVLEH 93 (225)
T ss_dssp CSSCEEEESCTTSHHHHHHTTT-CSCEEEEESCHHHHHHHHHHSC-----SCEEEEESCGGGCCCSSCEEEEEEESCGGG
T ss_pred CCCcEEEEeCCCcHHHHHHHHc-CCeEEEEeCcHHHhhhhhcccc-----cccccccccccccccccccccccccceeEe
Confidence 4668999999999999999876 6799999999999999987642 469999999999887789999999999999
Q ss_pred hCHhhHHHHHHHHh-cccccCcEEEEEeecC
Q 048309 149 VGHEYMEEYFGCCE-SLLAKDGLLVLQFSST 178 (288)
Q Consensus 149 ~~~~~~~~~l~~~~-~~LkpgG~l~~~~~~~ 178 (288)
+ .++..++.++. ++|+|||.+++.....
T Consensus 94 ~--~d~~~~l~~i~~~~Lk~gG~l~i~~pn~ 122 (225)
T d2p7ia1 94 I--DDPVALLKRINDDWLAEGGRLFLVCPNA 122 (225)
T ss_dssp C--SSHHHHHHHHHHTTEEEEEEEEEEEECT
T ss_pred c--CCHHHHHHHHHHHhcCCCceEEEEeCCc
Confidence 9 78899999998 8999999999976543
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.76 E-value=5.3e-18 Score=144.14 Aligned_cols=117 Identities=18% Similarity=0.171 Sum_probs=104.5
Q ss_pred HHHHHHcCCCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCC
Q 048309 59 SLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKY 137 (288)
Q Consensus 59 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~f 137 (288)
..+++.++..+..+|||||||+|.++..+++. +..+++++|+ +++++.++++++..++.+++.++.+|+.+.. +.+|
T Consensus 71 ~~~~~~~d~~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~~~-p~~~ 148 (256)
T d1qzza2 71 EAPADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKPL-PVTA 148 (256)
T ss_dssp HHHHHTSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCC-SCCE
T ss_pred HHHHhcCCCccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeeccccc-cccc
Confidence 55677777778889999999999999999998 7889999997 8899999999999999889999999998633 3569
Q ss_pred CEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 138 DRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 138 D~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
|+|++..++|++++++..++++++++.|||||++++.+..
T Consensus 149 D~v~~~~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d~~ 188 (256)
T d1qzza2 149 DVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRA 188 (256)
T ss_dssp EEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred hhhhccccccccCcHHHHHHHHHHHhhcCCcceeEEEEec
Confidence 9999999999998888889999999999999999998764
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.75 E-value=6.3e-19 Score=145.80 Aligned_cols=150 Identities=21% Similarity=0.189 Sum_probs=114.6
Q ss_pred hhHHHHHhhhhhcCChHHHHHhhhhhcCCCCC-------CCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHH
Q 048309 16 NQKSYFLRHISRKNSLAQAHRNISYHYDLDED-------EDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVV 88 (288)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~a~~Yd~~~~-------~~l~~a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la 88 (288)
.+....++..+|+.++...+. .+..|+.... ......+-..+..+++.+++++|.+|||||||+|..+..++
T Consensus 16 ~~v~~a~~~v~Re~Fv~~~~~-~~~~~~d~~~~~~~~~~~~~~i~~P~~~a~~l~~l~l~~g~~VLdiG~GtG~~s~~la 94 (213)
T d1dl5a1 16 DHIAKAFLEIPREEFLTKSYP-LSYVYEDIVLVSYDDGEEYSTSSQPSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMS 94 (213)
T ss_dssp HHHHHHHHHSCGGGGCSSCCC-HHHHTSSSCEEEEECSSCEEEECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHH
T ss_pred HHHHHHHHcCCHHHcCCchhh-hhhhccCcccCcccCCccceeeccchhhHHHHHhhhccccceEEEecCccchhHHHHH
Confidence 355666677777777765543 2334543210 00001123456778999999999999999999999999998
Q ss_pred Hc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CCCCCCEEEEccchhhhCHhhHHHHHHHHhccc
Q 048309 89 RQ--TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLL 165 (288)
Q Consensus 89 ~~--~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~L 165 (288)
+. +...|+++|+++++++.|+++++..++ .++.++++|..+.. ..++||+|++..++++++. .+.+.|
T Consensus 95 ~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~-~n~~~~~~d~~~~~~~~~~fD~I~~~~~~~~~p~--------~l~~~L 165 (213)
T d1dl5a1 95 RVVGEKGLVVSVEYSRKICEIAKRNVERLGI-ENVIFVCGDGYYGVPEFSPYDVIFVTVGVDEVPE--------TWFTQL 165 (213)
T ss_dssp HHHCTTCEEEEEESCHHHHHHHHHHHHHTTC-CSEEEEESCGGGCCGGGCCEEEEEECSBBSCCCH--------HHHHHE
T ss_pred HHhCCCCcEEEeecchhhHHHhhhhHhhhcc-cccccccCchHHccccccchhhhhhhccHHHhHH--------HHHHhc
Confidence 86 456899999999999999999999888 58999999998765 6678999999999998852 345779
Q ss_pred ccCcEEEEEe
Q 048309 166 AKDGLLVLQF 175 (288)
Q Consensus 166 kpgG~l~~~~ 175 (288)
||||++++..
T Consensus 166 kpGG~lv~pv 175 (213)
T d1dl5a1 166 KEGGRVIVPI 175 (213)
T ss_dssp EEEEEEEEEB
T ss_pred CCCcEEEEEE
Confidence 9999998843
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.74 E-value=1.4e-17 Score=135.67 Aligned_cols=115 Identities=23% Similarity=0.428 Sum_probs=99.0
Q ss_pred HHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCC-ceEEEEcccCCCCCCCCC
Q 048309 59 SLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQD-HIRLYLCDYRQLPKAKKY 137 (288)
Q Consensus 59 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~-~v~~~~~d~~~~~~~~~f 137 (288)
+.+++.+...++.+|||+|||+|.++..+++. ..+|+++|+|+.+++.|+++++.+++.. ++++..+|+.+...+++|
T Consensus 42 ~lLi~~l~~~~~~~VLDiGcG~G~~~~~la~~-~~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~~~~~~f 120 (194)
T d1dusa_ 42 KILVENVVVDKDDDILDLGCGYGVIGIALADE-VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDRKY 120 (194)
T ss_dssp HHHHHHCCCCTTCEEEEETCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTSCE
T ss_pred HHHHHhCCcCCCCeEEEEeecCChhHHHHHhh-ccccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhhhccCCc
Confidence 34678888889999999999999999999875 6799999999999999999999888753 589999999875567899
Q ss_pred CEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 138 DRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 138 D~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
|+|++..++++. .+....+++++.++|+|||.+++..
T Consensus 121 D~Ii~~~p~~~~-~~~~~~~l~~~~~~LkpgG~l~i~~ 157 (194)
T d1dusa_ 121 NKIITNPPIRAG-KEVLHRIIEEGKELLKDNGEIWVVI 157 (194)
T ss_dssp EEEEECCCSTTC-HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred eEEEEcccEEec-chhhhhHHHHHHHhcCcCcEEEEEE
Confidence 999999887664 2446789999999999999998743
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=1e-18 Score=146.26 Aligned_cols=142 Identities=15% Similarity=0.065 Sum_probs=106.2
Q ss_pred hcCChHHHHHhhhhhcCCCCCC------CHHH-HHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEc
Q 048309 27 RKNSLAQAHRNISYHYDLDEDE------DLKV-AQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGIT 99 (288)
Q Consensus 27 ~~~~~~~~~~~~a~~Yd~~~~~------~l~~-a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD 99 (288)
..+.+.+.|+..+..||..+.. ..-+ -+...+..+.+.+. .+|.+|||||||+|..+..+++..+.+|+|||
T Consensus 5 ~~e~~~~~w~~~~~~yd~~~~~l~~~~~~~m~~w~~~~~~~la~~~~-~~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id 83 (229)
T d1zx0a1 5 PGENCSPAWGAAPAAYDAADTHLRILGKPVMERWETPYMHALAAAAS-SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIE 83 (229)
T ss_dssp TTCBCHHHHTTSCEEECTTSCEEEETTEEEEEGGGHHHHHHHHHHHT-TTCEEEEEECCTTSHHHHHHHTSCEEEEEEEE
T ss_pred ccccchhhhhhhhhcCCcHHHHHHHhchHHHHHHHHHHHHHHHHhhc-cCCCeEEEeeccchHHHHHHHHcCCCeEEEeC
Confidence 3444567788888888865221 0000 11223344445444 57889999999999999999987456899999
Q ss_pred CCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC---CCCCCCEEEE-----ccchhhhCHhhHHHHHHHHhcccccCcEE
Q 048309 100 LSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP---KAKKYDRIIS-----CEMMEAVGHEYMEEYFGCCESLLAKDGLL 171 (288)
Q Consensus 100 ~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~---~~~~fD~I~~-----~~~l~~~~~~~~~~~l~~~~~~LkpgG~l 171 (288)
+|+.+++.|+++.+..+ .++.++..|+.... +.++||.|+. ...++|+ .+...++++++++|||||+|
T Consensus 84 ~s~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~fD~i~fD~~~~~~~~~~~--~~~~~~~~~~~r~LkpGG~~ 159 (229)
T d1zx0a1 84 CNDGVFQRLRDWAPRQT--HKVIPLKGLWEDVAPTLPDGHFDGILYDTYPLSEETWHT--HQFNFIKNHAFRLLKPGGVL 159 (229)
T ss_dssp CCHHHHHHHHHHGGGCS--SEEEEEESCHHHHGGGSCTTCEEEEEECCCCCBGGGTTT--HHHHHHHHTHHHHEEEEEEE
T ss_pred CCHHHHHHHHHHhhhcc--cccccccccccccccccccccccceeecccccccccccc--cCHHHHHHHHHHHcCCCcEE
Confidence 99999999999987765 36888888876543 5678999884 5566777 78899999999999999999
Q ss_pred EE
Q 048309 172 VL 173 (288)
Q Consensus 172 ~~ 173 (288)
++
T Consensus 160 ~~ 161 (229)
T d1zx0a1 160 TY 161 (229)
T ss_dssp EE
T ss_pred EE
Confidence 86
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.71 E-value=1.8e-17 Score=140.13 Aligned_cols=111 Identities=17% Similarity=0.199 Sum_probs=91.6
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCC
Q 048309 56 RKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAK 135 (288)
Q Consensus 56 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~ 135 (288)
-.+..+.+. .+++.+|||+|||+|.+++.+++. +++|+|+|+|+.+++.|+++++.+++ +++++++|+.+..+.+
T Consensus 109 l~l~~l~~~--~~~g~~VLDiGcGsG~l~i~aa~~-g~~V~gvDis~~av~~A~~na~~n~~--~~~~~~~d~~~~~~~~ 183 (254)
T d2nxca1 109 LALKALARH--LRPGDKVLDLGTGSGVLAIAAEKL-GGKALGVDIDPMVLPQAEANAKRNGV--RPRFLEGSLEAALPFG 183 (254)
T ss_dssp HHHHHHHHH--CCTTCEEEEETCTTSHHHHHHHHT-TCEEEEEESCGGGHHHHHHHHHHTTC--CCEEEESCHHHHGGGC
T ss_pred HHHHHHHhh--cCccCEEEEcccchhHHHHHHHhc-CCEEEEEECChHHHHHHHHHHHHcCC--ceeEEecccccccccc
Confidence 334444443 357899999999999999988875 78999999999999999999999998 4688999987655568
Q ss_pred CCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEee
Q 048309 136 KYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 136 ~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
+||+|+++...+. ...+++++.++|||||+++++.+
T Consensus 184 ~fD~V~ani~~~~-----l~~l~~~~~~~LkpGG~lilSgi 219 (254)
T d2nxca1 184 PFDLLVANLYAEL-----HAALAPRYREALVPGGRALLTGI 219 (254)
T ss_dssp CEEEEEEECCHHH-----HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccchhhhcccccc-----HHHHHHHHHHhcCCCcEEEEEec
Confidence 9999999755544 46788899999999999999754
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.70 E-value=3.2e-17 Score=140.19 Aligned_cols=102 Identities=18% Similarity=0.271 Sum_probs=87.0
Q ss_pred HHHcCCCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CCCCCCE
Q 048309 62 IEKARVSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAKKYDR 139 (288)
Q Consensus 62 ~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~~fD~ 139 (288)
+......++.+|||||||+|.++..+++. ++.+++|+|+|+.|++.|+++. .+++++++|+.+++ ++++||+
T Consensus 77 l~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~------~~~~~~~~d~~~l~~~~~sfD~ 150 (268)
T d1p91a_ 77 LRERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY------PQVTFCVASSHRLPFSDTSMDA 150 (268)
T ss_dssp HHHHSCTTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC------TTSEEEECCTTSCSBCTTCEEE
T ss_pred HHHhcCCCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhccc------ccccceeeehhhccCCCCCEEE
Confidence 33333456779999999999999999987 6789999999999999998753 47899999999999 7899999
Q ss_pred EEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecC
Q 048309 140 IISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSST 178 (288)
Q Consensus 140 I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 178 (288)
|++..+.+|+ +++.++|||||.+++.+++.
T Consensus 151 v~~~~~~~~~---------~e~~rvLkpgG~l~~~~p~~ 180 (268)
T d1p91a_ 151 IIRIYAPCKA---------EELARVVKPGGWVITATPGP 180 (268)
T ss_dssp EEEESCCCCH---------HHHHHHEEEEEEEEEEEECT
T ss_pred EeecCCHHHH---------HHHHHHhCCCcEEEEEeeCC
Confidence 9999887775 45789999999999987654
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.69 E-value=3.7e-17 Score=141.43 Aligned_cols=114 Identities=20% Similarity=0.298 Sum_probs=89.8
Q ss_pred HHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCC---ceEEEEcccCC----CCCC
Q 048309 62 IEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQD---HIRLYLCDYRQ----LPKA 134 (288)
Q Consensus 62 ~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~---~v~~~~~d~~~----~~~~ 134 (288)
++.+...++.+|||+|||+|..+..|++. +.+|+|+|+|+.|++.|+++....+... ...+...++.. .+..
T Consensus 49 ~~~l~~~~~~~vLD~GcG~G~~~~~la~~-g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (292)
T d1xvaa_ 49 LGLLRQHGCHRVLDVACGTGVDSIMLVEE-GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAG 127 (292)
T ss_dssp HHHHHHTTCCEEEESSCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCT
T ss_pred HHHhhhcCCCEEEEecCCCcHHHHHHHHc-CCeeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccCCC
Confidence 33344456789999999999999999996 7899999999999999999987765421 23455555543 3355
Q ss_pred CCCCEEEEcc-chhhhCH-----hhHHHHHHHHhcccccCcEEEEEee
Q 048309 135 KKYDRIISCE-MMEAVGH-----EYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 135 ~~fD~I~~~~-~l~~~~~-----~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
++||+|+|.+ +++|++. ++...+++++.++|||||+|++...
T Consensus 128 ~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 175 (292)
T d1xvaa_ 128 DGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR 175 (292)
T ss_dssp TCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEeec
Confidence 7899999864 7899842 4678899999999999999999754
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.68 E-value=1.8e-16 Score=132.09 Aligned_cols=110 Identities=15% Similarity=0.090 Sum_probs=94.8
Q ss_pred HHcCCCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC--CCCCCCE
Q 048309 63 EKARVSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP--KAKKYDR 139 (288)
Q Consensus 63 ~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~--~~~~fD~ 139 (288)
+.+.++||.+|||+|||+|..+..++.. ++..|+|+|+|+.|++.++++++.. +++..+.+|..... .+..+|+
T Consensus 68 ~~l~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~---~ni~~i~~d~~~~~~~~~~~~~v 144 (230)
T d1g8sa_ 68 KVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER---ENIIPILGDANKPQEYANIVEKV 144 (230)
T ss_dssp CCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC---TTEEEEECCTTCGGGGTTTCCCE
T ss_pred HhCCCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhh---cccceEEEeeccCccccccccee
Confidence 4567899999999999999999999987 6679999999999999999887655 47888999988765 5577888
Q ss_pred EEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 140 IISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 140 I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
+++...++|. .+...++.++.+.|||||.+++....
T Consensus 145 ~~i~~~~~~~--~~~~~~l~~~~r~LKpgG~~~i~~k~ 180 (230)
T d1g8sa_ 145 DVIYEDVAQP--NQAEILIKNAKWFLKKGGYGMIAIKA 180 (230)
T ss_dssp EEEEECCCST--THHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred EEeeccccch--HHHHHHHHHHHHhcccCceEEEEeec
Confidence 8888778877 78899999999999999999987643
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.68 E-value=4.9e-17 Score=136.88 Aligned_cols=109 Identities=16% Similarity=0.181 Sum_probs=91.7
Q ss_pred HHHHHHcCCCCCCEEEEECCcccHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCC
Q 048309 59 SLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKK 136 (288)
Q Consensus 59 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~ 136 (288)
..++..++++||.+|||+|||+|.++..+++. +..+|+++|.++++++.|++++++.+...++++..+|+.+..++++
T Consensus 75 ~~Ii~~l~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~~~~~ 154 (250)
T d1yb2a1 75 SYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQM 154 (250)
T ss_dssp ------CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSCC
T ss_pred HHHHHHcCCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecccccce
Confidence 56788899999999999999999999999986 5679999999999999999999987666799999999998766789
Q ss_pred CCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 137 YDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 137 fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
||+|++. + .++..+++++.++|||||++++.
T Consensus 155 fD~V~ld-----~--p~p~~~l~~~~~~LKpGG~lv~~ 185 (250)
T d1yb2a1 155 YDAVIAD-----I--PDPWNHVQKIASMMKPGSVATFY 185 (250)
T ss_dssp EEEEEEC-----C--SCGGGSHHHHHHTEEEEEEEEEE
T ss_pred eeeeeec-----C--CchHHHHHHHHHhcCCCceEEEE
Confidence 9999873 3 44567899999999999999873
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.68 E-value=7.9e-17 Score=136.49 Aligned_cols=111 Identities=19% Similarity=0.267 Sum_probs=97.5
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHc--CCCCceEEEEcccCCCC
Q 048309 57 KHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQMKYAEMKVNEA--GLQDHIRLYLCDYRQLP 132 (288)
Q Consensus 57 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~giD~s~~~~~~a~~~~~~~--g~~~~v~~~~~d~~~~~ 132 (288)
-...++..++++||.+|||+|||+|.++..||+. +..+|+++|+++++++.|+++++.. +...+++++++|+.+.+
T Consensus 84 D~s~Ii~~l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~ 163 (264)
T d1i9ga_ 84 DAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSE 163 (264)
T ss_dssp HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCC
T ss_pred HHHHHHHHhCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEeccccccc
Confidence 4567889999999999999999999999999987 5679999999999999999998764 44578999999999877
Q ss_pred -CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 133 -KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 133 -~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
++++||+|++ ++ .++..++.++.++|||||++++.
T Consensus 164 ~~~~~fDaV~l-----dl--p~P~~~l~~~~~~LkpGG~lv~~ 199 (264)
T d1i9ga_ 164 LPDGSVDRAVL-----DM--LAPWEVLDAVSRLLVAGGVLMVY 199 (264)
T ss_dssp CCTTCEEEEEE-----ES--SCGGGGHHHHHHHEEEEEEEEEE
T ss_pred ccCCCcceEEE-----ec--CCHHHHHHHHHhccCCCCEEEEE
Confidence 7789999986 45 56678899999999999999874
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=5.9e-17 Score=137.05 Aligned_cols=140 Identities=15% Similarity=0.131 Sum_probs=96.1
Q ss_pred hhcCCCCCCCHHHHHHHHH-HHHHHHc--CCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcC
Q 048309 40 YHYDLDEDEDLKVAQMRKH-SLLIEKA--RVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAG 116 (288)
Q Consensus 40 ~~Yd~~~~~~l~~a~~~~~-~~l~~~~--~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g 116 (288)
.+|...............+ ..+.+.+ ...++.+|||||||+|..+..++.....+|+|+|+|+.+++.|+++++..+
T Consensus 19 ~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~~~~~ 98 (257)
T d2a14a1 19 TYYSFDGSPSPEAEMLKFNLECLHKTFGPGGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEP 98 (257)
T ss_dssp HHCCCCCSCCHHHHHHHHHHHHHHHHHSTTSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCT
T ss_pred HHhCcCccccHHHHHHHHHHHHHHHHhcccCCCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHHhhcc
Confidence 4566543333333333332 2333333 335678999999999998887776534479999999999999999987654
Q ss_pred CCCc----------------------------e-EEEEccc----CCCC-CCCCCCEEEEccchhhhC--HhhHHHHHHH
Q 048309 117 LQDH----------------------------I-RLYLCDY----RQLP-KAKKYDRIISCEMMEAVG--HEYMEEYFGC 160 (288)
Q Consensus 117 ~~~~----------------------------v-~~~~~d~----~~~~-~~~~fD~I~~~~~l~~~~--~~~~~~~l~~ 160 (288)
..-. + .....+. ...+ ..++||+|++.++++|++ .+++..++++
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~ 178 (257)
T d2a14a1 99 GAYDWTPAVKFACELEGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCN 178 (257)
T ss_dssp TCCCCHHHHHHHHHHTTCGGGHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHH
T ss_pred ccchhhhHHHHHHHhccccchHHHHHHHHhhhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHH
Confidence 3100 0 1111111 1122 568899999999999994 3578899999
Q ss_pred HhcccccCcEEEEEeecCC
Q 048309 161 CESLLAKDGLLVLQFSSTP 179 (288)
Q Consensus 161 ~~~~LkpgG~l~~~~~~~~ 179 (288)
+.++|||||.+++.++...
T Consensus 179 i~~~LkpGG~li~~~~~~~ 197 (257)
T d2a14a1 179 LASLLKPGGHLVTTVTLRL 197 (257)
T ss_dssp HHTTEEEEEEEEEEEESSC
T ss_pred HHhccCCCcEEEEEEeccc
Confidence 9999999999999877543
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.67 E-value=1.9e-16 Score=130.19 Aligned_cols=108 Identities=16% Similarity=0.131 Sum_probs=88.5
Q ss_pred HcCCCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CCCCCCEEE
Q 048309 64 KARVSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAKKYDRII 141 (288)
Q Consensus 64 ~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~~fD~I~ 141 (288)
.+.++||.+|||+|||+|..+..+++. +..+|+|+|+|+.|++.++++++.. +++.++.+|....+ ....+|.+.
T Consensus 51 ~l~lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~---~ni~~i~~d~~~~~~~~~~~~~vd 127 (209)
T d1nt2a_ 51 RLKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER---NNIIPLLFDASKPWKYSGIVEKVD 127 (209)
T ss_dssp CCCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC---SSEEEECSCTTCGGGTTTTCCCEE
T ss_pred cCCCCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhcc---CCceEEEeeccCccccccccceEE
Confidence 467899999999999999999999987 5579999999999999999998876 47999999998865 334444332
Q ss_pred -EccchhhhCHhhHHHHHHHHhcccccCcEEEEEee
Q 048309 142 -SCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 142 -~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
+...+.|. .+...+++++.+.|||||.+++...
T Consensus 128 ~v~~~~~~~--~~~~~~l~~~~~~LkpgG~l~i~~~ 161 (209)
T d1nt2a_ 128 LIYQDIAQK--NQIEILKANAEFFLKEKGEVVIMVK 161 (209)
T ss_dssp EEEECCCST--THHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEEecccCh--hhHHHHHHHHHHHhccCCeEEEEEE
Confidence 22345555 6778899999999999999998654
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.66 E-value=2e-16 Score=129.46 Aligned_cols=106 Identities=20% Similarity=0.263 Sum_probs=91.9
Q ss_pred CCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC---CCCCCCEEEEcc
Q 048309 69 KEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP---KAKKYDRIISCE 144 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~---~~~~fD~I~~~~ 144 (288)
+...|||||||+|..+..+|+. +...++|+|+++.++..|.++++..++ +|+.++.+|+..+. +++++|.|++.+
T Consensus 29 ~~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l-~Nv~~~~~Da~~l~~~~~~~~~d~v~i~f 107 (204)
T d2fcaa1 29 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEA-QNVKLLNIDADTLTDVFEPGEVKRVYLNF 107 (204)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCC-SSEEEECCCGGGHHHHCCTTSCCEEEEES
T ss_pred CCceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhc-cCchhcccchhhhhcccCchhhhcccccc
Confidence 3458999999999999999998 889999999999999999999999999 59999999998764 678999999988
Q ss_pred chhhhCHhh------HHHHHHHHhcccccCcEEEEEe
Q 048309 145 MMEAVGHEY------MEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 145 ~l~~~~~~~------~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
...+..... ...+++.+.++|||||.|++.+
T Consensus 108 p~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~T 144 (204)
T d2fcaa1 108 SDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT 144 (204)
T ss_dssp CCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred ccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 876652221 1589999999999999998854
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=6.9e-17 Score=141.87 Aligned_cols=131 Identities=15% Similarity=0.172 Sum_probs=103.7
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccC-CEEEEEcCCHHHHHHHHHHHHHc-----
Q 048309 42 YDLDEDEDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTG-CNYTGITLSAEQMKYAEMKVNEA----- 115 (288)
Q Consensus 42 Yd~~~~~~l~~a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~giD~s~~~~~~a~~~~~~~----- 115 (288)
|.........+++...+..+++.++++++.+|||||||+|..+..+|+..+ .+++|||+|+.+++.|++..+..
T Consensus 124 y~~~~~~~~~e~~~~~~~~~~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~ 203 (328)
T d1nw3a_ 124 YEPFSPEVYGETSFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMK 203 (328)
T ss_dssp SCSSSTTCCCCCCHHHHHHHHHHSCCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCchhhhHHHHHHHHHHHcCCCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhh
Confidence 333334455566777889999999999999999999999999999988744 47999999999999998876542
Q ss_pred --CC-CCceEEEEcccCCCC-CCC--CCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 116 --GL-QDHIRLYLCDYRQLP-KAK--KYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 116 --g~-~~~v~~~~~d~~~~~-~~~--~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
|+ ..+++++++|+.+.+ .+. .+|+|++. .+.|. +++...+.++.+.|||||++++..
T Consensus 204 ~~g~~~~~i~~~~gd~~~~~~~~~~~~advi~~~-~~~f~--~~~~~~l~e~~r~LKpGg~iv~~~ 266 (328)
T d1nw3a_ 204 WYGKKHAEYTLERGDFLSEEWRERIANTSVIFVN-NFAFG--PEVDHQLKERFANMKEGGRIVSSK 266 (328)
T ss_dssp HHTCCCCCEEEEECCTTSHHHHHHHHHCSEEEEC-CTTTC--HHHHHHHHHHHTTCCTTCEEEESS
T ss_pred hccccCCceEEEECcccccccccccCcceEEEEc-ceecc--hHHHHHHHHHHHhCCCCcEEEEec
Confidence 22 257999999999876 322 35777764 45565 788899999999999999998754
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.65 E-value=3e-16 Score=129.16 Aligned_cols=147 Identities=18% Similarity=0.207 Sum_probs=118.9
Q ss_pred hHHHHHhhhhhcCChHHHHHhhhhhcCCC----CCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccC
Q 048309 17 QKSYFLRHISRKNSLAQAHRNISYHYDLD----EDEDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTG 92 (288)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~a~~Yd~~----~~~~l~~a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~ 92 (288)
++...++..+|+.++...+...| +-|.. ....+. +-.....+++.++++++.+|||||||+|+.+..+++..+
T Consensus 25 ~v~~A~~~VpRe~Fvp~~~~~~A-Y~D~~l~i~~g~~is--~P~~~a~ml~~L~l~~g~~VLeIGsGsGY~taila~l~g 101 (215)
T d1jg1a_ 25 EVERAFLKYPRYLSVEDKYKKYA-HIDEPLPIPAGQTVS--APHMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVK 101 (215)
T ss_dssp HHHHHHHHSCGGGGSCGGGGGGT-TSSSCEECSTTCEEC--CHHHHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHC
T ss_pred HHHHHHHcCCchhcCCHHHhhcc-cccCCcccchhhhhh--hhhhHHHHHHhhccCccceEEEecCCCChhHHHHHHhhC
Confidence 56677788899999988888776 23322 222222 123556788999999999999999999999999987656
Q ss_pred CEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEE
Q 048309 93 CNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLL 171 (288)
Q Consensus 93 ~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l 171 (288)
.+|+++|.++++++.|+++++..++ .|+.++++|..... ..+.||+|++..++.+++. . +.+.|+|||++
T Consensus 102 ~~V~~ie~~~~l~~~a~~~l~~~g~-~nv~~~~gd~~~g~~~~~pfD~Iiv~~a~~~ip~----~----l~~qL~~gGrL 172 (215)
T d1jg1a_ 102 TDVYTIERIPELVEFAKRNLERAGV-KNVHVILGDGSKGFPPKAPYDVIIVTAGAPKIPE----P----LIEQLKIGGKL 172 (215)
T ss_dssp SCEEEEESCHHHHHHHHHHHHHTTC-CSEEEEESCGGGCCGGGCCEEEEEECSBBSSCCH----H----HHHTEEEEEEE
T ss_pred ceeEEEeccHHHHHHHHHHHHHcCC-ceeEEEECccccCCcccCcceeEEeecccccCCH----H----HHHhcCCCCEE
Confidence 7899999999999999999999998 59999999998854 6789999999999998853 2 44679999999
Q ss_pred EEEe
Q 048309 172 VLQF 175 (288)
Q Consensus 172 ~~~~ 175 (288)
++..
T Consensus 173 v~pv 176 (215)
T d1jg1a_ 173 IIPV 176 (215)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9854
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.65 E-value=1.2e-16 Score=132.39 Aligned_cols=146 Identities=16% Similarity=0.255 Sum_probs=113.3
Q ss_pred hhHHHHHhhhhhcCChHHHHHhhhhhcCCC-----CCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc
Q 048309 16 NQKSYFLRHISRKNSLAQAHRNISYHYDLD-----EDEDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ 90 (288)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~a~~Yd~~-----~~~~l~~a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~ 90 (288)
.+....++..+|+.+++..+...+..+... ....+ .+-.....+++.+.++++.+|||||||+|+.+..+++.
T Consensus 14 ~~v~~A~~~VpRe~Fvp~~~~~~AY~d~~~~l~i~~g~~~--~~p~~~a~ml~~L~l~~g~~VLdIG~GsGy~ta~La~l 91 (224)
T d1vbfa_ 14 QELAEAFNKVDRSLFLPENLKDYAYAHTHEALPILPGINT--TALNLGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEI 91 (224)
T ss_dssp HHHHHHHHHSCHHHHSCGGGGGGSSSSTTCCEEEETTEEE--CCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH
T ss_pred HHHHHHHHcCcHHHcCChhhhhcCccCcccCcccCCCCce--ehhhhHHHHHHHhhhcccceEEEecCCCCHHHHHHHHH
Confidence 366777788889888888888776433211 11111 12234456889999999999999999999999999886
Q ss_pred cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCc
Q 048309 91 TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDG 169 (288)
Q Consensus 91 ~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG 169 (288)
..+|+++|.++++++.|+++.... .|+.++.+|..... ..++||+|++..++++++. .+.+.|+|||
T Consensus 92 -~~~V~aiE~~~~~~~~A~~~~~~~---~nv~~~~~d~~~g~~~~~pfD~Iiv~~a~~~ip~--------~l~~qLk~GG 159 (224)
T d1vbfa_ 92 -VDKVVSVEINEKMYNYASKLLSYY---NNIKLILGDGTLGYEEEKPYDRVVVWATAPTLLC--------KPYEQLKEGG 159 (224)
T ss_dssp -SSEEEEEESCHHHHHHHHHHHTTC---SSEEEEESCGGGCCGGGCCEEEEEESSBBSSCCH--------HHHHTEEEEE
T ss_pred -hcccccccccHHHHHHHHHHHhcc---cccccccCchhhcchhhhhHHHHHhhcchhhhhH--------HHHHhcCCCC
Confidence 679999999999999999887643 58999999987644 5678999999999888852 2457899999
Q ss_pred EEEEEe
Q 048309 170 LLVLQF 175 (288)
Q Consensus 170 ~l~~~~ 175 (288)
++++-.
T Consensus 160 rLV~pv 165 (224)
T d1vbfa_ 160 IMILPI 165 (224)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999853
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.64 E-value=3.1e-16 Score=133.44 Aligned_cols=111 Identities=18% Similarity=0.226 Sum_probs=97.4
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCC
Q 048309 57 KHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKA 134 (288)
Q Consensus 57 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~ 134 (288)
-...++..+++.+|.+|||+|||+|.++..+|+. ++++|+++|+++++++.|+++++..++..++.+...|+......
T Consensus 91 d~~~Ii~~l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~~~~~ 170 (266)
T d1o54a_ 91 DSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDE 170 (266)
T ss_dssp HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSC
T ss_pred HHHHHHHhhCCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEeccccccccc
Confidence 3457889999999999999999999999999986 56799999999999999999999999888999999998665455
Q ss_pred CCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 135 KKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 135 ~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
..+|.|+. ++ .++..+++++.++|||||++++.
T Consensus 171 ~~~D~V~~-----d~--p~p~~~l~~~~~~LKpGG~lv~~ 203 (266)
T d1o54a_ 171 KDVDALFL-----DV--PDPWNYIDKCWEALKGGGRFATV 203 (266)
T ss_dssp CSEEEEEE-----CC--SCGGGTHHHHHHHEEEEEEEEEE
T ss_pred cceeeeEe-----cC--CCHHHHHHHHHhhcCCCCEEEEE
Confidence 77998875 45 56678999999999999999974
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=1.1e-15 Score=131.04 Aligned_cols=120 Identities=18% Similarity=0.219 Sum_probs=89.9
Q ss_pred HHHHHHcC-CCCCCEEEEECCcccHHHHHHHHc-----c--CCEEEEEcCCHHHHHHHHHHHHHcCCCCceE--EEEccc
Q 048309 59 SLLIEKAR-VSKEHEVLEIGCGWGTFAIEVVRQ-----T--GCNYTGITLSAEQMKYAEMKVNEAGLQDHIR--LYLCDY 128 (288)
Q Consensus 59 ~~l~~~~~-~~~~~~vLDiGcG~G~~~~~la~~-----~--~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~--~~~~d~ 128 (288)
..++..+. .++..+|||||||+|.++..+++. + ..+++|||+|+.|++.++++++......++. +...++
T Consensus 29 ~~~l~~l~~~~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~ 108 (280)
T d1jqea_ 29 PGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETS 108 (280)
T ss_dssp HHHTTTTTTTCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCH
T ss_pred HHHHHHhccCCCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhh
Confidence 33444443 334458999999999998877653 1 2468999999999999999986543323444 444444
Q ss_pred CCC------C-CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCCC
Q 048309 129 RQL------P-KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPD 180 (288)
Q Consensus 129 ~~~------~-~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 180 (288)
+++ + .+++||+|+|..+++|+ +++..+++++.++|+|||.+++.......
T Consensus 109 ~~~~~~~~~~~~~~~fD~I~~~~~l~~~--~d~~~~l~~l~~~LkpgG~l~i~~~~~~~ 165 (280)
T d1jqea_ 109 SEYQSRMLEKKELQKWDFIHMIQMLYYV--KDIPATLKFFHSLLGTNAKMLIIVVSGSS 165 (280)
T ss_dssp HHHHHHHTTSSSCCCEEEEEEESCGGGC--SCHHHHHHHHHHTEEEEEEEEEEEECTTS
T ss_pred hhhcchhcccCCCCceeEEEEccceecC--CCHHHHHHHHHhhCCCCCEEEEEEecCcc
Confidence 321 2 56899999999999999 78899999999999999999997765443
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=4.6e-16 Score=129.21 Aligned_cols=144 Identities=17% Similarity=0.156 Sum_probs=109.0
Q ss_pred hHHHHHhhhhhcCChHHHHHhhhhhcCCC-----CCCCHHHHHHHHHHHHHHHc--CCCCCCEEEEECCcccHHHHHHHH
Q 048309 17 QKSYFLRHISRKNSLAQAHRNISYHYDLD-----EDEDLKVAQMRKHSLLIEKA--RVSKEHEVLEIGCGWGTFAIEVVR 89 (288)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~a~~Yd~~-----~~~~l~~a~~~~~~~l~~~~--~~~~~~~vLDiGcG~G~~~~~la~ 89 (288)
++...++..+|+.+++.. .|... ....+. +-.....+++.+ .+++|.+|||||||+|..+..+++
T Consensus 25 ~v~~a~~~vpRe~Fvp~~------aY~D~~l~i~~~~~is--~P~~~a~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~ 96 (224)
T d1i1na_ 25 KVFEVMLATDRSHYAKCN------PYMDSPQSIGFQATIS--APHMHAYALELLFDQLHEGAKALDVGSGSGILTACFAR 96 (224)
T ss_dssp HHHHHHHTSCGGGTCSSC------TTSSSCEEEETTEEEC--CHHHHHHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHH
T ss_pred HHHHHHHhCCHHHcCCcc------cCCCCCccccchhhhh--hhHHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHH
Confidence 566777777887777521 24322 111111 113456777777 678999999999999999999887
Q ss_pred c--cCCEEEEEcCCHHHHHHHHHHHHHcCCC----CceEEEEcccCCCC-CCCCCCEEEEccchhhhCHhhHHHHHHHHh
Q 048309 90 Q--TGCNYTGITLSAEQMKYAEMKVNEAGLQ----DHIRLYLCDYRQLP-KAKKYDRIISCEMMEAVGHEYMEEYFGCCE 162 (288)
Q Consensus 90 ~--~~~~v~giD~s~~~~~~a~~~~~~~g~~----~~v~~~~~d~~~~~-~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~ 162 (288)
. +..+|+++|.++++++.|+++++..++. .++.++.+|..... ..++||+|++..++++++. .+.
T Consensus 97 l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~~~~~~fD~I~~~~~~~~ip~--------~l~ 168 (224)
T d1i1na_ 97 MVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQ--------ALI 168 (224)
T ss_dssp HHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEEEEECSBBSSCCH--------HHH
T ss_pred HhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccccchhhhhhhhhhhcchhhcCH--------HHH
Confidence 6 4669999999999999999999876542 47899999998766 6689999999999998852 356
Q ss_pred cccccCcEEEEEee
Q 048309 163 SLLAKDGLLVLQFS 176 (288)
Q Consensus 163 ~~LkpgG~l~~~~~ 176 (288)
+.|||||++++...
T Consensus 169 ~~LkpGG~LV~pv~ 182 (224)
T d1i1na_ 169 DQLKPGGRLILPVG 182 (224)
T ss_dssp HTEEEEEEEEEEES
T ss_pred hhcCCCcEEEEEEc
Confidence 88999999998543
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.62 E-value=2.9e-16 Score=137.97 Aligned_cols=106 Identities=24% Similarity=0.328 Sum_probs=91.2
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CCCCCCEEEEcc
Q 048309 66 RVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAKKYDRIISCE 144 (288)
Q Consensus 66 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~~fD~I~~~~ 144 (288)
...++++|||||||+|.++..+++....+|+++|.|+ +++.|++..+.+++..+++++.+|+.+++ ++++||+|++..
T Consensus 35 ~~~~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se~ 113 (328)
T d1g6q1_ 35 DLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEW 113 (328)
T ss_dssp HHHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECC
T ss_pred ccCCcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhhccCcccceeEEEEEe
Confidence 3347889999999999999998887446899999986 77899999999999889999999999998 778999999977
Q ss_pred chhhhC-HhhHHHHHHHHhcccccCcEEE
Q 048309 145 MMEAVG-HEYMEEYFGCCESLLAKDGLLV 172 (288)
Q Consensus 145 ~l~~~~-~~~~~~~l~~~~~~LkpgG~l~ 172 (288)
..+++. ......++..+.++|||||.++
T Consensus 114 ~~~~~~~e~~~~~~~~a~~r~LkpgG~ii 142 (328)
T d1g6q1_ 114 MGYFLLYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp CBTTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred cceeeccchhHHHHHHHHHhccCCCeEEE
Confidence 766652 2567888999999999999886
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.62 E-value=3e-15 Score=122.35 Aligned_cols=106 Identities=23% Similarity=0.345 Sum_probs=90.6
Q ss_pred CCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC---CCCCCCEEEEcc
Q 048309 69 KEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP---KAKKYDRIISCE 144 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~---~~~~fD~I~~~~ 144 (288)
....|||||||+|..+..+|+. +...++|+|+++.++..|.+++...++ +|+.++.+|+.++. ++.++|.|++.+
T Consensus 31 ~~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l-~Ni~~~~~da~~l~~~~~~~~~~~i~i~f 109 (204)
T d1yzha1 31 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGV-PNIKLLWVDGSDLTDYFEDGEIDRLYLNF 109 (204)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC-SSEEEEECCSSCGGGTSCTTCCSEEEEES
T ss_pred CCCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhcc-ccceeeecCHHHHhhhccCCceehhcccc
Confidence 3458999999999999999998 889999999999999999999999999 59999999998865 678999999887
Q ss_pred chhhhCHhh------HHHHHHHHhcccccCcEEEEEe
Q 048309 145 MMEAVGHEY------MEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 145 ~l~~~~~~~------~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
...+..... ...+++.+.++|||||.+++.+
T Consensus 110 PdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~T 146 (204)
T d1yzha1 110 SDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT 146 (204)
T ss_dssp CCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred cccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 655431111 2689999999999999998854
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.59 E-value=6.3e-16 Score=135.06 Aligned_cols=105 Identities=23% Similarity=0.265 Sum_probs=89.6
Q ss_pred CCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CCCCCCEEEEccch
Q 048309 68 SKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAKKYDRIISCEMM 146 (288)
Q Consensus 68 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~~fD~I~~~~~l 146 (288)
.++++|||||||+|.++..+++....+|+|+|.|+. ...+++.++.+++.++++++++|+.+++ +.++||+|++....
T Consensus 32 ~~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~-~~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~~~ 110 (316)
T d1oria_ 32 FKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSI-SDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMG 110 (316)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTT-HHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCB
T ss_pred CCcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHH-HhhhhhHHHHhCCccccceEeccHHHcccccceeEEEeeeeee
Confidence 468899999999999999998864468999999975 5777888888899889999999999998 67899999997766
Q ss_pred hhhC-HhhHHHHHHHHhcccccCcEEEE
Q 048309 147 EAVG-HEYMEEYFGCCESLLAKDGLLVL 173 (288)
Q Consensus 147 ~~~~-~~~~~~~l~~~~~~LkpgG~l~~ 173 (288)
+++. ...+..++..+.++|||||.++-
T Consensus 111 ~~l~~e~~~~~~l~~~~r~Lkp~G~iiP 138 (316)
T d1oria_ 111 YCLFYESMLNTVLHARDKWLAPDGLIFP 138 (316)
T ss_dssp BTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred eeeccHHHHHHHHHHHHhcCCCCeEEEe
Confidence 6552 24678999999999999999874
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=3.2e-15 Score=130.19 Aligned_cols=112 Identities=21% Similarity=0.241 Sum_probs=91.0
Q ss_pred HHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CCCCCCE
Q 048309 61 LIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAKKYDR 139 (288)
Q Consensus 61 l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~~fD~ 139 (288)
+.+.....++++|||||||+|.++..+|+....+|+++|.|+.+. .+++....++...+++++.+|+.+++ +..+||+
T Consensus 27 i~~~~~~~~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~-~a~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~D~ 105 (311)
T d2fyta1 27 IYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILY-QAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDV 105 (311)
T ss_dssp HHHCGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHH-HHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEE
T ss_pred HHhccccCCcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHH-HHHHHHHHhCCCccceEEEeeHHHhcCccccceE
Confidence 444445567899999999999999999987446899999999875 46666777787789999999999998 6789999
Q ss_pred EEEccchhhhC-HhhHHHHHHHHhcccccCcEEEE
Q 048309 140 IISCEMMEAVG-HEYMEEYFGCCESLLAKDGLLVL 173 (288)
Q Consensus 140 I~~~~~l~~~~-~~~~~~~l~~~~~~LkpgG~l~~ 173 (288)
|++....++.. ...+..++....++|+|||+++-
T Consensus 106 Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~iip 140 (311)
T d2fyta1 106 IISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYP 140 (311)
T ss_dssp EEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred EEEeeeeeecccccccHHHHHHHHhcCCCCcEEec
Confidence 99977666653 23567778888899999999874
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=3.7e-15 Score=129.87 Aligned_cols=112 Identities=12% Similarity=0.161 Sum_probs=92.0
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHc----------CCCCceEEE
Q 048309 57 KHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQMKYAEMKVNEA----------GLQDHIRLY 124 (288)
Q Consensus 57 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~giD~s~~~~~~a~~~~~~~----------g~~~~v~~~ 124 (288)
-...++..+++.||.+|||+|||+|.++..||+. +..+|+++|+++++++.|+++++.. +..+++++.
T Consensus 86 D~~~Il~~l~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~ 165 (324)
T d2b25a1 86 DINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFI 165 (324)
T ss_dssp HHHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEE
T ss_pred cHHHHHHHhCCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEE
Confidence 3467888899999999999999999999999986 5679999999999999999998853 345789999
Q ss_pred EcccCCCC---CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 125 LCDYRQLP---KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 125 ~~d~~~~~---~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
.+|+.+.. ....||+|+.. + .++..++.++.++|||||++++..
T Consensus 166 ~~di~~~~~~~~~~~fD~V~LD-----~--p~P~~~l~~~~~~LKpGG~lv~~~ 212 (324)
T d2b25a1 166 HKDISGATEDIKSLTFDAVALD-----M--LNPHVTLPVFYPHLKHGGVCAVYV 212 (324)
T ss_dssp ESCTTCCC-------EEEEEEC-----S--SSTTTTHHHHGGGEEEEEEEEEEE
T ss_pred ecchhhcccccCCCCcceEeec-----C--cCHHHHHHHHHHhccCCCEEEEEe
Confidence 99998764 45789999863 3 344568899999999999999844
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=2.6e-14 Score=121.45 Aligned_cols=113 Identities=16% Similarity=0.069 Sum_probs=85.6
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCC--------------------------
Q 048309 66 RVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQD-------------------------- 119 (288)
Q Consensus 66 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~-------------------------- 119 (288)
+...|.+|||||||+|..+...+.....+|+|+|+|+.|++.+++++...+..-
T Consensus 51 g~~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (263)
T d2g72a1 51 GEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQL 130 (263)
T ss_dssp SCSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHH
T ss_pred CCCCCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHh
Confidence 445688999999999987765555445689999999999999998875432110
Q ss_pred ---ceEEEEcccCCCC-------CCCCCCEEEEccchhhhC--HhhHHHHHHHHhcccccCcEEEEEeecC
Q 048309 120 ---HIRLYLCDYRQLP-------KAKKYDRIISCEMMEAVG--HEYMEEYFGCCESLLAKDGLLVLQFSST 178 (288)
Q Consensus 120 ---~v~~~~~d~~~~~-------~~~~fD~I~~~~~l~~~~--~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 178 (288)
...+...|+..-. ..++||+|++.++++|++ .+++..+++++.++|||||.+++.+...
T Consensus 131 ~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~ 201 (263)
T d2g72a1 131 RARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALE 201 (263)
T ss_dssp HHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEES
T ss_pred hhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccC
Confidence 1234455654321 346899999999999995 3478999999999999999999977643
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.53 E-value=1.5e-14 Score=129.24 Aligned_cols=119 Identities=9% Similarity=0.093 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccC-CEEEEEcCCHHHHHHHHHHHHHcC-------C-CCceEE-
Q 048309 54 QMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTG-CNYTGITLSAEQMKYAEMKVNEAG-------L-QDHIRL- 123 (288)
Q Consensus 54 ~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~giD~s~~~~~~a~~~~~~~g-------~-~~~v~~- 123 (288)
....+..+++.++++++.+|||||||+|..+..+|...+ .+++|||+|+.+++.|+++.+..+ . ...+.+
T Consensus 201 ~~~~i~~Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~ 280 (406)
T d1u2za_ 201 LPNFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFS 280 (406)
T ss_dssp CHHHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEE
T ss_pred CHHHHHHHHHHhCCCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceee
Confidence 345788899999999999999999999999999998844 489999999999999999887532 1 122333
Q ss_pred EEcccCCCC----CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 124 YLCDYRQLP----KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 124 ~~~d~~~~~----~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
..+++.+.+ .-..+|+|++.. +.|. +++...+.++.+.|||||+++...
T Consensus 281 ~~~~f~~~~~~d~~~~~adVV~inn-~~f~--~~l~~~L~ei~r~LKPGGrIVs~~ 333 (406)
T d1u2za_ 281 LKKSFVDNNRVAELIPQCDVILVNN-FLFD--EDLNKKVEKILQTAKVGCKIISLK 333 (406)
T ss_dssp ESSCSTTCHHHHHHGGGCSEEEECC-TTCC--HHHHHHHHHHHTTCCTTCEEEESS
T ss_pred eeechhhccccccccccceEEEEec-ccCc--hHHHHHHHHHHHhcCCCcEEEEec
Confidence 345554433 224678888764 4455 788999999999999999998754
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.51 E-value=2.5e-14 Score=118.60 Aligned_cols=108 Identities=20% Similarity=0.150 Sum_probs=89.0
Q ss_pred HHcCCCCCCEEEEECCcccHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC----CCCC
Q 048309 63 EKARVSKEHEVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP----KAKK 136 (288)
Q Consensus 63 ~~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~----~~~~ 136 (288)
+.+.++||.+|||+|||+|..+..+++. +..+|+|+|+++.+++.++++++.. .++..+..|..... ....
T Consensus 67 ~~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~---~~~~~i~~d~~~~~~~~~~~~~ 143 (227)
T d1g8aa_ 67 KNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER---RNIVPILGDATKPEEYRALVPK 143 (227)
T ss_dssp CCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC---TTEEEEECCTTCGGGGTTTCCC
T ss_pred cccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhc---CCceEEEEECCCcccccccccc
Confidence 4567899999999999999999999987 4679999999999999999988665 46888888886543 3467
Q ss_pred CCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 137 YDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 137 fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
+|+|++. +.|. .+...+++++.+.|||||.+++....
T Consensus 144 vD~i~~d--~~~~--~~~~~~l~~~~~~LkpgG~lvi~~ka 180 (227)
T d1g8aa_ 144 VDVIFED--VAQP--TQAKILIDNAEVYLKRGGYGMIAVKS 180 (227)
T ss_dssp EEEEEEC--CCST--THHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred eEEEEEE--cccc--chHHHHHHHHHHhcccCCeEEEEEEC
Confidence 8888764 3444 67788999999999999999986543
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.51 E-value=3.5e-14 Score=120.17 Aligned_cols=110 Identities=15% Similarity=0.230 Sum_probs=92.3
Q ss_pred HHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCE
Q 048309 60 LLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDR 139 (288)
Q Consensus 60 ~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~ 139 (288)
.+.+.. ++|.+|||+|||+|.++..+|+...++|+++|+++.+++.++++++.+++.++++++++|+.++...+.||.
T Consensus 100 ri~~~~--~~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~~~~~D~ 177 (260)
T d2frna1 100 RMAKVA--KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADR 177 (260)
T ss_dssp HHHHHC--CTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEE
T ss_pred HHHhhc--CCccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhccCCCCCE
Confidence 344543 489999999999999999999875579999999999999999999999998889999999999887789999
Q ss_pred EEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 140 IISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 140 I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
|++...- ....++..+.+.|++||.+.+..+.
T Consensus 178 Ii~~~p~------~~~~~l~~a~~~l~~gG~lh~~~~~ 209 (260)
T d2frna1 178 ILMGYVV------RTHEFIPKALSIAKDGAIIHYHNTV 209 (260)
T ss_dssp EEECCCS------SGGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred EEECCCC------chHHHHHHHHhhcCCCCEEEEEecc
Confidence 9986432 2245667778899999998776544
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.49 E-value=1.3e-13 Score=117.09 Aligned_cols=116 Identities=13% Similarity=0.256 Sum_probs=94.3
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCC
Q 048309 57 KHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAK 135 (288)
Q Consensus 57 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~ 135 (288)
.+...+.... ..+.+|||+|||+|..+..++.. +..+|+++|+|+.+++.|+++++..++ .+++++++|+.+..++.
T Consensus 97 lv~~~l~~~~-~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~-~~v~~~~~d~~~~~~~~ 174 (274)
T d2b3ta1 97 LVEQALARLP-EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAI-KNIHILQSDWFSALAGQ 174 (274)
T ss_dssp HHHHHHHHSC-SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTC-CSEEEECCSTTGGGTTC
T ss_pred hhhhHhhhhc-ccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCc-ccceeeecccccccCCC
Confidence 3445556554 35678999999999999999887 788999999999999999999999998 58999999998754667
Q ss_pred CCCEEEEccchh-------------hhC----------HhhHHHHHHHHhcccccCcEEEEE
Q 048309 136 KYDRIISCEMME-------------AVG----------HEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 136 ~fD~I~~~~~l~-------------~~~----------~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
+||+|+|+...- |-+ ......+++++.+.|+|||.+++.
T Consensus 175 ~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lE 236 (274)
T d2b3ta1 175 QFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLE 236 (274)
T ss_dssp CEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred ceeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEE
Confidence 999999985431 100 134567889999999999999985
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.48 E-value=9.9e-14 Score=108.05 Aligned_cols=106 Identities=13% Similarity=0.131 Sum_probs=87.5
Q ss_pred CCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC--CCCCCCEEEEccch
Q 048309 69 KEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP--KAKKYDRIISCEMM 146 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~--~~~~fD~I~~~~~l 146 (288)
.|.+|||+|||+|.++..++.+...+|+++|.++.+++.++++++..++.++++++++|+..+. ..++||+|++....
T Consensus 14 ~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DPPy 93 (152)
T d2esra1 14 NGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPPY 93 (152)
T ss_dssp CSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCSS
T ss_pred CCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccccceeEechhh
Confidence 6889999999999999988887445999999999999999999999999888999999998753 66899999998664
Q ss_pred hhhCHhhHHHHHHHH--hcccccCcEEEEEeec
Q 048309 147 EAVGHEYMEEYFGCC--ESLLAKDGLLVLQFSS 177 (288)
Q Consensus 147 ~~~~~~~~~~~l~~~--~~~LkpgG~l~~~~~~ 177 (288)
.. ......+..+ .++|+|||.++++...
T Consensus 94 ~~---~~~~~~l~~i~~~~~L~~~g~iiiE~~~ 123 (152)
T d2esra1 94 AK---ETIVATIEALAAKNLLSEQVMVVCETDK 123 (152)
T ss_dssp HH---HHHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred cc---chHHHHHHHHHHCCCcCCCeEEEEEeCC
Confidence 42 3344455544 3679999999997543
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.47 E-value=6.3e-14 Score=122.46 Aligned_cols=110 Identities=18% Similarity=0.134 Sum_probs=91.5
Q ss_pred CCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-----CCCCCCEEEE
Q 048309 68 SKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-----KAKKYDRIIS 142 (288)
Q Consensus 68 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-----~~~~fD~I~~ 142 (288)
+++.+|||+|||+|.++..++.....+|+++|+|+.+++.++++++.+|+..+++++++|+.+.. ...+||+|++
T Consensus 144 ~~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~Vi~ 223 (324)
T d2as0a2 144 QPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVL 223 (324)
T ss_dssp CTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCchhc
Confidence 57899999999999999999887445899999999999999999999999888999999987632 4579999999
Q ss_pred ccchhhhC-------HhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 143 CEMMEAVG-------HEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 143 ~~~l~~~~-------~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
.......+ ...+..++..+.++|+|||.+++.+.+
T Consensus 224 DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s 265 (324)
T d2as0a2 224 DPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCS 265 (324)
T ss_dssp CCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECC
T ss_pred CCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCC
Confidence 65432111 134667889999999999999987654
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.46 E-value=7e-14 Score=115.58 Aligned_cols=143 Identities=16% Similarity=0.175 Sum_probs=105.5
Q ss_pred hHHHHHhhhhhcCChHHHHHhhhhhcCCC----CCCCHHHHHHHHHHHHHHHc--CCCCCCEEEEECCcccHHHHHHHHc
Q 048309 17 QKSYFLRHISRKNSLAQAHRNISYHYDLD----EDEDLKVAQMRKHSLLIEKA--RVSKEHEVLEIGCGWGTFAIEVVRQ 90 (288)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~a~~Yd~~----~~~~l~~a~~~~~~~l~~~~--~~~~~~~vLDiGcG~G~~~~~la~~ 90 (288)
++...++..+|+.+++.. .+.|.. ....+. +-.....+++.+ .++++.+|||||||+|+.+..+++-
T Consensus 29 ~v~~a~~~vpRe~Fvp~~-----aY~D~~lpi~~~~~is--~P~~~a~~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l 101 (223)
T d1r18a_ 29 AVAQAMKETDRKHYSPRN-----PYMDAPQPIGGGVTIS--APHMHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRY 101 (223)
T ss_dssp HHHHHHHTSCGGGTCSSC-----TTBSSCEEEETTEEEC--CHHHHHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHH
T ss_pred HHHHHHHhCCHHHcCCcc-----ccCCCCccccCCceee--hhhhHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHH
Confidence 466777778888887632 233332 111111 113456777777 6889999999999999999888764
Q ss_pred c-------CCEEEEEcCCHHHHHHHHHHHHHc-----CCCCceEEEEcccCCCC-CCCCCCEEEEccchhhhCHhhHHHH
Q 048309 91 T-------GCNYTGITLSAEQMKYAEMKVNEA-----GLQDHIRLYLCDYRQLP-KAKKYDRIISCEMMEAVGHEYMEEY 157 (288)
Q Consensus 91 ~-------~~~v~giD~s~~~~~~a~~~~~~~-----g~~~~v~~~~~d~~~~~-~~~~fD~I~~~~~l~~~~~~~~~~~ 157 (288)
. +.+|+++|.++++++.|++++... ++ .|+.++.+|..+.. ..++||+|++..++.+++.
T Consensus 102 ~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~-~nv~~~~~d~~~~~~~~~~fD~Iiv~~a~~~~p~------ 174 (223)
T d1r18a_ 102 IKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDS-GQLLIVEGDGRKGYPPNAPYNAIHVGAAAPDTPT------ 174 (223)
T ss_dssp HHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHH-TSEEEEESCGGGCCGGGCSEEEEEECSCBSSCCH------
T ss_pred hhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCc-cEEEEEecccccccccccceeeEEEEeechhchH------
Confidence 1 248999999999999999886543 33 48999999998755 6679999999999988852
Q ss_pred HHHHhcccccCcEEEEEe
Q 048309 158 FGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 158 l~~~~~~LkpgG~l~~~~ 175 (288)
.+.+.|||||++++..
T Consensus 175 --~l~~~Lk~gG~lV~pv 190 (223)
T d1r18a_ 175 --ELINQLASGGRLIVPV 190 (223)
T ss_dssp --HHHHTEEEEEEEEEEE
T ss_pred --HHHHhcCCCcEEEEEE
Confidence 3468999999998843
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.45 E-value=5.6e-13 Score=109.48 Aligned_cols=156 Identities=15% Similarity=0.161 Sum_probs=117.1
Q ss_pred hhhhHHHHHhhhhhcCC--hHHHHHhhhhhcCCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc-
Q 048309 14 KVNQKSYFLRHISRKNS--LAQAHRNISYHYDLDEDEDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ- 90 (288)
Q Consensus 14 ~~~~~~~~~~~~~~~~~--~~~~~~~~a~~Yd~~~~~~l~~a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~- 90 (288)
++.+++ .+|..+.++ +-...++++...+. ...+...+.+.+..+++..+ +.+|||||||+|..+..+++.
T Consensus 6 ~~~~yv--~~~~~~~~p~~vl~~~~~~~~~~~~--~m~i~~~~G~lL~~lv~~~k---pk~ILEiGt~~G~Sti~la~al 78 (214)
T d2cl5a1 6 RILRYV--QQNAKPGDPQSVLEAIDTYCTQKEW--AMNVGDAKGQIMDAVIREYS---PSLVLELGAYCGYSAVRMARLL 78 (214)
T ss_dssp HHHHHH--HHHSCTTCHHHHHHHHHHHHHHTCC--CCSCHHHHHHHHHHHHHHHC---CSEEEEECCTTSHHHHHHHTTC
T ss_pred HHHHHH--HhcCCCCCHHHHHHHHHHHHhhcCC--ccccCHHHHHHHHHHHHhhC---CCEEEEEccCchhHHHHHHHhC
Confidence 344444 345555554 34666666666553 24677888889998888865 469999999999999999986
Q ss_pred -cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-------CCCCCCEEEEccchhhhCHhhHHHHHHHHh
Q 048309 91 -TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-------KAKKYDRIISCEMMEAVGHEYMEEYFGCCE 162 (288)
Q Consensus 91 -~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-------~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~ 162 (288)
.+.+++++|.++++.+.|+++++..|+.++++++.+|..+.. ..++||+|+....-... .....+.++.
T Consensus 79 ~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~D~ifiD~~~~~~---~~~~~l~~~~ 155 (214)
T d2cl5a1 79 QPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDMVFLDHWKDRY---LPDTLLLEKC 155 (214)
T ss_dssp CTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCCEEEEEECSCGGGH---HHHHHHHHHT
T ss_pred CCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhcccccccceeeeccccccc---ccHHHHHHHh
Confidence 467999999999999999999999999888999999997641 24689999987432221 2234567778
Q ss_pred cccccCcEEEEEeecCC
Q 048309 163 SLLAKDGLLVLQFSSTP 179 (288)
Q Consensus 163 ~~LkpgG~l~~~~~~~~ 179 (288)
++|+|||++++.+...+
T Consensus 156 ~lLkpGGvIv~Ddvl~~ 172 (214)
T d2cl5a1 156 GLLRKGTVLLADNVIVP 172 (214)
T ss_dssp TCEEEEEEEEESCCCCC
T ss_pred CccCCCcEEEEeCcCCC
Confidence 99999999888654433
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=99.45 E-value=8e-14 Score=121.43 Aligned_cols=108 Identities=20% Similarity=0.199 Sum_probs=89.7
Q ss_pred CCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCC----C-CCCCCCEEEE
Q 048309 68 SKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQL----P-KAKKYDRIIS 142 (288)
Q Consensus 68 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~----~-~~~~fD~I~~ 142 (288)
.+|.+|||++||+|.++..++.. +.+|+++|+|+.+++.++++++.+|+ ++++++++|+.++ . ..++||+|++
T Consensus 144 ~~g~rVLDl~~gtG~~s~~~a~g-~~~V~~vD~s~~al~~a~~n~~~ngl-~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~ 221 (318)
T d1wxxa2 144 FRGERALDVFSYAGGFALHLALG-FREVVAVDSSAEALRRAEENARLNGL-GNVRVLEANAFDLLRRLEKEGERFDLVVL 221 (318)
T ss_dssp CCEEEEEEETCTTTHHHHHHHHH-EEEEEEEESCHHHHHHHHHHHHHTTC-TTEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred hCCCeeeccCCCCcHHHHHHHhc-CCcEEeecchHHHHHHHHHHHHHcCC-CCcceeeccHHHHhhhhHhhhcCCCEEEE
Confidence 36889999999999999998874 67999999999999999999999999 5899999999774 2 5679999999
Q ss_pred ccchhhhC-------HhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 143 CEMMEAVG-------HEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 143 ~~~l~~~~-------~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
.......+ ......++..+.++|+|||.+++.+.+
T Consensus 222 DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs 263 (318)
T d1wxxa2 222 DPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCS 263 (318)
T ss_dssp CCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred cCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 75432111 144567899999999999999986654
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.42 E-value=5.5e-13 Score=107.49 Aligned_cols=120 Identities=24% Similarity=0.371 Sum_probs=99.6
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC---
Q 048309 57 KHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP--- 132 (288)
Q Consensus 57 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~--- 132 (288)
.+..+++.+.+.++..+||++||+|..+..+++. ++++|+|+|.++++++.|+++++..+ .++.++++++.++.
T Consensus 11 ll~evi~~l~~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~--~r~~~~~~~f~~~~~~~ 88 (192)
T d1m6ya2 11 MVREVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS--DRVSLFKVSYREADFLL 88 (192)
T ss_dssp THHHHHHHHCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT--TTEEEEECCGGGHHHHH
T ss_pred HHHHHHHhhCCCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhcccc--ccccchhHHHhhHHHHH
Confidence 4567888889999999999999999999999987 78899999999999999999987654 58999999997753
Q ss_pred ---CCCCCCEEEEccchhh--h-----CHhhHHHHHHHHhcccccCcEEEEEeecC
Q 048309 133 ---KAKKYDRIISCEMMEA--V-----GHEYMEEYFGCCESLLAKDGLLVLQFSST 178 (288)
Q Consensus 133 ---~~~~fD~I~~~~~l~~--~-----~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 178 (288)
..+++|.|+....+.- + ........+..+.++|+|||.+++.++..
T Consensus 89 ~~~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~s 144 (192)
T d1m6ya2 89 KTLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFHS 144 (192)
T ss_dssp HHTTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESSH
T ss_pred HHcCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeecccc
Confidence 3579999998765421 1 11556788999999999999999876553
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.39 E-value=1.9e-12 Score=111.23 Aligned_cols=120 Identities=18% Similarity=0.177 Sum_probs=92.1
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCC-ceEEEEcccCCCC--
Q 048309 56 RKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQD-HIRLYLCDYRQLP-- 132 (288)
Q Consensus 56 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~-~v~~~~~d~~~~~-- 132 (288)
+.+...+... .++.+|||++||+|.++..++.. +++|++||.|+.+++.|+++++.+++.. +++++++|+.++-
T Consensus 121 ~~~~~~~~~~--~~~~rVLdlf~~tG~~sl~aa~~-GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~ 197 (309)
T d2igta1 121 EWLKNAVETA--DRPLKVLNLFGYTGVASLVAAAA-GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQR 197 (309)
T ss_dssp HHHHHHHHHS--SSCCEEEEETCTTCHHHHHHHHT-TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHH
T ss_pred HHHHHHHhhc--cCCCeEEEecCCCcHHHHHHHhC-CCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHH
Confidence 3344444443 36789999999999999999885 7899999999999999999999998854 6999999998753
Q ss_pred ---CCCCCCEEEEccchhhh--------CHhhHHHHHHHHhcccccCcEEEEEeecC
Q 048309 133 ---KAKKYDRIISCEMMEAV--------GHEYMEEYFGCCESLLAKDGLLVLQFSST 178 (288)
Q Consensus 133 ---~~~~fD~I~~~~~l~~~--------~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 178 (288)
...+||+|++...-... -......+++.+..+|+|||.+++.+...
T Consensus 198 ~~~~~~~fD~IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~~s 254 (309)
T d2igta1 198 EERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYS 254 (309)
T ss_dssp HHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECC
T ss_pred HhhcCCCCCEEEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEecCC
Confidence 45789999986431100 01345667788899999999877765543
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=99.38 E-value=9.6e-13 Score=104.34 Aligned_cols=106 Identities=15% Similarity=0.212 Sum_probs=77.8
Q ss_pred CCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCC--CC-CCCCCCEEEEcc
Q 048309 68 SKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQ--LP-KAKKYDRIISCE 144 (288)
Q Consensus 68 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~--~~-~~~~fD~I~~~~ 144 (288)
..+.+|||+|||+|.++..++.+ +++++++|.++.+++.++++++..++..++....+|... .. ...+||+|++..
T Consensus 40 ~~g~~vLDl~~G~G~~~i~a~~~-ga~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~If~DP 118 (171)
T d1ws6a1 40 PRRGRFLDPFAGSGAVGLEAASE-GWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAP 118 (171)
T ss_dssp TTCCEEEEETCSSCHHHHHHHHT-TCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECC
T ss_pred cCCCeEEEeccccchhhhhhhhc-cchhhhcccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCCccceeEEcc
Confidence 46789999999999999998886 789999999999999999999999986544444444321 11 557899999986
Q ss_pred chhhhCHhhHHHHHHHHhcccccCcEEEEEee
Q 048309 145 MMEAVGHEYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 145 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
.+..--.+....+++ ..+|+|||+++++..
T Consensus 119 PY~~~~~~~l~~l~~--~~ll~~~g~ivie~~ 148 (171)
T d1ws6a1 119 PYAMDLAALFGELLA--SGLVEAGGLYVLQHP 148 (171)
T ss_dssp CTTSCTTHHHHHHHH--HTCEEEEEEEEEEEE
T ss_pred ccccCHHHHHHHHHH--cCCcCCCeEEEEEec
Confidence 643211122233332 368999999998653
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.37 E-value=1.5e-12 Score=107.07 Aligned_cols=148 Identities=16% Similarity=0.162 Sum_probs=111.5
Q ss_pred HHhhhhhcCChHHHHHhhhhhcCCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc--cCCEEEEE
Q 048309 21 FLRHISRKNSLAQAHRNISYHYDLDEDEDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ--TGCNYTGI 98 (288)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~a~~Yd~~~~~~l~~a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gi 98 (288)
.+.|..+++++-...+..+..-.. ....+...+.+.+..+++..+ .++|||||||+|..+..+++. .+.+++++
T Consensus 15 ~~~~~~~~~~~l~~l~~~t~~~~~-~~~~i~~~~g~lL~~L~~~~~---~k~vLEiGt~~GyStl~~a~al~~~g~i~ti 90 (219)
T d2avda1 15 LLSRSMREHPALRSLRLLTLEQPQ-GDSMMTCEQAQLLANLARLIQ---AKKALDLGTFTGYSALALALALPADGRVVTC 90 (219)
T ss_dssp HHHTTCCCCHHHHHHHHHHHTSTT-GGGSCCHHHHHHHHHHHHHTT---CCEEEEECCTTSHHHHHHHTTSCTTCEEEEE
T ss_pred HHHhCCCCCHHHHHHHHHHHhCCC-CCcccCHHHHHHHHHHHHccC---CCeEEEEechhhHHHHHHHHhCCCCceEEEE
Confidence 344555555555444444322111 112344567777777777754 569999999999999999986 36799999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-------CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEE
Q 048309 99 TLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-------KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLL 171 (288)
Q Consensus 99 D~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-------~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l 171 (288)
|.+++..+.|+++++..|+.++++++.+|+.+.. ..++||+|+.... +.....+++.+.++|+|||.+
T Consensus 91 e~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~fD~ifiD~d-----k~~y~~~~~~~~~lL~~GGvi 165 (219)
T d2avda1 91 EVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDVAVVDAD-----KENCSAYYERCLQLLRPGGIL 165 (219)
T ss_dssp ESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEEEEECSC-----STTHHHHHHHHHHHEEEEEEE
T ss_pred eechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccCCccEEEEeCC-----HHHHHHHHHHHHHHhcCCcEE
Confidence 9999999999999999999989999999986531 3578999998632 245678889999999999999
Q ss_pred EEEeec
Q 048309 172 VLQFSS 177 (288)
Q Consensus 172 ~~~~~~ 177 (288)
++.+..
T Consensus 166 i~Dn~l 171 (219)
T d2avda1 166 AVLRVL 171 (219)
T ss_dssp EEECCS
T ss_pred EEeCCc
Confidence 996654
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.36 E-value=5.5e-12 Score=105.49 Aligned_cols=113 Identities=14% Similarity=0.137 Sum_probs=93.8
Q ss_pred HHHHHHHcC-CCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCC
Q 048309 58 HSLLIEKAR-VSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAK 135 (288)
Q Consensus 58 ~~~l~~~~~-~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~ 135 (288)
...+++... .....+|||||||+|.++..++++ |..+++.+|+ |+.+ +..+..++++++.+|+.+..+
T Consensus 69 ~~~l~~~~~~f~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi-------~~~~~~~ri~~~~gd~~~~~p-- 138 (244)
T d1fp1d2 69 MKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVI-------ENAPPLSGIEHVGGDMFASVP-- 138 (244)
T ss_dssp HHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHH-------TTCCCCTTEEEEECCTTTCCC--
T ss_pred HHHHHHhcccccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecc-hhhh-------hccCCCCCeEEecCCcccccc--
Confidence 355666666 456689999999999999999988 8899999997 5443 334445789999999976433
Q ss_pred CCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCCC
Q 048309 136 KYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPD 180 (288)
Q Consensus 136 ~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 180 (288)
..|++++..++|+.++++...+++++++.|+|||++++.+...++
T Consensus 139 ~~D~~~l~~vLh~~~de~~~~iL~~~~~aL~pgg~llI~e~v~~~ 183 (244)
T d1fp1d2 139 QGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPE 183 (244)
T ss_dssp CEEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECS
T ss_pred cceEEEEehhhhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEEecC
Confidence 459999999999999889999999999999999999998877554
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=99.36 E-value=1.4e-12 Score=113.17 Aligned_cols=116 Identities=16% Similarity=0.126 Sum_probs=91.7
Q ss_pred HHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCC-CceEEEEcccCCCC-----C
Q 048309 60 LLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQ-DHIRLYLCDYRQLP-----K 133 (288)
Q Consensus 60 ~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~-~~v~~~~~d~~~~~-----~ 133 (288)
.++..+ .+|.+|||++||+|.++..++.....+|+++|+|+.+++.++++++.+++. .+++++++|+.++- .
T Consensus 137 ~l~~~~--~~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~ 214 (317)
T d2b78a2 137 ELINGS--AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRH 214 (317)
T ss_dssp HHHHTT--TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHT
T ss_pred HHHHHh--hCCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhh
Confidence 344443 478999999999999999887753448999999999999999999999984 57999999997642 4
Q ss_pred CCCCCEEEEccchhhh-------CHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 134 AKKYDRIISCEMMEAV-------GHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 134 ~~~fD~I~~~~~l~~~-------~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
.++||+|++...-..- ...+..++++.+.++|+|||.+++.+.+
T Consensus 215 ~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs 265 (317)
T d2b78a2 215 HLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNA 265 (317)
T ss_dssp TCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred cCCCCEEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 5789999997432100 0145678999999999999999986653
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.32 E-value=6.6e-12 Score=103.66 Aligned_cols=153 Identities=12% Similarity=0.100 Sum_probs=115.6
Q ss_pred hhhHHHHHhhhhhcCChHHHHHhhhhhcCCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc--cC
Q 048309 15 VNQKSYFLRHISRKNSLAQAHRNISYHYDLDEDEDLKVAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ--TG 92 (288)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~a~~Yd~~~~~~l~~a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~--~~ 92 (288)
|++++.-.+-..+++++-....+.+..... .......++.+.+..+++..+ +++|||||+++|..+..+++. .+
T Consensus 9 l~~Yi~~~s~~~~~~~~l~~l~~~~~~~~~-~~m~~~~~~g~~L~~L~~~~~---~k~iLEiGT~~GyStl~la~al~~~ 84 (227)
T d1susa1 9 LYQYILETSVFPREHEAMKELREVTAKHPW-NIMTTSADEGQFLSMLLKLIN---AKNTMEIGVYTGYSLLATALAIPED 84 (227)
T ss_dssp HHHHHHHHHTSSSCTTHHHHHHHHHHTSTT-GGGSCCHHHHHHHHHHHHHHT---CCEEEEECCGGGHHHHHHHHHSCTT
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHhCCC-cccccCHHHHHHHHHHHHhcC---CCcEEEecchhhhhHHHHHhhCCCC
Confidence 444443322234566666655555543332 122344677788888888764 569999999999999999976 46
Q ss_pred CEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC--------CCCCCCEEEEccchhhhCHhhHHHHHHHHhcc
Q 048309 93 CNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP--------KAKKYDRIISCEMMEAVGHEYMEEYFGCCESL 164 (288)
Q Consensus 93 ~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~--------~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~ 164 (288)
++++.+|.+++..+.|+++++..|+.++++++.+|+.+.- ..++||+|+.... +.....+++.+.++
T Consensus 85 g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~fD~iFiDa~-----k~~y~~~~e~~~~l 159 (227)
T d1susa1 85 GKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYDFIFVDAD-----KDNYLNYHKRLIDL 159 (227)
T ss_dssp CEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTCBSEEEECSC-----STTHHHHHHHHHHH
T ss_pred cEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCCceeEEEeccc-----hhhhHHHHHHHHhh
Confidence 7999999999999999999999999889999999997632 2468999998642 24578899999999
Q ss_pred cccCcEEEEEee
Q 048309 165 LAKDGLLVLQFS 176 (288)
Q Consensus 165 LkpgG~l~~~~~ 176 (288)
|+|||.+++...
T Consensus 160 l~~gGiii~DNv 171 (227)
T d1susa1 160 VKVGGVIGYDNT 171 (227)
T ss_dssp BCTTCCEEEETT
T ss_pred cCCCcEEEEccC
Confidence 999999999654
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.29 E-value=1.3e-11 Score=100.14 Aligned_cols=88 Identities=11% Similarity=0.133 Sum_probs=72.7
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCC
Q 048309 57 KHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKK 136 (288)
Q Consensus 57 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~ 136 (288)
.+-.++...+...|.+|||+|||+|.++..++.....+|+|+|+++.+++.++++++..+. +.+++.+|...++ ++
T Consensus 34 ~~~~~~~~~~dl~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~~~--~~~~~~~d~~~~~--~~ 109 (201)
T d1wy7a1 34 ELLWLAYSLGDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKG--KFKVFIGDVSEFN--SR 109 (201)
T ss_dssp HHHHHHHHTTSSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTT--SEEEEESCGGGCC--CC
T ss_pred HHHHHHHhcCCCCCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcCC--CceEEECchhhhC--Cc
Confidence 3334555566557899999999999999988876446899999999999999999988875 6899999988764 68
Q ss_pred CCEEEEccchhh
Q 048309 137 YDRIISCEMMEA 148 (288)
Q Consensus 137 fD~I~~~~~l~~ 148 (288)
||+|+++..+..
T Consensus 110 fD~Vi~nPP~~~ 121 (201)
T d1wy7a1 110 VDIVIMNPPFGS 121 (201)
T ss_dssp CSEEEECCCCSS
T ss_pred CcEEEEcCcccc
Confidence 999999877644
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=99.25 E-value=1.6e-11 Score=98.07 Aligned_cols=107 Identities=13% Similarity=0.107 Sum_probs=88.5
Q ss_pred CCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-----CCCCCCEEEE
Q 048309 68 SKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-----KAKKYDRIIS 142 (288)
Q Consensus 68 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-----~~~~fD~I~~ 142 (288)
..+.+|||++||+|.++...+.+...+|++||.++.+++.++++++..+...+++++++|+.++- ...+||+|++
T Consensus 40 ~~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~~~~~fDlIfl 119 (182)
T d2fhpa1 40 FDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLL 119 (182)
T ss_dssp CSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred cCCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhcccCCCcceEEe
Confidence 46899999999999999999987555899999999999999999998888778999999997632 4568999999
Q ss_pred ccchhhhCHhhHHHHHHHHh--cccccCcEEEEEeec
Q 048309 143 CEMMEAVGHEYMEEYFGCCE--SLLAKDGLLVLQFSS 177 (288)
Q Consensus 143 ~~~l~~~~~~~~~~~l~~~~--~~LkpgG~l~~~~~~ 177 (288)
...... ......+..+. .+|+++|.++++...
T Consensus 120 DPPY~~---~~~~~~l~~i~~~~~L~~~giIi~E~~~ 153 (182)
T d2fhpa1 120 DPPYAK---QEIVSQLEKMLERQLLTNEAVIVCETDK 153 (182)
T ss_dssp CCCGGG---CCHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred chhhhh---hHHHHHHHHHHHCCCCCCCEEEEEEcCC
Confidence 877542 34566677664 579999999987543
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.24 E-value=1.7e-11 Score=98.82 Aligned_cols=80 Identities=16% Similarity=0.219 Sum_probs=65.0
Q ss_pred HHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCE
Q 048309 60 LLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDR 139 (288)
Q Consensus 60 ~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~ 139 (288)
..+...+--.|++|||+|||+|.++..++.....+|+|+|+++.+++.|++++ .+++++++|+.+++ ++||+
T Consensus 39 ~~~~~~~dl~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~ar~N~------~~~~~~~~D~~~l~--~~fD~ 110 (197)
T d1ne2a_ 39 IEIYNDGNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNC------GGVNFMVADVSEIS--GKYDT 110 (197)
T ss_dssp HHHHHHTSSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHC------TTSEEEECCGGGCC--CCEEE
T ss_pred HHHHHcCCCCCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHHHHHcc------ccccEEEEehhhcC--CcceE
Confidence 33444444578999999999999998888764458999999999999999875 36899999998875 78999
Q ss_pred EEEccchh
Q 048309 140 IISCEMME 147 (288)
Q Consensus 140 I~~~~~l~ 147 (288)
|+++..+.
T Consensus 111 Vi~NPPfg 118 (197)
T d1ne2a_ 111 WIMNPPFG 118 (197)
T ss_dssp EEECCCC-
T ss_pred EEeCcccc
Confidence 99987653
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=99.24 E-value=1.3e-11 Score=98.82 Aligned_cols=104 Identities=13% Similarity=0.142 Sum_probs=85.6
Q ss_pred CCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC--CCCCCCEEEEccch
Q 048309 69 KEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP--KAKKYDRIISCEMM 146 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~--~~~~fD~I~~~~~l 146 (288)
.+.+|||++||+|.++..++.+...+|+.||.++.+++.++++++..+. .+++++.+|+.++. ...+||+|++....
T Consensus 43 ~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~~-~~~~ii~~d~~~~l~~~~~~fDlIf~DPPY 121 (183)
T d2fpoa1 43 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKA-GNARVVNSNAMSFLAQKGTPHNIVFVDPPF 121 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTC-CSEEEECSCHHHHHSSCCCCEEEEEECCSS
T ss_pred chhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhccc-cceeeeeecccccccccccccCEEEEcCcc
Confidence 5679999999999999998887455899999999999999999998777 57999999987753 56789999998775
Q ss_pred hhhCHhhHHHHHHHHh--cccccCcEEEEEee
Q 048309 147 EAVGHEYMEEYFGCCE--SLLAKDGLLVLQFS 176 (288)
Q Consensus 147 ~~~~~~~~~~~l~~~~--~~LkpgG~l~~~~~ 176 (288)
.. ......+..+. .+|+++|.++++..
T Consensus 122 ~~---~~~~~~l~~l~~~~~L~~~~iIiiE~~ 150 (183)
T d2fpoa1 122 RR---GLLEETINLLEDNGWLADEALIYVESE 150 (183)
T ss_dssp ST---TTHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred cc---chHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 43 34455566554 47999999999754
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.23 E-value=4.9e-11 Score=99.61 Aligned_cols=102 Identities=10% Similarity=0.080 Sum_probs=85.8
Q ss_pred CCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCEEEEccchh
Q 048309 69 KEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMME 147 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~~~~~l~ 147 (288)
...+|+|||||+|..+..++++ +..++++.|+ |+.+ +..+..++++++.+|+.+.. ..+|++++..++|
T Consensus 80 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi-------~~~~~~~rv~~~~gD~f~~~--p~aD~~~l~~vLH 149 (244)
T d1fp2a2 80 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVV-------ENLSGSNNLTYVGGDMFTSI--PNADAVLLKYILH 149 (244)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHH-------TTCCCBTTEEEEECCTTTCC--CCCSEEEEESCGG
T ss_pred CceEEEEecCCccHHHHHHHHhCCCCeEEEecC-HHHH-------HhCcccCceEEEecCcccCC--CCCcEEEEEeecc
Confidence 4468999999999999999988 8899999998 5443 34455579999999998743 3689999999999
Q ss_pred hhCHhhHHHHHHHHhcccccC---cEEEEEeecCCC
Q 048309 148 AVGHEYMEEYFGCCESLLAKD---GLLVLQFSSTPD 180 (288)
Q Consensus 148 ~~~~~~~~~~l~~~~~~Lkpg---G~l~~~~~~~~~ 180 (288)
+.++++-.++++++++.|+|| |++++.+...++
T Consensus 150 dw~d~~~~~iL~~~~~al~pgg~~~~lli~e~~~~~ 185 (244)
T d1fp2a2 150 NWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDK 185 (244)
T ss_dssp GSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECT
T ss_pred cCChHHHHHHHHHHHHHcCcccCCcEEEEEEeecCC
Confidence 999888899999999999998 778887765443
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=99.22 E-value=5e-11 Score=100.69 Aligned_cols=117 Identities=15% Similarity=0.192 Sum_probs=86.2
Q ss_pred HHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC--CCCC
Q 048309 59 SLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP--KAKK 136 (288)
Q Consensus 59 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~--~~~~ 136 (288)
..+++.....+..+++|+|||+|..+..+++.+.++|+++|+|+.+++.|+++++..++..++.+..+|+.+.. ..++
T Consensus 100 ~~~~~~~~~~~~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~~~~~~ 179 (271)
T d1nv8a_ 100 ELALELIRKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFAS 179 (271)
T ss_dssp HHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTT
T ss_pred hhhhhhhccccccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHHHHHHcCCCceeEEeecccccccccccCc
Confidence 33443333334568999999999999998877888999999999999999999999999888999999998754 4479
Q ss_pred CCEEEEccchh----hh-------CH------hhHHHHH-HHHhcccccCcEEEEEe
Q 048309 137 YDRIISCEMME----AV-------GH------EYMEEYF-GCCESLLAKDGLLVLQF 175 (288)
Q Consensus 137 fD~I~~~~~l~----~~-------~~------~~~~~~l-~~~~~~LkpgG~l~~~~ 175 (288)
||+|+|+...- .. |. ++-..++ +-+.++|+|||.+++..
T Consensus 180 fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~Ei 236 (271)
T d1nv8a_ 180 IEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEI 236 (271)
T ss_dssp CCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEEC
T ss_pred ccEEEEcccccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEEE
Confidence 99999985320 00 00 1101122 22457899999998854
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.19 E-value=1.6e-10 Score=96.48 Aligned_cols=112 Identities=13% Similarity=0.126 Sum_probs=89.9
Q ss_pred HHHHHHcCC-CCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCC
Q 048309 59 SLLIEKARV-SKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKK 136 (288)
Q Consensus 59 ~~l~~~~~~-~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~ 136 (288)
..++..... ....+|+|||||+|.++..++++ |+.+++++|+.+ .+ +......+++++.+|+.+..+ .
T Consensus 70 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi-------~~~~~~~r~~~~~~d~~~~~P--~ 139 (243)
T d1kyza2 70 KKILETYTGFEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPH-VI-------EDAPSYPGVEHVGGDMFVSIP--K 139 (243)
T ss_dssp HHHHHHCCTTSSCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTT-TT-------TTCCCCTTEEEEECCTTTCCC--C
T ss_pred HHHHHhcccccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHH-hh-------hhcccCCceEEecccccccCC--C
Confidence 456666554 33578999999999999999998 889999999854 33 333444689999999976433 3
Q ss_pred CCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCCC
Q 048309 137 YDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTPD 180 (288)
Q Consensus 137 fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 180 (288)
.|+++...+++..+.++...+++++++.|+|||++++.+...++
T Consensus 140 ad~~~l~~vlh~~~d~~~~~iL~~~~~al~pgg~~li~d~~~~~ 183 (243)
T d1kyza2 140 ADAVFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAECILPV 183 (243)
T ss_dssp CSCEECSSSSTTSCHHHHHHHHHHHHHHCCSSSCEEEEECEECS
T ss_pred cceEEEEEEeecCCHHHHHHHHHHHHHhcCCCceEEEEEEEecC
Confidence 67888889999998889999999999999999999998776443
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.17 E-value=1.3e-10 Score=97.24 Aligned_cols=80 Identities=18% Similarity=0.195 Sum_probs=68.8
Q ss_pred CCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-------CCCCCCEE
Q 048309 69 KEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-------KAKKYDRI 140 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-------~~~~fD~I 140 (288)
+..++||+|||+|..+..++++ ++++++|+|+|+++++.|+++++.+++.+++.++..+..... ..++||+|
T Consensus 61 ~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i 140 (250)
T d2h00a1 61 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC 140 (250)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred ccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeEE
Confidence 3468999999999999999988 889999999999999999999999999889999887664421 34689999
Q ss_pred EEccchhh
Q 048309 141 ISCEMMEA 148 (288)
Q Consensus 141 ~~~~~l~~ 148 (288)
+|+..+..
T Consensus 141 vsNPPY~~ 148 (250)
T d2h00a1 141 MCNPPFFA 148 (250)
T ss_dssp EECCCCC-
T ss_pred EecCcccc
Confidence 99987664
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.17 E-value=1.2e-10 Score=93.84 Aligned_cols=105 Identities=16% Similarity=0.155 Sum_probs=78.1
Q ss_pred CCCEEEEECCcccHH----HHHHHHc-----cCCEEEEEcCCHHHHHHHHHHH--------------H----HcCCC---
Q 048309 69 KEHEVLEIGCGWGTF----AIEVVRQ-----TGCNYTGITLSAEQMKYAEMKV--------------N----EAGLQ--- 118 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~----~~~la~~-----~~~~v~giD~s~~~~~~a~~~~--------------~----~~g~~--- 118 (288)
+..+|+++|||+|.- ++.+.+. ...+|+|.|+|+.+++.|++-. . ..+..
T Consensus 24 ~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~~ 103 (193)
T d1af7a2 24 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 103 (193)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCccc
Confidence 456999999999983 4444332 1237999999999999997321 0 10100
Q ss_pred ---------CceEEEEcccCCCC--CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEE
Q 048309 119 ---------DHIRLYLCDYRQLP--KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVL 173 (288)
Q Consensus 119 ---------~~v~~~~~d~~~~~--~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~ 173 (288)
..+.+...+..... +.+.||+|+|.+++.+++++...++++++++.|+|||.|++
T Consensus 104 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~l 169 (193)
T d1af7a2 104 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFA 169 (193)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred eeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEE
Confidence 22455556665533 45789999999999999988889999999999999999998
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=99.12 E-value=3.1e-10 Score=91.98 Aligned_cols=101 Identities=15% Similarity=0.279 Sum_probs=89.0
Q ss_pred CCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCEEEEccch
Q 048309 68 SKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMM 146 (288)
Q Consensus 68 ~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~~~~~l 146 (288)
-++.+++|+|||.|-.+..+|-. +..+++.+|.+..-+...++.....++ .|+++++..+++.....+||+|++-.+
T Consensus 64 ~~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L-~nv~v~~~R~E~~~~~~~fD~V~sRA~- 141 (207)
T d1jsxa_ 64 LQGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKL-ENIEPVQSRVEEFPSEPPFDGVISRAF- 141 (207)
T ss_dssp CCSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTC-SSEEEEECCTTTSCCCSCEEEEECSCS-
T ss_pred hcCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCC-cceeeeccchhhhccccccceehhhhh-
Confidence 35679999999999999999876 889999999999999999999999999 589999999999876678999998644
Q ss_pred hhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 147 EAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 147 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
.....++.-+...++++|.+++.-
T Consensus 142 -----~~~~~ll~~~~~~l~~~g~~~~~K 165 (207)
T d1jsxa_ 142 -----ASLNDMVSWCHHLPGEQGRFYALK 165 (207)
T ss_dssp -----SSHHHHHHHHTTSEEEEEEEEEEE
T ss_pred -----cCHHHHHHHHHHhcCCCcEEEEEC
Confidence 456788888999999999999854
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=98.97 E-value=1.6e-09 Score=89.52 Aligned_cols=89 Identities=20% Similarity=0.303 Sum_probs=72.6
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CC
Q 048309 56 RKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KA 134 (288)
Q Consensus 56 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~ 134 (288)
..+..+++.+++.++.+|||||||+|.++..+++. +.+|++||+++.+++..+++.... ++++++.+|+.+++ +.
T Consensus 8 ~i~~~iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~-~~~v~avE~D~~l~~~l~~~~~~~---~n~~i~~~D~l~~~~~~ 83 (235)
T d1qama_ 8 HNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQR-CNFVTAIEIDHKLCKTTENKLVDH---DNFQVLNKDILQFKFPK 83 (235)
T ss_dssp HHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHTTTC---CSEEEECCCGGGCCCCS
T ss_pred HHHHHHHHhcCCCCCCeEEEECCCchHHHHHHHhC-cCceEEEeeccchHHHHHHHhhcc---cchhhhhhhhhhccccc
Confidence 45677888889999999999999999999999986 679999999999999999876543 58999999999987 43
Q ss_pred CCCCEEEEccchhhh
Q 048309 135 KKYDRIISCEMMEAV 149 (288)
Q Consensus 135 ~~fD~I~~~~~l~~~ 149 (288)
.....|+++-. +++
T Consensus 84 ~~~~~vv~NLP-YnI 97 (235)
T d1qama_ 84 NQSYKIFGNIP-YNI 97 (235)
T ss_dssp SCCCEEEEECC-GGG
T ss_pred cccceeeeeeh-hhh
Confidence 44445665544 344
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.96 E-value=3.1e-10 Score=96.27 Aligned_cols=109 Identities=19% Similarity=0.225 Sum_probs=83.8
Q ss_pred CCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHc---------CCCCceEEEEcccCCCC-CCCCC
Q 048309 68 SKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEA---------GLQDHIRLYLCDYRQLP-KAKKY 137 (288)
Q Consensus 68 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~---------g~~~~v~~~~~d~~~~~-~~~~f 137 (288)
+.+.+||.||+|.|..+..+.+++..+|++||+++.+++.|++.+... .-.++++++.+|+..+- ..++|
T Consensus 71 ~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~y 150 (276)
T d1mjfa_ 71 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRGF 150 (276)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCCE
T ss_pred CCCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccCCC
Confidence 456799999999999999988775568999999999999999865321 12368999999998765 55789
Q ss_pred CEEEEccchhhhCHhh--HHHHHHHHhcccccCcEEEEEee
Q 048309 138 DRIISCEMMEAVGHEY--MEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 138 D~I~~~~~l~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
|+|++...-..-+... -.++++.+.+.|+|||++++...
T Consensus 151 DvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~~ 191 (276)
T d1mjfa_ 151 DVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAG 191 (276)
T ss_dssp EEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CEEEEeCCCCCCCcccccCHHHHHhhHhhcCCCceEEEecC
Confidence 9999865432111111 26799999999999999988653
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=98.93 E-value=8.8e-09 Score=90.34 Aligned_cols=116 Identities=14% Similarity=0.222 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCC
Q 048309 52 VAQMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQL 131 (288)
Q Consensus 52 ~a~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~ 131 (288)
......++.+++.+...++.+|||+-||+|.++..|++. ..+|+|+|.++.+++.|+++++.+|+ .|++++.+|..+.
T Consensus 195 ~~~e~l~~~v~~~~~~~~~~~vlDLycG~G~fsl~La~~-~~~V~gvE~~~~ai~~A~~na~~n~i-~n~~~~~~~~~~~ 272 (358)
T d1uwva2 195 GVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQ-AASVVGVEGVPALVEKGQQNARLNGL-QNVTFYHENLEED 272 (358)
T ss_dssp HHHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHTTC-CSEEEEECCTTSC
T ss_pred hhhhHHHHHHHHhhccCCCceEEEecccccccchhcccc-ccEEEeccCcHHHHHHHHHhHHhccc-ccceeeecchhhh
Confidence 455566677888888888999999999999999999986 67999999999999999999999999 5999999999874
Q ss_pred C-----CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 132 P-----KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 132 ~-----~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
. ...++|+|+....=.-+ .+.++.+.+ ++|.-.+++++
T Consensus 273 ~~~~~~~~~~~d~vilDPPR~G~-----~~~~~~l~~-~~~~~ivYVSC 315 (358)
T d1uwva2 273 VTKQPWAKNGFDKVLLDPARAGA-----AGVMQQIIK-LEPIRIVYVSC 315 (358)
T ss_dssp CSSSGGGTTCCSEEEECCCTTCC-----HHHHHHHHH-HCCSEEEEEES
T ss_pred hhhhhhhhccCceEEeCCCCccH-----HHHHHHHHH-cCCCEEEEEeC
Confidence 3 34679999987553333 234444443 36666666654
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=98.92 E-value=1.6e-09 Score=93.25 Aligned_cols=109 Identities=20% Similarity=0.223 Sum_probs=84.8
Q ss_pred CCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHc--C--CCCceEEEEcccCCCC--CCCCCCEE
Q 048309 68 SKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEA--G--LQDHIRLYLCDYRQLP--KAKKYDRI 140 (288)
Q Consensus 68 ~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~--g--~~~~v~~~~~d~~~~~--~~~~fD~I 140 (288)
+.+++||.||+|.|..+..+.++ +..+|++||+++++++.|++.+... + -.++++++.+|+..+- .+++||+|
T Consensus 76 ~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvI 155 (312)
T d1uira_ 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (312)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccEE
Confidence 45679999999999999999887 5679999999999999999987431 1 1358999999998864 56789999
Q ss_pred EEccchhhh---CHhh--HHHHHHHHhcccccCcEEEEEee
Q 048309 141 ISCEMMEAV---GHEY--MEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 141 ~~~~~l~~~---~~~~--~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
++...-.+. +... -.++++.+.+.|+|||++++...
T Consensus 156 i~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~~ 196 (312)
T d1uira_ 156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTG 196 (312)
T ss_dssp EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEecC
Confidence 976431110 1111 26799999999999999998653
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=98.91 E-value=2.7e-09 Score=84.89 Aligned_cols=106 Identities=11% Similarity=0.132 Sum_probs=83.8
Q ss_pred CCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCC-ceEEEEcccCCC---C-CCCCCCEEEEc
Q 048309 69 KEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQD-HIRLYLCDYRQL---P-KAKKYDRIISC 143 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~-~v~~~~~d~~~~---~-~~~~fD~I~~~ 143 (288)
.+.+|||+.||||.++...+.+...+|+.||.+...++..+++++..+... ...+...|..+. . ...+||+|++.
T Consensus 43 ~~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFlD 122 (183)
T d2ifta1 43 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLD 122 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEEC
T ss_pred ccceEeecccCccceeeeeeeecceeeEEeecccchhhhHhhHHhhhcccccccccccccccccccccccCCcccEEEec
Confidence 567999999999999999999855699999999999999999999887743 467777776542 2 34579999998
Q ss_pred cchhhhCHhhHHHHHHHHh--cccccCcEEEEEeec
Q 048309 144 EMMEAVGHEYMEEYFGCCE--SLLAKDGLLVLQFSS 177 (288)
Q Consensus 144 ~~l~~~~~~~~~~~l~~~~--~~LkpgG~l~~~~~~ 177 (288)
..... ......+..+. .+|+++|.++++...
T Consensus 123 PPY~~---~~~~~~l~~l~~~~~L~~~~liiiE~~~ 155 (183)
T d2ifta1 123 PPFHF---NLAEQAISLLCENNWLKPNALIYVETEK 155 (183)
T ss_dssp CCSSS---CHHHHHHHHHHHTTCEEEEEEEEEEEES
T ss_pred hhHhh---hhHHHHHHHHHHhCCcCCCcEEEEEecC
Confidence 77653 34556666654 589999999997643
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=98.89 E-value=2.1e-09 Score=91.56 Aligned_cols=120 Identities=16% Similarity=0.209 Sum_probs=88.2
Q ss_pred HHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcC--C-CCceEEEEcccCC
Q 048309 55 MRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAG--L-QDHIRLYLCDYRQ 130 (288)
Q Consensus 55 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g--~-~~~v~~~~~d~~~ 130 (288)
.+.+.++.-.+. +.+++||-||.|.|..+..+.++ +..+|++||+++.+++.|++.+.... + .++++++.+|+..
T Consensus 76 hE~l~h~pl~~~-~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~ 154 (295)
T d1inla_ 76 HEMLAHVPMFLH-PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAE 154 (295)
T ss_dssp HHHHHHHHHHHS-SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHH
T ss_pred hhhhcchhHhhC-CCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHH
Confidence 344444433333 34679999999999999999987 45789999999999999998765321 1 3689999999988
Q ss_pred CC--CCCCCCEEEEccchhhhCH-h--hHHHHHHHHhcccccCcEEEEEe
Q 048309 131 LP--KAKKYDRIISCEMMEAVGH-E--YMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 131 ~~--~~~~fD~I~~~~~l~~~~~-~--~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
+- .+++||+|++...-....+ . --.++++.+.+.|+|||.+++..
T Consensus 155 ~l~~~~~~yDvIi~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~ 204 (295)
T d1inla_ 155 YVRKFKNEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAET 204 (295)
T ss_dssp HGGGCSSCEEEEEEEC----------CCSHHHHHHHHHHEEEEEEEEEEC
T ss_pred HHhcCCCCCCEEEEcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEec
Confidence 65 5678999998754322111 1 13689999999999999998864
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=98.86 E-value=6.8e-09 Score=90.03 Aligned_cols=116 Identities=14% Similarity=0.097 Sum_probs=87.8
Q ss_pred HHHHH-HHcCCCCCCEEEEECCcccHHHHHHHHc------cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCC
Q 048309 58 HSLLI-EKARVSKEHEVLEIGCGWGTFAIEVVRQ------TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQ 130 (288)
Q Consensus 58 ~~~l~-~~~~~~~~~~vLDiGcG~G~~~~~la~~------~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~ 130 (288)
+..++ ..+..+++.+|||.|||+|.++..+..+ ...+++|+|+++.+++.|+.+....+. +..+..+|...
T Consensus 105 m~~l~~~~~~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~--~~~~~~~d~~~ 182 (328)
T d2f8la1 105 VAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ--KMTLLHQDGLA 182 (328)
T ss_dssp HHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC--CCEEEESCTTS
T ss_pred HHHHHHHHhCCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhh--hhhhhcccccc
Confidence 33444 3345667789999999999999887653 234799999999999999998887765 57788888777
Q ss_pred CCCCCCCCEEEEccchhhhCH----------------hhHHHHHHHHhcccccCcEEEEEe
Q 048309 131 LPKAKKYDRIISCEMMEAVGH----------------EYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 131 ~~~~~~fD~I~~~~~l~~~~~----------------~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
.....+||+|+++..+..... .....++..+.+.|+|||++++..
T Consensus 183 ~~~~~~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~ 243 (328)
T d2f8la1 183 NLLVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLV 243 (328)
T ss_dssp CCCCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ccccccccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEe
Confidence 666689999999987632210 112347999999999999988743
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=98.82 E-value=1.8e-08 Score=82.99 Aligned_cols=128 Identities=13% Similarity=0.160 Sum_probs=98.5
Q ss_pred hhhhhcCCCCCCCHHHHHHHHHHHHHHHc------CCCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHH
Q 048309 37 NISYHYDLDEDEDLKVAQMRKHSLLIEKA------RVSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAE 109 (288)
Q Consensus 37 ~~a~~Yd~~~~~~l~~a~~~~~~~l~~~~------~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~ 109 (288)
.+...++.....+..+. ...++++.+ ....+.+++|||+|.|-.++.++-. +..+++.+|.+..-+...+
T Consensus 35 ~wN~~~NLts~~~~~~i---~~rHi~DSl~~~~~~~~~~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~ 111 (239)
T d1xdza_ 35 EWNEKINLTSITEKKEV---YLKHFYDSITAAFYVDFNQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLE 111 (239)
T ss_dssp HHHHHSCCCSCCSHHHH---HHHTHHHHHGGGGTSCGGGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHH
T ss_pred HhcCceEEEecCCHHHH---HHHhccchhhhhhhhcccCCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHH
Confidence 34455666544444433 233444443 2235679999999999999999875 7889999999999999999
Q ss_pred HHHHHcCCCCceEEEEcccCCCC----CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 110 MKVNEAGLQDHIRLYLCDYRQLP----KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 110 ~~~~~~g~~~~v~~~~~d~~~~~----~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
......++ .++.++...++++. ..++||+|++-.+ ..+..+++-+...+++||.+++.
T Consensus 112 ~v~~~L~L-~n~~i~~~R~E~~~~~~~~~~~~D~v~sRAv------a~l~~ll~~~~~~l~~~g~~i~~ 173 (239)
T d1xdza_ 112 KLSEALQL-ENTTFCHDRAETFGQRKDVRESYDIVTARAV------ARLSVLSELCLPLVKKNGLFVAL 173 (239)
T ss_dssp HHHHHHTC-SSEEEEESCHHHHTTCTTTTTCEEEEEEECC------SCHHHHHHHHGGGEEEEEEEEEE
T ss_pred HHHHHhCC-CCcEEEeehhhhccccccccccceEEEEhhh------hCHHHHHHHHhhhcccCCEEEEE
Confidence 99999999 58999999887754 2468999999644 55688899999999999999883
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.80 E-value=3.5e-09 Score=89.87 Aligned_cols=111 Identities=20% Similarity=0.214 Sum_probs=84.4
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHc---CCCCceEEEEcccCCCC--CCCCCCE
Q 048309 66 RVSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEA---GLQDHIRLYLCDYRQLP--KAKKYDR 139 (288)
Q Consensus 66 ~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~---g~~~~v~~~~~d~~~~~--~~~~fD~ 139 (288)
..+.+++||-||.|.|..+..+.++ +..+++++|+++++++.|++.+... --.++++++.+|+..+- ..++||+
T Consensus 75 ~~~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDv 154 (285)
T d2o07a1 75 SHPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDV 154 (285)
T ss_dssp TSSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEE
T ss_pred hCcCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCE
Confidence 3345679999999999999999987 5679999999999999999886531 11368999999987754 5578999
Q ss_pred EEEccchhhhCHh--hHHHHHHHHhcccccCcEEEEEee
Q 048309 140 IISCEMMEAVGHE--YMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 140 I~~~~~l~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
|++...-..-+.. .-.++++.+.+.|+|||++++...
T Consensus 155 Ii~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~ 193 (285)
T d2o07a1 155 IITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGE 193 (285)
T ss_dssp EEEECC-----------CHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEEcCCCCCCcccccccHHHHHHHHHhcCCCCeEEEecc
Confidence 9987432111111 135689999999999999998654
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=98.80 E-value=1.9e-08 Score=79.61 Aligned_cols=115 Identities=15% Similarity=0.156 Sum_probs=91.5
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC----
Q 048309 57 KHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP---- 132 (288)
Q Consensus 57 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~---- 132 (288)
.+..+++.+.+.++..++|..||.|+.+..+.+. +++|+|+|.++.+++.+++.. ..++.+++.++.++.
T Consensus 6 ll~Evl~~l~~~~g~~~vD~T~G~GGhs~~iL~~-~~~viaiD~D~~ai~~a~~~~-----~~~~~~~~~~f~~~~~~l~ 79 (182)
T d1wg8a2 6 LYQEALDLLAVRPGGVYVDATLGGAGHARGILER-GGRVIGLDQDPEAVARAKGLH-----LPGLTVVQGNFRHLKRHLA 79 (182)
T ss_dssp THHHHHHHHTCCTTCEEEETTCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHTC-----CTTEEEEESCGGGHHHHHH
T ss_pred HHHHHHHhcCCCCCCEEEEeCCCCcHHHHHHhcc-cCcEEEEhhhhhHHHHHhhcc-----ccceeEeehHHHHHHHHHH
Confidence 3567788888999999999999999999999886 679999999999999887642 257999999988754
Q ss_pred --CCCCCCEEEEccchhhh---C----HhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 133 --KAKKYDRIISCEMMEAV---G----HEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 133 --~~~~fD~I~~~~~l~~~---~----~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
..+.+|.|++...+... . .......+......|+|||.+++.++.
T Consensus 80 ~~~~~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fh 133 (182)
T d1wg8a2 80 ALGVERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFH 133 (182)
T ss_dssp HTTCSCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECS
T ss_pred HcCCCccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEecc
Confidence 34689999987544322 0 023455788889999999999987764
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=98.78 E-value=3.4e-09 Score=90.74 Aligned_cols=119 Identities=20% Similarity=0.187 Sum_probs=85.8
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCC---CCceEEEEcccCCC
Q 048309 56 RKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGL---QDHIRLYLCDYRQL 131 (288)
Q Consensus 56 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~---~~~v~~~~~d~~~~ 131 (288)
..+.++.-... +.+++||-||.|.|..+..+.++ +..+|+++|+++.+++.|++.+....- .++++++.+|...+
T Consensus 94 E~l~h~pl~~~-~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~ 172 (312)
T d2b2ca1 94 EMLAHLPMFAH-PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEF 172 (312)
T ss_dssp HHHHHHHHHHS-SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHH
T ss_pred HHhhhHHHhcC-CCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHH
Confidence 34444333333 35679999999999999999987 446999999999999999987643211 25899999999876
Q ss_pred C--CCCCCCEEEEccchhhhCHh--hHHHHHHHHhcccccCcEEEEEe
Q 048309 132 P--KAKKYDRIISCEMMEAVGHE--YMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 132 ~--~~~~fD~I~~~~~l~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
- ..++||+|++...-..-+.. .-.++++.+.+.|+|||+++...
T Consensus 173 l~~~~~~yDvII~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~ 220 (312)
T d2b2ca1 173 LKNHKNEFDVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQG 220 (312)
T ss_dssp HHHCTTCEEEEEECCC-------------HHHHHHHHEEEEEEEEEEC
T ss_pred HHhCCCCCCEEEEcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEec
Confidence 5 56789999987543221111 23678999999999999999864
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.77 E-value=1.1e-08 Score=87.00 Aligned_cols=119 Identities=16% Similarity=0.120 Sum_probs=87.9
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHc---CCCCceEEEEcccCCC
Q 048309 56 RKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEA---GLQDHIRLYLCDYRQL 131 (288)
Q Consensus 56 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~---g~~~~v~~~~~d~~~~ 131 (288)
+.+.++.-.+. +.+++||-||.|.|..+..+.++ +..+++++|+++++++.|++.+... .-.++++++.+|....
T Consensus 68 e~l~h~~~~~~-~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~ 146 (290)
T d1xj5a_ 68 EMITHLPLCSI-PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAF 146 (290)
T ss_dssp HHHHHHHHTTS-SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHH
T ss_pred HHHhhHHHhhC-CCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHH
Confidence 33444433333 45679999999999999999987 4468999999999999999976432 1236899999998764
Q ss_pred C---CCCCCCEEEEccchhhhCHh--hHHHHHHHHhcccccCcEEEEEe
Q 048309 132 P---KAKKYDRIISCEMMEAVGHE--YMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 132 ~---~~~~fD~I~~~~~l~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
- ..++||+|+....-..-+.. --.++++.+.+.|+|||++++..
T Consensus 147 l~~~~~~~yDvIi~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~ 195 (290)
T d1xj5a_ 147 LKNAAEGSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQA 195 (290)
T ss_dssp HHTSCTTCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred HhhccccCccEEEEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEec
Confidence 3 34689999986432111111 13679999999999999999864
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=98.77 E-value=2.4e-10 Score=95.20 Aligned_cols=97 Identities=16% Similarity=0.233 Sum_probs=76.5
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CCC
Q 048309 57 KHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAK 135 (288)
Q Consensus 57 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~ 135 (288)
.+..+++.+.+.++.+|||||||+|.++..|++. +.+|++||+++.+++.+++++... ++++++++|+.+++ +..
T Consensus 17 ii~kIv~~~~~~~~d~VLEIGpG~G~LT~~L~~~-~~~v~aIE~D~~l~~~l~~~~~~~---~n~~ii~~D~l~~~~~~~ 92 (245)
T d1yuba_ 17 VLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFNLSSEKLKLN---TRVTLIHQDILQFQFPNK 92 (245)
T ss_dssp THHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHH-SSEEEESSSSCSSSSSSSCTTTTC---SEEEECCSCCTTTTCCCS
T ss_pred HHHHHHHhcCCCCCCeEEEECCCccHHHHHHHhh-cCceeEeeecccchhhhhhhhhhc---cchhhhhhhhhccccccc
Confidence 4567889999999999999999999999999987 779999999999988887665432 58999999999988 555
Q ss_pred CCCEEEEccchhhhCHhhHHHHH
Q 048309 136 KYDRIISCEMMEAVGHEYMEEYF 158 (288)
Q Consensus 136 ~fD~I~~~~~l~~~~~~~~~~~l 158 (288)
.++.|+++.. +|++.+-...++
T Consensus 93 ~~~~vv~NLP-Y~Ist~il~~~l 114 (245)
T d1yuba_ 93 QRYKIVGNIP-YHLSTQIIKKVV 114 (245)
T ss_dssp SEEEEEEECC-SSSCHHHHHHHH
T ss_pred eeeeEeeeee-hhhhHHHHHHHh
Confidence 6666776655 456433344443
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=98.76 E-value=1.2e-08 Score=86.18 Aligned_cols=108 Identities=17% Similarity=0.235 Sum_probs=84.6
Q ss_pred CCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHc-C--CCCceEEEEcccCCCC--CCCCCCEEE
Q 048309 68 SKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEA-G--LQDHIRLYLCDYRQLP--KAKKYDRII 141 (288)
Q Consensus 68 ~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~-g--~~~~v~~~~~d~~~~~--~~~~fD~I~ 141 (288)
..+++||-||.|.|..+..+.++ +..+|+++|+++++++.|++.+... + -.++++++.+|...+- ..++||+|+
T Consensus 74 ~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi 153 (274)
T d1iy9a_ 74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM 153 (274)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred CCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEEE
Confidence 35679999999999999999987 4569999999999999999986432 1 1368999999998754 567899999
Q ss_pred EccchhhhCHh--hHHHHHHHHhcccccCcEEEEEe
Q 048309 142 SCEMMEAVGHE--YMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 142 ~~~~l~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
....-..-... --.++++.+.+.|+|||+++...
T Consensus 154 ~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~ 189 (274)
T d1iy9a_ 154 VDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQT 189 (274)
T ss_dssp ESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred EcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEec
Confidence 87532211111 13689999999999999999754
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.72 E-value=1.6e-08 Score=82.27 Aligned_cols=108 Identities=19% Similarity=0.339 Sum_probs=82.3
Q ss_pred HHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCC
Q 048309 58 HSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAK 135 (288)
Q Consensus 58 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~ 135 (288)
.+.+++.+...++.+|||.|||+|.++..+.+. ....++|+|+++..++. ..+..++++|........
T Consensus 8 ~~~m~~l~~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~----------~~~~~~~~~~~~~~~~~~ 77 (223)
T d2ih2a1 8 VDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDL----------PPWAEGILADFLLWEPGE 77 (223)
T ss_dssp HHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCC----------CTTEEEEESCGGGCCCSS
T ss_pred HHHHHHhcCCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhh----------cccceeeeeehhcccccc
Confidence 456777888888999999999999998888765 44679999999865432 235688999998877678
Q ss_pred CCCEEEEccchhhhCH---------------------------hhHHHHHHHHhcccccCcEEEEEe
Q 048309 136 KYDRIISCEMMEAVGH---------------------------EYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 136 ~fD~I~~~~~l~~~~~---------------------------~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
.||+|+++..+..... .-...++.++.+.|++||.+.+..
T Consensus 78 ~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~ 144 (223)
T d2ih2a1 78 AFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVV 144 (223)
T ss_dssp CEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEE
Confidence 9999999866432100 013467889999999999988754
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.70 E-value=1.6e-07 Score=79.00 Aligned_cols=90 Identities=14% Similarity=0.221 Sum_probs=75.7
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCC
Q 048309 56 RKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAK 135 (288)
Q Consensus 56 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~ 135 (288)
..++.+++.++..++..|||||+|+|.++..|++. +.+|++||+++.+++..++.+.......+++++.+|+...+.+
T Consensus 8 ~i~~kIv~~~~~~~~d~VlEIGPG~G~LT~~Ll~~-~~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~~~- 85 (278)
T d1zq9a1 8 LIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEK-AKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLP- 85 (278)
T ss_dssp HHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHH-SSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCC-
T ss_pred HHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHhc-CCcEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhhhh-
Confidence 45667888888889999999999999999999987 6799999999999999999887765556899999999987732
Q ss_pred CCCEEEEccchh
Q 048309 136 KYDRIISCEMME 147 (288)
Q Consensus 136 ~fD~I~~~~~l~ 147 (288)
.++.|+++-..+
T Consensus 86 ~~~~vV~NLPY~ 97 (278)
T d1zq9a1 86 FFDTCVANLPYQ 97 (278)
T ss_dssp CCSEEEEECCGG
T ss_pred hhhhhhcchHHH
Confidence 356788776543
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.70 E-value=7e-08 Score=82.90 Aligned_cols=119 Identities=9% Similarity=0.086 Sum_probs=94.6
Q ss_pred HHHHcCCCCCCEEEEECCcccHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CCCCC
Q 048309 61 LIEKARVSKEHEVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAKKY 137 (288)
Q Consensus 61 l~~~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~~f 137 (288)
....+.+++|.+|||+.||.|+=+..++.. ....++++|.++..++..++++++.|+ .++.+...|...++ ....|
T Consensus 108 ~~~~l~~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~-~~i~~~~~d~~~~~~~~~~f 186 (313)
T d1ixka_ 108 PPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGV-LNVILFHSSSLHIGELNVEF 186 (313)
T ss_dssp HHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTC-CSEEEESSCGGGGGGGCCCE
T ss_pred hhhcccCCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHh-hccccccccccccccccccc
Confidence 344567889999999999999988888775 456899999999999999999999998 57888888888776 56789
Q ss_pred CEEEEccchhhh-------------CHh-------hHHHHHHHHhcccccCcEEEEEeecCCC
Q 048309 138 DRIISCEMMEAV-------------GHE-------YMEEYFGCCESLLAKDGLLVLQFSSTPD 180 (288)
Q Consensus 138 D~I~~~~~l~~~-------------~~~-------~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 180 (288)
|.|+........ ..+ ...+++.++...|||||.++.++.+...
T Consensus 187 D~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl~~ 249 (313)
T d1ixka_ 187 DKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEP 249 (313)
T ss_dssp EEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCG
T ss_pred cEEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccCCh
Confidence 999986433221 111 2345788999999999999998877544
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.64 E-value=9.8e-08 Score=80.89 Aligned_cols=119 Identities=11% Similarity=0.097 Sum_probs=90.3
Q ss_pred HHHHcCCCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC--CCCCC
Q 048309 61 LIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP--KAKKY 137 (288)
Q Consensus 61 l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~--~~~~f 137 (288)
.+..+...++.+|||+.+|.|+=+..++.. ....|+++|+++.-++..+++++..|+. ++.....|..... ..+.|
T Consensus 94 ~~~~L~~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~-~~~~~~~~~~~~~~~~~~~f 172 (284)
T d1sqga2 94 CMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMK-ATVKQGDGRYPSQWCGEQQF 172 (284)
T ss_dssp HHHHHCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCC-CEEEECCTTCTHHHHTTCCE
T ss_pred cccccCccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhccccc-ceeeeccccccchhcccccc
Confidence 344567889999999999999999998876 4568999999999999999999999984 5555555544322 55789
Q ss_pred CEEEEccchhhh-------------CHh-------hHHHHHHHHhcccccCcEEEEEeecCCC
Q 048309 138 DRIISCEMMEAV-------------GHE-------YMEEYFGCCESLLAKDGLLVLQFSSTPD 180 (288)
Q Consensus 138 D~I~~~~~l~~~-------------~~~-------~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 180 (288)
|.|++....... .+. -..+++..+.+.|||||+++.++.+...
T Consensus 173 d~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~ 235 (284)
T d1sqga2 173 DRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLP 235 (284)
T ss_dssp EEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCG
T ss_pred cEEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecCch
Confidence 999986433211 111 1355788999999999999998887544
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=98.59 E-value=1.6e-07 Score=74.00 Aligned_cols=110 Identities=17% Similarity=0.197 Sum_probs=81.1
Q ss_pred HHHHHHHHcC-CCCCCEEEEECCcccHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-
Q 048309 57 KHSLLIEKAR-VSKEHEVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP- 132 (288)
Q Consensus 57 ~~~~l~~~~~-~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~- 132 (288)
++.++.++.+ ++++.+|||+||++|.++..+++. ....++++|+.+- ..+ .++.++++|+.+..
T Consensus 9 KL~EI~~k~~l~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~-----------~~i-~~~~~~~~d~~~~~~ 76 (180)
T d1ej0a_ 9 KLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM-----------DPI-VGVDFLQGDFRDELV 76 (180)
T ss_dssp HHHHHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC-----------CCC-TTEEEEESCTTSHHH
T ss_pred HHHHHHHHhCccCCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc-----------ccc-CCceEeecccccchh
Confidence 4555666655 468899999999999999998876 4468999998661 233 47899999997632
Q ss_pred --------CCCCCCEEEEccchhhhCH---------hhHHHHHHHHhcccccCcEEEEEeecC
Q 048309 133 --------KAKKYDRIISCEMMEAVGH---------EYMEEYFGCCESLLAKDGLLVLQFSST 178 (288)
Q Consensus 133 --------~~~~fD~I~~~~~l~~~~~---------~~~~~~l~~~~~~LkpgG~l~~~~~~~ 178 (288)
....+|+|+|..+....+. +-....+.-+.++|++||.+++-.+..
T Consensus 77 ~~~~~~~~~~~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~g 139 (180)
T d1ej0a_ 77 MKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQG 139 (180)
T ss_dssp HHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESS
T ss_pred hhhhhhhccCcceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEecC
Confidence 3568999999876533211 123446677789999999999977653
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.58 E-value=4.7e-07 Score=76.93 Aligned_cols=119 Identities=10% Similarity=0.015 Sum_probs=89.1
Q ss_pred HHHHcCCCCCCEEEEECCcccHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC----CC
Q 048309 61 LIEKARVSKEHEVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP----KA 134 (288)
Q Consensus 61 l~~~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~----~~ 134 (288)
.+..+...+|.+|||+++|.|+-+.+++.. ....++++|+++.-++..++++++.|+ .++.+...|...+. ..
T Consensus 86 ~~~~L~~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~-~~~~~~~~d~~~~~~~~~~~ 164 (293)
T d2b9ea1 86 PAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGV-SCCELAEEDFLAVSPSDPRY 164 (293)
T ss_dssp HHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTC-CSEEEEECCGGGSCTTCGGG
T ss_pred cccccCCCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCc-cceeeeehhhhhhccccccc
Confidence 334457789999999999999998888765 456899999999999999999999999 58999999998765 22
Q ss_pred CCCCEEEEccchhhh------C---------H-------hhHHHHHHHHhcccccCcEEEEEeecCCCc
Q 048309 135 KKYDRIISCEMMEAV------G---------H-------EYMEEYFGCCESLLAKDGLLVLQFSSTPDA 181 (288)
Q Consensus 135 ~~fD~I~~~~~l~~~------~---------~-------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 181 (288)
+.||.|+........ + . .....++..+. .|+|||.++-++.+....
T Consensus 165 ~~fD~VL~DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTCSl~~~ 232 (293)
T d2b9ea1 165 HEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTCSLCQE 232 (293)
T ss_dssp TTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEESCCCGG
T ss_pred ceeeEEeecCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeeccCChh
Confidence 679999986432211 0 0 01123455555 479999999888775543
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=98.47 E-value=7.7e-08 Score=79.96 Aligned_cols=73 Identities=15% Similarity=0.112 Sum_probs=62.7
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC
Q 048309 56 RKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP 132 (288)
Q Consensus 56 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~ 132 (288)
..+..+++.+.+.++..|||||||+|.++..|++. +.+|++||+++.+++..++..... ++++++.+|+.+++
T Consensus 8 ~~~~~Iv~~~~~~~~d~vlEIGpG~G~LT~~Ll~~-~~~v~aiEiD~~l~~~L~~~~~~~---~~~~ii~~D~l~~~ 80 (252)
T d1qyra_ 8 FVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGER-LDQLTVIELDRDLAARLQTHPFLG---PKLTIYQQDAMTFN 80 (252)
T ss_dssp HHHHHHHHHHCCCTTCCEEEECCTTTTTHHHHHTT-CSCEEEECCCHHHHHHHHTCTTTG---GGEEEECSCGGGCC
T ss_pred HHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHcc-CCceEEEEeccchhHHHHHHhhhc---cchhHHhhhhhhhc
Confidence 45567888888889999999999999999999986 679999999999999887754332 58999999999876
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=98.41 E-value=5.9e-07 Score=80.28 Aligned_cols=119 Identities=13% Similarity=0.142 Sum_probs=91.7
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc-c-------------CCEEEEEcCCHHHHHHHHHHHHHcCCC-Cce
Q 048309 57 KHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-T-------------GCNYTGITLSAEQMKYAEMKVNEAGLQ-DHI 121 (288)
Q Consensus 57 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~-------------~~~v~giD~s~~~~~~a~~~~~~~g~~-~~v 121 (288)
..+.+++.+.+.++.+|+|.+||+|.+...+.++ . ...+.|+|+++.+...|+.++.-.|.. .+.
T Consensus 150 Iv~~mv~ll~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~~~ 229 (425)
T d2okca1 150 LIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRS 229 (425)
T ss_dssp HHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCC
T ss_pred hhHhhheeccCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCccccc
Confidence 3456677777788899999999999999887664 1 135999999999999999988777763 245
Q ss_pred EEEEcccCCCCCCCCCCEEEEccchhhhC---------------HhhHHHHHHHHhcccccCcEEEEEe
Q 048309 122 RLYLCDYRQLPKAKKYDRIISCEMMEAVG---------------HEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 122 ~~~~~d~~~~~~~~~fD~I~~~~~l~~~~---------------~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
.+...|........+||+|+++..+.... ...-..++..+...|++||++.+..
T Consensus 230 ~i~~~d~l~~~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~ 298 (425)
T d2okca1 230 PIVCEDSLEKEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVL 298 (425)
T ss_dssp SEEECCTTTSCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred eeecCchhhhhcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEe
Confidence 67888888766678999999998773210 0123458999999999999988743
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=98.30 E-value=7.7e-07 Score=72.81 Aligned_cols=110 Identities=13% Similarity=0.125 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc-----cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEccc
Q 048309 54 QMRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-----TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDY 128 (288)
Q Consensus 54 ~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-----~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~ 128 (288)
....+..++..+. +.+|||||++.|..+..++.. ..++++|+|+++....... ...++++++++|.
T Consensus 68 d~~~~~eli~~~K---Pk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~------~~~~~I~~i~gDs 138 (232)
T d2bm8a1 68 TQAVYHDMLWELR---PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA------SDMENITLHQGDC 138 (232)
T ss_dssp HHHHHHHHHHHHC---CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG------GGCTTEEEEECCS
T ss_pred HHHHHHHHHHHhC---CCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhh------ccccceeeeeccc
Confidence 3456677787764 569999999999887766542 4579999999875432221 1125899999998
Q ss_pred CCCC-----CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEee
Q 048309 129 RQLP-----KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 129 ~~~~-----~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
.+.. ....+|.|+.... |........ + ....+|++||.+++.+.
T Consensus 139 ~~~~~~~~l~~~~~dlIfID~~--H~~~~v~~~-~-~~~~lLk~GG~iIveD~ 187 (232)
T d2bm8a1 139 SDLTTFEHLREMAHPLIFIDNA--HANTFNIMK-W-AVDHLLEEGDYFIIEDM 187 (232)
T ss_dssp SCSGGGGGGSSSCSSEEEEESS--CSSHHHHHH-H-HHHHTCCTTCEEEECSC
T ss_pred ccHHHHHHHHhcCCCEEEEcCC--cchHHHHHH-H-HHhcccCcCCEEEEEcC
Confidence 7643 3456898887654 332122333 3 35689999999999764
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.28 E-value=1.2e-06 Score=76.70 Aligned_cols=100 Identities=13% Similarity=0.027 Sum_probs=80.1
Q ss_pred CCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCC--------------ceEEEEcccCCCC-
Q 048309 69 KEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQD--------------HIRLYLCDYRQLP- 132 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~--------------~v~~~~~d~~~~~- 132 (288)
.+.+|||..||+|..++.++.. ...+|+++|+|+.+++.++++++.+++.. ++.+...|+..+.
T Consensus 45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~ 124 (375)
T d2dula1 45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 124 (375)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhH
Confidence 4679999999999999988776 55689999999999999999999887632 3566677765544
Q ss_pred -CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 133 -KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 133 -~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
....||+|.... + .....++..+.+.++.||.+.++
T Consensus 125 ~~~~~fDvIDiDP----f--Gs~~pfldsAi~a~~~~Gll~vT 161 (375)
T d2dula1 125 ERHRYFHFIDLDP----F--GSPMEFLDTALRSAKRRGILGVT 161 (375)
T ss_dssp HSTTCEEEEEECC----S--SCCHHHHHHHHHHEEEEEEEEEE
T ss_pred hhcCcCCcccCCC----C--CCcHHHHHHHHHHhccCCEEEEE
Confidence 456799999864 2 23466888888999999999984
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=98.18 E-value=1.3e-06 Score=71.23 Aligned_cols=123 Identities=14% Similarity=0.163 Sum_probs=74.7
Q ss_pred HHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCC
Q 048309 55 MRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPK 133 (288)
Q Consensus 55 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~ 133 (288)
..++..+.++..+.++.+|+|+|||.|.++..++.. ....+.|+|+--...+. ....+..+. +-+++...+-....+
T Consensus 52 ~~Kl~~~~~~~~~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e~-P~~~~~~~~-ni~~~~~~~dv~~l~ 129 (257)
T d2p41a1 52 SAKLRWFVERNLVTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEE-PIPMSTYGW-NLVRLQSGVDVFFIP 129 (257)
T ss_dssp HHHHHHHHHTTSSCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCC-CCCCCSTTG-GGEEEECSCCTTTSC
T ss_pred HHHHHHHHHhcCccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCccccC-Ccccccccc-ccccchhhhhHHhcC
Confidence 346677777777888899999999999999999876 33577788773211000 000000111 113333333222225
Q ss_pred CCCCCEEEEccchhhhC----HhhHHHHHHHHhcccccCcEEEEEeecCC
Q 048309 134 AKKYDRIISCEMMEAVG----HEYMEEYFGCCESLLAKDGLLVLQFSSTP 179 (288)
Q Consensus 134 ~~~fD~I~~~~~l~~~~----~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 179 (288)
+..+|+|+|.-+-..-. ......+++-+.++|+|||-|++-.+...
T Consensus 130 ~~~~D~vlcDm~ess~~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl~py 179 (257)
T d2p41a1 130 PERCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNPY 179 (257)
T ss_dssp CCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCCC
T ss_pred CCcCCEEEeeCCCCCCCchhhhhhHHHHHHHHHHHcccCCEEEEEECCCC
Confidence 68899999975422110 01223567777899999999998766543
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.09 E-value=3.5e-06 Score=65.24 Aligned_cols=103 Identities=15% Similarity=0.135 Sum_probs=71.4
Q ss_pred HHHHHcCCCCCCEEEEECCc-ccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEc-ccCCCC--CCC
Q 048309 60 LLIEKARVSKEHEVLEIGCG-WGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLC-DYRQLP--KAK 135 (288)
Q Consensus 60 ~l~~~~~~~~~~~vLDiGcG-~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~-d~~~~~--~~~ 135 (288)
+.+...+.+++.+||-+|+| .|..+..+++..+++|+++|.+++.++.+++. |.. .++.. +-.+.. ..+
T Consensus 18 ~al~~~~~~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~l----Ga~---~~i~~~~~~~~~~~~~~ 90 (168)
T d1piwa2 18 SPLVRNGCGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKM----GAD---HYIATLEEGDWGEKYFD 90 (168)
T ss_dssp HHHHHTTCSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHH----TCS---EEEEGGGTSCHHHHSCS
T ss_pred HHHHHhCcCCCCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhcc----CCc---EEeeccchHHHHHhhhc
Confidence 34556788999999999999 48889999888889999999999988888764 431 33322 211211 456
Q ss_pred CCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 136 KYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 136 ~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
.+|+++..-.-.+- ..+..+.+.|+|+|++++..
T Consensus 91 ~~d~vi~~~~~~~~------~~~~~~~~~l~~~G~iv~~G 124 (168)
T d1piwa2 91 TFDLIVVCASSLTD------IDFNIMPKAMKVGGRIVSIS 124 (168)
T ss_dssp CEEEEEECCSCSTT------CCTTTGGGGEEEEEEEEECC
T ss_pred ccceEEEEecCCcc------chHHHHHHHhhccceEEEec
Confidence 89988864322211 11344678999999998854
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=98.04 E-value=2.3e-05 Score=60.39 Aligned_cols=102 Identities=19% Similarity=0.170 Sum_probs=72.1
Q ss_pred HHHHHcCCCCCCEEEEECCcc-cHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCC-------
Q 048309 60 LLIEKARVSKEHEVLEIGCGW-GTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQL------- 131 (288)
Q Consensus 60 ~l~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~------- 131 (288)
+.++..+++++.+||-+|||. |..+..+++..+++|+++|.+++.++.+++. |. ...+...+....
T Consensus 17 ~a~~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~----ga--~~~~~~~~~~~~~~~~~~~ 90 (170)
T d1e3ja2 17 HACRRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNC----GA--DVTLVVDPAKEEESSIIER 90 (170)
T ss_dssp HHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT----TC--SEEEECCTTTSCHHHHHHH
T ss_pred HHHHHhCCCCCCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHHc----CC--cEEEeccccccccchhhhh
Confidence 345677889999999999995 8888888888888999999999999888764 32 122222211111
Q ss_pred -C--CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 132 -P--KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 132 -~--~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
. ..+.+|+|+-.-. -...++.+.+.++|+|++++..
T Consensus 91 ~~~~~g~g~D~vid~~g--------~~~~~~~a~~~~~~~G~iv~~G 129 (170)
T d1e3ja2 91 IRSAIGDLPNVTIDCSG--------NEKCITIGINITRTGGTLMLVG 129 (170)
T ss_dssp HHHHSSSCCSEEEECSC--------CHHHHHHHHHHSCTTCEEEECS
T ss_pred hhcccccCCceeeecCC--------ChHHHHHHHHHHhcCCceEEEe
Confidence 1 2467999986421 1345666778999999999854
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=98.04 E-value=7.7e-06 Score=74.82 Aligned_cols=119 Identities=13% Similarity=0.072 Sum_probs=84.4
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc----c---------------CCEEEEEcCCHHHHHHHHHHHHHcCC
Q 048309 57 KHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ----T---------------GCNYTGITLSAEQMKYAEMKVNEAGL 117 (288)
Q Consensus 57 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~----~---------------~~~v~giD~s~~~~~~a~~~~~~~g~ 117 (288)
.+..+++.+.+.++.+|+|..||+|.+...+.+. . ...+.|+|+++.+...|+.++--.+.
T Consensus 152 Iv~~mv~ll~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~~ 231 (524)
T d2ar0a1 152 LIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDI 231 (524)
T ss_dssp HHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTC
T ss_pred hhHhhhhcccCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhhcc
Confidence 3456677778888899999999999998776553 0 12589999999999999988876665
Q ss_pred CCc----eEEEEcccCCCC--CCCCCCEEEEccchhhhCH------------hhHHHHHHHHhcccccCcEEEEEe
Q 048309 118 QDH----IRLYLCDYRQLP--KAKKYDRIISCEMMEAVGH------------EYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 118 ~~~----v~~~~~d~~~~~--~~~~fD~I~~~~~l~~~~~------------~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
..+ ..+...+....+ ...+||+|+++..+.--.. ..-..++..+.+.|++||++.+..
T Consensus 232 ~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~aiIl 307 (524)
T d2ar0a1 232 EGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVV 307 (524)
T ss_dssp CCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcEEEEE
Confidence 322 133444444322 4468999999987632100 112358999999999999988844
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=97.97 E-value=4e-06 Score=68.90 Aligned_cols=90 Identities=10% Similarity=0.108 Sum_probs=70.0
Q ss_pred HHHHHHcCCCCC--CEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCC--------CCceEEEEccc
Q 048309 59 SLLIEKARVSKE--HEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGL--------QDHIRLYLCDY 128 (288)
Q Consensus 59 ~~l~~~~~~~~~--~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~--------~~~v~~~~~d~ 128 (288)
+.+.+.++++++ .+|||.-||.|..+..+|.. +++|+++|-++......+..++.... ..+++++++|.
T Consensus 76 ~~l~kA~gl~~~~~~~VlD~TaGlG~Da~vlA~~-G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds 154 (250)
T d2oyra1 76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV-GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASS 154 (250)
T ss_dssp SHHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHH-TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCH
T ss_pred hHHHHHhcCCCCCCCEEEECCCcccHHHHHHHhC-CCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcH
Confidence 456777776655 38999999999999999985 89999999999887776665543211 13799999998
Q ss_pred CCCC--CCCCCCEEEEccchhhh
Q 048309 129 RQLP--KAKKYDRIISCEMMEAV 149 (288)
Q Consensus 129 ~~~~--~~~~fD~I~~~~~l~~~ 149 (288)
.++. ...+||+|+...++.+-
T Consensus 155 ~~~L~~~~~~~DvIYlDPMFp~~ 177 (250)
T d2oyra1 155 LTALTDITPRPQVVYLDPMFPHK 177 (250)
T ss_dssp HHHSTTCSSCCSEEEECCCCCCC
T ss_pred HHHHhccCCCCCEEEECCCCccc
Confidence 7754 45789999998887654
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.94 E-value=3.3e-05 Score=59.26 Aligned_cols=98 Identities=14% Similarity=0.171 Sum_probs=67.7
Q ss_pred HHHHcCCCCCCEEEEECCcc-cHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC------C
Q 048309 61 LIEKARVSKEHEVLEIGCGW-GTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP------K 133 (288)
Q Consensus 61 l~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~------~ 133 (288)
.++..+++++.+|+=+|||. |..+..+++..+++|+++|.+++.++.+++. |. ..++..+-.+.. .
T Consensus 19 al~~~~~~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~~----Ga---~~~i~~~~~~~~~~~~~~~ 91 (166)
T d1llua2 19 GLKQTNARPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARKL----GA---SLTVNARQEDPVEAIQRDI 91 (166)
T ss_dssp HHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT----TC---SEEEETTTSCHHHHHHHHH
T ss_pred HHHHhCCCCCCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhhcc----Cc---cccccccchhHHHHHHHhh
Confidence 34667888999999999986 8888888888789999999999998877653 43 233433222211 1
Q ss_pred CCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 134 AKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 134 ~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
.+.+|.|++... ...++...+.|+|+|++++.
T Consensus 92 ~g~~~~i~~~~~---------~~~~~~~~~~l~~~G~iv~~ 123 (166)
T d1llua2 92 GGAHGVLVTAVS---------NSAFGQAIGMARRGGTIALV 123 (166)
T ss_dssp SSEEEEEECCSC---------HHHHHHHHTTEEEEEEEEEC
T ss_pred cCCccccccccc---------chHHHHHHHHhcCCcEEEEE
Confidence 233444444322 23466677999999999874
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=97.86 E-value=1.3e-05 Score=62.80 Aligned_cols=99 Identities=20% Similarity=0.176 Sum_probs=68.0
Q ss_pred HHcCCCCCCEEEEECCcc-cHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCC----------
Q 048309 63 EKARVSKEHEVLEIGCGW-GTFAIEVVRQTGC-NYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQ---------- 130 (288)
Q Consensus 63 ~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~---------- 130 (288)
+...+++|.+||-+|+|. |..+..+++..++ +|+++|.+++.++.+++. |-. .++.-.-.+
T Consensus 22 ~~~~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~l----Ga~---~vi~~~~~~~~~~~~~i~~ 94 (182)
T d1vj0a2 22 EYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEI----GAD---LTLNRRETSVEERRKAIMD 94 (182)
T ss_dssp TCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHT----TCS---EEEETTTSCHHHHHHHHHH
T ss_pred HHhCCCCCCEEEEECCCccchhheecccccccccccccccccccccccccc----cce---EEEeccccchHHHHHHHHH
Confidence 344678999999999986 8899999988676 899999999999888654 321 222221111
Q ss_pred CCCCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEee
Q 048309 131 LPKAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 131 ~~~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
......+|+|+-.-.- ...++...+.|++||++++.-.
T Consensus 95 ~~~~~g~Dvvid~vG~--------~~~~~~a~~~l~~~G~iv~~G~ 132 (182)
T d1vj0a2 95 ITHGRGADFILEATGD--------SRALLEGSELLRRGGFYSVAGV 132 (182)
T ss_dssp HTTTSCEEEEEECSSC--------TTHHHHHHHHEEEEEEEEECCC
T ss_pred hhCCCCceEEeecCCc--------hhHHHHHHHHhcCCCEEEEEee
Confidence 1124569998854211 2345666799999999987543
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.82 E-value=6.3e-05 Score=57.99 Aligned_cols=102 Identities=22% Similarity=0.176 Sum_probs=72.3
Q ss_pred HHHHHcCCCCCCEEEEECCcc-cHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-----
Q 048309 60 LLIEKARVSKEHEVLEIGCGW-GTFAIEVVRQTGC-NYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP----- 132 (288)
Q Consensus 60 ~l~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~----- 132 (288)
+.+++.+++++.+|+=+|||. |..+..+++..++ +|+++|.++..++.|++. |.. .++..+-.+..
T Consensus 17 ~a~~~~~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~----Ga~---~~~~~~~~~~~~~~~~ 89 (171)
T d1pl8a2 17 HACRRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEI----GAD---LVLQISKESPQEIARK 89 (171)
T ss_dssp HHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----TCS---EEEECSSCCHHHHHHH
T ss_pred HHHHHhCCCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHh----CCc---cccccccccccccccc
Confidence 456677889999999999997 7777888877566 899999999999888754 331 23333222211
Q ss_pred ----CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEee
Q 048309 133 ----KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 133 ----~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
....+|+|+-.-. -...++...+.+++||++++...
T Consensus 90 ~~~~~g~g~Dvvid~~G--------~~~~~~~a~~~~~~gG~iv~~G~ 129 (171)
T d1pl8a2 90 VEGQLGCKPEVTIECTG--------AEASIQAGIYATRSGGTLVLVGL 129 (171)
T ss_dssp HHHHHTSCCSEEEECSC--------CHHHHHHHHHHSCTTCEEEECSC
T ss_pred ccccCCCCceEEEeccC--------CchhHHHHHHHhcCCCEEEEEec
Confidence 2357999886422 13467777899999999998543
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=97.79 E-value=2e-05 Score=60.72 Aligned_cols=101 Identities=18% Similarity=0.194 Sum_probs=70.2
Q ss_pred HHHHHcCCCCCCEEEEECCcc-cHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC--CCCC
Q 048309 60 LLIEKARVSKEHEVLEIGCGW-GTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP--KAKK 136 (288)
Q Consensus 60 ~l~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~--~~~~ 136 (288)
+.++..++++|.+||=+|||. |.++.++++..+++++++|.+++..+.+++. |. -.++...-.+.. ..+.
T Consensus 21 ~al~~~~~~~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~l----Ga---d~~i~~~~~~~~~~~~~~ 93 (168)
T d1uufa2 21 SPLRHWQAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKAL----GA---DEVVNSRNADEMAAHLKS 93 (168)
T ss_dssp HHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHH----TC---SEEEETTCHHHHHTTTTC
T ss_pred HHHHHhCCCCCCEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHhcc----CC---cEEEECchhhHHHHhcCC
Confidence 344677899999999999986 8899999988888999999999887777654 43 233322211111 3467
Q ss_pred CCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 137 YDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 137 fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
+|+++-.-.-. ..++...+.++++|++++..
T Consensus 94 ~D~vid~~g~~--------~~~~~~~~~l~~~G~iv~~G 124 (168)
T d1uufa2 94 FDFILNTVAAP--------HNLDDFTTLLKRDGTMTLVG 124 (168)
T ss_dssp EEEEEECCSSC--------CCHHHHHTTEEEEEEEEECC
T ss_pred Cceeeeeeecc--------hhHHHHHHHHhcCCEEEEec
Confidence 99888643211 22445568999999999853
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=97.74 E-value=7.4e-05 Score=57.82 Aligned_cols=104 Identities=11% Similarity=0.066 Sum_probs=72.7
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcc-cHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC--
Q 048309 57 KHSLLIEKARVSKEHEVLEIGCGW-GTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-- 132 (288)
Q Consensus 57 ~~~~l~~~~~~~~~~~vLDiGcG~-G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-- 132 (288)
.+..+++..+++++.+||-+|||. |..+..+++. ....|+++|.++..++.+++. |. .+++.-+-.+..
T Consensus 16 a~~a~~~~~~~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~----Ga---~~~i~~~~~~~~~~ 88 (174)
T d1f8fa2 16 GAGACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL----GA---THVINSKTQDPVAA 88 (174)
T ss_dssp HHHHHHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH----TC---SEEEETTTSCHHHH
T ss_pred HHHHHHHhhCCCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHc----CC---eEEEeCCCcCHHHH
Confidence 345567777899999999999986 7777888876 444678899999988888764 33 244443333221
Q ss_pred ----CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 133 ----KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 133 ----~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
.++.+|+|+-.-. -...++.+.+.++|+|++++.-
T Consensus 89 i~~~t~gg~D~vid~~G--------~~~~~~~~~~~~~~~G~i~~~G 127 (174)
T d1f8fa2 89 IKEITDGGVNFALESTG--------SPEILKQGVDALGILGKIAVVG 127 (174)
T ss_dssp HHHHTTSCEEEEEECSC--------CHHHHHHHHHTEEEEEEEEECC
T ss_pred HHHHcCCCCcEEEEcCC--------cHHHHHHHHhcccCceEEEEEe
Confidence 2467999885421 1345667789999999998743
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=97.71 E-value=4.3e-05 Score=59.29 Aligned_cols=101 Identities=18% Similarity=0.191 Sum_probs=71.1
Q ss_pred HHHHcCCCCCCEEEEECCcc-cHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCC-------
Q 048309 61 LIEKARVSKEHEVLEIGCGW-GTFAIEVVRQTGC-NYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQL------- 131 (288)
Q Consensus 61 l~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~------- 131 (288)
.++..+++++.+||-+|||. |..+..+++..++ +|+++|.+++..+.+++. |. ..++.-.-.++
T Consensus 19 a~~~a~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~l----Ga---~~~i~~~~~~~~~~v~~~ 91 (174)
T d1jqba2 19 GAELADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFY----GA---TDILNYKNGHIEDQVMKL 91 (174)
T ss_dssp HHHHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHH----TC---SEEECGGGSCHHHHHHHH
T ss_pred HHHHhCCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhh----Cc---cccccccchhHHHHHHHH
Confidence 45777899999999999997 8999999988664 799999999988888754 32 23332222221
Q ss_pred CCCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEee
Q 048309 132 PKAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 132 ~~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
.....+|+|+-.-.- ...++.+.+.++|+|++++.-.
T Consensus 92 t~g~G~D~vid~~g~--------~~~~~~a~~~~~~~G~iv~~G~ 128 (174)
T d1jqba2 92 TNGKGVDRVIMAGGG--------SETLSQAVKMVKPGGIISNINY 128 (174)
T ss_dssp TTTSCEEEEEECSSC--------TTHHHHHHHHEEEEEEEEECCC
T ss_pred hhccCcceEEEccCC--------HHHHHHHHHHHhcCCEEEEEee
Confidence 123569998764221 2345666689999999998543
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.64 E-value=0.00017 Score=55.60 Aligned_cols=104 Identities=23% Similarity=0.212 Sum_probs=72.2
Q ss_pred HHHHHHHHHHcCCCCCCEEEEECC-c-ccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCC-
Q 048309 55 MRKHSLLIEKARVSKEHEVLEIGC-G-WGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQL- 131 (288)
Q Consensus 55 ~~~~~~l~~~~~~~~~~~vLDiGc-G-~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~- 131 (288)
.-.+..+.+..+++++.+||-.|+ | .|..+..+++..+++|++++.+++..+.+++ .|.. .++.-.-.++
T Consensus 14 ~TA~~al~~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~----~Ga~---~vi~~~~~~~~ 86 (174)
T d1yb5a2 14 FTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQ----NGAH---EVFNHREVNYI 86 (174)
T ss_dssp HHHHHHHHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----TTCS---EEEETTSTTHH
T ss_pred HHHHHHHHHHhCCCCCCEEEEEeccccccccccccccccCcccccccccccccccccc----cCcc---cccccccccHH
Confidence 334445556667889999999996 4 5889999998888999999989887777654 3542 3332211111
Q ss_pred ------CCCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 132 ------PKAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 132 ------~~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
.....+|+|+.... ...++...+.|+|+|+++..
T Consensus 87 ~~i~~~t~~~g~d~v~d~~g---------~~~~~~~~~~l~~~G~iv~~ 126 (174)
T d1yb5a2 87 DKIKKYVGEKGIDIIIEMLA---------NVNLSKDLSLLSHGGRVIVV 126 (174)
T ss_dssp HHHHHHHCTTCEEEEEESCH---------HHHHHHHHHHEEEEEEEEEC
T ss_pred HHhhhhhccCCceEEeeccc---------HHHHHHHHhccCCCCEEEEE
Confidence 13567999987421 23567777899999999874
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=97.61 E-value=0.0001 Score=58.15 Aligned_cols=109 Identities=17% Similarity=0.045 Sum_probs=73.4
Q ss_pred HHHHcCCCCCCEEEEECCcc-cHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCC-------
Q 048309 61 LIEKARVSKEHEVLEIGCGW-GTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQL------- 131 (288)
Q Consensus 61 l~~~~~~~~~~~vLDiGcG~-G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~------- 131 (288)
.++..++++|.+||-+|||. |..+..+++. ...+|+++|.+++.++.|++. |. ..++...-.++
T Consensus 17 a~~~a~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~----Ga---~~~~~~~~~~~~~~i~~~ 89 (195)
T d1kola2 17 GAVTAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ----GF---EIADLSLDTPLHEQIAAL 89 (195)
T ss_dssp HHHHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----TC---EEEETTSSSCHHHHHHHH
T ss_pred HHHHhCCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhc----cc---cEEEeCCCcCHHHHHHHH
Confidence 35678899999999999998 7777787776 445899999999999888765 32 12221111111
Q ss_pred CCCCCCCEEEEccchh-------hhCHhhHHHHHHHHhcccccCcEEEEEee
Q 048309 132 PKAKKYDRIISCEMME-------AVGHEYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 132 ~~~~~fD~I~~~~~l~-------~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
.....+|+++-.-... .+......+.++.+.+.++|||++++.-.
T Consensus 90 t~g~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G~ 141 (195)
T d1kola2 90 LGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGL 141 (195)
T ss_dssp HSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSC
T ss_pred hCCCCcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEeee
Confidence 1345789988543211 11111235678899999999999988543
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=97.61 E-value=0.00023 Score=54.51 Aligned_cols=101 Identities=22% Similarity=0.334 Sum_probs=70.4
Q ss_pred HHHHHcCCCCCCEEEEECC-c-ccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC----
Q 048309 60 LLIEKARVSKEHEVLEIGC-G-WGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP---- 132 (288)
Q Consensus 60 ~l~~~~~~~~~~~vLDiGc-G-~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~---- 132 (288)
+.++..+++++.+||=+|| | .|..+..+++. ....|+++|.+++.++.+++. |. -.++..+-.+..
T Consensus 18 ~al~~~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~----Ga---~~~i~~~~~~~~~~~~ 90 (170)
T d1jvba2 18 RAVRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRA----GA---DYVINASMQDPLAEIR 90 (170)
T ss_dssp HHHHHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHH----TC---SEEEETTTSCHHHHHH
T ss_pred HHHHHhCCCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHc----CC---ceeeccCCcCHHHHHH
Confidence 3456778899999999996 4 47777777776 446999999999988888764 32 133333333221
Q ss_pred ---CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 133 ---KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 133 ---~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
.++.+|+|+.... -...++.+.+.++|||++++.-
T Consensus 91 ~~~~~~~~d~vid~~g--------~~~~~~~a~~~l~~~G~iv~~G 128 (170)
T d1jvba2 91 RITESKGVDAVIDLNN--------SEKTLSVYPKALAKQGKYVMVG 128 (170)
T ss_dssp HHTTTSCEEEEEESCC--------CHHHHTTGGGGEEEEEEEEECC
T ss_pred HHhhcccchhhhcccc--------cchHHHhhhhhcccCCEEEEec
Confidence 3467999887532 1344566779999999998754
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.53 E-value=0.00027 Score=53.86 Aligned_cols=99 Identities=14% Similarity=0.148 Sum_probs=65.5
Q ss_pred HHHHcCCCCCCEEEEECCcc-cHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC------C
Q 048309 61 LIEKARVSKEHEVLEIGCGW-GTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP------K 133 (288)
Q Consensus 61 l~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~------~ 133 (288)
.+...+++++.+||=.|||+ |..+..+++..+++|+++|.+++.++.+++. |.. .++.-.-.+.. .
T Consensus 19 al~~~~~~~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~~----Ga~---~~~~~~~~~~~~~~~~~~ 91 (168)
T d1rjwa2 19 ALKVTGAKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKEL----GAD---LVVNPLKEDAAKFMKEKV 91 (168)
T ss_dssp HHHHHTCCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHT----TCS---EEECTTTSCHHHHHHHHH
T ss_pred HHHHhCCCCCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhhc----Ccc---eecccccchhhhhccccc
Confidence 45567788999999999987 7778888887788999999999988877653 431 22211111111 2
Q ss_pred CCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 134 AKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 134 ~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
.+..|+|++.. . ...+....+.|+|+|.+++..
T Consensus 92 ~~~~~~v~~~~-----~----~~~~~~a~~~l~~~G~i~~~g 124 (168)
T d1rjwa2 92 GGVHAAVVTAV-----S----KPAFQSAYNSIRRGGACVLVG 124 (168)
T ss_dssp SSEEEEEESSC-----C----HHHHHHHHHHEEEEEEEEECC
T ss_pred CCCceEEeecC-----C----HHHHHHHHHHhccCCceEecc
Confidence 23344443321 1 345667778999999998854
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=97.47 E-value=0.00033 Score=54.05 Aligned_cols=104 Identities=16% Similarity=0.108 Sum_probs=73.3
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcc-cHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCC-C--
Q 048309 57 KHSLLIEKARVSKEHEVLEIGCGW-GTFAIEVVRQTGC-NYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQ-L-- 131 (288)
Q Consensus 57 ~~~~l~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~-~-- 131 (288)
.+..+++..++++|.+||=+|||. |..+..+++..++ .|+.+|.+++..+.+++. |. ..++...-.+ .
T Consensus 16 ~~~a~~~~a~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~----Ga---~~~i~~~~~~~~~~ 88 (174)
T d1e3ia2 16 GYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKAL----GA---TDCLNPRELDKPVQ 88 (174)
T ss_dssp HHHHHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT----TC---SEEECGGGCSSCHH
T ss_pred HHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHh----CC---CcccCCccchhhhh
Confidence 344556677889999999999998 8899999988554 799999999988777664 43 2333322111 1
Q ss_pred --C---CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccC-cEEEEEe
Q 048309 132 --P---KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKD-GLLVLQF 175 (288)
Q Consensus 132 --~---~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~ 175 (288)
. ..+.+|+++-.-. -...+....+.+++| |++++.-
T Consensus 89 ~~~~~~~~~G~d~vie~~G--------~~~~~~~a~~~~~~g~G~~v~vG 130 (174)
T d1e3ia2 89 DVITELTAGGVDYSLDCAG--------TAQTLKAAVDCTVLGWGSCTVVG 130 (174)
T ss_dssp HHHHHHHTSCBSEEEESSC--------CHHHHHHHHHTBCTTTCEEEECC
T ss_pred hhHhhhhcCCCcEEEEecc--------cchHHHHHHHHhhcCCeEEEecC
Confidence 0 3467999986421 245677788999996 9998844
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=97.42 E-value=0.00063 Score=52.16 Aligned_cols=95 Identities=16% Similarity=0.190 Sum_probs=65.6
Q ss_pred CCCCCCEEEEECCcc-cHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC------CCCCC
Q 048309 66 RVSKEHEVLEIGCGW-GTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP------KAKKY 137 (288)
Q Consensus 66 ~~~~~~~vLDiGcG~-G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~------~~~~f 137 (288)
..+++.+||-+|+|. |..+..+++. ....|+++|.+++.++.+++. |. ..++..+-.... ....+
T Consensus 29 ~~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~----ga---~~~i~~~~~~~~~~~~~~~~~g~ 101 (172)
T d1h2ba2 29 TLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERL----GA---DHVVDARRDPVKQVMELTRGRGV 101 (172)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHT----TC---SEEEETTSCHHHHHHHHTTTCCE
T ss_pred ccCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhc----cc---ceeecCcccHHHHHHHhhCCCCc
Confidence 367899999999997 7777788776 456899999999888877754 32 234433221111 33568
Q ss_pred CEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 138 DRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 138 D~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
|+|+-.-. -...++...+.|++||++++.-
T Consensus 102 d~vid~~g--------~~~~~~~a~~~l~~~G~iv~~G 131 (172)
T d1h2ba2 102 NVAMDFVG--------SQATVDYTPYLLGRMGRLIIVG 131 (172)
T ss_dssp EEEEESSC--------CHHHHHHGGGGEEEEEEEEECC
T ss_pred eEEEEecC--------cchHHHHHHHHHhCCCEEEEEe
Confidence 98886422 1345677789999999999854
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.41 E-value=0.00018 Score=61.33 Aligned_cols=71 Identities=14% Similarity=0.172 Sum_probs=56.1
Q ss_pred HHHHHHHHcCCC------CCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccC
Q 048309 57 KHSLLIEKARVS------KEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYR 129 (288)
Q Consensus 57 ~~~~l~~~~~~~------~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~ 129 (288)
.++.+++.+++. .+..|||||.|.|.++..+... ...+++++|+++...+..++.+.. ++++++.+|+.
T Consensus 25 i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~~----~~~~ii~~D~l 100 (322)
T d1i4wa_ 25 VYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEG----SPLQILKRDPY 100 (322)
T ss_dssp HHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTT----SSCEEECSCTT
T ss_pred HHHHHHHHhcCCccccccCCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhccC----CCcEEEeCchh
Confidence 455666665543 4668999999999999999876 235899999999999998887642 47899999987
Q ss_pred CC
Q 048309 130 QL 131 (288)
Q Consensus 130 ~~ 131 (288)
.+
T Consensus 101 ~~ 102 (322)
T d1i4wa_ 101 DW 102 (322)
T ss_dssp CH
T ss_pred hc
Confidence 53
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=97.18 E-value=0.0016 Score=50.02 Aligned_cols=106 Identities=15% Similarity=0.077 Sum_probs=68.7
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcc-cHHHHHHHHccC-CEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCC---
Q 048309 57 KHSLLIEKARVSKEHEVLEIGCGW-GTFAIEVVRQTG-CNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQL--- 131 (288)
Q Consensus 57 ~~~~l~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~-~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~--- 131 (288)
.+..+++..++++|.+||=+|||. |..+..+++..+ .+|+++|.+++.++.+++. |- ..++.-.-.+.
T Consensus 15 a~~a~~~~a~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~l----Ga---~~~i~~~~~d~~~~ 87 (174)
T d1p0fa2 15 GYGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIEL----GA---TECLNPKDYDKPIY 87 (174)
T ss_dssp HHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHT----TC---SEEECGGGCSSCHH
T ss_pred HHHHHHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHc----CC---cEEEcCCCchhHHH
Confidence 344556677899999999999997 667777777644 5899999999999888764 43 23333221111
Q ss_pred -----CCCCCCCEEEEccchhhhCHhhHHHHHHHHhccc-ccCcEEEEEeec
Q 048309 132 -----PKAKKYDRIISCEMMEAVGHEYMEEYFGCCESLL-AKDGLLVLQFSS 177 (288)
Q Consensus 132 -----~~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~L-kpgG~l~~~~~~ 177 (288)
..++.+|+++-.-.- ...+......+ +++|.+++.-..
T Consensus 88 ~~~~~~~~~G~d~vid~~g~--------~~~~~~~~~~~~~~~G~~v~vG~~ 131 (174)
T d1p0fa2 88 EVICEKTNGGVDYAVECAGR--------IETMMNALQSTYCGSGVTVVLGLA 131 (174)
T ss_dssp HHHHHHTTSCBSEEEECSCC--------HHHHHHHHHTBCTTTCEEEECCCC
T ss_pred HHHHHhcCCCCcEEEEcCCC--------chHHHHHHHHHHHhcCceEEEEEe
Confidence 034679998864221 23344444555 556988875543
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=97.16 E-value=0.0052 Score=52.51 Aligned_cols=95 Identities=12% Similarity=0.144 Sum_probs=62.2
Q ss_pred EEcccCCCC-CCCCCCEEEEccchhhhCH-------------------------------hhHHHHHHHHhcccccCcEE
Q 048309 124 YLCDYRQLP-KAKKYDRIISCEMMEAVGH-------------------------------EYMEEYFGCCESLLAKDGLL 171 (288)
Q Consensus 124 ~~~d~~~~~-~~~~fD~I~~~~~l~~~~~-------------------------------~~~~~~l~~~~~~LkpgG~l 171 (288)
+.+.+-.-- |.++.|+++|..++|+++. .|...+|+.=.+-|+|||++
T Consensus 126 vpGSFY~rLfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~m 205 (359)
T d1m6ex_ 126 VPGSFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRM 205 (359)
T ss_dssp EESCSSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEE
T ss_pred cCCchhhhcCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEE
Confidence 344444423 7789999999999998732 35566888888999999999
Q ss_pred EEEeecCCCcccccccCc--------------------hhhHhhhccCCCCCCCHHHHHHHHHHcCCh
Q 048309 172 VLQFSSTPDARYNEYRLS--------------------SDFIKEYIFPGGCLPSLSRITSAMAAASSL 219 (288)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~--------------------~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~ 219 (288)
++...+.++......... ..-+..+..| -+.|+.+++.+.+++.+.|
T Consensus 206 vl~~~gr~~~~~~~~~~~~~~~~l~~al~dmv~eGlI~eek~dsfn~P-~Y~ps~eEv~~~ie~~gsF 272 (359)
T d1m6ex_ 206 VLTILGRRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIP-QYTPSPTEVEAEILKEGSF 272 (359)
T ss_dssp EEEEEECSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCC-CBCCCSHHHHHHHHHTTTB
T ss_pred EEEEeccCCCCCCCCccchHHHHHHHHHHHHHHcCCCCHHHHHhccCc-cccCCHHHHHHHhccCCCe
Confidence 998887665432211000 0111223344 4568999999888887554
|
| >d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase AviRa domain: rRNA methyltransferase AviRa species: Streptomyces viridochromogenes [TaxId: 1938]
Probab=97.09 E-value=0.00095 Score=54.32 Aligned_cols=114 Identities=10% Similarity=0.025 Sum_probs=84.0
Q ss_pred HHHHcCCCCCCEEEEECCcccHHHHHHHHc-----cC------------------------------------CEEEEEc
Q 048309 61 LIEKARVSKEHEVLEIGCGWGTFAIEVVRQ-----TG------------------------------------CNYTGIT 99 (288)
Q Consensus 61 l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-----~~------------------------------------~~v~giD 99 (288)
.+....-..+..++|--||+|++.+..+.. ++ ..+.|.|
T Consensus 42 al~l~~w~~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D 121 (249)
T d1o9ga_ 42 ALARLPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKP 121 (249)
T ss_dssp HHHTSSCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCH
T ss_pred HhhhhcCCCCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccc
Confidence 333344455667999999999998876551 11 2467999
Q ss_pred CCHHHHHHH---HHHHHHcCCCCceEEEEcccCCCC------CCCCCCEEEEccchhhh-------CHhhHHHHHHHHhc
Q 048309 100 LSAEQMKYA---EMKVNEAGLQDHIRLYLCDYRQLP------KAKKYDRIISCEMMEAV-------GHEYMEEYFGCCES 163 (288)
Q Consensus 100 ~s~~~~~~a---~~~~~~~g~~~~v~~~~~d~~~~~------~~~~fD~I~~~~~l~~~-------~~~~~~~~l~~~~~ 163 (288)
+++.+++.| +++++.+|+...+++.+.|+.+.. ++...++|+++...-.- +.+.+.++...+.+
T Consensus 122 ~d~~ai~~A~~~r~n~~~Agl~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPPYGERl~~~~~~~~~~~~~~~~~l~~ 201 (249)
T d1o9ga_ 122 SYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLAS 201 (249)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHcCCCceeeeeecchhccCcchhccCCCCCCEEEeCCCccccccccccchHHHHHHHHHHHHc
Confidence 999999888 468899999888999999987643 35678999998765432 22457788888888
Q ss_pred ccccCcEEEEE
Q 048309 164 LLAKDGLLVLQ 174 (288)
Q Consensus 164 ~LkpgG~l~~~ 174 (288)
.+.....++++
T Consensus 202 ~~p~~s~~~it 212 (249)
T d1o9ga_ 202 ALPAHAVIAVT 212 (249)
T ss_dssp HSCTTCEEEEE
T ss_pred cCCCCcEEEEe
Confidence 89766666664
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=97.04 E-value=0.0025 Score=48.99 Aligned_cols=105 Identities=15% Similarity=0.114 Sum_probs=67.7
Q ss_pred HHHHHHHcCCCCCCEEEEECCcc-cHHHHHHHHccC-CEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEE-cccCCC---
Q 048309 58 HSLLIEKARVSKEHEVLEIGCGW-GTFAIEVVRQTG-CNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYL-CDYRQL--- 131 (288)
Q Consensus 58 ~~~l~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~-~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~-~d~~~~--- 131 (288)
+..+.+..+++++.+|+=+|||. |..+..+++..+ .+|+++|.+++.++.|++. |- ..++. .|....
T Consensus 18 ~~Av~~~~~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~----GA---~~~in~~~~~~~~~~ 90 (176)
T d1d1ta2 18 YGAAVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAV----GA---TECISPKDSTKPISE 90 (176)
T ss_dssp HHHHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHH----TC---SEEECGGGCSSCHHH
T ss_pred HHHHHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhc----CC---cEEECccccchHHHH
Confidence 34456677789999999999996 777777777755 6899999999999999876 32 22332 121111
Q ss_pred ----CCCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEee
Q 048309 132 ----PKAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 132 ----~~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
.....+|+++-...- ...+...+..+++++|++++.-.
T Consensus 91 ~~~~~~g~G~d~vi~~~g~-------~~~~~~a~~~~~~~~G~~v~vG~ 132 (176)
T d1d1ta2 91 VLSEMTGNNVGYTFEVIGH-------LETMIDALASCHMNYGTSVVVGV 132 (176)
T ss_dssp HHHHHHTSCCCEEEECSCC-------HHHHHHHHTTSCTTTCEEEECSC
T ss_pred HHHHhccccceEEEEeCCc-------hHHHHHHHHHhhcCCeEEEEEEc
Confidence 134679988764221 12222333345566688888543
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.95 E-value=0.0012 Score=50.85 Aligned_cols=103 Identities=17% Similarity=0.133 Sum_probs=70.0
Q ss_pred HHHHHHHHHcCCCCCCEEEEEC-Cc-ccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-
Q 048309 56 RKHSLLIEKARVSKEHEVLEIG-CG-WGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP- 132 (288)
Q Consensus 56 ~~~~~l~~~~~~~~~~~vLDiG-cG-~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~- 132 (288)
..+..+.+...++++.+||=.| || .|..+.++++..++++++++-+++..+.+++ .|.. .++.-.-.++.
T Consensus 12 TA~~al~~~~~~~~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~----~Ga~---~vi~~~~~~~~~ 84 (183)
T d1pqwa_ 12 TAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSR----LGVE---YVGDSRSVDFAD 84 (183)
T ss_dssp HHHHHHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHT----TCCS---EEEETTCSTHHH
T ss_pred HHHHHHHHHhCCCCCCEEEEECCCCCcccccchhhccccccceeeeccccccccccc----cccc---ccccCCccCHHH
Confidence 3444555666788999999877 34 5899999998888999999888877766653 3432 33332222221
Q ss_pred ------CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 133 ------KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 133 ------~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
.+..+|+|+..-. .+.++.+.+.|+++|+++..
T Consensus 85 ~v~~~t~~~g~d~v~d~~g---------~~~~~~~~~~l~~~G~~v~~ 123 (183)
T d1pqwa_ 85 EILELTDGYGVDVVLNSLA---------GEAIQRGVQILAPGGRFIEL 123 (183)
T ss_dssp HHHHHTTTCCEEEEEECCC---------THHHHHHHHTEEEEEEEEEC
T ss_pred HHHHHhCCCCEEEEEeccc---------chHHHHHHHHhcCCCEEEEE
Confidence 3467999997543 12445567899999998873
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=96.94 E-value=0.00027 Score=53.94 Aligned_cols=97 Identities=15% Similarity=0.201 Sum_probs=70.0
Q ss_pred CCCEEEEECCcc-cHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-CCCCCCEEEEccch
Q 048309 69 KEHEVLEIGCGW-GTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-KAKKYDRIISCEMM 146 (288)
Q Consensus 69 ~~~~vLDiGcG~-G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~~fD~I~~~~~l 146 (288)
++.+|+-||+|. |..++..|...+++|+.+|.+++.++..+..... +++....+-..+. .-...|+|+..-.+
T Consensus 31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~-----~~~~~~~~~~~l~~~~~~aDivI~aali 105 (168)
T d1pjca1 31 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGS-----RVELLYSNSAEIETAVAEADLLIGAVLV 105 (168)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGG-----GSEEEECCHHHHHHHHHTCSEEEECCCC
T ss_pred CCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcc-----cceeehhhhhhHHHhhccCcEEEEeeec
Confidence 467999999997 8888888888899999999999999888776543 4566665554444 33579999987544
Q ss_pred hhhCHhhHHHHHHHHhcccccCcEEE
Q 048309 147 EAVGHEYMEEYFGCCESLLAKDGLLV 172 (288)
Q Consensus 147 ~~~~~~~~~~~l~~~~~~LkpgG~l~ 172 (288)
.-- ..+.-+-+++.+.+|||.+++
T Consensus 106 pG~--~aP~lIt~~mv~~Mk~GSVIV 129 (168)
T d1pjca1 106 PGR--RAPILVPASLVEQMRTGSVIV 129 (168)
T ss_dssp TTS--SCCCCBCHHHHTTSCTTCEEE
T ss_pred CCc--ccCeeecHHHHhhcCCCcEEE
Confidence 322 222334455668999999655
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=96.86 E-value=0.0055 Score=46.55 Aligned_cols=103 Identities=12% Similarity=0.055 Sum_probs=69.8
Q ss_pred HHHHHHHcCCCCCCEEEEECCcc-cHHHHHHHHccC-CEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEccc-CCC---
Q 048309 58 HSLLIEKARVSKEHEVLEIGCGW-GTFAIEVVRQTG-CNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDY-RQL--- 131 (288)
Q Consensus 58 ~~~l~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~-~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~-~~~--- 131 (288)
+..+.+..++++|.+||=.|||. |.++.++++..+ ..|+++|.+++..+.+++. |. ..++..+- .+.
T Consensus 17 y~al~~~~~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~l----Ga---~~~i~~~~~~~~~~~ 89 (176)
T d2fzwa2 17 YGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEF----GA---TECINPQDFSKPIQE 89 (176)
T ss_dssp HHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHH----TC---SEEECGGGCSSCHHH
T ss_pred HHHHHHhhCCCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHh----CC---cEEEeCCchhhHHHH
Confidence 44456677889999999999874 777788887744 6899999999888887765 32 23332211 111
Q ss_pred --C--CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 132 --P--KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 132 --~--~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
. ..+.+|+|+-.-.- ...++.+...+++||.+++..
T Consensus 90 ~~~~~~~~g~D~vid~~G~--------~~~~~~~~~~~~~g~~~~~v~ 129 (176)
T d2fzwa2 90 VLIEMTDGGVDYSFECIGN--------VKVMRAALEACHKGWGVSVVV 129 (176)
T ss_dssp HHHHHTTSCBSEEEECSCC--------HHHHHHHHHTBCTTTCEEEEC
T ss_pred HHHHHcCCCCcEeeecCCC--------HHHHHHHHHhhcCCceeEEEE
Confidence 0 34679999875321 345667778899998776643
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=96.81 E-value=0.0032 Score=48.43 Aligned_cols=102 Identities=20% Similarity=0.253 Sum_probs=72.0
Q ss_pred HHHHHHHHcCCCCCCEEEEECCc--ccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC--
Q 048309 57 KHSLLIEKARVSKEHEVLEIGCG--WGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-- 132 (288)
Q Consensus 57 ~~~~l~~~~~~~~~~~vLDiGcG--~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-- 132 (288)
.+..+.+..++++|++||=.|++ .|..+..+++..+++|++++-+++..+.+++. |. -.++.-+-.+..
T Consensus 17 A~~al~~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~----Ga---~~vi~~~~~~~~~~ 89 (182)
T d1v3va2 17 AYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQI----GF---DAAFNYKTVNSLEE 89 (182)
T ss_dssp HHHHHHTTTCCCSSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT----TC---SEEEETTSCSCHHH
T ss_pred HHHHHHHHhCCCCCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhh----hh---hhhcccccccHHHH
Confidence 34455567788999999988864 47888999988889999999998877666554 43 233333322221
Q ss_pred -----CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 133 -----KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 133 -----~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
....+|+|+-. ++ .+.++...+.|+++|++++.
T Consensus 90 ~~~~~~~~Gvd~v~D~-----vG----~~~~~~~~~~l~~~G~~v~~ 127 (182)
T d1v3va2 90 ALKKASPDGYDCYFDN-----VG----GEFLNTVLSQMKDFGKIAIC 127 (182)
T ss_dssp HHHHHCTTCEEEEEES-----SC----HHHHHHHGGGEEEEEEEEEC
T ss_pred HHHHhhcCCCceeEEe-----cC----chhhhhhhhhccCCCeEEee
Confidence 44679998864 22 34567788999999999973
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=96.79 E-value=0.0061 Score=46.43 Aligned_cols=100 Identities=17% Similarity=0.161 Sum_probs=69.3
Q ss_pred HHHHHHcCCCCCCEEEEECCc--ccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCC-----
Q 048309 59 SLLIEKARVSKEHEVLEIGCG--WGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQL----- 131 (288)
Q Consensus 59 ~~l~~~~~~~~~~~vLDiGcG--~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~----- 131 (288)
..+.+..+++++++||=.|+| .|..+..+++..+++|++++.+++..+.+++. |- -.++.-.-.++
T Consensus 18 ~al~~~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~l----Ga---~~vi~~~~~d~~~~v~ 90 (179)
T d1qora2 18 YLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKA----GA---WQVINYREEDLVERLK 90 (179)
T ss_dssp HHHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHH----TC---SEEEETTTSCHHHHHH
T ss_pred HHHHHHhCCCCCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHhc----CC---eEEEECCCCCHHHHHH
Confidence 334455678899999988655 58889999988889999999999998888754 43 13333222221
Q ss_pred --CCCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 132 --PKAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 132 --~~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
..+..+|+|+....-+ .+......++++|++++.
T Consensus 91 ~~t~g~g~d~v~d~~g~~---------~~~~~~~~l~~~G~~v~~ 126 (179)
T d1qora2 91 EITGGKKVRVVYDSVGRD---------TWERSLDCLQRRGLMVSF 126 (179)
T ss_dssp HHTTTCCEEEEEECSCGG---------GHHHHHHTEEEEEEEEEC
T ss_pred HHhCCCCeEEEEeCccHH---------HHHHHHHHHhcCCeeeec
Confidence 1346789888754322 345567899999998764
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=96.68 E-value=0.00041 Score=53.27 Aligned_cols=95 Identities=23% Similarity=0.311 Sum_probs=66.3
Q ss_pred HHHHcCCCCCCEEEEECC-cc-cHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC----CC
Q 048309 61 LIEKARVSKEHEVLEIGC-GW-GTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP----KA 134 (288)
Q Consensus 61 l~~~~~~~~~~~vLDiGc-G~-G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~----~~ 134 (288)
.+...+++++.+||-.|. |. |..+..+++..+++|++++.+++..+.+++ .|.+ .++ |..+.. ..
T Consensus 19 al~~~~~~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~----lGa~---~~i--~~~~~~~~~~~~ 89 (171)
T d1iz0a2 19 ALKRAQARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLA----LGAE---EAA--TYAEVPERAKAW 89 (171)
T ss_dssp HHHHTTCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHH----TTCS---EEE--EGGGHHHHHHHT
T ss_pred HHHHhCCCCCCEEEEEeccccchhhhhhhhcccccccccccccccccccccc----cccc---eee--ehhhhhhhhhcc
Confidence 456678899999998884 54 888999998888999999998887776654 3542 222 222221 34
Q ss_pred CCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 135 KKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 135 ~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
..+|+|+-.. + + .+.+..+.|+|+|+++..
T Consensus 90 ~g~D~v~d~~-----G-~----~~~~~~~~l~~~G~~v~~ 119 (171)
T d1iz0a2 90 GGLDLVLEVR-----G-K----EVEESLGLLAHGGRLVYI 119 (171)
T ss_dssp TSEEEEEECS-----C-T----THHHHHTTEEEEEEEEEC
T ss_pred cccccccccc-----c-h----hHHHHHHHHhcCCcEEEE
Confidence 6799988632 1 1 235567899999999873
|
| >d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: ML2640-like domain: Putative methyltransferase ML2640 species: Mycobacterium leprae [TaxId: 1769]
Probab=96.64 E-value=0.013 Score=48.71 Aligned_cols=122 Identities=15% Similarity=0.151 Sum_probs=84.3
Q ss_pred HHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCC--CceEEEEcccCCC-
Q 048309 55 MRKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQ--DHIRLYLCDYRQL- 131 (288)
Q Consensus 55 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~--~~v~~~~~d~~~~- 131 (288)
.+.++..+...-......|+.+|||-=.-...+....+.+++=||. |++++.-++.+++.+.. .+...+..|+.+-
T Consensus 75 tr~~D~~~~~~~~~g~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~-p~vi~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~ 153 (297)
T d2uyoa1 75 TNFFDTYFNNAVIDGIRQFVILASGLDSRAYRLDWPTGTTVYEIDQ-PKVLAYKSTTLAEHGVTPTADRREVPIDLRQDW 153 (297)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEETCTTCCHHHHSCCCTTCEEEEEEC-HHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCH
T ss_pred HHHHHHHHHHHHhhCCCeEEEeCcccCChhhhcCCCcCceEEEcCC-hHHHHHHHHHHHhcCCCCCceEEEecccccchH
Confidence 3344444443322233567779999866655553224667888884 88888888888876543 3567788887652
Q ss_pred C---C-----CCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 132 P---K-----AKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 132 ~---~-----~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
. . ....=++++-+++.+++++...++++.+.+...||+.+++....
T Consensus 154 ~~~L~~~g~d~~~ptl~i~EGvl~YL~~~~~~~ll~~i~~~~~~GS~l~~d~~~ 207 (297)
T d2uyoa1 154 PPALRSAGFDPSARTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETSP 207 (297)
T ss_dssp HHHHHHTTCCTTSCEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECCC
T ss_pred HHHHHhcCCCCCCCEEEEEccccccCCHHHHHHHHHHHHHhCCCCCEEEEEecc
Confidence 1 1 12334677778899999999999999999999999999986544
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=96.46 E-value=0.0042 Score=49.98 Aligned_cols=56 Identities=27% Similarity=0.317 Sum_probs=47.2
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHH
Q 048309 56 RKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVN 113 (288)
Q Consensus 56 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~ 113 (288)
..+..+++... .+|..|||.-||+|+.+....+ .+.+.+|+|++++.++.|+++++
T Consensus 200 ~L~~~lI~~~s-~~gd~VlDpF~GSGTT~~aa~~-~~R~~ig~El~~~y~~~a~~Rl~ 255 (256)
T d1g60a_ 200 DLIERIIRASS-NPNDLVLDCFMGSGTTAIVAKK-LGRNFIGCDMNAEYVNQANFVLN 255 (256)
T ss_dssp HHHHHHHHHHC-CTTCEEEESSCTTCHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHH
T ss_pred hHHHHHHHHhC-CCCCEEEECCCCchHHHHHHHH-cCCeEEEEeCCHHHHHHHHHHHc
Confidence 34566776664 5788999999999999887666 58899999999999999999875
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.42 E-value=0.00089 Score=51.68 Aligned_cols=105 Identities=14% Similarity=0.165 Sum_probs=68.5
Q ss_pred HHHHHHcCCCCCCEEEEEC--CcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCC-CC--C
Q 048309 59 SLLIEKARVSKEHEVLEIG--CGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQ-LP--K 133 (288)
Q Consensus 59 ~~l~~~~~~~~~~~vLDiG--cG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~-~~--~ 133 (288)
..+.+....+++.+||--| .|.|..+.++++..+++|+++.-+++..+.+++. |-..-+. ...+..+ .. .
T Consensus 21 ~~L~~~g~~~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~l----Ga~~vi~-~~~~~~~~~~~~~ 95 (176)
T d1xa0a2 21 HRLEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVL----GAKEVLA-REDVMAERIRPLD 95 (176)
T ss_dssp HHHHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHT----TCSEEEE-CC---------CC
T ss_pred HHHHHhCCCCCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHhc----ccceeee-cchhHHHHHHHhh
Confidence 3355556677789999888 4568899999988899999999888888777654 3321111 1111111 11 4
Q ss_pred CCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 134 AKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 134 ~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
++.+|+|+-.-. ...+.+..+.|+|||+++..-..
T Consensus 96 ~~gvD~vid~vg---------g~~~~~~l~~l~~~Griv~~G~~ 130 (176)
T d1xa0a2 96 KQRWAAAVDPVG---------GRTLATVLSRMRYGGAVAVSGLT 130 (176)
T ss_dssp SCCEEEEEECST---------TTTHHHHHHTEEEEEEEEECSCC
T ss_pred ccCcCEEEEcCC---------chhHHHHHHHhCCCceEEEeecc
Confidence 568998886422 22356667999999999985443
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=96.32 E-value=0.016 Score=43.97 Aligned_cols=102 Identities=15% Similarity=0.119 Sum_probs=65.7
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcc-cHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEE-cccCCC--
Q 048309 57 KHSLLIEKARVSKEHEVLEIGCGW-GTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYL-CDYRQL-- 131 (288)
Q Consensus 57 ~~~~l~~~~~~~~~~~vLDiGcG~-G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~-~d~~~~-- 131 (288)
.+..+.+..++++|.+||=+|+|. |..+..+++. ...+|+++|.+++..+.+++. |. ..++. .+..+.
T Consensus 16 ay~al~~~~~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~----Ga---~~~i~~~~~~~~~~ 88 (176)
T d2jhfa2 16 GYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEV----GA---TECVNPQDYKKPIQ 88 (176)
T ss_dssp HHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT----TC---SEEECGGGCSSCHH
T ss_pred HHHHHHHhhCCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHh----CC---eeEEecCCchhHHH
Confidence 344556777899999999999875 5566666666 446999999999988887665 32 22222 222221
Q ss_pred -----CCCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccC-cEEEE
Q 048309 132 -----PKAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKD-GLLVL 173 (288)
Q Consensus 132 -----~~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~Lkpg-G~l~~ 173 (288)
...+.+|+|+-..... ..++.+...++++ |.+++
T Consensus 89 ~~~~~~~~~G~D~vid~~G~~--------~~~~~a~~~~~~~~g~~~~ 128 (176)
T d2jhfa2 89 EVLTEMSNGGVDFSFEVIGRL--------DTMVTALSCCQEAYGVSVI 128 (176)
T ss_dssp HHHHHHTTSCBSEEEECSCCH--------HHHHHHHHHBCTTTCEEEE
T ss_pred HHHHHHhcCCCCEEEecCCch--------hHHHHHHHHHhcCCcceEE
Confidence 1346899998754322 3344455677776 55554
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=95.97 E-value=0.028 Score=42.41 Aligned_cols=101 Identities=13% Similarity=0.079 Sum_probs=62.9
Q ss_pred HHHHHHHcCCCCCCEEEEECCcc-cHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC---
Q 048309 58 HSLLIEKARVSKEHEVLEIGCGW-GTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP--- 132 (288)
Q Consensus 58 ~~~l~~~~~~~~~~~vLDiGcG~-G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~--- 132 (288)
+..+.+..+++++.+|+=+|||. |..+..+++. .+..|+++|.+++.++.+++. |- ..++.-+-.+..
T Consensus 17 y~a~~~~a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~----GA---d~~in~~~~~~~~~~ 89 (175)
T d1cdoa2 17 FGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVF----GA---TDFVNPNDHSEPISQ 89 (175)
T ss_dssp HHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT----TC---CEEECGGGCSSCHHH
T ss_pred HHHHHHhhCCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHc----CC---cEEEcCCCcchhHHH
Confidence 34455667889999999999998 4445555555 566899999999988877654 43 244432222111
Q ss_pred -----CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEE
Q 048309 133 -----KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVL 173 (288)
Q Consensus 133 -----~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~ 173 (288)
....+|+++-.-.- ...+..+...+++||..++
T Consensus 90 ~~~~~~~~G~d~vid~~G~--------~~~~~~a~~~~~~g~~~~~ 127 (175)
T d1cdoa2 90 VLSKMTNGGVDFSLECVGN--------VGVMRNALESCLKGWGVSV 127 (175)
T ss_dssp HHHHHHTSCBSEEEECSCC--------HHHHHHHHHTBCTTTCEEE
T ss_pred HHHhhccCCcceeeeecCC--------HHHHHHHHHHhhCCCccee
Confidence 24579999864321 2334455566666644443
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=95.95 E-value=0.038 Score=41.21 Aligned_cols=85 Identities=15% Similarity=0.174 Sum_probs=57.0
Q ss_pred EEEEECCcc-c-HHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCEEEEccchhhh
Q 048309 72 EVLEIGCGW-G-TFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMMEAV 149 (288)
Q Consensus 72 ~vLDiGcG~-G-~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~~~~~l~~~ 149 (288)
+|.=||+|. | .++..+.+ .+.+|++.|.+++.++.+++. ++ +.....+.+. -...|+|+..-
T Consensus 2 kI~iIG~G~mG~~lA~~l~~-~g~~V~~~d~~~~~~~~a~~~----~~---~~~~~~~~~~---~~~~DiIilav----- 65 (165)
T d2f1ka2 2 KIGVVGLGLIGASLAGDLRR-RGHYLIGVSRQQSTCEKAVER----QL---VDEAGQDLSL---LQTAKIIFLCT----- 65 (165)
T ss_dssp EEEEECCSHHHHHHHHHHHH-TTCEEEEECSCHHHHHHHHHT----TS---CSEEESCGGG---GTTCSEEEECS-----
T ss_pred EEEEEeecHHHHHHHHHHHH-CCCEEEEEECCchHHHHHHHh----hc---cceeeeeccc---ccccccccccC-----
Confidence 577789985 4 45566655 488999999999887766542 32 2222222222 25789998743
Q ss_pred CHhhHHHHHHHHhcccccCcEEE
Q 048309 150 GHEYMEEYFGCCESLLAKDGLLV 172 (288)
Q Consensus 150 ~~~~~~~~l~~~~~~LkpgG~l~ 172 (288)
+.....+.++++...|+++-.++
T Consensus 66 p~~~~~~vl~~l~~~l~~~~iv~ 88 (165)
T d2f1ka2 66 PIQLILPTLEKLIPHLSPTAIVT 88 (165)
T ss_dssp CHHHHHHHHHHHGGGSCTTCEEE
T ss_pred cHhhhhhhhhhhhhhccccccee
Confidence 33556889999999988888554
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=95.88 E-value=0.0067 Score=50.31 Aligned_cols=57 Identities=12% Similarity=0.184 Sum_probs=47.1
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHH
Q 048309 56 RKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNE 114 (288)
Q Consensus 56 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~ 114 (288)
..+.+++...- .+|..|||.-||+|+.+....+ .+.+.+|+|++++.++.|++++.+
T Consensus 238 ~L~~rlI~~~s-~~gdiVlDpF~GSGTT~~AA~~-lgR~~Ig~El~~~y~~~a~~Rl~~ 294 (320)
T d1booa_ 238 KLPEFFIRMLT-EPDDLVVDIFGGSNTTGLVAER-ESRKWISFEMKPEYVAASAFRFLD 294 (320)
T ss_dssp HHHHHHHHHHC-CTTCEEEETTCTTCHHHHHHHH-TTCEEEEEESCHHHHHHHHGGGSC
T ss_pred HHHHHhhhhcc-cCCCEEEecCCCCcHHHHHHHH-cCCcEEEEeCCHHHHHHHHHHHHh
Confidence 35566676654 5788999999999999887766 588999999999999999888654
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=95.82 E-value=0.011 Score=48.02 Aligned_cols=58 Identities=16% Similarity=0.102 Sum_probs=48.7
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHc
Q 048309 56 RKHSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEA 115 (288)
Q Consensus 56 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~ 115 (288)
..+.++++... .+|..|||.-||+|+.+....+ .+.+.+|+|+++...+.|+++++..
T Consensus 195 ~L~~~~I~~~s-~~gdiVLDpF~GSGTT~~Aa~~-lgR~~ig~El~~~y~~~a~~Ri~~~ 252 (279)
T d1eg2a_ 195 AVIERLVRALS-HPGSTVLDFFAGSGVTARVAIQ-EGRNSICTDAAPVFKEYYQKQLTFL 252 (279)
T ss_dssp HHHHHHHHHHS-CTTCEEEETTCTTCHHHHHHHH-HTCEEEEEESSTHHHHHHHHHHHHC
T ss_pred hHHHHHHHhhc-CCCCEEEecCCCCcHHHHHHHH-hCCeEEEEeCCHHHHHHHHHHHHHh
Confidence 45666777654 5889999999999999887766 4889999999999999999998764
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=95.74 E-value=0.042 Score=41.09 Aligned_cols=88 Identities=19% Similarity=0.231 Sum_probs=57.7
Q ss_pred EEEEECCcc-cH-HHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCEEEEccchhh
Q 048309 72 EVLEIGCGW-GT-FAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMMEA 148 (288)
Q Consensus 72 ~vLDiGcG~-G~-~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~~~~~l~~ 148 (288)
+|+=||||. |. ++..|.+. ...+|+|+|.+++.++.+++. +. +.....+.... .....|+|+..-..
T Consensus 3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~----~~---~~~~~~~~~~~-~~~~~dlIila~p~-- 72 (171)
T d2g5ca2 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL----GI---IDEGTTSIAKV-EDFSPDFVMLSSPV-- 72 (171)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT----TS---CSEEESCGGGG-GGTCCSEEEECSCH--
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHh----hc---chhhhhhhhhh-hccccccccccCCc--
Confidence 588899996 44 55566554 446899999999998887754 22 22222222221 22468999875433
Q ss_pred hCHhhHHHHHHHHhcccccCcEEE
Q 048309 149 VGHEYMEEYFGCCESLLAKDGLLV 172 (288)
Q Consensus 149 ~~~~~~~~~l~~~~~~LkpgG~l~ 172 (288)
......++++...++++..++
T Consensus 73 ---~~~~~vl~~l~~~~~~~~ii~ 93 (171)
T d2g5ca2 73 ---RTFREIAKKLSYILSEDATVT 93 (171)
T ss_dssp ---HHHHHHHHHHHHHSCTTCEEE
T ss_pred ---hhhhhhhhhhhcccccccccc
Confidence 455788889999998876444
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=95.72 E-value=0.0045 Score=47.57 Aligned_cols=97 Identities=14% Similarity=0.098 Sum_probs=60.8
Q ss_pred CCCEEEEECCcc-cHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEc---ccC-------CCC-----
Q 048309 69 KEHEVLEIGCGW-GTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLC---DYR-------QLP----- 132 (288)
Q Consensus 69 ~~~~vLDiGcG~-G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~---d~~-------~~~----- 132 (288)
++.+|+-||+|. |..+...|...|++|+.+|.++..++..+..... .+++... +.+ .+.
T Consensus 28 ~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~~-----~i~~~~~~~~~~~~~~gyA~~~s~~~~~ 102 (183)
T d1l7da1 28 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGK-----FITVDDEAMKTAETAGGYAKEMGEEFRK 102 (183)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCE-----ECCC-----------------------C
T ss_pred CCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhhcc-----eEEEeccccccccccccchhhcCHHHHH
Confidence 466999999997 7788888888899999999999888777665321 1111000 000 000
Q ss_pred --------CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEE
Q 048309 133 --------KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLV 172 (288)
Q Consensus 133 --------~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~ 172 (288)
.-...|+|+..-.+.-- ..+.-+-+++.+.+|||.+++
T Consensus 103 ~~~~~l~~~l~~aDlVI~talipG~--~aP~lit~~mv~~Mk~GSVIV 148 (183)
T d1l7da1 103 KQAEAVLKELVKTDIAITTALIPGK--PAPVLITEEMVTKMKPGSVII 148 (183)
T ss_dssp CHHHHHHHHHTTCSEEEECCCCTTS--CCCCCSCHHHHTTSCTTCEEE
T ss_pred HHHHHHHHHHHhhhhheeeeecCCc--ccceeehHHHHHhcCCCcEEE
Confidence 01368999986544322 222224455668999999665
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=95.49 E-value=0.017 Score=44.43 Aligned_cols=105 Identities=13% Similarity=0.210 Sum_probs=65.0
Q ss_pred HHHHHHHcCCCCCCEEEEE--CCc-ccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEc---ccCCC
Q 048309 58 HSLLIEKARVSKEHEVLEI--GCG-WGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLC---DYRQL 131 (288)
Q Consensus 58 ~~~l~~~~~~~~~~~vLDi--GcG-~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~---d~~~~ 131 (288)
+..+.+...+++|.+||=+ |.| .|..+.++++..+++|+++--+++..+...+.+++.|.+ .++.- |..++
T Consensus 17 ~~~l~~~~~~~~g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~~~~~~~~~lGad---~vi~~~~~~~~~~ 93 (189)
T d1gu7a2 17 YLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGAT---QVITEDQNNSREF 93 (189)
T ss_dssp HHHHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCS---EEEEHHHHHCGGG
T ss_pred HHHHHHHhCCCCCCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccchHHhhhhhcccc---EEEeccccchhHH
Confidence 3444555678899888877 323 578888999888889988854544444445555555643 33332 22221
Q ss_pred C---------CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 132 P---------KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 132 ~---------~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
. ..+.+|+|+-. ++ ...+....+.|+|+|+++..
T Consensus 94 ~~~v~~~~~~~g~~vdvv~D~-----vg----~~~~~~~~~~l~~~G~~v~~ 136 (189)
T d1gu7a2 94 GPTIKEWIKQSGGEAKLALNC-----VG----GKSSTGIARKLNNNGLMLTY 136 (189)
T ss_dssp HHHHHHHHHHHTCCEEEEEES-----SC----HHHHHHHHHTSCTTCEEEEC
T ss_pred HHHHHHHHhhccCCceEEEEC-----CC----cchhhhhhhhhcCCcEEEEE
Confidence 1 23568888843 22 22345566899999999863
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=95.46 E-value=0.03 Score=42.69 Aligned_cols=93 Identities=15% Similarity=0.215 Sum_probs=62.1
Q ss_pred CCCCCEEEEEC--CcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC---CCCCCCEEE
Q 048309 67 VSKEHEVLEIG--CGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP---KAKKYDRII 141 (288)
Q Consensus 67 ~~~~~~vLDiG--cG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~---~~~~fD~I~ 141 (288)
.+++.+||-.| +|.|..+.++++..|++|+++.-+++..+.+++. |. -.++.-+-.+.. ....+|.++
T Consensus 29 ~~~~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k~~~~~~l----Ga---d~vi~~~~~~~~~~l~~~~~~~vv 101 (177)
T d1o89a2 29 RPQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKSL----GA---SRVLPRDEFAESRPLEKQVWAGAI 101 (177)
T ss_dssp CGGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHH----TE---EEEEEGGGSSSCCSSCCCCEEEEE
T ss_pred CCCCCcEEEEEccccchHHHHHHHHHcCCCeEEEecchhHHHHHHhh----cc---ccccccccHHHHHHHHhhcCCeeE
Confidence 33445787666 3468899999998899999999999887777654 32 233433322222 345678765
Q ss_pred EccchhhhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 142 SCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 142 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
- .+. ...+.+..+.|+++|+++..-
T Consensus 102 D-----~Vg----g~~~~~~l~~l~~~Griv~~G 126 (177)
T d1o89a2 102 D-----TVG----DKVLAKVLAQMNYGGCVAACG 126 (177)
T ss_dssp E-----SSC----HHHHHHHHHTEEEEEEEEECC
T ss_pred E-----Ecc----hHHHHHHHHHhccccceEeec
Confidence 2 232 235778889999999999843
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=95.43 E-value=0.0051 Score=46.77 Aligned_cols=101 Identities=18% Similarity=0.235 Sum_probs=66.1
Q ss_pred HHHHcCCCCCCEEEEEC--CcccHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccC--CCC--CC
Q 048309 61 LIEKARVSKEHEVLEIG--CGWGTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYR--QLP--KA 134 (288)
Q Consensus 61 l~~~~~~~~~~~vLDiG--cG~G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~--~~~--~~ 134 (288)
+.+.-..+++.+||--| .|.|..+.++|+..+++|+++.-+++..+.+++. |.+ .+ +...|.. ... ..
T Consensus 15 L~~~g~~~~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~~~~~~l----Gad-~v-i~~~~~~~~~~~~~~~ 88 (167)
T d1tt7a2 15 LEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQL----GAS-EV-ISREDVYDGTLKALSK 88 (167)
T ss_dssp HHHTTCCGGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHHH----TCS-EE-EEHHHHCSSCCCSSCC
T ss_pred HHHhcCCCCCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHHHHHHhh----ccc-ce-EeccchhchhhhcccC
Confidence 44444455666788777 4468999999999889999999988887777654 432 11 1112211 111 34
Q ss_pred CCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEee
Q 048309 135 KKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFS 176 (288)
Q Consensus 135 ~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (288)
+.+|+|+-. +. ...+.+..+.|+|+|++++.-.
T Consensus 89 ~gvd~vid~-----vg----g~~~~~~~~~l~~~G~iv~~G~ 121 (167)
T d1tt7a2 89 QQWQGAVDP-----VG----GKQLASLLSKIQYGGSVAVSGL 121 (167)
T ss_dssp CCEEEEEES-----CC----THHHHHHHTTEEEEEEEEECCC
T ss_pred CCceEEEec-----Cc----HHHHHHHHHHhccCceEEEeec
Confidence 678988753 22 3355667799999999987443
|
| >d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RPA4359-like domain: Hypothetical protein RPA4359 species: Rhodopseudomonas palustris [TaxId: 1076]
Probab=95.35 E-value=0.066 Score=45.55 Aligned_cols=86 Identities=14% Similarity=0.232 Sum_probs=54.1
Q ss_pred HHHHHHHcCCCCCCEEEEECCcccHHHHHHHHc--------cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccC
Q 048309 58 HSLLIEKARVSKEHEVLEIGCGWGTFAIEVVRQ--------TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYR 129 (288)
Q Consensus 58 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~--------~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~ 129 (288)
+..+.+.++.++...|+|+|+|+|.++..+.+. ...+++.+|.|+...+.-++.+... .++.+ ..++.
T Consensus 68 ~~~~~~~~~~~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l~~~---~~i~w-~~~~~ 143 (365)
T d1zkda1 68 SASVWKAADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAGI---RNIHW-HDSFE 143 (365)
T ss_dssp HHHHHHHTTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTTC---SSEEE-ESSGG
T ss_pred HHHHHHHhCCCccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHhccc---cccee-ccChh
Confidence 344455566556678999999999998877553 1246899999998877666655432 23443 23444
Q ss_pred CCCCCCCCCEEEEccchhhh
Q 048309 130 QLPKAKKYDRIISCEMMEAV 149 (288)
Q Consensus 130 ~~~~~~~fD~I~~~~~l~~~ 149 (288)
.++ ...-+|+++..+..+
T Consensus 144 ~~~--~~~g~iiaNE~fDAl 161 (365)
T d1zkda1 144 DVP--EGPAVILANEYFDVL 161 (365)
T ss_dssp GSC--CSSEEEEEESSGGGS
T ss_pred hcc--cCCeEEEecccCccc
Confidence 433 223466666655544
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=95.35 E-value=0.13 Score=36.70 Aligned_cols=88 Identities=13% Similarity=0.086 Sum_probs=54.6
Q ss_pred EEEEECCcc-cHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-----CCCCCCEEEEccc
Q 048309 72 EVLEIGCGW-GTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-----KAKKYDRIISCEM 145 (288)
Q Consensus 72 ~vLDiGcG~-G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-----~~~~fD~I~~~~~ 145 (288)
+|+=+|+|. |..........+.+|+.+|.+++.++.+++. . .+.++.+|..+.. .-..+|++++...
T Consensus 2 ~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~---~----~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~t~ 74 (132)
T d1lssa_ 2 YIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAE---I----DALVINGDCTKIKTLEDAGIEDADMYIAVTG 74 (132)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH---C----SSEEEESCTTSHHHHHHTTTTTCSEEEECCS
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCcceecCChhhhhhhhhh---h----hhhhccCcccchhhhhhcChhhhhhhcccCC
Confidence 677788764 4333322222578999999999988776543 1 3688999998754 3467899888532
Q ss_pred hhhhCHhhHHHHHHHHhcccccCcEE
Q 048309 146 MEAVGHEYMEEYFGCCESLLAKDGLL 171 (288)
Q Consensus 146 l~~~~~~~~~~~l~~~~~~LkpgG~l 171 (288)
-. ...-+.....+.+.+.-.+
T Consensus 75 ~d-----~~N~~~~~~~k~~~~~~iI 95 (132)
T d1lssa_ 75 KE-----EVNLMSSLLAKSYGINKTI 95 (132)
T ss_dssp CH-----HHHHHHHHHHHHTTCCCEE
T ss_pred cH-----HHHHHHHHHHHHcCCceEE
Confidence 22 2223344444556666433
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.41 E-value=0.11 Score=39.61 Aligned_cols=102 Identities=18% Similarity=0.205 Sum_probs=64.0
Q ss_pred HHHHHHHcCCCCC--CEEEEEC--CcccHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC
Q 048309 58 HSLLIEKARVSKE--HEVLEIG--CGWGTFAIEVVRQTGC-NYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP 132 (288)
Q Consensus 58 ~~~l~~~~~~~~~--~~vLDiG--cG~G~~~~~la~~~~~-~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~ 132 (288)
+..+.+..+++++ ++||-.| .|.|..+.++++..++ .|++++.+++...... ...|- -.++...-.++.
T Consensus 17 ~~~l~~~~~~~~G~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~---~~~ga---d~vi~~~~~~~~ 90 (187)
T d1vj1a2 17 LIGVQEKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLT---SELGF---DAAVNYKTGNVA 90 (187)
T ss_dssp HHHHHHHSCCCTTSCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHH---HHSCC---SEEEETTSSCHH
T ss_pred HHHHHHHhCCCCCCCCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhh---hcccc---eEEeeccchhHH
Confidence 3445566666766 7899877 4569999999998565 5777777766544332 23343 233333222211
Q ss_pred ------CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 133 ------KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 133 ------~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
.+..+|+|+-. ++ ...++...+.|+++|+++..
T Consensus 91 ~~~~~~~~~GvDvv~D~-----vG----g~~~~~~~~~l~~~G~iv~~ 129 (187)
T d1vj1a2 91 EQLREACPGGVDVYFDN-----VG----GDISNTVISQMNENSHIILC 129 (187)
T ss_dssp HHHHHHCTTCEEEEEES-----SC----HHHHHHHHTTEEEEEEEEEC
T ss_pred HHHHHHhccCceEEEec-----CC----chhHHHHhhhccccccEEEe
Confidence 34679999853 22 23567778999999999863
|
| >d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HaeIII species: Haemophilus aegyptius [TaxId: 197575]
Probab=94.12 E-value=0.14 Score=41.84 Aligned_cols=71 Identities=15% Similarity=0.154 Sum_probs=53.9
Q ss_pred CEEEEECCcccHHHHHHHHccCCE-EEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC--CCCCCCEEEEccchh
Q 048309 71 HEVLEIGCGWGTFAIEVVRQTGCN-YTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP--KAKKYDRIISCEMME 147 (288)
Q Consensus 71 ~~vLDiGcG~G~~~~~la~~~~~~-v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~--~~~~fD~I~~~~~l~ 147 (288)
.+|+|+-||.|.+..-+-+. |.+ +.++|+++.+.+.-+.+. .-.++.+|+.++. .-...|+++....+.
T Consensus 1 mk~~~lF~G~Gg~~~gl~~a-G~~~~~a~e~d~~a~~~~~~N~-------~~~~~~~Di~~~~~~~~~~~dll~~g~PCq 72 (324)
T d1dcta_ 1 MNLISLFSGAGGLDLGFQKA-GFRIICANEYDKSIWKTYESNH-------SAKLIKGDISKISSDEFPKCDGIIGGPPCQ 72 (324)
T ss_dssp CEEEEESCSSCHHHHHHHHH-TCEEEEEEECCHHHHHHHHHHC-------CSEEEESCTTTSCGGGSCCCSEEEECCCCT
T ss_pred CeEEEeCcCcCHHHHHHHHC-CCEEEEEEeCCHHHHHHHHHHC-------CCCCccCChhhCCHhHcccccEEeeccccc
Confidence 37999999999998877654 555 459999998887766654 2367889999986 335799999887665
Q ss_pred hh
Q 048309 148 AV 149 (288)
Q Consensus 148 ~~ 149 (288)
.+
T Consensus 73 ~f 74 (324)
T d1dcta_ 73 SW 74 (324)
T ss_dssp TT
T ss_pred cc
Confidence 54
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.12 E-value=0.36 Score=36.76 Aligned_cols=102 Identities=18% Similarity=0.245 Sum_probs=66.1
Q ss_pred CEEEEECCcc-cH-HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHc-------CCCC--------------ceEEEEcc
Q 048309 71 HEVLEIGCGW-GT-FAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEA-------GLQD--------------HIRLYLCD 127 (288)
Q Consensus 71 ~~vLDiGcG~-G~-~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~-------g~~~--------------~v~~~~~d 127 (288)
++|.=||+|+ |. ++..++. .|.+|+.+|.+++.++.++++++.. +... ++... .|
T Consensus 5 kkvaViGaG~mG~~iA~~~a~-~G~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~-~d 82 (192)
T d1f0ya2 5 KHVTVIGGGLMGAGIAQVAAA-TGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATS-TD 82 (192)
T ss_dssp CEEEEECCSHHHHHHHHHHHH-TTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEE-SC
T ss_pred EEEEEECcCHHHHHHHHHHHh-CCCcEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhcccc-ch
Confidence 4788899997 43 4455555 5899999999999999888776532 2210 11111 11
Q ss_pred cCCCCCCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCC
Q 048309 128 YRQLPKAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTP 179 (288)
Q Consensus 128 ~~~~~~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 179 (288)
..+ .-...|+|+-. +.+-+ +...++++++.+.++++..+.-.+.+.+
T Consensus 83 ~~~--a~~~ad~ViEa-v~E~l--~~K~~v~~~l~~~~~~~~ilasnTS~l~ 129 (192)
T d1f0ya2 83 AAS--VVHSTDLVVEA-IVENL--KVKNELFKRLDKFAAEHTIFASNTSSLQ 129 (192)
T ss_dssp HHH--HTTSCSEEEEC-CCSCH--HHHHHHHHHHTTTSCTTCEEEECCSSSC
T ss_pred hHh--hhcccceehhh-cccch--hHHHHHHHHHhhhcccCceeeccCcccc
Confidence 111 12467887754 33444 6678999999999999987776554433
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.99 E-value=0.24 Score=39.58 Aligned_cols=77 Identities=19% Similarity=0.275 Sum_probs=59.5
Q ss_pred CCCEEEEECCcccH---HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-----------CC
Q 048309 69 KEHEVLEIGCGWGT---FAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-----------KA 134 (288)
Q Consensus 69 ~~~~vLDiGcG~G~---~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-----------~~ 134 (288)
+++.+|-.|++.|. .+..++++ |++|+.++.+++.++.+.+.++..+.+.++.++.+|+.+.. .-
T Consensus 9 k~Kv~lITGas~GIG~aiA~~la~~-G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~~ 87 (257)
T d1xg5a_ 9 RDRLALVTGASGGIGAAVARALVQQ-GLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQH 87 (257)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHhc
Confidence 47789999988764 34555554 88999999999999988888888776667899999998732 13
Q ss_pred CCCCEEEEccch
Q 048309 135 KKYDRIISCEMM 146 (288)
Q Consensus 135 ~~fD~I~~~~~l 146 (288)
+..|+++.+...
T Consensus 88 g~iD~lVnnAg~ 99 (257)
T d1xg5a_ 88 SGVDICINNAGL 99 (257)
T ss_dssp CCCSEEEECCCC
T ss_pred CCCCEEEecccc
Confidence 689999876543
|
| >d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HhaI species: Haemophilus haemolyticus [TaxId: 726]
Probab=92.68 E-value=0.14 Score=42.19 Aligned_cols=72 Identities=15% Similarity=0.107 Sum_probs=54.7
Q ss_pred CCCEEEEECCcccHHHHHHHHccCCE-EEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC--CCCCCCEEEEccc
Q 048309 69 KEHEVLEIGCGWGTFAIEVVRQTGCN-YTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP--KAKKYDRIISCEM 145 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~~la~~~~~~-v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~--~~~~fD~I~~~~~ 145 (288)
.+.+|+|+-||.|.+..-+-+. |.+ +.++|+++.+++.-+.+... ...+|+.++. .-..+|+++....
T Consensus 10 ~~lrv~~lFsG~Gg~~~gl~~a-G~~~v~a~e~d~~a~~~~~~N~~~--------~~~~Di~~~~~~~~~~~Dll~ggpP 80 (327)
T d2c7pa1 10 TGLRFIDLFAGLGGFRLALESC-GAECVYSNEWDKYAQEVYEMNFGE--------KPEGDITQVNEKTIPDHDILCAGFP 80 (327)
T ss_dssp TTCEEEEETCTTTHHHHHHHHT-TCEEEEEECCCHHHHHHHHHHHSC--------CCBSCGGGSCGGGSCCCSEEEEECC
T ss_pred CCCeEEEECccccHHHHHHHHC-CCeEEEEEeCCHHHHHHHHHHCCC--------CCcCchhcCchhhcceeeeeecccc
Confidence 5689999999999998888664 555 56699999999888877632 1257888776 3357999998776
Q ss_pred hhhh
Q 048309 146 MEAV 149 (288)
Q Consensus 146 l~~~ 149 (288)
+.-+
T Consensus 81 Cq~f 84 (327)
T d2c7pa1 81 CQAF 84 (327)
T ss_dssp CTTT
T ss_pred cchh
Confidence 5544
|
| >d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNMT2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.67 E-value=0.069 Score=44.36 Aligned_cols=73 Identities=14% Similarity=0.159 Sum_probs=52.5
Q ss_pred CCEEEEECCcccHHHHHHHHccCC--E-EEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC----CCCCCCEEEE
Q 048309 70 EHEVLEIGCGWGTFAIEVVRQTGC--N-YTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP----KAKKYDRIIS 142 (288)
Q Consensus 70 ~~~vLDiGcG~G~~~~~la~~~~~--~-v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~----~~~~fD~I~~ 142 (288)
+.+|+|+-||.|.+..-+-+. |. + +.++|+++.+++.-+.+. +...++.+|+.++. +...+|+++.
T Consensus 2 p~kv~~lF~G~Gg~~~gl~~a-G~~~~~~~a~E~~~~a~~~~~~n~------~~~~~~~~di~~~~~~~~~~~~~Dll~g 74 (343)
T d1g55a_ 2 PLRVLELYSGVGGMHHALRES-CIPAQVVAAIDVNTVANEVYKYNF------PHTQLLAKTIEGITLEEFDRLSFDMILM 74 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHH-TCSEEEEEEECCCHHHHHHHHHHC------TTSCEECSCGGGCCHHHHHHHCCSEEEE
T ss_pred CCEEEEcCcCccHHHHHHHHc-CCCCeEEEEEECCHHHHHHHHHHC------CCCCcccCchhhCCHhHcCCCCccEEEe
Confidence 458999999999988777554 42 3 679999998888777664 24567888998876 2347999999
Q ss_pred ccchhhh
Q 048309 143 CEMMEAV 149 (288)
Q Consensus 143 ~~~l~~~ 149 (288)
...+..+
T Consensus 75 gpPCq~f 81 (343)
T d1g55a_ 75 SPPCQPF 81 (343)
T ss_dssp CCC----
T ss_pred ecccccc
Confidence 8877665
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=92.17 E-value=0.15 Score=36.16 Aligned_cols=85 Identities=11% Similarity=0.092 Sum_probs=57.0
Q ss_pred CcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-----CCCCCCEEEEccchhhhCH
Q 048309 78 CGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-----KAKKYDRIISCEMMEAVGH 151 (288)
Q Consensus 78 cG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-----~~~~fD~I~~~~~l~~~~~ 151 (288)
||.|..+..+++. .+..++.+|.+++..+..+. . .+.++.+|..+.. .-.+++.+++...-
T Consensus 6 ~G~g~~g~~l~~~L~~~~i~vi~~d~~~~~~~~~----~----~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~~~----- 72 (129)
T d2fy8a1 6 CGWSESTLECLRELRGSEVFVLAEDENVRKKVLR----S----GANFVHGDPTRVSDLEKANVRGARAVIVNLES----- 72 (129)
T ss_dssp ESCCHHHHHHHHTSCGGGEEEEESCTTHHHHHHH----T----TCEEEESCTTSHHHHHHTTCTTCSEEEECCSS-----
T ss_pred ECCCHHHHHHHHHHcCCCCEEEEcchHHHHHHHh----c----CccccccccCCHHHHHHhhhhcCcEEEEeccc-----
Confidence 5667788888876 55678999999988765532 2 4689999997743 34678888875321
Q ss_pred hhHHHHHHHHhcccccCcEEEEEe
Q 048309 152 EYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 152 ~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
......+....+.+.|...++...
T Consensus 73 d~~n~~~~~~~r~~~~~~~iia~~ 96 (129)
T d2fy8a1 73 DSETIHCILGIRKIDESVRIIAEA 96 (129)
T ss_dssp HHHHHHHHHHHHHHCSSSCEEEEC
T ss_pred hhhhHHHHHHHHHHCCCceEEEEE
Confidence 223334445556778888777643
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=92.14 E-value=0.25 Score=34.98 Aligned_cols=89 Identities=8% Similarity=0.062 Sum_probs=51.2
Q ss_pred EEEEECCcc-cHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-----CCCCCCEEEEccc
Q 048309 72 EVLEIGCGW-GTFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-----KAKKYDRIISCEM 145 (288)
Q Consensus 72 ~vLDiGcG~-G~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-----~~~~fD~I~~~~~ 145 (288)
+++=+|+|. |..........+..|+.+|.+++.++.++. . ...++.+|..+.. .-..+|.+++...
T Consensus 2 ~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~----~----~~~~~~gd~~~~~~l~~a~i~~a~~vi~~~~ 73 (134)
T d2hmva1 2 QFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYAS----Y----ATHAVIANATEENELLSLGIRNFEYVIVAIG 73 (134)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTT----T----CSEEEECCTTCTTHHHHHTGGGCSEEEECCC
T ss_pred EEEEECCCHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHH----h----CCcceeeecccchhhhccCCccccEEEEEcC
Confidence 455677764 443332222258899999999998877642 2 2467789988765 2356887776432
Q ss_pred hhhhCHhhHHHHHHHHhcccccCcEEEE
Q 048309 146 MEAVGHEYMEEYFGCCESLLAKDGLLVL 173 (288)
Q Consensus 146 l~~~~~~~~~~~l~~~~~~LkpgG~l~~ 173 (288)
- .+-...+....+.+.+...++.
T Consensus 74 ~-----~~~~~~~~~~~~~~~~~~~iia 96 (134)
T d2hmva1 74 A-----NIQASTLTTLLLKELDIPNIWV 96 (134)
T ss_dssp S-----CHHHHHHHHHHHHHTTCSEEEE
T ss_pred c-----hHHhHHHHHHHHHHcCCCcEEe
Confidence 1 1122233333333445666665
|
| >d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: FkbM-like domain: Methyltransferase FkbM species: Methylobacillus flagellatus [TaxId: 405]
Probab=92.10 E-value=0.22 Score=42.67 Aligned_cols=51 Identities=8% Similarity=-0.021 Sum_probs=42.9
Q ss_pred CCCCCEEEEECCcccHHHHHHHHc---cCCEEEEEcCCHHHHHHHHHHHHHcCC
Q 048309 67 VSKEHEVLEIGCGWGTFAIEVVRQ---TGCNYTGITLSAEQMKYAEMKVNEAGL 117 (288)
Q Consensus 67 ~~~~~~vLDiGcG~G~~~~~la~~---~~~~v~giD~s~~~~~~a~~~~~~~g~ 117 (288)
+.++..++|||+-.|..+..+++. ...+|+++|+++...+..+++++.+..
T Consensus 210 l~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~n~~ 263 (395)
T d2py6a1 210 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTD 263 (395)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTT
T ss_pred cCCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHhccc
Confidence 567789999999999988877664 235899999999999999999887654
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=92.06 E-value=0.37 Score=35.73 Aligned_cols=97 Identities=14% Similarity=0.091 Sum_probs=56.8
Q ss_pred CEEEEECCcc-cH-HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEccc---CCCC-CCCCCCEEEEcc
Q 048309 71 HEVLEIGCGW-GT-FAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDY---RQLP-KAKKYDRIISCE 144 (288)
Q Consensus 71 ~~vLDiGcG~-G~-~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~---~~~~-~~~~fD~I~~~~ 144 (288)
++|.=||+|. |. ++..|++ .|.+|+++|.+++.++..++.-.........+...... .+.. .-..+|+|+..-
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~iii~v 80 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLAL-KGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIVV 80 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHH-TTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEECS
T ss_pred CEEEEECccHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEEEEE
Confidence 4778899996 43 3445555 48899999999988776654311000000001111100 0111 125789988742
Q ss_pred chhhhCHhhHHHHHHHHhcccccCcEEEE
Q 048309 145 MMEAVGHEYMEEYFGCCESLLAKDGLLVL 173 (288)
Q Consensus 145 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~~ 173 (288)
+.......++++...|+++-.+++
T Consensus 81 -----~~~~~~~~~~~i~~~l~~~~~iv~ 104 (184)
T d1bg6a2 81 -----PAIHHASIAANIASYISEGQLIIL 104 (184)
T ss_dssp -----CGGGHHHHHHHHGGGCCTTCEEEE
T ss_pred -----chhHHHHHHHHhhhccCCCCEEEE
Confidence 224567889999999999886654
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=91.49 E-value=0.4 Score=34.79 Aligned_cols=93 Identities=16% Similarity=0.079 Sum_probs=56.5
Q ss_pred CEEEEECCcccHHHHHHHHc---cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-----CCCCCCEEEE
Q 048309 71 HEVLEIGCGWGTFAIEVVRQ---TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-----KAKKYDRIIS 142 (288)
Q Consensus 71 ~~vLDiGcG~G~~~~~la~~---~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-----~~~~fD~I~~ 142 (288)
.+++=+|+|. .+..+++. .+.+++.+|.+++......+.... ..+.++.+|..+.. .-...|++++
T Consensus 4 nHiII~G~g~--~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~----~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~ 77 (153)
T d1id1a_ 4 DHFIVCGHSI--LAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLG----DNADVIPGDSNDSSVLKKAGIDRCRAILA 77 (153)
T ss_dssp SCEEEECCSH--HHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHC----TTCEEEESCTTSHHHHHHHTTTTCSEEEE
T ss_pred CEEEEECCCH--HHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhc----CCcEEEEccCcchHHHHHhccccCCEEEE
Confidence 3677777763 33333332 578999999998754433333332 25799999998743 3467898887
Q ss_pred ccchhhhCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 143 CEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 143 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
...- ...........+-+.|...+++.
T Consensus 78 ~~~~-----d~~n~~~~~~~r~~~~~~~iia~ 104 (153)
T d1id1a_ 78 LSDN-----DADNAFVVLSAKDMSSDVKTVLA 104 (153)
T ss_dssp CSSC-----HHHHHHHHHHHHHHTSSSCEEEE
T ss_pred cccc-----HHHHHHHHHHHHHhCCCCceEEE
Confidence 5321 22233344445666777777764
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.56 E-value=0.68 Score=36.52 Aligned_cols=75 Identities=13% Similarity=0.189 Sum_probs=58.4
Q ss_pred CCCEEEEECCcccH---HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-----------CC
Q 048309 69 KEHEVLEIGCGWGT---FAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-----------KA 134 (288)
Q Consensus 69 ~~~~vLDiGcG~G~---~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-----------~~ 134 (288)
.|+.+|--|++.|. .+..++++ |++|+.+|.+++.++...+.+...+ .++..+.+|+.+.. ..
T Consensus 6 ~Gkv~lITGas~GIG~~ia~~la~~-G~~V~l~~r~~~~l~~~~~~~~~~~--~~~~~~~~Dvs~~~~v~~~~~~i~~~~ 82 (244)
T d1yb1a_ 6 TGEIVLITGAGHGIGRLTAYEFAKL-KSKLVLWDINKHGLEETAAKCKGLG--AKVHTFVVDCSNREDIYSSAKKVKAEI 82 (244)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHHc
Confidence 57888888888764 45566665 8999999999999988888887766 47999999998742 23
Q ss_pred CCCCEEEEccch
Q 048309 135 KKYDRIISCEMM 146 (288)
Q Consensus 135 ~~fD~I~~~~~l 146 (288)
+..|+++.+..+
T Consensus 83 g~idilinnag~ 94 (244)
T d1yb1a_ 83 GDVSILVNNAGV 94 (244)
T ss_dssp CCCSEEEECCCC
T ss_pred CCCceeEeeccc
Confidence 679998876544
|
| >d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=90.17 E-value=0.23 Score=32.02 Aligned_cols=50 Identities=16% Similarity=0.327 Sum_probs=39.2
Q ss_pred HHHHcCCCCCCEEEEECC--cccHHHHHHHHccCCEEEEEcCCHHHHHHHHH
Q 048309 61 LIEKARVSKEHEVLEIGC--GWGTFAIEVVRQTGCNYTGITLSAEQMKYAEM 110 (288)
Q Consensus 61 l~~~~~~~~~~~vLDiGc--G~G~~~~~la~~~~~~v~giD~s~~~~~~a~~ 110 (288)
+.+....+++.+||-.|. |.|..+.++++..+++|+++.-|++..+.+++
T Consensus 23 ~~~~~~~~~~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s~~k~~~~~~ 74 (77)
T d1o8ca2 23 LEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKS 74 (77)
T ss_dssp HHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHH
T ss_pred HHhhhhccCCCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEECCHHHHHHHHH
Confidence 344445677888987774 45888999988888999999999988887765
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.80 E-value=1 Score=35.30 Aligned_cols=70 Identities=13% Similarity=0.144 Sum_probs=50.7
Q ss_pred CCCEEEEECCccc---HHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-------CCCCCC
Q 048309 69 KEHEVLEIGCGWG---TFAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-------KAKKYD 138 (288)
Q Consensus 69 ~~~~vLDiGcG~G---~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-------~~~~fD 138 (288)
.|+++|-.|++.| ..+..+++. |++|+.+|.+++.++...+.. .++..++.|+.+.. .-++.|
T Consensus 6 ~GK~~lITGas~GIG~aia~~la~~-G~~V~~~~r~~~~l~~~~~~~------~~~~~~~~Dv~d~~~v~~~~~~~g~iD 78 (244)
T d1pr9a_ 6 AGRRVLVTGAGKGIGRGTVQALHAT-GARVVAVSRTQADLDSLVREC------PGIEPVCVDLGDWEATERALGSVGPVD 78 (244)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHS------TTCEEEECCTTCHHHHHHHHTTCCCCC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHc-CCEEEEEECCHHHHHHHHHhc------CCCeEEEEeCCCHHHHHHHHHHhCCce
Confidence 6889999998776 345556664 889999999998776554332 25788889997642 336899
Q ss_pred EEEEccc
Q 048309 139 RIISCEM 145 (288)
Q Consensus 139 ~I~~~~~ 145 (288)
+++.+..
T Consensus 79 ilVnnAg 85 (244)
T d1pr9a_ 79 LLVNNAA 85 (244)
T ss_dssp EEEECCC
T ss_pred EEEeccc
Confidence 9987653
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=89.78 E-value=0.85 Score=36.20 Aligned_cols=74 Identities=16% Similarity=0.162 Sum_probs=56.3
Q ss_pred CCCEEEEECCcccH---HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC------------C
Q 048309 69 KEHEVLEIGCGWGT---FAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP------------K 133 (288)
Q Consensus 69 ~~~~vLDiGcG~G~---~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~------------~ 133 (288)
+|+++|-.|++.|. .+..+++. |++|+.++.+++.++.+.+.+...+. ++.++..|+.+.. .
T Consensus 5 ~gK~alITGas~GIG~aia~~la~~-G~~V~i~~r~~~~l~~~~~~~~~~~~--~~~~~~~D~s~~~~~~~~~~~~~~~~ 81 (258)
T d1ae1a_ 5 KGTTALVTGGSKGIGYAIVEELAGL-GARVYTCSRNEKELDECLEIWREKGL--NVEGSVCDLLSRTERDKLMQTVAHVF 81 (258)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCC--CceEEEeecCCHHHHHHHHHHHHHHh
Confidence 57899999987653 44555664 88999999999998888888887764 6888999997632 2
Q ss_pred CCCCCEEEEccc
Q 048309 134 AKKYDRIISCEM 145 (288)
Q Consensus 134 ~~~fD~I~~~~~ 145 (288)
.+..|+++.+..
T Consensus 82 ~g~idilinnag 93 (258)
T d1ae1a_ 82 DGKLNILVNNAG 93 (258)
T ss_dssp TSCCCEEEECCC
T ss_pred CCCcEEEecccc
Confidence 357888887543
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=89.43 E-value=0.93 Score=35.94 Aligned_cols=75 Identities=17% Similarity=0.251 Sum_probs=56.7
Q ss_pred CCCEEEEECCcccH---HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-----------CC
Q 048309 69 KEHEVLEIGCGWGT---FAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-----------KA 134 (288)
Q Consensus 69 ~~~~vLDiGcG~G~---~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-----------~~ 134 (288)
.|+++|--|++.|. .+..+++. |++|+.+|.+++.++.+.+.+...+...++..+.+|+.+.. .-
T Consensus 3 ~gK~alITGas~GIG~aia~~la~~-Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~ 81 (258)
T d1iy8a_ 3 TDRVVLITGGGSGLGRATAVRLAAE-GAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERF 81 (258)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHHh
Confidence 47788888887663 45666665 89999999999998888777766554457889999997743 12
Q ss_pred CCCCEEEEcc
Q 048309 135 KKYDRIISCE 144 (288)
Q Consensus 135 ~~fD~I~~~~ 144 (288)
+..|+++.+.
T Consensus 82 G~iDiLVnnA 91 (258)
T d1iy8a_ 82 GRIDGFFNNA 91 (258)
T ss_dssp SCCSEEEECC
T ss_pred CCCCEEEECC
Confidence 6899998764
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=89.14 E-value=0.9 Score=36.04 Aligned_cols=73 Identities=23% Similarity=0.357 Sum_probs=56.1
Q ss_pred CCCEEEEECCcccH---HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-----------CC
Q 048309 69 KEHEVLEIGCGWGT---FAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-----------KA 134 (288)
Q Consensus 69 ~~~~vLDiGcG~G~---~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-----------~~ 134 (288)
.|+.+|-.|.+.|. .+..|++. |++|+.+|.+++.++.+.+.++..+. ++..+.+|+.+.. .-
T Consensus 4 ~gK~alITGas~GIG~aia~~la~~-Ga~V~~~~r~~~~l~~~~~~~~~~g~--~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (260)
T d1zema1 4 NGKVCLVTGAGGNIGLATALRLAEE-GTAIALLDMNREALEKAEASVREKGV--EARSYVCDVTSEEAVIGTVDSVVRDF 80 (260)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHTTTS--CEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 57889988876653 45566664 89999999999999988888877663 6899999997642 12
Q ss_pred CCCCEEEEcc
Q 048309 135 KKYDRIISCE 144 (288)
Q Consensus 135 ~~fD~I~~~~ 144 (288)
+..|+++.+.
T Consensus 81 g~iDilVnna 90 (260)
T d1zema1 81 GKIDFLFNNA 90 (260)
T ss_dssp SCCCEEEECC
T ss_pred CCCCeehhhh
Confidence 6899988753
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=88.56 E-value=0.47 Score=35.88 Aligned_cols=82 Identities=11% Similarity=0.035 Sum_probs=54.8
Q ss_pred HHHHHcC-CCCCCEEEEECCccc--H-HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC---
Q 048309 60 LLIEKAR-VSKEHEVLEIGCGWG--T-FAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP--- 132 (288)
Q Consensus 60 ~l~~~~~-~~~~~~vLDiGcG~G--~-~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~--- 132 (288)
.+.+... .-+++++|=.|++.| . .+..+++ .+++|+.++.+++..+...+.+.... ++.+...|..+..
T Consensus 12 ~~~~~~~~~l~gK~vlItGasgGIG~~ia~~la~-~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~d~~~~~~~~ 87 (191)
T d1luaa1 12 LVVKAAGGSVKGKKAVVLAGTGPVGMRSAALLAG-EGAEVVLCGRKLDKAQAAADSVNKRF---KVNVTAAETADDASRA 87 (191)
T ss_dssp HHHHHTTSCCTTCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESSHHHHHHHHHHHHHHH---TCCCEEEECCSHHHHH
T ss_pred HHHHHcCCCCCCCEEEEECCCHHHHHHHHHHHHh-hccchhhcccchHHHHHHHHHHHhcc---chhhhhhhcccHHHHH
Confidence 3444432 346889998886554 3 3445555 48899999999998887777766542 3456666665533
Q ss_pred -CCCCCCEEEEccc
Q 048309 133 -KAKKYDRIISCEM 145 (288)
Q Consensus 133 -~~~~fD~I~~~~~ 145 (288)
.-+..|+++.+..
T Consensus 88 ~~~~~iDilin~Ag 101 (191)
T d1luaa1 88 EAVKGAHFVFTAGA 101 (191)
T ss_dssp HHTTTCSEEEECCC
T ss_pred HHhcCcCeeeecCc
Confidence 3467899998754
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=87.64 E-value=1 Score=35.95 Aligned_cols=75 Identities=17% Similarity=0.271 Sum_probs=56.8
Q ss_pred CCCEEEEECCcccH---HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCC-CceEEEEcccCCCC-----------C
Q 048309 69 KEHEVLEIGCGWGT---FAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQ-DHIRLYLCDYRQLP-----------K 133 (288)
Q Consensus 69 ~~~~vLDiGcG~G~---~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~-~~v~~~~~d~~~~~-----------~ 133 (288)
.|+++|--|++.|. .+..+++. |++|+.+|.+++.++.+.+.+...+.+ .++..+.+|+.+.. .
T Consensus 3 ~gK~alITGas~GIG~aia~~la~~-Ga~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 81 (274)
T d1xhla_ 3 SGKSVIITGSSNGIGRSAAVIFAKE-GAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAK 81 (274)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHHH
Confidence 57788888877653 44555654 899999999999998888888777653 46899999997742 1
Q ss_pred CCCCCEEEEcc
Q 048309 134 AKKYDRIISCE 144 (288)
Q Consensus 134 ~~~fD~I~~~~ 144 (288)
-+..|+++.+.
T Consensus 82 ~G~iDilVnnA 92 (274)
T d1xhla_ 82 FGKIDILVNNA 92 (274)
T ss_dssp HSCCCEEEECC
T ss_pred cCCceEEEeec
Confidence 25889999864
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=87.63 E-value=1.3 Score=34.97 Aligned_cols=74 Identities=12% Similarity=0.152 Sum_probs=56.0
Q ss_pred CCCEEEEECCcccH---HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC------------C
Q 048309 69 KEHEVLEIGCGWGT---FAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP------------K 133 (288)
Q Consensus 69 ~~~~vLDiGcG~G~---~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~------------~ 133 (288)
.|+++|-.|++.|. .+..+++. |++|+.+|.+++.++.+.+.+...+ .++.++..|+.+.. .
T Consensus 7 ~GK~alITGas~GIG~aia~~la~~-Ga~V~~~~r~~~~l~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 83 (259)
T d2ae2a_ 7 EGCTALVTGGSRGIGYGIVEELASL-GASVYTCSRNQKELNDCLTQWRSKG--FKVEASVCDLSSRSERQELMNTVANHF 83 (259)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcC--CCceEEEeeCCCHHHHHHHHHHHHHHh
Confidence 57889988877653 45555654 8999999999999988888887766 36889999997631 2
Q ss_pred CCCCCEEEEccc
Q 048309 134 AKKYDRIISCEM 145 (288)
Q Consensus 134 ~~~fD~I~~~~~ 145 (288)
.+..|+++.+..
T Consensus 84 ~~~idilvnnAG 95 (259)
T d2ae2a_ 84 HGKLNILVNNAG 95 (259)
T ss_dssp TTCCCEEEECCC
T ss_pred CCCceEEEECCc
Confidence 347999998653
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=86.89 E-value=1.1 Score=35.31 Aligned_cols=75 Identities=17% Similarity=0.205 Sum_probs=54.7
Q ss_pred CCCEEEEECCcccH---HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-----------CC
Q 048309 69 KEHEVLEIGCGWGT---FAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-----------KA 134 (288)
Q Consensus 69 ~~~~vLDiGcG~G~---~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-----------~~ 134 (288)
.|+++|--|++.|. .+..+++ .|++|+.+|.+++.++.+.+.++..+ .++.++.+|+.+.. .-
T Consensus 10 ~gK~alITGas~GIG~aia~~la~-~Ga~V~~~~r~~~~~~~~~~~l~~~g--~~~~~~~~Dvs~~~~~~~~~~~~~~~~ 86 (255)
T d1fmca_ 10 DGKCAIITGAGAGIGKEIAITFAT-AGASVVVSDINADAANHVVDEIQQLG--GQAFACRCDITSEQELSALADFAISKL 86 (255)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHT-TTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHHcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 57788877765543 2344444 48999999999999988888888766 46889999998742 12
Q ss_pred CCCCEEEEccch
Q 048309 135 KKYDRIISCEMM 146 (288)
Q Consensus 135 ~~fD~I~~~~~l 146 (288)
+..|+++.+...
T Consensus 87 g~iDilvnnAG~ 98 (255)
T d1fmca_ 87 GKVDILVNNAGG 98 (255)
T ss_dssp SSCCEEEECCCC
T ss_pred CCCCEeeeCCcC
Confidence 689999886533
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.84 E-value=1.1 Score=35.33 Aligned_cols=78 Identities=14% Similarity=0.164 Sum_probs=55.8
Q ss_pred CCCEEEEECCcccH---HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-----------CC
Q 048309 69 KEHEVLEIGCGWGT---FAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-----------KA 134 (288)
Q Consensus 69 ~~~~vLDiGcG~G~---~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-----------~~ 134 (288)
.|+.+|--|++.|. .+..+++ .|++|+.+|.+++.++.+.+.+.+..-..++.++..|+.+.. .-
T Consensus 2 ~GKvalITGas~GIG~aia~~la~-~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (254)
T d2gdza1 2 NGKVALVTGAAQGIGRAFAEALLL-KGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHF 80 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHHc
Confidence 46788888876653 3444555 489999999999988877776655433357899999998743 12
Q ss_pred CCCCEEEEccchh
Q 048309 135 KKYDRIISCEMME 147 (288)
Q Consensus 135 ~~fD~I~~~~~l~ 147 (288)
+..|+++.+....
T Consensus 81 G~iDilVnnAg~~ 93 (254)
T d2gdza1 81 GRLDILVNNAGVN 93 (254)
T ss_dssp SCCCEEEECCCCC
T ss_pred CCcCeeccccccc
Confidence 6899999876543
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=86.74 E-value=1.2 Score=35.58 Aligned_cols=75 Identities=19% Similarity=0.240 Sum_probs=56.2
Q ss_pred CCCEEEEECCcccH---HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCC-CceEEEEcccCCCC-----------C
Q 048309 69 KEHEVLEIGCGWGT---FAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQ-DHIRLYLCDYRQLP-----------K 133 (288)
Q Consensus 69 ~~~~vLDiGcG~G~---~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~-~~v~~~~~d~~~~~-----------~ 133 (288)
.++++|-.|++.|. .+..+++. |++|+.+|.+++.++.+.+.+++.+.. .++..+.+|+.+.. .
T Consensus 4 ~gK~alVTGas~GIG~aia~~la~~-Ga~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 82 (272)
T d1xkqa_ 4 SNKTVIITGSSNGIGRTTAILFAQE-GANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQ 82 (272)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCcHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 57788888876652 44555654 899999999999999888888776542 46899999997732 1
Q ss_pred CCCCCEEEEcc
Q 048309 134 AKKYDRIISCE 144 (288)
Q Consensus 134 ~~~fD~I~~~~ 144 (288)
-+..|+++.+.
T Consensus 83 ~g~iDilvnnA 93 (272)
T d1xkqa_ 83 FGKIDVLVNNA 93 (272)
T ss_dssp HSCCCEEEECC
T ss_pred hCCceEEEeCC
Confidence 26799998764
|
| >d1rjda_ c.66.1.37 (A:) Leucine carboxy methyltransferase Ppm1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Leucine carboxy methyltransferase Ppm1 domain: Leucine carboxy methyltransferase Ppm1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.20 E-value=2.4 Score=34.85 Aligned_cols=107 Identities=17% Similarity=0.238 Sum_probs=69.9
Q ss_pred CCCEEEEECCcccHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcC--------------------CCCceEEEEcc
Q 048309 69 KEHEVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQMKYAEMKVNEAG--------------------LQDHIRLYLCD 127 (288)
Q Consensus 69 ~~~~vLDiGcG~G~~~~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~g--------------------~~~~v~~~~~d 127 (288)
+...|+-+|||.=.....+... ++..++=||. |+.++.=++.+.+.. ..++...+..|
T Consensus 96 ~~~QVV~LGaG~DTr~~Rl~~~~~~~~~~EvD~-p~vi~~K~~~i~~~~~l~~~l~~~~~~~~~~~~~~~s~~y~lv~~D 174 (328)
T d1rjda_ 96 EKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACD 174 (328)
T ss_dssp SSEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECC
T ss_pred CCcEEEEeCCccchHHHHhhccCCCcEEEECCc-HHHHHHHHHHHHhchhhhhhccccccccccccccCCCCCeEEEecC
Confidence 4568999999987776666544 4445556664 555544444333210 12467888888
Q ss_pred cCCCC----------CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeec
Q 048309 128 YRQLP----------KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSS 177 (288)
Q Consensus 128 ~~~~~----------~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (288)
+.+.. .....-++++-+++.+++++...++++.+.+.... |.+++-+..
T Consensus 175 L~d~~~~~~l~~~~~d~~~PTl~iaE~vl~Yl~~~~~~~li~~~~~~f~~-~~~i~YE~i 233 (328)
T d1rjda_ 175 LNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKFSH-GLWISYDPI 233 (328)
T ss_dssp TTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCSS-EEEEEEEEC
T ss_pred CCCcHhhHHHHHccCCCCCCeEEEEeeehhcCCHHHHHHHHHHHHHhCCC-ceEEEeccC
Confidence 87742 11233478888999999989999999998888765 555554544
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=86.19 E-value=0.14 Score=40.97 Aligned_cols=53 Identities=13% Similarity=0.171 Sum_probs=39.4
Q ss_pred eEEEEcccCCCC---CCCCCCEEEEccchh-----------hhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 121 IRLYLCDYRQLP---KAKKYDRIISCEMME-----------AVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 121 v~~~~~d~~~~~---~~~~fD~I~~~~~l~-----------~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
-.++++|..+.- +++++|+|++..... ++ +.....+.++.++|+|+|.+++..
T Consensus 5 ~~~~~~D~le~l~~l~d~SIDliitDPPYn~~~~~~~~~~~y~--~~~~~~~~e~~rvLk~~G~~~~~~ 71 (279)
T d1eg2a_ 5 HVYDVCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYI--GWAKRWLAEAERVLSPTGSIAIFG 71 (279)
T ss_dssp EEEEECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHH--HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ceEEechHHHHHhhCcCCCccEEEECCCCCCCcccccCHHHHH--HHHHHHHHHHHHHhCCCccEEEec
Confidence 356777876642 678999999986532 22 345778899999999999999854
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.03 E-value=3.3 Score=32.14 Aligned_cols=69 Identities=13% Similarity=0.132 Sum_probs=48.7
Q ss_pred CCCEEEEECCcccH---HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-------CCCCCC
Q 048309 69 KEHEVLEIGCGWGT---FAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-------KAKKYD 138 (288)
Q Consensus 69 ~~~~vLDiGcG~G~---~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-------~~~~fD 138 (288)
.|+++|-.|++.|. .+..+++ .|++|+.+|.+++.++...+. . .++..+..|+.+.. .-++.|
T Consensus 4 ~GK~alITGas~GIG~aia~~la~-~Ga~V~~~~r~~~~l~~~~~~---~---~~~~~~~~Dv~~~~~v~~~~~~~g~iD 76 (242)
T d1cyda_ 4 SGLRALVTGAGKGIGRDTVKALHA-SGAKVVAVTRTNSDLVSLAKE---C---PGIEPVCVDLGDWDATEKALGGIGPVD 76 (242)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHH---S---TTCEEEECCTTCHHHHHHHHTTCCCCS
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHh---c---CCCeEEEEeCCCHHHHHHHHHHcCCCe
Confidence 57889988877653 3455555 489999999998776554433 2 25788899997643 236899
Q ss_pred EEEEcc
Q 048309 139 RIISCE 144 (288)
Q Consensus 139 ~I~~~~ 144 (288)
+++.+.
T Consensus 77 ilVnnA 82 (242)
T d1cyda_ 77 LLVNNA 82 (242)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 998764
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=85.56 E-value=2.2 Score=33.46 Aligned_cols=72 Identities=19% Similarity=0.264 Sum_probs=53.5
Q ss_pred CCEEEEECCcccH---HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-----------CCC
Q 048309 70 EHEVLEIGCGWGT---FAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-----------KAK 135 (288)
Q Consensus 70 ~~~vLDiGcG~G~---~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-----------~~~ 135 (288)
|+.+|--|++.|. .+..|+++ |++|+.+|.+++.++.+.+.++..+. ++.++.+|+.+.. .-+
T Consensus 2 gKValITGas~GIG~aia~~la~~-Ga~V~i~~r~~~~l~~~~~~l~~~g~--~~~~~~~Dvs~~~~v~~~~~~~~~~~g 78 (257)
T d2rhca1 2 SEVALVTGATSGIGLEIARRLGKE-GLRVFVCARGEEGLRTTLKELREAGV--EADGRTCDVRSVPEIEALVAAVVERYG 78 (257)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEeecCCHHHHHHHHHHHHHHhC
Confidence 4566777766543 34555554 89999999999999888888877764 6899999997742 236
Q ss_pred CCCEEEEcc
Q 048309 136 KYDRIISCE 144 (288)
Q Consensus 136 ~fD~I~~~~ 144 (288)
+.|+++.+.
T Consensus 79 ~iDilVnnA 87 (257)
T d2rhca1 79 PVDVLVNNA 87 (257)
T ss_dssp SCSEEEECC
T ss_pred CCCEEEecc
Confidence 899998764
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=85.34 E-value=3.2 Score=27.36 Aligned_cols=70 Identities=13% Similarity=0.266 Sum_probs=42.3
Q ss_pred CCCCEEEEEC-CcccHHH--HHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCEEEEcc
Q 048309 68 SKEHEVLEIG-CGWGTFA--IEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCE 144 (288)
Q Consensus 68 ~~~~~vLDiG-cG~G~~~--~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~~~~ 144 (288)
...+++.=|| ||+|..+ ..+.+ .|.+|+|.|..... .. +.+.+.| +.+..+...+.- ...|+|+...
T Consensus 6 ~~~~~ihfiGigG~GMs~LA~~L~~-~G~~VsGSD~~~~~--~~-~~L~~~G----i~v~~g~~~~~i--~~~d~vV~S~ 75 (96)
T d1p3da1 6 RRVQQIHFIGIGGAGMSGIAEILLN-EGYQISGSDIADGV--VT-QRLAQAG----AKIYIGHAEEHI--EGASVVVVSS 75 (96)
T ss_dssp TTCCEEEEETTTSTTHHHHHHHHHH-HTCEEEEEESCCSH--HH-HHHHHTT----CEEEESCCGGGG--TTCSEEEECT
T ss_pred hhCCEEEEEEECHHHHHHHHHHHHh-CCCEEEEEeCCCCh--hh-hHHHHCC----CeEEECCccccC--CCCCEEEECC
Confidence 3556888888 6677544 44444 58999999975322 12 2334445 455555443322 4689998876
Q ss_pred chh
Q 048309 145 MME 147 (288)
Q Consensus 145 ~l~ 147 (288)
.+.
T Consensus 76 AI~ 78 (96)
T d1p3da1 76 AIK 78 (96)
T ss_dssp TSC
T ss_pred CcC
Confidence 654
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=85.04 E-value=1.4 Score=34.90 Aligned_cols=73 Identities=18% Similarity=0.170 Sum_probs=52.7
Q ss_pred CCCEEEEECCcccH---HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-----------CC
Q 048309 69 KEHEVLEIGCGWGT---FAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-----------KA 134 (288)
Q Consensus 69 ~~~~vLDiGcG~G~---~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-----------~~ 134 (288)
.++.+|-.|++.|. .+..+++ .|++|+.+|.+++.++.+.+.+... .++.++..|+.+.. .-
T Consensus 5 ~gKvalITGas~GIG~aia~~la~-~Ga~V~i~~r~~~~~~~~~~~l~~~---~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (268)
T d2bgka1 5 QDKVAIITGGAGGIGETTAKLFVR-YGAKVVIADIADDHGQKVCNNIGSP---DVISFVHCDVTKDEDVRNLVDTTIAKH 80 (268)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHCCT---TTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHhcCC---CceEEEEccCCCHHHHHHHHHHHHHHc
Confidence 57889988977653 3445555 4899999999998887776665433 46888999997642 12
Q ss_pred CCCCEEEEccc
Q 048309 135 KKYDRIISCEM 145 (288)
Q Consensus 135 ~~fD~I~~~~~ 145 (288)
+..|+++.+..
T Consensus 81 g~iD~lVnnAG 91 (268)
T d2bgka1 81 GKLDIMFGNVG 91 (268)
T ss_dssp SCCCEEEECCC
T ss_pred CCcceeccccc
Confidence 68999997653
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=84.86 E-value=2 Score=33.69 Aligned_cols=75 Identities=15% Similarity=0.164 Sum_probs=54.9
Q ss_pred CCCEEEEECCcccH---HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-----------CC
Q 048309 69 KEHEVLEIGCGWGT---FAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-----------KA 134 (288)
Q Consensus 69 ~~~~vLDiGcG~G~---~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-----------~~ 134 (288)
.++.+|-.|++.|. .+..|++ .|++|+.+|.+++.++.+.+.++..+ .++..+..|+.+.. .-
T Consensus 9 enKvalITGas~GIG~a~a~~la~-~Ga~V~~~~r~~~~l~~~~~~l~~~g--~~~~~~~~Dvt~~~~v~~~~~~~~~~~ 85 (251)
T d2c07a1 9 ENKVALVTGAGRGIGREIAKMLAK-SVSHVICISRTQKSCDSVVDEIKSFG--YESSGYAGDVSKKEEISEVINKILTEH 85 (251)
T ss_dssp SSCEEEEESTTSHHHHHHHHHHTT-TSSEEEEEESSHHHHHHHHHHHHTTT--CCEEEEECCTTCHHHHHHHHHHHHHHC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHH-cCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHhc
Confidence 46778877876552 2333444 58899999999999988888887766 36899999998742 23
Q ss_pred CCCCEEEEccch
Q 048309 135 KKYDRIISCEMM 146 (288)
Q Consensus 135 ~~fD~I~~~~~l 146 (288)
+..|+++.+...
T Consensus 86 g~iDilvnnag~ 97 (251)
T d2c07a1 86 KNVDILVNNAGI 97 (251)
T ss_dssp SCCCEEEECCCC
T ss_pred CCceeeeecccc
Confidence 689999886543
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=84.85 E-value=1.9 Score=34.06 Aligned_cols=75 Identities=20% Similarity=0.174 Sum_probs=56.7
Q ss_pred CCCEEEEECCcccH---HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC------------C
Q 048309 69 KEHEVLEIGCGWGT---FAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP------------K 133 (288)
Q Consensus 69 ~~~~vLDiGcG~G~---~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~------------~ 133 (288)
+++++|-.|++.|. .+..+++. |++|+.+|.+++.++.+.+.+...+. ++..+..|+.+.. .
T Consensus 7 kgK~alVTGas~GIG~aiA~~la~~-Ga~V~~~~r~~~~l~~~~~~~~~~~~--~~~~~~~Dv~~~~~v~~~~~~~~~~~ 83 (259)
T d1xq1a_ 7 KAKTVLVTGGTKGIGHAIVEEFAGF-GAVIHTCARNEYELNECLSKWQKKGF--QVTGSVCDASLRPEREKLMQTVSSMF 83 (259)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCC--ceEEEeccCCCHHHHHHHHHHHHHHh
Confidence 57888888877654 45555654 88999999999999888887777653 6899999997632 1
Q ss_pred CCCCCEEEEccch
Q 048309 134 AKKYDRIISCEMM 146 (288)
Q Consensus 134 ~~~fD~I~~~~~l 146 (288)
.+..|+++.+...
T Consensus 84 ~g~idilvnnAG~ 96 (259)
T d1xq1a_ 84 GGKLDILINNLGA 96 (259)
T ss_dssp TTCCSEEEEECCC
T ss_pred CCCcccccccccc
Confidence 3679999987544
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=84.73 E-value=1.8 Score=34.16 Aligned_cols=76 Identities=20% Similarity=0.219 Sum_probs=55.4
Q ss_pred CCCEEEEECCcccH---HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCC-CceEEEEcccCCCC-----------C
Q 048309 69 KEHEVLEIGCGWGT---FAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQ-DHIRLYLCDYRQLP-----------K 133 (288)
Q Consensus 69 ~~~~vLDiGcG~G~---~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~-~~v~~~~~d~~~~~-----------~ 133 (288)
.++.+|-.|++.|. .+..+++ .|++|+.+|.+++.++.+.+.+...+.+ .++.++.+|+.+.. .
T Consensus 4 ~gKvalVTGas~GIG~aia~~la~-~Ga~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~ 82 (264)
T d1spxa_ 4 AEKVAIITGSSNGIGRATAVLFAR-EGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGK 82 (264)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCCHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 56778877766543 3445555 4899999999999998888887776542 46899999997642 1
Q ss_pred CCCCCEEEEccc
Q 048309 134 AKKYDRIISCEM 145 (288)
Q Consensus 134 ~~~fD~I~~~~~ 145 (288)
-+..|+++.+..
T Consensus 83 ~g~iDilvnnAG 94 (264)
T d1spxa_ 83 FGKLDILVNNAG 94 (264)
T ss_dssp HSCCCEEEECCC
T ss_pred hCCCCEeecccc
Confidence 268999987643
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=84.27 E-value=2.5 Score=33.16 Aligned_cols=104 Identities=18% Similarity=0.163 Sum_probs=67.2
Q ss_pred CCCCEEEEECCccc---HHHHHHHHccCCEEEEE-cCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC-----------
Q 048309 68 SKEHEVLEIGCGWG---TFAIEVVRQTGCNYTGI-TLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP----------- 132 (288)
Q Consensus 68 ~~~~~vLDiGcG~G---~~~~~la~~~~~~v~gi-D~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~----------- 132 (288)
..|+++|-.|++.| ..+..+++. |++|+.. .-+++..+.+.+.+...|. ++..+..|+.+..
T Consensus 4 L~GK~alITGas~GIG~aia~~la~~-G~~Vvi~~~~~~~~~~~~~~~~~~~g~--~~~~~~~D~~~~~~v~~~~~~~~~ 80 (259)
T d1ja9a_ 4 LAGKVALTTGAGRGIGRGIAIELGRR-GASVVVNYGSSSKAAEEVVAELKKLGA--QGVAIQADISKPSEVVALFDKAVS 80 (259)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESSCHHHHHHHHHHHHHTTC--CEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHc-CCEEEEEcCCChHHHHHHHHHHHHcCC--CceEecCCCCCHHHHHHHHHHHHH
Confidence 46889997776655 345555554 8888764 6777778888888887774 7899999997632
Q ss_pred CCCCCCEEEEccchhhh------CHhhHHH-----------HHHHHhcccccCcEEEEE
Q 048309 133 KAKKYDRIISCEMMEAV------GHEYMEE-----------YFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 133 ~~~~fD~I~~~~~l~~~------~~~~~~~-----------~l~~~~~~LkpgG~l~~~ 174 (288)
..+..|+++.+....+. +.+.... ..+.+...|+.+|..++.
T Consensus 81 ~~g~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~iii 139 (259)
T d1ja9a_ 81 HFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILT 139 (259)
T ss_dssp HHSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred HcCCCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCCccccc
Confidence 22578988876544322 2222222 344555666666666554
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=83.91 E-value=1.9 Score=34.47 Aligned_cols=74 Identities=15% Similarity=0.233 Sum_probs=52.8
Q ss_pred CCCEEEEECCccc---HHHHHHHHccCCEEEEEcCCHHHHHHHHHHHH-HcCCCCceEEEEcccCCCC-----------C
Q 048309 69 KEHEVLEIGCGWG---TFAIEVVRQTGCNYTGITLSAEQMKYAEMKVN-EAGLQDHIRLYLCDYRQLP-----------K 133 (288)
Q Consensus 69 ~~~~vLDiGcG~G---~~~~~la~~~~~~v~giD~s~~~~~~a~~~~~-~~g~~~~v~~~~~d~~~~~-----------~ 133 (288)
.|+++|-.|++.| ..+..|++ .|++|+.+|.++..++.+.+.+. ..+ .++.++..|+.+.. .
T Consensus 24 ~gK~alITGas~GIG~aiA~~la~-~Ga~Vii~~r~~~~l~~~~~~l~~~~g--~~~~~~~~D~~~~~~v~~~~~~~~~~ 100 (294)
T d1w6ua_ 24 QGKVAFITGGGTGLGKGMTTLLSS-LGAQCVIASRKMDVLKATAEQISSQTG--NKVHAIQCDVRDPDMVQNTVSELIKV 100 (294)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHHHS--SCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHH-cCCEEEEEECCHHHHHHHHHHHHHhcC--CceEEEEecccChHHHHHHhhhhhhh
Confidence 5688998887765 34455555 48999999999988776655543 333 46889999997642 2
Q ss_pred CCCCCEEEEccc
Q 048309 134 AKKYDRIISCEM 145 (288)
Q Consensus 134 ~~~fD~I~~~~~ 145 (288)
.+..|+++.+..
T Consensus 101 ~g~iDilvnnAg 112 (294)
T d1w6ua_ 101 AGHPNIVINNAA 112 (294)
T ss_dssp TCSCSEEEECCC
T ss_pred ccccchhhhhhh
Confidence 368999988653
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=83.03 E-value=0.36 Score=39.11 Aligned_cols=54 Identities=17% Similarity=0.316 Sum_probs=41.0
Q ss_pred ceEEEEcccCCCC---CCCCCCEEEEccchh--------------hhCHhhHHHHHHHHhcccccCcEEEEEe
Q 048309 120 HIRLYLCDYRQLP---KAKKYDRIISCEMME--------------AVGHEYMEEYFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 120 ~v~~~~~d~~~~~---~~~~fD~I~~~~~l~--------------~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (288)
+-+++++|..+.- +++++|+|+...... ++ +.+...+.+++++|+|+|.+++..
T Consensus 12 ~~~l~~GD~le~l~~l~~~sVdli~tDPPY~~~~~~~~~~~~~~~y~--~~~~~~l~~~~rvLk~~G~i~i~~ 82 (320)
T d1booa_ 12 NGSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYV--DWFLSFAKVVNKKLKPDGSFVVDF 82 (320)
T ss_dssp SEEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHH--HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCEEEehhHHHHHhhCccCCCCEEEECCCCcCCCCCCCCCCCHHHHH--HHHHHHHHHHHHhCcccCcccccc
Confidence 4588999987632 678999999976431 12 335678999999999999999854
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=82.74 E-value=0.94 Score=34.05 Aligned_cols=101 Identities=15% Similarity=0.221 Sum_probs=65.6
Q ss_pred CEEEEECCcc-cH-HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHc-------CC-C--------CceEEEEcccCCCC
Q 048309 71 HEVLEIGCGW-GT-FAIEVVRQTGCNYTGITLSAEQMKYAEMKVNEA-------GL-Q--------DHIRLYLCDYRQLP 132 (288)
Q Consensus 71 ~~vLDiGcG~-G~-~~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~-------g~-~--------~~v~~~~~d~~~~~ 132 (288)
++|-=||+|+ |. ++..++. .|.+|+.+|.+++.++.+.++++.. +. . .++.. ..+..+
T Consensus 5 ~~vaViGaG~mG~~iA~~~a~-~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~-- 80 (186)
T d1wdka3 5 KQAAVLGAGIMGGGIAYQSAS-KGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRP-TLSYGD-- 80 (186)
T ss_dssp SSEEEECCHHHHHHHHHHHHH-TTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEE-ESSSTT--
T ss_pred CEEEEECcCHHHHHHHHHHHh-CCCeEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeec-cccccc--
Confidence 4677899987 43 3445555 4889999999999998887765422 10 0 11221 122222
Q ss_pred CCCCCCEEEEccchhhhCHhhHHHHHHHHhcccccCcEEEEEeecCC
Q 048309 133 KAKKYDRIISCEMMEAVGHEYMEEYFGCCESLLAKDGLLVLQFSSTP 179 (288)
Q Consensus 133 ~~~~fD~I~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 179 (288)
-...|+|+- .+.+-+ +...++++++-+.+.|+-.+.-.+.+.+
T Consensus 81 -~~~adlViE-av~E~l--~~K~~lf~~l~~~~~~~~IiaSnTS~l~ 123 (186)
T d1wdka3 81 -FGNVDLVVE-AVVENP--KVKQAVLAEVENHVREDAILASNTSTIS 123 (186)
T ss_dssp -GGGCSEEEE-CCCSCH--HHHHHHHHHHHTTSCTTCEEEECCSSSC
T ss_pred -ccccceeee-eecchH--HHHHHHHHHHHhhcCCCeeEEecccccc
Confidence 246788875 455555 6778899999999999987776554433
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Probab=82.16 E-value=5.8 Score=32.03 Aligned_cols=78 Identities=18% Similarity=0.103 Sum_probs=50.1
Q ss_pred CCCCCEEEEECCcccHHHHHHHHc---cCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCC----CCCCCCE
Q 048309 67 VSKEHEVLEIGCGWGTFAIEVVRQ---TGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP----KAKKYDR 139 (288)
Q Consensus 67 ~~~~~~vLDiGcG~G~~~~~la~~---~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~----~~~~fD~ 139 (288)
+++|++||=.|+ +|..+..+++. .|.+|+++.-+....+..+.............++.+|+.+.. .-...|.
T Consensus 8 ~~~gk~VlVTG~-sGfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 86 (342)
T d1y1pa1 8 LPEGSLVLVTGA-NGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAG 86 (342)
T ss_dssp SCTTCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSE
T ss_pred CCCcCEEEEECC-CCHHHHHHHHHHHHCcCEEEEEeCCchhHHHHHHhhhccccccccEEEeccccchhhhhhhcccchh
Confidence 567899997764 47666655553 478999987777666655554444433344566778887643 2245787
Q ss_pred EEEccc
Q 048309 140 IISCEM 145 (288)
Q Consensus 140 I~~~~~ 145 (288)
|+....
T Consensus 87 v~~~a~ 92 (342)
T d1y1pa1 87 VAHIAS 92 (342)
T ss_dssp EEECCC
T ss_pred hhhhcc
Confidence 776543
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=81.55 E-value=0.33 Score=35.42 Aligned_cols=94 Identities=13% Similarity=0.075 Sum_probs=52.5
Q ss_pred CEEEEECCcc-cHH-HHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCceEEEEcccCCCCCCCCCCEEEEccchhh
Q 048309 71 HEVLEIGCGW-GTF-AIEVVRQTGCNYTGITLSAEQMKYAEMKVNEAGLQDHIRLYLCDYRQLPKAKKYDRIISCEMMEA 148 (288)
Q Consensus 71 ~~vLDiGcG~-G~~-~~~la~~~~~~v~giD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~fD~I~~~~~l~~ 148 (288)
++|+=||+|. |.. +..|++ .+.+|+.++.+++..+.. ...+..................+.+|+|+..---
T Consensus 1 MkI~IiGaG~iG~~~a~~L~~-~G~~V~~~~r~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~D~iii~vka-- 73 (167)
T d1ks9a2 1 MKITVLGCGALGQLWLTALCK-QGHEVQGWLRVPQPYCSV----NLVETDGSIFNESLTANDPDFLATSDLLLVTLKA-- 73 (167)
T ss_dssp CEEEEECCSHHHHHHHHHHHH-TTCEEEEECSSCCSEEEE----EEECTTSCEEEEEEEESCHHHHHTCSEEEECSCG--
T ss_pred CEEEEECcCHHHHHHHHHHHH-CCCceEEEEcCHHHhhhh----ccccCCccccccccccchhhhhcccceEEEeecc--
Confidence 4788899986 544 455555 488999999766321100 0001100000000000111123579999875432
Q ss_pred hCHhhHHHHHHHHhcccccCcEEEEE
Q 048309 149 VGHEYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 149 ~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
.+....++.+...+.++..++..
T Consensus 74 ---~~~~~~~~~l~~~~~~~~~Iv~~ 96 (167)
T d1ks9a2 74 ---WQVSDAVKSLASTLPVTTPILLI 96 (167)
T ss_dssp ---GGHHHHHHHHHTTSCTTSCEEEE
T ss_pred ---cchHHHHHhhccccCcccEEeec
Confidence 34578889999999988877764
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=80.59 E-value=3.3 Score=32.66 Aligned_cols=104 Identities=19% Similarity=0.165 Sum_probs=68.2
Q ss_pred CCCEEEEECCcccH---HHHHHHHccCCEEEEEcCC-HHHHHHHHHHHHHcCCCCceEEEEcccCCCC-----------C
Q 048309 69 KEHEVLEIGCGWGT---FAIEVVRQTGCNYTGITLS-AEQMKYAEMKVNEAGLQDHIRLYLCDYRQLP-----------K 133 (288)
Q Consensus 69 ~~~~vLDiGcG~G~---~~~~la~~~~~~v~giD~s-~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-----------~ 133 (288)
.|+++|-.|++.|. .+..++++ |++|+.+|.+ ++.++.+.+.++..+. ++.++..|+.+.. .
T Consensus 17 ~gK~~lITGas~GIG~aia~~la~~-Ga~Vvi~~~~~~~~~~~~~~~~~~~g~--~~~~~~~D~~~~~~v~~~~~~~~~~ 93 (272)
T d1g0oa_ 17 EGKVALVTGAGRGIGREMAMELGRR-GCKVIVNYANSTESAEEVVAAIKKNGS--DAACVKANVGVVEDIVRMFEEAVKI 93 (272)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESSCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHc-CCEEEEEeCCchHHHHHHHHHHHhhCC--ceeeEeCCCCCHHHHHHHHHHHHHH
Confidence 57889988877663 45556664 8899999876 5666777777777664 6899999998732 2
Q ss_pred CCCCCEEEEccchh------hhCHhhHHH-----------HHHHHhcccccCcEEEEEe
Q 048309 134 AKKYDRIISCEMME------AVGHEYMEE-----------YFGCCESLLAKDGLLVLQF 175 (288)
Q Consensus 134 ~~~fD~I~~~~~l~------~~~~~~~~~-----------~l~~~~~~LkpgG~l~~~~ 175 (288)
.+..|+++.+.... ..+.++... +.+.+...|+.+|..++..
T Consensus 94 ~g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~ 152 (272)
T d1g0oa_ 94 FGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMG 152 (272)
T ss_dssp HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEEC
T ss_pred hCCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeecccccccccccccccccc
Confidence 26789998765332 222222222 3556667777777766643
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=80.36 E-value=3.4 Score=32.24 Aligned_cols=74 Identities=20% Similarity=0.294 Sum_probs=53.0
Q ss_pred CCCEEEEECCcccH---HHHHHHHccCCEEEEEcCCHHHHHHHHHHH-HHcCCCCceEEEEcccCCCC-----------C
Q 048309 69 KEHEVLEIGCGWGT---FAIEVVRQTGCNYTGITLSAEQMKYAEMKV-NEAGLQDHIRLYLCDYRQLP-----------K 133 (288)
Q Consensus 69 ~~~~vLDiGcG~G~---~~~~la~~~~~~v~giD~s~~~~~~a~~~~-~~~g~~~~v~~~~~d~~~~~-----------~ 133 (288)
.++++|-.|++.|. .+..+++. |++|+.+|.+++.++.+.+.+ +..+ .++..+.+|+.+.. .
T Consensus 4 ~gK~~lITGas~GIG~aia~~la~~-Ga~V~i~~r~~~~~~~~~~~l~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~ 80 (251)
T d1vl8a_ 4 RGRVALVTGGSRGLGFGIAQGLAEA-GCSVVVASRNLEEASEAAQKLTEKYG--VETMAFRCDVSNYEEVKKLLEAVKEK 80 (251)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHHC--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHHhC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 47789988977653 45556664 899999999998876665544 4444 36888999997632 1
Q ss_pred CCCCCEEEEccc
Q 048309 134 AKKYDRIISCEM 145 (288)
Q Consensus 134 ~~~fD~I~~~~~ 145 (288)
-+..|+++.+..
T Consensus 81 ~g~iDiLVnnAG 92 (251)
T d1vl8a_ 81 FGKLDTVVNAAG 92 (251)
T ss_dssp HSCCCEEEECCC
T ss_pred cCCCCEEEECCC
Confidence 258999998653
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=80.30 E-value=0.28 Score=38.57 Aligned_cols=53 Identities=13% Similarity=0.130 Sum_probs=37.0
Q ss_pred EEEEcccCCCC---CCCCCCEEEEccchhhh--------CH----hhHHHHHHHHhcccccCcEEEEE
Q 048309 122 RLYLCDYRQLP---KAKKYDRIISCEMMEAV--------GH----EYMEEYFGCCESLLAKDGLLVLQ 174 (288)
Q Consensus 122 ~~~~~d~~~~~---~~~~fD~I~~~~~l~~~--------~~----~~~~~~l~~~~~~LkpgG~l~~~ 174 (288)
+++++|..+.- +++++|+|++.....-- +. +.....++++.++|+|||.+++.
T Consensus 6 ~i~~gDcle~l~~lpd~sVdliitdPPY~~~~~~~d~~~~~~~y~~~~~~~~~e~~rvLk~~g~~~~~ 73 (256)
T d1g60a_ 6 KIHQMNCFDFLDQVENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIF 73 (256)
T ss_dssp SEEECCHHHHHHHSCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEeccHHHHHhhCcCCCcCEEEECCCCCCCcCcCcCCCCHHHHHHHHHHHHHHhhhccccCcccccc
Confidence 57788887632 67889999997653210 11 22456788999999999988764
|