Citrus Sinensis ID: 048322

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------50
Protein Sequence
MIQAVLSDAEEKRLTDEAVKMWLDELQDLAYDAEDILDGFGTQALESKLMAKNQDSTGQVLSFIPASLNPNAIMSNYSMGSKIKDITSRLEQLCQDRIELGLQRIAGGASSPTAAAHQRPPSSSVPTERENAREAALCEKLNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPSLGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSYPRLCRLEVDECKELVCRTPIDSKLIKFMTISNSSLDMIGCKGMLYDSQAGSSLPKPMTTTNVLEFGKLLEPGFQILETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPNLTLFPEVGLPSSLLDLYVNNCPRLKKVCKRDQGKEWPKIAHIPWVVIDGKFIYDPELEV
Secondary Structure (PSIPRED)
cHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHccccccEEEcccccccccccccccccccccccHHHHHHHHHcccccccEEEEEEcccccccccHHHHHHHHcccccccccccEEEEccccccccccccccccccEEEEEEEcccccccccccccccccccEEEccccccEEEcccccccccccccccccEEEEccccccccccccccccccccccccccEEEEcccccccccccccccccEEEEEccccccccccccccccEEEEccccccccccccccHHHHHccccccEEEEEcccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccEEEEEccccccccccccccccccEEEEcccccHHHHHcccccccccccccccEEEEccEEEccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHccccccccccEEEEccccccccHHHHccccccHHHHccHHHHHHHHHHHHcEEEEcccccHHHHHHHHHccccEEEEEcHHHHHHHHHHcccccEEEEEEEcccccccccHHHHHHHHHHccccccccEEEEEcccccccccccccccccccEEEEEcccccccccccccccccccEEEEccccccEEccHHHcccccccccccccEEEEcccHHHHHccccccccccccccccccEEEEccccHHcccccccccHcEEEEcccccccccccccccccEEEEEcccccccccccccccHccccccccEEEEccccccccccccccccccHEEEccccccccccccccccccEEEEcccccHcccccccccccHccccccccEEEEcccccccccccccccccccEEEEcccHHHHHHHccccccccccEEEccEEEEcccccccccccc
Coil and Loop (DISEMBL)
MIQAVLSDAEEKRLTDEAVKMWLDELQDLAYDAEDILDGFGTQALESKLMaknqdstgqvlsfipaslnpnaimsnysmgskiKDITSRLEQLCQDRIELGLQriaggassptaaahqrppsssvpterENAREAALCEKLNLHALTlewgsqfdnsrdvaVEEHVLdilqphkcIKKVAIRnyggarfplwigdplfskieflelencnncvslpslgllssLKHLAVKGLKKLKSIEsevygegfsmpfpslkilrfenlpewwhwdtdikgnvhVDIFprlqelsvvkcpklsgklpellpSLEILVSKCEKLVVSLSsyprlcrlevdeckelvcrtpidskLIKFMTIsnssldmigckgmlydsqagsslpkpmtttnvlefgkllepgfQILETLVIgnseqlkpwrqgrglsmgfqrltslqslkiwncpnltlfpevglpsslldlyvnncprlkkvckrdqgkewpkiahipwvvidgkfiydpelev
Flexible Loop (DISEMBL)
miqavlsdaeekrltDEAVKMWLDELQDLAYDAEDILDGFGTQALESKLMAKNQDSTGQVLSFIPASLNPNAIMSNYSMGSKIKDITSRLEQLCQDRIELGLQRIAGGassptaaahqrppsssvptERENAREAALCEKLNLHALTLEWGSQFDNSRDVAVEEHVldilqphkcIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPSLGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSsyprlcrlevdeckelvcrtpidskliKFMTISNSSLDMIGCKGMLYDSQAGSSLPKPMTTTNVLEFGKLLEPGFQILETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPNLTLFPEVGLPSSLLDLYVNNCPRLKKVckrdqgkewpkiahipwvviDGKFIYDPELEV
Low Complexity Region (SEG)
MIQAVLSDAEEKRLTDEAVKMWLDELQDLAYDAEDILDGFGTQALESKLMAKNQDSTGQVLSFIPASLNPNAIMSNYSMGSKIKDITSRLEQLCQDRIELGLQRIAGGASSPTAAAHQRPPSSSVPTERENAREAALCEKLNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVslpslgllsslkhlAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSYPRLCRLEVDECKELVCRTPIDSKLIKFMTISNSSLDMIGCKGMLYDSQAGSSLPKPMTTTNVLEFGKLLEPGFQILETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPNLTLFPEVGLPSSLLDLYVNNCPRLKKVCKRDQGKEWPKIAHIPWVVIDGKFIYDPELEV
Disordered region (IsUnstruct)
****************EAVKMWLDELQDLAYDAEDILDGFGTQALE************QVLSFIPASLNPNAIMSNYSMGSKIKDITSRLEQLCQDRIELGLQRI******************************ALCEKLNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPSLGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSYPRLCRLEVDECKELVCRTPIDSKLIKFMTISNSSLDMIGCKGMLYDS*********MTTTNVLEFGKLLEPGFQILETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPNLTLFPEVGLPSSLLDLYVNNCPRLKKVCKRDQGKEWPKIAHIPWVVIDGKFIYD*****
Disordered Region (DISOPRED)
MIQAVLSDAEEKRLTDEAVKMWLDELQDLAYDAEDILDGFGTQALE****************FIPASLNPNAIMSNYSMGSKIKDITSRLEQLCQDRIELGLQRIAGGASSPTAAAHQRPPSSSVPTERENAREAALCEKLNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPSLGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSYPRLCRLEVDECKELV**************ISNSSLDMIGCKGMLYDSQ***SLPKPMTTTNVLEFGKLLEPGFQILETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPNLTLFPEVGLPSSLLDLYVNNCPRLKKVCKRDQGKEWPKIAHIPWVVIDGKFIYDP****
Disordered Region (DISEMBL)
MIQAVLSDAEEKRLTDEAVKMWLDELQDLAYDAEDILDGFGTQALESKLMAKNQDSTGQVLSFIPASLNPNAIMSNYSMGSKIKDITSRLEQLCQDRIELGLQRIAG**************************EAALCEKLNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPSLGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSYPRLCRLEVDECKELVCRTPIDSKLIKFMTISNSSLDMIGCKGMLYDSQAGSSLPKPMTTTNVLEFGKLLEPGFQILETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPNLTLFPEVGLPSSLLDLYVNNCPRLKKVCKRDQGKEWPKIAHIPWVVIDGKFIYDPELEV
Disordered Region (DISPRO)
MIQAVLSDAEEKRLTDEAVKMWLDELQDLAYDAEDILDGFGTQALESKLMAKNQDSTGQVLSFIPASLNPNAIMSNYSMGSKIKDITSRLEQLCQDRIELGLQRIAGGASSPTAAAHQRPPSSSVPTERENAREAALCEKLNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPSLGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSYPRLCRLEVDECKELVCRTPIDSKLIKFMTISNSSLDMIGCKGMLYDSQAGSSLPKPMTTTNVLEFGKLLEPGFQILETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPNLTLFPEVGLPSSLLDLYVNNCPRLKKVCKRDQGKEWPKIAHIPWVVIDGKFIYD*****
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIQAVLSDAEEKRLTDEAVKMWLDELQDLAYDAEDILDGFGTQALESKLMAKNQDSTGQVLSFIPASLNPNAIMSNYSMGSKIKDITSRLEQLCQDRIELGLQRIAGGASSPTAAAHQRPPSSSVPTERENAREAALCEKLNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPSLGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSYPRLCRLEVDECKELVCRTPIDSKLIKFMTISNSSLDMIGCKGMLYDSQAGSSLPKPMTTTNVLEFGKLLEPGFQILETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPNLTLFPEVGLPSSLLDLYVNNCPRLKKVCKRDQGKEWPKIAHIPWVVIDGKFIYDPELEV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	498	2.2.26 [Sep-21-2011]
Q9LRR4	1054	Putative disease resistan	yes	no	0.411	0.194	0.352	1e-29
Q9LRR5	1424	Putative disease resistan	no	no	0.371	0.129	0.383	6e-25
Q7XA39	988	Putative disease resistan	N/A	no	0.624	0.314	0.282	1e-23
Q7XA42	979	Putative disease resistan	N/A	no	0.620	0.315	0.272	3e-18
Q7XBQ9	970	Disease resistance protei	N/A	no	0.582	0.298	0.272	2e-14
Q7XA40	992	Putative disease resistan	N/A	no	0.612	0.307	0.279	4e-13
Q9SX38	857	Putative disease resistan	no	no	0.222	0.129	0.316	8e-08
A7XGN8	910	Disease susceptibility pr	no	no	0.216	0.118	0.288	5e-06
A9QGV6	910	Inactive disease suscepti	no	no	0.216	0.118	0.288	9e-06
P0C8S1	906	Probable disease resistan	no	no	0.240	0.132	0.274	2e-05

>sp|Q9LRR4|R13L1_ARATH Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=3 SV=1

 Score =  131 bits (330), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 87/247 (35%), Positives = 124/247 (50%), Gaps = 42/247 (17%)

Query: 131 NAREAALCEKLNLHALTLEWGSQFDNSRD------VAVEEHVLDILQPHKCIKKVAIRNY 184
           +A EA L  K +L  +   W +   +S +         E  V + L+PH+ I+K+AI  Y
Sbjct: 716 DAAEANLNSKKHLREIDFVWRTGSSSSENNTNPHRTQNEAEVFEKLRPHRHIEKLAIERY 775

Query: 185 GGARFPLWIGDPLFSKIEFLELENCNNCVSLPSLGLLSSLKHLAVKGLKKLKSIESEVY- 243
            G RFP W+ DP FS+I  + L  C  C SLPSLG L  LK L + G+  L+SI  + Y 
Sbjct: 776 KGRRFPDWLSDPSFSRIVCIRLRECQYCTSLPSLGQLPCLKELHISGMVGLQSIGRKFYF 835

Query: 244 -----GEGFSMPFPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGK 298
                 +    PF SL+ LRF+NLP+W  W  D++     D+FP L++L +++CP+L+G 
Sbjct: 836 SDQQLRDQDQQPFRSLETLRFDNLPDWQEW-LDVRV-TRGDLFPSLKKLFILRCPELTGT 893

Query: 299 LPELLPSLEIL---------------------------VSKCEKLV-VSLSSYPRLCRLE 330
           LP  LPSL  L                            S C+ LV   L+ +  L +LE
Sbjct: 894 LPTFLPSLISLHIYKCGLLDFQPDHHEYSYRNLQTLSIKSSCDTLVKFPLNHFANLDKLE 953

Query: 331 VDECKEL 337
           VD+C  L
Sbjct: 954 VDQCTSL 960

Potential disease resistance protein.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9LRR5|DRL21_ARATH Putative disease resistance protein At3g14460 OS=Arabidopsis thaliana GN=At3g14460 PE=3 SV=1

 Score =  115 bits (289), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 76/198 (38%), Positives = 109/198 (55%), Gaps = 13/198 (6%)

Query: 132 AREAALCEKLNLHALTLEW---GSQFDNSRDVAV---EEHVLDILQPHKCIKKVAIRNYG 185
           A++A L  K  L  L L+W   GS F      A+   ++ VL +L+PH  +K   I +Y 
Sbjct: 711 AKDAGLKRKPFLDGLILKWTVKGSGFVPGSFNALACDQKEVLRMLEPHPHLKTFCIESYQ 770

Query: 186 GARFPLWIGDPLFSKIEFLELENCNNCVSLPSLGLLSSLKHLAVKGLKKLKSIESE-VYG 244
           G  FP W+GD  F  I  + L +CN C+SLP +G L SLK+L+++    L+ +  +  +G
Sbjct: 771 GGAFPKWLGDSSFFGITSVTLSSCNLCISLPPVGQLPSLKYLSIEKFNILQKVGLDFFFG 830

Query: 245 EGFS--MPFPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPEL 302
           E  S  +PF SL+IL+F  +P W  W   I   +   IFP LQ+L + +CP L  K PE 
Sbjct: 831 ENNSRGVPFQSLQILKFYGMPRWDEW---ICPELEDGIFPCLQKLIIQRCPSLRKKFPEG 887

Query: 303 LP-SLEILVSKCEKLVVS 319
           LP S E+ +S C    VS
Sbjct: 888 LPSSTEVTISDCPLRAVS 905

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7XA39|RGA4_SOLBU Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1

 Score =  111 bits (278), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 101/357 (28%), Positives = 173/357 (48%), Gaps = 46/357 (12%)

Query: 134 EAALCEKLNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPLWI 193
           EA L  K NL +L++ W +   N R  + E  VL+ L+PH  +K + I  +GG RFP WI
Sbjct: 665 EANLSAKANLQSLSMSWDNDGPN-RYESKEVKVLEALKPHPNLKYLEIIAFGGFRFPSWI 723

Query: 194 GDPLFSKIEFLELENCNNCVSLPSLGLLSSLKHLAVK-GLKKLKSIESEVYGEGFSM--P 250
              +  K+  + +++C NC+ LP  G L  L++L ++ G  +++ +E +     FS    
Sbjct: 724 NHSVLEKVISVRIKSCKNCLCLPPFGELPCLENLELQNGSAEVEYVEEDDVHSRFSTRRS 783

Query: 251 FPSLKILRFENLPEWWHWDTDIKGNVH---VDIFPRLQELSVVKCPKLSGKLPELLPSLE 307
           FPSLK LR       W + + +KG +     + FP L+E++++ CP         +  LE
Sbjct: 784 FPSLKKLRI------WFFRS-LKGLMKEEGEEKFPMLEEMAILYCPLFVFPTLSSVKKLE 836

Query: 308 ILVSKCEKLVVSLSSYPRLCRLEVDECKELVCRTPIDSKLIKFMTISNSSLDMIGCKGML 367
           +  +   + + S+S+   L  L +             + L + M  S ++L+ +      
Sbjct: 837 VHGNTNTRGLSSISNLSTLTSLRIGANYR-------ATSLPEEMFTSLTNLEFLS----F 885

Query: 368 YDSQAGSSLPKPMTTTNVLEFGKLLEPGFQILETLVIGNSEQLKPWRQGRGLSMGFQRLT 427
           +D +    LP  +T+ N              L+ L I + + L+ + +      G + LT
Sbjct: 886 FDFKNLKDLPTSLTSLNA-------------LKRLQIESCDSLESFPE-----QGLEGLT 927

Query: 428 SLQSLKIWNCPNLTLFPEVGLP--SSLLDLYVNNCPRLKKVCKRDQGKEWPKIAHIP 482
           SL  L +  C  L   PE GL   ++L +L V+ CP ++K C ++ G++W KIAHIP
Sbjct: 928 SLTQLFVKYCKMLKCLPE-GLQHLTALTNLGVSGCPEVEKRCDKEIGEDWHKIAHIP 983

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth.

Solanum bulbocastanum (taxid: 147425)

>sp|Q7XA42|RGA1_SOLBU Putative disease resistance protein RGA1 OS=Solanum bulbocastanum GN=RGA1 PE=2 SV=2

 Score = 93.6 bits (231), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 99/363 (27%), Positives = 165/363 (45%), Gaps = 54/363 (14%)

Query: 131 NAREAALCEKLNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFP 190
           +A+EA L  K NLH+L L W     +  D      VL+ L+PH  +K + I  +GG R P
Sbjct: 662 DAKEANLSAKANLHSLCLSWDLDGKHRYD----SEVLEALKPHSNLKYLEINGFGGIRLP 717

Query: 191 LWIGDPLFSKIEFLELENCNNCVSLPSLGLLSSLKHLAVK-GLKKLKSIESEVYGEGFSM 249
            W+   +   +  + +  C NC  LP  G L  L+ L +  G   ++ +E  V+      
Sbjct: 718 DWMNQSVLKNVVSIRIRGCENCSCLPPFGELPCLESLELHTGSADVEYVEDNVH----PG 773

Query: 250 PFPSLKILRFENLPEWWHWD-TDIKGNVHVD---IFPRLQELSVVKCPKLSGKLPELLPS 305
            FPSL+ L          WD +++KG + ++    FP L+E++   CP         + +
Sbjct: 774 RFPSLRKLVI--------WDFSNLKGLLKMEGEKQFPVLEEMTFYWCPMFVIPTLSSVKT 825

Query: 306 LEILVSKCEKLVVSLSSYPRLCRLEVDECKELVCRTPIDSKLIKFMTISNSSLDMIGCKG 365
           L+++V+    ++ S+S+   L  L++ +  E    T +  ++  F +++N     I    
Sbjct: 826 LKVIVTDA-TVLRSISNLRALTSLDISDNVE---ATSLPEEM--FKSLANLKYLKISFFR 879

Query: 366 MLYDSQAGSSLPKPMTTTNVLEFGKLLEPGFQILETLVIGNSEQLKPWRQGRGLSMGFQR 425
            L +      LP  + + N L+  K     F+  + L     E             G + 
Sbjct: 880 NLKE------LPTSLASLNALKSLK-----FEFCDALESLPEE-------------GVKG 915

Query: 426 LTSLQSLKIWNCPNLTLFPEVGLPS--SLLDLYVNNCPRLKKVCKRDQGKEWPKIAHIPW 483
           LTSL  L + NC  L   PE GL    +L  L +  CP + K C+R  G++W KIAHIP+
Sbjct: 916 LTSLTELSVSNCMMLKCLPE-GLQHLTALTTLTITQCPIVFKRCERGIGEDWHKIAHIPY 974

Query: 484 VVI 486
           + +
Sbjct: 975 LTL 977

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth.

Solanum bulbocastanum (taxid: 147425)

>sp|Q7XBQ9|RGA2_SOLBU Disease resistance protein RGA2 OS=Solanum bulbocastanum GN=RGA2 PE=1 SV=1

 Score = 80.9 bits (198), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 102/374 (27%), Positives = 164/374 (43%), Gaps = 84/374 (22%)

Query: 130 ENAREAALCEKLNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARF 189
           ++A+EA L  K NLH+L++ W + F      + E  VL+ L+PH  +  + I  + G   
Sbjct: 662 KDAKEANLSAKGNLHSLSMSWNN-FGPHIYESEEVKVLEALKPHSNLTSLKIYGFRGIHL 720

Query: 190 PLWIGDPLFSKIEFLELENCNNCVSLPSLGLLSSLK----HLAVKGLKKLKSIESEVYGE 245
           P W+   +   I  + + N  NC  LP  G L  L+    H     ++ ++ ++ +V+  
Sbjct: 721 PEWMNHSVLKNIVSILISNFRNCSCLPPFGDLPCLESLELHWGSADVEYVEEVDIDVHS- 779

Query: 246 GF--SMPFPSLKILRFENLPEWWHWD-TDIKGNVHV---DIFPRLQELSVVKCP--KLSG 297
           GF   + FPSL+ L          WD   +KG +     + FP L+E+ + +CP   LS 
Sbjct: 780 GFPTRIRFPSLRKLDI--------WDFGSLKGLLKKEGEEQFPVLEEMIIHECPFLTLSS 831

Query: 298 KLPELLPSLEILVSKCEKLVVSLSSYPRLCRLEVDECKELVCRTPIDSKLIKFMTISNSS 357
            L   L SL I  +K        +S+P       +  K L          +K++TIS   
Sbjct: 832 NL-RALTSLRICYNKVA------TSFPE------EMFKNLAN--------LKYLTISR-- 868

Query: 358 LDMIGCKGMLYDSQAGSSLPKPMTTTNVLEFGKLLEPGFQI---LETLVIGNSEQLKPWR 414
                C  +         LP  + + N L+  K+     Q+   LE+L            
Sbjct: 869 -----CNNL-------KELPTSLASLNALKSLKI-----QLCCALESLP----------- 900

Query: 415 QGRGLSMGFQRLTSLQSLKIWNCPNLTLFPEVGLP--SSLLDLYVNNCPRLKKVCKRDQG 472
                  G + L+SL  L + +C  L   PE GL   ++L  L +  CP+L K C++  G
Sbjct: 901 -----EEGLEGLSSLTELFVEHCNMLKCLPE-GLQHLTTLTSLKIRGCPQLIKRCEKGIG 954

Query: 473 KEWPKIAHIPWVVI 486
           ++W KI+HIP V I
Sbjct: 955 EDWHKISHIPNVNI 968

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth. Confers a broad resistance to all known races of P.infestans.

Solanum bulbocastanum (taxid: 147425)

>sp|Q7XA40|RGA3_SOLBU Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2

 Score = 76.6 bits (187), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 103/369 (27%), Positives = 159/369 (43%), Gaps = 64/369 (17%)

Query: 132 AREAALCEKLNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPL 191
           A+EA L  K NLH+L++ W      +R  + E  VL+ L+PH  +K + I ++ G   P 
Sbjct: 672 AKEANLSAKANLHSLSMSWDRP---NRYESEEVKVLEALKPHPNLKYLEIIDFCGFCLPD 728

Query: 192 WIGDPLFSKIEFLELENCNNCVSLPSLGLLSSLKHLAVKGLKKLKSIESE-VYGEGF--S 248
           W+   +   +  + +  C NC  LP  G L  L+ L ++      S+E E V   GF   
Sbjct: 729 WMNHSVLKNVVSILISGCENCSCLPPFGELPCLESLELQD----GSVEVEYVEDSGFLTR 784

Query: 249 MPFPSLKILR---FENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPS 305
             FPSL+ L    F NL         +KG    + FP L+E+ +  CP         +  
Sbjct: 785 RRFPSLRKLHIGGFCNLKGLQR----MKG---AEQFPVLEEMKISDCPMFVFPTLSSVKK 837

Query: 306 LEILVSKCEKLVVSLSSYPRLCRLEVDECKELVCRTPIDSKLIKFMTISNSSLDMI-GCK 364
           LEI        + S+S+   L  L                K+    T+++   +M    +
Sbjct: 838 LEIWGEADAGGLSSISNLSTLTSL----------------KIFSNHTVTSLLEEMFKNLE 881

Query: 365 GMLYDS----QAGSSLPKPMTTTNVLEFGKLLEPGF-QILETLVIGNSEQLKPWRQGRGL 419
            ++Y S    +    LP  + + N L   K L+  +   LE+L         P     GL
Sbjct: 882 NLIYLSVSFLENLKELPTSLASLNNL---KCLDIRYCYALESL---------PEEGLEGL 929

Query: 420 SMGFQRLTSLQSLKIWNCPNLTLFPEVGLP--SSLLDLYVNNCPRLKKVCKRDQGKEWPK 477
           S       SL  L + +C  L   PE GL   ++L  L +  CP+L K C++  G++W K
Sbjct: 930 S-------SLTELFVEHCNMLKCLPE-GLQHLTTLTSLKIRGCPQLIKRCEKGIGEDWHK 981

Query: 478 IAHIPWVVI 486
           I+HIP V I
Sbjct: 982 ISHIPNVNI 990

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth.

Solanum bulbocastanum (taxid: 147425)

>sp|Q9SX38|DRL4_ARATH Putative disease resistance protein At1g50180 OS=Arabidopsis thaliana GN=At1g50180 PE=3 SV=2

 Score = 58.9 bits (141), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 38/120 (31%), Positives = 66/120 (55%), Gaps = 9/120 (7%)

Query: 2   IQAVLSDAEEKRLTDEAVKMWLDELQDLAYDAEDILDGFGTQALESKLMAKNQDSTGQVL 61
           +   L DA+EK+   E V+ W+  +++ +YDAEDIL+ F  +A      ++ Q    +VL
Sbjct: 41  LNCFLKDADEKQHESERVRNWVAGIREASYDAEDILEAFFLKA-----ESRKQKGMKRVL 95

Query: 62  SFIPASLNPNAIMSNYSMGSKIKDITSRLEQLCQDRIELGLQRIAG--GASSPTAAAHQR 119
             +   LN    +S +S+GS+I++ITSRL ++    ++ G++   G  G S   +   QR
Sbjct: 96  RRLACILNE--AVSLHSVGSEIREITSRLSKIAASMLDFGIKESMGREGLSLSDSLREQR 153

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|A7XGN8|LOV1B_ARATH Disease susceptibility protein LOV1 OS=Arabidopsis thaliana GN=LOV1 PE=1 SV=1

 Score = 53.1 bits (126), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 59/118 (50%), Gaps = 10/118 (8%)

Query: 2   IQAVLSDAEEKRLTDEAVKMWLDELQDLAYDAEDILDGFGTQALESKLMAKNQDSTGQVL 61
           +Q++L DA+ K+   E V+ +L++++D+ YDAEDI++ F      +K   K      + L
Sbjct: 41  LQSLLKDADAKKHESERVRNFLEDVRDIVYDAEDIIESFLLNEFRTK--EKGIKKHARRL 98

Query: 62  SFIPASLNPNAIMSNYSMGSKIKDITSRLEQLCQDRIELGLQRIAGGASSPTAAAHQR 119
           +          ++      S IK IT ++ ++      LG+Q I  GASS +    QR
Sbjct: 99  ACF--------LVDRRKFASDIKGITKKISEVIGGMKSLGIQEIIDGASSMSLQERQR 148

Confers susceptibility to the fungus Cochliobolus victoriae by conditioning victorin-dependent (victorin is a toxin synthesized by C.victoriae) induction of defense-associated proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|A9QGV6|LOV1C_ARATH Inactive disease susceptibility protein LOV1 OS=Arabidopsis thaliana GN=LOV1 PE=3 SV=1

 Score = 52.4 bits (124), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 59/118 (50%), Gaps = 10/118 (8%)

Query: 2   IQAVLSDAEEKRLTDEAVKMWLDELQDLAYDAEDILDGFGTQALESKLMAKNQDSTGQVL 61
           +Q++L DA+ K+   E V+ +L++++D+ YDAEDI++ F      +K   K      + L
Sbjct: 41  LQSLLKDADAKKHESERVRNFLEDVRDIVYDAEDIIESFLLNEFRAK--EKGIKKHARRL 98

Query: 62  SFIPASLNPNAIMSNYSMGSKIKDITSRLEQLCQDRIELGLQRIAGGASSPTAAAHQR 119
           +          ++      S IK IT ++ ++      LG+Q I  GASS +    QR
Sbjct: 99  ACF--------LVDRRKFDSDIKGITKKISEVIGGMKSLGIQEIIDGASSMSLQERQR 148

Arabidopsis thaliana (taxid: 3702)

>sp|P0C8S1|RP8L2_ARATH Probable disease resistance RPP8-like protein 2 OS=Arabidopsis thaliana GN=RPP8L2 PE=1 SV=1

 Score = 51.2 bits (121), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 65/131 (49%), Gaps = 11/131 (8%)

Query: 2   IQAVLSDAEEKRLTDEAVKMWLDELQDLAYDAEDILDGFGTQALESKLMAKNQDSTGQVL 61
           +Q++L DA+ K+   E V+ +L++++D+ YDA+DI++ F    L ++L  K +    QV 
Sbjct: 41  LQSLLKDADAKKNETERVRNFLEDVKDIVYDADDIIESF----LLNELRGKEKGIKKQVR 96

Query: 62  SFIPASLNPNAIMSNYSMGSKIKDITSRLEQLCQDRIELGLQRIA-GGASSPTAAAHQRP 120
           +          ++      S I+ IT R+ ++      LG+Q IA GG  S +    QR 
Sbjct: 97  TL------ACFLVDRRKFASDIEGITKRISEVIVGMQSLGIQHIADGGGRSLSLQERQRE 150

Query: 121 PSSSVPTEREN 131
              +     E+
Sbjct: 151 IRQTFSRNSES 161

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	498
224057382	695	predicted protein [Populus trichocarpa]	0.598	0.428	0.394	5e-51
297742679	1760	unnamed protein product [Vitis vinifera]	0.710	0.201	0.345	6e-50
147860511	1406	hypothetical protein VITISV_014536 [Viti	0.700	0.248	0.355	7e-49
359495024	1390	PREDICTED: putative disease resistance p	0.700	0.251	0.355	9e-49
284026888	1424	CC-NBS-LRR protein [Quercus suber]	0.610	0.213	0.356	4e-48
296090374	908	unnamed protein product [Vitis vinifera]	0.644	0.353	0.387	1e-47
359495026	2204	PREDICTED: uncharacterized protein LOC10	0.704	0.159	0.354	3e-47
147767435	1486	hypothetical protein VITISV_003329 [Viti	0.586	0.196	0.371	5e-47
296087855	992	unnamed protein product [Vitis vinifera]	0.606	0.304	0.378	9e-47
296090606	1093	unnamed protein product [Vitis vinifera]	0.614	0.279	0.363	1e-46

>gi|224057382|ref|XP_002299219.1| predicted protein [Populus trichocarpa] gi|222846477|gb|EEE84024.1| predicted protein [Populus trichocarpa]

 Score =  208 bits (530), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 137/347 (39%), Positives = 192/347 (55%), Gaps = 49/347 (14%)

Query: 133 REAALCEKLNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPLW 192
           R+A L EK +L AL L+W S   +SR+  +E  VLD+LQPH+ +K++ I +Y    FP W
Sbjct: 139 RQANLPEKQDLEALVLKWSSDITDSRNERIENDVLDMLQPHQGLKELTINSYSSTEFPSW 198

Query: 193 IGDPLFSKIEFLELENCNNCVSLPSLGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFP 252
           +GDP FS +  L LENC NC S+P+LGLL SLK L++ G+  L+SI  E+YGE  S PFP
Sbjct: 199 VGDPSFSNMVLLSLENCENCTSVPALGLLKSLKDLSITGMSGLQSIGREIYGECCSNPFP 258

Query: 253 SLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPSLEILV-- 310
           SL+ L F+++P W +W  +  G   V++FPRL +LS++ C ++ G+L   LPSL+ LV  
Sbjct: 259 SLETLYFKDMPGWNYWHAN--GEEQVEVFPRLHKLSLLNCSRVLGRLLYYLPSLKELVIC 316

Query: 311 -SKCEKLVVSLSSYPRLCRLEVDECKELVCRTPID-SKL--IKFMTISNSSLDMIGCKGM 366
            SKC  L VS+SS+P L  L+VD CKEL+CR+    S L  +    ISN S   +G    
Sbjct: 317 ESKC--LSVSISSFPMLRNLDVDGCKELICRSTTQFSSLNSVVLSCISNFSFLTLG---- 370

Query: 367 LYDSQAGSSLPKPMTTTNVLEFGKLLEPGFQILETLVIGNSEQLKPWRQGRGLSMGFQRL 426
                             + EF  L           + G  E    W+ G  L    Q L
Sbjct: 371 --------------FMQGLAEFKNL----------KITGCQEITDFWQNGVRL---LQHL 403

Query: 427 TSLQSLKIWNCPNLTLFP--------EVGLPSSLLDLYVNNCPRLKK 465
           +SL+ LKI +C  L  F         ++GLP SL  L + +C  L++
Sbjct: 404 SSLRYLKIRSCSRLVSFGAEEEGQELKLGLPCSLEMLKLIDCESLQQ 450

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297742679|emb|CBI35132.3| unnamed protein product [Vitis vinifera]

 Score =  205 bits (521), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 142/411 (34%), Positives = 215/411 (52%), Gaps = 57/411 (13%)

Query: 130  ENAREAALCEKLNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARF 189
            ++A++A L +K N+  LT+EW + F N+R+   E HVL+ LQPH+ +KK+ +  YGG++ 
Sbjct: 1359 QDAKDANLADKQNIKELTMEWSNDFRNARNETEEMHVLESLQPHRNLKKLMVAFYGGSQL 1418

Query: 190  PLWIGDPLFSKIEFLELENCNNCVSLPSLGLLSSLKHLAVKGLKKLKSIESEVYGEGFSM 249
            P WI +P    +  L L+NC  C SLPSLG L  LK L ++GL K+  I  E YGE    
Sbjct: 1419 PCWIKEPSCPMMTHLILKNCKMCTSLPSLGRLPLLKDLHIEGLSKIMIISLEFYGESVK- 1477

Query: 250  PFPSLKILRFENLPEWWHW---DTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPSL 306
            PFPSL+ L+FEN+P+W  W   D D +     ++FP L+EL++ KCPKL   LP L PSL
Sbjct: 1478 PFPSLEFLKFENMPKWKTWSFPDVDEEP----ELFPCLRELTIRKCPKLDKGLPNL-PSL 1532

Query: 307  EIL-VSKCEKLVVSLSSYPRLCRLEVDECKELVCRTPIDSKL-------IKFMTISN--- 355
              L + +C  L V  S +  L +L  +EC +++ R+ +D  L       +K +   N   
Sbjct: 1533 VTLDIFECPNLAVPFSRFASLRKLNAEECDKMILRSGVDDSLPTPNLRQLKIVNCKNLKS 1592

Query: 356  -----------SSLDMIGCKGMLYDSQAG-------------SSLPKPMTTTNVLEFGKL 391
                        +L M  C G++     G              +L  PM+   +     L
Sbjct: 1593 LPPQIQNLTSLRALSMWDCPGVVSFPVGGLAPNLTVLEICDCENLKMPMSEWGLHSLTYL 1652

Query: 392  LEPGFQ-ILETLV-IGNSEQLKPWRQGRGL-----SMGF---QRLTSLQSLKIWNCPNLT 441
            L    + +L  +V + +SE L P            S+ F   Q L  L+ L    CP L 
Sbjct: 1653 LRLLIRDVLPDMVSLSDSECLFPPSLSSLSISHMESLAFLNLQSLICLKELSFRGCPKLQ 1712

Query: 442  LFPEVGLPSSLLDLYVNNCPRLKKVCKRDQGKEWPKIAHIPWVVIDGKFIY 492
                +GLP++++ L + +CP LK+ C +++G+ WP IAHIP + IDG +I+
Sbjct: 1713 Y---LGLPATVVSLQIKDCPMLKERCLKEKGEYWPNIAHIPCIQIDGSYIH 1760

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147860511|emb|CAN79726.1| hypothetical protein VITISV_014536 [Vitis vinifera]

 Score =  201 bits (511), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 136/383 (35%), Positives = 200/383 (52%), Gaps = 34/383 (8%)

Query: 131  NAREAALCEKLNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFP 190
            +A +A L  K ++  LT+ W   FD+SR+   E  VL++LQP + +KK+ +  YGG +FP
Sbjct: 729  DAMDACLKNKCHIEELTMGWSGDFDDSRNELNEMLVLELLQPQRNLKKLTVEFYGGPKFP 788

Query: 191  LWIGDPLFSKIEFLELENCNNCVSLPSLGLLSSLKHLAVKGLKKLKSIESEVYGE-GFSM 249
             WIG+P FSK+E L L+NC  C SLP LG LS LK L ++G+ K+K+I  E +GE     
Sbjct: 789  SWIGNPSFSKMESLTLKNCGKCTSLPCLGRLSLLKALRIQGMCKVKTIGDEFFGEVSLFQ 848

Query: 250  PFPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPSL-EI 308
            PFP L+ LRFE++PEW  W           +F  L+EL + +CPKL+G LP  LPSL E+
Sbjct: 849  PFPCLESLRFEDMPEWEDWCFSDMVEECEGLFSCLRELRIRECPKLTGSLPNCLPSLAEL 908

Query: 309  LVSKCEKLVVSLSSYPRLCRLEVDECKELVCRTPIDSKLIKFMTISNSS----------- 357
             + +C KL  +L     +C L V EC E+V R  +D   +  + I   S           
Sbjct: 909  EIFECPKLKAALPRLAYVCSLNVVECNEVVLRNGVDLSSLTTLNIQRISRLTCLREGFTQ 968

Query: 358  -------LDMIGCKGM--LYDSQAGSSLPKPMTTTNVLEFGKLLEPGFQI----LETLVI 404
                   L + GC  M  L++++ G    + + + ++ +   L+    Q     L+ L I
Sbjct: 969  LLAALQKLVIRGCGEMTSLWENRFGLECLRGLESIDIWQCHGLVSLEEQRLPCNLKHLKI 1028

Query: 405  GNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPNLTLFPEVGLPSSLLDLYVNNCPRLK 464
             N   L+       L  G QRLT L+ L + +CP L  FPE+GLP  L  L +  C  LK
Sbjct: 1029 ENCANLQ------RLPNGLQRLTCLEELSLQSCPKLESFPEMGLPPMLRSLVLQKCNTLK 1082

Query: 465  KVCKRDQGK--EWPKIAHIPWVV 485
             +         E+ +I H P ++
Sbjct: 1083 LLPHNYNSGFLEYLEIEHCPCLI 1105

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359495024|ref|XP_002267933.2| PREDICTED: putative disease resistance protein At3g14460-like [Vitis vinifera]

 Score =  201 bits (510), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 136/383 (35%), Positives = 200/383 (52%), Gaps = 34/383 (8%)

Query: 131  NAREAALCEKLNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFP 190
            +A +A L  K ++  LT+ W   FD+SR+   E  VL++LQP + +KK+ +  YGG +FP
Sbjct: 729  DAMDACLKNKCHIEELTMGWSGDFDDSRNELNEMLVLELLQPQRNLKKLTVEFYGGPKFP 788

Query: 191  LWIGDPLFSKIEFLELENCNNCVSLPSLGLLSSLKHLAVKGLKKLKSIESEVYGE-GFSM 249
             WIG+P FSK+E L L+NC  C SLP LG LS LK L ++G+ K+K+I  E +GE     
Sbjct: 789  SWIGNPSFSKMESLTLKNCGKCTSLPCLGRLSLLKALRIQGMCKVKTIGDEFFGEVSLFQ 848

Query: 250  PFPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPSL-EI 308
            PFP L+ LRFE++PEW  W           +F  L+EL + +CPKL+G LP  LPSL E+
Sbjct: 849  PFPCLESLRFEDMPEWEDWCFSDMVEECEGLFSCLRELRIRECPKLTGSLPNCLPSLAEL 908

Query: 309  LVSKCEKLVVSLSSYPRLCRLEVDECKELVCRTPIDSKLIKFMTISNSS----------- 357
             + +C KL  +L     +C L V EC E+V R  +D   +  + I   S           
Sbjct: 909  EIFECPKLKAALPRLAYVCSLNVVECNEVVLRNGVDLSSLTTLNIQRISRLTCLREGFTQ 968

Query: 358  -------LDMIGCKGM--LYDSQAGSSLPKPMTTTNVLEFGKLLEPGFQI----LETLVI 404
                   L + GC  M  L++++ G    + + + ++ +   L+    Q     L+ L I
Sbjct: 969  LLAALQKLVIRGCGEMTSLWENRFGLECLRGLESIDIWQCHGLVSLEEQRLPCNLKHLKI 1028

Query: 405  GNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPNLTLFPEVGLPSSLLDLYVNNCPRLK 464
             N   L+       L  G QRLT L+ L + +CP L  FPE+GLP  L  L +  C  LK
Sbjct: 1029 ENCANLQ------RLPNGLQRLTCLEELSLQSCPKLESFPEMGLPPMLRSLVLQKCNTLK 1082

Query: 465  KVCKRDQGK--EWPKIAHIPWVV 485
             +         E+ +I H P ++
Sbjct: 1083 LLPHNYNSGFLEYLEIEHCPCLI 1105

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|284026888|gb|ADB66335.1| CC-NBS-LRR protein [Quercus suber]

 Score =  198 bits (504), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 123/345 (35%), Positives = 185/345 (53%), Gaps = 41/345 (11%)

Query: 127  TERENAREAALCEKLNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGG 186
            T+ + AR++ L  K +L+ + +EW S  + S+D   +  VL++LQP+  +K++ ++ YGG
Sbjct: 715  TKAQEARDSYLYGKQDLNEVVMEWSSNLNESQDEETQLEVLNMLQPNVKLKELTVKCYGG 774

Query: 187  ARFPLWIGDPLFSKIEFLELENCNNCVSLPSLGLLSSLKHLAVKGLKKLKSIESEVYGEG 246
             +FP WIGDP FS +  L  ENC+NC SLP +G L  LK L +KG+  +KS+  E YGE 
Sbjct: 775  TKFPTWIGDPSFSNLVLLRFENCDNCNSLPPVGQLPFLKDLLIKGMAGVKSVGREFYGES 834

Query: 247  FSMPFPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPSL 306
             S PF SL+ L FE++P W +W   I   V+ + F  L +LS+++C  L  KLP+ LPSL
Sbjct: 835  CSRPFQSLETLHFEDMPRWVNW---IPLGVN-EAFACLHKLSIIRCHNLVRKLPDHLPSL 890

Query: 307  -EILVSKCEKLVVSLSSYPRLCRLEVDECKELVCRTPIDSKLIKFMTISNSSLDMIGCKG 365
             ++++  C  +VVS+S+ P LC L ++ CK + C                          
Sbjct: 891  KKLVIHGCWNMVVSVSNLPMLCVLVIEGCKRVEC-------------------------- 924

Query: 366  MLYDSQAGSSLPKPMTTTNVLEFGKL---LEPGFQILETLVIGNSEQLKP-WRQGRGLSM 421
               +S  G   P  M  + + EFG     L  G   +E L I +SE+L   W +   +  
Sbjct: 925  ---ESSVGFGSPYSMAFSKISEFGNATAGLMHGVSKVEYLKIVDSEKLTTLWEK---IPE 978

Query: 422  GFQRLTSLQSLKIWNCPNLTLFPEVGLPSSLLDLYVNNCPRLKKV 466
            G  RL  L+ L I +CP L  FP  G PS L  + + +C  LK +
Sbjct: 979  GLHRLKFLRELSIEDCPTLVSFPASGFPSMLKVIQIKSCSGLKSL 1023

Source: Quercus suber

Species: Quercus suber

Genus: Quercus

Family: Fagaceae

Order: Fagales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296090374|emb|CBI40193.3| unnamed protein product [Vitis vinifera]

 Score =  197 bits (500), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 139/359 (38%), Positives = 193/359 (53%), Gaps = 38/359 (10%)

Query: 130 ENAREAALCEKLNLHALTLEWGSQ-FDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGAR 188
           ++AR+A L +K +L  L +EW S  FD+S++  +E +VL  LQP+  +KK+ I++YGG  
Sbjct: 403 QDARDANLKDKHHLEELLMEWSSNMFDDSQNETIELNVLHFLQPNTNLKKLTIQSYGGLT 462

Query: 189 FPLWIGDPLFSKIEFLELENCNNCVSLPSLGLLSSLKHLAVKGLKKLKSIESEVYGEG-- 246
           FP WIGDP FSK+  LEL  C  C  LPSLG LSSLK L VKG++ +KS+  E YGE   
Sbjct: 463 FPYWIGDPSFSKMVCLELNYCRKCTLLPSLGRLSSLKKLCVKGMQGVKSVGIEFYGEPSL 522

Query: 247 FSMPFPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPSL 306
              PFPSL+ LRFE++PEW  W +        + +PRL+EL +  CPKL  KLP  LPSL
Sbjct: 523 CVKPFPSLEFLRFEDMPEWEEWCSS-------ESYPRLRELEIHHCPKLIQKLPSHLPSL 575

Query: 307 EIL-VSKCEKLVVSLSSYPRLCR---LEVDECKELVCRTPID------------SKLIKF 350
             L +  C KLV  L + P  C    LE+++C  L  + PI              K  K 
Sbjct: 576 VKLDIIDCPKLVAPLPNQPLPCNLEYLEINKCASLE-KLPIGLQSLTSLRELSIQKCPKL 634

Query: 351 MTISNSSLDMIGCKGMLYDSQAGSS-LPKPMTTTNVLEFGKL--LEPGFQI--LETLVIG 405
            +++      +     LYD +     LP  M    +    +L  +  GF    L+ L I 
Sbjct: 635 CSLAEMDFPPMLISLELYDCEGLEGLLPSTMKRLEIRNCKQLESISLGFSSPNLKMLHID 694

Query: 406 NSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPNLTLFPEVGLPSSLLDLYVNNCPRLK 464
           + + LK       L +  Q  TSL+ L+I++CPNL  F E GL  +L   ++ NC  LK
Sbjct: 695 DCKNLK------SLPLQMQSFTSLRDLRIYDCPNLVSFAEEGLSLNLTSFWIRNCKNLK 747

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359495026|ref|XP_003634900.1| PREDICTED: uncharacterized protein LOC100854556 [Vitis vinifera]

 Score =  196 bits (497), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 135/381 (35%), Positives = 197/381 (51%), Gaps = 30/381 (7%)

Query: 131  NAREAALCEKLNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFP 190
            +A +A L  K ++  LT+ W   FD+SR+   E  VL++LQP + +KK+ +  YGG +FP
Sbjct: 728  DAVDACLKNKCHIEELTMGWSGDFDDSRNELNEMLVLELLQPQRNLKKLTVEFYGGPKFP 787

Query: 191  LWIGDPLFSKIEFLELENCNNCVSLPSLGLLSSLKHLAVKGLKKLKSIESEVYGE-GFSM 249
             WIG+P FSK+E L L+NC  C SLP LG LS LK L ++G+ K+K+I  E +GE     
Sbjct: 788  SWIGNPSFSKMESLTLKNCGKCTSLPCLGRLSLLKALRIQGMCKVKTIGDEFFGEVSLFK 847

Query: 250  PFPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPSL-EI 308
            PFP L+ LRFE++PEW  W           +F  L+EL + +CPKL+G LP  LPSL E+
Sbjct: 848  PFPCLESLRFEDMPEWEDWCFSDMVEECEGLFSCLRELRIRECPKLTGSLPNCLPSLAEL 907

Query: 309  LVSKCEKLVVSLSSYPRLCRLEVDECKELVCRTPIDSKLIKFMTISNSSLDMIGCKGMLY 368
             + +C KL  +L     +C L V EC E+V R  +D  L    T++   +  + C    +
Sbjct: 908  EIFECPKLKAALPRLAYVCSLNVVECNEVVLRNGVD--LSSLTTLNIQRISRLTCLREGF 965

Query: 369  DSQAGSSLPKPMTTTNVLEFGKLLEPGFQI-----LETLVIGNSEQLKPWRQGR------ 417
             +Q  ++L K +      E   L E  F +     LE++ I     L+   + R      
Sbjct: 966  -TQLLAALQK-LVIRGCGEMTSLWENRFGLECLRGLESIDIWQCHGLESLEEQRLPCNLK 1023

Query: 418  -----------GLSMGFQRLTSLQSLKIWNCPNLTLFPEVGLPSSLLDLYVNNCPRLKKV 466
                        L  G Q LT L+ L + +CP L  FPE+GLP  L  L +  C  LK +
Sbjct: 1024 HLKIENCANLQRLPNGLQSLTCLEELSLQSCPKLESFPEMGLPPMLRSLVLQKCNTLKLL 1083

Query: 467  CKRDQGK--EWPKIAHIPWVV 485
                     E+ +I H P ++
Sbjct: 1084 PHNYNSGFLEYLEIEHCPCLI 1104

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147767435|emb|CAN66722.1| hypothetical protein VITISV_003329 [Vitis vinifera]

 Score =  195 bits (495), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 126/339 (37%), Positives = 172/339 (50%), Gaps = 47/339 (13%)

Query: 130  ENAREAALCEKLNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARF 189
             +A +A L  K ++  LT+ W   FD+SR+   E  VL++LQP + +KK+ +  YGG +F
Sbjct: 855  RDAVDACLKNKCHIEELTMGWSGDFDDSRNELNEMLVLELLQPQRNLKKLTVEFYGGPKF 914

Query: 190  PLWIGDPLFSKIEFLELENCNNCVSLPSLGLLSSLKHLAVKGLKKLKSIESEVYGE-GFS 248
            P WIG+P FSK+E L L+NC  C SLP LG LS LK L ++G+ K+K+I  E +GE    
Sbjct: 915  PSWIGNPSFSKMESLTLKNCGKCTSLPCLGRLSLLKALRIQGMCKVKTIGDEFFGEVSLF 974

Query: 249  MPFPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPSL-E 307
             PFP L+ LRFE++PEW  W           +F  L+EL + +CPKL+G LP  LPSL E
Sbjct: 975  QPFPCLESLRFEDMPEWEDWCFSDMVEECEGLFSCLRELRIRECPKLTGTLPSCLPSLAE 1034

Query: 308  ILVSKCEKLVVSLSSYPRLCRLEVDECKELVCRTPIDSKLIKFMTISNSSLDMIGCKGML 367
            + + +C KL  +L     +C L V EC E+V R  +D                       
Sbjct: 1035 LEIFECPKLKAALPRLAYVCSLNVVECNEVVLRNGVDL---------------------- 1072

Query: 368  YDSQAGSSLPKPMTTTNVLEFGKL--LEPGFQILETLVIGNSEQLKPWRQGRGLSMGFQR 425
                        +TT N+    +L  L  GF            QL    Q   L  G Q 
Sbjct: 1073 ----------SSLTTLNIQRISRLTCLREGFT-----------QLLAALQKLRLPNGLQS 1111

Query: 426  LTSLQSLKIWNCPNLTLFPEVGLPSSLLDLYVNNCPRLK 464
            LT L+ L + +CP L  FPE+GLP  L  L +  C  LK
Sbjct: 1112 LTCLEELSLQSCPKLESFPEMGLPLMLRSLVLQKCKTLK 1150

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296087855|emb|CBI35111.3| unnamed protein product [Vitis vinifera]

 Score =  194 bits (493), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 132/349 (37%), Positives = 191/349 (54%), Gaps = 47/349 (13%)

Query: 131 NAREAALCEKLNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFP 190
           +A  A L EK  +  LT+EWG  F NSR    E  VL+ L+P + +K++ +  YGG+ F 
Sbjct: 567 DAMHANLEEKHYIEELTMEWGGDFGNSRKRMNEMIVLEGLRPPRNLKRLTVAFYGGSTFS 626

Query: 191 LWIGDPLFSKIEFLELENCNNCVSLPSLGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMP 250
            WI DP F  +  L L+NC  C SLPSLG LS LK L ++G+  +++I+ E YG G + P
Sbjct: 627 GWIRDPSFPSMTQLILKNCRRCTSLPSLGKLSLLKTLHIEGMSDIRTIDVEFYG-GIAQP 685

Query: 251 FPSLKILRFENLPEW--WHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPSLEI 308
           FPSL+ L+FEN+P+W  W +   ++G   V++FPRL++L++ KC KL  +LP+ LPSL  
Sbjct: 686 FPSLEFLKFENMPKWEDWFFPNAVEG---VELFPRLRDLTIRKCSKLVRQLPDCLPSLVK 742

Query: 309 L-VSKCEKLVVSLSSYPRLCRLEVDECKELVCRTPI----DSKLIKFMTISNS------- 356
           L +SKC  L VS S +  L  L ++ECK++V R+ +      +L    ++ N        
Sbjct: 743 LDISKCRNLAVSFSRFASLGELNIEECKDMVLRSGVVADNGDQLTSRWSLQNGLQNLTCL 802

Query: 357 -SLDMIGCKGMLYDSQAGSSLPKPMTTTNVLEFGKLLEPGFQILETLVIGNSEQLKPWRQ 415
             L+M+GC  +  +S   + LP PM                  L  LV      L+  R 
Sbjct: 803 EELEMMGC--LAVESFPETGLP-PM------------------LRRLV------LQKCRS 835

Query: 416 GRGLSMGFQRLTSLQSLKIWNCPNLTLFPEVGLPSSLLDLYVNNCPRLK 464
            R L   +     L+SL+I  CP+L  FP   LPS+L  L V +C RLK
Sbjct: 836 LRSLPHNYSS-CPLESLEIRCCPSLICFPHGRLPSTLKQLMVADCIRLK 883

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296090606|emb|CBI40990.3| unnamed protein product [Vitis vinifera]

 Score =  193 bits (491), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 130/358 (36%), Positives = 184/358 (51%), Gaps = 52/358 (14%)

Query: 132 AREAALCEKLNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPL 191
           AR   L E  N+  L + W  +F NSR+   +  VL  LQPH+ +KK+ IR YGG++F  
Sbjct: 347 ARYVNLKEGRNIEDLIMVWSEKFGNSRNERTKIEVLKWLQPHQSLKKLDIRFYGGSKFLN 406

Query: 192 WIGDPLFSKIEFLELENCNNCVSLPSLGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPF 251
           WIGDP FSK+ +L+L NC NC SLP+LG L  LK+L ++G+ ++K I  E YGE  + PF
Sbjct: 407 WIGDPSFSKMVYLDLINCKNCTSLPALGGLPFLKNLVIEGMNEVKLIGDEFYGET-ANPF 465

Query: 252 PSLKILRFENLPEWWHWDTDIKGNVHVD-IFPRLQELSVVKCPKLSGKLPELLPSLEILV 310
            +L+ LRFE +P+W  W     G+     +FP L+EL ++K                   
Sbjct: 466 RALEHLRFEKMPQWKDWLIPKLGHEETQALFPCLRELIIIK------------------- 506

Query: 311 SKCEKLVVSLSSYPRLCRLEVDECKELVCRTPIDSKLIKFMTISNSSLDMIGCKGMLYDS 370
             C KL+      P L  L V EC+EL    P    LIK + +    L M GC  +    
Sbjct: 507 --CPKLINLSHELPSLVTLHVQECQELDISIPRLPLLIKLIVV--GLLKMNGCYNL---- 558

Query: 371 QAGSSLPKPMTTTNVLEFGKLLEPGFQILETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQ 430
                LP  + T                L  L+I N  +L  + +     +G   +  L+
Sbjct: 559 ---EKLPNALHTLTS-------------LTDLLIHNCPKLLSFPE-----IGLPPM--LR 595

Query: 431 SLKIWNCPNLTLFPEVGLPSSLLDLYVNNCPRLKKVCKRDQGKEWPKIAHIPWVVIDG 488
            L++ NC   +  P  GLP++L  L +  CP LKK C +D+GK+WPKIAHIP++ IDG
Sbjct: 596 RLRVRNCRLRSFVPNEGLPATLARLVIRECPVLKKRCLKDKGKDWPKIAHIPYMQIDG 653

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	498
TAIR|locus:2091672	1054	AT3G14470 [Arabidopsis thalian	0.423	0.200	0.336	4.2e-36
TAIR|locus:2091662	1424	AT3G14460 [Arabidopsis thalian	0.371	0.129	0.338	1.2e-24
TAIR|locus:2011982	857	AT1G50180 [Arabidopsis thalian	0.222	0.129	0.341	2.1e-08
TAIR|locus:504956186	1138	AT1G58602 [Arabidopsis thalian	0.387	0.169	0.300	2.3e-08
TAIR|locus:504956182	1049	AT1G58848 [Arabidopsis thalian	0.417	0.198	0.298	2.5e-08
TAIR|locus:2826978	1049	AT1G59218 [Arabidopsis thalian	0.417	0.198	0.298	2.5e-08
TAIR|locus:2037623	899	AT1G58410 [Arabidopsis thalian	0.242	0.134	0.285	0.00011
TAIR|locus:2176486	908	RPP8 "RECOGNITION OF PERONOSPO	0.216	0.118	0.262	0.00019
TAIR|locus:504956184	1017	AT1G58807 "AT1G58807" [Arabido	0.204	0.100	0.263	0.00024
TAIR|locus:2827038	1017	AT1G59124 "AT1G59124" [Arabido	0.204	0.100	0.263	0.00024

TAIR|locus:2091672 AT3G14470 [Arabidopsis thaliana (taxid:3702)]

 Score = 277 (102.6 bits), Expect = 4.2e-36, Sum P(3) = 4.2e-36
 Identities = 78/232 (33%), Positives = 112/232 (48%)

Query:   131 NAREAALCEKLNLHALTLEW--GSQFD----NSRDVAVEEHVLDILQPHKCIKKVAIRNY 184
             +A EA L  K +L  +   W  GS       N      E  V + L+PH+ I+K+AI  Y
Sbjct:   716 DAAEANLNSKKHLREIDFVWRTGSSSSENNTNPHRTQNEAEVFEKLRPHRHIEKLAIERY 775

Query:   185 GGARFPLWIGDPLFSKIEFLELENCNNCVXXXXXXXXXXXXXXAVKGLKKLKSIESEVYG 244
              G RFP W+ DP FS+I  + L  C  C                + G+  L+SI  + Y 
Sbjct:   776 KGRRFPDWLSDPSFSRIVCIRLRECQYCTSLPSLGQLPCLKELHISGMVGLQSIGRKFYF 835

Query:   245 EGFSM------PFPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGK 298
                 +      PF SL+ LRF+NLP+W  W  D++     D+FP L++L +++CP+L+G 
Sbjct:   836 SDQQLRDQDQQPFRSLETLRFDNLPDWQEW-LDVRVT-RGDLFPSLKKLFILRCPELTGT 893

Query:   299 LPELLPSLEIL-VSKCEKLVVSLS----SYPRLCRLEV-DECKELVCRTPID 344
             LP  LPSL  L + KC  L         SY  L  L +   C  LV + P++
Sbjct:   894 LPTFLPSLISLHIYKCGLLDFQPDHHEYSYRNLQTLSIKSSCDTLV-KFPLN 944

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

TAIR|locus:2091662 AT3G14460 [Arabidopsis thaliana (taxid:3702)]

 Score = 248 (92.4 bits), Expect = 1.2e-24, Sum P(3) = 1.2e-24
 Identities = 67/198 (33%), Positives = 99/198 (50%)

Query:   132 AREAALCEKLNLHALTLEW---GSQF--DNSRDVAVEE-HVLDILQPHKCIKKVAIRNYG 185
             A++A L  K  L  L L+W   GS F   +   +A ++  VL +L+PH  +K   I +Y 
Sbjct:   711 AKDAGLKRKPFLDGLILKWTVKGSGFVPGSFNALACDQKEVLRMLEPHPHLKTFCIESYQ 770

Query:   186 GARFPLWIGDPLFSKIEFLELENCNNCVXXXXXXXXXXXXXXAVKGLKKLKSIESEVY-G 244
             G  FP W+GD  F  I  + L +CN C+              +++    L+ +  + + G
Sbjct:   771 GGAFPKWLGDSSFFGITSVTLSSCNLCISLPPVGQLPSLKYLSIEKFNILQKVGLDFFFG 830

Query:   245 EGFS--MPFPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPEL 302
             E  S  +PF SL+IL+F  +P W  W   I   +   IFP LQ+L + +CP L  K PE 
Sbjct:   831 ENNSRGVPFQSLQILKFYGMPRWDEW---ICPELEDGIFPCLQKLIIQRCPSLRKKFPEG 887

Query:   303 LPS-LEILVSKCEKLVVS 319
             LPS  E+ +S C    VS
Sbjct:   888 LPSSTEVTISDCPLRAVS 905

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2011982 AT1G50180 [Arabidopsis thaliana (taxid:3702)]

 Score = 150 (57.9 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
 Identities = 41/120 (34%), Positives = 68/120 (56%)

Query:     2 IQAVLSDAEEKRLTDEAVKMWLDELQDLAYDAEDILDGFGTQALESKLMAKNQDSTGQVL 61
             +   L DA+EK+   E V+ W+  +++ +YDAEDIL+ F  +A ES+     Q    +VL
Sbjct:    41 LNCFLKDADEKQHESERVRNWVAGIREASYDAEDILEAFFLKA-ESR----KQKGMKRVL 95

Query:    62 SFIPASLNPNAIMSNYSMGSKIKDITSRLEQLCQDRIELGLQRIAG--GASSPTAAAHQR 119
               +   LN  A+ S +S+GS+I++ITSRL ++    ++ G++   G  G S   +   QR
Sbjct:    96 RRLACILN-EAV-SLHSVGSEIREITSRLSKIAASMLDFGIKESMGREGLSLSDSLREQR 153

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:504956186 AT1G58602 [Arabidopsis thaliana (taxid:3702)]

 Score = 124 (48.7 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
 Identities = 68/226 (30%), Positives = 95/226 (42%)

Query:   248 SMPFPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLP-ELLPS- 305
             S  FP L+ L    L EW  W       V     P L  L++  C KL  +LP E LPS 
Sbjct:   820 SCGFPQLQKLSISGLKEWEDW------KVEESSMPLLLTLNIFDCRKLK-QLPDEHLPSH 872

Query:   306 -LEILVSKC--EKLVVSLSSYPRLCRLEVDE-C-KELVCRTPIDSKLIKFMTISNSSLDM 360
                I + KC  E  + +L     L  L + E C + +VC      +L K   +  S LD 
Sbjct:   873 LTAISLKKCGLEDPIPTLERLVHLKELSLSELCGRIMVCTGGGFPQLHK---LDLSELD- 928

Query:   361 IGCKGMLYDSQAGSSLPKPMTTTNVLEFGKL--LEPGFQILETLVIGNSEQLKPWRQGRG 418
              G +  + +     S+P+ + T  +    KL  L  GF  L+ L +   E+   W +G  
Sbjct:   929 -GLEEWIVED---GSMPR-LHTLEIRRCLKLKKLPNGFPQLQNLHLTEVEE---WEEGMI 980

Query:   419 LSMGFQRLTSLQSLKIWNCPNLT---LFPEVGLPSSLLDLYVNNCP 461
             +  G   L  L +L IW+CP L     FP       LL +YV   P
Sbjct:   981 VKQGSMPL--LHTLYIWHCPKLPGEQHFPSHLTTVFLLGMYVEEDP 1024

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:504956182 AT1G58848 [Arabidopsis thaliana (taxid:3702)]

 Score = 119 (46.9 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
 Identities = 74/248 (29%), Positives = 107/248 (43%)

Query:   251 FPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLP-ELLPS--LE 307
             FP L+ L  + L EW  W       V     P L  L +  C KL  +LP E LPS    
Sbjct:   825 FPQLQKLSIKGLEEWEDW------KVEESSMPVLHTLDIRDCRKLK-QLPDEHLPSHLTS 877

Query:   308 ILVSKC---EKLVVSLSSYPRLCRLEV----DECKELVCRTPIDSKLIKFMTISNSSLDM 360
             I +  C   E  + +L     L  L++       + +VC      +L K   +  S LD 
Sbjct:   878 ISLFFCCLEEDPMPTLERLVHLKELQLLFRSFSGRIMVCAGSGFPQLHK---LKLSELD- 933

Query:   361 IGCKGMLYDSQAGSSLPKPMTTTNVLEFGKL--LEPGFQILETLVIGNSEQLKPWRQGRG 418
              G +  + +     S+P+ + T  +    KL  L  GF  L+ L +   E+ + W    G
Sbjct:   934 -GLEEWIVED---GSMPQ-LHTLEIRRCPKLKKLPNGFPQLQNLELNELEEWEEWIVEDG 988

Query:   419 LSMGFQRLTSLQSLKIWNCPNLTLFPEVGLPS--SLLDLYVNNCPRLKKVCKRDQGKEWP 476
              SM       L +L+IWNCP L   P+ GL    SL +L V    R KK   +  G+++ 
Sbjct:   989 -SMPL-----LHTLRIWNCPKLKQLPD-GLRFIYSLKNLTVPK--RWKKRLSKG-GEDYY 1038

Query:   477 KIAHIPWV 484
             K+ HIP V
Sbjct:  1039 KVQHIPSV 1046

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2826978 AT1G59218 [Arabidopsis thaliana (taxid:3702)]

 Score = 119 (46.9 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
 Identities = 74/248 (29%), Positives = 107/248 (43%)

Query:   251 FPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLP-ELLPS--LE 307
             FP L+ L  + L EW  W       V     P L  L +  C KL  +LP E LPS    
Sbjct:   825 FPQLQKLSIKGLEEWEDW------KVEESSMPVLHTLDIRDCRKLK-QLPDEHLPSHLTS 877

Query:   308 ILVSKC---EKLVVSLSSYPRLCRLEV----DECKELVCRTPIDSKLIKFMTISNSSLDM 360
             I +  C   E  + +L     L  L++       + +VC      +L K   +  S LD 
Sbjct:   878 ISLFFCCLEEDPMPTLERLVHLKELQLLFRSFSGRIMVCAGSGFPQLHK---LKLSELD- 933

Query:   361 IGCKGMLYDSQAGSSLPKPMTTTNVLEFGKL--LEPGFQILETLVIGNSEQLKPWRQGRG 418
              G +  + +     S+P+ + T  +    KL  L  GF  L+ L +   E+ + W    G
Sbjct:   934 -GLEEWIVED---GSMPQ-LHTLEIRRCPKLKKLPNGFPQLQNLELNELEEWEEWIVEDG 988

Query:   419 LSMGFQRLTSLQSLKIWNCPNLTLFPEVGLPS--SLLDLYVNNCPRLKKVCKRDQGKEWP 476
              SM       L +L+IWNCP L   P+ GL    SL +L V    R KK   +  G+++ 
Sbjct:   989 -SMPL-----LHTLRIWNCPKLKQLPD-GLRFIYSLKNLTVPK--RWKKRLSKG-GEDYY 1038

Query:   477 KIAHIPWV 484
             K+ HIP V
Sbjct:  1039 KVQHIPSV 1046

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2037623 AT1G58410 [Arabidopsis thaliana (taxid:3702)]

 Score = 118 (46.6 bits), Expect = 0.00011, Sum P(2) = 0.00011
 Identities = 38/133 (28%), Positives = 66/133 (49%)

Query:     1 MIQAVLSDAEEKRLTDEAVKMWLDELQDLAYDAEDILDGFGTQALESKLMAKNQDSTGQV 60
             ++++ L DA+ K+   E V+  ++E++D+ YD EDI++ F    L+ K+  K +    ++
Sbjct:    38 LLKSFLKDADAKKHISEMVRHCVEEIKDIVYDTEDIIETF---ILKEKVEMK-RGIMKRI 93

Query:    61 LSFIPASLNPNAIMSNYSMGSKIKDITSRLEQLCQDRIELGLQRIA--GGASSPTAAAHQ 118
               F  AS     IM    + S I  I+ R+ ++ QD    G+Q+I   G  SS      Q
Sbjct:    94 KRF--AS----TIMDRRELASDIGGISKRISKVIQDMQSFGVQQIITDGSRSSHPLQERQ 147

Query:   119 RPPSSSVPTEREN 131
             R    +   + EN
Sbjct:   148 REMRHTFSRDSEN 160

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2176486 RPP8 "RECOGNITION OF PERONOSPORA PARASITICA 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 112 (44.5 bits), Expect = 0.00019, Sum P(2) = 0.00019
 Identities = 31/118 (26%), Positives = 61/118 (51%)

Query:     2 IQAVLSDAEEKRLTDEAVKMWLDELQDLAYDAEDILDGFGTQALESKLMAKNQDSTGQVL 61
             +Q++L DA+ K+   + V+ +L++++DL +DAEDI++ +    + +KL  K +     V 
Sbjct:    41 LQSLLKDADAKKHGSDRVRNFLEDVKDLVFDAEDIIESY----VLNKLSGKGKGVKKHVR 96

Query:    62 SFIPASLNPNAIMSNYSMGSKIKDITSRLEQLCQDRIELGLQRIAGGASSPTAAAHQR 119
                 A      +   + + S I+ IT R+ ++  +    G+Q+I  G  S +    QR
Sbjct:    97 RL--ACF----LTDRHKVASDIEGITKRISEVIGEMQSFGIQQIIDGGRSLSLQERQR 148

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0043531 "ADP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=ISS

GO:0009416 "response to light stimulus" evidence=IMP

GO:0051607 "defense response to virus" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0051707 "response to other organism" evidence=IMP

TAIR|locus:504956184 AT1G58807 "AT1G58807" [Arabidopsis thaliana (taxid:3702)]

 Score = 95 (38.5 bits), Expect = 0.00024, Sum P(2) = 0.00024
 Identities = 30/114 (26%), Positives = 56/114 (49%)

Query:     1 MIQAVLSDAEEKRLTDEAVKMWLDELQDLAYDAEDILDGFGTQALESKLMAKNQDSTGQV 60
             M+ + L DA  K+ T   VK  ++E++++ YD ED ++ F    LE  L  K       +
Sbjct:    40 MLSSFLKDANAKKHTSAVVKNCVEEIKEIIYDGEDTIETF---VLEQNL-GKTSGIKKSI 95

Query:    61 LSFIPASLNPNAIMSNYSMGSKIKDITSRLEQLCQDRIELGLQR--IAGGASSP 112
                  A + P+     Y++G  I  +++R+ ++ +D    G+Q+  + GG   P
Sbjct:    96 RRL--ACIIPDR--RRYALG--IGGLSNRISKVIRDMQSFGVQQAIVDGGYKQP 143

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2827038 AT1G59124 "AT1G59124" [Arabidopsis thaliana (taxid:3702)]

 Score = 95 (38.5 bits), Expect = 0.00024, Sum P(2) = 0.00024
 Identities = 30/114 (26%), Positives = 56/114 (49%)

Query:     1 MIQAVLSDAEEKRLTDEAVKMWLDELQDLAYDAEDILDGFGTQALESKLMAKNQDSTGQV 60
             M+ + L DA  K+ T   VK  ++E++++ YD ED ++ F    LE  L  K       +
Sbjct:    40 MLSSFLKDANAKKHTSAVVKNCVEEIKEIIYDGEDTIETF---VLEQNL-GKTSGIKKSI 95

Query:    61 LSFIPASLNPNAIMSNYSMGSKIKDITSRLEQLCQDRIELGLQR--IAGGASSP 112
                  A + P+     Y++G  I  +++R+ ++ +D    G+Q+  + GG   P
Sbjct:    96 RRL--ACIIPDR--RRYALG--IGGLSNRISKVIRDMQSFGVQQAIVDGGYKQP 143

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_I000308 hypothetical protein (695 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	498
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.83
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.82
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.74
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.73
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.64
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.58
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.53
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.51
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.48
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.41
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.38
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.31
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.29
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.23
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.16
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.13
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.12
KOG0617	264	consensus Ras suppressor protein (contains leucine	98.88
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.78
KOG4341	483	consensus F-box protein containing LRR [General fu	98.78
KOG0617	264	consensus Ras suppressor protein (contains leucine	98.7
PRK15386	426	type III secretion protein GogB; Provisional	98.67
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.38
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.36
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.33
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.33
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.27
KOG4341	483	consensus F-box protein containing LRR [General fu	98.27
PRK15386	426	type III secretion protein GogB; Provisional	98.25
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.22
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.18
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	97.94
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	97.76
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.7
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.59
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	97.46
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.32
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.32
PLN03150	623	hypothetical protein; Provisional	97.27
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	97.26
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.24
PLN03150	623	hypothetical protein; Provisional	97.17
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	97.16
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	97.15
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	96.94
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	96.9
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	96.76
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	96.67
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	96.65
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	96.61
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	96.34
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.03
KOG2982	418	consensus Uncharacterized conserved protein [Funct	95.84
KOG2982	418	consensus Uncharacterized conserved protein [Funct	95.83
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	95.75
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	95.45
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.44
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.2
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	94.35
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	94.15
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	93.24
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	93.12
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	93.11
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	92.65
KOG2123	388	consensus Uncharacterized conserved protein [Funct	92.59
KOG3864	221	consensus Uncharacterized conserved protein [Funct	92.33
KOG3864	221	consensus Uncharacterized conserved protein [Funct	91.65
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	88.81
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	88.35
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	87.21

>PLN03210 Resistant to P

Probab=99.83  E-value=3.4e-20  Score=207.94  Aligned_cols=307  Identities=16%  Similarity=0.185  Sum_probs=146.3

Q ss_pred             HHHhhcccCCcccEEEEecCCCCCCcChhhHHHhhhcCCC-CCCCceEEEeecCCCCCCccccC----------------
Q 048322          133 REAALCEKLNLHALTLEWGSQFDNSRDVAVEEHVLDILQP-HKCIKKVAIRNYGGARFPLWIGD----------------  195 (498)
Q Consensus       133 ~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~-~~~L~~L~l~~~~~~~~p~~~~~----------------  195 (498)
                      ....+.++.+|+.|.+..+....   .......+++++.. +.+|+.|.+.++....+|.++..                
T Consensus       550 ~~~aF~~m~~L~~L~~~~~~~~~---~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L  626 (1153)
T PLN03210        550 HENAFKGMRNLLFLKFYTKKWDQ---KKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKL  626 (1153)
T ss_pred             cHHHHhcCccccEEEEecccccc---cccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCcccccc
Confidence            34457789999999886442100   00001112222222 24566666666666666655430                


Q ss_pred             ----CCCCCccEEeEeCCCCCCCCCCCCCccccceeeccccccceecCccccCCCCCCCCCCCceeeccCCCcccccccc
Q 048322          196 ----PLFSKIEFLELENCNNCVSLPSLGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFENLPEWWHWDTD  271 (498)
Q Consensus       196 ----~~l~~L~~L~l~~c~~~~~lp~i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~  271 (498)
                          ..+++|+.|+|++|..++.+|.++.+++|+.|++.+|..+..+|..+.      .+++|+.|++.+|..++.++..
T Consensus       627 ~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~------~L~~L~~L~L~~c~~L~~Lp~~  700 (1153)
T PLN03210        627 WDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQ------YLNKLEDLDMSRCENLEILPTG  700 (1153)
T ss_pred             ccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhh------ccCCCCEEeCCCCCCcCccCCc
Confidence                124445555554444444444444455555555555554444443322      2455555555555444444321


Q ss_pred             ccCCccccCCCccceeeeccCCCccccCCCCcchHHHH-HHhcccccccCCC---CccccEEEecCCCcceecC------
Q 048322          272 IKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPSLEIL-VSKCEKLVVSLSS---YPRLCRLEVDECKELVCRT------  341 (498)
Q Consensus       272 ~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~L-i~~~~~l~~~~~~---l~~L~~L~l~~~~~~~~~~------  341 (498)
                      .  .     +++|+.|++++|..+. .+|....+|+.| +.++. +. .+|.   +++|++|.+.++....+..      
T Consensus       701 i--~-----l~sL~~L~Lsgc~~L~-~~p~~~~nL~~L~L~~n~-i~-~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~  770 (1153)
T PLN03210        701 I--N-----LKSLYRLNLSGCSRLK-SFPDISTNISWLDLDETA-IE-EFPSNLRLENLDELILCEMKSEKLWERVQPLT  770 (1153)
T ss_pred             C--C-----CCCCCEEeCCCCCCcc-ccccccCCcCeeecCCCc-cc-cccccccccccccccccccchhhccccccccc
Confidence            1  1     4455555555554443 444433444444 33322 11 1221   3334444333322111000      


Q ss_pred             ---CCCCCCccEEEEeccEe------eeecCCCCc----cCCCCCCcCCCC--CCCCCeEEecCC-CCCCC----CCccE
Q 048322          342 ---PIDSKLIKFMTISNSSL------DMIGCKGML----YDSQAGSSLPKP--MTTTNVLEFGKL-LEPGF----QILET  401 (498)
Q Consensus       342 ---~~~~~~L~~L~l~~~~l------~~~~~~~l~----~~~~~l~~lp~~--l~~L~~L~i~~~-~~~~l----p~L~~  401 (498)
                         ...+++|+.|++++|..      .+..++.|.    .+|..+..+|..  +++|+.|++++| ....+    ++|+.
T Consensus       771 ~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~  850 (1153)
T PLN03210        771 PLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISD  850 (1153)
T ss_pred             hhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccccccccCE
Confidence               00123455555544310      011111111    233334444332  234444444444 11111    12444


Q ss_pred             EEEcCCCCCCCccccCCCCccCCCCCCcCeEeeecCCCCCcCCCC-CccccccceeeccCchhHh
Q 048322          402 LVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPNLTLFPEV-GLPSSLLDLYVNNCPRLKK  465 (498)
Q Consensus       402 L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~~l~~lp~~-~~~~sL~~L~i~~c~~l~~  465 (498)
                      |++++ +.+      ..+|.++..+++|+.|++.+|++++.+|.. ..+++|+.+++++|++|+.
T Consensus       851 L~Ls~-n~i------~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~  908 (1153)
T PLN03210        851 LNLSR-TGI------EEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTE  908 (1153)
T ss_pred             eECCC-CCC------ccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccccc
Confidence            44433 122      234888888999999999999999998865 3457888899999988864

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.82  E-value=1.7e-19  Score=202.30  Aligned_cols=259  Identities=22%  Similarity=0.335  Sum_probs=181.9

Q ss_pred             HhhhcCCCCCCCceEEEeecC-CCCCCccccCCCCCCccEEeEeCCCCCCCCCC-CCCccccceeeccccccceecCccc
Q 048322          165 HVLDILQPHKCIKKVAIRNYG-GARFPLWIGDPLFSKIEFLELENCNNCVSLPS-LGLLSSLKHLAVKGLKKLKSIESEV  242 (498)
Q Consensus       165 ~~l~~l~~~~~L~~L~l~~~~-~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~-i~~l~~L~~L~l~~~~~l~~i~~~~  242 (498)
                      .++++++.+++|+.|+++++. ...+|. +.  .+++|+.|+|++|..+..+|. ++++++|+.|++++|..++.+|..+
T Consensus       625 ~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls--~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i  701 (1153)
T PLN03210        625 KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LS--MATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI  701 (1153)
T ss_pred             ccccccccCCCCCEEECCCCCCcCcCCc-cc--cCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC
Confidence            345667778999999999865 455665 44  589999999999999999997 9999999999999999999998643


Q ss_pred             cCCCCCCCCCCCceeeccCCCccccccccccCCccccCCCccceeeeccCCCccccCCCC--c-----------------
Q 048322          243 YGEGFSMPFPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPEL--L-----------------  303 (498)
Q Consensus       243 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~--l-----------------  303 (498)
                             .+++|+.|++++|..++.++..         ..+|+.|++.++. +. .+|..  +                 
T Consensus       702 -------~l~sL~~L~Lsgc~~L~~~p~~---------~~nL~~L~L~~n~-i~-~lP~~~~l~~L~~L~l~~~~~~~l~  763 (1153)
T PLN03210        702 -------NLKSLYRLNLSGCSRLKSFPDI---------STNISWLDLDETA-IE-EFPSNLRLENLDELILCEMKSEKLW  763 (1153)
T ss_pred             -------CCCCCCEEeCCCCCCccccccc---------cCCcCeeecCCCc-cc-cccccccccccccccccccchhhcc
Confidence                   3889999999998766554310         3455666665542 32 44432  2                 


Q ss_pred             --------------chHHHH-HHhccccc---ccCCCCccccEEEecCCCcce-ecCCCCCCCccEEEEeccEeeeecCC
Q 048322          304 --------------PSLEIL-VSKCEKLV---VSLSSYPRLCRLEVDECKELV-CRTPIDSKLIKFMTISNSSLDMIGCK  364 (498)
Q Consensus       304 --------------~~L~~L-i~~~~~l~---~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~~~~~  364 (498)
                                    ++|+.| +.+|+.+.   ..+..+++|+.|++++|..+. ++....+++|+.|+++          
T Consensus       764 ~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls----------  833 (1153)
T PLN03210        764 ERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLS----------  833 (1153)
T ss_pred             ccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECC----------
Confidence                          344445 44444322   122235666666666654433 3333345566666664          


Q ss_pred             CCccCCCCCCcCCCCCCCCCeEEecCC-------CCCCCCCccEEEEcCCCCCCCccccCCCCccCCCCCCcCeEeeecC
Q 048322          365 GMLYDSQAGSSLPKPMTTTNVLEFGKL-------LEPGFQILETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNC  437 (498)
Q Consensus       365 ~l~~~~~~l~~lp~~l~~L~~L~i~~~-------~~~~lp~L~~L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c  437 (498)
                          +|..+..+|....+|+.|+++++       .+..+++|+.|++.+|++++.+      |..+..+++|+.|++++|
T Consensus       834 ----~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l------~~~~~~L~~L~~L~l~~C  903 (1153)
T PLN03210        834 ----GCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRV------SLNISKLKHLETVDFSDC  903 (1153)
T ss_pred             ----CCCccccccccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCcc------CcccccccCCCeeecCCC
Confidence                45677788877789999999998       3456778999999999999765      778889999999999999


Q ss_pred             CCCCcCCCCCcc--------------ccccceeeccCchhH
Q 048322          438 PNLTLFPEVGLP--------------SSLLDLYVNNCPRLK  464 (498)
Q Consensus       438 ~~l~~lp~~~~~--------------~sL~~L~i~~c~~l~  464 (498)
                      +++..++-...+              ++...+.+.+|.+|.
T Consensus       904 ~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~  944 (1153)
T PLN03210        904 GALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLD  944 (1153)
T ss_pred             cccccccCCCCchhhhhhcccccccCCchhccccccccCCC
Confidence            999876532222              222345677787664

syringae 6; Provisional

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.74  E-value=4.7e-18  Score=190.06  Aligned_cols=111  Identities=17%  Similarity=0.134  Sum_probs=74.2

Q ss_pred             HhhcccCCcccEEEEecCCCCCCcChhhHHHhhhcCCCCCCCceEEEeecCCC-CCCccccCCCCCCccEEeEeCCCCCC
Q 048322          135 AALCEKLNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGA-RFPLWIGDPLFSKIEFLELENCNNCV  213 (498)
Q Consensus       135 ~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~-~~p~~~~~~~l~~L~~L~l~~c~~~~  213 (498)
                      ..+.++++|+.|+++++.-         ...++..+..+++|++|+++++... .+|.++.  .+++|++|++++|....
T Consensus       254 ~~l~~l~~L~~L~L~~n~l---------~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~--~l~~L~~L~l~~n~~~~  322 (968)
T PLN00113        254 SSLGNLKNLQYLFLYQNKL---------SGPIPPSIFSLQKLISLDLSDNSLSGEIPELVI--QLQNLEILHLFSNNFTG  322 (968)
T ss_pred             hhHhCCCCCCEEECcCCee---------eccCchhHhhccCcCEEECcCCeeccCCChhHc--CCCCCcEEECCCCccCC
Confidence            4577888999999987642         1112334455678888888877643 5677766  57788888888776656


Q ss_pred             CCCC-CCCccccceeeccccccceecCccccCCCCCCCCCCCceeeccCC
Q 048322          214 SLPS-LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFENL  262 (498)
Q Consensus       214 ~lp~-i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~  262 (498)
                      .+|. ++.+++|+.|++++|.-...+|..+.      .+++|+.|+++++
T Consensus       323 ~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~------~~~~L~~L~Ls~n  366 (968)
T PLN00113        323 KIPVALTSLPRLQVLQLWSNKFSGEIPKNLG------KHNNLTVLDLSTN  366 (968)
T ss_pred             cCChhHhcCCCCCEEECcCCCCcCcCChHHh------CCCCCcEEECCCC
Confidence            6665 77788888888877654344554332      3667777777655

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.73  E-value=6.3e-18  Score=189.05  Aligned_cols=76  Identities=13%  Similarity=0.143  Sum_probs=50.7

Q ss_pred             CCCCeEEecCC--------CCCCCCCccEEEEcCCCCCCCccccCCCCccCCCCCCcCeEeeecCCCCCcCCCC-Ccccc
Q 048322          381 TTTNVLEFGKL--------LEPGFQILETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPNLTLFPEV-GLPSS  451 (498)
Q Consensus       381 ~~L~~L~i~~~--------~~~~lp~L~~L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~~l~~lp~~-~~~~s  451 (498)
                      ++|+.|++++|        .++.+++|++|++++|.-...      +|..+..+++|++|++++|.....+|.. ..+++
T Consensus       499 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~------~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~  572 (968)
T PLN00113        499 SELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQ------IPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVES  572 (968)
T ss_pred             hccCEEECcCCcceeeCChHHcCccCCCEEECCCCccccc------CChhHhCcccCCEEECCCCcccccCChhHhcCcc
Confidence            56666666666        234456677777766442221      3777778888888888887766677764 34578


Q ss_pred             ccceeeccCch
Q 048322          452 LLDLYVNNCPR  462 (498)
Q Consensus       452 L~~L~i~~c~~  462 (498)
                      |+.|++++|+-
T Consensus       573 L~~l~ls~N~l  583 (968)
T PLN00113        573 LVQVNISHNHL  583 (968)
T ss_pred             cCEEeccCCcc
Confidence            88888888763

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.64  E-value=2.8e-18  Score=167.83  Aligned_cols=259  Identities=22%  Similarity=0.230  Sum_probs=121.7

Q ss_pred             hhcccCCcccEEEEecCCCCCCcChhhHHHhhhcCCCCCCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCC
Q 048322          136 ALCEKLNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSL  215 (498)
Q Consensus       136 ~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l  215 (498)
                      ++..++.|..|+|+.|.          ..+++..|..-.++-+|+++++.+.++|..+.. .+..|-.|+|++ +.+..+
T Consensus        98 diF~l~dLt~lDLShNq----------L~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfi-nLtDLLfLDLS~-NrLe~L  165 (1255)
T KOG0444|consen   98 DIFRLKDLTILDLSHNQ----------LREVPTNLEYAKNSIVLNLSYNNIETIPNSLFI-NLTDLLFLDLSN-NRLEML  165 (1255)
T ss_pred             hhcccccceeeecchhh----------hhhcchhhhhhcCcEEEEcccCccccCCchHHH-hhHhHhhhcccc-chhhhc
Confidence            34445555555554442          233444444445555566665555555555432 345555555555 345555


Q ss_pred             CC-CCCccccceeecccccc----ceecCccccCCCCCCCCCCCceeeccCCCc-cccccccccCCccccCCCccceeee
Q 048322          216 PS-LGLLSSLKHLAVKGLKK----LKSIESEVYGEGFSMPFPSLKILRFENLPE-WWHWDTDIKGNVHVDIFPRLQELSV  289 (498)
Q Consensus       216 p~-i~~l~~L~~L~l~~~~~----l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~-l~~~~~~~~~~~~~~~l~~L~~L~l  289 (498)
                      |+ +..|.+|+.|.+++++.    +..+|          .+++|+.|.+++... +..+++..      ..+.+|..+++
T Consensus       166 PPQ~RRL~~LqtL~Ls~NPL~hfQLrQLP----------smtsL~vLhms~TqRTl~N~Ptsl------d~l~NL~dvDl  229 (1255)
T KOG0444|consen  166 PPQIRRLSMLQTLKLSNNPLNHFQLRQLP----------SMTSLSVLHMSNTQRTLDNIPTSL------DDLHNLRDVDL  229 (1255)
T ss_pred             CHHHHHHhhhhhhhcCCChhhHHHHhcCc----------cchhhhhhhcccccchhhcCCCch------hhhhhhhhccc
Confidence            55 55555566665555421    11122          233444444433211 11111111      11444444444


Q ss_pred             ccCCCccccCCCCcchHHHHHHhcccccccCCCCccccEEEecCCCcceecCCC-CCCCccEEEEeccEeeeecCCCCcc
Q 048322          290 VKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSYPRLCRLEVDECKELVCRTPI-DSKLIKFMTISNSSLDMIGCKGMLY  368 (498)
Q Consensus       290 ~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~l~~~~~~~l~~  368 (498)
                      +.+ ++. .+|+++-+                 +++|++|++++|....+.... ...+|++|+++.|            
T Consensus       230 S~N-~Lp-~vPecly~-----------------l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrN------------  278 (1255)
T KOG0444|consen  230 SEN-NLP-IVPECLYK-----------------LRNLRRLNLSGNKITELNMTEGEWENLETLNLSRN------------  278 (1255)
T ss_pred             ccc-CCC-cchHHHhh-----------------hhhhheeccCcCceeeeeccHHHHhhhhhhccccc------------
Confidence            422 333 34433222                 445555555555444332211 1344555555443            


Q ss_pred             CCCCCCcCCCCC---CCCCeEEecCC--CCCCCCC-------ccEEEEcCCCCCCCccccCCCCccCCCCCCcCeEeeec
Q 048322          369 DSQAGSSLPKPM---TTTNVLEFGKL--LEPGFQI-------LETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWN  436 (498)
Q Consensus       369 ~~~~l~~lp~~l---~~L~~L~i~~~--~~~~lp~-------L~~L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~  436 (498)
                         .|+.+|..+   +.|+.|.+.+|  .+.++|+       |+.+...+ ++|.-.      |+++..+..|+.|.++ 
T Consensus       279 ---QLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aan-N~LElV------PEglcRC~kL~kL~L~-  347 (1255)
T KOG0444|consen  279 ---QLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAAN-NKLELV------PEGLCRCVKLQKLKLD-  347 (1255)
T ss_pred             ---hhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhc-cccccC------chhhhhhHHHHHhccc-
Confidence               344444333   44555555554  2333332       44444443 333322      6666666677777664 


Q ss_pred             CCCCCcCCCC-CccccccceeeccCchhH
Q 048322          437 CPNLTLFPEV-GLPSSLLDLYVNNCPRLK  464 (498)
Q Consensus       437 c~~l~~lp~~-~~~~sL~~L~i~~c~~l~  464 (498)
                      |+.+..+|+. .+++-|+.|++...|+|.
T Consensus       348 ~NrLiTLPeaIHlL~~l~vLDlreNpnLV  376 (1255)
T KOG0444|consen  348 HNRLITLPEAIHLLPDLKVLDLRENPNLV  376 (1255)
T ss_pred             ccceeechhhhhhcCCcceeeccCCcCcc
Confidence            3566666665 555667777777766664

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.58  E-value=4.7e-17  Score=159.38  Aligned_cols=281  Identities=17%  Similarity=0.230  Sum_probs=192.0

Q ss_pred             HhhcccCCcccEEEEecCCCCCCcChhhHHHhhhcCCCCCCCceEEEeecC--CCCCCccccCCCCCCccEEeEeCCCCC
Q 048322          135 AALCEKLNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYG--GARFPLWIGDPLFSKIEFLELENCNNC  212 (498)
Q Consensus       135 ~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~--~~~~p~~~~~~~l~~L~~L~l~~c~~~  212 (498)
                      .++..+.+|+.|.+..|.          ...+...|..++.|+.+.++.+.  ...+|..+.  .+..|..|+|+.+ .+
T Consensus        49 eEL~~lqkLEHLs~~HN~----------L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF--~l~dLt~lDLShN-qL  115 (1255)
T KOG0444|consen   49 EELSRLQKLEHLSMAHNQ----------LISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIF--RLKDLTILDLSHN-QL  115 (1255)
T ss_pred             HHHHHHhhhhhhhhhhhh----------hHhhhhhhccchhhHHHhhhccccccCCCCchhc--ccccceeeecchh-hh
Confidence            456666777777665543          34455566666778888777665  344677666  5788888888884 67


Q ss_pred             CCCCC-CCCccccceeeccccccceecCccccCCCCCCCCCCCceeeccCCCccccccccccCCccccCCCccceeeecc
Q 048322          213 VSLPS-LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVK  291 (498)
Q Consensus       213 ~~lp~-i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~  291 (498)
                      +..|. +..-+++-.|++++ ++++.||...|-     .++.|-.|+++++ .++..+|.+..      +.+|++|.+++
T Consensus       116 ~EvP~~LE~AKn~iVLNLS~-N~IetIPn~lfi-----nLtDLLfLDLS~N-rLe~LPPQ~RR------L~~LqtL~Ls~  182 (1255)
T KOG0444|consen  116 REVPTNLEYAKNSIVLNLSY-NNIETIPNSLFI-----NLTDLLFLDLSNN-RLEMLPPQIRR------LSMLQTLKLSN  182 (1255)
T ss_pred             hhcchhhhhhcCcEEEEccc-CccccCCchHHH-----hhHhHhhhccccc-hhhhcCHHHHH------HhhhhhhhcCC
Confidence            78886 77788888888887 568888877664     4667777777765 55555544332      77889999998


Q ss_pred             CCCcc---ccCCCCcchHHHH-HHhcccccccCC----CCccccEEEecCCCcceecC-CCCCCCccEEEEeccEeeeec
Q 048322          292 CPKLS---GKLPELLPSLEIL-VSKCEKLVVSLS----SYPRLCRLEVDECKELVCRT-PIDSKLIKFMTISNSSLDMIG  362 (498)
Q Consensus       292 c~~l~---~~lp~~l~~L~~L-i~~~~~l~~~~~----~l~~L~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~l~~~~  362 (498)
                      +|-..   .++|. +.+|+.| +++......-+|    .+.+|..++++.|....+|. ...+++|+.|++++|.+.-.+
T Consensus       183 NPL~hfQLrQLPs-mtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~  261 (1255)
T KOG0444|consen  183 NPLNHFQLRQLPS-MTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELN  261 (1255)
T ss_pred             ChhhHHHHhcCcc-chhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeee
Confidence            86432   24553 5666666 666654333344    48899999999887766654 345899999999988443321


Q ss_pred             CCCCccCCCCCCcCCCCCCCCCeEEecCCC-------CCCCCCccEEEEcCCCCCCCccccCCCCccCCCCCCcCeEeee
Q 048322          363 CKGMLYDSQAGSSLPKPMTTTNVLEFGKLL-------EPGFQILETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIW  435 (498)
Q Consensus       363 ~~~l~~~~~~l~~lp~~l~~L~~L~i~~~~-------~~~lp~L~~L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~  435 (498)
                      ..            -....+|++|+++.|.       +..++.|+.|.+.+ ++|+    ++++|.+++.|.+|+.+...
T Consensus       262 ~~------------~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~-NkL~----FeGiPSGIGKL~~Levf~aa  324 (1255)
T KOG0444|consen  262 MT------------EGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANN-NKLT----FEGIPSGIGKLIQLEVFHAA  324 (1255)
T ss_pred             cc------------HHHHhhhhhhccccchhccchHHHhhhHHHHHHHhcc-Cccc----ccCCccchhhhhhhHHHHhh
Confidence            10            0122789999999983       44566688888866 4453    23459999999999999998


Q ss_pred             cCCCCCcCCCC-CccccccceeeccC
Q 048322          436 NCPNLTLFPEV-GLPSSLLDLYVNNC  460 (498)
Q Consensus       436 ~c~~l~~lp~~-~~~~sL~~L~i~~c  460 (498)
                      + +++.-+|++ .....|+.|.++..
T Consensus       325 n-N~LElVPEglcRC~kL~kL~L~~N  349 (1255)
T KOG0444|consen  325 N-NKLELVPEGLCRCVKLQKLKLDHN  349 (1255)
T ss_pred             c-cccccCchhhhhhHHHHHhccccc
Confidence            7 688888874 23356666666543

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.53  E-value=3.2e-15  Score=145.65  Aligned_cols=145  Identities=15%  Similarity=0.240  Sum_probs=62.8

Q ss_pred             CCCccEEeEeCCCCCCCCCC--CCCccccceeeccccccceecCccccCCCCCCCCCCCceeeccCCCccccccccccCC
Q 048322          198 FSKIEFLELENCNNCVSLPS--LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFENLPEWWHWDTDIKGN  275 (498)
Q Consensus       198 l~~L~~L~l~~c~~~~~lp~--i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~  275 (498)
                      ++-|++|+|+.+ .+..+|.  +..=.++++|++.+ +.++.+....|.     .+.+|-.|.++++ .++.++...   
T Consensus       148 l~alrslDLSrN-~is~i~~~sfp~~~ni~~L~La~-N~It~l~~~~F~-----~lnsL~tlkLsrN-rittLp~r~---  216 (873)
T KOG4194|consen  148 LPALRSLDLSRN-LISEIPKPSFPAKVNIKKLNLAS-NRITTLETGHFD-----SLNSLLTLKLSRN-RITTLPQRS---  216 (873)
T ss_pred             Hhhhhhhhhhhc-hhhcccCCCCCCCCCceEEeecc-cccccccccccc-----ccchheeeecccC-cccccCHHH---
Confidence            344444444442 3333332  33334455555554 234444443332     2444555555433 222222111   


Q ss_pred             ccccCCCccceeeeccCCCcc---ccCCCCcchHHHH-HHhcc--cccc-cCCCCccccEEEecCCCccee--cCCCCCC
Q 048322          276 VHVDIFPRLQELSVVKCPKLS---GKLPELLPSLEIL-VSKCE--KLVV-SLSSYPRLCRLEVDECKELVC--RTPIDSK  346 (498)
Q Consensus       276 ~~~~~l~~L~~L~l~~c~~l~---~~lp~~l~~L~~L-i~~~~--~l~~-~~~~l~~L~~L~l~~~~~~~~--~~~~~~~  346 (498)
                        +..+|+|+.|++..+. ++   +.--.++++|+.| +....  .+.+ .|-.+.++++|++..|....+  .+.++++
T Consensus       217 --Fk~L~~L~~LdLnrN~-irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt  293 (873)
T KOG4194|consen  217 --FKRLPKLESLDLNRNR-IRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLT  293 (873)
T ss_pred             --hhhcchhhhhhccccc-eeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccc
Confidence              1225666666665441 11   0001234555555 33321  1221 122255666666665554432  2344566


Q ss_pred             CccEEEEecc
Q 048322          347 LIKFMTISNS  356 (498)
Q Consensus       347 ~L~~L~l~~~  356 (498)
                      +|+.|++++|
T Consensus       294 ~L~~L~lS~N  303 (873)
T KOG4194|consen  294 SLEQLDLSYN  303 (873)
T ss_pred             hhhhhccchh
Confidence            6666666666

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.51  E-value=1.5e-13  Score=144.44  Aligned_cols=249  Identities=23%  Similarity=0.188  Sum_probs=163.9

Q ss_pred             CCcccEEEEecCCCCCCcChhhHHHhhhcCCCCCCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCCCCC
Q 048322          141 LNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPSLGL  220 (498)
Q Consensus       141 ~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~i~~  220 (498)
                      ..-..|+++.+.-          ..++..+  +.+|+.|.+.+|....+|.     .+++|++|++++| .++.+|..  
T Consensus       201 ~~~~~LdLs~~~L----------tsLP~~l--~~~L~~L~L~~N~Lt~LP~-----lp~~Lk~LdLs~N-~LtsLP~l--  260 (788)
T PRK15387        201 NGNAVLNVGESGL----------TTLPDCL--PAHITTLVIPDNNLTSLPA-----LPPELRTLEVSGN-QLTSLPVL--  260 (788)
T ss_pred             CCCcEEEcCCCCC----------CcCCcch--hcCCCEEEccCCcCCCCCC-----CCCCCcEEEecCC-ccCcccCc--
Confidence            4456677766541          1133333  2478899999888888875     2578999999885 67778753  


Q ss_pred             ccccceeeccccccceecCccccCCCCCCCCCCCceeeccCCCccccccccccCCccccCCCccceeeeccCCCccccCC
Q 048322          221 LSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLP  300 (498)
Q Consensus       221 l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp  300 (498)
                      .++|+.|++.++ .+..+|.         .+.+|+.|++.++ .++.++.    .     +++|+.|++++| .++ .+|
T Consensus       261 p~sL~~L~Ls~N-~L~~Lp~---------lp~~L~~L~Ls~N-~Lt~LP~----~-----p~~L~~LdLS~N-~L~-~Lp  318 (788)
T PRK15387        261 PPGLLELSIFSN-PLTHLPA---------LPSGLCKLWIFGN-QLTSLPV----L-----PPGLQELSVSDN-QLA-SLP  318 (788)
T ss_pred             ccccceeeccCC-chhhhhh---------chhhcCEEECcCC-ccccccc----c-----ccccceeECCCC-ccc-cCC
Confidence            468888888875 4666664         2457888888776 4444331    1     578999999987 665 677


Q ss_pred             CCcchHHHH-HHhcccccccCCCC-ccccEEEecCCCcceecCCCCCCCccEEEEeccEeeeecCCCCccCCCCCCcCCC
Q 048322          301 ELLPSLEIL-VSKCEKLVVSLSSY-PRLCRLEVDECKELVCRTPIDSKLIKFMTISNSSLDMIGCKGMLYDSQAGSSLPK  378 (498)
Q Consensus       301 ~~l~~L~~L-i~~~~~l~~~~~~l-~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~l~~lp~  378 (498)
                      ..+.+|+.| +.+|. +. .+|.+ .+|+.|++++|....++..  +++|+.|++++|               .+..+|.
T Consensus       319 ~lp~~L~~L~Ls~N~-L~-~LP~lp~~Lq~LdLS~N~Ls~LP~l--p~~L~~L~Ls~N---------------~L~~LP~  379 (788)
T PRK15387        319 ALPSELCKLWAYNNQ-LT-SLPTLPSGLQELSVSDNQLASLPTL--PSELYKLWAYNN---------------RLTSLPA  379 (788)
T ss_pred             CCcccccccccccCc-cc-cccccccccceEecCCCccCCCCCC--Ccccceehhhcc---------------ccccCcc
Confidence            766678888 66543 33 45653 4799999998876665542  567888888765               3445555


Q ss_pred             CCCCCCeEEecCCCCCCCC----CccEEEEcCCCCCCCccccCCCCccCCCCCCcCeEeeecCCCCCcCCCC-Ccccccc
Q 048322          379 PMTTTNVLEFGKLLEPGFQ----ILETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPNLTLFPEV-GLPSSLL  453 (498)
Q Consensus       379 ~l~~L~~L~i~~~~~~~lp----~L~~L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~~l~~lp~~-~~~~sL~  453 (498)
                      ...+|+.|++++|.+..+|    .|+.|+++++ .++.+      |..   ..+|+.|++++ ++++.+|.. ..+++|+
T Consensus       380 l~~~L~~LdLs~N~Lt~LP~l~s~L~~LdLS~N-~LssI------P~l---~~~L~~L~Ls~-NqLt~LP~sl~~L~~L~  448 (788)
T PRK15387        380 LPSGLKELIVSGNRLTSLPVLPSELKELMVSGN-RLTSL------PML---PSGLLSLSVYR-NQLTRLPESLIHLSSET  448 (788)
T ss_pred             cccccceEEecCCcccCCCCcccCCCEEEccCC-cCCCC------Ccc---hhhhhhhhhcc-CcccccChHHhhccCCC
Confidence            5567888888887443333    3778888774 34433      432   23566777776 466777754 3346777


Q ss_pred             ceeeccCc
Q 048322          454 DLYVNNCP  461 (498)
Q Consensus       454 ~L~i~~c~  461 (498)
                      .|++++++
T Consensus       449 ~LdLs~N~  456 (788)
T PRK15387        449 TVNLEGNP  456 (788)
T ss_pred             eEECCCCC
Confidence            77777765

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.48  E-value=2.2e-14  Score=139.95  Aligned_cols=257  Identities=16%  Similarity=0.221  Sum_probs=162.5

Q ss_pred             cccEEEEecCCCCCCcChhhHHHhhhcCCCCCCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCC--CCC
Q 048322          143 LHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPS--LGL  220 (498)
Q Consensus       143 L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~--i~~  220 (498)
                      -+.|+++.|.-      ....   ++.+.++++|+.+.+..|....+|....  ...+|+.|+|.++ .+..+.+  +..
T Consensus        80 t~~LdlsnNkl------~~id---~~~f~nl~nLq~v~l~~N~Lt~IP~f~~--~sghl~~L~L~~N-~I~sv~se~L~~  147 (873)
T KOG4194|consen   80 TQTLDLSNNKL------SHID---FEFFYNLPNLQEVNLNKNELTRIPRFGH--ESGHLEKLDLRHN-LISSVTSEELSA  147 (873)
T ss_pred             eeeeecccccc------ccCc---HHHHhcCCcceeeeeccchhhhcccccc--cccceeEEeeecc-ccccccHHHHHh
Confidence            34588877641      1112   3344556999999999999999999776  4678999999985 5555554  778


Q ss_pred             ccccceeeccccccceecCccccCCCCCCCCCCCceeeccCCCccccccccccCCccccCCCccceeeeccCCCccccCC
Q 048322          221 LSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLP  300 (498)
Q Consensus       221 l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp  300 (498)
                      ++.|+.|+++. +.+.+++..-|.     .-.++++|++.++ .++.+..+.     +..+.+|-+|.++.+ .++ .+|
T Consensus       148 l~alrslDLSr-N~is~i~~~sfp-----~~~ni~~L~La~N-~It~l~~~~-----F~~lnsL~tlkLsrN-rit-tLp  213 (873)
T KOG4194|consen  148 LPALRSLDLSR-NLISEIPKPSFP-----AKVNIKKLNLASN-RITTLETGH-----FDSLNSLLTLKLSRN-RIT-TLP  213 (873)
T ss_pred             Hhhhhhhhhhh-chhhcccCCCCC-----CCCCceEEeeccc-ccccccccc-----ccccchheeeecccC-ccc-ccC
Confidence            89999999998 468888865443     3467999999876 444443222     233789999999987 454 777


Q ss_pred             C----CcchHHHH-HHhcc-cccc--cCCCCccccEEEecCCCcceecCCC--CCCCccEEEEeccEeeeecCCCCccCC
Q 048322          301 E----LLPSLEIL-VSKCE-KLVV--SLSSYPRLCRLEVDECKELVCRTPI--DSKLIKFMTISNSSLDMIGCKGMLYDS  370 (498)
Q Consensus       301 ~----~l~~L~~L-i~~~~-~l~~--~~~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~l~~~~~~~l~~~~  370 (498)
                      .    .++.|++| +.... .+..  .|..+++|+.|.+..|+...+..+.  .+.++++|++..|.+.-.+-..     
T Consensus       214 ~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~-----  288 (873)
T KOG4194|consen  214 QRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGW-----  288 (873)
T ss_pred             HHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhccc-----
Confidence            4    34566666 33221 1111  3455899999999988877655443  3889999999887332211100     


Q ss_pred             CCCCcCCCCCCCCCeEEecCC--------CCCCCCCccEEEEcCCCCCCCccccCCCCccCCCCCCcCeEeeecCCCCCc
Q 048322          371 QAGSSLPKPMTTTNVLEFGKL--------LEPGFQILETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPNLTL  442 (498)
Q Consensus       371 ~~l~~lp~~l~~L~~L~i~~~--------~~~~lp~L~~L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~~l~~  442 (498)
                            --++..|+.|++++|        .....++|+.|++++ +.++.+.     ++.+..|++|++|.+++ +.+.+
T Consensus       289 ------lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~-N~i~~l~-----~~sf~~L~~Le~LnLs~-Nsi~~  355 (873)
T KOG4194|consen  289 ------LFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSS-NRITRLD-----EGSFRVLSQLEELNLSH-NSIDH  355 (873)
T ss_pred             ------ccccchhhhhccchhhhheeecchhhhcccceeEeccc-cccccCC-----hhHHHHHHHhhhhcccc-cchHH
Confidence                  012366777777777        122345677777766 4444331     23344445555555544 24444


Q ss_pred             C
Q 048322          443 F  443 (498)
Q Consensus       443 l  443 (498)
                      +
T Consensus       356 l  356 (873)
T KOG4194|consen  356 L  356 (873)
T ss_pred             H
Confidence            3

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.41  E-value=1.3e-12  Score=137.42  Aligned_cols=227  Identities=25%  Similarity=0.253  Sum_probs=169.1

Q ss_pred             CCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCCCCCccccceeeccccccceecCccccCCCCCCCCCC
Q 048322          174 KCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPSLGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPS  253 (498)
Q Consensus       174 ~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~  253 (498)
                      .+-..|++++++...+|..+.    ++|+.|++.+| .++.+|..  +++|++|+++++ .++.+|.         .+++
T Consensus       201 ~~~~~LdLs~~~LtsLP~~l~----~~L~~L~L~~N-~Lt~LP~l--p~~Lk~LdLs~N-~LtsLP~---------lp~s  263 (788)
T PRK15387        201 NGNAVLNVGESGLTTLPDCLP----AHITTLVIPDN-NLTSLPAL--PPELRTLEVSGN-QLTSLPV---------LPPG  263 (788)
T ss_pred             CCCcEEEcCCCCCCcCCcchh----cCCCEEEccCC-cCCCCCCC--CCCCcEEEecCC-ccCcccC---------cccc
Confidence            456789999999999998764    47999999984 78888863  589999999985 6888874         2578


Q ss_pred             CceeeccCCCccccccccccCCccccCCCccceeeeccCCCccccCCCCcchHHHH-HHhcccccccCCC-CccccEEEe
Q 048322          254 LKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPSLEIL-VSKCEKLVVSLSS-YPRLCRLEV  331 (498)
Q Consensus       254 L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~L-i~~~~~l~~~~~~-l~~L~~L~l  331 (498)
                      |+.|++.++ .+..+..    .     +.+|+.|++++| .++ .+|..+++|+.| ++++ .+. .+|. ..+|+.|.+
T Consensus       264 L~~L~Ls~N-~L~~Lp~----l-----p~~L~~L~Ls~N-~Lt-~LP~~p~~L~~LdLS~N-~L~-~Lp~lp~~L~~L~L  329 (788)
T PRK15387        264 LLELSIFSN-PLTHLPA----L-----PSGLCKLWIFGN-QLT-SLPVLPPGLQELSVSDN-QLA-SLPALPSELCKLWA  329 (788)
T ss_pred             cceeeccCC-chhhhhh----c-----hhhcCEEECcCC-ccc-cccccccccceeECCCC-ccc-cCCCCccccccccc
Confidence            999999876 3444331    1     568999999998 666 788877889988 7765 444 4454 457888999


Q ss_pred             cCCCcceecCCCCCCCccEEEEeccEeeeecCCCCccCCCCCCcCCCCCCCCCeEEecCCCCCCCC----CccEEEEcCC
Q 048322          332 DECKELVCRTPIDSKLIKFMTISNSSLDMIGCKGMLYDSQAGSSLPKPMTTTNVLEFGKLLEPGFQ----ILETLVIGNS  407 (498)
Q Consensus       332 ~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~l~~lp~~l~~L~~L~i~~~~~~~lp----~L~~L~l~~c  407 (498)
                      .+|....++.  .+.+|+.|++++|               +++.+|...++|+.|++++|.+..+|    +|+.|+++++
T Consensus       330 s~N~L~~LP~--lp~~Lq~LdLS~N---------------~Ls~LP~lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N  392 (788)
T PRK15387        330 YNNQLTSLPT--LPSGLQELSVSDN---------------QLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGN  392 (788)
T ss_pred             ccCccccccc--cccccceEecCCC---------------ccCCCCCCCcccceehhhccccccCcccccccceEEecCC
Confidence            8887665553  2468999999876               55666665578999999988444444    4999999884


Q ss_pred             CCCCCccccCCCCccCCCCCCcCeEeeecCCCCCcCCCCCccccccceeeccCc
Q 048322          408 EQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPNLTLFPEVGLPSSLLDLYVNNCP  461 (498)
Q Consensus       408 ~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~sL~~L~i~~c~  461 (498)
                       .++.+      |..   .++|+.|+++++ .+.++|.  .+.+|+.|+++++.
T Consensus       393 -~Lt~L------P~l---~s~L~~LdLS~N-~LssIP~--l~~~L~~L~Ls~Nq  433 (788)
T PRK15387        393 -RLTSL------PVL---PSELKELMVSGN-RLTSLPM--LPSGLLSLSVYRNQ  433 (788)
T ss_pred             -cccCC------CCc---ccCCCEEEccCC-cCCCCCc--chhhhhhhhhccCc
Confidence             45543      543   357999999995 6888886  46788888888763

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.38  E-value=2.8e-15  Score=139.96  Aligned_cols=79  Identities=19%  Similarity=0.302  Sum_probs=58.6

Q ss_pred             CCCCeEEecCC-------CCCCCCCccEEEEcCCCCCCCc-----------------cccCCC-CccCCCCCCcCeEeee
Q 048322          381 TTTNVLEFGKL-------LEPGFQILETLVIGNSEQLKPW-----------------RQGRGL-SMGFQRLTSLQSLKIW  435 (498)
Q Consensus       381 ~~L~~L~i~~~-------~~~~lp~L~~L~l~~c~~L~~l-----------------~~l~~l-~~~l~~l~~L~~L~l~  435 (498)
                      ++|..|++++|       ..+++-.||.|+|+.. ....+                 .++..+ |+++.++.+|..|++.
T Consensus       435 ~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~N-rFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~  513 (565)
T KOG0472|consen  435 QKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFN-RFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQ  513 (565)
T ss_pred             hcceeeecccchhhhcchhhhhhhhhheeccccc-ccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccC
Confidence            77888888888       3445556999998874 23211                 122233 4468899999999998


Q ss_pred             cCCCCCcCCCC-CccccccceeeccCc
Q 048322          436 NCPNLTLFPEV-GLPSSLLDLYVNNCP  461 (498)
Q Consensus       436 ~c~~l~~lp~~-~~~~sL~~L~i~~c~  461 (498)
                      + +.+..+|.. |..++|++|++++.|
T Consensus       514 n-Ndlq~IPp~LgnmtnL~hLeL~gNp  539 (565)
T KOG0472|consen  514 N-NDLQQIPPILGNMTNLRHLELDGNP  539 (565)
T ss_pred             C-CchhhCChhhccccceeEEEecCCc
Confidence            7 688899876 788999999999987

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.31  E-value=1e-11  Score=131.42  Aligned_cols=217  Identities=16%  Similarity=0.186  Sum_probs=119.5

Q ss_pred             CCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCC-CCCccccceeeccccccceecCccccCCCCCCCCC
Q 048322          174 KCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPS-LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFP  252 (498)
Q Consensus       174 ~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~-i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~  252 (498)
                      ++|+.|++++|....+|..+.    ++|+.|++++| .++.+|. +  .++|+.|++++| .+..+|..+        ..
T Consensus       199 ~~L~~L~Ls~N~LtsLP~~l~----~nL~~L~Ls~N-~LtsLP~~l--~~~L~~L~Ls~N-~L~~LP~~l--------~s  262 (754)
T PRK15370        199 EQITTLILDNNELKSLPENLQ----GNIKTLYANSN-QLTSIPATL--PDTIQEMELSIN-RITELPERL--------PS  262 (754)
T ss_pred             cCCcEEEecCCCCCcCChhhc----cCCCEEECCCC-ccccCChhh--hccccEEECcCC-ccCcCChhH--------hC
Confidence            467777777777777776543    46777777765 4566664 2  236777777775 355666432        23


Q ss_pred             CCceeeccCCCccccccccccCCccccCCCccceeeeccCCCccccCCCCc-chHHHH-HHhcccccccCCC--CccccE
Q 048322          253 SLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELL-PSLEIL-VSKCEKLVVSLSS--YPRLCR  328 (498)
Q Consensus       253 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l-~~L~~L-i~~~~~l~~~~~~--l~~L~~  328 (498)
                      +|+.|+++++ .+..++...        .++|+.|++++| +++ .+|..+ ++|+.| +.++. +. .+|.  .++|+.
T Consensus       263 ~L~~L~Ls~N-~L~~LP~~l--------~~sL~~L~Ls~N-~Lt-~LP~~lp~sL~~L~Ls~N~-Lt-~LP~~l~~sL~~  329 (754)
T PRK15370        263 ALQSLDLFHN-KISCLPENL--------PEELRYLSVYDN-SIR-TLPAHLPSGITHLNVQSNS-LT-ALPETLPPGLKT  329 (754)
T ss_pred             CCCEEECcCC-ccCcccccc--------CCCCcEEECCCC-ccc-cCcccchhhHHHHHhcCCc-cc-cCCcccccccee
Confidence            6777777644 444432111        347788888777 565 566544 356666 55542 22 2332  456777


Q ss_pred             EEecCCCcceecCCCCCCCccEEEEeccEeeeecCCCCccCCCCCCcCCCCC-CCCCeEEecCCCCCCCCC-----ccEE
Q 048322          329 LEVDECKELVCRTPIDSKLIKFMTISNSSLDMIGCKGMLYDSQAGSSLPKPM-TTTNVLEFGKLLEPGFQI-----LETL  402 (498)
Q Consensus       329 L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~l~~lp~~l-~~L~~L~i~~~~~~~lp~-----L~~L  402 (498)
                      |++++|....++... +++|+.|++++|               .+..+|..+ ++|+.|++++|.+..+|.     |+.|
T Consensus       330 L~Ls~N~Lt~LP~~l-~~sL~~L~Ls~N---------------~L~~LP~~lp~~L~~LdLs~N~Lt~LP~~l~~sL~~L  393 (754)
T PRK15370        330 LEAGENALTSLPASL-PPELQVLDVSKN---------------QITVLPETLPPTITTLDVSRNALTNLPENLPAALQIM  393 (754)
T ss_pred             ccccCCccccCChhh-cCcccEEECCCC---------------CCCcCChhhcCCcCEEECCCCcCCCCCHhHHHHHHHH
Confidence            777777655444322 356777777665               333344333 456666666664434432     5666


Q ss_pred             EEcCCCCCCCccccCCCCccCCCCCCcCeEeeecCC
Q 048322          403 VIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCP  438 (498)
Q Consensus       403 ~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~  438 (498)
                      +++++ +++.++.  .+|.....++++..|.+.+++
T Consensus       394 dLs~N-~L~~LP~--sl~~~~~~~~~l~~L~L~~Np  426 (754)
T PRK15370        394 QASRN-NLVRLPE--SLPHFRGEGPQPTRIIVEYNP  426 (754)
T ss_pred             hhccC-CcccCch--hHHHHhhcCCCccEEEeeCCC
Confidence            66553 3332200  012222234555666665543

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.29  E-value=1.1e-11  Score=131.17  Aligned_cols=233  Identities=22%  Similarity=0.244  Sum_probs=164.7

Q ss_pred             CCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCC-CCCccccceeeccccccceecCccccCCCCCCCCC
Q 048322          174 KCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPS-LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFP  252 (498)
Q Consensus       174 ~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~-i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~  252 (498)
                      .+...|++++++...+|..+.    ++|+.|++++| .++.+|. +.  ++|+.|++++| .++.+|..+        .+
T Consensus       178 ~~~~~L~L~~~~LtsLP~~Ip----~~L~~L~Ls~N-~LtsLP~~l~--~nL~~L~Ls~N-~LtsLP~~l--------~~  241 (754)
T PRK15370        178 NNKTELRLKILGLTTIPACIP----EQITTLILDNN-ELKSLPENLQ--GNIKTLYANSN-QLTSIPATL--------PD  241 (754)
T ss_pred             cCceEEEeCCCCcCcCCcccc----cCCcEEEecCC-CCCcCChhhc--cCCCEEECCCC-ccccCChhh--------hc
Confidence            567899999999999998664    57999999986 7888886 43  58999999985 588887532        45


Q ss_pred             CCceeeccCCCccccccccccCCccccCCCccceeeeccCCCccccCCCCc-chHHHH-HHhcccccccCCC--CccccE
Q 048322          253 SLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELL-PSLEIL-VSKCEKLVVSLSS--YPRLCR  328 (498)
Q Consensus       253 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l-~~L~~L-i~~~~~l~~~~~~--l~~L~~  328 (498)
                      +|+.|+++++ .+..++...        ..+|+.|++++| +++ .+|..+ ++|+.| +++| .+. .+|.  .++|+.
T Consensus       242 ~L~~L~Ls~N-~L~~LP~~l--------~s~L~~L~Ls~N-~L~-~LP~~l~~sL~~L~Ls~N-~Lt-~LP~~lp~sL~~  308 (754)
T PRK15370        242 TIQEMELSIN-RITELPERL--------PSALQSLDLFHN-KIS-CLPENLPEELRYLSVYDN-SIR-TLPAHLPSGITH  308 (754)
T ss_pred             cccEEECcCC-ccCcCChhH--------hCCCCEEECcCC-ccC-ccccccCCCCcEEECCCC-ccc-cCcccchhhHHH
Confidence            7999999887 444443211        357999999866 776 778654 467777 7665 343 3443  346888


Q ss_pred             EEecCCCcceecCCCCCCCccEEEEeccEeeeecCCCCccCCCCCCcCCCCC-CCCCeEEecCCCCCCC-----CCccEE
Q 048322          329 LEVDECKELVCRTPIDSKLIKFMTISNSSLDMIGCKGMLYDSQAGSSLPKPM-TTTNVLEFGKLLEPGF-----QILETL  402 (498)
Q Consensus       329 L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~l~~lp~~l-~~L~~L~i~~~~~~~l-----p~L~~L  402 (498)
                      |++++|....++.. .+++|+.|++++|               .+..+|..+ ++|+.|++++|.+..+     ++|+.|
T Consensus       309 L~Ls~N~Lt~LP~~-l~~sL~~L~Ls~N---------------~Lt~LP~~l~~sL~~L~Ls~N~L~~LP~~lp~~L~~L  372 (754)
T PRK15370        309 LNVQSNSLTALPET-LPPGLKTLEAGEN---------------ALTSLPASLPPELQVLDVSKNQITVLPETLPPTITTL  372 (754)
T ss_pred             HHhcCCccccCCcc-ccccceeccccCC---------------ccccCChhhcCcccEEECCCCCCCcCChhhcCCcCEE
Confidence            88888776554432 2468888888776               444566555 6899999999833322     359999


Q ss_pred             EEcCCCCCCCccccCCCCccCCCCCCcCeEeeecCCCCCcCCCC-----CccccccceeeccCc
Q 048322          403 VIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPNLTLFPEV-----GLPSSLLDLYVNNCP  461 (498)
Q Consensus       403 ~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~~l~~lp~~-----~~~~sL~~L~i~~c~  461 (498)
                      +|++| .++.+      |..+.  .+|+.|++++| ++..+|..     ...+++..|++.+.|
T Consensus       373 dLs~N-~Lt~L------P~~l~--~sL~~LdLs~N-~L~~LP~sl~~~~~~~~~l~~L~L~~Np  426 (754)
T PRK15370        373 DVSRN-ALTNL------PENLP--AALQIMQASRN-NLVRLPESLPHFRGEGPQPTRIIVEYNP  426 (754)
T ss_pred             ECCCC-cCCCC------CHhHH--HHHHHHhhccC-CcccCchhHHHHhhcCCCccEEEeeCCC
Confidence            99886 45443      66554  47899999885 77788763     122567889998887

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.23  E-value=7.3e-14  Score=130.66  Aligned_cols=256  Identities=21%  Similarity=0.238  Sum_probs=148.3

Q ss_pred             CCcccEEEEecCCCCCCcChhhHHHhhhcCCCCCCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCC-CC
Q 048322          141 LNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPS-LG  219 (498)
Q Consensus       141 ~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~-i~  219 (498)
                      ..++.|.++.+.          .+.+.+.+.++..+.+|.+..+....+|..++  .+..++.|+.+.+ ++..+|. ++
T Consensus        45 v~l~~lils~N~----------l~~l~~dl~nL~~l~vl~~~~n~l~~lp~aig--~l~~l~~l~vs~n-~ls~lp~~i~  111 (565)
T KOG0472|consen   45 VDLQKLILSHND----------LEVLREDLKNLACLTVLNVHDNKLSQLPAAIG--ELEALKSLNVSHN-KLSELPEQIG  111 (565)
T ss_pred             cchhhhhhccCc----------hhhccHhhhcccceeEEEeccchhhhCCHHHH--HHHHHHHhhcccc-hHhhccHHHh
Confidence            445555555443          23344455556777778888777777777777  4677777777773 5666776 77


Q ss_pred             CccccceeeccccccceecCccccCCCCCCCCCCCceeeccCCCccccccccccCCccccCCCccceeeeccCCCccccC
Q 048322          220 LLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKL  299 (498)
Q Consensus       220 ~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~l  299 (498)
                      .+++|++|+++. +.+.+++.+++.      +..|+.++..+. ++...+.+      ...+.+|..+.+.++ +++ .+
T Consensus       112 s~~~l~~l~~s~-n~~~el~~~i~~------~~~l~dl~~~~N-~i~slp~~------~~~~~~l~~l~~~~n-~l~-~l  175 (565)
T KOG0472|consen  112 SLISLVKLDCSS-NELKELPDSIGR------LLDLEDLDATNN-QISSLPED------MVNLSKLSKLDLEGN-KLK-AL  175 (565)
T ss_pred             hhhhhhhhhccc-cceeecCchHHH------Hhhhhhhhcccc-ccccCchH------HHHHHHHHHhhcccc-chh-hC
Confidence            788888887777 346666665544      555555554433 22222111      112556666666665 444 55


Q ss_pred             CCCcchHHHH--HHhcccccccCCC----CccccEEEecCCCcceecCCCCCCCccEEEEeccEeeeecCCCCccCCCCC
Q 048322          300 PELLPSLEIL--VSKCEKLVVSLSS----YPRLCRLEVDECKELVCRTPIDSKLIKFMTISNSSLDMIGCKGMLYDSQAG  373 (498)
Q Consensus       300 p~~l~~L~~L--i~~~~~l~~~~~~----l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~l  373 (498)
                      |...-+.+.|  +..|.++...+|.    +.+|+.|++..++...+|.....+.|+.|++..|.               +
T Consensus       176 ~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~---------------i  240 (565)
T KOG0472|consen  176 PENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQ---------------I  240 (565)
T ss_pred             CHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccH---------------H
Confidence            6555556667  5556665555554    66667777777777666666666667766666542               2


Q ss_pred             CcCCCCCCCCCeEEecCCCCCCCCCccEEEEcCCCCCCCccccCCCCccCCCCCCcCeEeeecCCCCCcCCCC-Cccccc
Q 048322          374 SSLPKPMTTTNVLEFGKLLEPGFQILETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPNLTLFPEV-GLPSSL  452 (498)
Q Consensus       374 ~~lp~~l~~L~~L~i~~~~~~~lp~L~~L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~~l~~lp~~-~~~~sL  452 (498)
                      +.+|..+            ...+++|..|+++. +++++.      |+++.-+.+|++|++++ +.+.++|.. |.. .|
T Consensus       241 ~~lpae~------------~~~L~~l~vLDLRd-Nklke~------Pde~clLrsL~rLDlSN-N~is~Lp~sLgnl-hL  299 (565)
T KOG0472|consen  241 EMLPAEH------------LKHLNSLLVLDLRD-NKLKEV------PDEICLLRSLERLDLSN-NDISSLPYSLGNL-HL  299 (565)
T ss_pred             HhhHHHH------------hcccccceeeeccc-cccccC------chHHHHhhhhhhhcccC-CccccCCcccccc-ee
Confidence            2232211            11234455555555 344433      66666666666666665 455666543 333 45


Q ss_pred             cceeeccCc
Q 048322          453 LDLYVNNCP  461 (498)
Q Consensus       453 ~~L~i~~c~  461 (498)
                      +.|.+.|.|
T Consensus       300 ~~L~leGNP  308 (565)
T KOG0472|consen  300 KFLALEGNP  308 (565)
T ss_pred             eehhhcCCc
Confidence            555555555

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.16  E-value=1.4e-12  Score=134.08  Aligned_cols=116  Identities=21%  Similarity=0.226  Sum_probs=64.6

Q ss_pred             CccccEEEecCCCcce--ecCCCCCCCccEEEEeccEeeeecCCCCccCCCCCCcCCC----CCCCCCeEEecCC-----
Q 048322          323 YPRLCRLEVDECKELV--CRTPIDSKLIKFMTISNSSLDMIGCKGMLYDSQAGSSLPK----PMTTTNVLEFGKL-----  391 (498)
Q Consensus       323 l~~L~~L~l~~~~~~~--~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~l~~lp~----~l~~L~~L~i~~~-----  391 (498)
                      ++.|+.|.+.+|....  ++-+..+..|+.|++++|               .|.++|.    .+..|+.|++++|     
T Consensus       358 ~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyN---------------rL~~fpas~~~kle~LeeL~LSGNkL~~L  422 (1081)
T KOG0618|consen  358 HAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYN---------------RLNSFPASKLRKLEELEELNLSGNKLTTL  422 (1081)
T ss_pred             hHHHHHHHHhcCcccccchhhhccccceeeeeeccc---------------ccccCCHHHHhchHHhHHHhcccchhhhh
Confidence            4455555555554332  333444566666666654               3333332    2245566666666     


Q ss_pred             --CCCCCCCccEEEEcCCCCCCCccccCCCCccCCCCCCcCeEeeecCCCCCcCCCC-Ccc-ccccceeeccCch
Q 048322          392 --LEPGFQILETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPNLTLFPEV-GLP-SSLLDLYVNNCPR  462 (498)
Q Consensus       392 --~~~~lp~L~~L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~~l~~lp~~-~~~-~sL~~L~i~~c~~  462 (498)
                        .+..++.|++|...+ +.|.      .+| .+..+++|+.++++ |+.|..+-.. ..| ++|++|++++.+.
T Consensus       423 p~tva~~~~L~tL~ahs-N~l~------~fP-e~~~l~qL~~lDlS-~N~L~~~~l~~~~p~p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  423 PDTVANLGRLHTLRAHS-NQLL------SFP-ELAQLPQLKVLDLS-CNNLSEVTLPEALPSPNLKYLDLSGNTR  488 (1081)
T ss_pred             hHHHHhhhhhHHHhhcC-Ccee------ech-hhhhcCcceEEecc-cchhhhhhhhhhCCCcccceeeccCCcc
Confidence              223445566666655 2332      247 66778888888886 4566544221 345 7888888888764

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.13  E-value=9.3e-11  Score=126.23  Aligned_cols=178  Identities=22%  Similarity=0.290  Sum_probs=112.4

Q ss_pred             cCCcccEEEEecCCCCCCcChhhHHHhhhcCCCCCCCceEEEeecC-CCCCCccccCCCCCCccEEeEeCCCCCCCCCC-
Q 048322          140 KLNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYG-GARFPLWIGDPLFSKIEFLELENCNNCVSLPS-  217 (498)
Q Consensus       140 ~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~-~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~-  217 (498)
                      ..+|++|.+.++..    ......   .+.+...+.|++|++++|. +.++|+.++  .|-+|++|++++ ..+..+|. 
T Consensus       544 ~~~L~tLll~~n~~----~l~~is---~~ff~~m~~LrVLDLs~~~~l~~LP~~I~--~Li~LryL~L~~-t~I~~LP~~  613 (889)
T KOG4658|consen  544 NPKLRTLLLQRNSD----WLLEIS---GEFFRSLPLLRVLDLSGNSSLSKLPSSIG--ELVHLRYLDLSD-TGISHLPSG  613 (889)
T ss_pred             CCccceEEEeecch----hhhhcC---HHHHhhCcceEEEECCCCCccCcCChHHh--hhhhhhcccccC-CCccccchH
Confidence            34689998887741    001111   1223445999999999654 788999998  699999999998 47889998 


Q ss_pred             CCCccccceeeccccccceecCccccCCCCCCCCCCCceeeccCCC-ccccccccccCCccccCCCccceeeeccCCCcc
Q 048322          218 LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFENLP-EWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLS  296 (498)
Q Consensus       218 i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~  296 (498)
                      +++|+.|.+|++..+..+..++.-.      ..+++|++|.+..-. .....     ....+..+.+|+.+.+..+....
T Consensus       614 l~~Lk~L~~Lnl~~~~~l~~~~~i~------~~L~~Lr~L~l~~s~~~~~~~-----~l~el~~Le~L~~ls~~~~s~~~  682 (889)
T KOG4658|consen  614 LGNLKKLIYLNLEVTGRLESIPGIL------LELQSLRVLRLPRSALSNDKL-----LLKELENLEHLENLSITISSVLL  682 (889)
T ss_pred             HHHHHhhheeccccccccccccchh------hhcccccEEEeeccccccchh-----hHHhhhcccchhhheeecchhHh
Confidence            9999999999999877666663322      248999999885432 11111     11122336666666665543310


Q ss_pred             ccCCCCcchHHHH---HH--hccc--ccccCCCCccccEEEecCCCcce
Q 048322          297 GKLPELLPSLEIL---VS--KCEK--LVVSLSSYPRLCRLEVDECKELV  338 (498)
Q Consensus       297 ~~lp~~l~~L~~L---i~--~~~~--l~~~~~~l~~L~~L~l~~~~~~~  338 (498)
                      ..-...+..|.++   +.  .|..  ....++.+.+|+.|.|.+|....
T Consensus       683 ~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e  731 (889)
T KOG4658|consen  683 LEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISE  731 (889)
T ss_pred             HhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCch
Confidence            0111234555555   22  2222  22245558999999999988754

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.12  E-value=1e-11  Score=127.76  Aligned_cols=46  Identities=28%  Similarity=0.407  Sum_probs=33.9

Q ss_pred             CCccCCCCCCcCeEeeecCCCCCcCCCCCccccccceeeccCchhHhh
Q 048322          419 LSMGFQRLTSLQSLKIWNCPNLTLFPEVGLPSSLLDLYVNNCPRLKKV  466 (498)
Q Consensus       419 l~~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~sL~~L~i~~c~~l~~~  466 (498)
                      +|+.+..+..|++|...+ +.+.++|+...++.|+.++++ |..|.+.
T Consensus       422 Lp~tva~~~~L~tL~ahs-N~l~~fPe~~~l~qL~~lDlS-~N~L~~~  467 (1081)
T KOG0618|consen  422 LPDTVANLGRLHTLRAHS-NQLLSFPELAQLPQLKVLDLS-CNNLSEV  467 (1081)
T ss_pred             hhHHHHhhhhhHHHhhcC-CceeechhhhhcCcceEEecc-cchhhhh
Confidence            377777777888887766 577788866667899999997 5555543

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=98.88  E-value=1.9e-10  Score=95.86  Aligned_cols=146  Identities=19%  Similarity=0.226  Sum_probs=84.3

Q ss_pred             CCCCCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCC-CCCccccceeeccccccceecCccccCCCCCC
Q 048322          171 QPHKCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPS-LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSM  249 (498)
Q Consensus       171 ~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~-i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~  249 (498)
                      ...+++..|.++.+....+|..+.  .+.+|+.|++.+ +.++.+|. +..++.|+.|.++ ++.+..+|..|..     
T Consensus        30 f~~s~ITrLtLSHNKl~~vppnia--~l~nlevln~~n-nqie~lp~~issl~klr~lnvg-mnrl~~lprgfgs-----  100 (264)
T KOG0617|consen   30 FNMSNITRLTLSHNKLTVVPPNIA--ELKNLEVLNLSN-NQIEELPTSISSLPKLRILNVG-MNRLNILPRGFGS-----  100 (264)
T ss_pred             cchhhhhhhhcccCceeecCCcHH--Hhhhhhhhhccc-chhhhcChhhhhchhhhheecc-hhhhhcCccccCC-----
Confidence            334556666666666666665555  366666666665 35666665 6666666666664 3444444443322     


Q ss_pred             CCCCCceeeccCCCccccccccccCCccccCCCccceeeeccCCCccccCCCCcchHHHH----HHhccc--ccccCCCC
Q 048322          250 PFPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPSLEIL----VSKCEK--LVVSLSSY  323 (498)
Q Consensus       250 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~L----i~~~~~--l~~~~~~l  323 (498)
                                                     ||-|+.|++..+.--...+|..|..++.|    +.+...  +...+..+
T Consensus       101 -------------------------------~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~l  149 (264)
T KOG0617|consen  101 -------------------------------FPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKL  149 (264)
T ss_pred             -------------------------------CchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhh
Confidence                                           55555555554422223577777666666    222211  22233348


Q ss_pred             ccccEEEecCCCcceecC-CCCCCCccEEEEecc
Q 048322          324 PRLCRLEVDECKELVCRT-PIDSKLIKFMTISNS  356 (498)
Q Consensus       324 ~~L~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~  356 (498)
                      ++|+.|.+.+++.+.++. ...+..|+.|+|.+|
T Consensus       150 t~lqil~lrdndll~lpkeig~lt~lrelhiqgn  183 (264)
T KOG0617|consen  150 TNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGN  183 (264)
T ss_pred             cceeEEeeccCchhhCcHHHHHHHHHHHHhcccc
Confidence            888888888888777653 334777777777776

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.78  E-value=3.1e-09  Score=114.61  Aligned_cols=170  Identities=16%  Similarity=0.176  Sum_probs=100.0

Q ss_pred             CCceEEEeecC--CCCCCccccCCCCCCccEEeEeCCCCCCCCCC-CCCccccceeeccccccceecCccccCCCCCCCC
Q 048322          175 CIKKVAIRNYG--GARFPLWIGDPLFSKIEFLELENCNNCVSLPS-LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPF  251 (498)
Q Consensus       175 ~L~~L~l~~~~--~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~-i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~  251 (498)
                      +|+.|-+.++.  ....+..+.. .++.|+.|+|++|.....+|. |+.|-+||+|++++ ..+..+|..+..      +
T Consensus       546 ~L~tLll~~n~~~l~~is~~ff~-~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~-t~I~~LP~~l~~------L  617 (889)
T KOG4658|consen  546 KLRTLLLQRNSDWLLEISGEFFR-SLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD-TGISHLPSGLGN------L  617 (889)
T ss_pred             ccceEEEeecchhhhhcCHHHHh-hCcceEEEECCCCCccCcCChHHhhhhhhhcccccC-CCccccchHHHH------H
Confidence            45555555543  2233332121 589999999999999999998 99999999999988 468888876544      8


Q ss_pred             CCCceeeccCCCccccccccccCCccccCCCccceeeeccCC-CccccCCC---CcchHHHH-HHhccc-ccccCCCCcc
Q 048322          252 PSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCP-KLSGKLPE---LLPSLEIL-VSKCEK-LVVSLSSYPR  325 (498)
Q Consensus       252 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~-~l~~~lp~---~l~~L~~L-i~~~~~-l~~~~~~l~~  325 (498)
                      .+|.+|++.....+... +++...     +++|++|.+..-. ......-.   .+.+|+.+ +..+.. +...+-.++.
T Consensus       618 k~L~~Lnl~~~~~l~~~-~~i~~~-----L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~  691 (889)
T KOG4658|consen  618 KKLIYLNLEVTGRLESI-PGILLE-----LQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTR  691 (889)
T ss_pred             Hhhheeccccccccccc-cchhhh-----cccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHH
Confidence            88888988876555444 333333     8899999986542 11111111   23334433 222211 0011111233


Q ss_pred             cc----EEEecCCCcce-ecCCCCCCCccEEEEeccEe
Q 048322          326 LC----RLEVDECKELV-CRTPIDSKLIKFMTISNSSL  358 (498)
Q Consensus       326 L~----~L~l~~~~~~~-~~~~~~~~~L~~L~l~~~~l  358 (498)
                      |.    .+.+.+|.... ......+.+|+.|.|.+|..
T Consensus       692 L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~  729 (889)
T KOG4658|consen  692 LRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGI  729 (889)
T ss_pred             HHHHhHhhhhcccccceeecccccccCcceEEEEcCCC
Confidence            32    33333333332 33445588999999988843

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.78  E-value=1.1e-10  Score=110.34  Aligned_cols=288  Identities=18%  Similarity=0.201  Sum_probs=166.9

Q ss_pred             CCCceEEEeecCCCCCCcc-ccCCCCCCccEEeEeCCCCCCCCC--CC-CCccccceeeccccccceecCccccCCCCCC
Q 048322          174 KCIKKVAIRNYGGARFPLW-IGDPLFSKIEFLELENCNNCVSLP--SL-GLLSSLKHLAVKGLKKLKSIESEVYGEGFSM  249 (498)
Q Consensus       174 ~~L~~L~l~~~~~~~~p~~-~~~~~l~~L~~L~l~~c~~~~~lp--~i-~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~  249 (498)
                      .-|+.|+++|+.....-+. .....++|+++|.+.+|..++.--  ++ ..+++|++|.+..|.+++...-....    .
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la----~  213 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLA----E  213 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHH----H
Confidence            4588888888875544221 112257888888888887665322  22 35778888888888776654332111    2


Q ss_pred             CCCCCceeeccCCCcccccc-ccccCCccccCCCccceeeeccCCCccc----cCCCCcchHHHH-HHhcccccccC---
Q 048322          250 PFPSLKILRFENLPEWWHWD-TDIKGNVHVDIFPRLQELSVVKCPKLSG----KLPELLPSLEIL-VSKCEKLVVSL---  320 (498)
Q Consensus       250 ~~~~L~~L~l~~~~~l~~~~-~~~~~~~~~~~l~~L~~L~l~~c~~l~~----~lp~~l~~L~~L-i~~~~~l~~~~---  320 (498)
                      .+++|++|++++|+.+.+-. ....     .....++.+...+|..+..    .+....+-+-++ +..|..+++.-   
T Consensus       214 gC~kL~~lNlSwc~qi~~~gv~~~~-----rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~  288 (483)
T KOG4341|consen  214 GCRKLKYLNLSWCPQISGNGVQALQ-----RGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWL  288 (483)
T ss_pred             hhhhHHHhhhccCchhhcCcchHHh-----ccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHH
Confidence            48888888888887765521 0000     0144566776777754420    001112223334 45565554311   


Q ss_pred             -C-CCccccEEEecCCCcceec----CCCCCCCccEEEEeccEeeeecCCCCccCCCCCCcCCCCCCCCCeEEecCC---
Q 048322          321 -S-SYPRLCRLEVDECKELVCR----TPIDSKLIKFMTISNSSLDMIGCKGMLYDSQAGSSLPKPMTTTNVLEFGKL---  391 (498)
Q Consensus       321 -~-~l~~L~~L~l~~~~~~~~~----~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~l~~lp~~l~~L~~L~i~~~---  391 (498)
                       . ....|+.|..++|....-.    -....++|+.|.+..|.....         ..++.+..+-+.|+.+++.+|   
T Consensus       289 i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd---------~~ft~l~rn~~~Le~l~~e~~~~~  359 (483)
T KOG4341|consen  289 IACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSD---------RGFTMLGRNCPHLERLDLEECGLI  359 (483)
T ss_pred             HhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhh---------hhhhhhhcCChhhhhhccccccee
Confidence             1 1566777777777664411    122357788877766521000         011222233367888888877   


Q ss_pred             -------CCCCCCCccEEEEcCCCCCCCccccCCCCccCCCCCCcCeEeeecCCCCCcCCCC--CccccccceeeccCch
Q 048322          392 -------LEPGFQILETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPNLTLFPEV--GLPSSLLDLYVNNCPR  462 (498)
Q Consensus       392 -------~~~~lp~L~~L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~~l~~lp~~--~~~~sL~~L~i~~c~~  462 (498)
                             ...++|.|+.|.+++|..++.- .+..+...-..+..|..+.+.+||.+..---.  ...++|+.+++.+|..
T Consensus       360 ~d~tL~sls~~C~~lr~lslshce~itD~-gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~  438 (483)
T KOG4341|consen  360 TDGTLASLSRNCPRLRVLSLSHCELITDE-GIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD  438 (483)
T ss_pred             hhhhHhhhccCCchhccCChhhhhhhhhh-hhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence                   2346788999999999887632 11122334456678999999999987653222  2236899999999977


Q ss_pred             hHh-hhccCCCCCCCCcCCCCeEEEC
Q 048322          463 LKK-VCKRDQGKEWPKIAHIPWVVID  487 (498)
Q Consensus       463 l~~-~~~~~~~~~~~~i~hi~~~~~~  487 (498)
                      ..+ ..+..       ..|.|.+.+.
T Consensus       439 vtk~~i~~~-------~~~lp~i~v~  457 (483)
T KOG4341|consen  439 VTKEAISRF-------ATHLPNIKVH  457 (483)
T ss_pred             hhhhhhHHH-------HhhCccceeh
Confidence            643 22211       3467776664

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=98.70  E-value=3e-10  Score=94.68  Aligned_cols=143  Identities=22%  Similarity=0.259  Sum_probs=105.6

Q ss_pred             hhcccCCcccEEEEecCCCCCCcChhhHHHhhhcCCCCCCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCC
Q 048322          136 ALCEKLNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSL  215 (498)
Q Consensus       136 ~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l  215 (498)
                      .+.++.+++.|.|+.+.          ...++..+..+.+|++|.++++...++|..++  ++++|+.|+++- +.+..+
T Consensus        28 gLf~~s~ITrLtLSHNK----------l~~vppnia~l~nlevln~~nnqie~lp~~is--sl~klr~lnvgm-nrl~~l   94 (264)
T KOG0617|consen   28 GLFNMSNITRLTLSHNK----------LTVVPPNIAELKNLEVLNLSNNQIEELPTSIS--SLPKLRILNVGM-NRLNIL   94 (264)
T ss_pred             cccchhhhhhhhcccCc----------eeecCCcHHHhhhhhhhhcccchhhhcChhhh--hchhhhheecch-hhhhcC
Confidence            35567788888887764          22244555566899999999999999999988  799999999986 467788


Q ss_pred             CC-CCCccccceeeccccc-cceecCccccCCCCCCCCCCCceeeccCCCccccccccccCCccccCCCccceeeeccCC
Q 048322          216 PS-LGLLSSLKHLAVKGLK-KLKSIESEVYGEGFSMPFPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCP  293 (498)
Q Consensus       216 p~-i~~l~~L~~L~l~~~~-~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~  293 (498)
                      |. +|.+|.|+.|+++.++ +-..+|..||.      ++.|+.|.+++. .++-++++ .+     .+.+|+.|.+.++.
T Consensus        95 prgfgs~p~levldltynnl~e~~lpgnff~------m~tlralyl~dn-dfe~lp~d-vg-----~lt~lqil~lrdnd  161 (264)
T KOG0617|consen   95 PRGFGSFPALEVLDLTYNNLNENSLPGNFFY------MTTLRALYLGDN-DFEILPPD-VG-----KLTNLQILSLRDND  161 (264)
T ss_pred             ccccCCCchhhhhhccccccccccCCcchhH------HHHHHHHHhcCC-CcccCChh-hh-----hhcceeEEeeccCc
Confidence            87 9999999999998753 23457888776      788888888775 33444332 22     38899999999884


Q ss_pred             CccccCCCCcchH
Q 048322          294 KLSGKLPELLPSL  306 (498)
Q Consensus       294 ~l~~~lp~~l~~L  306 (498)
                      -+  .+|..+..|
T Consensus       162 ll--~lpkeig~l  172 (264)
T KOG0617|consen  162 LL--SLPKEIGDL  172 (264)
T ss_pred             hh--hCcHHHHHH
Confidence            43  677644333

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.67  E-value=6.9e-08  Score=93.87  Aligned_cols=151  Identities=21%  Similarity=0.291  Sum_probs=80.4

Q ss_pred             CccceeeeccCCCccccCCCCcchHHHH-HHhcccccccCCC--CccccEEEecCCCcceecCCCCCCCccEEEEeccEe
Q 048322          282 PRLQELSVVKCPKLSGKLPELLPSLEIL-VSKCEKLVVSLSS--YPRLCRLEVDECKELVCRTPIDSKLIKFMTISNSSL  358 (498)
Q Consensus       282 ~~L~~L~l~~c~~l~~~lp~~l~~L~~L-i~~~~~l~~~~~~--l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l  358 (498)
                      .+++.|++++| .++ .+|...++|+.| +.+|..+. .+|.  .++|++|.+.+|..+.    ..+++|+.|++.+   
T Consensus        52 ~~l~~L~Is~c-~L~-sLP~LP~sLtsL~Lsnc~nLt-sLP~~LP~nLe~L~Ls~Cs~L~----sLP~sLe~L~L~~---  121 (426)
T PRK15386         52 RASGRLYIKDC-DIE-SLPVLPNELTEITIENCNNLT-TLPGSIPEGLEKLTVCHCPEIS----GLPESVRSLEIKG---  121 (426)
T ss_pred             cCCCEEEeCCC-CCc-ccCCCCCCCcEEEccCCCCcc-cCCchhhhhhhheEccCccccc----ccccccceEEeCC---
Confidence            44444444444 333 444333334444 44444443 2332  2456666666664332    1245666666643   


Q ss_pred             eeecCCCCccCCCCCCcCCCCCCCCCeEEecCC------C-CCCCCC-ccEEEEcCCCCCCCccccCCCCccCCCCCCcC
Q 048322          359 DMIGCKGMLYDSQAGSSLPKPMTTTNVLEFGKL------L-EPGFQI-LETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQ  430 (498)
Q Consensus       359 ~~~~~~~l~~~~~~l~~lp~~l~~L~~L~i~~~------~-~~~lp~-L~~L~l~~c~~L~~l~~l~~l~~~l~~l~~L~  430 (498)
                               ..|..+..+|.   +|+.|.+.++      . ...+|. |+.|.+.+|..+.       +|..+.  .+|+
T Consensus       122 ---------n~~~~L~~LPs---sLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~-------LP~~LP--~SLk  180 (426)
T PRK15386        122 ---------SATDSIKNVPN---GLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNII-------LPEKLP--ESLQ  180 (426)
T ss_pred             ---------CCCcccccCcc---hHhheeccccccccccccccccCCcccEEEecCCCccc-------Cccccc--ccCc
Confidence                     23444555653   4556665432      1 123554 8999998888653       144443  5888


Q ss_pred             eEeeecCCC-CCcCCCCCccccccceeeccCchhH
Q 048322          431 SLKIWNCPN-LTLFPEVGLPSSLLDLYVNNCPRLK  464 (498)
Q Consensus       431 ~L~l~~c~~-l~~lp~~~~~~sL~~L~i~~c~~l~  464 (498)
                      .|.++.+.. .-.++...+|+++ .|.+.+|-.+.
T Consensus       181 ~L~ls~n~~~sLeI~~~sLP~nl-~L~f~n~lkL~  214 (426)
T PRK15386        181 SITLHIEQKTTWNISFEGFPDGL-DIDLQNSVLLS  214 (426)
T ss_pred             EEEecccccccccCccccccccc-EechhhhcccC
Confidence            888876431 1133444566778 88888886554

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.38  E-value=5.9e-08  Score=91.51  Aligned_cols=69  Identities=16%  Similarity=0.200  Sum_probs=45.8

Q ss_pred             CCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCC--CCCccccceeeccccccceecCccccC
Q 048322          174 KCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPS--LGLLSSLKHLAVKGLKKLKSIESEVYG  244 (498)
Q Consensus       174 ~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~--i~~l~~L~~L~l~~~~~l~~i~~~~~~  244 (498)
                      +.-..+.+..|++..+|..... .+++|+.|+|+++ .+..+.+  |..+++|-.|.+-+.+.++++|...|+
T Consensus        67 ~~tveirLdqN~I~~iP~~aF~-~l~~LRrLdLS~N-~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~  137 (498)
T KOG4237|consen   67 PETVEIRLDQNQISSIPPGAFK-TLHRLRRLDLSKN-NISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFG  137 (498)
T ss_pred             CcceEEEeccCCcccCChhhcc-chhhhceeccccc-chhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhh
Confidence            4556677777777777765443 5777777777774 4555543  666777777777666677777776655

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.36  E-value=1.2e-08  Score=99.42  Aligned_cols=90  Identities=20%  Similarity=0.174  Sum_probs=48.2

Q ss_pred             hhcccCCcccEEEEecCCCCCCcChhhHHHhhhcCCCCCCCceEEEeecCCCCCCc-------cccCCCCCCccEEeEeC
Q 048322          136 ALCEKLNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPL-------WIGDPLFSKIEFLELEN  208 (498)
Q Consensus       136 ~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~-------~~~~~~l~~L~~L~l~~  208 (498)
                      .+....+|+.|.++++.-     .......+.+.+...+++++|.++++.....+.       .+.  .+++|+.|++++
T Consensus        18 ~~~~l~~L~~l~l~~~~l-----~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~--~~~~L~~L~l~~   90 (319)
T cd00116          18 LLPKLLCLQVLRLEGNTL-----GEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLT--KGCGLQELDLSD   90 (319)
T ss_pred             HHHHHhhccEEeecCCCC-----cHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHH--hcCceeEEEccC
Confidence            344556688888876641     112223445555566778888777765432221       222  356777777777


Q ss_pred             CCCCCCCCC-CCCcc---ccceeecccc
Q 048322          209 CNNCVSLPS-LGLLS---SLKHLAVKGL  232 (498)
Q Consensus       209 c~~~~~lp~-i~~l~---~L~~L~l~~~  232 (498)
                      |......+. +..+.   +|++|++++|
T Consensus        91 ~~~~~~~~~~~~~l~~~~~L~~L~ls~~  118 (319)
T cd00116          91 NALGPDGCGVLESLLRSSSLQELKLNNN  118 (319)
T ss_pred             CCCChhHHHHHHHHhccCcccEEEeeCC
Confidence            654333332 32332   3666666654

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.33  E-value=4.6e-08  Score=92.22  Aligned_cols=76  Identities=21%  Similarity=0.232  Sum_probs=50.4

Q ss_pred             CCCCCCeEEecCC--------CCCCCCCccEEEEcCCCCCCCccccCCCCccCCCCCCcCeEeeecCCCCCcCCCCCc--
Q 048322          379 PMTTTNVLEFGKL--------LEPGFQILETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPNLTLFPEVGL--  448 (498)
Q Consensus       379 ~l~~L~~L~i~~~--------~~~~lp~L~~L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~~l~~lp~~~~--  448 (498)
                      .+++|+.|++++|        .+.+...+++|.+.. +++..+.     ...+..++.|+.|++.+ ++++.+..+.+  
T Consensus       272 ~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~-N~l~~v~-----~~~f~~ls~L~tL~L~~-N~it~~~~~aF~~  344 (498)
T KOG4237|consen  272 KLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTR-NKLEFVS-----SGMFQGLSGLKTLSLYD-NQITTVAPGAFQT  344 (498)
T ss_pred             hcccceEeccCCCccchhhhhhhcchhhhhhhhcCc-chHHHHH-----HHhhhccccceeeeecC-CeeEEEecccccc
Confidence            3478888888888        345556688887766 3443221     33567899999999999 57776644322  


Q ss_pred             cccccceeeccCc
Q 048322          449 PSSLLDLYVNNCP  461 (498)
Q Consensus       449 ~~sL~~L~i~~c~  461 (498)
                      ..+|.+|.+-..|
T Consensus       345 ~~~l~~l~l~~Np  357 (498)
T KOG4237|consen  345 LFSLSTLNLLSNP  357 (498)
T ss_pred             cceeeeeehccCc
Confidence            3678888875443

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.33  E-value=3.3e-07  Score=89.25  Aligned_cols=39  Identities=18%  Similarity=0.141  Sum_probs=21.9

Q ss_pred             CCccEEEEcCCCCCCCccccCCCCccCCCCCCcCeEeeecC
Q 048322          397 QILETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNC  437 (498)
Q Consensus       397 p~L~~L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c  437 (498)
                      +.|++|++.+|. ++.. ....+...+..+++|++++++++
T Consensus       250 ~~L~~L~l~~n~-i~~~-~~~~l~~~~~~~~~L~~l~l~~N  288 (319)
T cd00116         250 ISLLTLSLSCND-ITDD-GAKDLAEVLAEKESLLELDLRGN  288 (319)
T ss_pred             CCceEEEccCCC-CCcH-HHHHHHHHHhcCCCccEEECCCC
Confidence            567777777763 3210 00111334455678888888875

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.27  E-value=4.4e-07  Score=78.76  Aligned_cols=110  Identities=22%  Similarity=0.289  Sum_probs=36.1

Q ss_pred             CCCCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCCCCCccccceeeccccccceecCccccCCCCCCCC
Q 048322          172 PHKCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPSLGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPF  251 (498)
Q Consensus       172 ~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~  251 (498)
                      ++.++++|++.|+....+. .++. .+.+|+.|++++| .++.++.+..+++|+.|++++ +.+++++..+..     .+
T Consensus        17 n~~~~~~L~L~~n~I~~Ie-~L~~-~l~~L~~L~Ls~N-~I~~l~~l~~L~~L~~L~L~~-N~I~~i~~~l~~-----~l   87 (175)
T PF14580_consen   17 NPVKLRELNLRGNQISTIE-NLGA-TLDKLEVLDLSNN-QITKLEGLPGLPRLKTLDLSN-NRISSISEGLDK-----NL   87 (175)
T ss_dssp             --------------------S--T-T-TT--EEE-TTS---S--TT----TT--EEE--S-S---S-CHHHHH-----H-
T ss_pred             ccccccccccccccccccc-chhh-hhcCCCEEECCCC-CCccccCccChhhhhhcccCC-CCCCccccchHH-----hC
Confidence            3456788888888776654 3442 4778888888885 677788888888888888887 457777543321     37


Q ss_pred             CCCceeeccCCCccccccccccCCccccCCCccceeeeccCCCc
Q 048322          252 PSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKL  295 (498)
Q Consensus       252 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l  295 (498)
                      |+|++|.+.++ .+..+.    .-..+..+++|+.|++.++|--
T Consensus        88 p~L~~L~L~~N-~I~~l~----~l~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   88 PNLQELYLSNN-KISDLN----ELEPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             TT--EEE-TTS----SCC----CCGGGGG-TT--EEE-TT-GGG
T ss_pred             CcCCEEECcCC-cCCChH----HhHHHHcCCCcceeeccCCccc
Confidence            88888888765 444443    1122334889999999988753

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.27  E-value=1.3e-08  Score=96.62  Aligned_cols=276  Identities=15%  Similarity=0.162  Sum_probs=169.0

Q ss_pred             CCcccEEEEecCCCCCCcChhhHHHhhhcCCCCCCCceEEEeecCCCCCCcccc-CCCCCCccEEeEeCCCCCCCCC--C
Q 048322          141 LNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPLWIG-DPLFSKIEFLELENCNNCVSLP--S  217 (498)
Q Consensus       141 ~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~-~~~l~~L~~L~l~~c~~~~~lp--~  217 (498)
                      ..|+.|.+.......       ...+-.....++++.+|.+.|+...+-.+... ...+++|++|++..|..++..-  .
T Consensus       138 g~lk~LSlrG~r~v~-------~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~  210 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVG-------DSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKY  210 (483)
T ss_pred             cccccccccccccCC-------cchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHH
Confidence            568888887654311       11111223457899999998887332222111 1157899999999998887543  2


Q ss_pred             -CCCccccceeeccccccceecCccccCCCCCCCCCCCceeeccCCCcccccc-ccccCCccccCCCccceeeeccCCCc
Q 048322          218 -LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFENLPEWWHWD-TDIKGNVHVDIFPRLQELSVVKCPKL  295 (498)
Q Consensus       218 -i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~~~~~~l~~L~~L~l~~c~~l  295 (498)
                       ...+++|++|.++.|+.+..=+-..+.    .....++.+...+|..++.-. --....     .+-+.++++..|..+
T Consensus       211 la~gC~kL~~lNlSwc~qi~~~gv~~~~----rG~~~l~~~~~kGC~e~~le~l~~~~~~-----~~~i~~lnl~~c~~l  281 (483)
T KOG4341|consen  211 LAEGCRKLKYLNLSWCPQISGNGVQALQ----RGCKELEKLSLKGCLELELEALLKAAAY-----CLEILKLNLQHCNQL  281 (483)
T ss_pred             HHHhhhhHHHhhhccCchhhcCcchHHh----ccchhhhhhhhcccccccHHHHHHHhcc-----ChHhhccchhhhccc
Confidence             346899999999999877662222221    225556666666765543211 011111     455677788888665


Q ss_pred             ccc----CCCCcchHHHH-HHhcccccc----cC-CCCccccEEEecCCCcceec---C-CCCCCCccEEEEeccEeeee
Q 048322          296 SGK----LPELLPSLEIL-VSKCEKLVV----SL-SSYPRLCRLEVDECKELVCR---T-PIDSKLIKFMTISNSSLDMI  361 (498)
Q Consensus       296 ~~~----lp~~l~~L~~L-i~~~~~l~~----~~-~~l~~L~~L~l~~~~~~~~~---~-~~~~~~L~~L~l~~~~l~~~  361 (498)
                      +..    +......|+.| ..+|.....    .+ ...++|+.|.+..|..+.-.   . ....+.|+.+++..|.....
T Consensus       282 TD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d  361 (483)
T KOG4341|consen  282 TDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITD  361 (483)
T ss_pred             cchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehh
Confidence            511    11234566777 777877543    12 23789999999999875521   1 12367888888877643332


Q ss_pred             cCCCCccCCCCCCcCCCCCCCCCeEEecCC-------------CCCCCCCccEEEEcCCCCCCCccccCCCCccCCCCCC
Q 048322          362 GCKGMLYDSQAGSSLPKPMTTTNVLEFGKL-------------LEPGFQILETLVIGNSEQLKPWRQGRGLSMGFQRLTS  428 (498)
Q Consensus       362 ~~~~l~~~~~~l~~lp~~l~~L~~L~i~~~-------------~~~~lp~L~~L~l~~c~~L~~l~~l~~l~~~l~~l~~  428 (498)
                      .         .+.++..+-+.|+.|.++.|             ...++..|..+.+.+|+.++.-     .-+.+...++
T Consensus       362 ~---------tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~-----~Le~l~~c~~  427 (483)
T KOG4341|consen  362 G---------TLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDA-----TLEHLSICRN  427 (483)
T ss_pred             h---------hHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHH-----HHHHHhhCcc
Confidence            2         12233333367888888877             1134455999999999988531     1234567789


Q ss_pred             cCeEeeecCCCCCcCCCC
Q 048322          429 LQSLKIWNCPNLTLFPEV  446 (498)
Q Consensus       429 L~~L~l~~c~~l~~lp~~  446 (498)
                      |+.+++.+|.....-+..
T Consensus       428 Leri~l~~~q~vtk~~i~  445 (483)
T KOG4341|consen  428 LERIELIDCQDVTKEAIS  445 (483)
T ss_pred             cceeeeechhhhhhhhhH
Confidence            999999999887665543

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.25  E-value=3.6e-06  Score=82.14  Aligned_cols=32  Identities=34%  Similarity=0.606  Sum_probs=24.9

Q ss_pred             CCcCeEeeecCCCCCcCCCCCccccccceeeccC
Q 048322          427 TSLQSLKIWNCPNLTLFPEVGLPSSLLDLYVNNC  460 (498)
Q Consensus       427 ~~L~~L~l~~c~~l~~lp~~~~~~sL~~L~i~~c  460 (498)
                      ++|++|.+.+|..+. +|. ++|.+|+.|+++.+
T Consensus       156 sSLk~L~Is~c~~i~-LP~-~LP~SLk~L~ls~n  187 (426)
T PRK15386        156 PSLKTLSLTGCSNII-LPE-KLPESLQSITLHIE  187 (426)
T ss_pred             CcccEEEecCCCccc-Ccc-cccccCcEEEeccc
Confidence            589999999987653 453 47889999998765

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.22  E-value=2.9e-07  Score=88.10  Aligned_cols=148  Identities=18%  Similarity=0.201  Sum_probs=75.8

Q ss_pred             CCCCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCC---C-CCCccccceeeccccccceecCccccCCCC
Q 048322          172 PHKCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLP---S-LGLLSSLKHLAVKGLKKLKSIESEVYGEGF  247 (498)
Q Consensus       172 ~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp---~-i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~  247 (498)
                      ++.+|+++.+.++.....+.--....+++++.|+|+.+- +...-   . ..+||+|+.|.++.+.......        
T Consensus       119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL-~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~--------  189 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNL-FHNWFPVLKIAEQLPSLENLNLSSNRLSNFIS--------  189 (505)
T ss_pred             hHHhhhheeecCccccccchhhhhhhCCcceeecchhhh-HHhHHHHHHHHHhcccchhcccccccccCCcc--------
Confidence            346777788877765444421011157778888887742 22221   1 3456677777666542111111        


Q ss_pred             CCCCCCCceeeccCCCccccccccccCCccccCCCccceeeeccCCCcc----ccCCCCcchHHHH-HHhccc-ccccCC
Q 048322          248 SMPFPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLS----GKLPELLPSLEIL-VSKCEK-LVVSLS  321 (498)
Q Consensus       248 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~----~~lp~~l~~L~~L-i~~~~~-l~~~~~  321 (498)
                                            +....     .+++|+.|.|+.| .++    +.+-..+|+|+.| +..... +....+
T Consensus       190 ----------------------s~~~~-----~l~~lK~L~l~~C-Gls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~  241 (505)
T KOG3207|consen  190 ----------------------SNTTL-----LLSHLKQLVLNSC-GLSWKDVQWILLTFPSLEVLYLEANEIILIKATS  241 (505)
T ss_pred             ----------------------ccchh-----hhhhhheEEeccC-CCCHHHHHHHHHhCCcHHHhhhhcccccceecch
Confidence                                  11111     1555555555555 221    1122234555555 444421 111222


Q ss_pred             C--CccccEEEecCCCcceecC---CCCCCCccEEEEecc
Q 048322          322 S--YPRLCRLEVDECKELVCRT---PIDSKLIKFMTISNS  356 (498)
Q Consensus       322 ~--l~~L~~L~l~~~~~~~~~~---~~~~~~L~~L~l~~~  356 (498)
                      .  +..|++|+++++....++.   ...++.|+.|.++.|
T Consensus       242 ~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~t  281 (505)
T KOG3207|consen  242 TKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSST  281 (505)
T ss_pred             hhhhhHHhhccccCCcccccccccccccccchhhhhcccc
Confidence            2  6778888888887776553   234777777777765

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.18  E-value=3.1e-07  Score=87.91  Aligned_cols=100  Identities=19%  Similarity=0.334  Sum_probs=55.6

Q ss_pred             CCCCCceeeccCCCcccccc--ccccCCccccCCCccceeeeccCCCccc----cCCCCcchHHHH-HHhcccccccC--
Q 048322          250 PFPSLKILRFENLPEWWHWD--TDIKGNVHVDIFPRLQELSVVKCPKLSG----KLPELLPSLEIL-VSKCEKLVVSL--  320 (498)
Q Consensus       250 ~~~~L~~L~l~~~~~l~~~~--~~~~~~~~~~~l~~L~~L~l~~c~~l~~----~lp~~l~~L~~L-i~~~~~l~~~~--  320 (498)
                      .|++++.|+++.. -+..|.  ..+...     +|+|+.|+|+.+ .+..    ..-..+++|+.| +..|.--...+  
T Consensus       144 ~~~~v~~LdLS~N-L~~nw~~v~~i~eq-----Lp~Le~LNls~N-rl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~  216 (505)
T KOG3207|consen  144 ILPNVRDLDLSRN-LFHNWFPVLKIAEQ-----LPSLENLNLSSN-RLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQW  216 (505)
T ss_pred             hCCcceeecchhh-hHHhHHHHHHHHHh-----cccchhcccccc-cccCCccccchhhhhhhheEEeccCCCCHHHHHH
Confidence            4666666666543 234443  122222     899999999876 2320    111245667777 77775432222  


Q ss_pred             --CCCccccEEEecCCCcceecC--CCCCCCccEEEEecc
Q 048322          321 --SSYPRLCRLEVDECKELVCRT--PIDSKLIKFMTISNS  356 (498)
Q Consensus       321 --~~l~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~  356 (498)
                        -.+|+|+.|.+..|.......  ...+..|+.|+|++|
T Consensus       217 ~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N  256 (505)
T KOG3207|consen  217 ILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNN  256 (505)
T ss_pred             HHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCC
Confidence              127777777777775333221  122667777777766

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=97.94  E-value=3.2e-06  Score=77.23  Aligned_cols=101  Identities=15%  Similarity=0.205  Sum_probs=70.8

Q ss_pred             CCccccEEEecCCCcceecCCCCCCCccEEEEeccEeeeecCCCCccCCCCCCcCCCCCCCCCeEEecCC------CCCC
Q 048322          322 SYPRLCRLEVDECKELVCRTPIDSKLIKFMTISNSSLDMIGCKGMLYDSQAGSSLPKPMTTTNVLEFGKL------LEPG  395 (498)
Q Consensus       322 ~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~l~~lp~~l~~L~~L~i~~~------~~~~  395 (498)
                      -+|.++.|+++.|....+.....+++|+.|++++|.+.-  |.          .+-..+.++++|.+++|      ..+.
T Consensus       305 L~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~--~~----------Gwh~KLGNIKtL~La~N~iE~LSGL~K  372 (490)
T KOG1259|consen  305 LAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAE--CV----------GWHLKLGNIKTLKLAQNKIETLSGLRK  372 (490)
T ss_pred             hccceeEEeccccceeeehhhhhcccceEeecccchhHh--hh----------hhHhhhcCEeeeehhhhhHhhhhhhHh
Confidence            368899999999998888888889999999999872211  11          11123377888999888      2334


Q ss_pred             CCCccEEEEcCCCCCCCccccCCCCccCCCCCCcCeEeeecCCC
Q 048322          396 FQILETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPN  439 (498)
Q Consensus       396 lp~L~~L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~~  439 (498)
                      +-+|..|++++ +++..+..    -.++++||.|+.|.+.++|.
T Consensus       373 LYSLvnLDl~~-N~Ie~lde----V~~IG~LPCLE~l~L~~NPl  411 (490)
T KOG1259|consen  373 LYSLVNLDLSS-NQIEELDE----VNHIGNLPCLETLRLTGNPL  411 (490)
T ss_pred             hhhheeccccc-cchhhHHH----hcccccccHHHHHhhcCCCc
Confidence            44588888877 33433211    34688999999999988664

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=97.76  E-value=9.1e-06  Score=70.62  Aligned_cols=134  Identities=16%  Similarity=0.189  Sum_probs=46.3

Q ss_pred             hhcccCCcccEEEEecCCCCCCcChhhHHHhhhcCC-CCCCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCC
Q 048322          136 ALCEKLNLHALTLEWGSQFDNSRDVAVEEHVLDILQ-PHKCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVS  214 (498)
Q Consensus       136 ~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~-~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~  214 (498)
                      .+.+..++++|+|..+.           ....+.+. .+.+|+.|++++|....++. +.  .+++|+.|++++| .++.
T Consensus        14 ~~~n~~~~~~L~L~~n~-----------I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~-l~--~L~~L~~L~L~~N-~I~~   78 (175)
T PF14580_consen   14 QYNNPVKLRELNLRGNQ-----------ISTIENLGATLDKLEVLDLSNNQITKLEG-LP--GLPRLKTLDLSNN-RISS   78 (175)
T ss_dssp             ---------------------------------S--TT-TT--EEE-TTS--S--TT-------TT--EEE--SS----S
T ss_pred             ccccccccccccccccc-----------cccccchhhhhcCCCEEECCCCCCccccC-cc--ChhhhhhcccCCC-CCCc
Confidence            44556678888887664           11234554 35789999999999887764 33  4889999999984 6777


Q ss_pred             CCC-C-CCccccceeeccccccceecCccccCCCCCCCCCCCceeeccCCCccccccccccCCccccCCCccceeeeccC
Q 048322          215 LPS-L-GLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKC  292 (498)
Q Consensus       215 lp~-i-~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c  292 (498)
                      ++. + ..+|+|++|+++++ .+..+..-    ..+..+++|+.|++.++|--..-.   ...--+..+|+|+.|+-...
T Consensus        79 i~~~l~~~lp~L~~L~L~~N-~I~~l~~l----~~L~~l~~L~~L~L~~NPv~~~~~---YR~~vi~~lP~Lk~LD~~~V  150 (175)
T PF14580_consen   79 ISEGLDKNLPNLQELYLSNN-KISDLNEL----EPLSSLPKLRVLSLEGNPVCEKKN---YRLFVIYKLPSLKVLDGQDV  150 (175)
T ss_dssp             -CHHHHHH-TT--EEE-TTS----SCCCC----GGGGG-TT--EEE-TT-GGGGSTT---HHHHHHHH-TT-SEETTEET
T ss_pred             cccchHHhCCcCCEEECcCC-cCCChHHh----HHHHcCCCcceeeccCCcccchhh---HHHHHHHHcChhheeCCEEc
Confidence            754 4 35899999999874 46554331    123468999999998775422110   00001123788888876554

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=97.70  E-value=4.1e-05  Score=54.22  Aligned_cols=40  Identities=28%  Similarity=0.482  Sum_probs=21.0

Q ss_pred             CccEEeEeCCCCCCCCCC--CCCccccceeeccccccceecCcc
Q 048322          200 KIEFLELENCNNCVSLPS--LGLLSSLKHLAVKGLKKLKSIESE  241 (498)
Q Consensus       200 ~L~~L~l~~c~~~~~lp~--i~~l~~L~~L~l~~~~~l~~i~~~  241 (498)
                      +|++|++++| .+..+|+  +..+++|++|++++ +.++.++..
T Consensus         2 ~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~-N~l~~i~~~   43 (61)
T PF13855_consen    2 NLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSN-NNLTSIPPD   43 (61)
T ss_dssp             TESEEEETSS-TESEECTTTTTTGTTESEEEETS-SSESEEETT
T ss_pred             cCcEEECCCC-CCCccCHHHHcCCCCCCEeEccC-CccCccCHH
Confidence            4555566554 4555553  55555556665554 234555443

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=97.59  E-value=0.00011  Score=52.03  Aligned_cols=60  Identities=23%  Similarity=0.356  Sum_probs=48.8

Q ss_pred             cccceeeccccccceecCccccCCCCCCCCCCCceeeccCCCccccccccccCCccccCCCccceeeeccCC
Q 048322          222 SSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCP  293 (498)
Q Consensus       222 ~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~  293 (498)
                      |+|++|++++| .+..++.+.+.     .+++|++|+++++ .++.+.++....     +++|++|++++|+
T Consensus         1 p~L~~L~l~~n-~l~~i~~~~f~-----~l~~L~~L~l~~N-~l~~i~~~~f~~-----l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSNN-KLTEIPPDSFS-----NLPNLETLDLSNN-NLTSIPPDAFSN-----LPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETSS-TESEECTTTTT-----TGTTESEEEETSS-SESEEETTTTTT-----STTESEEEETSSS
T ss_pred             CcCcEEECCCC-CCCccCHHHHc-----CCCCCCEeEccCC-ccCccCHHHHcC-----CCCCCEEeCcCCc
Confidence            58999999996 79999987765     5999999999966 666666544333     9999999999884

...

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=97.46  E-value=7e-05  Score=75.27  Aligned_cols=165  Identities=20%  Similarity=0.244  Sum_probs=91.5

Q ss_pred             CCCCceEEEeecCCCCCCccccCCCCC-CccEEeEeCCCCCCCCC-CCCCccccceeeccccccceecCccccCCCCCCC
Q 048322          173 HKCIKKVAIRNYGGARFPLWIGDPLFS-KIEFLELENCNNCVSLP-SLGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMP  250 (498)
Q Consensus       173 ~~~L~~L~l~~~~~~~~p~~~~~~~l~-~L~~L~l~~c~~~~~lp-~i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~  250 (498)
                      ...+..|.+.++....+|....  .+. +|+.|++++ +.+..+| +++.+++|+.|++..+ .+..++....      .
T Consensus       115 ~~~l~~L~l~~n~i~~i~~~~~--~~~~nL~~L~l~~-N~i~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~------~  184 (394)
T COG4886         115 LTNLTSLDLDNNNITDIPPLIG--LLKSNLKELDLSD-NKIESLPSPLRNLPNLKNLDLSFN-DLSDLPKLLS------N  184 (394)
T ss_pred             ccceeEEecCCcccccCccccc--cchhhcccccccc-cchhhhhhhhhccccccccccCCc-hhhhhhhhhh------h
Confidence            3667788888887777777766  343 788888877 4667775 4777888888888774 4666654322      2


Q ss_pred             CCCCceeeccCCCccccccccccCCccccCCCccceeeeccCCCccccCCCCcchHHHH-HHhcc--cc---cccCCCCc
Q 048322          251 FPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPSLEIL-VSKCE--KL---VVSLSSYP  324 (498)
Q Consensus       251 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~L-i~~~~--~l---~~~~~~l~  324 (498)
                      .+.|+.|.+++. .+..+.... +     ....|++|.+.++...  ..+..+..+..+ ...+.  .+   ...+..++
T Consensus       185 ~~~L~~L~ls~N-~i~~l~~~~-~-----~~~~L~~l~~~~N~~~--~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~  255 (394)
T COG4886         185 LSNLNNLDLSGN-KISDLPPEI-E-----LLSALEELDLSNNSII--ELLSSLSNLKNLSGLELSNNKLEDLPESIGNLS  255 (394)
T ss_pred             hhhhhheeccCC-ccccCchhh-h-----hhhhhhhhhhcCCcce--ecchhhhhcccccccccCCceeeeccchhcccc
Confidence            566666666654 333332110 0     0334677777665322  344334444444 11111  11   12233355


Q ss_pred             cccEEEecCCCcceecCCCCCCCccEEEEecc
Q 048322          325 RLCRLEVDECKELVCRTPIDSKLIKFMTISNS  356 (498)
Q Consensus       325 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~  356 (498)
                      +++.|+++++....++....+.+++.|+++++
T Consensus       256 ~l~~L~~s~n~i~~i~~~~~~~~l~~L~~s~n  287 (394)
T COG4886         256 NLETLDLSNNQISSISSLGSLTNLRELDLSGN  287 (394)
T ss_pred             ccceeccccccccccccccccCccCEEeccCc
Confidence            56666666655555444444555555555544

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.32  E-value=1.1e-05  Score=73.67  Aligned_cols=181  Identities=18%  Similarity=0.154  Sum_probs=94.5

Q ss_pred             CCcccEEEEecCCCCCCcChhhHHHhhhcCCCCCCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCC---
Q 048322          141 LNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPS---  217 (498)
Q Consensus       141 ~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~---  217 (498)
                      ..++.|+|+...-      .  .....--|.++++|+.|++.|+.... |-...-..=.+|+.|+|+.|+.+++...   
T Consensus       185 sRlq~lDLS~s~i------t--~stl~~iLs~C~kLk~lSlEg~~LdD-~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll  255 (419)
T KOG2120|consen  185 SRLQHLDLSNSVI------T--VSTLHGILSQCSKLKNLSLEGLRLDD-PIVNTIAKNSNLVRLNLSMCSGFTENALQLL  255 (419)
T ss_pred             hhhHHhhcchhhe------e--HHHHHHHHHHHHhhhhccccccccCc-HHHHHHhccccceeeccccccccchhHHHHH
Confidence            4577787765431      0  11122233556778888887765321 1111100235688888888777765542   


Q ss_pred             CCCccccceeeccccccceecCccccCCCCCCCCCCCceeeccCCCccccccccccCCccccCCCccceeeeccCCCccc
Q 048322          218 LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSG  297 (498)
Q Consensus       218 i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~  297 (498)
                      +..++.|..|+|+.|...++.-.-...    ..-++|+.|+++++...-+.. ..  ..-...+|+|.+|++++|..++.
T Consensus       256 ~~scs~L~~LNlsWc~l~~~~Vtv~V~----hise~l~~LNlsG~rrnl~~s-h~--~tL~~rcp~l~~LDLSD~v~l~~  328 (419)
T KOG2120|consen  256 LSSCSRLDELNLSWCFLFTEKVTVAVA----HISETLTQLNLSGYRRNLQKS-HL--STLVRRCPNLVHLDLSDSVMLKN  328 (419)
T ss_pred             HHhhhhHhhcCchHhhccchhhhHHHh----hhchhhhhhhhhhhHhhhhhh-HH--HHHHHhCCceeeeccccccccCc
Confidence            566777778877777544332111111    123466667776653211110 00  00012267777888877755541


Q ss_pred             cCC---CCcchHHHH-HHhcccccc----cCCCCccccEEEecCCCcc
Q 048322          298 KLP---ELLPSLEIL-VSKCEKLVV----SLSSYPRLCRLEVDECKEL  337 (498)
Q Consensus       298 ~lp---~~l~~L~~L-i~~~~~l~~----~~~~l~~L~~L~l~~~~~~  337 (498)
                      ..-   ..|+.|+.| ++.|..+..    .+.+.|+|.+|++.+|-..
T Consensus       329 ~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vsd  376 (419)
T KOG2120|consen  329 DCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVSD  376 (419)
T ss_pred             hHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccccCc
Confidence            110   124566666 777765431    2344778888888777443

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.32  E-value=7.2e-06  Score=74.92  Aligned_cols=190  Identities=14%  Similarity=0.108  Sum_probs=112.3

Q ss_pred             hhhcCCCC-CCCceEEEeecCCCC--CCccccCCCCCCccEEeEeCCCCCCCCCC-CCCccccceeeccccccceecCcc
Q 048322          166 VLDILQPH-KCIKKVAIRNYGGAR--FPLWIGDPLFSKIEFLELENCNNCVSLPS-LGLLSSLKHLAVKGLKKLKSIESE  241 (498)
Q Consensus       166 ~l~~l~~~-~~L~~L~l~~~~~~~--~p~~~~~~~l~~L~~L~l~~c~~~~~lp~-i~~l~~L~~L~l~~~~~l~~i~~~  241 (498)
                      +.+...++ +.|++|+++....+.  +...+.  ++.+|+.|.|.+...-..+-. +.+=.+|+.|+|+.|.++++-...
T Consensus       176 lae~~~~frsRlq~lDLS~s~it~stl~~iLs--~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~  253 (419)
T KOG2120|consen  176 LAEHFSPFRSRLQHLDLSNSVITVSTLHGILS--QCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQ  253 (419)
T ss_pred             hhhhhhhhhhhhHHhhcchhheeHHHHHHHHH--HHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHH
Confidence            33333444 569999999765431  111122  577888888887532222222 677789999999999888765433


Q ss_pred             ccCCCCCCCCCCCceeeccCCCccccccc-cccCCccccCCCccceeeeccCCCccccCCCCcchHHHHHHhcccccccC
Q 048322          242 VYGEGFSMPFPSLKILRFENLPEWWHWDT-DIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSL  320 (498)
Q Consensus       242 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~  320 (498)
                      ..    +..+..|..|++++|.-...... .+..     .-++|+.|+|+||..--   -  -..+..|...|       
T Consensus       254 ll----~~scs~L~~LNlsWc~l~~~~Vtv~V~h-----ise~l~~LNlsG~rrnl---~--~sh~~tL~~rc-------  312 (419)
T KOG2120|consen  254 LL----LSSCSRLDELNLSWCFLFTEKVTVAVAH-----ISETLTQLNLSGYRRNL---Q--KSHLSTLVRRC-------  312 (419)
T ss_pred             HH----HHhhhhHhhcCchHhhccchhhhHHHhh-----hchhhhhhhhhhhHhhh---h--hhHHHHHHHhC-------
Confidence            22    13588899999998855444331 1111     14689999999985421   1  12344444444       


Q ss_pred             CCCccccEEEecCCCcce---ecCCCCCCCccEEEEeccEeeeecCCCCccCCCCCCcCCCCCCCCCeEEecCC
Q 048322          321 SSYPRLCRLEVDECKELV---CRTPIDSKLIKFMTISNSSLDMIGCKGMLYDSQAGSSLPKPMTTTNVLEFGKL  391 (498)
Q Consensus       321 ~~l~~L~~L~l~~~~~~~---~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~l~~lp~~l~~L~~L~i~~~  391 (498)
                         |+|.+|++++|..+.   +.....++.|++|.++.|..-+.         +.+-.+ .+.|+|.+|++.+|
T Consensus       313 ---p~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p---------~~~~~l-~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  313 ---PNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIP---------ETLLEL-NSKPSLVYLDVFGC  373 (419)
T ss_pred             ---CceeeeccccccccCchHHHHHHhcchheeeehhhhcCCCh---------HHeeee-ccCcceEEEEeccc
Confidence               455677887776655   22334477788888766511110         000011 34578888888887

>PLN03150 hypothetical protein; Provisional

Probab=97.27  E-value=0.00023  Score=75.52  Aligned_cols=109  Identities=18%  Similarity=0.165  Sum_probs=76.7

Q ss_pred             CCceEEEeecCCC-CCCccccCCCCCCccEEeEeCCCCCCCCCC-CCCccccceeeccccccceecCccccCCCCCCCCC
Q 048322          175 CIKKVAIRNYGGA-RFPLWIGDPLFSKIEFLELENCNNCVSLPS-LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFP  252 (498)
Q Consensus       175 ~L~~L~l~~~~~~-~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~-i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~  252 (498)
                      .+..|++.+++.. .+|..+.  .+++|+.|+|++|...+.+|. ++.+++|+.|+++++.-...+|..+.      .++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~--~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~------~L~  490 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDIS--KLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLG------QLT  490 (623)
T ss_pred             EEEEEECCCCCccccCCHHHh--CCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHh------cCC
Confidence            3677888887753 5677777  589999999999876678886 89999999999998754445665443      488


Q ss_pred             CCceeeccCCCccccccccccCCccccCCCccceeeeccCCCcc
Q 048322          253 SLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLS  296 (498)
Q Consensus       253 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~  296 (498)
                      +|+.|+++++ .+.+..+...+.    .+.++..+++.+++.+.
T Consensus       491 ~L~~L~Ls~N-~l~g~iP~~l~~----~~~~~~~l~~~~N~~lc  529 (623)
T PLN03150        491 SLRILNLNGN-SLSGRVPAALGG----RLLHRASFNFTDNAGLC  529 (623)
T ss_pred             CCCEEECcCC-cccccCChHHhh----ccccCceEEecCCcccc
Confidence            9999999877 344333221111    13566778888776654

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=97.26  E-value=0.00023  Score=71.52  Aligned_cols=124  Identities=25%  Similarity=0.313  Sum_probs=71.3

Q ss_pred             CCccceeeeccCCCccccCCCCcchHHHHHHhcccccccCCCCccccEEEecCCCcceecCCC-CCCCccEEEEeccE-e
Q 048322          281 FPRLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSYPRLCRLEVDECKELVCRTPI-DSKLIKFMTISNSS-L  358 (498)
Q Consensus       281 l~~L~~L~l~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~-l  358 (498)
                      +++|+.|++++| .+. .+|.                 .....+.|+.|+++++....++... .+..|++|.++++. +
T Consensus       162 l~~L~~L~l~~N-~l~-~l~~-----------------~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~  222 (394)
T COG4886         162 LPNLKNLDLSFN-DLS-DLPK-----------------LLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSII  222 (394)
T ss_pred             cccccccccCCc-hhh-hhhh-----------------hhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcce
Confidence            788888888887 343 4443                 1224678888888888877766653 35558888887762 1


Q ss_pred             eeecCCCCccCCCCCCcCCCCCCCCCeEEecCC-------CCCCCCCccEEEEcCCCCCCCccccCCCCccCCCCCCcCe
Q 048322          359 DMIGCKGMLYDSQAGSSLPKPMTTTNVLEFGKL-------LEPGFQILETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQS  431 (498)
Q Consensus       359 ~~~~~~~l~~~~~~l~~lp~~l~~L~~L~i~~~-------~~~~lp~L~~L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~  431 (498)
                      ....+            + ..+.++..|.+.++       .++.+++|+.|+++++ .++.+      +. +..+.+|+.
T Consensus       223 ~~~~~------------~-~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n-~i~~i------~~-~~~~~~l~~  281 (394)
T COG4886         223 ELLSS------------L-SNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNN-QISSI------SS-LGSLTNLRE  281 (394)
T ss_pred             ecchh------------h-hhcccccccccCCceeeeccchhccccccceeccccc-ccccc------cc-ccccCccCE
Confidence            11100            0 11133444444444       3445566777777663 33332      33 667777777


Q ss_pred             EeeecCCCCCcCC
Q 048322          432 LKIWNCPNLTLFP  444 (498)
Q Consensus       432 L~l~~c~~l~~lp  444 (498)
                      |++++.......|
T Consensus       282 L~~s~n~~~~~~~  294 (394)
T COG4886         282 LDLSGNSLSNALP  294 (394)
T ss_pred             EeccCccccccch
Confidence            7777744433333

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.24  E-value=0.0001  Score=69.12  Aligned_cols=93  Identities=15%  Similarity=0.154  Sum_probs=48.5

Q ss_pred             HhhcccCCcccEEEEecCCCCCCcChhhHHHhhhcCCCCCCCceEEEeecCCC----CCCcccc---C--CCCCCccEEe
Q 048322          135 AALCEKLNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGA----RFPLWIG---D--PLFSKIEFLE  205 (498)
Q Consensus       135 ~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~----~~p~~~~---~--~~l~~L~~L~  205 (498)
                      ..+..+..+++++|+.+.-     ...-...+-+.|...++|++.+++..-..    ++|..+.   .  ...++|++|+
T Consensus        24 ~~~~~~~s~~~l~lsgnt~-----G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ld   98 (382)
T KOG1909|consen   24 EELEPMDSLTKLDLSGNTF-----GTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLD   98 (382)
T ss_pred             HHhcccCceEEEeccCCch-----hHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEee
Confidence            3455667777777766642     11112223344555567777777654322    2333221   0  0245777788


Q ss_pred             EeCCCCCC-CCCC----CCCccccceeecccc
Q 048322          206 LENCNNCV-SLPS----LGLLSSLKHLAVKGL  232 (498)
Q Consensus       206 l~~c~~~~-~lp~----i~~l~~L~~L~l~~~  232 (498)
                      ||+|-.=. .++.    +..+..|++|++.+|
T Consensus        99 LSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~  130 (382)
T KOG1909|consen   99 LSDNAFGPKGIRGLEELLSSCTDLEELYLNNC  130 (382)
T ss_pred             ccccccCccchHHHHHHHHhccCHHHHhhhcC
Confidence            77753211 2221    344667777777775

>PLN03150 hypothetical protein; Provisional

Probab=97.17  E-value=0.00062  Score=72.25  Aligned_cols=93  Identities=22%  Similarity=0.251  Sum_probs=70.6

Q ss_pred             CccEEeEeCCCCCCCCCC-CCCccccceeeccccccceecCccccCCCCCCCCCCCceeeccCCCccccccccccCCccc
Q 048322          200 KIEFLELENCNNCVSLPS-LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFENLPEWWHWDTDIKGNVHV  278 (498)
Q Consensus       200 ~L~~L~l~~c~~~~~lp~-i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~  278 (498)
                      .++.|+|+++.....+|. ++.+++|+.|+++++.-...+|..+.      .+++|+.|+++++ .+.+..+...+.   
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~------~l~~L~~LdLs~N-~lsg~iP~~l~~---  488 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLG------SITSLEVLDLSYN-SFNGSIPESLGQ---  488 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHh------CCCCCCEEECCCC-CCCCCCchHHhc---
Confidence            378899999876667887 99999999999999754446665543      4899999999987 555444333333   


Q ss_pred             cCCCccceeeeccCCCccccCCCCcch
Q 048322          279 DIFPRLQELSVVKCPKLSGKLPELLPS  305 (498)
Q Consensus       279 ~~l~~L~~L~l~~c~~l~~~lp~~l~~  305 (498)
                        +++|+.|++++| .+.|.+|..+..
T Consensus       489 --L~~L~~L~Ls~N-~l~g~iP~~l~~  512 (623)
T PLN03150        489 --LTSLRILNLNGN-SLSGRVPAALGG  512 (623)
T ss_pred             --CCCCCEEECcCC-cccccCChHHhh
Confidence              899999999988 566788876544

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=97.16  E-value=5.4e-05  Score=75.28  Aligned_cols=162  Identities=20%  Similarity=0.203  Sum_probs=107.1

Q ss_pred             CCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCC-CCCccccceeeccccccceecCccccCCCCCCCCC
Q 048322          174 KCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPS-LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFP  252 (498)
Q Consensus       174 ~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~-i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~  252 (498)
                      ..-...+++.+...++|..+.  .|..|+.+.+..+ .+..+|. ++++..|.+|+|+. +.+..+|..++       +-
T Consensus        75 tdt~~aDlsrNR~~elp~~~~--~f~~Le~liLy~n-~~r~ip~~i~~L~~lt~l~ls~-NqlS~lp~~lC-------~l  143 (722)
T KOG0532|consen   75 TDTVFADLSRNRFSELPEEAC--AFVSLESLILYHN-CIRTIPEAICNLEALTFLDLSS-NQLSHLPDGLC-------DL  143 (722)
T ss_pred             cchhhhhccccccccCchHHH--HHHHHHHHHHHhc-cceecchhhhhhhHHHHhhhcc-chhhcCChhhh-------cC
Confidence            344566777788888888776  5777888888763 4566675 88899999999987 45777777665       33


Q ss_pred             CCceeeccCCCccccccccccCCccccCCCccceeeeccCCCccccCCCCcchHHHH--HHh-cccccccCCC---Cccc
Q 048322          253 SLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPSLEIL--VSK-CEKLVVSLSS---YPRL  326 (498)
Q Consensus       253 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~L--i~~-~~~l~~~~~~---l~~L  326 (498)
                      -|+.|-+++. +++....++. .     .+.|..|+.+.| ++. .+|..+..|++|  +.- -+++. .+|.   --.|
T Consensus       144 pLkvli~sNN-kl~~lp~~ig-~-----~~tl~~ld~s~n-ei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~LpL  213 (722)
T KOG0532|consen  144 PLKVLIVSNN-KLTSLPEEIG-L-----LPTLAHLDVSKN-EIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLPL  213 (722)
T ss_pred             cceeEEEecC-ccccCCcccc-c-----chhHHHhhhhhh-hhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCce
Confidence            4777777765 4454443332 2     788889999877 554 788777666666  221 22233 3333   2346


Q ss_pred             cEEEecCCCcceecCCC-CCCCccEEEEecc
Q 048322          327 CRLEVDECKELVCRTPI-DSKLIKFMTISNS  356 (498)
Q Consensus       327 ~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~  356 (498)
                      .+|+++.|....++-.+ .+..|++|.+.+|
T Consensus       214 i~lDfScNkis~iPv~fr~m~~Lq~l~LenN  244 (722)
T KOG0532|consen  214 IRLDFSCNKISYLPVDFRKMRHLQVLQLENN  244 (722)
T ss_pred             eeeecccCceeecchhhhhhhhheeeeeccC
Confidence            77888877766665433 3777888888776

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=97.15  E-value=6.1e-05  Score=69.04  Aligned_cols=55  Identities=16%  Similarity=0.172  Sum_probs=25.6

Q ss_pred             CCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCCCCCccccceeeccc
Q 048322          174 KCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPSLGLLSSLKHLAVKG  231 (498)
Q Consensus       174 ~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~i~~l~~L~~L~l~~  231 (498)
                      ..|..|++++|.+..+-.++.  ..|.++.|+++++ .+..+..+..+++|++|++++
T Consensus       284 q~LtelDLS~N~I~~iDESvK--L~Pkir~L~lS~N-~i~~v~nLa~L~~L~~LDLS~  338 (490)
T KOG1259|consen  284 QELTELDLSGNLITQIDESVK--LAPKLRRLILSQN-RIRTVQNLAELPQLQLLDLSG  338 (490)
T ss_pred             hhhhhccccccchhhhhhhhh--hccceeEEecccc-ceeeehhhhhcccceEeeccc
Confidence            344455555554444444433  3455555555542 333333344455555555544

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=96.94  E-value=9.7e-05  Score=73.50  Aligned_cols=147  Identities=21%  Similarity=0.249  Sum_probs=94.1

Q ss_pred             hhhcCCCCCCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCC-CCCccccceeeccccccceecCccccC
Q 048322          166 VLDILQPHKCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPS-LGLLSSLKHLAVKGLKKLKSIESEVYG  244 (498)
Q Consensus       166 ~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~-i~~l~~L~~L~l~~~~~l~~i~~~~~~  244 (498)
                      +++.+..+..|.+|+++.+....+|..++   .--|+.|-+++ ++++.+|. +|.++.|..|+.+.| .+..+|....+
T Consensus       113 ip~~i~~L~~lt~l~ls~NqlS~lp~~lC---~lpLkvli~sN-Nkl~~lp~~ig~~~tl~~ld~s~n-ei~slpsql~~  187 (722)
T KOG0532|consen  113 IPEAICNLEALTFLDLSSNQLSHLPDGLC---DLPLKVLIVSN-NKLTSLPEEIGLLPTLAHLDVSKN-EIQSLPSQLGY  187 (722)
T ss_pred             cchhhhhhhHHHHhhhccchhhcCChhhh---cCcceeEEEec-CccccCCcccccchhHHHhhhhhh-hhhhchHHhhh
Confidence            34555566778888888888888888777   23377888887 47888887 888888888888875 47777776655


Q ss_pred             CCCCCCCCCCceeeccCCCccccccccccCCccccCCCccceeeeccCCCccccCCCCcchHHHH---HHhcccccccCC
Q 048322          245 EGFSMPFPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPSLEIL---VSKCEKLVVSLS  321 (498)
Q Consensus       245 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~L---i~~~~~l~~~~~  321 (498)
                            +.+|+.|.+... .+..+..+..       --.|.+|+++ |.++. .+|-.|.+++.|   ..+|+-+. +-|
T Consensus       188 ------l~slr~l~vrRn-~l~~lp~El~-------~LpLi~lDfS-cNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPP  250 (722)
T KOG0532|consen  188 ------LTSLRDLNVRRN-HLEDLPEELC-------SLPLIRLDFS-CNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPP  250 (722)
T ss_pred             ------HHHHHHHHHhhh-hhhhCCHHHh-------CCceeeeecc-cCcee-ecchhhhhhhhheeeeeccCCCC-CCh
Confidence                  677777776544 3333332211       1246777776 44665 788777766666   34444443 222


Q ss_pred             C-------CccccEEEecCC
Q 048322          322 S-------YPRLCRLEVDEC  334 (498)
Q Consensus       322 ~-------l~~L~~L~l~~~  334 (498)
                      .       ..-.++|++..|
T Consensus       251 AqIC~kGkVHIFKyL~~qA~  270 (722)
T KOG0532|consen  251 AQICEKGKVHIFKYLSTQAC  270 (722)
T ss_pred             HHHHhccceeeeeeecchhc
Confidence            1       233456666555

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=96.90  E-value=0.00061  Score=44.34  Aligned_cols=32  Identities=31%  Similarity=0.448  Sum_probs=15.6

Q ss_pred             CccEEeEeCCCCCCCCCC-CCCccccceeecccc
Q 048322          200 KIEFLELENCNNCVSLPS-LGLLSSLKHLAVKGL  232 (498)
Q Consensus       200 ~L~~L~l~~c~~~~~lp~-i~~l~~L~~L~l~~~  232 (498)
                      +|++|++++| .++.+|+ +++|++|+.|+++++
T Consensus         2 ~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N   34 (44)
T PF12799_consen    2 NLEELDLSNN-QITDLPPELSNLPNLETLNLSNN   34 (44)
T ss_dssp             T-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSS
T ss_pred             cceEEEccCC-CCcccCchHhCCCCCCEEEecCC
Confidence            4555555553 4445555 555555555555553

...

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=96.76  E-value=6.4e-05  Score=76.79  Aligned_cols=55  Identities=29%  Similarity=0.327  Sum_probs=30.2

Q ss_pred             ccEEEEcCCCCCCCccccCCCCccCCCCCCcCeEeeecCCCCCcCCCC---CccccccceeeccCch
Q 048322          399 LETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPNLTLFPEV---GLPSSLLDLYVNNCPR  462 (498)
Q Consensus       399 L~~L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~~l~~lp~~---~~~~sL~~L~i~~c~~  462 (498)
                      |+.|.+++ +.++.+       .++.+|.+|+.|+++++ -|....+-   ..+.+|++|++.|+|-
T Consensus       234 L~~L~lrn-N~l~tL-------~gie~LksL~~LDlsyN-ll~~hseL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  234 LQLLNLRN-NALTTL-------RGIENLKSLYGLDLSYN-LLSEHSELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             heeeeecc-cHHHhh-------hhHHhhhhhhccchhHh-hhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence            66666666 334332       34566777777777662 33322221   2236677777777663

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=96.67  E-value=0.00083  Score=71.37  Aligned_cols=73  Identities=22%  Similarity=0.364  Sum_probs=36.1

Q ss_pred             CCccceeeeccCCCccccCC--CCcchHHHH-HHhc-----ccccccCCCCccccEEEecCCCccee--------cCCCC
Q 048322          281 FPRLQELSVVKCPKLSGKLP--ELLPSLEIL-VSKC-----EKLVVSLSSYPRLCRLEVDECKELVC--------RTPID  344 (498)
Q Consensus       281 l~~L~~L~l~~c~~l~~~lp--~~l~~L~~L-i~~~-----~~l~~~~~~l~~L~~L~l~~~~~~~~--------~~~~~  344 (498)
                      ||+|..|+|+++ +++ .+.  +.+.+|+.| +.+-     ..+. .+-.+++|+.|||+.......        .....
T Consensus       172 FpNL~sLDIS~T-nI~-nl~GIS~LknLq~L~mrnLe~e~~~~l~-~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~  248 (699)
T KOG3665|consen  172 FPNLRSLDISGT-NIS-NLSGISRLKNLQVLSMRNLEFESYQDLI-DLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMV  248 (699)
T ss_pred             cCccceeecCCC-Ccc-CcHHHhccccHHHHhccCCCCCchhhHH-HHhcccCCCeeeccccccccchHHHHHHHHhccc
Confidence            677777777766 332 221  123333333 2221     1111 233477788888876554431        12223


Q ss_pred             CCCccEEEEecc
Q 048322          345 SKLIKFMTISNS  356 (498)
Q Consensus       345 ~~~L~~L~l~~~  356 (498)
                      +|.|+.|+.++.
T Consensus       249 LpeLrfLDcSgT  260 (699)
T KOG3665|consen  249 LPELRFLDCSGT  260 (699)
T ss_pred             CccccEEecCCc
Confidence            666666666654

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=96.65  E-value=0.00057  Score=69.05  Aligned_cols=188  Identities=19%  Similarity=0.169  Sum_probs=112.4

Q ss_pred             ccCCcccEEEEecCCCCCCcChhhHHHhhhcCCCCCCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCCC
Q 048322          139 EKLNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPSL  218 (498)
Q Consensus       139 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~i  218 (498)
                      ....+..+.+.++.          ...+...+..+.+|..|++.++....+...+.  .+++|++|++++ +.++.+.++
T Consensus        70 ~l~~l~~l~l~~n~----------i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~--~~~~L~~L~ls~-N~I~~i~~l  136 (414)
T KOG0531|consen   70 SLTSLKELNLRQNL----------IAKILNHLSKLKSLEALDLYDNKIEKIENLLS--SLVNLQVLDLSF-NKITKLEGL  136 (414)
T ss_pred             HhHhHHhhccchhh----------hhhhhcccccccceeeeeccccchhhcccchh--hhhcchheeccc-cccccccch
Confidence            34455555555553          22244556777889999999888777665444  588999999998 478888888


Q ss_pred             CCccccceeeccccccceecCccccCCCCCCCCCCCceeeccCCCccccccccccCCccccCCCccceeeeccCCCcccc
Q 048322          219 GLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGK  298 (498)
Q Consensus       219 ~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~  298 (498)
                      ..++.|+.|++.++ .+..+...       ..++.|+.+++.++. +..+...    . ...+.+|+.+.+.++...   
T Consensus       137 ~~l~~L~~L~l~~N-~i~~~~~~-------~~l~~L~~l~l~~n~-i~~ie~~----~-~~~~~~l~~l~l~~n~i~---  199 (414)
T KOG0531|consen  137 STLTLLKELNLSGN-LISDISGL-------ESLKSLKLLDLSYNR-IVDIEND----E-LSELISLEELDLGGNSIR---  199 (414)
T ss_pred             hhccchhhheeccC-cchhccCC-------ccchhhhcccCCcch-hhhhhhh----h-hhhccchHHHhccCCchh---
Confidence            88888999999885 45555431       236677777776652 2222210    0 122778888888876332   


Q ss_pred             CCCCcchHHHH-HHh--ccccc--ccCCCCcc--ccEEEecCCCccee-cCCCCCCCccEEEEecc
Q 048322          299 LPELLPSLEIL-VSK--CEKLV--VSLSSYPR--LCRLEVDECKELVC-RTPIDSKLIKFMTISNS  356 (498)
Q Consensus       299 lp~~l~~L~~L-i~~--~~~l~--~~~~~l~~--L~~L~l~~~~~~~~-~~~~~~~~L~~L~l~~~  356 (498)
                      ....+..+..+ ..+  -+.+.  ..++.+..  |+.+++.++..... .....+..+..|++.++
T Consensus       200 ~i~~~~~~~~l~~~~l~~n~i~~~~~l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n  265 (414)
T KOG0531|consen  200 EIEGLDLLKKLVLLSLLDNKISKLEGLNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSN  265 (414)
T ss_pred             cccchHHHHHHHHhhcccccceeccCcccchhHHHHHHhcccCccccccccccccccccccchhhc
Confidence            22233444444 221  11111  12233333  77777777776655 44455666666666654

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=96.61  E-value=0.0013  Score=42.83  Aligned_cols=41  Identities=17%  Similarity=0.251  Sum_probs=30.5

Q ss_pred             CCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCC
Q 048322          174 KCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPS  217 (498)
Q Consensus       174 ~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~  217 (498)
                      ++|++|+++++....+|..+.  .|++|+.|++++| .++.+|+
T Consensus         1 ~~L~~L~l~~N~i~~l~~~l~--~l~~L~~L~l~~N-~i~~i~~   41 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPELS--NLPNLETLNLSNN-PISDISP   41 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGHGT--TCTTSSEEEETSS-CCSBEGG
T ss_pred             CcceEEEccCCCCcccCchHh--CCCCCCEEEecCC-CCCCCcC
Confidence            478899999998888888666  6899999999986 4555554

...

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=96.34  E-value=0.00084  Score=71.36  Aligned_cols=81  Identities=15%  Similarity=0.188  Sum_probs=40.6

Q ss_pred             CCCceeeccCCCcc-ccccccccCCccccCCCccceeeeccCCCccccCCCCcchHHHHHHhcccccccCCCCccccEEE
Q 048322          252 PSLKILRFENLPEW-WHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSYPRLCRLE  330 (498)
Q Consensus       252 ~~L~~L~l~~~~~l-~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~L~  330 (498)
                      .+|++|++++...+ .+|...+...     ||+|++|.+.+-.-...                 .+.....++|+|..|+
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~-----LPsL~sL~i~~~~~~~~-----------------dF~~lc~sFpNL~sLD  179 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTM-----LPSLRSLVISGRQFDND-----------------DFSQLCASFPNLRSLD  179 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhh-----CcccceEEecCceecch-----------------hHHHHhhccCccceee
Confidence            35666666554333 3444222222     89999999876411110                 0111223355566666


Q ss_pred             ecCCCcceecCCCCCCCccEEEEe
Q 048322          331 VDECKELVCRTPIDSKLIKFMTIS  354 (498)
Q Consensus       331 l~~~~~~~~~~~~~~~~L~~L~l~  354 (498)
                      |+++....+.+...+.+|+.|.+.
T Consensus       180 IS~TnI~nl~GIS~LknLq~L~mr  203 (699)
T KOG3665|consen  180 ISGTNISNLSGISRLKNLQVLSMR  203 (699)
T ss_pred             cCCCCccCcHHHhccccHHHHhcc
Confidence            666555444444445555555554

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.03  E-value=0.00031  Score=72.51  Aligned_cols=112  Identities=21%  Similarity=0.264  Sum_probs=65.9

Q ss_pred             CCCCceEEEeecCCCCC---CccccCCCCCCccEEeEeC-CCCCCCCC----C-CCCccccceeeccccccceecCcccc
Q 048322          173 HKCIKKVAIRNYGGARF---PLWIGDPLFSKIEFLELEN-CNNCVSLP----S-LGLLSSLKHLAVKGLKKLKSIESEVY  243 (498)
Q Consensus       173 ~~~L~~L~l~~~~~~~~---p~~~~~~~l~~L~~L~l~~-c~~~~~lp----~-i~~l~~L~~L~l~~~~~l~~i~~~~~  243 (498)
                      .++|+.|.+.++.....   -....  ..++|+.|++++ |......+    . ...+++|+.|++..|..+....-...
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l  264 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALAL--KCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL  264 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHh--hCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence            47777777777653322   11122  467888888877 33333222    1 23357788888888766555443333


Q ss_pred             CCCCCCCCCCCceeeccCCCcccccc-ccccCCccccCCCccceeeeccCCCc
Q 048322          244 GEGFSMPFPSLKILRFENLPEWWHWD-TDIKGNVHVDIFPRLQELSVVKCPKL  295 (498)
Q Consensus       244 ~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~~~~~~l~~L~~L~l~~c~~l  295 (498)
                      .    ..+++|+.|.+.+|..++.-. ..+.     ..+++|++|++++|..+
T Consensus       265 ~----~~c~~L~~L~l~~c~~lt~~gl~~i~-----~~~~~L~~L~l~~c~~~  308 (482)
T KOG1947|consen  265 A----SRCPNLETLSLSNCSNLTDEGLVSIA-----ERCPSLRELDLSGCHGL  308 (482)
T ss_pred             H----hhCCCcceEccCCCCccchhHHHHHH-----HhcCcccEEeeecCccc
Confidence            2    237788888877776543322 1111     12778888888888665

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.84  E-value=0.0031  Score=58.19  Aligned_cols=85  Identities=13%  Similarity=0.063  Sum_probs=45.9

Q ss_pred             ccCCcccEEEEecCCCCCCcChhhHHHhhhcCCCCCCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCC-CCCCCC
Q 048322          139 EKLNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNN-CVSLPS  217 (498)
Q Consensus       139 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~-~~~lp~  217 (498)
                      ..++++.|+|.||.    ..+   -.++..-+..++.|++|+++.|.....-..+. ..+.+|++|.|.+... ++...+
T Consensus        69 ~~~~v~elDL~~N~----iSd---WseI~~ile~lP~l~~LNls~N~L~s~I~~lp-~p~~nl~~lVLNgT~L~w~~~~s  140 (418)
T KOG2982|consen   69 SVTDVKELDLTGNL----ISD---WSEIGAILEQLPALTTLNLSCNSLSSDIKSLP-LPLKNLRVLVLNGTGLSWTQSTS  140 (418)
T ss_pred             Hhhhhhhhhcccch----hcc---HHHHHHHHhcCccceEeeccCCcCCCccccCc-ccccceEEEEEcCCCCChhhhhh
Confidence            35778888888885    112   22333334444888888888776432211111 1356788887766311 112222


Q ss_pred             -CCCccccceeeccc
Q 048322          218 -LGLLSSLKHLAVKG  231 (498)
Q Consensus       218 -i~~l~~L~~L~l~~  231 (498)
                       +..+|.++.|.++.
T Consensus       141 ~l~~lP~vtelHmS~  155 (418)
T KOG2982|consen  141 SLDDLPKVTELHMSD  155 (418)
T ss_pred             hhhcchhhhhhhhcc
Confidence             44566666666654

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.83  E-value=0.0029  Score=58.37  Aligned_cols=84  Identities=13%  Similarity=0.083  Sum_probs=46.7

Q ss_pred             CCCCceEEEeecCCCCCCcccc-CCCCCCccEEeEeCCCCCCCCCCC-CCccccceeeccccccceecCccccCCCCCCC
Q 048322          173 HKCIKKVAIRNYGGARFPLWIG-DPLFSKIEFLELENCNNCVSLPSL-GLLSSLKHLAVKGLKKLKSIESEVYGEGFSMP  250 (498)
Q Consensus       173 ~~~L~~L~l~~~~~~~~p~~~~-~~~l~~L~~L~l~~c~~~~~lp~i-~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~  250 (498)
                      .++++.|++.+|.......-.. -.++|.|+.|+|+.+..-..+..+ ..+.+|+.|.+.|.    +++..... +++..
T Consensus        70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT----~L~w~~~~-s~l~~  144 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGT----GLSWTQST-SSLDD  144 (418)
T ss_pred             hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCC----CCChhhhh-hhhhc
Confidence            4788999999887654322111 127899999999875422222221 34557888888662    22221111 23344


Q ss_pred             CCCCceeeccC
Q 048322          251 FPSLKILRFEN  261 (498)
Q Consensus       251 ~~~L~~L~l~~  261 (498)
                      +|+++.|.++.
T Consensus       145 lP~vtelHmS~  155 (418)
T KOG2982|consen  145 LPKVTELHMSD  155 (418)
T ss_pred             chhhhhhhhcc
Confidence            56666665543

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=95.75  E-value=0.0031  Score=59.40  Aligned_cols=257  Identities=15%  Similarity=0.106  Sum_probs=119.7

Q ss_pred             hHHHhhhcCCCCCCCceEEEeecCC-CCCCccccC--CCCCCccEEeEeCCCCCC----CCCCCCCccccceeecccccc
Q 048322          162 VEEHVLDILQPHKCIKKVAIRNYGG-ARFPLWIGD--PLFSKIEFLELENCNNCV----SLPSLGLLSSLKHLAVKGLKK  234 (498)
Q Consensus       162 ~~~~~l~~l~~~~~L~~L~l~~~~~-~~~p~~~~~--~~l~~L~~L~l~~c~~~~----~lp~i~~l~~L~~L~l~~~~~  234 (498)
                      ....+.+.+.+...+.+|+++|+.. .+-..|+.+  .+.++|+.-++++- ..+    .+|+     .|+.|       
T Consensus        18 d~~~v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e-----~L~~l-------   84 (382)
T KOG1909|consen   18 DEKDVEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPE-----ALKML-------   84 (382)
T ss_pred             hhhhHHHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHH-----HHHHH-------
Confidence            3456777778889999999999873 333344432  13456666666652 111    1221     01100       


Q ss_pred             ceecCccccCCCCCCCCCCCceeeccCCCccccccccccCCccccCCCccceeeeccCCCccccCCCCcchHHHHHHhcc
Q 048322          235 LKSIESEVYGEGFSMPFPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPSLEILVSKCE  314 (498)
Q Consensus       235 l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~Li~~~~  314 (498)
                          ....      ...|+|++|+++++.--..-..+.  ..-+..+..|++|.+.+| .+   =|..=..|-.-+..|.
T Consensus        85 ----~~aL------~~~~~L~~ldLSDNA~G~~g~~~l--~~ll~s~~~L~eL~L~N~-Gl---g~~ag~~l~~al~~l~  148 (382)
T KOG1909|consen   85 ----SKAL------LGCPKLQKLDLSDNAFGPKGIRGL--EELLSSCTDLEELYLNNC-GL---GPEAGGRLGRALFELA  148 (382)
T ss_pred             ----HHHH------hcCCceeEeeccccccCccchHHH--HHHHHhccCHHHHhhhcC-CC---ChhHHHHHHHHHHHHH
Confidence                0001      113455555554431100000000  000122567777777777 22   1211111111122233


Q ss_pred             cccccCCCCccccEEEecCCCcceecC------CCCCCCccEEEEeccEeeeecCCCCccCCCCCCcCC---CCCCCCCe
Q 048322          315 KLVVSLSSYPRLCRLEVDECKELVCRT------PIDSKLIKFMTISNSSLDMIGCKGMLYDSQAGSSLP---KPMTTTNV  385 (498)
Q Consensus       315 ~l~~~~~~l~~L~~L~l~~~~~~~~~~------~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~l~~lp---~~l~~L~~  385 (498)
                      . ....++-+.|+.+...+|.....+.      ....+.|+.+.+..|.+...+.          +.+.   ..-++|+.
T Consensus       149 ~-~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~----------~al~eal~~~~~Lev  217 (382)
T KOG1909|consen  149 V-NKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGV----------TALAEALEHCPHLEV  217 (382)
T ss_pred             H-HhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchh----------HHHHHHHHhCCccee
Confidence            1 1245556777777777665433110      1124677777776653322211          0000   11167777


Q ss_pred             EEecCC------------CCCCCCCccEEEEcCCCCCCCccccCCCCccC-CCCCCcCeEeeecCCCCCc------CCCC
Q 048322          386 LEFGKL------------LEPGFQILETLVIGNSEQLKPWRQGRGLSMGF-QRLTSLQSLKIWNCPNLTL------FPEV  446 (498)
Q Consensus       386 L~i~~~------------~~~~lp~L~~L~l~~c~~L~~l~~l~~l~~~l-~~l~~L~~L~l~~c~~l~~------lp~~  446 (498)
                      |++.+|            ....+|.|+.|++++|..=+.  ....+-..+ ...++|+.|.+.+|.--..      .+-.
T Consensus       218 Ldl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~--Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~  295 (382)
T KOG1909|consen  218 LDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENE--GAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMA  295 (382)
T ss_pred             eecccchhhhHHHHHHHHHhcccchheeecccccccccc--cHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHh
Confidence            888777            345667788888887753210  000000111 2357788888777532111      0101


Q ss_pred             CccccccceeeccCc
Q 048322          447 GLPSSLLDLYVNNCP  461 (498)
Q Consensus       447 ~~~~sL~~L~i~~c~  461 (498)
                      . -+.|..|++++|.
T Consensus       296 e-k~dL~kLnLngN~  309 (382)
T KOG1909|consen  296 E-KPDLEKLNLNGNR  309 (382)
T ss_pred             c-chhhHHhcCCccc
Confidence            1 2567777777764

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=95.45  E-value=0.025  Score=49.45  Aligned_cols=84  Identities=20%  Similarity=0.337  Sum_probs=47.6

Q ss_pred             CCCccEEeEeCCCCCCCCCCCCCccccceeeccccccceecCccccCCCCCCCCCCCceeeccCCCccccccccccCCcc
Q 048322          198 FSKIEFLELENCNNCVSLPSLGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFENLPEWWHWDTDIKGNVH  277 (498)
Q Consensus       198 l~~L~~L~l~~c~~~~~lp~i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~  277 (498)
                      +.+...++|++ +.+..++.+..++.|..|.+.+ +.++.|...+..     .+++|+.|.+.++ ++.++.    .-..
T Consensus        41 ~d~~d~iDLtd-Ndl~~l~~lp~l~rL~tLll~n-NrIt~I~p~L~~-----~~p~l~~L~LtnN-si~~l~----dl~p  108 (233)
T KOG1644|consen   41 LDQFDAIDLTD-NDLRKLDNLPHLPRLHTLLLNN-NRITRIDPDLDT-----FLPNLKTLILTNN-SIQELG----DLDP  108 (233)
T ss_pred             ccccceecccc-cchhhcccCCCccccceEEecC-Ccceeeccchhh-----hccccceEEecCc-chhhhh----hcch
Confidence            34555666766 3566666666677777777765 456666654432     4666777776654 333332    0011


Q ss_pred             ccCCCccceeeeccCC
Q 048322          278 VDIFPRLQELSVVKCP  293 (498)
Q Consensus       278 ~~~l~~L~~L~l~~c~  293 (498)
                      +..+|.|++|.+-+++
T Consensus       109 La~~p~L~~Ltll~Np  124 (233)
T KOG1644|consen  109 LASCPKLEYLTLLGNP  124 (233)
T ss_pred             hccCCccceeeecCCc
Confidence            1226777777776664

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.44  E-value=0.00062  Score=62.02  Aligned_cols=60  Identities=28%  Similarity=0.381  Sum_probs=29.1

Q ss_pred             CCCccEEeEeCCCCCCCCCCCCCccccceeeccccccceecCccccCCCCCCCCCCCceeeccCCC
Q 048322          198 FSKIEFLELENCNNCVSLPSLGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFENLP  263 (498)
Q Consensus       198 l~~L~~L~l~~c~~~~~lp~i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~  263 (498)
                      ++.|+.|.|+- +.+..+.++..+.+|++|+|..+ .+..+..-+|-    +.+|+|+.|+|..++
T Consensus        40 Mp~lEVLsLSv-NkIssL~pl~rCtrLkElYLRkN-~I~sldEL~YL----knlpsLr~LWL~ENP   99 (388)
T KOG2123|consen   40 MPLLEVLSLSV-NKISSLAPLQRCTRLKELYLRKN-CIESLDELEYL----KNLPSLRTLWLDENP   99 (388)
T ss_pred             cccceeEEeec-cccccchhHHHHHHHHHHHHHhc-ccccHHHHHHH----hcCchhhhHhhccCC
Confidence            55555555554 34555555555556666655542 23333322221    235555555554443

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.20  E-value=0.00071  Score=69.79  Aligned_cols=117  Identities=20%  Similarity=0.250  Sum_probs=60.3

Q ss_pred             CCCccEEeEeCCCCCCC--C-CCCCCccccceeecccc-ccceecCccccCCCCCCCCCCCceeeccCCCcccccc-ccc
Q 048322          198 FSKIEFLELENCNNCVS--L-PSLGLLSSLKHLAVKGL-KKLKSIESEVYGEGFSMPFPSLKILRFENLPEWWHWD-TDI  272 (498)
Q Consensus       198 l~~L~~L~l~~c~~~~~--l-p~i~~l~~L~~L~l~~~-~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~  272 (498)
                      +++|+.|.+.+|..+..  + +....+++|+.|++++| ......+....  .....+++|+.|++..+..++... ...
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~--~~~~~~~~L~~l~l~~~~~isd~~l~~l  264 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLL--LLLSICRKLKSLDLSGCGLVTDIGLSAL  264 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhh--hhhhhcCCcCccchhhhhccCchhHHHH
Confidence            57777777777766665  2 22556777888887763 22222221000  011235667777776665443332 111


Q ss_pred             cCCccccCCCccceeeeccCCCccccCCCCcchHHHHHHhcccccccCCCCccccEEEecCCCcc
Q 048322          273 KGNVHVDIFPRLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSYPRLCRLEVDECKEL  337 (498)
Q Consensus       273 ~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~L~l~~~~~~  337 (498)
                      ...     +++|++|.+.+|+.++ .  .   .+..          ....+++|++|+++.|...
T Consensus       265 ~~~-----c~~L~~L~l~~c~~lt-~--~---gl~~----------i~~~~~~L~~L~l~~c~~~  308 (482)
T KOG1947|consen  265 ASR-----CPNLETLSLSNCSNLT-D--E---GLVS----------IAERCPSLRELDLSGCHGL  308 (482)
T ss_pred             Hhh-----CCCcceEccCCCCccc-h--h---HHHH----------HHHhcCcccEEeeecCccc
Confidence            111     5677777766665432 0  0   0110          1122556777777777665

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=94.35  E-value=0.015  Score=58.71  Aligned_cols=189  Identities=19%  Similarity=0.135  Sum_probs=110.0

Q ss_pred             hcccCCcccEEEEecCCCCCCcChhhHHHhhhcCCCCCCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCC
Q 048322          137 LCEKLNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLP  216 (498)
Q Consensus       137 l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp  216 (498)
                      +...++|..|++.-+.          ...+...+..+.+|++|+++++.+..+...-   .++.|+.|++.+| .+..++
T Consensus        91 l~~~~~l~~l~l~~n~----------i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~---~l~~L~~L~l~~N-~i~~~~  156 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDNK----------IEKIENLLSSLVNLQVLDLSFNKITKLEGLS---TLTLLKELNLSGN-LISDIS  156 (414)
T ss_pred             cccccceeeeeccccc----------hhhcccchhhhhcchheeccccccccccchh---hccchhhheeccC-cchhcc
Confidence            6678888888886653          1112222555699999999999887765532   4777999999995 788888


Q ss_pred             CCCCccccceeeccccccceecCccccCCCCCCCCCCCceeeccCCCccccccccccCCccccCCCccceeeeccCCCcc
Q 048322          217 SLGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLS  296 (498)
Q Consensus       217 ~i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~  296 (498)
                      .+..+++|+.++++++. +..+....     ...+.+|+.+.+.++.. ..+..       +..+..+..+++.++ .+.
T Consensus       157 ~~~~l~~L~~l~l~~n~-i~~ie~~~-----~~~~~~l~~l~l~~n~i-~~i~~-------~~~~~~l~~~~l~~n-~i~  221 (414)
T KOG0531|consen  157 GLESLKSLKLLDLSYNR-IVDIENDE-----LSELISLEELDLGGNSI-REIEG-------LDLLKKLVLLSLLDN-KIS  221 (414)
T ss_pred             CCccchhhhcccCCcch-hhhhhhhh-----hhhccchHHHhccCCch-hcccc-------hHHHHHHHHhhcccc-cce
Confidence            88889999999998853 44444310     12477888888776522 22110       000222333333333 111


Q ss_pred             ccCC--CCcc--hHHHH-HHhccccc--ccCCCCccccEEEecCCCcceecCCCCCCCccEEEEec
Q 048322          297 GKLP--ELLP--SLEIL-VSKCEKLV--VSLSSYPRLCRLEVDECKELVCRTPIDSKLIKFMTISN  355 (498)
Q Consensus       297 ~~lp--~~l~--~L~~L-i~~~~~l~--~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~  355 (498)
                       .+-  ..+.  +|+.+ +...+.-.  ..++.+..+..|++.++...........+.+..+....
T Consensus       222 -~~~~l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~~~~~~~~~~~~~~~~~  286 (414)
T KOG0531|consen  222 -KLEGLNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISNLEGLERLPKLSELWLND  286 (414)
T ss_pred             -eccCcccchhHHHHHHhcccCccccccccccccccccccchhhccccccccccccchHHHhccCc
Confidence             111  0112  26666 44443322  34566778888888777655544444444444444443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=94.15  E-value=0.063  Score=47.04  Aligned_cols=93  Identities=19%  Similarity=0.192  Sum_probs=57.1

Q ss_pred             hhhcCCCCCCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCC--CCCCCCCCCccccceeeccccccceecCcccc
Q 048322          166 VLDILQPHKCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNN--CVSLPSLGLLSSLKHLAVKGLKKLKSIESEVY  243 (498)
Q Consensus       166 ~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~--~~~lp~i~~l~~L~~L~l~~~~~l~~i~~~~~  243 (498)
                      -++.+..++.|..|.+.+|.+..+-..+.. .+++|..|.|.+++.  ++.+-++..+|.|++|.+-+++ ++.....  
T Consensus        56 ~l~~lp~l~rL~tLll~nNrIt~I~p~L~~-~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Np-v~~k~~Y--  131 (233)
T KOG1644|consen   56 KLDNLPHLPRLHTLLLNNNRITRIDPDLDT-FLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNP-VEHKKNY--  131 (233)
T ss_pred             hcccCCCccccceEEecCCcceeeccchhh-hccccceEEecCcchhhhhhcchhccCCccceeeecCCc-hhcccCc--
Confidence            345555567888888888887777555553 567888888887532  2345557778888888776643 2222110  


Q ss_pred             CCCCCCCCCCCceeeccCC
Q 048322          244 GEGFSMPFPSLKILRFENL  262 (498)
Q Consensus       244 ~~~~~~~~~~L~~L~l~~~  262 (498)
                      ..--+..+|+|+.|++.+.
T Consensus       132 R~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  132 RLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             eeEEEEecCcceEeehhhh
Confidence            0011224777888877654

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=93.24  E-value=0.025  Score=51.40  Aligned_cols=55  Identities=20%  Similarity=0.199  Sum_probs=27.7

Q ss_pred             CCceEEEeecCCCCCCccccCCCCCCccEEeEeCC--CCCCCCCC-CCCccccceeecccc
Q 048322          175 CIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENC--NNCVSLPS-LGLLSSLKHLAVKGL  232 (498)
Q Consensus       175 ~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c--~~~~~lp~-i~~l~~L~~L~l~~~  232 (498)
                      +|+.|++.+.+.+++-..-   .+++|+.|.++.+  .....++. ...+|+|++|.++++
T Consensus        44 ~le~ls~~n~gltt~~~~P---~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N  101 (260)
T KOG2739|consen   44 ELELLSVINVGLTTLTNFP---KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN  101 (260)
T ss_pred             chhhhhhhccceeecccCC---CcchhhhhcccCCcccccccceehhhhCCceeEEeecCC
Confidence            3444444444433332211   3566777777665  23334443 344567777766663

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=93.12  E-value=0.058  Score=49.16  Aligned_cols=77  Identities=21%  Similarity=0.293  Sum_probs=43.0

Q ss_pred             ccceeeeccCCCccccCCC---CcchHHHH-HHhccccc-ccCCCCccccEEEecCCCcceecC----CCCCCCccEEEE
Q 048322          283 RLQELSVVKCPKLSGKLPE---LLPSLEIL-VSKCEKLV-VSLSSYPRLCRLEVDECKELVCRT----PIDSKLIKFMTI  353 (498)
Q Consensus       283 ~L~~L~l~~c~~l~~~lp~---~l~~L~~L-i~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~----~~~~~~L~~L~l  353 (498)
                      ..+.+.+.+|....+.+..   .+..|+.+ +.++.-.+ ..+|.+|+|++|.++.+..-...+    ....|+|++|++
T Consensus        19 ~v~~l~lD~~~s~~g~~~gl~d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~l   98 (260)
T KOG2739|consen   19 QVDELFLDNARSGAGKLGGLTDEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNL   98 (260)
T ss_pred             hhhhhhcchhhhcCCCcccccccccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEee
Confidence            3455666666544433443   34555656 55554422 267778888888888773222111    112477888887


Q ss_pred             eccEee
Q 048322          354 SNSSLD  359 (498)
Q Consensus       354 ~~~~l~  359 (498)
                      ++|.+.
T Consensus        99 s~Nki~  104 (260)
T KOG2739|consen   99 SGNKIK  104 (260)
T ss_pred             cCCccc
Confidence            776443

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=93.11  E-value=0.006  Score=62.99  Aligned_cols=139  Identities=17%  Similarity=0.112  Sum_probs=84.0

Q ss_pred             hhhHHHHHHHHHHHHHHHhhhccccccC-CCCCCccccCCCCC-CccCCCchHHhHHHhhcccCCcccEEEEecCCCCCC
Q 048322           80 GSKIKDITSRLEQLCQDRIELGLQRIAG-GASSPTAAAHQRPP-SSSVPTERENAREAALCEKLNLHALTLEWGSQFDNS  157 (498)
Q Consensus        80 ~~~i~~i~~~l~~i~~~~~~~~~~~~~~-~~~~~~~~~~~r~~-~~s~v~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~  157 (498)
                      +.-|..++..|+.+..-+.--.+..... .+........|... +.+.--+.--+.+..+.=...++.|+|+.|..    
T Consensus       124 ~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~----  199 (1096)
T KOG1859|consen  124 AKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKF----  199 (1096)
T ss_pred             hhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhh----
Confidence            6678888888888866543322221110 01111112223321 11111122223444566678899999987752    


Q ss_pred             cChhhHHHhhhcCCCCCCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCCCCCccccceeecccc
Q 048322          158 RDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPSLGLLSSLKHLAVKGL  232 (498)
Q Consensus       158 ~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~i~~l~~L~~L~l~~~  232 (498)
                            . -.+.|..+++|++|+|+.|....+|..-.. .+ +|+.|+|++| .++.+-.+.+|++|+.|+++.+
T Consensus       200 ------~-~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~-gc-~L~~L~lrnN-~l~tL~gie~LksL~~LDlsyN  264 (1096)
T KOG1859|consen  200 ------T-KVDNLRRLPKLKHLDLSYNCLRHVPQLSMV-GC-KLQLLNLRNN-ALTTLRGIENLKSLYGLDLSYN  264 (1096)
T ss_pred             ------h-hhHHHHhcccccccccccchhccccccchh-hh-hheeeeeccc-HHHhhhhHHhhhhhhccchhHh
Confidence                  1 122455669999999999998888874331 23 4899999884 6777777888999999998864

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=92.65  E-value=0.074  Score=26.61  Aligned_cols=16  Identities=38%  Similarity=0.563  Sum_probs=6.7

Q ss_pred             CcCeEeeecCCCCCcCC
Q 048322          428 SLQSLKIWNCPNLTLFP  444 (498)
Q Consensus       428 ~L~~L~l~~c~~l~~lp  444 (498)
                      +|+.|++++|. ++++|
T Consensus         2 ~L~~L~l~~n~-L~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNR-LTSLP   17 (17)
T ss_dssp             T-SEEEETSS---SSE-
T ss_pred             ccCEEECCCCC-CCCCc
Confidence            45566666553 55443

...

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.59  E-value=0.0069  Score=55.42  Aligned_cols=108  Identities=18%  Similarity=0.153  Sum_probs=70.4

Q ss_pred             HhhcccCCcccEEEEecCCCCCCcChhhHHHhhhcCCCCCCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCC
Q 048322          135 AALCEKLNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVS  214 (498)
Q Consensus       135 ~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~  214 (498)
                      ++-.+..+.++|++ |+...+       +..+-   ...+.|++|.++-|.+..+....   .+++|+.|+|..| .+..
T Consensus        13 aK~sdl~~vkKLNc-wg~~L~-------DIsic---~kMp~lEVLsLSvNkIssL~pl~---rCtrLkElYLRkN-~I~s   77 (388)
T KOG2123|consen   13 AKCSDLENVKKLNC-WGCGLD-------DISIC---EKMPLLEVLSLSVNKISSLAPLQ---RCTRLKELYLRKN-CIES   77 (388)
T ss_pred             HHhhHHHHhhhhcc-cCCCcc-------HHHHH---HhcccceeEEeeccccccchhHH---HHHHHHHHHHHhc-cccc
Confidence            34445667777877 444321       11122   23488999999999887775543   4789999999874 4444


Q ss_pred             CC---CCCCccccceeeccccccceecCccccCCCCCCCCCCCceee
Q 048322          215 LP---SLGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILR  258 (498)
Q Consensus       215 lp---~i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~  258 (498)
                      +.   .+.++|+|+.|+|..++....-|.++.. ..+..+|+|++|+
T Consensus        78 ldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~-~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   78 LDELEYLKNLPSLRTLWLDENPCCGEAGQNYRR-KVLRVLPNLKKLD  123 (388)
T ss_pred             HHHHHHHhcCchhhhHhhccCCcccccchhHHH-HHHHHcccchhcc
Confidence            44   3678899999999987766655554322 2234578888776

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.33  E-value=0.018  Score=50.25  Aligned_cols=66  Identities=20%  Similarity=0.249  Sum_probs=45.3

Q ss_pred             CCCCCCccEEEEcCCCCCCCccccCCCCccCC-CCCCcCeEeeecCCCCCcCCCC--CccccccceeeccCchh
Q 048322          393 EPGFQILETLVIGNSEQLKPWRQGRGLSMGFQ-RLTSLQSLKIWNCPNLTLFPEV--GLPSSLLDLYVNNCPRL  463 (498)
Q Consensus       393 ~~~lp~L~~L~l~~c~~L~~l~~l~~l~~~l~-~l~~L~~L~l~~c~~l~~lp~~--~~~~sL~~L~i~~c~~l  463 (498)
                      +..+++++.|.+.+|..+..|-     -+.++ -.++|+.|+|++|+.+++-.-.  .-+++|+.|.+++.|..
T Consensus       121 L~~l~~i~~l~l~~ck~~dD~~-----L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~v  189 (221)
T KOG3864|consen  121 LRDLRSIKSLSLANCKYFDDWC-----LERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPYV  189 (221)
T ss_pred             HhccchhhhheeccccchhhHH-----HHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchhh
Confidence            4567778888888888886540     01111 3578999999999988875322  12478888888887754

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.65  E-value=0.063  Score=47.02  Aligned_cols=41  Identities=29%  Similarity=0.584  Sum_probs=24.2

Q ss_pred             CCCCceeeccCCCcccccc-ccccCCccccCCCccceeeeccCCCcc
Q 048322          251 FPSLKILRFENLPEWWHWD-TDIKGNVHVDIFPRLQELSVVKCPKLS  296 (498)
Q Consensus       251 ~~~L~~L~l~~~~~l~~~~-~~~~~~~~~~~l~~L~~L~l~~c~~l~  296 (498)
                      +++++.|.+.+|..+..|. ....+.     .++|+.|+|++|+.++
T Consensus       124 l~~i~~l~l~~ck~~dD~~L~~l~~~-----~~~L~~L~lsgC~rIT  165 (221)
T KOG3864|consen  124 LRSIKSLSLANCKYFDDWCLERLGGL-----APSLQDLDLSGCPRIT  165 (221)
T ss_pred             cchhhhheeccccchhhHHHHHhccc-----ccchheeeccCCCeec
Confidence            4455555666666666665 222222     6777777777777665

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=88.81  E-value=0.17  Score=27.19  Aligned_cols=21  Identities=19%  Similarity=0.381  Sum_probs=14.7

Q ss_pred             ccceeeeccCCCccccCCCCcch
Q 048322          283 RLQELSVVKCPKLSGKLPELLPS  305 (498)
Q Consensus       283 ~L~~L~l~~c~~l~~~lp~~l~~  305 (498)
                      +|++|++++| .++ .+|..|.+
T Consensus         1 ~L~~Ldls~n-~l~-~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGN-NLT-SIPSSFSN   21 (22)
T ss_dssp             TESEEEETSS-EES-EEGTTTTT
T ss_pred             CccEEECCCC-cCE-eCChhhcC
Confidence            4778888888 676 77765544

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=88.35  E-value=0.016  Score=47.35  Aligned_cols=66  Identities=14%  Similarity=0.036  Sum_probs=35.3

Q ss_pred             CCCcCCCCC----CCCCeEEecCC-------CCCCCCCccEEEEcCCCCCCCccccCCCCccCCCCCCcCeEeeecCCCC
Q 048322          372 AGSSLPKPM----TTTNVLEFGKL-------LEPGFQILETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPNL  440 (498)
Q Consensus       372 ~l~~lp~~l----~~L~~L~i~~~-------~~~~lp~L~~L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~~l  440 (498)
                      .++.+|..+    +.+++|++.+|       .+..+|.|+.|+++.++-..       +|..+..|.+|-.|+..+ +.+
T Consensus        64 ~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~-------~p~vi~~L~~l~~Lds~~-na~  135 (177)
T KOG4579|consen   64 GFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNA-------EPRVIAPLIKLDMLDSPE-NAR  135 (177)
T ss_pred             hhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCcccc-------chHHHHHHHhHHHhcCCC-Ccc
Confidence            444444433    45566666666       23456677777777644221       255555555665565544 344


Q ss_pred             CcCCC
Q 048322          441 TLFPE  445 (498)
Q Consensus       441 ~~lp~  445 (498)
                      ..+|-
T Consensus       136 ~eid~  140 (177)
T KOG4579|consen  136 AEIDV  140 (177)
T ss_pred             ccCcH
Confidence            44444

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=87.21  E-value=0.056  Score=44.32  Aligned_cols=64  Identities=22%  Similarity=0.329  Sum_probs=43.1

Q ss_pred             hhcCCCCCCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCC-CCCccccceeecccc
Q 048322          167 LDILQPHKCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPS-LGLLSSLKHLAVKGL  232 (498)
Q Consensus       167 l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~-i~~l~~L~~L~l~~~  232 (498)
                      +..+....+|+..++++|....+|..+.. .++.++.|++++ +.+..+|. +..++.|+.|+++.+
T Consensus        46 vy~l~~~~el~~i~ls~N~fk~fp~kft~-kf~t~t~lNl~~-neisdvPeE~Aam~aLr~lNl~~N  110 (177)
T KOG4579|consen   46 VYMLSKGYELTKISLSDNGFKKFPKKFTI-KFPTATTLNLAN-NEISDVPEELAAMPALRSLNLRFN  110 (177)
T ss_pred             HHHHhCCceEEEEecccchhhhCCHHHhh-ccchhhhhhcch-hhhhhchHHHhhhHHhhhcccccC
Confidence            33344446677778888887777776653 456777788777 36667775 666777777777653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	498
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-11
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	4e-09
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	5e-07
3qfl_A	115	MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-	6e-07

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 65.3 bits (158), Expect = 3e-11
 Identities = 50/382 (13%), Positives = 121/382 (31%), Gaps = 88/382 (23%)

Query: 154 FDNSRDVAVEEHVLDILQPH----------KCIKKVAI-RNYGGARFPLWIGDPLFSKIE 202
             + ++  V++ V ++L+ +          +  +   + R Y   R  L+  + +F+K  
Sbjct: 71  LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY- 129

Query: 203 FLELENCNNCVSLPSLGLLSSLKHLAVKGLKKLKSIES-EVYG-EGF---SMPFPSLKIL 257
                      ++  L     L+    + L +L+  ++  + G  G     +        
Sbjct: 130 -----------NVSRLQPYLKLR----QALLELRPAKNVLIDGVLGSGKTWVALDVCLSY 174

Query: 258 RFE-NLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPSLEILVSKCEKL 316
           + +  +     W      N    +   LQ+L      ++             +  +   +
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPETVLEMLQKL----LYQIDPNWTSRSDHSSNIKLRIHSI 230

Query: 317 VVSLS------SYPRLCRLEVDE-------------CKELVCRTPIDSKLIKFMTISNSS 357
              L        Y   C L +               CK L+  T    ++  F++ + ++
Sbjct: 231 QAELRRLLKSKPYEN-CLLVLLNVQNAKAWNAFNLSCKILL--TTRFKQVTDFLSAATTT 287

Query: 358 -LDMIGCKGMLYDSQA-----------GSSLPKPMTTTNVLE---FGKLLEPGFQILETL 402
            + +      L   +               LP+ + TTN        + +  G    +  
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWD-- 345

Query: 403 VIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPNLTLFPE-VGLPSSLLDLY----V 457
              N + +   +    +      L   +  K+++   L++FP    +P+ LL L     +
Sbjct: 346 ---NWKHVNCDKLTTIIESSLNVLEPAEYRKMFD--RLSVFPPSAHIPTILLSLIWFDVI 400

Query: 458 NNCPR--LKKVCKRDQGKEWPK 477
            +     + K+ K    ++ PK
Sbjct: 401 KSDVMVVVNKLHKYSLVEKQPK 422

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* Length = 549

 Score = 57.7 bits (139), Expect = 4e-09
 Identities = 20/137 (14%), Positives = 42/137 (30%), Gaps = 5/137 (3%)

Query: 5   VLSDAEEKRLTDEAVKMWLDELQDLAYDAEDILDGFGTQALESKLMAKNQDSTGQVLSFI 64
            LS A  + + D   +  L  L+      ED  +     +   + +A       +  S  
Sbjct: 9   ALSTAHTRLIHDFEPRDALTYLEGKNIFTEDHSELISKMSTRLERIANFLRIYRRQASE- 67

Query: 65  PASLNPNAIMSNYSMGSKIKDITSRLEQLCQDRIELGLQRIAGGASSPTAAAHQRPPSSS 124
              L P     NY+  S + D          +  +L L+ +            ++    +
Sbjct: 68  ---LGPLIDFFNYNNQSHLADFLEDYIDFAINEPDL-LRPVVIAPQFSRQMLDRKLLLGN 123

Query: 125 VPTERENAREAALCEKL 141
           VP +          +++
Sbjct: 124 VPKQMTCYIREYHVDRV 140

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} Length = 591

 Score = 51.4 bits (123), Expect = 5e-07
 Identities = 19/146 (13%), Positives = 42/146 (28%), Gaps = 18/146 (12%)

Query: 3   QAVLSDAEEKRLTDEAVKMWLDELQDLAYDAEDILDGFGTQALESKLMAKNQDSTGQVLS 62
           +  L    E    D      +D +      ++  L     + + ++   + +     ++ 
Sbjct: 6   RNCLLQHREALEKDIKTSYIMDHMI-----SDGFLTISEEEKVRNEPTQQQR--AAMLIK 58

Query: 63  FIPASLNPNAI-MSNYSMGSKIKDITSRLEQLCQDRIELGLQRIAGGASSPTAAAHQRPP 121
            I    N + +   N  +    KD+ + L            +    G +S          
Sbjct: 59  MILKKDNDSYVSFYNALLHEGYKDLAALLHDGIPVVSSSSGKDSVSGITS---YVRTVLC 115

Query: 122 SSSVPTE------RENAREAALCEKL 141
              VP        R+     A+ +KL
Sbjct: 116 EGGVPQRPVVFVTRKKLVN-AIQQKL 140

>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare} Length = 115

 Score = 47.1 bits (112), Expect = 6e-07
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%)

Query: 1  MIQAVLSDAEEKRL--TDEAVKMWLDELQDLAYDAEDILDGF 40
           + A L    E      D   K+W DE+++L+Y  ED++D F
Sbjct: 37 SMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVDKF 78

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	498
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.86
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.8
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.8
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.79
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.79
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.78
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.78
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.78
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.77
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.77
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.76
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.76
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.76
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.76
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.75
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.75
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.75
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.75
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.75
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.74
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.74
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.73
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.73
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.73
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.72
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.72
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.71
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.71
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.71
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.7
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.7
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.7
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.69
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.69
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.69
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.69
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.68
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.67
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.67
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.67
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.66
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.66
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.66
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.66
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.66
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.66
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.66
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.65
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.65
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.65
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.64
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.63
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.62
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.61
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.61
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.61
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.61
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.59
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.59
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.58
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.56
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.55
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.54
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.52
3qfl_A	115	MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-	99.51
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.51
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.5
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.5
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.48
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.48
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.46
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.45
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.42
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.42
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.42
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.41
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.4
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.39
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.39
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.39
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.38
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.38
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.32
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.31
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.29
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.28
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.27
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.26
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.22
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.22
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.22
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.2
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.19
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.18
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.18
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.17
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.15
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.15
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.12
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.11
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.1
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.1
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.01
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.0
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.99
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.99
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.97
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.97
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	98.92
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.87
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.87
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.87
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.85
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.83
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.81
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.74
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.74
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.73
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.73
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.72
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.72
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.69
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.68
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.63
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.62
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.58
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.57
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.56
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.55
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.53
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.5
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.47
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.42
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.22
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.11
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.1
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.09
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.08
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	97.98
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	97.98
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.96
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.93
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	97.92
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.91
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.9
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.77
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.38
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	96.72
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	96.64
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	96.61
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	95.9
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	95.83
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	95.78
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	95.12
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	94.15
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	90.49
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	89.99
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	88.53
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	81.9

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.86  E-value=1.1e-22  Score=220.04  Aligned_cols=326  Identities=14%  Similarity=0.077  Sum_probs=152.8

Q ss_pred             HhhcccCCcccEEEEecCCCCCCcChhhHHHhhh-cCCCCCCCceEEEeecCCC-CCCccccCCCCC-CccEEeEeCCCC
Q 048322          135 AALCEKLNLHALTLEWGSQFDNSRDVAVEEHVLD-ILQPHKCIKKVAIRNYGGA-RFPLWIGDPLFS-KIEFLELENCNN  211 (498)
Q Consensus       135 ~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~-~l~~~~~L~~L~l~~~~~~-~~p~~~~~~~l~-~L~~L~l~~c~~  211 (498)
                      ..+.++++|+.|+++.+.-.         ..+.. .+..+++|++|+++++... .+|.++.  .++ +|++|++++|..
T Consensus       312 ~~~~~l~~L~~L~L~~n~l~---------~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~--~l~~~L~~L~Ls~N~l  380 (768)
T 3rgz_A          312 PFFGSCSLLESLALSSNNFS---------GELPMDTLLKMRGLKVLDLSFNEFSGELPESLT--NLSASLLTLDLSSNNF  380 (768)
T ss_dssp             GGGGGCTTCCEEECCSSEEE---------EECCHHHHTTCTTCCEEECCSSEEEECCCTTHH--HHTTTCSEEECCSSEE
T ss_pred             hHHhcCCCccEEECCCCccc---------CcCCHHHHhcCCCCCEEeCcCCccCccccHHHH--hhhcCCcEEEccCCCc
Confidence            45667888888888766410         00111 1344567777777776644 5555554  233 455555555433


Q ss_pred             CC--------------------------CCCC-CCCccccceeeccccccceecCccccCCCCCCCCCCCceeeccCCCc
Q 048322          212 CV--------------------------SLPS-LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFENLPE  264 (498)
Q Consensus       212 ~~--------------------------~lp~-i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~  264 (498)
                      ..                          .+|. ++.+++|++|++++|.-...+|..+.      .+++|+.|++.++. 
T Consensus       381 ~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~------~l~~L~~L~L~~n~-  453 (768)
T 3rgz_A          381 SGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLG------SLSKLRDLKLWLNM-  453 (768)
T ss_dssp             EEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGG------GCTTCCEEECCSSC-
T ss_pred             CCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHh------cCCCCCEEECCCCc-
Confidence            22                          3333 44444444444444321112222221      25555555555442 


Q ss_pred             cccccccccCCccccCCCccceeeeccCCCccccCCCCcch---HHHH-HHhcccccccCC----CCccccEEEecCCCc
Q 048322          265 WWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPS---LEIL-VSKCEKLVVSLS----SYPRLCRLEVDECKE  336 (498)
Q Consensus       265 l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~---L~~L-i~~~~~l~~~~~----~l~~L~~L~l~~~~~  336 (498)
                      +.+..+.     .+..+++|++|++++| .+.+.+|..+..   |+.| +.+|. +.+.+|    .+++|++|++++|..
T Consensus       454 l~~~~p~-----~~~~l~~L~~L~L~~N-~l~~~~p~~l~~l~~L~~L~L~~N~-l~~~~p~~~~~l~~L~~L~L~~N~l  526 (768)
T 3rgz_A          454 LEGEIPQ-----ELMYVKTLETLILDFN-DLTGEIPSGLSNCTNLNWISLSNNR-LTGEIPKWIGRLENLAILKLSNNSF  526 (768)
T ss_dssp             CCSCCCG-----GGGGCTTCCEEECCSS-CCCSCCCGGGGGCTTCCEEECCSSC-CCSCCCGGGGGCTTCCEEECCSSCC
T ss_pred             ccCcCCH-----HHcCCCCceEEEecCC-cccCcCCHHHhcCCCCCEEEccCCc-cCCcCChHHhcCCCCCEEECCCCcc
Confidence            2222111     1223677777777776 344466655443   3334 55543 222333    377888888888876


Q ss_pred             ce-ec-CCCCCCCccEEEEeccEeeeecCC------CCc----cC---------------C-------------------
Q 048322          337 LV-CR-TPIDSKLIKFMTISNSSLDMIGCK------GML----YD---------------S-------------------  370 (498)
Q Consensus       337 ~~-~~-~~~~~~~L~~L~l~~~~l~~~~~~------~l~----~~---------------~-------------------  370 (498)
                      .. ++ ....+++|+.|++++|.+...-..      .+.    ..               |                   
T Consensus       527 ~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  606 (768)
T 3rgz_A          527 SGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNR  606 (768)
T ss_dssp             EEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGG
T ss_pred             cCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhc
Confidence            53 22 334478888888888865421000      000    00               0                   


Q ss_pred             -----------CCCC-cCCC---CCCCCCeEEecCC--------CCCCCCCccEEEEcCCCCCCCc--------------
Q 048322          371 -----------QAGS-SLPK---PMTTTNVLEFGKL--------LEPGFQILETLVIGNSEQLKPW--------------  413 (498)
Q Consensus       371 -----------~~l~-~lp~---~l~~L~~L~i~~~--------~~~~lp~L~~L~l~~c~~L~~l--------------  413 (498)
                                 ..+. .+|.   .+++|+.|++++|        .++.++.|+.|+++++.--..+              
T Consensus       607 l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~Ld  686 (768)
T 3rgz_A          607 LSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILD  686 (768)
T ss_dssp             GGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred             cccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEE
Confidence                       0000 0111   1244555555555        1233444555555543211111              


Q ss_pred             ---ccc-CCCCccCCCCCCcCeEeeecCCCCCcCCCCCccccccceeeccCchhH----hhhccCCCCCCCCcCCCCeEE
Q 048322          414 ---RQG-RGLSMGFQRLTSLQSLKIWNCPNLTLFPEVGLPSSLLDLYVNNCPRLK----KVCKRDQGKEWPKIAHIPWVV  485 (498)
Q Consensus       414 ---~~l-~~l~~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~sL~~L~i~~c~~l~----~~~~~~~~~~~~~i~hi~~~~  485 (498)
                         +.+ ..+|..+..+++|++|++++|+..+.+|..+.+.++....+.++|.|.    ..|....+++|++|+|+++++
T Consensus       687 Ls~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~~C~~~~~~~~~~~~~~~~~~  766 (768)
T 3rgz_A          687 LSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNADGYAHHQRSHHHH  766 (768)
T ss_dssp             CCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSCCCCSCC--------------
T ss_pred             CCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCcCCCCCccCCCCCCCCccccC
Confidence               000 013566666666666666666555566665555566666666666442    268889999999999999875

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.80  E-value=1.5e-19  Score=191.33  Aligned_cols=255  Identities=13%  Similarity=0.089  Sum_probs=144.4

Q ss_pred             CCCceEEEeecCCCCCCc--cccCCCCCCccEEeEeCCCCCCCCCCCCCccccceeeccccccceecCccccCCCCCCCC
Q 048322          174 KCIKKVAIRNYGGARFPL--WIGDPLFSKIEFLELENCNNCVSLPSLGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPF  251 (498)
Q Consensus       174 ~~L~~L~l~~~~~~~~p~--~~~~~~l~~L~~L~l~~c~~~~~lp~i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~  251 (498)
                      ++|++|+++++....+|.  +++  .+++|++|++++|...+.+|.++.+++|++|+++++ .+..+|..+..      +
T Consensus       305 ~~L~~L~L~~n~l~~ip~~~~l~--~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N-~l~~lp~~l~~------l  375 (636)
T 4eco_A          305 EKIQIIYIGYNNLKTFPVETSLQ--KMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYN-QITEIPANFCG------F  375 (636)
T ss_dssp             GTCCEEECCSSCCSSCCCHHHHT--TCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSS-EEEECCTTSEE------E
T ss_pred             CCCCEEECCCCcCCccCchhhhc--cCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCC-ccccccHhhhh------h
Confidence            555555555555555555  454  355666666655433225555555566666666553 34455544332      5


Q ss_pred             CC-CceeeccCCCccccccccccCCccccCCCccceeeeccCCCccccCCCCcc----------hHHHH-HHhccccccc
Q 048322          252 PS-LKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLP----------SLEIL-VSKCEKLVVS  319 (498)
Q Consensus       252 ~~-L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~----------~L~~L-i~~~~~l~~~  319 (498)
                      ++ |++|+++++. ++.++.. ...   ..+++|+.|++++| .+.+.+|..++          +|+.| +.++.- . .
T Consensus       376 ~~~L~~L~Ls~N~-l~~lp~~-~~~---~~l~~L~~L~Ls~N-~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l-~-~  447 (636)
T 4eco_A          376 TEQVENLSFAHNK-LKYIPNI-FDA---KSVSVMSAIDFSYN-EIGSVDGKNFDPLDPTPFKGINVSSINLSNNQI-S-K  447 (636)
T ss_dssp             CTTCCEEECCSSC-CSSCCSC-CCT---TCSSCEEEEECCSS-CTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCC-C-S
T ss_pred             cccCcEEEccCCc-Ccccchh-hhh---cccCccCEEECcCC-cCCCcchhhhcccccccccCCCCCEEECcCCcc-C-c
Confidence            55 6666666552 3322211 110   11346666666666 33334554333          34444 443321 1 2


Q ss_pred             CCC-----CccccEEEecCCCcceecCCCC--C-------CCccEEEEeccEeeeecCCCCccCCCCCCcCCC-----CC
Q 048322          320 LSS-----YPRLCRLEVDECKELVCRTPID--S-------KLIKFMTISNSSLDMIGCKGMLYDSQAGSSLPK-----PM  380 (498)
Q Consensus       320 ~~~-----l~~L~~L~l~~~~~~~~~~~~~--~-------~~L~~L~l~~~~l~~~~~~~l~~~~~~l~~lp~-----~l  380 (498)
                      +|.     +++|++|++++|....++....  .       ++|+.|++++|               .+..+|.     .+
T Consensus       448 lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N---------------~l~~lp~~~~~~~l  512 (636)
T 4eco_A          448 FPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFN---------------KLTKLSDDFRATTL  512 (636)
T ss_dssp             CCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSS---------------CCCBCCGGGSTTTC
T ss_pred             CCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCC---------------cCCccChhhhhccC
Confidence            332     5566666666665544332211  1       15666666655               3444543     45


Q ss_pred             CCCCeEEecCCCC-------CCCCCccEEEEcCCCCCCCccccCCCCccCCCCCCcCeEeeecCCCCCcCCCCCcccccc
Q 048322          381 TTTNVLEFGKLLE-------PGFQILETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPNLTLFPEVGLPSSLL  453 (498)
Q Consensus       381 ~~L~~L~i~~~~~-------~~lp~L~~L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~sL~  453 (498)
                      ++|+.|++++|.+       ..+++|+.|+++++..+..-.-...+|.++..+++|++|++++| .++.+|.. +.++|+
T Consensus       513 ~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~ip~~-~~~~L~  590 (636)
T 4eco_A          513 PYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN-DIRKVNEK-ITPNIS  590 (636)
T ss_dssp             TTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS-CCCBCCSC-CCTTCC
T ss_pred             CCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCC-cCCccCHh-HhCcCC
Confidence            7899999999933       34567999999765422110001234888999999999999997 55999875 448999


Q ss_pred             ceeeccCch
Q 048322          454 DLYVNNCPR  462 (498)
Q Consensus       454 ~L~i~~c~~  462 (498)
                      .|++++|+-
T Consensus       591 ~L~Ls~N~l  599 (636)
T 4eco_A          591 VLDIKDNPN  599 (636)
T ss_dssp             EEECCSCTT
T ss_pred             EEECcCCCC
Confidence            999999963

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.80  E-value=1.2e-19  Score=177.78  Aligned_cols=273  Identities=15%  Similarity=0.126  Sum_probs=142.3

Q ss_pred             hcccCCcccEEEEecCCCCCCcChhhHHHhhhcCCCCCCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCC
Q 048322          137 LCEKLNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLP  216 (498)
Q Consensus       137 l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp  216 (498)
                      +..+++|++|+++.+.- ..         + ..+..+++|++|+++++....+|. +.  .+++|++|++++| .+..+|
T Consensus        62 ~~~~~~L~~L~l~~n~i-~~---------~-~~~~~l~~L~~L~L~~n~i~~~~~-~~--~l~~L~~L~l~~n-~i~~~~  126 (347)
T 4fmz_A           62 IEYLTNLEYLNLNGNQI-TD---------I-SPLSNLVKLTNLYIGTNKITDISA-LQ--NLTNLRELYLNED-NISDIS  126 (347)
T ss_dssp             GGGCTTCCEEECCSSCC-CC---------C-GGGTTCTTCCEEECCSSCCCCCGG-GT--TCTTCSEEECTTS-CCCCCG
T ss_pred             hhhcCCccEEEccCCcc-cc---------c-hhhhcCCcCCEEEccCCcccCchH-Hc--CCCcCCEEECcCC-cccCch
Confidence            45567777777766531 10         0 114455777777777776666543 33  4677777777765 455666


Q ss_pred             CCCCccccceeeccccccceecCccccCCCCCCCCCCCceeeccCCCccccccccccCCccccCCCccceeeeccCCCcc
Q 048322          217 SLGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLS  296 (498)
Q Consensus       217 ~i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~  296 (498)
                      +++.+++|++|++++|..+..++. +      ..+++|++|++.++. +.....       +..+++|++|++++| .+.
T Consensus       127 ~~~~l~~L~~L~l~~n~~~~~~~~-~------~~l~~L~~L~l~~~~-~~~~~~-------~~~l~~L~~L~l~~n-~l~  190 (347)
T 4fmz_A          127 PLANLTKMYSLNLGANHNLSDLSP-L------SNMTGLNYLTVTESK-VKDVTP-------IANLTDLYSLSLNYN-QIE  190 (347)
T ss_dssp             GGTTCTTCCEEECTTCTTCCCCGG-G------TTCTTCCEEECCSSC-CCCCGG-------GGGCTTCSEEECTTS-CCC
T ss_pred             hhccCCceeEEECCCCCCcccccc-h------hhCCCCcEEEecCCC-cCCchh-------hccCCCCCEEEccCC-ccc
Confidence            677777777777777655554433 1      246777777776652 222221       222677777777776 332


Q ss_pred             ccCCC--CcchHHHH-HHhccccc-ccCCCCccccEEEecCCCcceecCCCCCCCccEEEEeccEeeeecCCCCccCCCC
Q 048322          297 GKLPE--LLPSLEIL-VSKCEKLV-VSLSSYPRLCRLEVDECKELVCRTPIDSKLIKFMTISNSSLDMIGCKGMLYDSQA  372 (498)
Q Consensus       297 ~~lp~--~l~~L~~L-i~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~  372 (498)
                       .++.  .+++|+.| +.++.-.. ..+..+++|++|++++|.....+....+++|++|++++|.+..            
T Consensus       191 -~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~------------  257 (347)
T 4fmz_A          191 -DISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISD------------  257 (347)
T ss_dssp             -CCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC------------
T ss_pred             -ccccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCC------------
Confidence             3332  12222222 33221110 0122355666666666655444444445666666665542211            


Q ss_pred             CCcCCCCCCCCCeEEecCC------CCCCCCCccEEEEcCCCCCCCccccCCCCccCCCCCCcCeEeeecCCCCCcCCCC
Q 048322          373 GSSLPKPMTTTNVLEFGKL------LEPGFQILETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPNLTLFPEV  446 (498)
Q Consensus       373 l~~lp~~l~~L~~L~i~~~------~~~~lp~L~~L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~~l~~lp~~  446 (498)
                      +..+ ..+++|+.|++++|      .+..+++|+.|++++|. ++..     .|..+..+++|++|++++|+ ++.++..
T Consensus       258 ~~~~-~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~-l~~~-----~~~~l~~l~~L~~L~L~~n~-l~~~~~~  329 (347)
T 4fmz_A          258 INAV-KDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQ-LGNE-----DMEVIGGLTNLTTLFLSQNH-ITDIRPL  329 (347)
T ss_dssp             CGGG-TTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSC-CCGG-----GHHHHHTCTTCSEEECCSSS-CCCCGGG
T ss_pred             ChhH-hcCCCcCEEEccCCccCCChhhcCCCCCCEEECcCCc-CCCc-----ChhHhhccccCCEEEccCCc-cccccCh
Confidence            0001 23356666666666      12344556666666653 2211     13445566666666666654 4444333


Q ss_pred             CccccccceeeccCc
Q 048322          447 GLPSSLLDLYVNNCP  461 (498)
Q Consensus       447 ~~~~sL~~L~i~~c~  461 (498)
                      ...++|++|++++|+
T Consensus       330 ~~l~~L~~L~l~~N~  344 (347)
T 4fmz_A          330 ASLSKMDSADFANQV  344 (347)
T ss_dssp             GGCTTCSEESSSCC-
T ss_pred             hhhhccceeehhhhc
Confidence            334566666666654

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.79  E-value=4.8e-19  Score=191.37  Aligned_cols=255  Identities=13%  Similarity=0.092  Sum_probs=145.5

Q ss_pred             CCCCceEEEeecCCCCCCc--cccCCCCCCccEEeEeCCCCCCCCCCCCCccccceeeccccccceecCccccCCCCCCC
Q 048322          173 HKCIKKVAIRNYGGARFPL--WIGDPLFSKIEFLELENCNNCVSLPSLGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMP  250 (498)
Q Consensus       173 ~~~L~~L~l~~~~~~~~p~--~~~~~~l~~L~~L~l~~c~~~~~lp~i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~  250 (498)
                      +++|++|+++++....+|.  ++.  .+++|+.|++++|. +..+|.++.+++|+.|+++++. +..+|..+..      
T Consensus       547 l~~L~~L~Ls~N~L~~ip~~~~l~--~L~~L~~L~Ls~N~-l~~lp~~~~L~~L~~L~Ls~N~-l~~lp~~l~~------  616 (876)
T 4ecn_A          547 GPKIQIFYMGYNNLEEFPASASLQ--KMVKLGLLDCVHNK-VRHLEAFGTNVKLTDLKLDYNQ-IEEIPEDFCA------  616 (876)
T ss_dssp             TTTCCEEECCSSCCCBCCCHHHHT--TCTTCCEEECTTSC-CCBCCCCCTTSEESEEECCSSC-CSCCCTTSCE------
T ss_pred             cCCccEEEeeCCcCCccCChhhhh--cCCCCCEEECCCCC-cccchhhcCCCcceEEECcCCc-cccchHHHhh------
Confidence            3466666666666666665  555  46666666666643 3366666666666666666643 4455544332      


Q ss_pred             CCC-CceeeccCCCccccccccccCCccccCCCccceeeeccCCCccccCCCC--------cchHHHH-HHhcccccccC
Q 048322          251 FPS-LKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPEL--------LPSLEIL-VSKCEKLVVSL  320 (498)
Q Consensus       251 ~~~-L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~--------l~~L~~L-i~~~~~l~~~~  320 (498)
                      +++ |+.|+++++. +..++ .....   ...++|+.|++++| .+.+.+|..        .++|+.| +..|.- . .+
T Consensus       617 l~~~L~~L~Ls~N~-L~~lp-~~~~~---~~~~~L~~L~Ls~N-~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L-~-~l  688 (876)
T 4ecn_A          617 FTDQVEGLGFSHNK-LKYIP-NIFNA---KSVYVMGSVDFSYN-KIGSEGRNISCSMDDYKGINASTVTLSYNEI-Q-KF  688 (876)
T ss_dssp             ECTTCCEEECCSSC-CCSCC-SCCCT---TCSSCEEEEECCSS-CTTTTSSSCSSCTTTCCCCCEEEEECCSSCC-C-SC
T ss_pred             ccccCCEEECcCCC-CCcCc-hhhhc---cccCCCCEEECcCC-cCCCccccchhhhccccCCCcCEEEccCCcC-C-cc
Confidence            555 6666666552 33322 11111   01234666666665 233333321        1234444 443322 1 23


Q ss_pred             CC-----CccccEEEecCCCcceecCCCC---------CCCccEEEEeccEeeeecCCCCccCCCCCCcCCC-----CCC
Q 048322          321 SS-----YPRLCRLEVDECKELVCRTPID---------SKLIKFMTISNSSLDMIGCKGMLYDSQAGSSLPK-----PMT  381 (498)
Q Consensus       321 ~~-----l~~L~~L~l~~~~~~~~~~~~~---------~~~L~~L~l~~~~l~~~~~~~l~~~~~~l~~lp~-----~l~  381 (498)
                      |.     +++|+.|++++|....++....         +++|+.|++++|               .+..+|.     .++
T Consensus       689 p~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N---------------~L~~lp~~l~~~~l~  753 (876)
T 4ecn_A          689 PTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFN---------------KLTSLSDDFRATTLP  753 (876)
T ss_dssp             CHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSS---------------CCCCCCGGGSTTTCT
T ss_pred             CHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCC---------------CCccchHHhhhccCC
Confidence            32     4566666666665444332111         115666666655               3334442     458


Q ss_pred             CCCeEEecCCC-------CCCCCCccEEEEcCCCCCCCccccCCCCccCCCCCCcCeEeeecCCCCCcCCCCCccccccc
Q 048322          382 TTNVLEFGKLL-------EPGFQILETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPNLTLFPEVGLPSSLLD  454 (498)
Q Consensus       382 ~L~~L~i~~~~-------~~~lp~L~~L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~sL~~  454 (498)
                      +|+.|++++|.       +..+++|+.|++++++.+..-.-...+|.++..+++|++|++++| .++.+|.. +.++|+.
T Consensus       754 ~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N-~L~~Ip~~-l~~~L~~  831 (876)
T 4ecn_A          754 YLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSN-DIRKVDEK-LTPQLYI  831 (876)
T ss_dssp             TCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS-CCCBCCSC-CCSSSCE
T ss_pred             CcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCC-CCCccCHh-hcCCCCE
Confidence            89999999983       335567999999875432210101234888999999999999997 45999986 4579999


Q ss_pred             eeeccCch
Q 048322          455 LYVNNCPR  462 (498)
Q Consensus       455 L~i~~c~~  462 (498)
                      |++++|+-
T Consensus       832 LdLs~N~l  839 (876)
T 4ecn_A          832 LDIADNPN  839 (876)
T ss_dssp             EECCSCTT
T ss_pred             EECCCCCC
Confidence            99999973

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.79  E-value=7.3e-19  Score=175.07  Aligned_cols=276  Identities=17%  Similarity=0.107  Sum_probs=165.6

Q ss_pred             hhcccCCcccEEEEecCCCCCCcChhhHHHhhhcCCCCCCCceEEEeecCCCCCCc-cccCCCCCCccEEeEeCCCCCCC
Q 048322          136 ALCEKLNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPL-WIGDPLFSKIEFLELENCNNCVS  214 (498)
Q Consensus       136 ~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~-~~~~~~l~~L~~L~l~~c~~~~~  214 (498)
                      .+.++++|+.|+++.+.-.         ......+..+++|++|+++++....+|. .+.  .+++|++|++++| .++.
T Consensus        64 ~~~~l~~L~~L~L~~n~i~---------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n-~l~~  131 (390)
T 3o6n_A           64 LLDSFRQVELLNLNDLQIE---------EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQ--NVPLLTVLVLERN-DLSS  131 (390)
T ss_dssp             HHHHCCCCSEEECTTSCCC---------EECTTTTTTCTTCCEEECCSSCCCCCCTTTTT--TCTTCCEEECCSS-CCCC
T ss_pred             HhcccccCcEEECCCCccc---------ccChhhccCCCCcCEEECCCCCCCcCCHHHhc--CCCCCCEEECCCC-ccCc
Confidence            3455667777777554310         0011234455677777777776655543 344  4677777777765 4556


Q ss_pred             CCC--CCCccccceeeccccccceecCccccCCCCCCCCCCCceeeccCCCccccccccccCCccccCCCccceeeeccC
Q 048322          215 LPS--LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKC  292 (498)
Q Consensus       215 lp~--i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c  292 (498)
                      +|.  ++.+++|++|+++++ .+..++...++     .+++|++|+++++ .++.+.        +..+++|+.|+++++
T Consensus       132 l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~-----~l~~L~~L~l~~n-~l~~~~--------~~~l~~L~~L~l~~n  196 (390)
T 3o6n_A          132 LPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQ-----ATTSLQNLQLSSN-RLTHVD--------LSLIPSLFHANVSYN  196 (390)
T ss_dssp             CCTTTTTTCTTCCEEECCSS-CCCBCCTTTTS-----SCTTCCEEECCSS-CCSBCC--------GGGCTTCSEEECCSS
T ss_pred             CCHHHhcCCCCCcEEECCCC-ccCccChhhcc-----CCCCCCEEECCCC-cCCccc--------cccccccceeecccc
Confidence            665  466777777777764 35555443222     4667777777655 233221        112666777776665


Q ss_pred             CCccccCCCCcchHHHH-HHhcccccccCCCCccccEEEecCCCcceecCCCCCCCccEEEEeccEeeeecCCCCccCCC
Q 048322          293 PKLSGKLPELLPSLEIL-VSKCEKLVVSLSSYPRLCRLEVDECKELVCRTPIDSKLIKFMTISNSSLDMIGCKGMLYDSQ  371 (498)
Q Consensus       293 ~~l~~~lp~~l~~L~~L-i~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~  371 (498)
                       .+. .++. .++|+.| +.++.--....+..++|+.|++++|.....+....+++|+.|++++|.+......       
T Consensus       197 -~l~-~~~~-~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~-------  266 (390)
T 3o6n_A          197 -LLS-TLAI-PIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYH-------  266 (390)
T ss_dssp             -CCS-EEEC-CSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESG-------
T ss_pred             -ccc-ccCC-CCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChh-------
Confidence             232 2211 2344444 4443321111122567777777777666555555677888888877633321100       


Q ss_pred             CCCcCCCCCCCCCeEEecCC-------CCCCCCCccEEEEcCCCCCCCccccCCCCccCCCCCCcCeEeeecCCCCCcCC
Q 048322          372 AGSSLPKPMTTTNVLEFGKL-------LEPGFQILETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPNLTLFP  444 (498)
Q Consensus       372 ~l~~lp~~l~~L~~L~i~~~-------~~~~lp~L~~L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~~l~~lp  444 (498)
                         .+ ..+++|+.|++++|       ....+|+|+.|++++| .++.+      |..+..+++|++|++++| .++.+|
T Consensus       267 ---~~-~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n-~l~~~------~~~~~~l~~L~~L~L~~N-~i~~~~  334 (390)
T 3o6n_A          267 ---PF-VKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHN-HLLHV------ERNQPQFDRLENLYLDHN-SIVTLK  334 (390)
T ss_dssp             ---GG-TTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSS-CCCCC------GGGHHHHTTCSEEECCSS-CCCCCC
T ss_pred             ---Hc-cccccCCEEECCCCcCcccCcccCCCCCCCEEECCCC-cceec------CccccccCcCCEEECCCC-ccceeC
Confidence               00 23478999999998       3456888999999986 45433      777788999999999996 577776


Q ss_pred             CCCccccccceeeccCc
Q 048322          445 EVGLPSSLLDLYVNNCP  461 (498)
Q Consensus       445 ~~~~~~sL~~L~i~~c~  461 (498)
                      . ...++|+.|++++++
T Consensus       335 ~-~~~~~L~~L~l~~N~  350 (390)
T 3o6n_A          335 L-STHHTLKNLTLSHND  350 (390)
T ss_dssp             C-CTTCCCSEEECCSSC
T ss_pred             c-hhhccCCEEEcCCCC
Confidence            4 345789999999876

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.78  E-value=5e-18  Score=173.72  Aligned_cols=252  Identities=17%  Similarity=0.183  Sum_probs=140.1

Q ss_pred             CCCCCCceEEEeecCCCCC-CccccCCCCCCccEEeEeCCCCCCCCCC--CCCccccceeeccccccceecCccccCCCC
Q 048322          171 QPHKCIKKVAIRNYGGARF-PLWIGDPLFSKIEFLELENCNNCVSLPS--LGLLSSLKHLAVKGLKKLKSIESEVYGEGF  247 (498)
Q Consensus       171 ~~~~~L~~L~l~~~~~~~~-p~~~~~~~l~~L~~L~l~~c~~~~~lp~--i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~  247 (498)
                      ..+++|++|+++++....+ |..+.  .+++|++|+|++| .+..+|.  ++.+++|++|+++++. +..++...+.   
T Consensus        53 ~~l~~L~~L~L~~n~i~~~~~~~~~--~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~---  125 (477)
T 2id5_A           53 ASFPHLEELELNENIVSAVEPGAFN--NLFNLRTLGLRSN-RLKLIPLGVFTGLSNLTKLDISENK-IVILLDYMFQ---  125 (477)
T ss_dssp             TTCTTCCEEECTTSCCCEECTTTTT--TCTTCCEEECCSS-CCCSCCTTSSTTCTTCCEEECTTSC-CCEECTTTTT---
T ss_pred             cCCCCCCEEECCCCccCEeChhhhh--CCccCCEEECCCC-cCCccCcccccCCCCCCEEECCCCc-cccCChhHcc---
Confidence            3445555555555544433 33333  3555555555553 3444443  4555555555555532 3333322221   


Q ss_pred             CCCCCCCceeeccCCCccccccccccCCccccCCCccceeeeccCCCccccCCC----CcchHHHH-HHhcccc---ccc
Q 048322          248 SMPFPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPE----LLPSLEIL-VSKCEKL---VVS  319 (498)
Q Consensus       248 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~----~l~~L~~L-i~~~~~l---~~~  319 (498)
                        .+++|+.|+++++ .+..+.+....     .+++|++|++++| .++ .+|.    .+++|+.| +.++.--   ...
T Consensus       126 --~l~~L~~L~l~~n-~l~~~~~~~~~-----~l~~L~~L~l~~n-~l~-~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~  195 (477)
T 2id5_A          126 --DLYNLKSLEVGDN-DLVYISHRAFS-----GLNSLEQLTLEKC-NLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYS  195 (477)
T ss_dssp             --TCTTCCEEEECCT-TCCEECTTSST-----TCTTCCEEEEESC-CCS-SCCHHHHTTCTTCCEEEEESCCCCEECTTC
T ss_pred             --ccccCCEEECCCC-ccceeChhhcc-----CCCCCCEEECCCC-cCc-ccChhHhcccCCCcEEeCCCCcCcEeChhh
Confidence              3555555555543 22222211111     1555555555555 232 2221    12223333 3222110   013


Q ss_pred             CCCCccccEEEecCCCccee--cCCCCCCCccEEEEeccEeeeecCCCCccCCCCCCcCC----CCCCCCCeEEecCC--
Q 048322          320 LSSYPRLCRLEVDECKELVC--RTPIDSKLIKFMTISNSSLDMIGCKGMLYDSQAGSSLP----KPMTTTNVLEFGKL--  391 (498)
Q Consensus       320 ~~~l~~L~~L~l~~~~~~~~--~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~l~~lp----~~l~~L~~L~i~~~--  391 (498)
                      +..+++|++|++++|.....  +......+|+.|++++|               .+..+|    ..+++|+.|++++|  
T Consensus       196 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n---------------~l~~~~~~~~~~l~~L~~L~Ls~n~l  260 (477)
T 2id5_A          196 FKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC---------------NLTAVPYLAVRHLVYLRFLNLSYNPI  260 (477)
T ss_dssp             SCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESS---------------CCCSCCHHHHTTCTTCCEEECCSSCC
T ss_pred             cccCcccceeeCCCCccccccCcccccCccccEEECcCC---------------cccccCHHHhcCccccCeeECCCCcC
Confidence            45578888888888765542  22333558888888876               344444    34578999999988  


Q ss_pred             ------CCCCCCCccEEEEcCCCCCCCccccCCCCccCCCCCCcCeEeeecCCCCCcCCCC--CccccccceeeccCc
Q 048322          392 ------LEPGFQILETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPNLTLFPEV--GLPSSLLDLYVNNCP  461 (498)
Q Consensus       392 ------~~~~lp~L~~L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~~l~~lp~~--~~~~sL~~L~i~~c~  461 (498)
                            .+..+++|+.|+++++. ++.+     .|..+..+++|++|++++| .++.+|..  ...++|+.|+++++|
T Consensus       261 ~~~~~~~~~~l~~L~~L~L~~n~-l~~~-----~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~  331 (477)
T 2id5_A          261 STIEGSMLHELLRLQEIQLVGGQ-LAVV-----EPYAFRGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETLILDSNP  331 (477)
T ss_dssp             CEECTTSCTTCTTCCEEECCSSC-CSEE-----CTTTBTTCTTCCEEECCSS-CCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred             CccChhhccccccCCEEECCCCc-cceE-----CHHHhcCcccCCEEECCCC-cCceeCHhHcCCCcccCEEEccCCC
Confidence                  35667889999998853 4332     1667888899999999986 77777764  234789999988765

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.78  E-value=3.2e-18  Score=166.02  Aligned_cols=126  Identities=19%  Similarity=0.268  Sum_probs=85.0

Q ss_pred             CCccceeeeccCCCccccCCCCcchHHHHHHhcccccccCCCCccccEEEecCCCcceecC-CCCCCCccEEEEeccEee
Q 048322          281 FPRLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSYPRLCRLEVDECKELVCRT-PIDSKLIKFMTISNSSLD  359 (498)
Q Consensus       281 l~~L~~L~l~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~l~  359 (498)
                      +++|++|++++| .++ .+|.                 .+..+++|++|++++|....++. ...+++|+.|++++|   
T Consensus       182 l~~L~~L~L~~n-~l~-~lp~-----------------~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n---  239 (328)
T 4fcg_A          182 LVNLQSLRLEWT-GIR-SLPA-----------------SIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGC---  239 (328)
T ss_dssp             STTCCEEEEEEE-CCC-CCCG-----------------GGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTC---
T ss_pred             CCCCCEEECcCC-CcC-cchH-----------------hhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCC---
Confidence            778888888877 454 5554                 34456778888888776555332 233566666666543   


Q ss_pred             eecCCCCccCCCCCCcCCCCCCCCCeEEecCCCCCCCCCccEEEEcCCCCCCCccccCCCCccCCCCCCcCeEeeecCCC
Q 048322          360 MIGCKGMLYDSQAGSSLPKPMTTTNVLEFGKLLEPGFQILETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPN  439 (498)
Q Consensus       360 ~~~~~~l~~~~~~l~~lp~~l~~L~~L~i~~~~~~~lp~L~~L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~~  439 (498)
                                 .....+|.             .++.+++|+.|++++|+.+..+      |..+..+++|++|++++|+.
T Consensus       240 -----------~~~~~~p~-------------~~~~l~~L~~L~L~~n~~~~~~------p~~~~~l~~L~~L~L~~n~~  289 (328)
T 4fcg_A          240 -----------TALRNYPP-------------IFGGRAPLKRLILKDCSNLLTL------PLDIHRLTQLEKLDLRGCVN  289 (328)
T ss_dssp             -----------TTCCBCCC-------------CTTCCCCCCEEECTTCTTCCBC------CTTGGGCTTCCEEECTTCTT
T ss_pred             -----------cchhhhHH-------------HhcCCCCCCEEECCCCCchhhc------chhhhcCCCCCEEeCCCCCc
Confidence                       11222222             2356777888888888776543      88888999999999999999


Q ss_pred             CCcCCCC-Cccccccceeec
Q 048322          440 LTLFPEV-GLPSSLLDLYVN  458 (498)
Q Consensus       440 l~~lp~~-~~~~sL~~L~i~  458 (498)
                      ++.+|.. +.+++|+.+.+.
T Consensus       290 ~~~iP~~l~~L~~L~~l~l~  309 (328)
T 4fcg_A          290 LSRLPSLIAQLPANCIILVP  309 (328)
T ss_dssp             CCCCCGGGGGSCTTCEEECC
T ss_pred             hhhccHHHhhccCceEEeCC
Confidence            9999875 444666666665

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.78  E-value=7.1e-19  Score=184.92  Aligned_cols=277  Identities=18%  Similarity=0.121  Sum_probs=180.2

Q ss_pred             HhhcccCCcccEEEEecCCCCCCcChhhHHHhhhcCCCCCCCceEEEeecCCCCCCcc-ccCCCCCCccEEeEeCCCCCC
Q 048322          135 AALCEKLNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPLW-IGDPLFSKIEFLELENCNNCV  213 (498)
Q Consensus       135 ~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~-~~~~~l~~L~~L~l~~c~~~~  213 (498)
                      ..+.++++|+.|+|+.+.-.         ......+..+++|++|+++++....+|.. ++  .+++|++|+|++| .+.
T Consensus        69 ~~~~~l~~L~~L~L~~n~l~---------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n-~l~  136 (597)
T 3oja_B           69 ALLDSFRQVELLNLNDLQIE---------EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQ--NVPLLTVLVLERN-DLS  136 (597)
T ss_dssp             HHHHHCCCCSEEECTTSCCC---------EECTTTTTTCTTCCEEECCSSCCCCCCTTTTT--TCTTCCEEECCSS-CCC
T ss_pred             HHHccCCCCcEEECCCCCCC---------CCChHHhcCCCCCCEEECCCCcCCCCCHHHHc--CCCCCCEEEeeCC-CCC
Confidence            34556778888888665410         00122445567888888888877666543 34  5788888888876 566


Q ss_pred             CCCC--CCCccccceeeccccccceecCccccCCCCCCCCCCCceeeccCCCccccccccccCCccccCCCccceeeecc
Q 048322          214 SLPS--LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVK  291 (498)
Q Consensus       214 ~lp~--i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~  291 (498)
                      .+|+  ++.+++|++|++++| .+..++...++     .+++|++|+++++ .+..+.        +..+++|+.|++++
T Consensus       137 ~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~-----~l~~L~~L~L~~N-~l~~~~--------~~~l~~L~~L~l~~  201 (597)
T 3oja_B          137 SLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQ-----ATTSLQNLQLSSN-RLTHVD--------LSLIPSLFHANVSY  201 (597)
T ss_dssp             CCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTT-----TCTTCCEEECTTS-CCSBCC--------GGGCTTCSEEECCS
T ss_pred             CCCHHHhccCCCCCEEEeeCC-cCCCCChhhhh-----cCCcCcEEECcCC-CCCCcC--------hhhhhhhhhhhccc
Confidence            6765  577888888888875 45555554332     4778888888766 333332        12277778887777


Q ss_pred             CCCccccCCCCcchHHHH-HHhcccccccCCCCccccEEEecCCCcceecCCCCCCCccEEEEeccEeeeecCCCCccCC
Q 048322          292 CPKLSGKLPELLPSLEIL-VSKCEKLVVSLSSYPRLCRLEVDECKELVCRTPIDSKLIKFMTISNSSLDMIGCKGMLYDS  370 (498)
Q Consensus       292 c~~l~~~lp~~l~~L~~L-i~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~  370 (498)
                      | .+. .++ ..++|+.| +.++.--....+..++|+.|++++|.....+....+++|+.|++++|.+......      
T Consensus       202 n-~l~-~l~-~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~------  272 (597)
T 3oja_B          202 N-LLS-TLA-IPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYH------  272 (597)
T ss_dssp             S-CCS-EEE-CCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESG------
T ss_pred             C-ccc-ccc-CCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHH------
Confidence            6 332 222 12345555 5444321111112467888888888766665566688888888887744322110      


Q ss_pred             CCCCcCCCCCCCCCeEEecCC-------CCCCCCCccEEEEcCCCCCCCccccCCCCccCCCCCCcCeEeeecCCCCCcC
Q 048322          371 QAGSSLPKPMTTTNVLEFGKL-------LEPGFQILETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPNLTLF  443 (498)
Q Consensus       371 ~~l~~lp~~l~~L~~L~i~~~-------~~~~lp~L~~L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l  443 (498)
                          .+ ..+++|+.|++++|       ....+|+|+.|++++|. ++.      +|.++..+++|++|++++| .+..+
T Consensus       273 ----~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~-l~~------i~~~~~~l~~L~~L~L~~N-~l~~~  339 (597)
T 3oja_B          273 ----PF-VKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNH-LLH------VERNQPQFDRLENLYLDHN-SIVTL  339 (597)
T ss_dssp             ----GG-TTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSC-CCC------CGGGHHHHTTCSEEECCSS-CCCCC
T ss_pred             ----Hh-cCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCC-CCc------cCcccccCCCCCEEECCCC-CCCCc
Confidence                01 24488999999998       34568899999999864 443      3888888999999999996 56777


Q ss_pred             CCCCccccccceeeccCc
Q 048322          444 PEVGLPSSLLDLYVNNCP  461 (498)
Q Consensus       444 p~~~~~~sL~~L~i~~c~  461 (498)
                      |.. ..++|+.|+++++|
T Consensus       340 ~~~-~~~~L~~L~l~~N~  356 (597)
T 3oja_B          340 KLS-THHTLKNLTLSHND  356 (597)
T ss_dssp             CCC-TTCCCSEEECCSSC
T ss_pred             Chh-hcCCCCEEEeeCCC
Confidence            643 45799999999876

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.77  E-value=2.1e-18  Score=181.33  Aligned_cols=296  Identities=16%  Similarity=0.129  Sum_probs=204.8

Q ss_pred             ccCCcccEEEEecCCCCCCcChhhHHHhhhcCCCCCCCceEEEeecCCCCCCc-cccCCCCCCccEEeEeCCCCCCCCCC
Q 048322          139 EKLNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPL-WIGDPLFSKIEFLELENCNNCVSLPS  217 (498)
Q Consensus       139 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~-~~~~~~l~~L~~L~l~~c~~~~~lp~  217 (498)
                      ...+++.|++..+.-      ......++   ..+++|++|+++++....+|. .+.  .+++|++|+|++|. +..+|+
T Consensus        49 ~l~~l~~l~l~~~~l------~~lp~~~~---~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~-l~~~~~  116 (597)
T 3oja_B           49 TLNNQKIVTFKNSTM------RKLPAALL---DSFRQVELLNLNDLQIEEIDTYAFA--YAHTIQKLYMGFNA-IRYLPP  116 (597)
T ss_dssp             GGCCCSEEEESSCEE------SEECTHHH---HHCCCCSEEECTTSCCCEECTTTTT--TCTTCCEEECCSSC-CCCCCT
T ss_pred             cCCCceEEEeeCCCC------CCcCHHHH---ccCCCCcEEECCCCCCCCCChHHhc--CCCCCCEEECCCCc-CCCCCH
Confidence            356788888865531      11111122   235899999999998777664 555  68999999999974 666665


Q ss_pred             --CCCccccceeeccccccceecCccccCCCCCCCCCCCceeeccCCCccccccccccCCccccCCCccceeeeccCCCc
Q 048322          218 --LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKL  295 (498)
Q Consensus       218 --i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l  295 (498)
                        ++.+++|++|++++| .+..+|..+++     .+++|++|+++++ .+....+...+.     +++|++|++++| .+
T Consensus       117 ~~~~~l~~L~~L~L~~n-~l~~l~~~~~~-----~l~~L~~L~Ls~N-~l~~~~~~~~~~-----l~~L~~L~L~~N-~l  183 (597)
T 3oja_B          117 HVFQNVPLLTVLVLERN-DLSSLPRGIFH-----NTPKLTTLSMSNN-NLERIEDDTFQA-----TTSLQNLQLSSN-RL  183 (597)
T ss_dssp             TTTTTCTTCCEEECCSS-CCCCCCTTTTT-----TCTTCCEEECCSS-CCCBCCTTTTTT-----CTTCCEEECTTS-CC
T ss_pred             HHHcCCCCCCEEEeeCC-CCCCCCHHHhc-----cCCCCCEEEeeCC-cCCCCChhhhhc-----CCcCcEEECcCC-CC
Confidence              799999999999996 58888876654     5899999999987 455554433333     899999999998 45


Q ss_pred             cccCCCCcchHHHH-HHhcccccccCCCCccccEEEecCCCcceecCCCCCCCccEEEEeccEeeeecCCCCccCCCCCC
Q 048322          296 SGKLPELLPSLEIL-VSKCEKLVVSLSSYPRLCRLEVDECKELVCRTPIDSKLIKFMTISNSSLDMIGCKGMLYDSQAGS  374 (498)
Q Consensus       296 ~~~lp~~l~~L~~L-i~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~l~  374 (498)
                      ++.-+..+++|+.| +.++. +. .++..++|+.|++++|....++... +++|+.|++++|.+...            .
T Consensus       184 ~~~~~~~l~~L~~L~l~~n~-l~-~l~~~~~L~~L~ls~n~l~~~~~~~-~~~L~~L~L~~n~l~~~------------~  248 (597)
T 3oja_B          184 THVDLSLIPSLFHANVSYNL-LS-TLAIPIAVEELDASHNSINVVRGPV-NVELTILKLQHNNLTDT------------A  248 (597)
T ss_dssp             SBCCGGGCTTCSEEECCSSC-CS-EEECCTTCSEEECCSSCCCEEECSC-CSCCCEEECCSSCCCCC------------G
T ss_pred             CCcChhhhhhhhhhhcccCc-cc-cccCCchhheeeccCCccccccccc-CCCCCEEECCCCCCCCC------------h
Confidence            42222445666666 55442 22 3444678889999888776655433 47899999988743221            0


Q ss_pred             cCCCCCCCCCeEEecCC--------CCCCCCCccEEEEcCCCCCCCccccCCCCccCCCCCCcCeEeeecCCCCCcCCCC
Q 048322          375 SLPKPMTTTNVLEFGKL--------LEPGFQILETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPNLTLFPEV  446 (498)
Q Consensus       375 ~lp~~l~~L~~L~i~~~--------~~~~lp~L~~L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~~l~~lp~~  446 (498)
                      .+ ..+++|+.|++++|        .++.+++|+.|+++++ .++.+      |..+..+++|++|++++| .+..+|..
T Consensus       249 ~l-~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l------~~~~~~l~~L~~L~Ls~N-~l~~i~~~  319 (597)
T 3oja_B          249 WL-LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVAL------NLYGQPIPTLKVLDLSHN-HLLHVERN  319 (597)
T ss_dssp             GG-GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTS-CCCEE------ECSSSCCTTCCEEECCSS-CCCCCGGG
T ss_pred             hh-ccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCC-CCCCC------CcccccCCCCcEEECCCC-CCCccCcc
Confidence            11 34488999999999        3567888999999985 45443      777788999999999997 66678764


Q ss_pred             -CccccccceeeccCchhHhhhccCCCCCCCCcCCCCeEEECceEe
Q 048322          447 -GLPSSLLDLYVNNCPRLKKVCKRDQGKEWPKIAHIPWVVIDGKFI  491 (498)
Q Consensus       447 -~~~~sL~~L~i~~c~~l~~~~~~~~~~~~~~i~hi~~~~~~~~~~  491 (498)
                       +.+++|+.|++++|+--.        .+......+..+.+.+..+
T Consensus       320 ~~~l~~L~~L~L~~N~l~~--------~~~~~~~~L~~L~l~~N~~  357 (597)
T 3oja_B          320 QPQFDRLENLYLDHNSIVT--------LKLSTHHTLKNLTLSHNDW  357 (597)
T ss_dssp             HHHHTTCSEEECCSSCCCC--------CCCCTTCCCSEEECCSSCE
T ss_pred             cccCCCCCEEECCCCCCCC--------cChhhcCCCCEEEeeCCCC
Confidence             345899999999986311        1223344566666665444

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.77  E-value=8.1e-19  Score=189.89  Aligned_cols=297  Identities=18%  Similarity=0.119  Sum_probs=169.1

Q ss_pred             cccCCcccEEEEecCCCCCCcChhhHHHhhhcCCCCCCCceEEEeecCCC-CCCccccCCCCCCccEEeEeCCCCCCCCC
Q 048322          138 CEKLNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGA-RFPLWIGDPLFSKIEFLELENCNNCVSLP  216 (498)
Q Consensus       138 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~-~~p~~~~~~~l~~L~~L~l~~c~~~~~lp  216 (498)
                      ..+.+|++|+++++.-..          .+..+..+++|++|+++++... .+|.++.  .+++|++|++++|.....+|
T Consensus       197 ~~l~~L~~L~Ls~n~l~~----------~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~--~l~~L~~L~Ls~n~l~~~~~  264 (768)
T 3rgz_A          197 SRCVNLEFLDVSSNNFST----------GIPFLGDCSALQHLDISGNKLSGDFSRAIS--TCTELKLLNISSNQFVGPIP  264 (768)
T ss_dssp             TTCTTCCEEECCSSCCCS----------CCCBCTTCCSCCEEECCSSCCCSCHHHHTT--TCSSCCEEECCSSCCEESCC
T ss_pred             ccCCcCCEEECcCCcCCC----------CCcccccCCCCCEEECcCCcCCCcccHHHh--cCCCCCEEECCCCcccCccC
Confidence            467888888888775211          1122556678888888877755 3456665  57777777777765444444


Q ss_pred             CCCCccccceeeccccccceecCccccCCCCCCCCCCCceeeccCCCccccccccccCC--------------------c
Q 048322          217 SLGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFENLPEWWHWDTDIKGN--------------------V  276 (498)
Q Consensus       217 ~i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~--------------------~  276 (498)
                      .. .+++|++|++++|.-...+|..+++     .+++|++|+++++ .+.+..+...+.                    .
T Consensus       265 ~~-~l~~L~~L~L~~n~l~~~ip~~~~~-----~~~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~  337 (768)
T 3rgz_A          265 PL-PLKSLQYLSLAENKFTGEIPDFLSG-----ACDTLTGLDLSGN-HFYGAVPPFFGSCSLLESLALSSNNFSGELPMD  337 (768)
T ss_dssp             CC-CCTTCCEEECCSSEEEESCCCCSCT-----TCTTCSEEECCSS-EEEECCCGGGGGCTTCCEEECCSSEEEEECCHH
T ss_pred             cc-ccCCCCEEECcCCccCCccCHHHHh-----hcCcCCEEECcCC-cCCCccchHHhcCCCccEEECCCCcccCcCCHH
Confidence            44 6666777777665433345544332     2355555555444 111111110000                    0


Q ss_pred             cccCCCccceeeeccCCCccccCCCCcchH----HHH-HHhcccccccCC----C--CccccEEEecCCCcce-ec-CCC
Q 048322          277 HVDIFPRLQELSVVKCPKLSGKLPELLPSL----EIL-VSKCEKLVVSLS----S--YPRLCRLEVDECKELV-CR-TPI  343 (498)
Q Consensus       277 ~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L----~~L-i~~~~~l~~~~~----~--l~~L~~L~l~~~~~~~-~~-~~~  343 (498)
                      .+..+++|++|++++| .+.+.+|..+..+    +.| +.+|.-. +.++    .  +++|++|++++|.... ++ ...
T Consensus       338 ~l~~l~~L~~L~Ls~n-~l~~~~p~~l~~l~~~L~~L~Ls~N~l~-~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~  415 (768)
T 3rgz_A          338 TLLKMRGLKVLDLSFN-EFSGELPESLTNLSASLLTLDLSSNNFS-GPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS  415 (768)
T ss_dssp             HHTTCTTCCEEECCSS-EEEECCCTTHHHHTTTCSEEECCSSEEE-EECCTTTTCSTTCCCCEEECCSSEEEEECCGGGG
T ss_pred             HHhcCCCCCEEeCcCC-ccCccccHHHHhhhcCCcEEEccCCCcC-CCcChhhhhcccCCccEEECCCCccccccCHHHh
Confidence            1222566666666666 3334566554333    333 4443321 1111    1  4567777777776543 22 233


Q ss_pred             CCCCccEEEEeccEeee------ecCCCCc----cCCCCCCcCCCC---CCCCCeEEecCC--------CCCCCCCccEE
Q 048322          344 DSKLIKFMTISNSSLDM------IGCKGML----YDSQAGSSLPKP---MTTTNVLEFGKL--------LEPGFQILETL  402 (498)
Q Consensus       344 ~~~~L~~L~l~~~~l~~------~~~~~l~----~~~~~l~~lp~~---l~~L~~L~i~~~--------~~~~lp~L~~L  402 (498)
                      .+++|+.|++++|.+..      ..++.+.    ..|.-...+|..   +++|+.|++++|        .++.+++|+.|
T Consensus       416 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L  495 (768)
T 3rgz_A          416 NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWI  495 (768)
T ss_dssp             GCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEE
T ss_pred             cCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEE
Confidence            46777777777775542      2223332    222221234443   377888888887        23456678888


Q ss_pred             EEcCCCCCCCccccCCCCccCCCCCCcCeEeeecCCCCCcCCCC-CccccccceeeccCc
Q 048322          403 VIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPNLTLFPEV-GLPSSLLDLYVNNCP  461 (498)
Q Consensus       403 ~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~~l~~lp~~-~~~~sL~~L~i~~c~  461 (498)
                      ++++|.-...      +|.++..+++|++|++++|.....+|.. +..++|+.|++++|+
T Consensus       496 ~L~~N~l~~~------~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~  549 (768)
T 3rgz_A          496 SLSNNRLTGE------IPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL  549 (768)
T ss_dssp             ECCSSCCCSC------CCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSE
T ss_pred             EccCCccCCc------CChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCc
Confidence            8887653322      3888888999999999988665677764 445789999998875

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.76  E-value=9.8e-19  Score=171.25  Aligned_cols=268  Identities=15%  Similarity=0.141  Sum_probs=191.0

Q ss_pred             cccCCcccEEEEecCCCCCCcChhhHHHhhhcCCCCCCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCC
Q 048322          138 CEKLNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPS  217 (498)
Q Consensus       138 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~  217 (498)
                      ..+++|+.|++..+.-..           ++.+..+++|++|+++++....+|. +.  .+++|++|++++| .+..+|.
T Consensus        41 ~~l~~L~~L~l~~~~i~~-----------~~~~~~~~~L~~L~l~~n~i~~~~~-~~--~l~~L~~L~L~~n-~i~~~~~  105 (347)
T 4fmz_A           41 EELESITKLVVAGEKVAS-----------IQGIEYLTNLEYLNLNGNQITDISP-LS--NLVKLTNLYIGTN-KITDISA  105 (347)
T ss_dssp             HHHTTCSEEECCSSCCCC-----------CTTGGGCTTCCEEECCSSCCCCCGG-GT--TCTTCCEEECCSS-CCCCCGG
T ss_pred             hhcccccEEEEeCCcccc-----------chhhhhcCCccEEEccCCccccchh-hh--cCCcCCEEEccCC-cccCchH
Confidence            356889999997664210           1234557999999999999888877 55  6899999999997 6777888


Q ss_pred             CCCccccceeeccccccceecCccccCCCCCCCCCCCceeeccCCCccccccccccCCccccCCCccceeeeccCCCccc
Q 048322          218 LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSG  297 (498)
Q Consensus       218 i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~  297 (498)
                      ++.+++|++|+++++ .+..++. +      ..+++|+.|+++++.....+..       +..+++|++|++++|. +. 
T Consensus       106 ~~~l~~L~~L~l~~n-~i~~~~~-~------~~l~~L~~L~l~~n~~~~~~~~-------~~~l~~L~~L~l~~~~-~~-  168 (347)
T 4fmz_A          106 LQNLTNLRELYLNED-NISDISP-L------ANLTKMYSLNLGANHNLSDLSP-------LSNMTGLNYLTVTESK-VK-  168 (347)
T ss_dssp             GTTCTTCSEEECTTS-CCCCCGG-G------TTCTTCCEEECTTCTTCCCCGG-------GTTCTTCCEEECCSSC-CC-
T ss_pred             HcCCCcCCEEECcCC-cccCchh-h------ccCCceeEEECCCCCCcccccc-------hhhCCCCcEEEecCCC-cC-
Confidence            999999999999986 4666654 2      3599999999998866554432       2338999999999984 33 


Q ss_pred             cCCC--CcchHHHH-HHhccccc-ccCCCCccccEEEecCCCcceecCCCCCCCccEEEEeccEeeeecCCCCccCCCCC
Q 048322          298 KLPE--LLPSLEIL-VSKCEKLV-VSLSSYPRLCRLEVDECKELVCRTPIDSKLIKFMTISNSSLDMIGCKGMLYDSQAG  373 (498)
Q Consensus       298 ~lp~--~l~~L~~L-i~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~l  373 (498)
                      .++.  .+++|+.| +.+|.--. ..+..+++|+.|++++|..........+++|++|++++|.+               
T Consensus       169 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l---------------  233 (347)
T 4fmz_A          169 DVTPIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKI---------------  233 (347)
T ss_dssp             CCGGGGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCC---------------
T ss_pred             CchhhccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCcc---------------
Confidence            3332  34556666 66654211 02344788888888888766655555678888888887632               


Q ss_pred             CcCC--CCCCCCCeEEecCC------CCCCCCCccEEEEcCCCCCCCccccCCCCccCCCCCCcCeEeeecCCCCCcCC-
Q 048322          374 SSLP--KPMTTTNVLEFGKL------LEPGFQILETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPNLTLFP-  444 (498)
Q Consensus       374 ~~lp--~~l~~L~~L~i~~~------~~~~lp~L~~L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~~l~~lp-  444 (498)
                      ..++  ..+++|+.|++++|      ....+++|+.|++++| .++.+       ..+..+++|++|++++|. +...+ 
T Consensus       234 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n-~l~~~-------~~~~~l~~L~~L~L~~n~-l~~~~~  304 (347)
T 4fmz_A          234 TDLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSN-QISDI-------SVLNNLSQLNSLFLNNNQ-LGNEDM  304 (347)
T ss_dssp             CCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSS-CCCCC-------GGGGGCTTCSEEECCSSC-CCGGGH
T ss_pred             CCCcchhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCC-ccCCC-------hhhcCCCCCCEEECcCCc-CCCcCh
Confidence            2222  34588999999998      3456778999999886 45432       346788999999999984 44433 


Q ss_pred             CC-CccccccceeeccCc
Q 048322          445 EV-GLPSSLLDLYVNNCP  461 (498)
Q Consensus       445 ~~-~~~~sL~~L~i~~c~  461 (498)
                      .. ...++|++|++++|+
T Consensus       305 ~~l~~l~~L~~L~L~~n~  322 (347)
T 4fmz_A          305 EVIGGLTNLTTLFLSQNH  322 (347)
T ss_dssp             HHHHTCTTCSEEECCSSS
T ss_pred             hHhhccccCCEEEccCCc
Confidence            21 234789999999986

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.76  E-value=2.9e-18  Score=185.29  Aligned_cols=300  Identities=12%  Similarity=0.083  Sum_probs=200.2

Q ss_pred             HhhcccCCcccEEEEecCCCCC--------CcChhhHHHhhhcCC--CCCCCceEEEeecC-CCCCCccccCCCCCCccE
Q 048322          135 AALCEKLNLHALTLEWGSQFDN--------SRDVAVEEHVLDILQ--PHKCIKKVAIRNYG-GARFPLWIGDPLFSKIEF  203 (498)
Q Consensus       135 ~~l~~~~~L~~L~L~~~~~~~~--------~~~~~~~~~~l~~l~--~~~~L~~L~l~~~~-~~~~p~~~~~~~l~~L~~  203 (498)
                      ..+.++++|+.|+|+.+.-...        .........+++.+.  .+++|++|++++|. ...+|.+++  .+++|++
T Consensus       442 ~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~--~L~~L~~  519 (876)
T 4ecn_A          442 KAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLY--DLPELQS  519 (876)
T ss_dssp             GGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGG--GCSSCCE
T ss_pred             HHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHh--CCCCCCE
Confidence            4588899999999998862110        001122334777777  88999999999987 567898888  6999999


Q ss_pred             EeEeCCCCCC--CCCC-CCCc-------cccceeeccccccceecCc--cccCCCCCCCCCCCceeeccCCCcccccccc
Q 048322          204 LELENCNNCV--SLPS-LGLL-------SSLKHLAVKGLKKLKSIES--EVYGEGFSMPFPSLKILRFENLPEWWHWDTD  271 (498)
Q Consensus       204 L~l~~c~~~~--~lp~-i~~l-------~~L~~L~l~~~~~l~~i~~--~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~  271 (498)
                      |+|++|..+.  .+|. ++.+       ++|++|+++++ .+..+|.  .+.      .+++|+.|+++++ .+..++  
T Consensus       520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~l~------~L~~L~~L~Ls~N-~l~~lp--  589 (876)
T 4ecn_A          520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLEEFPASASLQ------KMVKLGLLDCVHN-KVRHLE--  589 (876)
T ss_dssp             EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS-CCCBCCCHHHHT------TCTTCCEEECTTS-CCCBCC--
T ss_pred             EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC-cCCccCChhhhh------cCCCCCEEECCCC-Ccccch--
Confidence            9999986355  4774 5544       49999999986 4668876  444      4889999999877 344332  


Q ss_pred             ccCCccccCCCccceeeeccCCCccccCCCCcc---h-HHHH-HHhcccccccCCC----C--ccccEEEecCCCccee-
Q 048322          272 IKGNVHVDIFPRLQELSVVKCPKLSGKLPELLP---S-LEIL-VSKCEKLVVSLSS----Y--PRLCRLEVDECKELVC-  339 (498)
Q Consensus       272 ~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~---~-L~~L-i~~~~~l~~~~~~----l--~~L~~L~l~~~~~~~~-  339 (498)
                      .     +..+++|+.|++++| .+. .+|..+.   + |+.| +..|. +. .+|.    +  ++|+.|++++|..... 
T Consensus       590 ~-----~~~L~~L~~L~Ls~N-~l~-~lp~~l~~l~~~L~~L~Ls~N~-L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~i  660 (876)
T 4ecn_A          590 A-----FGTNVKLTDLKLDYN-QIE-EIPEDFCAFTDQVEGLGFSHNK-LK-YIPNIFNAKSVYVMGSVDFSYNKIGSEG  660 (876)
T ss_dssp             C-----CCTTSEESEEECCSS-CCS-CCCTTSCEECTTCCEEECCSSC-CC-SCCSCCCTTCSSCEEEEECCSSCTTTTS
T ss_pred             h-----hcCCCcceEEECcCC-ccc-cchHHHhhccccCCEEECcCCC-CC-cCchhhhccccCCCCEEECcCCcCCCcc
Confidence            1     223788888888887 454 7776554   3 5555 65554 22 3443    2  3488888888765432 


Q ss_pred             cCC------CCCCCccEEEEeccEeeee------cCCCCc---cCCCCCCcCCCCC-----------CCCCeEEecCC--
Q 048322          340 RTP------IDSKLIKFMTISNSSLDMI------GCKGML---YDSQAGSSLPKPM-----------TTTNVLEFGKL--  391 (498)
Q Consensus       340 ~~~------~~~~~L~~L~l~~~~l~~~------~~~~l~---~~~~~l~~lp~~l-----------~~L~~L~i~~~--  391 (498)
                      +..      ...++|+.|++++|.+...      .++.|.   ...+.+..+|..+           ++|+.|++++|  
T Consensus       661 p~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L  740 (876)
T 4ecn_A          661 RNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKL  740 (876)
T ss_dssp             SSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCC
T ss_pred             ccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCC
Confidence            111      1245788888887744311      233333   2333555666543           17889999888  


Q ss_pred             -----CCC--CCCCccEEEEcCCCCCCCccccCCCCccCCCCCCcCeEeeec------CCCCCcCCCC-Cccccccceee
Q 048322          392 -----LEP--GFQILETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWN------CPNLTLFPEV-GLPSSLLDLYV  457 (498)
Q Consensus       392 -----~~~--~lp~L~~L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~------c~~l~~lp~~-~~~~sL~~L~i  457 (498)
                           .+.  .+++|+.|+++++ .++.      +|..+..+++|+.|++++      |.....+|.. ..+++|+.|++
T Consensus       741 ~~lp~~l~~~~l~~L~~L~Ls~N-~L~~------lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~L  813 (876)
T 4ecn_A          741 TSLSDDFRATTLPYLSNMDVSYN-CFSS------FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQI  813 (876)
T ss_dssp             CCCCGGGSTTTCTTCCEEECCSS-CCSS------CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEEC
T ss_pred             ccchHHhhhccCCCcCEEEeCCC-CCCc------cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEEC
Confidence                 222  6778999999885 3443      388888899999999976      4345566654 44578999999


Q ss_pred             ccCch
Q 048322          458 NNCPR  462 (498)
Q Consensus       458 ~~c~~  462 (498)
                      ++|.-
T Consensus       814 s~N~L  818 (876)
T 4ecn_A          814 GSNDI  818 (876)
T ss_dssp             CSSCC
T ss_pred             CCCCC
Confidence            98863

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.76  E-value=5.1e-18  Score=163.57  Aligned_cols=240  Identities=16%  Similarity=0.138  Sum_probs=128.6

Q ss_pred             CCceEEEeecCCC---CCCccccCCCCCCccEEeEeC-CCCCCCCCC-CCCccccceeeccccccceecCccccCCCCCC
Q 048322          175 CIKKVAIRNYGGA---RFPLWIGDPLFSKIEFLELEN-CNNCVSLPS-LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSM  249 (498)
Q Consensus       175 ~L~~L~l~~~~~~---~~p~~~~~~~l~~L~~L~l~~-c~~~~~lp~-i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~  249 (498)
                      +++.|+++++...   .+|..+.  .+++|++|++++ +.....+|. ++.+++|++|+++++.-...+|..+.      
T Consensus        51 ~l~~L~L~~~~l~~~~~~~~~l~--~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~------  122 (313)
T 1ogq_A           51 RVNNLDLSGLNLPKPYPIPSSLA--NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLS------  122 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGG--GCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGG------
T ss_pred             eEEEEECCCCCccCCcccChhHh--CCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHh------
Confidence            4455555554443   2444444  355555555553 322334443 55555555555555432223333332      


Q ss_pred             CCCCCceeeccCCCccccccccccCCccccCCCccceeeeccCCCccccCCCCcchHHHHHHhcccccccCCCCc-cccE
Q 048322          250 PFPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSYP-RLCR  328 (498)
Q Consensus       250 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~~l~-~L~~  328 (498)
                      .+++|++|+++++ .+.+..+...     ..+++|++|++++| .+++.+|.                 .+..++ +|++
T Consensus       123 ~l~~L~~L~Ls~N-~l~~~~p~~~-----~~l~~L~~L~L~~N-~l~~~~p~-----------------~l~~l~~~L~~  178 (313)
T 1ogq_A          123 QIKTLVTLDFSYN-ALSGTLPPSI-----SSLPNLVGITFDGN-RISGAIPD-----------------SYGSFSKLFTS  178 (313)
T ss_dssp             GCTTCCEEECCSS-EEESCCCGGG-----GGCTTCCEEECCSS-CCEEECCG-----------------GGGCCCTTCCE
T ss_pred             CCCCCCEEeCCCC-ccCCcCChHH-----hcCCCCCeEECcCC-cccCcCCH-----------------HHhhhhhcCcE
Confidence            2555555555544 2222111111     12556666666655 23334443                 222333 5556


Q ss_pred             EEecCCCcce-ecCC-CCCCCccEEEEeccEeeeecCCCCccCCCCCCcCCCCCCCCCeEEecCC-------CCCCCCCc
Q 048322          329 LEVDECKELV-CRTP-IDSKLIKFMTISNSSLDMIGCKGMLYDSQAGSSLPKPMTTTNVLEFGKL-------LEPGFQIL  399 (498)
Q Consensus       329 L~l~~~~~~~-~~~~-~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~l~~lp~~l~~L~~L~i~~~-------~~~~lp~L  399 (498)
                      |++++|.... .+.. ..+. |+.|++++|.+.....           ..-..+++|+.|++++|       .+..+++|
T Consensus       179 L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~-----------~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L  246 (313)
T 1ogq_A          179 MTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDAS-----------VLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNL  246 (313)
T ss_dssp             EECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCG-----------GGCCTTSCCSEEECCSSEECCBGGGCCCCTTC
T ss_pred             EECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCC-----------HHHhcCCCCCEEECCCCceeeecCcccccCCC
Confidence            6665554432 1111 1122 6666666654432110           00023356666666666       23556779


Q ss_pred             cEEEEcCCCCCCCccccCCCCccCCCCCCcCeEeeecCCCCCcCCCCCccccccceeeccCchhH
Q 048322          400 ETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPNLTLFPEVGLPSSLLDLYVNNCPRLK  464 (498)
Q Consensus       400 ~~L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~sL~~L~i~~c~~l~  464 (498)
                      ++|+++++. +++     .+|.++..+++|++|++++|.....+|..+..++|+.|++.++|.+.
T Consensus       247 ~~L~Ls~N~-l~~-----~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc  305 (313)
T 1ogq_A          247 NGLDLRNNR-IYG-----TLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLC  305 (313)
T ss_dssp             CEEECCSSC-CEE-----CCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEE
T ss_pred             CEEECcCCc-ccC-----cCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCcc
Confidence            999998864 331     13888999999999999998655588877667899999999988553

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.76  E-value=1.7e-18  Score=183.15  Aligned_cols=302  Identities=11%  Similarity=0.093  Sum_probs=197.8

Q ss_pred             HHhhcccCCcccEEEEecCCCCC--------CcChhhHHHhhhcCC--CCCCCceEEEeecC-CCCCCccccCCCCCCcc
Q 048322          134 EAALCEKLNLHALTLEWGSQFDN--------SRDVAVEEHVLDILQ--PHKCIKKVAIRNYG-GARFPLWIGDPLFSKIE  202 (498)
Q Consensus       134 ~~~l~~~~~L~~L~L~~~~~~~~--------~~~~~~~~~~l~~l~--~~~~L~~L~l~~~~-~~~~p~~~~~~~l~~L~  202 (498)
                      ...+.++++|++|+|+.+.-...        .........+++.+.  .+++|++|+++++. ...+|..++  .+++|+
T Consensus       199 p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~--~l~~L~  276 (636)
T 4eco_A          199 SKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK--ALPEMQ  276 (636)
T ss_dssp             CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTT--TCSSCC
T ss_pred             CHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHh--cCCCCC
Confidence            34588899999999998862110        001112233778888  88999999999987 456788887  699999


Q ss_pred             EEeEeCCCCCC--CCCC-CCCc------cccceeeccccccceecCc--cccCCCCCCCCCCCceeeccCCCcccccccc
Q 048322          203 FLELENCNNCV--SLPS-LGLL------SSLKHLAVKGLKKLKSIES--EVYGEGFSMPFPSLKILRFENLPEWWHWDTD  271 (498)
Q Consensus       203 ~L~l~~c~~~~--~lp~-i~~l------~~L~~L~l~~~~~l~~i~~--~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~  271 (498)
                      +|++++|..+.  .+|. ++.+      ++|++|+++++ .++.+|.  .+.      .+++|++|+++++ .+.+..+ 
T Consensus       277 ~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~~ip~~~~l~------~l~~L~~L~L~~N-~l~g~ip-  347 (636)
T 4eco_A          277 LINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLKTFPVETSLQ------KMKKLGMLECLYN-QLEGKLP-  347 (636)
T ss_dssp             EEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CCSSCCCHHHHT------TCTTCCEEECCSC-CCEEECC-
T ss_pred             EEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC-cCCccCchhhhc------cCCCCCEEeCcCC-cCccchh-
Confidence            99999986455  4776 7665      89999999986 4667776  444      4889999999876 3442222 


Q ss_pred             ccCCccccCCCccceeeeccCCCccccCCCCcch----HHHH-HHhcccccccCCC------CccccEEEecCCCccee-
Q 048322          272 IKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPS----LEIL-VSKCEKLVVSLSS------YPRLCRLEVDECKELVC-  339 (498)
Q Consensus       272 ~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~----L~~L-i~~~~~l~~~~~~------l~~L~~L~l~~~~~~~~-  339 (498)
                      .     +..+++|++|++++| .+. .+|..+..    |+.| +.++. +. .+|.      +++|++|++++|..... 
T Consensus       348 ~-----~~~l~~L~~L~L~~N-~l~-~lp~~l~~l~~~L~~L~Ls~N~-l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~  418 (636)
T 4eco_A          348 A-----FGSEIKLASLNLAYN-QIT-EIPANFCGFTEQVENLSFAHNK-LK-YIPNIFDAKSVSVMSAIDFSYNEIGSVD  418 (636)
T ss_dssp             C-----CEEEEEESEEECCSS-EEE-ECCTTSEEECTTCCEEECCSSC-CS-SCCSCCCTTCSSCEEEEECCSSCTTTTT
T ss_pred             h-----hCCCCCCCEEECCCC-ccc-cccHhhhhhcccCcEEEccCCc-Cc-ccchhhhhcccCccCEEECcCCcCCCcc
Confidence            1     122677888888777 454 67765543    4444 54443 22 3332      34677788777765431 


Q ss_pred             c-CCC-------CCCCccEEEEeccEeeee------cCCCCc---cCCCCCCcCCCCC----C-------CCCeEEecCC
Q 048322          340 R-TPI-------DSKLIKFMTISNSSLDMI------GCKGML---YDSQAGSSLPKPM----T-------TTNVLEFGKL  391 (498)
Q Consensus       340 ~-~~~-------~~~~L~~L~l~~~~l~~~------~~~~l~---~~~~~l~~lp~~l----~-------~L~~L~i~~~  391 (498)
                      + ...       .+++|+.|++++|.+...      .++.+.   .....+..+|...    .       +|+.|++++|
T Consensus       419 p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N  498 (636)
T 4eco_A          419 GKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFN  498 (636)
T ss_dssp             TCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSS
T ss_pred             hhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCC
Confidence            1 111       355777777777744311      122232   2233455666543    1       7889999888


Q ss_pred             -------CCC--CCCCccEEEEcCCCCCCCccccCCCCccCCCCCCcCeEeeec------CCCCCcCCCC-Cccccccce
Q 048322          392 -------LEP--GFQILETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWN------CPNLTLFPEV-GLPSSLLDL  455 (498)
Q Consensus       392 -------~~~--~lp~L~~L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~------c~~l~~lp~~-~~~~sL~~L  455 (498)
                             .+.  .+++|+.|+++++. ++.      +|..+..+++|++|++++      +...+.+|.. +..++|++|
T Consensus       499 ~l~~lp~~~~~~~l~~L~~L~Ls~N~-l~~------ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L  571 (636)
T 4eco_A          499 KLTKLSDDFRATTLPYLVGIDLSYNS-FSK------FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQL  571 (636)
T ss_dssp             CCCBCCGGGSTTTCTTCCEEECCSSC-CSS------CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEE
T ss_pred             cCCccChhhhhccCCCcCEEECCCCC-CCC------cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEE
Confidence                   222  67789999998853 443      388888899999999954      3345566754 445789999


Q ss_pred             eeccCch
Q 048322          456 YVNNCPR  462 (498)
Q Consensus       456 ~i~~c~~  462 (498)
                      ++++|.-
T Consensus       572 ~Ls~N~l  578 (636)
T 4eco_A          572 QIGSNDI  578 (636)
T ss_dssp             ECCSSCC
T ss_pred             ECCCCcC
Confidence            9998863

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.75  E-value=1.8e-17  Score=174.69  Aligned_cols=254  Identities=15%  Similarity=0.091  Sum_probs=187.0

Q ss_pred             CCCCCCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCCCCCccccceeeccccccceecCccccCCCCCC
Q 048322          170 LQPHKCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPSLGLLSSLKHLAVKGLKKLKSIESEVYGEGFSM  249 (498)
Q Consensus       170 l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~  249 (498)
                      +..+++|+.|+++++....+| ++.  .+++|++|++++|.. +.+|.+ .+++|++|+++++..+..++  +      .
T Consensus       281 ~~~l~~L~~L~l~~~~~~~l~-~l~--~~~~L~~L~l~~n~l-~~lp~~-~l~~L~~L~l~~n~~~~~~~--~------~  347 (606)
T 3vq2_A          281 FHCLANVSAMSLAGVSIKYLE-DVP--KHFKWQSLSIIRCQL-KQFPTL-DLPFLKSLTLTMNKGSISFK--K------V  347 (606)
T ss_dssp             CGGGTTCSEEEEESCCCCCCC-CCC--TTCCCSEEEEESCCC-SSCCCC-CCSSCCEEEEESCSSCEECC--C------C
T ss_pred             cccCCCCCEEEecCccchhhh-hcc--ccccCCEEEcccccC-cccccC-CCCccceeeccCCcCccchh--h------c
Confidence            556689999999999998888 565  589999999999865 899988 99999999999986666552  1      2


Q ss_pred             CCCCCceeeccCCCcccccc--ccccCCccccCCCccceeeeccCCCccccCCCCc---chHHHH-HHhccccc----cc
Q 048322          250 PFPSLKILRFENLPEWWHWD--TDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELL---PSLEIL-VSKCEKLV----VS  319 (498)
Q Consensus       250 ~~~~L~~L~l~~~~~l~~~~--~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l---~~L~~L-i~~~~~l~----~~  319 (498)
                      .+++|++|+++++ .++...  +..     +..+++|++|++++|. +. .+|..+   ++|+.| +.+|.-..    ..
T Consensus       348 ~l~~L~~L~ls~n-~l~~~~~~~~~-----~~~~~~L~~L~L~~n~-l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  419 (606)
T 3vq2_A          348 ALPSLSYLDLSRN-ALSFSGCCSYS-----DLGTNSLRHLDLSFNG-AI-IMSANFMGLEELQHLDFQHSTLKRVTEFSA  419 (606)
T ss_dssp             CCTTCCEEECCSS-CEEEEEECCHH-----HHCCSCCCEEECCSCS-EE-EECCCCTTCTTCCEEECTTSEEESTTTTTT
T ss_pred             cCCCCCEEECcCC-ccCCCcchhhh-----hccCCcccEeECCCCc-cc-cchhhccCCCCCCeeECCCCccCCccChhh
Confidence            5899999999887 344332  111     2238999999999984 54 566544   455555 66664322    13


Q ss_pred             CCCCccccEEEecCCCcceec--CCCCCCCccEEEEeccEeeeecCCCCccCCCCCCcCCCCCCCCCeEEecCC------
Q 048322          320 LSSYPRLCRLEVDECKELVCR--TPIDSKLIKFMTISNSSLDMIGCKGMLYDSQAGSSLPKPMTTTNVLEFGKL------  391 (498)
Q Consensus       320 ~~~l~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~l~~lp~~l~~L~~L~i~~~------  391 (498)
                      +..+++|++|++++|......  ....+++|++|++++|.+.....+          .....+++|+.|++++|      
T Consensus       420 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~----------~~~~~l~~L~~L~Ls~n~l~~~~  489 (606)
T 3vq2_A          420 FLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLS----------NVFANTTNLTFLDLSKCQLEQIS  489 (606)
T ss_dssp             TTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEEC----------SCCTTCTTCCEEECTTSCCCEEC
T ss_pred             hhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchH----------HhhccCCCCCEEECCCCcCCccC
Confidence            445899999999999876632  244588999999998865431111          01134488999999999      


Q ss_pred             --CCCCCCCccEEEEcCCCCCCCccccCCCCccCCCCCCcCeEeeecCCCCCcCCCC--CccccccceeeccCc
Q 048322          392 --LEPGFQILETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPNLTLFPEV--GLPSSLLDLYVNNCP  461 (498)
Q Consensus       392 --~~~~lp~L~~L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~~l~~lp~~--~~~~sL~~L~i~~c~  461 (498)
                        .+..+++|++|++++|. ++.+     .|..+..+++|++|++++| .++.+|..  .++.+|+.|+++++|
T Consensus       490 ~~~~~~l~~L~~L~Ls~N~-l~~~-----~~~~~~~l~~L~~L~l~~N-~l~~~p~~~~~l~~~L~~l~l~~N~  556 (606)
T 3vq2_A          490 WGVFDTLHRLQLLNMSHNN-LLFL-----DSSHYNQLYSLSTLDCSFN-RIETSKGILQHFPKSLAFFNLTNNS  556 (606)
T ss_dssp             TTTTTTCTTCCEEECCSSC-CSCE-----EGGGTTTCTTCCEEECTTS-CCCCEESCGGGSCTTCCEEECCSCC
T ss_pred             hhhhcccccCCEEECCCCc-CCCc-----CHHHccCCCcCCEEECCCC-cCcccCHhHhhhcccCcEEEccCCC
Confidence              35678889999999974 4432     2788999999999999997 58888875  344579999998865

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.75  E-value=1.2e-17  Score=176.08  Aligned_cols=41  Identities=22%  Similarity=0.151  Sum_probs=26.2

Q ss_pred             CccCCCCCCcCeEeeecCCCCCcCCCC--CccccccceeeccCc
Q 048322          420 SMGFQRLTSLQSLKIWNCPNLTLFPEV--GLPSSLLDLYVNNCP  461 (498)
Q Consensus       420 ~~~l~~l~~L~~L~l~~c~~l~~lp~~--~~~~sL~~L~i~~c~  461 (498)
                      |..+..+++|++|++++| .+..++..  ...++|++|++++|.
T Consensus       466 ~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~  508 (606)
T 3vq2_A          466 SNVFANTTNLTFLDLSKC-QLEQISWGVFDTLHRLQLLNMSHNN  508 (606)
T ss_dssp             CSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             HHhhccCCCCCEEECCCC-cCCccChhhhcccccCCEEECCCCc
Confidence            566677777777777776 44444322  334677777777774

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.75  E-value=3e-18  Score=174.16  Aligned_cols=120  Identities=14%  Similarity=0.168  Sum_probs=77.2

Q ss_pred             ccccEEEecCCCcceec--CCCCCCCccEEEEeccEeeeecCCCCccCCCCCCcCCCCCCCCCeEEecCC--------CC
Q 048322          324 PRLCRLEVDECKELVCR--TPIDSKLIKFMTISNSSLDMIGCKGMLYDSQAGSSLPKPMTTTNVLEFGKL--------LE  393 (498)
Q Consensus       324 ~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~l~~lp~~l~~L~~L~i~~~--------~~  393 (498)
                      ++|++|++++|......  ....+++|+.|++++|.+......          . -..+++|+.|++++|        .+
T Consensus       275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~----------~-~~~l~~L~~L~Ls~N~l~~~~~~~~  343 (455)
T 3v47_A          275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDN----------A-FWGLTHLLKLNLSQNFLGSIDSRMF  343 (455)
T ss_dssp             SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTT----------T-TTTCTTCCEEECCSSCCCEECGGGG
T ss_pred             cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChh----------H-hcCcccCCEEECCCCccCCcChhHh
Confidence            45666666665544422  123356666666665532221100          0 023478999999988        34


Q ss_pred             CCCCCccEEEEcCCCCCCCccccCCCCccCCCCCCcCeEeeecCCCCCcCCCC--CccccccceeeccCc
Q 048322          394 PGFQILETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPNLTLFPEV--GLPSSLLDLYVNNCP  461 (498)
Q Consensus       394 ~~lp~L~~L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~~l~~lp~~--~~~~sL~~L~i~~c~  461 (498)
                      ..+++|++|+++++. ++.+     .|..+..+++|++|++++| .++.+|..  ...++|+.|++++++
T Consensus       344 ~~l~~L~~L~Ls~N~-l~~~-----~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~  406 (455)
T 3v47_A          344 ENLDKLEVLDLSYNH-IRAL-----GDQSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP  406 (455)
T ss_dssp             TTCTTCCEEECCSSC-CCEE-----CTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             cCcccCCEEECCCCc-cccc-----ChhhccccccccEEECCCC-ccccCCHhHhccCCcccEEEccCCC
Confidence            567889999998864 4322     2678889999999999985 77788764  345789999998654

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.75  E-value=1.2e-17  Score=169.33  Aligned_cols=279  Identities=15%  Similarity=0.085  Sum_probs=144.8

Q ss_pred             hhcccCCcccEEEEecCCCCCCcChhhHHHhhhcCCCCCCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCC
Q 048322          136 ALCEKLNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSL  215 (498)
Q Consensus       136 ~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l  215 (498)
                      .+..+++|++|+++.+.- ..         +  .+..+++|++|+++++....+|  ++  .+++|++|++++| .+..+
T Consensus        59 ~l~~l~~L~~L~Ls~n~l-~~---------~--~~~~l~~L~~L~Ls~N~l~~~~--~~--~l~~L~~L~L~~N-~l~~l  121 (457)
T 3bz5_A           59 GIEKLTGLTKLICTSNNI-TT---------L--DLSQNTNLTYLACDSNKLTNLD--VT--PLTKLTYLNCDTN-KLTKL  121 (457)
T ss_dssp             TGGGCTTCSEEECCSSCC-SC---------C--CCTTCTTCSEEECCSSCCSCCC--CT--TCTTCCEEECCSS-CCSCC
T ss_pred             hhcccCCCCEEEccCCcC-Ce---------E--ccccCCCCCEEECcCCCCceee--cC--CCCcCCEEECCCC-cCCee
Confidence            355666777777765541 00         0  1445567777777776665554  33  4667777777765 44455


Q ss_pred             CCCCCccccceeeccccccceecCccccCCCCCCCCCCCceeeccCCCccccccccccCCccccCCCccceeeeccCCCc
Q 048322          216 PSLGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKL  295 (498)
Q Consensus       216 p~i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l  295 (498)
                      | ++.+++|++|+++++ .++.++        +..+++|++|+++++..+..+.        +..+++|++|++++| .+
T Consensus       122 ~-~~~l~~L~~L~l~~N-~l~~l~--------l~~l~~L~~L~l~~n~~~~~~~--------~~~l~~L~~L~ls~n-~l  182 (457)
T 3bz5_A          122 D-VSQNPLLTYLNCARN-TLTEID--------VSHNTQLTELDCHLNKKITKLD--------VTPQTQLTTLDCSFN-KI  182 (457)
T ss_dssp             C-CTTCTTCCEEECTTS-CCSCCC--------CTTCTTCCEEECTTCSCCCCCC--------CTTCTTCCEEECCSS-CC
T ss_pred             c-CCCCCcCCEEECCCC-ccceec--------cccCCcCCEEECCCCCcccccc--------cccCCcCCEEECCCC-cc
Confidence            4 666777777777664 344442        1246677777776664333321        122677777777776 44


Q ss_pred             cccCC-CCcchHHHH-HHhcccccccCCCCccccEEEecCCCcceecCCCCCCCccEEEEeccEeeeecCCCCccCCCCC
Q 048322          296 SGKLP-ELLPSLEIL-VSKCEKLVVSLSSYPRLCRLEVDECKELVCRTPIDSKLIKFMTISNSSLDMIGCKGMLYDSQAG  373 (498)
Q Consensus       296 ~~~lp-~~l~~L~~L-i~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~l  373 (498)
                      + .+| ..+++|+.| +..+.--...+..+++|++|++++|....++ ...+++|+.|++++|.+.....    ..+..+
T Consensus       183 ~-~l~l~~l~~L~~L~l~~N~l~~~~l~~l~~L~~L~Ls~N~l~~ip-~~~l~~L~~L~l~~N~l~~~~~----~~l~~L  256 (457)
T 3bz5_A          183 T-ELDVSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTEID-VTPLTQLTYFDCSVNPLTELDV----STLSKL  256 (457)
T ss_dssp             C-CCCCTTCTTCCEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCCC----TTCTTC
T ss_pred             c-eeccccCCCCCEEECcCCcCCeeccccCCCCCEEECcCCcccccC-ccccCCCCEEEeeCCcCCCcCH----HHCCCC
Confidence            4 344 223444444 4444322113444666667777666655544 4456666777766664332211    112222


Q ss_pred             CcCCCCCCCCCeEEecCC------CCCCCCCccEEEEcCCCCCCCcc----ccCCCCccCCCCCCcCeEeeecCCCCCcC
Q 048322          374 SSLPKPMTTTNVLEFGKL------LEPGFQILETLVIGNSEQLKPWR----QGRGLSMGFQRLTSLQSLKIWNCPNLTLF  443 (498)
Q Consensus       374 ~~lp~~l~~L~~L~i~~~------~~~~lp~L~~L~l~~c~~L~~l~----~l~~l~~~l~~l~~L~~L~l~~c~~l~~l  443 (498)
                      +.+--...+|+.|++++|      +.+.+++|+.|++++|..+..+.    .+..+  .+..+++|++|++++| +++.+
T Consensus       257 ~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L--~l~~~~~L~~L~L~~N-~l~~l  333 (457)
T 3bz5_A          257 TTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITEL--DLSQNPKLVYLYLNNT-ELTEL  333 (457)
T ss_dssp             CEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCC--CCTTCTTCCEEECTTC-CCSCC
T ss_pred             CEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccceeccCCCcceEe--chhhcccCCEEECCCC-ccccc
Confidence            222112234555555555      33455667777776666554321    11111  2344556666666553 44444


Q ss_pred             CCCCccccccceeeccC
Q 048322          444 PEVGLPSSLLDLYVNNC  460 (498)
Q Consensus       444 p~~~~~~sL~~L~i~~c  460 (498)
                      + .+..++|+.|+++++
T Consensus       334 ~-l~~l~~L~~L~l~~N  349 (457)
T 3bz5_A          334 D-VSHNTKLKSLSCVNA  349 (457)
T ss_dssp             C-CTTCTTCSEEECCSS
T ss_pred             c-cccCCcCcEEECCCC
Confidence            3 223356666666554

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.75  E-value=6.1e-18  Score=176.16  Aligned_cols=111  Identities=17%  Similarity=0.198  Sum_probs=63.9

Q ss_pred             hhcccCCcccEEEEecCCCCCCcChhhHHHhhhcCCCCCCCceEEEeecCCCCCCcc-ccCCCCCCccEEeEeCCCCCC-
Q 048322          136 ALCEKLNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPLW-IGDPLFSKIEFLELENCNNCV-  213 (498)
Q Consensus       136 ~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~-~~~~~l~~L~~L~l~~c~~~~-  213 (498)
                      .+.++++|++|+++.+.-.         ....+.+..+++|++|+++++.....|.. ++  .+++|++|++++|.... 
T Consensus        45 ~~~~l~~L~~L~Ls~n~i~---------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~~  113 (549)
T 2z81_A           45 DLRACANLQVLILKSSRIN---------TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFG--PLSSLKYLNLMGNPYQTL  113 (549)
T ss_dssp             TTSSCTTCCEEECTTSCCC---------EECTTTTTTCTTCCEEECTTSCCCSCCHHHHT--TCTTCCEEECTTCCCSSS
T ss_pred             hhhcCCcccEEECCCCCcC---------ccChhhccccccCCEEECCCCccCccCHHHhc--cCCCCcEEECCCCccccc
Confidence            4556777777777665410         00113344556777777777766666543 44  46777777777753222 


Q ss_pred             CCCC-CCCccccceeeccccccceecCccccCCCCCCCCCCCceeeccCC
Q 048322          214 SLPS-LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFENL  262 (498)
Q Consensus       214 ~lp~-i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~  262 (498)
                      ..|. ++.+++|++|+++++..+..++...++     .+++|++|+++++
T Consensus       114 ~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~-----~l~~L~~L~L~~n  158 (549)
T 2z81_A          114 GVTSLFPNLTNLQTLRIGNVETFSEIRRIDFA-----GLTSLNELEIKAL  158 (549)
T ss_dssp             CSSCSCTTCTTCCEEEEEESSSCCEECTTTTT-----TCCEEEEEEEEET
T ss_pred             chhhhhhccCCccEEECCCCccccccCHhhhh-----cccccCeeeccCC
Confidence            2333 667777777777776555666543222     3566666666544

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.74  E-value=1.4e-17  Score=169.71  Aligned_cols=87  Identities=15%  Similarity=0.147  Sum_probs=59.5

Q ss_pred             hcccCCcccEEEEecCCCCCCcChhhHHHhhhcCCCCCCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCC
Q 048322          137 LCEKLNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLP  216 (498)
Q Consensus       137 l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp  216 (498)
                      +..+++|++|+++.+.-. .         +.. +..+++|++|+++++....++. +.  .+++|++|++++| .+..+|
T Consensus        64 ~~~l~~L~~L~Ls~n~l~-~---------~~~-~~~l~~L~~L~l~~n~l~~~~~-~~--~l~~L~~L~L~~n-~l~~~~  128 (466)
T 1o6v_A           64 VEYLNNLTQINFSNNQLT-D---------ITP-LKNLTKLVDILMNNNQIADITP-LA--NLTNLTGLTLFNN-QITDID  128 (466)
T ss_dssp             GGGCTTCCEEECCSSCCC-C---------CGG-GTTCTTCCEEECCSSCCCCCGG-GT--TCTTCCEEECCSS-CCCCCG
T ss_pred             hhhhcCCCEEECCCCccC-C---------chh-hhccccCCEEECCCCccccChh-hc--CCCCCCEEECCCC-CCCCCh
Confidence            556788888888766421 0         111 4556788888888887777666 44  5788888888876 566677


Q ss_pred             CCCCccccceeeccccccceecC
Q 048322          217 SLGLLSSLKHLAVKGLKKLKSIE  239 (498)
Q Consensus       217 ~i~~l~~L~~L~l~~~~~l~~i~  239 (498)
                      +++.+++|++|++++|. +..++
T Consensus       129 ~~~~l~~L~~L~l~~n~-l~~~~  150 (466)
T 1o6v_A          129 PLKNLTNLNRLELSSNT-ISDIS  150 (466)
T ss_dssp             GGTTCTTCSEEEEEEEE-ECCCG
T ss_pred             HHcCCCCCCEEECCCCc-cCCCh
Confidence            77888888888887753 44443

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.74  E-value=2.5e-17  Score=163.97  Aligned_cols=295  Identities=16%  Similarity=0.131  Sum_probs=203.5

Q ss_pred             ccCCcccEEEEecCCCCCCcChhhHHHhhhcCCCCCCCceEEEeecCCCCCCc-cccCCCCCCccEEeEeCCCCCCCCCC
Q 048322          139 EKLNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPL-WIGDPLFSKIEFLELENCNNCVSLPS  217 (498)
Q Consensus       139 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~-~~~~~~l~~L~~L~l~~c~~~~~lp~  217 (498)
                      ...+++.|++..+.-      ......++   ..+++|++|+++++....+|. .+.  .+++|++|++++|. +..+|+
T Consensus        43 ~l~~l~~l~l~~~~l------~~l~~~~~---~~l~~L~~L~L~~n~i~~~~~~~~~--~l~~L~~L~L~~n~-l~~~~~  110 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTM------RKLPAALL---DSFRQVELLNLNDLQIEEIDTYAFA--YAHTIQKLYMGFNA-IRYLPP  110 (390)
T ss_dssp             GGCCCSEEEEESCEE------SEECTHHH---HHCCCCSEEECTTSCCCEECTTTTT--TCTTCCEEECCSSC-CCCCCT
T ss_pred             ccCCceEEEecCCch------hhCChhHh---cccccCcEEECCCCcccccChhhcc--CCCCcCEEECCCCC-CCcCCH
Confidence            467899999976641      11111222   234899999999998777664 455  68999999999974 666654


Q ss_pred             --CCCccccceeeccccccceecCccccCCCCCCCCCCCceeeccCCCccccccccccCCccccCCCccceeeeccCCCc
Q 048322          218 --LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKL  295 (498)
Q Consensus       218 --i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l  295 (498)
                        ++.+++|++|+++++ .++.+|...++     .+++|++|+++++ .+....+....     .+++|++|++++| .+
T Consensus       111 ~~~~~l~~L~~L~L~~n-~l~~l~~~~~~-----~l~~L~~L~L~~n-~l~~~~~~~~~-----~l~~L~~L~l~~n-~l  177 (390)
T 3o6n_A          111 HVFQNVPLLTVLVLERN-DLSSLPRGIFH-----NTPKLTTLSMSNN-NLERIEDDTFQ-----ATTSLQNLQLSSN-RL  177 (390)
T ss_dssp             TTTTTCTTCCEEECCSS-CCCCCCTTTTT-----TCTTCCEEECCSS-CCCBCCTTTTS-----SCTTCCEEECCSS-CC
T ss_pred             HHhcCCCCCCEEECCCC-ccCcCCHHHhc-----CCCCCcEEECCCC-ccCccChhhcc-----CCCCCCEEECCCC-cC
Confidence              889999999999986 57888876554     5899999999887 44544433222     3899999999988 44


Q ss_pred             cccCC-CCcchHHHH-HHhcccccccCCCCccccEEEecCCCcceecCCCCCCCccEEEEeccEeeeecCCCCccCCCCC
Q 048322          296 SGKLP-ELLPSLEIL-VSKCEKLVVSLSSYPRLCRLEVDECKELVCRTPIDSKLIKFMTISNSSLDMIGCKGMLYDSQAG  373 (498)
Q Consensus       296 ~~~lp-~~l~~L~~L-i~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~l  373 (498)
                      + .++ ..+++|+.| +..+. +. .++..++|++|++++|....++.. .+++|+.|++++|.+...            
T Consensus       178 ~-~~~~~~l~~L~~L~l~~n~-l~-~~~~~~~L~~L~l~~n~l~~~~~~-~~~~L~~L~l~~n~l~~~------------  241 (390)
T 3o6n_A          178 T-HVDLSLIPSLFHANVSYNL-LS-TLAIPIAVEELDASHNSINVVRGP-VNVELTILKLQHNNLTDT------------  241 (390)
T ss_dssp             S-BCCGGGCTTCSEEECCSSC-CS-EEECCSSCSEEECCSSCCCEEECC-CCSSCCEEECCSSCCCCC------------
T ss_pred             C-ccccccccccceeeccccc-cc-ccCCCCcceEEECCCCeeeecccc-ccccccEEECCCCCCccc------------
Confidence            4 333 345556655 54432 22 334456888888888877665443 357889999888733221            


Q ss_pred             CcCCCCCCCCCeEEecCC--------CCCCCCCccEEEEcCCCCCCCccccCCCCccCCCCCCcCeEeeecCCCCCcCCC
Q 048322          374 SSLPKPMTTTNVLEFGKL--------LEPGFQILETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPNLTLFPE  445 (498)
Q Consensus       374 ~~lp~~l~~L~~L~i~~~--------~~~~lp~L~~L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~~l~~lp~  445 (498)
                      ..+ ..+++|+.|++++|        .+..+++|+.|+++++ .++.+      |..+..+++|++|++++| .+..+|.
T Consensus       242 ~~l-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~------~~~~~~l~~L~~L~L~~n-~l~~~~~  312 (390)
T 3o6n_A          242 AWL-LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVAL------NLYGQPIPTLKVLDLSHN-HLLHVER  312 (390)
T ss_dssp             GGG-GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSS-CCCEE------ECSSSCCTTCCEEECCSS-CCCCCGG
T ss_pred             HHH-cCCCCccEEECCCCcCCCcChhHccccccCCEEECCCC-cCccc------CcccCCCCCCCEEECCCC-cceecCc
Confidence            111 34488999999998        3467888999999985 45443      667788999999999997 6777776


Q ss_pred             C-CccccccceeeccCchhHhhhccCCCCCCCCcCCCCeEEECceEe
Q 048322          446 V-GLPSSLLDLYVNNCPRLKKVCKRDQGKEWPKIAHIPWVVIDGKFI  491 (498)
Q Consensus       446 ~-~~~~sL~~L~i~~c~~l~~~~~~~~~~~~~~i~hi~~~~~~~~~~  491 (498)
                      . ...++|++|++++|+- ..       .+......+..+.+.+..+
T Consensus       313 ~~~~l~~L~~L~L~~N~i-~~-------~~~~~~~~L~~L~l~~N~~  351 (390)
T 3o6n_A          313 NQPQFDRLENLYLDHNSI-VT-------LKLSTHHTLKNLTLSHNDW  351 (390)
T ss_dssp             GHHHHTTCSEEECCSSCC-CC-------CCCCTTCCCSEEECCSSCE
T ss_pred             cccccCcCCEEECCCCcc-ce-------eCchhhccCCEEEcCCCCc
Confidence            4 3458999999999862 11       1123345666677766444

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.73  E-value=3.2e-17  Score=166.22  Aligned_cols=59  Identities=10%  Similarity=0.115  Sum_probs=27.4

Q ss_pred             CCCCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCCCCCccccceeeccccccce
Q 048322          172 PHKCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPSLGLLSSLKHLAVKGLKKLK  236 (498)
Q Consensus       172 ~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~i~~l~~L~~L~l~~~~~l~  236 (498)
                      .+++|++|+++++....+|  ++  .+++|++|++++| .++.+| ++.+++|++|++++|..++
T Consensus       104 ~l~~L~~L~L~~N~l~~l~--~~--~l~~L~~L~l~~N-~l~~l~-l~~l~~L~~L~l~~n~~~~  162 (457)
T 3bz5_A          104 PLTKLTYLNCDTNKLTKLD--VS--QNPLLTYLNCARN-TLTEID-VSHNTQLTELDCHLNKKIT  162 (457)
T ss_dssp             TCTTCCEEECCSSCCSCCC--CT--TCTTCCEEECTTS-CCSCCC-CTTCTTCCEEECTTCSCCC
T ss_pred             CCCcCCEEECCCCcCCeec--CC--CCCcCCEEECCCC-ccceec-cccCCcCCEEECCCCCccc
Confidence            3445555555555444443  22  3455555555543 233332 4455555555555543333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.73  E-value=9.1e-17  Score=164.31  Aligned_cols=250  Identities=18%  Similarity=0.118  Sum_probs=173.7

Q ss_pred             CCCceEEEeecCCCCCC-ccccCCCCCCccEEeEeCCCCCCCC-CC-CCCccccceeeccccccceecCccccCCCCCCC
Q 048322          174 KCIKKVAIRNYGGARFP-LWIGDPLFSKIEFLELENCNNCVSL-PS-LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMP  250 (498)
Q Consensus       174 ~~L~~L~l~~~~~~~~p-~~~~~~~l~~L~~L~l~~c~~~~~l-p~-i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~  250 (498)
                      +++++|+++++....++ ..+.  .+++|++|+|++| .+..+ |. ++.+++|++|+++++ .++.++...+.     .
T Consensus        32 ~~l~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~-----~  102 (477)
T 2id5_A           32 TETRLLDLGKNRIKTLNQDEFA--SFPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRSN-RLKLIPLGVFT-----G  102 (477)
T ss_dssp             TTCSEEECCSSCCCEECTTTTT--TCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCCSCCTTSST-----T
T ss_pred             CCCcEEECCCCccceECHhHcc--CCCCCCEEECCCC-ccCEeChhhhhCCccCCEEECCCC-cCCccCccccc-----C
Confidence            68999999999887774 4455  6899999999997 45555 54 999999999999985 58888876554     5


Q ss_pred             CCCCceeeccCCCccccccccccCCccccCCCccceeeeccCCCccccCCCCc---chHHHH-HHhcccccc----cCCC
Q 048322          251 FPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELL---PSLEIL-VSKCEKLVV----SLSS  322 (498)
Q Consensus       251 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l---~~L~~L-i~~~~~l~~----~~~~  322 (498)
                      +++|++|+++++ .+....+....     .+++|++|+++++ .+.+..|..+   ++|+.| +.+|. +..    .+..
T Consensus       103 l~~L~~L~Ls~n-~i~~~~~~~~~-----~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~  174 (477)
T 2id5_A          103 LSNLTKLDISEN-KIVILLDYMFQ-----DLYNLKSLEVGDN-DLVYISHRAFSGLNSLEQLTLEKCN-LTSIPTEALSH  174 (477)
T ss_dssp             CTTCCEEECTTS-CCCEECTTTTT-----TCTTCCEEEECCT-TCCEECTTSSTTCTTCCEEEEESCC-CSSCCHHHHTT
T ss_pred             CCCCCEEECCCC-ccccCChhHcc-----ccccCCEEECCCC-ccceeChhhccCCCCCCEEECCCCc-CcccChhHhcc
Confidence            899999999987 44444332222     3899999999988 4443444433   344444 55442 221    1334


Q ss_pred             CccccEEEecCCCcceecC--CCCCCCccEEEEeccEeeeecCCCCccCCCCCCcCCCCC---CCCCeEEecCCC-----
Q 048322          323 YPRLCRLEVDECKELVCRT--PIDSKLIKFMTISNSSLDMIGCKGMLYDSQAGSSLPKPM---TTTNVLEFGKLL-----  392 (498)
Q Consensus       323 l~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~l~~lp~~l---~~L~~L~i~~~~-----  392 (498)
                      +++|+.|++.+|....++.  ...+++|+.|++++|              ..+..+|...   .+|+.|++++|.     
T Consensus       175 l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~--------------~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~  240 (477)
T 2id5_A          175 LHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHW--------------PYLDTMTPNCLYGLNLTSLSITHCNLTAVP  240 (477)
T ss_dssp             CTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECC--------------TTCCEECTTTTTTCCCSEEEEESSCCCSCC
T ss_pred             cCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCC--------------ccccccCcccccCccccEEECcCCcccccC
Confidence            7777777777776555432  334677777777654              2333444322   589999999982     


Q ss_pred             ---CCCCCCccEEEEcCCCCCCCccccCCCCccCCCCCCcCeEeeecCCCCCcCCCC--CccccccceeeccCc
Q 048322          393 ---EPGFQILETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPNLTLFPEV--GLPSSLLDLYVNNCP  461 (498)
Q Consensus       393 ---~~~lp~L~~L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~~l~~lp~~--~~~~sL~~L~i~~c~  461 (498)
                         +..+++|+.|+++++. ++.+.     +..+..+++|++|++++| .+..++..  ...++|+.|++++|.
T Consensus       241 ~~~~~~l~~L~~L~Ls~n~-l~~~~-----~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~  307 (477)
T 2id5_A          241 YLAVRHLVYLRFLNLSYNP-ISTIE-----GSMLHELLRLQEIQLVGG-QLAVVEPYAFRGLNYLRVLNVSGNQ  307 (477)
T ss_dssp             HHHHTTCTTCCEEECCSSC-CCEEC-----TTSCTTCTTCCEEECCSS-CCSEECTTTBTTCTTCCEEECCSSC
T ss_pred             HHHhcCccccCeeECCCCc-CCccC-----hhhccccccCCEEECCCC-ccceECHHHhcCcccCCEEECCCCc
Confidence               3466789999999864 44321     456788999999999996 56666433  334899999999883

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.73  E-value=1.1e-16  Score=167.46  Aligned_cols=249  Identities=23%  Similarity=0.159  Sum_probs=183.4

Q ss_pred             CCcccEEEEecCCCCCCcChhhHHHhhhcCCCCCCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCCCCC
Q 048322          141 LNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPSLGL  220 (498)
Q Consensus       141 ~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~i~~  220 (498)
                      .+++.|+++.+.-.          .++..+  +++|++|+++++....+|.     .+++|++|+|++| .++.+|.  .
T Consensus        40 ~~l~~L~ls~n~L~----------~lp~~l--~~~L~~L~L~~N~l~~lp~-----~l~~L~~L~Ls~N-~l~~lp~--~   99 (622)
T 3g06_A           40 NGNAVLNVGESGLT----------TLPDCL--PAHITTLVIPDNNLTSLPA-----LPPELRTLEVSGN-QLTSLPV--L   99 (622)
T ss_dssp             HCCCEEECCSSCCS----------CCCSCC--CTTCSEEEECSCCCSCCCC-----CCTTCCEEEECSC-CCSCCCC--C
T ss_pred             CCCcEEEecCCCcC----------ccChhh--CCCCcEEEecCCCCCCCCC-----cCCCCCEEEcCCC-cCCcCCC--C
Confidence            46888888766421          122223  2789999999999888887     3689999999996 5778887  7


Q ss_pred             ccccceeeccccccceecCccccCCCCCCCCCCCceeeccCCCccccccccccCCccccCCCccceeeeccCCCccccCC
Q 048322          221 LSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLP  300 (498)
Q Consensus       221 l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp  300 (498)
                      +++|++|+++++ .++.+|.         .+++|+.|+++++ .++.+...         +++|++|++++| .++ .+|
T Consensus       100 l~~L~~L~Ls~N-~l~~l~~---------~l~~L~~L~L~~N-~l~~lp~~---------l~~L~~L~Ls~N-~l~-~l~  157 (622)
T 3g06_A          100 PPGLLELSIFSN-PLTHLPA---------LPSGLCKLWIFGN-QLTSLPVL---------PPGLQELSVSDN-QLA-SLP  157 (622)
T ss_dssp             CTTCCEEEECSC-CCCCCCC---------CCTTCCEEECCSS-CCSCCCCC---------CTTCCEEECCSS-CCS-CCC
T ss_pred             CCCCCEEECcCC-cCCCCCC---------CCCCcCEEECCCC-CCCcCCCC---------CCCCCEEECcCC-cCC-CcC
Confidence            889999999885 5777764         3788999999876 45544321         689999999988 565 677


Q ss_pred             CCcchHHHH-HHhcccccccCCC-CccccEEEecCCCcceecCCCCCCCccEEEEeccEeeeecCCCCccCCCCCCcCCC
Q 048322          301 ELLPSLEIL-VSKCEKLVVSLSS-YPRLCRLEVDECKELVCRTPIDSKLIKFMTISNSSLDMIGCKGMLYDSQAGSSLPK  378 (498)
Q Consensus       301 ~~l~~L~~L-i~~~~~l~~~~~~-l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~l~~lp~  378 (498)
                      ..+++|+.| +.++. +. .+|. +++|+.|++++|....++.  .+++|+.|++++|               .+..+|.
T Consensus       158 ~~~~~L~~L~L~~N~-l~-~l~~~~~~L~~L~Ls~N~l~~l~~--~~~~L~~L~L~~N---------------~l~~l~~  218 (622)
T 3g06_A          158 ALPSELCKLWAYNNQ-LT-SLPMLPSGLQELSVSDNQLASLPT--LPSELYKLWAYNN---------------RLTSLPA  218 (622)
T ss_dssp             CCCTTCCEEECCSSC-CS-CCCCCCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSS---------------CCSSCCC
T ss_pred             CccCCCCEEECCCCC-CC-CCcccCCCCcEEECCCCCCCCCCC--ccchhhEEECcCC---------------cccccCC
Confidence            777777777 66543 22 2334 7889999999887665543  2578888888876               5556676


Q ss_pred             CCCCCCeEEecCCCC----CCCCCccEEEEcCCCCCCCccccCCCCccCCCCCCcCeEeeecCCCCCcCCCC-Ccccccc
Q 048322          379 PMTTTNVLEFGKLLE----PGFQILETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPNLTLFPEV-GLPSSLL  453 (498)
Q Consensus       379 ~l~~L~~L~i~~~~~----~~lp~L~~L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~~l~~lp~~-~~~~sL~  453 (498)
                      .+++|+.|++++|.+    ..+++|+.|+++++ .++.+      |.   .+++|++|++++| .++.+|.. ...++|+
T Consensus       219 ~~~~L~~L~Ls~N~L~~lp~~l~~L~~L~Ls~N-~L~~l------p~---~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~  287 (622)
T 3g06_A          219 LPSGLKELIVSGNRLTSLPVLPSELKELMVSGN-RLTSL------PM---LPSGLLSLSVYRN-QLTRLPESLIHLSSET  287 (622)
T ss_dssp             CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSS-CCSCC------CC---CCTTCCEEECCSS-CCCSCCGGGGGSCTTC
T ss_pred             CCCCCCEEEccCCccCcCCCCCCcCcEEECCCC-CCCcC------Cc---ccccCcEEeCCCC-CCCcCCHHHhhccccC
Confidence            678899999999833    34556999999885 45543      55   5678999999986 67788864 4457899


Q ss_pred             ceeeccCc
Q 048322          454 DLYVNNCP  461 (498)
Q Consensus       454 ~L~i~~c~  461 (498)
                      .|++++|+
T Consensus       288 ~L~L~~N~  295 (622)
T 3g06_A          288 TVNLEGNP  295 (622)
T ss_dssp             EEECCSCC
T ss_pred             EEEecCCC
Confidence            99999886

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.72  E-value=1.2e-17  Score=176.25  Aligned_cols=261  Identities=13%  Similarity=0.130  Sum_probs=175.0

Q ss_pred             CCCCCCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCC-CC-CCCccccceeeccccccceecCccccCCCC
Q 048322          170 LQPHKCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSL-PS-LGLLSSLKHLAVKGLKKLKSIESEVYGEGF  247 (498)
Q Consensus       170 l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l-p~-i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~  247 (498)
                      +..+++|++|+++++....+|.++.  .+++|++|++++|. +..+ |. ++.+++|++|+++++.....++...++   
T Consensus       274 ~~~l~~L~~L~l~~n~l~~lp~~l~--~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~---  347 (606)
T 3t6q_A          274 FHCFSGLQELDLTATHLSELPSGLV--GLSTLKKLVLSANK-FENLCQISASNFPSLTHLSIKGNTKRLELGTGCLE---  347 (606)
T ss_dssp             TTTCTTCSEEECTTSCCSCCCSSCC--SCTTCCEEECTTCC-CSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTT---
T ss_pred             hccccCCCEEeccCCccCCCChhhc--ccccCCEEECccCC-cCcCchhhhhccCcCCEEECCCCCcccccchhhhh---
Confidence            4556788888888888888888776  57888888888864 4444 32 778888888888887544455554332   


Q ss_pred             CCCCCCCceeeccCCCcccccc--ccccCCccccCCCccceeeeccCCCccccCCCCc---chHHHH-HHhcccccc---
Q 048322          248 SMPFPSLKILRFENLPEWWHWD--TDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELL---PSLEIL-VSKCEKLVV---  318 (498)
Q Consensus       248 ~~~~~~L~~L~l~~~~~l~~~~--~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l---~~L~~L-i~~~~~l~~---  318 (498)
                        .+++|++|+++++ .+....  +..     +..+++|++|++++|. +.+..|..+   ++|+.| +.++.-...   
T Consensus       348 --~l~~L~~L~l~~n-~l~~~~~~~~~-----~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  418 (606)
T 3t6q_A          348 --NLENLRELDLSHD-DIETSDCCNLQ-----LRNLSHLQSLNLSYNE-PLSLKTEAFKECPQLELLDLAFTRLKVKDAQ  418 (606)
T ss_dssp             --TCTTCCEEECCSS-CCCEEEESTTT-----TTTCTTCCEEECCSCS-CEEECTTTTTTCTTCSEEECTTCCEECCTTC
T ss_pred             --ccCcCCEEECCCC-ccccccCcchh-----cccCCCCCEEECCCCc-CCcCCHHHhcCCccCCeEECCCCcCCCcccc
Confidence              5888888888876 333332  211     2238889999998884 433445444   455555 666543221   


Q ss_pred             -cCCCCccccEEEecCCCcceec--CCCCCCCccEEEEeccEeeeecCCCCccCCCCCCcCCCCCCCCCeEEecCC----
Q 048322          319 -SLSSYPRLCRLEVDECKELVCR--TPIDSKLIKFMTISNSSLDMIGCKGMLYDSQAGSSLPKPMTTTNVLEFGKL----  391 (498)
Q Consensus       319 -~~~~l~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~l~~lp~~l~~L~~L~i~~~----  391 (498)
                       .+..+++|++|++++|......  ....+++|++|++++|.+.....+       ....+ ..+++|+.|++++|    
T Consensus       419 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-------~~~~~-~~l~~L~~L~Ls~n~l~~  490 (606)
T 3t6q_A          419 SPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQ-------KTNSL-QTLGRLEILVLSFCDLSS  490 (606)
T ss_dssp             CTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEEC-------SSCGG-GGCTTCCEEECTTSCCCE
T ss_pred             hhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccc-------cchhh-ccCCCccEEECCCCccCc
Confidence             2445788888998888765432  234578889999888754321110       00001 23488999999998    


Q ss_pred             ----CCCCCCCccEEEEcCCCCCCCccccCCCCccCCCCCCcCeEeeecCCCCCcCCCC--CccccccceeeccCc
Q 048322          392 ----LEPGFQILETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPNLTLFPEV--GLPSSLLDLYVNNCP  461 (498)
Q Consensus       392 ----~~~~lp~L~~L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~~l~~lp~~--~~~~sL~~L~i~~c~  461 (498)
                          .++.+++|+.|+++++. ++..     .|..+..+++| +|++++| .+..+|..  ...++|+.|++++||
T Consensus       491 ~~~~~~~~l~~L~~L~Ls~N~-l~~~-----~~~~l~~l~~L-~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~  558 (606)
T 3t6q_A          491 IDQHAFTSLKMMNHVDLSHNR-LTSS-----SIEALSHLKGI-YLNLASN-HISIILPSLLPILSQQRTINLRQNP  558 (606)
T ss_dssp             ECTTTTTTCTTCCEEECCSSC-CCGG-----GGGGGTTCCSC-EEECCSS-CCCCCCGGGHHHHHTSSEEECTTCC
T ss_pred             cChhhhccccCCCEEECCCCc-cCcC-----ChhHhCccccc-EEECcCC-cccccCHhhcccCCCCCEEeCCCCC
Confidence                35678889999999864 4332     27788899999 9999996 56666554  334789999999876

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.72  E-value=5.1e-17  Score=157.56  Aligned_cols=226  Identities=18%  Similarity=0.190  Sum_probs=169.4

Q ss_pred             ccCCcccEEEEecCCCCCCcChhhHHHhhhcCCCCCCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCC-
Q 048322          139 EKLNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPS-  217 (498)
Q Consensus       139 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~-  217 (498)
                      ...+++.|+|+.+.-          ..++..+..+++|++|+++++....+|..++  .+++|++|++++| .+..+|. 
T Consensus        79 ~~~~l~~L~L~~n~l----------~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~--~l~~L~~L~Ls~n-~l~~lp~~  145 (328)
T 4fcg_A           79 TQPGRVALELRSVPL----------PQFPDQAFRLSHLQHMTIDAAGLMELPDTMQ--QFAGLETLTLARN-PLRALPAS  145 (328)
T ss_dssp             TSTTCCEEEEESSCC----------SSCCSCGGGGTTCSEEEEESSCCCCCCSCGG--GGTTCSEEEEESC-CCCCCCGG
T ss_pred             cccceeEEEccCCCc----------hhcChhhhhCCCCCEEECCCCCccchhHHHh--ccCCCCEEECCCC-ccccCcHH
Confidence            357899999988752          1244556667999999999999999999887  6999999999997 5668886 


Q ss_pred             CCCccccceeeccccccceecCccccCC---CCCCCCCCCceeeccCCCccccccccccCCccccCCCccceeeeccCCC
Q 048322          218 LGLLSSLKHLAVKGLKKLKSIESEVYGE---GFSMPFPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPK  294 (498)
Q Consensus       218 i~~l~~L~~L~l~~~~~l~~i~~~~~~~---~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~  294 (498)
                      ++.+++|++|++++|+.++.+|..+...   +.+..+++|++|+++++ .++.+...      +..+++|++|++++| .
T Consensus       146 l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~lp~~------l~~l~~L~~L~L~~N-~  217 (328)
T 4fcg_A          146 IASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPAS------IANLQNLKSLKIRNS-P  217 (328)
T ss_dssp             GGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE-CCCCCCGG------GGGCTTCCEEEEESS-C
T ss_pred             HhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCC-CcCcchHh------hcCCCCCCEEEccCC-C
Confidence            9999999999999998888888765321   11234899999999886 44433322      233899999999998 4


Q ss_pred             ccccCCCCcchHHHHHHhcccccccCCCCccccEEEecCCCccee-c-CCCCCCCccEEEEeccEeeeecCCCCccCCCC
Q 048322          295 LSGKLPELLPSLEILVSKCEKLVVSLSSYPRLCRLEVDECKELVC-R-TPIDSKLIKFMTISNSSLDMIGCKGMLYDSQA  372 (498)
Q Consensus       295 l~~~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~L~l~~~~~~~~-~-~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~  372 (498)
                      +. .+|.                 .+..+++|++|++++|..... + ....+++|+.|++++|              ..
T Consensus       218 l~-~l~~-----------------~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n--------------~~  265 (328)
T 4fcg_A          218 LS-ALGP-----------------AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDC--------------SN  265 (328)
T ss_dssp             CC-CCCG-----------------GGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTC--------------TT
T ss_pred             CC-cCch-----------------hhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCC--------------Cc
Confidence            54 5554                 445678999999999876652 2 2345778888888654              23


Q ss_pred             CCcCCCCCCCCCeEEecCCCCCCCCCccEEEEcCCCCCCCccccCCCCccCCCCCCcCeEeeec
Q 048322          373 GSSLPKPMTTTNVLEFGKLLEPGFQILETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWN  436 (498)
Q Consensus       373 l~~lp~~l~~L~~L~i~~~~~~~lp~L~~L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~  436 (498)
                      +..+|..             ++.+++|+.|++++|+.+..+      |.++..+++|+.+.+..
T Consensus       266 ~~~~p~~-------------~~~l~~L~~L~L~~n~~~~~i------P~~l~~L~~L~~l~l~~  310 (328)
T 4fcg_A          266 LLTLPLD-------------IHRLTQLEKLDLRGCVNLSRL------PSLIAQLPANCIILVPP  310 (328)
T ss_dssp             CCBCCTT-------------GGGCTTCCEEECTTCTTCCCC------CGGGGGSCTTCEEECCG
T ss_pred             hhhcchh-------------hhcCCCCCEEeCCCCCchhhc------cHHHhhccCceEEeCCH
Confidence            3344433             245677889999998877654      99999999999998875

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.71  E-value=2.5e-17  Score=170.44  Aligned_cols=132  Identities=13%  Similarity=0.123  Sum_probs=82.2

Q ss_pred             CCccccEEEecCCCcce--ecCCCCCCCccEEEEeccEeee--------ecCCCCc---cCCCCCCc-CCC----CCCCC
Q 048322          322 SYPRLCRLEVDECKELV--CRTPIDSKLIKFMTISNSSLDM--------IGCKGML---YDSQAGSS-LPK----PMTTT  383 (498)
Q Consensus       322 ~l~~L~~L~l~~~~~~~--~~~~~~~~~L~~L~l~~~~l~~--------~~~~~l~---~~~~~l~~-lp~----~l~~L  383 (498)
                      .+++|++|++++|....  ......+++|+.|++++|.+..        ..++.+.   .....+.. +|.    .+++|
T Consensus       322 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L  401 (520)
T 2z7x_B          322 KISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSL  401 (520)
T ss_dssp             SCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTC
T ss_pred             hCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccC
Confidence            36667777777765544  2233446677777777764432        2233333   22223333 442    23677


Q ss_pred             CeEEecCCCC-----CCC-CCccEEEEcCCCCCCCccccCCCCccCCCCCCcCeEeeecCCCCCcCCCC--Cccccccce
Q 048322          384 NVLEFGKLLE-----PGF-QILETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPNLTLFPEV--GLPSSLLDL  455 (498)
Q Consensus       384 ~~L~i~~~~~-----~~l-p~L~~L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~~l~~lp~~--~~~~sL~~L  455 (498)
                      +.|++++|.+     ..+ ++|+.|++++| .++.      +|.++..+++|++|++++| .++.+|..  ...++|++|
T Consensus       402 ~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N-~l~~------ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L  473 (520)
T 2z7x_B          402 LSLNMSSNILTDTIFRCLPPRIKVLDLHSN-KIKS------IPKQVVKLEALQELNVASN-QLKSVPDGIFDRLTSLQKI  473 (520)
T ss_dssp             CEEECCSSCCCGGGGGSCCTTCCEEECCSS-CCCC------CCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred             CEEECcCCCCCcchhhhhcccCCEEECCCC-cccc------cchhhhcCCCCCEEECCCC-cCCccCHHHhccCCcccEE
Confidence            7777777722     223 46888888775 3433      4888888999999999986 67788875  234789999


Q ss_pred             eeccCc
Q 048322          456 YVNNCP  461 (498)
Q Consensus       456 ~i~~c~  461 (498)
                      +++++|
T Consensus       474 ~l~~N~  479 (520)
T 2z7x_B          474 WLHTNP  479 (520)
T ss_dssp             ECCSSC
T ss_pred             ECcCCC
Confidence            998765

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.71  E-value=1.2e-17  Score=173.89  Aligned_cols=88  Identities=16%  Similarity=0.164  Sum_probs=60.4

Q ss_pred             HhhcccCCcccEEEEecCCCCCCcChhhHHHhhhcCCCCCCCceEEEeecCCCC--CCccccCCCCCCccEEeEeCCCCC
Q 048322          135 AALCEKLNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGAR--FPLWIGDPLFSKIEFLELENCNNC  212 (498)
Q Consensus       135 ~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~--~p~~~~~~~l~~L~~L~l~~c~~~  212 (498)
                      ..+.++.+|++|+|+++.-..      .   ....+..+++|++|+++++....  .|..+.  .+++|++|++++|..+
T Consensus        68 ~~~~~l~~L~~L~Ls~n~l~~------~---~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~--~l~~L~~L~L~~n~~~  136 (549)
T 2z81_A           68 DAFYSLGSLEHLDLSDNHLSS------L---SSSWFGPLSSLKYLNLMGNPYQTLGVTSLFP--NLTNLQTLRIGNVETF  136 (549)
T ss_dssp             TTTTTCTTCCEEECTTSCCCS------C---CHHHHTTCTTCCEEECTTCCCSSSCSSCSCT--TCTTCCEEEEEESSSC
T ss_pred             hhccccccCCEEECCCCccCc------c---CHHHhccCCCCcEEECCCCcccccchhhhhh--ccCCccEEECCCCccc
Confidence            446678888888887765211      0   11224556888888888887663  355555  5788888888887667


Q ss_pred             CCCCC--CCCccccceeeccccc
Q 048322          213 VSLPS--LGLLSSLKHLAVKGLK  233 (498)
Q Consensus       213 ~~lp~--i~~l~~L~~L~l~~~~  233 (498)
                      +.+|+  ++.+++|++|+++++.
T Consensus       137 ~~~~~~~~~~l~~L~~L~L~~n~  159 (549)
T 2z81_A          137 SEIRRIDFAGLTSLNELEIKALS  159 (549)
T ss_dssp             CEECTTTTTTCCEEEEEEEEETT
T ss_pred             cccCHhhhhcccccCeeeccCCc
Confidence            77763  7788888888888754

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.71  E-value=6.4e-17  Score=163.83  Aligned_cols=254  Identities=22%  Similarity=0.210  Sum_probs=111.4

Q ss_pred             CCCCCCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCCCCCccccceeeccccccceecCccccCCCCCC
Q 048322          170 LQPHKCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPSLGLLSSLKHLAVKGLKKLKSIESEVYGEGFSM  249 (498)
Q Consensus       170 l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~  249 (498)
                      +..+++|++|+++++....+|.++     .+|++|++++| .+..+|.++.+++|++|++++| .+..+|.         
T Consensus       149 ~~~l~~L~~L~l~~N~l~~lp~~~-----~~L~~L~L~~n-~l~~l~~~~~l~~L~~L~l~~N-~l~~l~~---------  212 (454)
T 1jl5_A          149 LQNSSFLKIIDVDNNSLKKLPDLP-----PSLEFIAAGNN-QLEELPELQNLPFLTAIYADNN-SLKKLPD---------  212 (454)
T ss_dssp             CTTCTTCCEEECCSSCCSCCCCCC-----TTCCEEECCSS-CCSSCCCCTTCTTCCEEECCSS-CCSSCCC---------
T ss_pred             cCCCCCCCEEECCCCcCcccCCCc-----ccccEEECcCC-cCCcCccccCCCCCCEEECCCC-cCCcCCC---------
Confidence            344455555555555544444322     24555555554 3444555555555666655553 2333332         


Q ss_pred             CCCCCceeeccCCCccccccccccCCccccCCCccceeeeccCCCccccCCCCcchHHHH-HHhcccccccCCC-Ccccc
Q 048322          250 PFPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPSLEIL-VSKCEKLVVSLSS-YPRLC  327 (498)
Q Consensus       250 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~L-i~~~~~l~~~~~~-l~~L~  327 (498)
                      ..++|++|+++++ .++.+. .      +..+++|++|++++| .++ .+|..+++|+.| +.+|. +. .+|. +++|+
T Consensus       213 ~~~~L~~L~l~~n-~l~~lp-~------~~~l~~L~~L~l~~N-~l~-~l~~~~~~L~~L~l~~N~-l~-~l~~~~~~L~  280 (454)
T 1jl5_A          213 LPLSLESIVAGNN-ILEELP-E------LQNLPFLTTIYADNN-LLK-TLPDLPPSLEALNVRDNY-LT-DLPELPQSLT  280 (454)
T ss_dssp             CCTTCCEEECCSS-CCSSCC-C------CTTCTTCCEEECCSS-CCS-SCCSCCTTCCEEECCSSC-CS-CCCCCCTTCC
T ss_pred             CcCcccEEECcCC-cCCccc-c------cCCCCCCCEEECCCC-cCC-cccccccccCEEECCCCc-cc-ccCcccCcCC
Confidence            1345666666555 333222 1      223677777777776 444 566656666666 65543 22 2333 56777


Q ss_pred             EEEecCCCcceecCCCCCCCccEEEEeccEeeee-cC-CCCc---cCCCCCCcCCCCCCCCCeEEecCCCCC----CCCC
Q 048322          328 RLEVDECKELVCRTPIDSKLIKFMTISNSSLDMI-GC-KGML---YDSQAGSSLPKPMTTTNVLEFGKLLEP----GFQI  398 (498)
Q Consensus       328 ~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~-~~l~---~~~~~l~~lp~~l~~L~~L~i~~~~~~----~lp~  398 (498)
                      +|++++|....++..  +++|+.|++++|.+... .. +.+.   .....+..+|..+++|+.|++++|.+.    .+++
T Consensus       281 ~L~ls~N~l~~l~~~--~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~lp~~~~~L~~L~L~~N~l~~lp~~l~~  358 (454)
T 1jl5_A          281 FLDVSENIFSGLSEL--PPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPPRLERLIASFNHLAEVPELPQN  358 (454)
T ss_dssp             EEECCSSCCSEESCC--CTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTT
T ss_pred             EEECcCCccCcccCc--CCcCCEEECcCCcCCcccCCcCcCCEEECCCCccccccccCCcCCEEECCCCccccccchhhh
Confidence            777777765544322  35677777776643321 11 1111   222344455555566666666666111    2334


Q ss_pred             ccEEEEcCCCCCCCccccCCCCccCCCC-------------CCcCeEeeecCCCCCcCCCCCccccccceeeccC
Q 048322          399 LETLVIGNSEQLKPWRQGRGLSMGFQRL-------------TSLQSLKIWNCPNLTLFPEVGLPSSLLDLYVNNC  460 (498)
Q Consensus       399 L~~L~l~~c~~L~~l~~l~~l~~~l~~l-------------~~L~~L~l~~c~~l~~lp~~~~~~sL~~L~i~~c  460 (498)
                      |++|+++++ .+++++   .+|.++..+             ++|++|+++++ .+..+|.  .|++|+.|.+.+|
T Consensus       359 L~~L~L~~N-~l~~l~---~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N-~l~~~~~--iP~sl~~L~~~~~  426 (454)
T 1jl5_A          359 LKQLHVEYN-PLREFP---DIPESVEDLRMNSHLAEVPELPQNLKQLHVETN-PLREFPD--IPESVEDLRMNSE  426 (454)
T ss_dssp             CCEEECCSS-CCSSCC---CCCTTCCEEECCC-------------------------------------------
T ss_pred             ccEEECCCC-CCCcCC---CChHHHHhhhhcccccccccccCcCCEEECCCC-cCCcccc--chhhHhheeCcCc
Confidence            666666653 232211   125555544             55666666653 3333322  3455666665554

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.70  E-value=6.7e-17  Score=170.42  Aligned_cols=40  Identities=18%  Similarity=0.074  Sum_probs=24.1

Q ss_pred             cCCCCCCcCeEeeecCCCCCcCCCC-CccccccceeeccCc
Q 048322          422 GFQRLTSLQSLKIWNCPNLTLFPEV-GLPSSLLDLYVNNCP  461 (498)
Q Consensus       422 ~l~~l~~L~~L~l~~c~~l~~lp~~-~~~~sL~~L~i~~c~  461 (498)
                      .+..+++|++|++++|..-...|.. +.+++|++|++++|+
T Consensus       420 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~  460 (606)
T 3t6q_A          420 PFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNH  460 (606)
T ss_dssp             TTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCB
T ss_pred             hhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCC
Confidence            3666777777777776432222322 334677777777775

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.70  E-value=4.6e-16  Score=157.53  Aligned_cols=174  Identities=21%  Similarity=0.219  Sum_probs=95.4

Q ss_pred             CCcccEEEEecCCCCCCcChhhHHHhhhcCCCCCCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCCCCC
Q 048322          141 LNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPSLGL  220 (498)
Q Consensus       141 ~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~i~~  220 (498)
                      ++|+.|+++++.-..          +.+.   +++|++|+++++....+|..     .++|++|++++| .++.+|.++.
T Consensus        91 ~~L~~L~l~~n~l~~----------lp~~---~~~L~~L~l~~n~l~~l~~~-----~~~L~~L~L~~n-~l~~lp~~~~  151 (454)
T 1jl5_A           91 PHLESLVASCNSLTE----------LPEL---PQSLKSLLVDNNNLKALSDL-----PPLLEYLGVSNN-QLEKLPELQN  151 (454)
T ss_dssp             TTCSEEECCSSCCSS----------CCCC---CTTCCEEECCSSCCSCCCSC-----CTTCCEEECCSS-CCSSCCCCTT
T ss_pred             CCCCEEEccCCcCCc----------cccc---cCCCcEEECCCCccCcccCC-----CCCCCEEECcCC-CCCCCcccCC
Confidence            467777776664210          1111   25677777777766655532     256777777775 4556777777


Q ss_pred             ccccceeeccccccceecCccccCCCCCCCCCCCceeeccCCCccccccccccCCccccCCCccceeeeccCCCccccCC
Q 048322          221 LSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLP  300 (498)
Q Consensus       221 l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp  300 (498)
                      +++|++|+++++ .++.+|.         .+++|++|+++++ .++.+. +      +..+++|++|++++| .++ .+|
T Consensus       152 l~~L~~L~l~~N-~l~~lp~---------~~~~L~~L~L~~n-~l~~l~-~------~~~l~~L~~L~l~~N-~l~-~l~  211 (454)
T 1jl5_A          152 SSFLKIIDVDNN-SLKKLPD---------LPPSLEFIAAGNN-QLEELP-E------LQNLPFLTAIYADNN-SLK-KLP  211 (454)
T ss_dssp             CTTCCEEECCSS-CCSCCCC---------CCTTCCEEECCSS-CCSSCC-C------CTTCTTCCEEECCSS-CCS-SCC
T ss_pred             CCCCCEEECCCC-cCcccCC---------CcccccEEECcCC-cCCcCc-c------ccCCCCCCEEECCCC-cCC-cCC
Confidence            777777777775 3555543         2346777777665 333321 1      122666666666665 343 455


Q ss_pred             CCcchHHHH-HHhccc--ccccCCCCccccEEEecCCCcceecCCCCCCCccEEEEecc
Q 048322          301 ELLPSLEIL-VSKCEK--LVVSLSSYPRLCRLEVDECKELVCRTPIDSKLIKFMTISNS  356 (498)
Q Consensus       301 ~~l~~L~~L-i~~~~~--l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~  356 (498)
                      ...++|+.| +.+|.-  +. .+..+++|++|++++|....++.  .+++|+.|++++|
T Consensus       212 ~~~~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~l~~--~~~~L~~L~l~~N  267 (454)
T 1jl5_A          212 DLPLSLESIVAGNNILEELP-ELQNLPFLTTIYADNNLLKTLPD--LPPSLEALNVRDN  267 (454)
T ss_dssp             CCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCS--CCTTCCEEECCSS
T ss_pred             CCcCcccEEECcCCcCCccc-ccCCCCCCCEEECCCCcCCcccc--cccccCEEECCCC
Confidence            555555555 554421  11 12235666666666655443332  1345555555554

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.70  E-value=6.1e-17  Score=169.06  Aligned_cols=295  Identities=13%  Similarity=0.147  Sum_probs=168.6

Q ss_pred             HhhcccCCcccEEEEecCCCCCCcChhhHHHhhhcCCCCCCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCC
Q 048322          135 AALCEKLNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVS  214 (498)
Q Consensus       135 ~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~  214 (498)
                      ..+.++++|++|+|+.+.-.         ....+.+..+++|++|+++++....+|..    .+++|++|++++|. +..
T Consensus        70 ~~~~~l~~L~~L~Ls~N~l~---------~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~----~l~~L~~L~Ls~N~-l~~  135 (562)
T 3a79_B           70 PDISFLSELRVLRLSHNRIR---------SLDFHVFLFNQDLEYLDVSHNRLQNISCC----PMASLRHLDLSFND-FDV  135 (562)
T ss_dssp             GGTTTCTTCCEEECCSCCCC---------EECTTTTTTCTTCCEEECTTSCCCEECSC----CCTTCSEEECCSSC-CSB
T ss_pred             hhhccCCCccEEECCCCCCC---------cCCHHHhCCCCCCCEEECCCCcCCccCcc----ccccCCEEECCCCC-ccc
Confidence            45677888888888777410         01123455668888888888887777765    37888888888864 555


Q ss_pred             CC--C-CCCccccceeeccccccceecCccccCCCCCCCCCCC--ceeeccCCCcc-cccccccc-C-------------
Q 048322          215 LP--S-LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSL--KILRFENLPEW-WHWDTDIK-G-------------  274 (498)
Q Consensus       215 lp--~-i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L--~~L~l~~~~~l-~~~~~~~~-~-------------  274 (498)
                      +|  . ++.+++|++|+++++. +...+  +      ..+++|  +.|+++++.-. ....++.. .             
T Consensus       136 l~~p~~~~~l~~L~~L~L~~n~-l~~~~--~------~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n  206 (562)
T 3a79_B          136 LPVCKEFGNLTKLTFLGLSAAK-FRQLD--L------LPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPN  206 (562)
T ss_dssp             CCCCGGGGGCTTCCEEEEECSB-CCTTT--T------GGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSS
T ss_pred             cCchHhhcccCcccEEecCCCc-cccCc--h------hhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCc
Confidence            44  3 7888888888888742 33211  1      123444  66665544210 00000000 0             


Q ss_pred             -------Ccccc-------------------------------------------------------CCCccceeeeccC
Q 048322          275 -------NVHVD-------------------------------------------------------IFPRLQELSVVKC  292 (498)
Q Consensus       275 -------~~~~~-------------------------------------------------------~l~~L~~L~l~~c  292 (498)
                             .....                                                       ..++|++|++++|
T Consensus       207 ~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n  286 (562)
T 3a79_B          207 SLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNL  286 (562)
T ss_dssp             SCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEE
T ss_pred             cchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEecc
Confidence                   00000                                                       0125666666665


Q ss_pred             CCccccCCCCc-----chHHHH------------------------------HHhcccccccC-CCCccccEEEecCCCc
Q 048322          293 PKLSGKLPELL-----PSLEIL------------------------------VSKCEKLVVSL-SSYPRLCRLEVDECKE  336 (498)
Q Consensus       293 ~~l~~~lp~~l-----~~L~~L------------------------------i~~~~~l~~~~-~~l~~L~~L~l~~~~~  336 (498)
                       .+.+.+|..+     ++|+.|                              +.++.-....+ ..+++|++|++++|..
T Consensus       287 -~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l  365 (562)
T 3a79_B          287 -TITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVF  365 (562)
T ss_dssp             -EECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCC
T ss_pred             -EeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCcc
Confidence             3334566543     222222                              11111111011 2366777777777755


Q ss_pred             ce--ecCCCCCCCccEEEEeccEeee--------ecCCCCc---cCCCCCCc-CCC----CCCCCCeEEecCCCC-----
Q 048322          337 LV--CRTPIDSKLIKFMTISNSSLDM--------IGCKGML---YDSQAGSS-LPK----PMTTTNVLEFGKLLE-----  393 (498)
Q Consensus       337 ~~--~~~~~~~~~L~~L~l~~~~l~~--------~~~~~l~---~~~~~l~~-lp~----~l~~L~~L~i~~~~~-----  393 (498)
                      ..  ......+++|+.|++++|.+..        ..++.+.   .....+.. +|.    .+++|+.|++++|.+     
T Consensus       366 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  445 (562)
T 3a79_B          366 TDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVF  445 (562)
T ss_dssp             CTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGG
T ss_pred             ccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchh
Confidence            44  1223446777777777774442        1222222   22223333 443    237788888888722     


Q ss_pred             CCC-CCccEEEEcCCCCCCCccccCCCCccCCCCCCcCeEeeecCCCCCcCCCC--CccccccceeeccCc
Q 048322          394 PGF-QILETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPNLTLFPEV--GLPSSLLDLYVNNCP  461 (498)
Q Consensus       394 ~~l-p~L~~L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~~l~~lp~~--~~~~sL~~L~i~~c~  461 (498)
                      ..+ ++|+.|+++++ .++.      +|.++..+++|++|++++| .++.+|..  ...++|+.|+++++|
T Consensus       446 ~~l~~~L~~L~L~~N-~l~~------ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~  508 (562)
T 3a79_B          446 RCLPPKVKVLDLHNN-RIMS------IPKDVTHLQALQELNVASN-QLKSVPDGVFDRLTSLQYIWLHDNP  508 (562)
T ss_dssp             SSCCTTCSEEECCSS-CCCC------CCTTTTSSCCCSEEECCSS-CCCCCCTTSTTTCTTCCCEECCSCC
T ss_pred             hhhcCcCCEEECCCC-cCcc------cChhhcCCCCCCEEECCCC-CCCCCCHHHHhcCCCCCEEEecCCC
Confidence            234 46888888875 4543      4888889999999999985 77888874  345789999998765

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.69  E-value=8.7e-17  Score=163.90  Aligned_cols=283  Identities=13%  Similarity=0.122  Sum_probs=146.4

Q ss_pred             hcccCCcccEEEEecCCCCCCcChhhHHHhhhcCCCCCCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCC
Q 048322          137 LCEKLNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLP  216 (498)
Q Consensus       137 l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp  216 (498)
                      +.++.+|++|+++.+.-..          +. .+..+++|++|+++++....+|. +.  .+++|++|++++| .+..+|
T Consensus        86 ~~~l~~L~~L~l~~n~l~~----------~~-~~~~l~~L~~L~L~~n~l~~~~~-~~--~l~~L~~L~l~~n-~l~~~~  150 (466)
T 1o6v_A           86 LKNLTKLVDILMNNNQIAD----------IT-PLANLTNLTGLTLFNNQITDIDP-LK--NLTNLNRLELSSN-TISDIS  150 (466)
T ss_dssp             GTTCTTCCEEECCSSCCCC----------CG-GGTTCTTCCEEECCSSCCCCCGG-GT--TCTTCSEEEEEEE-EECCCG
T ss_pred             hhccccCCEEECCCCcccc----------Ch-hhcCCCCCCEEECCCCCCCCChH-Hc--CCCCCCEEECCCC-ccCCCh
Confidence            5667777777776654210          01 14455777777777776666654 33  4677777777765 345555


Q ss_pred             CCCCccccceeeccccccceecCccccCCCCCCCCCCCceeeccCCCccccccccccCCccccCCCccceeeeccCCCcc
Q 048322          217 SLGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLS  296 (498)
Q Consensus       217 ~i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~  296 (498)
                      .++.+++|++|.+.+  .+..++.       +..+++|+.|+++++. +..+.       .+..+++|++|++++|. +.
T Consensus       151 ~~~~l~~L~~L~l~~--~~~~~~~-------~~~l~~L~~L~l~~n~-l~~~~-------~l~~l~~L~~L~l~~n~-l~  212 (466)
T 1o6v_A          151 ALSGLTSLQQLSFGN--QVTDLKP-------LANLTTLERLDISSNK-VSDIS-------VLAKLTNLESLIATNNQ-IS  212 (466)
T ss_dssp             GGTTCTTCSEEEEEE--SCCCCGG-------GTTCTTCCEEECCSSC-CCCCG-------GGGGCTTCSEEECCSSC-CC
T ss_pred             hhccCCcccEeecCC--cccCchh-------hccCCCCCEEECcCCc-CCCCh-------hhccCCCCCEEEecCCc-cc
Confidence            566666666666642  2222221       1235666666665542 22221       01125555555555542 22


Q ss_pred             ccCC-CCcchHHHH-HHhccccc-ccCCCCccccEEEecCCCcceecCCCCCCCccEEEEeccEeee----ecCCCCc--
Q 048322          297 GKLP-ELLPSLEIL-VSKCEKLV-VSLSSYPRLCRLEVDECKELVCRTPIDSKLIKFMTISNSSLDM----IGCKGML--  367 (498)
Q Consensus       297 ~~lp-~~l~~L~~L-i~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~----~~~~~l~--  367 (498)
                      +..| ..+++|+.| +.+|.--. ..+..+++|++|++++|.....+....+++|+.|++++|.+..    ..++.|.  
T Consensus       213 ~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L  292 (466)
T 1o6v_A          213 DITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNL  292 (466)
T ss_dssp             CCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEE
T ss_pred             ccccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCccccccCCCccCeE
Confidence            1111 122333333 33332110 0222355555555555554443334445555555555553221    1111111  


Q ss_pred             -cCCCCCCcCC--CCCCCCCeEEecCC------CCCCCCCccEEEEcCCCCCCCccccCCCCccCCCCCCcCeEeeecCC
Q 048322          368 -YDSQAGSSLP--KPMTTTNVLEFGKL------LEPGFQILETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCP  438 (498)
Q Consensus       368 -~~~~~l~~lp--~~l~~L~~L~i~~~------~~~~lp~L~~L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~  438 (498)
                       .....+..++  ..+++|+.|++++|      +...+++|+.|++++| .++.       ...+..+++|++|++++|.
T Consensus       293 ~L~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n-~l~~-------~~~l~~l~~L~~L~l~~n~  364 (466)
T 1o6v_A          293 ELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNN-KVSD-------VSSLANLTNINWLSAGHNQ  364 (466)
T ss_dssp             ECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSS-CCCC-------CGGGTTCTTCCEEECCSSC
T ss_pred             EcCCCcccCchhhcCCCCCCEEECcCCcCCCchhhccCccCCEeECCCC-ccCC-------chhhccCCCCCEEeCCCCc
Confidence             0111222222  24477888888887      3445677888888776 3443       2356778888888888874


Q ss_pred             CCCcCCCCCccccccceeeccCc
Q 048322          439 NLTLFPEVGLPSSLLDLYVNNCP  461 (498)
Q Consensus       439 ~l~~lp~~~~~~sL~~L~i~~c~  461 (498)
                      . ..++....+++|+.|++++|+
T Consensus       365 l-~~~~~~~~l~~L~~L~l~~n~  386 (466)
T 1o6v_A          365 I-SDLTPLANLTRITQLGLNDQA  386 (466)
T ss_dssp             C-CBCGGGTTCTTCCEEECCCEE
T ss_pred             c-CccchhhcCCCCCEEeccCCc
Confidence            4 443334445788888888875

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.69  E-value=1e-15  Score=148.71  Aligned_cols=234  Identities=14%  Similarity=0.132  Sum_probs=160.4

Q ss_pred             CCCceEEEeecCCCCCCc-cccCCCCCCccEEeEeCCCCCCCC-CC-CCCccccceeeccccccceecCccccCCCCCCC
Q 048322          174 KCIKKVAIRNYGGARFPL-WIGDPLFSKIEFLELENCNNCVSL-PS-LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMP  250 (498)
Q Consensus       174 ~~L~~L~l~~~~~~~~p~-~~~~~~l~~L~~L~l~~c~~~~~l-p~-i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~  250 (498)
                      +++++|+++++....+|. .+.  .+++|++|++++|. +..+ |. ++.+++|++|+++++ .++.+|..+        
T Consensus        52 ~~l~~L~L~~n~i~~~~~~~~~--~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n-~l~~l~~~~--------  119 (330)
T 1xku_A           52 PDTALLDLQNNKITEIKDGDFK--NLKNLHTLILINNK-ISKISPGAFAPLVKLERLYLSKN-QLKELPEKM--------  119 (330)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTT--TCTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSS-CCSBCCSSC--------
T ss_pred             CCCeEEECCCCcCCEeChhhhc--cCCCCCEEECCCCc-CCeeCHHHhcCCCCCCEEECCCC-cCCccChhh--------
Confidence            678888888888777765 454  58888888888864 4444 54 888888888888875 466666532        


Q ss_pred             CCCCceeeccCCCccccccccccCCccccCCCccceeeeccCCCcc-ccCCCCcchHHHHHHhcccccccCCCCccccEE
Q 048322          251 FPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLS-GKLPELLPSLEILVSKCEKLVVSLSSYPRLCRL  329 (498)
Q Consensus       251 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~-~~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~L  329 (498)
                      +++|++|+++++ .+..+.+...     ..+++|++|++++|..-. +..+.                 .+..+++|++|
T Consensus       120 ~~~L~~L~l~~n-~l~~~~~~~~-----~~l~~L~~L~l~~n~l~~~~~~~~-----------------~~~~l~~L~~L  176 (330)
T 1xku_A          120 PKTLQELRVHEN-EITKVRKSVF-----NGLNQMIVVELGTNPLKSSGIENG-----------------AFQGMKKLSYI  176 (330)
T ss_dssp             CTTCCEEECCSS-CCCBBCHHHH-----TTCTTCCEEECCSSCCCGGGBCTT-----------------GGGGCTTCCEE
T ss_pred             cccccEEECCCC-cccccCHhHh-----cCCccccEEECCCCcCCccCcChh-----------------hccCCCCcCEE
Confidence            468888888776 3444432222     227888888888773321 12222                 34457888888


Q ss_pred             EecCCCcceecCCCCCCCccEEEEeccEeeeecCCCCccCCCCCCcCCCCCCCCCeEEecCC--------CCCCCCCccE
Q 048322          330 EVDECKELVCRTPIDSKLIKFMTISNSSLDMIGCKGMLYDSQAGSSLPKPMTTTNVLEFGKL--------LEPGFQILET  401 (498)
Q Consensus       330 ~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~l~~lp~~l~~L~~L~i~~~--------~~~~lp~L~~  401 (498)
                      ++++|....++... +++|++|++++|.+......          .+ ..+++|+.|++++|        .+..+++|+.
T Consensus       177 ~l~~n~l~~l~~~~-~~~L~~L~l~~n~l~~~~~~----------~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  244 (330)
T 1xku_A          177 RIADTNITTIPQGL-PPSLTELHLDGNKITKVDAA----------SL-KGLNNLAKLGLSFNSISAVDNGSLANTPHLRE  244 (330)
T ss_dssp             ECCSSCCCSCCSSC-CTTCSEEECTTSCCCEECTG----------GG-TTCTTCCEEECCSSCCCEECTTTGGGSTTCCE
T ss_pred             ECCCCccccCCccc-cccCCEEECCCCcCCccCHH----------Hh-cCCCCCCEEECCCCcCceeChhhccCCCCCCE
Confidence            88888766655433 37889999887743321110          01 23478889999888        2446778999


Q ss_pred             EEEcCCCCCCCccccCCCCccCCCCCCcCeEeeecCCCCCcCCCCCc--------cccccceeeccCch
Q 048322          402 LVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPNLTLFPEVGL--------PSSLLDLYVNNCPR  462 (498)
Q Consensus       402 L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~~l~~lp~~~~--------~~sL~~L~i~~c~~  462 (498)
                      |+++++ .++.      +|.++..+++|++|++++| .++.+|...+        .++|+.|++.++|-
T Consensus       245 L~L~~N-~l~~------lp~~l~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~  305 (330)
T 1xku_A          245 LHLNNN-KLVK------VPGGLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNPV  305 (330)
T ss_dssp             EECCSS-CCSS------CCTTTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred             EECCCC-cCcc------CChhhccCCCcCEEECCCC-cCCccChhhcCCcccccccccccceEeecCcc
Confidence            999986 4543      3888999999999999985 6777775432        26788899998873

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.69  E-value=6.8e-17  Score=169.00  Aligned_cols=102  Identities=19%  Similarity=0.200  Sum_probs=65.4

Q ss_pred             CCCCCeEEecCC--------CCCCCCCccEEEEcCCCCCCCccccCCCCccCCCCCCcCeEeeecCCCCCcC-CCC-Ccc
Q 048322          380 MTTTNVLEFGKL--------LEPGFQILETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPNLTLF-PEV-GLP  449 (498)
Q Consensus       380 l~~L~~L~i~~~--------~~~~lp~L~~L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l-p~~-~~~  449 (498)
                      +++|+.|++++|        .+.++++|++|++++|.-...     .+|..+..+++|++|++++| .+..+ |.. ...
T Consensus       420 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-----~~p~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l  493 (570)
T 2z63_A          420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN-----FLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSL  493 (570)
T ss_dssp             CTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGG-----EECSCCTTCTTCCEEECTTS-CCCEECTTTTTTC
T ss_pred             CCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccc-----cchhhhhcccCCCEEECCCC-ccccCChhhhhcc
Confidence            367777777777        245567788888777642110     13778888999999999987 45555 433 445


Q ss_pred             ccccceeeccCchhHhhhccCCCCCCCCcCCCCeEEECceEee
Q 048322          450 SSLLDLYVNNCPRLKKVCKRDQGKEWPKIAHIPWVVIDGKFIY  492 (498)
Q Consensus       450 ~sL~~L~i~~c~~l~~~~~~~~~~~~~~i~hi~~~~~~~~~~~  492 (498)
                      ++|++|++++|. +..    .....+....++..+++.+..+.
T Consensus       494 ~~L~~L~l~~n~-l~~----~~~~~~~~l~~L~~L~l~~N~~~  531 (570)
T 2z63_A          494 SSLQVLNMASNQ-LKS----VPDGIFDRLTSLQKIWLHTNPWD  531 (570)
T ss_dssp             TTCCEEECCSSC-CSC----CCTTTTTTCTTCCEEECCSSCBC
T ss_pred             cCCCEEeCCCCc-CCC----CCHHHhhcccCCcEEEecCCccc
Confidence            789999999883 221    11122345567777787765443

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.69  E-value=8.8e-16  Score=155.95  Aligned_cols=318  Identities=14%  Similarity=0.075  Sum_probs=187.8

Q ss_pred             CCcccEEEEecCCCCCCcChhhHHHhhhcCCCCCCCceEEEeecCCC-CC-CccccCCCCCCccEEeEeCCCCCCCCCC-
Q 048322          141 LNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGA-RF-PLWIGDPLFSKIEFLELENCNNCVSLPS-  217 (498)
Q Consensus       141 ~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~-~~-p~~~~~~~l~~L~~L~l~~c~~~~~lp~-  217 (498)
                      +++++|+|+.+.-         .......+..+++|++|+++++... .+ |..+.  .+++|++|++++|......|. 
T Consensus        30 ~~l~~L~Ls~n~i---------~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~   98 (455)
T 3v47_A           30 AHVNYVDLSLNSI---------AELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFR--GLSSLIILKLDYNQFLQLETGA   98 (455)
T ss_dssp             TTCCEEECCSSCC---------CEECTTTTSSCTTCCEEECCCCSTTCEECTTTTT--TCTTCCEEECTTCTTCEECTTT
T ss_pred             CccCEEEecCCcc---------CcCChhHhccCccccEEECcCCcccceECccccc--ccccCCEEeCCCCccCccChhh
Confidence            6899999987752         0112345667799999999998764 33 44555  589999999999754444454 


Q ss_pred             CCCccccceeecccccccee-cCccccCCCCCCCCCCCceeeccCCCccccccccccCCccccCCCccceeeeccCCCcc
Q 048322          218 LGLLSSLKHLAVKGLKKLKS-IESEVYGEGFSMPFPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLS  296 (498)
Q Consensus       218 i~~l~~L~~L~l~~~~~l~~-i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~  296 (498)
                      ++.+++|++|++++|. +.. ++..    ..+..+++|++|+++++ .+....+..    .+..+++|++|++++| .+.
T Consensus        99 ~~~l~~L~~L~L~~n~-l~~~~~~~----~~~~~l~~L~~L~L~~n-~l~~~~~~~----~~~~l~~L~~L~L~~n-~l~  167 (455)
T 3v47_A           99 FNGLANLEVLTLTQCN-LDGAVLSG----NFFKPLTSLEMLVLRDN-NIKKIQPAS----FFLNMRRFHVLDLTFN-KVK  167 (455)
T ss_dssp             TTTCTTCCEEECTTSC-CBTHHHHS----STTTTCTTCCEEECCSS-BCCSCCCCG----GGGGCTTCCEEECTTC-CBS
T ss_pred             ccCcccCCEEeCCCCC-CCccccCc----ccccCcccCCEEECCCC-ccCccCccc----ccCCCCcccEEeCCCC-ccc
Confidence            8999999999999874 433 2221    11235899999999887 344443221    1223899999999988 444


Q ss_pred             ccCCCCcchH-----HHH-HHhcccccc-----------cCCCCccccEEEecCCCccee-----cCCCCCCCccEEEEe
Q 048322          297 GKLPELLPSL-----EIL-VSKCEKLVV-----------SLSSYPRLCRLEVDECKELVC-----RTPIDSKLIKFMTIS  354 (498)
Q Consensus       297 ~~lp~~l~~L-----~~L-i~~~~~l~~-----------~~~~l~~L~~L~l~~~~~~~~-----~~~~~~~~L~~L~l~  354 (498)
                      +..|..+..+     +.| +..+.-...           .+..+++|++|++++|.....     ......++|+.|+++
T Consensus       168 ~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~  247 (455)
T 3v47_A          168 SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILS  247 (455)
T ss_dssp             CCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECT
T ss_pred             ccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeec
Confidence            4556555433     333 333322110           112347788888888854321     011112344444444


Q ss_pred             ccEeeeecC------------------CCCc---cCCCCCCcC-C---CCCCCCCeEEecCC--------CCCCCCCccE
Q 048322          355 NSSLDMIGC------------------KGML---YDSQAGSSL-P---KPMTTTNVLEFGKL--------LEPGFQILET  401 (498)
Q Consensus       355 ~~~l~~~~~------------------~~l~---~~~~~l~~l-p---~~l~~L~~L~i~~~--------~~~~lp~L~~  401 (498)
                      +|.......                  +.+.   .....+..+ |   ..+++|+.|++++|        .+..+++|++
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  327 (455)
T 3v47_A          248 NSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLK  327 (455)
T ss_dssp             TCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred             cccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCE
Confidence            331100000                  0000   000112111 2   23478889999888        3456778999


Q ss_pred             EEEcCCCCCCCccccCCCCccCCCCCCcCeEeeecCCCCCcC-CCC-CccccccceeeccCchhHhhhccCCCCCCCCcC
Q 048322          402 LVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPNLTLF-PEV-GLPSSLLDLYVNNCPRLKKVCKRDQGKEWPKIA  479 (498)
Q Consensus       402 L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l-p~~-~~~~sL~~L~i~~c~~l~~~~~~~~~~~~~~i~  479 (498)
                      |+++++. ++.+     .|..+..+++|++|++++| .+..+ |.. ...++|++|++++|. ++.    .....+....
T Consensus       328 L~Ls~N~-l~~~-----~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~----~~~~~~~~l~  395 (455)
T 3v47_A          328 LNLSQNF-LGSI-----DSRMFENLDKLEVLDLSYN-HIRALGDQSFLGLPNLKELALDTNQ-LKS----VPDGIFDRLT  395 (455)
T ss_dssp             EECCSSC-CCEE-----CGGGGTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC-CSC----CCTTTTTTCT
T ss_pred             EECCCCc-cCCc-----ChhHhcCcccCCEEECCCC-cccccChhhccccccccEEECCCCc-ccc----CCHhHhccCC
Confidence            9998863 4332     1567788999999999987 55655 332 345889999999874 221    1111234456


Q ss_pred             CCCeEEECceEee
Q 048322          480 HIPWVVIDGKFIY  492 (498)
Q Consensus       480 hi~~~~~~~~~~~  492 (498)
                      .+..+++.+..+.
T Consensus       396 ~L~~L~l~~N~l~  408 (455)
T 3v47_A          396 SLQKIWLHTNPWD  408 (455)
T ss_dssp             TCCEEECCSSCBC
T ss_pred             cccEEEccCCCcc
Confidence            6777777665443

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.68  E-value=3.4e-16  Score=171.04  Aligned_cols=111  Identities=14%  Similarity=0.062  Sum_probs=66.5

Q ss_pred             HhhcccCCcccEEEEecCCCCCCcChhhHHHh-hhcCCCCCCCceEEEeecCCCCC-CccccCCCCCCccEEeEeCCCCC
Q 048322          135 AALCEKLNLHALTLEWGSQFDNSRDVAVEEHV-LDILQPHKCIKKVAIRNYGGARF-PLWIGDPLFSKIEFLELENCNNC  212 (498)
Q Consensus       135 ~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~-l~~l~~~~~L~~L~l~~~~~~~~-p~~~~~~~l~~L~~L~l~~c~~~  212 (498)
                      ..+.++++|++|+|+++....         .+ .+.+..+++|++|+++++..... |.++.  .+++|++|+|++|...
T Consensus        42 ~~~~~l~~L~~LdLs~n~~~~---------~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~L~Ls~n~l~  110 (844)
T 3j0a_A           42 SSFPFLEQLQLLELGSQYTPL---------TIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQ--GLFHLFELRLYFCGLS  110 (844)
T ss_dssp             SSCSSCCSCSEEEECTTCCCC---------EECTTTTSSCTTCCEEECTTCCCCEECTTSSC--SCSSCCCEECTTCCCS
T ss_pred             hHCcccccCeEEeCCCCCCcc---------ccCHHHhcCCCCCCEEECCCCcCcccCHhHcc--CCcccCEeeCcCCCCC
Confidence            345667777777777663210         11 23455667777777777766554 56666  4777777777776443


Q ss_pred             CCCCC---CCCccccceeeccccccceecCc-cccCCCCCCCCCCCceeeccCC
Q 048322          213 VSLPS---LGLLSSLKHLAVKGLKKLKSIES-EVYGEGFSMPFPSLKILRFENL  262 (498)
Q Consensus       213 ~~lp~---i~~l~~L~~L~l~~~~~l~~i~~-~~~~~~~~~~~~~L~~L~l~~~  262 (498)
                      ..+|.   ++.+++|++|+++++. +..++. ..+     ..+++|++|+++++
T Consensus       111 ~~~~~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~-----~~L~~L~~L~Ls~N  158 (844)
T 3j0a_A          111 DAVLKDGYFRNLKALTRLDLSKNQ-IRSLYLHPSF-----GKLNSLKSIDFSSN  158 (844)
T ss_dssp             SCCSTTCCCSSCSSCCEEEEESCC-CCCCCCCGGG-----GTCSSCCEEEEESS
T ss_pred             cccccCccccccCCCCEEECCCCc-ccccccchhH-----hhCCCCCEEECCCC
Confidence            33443   6777777777777753 333321 122     24777777777654

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.67  E-value=1.3e-15  Score=154.69  Aligned_cols=216  Identities=16%  Similarity=0.107  Sum_probs=120.4

Q ss_pred             CCCceEEEeecCCCCC-CccccCCCCCCccEEeEeCCCCCCCCCC--CCCccccceeeccccccceecCccccCCCCCCC
Q 048322          174 KCIKKVAIRNYGGARF-PLWIGDPLFSKIEFLELENCNNCVSLPS--LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMP  250 (498)
Q Consensus       174 ~~L~~L~l~~~~~~~~-p~~~~~~~l~~L~~L~l~~c~~~~~lp~--i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~  250 (498)
                      +++++|+++++....+ |..+.  .+++|++|+|++| .+..+++  ++.+++|++|+++++ .+..++...++     .
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~--~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~-----~  145 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFR--HLHHLEVLQLGRN-SIRQIEVGAFNGLASLNTLELFDN-WLTVIPSGAFE-----Y  145 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTT--TCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCSBCCTTTSS-----S
T ss_pred             CCccEEECcCCcCceECHHHcC--CCCCCCEEECCCC-ccCCcChhhccCcccCCEEECCCC-cCCccChhhhc-----c
Confidence            4666666666665544 23343  4666777777664 3444442  666667777777664 35555554333     3


Q ss_pred             CCCCceeeccCCCccccccccccCCccccCCCccceeeeccCCCccccCCCCcchHHHHHHhcccccccCCCCccccEEE
Q 048322          251 FPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSYPRLCRLE  330 (498)
Q Consensus       251 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~L~  330 (498)
                      +++|++|+++++ .++.+......     .+++|++|++++|..+. .+|..                .+..+++|++|+
T Consensus       146 l~~L~~L~L~~N-~l~~~~~~~~~-----~l~~L~~L~l~~~~~l~-~i~~~----------------~~~~l~~L~~L~  202 (452)
T 3zyi_A          146 LSKLRELWLRNN-PIESIPSYAFN-----RVPSLMRLDLGELKKLE-YISEG----------------AFEGLFNLKYLN  202 (452)
T ss_dssp             CTTCCEEECCSC-CCCEECTTTTT-----TCTTCCEEECCCCTTCC-EECTT----------------TTTTCTTCCEEE
T ss_pred             cCCCCEEECCCC-CcceeCHhHHh-----cCCcccEEeCCCCCCcc-ccChh----------------hccCCCCCCEEE
Confidence            666677766655 33333322222     26667777776665554 44321                344466667777


Q ss_pred             ecCCCcceecCCCCCCCccEEEEeccEeeeecCCCCccCCCCCCcCCCCCCCCCeEEecCC--------CCCCCCCccEE
Q 048322          331 VDECKELVCRTPIDSKLIKFMTISNSSLDMIGCKGMLYDSQAGSSLPKPMTTTNVLEFGKL--------LEPGFQILETL  402 (498)
Q Consensus       331 l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~l~~lp~~l~~L~~L~i~~~--------~~~~lp~L~~L  402 (498)
                      +++|....++....+++|+.|++++|.+......          .+ ..+++|+.|++++|        .+..+++|+.|
T Consensus       203 L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~----------~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  271 (452)
T 3zyi_A          203 LGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPG----------SF-HGLSSLKKLWVMNSQVSLIERNAFDGLASLVEL  271 (452)
T ss_dssp             CTTSCCSSCCCCTTCTTCCEEECTTSCCSEECGG----------GG-TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             CCCCcccccccccccccccEEECcCCcCcccCcc----------cc-cCccCCCEEEeCCCcCceECHHHhcCCCCCCEE
Confidence            7766665555555566677777666532221100          00 22356666666666        24456667777


Q ss_pred             EEcCCCCCCCccccCCCCccCCCCCCcCeEeeecCC
Q 048322          403 VIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCP  438 (498)
Q Consensus       403 ~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~  438 (498)
                      +++++ .++.+.     +..+..+++|++|++++++
T Consensus       272 ~L~~N-~l~~~~-----~~~~~~l~~L~~L~L~~Np  301 (452)
T 3zyi_A          272 NLAHN-NLSSLP-----HDLFTPLRYLVELHLHHNP  301 (452)
T ss_dssp             ECCSS-CCSCCC-----TTSSTTCTTCCEEECCSSC
T ss_pred             ECCCC-cCCccC-----hHHhccccCCCEEEccCCC
Confidence            77764 344321     3345667777777777654

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.67  E-value=3.7e-15  Score=151.18  Aligned_cols=230  Identities=21%  Similarity=0.265  Sum_probs=172.6

Q ss_pred             CCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCC-C-CCCccccceeeccccccceecCccccCCCCCCCCC
Q 048322          175 CIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLP-S-LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFP  252 (498)
Q Consensus       175 ~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp-~-i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~  252 (498)
                      ....++..+.+...+|..+.    ++|++|+|++| .+..++ . ++.+++|++|+++++ .+..++...+.     .++
T Consensus        55 ~~~~v~c~~~~l~~iP~~~~----~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~-----~l~  123 (452)
T 3zyi_A           55 QFSKVVCTRRGLSEVPQGIP----SNTRYLNLMEN-NIQMIQADTFRHLHHLEVLQLGRN-SIRQIEVGAFN-----GLA  123 (452)
T ss_dssp             SSCEEECCSSCCSSCCSCCC----TTCSEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTT-----TCT
T ss_pred             CCcEEEECCCCcCccCCCCC----CCccEEECcCC-cCceECHHHcCCCCCCCEEECCCC-ccCCcChhhcc-----Ccc
Confidence            34677777777788887553    68999999996 566554 3 899999999999996 57777755443     599


Q ss_pred             CCceeeccCCCccccccccccCCccccCCCccceeeeccCCCccccCCCCcchHHHHHHhcccccccCCCCccccEEEec
Q 048322          253 SLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSYPRLCRLEVD  332 (498)
Q Consensus       253 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~L~l~  332 (498)
                      +|++|+++++ .++.+.++....     +++|++|++++| .+. .+|..                .+..+++|++|+++
T Consensus       124 ~L~~L~L~~n-~l~~~~~~~~~~-----l~~L~~L~L~~N-~l~-~~~~~----------------~~~~l~~L~~L~l~  179 (452)
T 3zyi_A          124 SLNTLELFDN-WLTVIPSGAFEY-----LSKLRELWLRNN-PIE-SIPSY----------------AFNRVPSLMRLDLG  179 (452)
T ss_dssp             TCCEEECCSS-CCSBCCTTTSSS-----CTTCCEEECCSC-CCC-EECTT----------------TTTTCTTCCEEECC
T ss_pred             cCCEEECCCC-cCCccChhhhcc-----cCCCCEEECCCC-Ccc-eeCHh----------------HHhcCCcccEEeCC
Confidence            9999999987 456555433333     899999999998 454 44431                46678999999999


Q ss_pred             CCCcce-ec--CCCCCCCccEEEEeccEeeeecCCCCccCCCCCCcCC--CCCCCCCeEEecCC--------CCCCCCCc
Q 048322          333 ECKELV-CR--TPIDSKLIKFMTISNSSLDMIGCKGMLYDSQAGSSLP--KPMTTTNVLEFGKL--------LEPGFQIL  399 (498)
Q Consensus       333 ~~~~~~-~~--~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~l~~lp--~~l~~L~~L~i~~~--------~~~~lp~L  399 (498)
                      +|..+. ++  ....+++|+.|++++|.+               ..+|  ..+++|+.|++++|        .+..+++|
T Consensus       180 ~~~~l~~i~~~~~~~l~~L~~L~L~~n~l---------------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  244 (452)
T 3zyi_A          180 ELKKLEYISEGAFEGLFNLKYLNLGMCNI---------------KDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSL  244 (452)
T ss_dssp             CCTTCCEECTTTTTTCTTCCEEECTTSCC---------------SSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTC
T ss_pred             CCCCccccChhhccCCCCCCEEECCCCcc---------------cccccccccccccEEECcCCcCcccCcccccCccCC
Confidence            976655 22  234589999999998733               3333  24489999999999        35678889


Q ss_pred             cEEEEcCCCCCCCccccCCCCccCCCCCCcCeEeeecCCCCCcCCCCC--ccccccceeeccCc
Q 048322          400 ETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPNLTLFPEVG--LPSSLLDLYVNNCP  461 (498)
Q Consensus       400 ~~L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~~l~~lp~~~--~~~sL~~L~i~~c~  461 (498)
                      +.|+++++. ++.+     .+..+..+++|++|++++| .++.+|...  ..++|+.|+++++|
T Consensus       245 ~~L~L~~n~-l~~~-----~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np  301 (452)
T 3zyi_A          245 KKLWVMNSQ-VSLI-----ERNAFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHNP  301 (452)
T ss_dssp             CEEECTTSC-CCEE-----CTTTTTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred             CEEEeCCCc-CceE-----CHHHhcCCCCCCEEECCCC-cCCccChHHhccccCCCEEEccCCC
Confidence            999999854 4332     1667889999999999996 788888653  35889999998765

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.67  E-value=4.7e-16  Score=160.83  Aligned_cols=107  Identities=12%  Similarity=0.123  Sum_probs=72.0

Q ss_pred             HHhhcccCCcccEEEEecCCCCCCcChhhHHHhhhcCCCCCCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCC
Q 048322          134 EAALCEKLNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCV  213 (498)
Q Consensus       134 ~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~  213 (498)
                      ...+.++++|++|+|+.+.-.         ...++.+..+++|++|+++++....+|..    .+++|++|++++|....
T Consensus        38 ~~~~~~l~~L~~L~Ls~n~l~---------~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~----~l~~L~~L~L~~N~l~~  104 (520)
T 2z7x_B           38 TSDILSLSKLRILIISHNRIQ---------YLDISVFKFNQELEYLDLSHNKLVKISCH----PTVNLKHLDLSFNAFDA  104 (520)
T ss_dssp             HHHHTTCTTCCEEECCSSCCC---------EEEGGGGTTCTTCCEEECCSSCCCEEECC----CCCCCSEEECCSSCCSS
T ss_pred             hhhccccccccEEecCCCccC---------CcChHHhhcccCCCEEecCCCceeecCcc----ccCCccEEeccCCcccc
Confidence            345677888888888777520         01134456668888888888887777765    37888888888864333


Q ss_pred             -CCCC-CCCccccceeeccccccceecCccccCCCCCCCCCCC--ceeeccCC
Q 048322          214 -SLPS-LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSL--KILRFENL  262 (498)
Q Consensus       214 -~lp~-i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L--~~L~l~~~  262 (498)
                       .+|. ++.+++|++|+++++. +...  .+      ..+++|  +.|++.++
T Consensus       105 ~~~p~~~~~l~~L~~L~L~~n~-l~~~--~~------~~l~~L~L~~L~l~~n  148 (520)
T 2z7x_B          105 LPICKEFGNMSQLKFLGLSTTH-LEKS--SV------LPIAHLNISKVLLVLG  148 (520)
T ss_dssp             CCCCGGGGGCTTCCEEEEEESS-CCGG--GG------GGGTTSCEEEEEEEEC
T ss_pred             ccchhhhccCCcceEEEecCcc-cchh--hc------cccccceeeEEEeecc
Confidence             3554 8888888888888753 3321  11      236666  88888765

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.66  E-value=1.8e-15  Score=146.93  Aligned_cols=228  Identities=15%  Similarity=0.200  Sum_probs=170.6

Q ss_pred             CCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCC--CCCccccceeeccccccceecCccccCCCCCCCC
Q 048322          174 KCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPS--LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPF  251 (498)
Q Consensus       174 ~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~--i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~  251 (498)
                      .+++++++++++...+|..+.    ++|++|++++| .++.+|+  ++.+++|++|+++++ .+..++...++     .+
T Consensus        31 c~l~~l~~~~~~l~~lp~~~~----~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~-----~l   99 (330)
T 1xku_A           31 CHLRVVQCSDLGLEKVPKDLP----PDTALLDLQNN-KITEIKDGDFKNLKNLHTLILINN-KISKISPGAFA-----PL   99 (330)
T ss_dssp             EETTEEECTTSCCCSCCCSCC----TTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSS-CCCCBCTTTTT-----TC
T ss_pred             CCCeEEEecCCCccccCccCC----CCCeEEECCCC-cCCEeChhhhccCCCCCEEECCCC-cCCeeCHHHhc-----CC
Confidence            478999999988888887653    68999999996 5666664  899999999999986 46666443332     58


Q ss_pred             CCCceeeccCCCccccccccccCCccccCCCccceeeeccCCCccccCCCCcchHHHHHHhcccccccCCCCccccEEEe
Q 048322          252 PSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSYPRLCRLEV  331 (498)
Q Consensus       252 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~L~l  331 (498)
                      ++|++|+++++ .++.+....        +++|++|++++| .+. .++.                ..+..+++|+.|++
T Consensus       100 ~~L~~L~Ls~n-~l~~l~~~~--------~~~L~~L~l~~n-~l~-~~~~----------------~~~~~l~~L~~L~l  152 (330)
T 1xku_A          100 VKLERLYLSKN-QLKELPEKM--------PKTLQELRVHEN-EIT-KVRK----------------SVFNGLNQMIVVEL  152 (330)
T ss_dssp             TTCCEEECCSS-CCSBCCSSC--------CTTCCEEECCSS-CCC-BBCH----------------HHHTTCTTCCEEEC
T ss_pred             CCCCEEECCCC-cCCccChhh--------cccccEEECCCC-ccc-ccCH----------------hHhcCCccccEEEC
Confidence            99999999876 344443221        579999999988 443 3331                13456889999999


Q ss_pred             cCCCcce----ecCCCCCCCccEEEEeccEeeeecCCCCccCCCCCCcCCCCC-CCCCeEEecCC--------CCCCCCC
Q 048322          332 DECKELV----CRTPIDSKLIKFMTISNSSLDMIGCKGMLYDSQAGSSLPKPM-TTTNVLEFGKL--------LEPGFQI  398 (498)
Q Consensus       332 ~~~~~~~----~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~l~~lp~~l-~~L~~L~i~~~--------~~~~lp~  398 (498)
                      ++|....    ......+++|+.|++++|               .+..+|..+ ++|+.|++++|        .+..+++
T Consensus       153 ~~n~l~~~~~~~~~~~~l~~L~~L~l~~n---------------~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~  217 (330)
T 1xku_A          153 GTNPLKSSGIENGAFQGMKKLSYIRIADT---------------NITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNN  217 (330)
T ss_dssp             CSSCCCGGGBCTTGGGGCTTCCEEECCSS---------------CCCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTT
T ss_pred             CCCcCCccCcChhhccCCCCcCEEECCCC---------------ccccCCccccccCCEEECCCCcCCccCHHHhcCCCC
Confidence            9987643    122344899999999886               444555544 78999999998        3457788


Q ss_pred             ccEEEEcCCCCCCCccccCCCCccCCCCCCcCeEeeecCCCCCcCCCC-CccccccceeeccCc
Q 048322          399 LETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPNLTLFPEV-GLPSSLLDLYVNNCP  461 (498)
Q Consensus       399 L~~L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~~l~~lp~~-~~~~sL~~L~i~~c~  461 (498)
                      |+.|+++++. ++.+     .+..+..+++|++|++++| .+..+|.. ...++|++|++++|+
T Consensus       218 L~~L~Ls~n~-l~~~-----~~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N~  274 (330)
T 1xku_A          218 LAKLGLSFNS-ISAV-----DNGSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNNN  274 (330)
T ss_dssp             CCEEECCSSC-CCEE-----CTTTGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSSC
T ss_pred             CCEEECCCCc-Ccee-----ChhhccCCCCCCEEECCCC-cCccCChhhccCCCcCEEECCCCc
Confidence            9999999864 4332     1456788999999999997 77888875 445899999999885

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.66  E-value=1.8e-15  Score=158.14  Aligned_cols=231  Identities=19%  Similarity=0.135  Sum_probs=178.1

Q ss_pred             CCcccEEEEecCCCCCCcChhhHHHhhhcCCCCCCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCCCCC
Q 048322          141 LNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPSLGL  220 (498)
Q Consensus       141 ~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~i~~  220 (498)
                      ++|+.|+++.+.- ..         +..   .+++|++|++++|....+|.     .+++|++|++++| .+..+|.  .
T Consensus        61 ~~L~~L~L~~N~l-~~---------lp~---~l~~L~~L~Ls~N~l~~lp~-----~l~~L~~L~Ls~N-~l~~l~~--~  119 (622)
T 3g06_A           61 AHITTLVIPDNNL-TS---------LPA---LPPELRTLEVSGNQLTSLPV-----LPPGLLELSIFSN-PLTHLPA--L  119 (622)
T ss_dssp             TTCSEEEECSCCC-SC---------CCC---CCTTCCEEEECSCCCSCCCC-----CCTTCCEEEECSC-CCCCCCC--C
T ss_pred             CCCcEEEecCCCC-CC---------CCC---cCCCCCEEEcCCCcCCcCCC-----CCCCCCEEECcCC-cCCCCCC--C
Confidence            6899999987752 11         111   35899999999999888887     3789999999986 6777887  6


Q ss_pred             ccccceeeccccccceecCccccCCCCCCCCCCCceeeccCCCccccccccccCCccccCCCccceeeeccCCCccccCC
Q 048322          221 LSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLP  300 (498)
Q Consensus       221 l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp  300 (498)
                      +++|+.|+++++ .++.+|.         .+++|++|+++++ .++.+..    .     +++|+.|++++| .++ .+|
T Consensus       120 l~~L~~L~L~~N-~l~~lp~---------~l~~L~~L~Ls~N-~l~~l~~----~-----~~~L~~L~L~~N-~l~-~l~  177 (622)
T 3g06_A          120 PSGLCKLWIFGN-QLTSLPV---------LPPGLQELSVSDN-QLASLPA----L-----PSELCKLWAYNN-QLT-SLP  177 (622)
T ss_dssp             CTTCCEEECCSS-CCSCCCC---------CCTTCCEEECCSS-CCSCCCC----C-----CTTCCEEECCSS-CCS-CCC
T ss_pred             CCCcCEEECCCC-CCCcCCC---------CCCCCCEEECcCC-cCCCcCC----c-----cCCCCEEECCCC-CCC-CCc
Confidence            789999999985 5777764         2689999999887 4444321    1     678999999987 565 688


Q ss_pred             CCcchHHHH-HHhcccccccCCC-CccccEEEecCCCcceecCCCCCCCccEEEEeccEeeeecCCCCccCCCCCCcCCC
Q 048322          301 ELLPSLEIL-VSKCEKLVVSLSS-YPRLCRLEVDECKELVCRTPIDSKLIKFMTISNSSLDMIGCKGMLYDSQAGSSLPK  378 (498)
Q Consensus       301 ~~l~~L~~L-i~~~~~l~~~~~~-l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~l~~lp~  378 (498)
                      ..+++|+.| +.++. +. .+|. +++|+.|++++|....++..  +++|+.|++++|               .++.+|.
T Consensus       178 ~~~~~L~~L~Ls~N~-l~-~l~~~~~~L~~L~L~~N~l~~l~~~--~~~L~~L~Ls~N---------------~L~~lp~  238 (622)
T 3g06_A          178 MLPSGLQELSVSDNQ-LA-SLPTLPSELYKLWAYNNRLTSLPAL--PSGLKELIVSGN---------------RLTSLPV  238 (622)
T ss_dssp             CCCTTCCEEECCSSC-CS-CCCCCCTTCCEEECCSSCCSSCCCC--CTTCCEEECCSS---------------CCSCCCC
T ss_pred             ccCCCCcEEECCCCC-CC-CCCCccchhhEEECcCCcccccCCC--CCCCCEEEccCC---------------ccCcCCC
Confidence            777888888 77654 33 3444 78999999999987766543  589999999886               5666777


Q ss_pred             CCCCCCeEEecCCCCC----CCCCccEEEEcCCCCCCCccccCCCCccCCCCCCcCeEeeecCCCC
Q 048322          379 PMTTTNVLEFGKLLEP----GFQILETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPNL  440 (498)
Q Consensus       379 ~l~~L~~L~i~~~~~~----~lp~L~~L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~~l  440 (498)
                      .+++|+.|++++|.+.    .+++|+.|++++| .++.      +|..+..+++|+.|++++|+.-
T Consensus       239 ~l~~L~~L~Ls~N~L~~lp~~~~~L~~L~Ls~N-~L~~------lp~~l~~l~~L~~L~L~~N~l~  297 (622)
T 3g06_A          239 LPSELKELMVSGNRLTSLPMLPSGLLSLSVYRN-QLTR------LPESLIHLSSETTVNLEGNPLS  297 (622)
T ss_dssp             CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSS-CCCS------CCGGGGGSCTTCEEECCSCCCC
T ss_pred             CCCcCcEEECCCCCCCcCCcccccCcEEeCCCC-CCCc------CCHHHhhccccCEEEecCCCCC
Confidence            7799999999999333    4456999999986 4544      3888999999999999997643

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.66  E-value=2.2e-15  Score=152.39  Aligned_cols=216  Identities=15%  Similarity=0.132  Sum_probs=94.7

Q ss_pred             CCCceEEEeecCCCCCC-ccccCCCCCCccEEeEeCCCCCCCCCC--CCCccccceeeccccccceecCccccCCCCCCC
Q 048322          174 KCIKKVAIRNYGGARFP-LWIGDPLFSKIEFLELENCNNCVSLPS--LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMP  250 (498)
Q Consensus       174 ~~L~~L~l~~~~~~~~p-~~~~~~~l~~L~~L~l~~c~~~~~lp~--i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~  250 (498)
                      +++++|+++++....++ ..+.  .+++|++|+|++| .+..+++  +..+++|++|+++++ .++.++...+.     .
T Consensus        64 ~~l~~L~L~~n~i~~~~~~~~~--~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~-----~  134 (440)
T 3zyj_A           64 TNTRLLNLHENQIQIIKVNSFK--HLRHLEILQLSRN-HIRTIEIGAFNGLANLNTLELFDN-RLTTIPNGAFV-----Y  134 (440)
T ss_dssp             TTCSEEECCSCCCCEECTTTTS--SCSSCCEEECCSS-CCCEECGGGGTTCSSCCEEECCSS-CCSSCCTTTSC-----S
T ss_pred             CCCcEEEccCCcCCeeCHHHhh--CCCCCCEEECCCC-cCCccChhhccCCccCCEEECCCC-cCCeeCHhHhh-----c
Confidence            34455555544443332 2222  3445555555543 2333332  444555555555443 34444433222     2


Q ss_pred             CCCCceeeccCCCccccccccccCCccccCCCccceeeeccCCCccccCCCCcchHHHHHHhcccccccCCCCccccEEE
Q 048322          251 FPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSYPRLCRLE  330 (498)
Q Consensus       251 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~L~  330 (498)
                      +++|++|+++++ .++.+.+....     .+++|++|++++|..+. .++..                .+..+++|++|+
T Consensus       135 l~~L~~L~L~~N-~i~~~~~~~~~-----~l~~L~~L~l~~~~~l~-~i~~~----------------~~~~l~~L~~L~  191 (440)
T 3zyj_A          135 LSKLKELWLRNN-PIESIPSYAFN-----RIPSLRRLDLGELKRLS-YISEG----------------AFEGLSNLRYLN  191 (440)
T ss_dssp             CSSCCEEECCSC-CCCEECTTTTT-----TCTTCCEEECCCCTTCC-EECTT----------------TTTTCSSCCEEE
T ss_pred             cccCceeeCCCC-cccccCHHHhh-----hCcccCEeCCCCCCCcc-eeCcc----------------hhhcccccCeec
Confidence            445555555443 22222211111     14555555555443332 22220                233345555555


Q ss_pred             ecCCCcceecCCCCCCCccEEEEeccEeeeecCCCCccCCCCCCcCCCCCCCCCeEEecCC--------CCCCCCCccEE
Q 048322          331 VDECKELVCRTPIDSKLIKFMTISNSSLDMIGCKGMLYDSQAGSSLPKPMTTTNVLEFGKL--------LEPGFQILETL  402 (498)
Q Consensus       331 l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~l~~lp~~l~~L~~L~i~~~--------~~~~lp~L~~L  402 (498)
                      +++|....++....+++|+.|++++|.+......       .   + ..+++|+.|++++|        .+..+++|+.|
T Consensus       192 L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-------~---~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  260 (440)
T 3zyj_A          192 LAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPG-------S---F-QGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEI  260 (440)
T ss_dssp             CTTSCCSSCCCCTTCSSCCEEECTTSCCCEECTT-------T---T-TTCTTCCEEECTTCCCCEECTTSSTTCTTCCEE
T ss_pred             CCCCcCccccccCCCcccCEEECCCCccCccChh-------h---h-ccCccCCEEECCCCceeEEChhhhcCCCCCCEE
Confidence            5555444444444455555555555422211000       0   0 12245555555555        23445666666


Q ss_pred             EEcCCCCCCCccccCCCCccCCCCCCcCeEeeecCC
Q 048322          403 VIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCP  438 (498)
Q Consensus       403 ~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~  438 (498)
                      +++++ .++.+.     +..+..+++|+.|++++++
T Consensus       261 ~L~~N-~l~~~~-----~~~~~~l~~L~~L~L~~Np  290 (440)
T 3zyj_A          261 NLAHN-NLTLLP-----HDLFTPLHHLERIHLHHNP  290 (440)
T ss_dssp             ECTTS-CCCCCC-----TTTTSSCTTCCEEECCSSC
T ss_pred             ECCCC-CCCccC-----hhHhccccCCCEEEcCCCC
Confidence            66663 343321     3345566677777766543

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.66  E-value=1.9e-15  Score=165.16  Aligned_cols=146  Identities=10%  Similarity=0.007  Sum_probs=98.5

Q ss_pred             cCCcccEEEEecCCCCCCcChhhHHHhhhcCCCCCCCceEEEeecC-CCCC-CccccCCCCCCccEEeEeCCCCCCCCCC
Q 048322          140 KLNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYG-GARF-PLWIGDPLFSKIEFLELENCNNCVSLPS  217 (498)
Q Consensus       140 ~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~-~~~~-p~~~~~~~l~~L~~L~l~~c~~~~~lp~  217 (498)
                      ..+++.|+|+.+.-.         ......+..+++|++|+++++. ...+ |..+.  .+++|++|+|++|......|.
T Consensus        23 p~~l~~LdLs~N~i~---------~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~--~L~~L~~L~Ls~N~l~~~~p~   91 (844)
T 3j0a_A           23 LNTTERLLLSFNYIR---------TVTASSFPFLEQLQLLELGSQYTPLTIDKEAFR--NLPNLRILDLGSSKIYFLHPD   91 (844)
T ss_dssp             CTTCCEEEEESCCCC---------EECSSSCSSCCSCSEEEECTTCCCCEECTTTTS--SCTTCCEEECTTCCCCEECTT
T ss_pred             CCCcCEEECCCCcCC---------ccChhHCcccccCeEEeCCCCCCccccCHHHhc--CCCCCCEEECCCCcCcccCHh
Confidence            368999999987520         1123456778999999999984 3344 55666  689999999999754444465


Q ss_pred             -CCCccccceeeccccccceecCccccCCCCCCCCCCCceeeccCCCccccccccccCCccccCCCccceeeeccCCCcc
Q 048322          218 -LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLS  296 (498)
Q Consensus       218 -i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~  296 (498)
                       ++.+++|++|++++|.-...++..    ..+..+++|++|+++++ .+....+.    ..+..+++|++|++++| .+.
T Consensus        92 ~~~~l~~L~~L~Ls~n~l~~~~~~~----~~~~~L~~L~~L~Ls~N-~l~~~~~~----~~~~~L~~L~~L~Ls~N-~i~  161 (844)
T 3j0a_A           92 AFQGLFHLFELRLYFCGLSDAVLKD----GYFRNLKALTRLDLSKN-QIRSLYLH----PSFGKLNSLKSIDFSSN-QIF  161 (844)
T ss_dssp             SSCSCSSCCCEECTTCCCSSCCSTT----CCCSSCSSCCEEEEESC-CCCCCCCC----GGGGTCSSCCEEEEESS-CCC
T ss_pred             HccCCcccCEeeCcCCCCCcccccC----ccccccCCCCEEECCCC-cccccccc----hhHhhCCCCCEEECCCC-cCC
Confidence             999999999999997433333332    11235999999999987 33333211    11233899999999987 444


Q ss_pred             ccCCCCcchH
Q 048322          297 GKLPELLPSL  306 (498)
Q Consensus       297 ~~lp~~l~~L  306 (498)
                      +..|..+..+
T Consensus       162 ~~~~~~l~~l  171 (844)
T 3j0a_A          162 LVCEHELEPL  171 (844)
T ss_dssp             CCCSGGGHHH
T ss_pred             eeCHHHcccc
Confidence            3555555444

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.66  E-value=6.1e-15  Score=149.05  Aligned_cols=230  Identities=18%  Similarity=0.235  Sum_probs=173.3

Q ss_pred             CCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCC--CCCccccceeeccccccceecCccccCCCCCCCCC
Q 048322          175 CIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPS--LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFP  252 (498)
Q Consensus       175 ~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~--i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~  252 (498)
                      ..+.++..+.+...+|..+.    ++++.|+|++| .+..+++  ++.+++|++|+++++ .+..++...+.     .++
T Consensus        44 ~~~~v~c~~~~l~~iP~~~~----~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~-----~l~  112 (440)
T 3zyj_A           44 QFSKVICVRKNLREVPDGIS----TNTRLLNLHEN-QIQIIKVNSFKHLRHLEILQLSRN-HIRTIEIGAFN-----GLA  112 (440)
T ss_dssp             TSCEEECCSCCCSSCCSCCC----TTCSEEECCSC-CCCEECTTTTSSCSSCCEEECCSS-CCCEECGGGGT-----TCS
T ss_pred             CCCEEEeCCCCcCcCCCCCC----CCCcEEEccCC-cCCeeCHHHhhCCCCCCEEECCCC-cCCccChhhcc-----CCc
Confidence            35677778878888888654    68999999996 5666653  899999999999996 57777765444     589


Q ss_pred             CCceeeccCCCccccccccccCCccccCCCccceeeeccCCCccccCCCCcchHHHHHHhcccccccCCCCccccEEEec
Q 048322          253 SLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSYPRLCRLEVD  332 (498)
Q Consensus       253 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~L~l~  332 (498)
                      +|++|+++++ .++.+.++....     +++|++|+++++ .+. .+|..                .+..+++|++|+++
T Consensus       113 ~L~~L~L~~n-~l~~~~~~~~~~-----l~~L~~L~L~~N-~i~-~~~~~----------------~~~~l~~L~~L~l~  168 (440)
T 3zyj_A          113 NLNTLELFDN-RLTTIPNGAFVY-----LSKLKELWLRNN-PIE-SIPSY----------------AFNRIPSLRRLDLG  168 (440)
T ss_dssp             SCCEEECCSS-CCSSCCTTTSCS-----CSSCCEEECCSC-CCC-EECTT----------------TTTTCTTCCEEECC
T ss_pred             cCCEEECCCC-cCCeeCHhHhhc-----cccCceeeCCCC-ccc-ccCHH----------------HhhhCcccCEeCCC
Confidence            9999999987 566555333333     899999999988 454 44431                45668999999999


Q ss_pred             CCCcce-ec--CCCCCCCccEEEEeccEeeeecCCCCccCCCCCCcCC--CCCCCCCeEEecCC--------CCCCCCCc
Q 048322          333 ECKELV-CR--TPIDSKLIKFMTISNSSLDMIGCKGMLYDSQAGSSLP--KPMTTTNVLEFGKL--------LEPGFQIL  399 (498)
Q Consensus       333 ~~~~~~-~~--~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~l~~lp--~~l~~L~~L~i~~~--------~~~~lp~L  399 (498)
                      +|..+. ++  ....+++|+.|++++|.               +..+|  ..+++|+.|++++|        .+..+++|
T Consensus       169 ~~~~l~~i~~~~~~~l~~L~~L~L~~n~---------------l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  233 (440)
T 3zyj_A          169 ELKRLSYISEGAFEGLSNLRYLNLAMCN---------------LREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHL  233 (440)
T ss_dssp             CCTTCCEECTTTTTTCSSCCEEECTTSC---------------CSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred             CCCCcceeCcchhhcccccCeecCCCCc---------------CccccccCCCcccCEEECCCCccCccChhhhccCccC
Confidence            976555 22  23458999999999873               33343  24488999999999        45677889


Q ss_pred             cEEEEcCCCCCCCccccCCCCccCCCCCCcCeEeeecCCCCCcCCCCC--ccccccceeeccCc
Q 048322          400 ETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPNLTLFPEVG--LPSSLLDLYVNNCP  461 (498)
Q Consensus       400 ~~L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~~l~~lp~~~--~~~sL~~L~i~~c~  461 (498)
                      +.|+++++. ++.+     .+..+..+++|++|++++| .++.+|...  ..++|+.|+++++|
T Consensus       234 ~~L~L~~n~-l~~~-----~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np  290 (440)
T 3zyj_A          234 QKLWMIQSQ-IQVI-----ERNAFDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHHNP  290 (440)
T ss_dssp             CEEECTTCC-CCEE-----CTTSSTTCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred             CEEECCCCc-eeEE-----ChhhhcCCCCCCEEECCCC-CCCccChhHhccccCCCEEEcCCCC
Confidence            999999854 4432     1667889999999999995 788888653  34899999998765

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.66  E-value=2.5e-16  Score=154.48  Aligned_cols=41  Identities=17%  Similarity=0.277  Sum_probs=22.4

Q ss_pred             CccCCCCCCcCeEeeecCCCCCcCCCC--CccccccceeeccCc
Q 048322          420 SMGFQRLTSLQSLKIWNCPNLTLFPEV--GLPSSLLDLYVNNCP  461 (498)
Q Consensus       420 ~~~l~~l~~L~~L~l~~c~~l~~lp~~--~~~~sL~~L~i~~c~  461 (498)
                      |.++..+++|++|++++| .++.+|..  +..++|++|++++++
T Consensus       270 ~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~  312 (353)
T 2z80_A          270 MKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNP  312 (353)
T ss_dssp             HHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             HHHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCC
Confidence            444555666666666654 45555543  223566666665543

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.66  E-value=1.4e-15  Score=162.62  Aligned_cols=75  Identities=17%  Similarity=0.175  Sum_probs=53.7

Q ss_pred             CCCCCCeEEecCC--------CCCCCCCccEEEEcCCCCCCCccccCCCCc-cCCCCCCcCeEeeecCCCCCcCCCCC--
Q 048322          379 PMTTTNVLEFGKL--------LEPGFQILETLVIGNSEQLKPWRQGRGLSM-GFQRLTSLQSLKIWNCPNLTLFPEVG--  447 (498)
Q Consensus       379 ~l~~L~~L~i~~~--------~~~~lp~L~~L~l~~c~~L~~l~~l~~l~~-~l~~l~~L~~L~l~~c~~l~~lp~~~--  447 (498)
                      .+++|+.|++++|        .+.++++|+.|++++ +.++.+      |. .+..+++|++|++++| .++.++...  
T Consensus       534 ~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~-N~l~~l------~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~  605 (680)
T 1ziw_A          534 GLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGL-NNLNTL------PASVFNNQVSLKSLNLQKN-LITSVEKKVFG  605 (680)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCC------CTTTTTTCTTCCEEECTTS-CCCBCCHHHHH
T ss_pred             CCCCCCEEECCCCCCCCCCHHHcccccCcceeECCC-CCCCcC------CHhHhCCCCCCCEEECCCC-cCCccChhHhc
Confidence            4478888888887        245667788888876 445443      44 4578889999999885 777776542  


Q ss_pred             -ccccccceeeccCc
Q 048322          448 -LPSSLLDLYVNNCP  461 (498)
Q Consensus       448 -~~~sL~~L~i~~c~  461 (498)
                       ..++|+.|+++++|
T Consensus       606 ~~~~~L~~l~l~~N~  620 (680)
T 1ziw_A          606 PAFRNLTELDMRFNP  620 (680)
T ss_dssp             HHHTTCSEEECTTCC
T ss_pred             ccccccCEEEccCCC
Confidence             34788899988766

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.65  E-value=1.8e-15  Score=161.68  Aligned_cols=303  Identities=14%  Similarity=0.105  Sum_probs=161.7

Q ss_pred             HhhcccCCcccEEEEecCCCCCCcChhhHHHhhhcCCCCCCCceEEEeecCCCCCCcc-ccCCCCCCccEEeEeCCCCCC
Q 048322          135 AALCEKLNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPLW-IGDPLFSKIEFLELENCNNCV  213 (498)
Q Consensus       135 ~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~-~~~~~l~~L~~L~l~~c~~~~  213 (498)
                      ..+.++++|++|+|+++.-...         ....+..+++|++|+++++....+|.. +.  .+++|++|++++| .+.
T Consensus        43 ~~~~~l~~L~~L~Ls~n~l~~~---------~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~--~l~~L~~L~L~~n-~l~  110 (680)
T 1ziw_A           43 ANFTRYSQLTSLDVGFNTISKL---------EPELCQKLPMLKVLNLQHNELSQLSDKTFA--FCTNLTELHLMSN-SIQ  110 (680)
T ss_dssp             GGGGGGTTCSEEECCSSCCCCC---------CTTHHHHCTTCCEEECCSSCCCCCCTTTTT--TCTTCSEEECCSS-CCC
T ss_pred             HHHhCCCcCcEEECCCCccCcc---------CHHHHhcccCcCEEECCCCccCccChhhhc--cCCCCCEEECCCC-ccC
Confidence            4567788899998887642110         012223357888888888888777763 55  5788888888886 456


Q ss_pred             CCCC--CCCccccceeeccccccceecCccccCCCCCCCCCCCceeeccCCCccccccccccCCccccCCCccceeeecc
Q 048322          214 SLPS--LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVK  291 (498)
Q Consensus       214 ~lp~--i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~  291 (498)
                      .+|+  ++.+++|++|+++++. +..++...+     ..+++|++|+++++ .++...+...+   ...+++|++|++++
T Consensus       111 ~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~-----~~l~~L~~L~L~~n-~l~~~~~~~~~---~~~~~~L~~L~L~~  180 (680)
T 1ziw_A          111 KIKNNPFVKQKNLITLDLSHNG-LSSTKLGTQ-----VQLENLQELLLSNN-KIQALKSEELD---IFANSSLKKLELSS  180 (680)
T ss_dssp             CCCSCTTTTCTTCCEEECCSSC-CSCCCCCSS-----SCCTTCCEEECCSS-CCCCBCHHHHG---GGTTCEESEEECTT
T ss_pred             ccChhHccccCCCCEEECCCCc-ccccCchhh-----cccccCCEEEccCC-cccccCHHHhh---ccccccccEEECCC
Confidence            6663  8888888888888864 444433322     24778888888765 33333211100   01146677777776


Q ss_pred             CCCccccCCCCcch---H---------------------------HHH-HHhcccccc----cCCCC--ccccEEEecCC
Q 048322          292 CPKLSGKLPELLPS---L---------------------------EIL-VSKCEKLVV----SLSSY--PRLCRLEVDEC  334 (498)
Q Consensus       292 c~~l~~~lp~~l~~---L---------------------------~~L-i~~~~~l~~----~~~~l--~~L~~L~l~~~  334 (498)
                      | .+++..|..+..   |                           +.| +.++. +..    .+..+  ++|++|++++|
T Consensus       181 n-~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~-l~~~~~~~~~~l~~~~L~~L~Ls~n  258 (680)
T 1ziw_A          181 N-QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQ-LSTTSNTTFLGLKWTNLTMLDLSYN  258 (680)
T ss_dssp             C-CCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSC-CCEECTTTTGGGGGSCCCEEECTTS
T ss_pred             C-cccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCc-ccccChhHhhccCcCCCCEEECCCC
Confidence            6 333233332211   1                           111 11111 111    11112  23677777666


Q ss_pred             Ccceec--CCCCCCCccEEEEeccEeeee------cCCCCc----cCC-----CCCCcCC-------CCCCCCCeEEecC
Q 048322          335 KELVCR--TPIDSKLIKFMTISNSSLDMI------GCKGML----YDS-----QAGSSLP-------KPMTTTNVLEFGK  390 (498)
Q Consensus       335 ~~~~~~--~~~~~~~L~~L~l~~~~l~~~------~~~~l~----~~~-----~~l~~lp-------~~l~~L~~L~i~~  390 (498)
                      .....+  ....+++|++|++++|.+...      .++.+.    ..+     -.+..+|       ..+++|+.|++++
T Consensus       259 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~  338 (680)
T 1ziw_A          259 NLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMED  338 (680)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCS
T ss_pred             CcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCC
Confidence            554432  233466677777766643321      122111    000     0000122       2336777777777


Q ss_pred             C--------CCCCCCCccEEEEcCCC-----------------CCCCc----cccCC-CCccCCCCCCcCeEeeecCCCC
Q 048322          391 L--------LEPGFQILETLVIGNSE-----------------QLKPW----RQGRG-LSMGFQRLTSLQSLKIWNCPNL  440 (498)
Q Consensus       391 ~--------~~~~lp~L~~L~l~~c~-----------------~L~~l----~~l~~-l~~~l~~l~~L~~L~l~~c~~l  440 (498)
                      |        .+..+++|++|++++|.                 .++.+    ..+.. .|..+..+++|++|++++|...
T Consensus       339 n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  418 (680)
T 1ziw_A          339 NDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIG  418 (680)
T ss_dssp             CCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCE
T ss_pred             CccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCc
Confidence            6        23455667777776642                 11100    00111 1556777888888888876543


Q ss_pred             CcCCCC--CccccccceeeccCc
Q 048322          441 TLFPEV--GLPSSLLDLYVNNCP  461 (498)
Q Consensus       441 ~~lp~~--~~~~sL~~L~i~~c~  461 (498)
                      ..+|..  .-.++|++|++++|.
T Consensus       419 ~~~~~~~~~~l~~L~~L~Ls~n~  441 (680)
T 1ziw_A          419 QELTGQEWRGLENIFEIYLSYNK  441 (680)
T ss_dssp             EECCSGGGTTCTTCCEEECCSCS
T ss_pred             cccCcccccCcccccEEecCCCC
Confidence            445532  234677777777664

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.65  E-value=8.9e-17  Score=154.88  Aligned_cols=244  Identities=15%  Similarity=0.141  Sum_probs=167.2

Q ss_pred             CCcccEEEEecCCCCCCcChhhHHHhhhcCCCCCCCceEEEee-cCC-CCCCccccCCCCCCccEEeEeCCCCCCCCCC-
Q 048322          141 LNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRN-YGG-ARFPLWIGDPLFSKIEFLELENCNNCVSLPS-  217 (498)
Q Consensus       141 ~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~-~~~-~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~-  217 (498)
                      .+++.|+|+.+.-..       ...++..+..+++|++|++++ +.. ..+|..+.  .+++|++|++++|.....+|. 
T Consensus        50 ~~l~~L~L~~~~l~~-------~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~--~l~~L~~L~Ls~n~l~~~~p~~  120 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPK-------PYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIA--KLTQLHYLYITHTNVSGAIPDF  120 (313)
T ss_dssp             CCEEEEEEECCCCSS-------CEECCGGGGGCTTCSEEEEEEETTEESCCCGGGG--GCTTCSEEEEEEECCEEECCGG
T ss_pred             ceEEEEECCCCCccC-------CcccChhHhCCCCCCeeeCCCCCcccccCChhHh--cCCCCCEEECcCCeeCCcCCHH
Confidence            578899998775210       002345566779999999995 553 36788887  699999999999755557776 


Q ss_pred             CCCccccceeeccccccce-ecCccccCCCCCCCCCCCceeeccCCCccccccccccCCccccCCC-ccceeeeccCCCc
Q 048322          218 LGLLSSLKHLAVKGLKKLK-SIESEVYGEGFSMPFPSLKILRFENLPEWWHWDTDIKGNVHVDIFP-RLQELSVVKCPKL  295 (498)
Q Consensus       218 i~~l~~L~~L~l~~~~~l~-~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~-~L~~L~l~~c~~l  295 (498)
                      ++.+++|++|+++++. +. .+|..+.      .+++|++|+++++ .+.+..+...+     .++ +|++|++++| .+
T Consensus       121 ~~~l~~L~~L~Ls~N~-l~~~~p~~~~------~l~~L~~L~L~~N-~l~~~~p~~l~-----~l~~~L~~L~L~~N-~l  186 (313)
T 1ogq_A          121 LSQIKTLVTLDFSYNA-LSGTLPPSIS------SLPNLVGITFDGN-RISGAIPDSYG-----SFSKLFTSMTISRN-RL  186 (313)
T ss_dssp             GGGCTTCCEEECCSSE-EESCCCGGGG------GCTTCCEEECCSS-CCEEECCGGGG-----CCCTTCCEEECCSS-EE
T ss_pred             HhCCCCCCEEeCCCCc-cCCcCChHHh------cCCCCCeEECcCC-cccCcCCHHHh-----hhhhcCcEEECcCC-ee
Confidence            8999999999999864 44 5555444      4899999999887 34432222222     266 8999999988 45


Q ss_pred             cccCCCCcchHHHHHHhcccccccCCCCccccEEEecCCCccee--cCCCCCCCccEEEEeccEeeeecCCCCccCCCCC
Q 048322          296 SGKLPELLPSLEILVSKCEKLVVSLSSYPRLCRLEVDECKELVC--RTPIDSKLIKFMTISNSSLDMIGCKGMLYDSQAG  373 (498)
Q Consensus       296 ~~~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~l  373 (498)
                      .+.+|.                 .+..++ |++|++++|.....  .....+++|+.|++++|.+.....          
T Consensus       187 ~~~~~~-----------------~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~----------  238 (313)
T 1ogq_A          187 TGKIPP-----------------TFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG----------  238 (313)
T ss_dssp             EEECCG-----------------GGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG----------
T ss_pred             eccCCh-----------------HHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecC----------
Confidence            446665                 233344 88888888765542  223457888888888876542110          


Q ss_pred             CcCCCCCCCCCeEEecCC--------CCCCCCCccEEEEcCCCCCCCccccCCCCccCCCCCCcCeEeeecCCCCCcCC
Q 048322          374 SSLPKPMTTTNVLEFGKL--------LEPGFQILETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPNLTLFP  444 (498)
Q Consensus       374 ~~lp~~l~~L~~L~i~~~--------~~~~lp~L~~L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~~l~~lp  444 (498)
                       .+ ..+++|++|++++|        .+..+++|+.|+++++. +++     .+|.. ..+++|+.|++.+++.+...|
T Consensus       239 -~~-~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~-----~ip~~-~~l~~L~~l~l~~N~~lc~~p  308 (313)
T 1ogq_A          239 -KV-GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN-LCG-----EIPQG-GNLQRFDVSAYANNKCLCGSP  308 (313)
T ss_dssp             -GC-CCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSE-EEE-----ECCCS-TTGGGSCGGGTCSSSEEESTT
T ss_pred             -cc-cccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCc-ccc-----cCCCC-ccccccChHHhcCCCCccCCC
Confidence             11 23478888888888        24567789999998864 331     12655 789999999999987666544

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.65  E-value=2.7e-15  Score=145.79  Aligned_cols=255  Identities=14%  Similarity=0.113  Sum_probs=142.5

Q ss_pred             CCCceEEEeecCCCCCCc-cccCCCCCCccEEeEeCCCCCCCC-CC-CCCccccceeeccccccceecCccccCCCCCCC
Q 048322          174 KCIKKVAIRNYGGARFPL-WIGDPLFSKIEFLELENCNNCVSL-PS-LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMP  250 (498)
Q Consensus       174 ~~L~~L~l~~~~~~~~p~-~~~~~~l~~L~~L~l~~c~~~~~l-p~-i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~  250 (498)
                      ++|++|+++++....++. .+.  .+++|++|++++|. +..+ |. ++.+++|++|+++++ .++.+|..+        
T Consensus        54 ~~l~~L~l~~n~i~~~~~~~~~--~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~--------  121 (332)
T 2ft3_A           54 PDTTLLDLQNNDISELRKDDFK--GLQHLYALVLVNNK-ISKIHEKAFSPLRKLQKLYISKN-HLVEIPPNL--------  121 (332)
T ss_dssp             TTCCEEECCSSCCCEECTTTTT--TCTTCCEEECCSSC-CCEECGGGSTTCTTCCEEECCSS-CCCSCCSSC--------
T ss_pred             CCCeEEECCCCcCCccCHhHhh--CCCCCcEEECCCCc-cCccCHhHhhCcCCCCEEECCCC-cCCccCccc--------
Confidence            455666666555544432 333  35566666665542 3333 22 555666666666553 344444321        


Q ss_pred             CCCCceeeccCCCccccccccccCCccccCCCccceeeeccCCCcc-ccCCCCcchHHHHHHhcccccccCCCCccccEE
Q 048322          251 FPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLS-GKLPELLPSLEILVSKCEKLVVSLSSYPRLCRL  329 (498)
Q Consensus       251 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~-~~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~L  329 (498)
                      +++|++|+++++ .+..+.+....     .+++|++|+++++..-. +..|.                 .+..+ +|++|
T Consensus       122 ~~~L~~L~l~~n-~i~~~~~~~~~-----~l~~L~~L~l~~n~l~~~~~~~~-----------------~~~~l-~L~~L  177 (332)
T 2ft3_A          122 PSSLVELRIHDN-RIRKVPKGVFS-----GLRNMNCIEMGGNPLENSGFEPG-----------------AFDGL-KLNYL  177 (332)
T ss_dssp             CTTCCEEECCSS-CCCCCCSGGGS-----SCSSCCEEECCSCCCBGGGSCTT-----------------SSCSC-CCSCC
T ss_pred             cccCCEEECCCC-ccCccCHhHhC-----CCccCCEEECCCCccccCCCCcc-----------------cccCC-ccCEE
Confidence            245666665544 22332221111     25566666665552210 01111                 23334 77888


Q ss_pred             EecCCCcceecCCCCCCCccEEEEeccEeeeecCCCCccCCCCCCcCCCCCCCCCeEEecCC--------CCCCCCCccE
Q 048322          330 EVDECKELVCRTPIDSKLIKFMTISNSSLDMIGCKGMLYDSQAGSSLPKPMTTTNVLEFGKL--------LEPGFQILET  401 (498)
Q Consensus       330 ~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~l~~lp~~l~~L~~L~i~~~--------~~~~lp~L~~  401 (498)
                      ++++|....++... +++|+.|++++|.+......          .+ ..+++|+.|++++|        .+..+++|+.
T Consensus       178 ~l~~n~l~~l~~~~-~~~L~~L~l~~n~i~~~~~~----------~l-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  245 (332)
T 2ft3_A          178 RISEAKLTGIPKDL-PETLNELHLDHNKIQAIELE----------DL-LRYSKLYRLGLGHNQIRMIENGSLSFLPTLRE  245 (332)
T ss_dssp             BCCSSBCSSCCSSS-CSSCSCCBCCSSCCCCCCTT----------SS-TTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCE
T ss_pred             ECcCCCCCccCccc-cCCCCEEECCCCcCCccCHH----------Hh-cCCCCCCEEECCCCcCCcCChhHhhCCCCCCE
Confidence            88887765554433 36888888877633221100          01 23478999999998        1345678999


Q ss_pred             EEEcCCCCCCCccccCCCCccCCCCCCcCeEeeecCCCCCcCCCCCc--------cccccceeeccCchhHhhhccCCCC
Q 048322          402 LVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPNLTLFPEVGL--------PSSLLDLYVNNCPRLKKVCKRDQGK  473 (498)
Q Consensus       402 L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~~l~~lp~~~~--------~~sL~~L~i~~c~~l~~~~~~~~~~  473 (498)
                      |+++++ .++.      +|.++..+++|++|+++++ .++.+|...+        .++|+.|++.++|-......   ..
T Consensus       246 L~L~~N-~l~~------lp~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~---~~  314 (332)
T 2ft3_A          246 LHLDNN-KLSR------VPAGLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQ---PA  314 (332)
T ss_dssp             EECCSS-CCCB------CCTTGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSC---GG
T ss_pred             EECCCC-cCee------cChhhhcCccCCEEECCCC-CCCccChhHccccccccccccccceEeecCcccccccC---cc
Confidence            999886 4443      3888899999999999985 6777765422        35689999999884321111   11


Q ss_pred             CCCCcCCCCeEEEC
Q 048322          474 EWPKIAHIPWVVID  487 (498)
Q Consensus       474 ~~~~i~hi~~~~~~  487 (498)
                      .+..+.++..+.+.
T Consensus       315 ~~~~l~~L~~l~l~  328 (332)
T 2ft3_A          315 TFRCVTDRLAIQFG  328 (332)
T ss_dssp             GGTTBCCSTTEEC-
T ss_pred             cccccchhhhhhcc
Confidence            23345556666554

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.64  E-value=4.5e-15  Score=154.93  Aligned_cols=125  Identities=12%  Similarity=0.099  Sum_probs=89.2

Q ss_pred             CCcccEEEEecCCCCCCcChhhHHHhhhcCCCCCCCceEEEeecCCCCC-CccccCCCCCCccEEeEeCCCCCCCCCCCC
Q 048322          141 LNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARF-PLWIGDPLFSKIEFLELENCNNCVSLPSLG  219 (498)
Q Consensus       141 ~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~-p~~~~~~~l~~L~~L~l~~c~~~~~lp~i~  219 (498)
                      .+++.|+++.+.-..         .....+..+++|++|+++++....+ |..+.  .+++|++|++++| .++.+|.. 
T Consensus        52 ~~L~~L~Ls~N~i~~---------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~Ls~N-~l~~lp~~-  118 (562)
T 3a79_B           52 PRTKALSLSQNSISE---------LRMPDISFLSELRVLRLSHNRIRSLDFHVFL--FNQDLEYLDVSHN-RLQNISCC-  118 (562)
T ss_dssp             TTCCEEECCSSCCCC---------CCGGGTTTCTTCCEEECCSCCCCEECTTTTT--TCTTCCEEECTTS-CCCEECSC-
T ss_pred             CCcCEEECCCCCccc---------cChhhhccCCCccEEECCCCCCCcCCHHHhC--CCCCCCEEECCCC-cCCccCcc-
Confidence            689999998775211         0124566779999999999987776 55565  5899999999996 57788876 


Q ss_pred             CccccceeeccccccceecC--ccccCCCCCCCCCCCceeeccCCCccccccccccCCccccCCCcc--ceeeeccCCC
Q 048322          220 LLSSLKHLAVKGLKKLKSIE--SEVYGEGFSMPFPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRL--QELSVVKCPK  294 (498)
Q Consensus       220 ~l~~L~~L~l~~~~~l~~i~--~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L--~~L~l~~c~~  294 (498)
                      .+++|++|+++++. +..++  ..+.      .+++|++|+++++ .+....        +..+++|  ++|++++|..
T Consensus       119 ~l~~L~~L~Ls~N~-l~~l~~p~~~~------~l~~L~~L~L~~n-~l~~~~--------~~~l~~L~L~~L~L~~n~l  181 (562)
T 3a79_B          119 PMASLRHLDLSFND-FDVLPVCKEFG------NLTKLTFLGLSAA-KFRQLD--------LLPVAHLHLSCILLDLVSY  181 (562)
T ss_dssp             CCTTCSEEECCSSC-CSBCCCCGGGG------GCTTCCEEEEECS-BCCTTT--------TGGGTTSCEEEEEEEESSC
T ss_pred             ccccCCEEECCCCC-ccccCchHhhc------ccCcccEEecCCC-ccccCc--------hhhhhhceeeEEEeecccc
Confidence            89999999999864 66654  3333      4899999999875 333211        1114555  8888888743

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.63  E-value=3.2e-16  Score=151.26  Aligned_cols=231  Identities=11%  Similarity=0.075  Sum_probs=154.6

Q ss_pred             CCCCCceEEEeecCCCCCC-ccccCCCCCCccEEeEeCCCCCCCCCCCCCccccceeeccccccceecCccccCCCCCCC
Q 048322          172 PHKCIKKVAIRNYGGARFP-LWIGDPLFSKIEFLELENCNNCVSLPSLGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMP  250 (498)
Q Consensus       172 ~~~~L~~L~l~~~~~~~~p-~~~~~~~l~~L~~L~l~~c~~~~~lp~i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~  250 (498)
                      .+++|++|+++++....++ ..+.  .+++|++|++++| .+..+++++.+++|++|+++++ .++.++.          
T Consensus        32 ~~~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~Ls~n-~l~~~~~~~~l~~L~~L~Ls~n-~l~~l~~----------   97 (317)
T 3o53_A           32 SAWNVKELDLSGNPLSQISAADLA--PFTKLELLNLSSN-VLYETLDLESLSTLRTLDLNNN-YVQELLV----------   97 (317)
T ss_dssp             TGGGCSEEECTTSCCCCCCHHHHT--TCTTCCEEECTTS-CCEEEEEETTCTTCCEEECCSS-EEEEEEE----------
T ss_pred             cCCCCCEEECcCCccCcCCHHHhh--CCCcCCEEECCCC-cCCcchhhhhcCCCCEEECcCC-ccccccC----------
Confidence            3578899999888877765 4555  5888999999886 4555556888889999999885 4666652          


Q ss_pred             CCCCceeeccCCCccccccccccCCccccCCCccceeeeccCCCccccCCCCcchHHHHHHhcccccccCCCCccccEEE
Q 048322          251 FPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSYPRLCRLE  330 (498)
Q Consensus       251 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~L~  330 (498)
                      .++|++|+++++ .+......        .+++|++|++++| .++ .++.                ..+..+++|++|+
T Consensus        98 ~~~L~~L~l~~n-~l~~~~~~--------~~~~L~~L~l~~N-~l~-~~~~----------------~~~~~l~~L~~L~  150 (317)
T 3o53_A           98 GPSIETLHAANN-NISRVSCS--------RGQGKKNIYLANN-KIT-MLRD----------------LDEGCRSRVQYLD  150 (317)
T ss_dssp             CTTCCEEECCSS-CCSEEEEC--------CCSSCEEEECCSS-CCC-SGGG----------------BCTGGGSSEEEEE
T ss_pred             CCCcCEEECCCC-ccCCcCcc--------ccCCCCEEECCCC-CCC-Cccc----------------hhhhccCCCCEEE
Confidence            578888888876 44444321        1788899999887 443 2221                0334467788888


Q ss_pred             ecCCCcceecC--C-CCCCCccEEEEeccEeeeecCCCCccCCCCCCcCCC--CCCCCCeEEecCC-------CCCCCCC
Q 048322          331 VDECKELVCRT--P-IDSKLIKFMTISNSSLDMIGCKGMLYDSQAGSSLPK--PMTTTNVLEFGKL-------LEPGFQI  398 (498)
Q Consensus       331 l~~~~~~~~~~--~-~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~l~~lp~--~l~~L~~L~i~~~-------~~~~lp~  398 (498)
                      +++|.......  . ..+++|+.|++++|.+..               +|.  .+++|+.|++++|       .+..+++
T Consensus       151 Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~---------------~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~  215 (317)
T 3o53_A          151 LKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD---------------VKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAG  215 (317)
T ss_dssp             CTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE---------------EECCCCCTTCCEEECCSSCCCEECGGGGGGTT
T ss_pred             CCCCCCCcccHHHHhhccCcCCEEECCCCcCcc---------------cccccccccCCEEECCCCcCCcchhhhcccCc
Confidence            88876655321  1 136788888887763322               221  2467788888877       2345677


Q ss_pred             ccEEEEcCCCCCCCccccCCCCccCCCCCCcCeEeeecCCCC-CcCCCC-CccccccceeeccCchhHh
Q 048322          399 LETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPNL-TLFPEV-GLPSSLLDLYVNNCPRLKK  465 (498)
Q Consensus       399 L~~L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~~l-~~lp~~-~~~~sL~~L~i~~c~~l~~  465 (498)
                      |+.|+++++ .++.+      |..+..+++|++|++++++.. ..+|.. ...+.|+.|++.+|+.++.
T Consensus       216 L~~L~L~~N-~l~~l------~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~  277 (317)
T 3o53_A          216 VTWISLRNN-KLVLI------EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTG  277 (317)
T ss_dssp             CSEEECTTS-CCCEE------CTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHS
T ss_pred             ccEEECcCC-cccch------hhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccC
Confidence            888988885 45433      777888899999999987544 233332 2236778888877776653

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.62  E-value=4.7e-15  Score=144.07  Aligned_cols=82  Identities=13%  Similarity=0.239  Sum_probs=42.4

Q ss_pred             CCCCCCCceEEEeecCCCCC-CccccCCCCCCccEEeEeCCCCCCCCCC-CCCccccceeeccccccceecCccccCCCC
Q 048322          170 LQPHKCIKKVAIRNYGGARF-PLWIGDPLFSKIEFLELENCNNCVSLPS-LGLLSSLKHLAVKGLKKLKSIESEVYGEGF  247 (498)
Q Consensus       170 l~~~~~L~~L~l~~~~~~~~-p~~~~~~~l~~L~~L~l~~c~~~~~lp~-i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~  247 (498)
                      +..+++|++|+++++....+ |..+.  .+++|++|++++| .++.+|. +.  ++|++|+++++ .+..++...+.   
T Consensus        74 ~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n-~l~~l~~~~~--~~L~~L~l~~n-~i~~~~~~~~~---  144 (332)
T 2ft3_A           74 FKGLQHLYALVLVNNKISKIHEKAFS--PLRKLQKLYISKN-HLVEIPPNLP--SSLVELRIHDN-RIRKVPKGVFS---  144 (332)
T ss_dssp             TTTCTTCCEEECCSSCCCEECGGGST--TCTTCCEEECCSS-CCCSCCSSCC--TTCCEEECCSS-CCCCCCSGGGS---
T ss_pred             hhCCCCCcEEECCCCccCccCHhHhh--CcCCCCEEECCCC-cCCccCcccc--ccCCEEECCCC-ccCccCHhHhC---
Confidence            34445666666666555444 33343  3556666666654 3445554 22  55666666553 34444443332   


Q ss_pred             CCCCCCCceeeccCC
Q 048322          248 SMPFPSLKILRFENL  262 (498)
Q Consensus       248 ~~~~~~L~~L~l~~~  262 (498)
                        .+++|+.|+++++
T Consensus       145 --~l~~L~~L~l~~n  157 (332)
T 2ft3_A          145 --GLRNMNCIEMGGN  157 (332)
T ss_dssp             --SCSSCCEEECCSC
T ss_pred             --CCccCCEEECCCC
Confidence              3556666666554

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.61  E-value=1.6e-14  Score=138.66  Aligned_cols=232  Identities=18%  Similarity=0.162  Sum_probs=110.4

Q ss_pred             eEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCC--CCCccccceeeccccccceec---CccccCCCCCCCCC
Q 048322          178 KVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPS--LGLLSSLKHLAVKGLKKLKSI---ESEVYGEGFSMPFP  252 (498)
Q Consensus       178 ~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~--i~~l~~L~~L~l~~~~~l~~i---~~~~~~~~~~~~~~  252 (498)
                      .++.++.+...+|..+    .++|++|++++| .++.+|.  ++.+++|++|+++++ .+..+   +..+.      .++
T Consensus        11 ~l~c~~~~l~~ip~~~----~~~l~~L~L~~n-~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~------~~~   78 (306)
T 2z66_A           11 EIRCNSKGLTSVPTGI----PSSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSSN-GLSFKGCCSQSDF------GTT   78 (306)
T ss_dssp             EEECCSSCCSSCCSCC----CTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS-CCCEEEEEEHHHH------SCS
T ss_pred             EEEcCCCCcccCCCCC----CCCCCEEECCCC-ccCccCHhHhhccccCCEEECCCC-ccCcccCcccccc------ccc
Confidence            4444444455555432    235555665554 3445554  455556666665553 23322   12222      255


Q ss_pred             CCceeeccCCCccccccccccCCccccCCCccceeeeccCCCccccCCCCcchHHHHHHhcccccccCCCCccccEEEec
Q 048322          253 SLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSYPRLCRLEVD  332 (498)
Q Consensus       253 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~L~l~  332 (498)
                      +|++|+++++ .+..+...      +..+++|++|+++++ .++ .++.               ...+..+++|++|+++
T Consensus        79 ~L~~L~Ls~n-~i~~l~~~------~~~l~~L~~L~l~~n-~l~-~~~~---------------~~~~~~l~~L~~L~l~  134 (306)
T 2z66_A           79 SLKYLDLSFN-GVITMSSN------FLGLEQLEHLDFQHS-NLK-QMSE---------------FSVFLSLRNLIYLDIS  134 (306)
T ss_dssp             CCCEEECCSC-SEEEEEEE------EETCTTCCEEECTTS-EEE-SSTT---------------TTTTTTCTTCCEEECT
T ss_pred             ccCEEECCCC-ccccChhh------cCCCCCCCEEECCCC-ccc-cccc---------------chhhhhccCCCEEECC
Confidence            5666665554 22222211      111556666666555 222 2221               0023335555555555


Q ss_pred             CCCcceecC--CCCCCCccEEEEeccEeeeecCCCCccCCCCCCcCCCCCCCCCeEEecCC--------CCCCCCCccEE
Q 048322          333 ECKELVCRT--PIDSKLIKFMTISNSSLDMIGCKGMLYDSQAGSSLPKPMTTTNVLEFGKL--------LEPGFQILETL  402 (498)
Q Consensus       333 ~~~~~~~~~--~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~l~~lp~~l~~L~~L~i~~~--------~~~~lp~L~~L  402 (498)
                      +|.......  ...+++|++|++++|.+.....+          ..-..+++|+.|++++|        .+..+++|+.|
T Consensus       135 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~----------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  204 (306)
T 2z66_A          135 HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP----------DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL  204 (306)
T ss_dssp             TSCCEECSTTTTTTCTTCCEEECTTCEEGGGEEC----------SCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             CCcCCccchhhcccCcCCCEEECCCCccccccch----------hHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEE
Confidence            554433211  22345555555555533210000          00022255666666655        23456667777


Q ss_pred             EEcCCCCCCCccccCCCCccCCCCCCcCeEeeecCCCCCcCCCC--CccccccceeeccCc
Q 048322          403 VIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPNLTLFPEV--GLPSSLLDLYVNNCP  461 (498)
Q Consensus       403 ~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~~l~~lp~~--~~~~sL~~L~i~~c~  461 (498)
                      +++++. ++.+.     +..+..+++|++|++++|......|..  .++++|+.|++++++
T Consensus       205 ~L~~N~-l~~~~-----~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~  259 (306)
T 2z66_A          205 NMSHNN-FFSLD-----TFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND  259 (306)
T ss_dssp             ECTTSC-CSBCC-----SGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred             ECCCCc-cCccC-----hhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence            777743 33221     335667778888888876433333332  234578888887754

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.61  E-value=1.4e-15  Score=149.22  Aligned_cols=245  Identities=20%  Similarity=0.212  Sum_probs=164.5

Q ss_pred             CCcccEEEEecCCCCCCcChhhHHHh-hhcCCCCCCCceEEEeecCCCCCC-ccccCCCCCCccEEeEeCCCCCCCCCC-
Q 048322          141 LNLHALTLEWGSQFDNSRDVAVEEHV-LDILQPHKCIKKVAIRNYGGARFP-LWIGDPLFSKIEFLELENCNNCVSLPS-  217 (498)
Q Consensus       141 ~~L~~L~L~~~~~~~~~~~~~~~~~~-l~~l~~~~~L~~L~l~~~~~~~~p-~~~~~~~l~~L~~L~l~~c~~~~~lp~-  217 (498)
                      .+|+.|+++.+.-.          .+ .+.+..+++|++|+++++....++ ..+.  .+++|++|++++| .++.+|+ 
T Consensus        52 ~~L~~L~l~~n~i~----------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~Ls~n-~l~~~~~~  118 (353)
T 2z80_A           52 EAVKSLDLSNNRIT----------YISNSDLQRCVNLQALVLTSNGINTIEEDSFS--SLGSLEHLDLSYN-YLSNLSSS  118 (353)
T ss_dssp             TTCCEEECTTSCCC----------EECTTTTTTCTTCCEEECTTSCCCEECTTTTT--TCTTCCEEECCSS-CCSSCCHH
T ss_pred             ccCcEEECCCCcCc----------ccCHHHhccCCCCCEEECCCCccCccCHhhcC--CCCCCCEEECCCC-cCCcCCHh
Confidence            47888888766410          11 124566788899999888776654 4455  5788999998885 5667775 


Q ss_pred             -CCCccccceeeccccccceecCc-cccCCCCCCCCCCCceeeccCCCccccccccccCCccccCCCccceeeeccCCCc
Q 048322          218 -LGLLSSLKHLAVKGLKKLKSIES-EVYGEGFSMPFPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKL  295 (498)
Q Consensus       218 -i~~l~~L~~L~l~~~~~l~~i~~-~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l  295 (498)
                       ++.+++|++|+++++ .++.++. ..+     ..+++|++|+++++..+..+.+.....     +++|++|++++|. +
T Consensus       119 ~~~~l~~L~~L~L~~n-~l~~l~~~~~~-----~~l~~L~~L~l~~n~~~~~~~~~~~~~-----l~~L~~L~l~~n~-l  186 (353)
T 2z80_A          119 WFKPLSSLTFLNLLGN-PYKTLGETSLF-----SHLTKLQILRVGNMDTFTKIQRKDFAG-----LTFLEELEIDASD-L  186 (353)
T ss_dssp             HHTTCTTCSEEECTTC-CCSSSCSSCSC-----TTCTTCCEEEEEESSSCCEECTTTTTT-----CCEEEEEEEEETT-C
T ss_pred             HhCCCccCCEEECCCC-CCcccCchhhh-----ccCCCCcEEECCCCccccccCHHHccC-----CCCCCEEECCCCC-c
Confidence             788888999998885 4666665 333     258888888888775555554322222     7888889888873 4


Q ss_pred             cccCCCCcchHHHHHHhcccccccCCCCccccEEEecCCCcceecCC--CCCCCccEEEEeccEeeeecCCCCccCCCCC
Q 048322          296 SGKLPELLPSLEILVSKCEKLVVSLSSYPRLCRLEVDECKELVCRTP--IDSKLIKFMTISNSSLDMIGCKGMLYDSQAG  373 (498)
Q Consensus       296 ~~~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~l  373 (498)
                      .+..|.                 .+..+++|++|++++|....++..  ..+++|+.|++++|.+.......+       
T Consensus       187 ~~~~~~-----------------~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l-------  242 (353)
T 2z80_A          187 QSYEPK-----------------SLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSEL-------  242 (353)
T ss_dssp             CEECTT-----------------TTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC---------
T ss_pred             CccCHH-----------------HHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccccc-------
Confidence            434444                 566688999999999876544322  137899999999885443221111       


Q ss_pred             CcCCCCCCCCCeEEecCC------------CCCCCCCccEEEEcCCCCCCCccccCCCCccC-CCCCCcCeEeeecCCCC
Q 048322          374 SSLPKPMTTTNVLEFGKL------------LEPGFQILETLVIGNSEQLKPWRQGRGLSMGF-QRLTSLQSLKIWNCPNL  440 (498)
Q Consensus       374 ~~lp~~l~~L~~L~i~~~------------~~~~lp~L~~L~l~~c~~L~~l~~l~~l~~~l-~~l~~L~~L~l~~c~~l  440 (498)
                      .. ....+.++.+++.++            .+..+++|+.|+++++ .++.+      |.++ ..+++|++|++++++-.
T Consensus       243 ~~-~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i------~~~~~~~l~~L~~L~L~~N~~~  314 (353)
T 2z80_A          243 ST-GETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN-QLKSV------PDGIFDRLTSLQKIWLHTNPWD  314 (353)
T ss_dssp             -----CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCC------CTTTTTTCTTCCEEECCSSCBC
T ss_pred             cc-ccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCC-CCCcc------CHHHHhcCCCCCEEEeeCCCcc
Confidence            00 012256777777776            2457889999999986 45443      7774 88999999999998644


Q ss_pred             Cc
Q 048322          441 TL  442 (498)
Q Consensus       441 ~~  442 (498)
                      ..
T Consensus       315 ~~  316 (353)
T 2z80_A          315 CS  316 (353)
T ss_dssp             CC
T ss_pred             Cc
Confidence            43

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.61  E-value=6.1e-16  Score=158.14  Aligned_cols=235  Identities=10%  Similarity=0.050  Sum_probs=155.0

Q ss_pred             HHHhhhcCCCCCCCceEEEeecCCCCCC-ccccCCCCCCccEEeEeCCCCCCCCCCCCCccccceeeccccccceecCcc
Q 048322          163 EEHVLDILQPHKCIKKVAIRNYGGARFP-LWIGDPLFSKIEFLELENCNNCVSLPSLGLLSSLKHLAVKGLKKLKSIESE  241 (498)
Q Consensus       163 ~~~~l~~l~~~~~L~~L~l~~~~~~~~p-~~~~~~~l~~L~~L~l~~c~~~~~lp~i~~l~~L~~L~l~~~~~l~~i~~~  241 (498)
                      ...+......+++|++|+++++....+| ..+.  .+++|++|+|++|. +...++++.+++|++|++++| .++.++. 
T Consensus        23 ~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls~N~-l~~~~~l~~l~~L~~L~Ls~N-~l~~l~~-   97 (487)
T 3oja_A           23 KQALASLRQSAWNVKELDLSGNPLSQISAADLA--PFTKLELLNLSSNV-LYETLDLESLSTLRTLDLNNN-YVQELLV-   97 (487)
T ss_dssp             HHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGT--TCTTCCEEECTTSC-CEEEEECTTCTTCCEEECCSS-EEEEEEE-
T ss_pred             HHHHHHhcccCCCccEEEeeCCcCCCCCHHHHh--CCCCCCEEEeeCCC-CCCCcccccCCCCCEEEecCC-cCCCCCC-
Confidence            3344444455679999999999887775 4566  68999999999864 555556899999999999986 5776663 


Q ss_pred             ccCCCCCCCCCCCceeeccCCCccccccccccCCccccCCCccceeeeccCCCccccCCCCcchHHHHHHhcccccccCC
Q 048322          242 VYGEGFSMPFPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLS  321 (498)
Q Consensus       242 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~  321 (498)
                               .++|+.|+++++ .+....+.        .+++|+.|++++| .+++..|.                 .+.
T Consensus        98 ---------~~~L~~L~L~~N-~l~~~~~~--------~l~~L~~L~L~~N-~l~~~~~~-----------------~~~  141 (487)
T 3oja_A           98 ---------GPSIETLHAANN-NISRVSCS--------RGQGKKNIYLANN-KITMLRDL-----------------DEG  141 (487)
T ss_dssp             ---------CTTCCEEECCSS-CCCCEEEC--------CCSSCEEEECCSS-CCCSGGGB-----------------CGG
T ss_pred             ---------CCCcCEEECcCC-cCCCCCcc--------ccCCCCEEECCCC-CCCCCCch-----------------hhc
Confidence                     579999999887 44444321        1789999999988 44423332                 334


Q ss_pred             CCccccEEEecCCCcceec-C-CC-CCCCccEEEEeccEeeeecCCCCccCCCCCCcCCCCCCCCCeEEecCC-------
Q 048322          322 SYPRLCRLEVDECKELVCR-T-PI-DSKLIKFMTISNSSLDMIGCKGMLYDSQAGSSLPKPMTTTNVLEFGKL-------  391 (498)
Q Consensus       322 ~l~~L~~L~l~~~~~~~~~-~-~~-~~~~L~~L~l~~~~l~~~~~~~l~~~~~~l~~lp~~l~~L~~L~i~~~-------  391 (498)
                      .+++|+.|++++|...... . .. .+++|+.|++++|.+.....            . ..+++|+.|++++|       
T Consensus       142 ~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~------------~-~~l~~L~~L~Ls~N~l~~~~~  208 (487)
T 3oja_A          142 CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG------------Q-VVFAKLKTLDLSSNKLAFMGP  208 (487)
T ss_dssp             GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC------------C-CCCTTCCEEECCSSCCCEECG
T ss_pred             CCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc------------c-ccCCCCCEEECCCCCCCCCCH
Confidence            4678888888888765532 2 22 36788888888774332110            0 12467777777777       


Q ss_pred             CCCCCCCccEEEEcCCCCCCCccccCCCCccCCCCCCcCeEeeecCCCC-CcCCCC-Cccccccceeec
Q 048322          392 LEPGFQILETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPNL-TLFPEV-GLPSSLLDLYVN  458 (498)
Q Consensus       392 ~~~~lp~L~~L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~~l-~~lp~~-~~~~sL~~L~i~  458 (498)
                      .+..+++|+.|+++++ .++.+      |.++..+++|+.|++++|+.. ..+|.. ...+.|+.+.+.
T Consensus       209 ~~~~l~~L~~L~Ls~N-~l~~l------p~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          209 EFQSAAGVTWISLRNN-KLVLI------EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             GGGGGTTCSEEECTTS-CCCEE------CTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred             hHcCCCCccEEEecCC-cCccc------chhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence            2334566888888774 34433      777778888888888886544 233321 223445555554

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.61  E-value=9.5e-15  Score=152.67  Aligned_cols=238  Identities=17%  Similarity=0.194  Sum_probs=140.7

Q ss_pred             hcCCCCCCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCCCCCccccceeeccccccceecCccccCCCC
Q 048322          168 DILQPHKCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPSLGLLSSLKHLAVKGLKKLKSIESEVYGEGF  247 (498)
Q Consensus       168 ~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~  247 (498)
                      +.+..+++|+.|+++++....+|.++.  .+ +|++|++++| .+..+|. +.+++|+.|++.++.....++.       
T Consensus       276 ~~~~~l~~L~~L~l~~~~l~~l~~~~~--~~-~L~~L~l~~n-~~~~l~~-~~l~~L~~L~l~~n~~~~~~~~-------  343 (570)
T 2z63_A          276 DLFNCLTNVSSFSLVSVTIERVKDFSY--NF-GWQHLELVNC-KFGQFPT-LKLKSLKRLTFTSNKGGNAFSE-------  343 (570)
T ss_dssp             TTTGGGTTCSEEEEESCEECSCCBCCS--CC-CCSEEEEESC-BCSSCCB-CBCSSCCEEEEESCBSCCBCCC-------
T ss_pred             hhhcCcCcccEEEecCccchhhhhhhc--cC-CccEEeeccC-cccccCc-ccccccCEEeCcCCcccccccc-------
Confidence            334456778888888877777787776  35 7888888876 3446665 5677888888877653322221       


Q ss_pred             CCCCCCCceeeccCCCcccccc--ccccCCccccCCCccceeeeccCCCccccCCCCcchHHHHHHhcccccccCCCCcc
Q 048322          248 SMPFPSLKILRFENLPEWWHWD--TDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSYPR  325 (498)
Q Consensus       248 ~~~~~~L~~L~l~~~~~l~~~~--~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~~l~~  325 (498)
                       ..+++|+.|+++++ .+....  +..     +..+++|++|++++|. +. .+|.                 .+..+++
T Consensus       344 -~~~~~L~~L~l~~n-~l~~~~~~~~~-----~~~~~~L~~L~l~~n~-l~-~~~~-----------------~~~~l~~  397 (570)
T 2z63_A          344 -VDLPSLEFLDLSRN-GLSFKGCCSQS-----DFGTTSLKYLDLSFNG-VI-TMSS-----------------NFLGLEQ  397 (570)
T ss_dssp             -CBCTTCCEEECCSS-CCBEEEEEEHH-----HHTCSCCCEEECCSCS-EE-EEEE-----------------EEETCTT
T ss_pred             -ccCCCCCEEeCcCC-ccCcccccccc-----ccccCccCEEECCCCc-cc-cccc-----------------cccccCC
Confidence             24778888888766 233221  111     1227788888887773 33 2332                 2334566


Q ss_pred             ccEEEecCCCcceec---CCCCCCCccEEEEeccEeeeecCCCCccCCCCCCcCCCCCCCCCeEEecCC---------CC
Q 048322          326 LCRLEVDECKELVCR---TPIDSKLIKFMTISNSSLDMIGCKGMLYDSQAGSSLPKPMTTTNVLEFGKL---------LE  393 (498)
Q Consensus       326 L~~L~l~~~~~~~~~---~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~l~~lp~~l~~L~~L~i~~~---------~~  393 (498)
                      |++|++++|......   ....+++|++|++++|.+.....           ..-..+++|+.|++++|         .+
T Consensus       398 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-----------~~~~~l~~L~~L~l~~n~l~~~~~p~~~  466 (570)
T 2z63_A          398 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN-----------GIFNGLSSLEVLKMAGNSFQENFLPDIF  466 (570)
T ss_dssp             CCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCT-----------TTTTTCTTCCEEECTTCEEGGGEECSCC
T ss_pred             CCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccch-----------hhhhcCCcCcEEECcCCcCccccchhhh
Confidence            667777666544322   22346667777776653322110           00123366777777766         24


Q ss_pred             CCCCCccEEEEcCCCCCCCccccCCCCccCCCCCCcCeEeeecCCCCCcCCCC--CccccccceeeccCc
Q 048322          394 PGFQILETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPNLTLFPEV--GLPSSLLDLYVNNCP  461 (498)
Q Consensus       394 ~~lp~L~~L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~~l~~lp~~--~~~~sL~~L~i~~c~  461 (498)
                      ..+++|+.|++++|. ++.+     .|..+..+++|++|++++| .++.+|..  ...++|+.|+++++|
T Consensus       467 ~~l~~L~~L~l~~n~-l~~~-----~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~  529 (570)
T 2z63_A          467 TELRNLTFLDLSQCQ-LEQL-----SPTAFNSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLHTNP  529 (570)
T ss_dssp             TTCTTCCEEECTTSC-CCEE-----CTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             hcccCCCEEECCCCc-cccC-----ChhhhhcccCCCEEeCCCC-cCCCCCHHHhhcccCCcEEEecCCc
Confidence            456677777777754 3221     1566777778888888775 55666543  234677778777644

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.59  E-value=1.6e-14  Score=152.85  Aligned_cols=116  Identities=17%  Similarity=0.130  Sum_probs=84.3

Q ss_pred             hHHHhhcccCCcccEEEEecCCCCCCcChhhHHHhhhcCCCCCCCceEEEeecCCCCCCc-cccCCCCCCccEEeEeCCC
Q 048322          132 AREAALCEKLNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPL-WIGDPLFSKIEFLELENCN  210 (498)
Q Consensus       132 ~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~-~~~~~~l~~L~~L~l~~c~  210 (498)
                      .....+.++++|++|+|+++.-      ....   ...+..+++|++|++++|....+|. ++.  .+++|++|++++| 
T Consensus        67 l~~~~f~~l~~L~~L~Ls~N~i------~~i~---~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~--~L~~L~~L~Ls~N-  134 (635)
T 4g8a_A           67 LGSYSFFSFPELQVLDLSRCEI------QTIE---DGAYQSLSHLSTLILTGNPIQSLALGAFS--GLSSLQKLVAVET-  134 (635)
T ss_dssp             ECTTTTTTCTTCCEEECTTCCC------CEEC---TTTTTTCTTCCEEECTTCCCCEECGGGGT--TCTTCCEEECTTS-
T ss_pred             CCHHHHhCCCCCCEEECCCCcC------CCcC---hhHhcCCCCCCEEEccCCcCCCCCHHHhc--CCCCCCEEECCCC-
Confidence            3445678899999999987741      1111   1235566899999999999888875 455  5899999999996 


Q ss_pred             CCCCCCC--CCCccccceeeccccccceec--CccccCCCCCCCCCCCceeeccCCCcccc
Q 048322          211 NCVSLPS--LGLLSSLKHLAVKGLKKLKSI--ESEVYGEGFSMPFPSLKILRFENLPEWWH  267 (498)
Q Consensus       211 ~~~~lp~--i~~l~~L~~L~l~~~~~l~~i--~~~~~~~~~~~~~~~L~~L~l~~~~~l~~  267 (498)
                      .++.+|+  ++.+++|++|+++++ .+..+  |..+.      .+++|++|+++++ .++.
T Consensus       135 ~l~~l~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~------~l~~L~~L~L~~N-~l~~  187 (635)
T 4g8a_A          135 NLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFS------NLTNLEHLDLSSN-KIQS  187 (635)
T ss_dssp             CCCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCGGGG------GCTTCCEEECCSS-CCCE
T ss_pred             cCCCCChhhhhcCcccCeeccccC-ccccCCCchhhc------cchhhhhhcccCc-cccc
Confidence            5777775  899999999999985 35443  33222      4889999999876 3443

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.59  E-value=1.6e-14  Score=138.68  Aligned_cols=216  Identities=13%  Similarity=0.100  Sum_probs=147.6

Q ss_pred             CCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCC---CC-CCCccccceeeccccccceecCccccCCCCCC
Q 048322          174 KCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSL---PS-LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSM  249 (498)
Q Consensus       174 ~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l---p~-i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~  249 (498)
                      ++|++|+++++....+|..+.. .+++|++|++++| .+..+   |. +..+++|++|+++++ .+..++..+.+     
T Consensus        28 ~~l~~L~L~~n~l~~i~~~~~~-~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~l~~~~~~-----   99 (306)
T 2z66_A           28 SSATRLELESNKLQSLPHGVFD-KLTQLTKLSLSSN-GLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLG-----   99 (306)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTT-TCTTCSEEECCSS-CCCEEEEEEHHHHSCSCCCEEECCSC-SEEEEEEEEET-----
T ss_pred             CCCCEEECCCCccCccCHhHhh-ccccCCEEECCCC-ccCcccCcccccccccccCEEECCCC-ccccChhhcCC-----
Confidence            6889999999888888876422 5889999999886 44433   33 556889999999885 47777765543     


Q ss_pred             CCCCCceeeccCCCccccccc-cccCCccccCCCccceeeeccCCCccccCCCCcchHHHHHHhcccccccCCCCccccE
Q 048322          250 PFPSLKILRFENLPEWWHWDT-DIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSYPRLCR  328 (498)
Q Consensus       250 ~~~~L~~L~l~~~~~l~~~~~-~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~  328 (498)
                       +++|++|+++++ .++.+.. ..     +..+++|++|++++|. +.+..|.                 .+..+++|++
T Consensus       100 -l~~L~~L~l~~n-~l~~~~~~~~-----~~~l~~L~~L~l~~n~-l~~~~~~-----------------~~~~l~~L~~  154 (306)
T 2z66_A          100 -LEQLEHLDFQHS-NLKQMSEFSV-----FLSLRNLIYLDISHTH-TRVAFNG-----------------IFNGLSSLEV  154 (306)
T ss_dssp             -CTTCCEEECTTS-EEESSTTTTT-----TTTCTTCCEEECTTSC-CEECSTT-----------------TTTTCTTCCE
T ss_pred             -CCCCCEEECCCC-cccccccchh-----hhhccCCCEEECCCCc-CCccchh-----------------hcccCcCCCE
Confidence             889999999876 3444331 22     2338899999999884 4323333                 4556778888


Q ss_pred             EEecCCCcce--ec-CCCCCCCccEEEEeccEeeeecCCCCccCCCCCCcCCCCCCCCCeEEecCC--------CCCCCC
Q 048322          329 LEVDECKELV--CR-TPIDSKLIKFMTISNSSLDMIGCKGMLYDSQAGSSLPKPMTTTNVLEFGKL--------LEPGFQ  397 (498)
Q Consensus       329 L~l~~~~~~~--~~-~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~l~~lp~~l~~L~~L~i~~~--------~~~~lp  397 (498)
                      |++++|....  .+ ....+++|+.|++++|.+......          .+ ..+++|+.|++++|        .+..++
T Consensus       155 L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~----------~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~  223 (306)
T 2z66_A          155 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT----------AF-NSLSSLQVLNMSHNNFFSLDTFPYKCLN  223 (306)
T ss_dssp             EECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTT----------TT-TTCTTCCEEECTTSCCSBCCSGGGTTCT
T ss_pred             EECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHH----------Hh-cCCCCCCEEECCCCccCccChhhccCcc
Confidence            8888886543  23 344578888888887743321110          00 23478888888888        245678


Q ss_pred             CccEEEEcCCCCCCCccccCCCCccCCCC-CCcCeEeeecCCC
Q 048322          398 ILETLVIGNSEQLKPWRQGRGLSMGFQRL-TSLQSLKIWNCPN  439 (498)
Q Consensus       398 ~L~~L~l~~c~~L~~l~~l~~l~~~l~~l-~~L~~L~l~~c~~  439 (498)
                      +|+.|+++++. ++..     .|..+..+ ++|++|++++++-
T Consensus       224 ~L~~L~L~~N~-l~~~-----~~~~~~~~~~~L~~L~L~~N~~  260 (306)
T 2z66_A          224 SLQVLDYSLNH-IMTS-----KKQELQHFPSSLAFLNLTQNDF  260 (306)
T ss_dssp             TCCEEECTTSC-CCBC-----SSSSCCCCCTTCCEEECTTCCE
T ss_pred             cCCEeECCCCC-Cccc-----CHHHHHhhhccCCEEEccCCCe
Confidence            89999999864 4321     26677777 4999999998753

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.58  E-value=7.2e-14  Score=132.57  Aligned_cols=146  Identities=14%  Similarity=0.131  Sum_probs=76.4

Q ss_pred             ceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCC--CCCccccceeeccccccceecCccccCCCCCCCCCCC
Q 048322          177 KKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPS--LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSL  254 (498)
Q Consensus       177 ~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~--i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L  254 (498)
                      +.++.++.+...+|..+    .++|++|+++++ .++.+|+  ++.+++|++|+++++ .++.++...+.     .+++|
T Consensus        14 ~~~~c~~~~l~~ip~~~----~~~l~~L~l~~n-~i~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~-----~l~~L   82 (285)
T 1ozn_A           14 VTTSCPQQGLQAVPVGI----PAASQRIFLHGN-RISHVPAASFRACRNLTILWLHSN-VLARIDAAAFT-----GLALL   82 (285)
T ss_dssp             CEEECCSSCCSSCCTTC----CTTCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTT-----TCTTC
T ss_pred             eEEEcCcCCcccCCcCC----CCCceEEEeeCC-cCCccCHHHcccCCCCCEEECCCC-ccceeCHhhcC-----CccCC
Confidence            45555555555555432    346666666664 3444443  666666777766664 35555332222     36666


Q ss_pred             ceeeccCCCccccccccccCCccccCCCccceeeeccCCCccccCCCCcchHHHHHHhcccccccCCCCccccEEEecCC
Q 048322          255 KILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSYPRLCRLEVDEC  334 (498)
Q Consensus       255 ~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~L~l~~~  334 (498)
                      ++|+++++..+..+.+.....     +++|++|++++| .+.+..|.                 .+..+++|++|++++|
T Consensus        83 ~~L~l~~n~~l~~~~~~~~~~-----l~~L~~L~l~~n-~l~~~~~~-----------------~~~~l~~L~~L~l~~n  139 (285)
T 1ozn_A           83 EQLDLSDNAQLRSVDPATFHG-----LGRLHTLHLDRC-GLQELGPG-----------------LFRGLAALQYLYLQDN  139 (285)
T ss_dssp             CEEECCSCTTCCCCCTTTTTT-----CTTCCEEECTTS-CCCCCCTT-----------------TTTTCTTCCEEECCSS
T ss_pred             CEEeCCCCCCccccCHHHhcC-----CcCCCEEECCCC-cCCEECHh-----------------HhhCCcCCCEEECCCC
Confidence            666666654344433222222     666667766666 23312222                 3444566666666666


Q ss_pred             CcceecC--CCCCCCccEEEEecc
Q 048322          335 KELVCRT--PIDSKLIKFMTISNS  356 (498)
Q Consensus       335 ~~~~~~~--~~~~~~L~~L~l~~~  356 (498)
                      ....++.  ...+++|+.|++++|
T Consensus       140 ~l~~~~~~~~~~l~~L~~L~l~~n  163 (285)
T 1ozn_A          140 ALQALPDDTFRDLGNLTHLFLHGN  163 (285)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cccccCHhHhccCCCccEEECCCC
Confidence            5444332  223556666666554

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.56  E-value=9.8e-14  Score=128.02  Aligned_cols=201  Identities=16%  Similarity=0.143  Sum_probs=110.4

Q ss_pred             CccEEeEeCCCCCCCCCC--CCCccccceeeccccccceecCccccCCCCCCCCCCCceeeccCCCccccccccccCCcc
Q 048322          200 KIEFLELENCNNCVSLPS--LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFENLPEWWHWDTDIKGNVH  277 (498)
Q Consensus       200 ~L~~L~l~~c~~~~~lp~--i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~  277 (498)
                      +|++|++++| .++.+|+  ++.+++|++|+++++..++.++...+.     .+++|++|+++++..++.+.++....  
T Consensus        32 ~l~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~-----~l~~L~~L~l~~~n~l~~i~~~~f~~--  103 (239)
T 2xwt_C           32 STQTLKLIET-HLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFY-----NLSKVTHIEIRNTRNLTYIDPDALKE--  103 (239)
T ss_dssp             TCCEEEEESC-CCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEE-----SCTTCCEEEEEEETTCCEECTTSEEC--
T ss_pred             cccEEEEeCC-cceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcC-----CCcCCcEEECCCCCCeeEcCHHHhCC--
Confidence            5666666664 3455543  556666666666665445555553332     35666666665533444443222222  


Q ss_pred             ccCCCccceeeeccCCCccccCCCCcchHHHHHHhcccccccCCCCccccEEEecCC-CcceecC--CCCCCCcc-EEEE
Q 048322          278 VDIFPRLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSYPRLCRLEVDEC-KELVCRT--PIDSKLIK-FMTI  353 (498)
Q Consensus       278 ~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~L~l~~~-~~~~~~~--~~~~~~L~-~L~l  353 (498)
                         +++|++|++++| .++ .+|. +.              .++.+..|++|++++| ....++.  ...+++|+ .|++
T Consensus       104 ---l~~L~~L~l~~n-~l~-~lp~-~~--------------~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l  163 (239)
T 2xwt_C          104 ---LPLLKFLGIFNT-GLK-MFPD-LT--------------KVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKL  163 (239)
T ss_dssp             ---CTTCCEEEEEEE-CCC-SCCC-CT--------------TCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEEC
T ss_pred             ---CCCCCEEeCCCC-CCc-cccc-cc--------------cccccccccEEECCCCcchhhcCcccccchhcceeEEEc
Confidence               667777777766 343 3442 11              1222222337777766 4333332  22355666 6666


Q ss_pred             eccEeeeecCCCCccCCCCCCcCCCCCCCCCeEEecCCCCCCCCCccEEEEcCCCCCCCccccCCCCccCCCC-CCcCeE
Q 048322          354 SNSSLDMIGCKGMLYDSQAGSSLPKPMTTTNVLEFGKLLEPGFQILETLVIGNSEQLKPWRQGRGLSMGFQRL-TSLQSL  432 (498)
Q Consensus       354 ~~~~l~~~~~~~l~~~~~~l~~lp~~l~~L~~L~i~~~~~~~lp~L~~L~l~~c~~L~~l~~l~~l~~~l~~l-~~L~~L  432 (498)
                      ++|               .+..+|...            .. .++|+.|+++++..++.+.     +..+..+ ++|++|
T Consensus       164 ~~n---------------~l~~i~~~~------------~~-~~~L~~L~L~~n~~l~~i~-----~~~~~~l~~~L~~L  210 (239)
T 2xwt_C          164 YNN---------------GFTSVQGYA------------FN-GTKLDAVYLNKNKYLTVID-----KDAFGGVYSGPSLL  210 (239)
T ss_dssp             CSC---------------CCCEECTTT------------TT-TCEEEEEECTTCTTCCEEC-----TTTTTTCSBCCSEE
T ss_pred             CCC---------------CCcccCHhh------------cC-CCCCCEEEcCCCCCcccCC-----HHHhhccccCCcEE
Confidence            554               222222211            11 1457788887765565431     4457778 899999


Q ss_pred             eeecCCCCCcCCCCCccccccceeeccCchh
Q 048322          433 KIWNCPNLTLFPEVGLPSSLLDLYVNNCPRL  463 (498)
Q Consensus       433 ~l~~c~~l~~lp~~~~~~sL~~L~i~~c~~l  463 (498)
                      ++++ +.++.+|.. .+++|+.|++.++..|
T Consensus       211 ~l~~-N~l~~l~~~-~~~~L~~L~l~~~~~l  239 (239)
T 2xwt_C          211 DVSQ-TSVTALPSK-GLEHLKELIARNTWTL  239 (239)
T ss_dssp             ECTT-CCCCCCCCT-TCTTCSEEECTTC---
T ss_pred             ECCC-CccccCChh-HhccCceeeccCccCC
Confidence            9988 477888875 4578999999888653

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.55  E-value=1.9e-16  Score=152.92  Aligned_cols=244  Identities=14%  Similarity=0.024  Sum_probs=173.2

Q ss_pred             HhHHHhhcccCCcccEEEEecCCCCCCcChhhHHHhhhcCCCCCCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCC
Q 048322          131 NAREAALCEKLNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCN  210 (498)
Q Consensus       131 ~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~  210 (498)
                      +....-....++|+.|+|+++.-..      .   ....+..+++|++|+++++.....+. +.  .+++|++|++++| 
T Consensus        24 ~~~~~~~~~~~~L~~L~L~~n~l~~------~---~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~--~l~~L~~L~Ls~n-   90 (317)
T 3o53_A           24 QALASLRQSAWNVKELDLSGNPLSQ------I---SAADLAPFTKLELLNLSSNVLYETLD-LE--SLSTLRTLDLNNN-   90 (317)
T ss_dssp             HHHHHHHTTGGGCSEEECTTSCCCC------C---CHHHHTTCTTCCEEECTTSCCEEEEE-ET--TCTTCCEEECCSS-
T ss_pred             hhHHHHhccCCCCCEEECcCCccCc------C---CHHHhhCCCcCCEEECCCCcCCcchh-hh--hcCCCCEEECcCC-
Confidence            3344444567799999998875211      1   12334566999999999998766655 44  5899999999996 


Q ss_pred             CCCCCCCCCCccccceeeccccccceecCccccCCCCCCCCCCCceeeccCCCccccccccccCCccccCCCccceeeec
Q 048322          211 NCVSLPSLGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVV  290 (498)
Q Consensus       211 ~~~~lp~i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~  290 (498)
                      .++.+|   ..++|++|+++++ .+..++..        .+++|++|+++++ .++...+...+     .+++|++|+++
T Consensus        91 ~l~~l~---~~~~L~~L~l~~n-~l~~~~~~--------~~~~L~~L~l~~N-~l~~~~~~~~~-----~l~~L~~L~Ls  152 (317)
T 3o53_A           91 YVQELL---VGPSIETLHAANN-NISRVSCS--------RGQGKKNIYLANN-KITMLRDLDEG-----CRSRVQYLDLK  152 (317)
T ss_dssp             EEEEEE---ECTTCCEEECCSS-CCSEEEEC--------CCSSCEEEECCSS-CCCSGGGBCTG-----GGSSEEEEECT
T ss_pred             cccccc---CCCCcCEEECCCC-ccCCcCcc--------ccCCCCEEECCCC-CCCCccchhhh-----ccCCCCEEECC
Confidence            455544   4489999999985 46666532        4789999999887 45554432222     28999999999


Q ss_pred             cCCCccccCCCCcchHHHHHHhcccccccC-CCCccccEEEecCCCcceecCCCCCCCccEEEEeccEeeeecCCCCccC
Q 048322          291 KCPKLSGKLPELLPSLEILVSKCEKLVVSL-SSYPRLCRLEVDECKELVCRTPIDSKLIKFMTISNSSLDMIGCKGMLYD  369 (498)
Q Consensus       291 ~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~  369 (498)
                      +| .+.+..|.                 .+ ..+++|++|++++|....++....+++|+.|++++|.+           
T Consensus       153 ~N-~l~~~~~~-----------------~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l-----------  203 (317)
T 3o53_A          153 LN-EIDTVNFA-----------------ELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKL-----------  203 (317)
T ss_dssp             TS-CCCEEEGG-----------------GGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCC-----------
T ss_pred             CC-CCCcccHH-----------------HHhhccCcCCEEECCCCcCcccccccccccCCEEECCCCcC-----------
Confidence            98 44322222                 22 24789999999999888777777799999999998733           


Q ss_pred             CCCCCcCCC---CCCCCCeEEecCC-------CCCCCCCccEEEEcCCCCCCCccccCCCCccCCCCCCcCeEeeecCCC
Q 048322          370 SQAGSSLPK---PMTTTNVLEFGKL-------LEPGFQILETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPN  439 (498)
Q Consensus       370 ~~~l~~lp~---~l~~L~~L~i~~~-------~~~~lp~L~~L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~~  439 (498)
                          ..+|.   .+++|+.|++++|       .+..+++|+.|++++++-...     .+|.++..+++|+.|++.+|+.
T Consensus       204 ----~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~-----~~~~~~~~~~~L~~l~l~~~~~  274 (317)
T 3o53_A          204 ----AFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCG-----TLRDFFSKNQRVQTVAKQTVKK  274 (317)
T ss_dssp             ----CEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHH-----HHHHHHHTCHHHHHHHHHHHHH
T ss_pred             ----CcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCc-----CHHHHHhccccceEEECCCchh
Confidence                33333   2378999999999       355677899999998653311     1267778889999999987766


Q ss_pred             CCcC
Q 048322          440 LTLF  443 (498)
Q Consensus       440 l~~l  443 (498)
                      ++..
T Consensus       275 l~~~  278 (317)
T 3o53_A          275 LTGQ  278 (317)
T ss_dssp             HHSS
T ss_pred             ccCC
Confidence            5544

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.54  E-value=4.2e-13  Score=127.24  Aligned_cols=206  Identities=17%  Similarity=0.271  Sum_probs=152.6

Q ss_pred             cEEeEeCCCCCCCCCCCCCccccceeeccccccceecCccccCCCCCCCCCCCceeeccCCCccccccccccCCccccCC
Q 048322          202 EFLELENCNNCVSLPSLGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFENLPEWWHWDTDIKGNVHVDIF  281 (498)
Q Consensus       202 ~~L~l~~c~~~~~lp~i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l  281 (498)
                      +.++.++ ..++.+|. +..++|++|+++++ .++.++...+.     .+++|++|+++++ .++.+.+.....     +
T Consensus        14 ~~~~c~~-~~l~~ip~-~~~~~l~~L~l~~n-~i~~~~~~~~~-----~~~~L~~L~l~~n-~l~~~~~~~~~~-----l   79 (285)
T 1ozn_A           14 VTTSCPQ-QGLQAVPV-GIPAASQRIFLHGN-RISHVPAASFR-----ACRNLTILWLHSN-VLARIDAAAFTG-----L   79 (285)
T ss_dssp             CEEECCS-SCCSSCCT-TCCTTCSEEECTTS-CCCEECTTTTT-----TCTTCCEEECCSS-CCCEECTTTTTT-----C
T ss_pred             eEEEcCc-CCcccCCc-CCCCCceEEEeeCC-cCCccCHHHcc-----cCCCCCEEECCCC-ccceeCHhhcCC-----c
Confidence            4666665 46777775 33579999999985 57888765443     5899999999887 455554332233     8


Q ss_pred             CccceeeeccCCCccccC-CCCcchHHHHHHhcccccccCCCCccccEEEecCCCcceecC--CCCCCCccEEEEeccEe
Q 048322          282 PRLQELSVVKCPKLSGKL-PELLPSLEILVSKCEKLVVSLSSYPRLCRLEVDECKELVCRT--PIDSKLIKFMTISNSSL  358 (498)
Q Consensus       282 ~~L~~L~l~~c~~l~~~l-p~~l~~L~~Li~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~l  358 (498)
                      ++|++|++++|..+. .+ |.                 .+..+++|++|++++|.....+.  ...+++|++|++++|.+
T Consensus        80 ~~L~~L~l~~n~~l~-~~~~~-----------------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  141 (285)
T 1ozn_A           80 ALLEQLDLSDNAQLR-SVDPA-----------------TFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL  141 (285)
T ss_dssp             TTCCEEECCSCTTCC-CCCTT-----------------TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             cCCCEEeCCCCCCcc-ccCHH-----------------HhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcc
Confidence            999999999986565 44 33                 56678999999999998766532  34589999999998733


Q ss_pred             eeecCCCCccCCCCCCcCC----CCCCCCCeEEecCC--------CCCCCCCccEEEEcCCCCCCCccccCCCCccCCCC
Q 048322          359 DMIGCKGMLYDSQAGSSLP----KPMTTTNVLEFGKL--------LEPGFQILETLVIGNSEQLKPWRQGRGLSMGFQRL  426 (498)
Q Consensus       359 ~~~~~~~l~~~~~~l~~lp----~~l~~L~~L~i~~~--------~~~~lp~L~~L~l~~c~~L~~l~~l~~l~~~l~~l  426 (498)
                                     ..++    ..+++|+.|++++|        .+..+++|+.|+++++. ++.+     .|..+..+
T Consensus       142 ---------------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~-----~~~~~~~l  200 (285)
T 1ozn_A          142 ---------------QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR-VAHV-----HPHAFRDL  200 (285)
T ss_dssp             ---------------CCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEE-----CTTTTTTC
T ss_pred             ---------------cccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCc-cccc-----CHhHccCc
Confidence                           3333    23488999999998        25667889999999964 4322     27788899


Q ss_pred             CCcCeEeeecCCCCCcCCCC--CccccccceeeccCc
Q 048322          427 TSLQSLKIWNCPNLTLFPEV--GLPSSLLDLYVNNCP  461 (498)
Q Consensus       427 ~~L~~L~l~~c~~l~~lp~~--~~~~sL~~L~i~~c~  461 (498)
                      ++|++|++++| .+..+|..  ...++|+.|+++++|
T Consensus       201 ~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~  236 (285)
T 1ozn_A          201 GRLMTLYLFAN-NLSALPTEALAPLRALQYLRLNDNP  236 (285)
T ss_dssp             TTCCEEECCSS-CCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred             ccccEeeCCCC-cCCcCCHHHcccCcccCEEeccCCC
Confidence            99999999996 67777643  345789999998875

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.52  E-value=4.7e-14  Score=144.18  Aligned_cols=224  Identities=14%  Similarity=0.126  Sum_probs=160.9

Q ss_pred             EeecCCCCCCccccC--CCCCCccEEeEeCCCCCCCCCC--CCCccccceeeccccccceecCccccCCCCCCCCCCCce
Q 048322          181 IRNYGGARFPLWIGD--PLFSKIEFLELENCNNCVSLPS--LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKI  256 (498)
Q Consensus       181 l~~~~~~~~p~~~~~--~~l~~L~~L~l~~c~~~~~lp~--i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~  256 (498)
                      ++......+|..+..  ..+++|++|+|++| .+..+|+  ++.+++|++|++++|. +..++. +      ..+++|++
T Consensus        14 ~~~~~~~~l~~~l~~l~~~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~-l------~~l~~L~~   84 (487)
T 3oja_A           14 IEKVTDSSLKQALASLRQSAWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNV-LYETLD-L------ESLSTLRT   84 (487)
T ss_dssp             EESCCTTTHHHHHHTTSTTGGGCCEEECCSS-CCCCCCGGGGTTCTTCCEEECTTSC-CEEEEE-C------TTCTTCCE
T ss_pred             cccCchhhhHHHHHHhcccCCCccEEEeeCC-cCCCCCHHHHhCCCCCCEEEeeCCC-CCCCcc-c------ccCCCCCE
Confidence            333344455655542  13458999999997 5566653  9999999999999964 555443 2      35999999


Q ss_pred             eeccCCCccccccccccCCccccCCCccceeeeccCCCccccCCCCcchHHHHHHhcccccccCCCCccccEEEecCCCc
Q 048322          257 LRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSYPRLCRLEVDECKE  336 (498)
Q Consensus       257 L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~L~l~~~~~  336 (498)
                      |+++++ .+..+.+          .++|++|++++| .+. .+|.                   ..+++|+.|++++|..
T Consensus        85 L~Ls~N-~l~~l~~----------~~~L~~L~L~~N-~l~-~~~~-------------------~~l~~L~~L~L~~N~l  132 (487)
T 3oja_A           85 LDLNNN-YVQELLV----------GPSIETLHAANN-NIS-RVSC-------------------SRGQGKKNIYLANNKI  132 (487)
T ss_dssp             EECCSS-EEEEEEE----------CTTCCEEECCSS-CCC-CEEE-------------------CCCSSCEEEECCSSCC
T ss_pred             EEecCC-cCCCCCC----------CCCcCEEECcCC-cCC-CCCc-------------------cccCCCCEEECCCCCC
Confidence            999987 4444432          589999999998 443 2221                   2367899999999987


Q ss_pred             ceec--CCCCCCCccEEEEeccEeeeecCCCCccCCCCCCcCCCCCCCCCeEEecCC------CCCCCCCccEEEEcCCC
Q 048322          337 LVCR--TPIDSKLIKFMTISNSSLDMIGCKGMLYDSQAGSSLPKPMTTTNVLEFGKL------LEPGFQILETLVIGNSE  408 (498)
Q Consensus       337 ~~~~--~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~l~~lp~~l~~L~~L~i~~~------~~~~lp~L~~L~l~~c~  408 (498)
                      ....  ....+++|+.|++++|.+......          .+...+++|+.|++++|      ....+++|+.|+++++ 
T Consensus       133 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~----------~l~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N-  201 (487)
T 3oja_A          133 TMLRDLDEGCRSRVQYLDLKLNEIDTVNFA----------ELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSN-  201 (487)
T ss_dssp             CSGGGBCGGGGSSEEEEECTTSCCCEEEGG----------GGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSS-
T ss_pred             CCCCchhhcCCCCCCEEECCCCCCCCcChH----------HHhhhCCcccEEecCCCccccccccccCCCCCEEECCCC-
Confidence            6643  234489999999999855432211          12224589999999999      3456888999999985 


Q ss_pred             CCCCccccCCCCccCCCCCCcCeEeeecCCCCCcCCCC-CccccccceeeccCchh
Q 048322          409 QLKPWRQGRGLSMGFQRLTSLQSLKIWNCPNLTLFPEV-GLPSSLLDLYVNNCPRL  463 (498)
Q Consensus       409 ~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~~l~~lp~~-~~~~sL~~L~i~~c~~l  463 (498)
                      .++.+      |..+..+++|+.|++++| .+..+|.. ..+++|+.|++++|+-.
T Consensus       202 ~l~~~------~~~~~~l~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          202 KLAFM------GPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             CCCEE------CGGGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCCBC
T ss_pred             CCCCC------CHhHcCCCCccEEEecCC-cCcccchhhccCCCCCEEEcCCCCCc
Confidence            45443      777889999999999995 67788875 45689999999987643

>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}

Probab=99.51  E-value=1.6e-15  Score=121.44  Aligned_cols=46  Identities=33%  Similarity=0.483  Sum_probs=42.6

Q ss_pred             CHHHHHHHHHhc--ccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q 048322            1 MIQAVLSDAEEK--RLTDEAVKMWLDELQDLAYDAEDILDGFGTQALE   46 (498)
Q Consensus         1 ~i~a~L~da~~~--~~~~~~~~~Wl~~lrd~~yd~eDvlD~~~~~~~~   46 (498)
                      +|+|||.||+++  +..|++++.|++||||+||||||+||+|.|++.+
T Consensus        37 ~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD~f~~~~~~   84 (115)
T 3qfl_A           37 SMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVDKFLVQVDG   84 (115)
T ss_dssp             HHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            589999999998  5689999999999999999999999999999854

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.51  E-value=1.1e-12  Score=123.31  Aligned_cols=196  Identities=20%  Similarity=0.222  Sum_probs=116.9

Q ss_pred             CCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCC--CCCccccceeeccccccceecCccccCCCCCCCCC
Q 048322          175 CIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPS--LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFP  252 (498)
Q Consensus       175 ~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~--i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~  252 (498)
                      +.+.+++++++...+|..+.    ++|++|++++| .+..+|+  ++.+++|++|+++++ .++.++...+.     .++
T Consensus        17 ~~~~l~~~~~~l~~ip~~~~----~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~-----~l~   85 (270)
T 2o6q_A           17 NKNSVDCSSKKLTAIPSNIP----ADTKKLDLQSN-KLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFK-----ELK   85 (270)
T ss_dssp             TTTEEECTTSCCSSCCSCCC----TTCSEEECCSS-CCSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTS-----SCT
T ss_pred             CCCEEEccCCCCCccCCCCC----CCCCEEECcCC-CCCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhhc-----CCC
Confidence            56778888877777776543    56888888885 4666664  778888888888874 46666665443     477


Q ss_pred             CCceeeccCCCccccccccccCCccccCCCccceeeeccCCCccccCCCCcchHHHHHHhcccccccCCCCccccEEEec
Q 048322          253 SLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSYPRLCRLEVD  332 (498)
Q Consensus       253 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~L~l~  332 (498)
                      +|++|+++++ .++.+.+.....     +++|++|+++++ .++ .+|..                .+..+++|++|+++
T Consensus        86 ~L~~L~l~~n-~l~~~~~~~~~~-----l~~L~~L~l~~n-~l~-~~~~~----------------~~~~l~~L~~L~Ls  141 (270)
T 2o6q_A           86 NLETLWVTDN-KLQALPIGVFDQ-----LVNLAELRLDRN-QLK-SLPPR----------------VFDSLTKLTYLSLG  141 (270)
T ss_dssp             TCCEEECCSS-CCCCCCTTTTTT-----CSSCCEEECCSS-CCC-CCCTT----------------TTTTCTTCCEEECC
T ss_pred             CCCEEECCCC-cCCcCCHhHccc-----ccCCCEEECCCC-ccC-eeCHH----------------HhCcCcCCCEEECC
Confidence            7788877765 344433222222     677788877776 343 33321                34456777777777


Q ss_pred             CCCcceecC--CCCCCCccEEEEeccEeeeecCCCCccCCCCCCcCCCCCCCCCeEEecCCCCCCCCCccEEEEcCCCCC
Q 048322          333 ECKELVCRT--PIDSKLIKFMTISNSSLDMIGCKGMLYDSQAGSSLPKPMTTTNVLEFGKLLEPGFQILETLVIGNSEQL  410 (498)
Q Consensus       333 ~~~~~~~~~--~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~l~~lp~~l~~L~~L~i~~~~~~~lp~L~~L~l~~c~~L  410 (498)
                      +|....++.  ...+++|+.|++++|               .+..+|..            .+..+++|+.|+++++ .+
T Consensus       142 ~n~l~~~~~~~~~~l~~L~~L~L~~n---------------~l~~~~~~------------~~~~l~~L~~L~L~~N-~l  193 (270)
T 2o6q_A          142 YNELQSLPKGVFDKLTSLKELRLYNN---------------QLKRVPEG------------AFDKLTELKTLKLDNN-QL  193 (270)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSS---------------CCSCCCTT------------TTTTCTTCCEEECCSS-CC
T ss_pred             CCcCCccCHhHccCCcccceeEecCC---------------cCcEeChh------------HhccCCCcCEEECCCC-cC
Confidence            765544332  223556666666554               22222211            1234555666666664 34


Q ss_pred             CCccccCCCCccCCCCCCcCeEeeecCC
Q 048322          411 KPWRQGRGLSMGFQRLTSLQSLKIWNCP  438 (498)
Q Consensus       411 ~~l~~l~~l~~~l~~l~~L~~L~l~~c~  438 (498)
                      +.+.     +..+..+++|+.|++++++
T Consensus       194 ~~~~-----~~~~~~l~~L~~L~l~~N~  216 (270)
T 2o6q_A          194 KRVP-----EGAFDSLEKLKMLQLQENP  216 (270)
T ss_dssp             SCCC-----TTTTTTCTTCCEEECCSSC
T ss_pred             CcCC-----HHHhccccCCCEEEecCCC
Confidence            3321     2346667778888887765

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.50  E-value=7.5e-13  Score=129.41  Aligned_cols=211  Identities=13%  Similarity=0.128  Sum_probs=117.3

Q ss_pred             CCCceEEEeecCCCCCCcc-ccCCCCCCccEEeEeCCCCCCCCCC--CCCccccceeeccccccceecCccccCCCCCCC
Q 048322          174 KCIKKVAIRNYGGARFPLW-IGDPLFSKIEFLELENCNNCVSLPS--LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMP  250 (498)
Q Consensus       174 ~~L~~L~l~~~~~~~~p~~-~~~~~l~~L~~L~l~~c~~~~~lp~--i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~  250 (498)
                      +++++|+++++....+|.. +.  .+++|++|+|++|...+.+|.  +..+++|+++.+.+++.+..++.+.+.     .
T Consensus        30 ~~l~~L~Ls~N~i~~i~~~~f~--~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~-----~  102 (350)
T 4ay9_X           30 RNAIELRFVLTKLRVIQKGAFS--GFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQ-----N  102 (350)
T ss_dssp             TTCSEEEEESCCCSEECTTSST--TCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBC-----C
T ss_pred             CCCCEEEccCCcCCCcCHHHHc--CCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhh-----h
Confidence            5677777777766666653 33  466777777777655555554  566666666555555666666655443     4


Q ss_pred             CCCCceeeccCCCccccccccccCCccccCCCccceeeeccCCCccccCCCCcchHHHHHHhcccccccCCCC-ccccEE
Q 048322          251 FPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSY-PRLCRL  329 (498)
Q Consensus       251 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~~l-~~L~~L  329 (498)
                      +++|++|+++++ .+........     ....++..|++.++..+. .+|..                .+..+ ..++.|
T Consensus       103 l~~L~~L~l~~n-~l~~~~~~~~-----~~~~~l~~l~l~~~~~i~-~l~~~----------------~f~~~~~~l~~L  159 (350)
T 4ay9_X          103 LPNLQYLLISNT-GIKHLPDVHK-----IHSLQKVLLDIQDNINIH-TIERN----------------SFVGLSFESVIL  159 (350)
T ss_dssp             CTTCCEEEEEEE-CCSSCCCCTT-----CCBSSCEEEEEESCTTCC-EECTT----------------SSTTSBSSCEEE
T ss_pred             cccccccccccc-ccccCCchhh-----cccchhhhhhhccccccc-ccccc----------------chhhcchhhhhh
Confidence            666777776654 2333321111     113445566666555553 33321                22332 457778


Q ss_pred             EecCCCcceecC-CCCCCCccEEEEeccEeeeecCCCCccCCCCCCcCCCC----CCCCCeEEecCC-----CCCCCCCc
Q 048322          330 EVDECKELVCRT-PIDSKLIKFMTISNSSLDMIGCKGMLYDSQAGSSLPKP----MTTTNVLEFGKL-----LEPGFQIL  399 (498)
Q Consensus       330 ~l~~~~~~~~~~-~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~l~~lp~~----l~~L~~L~i~~~-----~~~~lp~L  399 (498)
                      ++++|....++. .+...+|+.|.+.+              ++.++.+|..    +++|+.|++++|     +...+..|
T Consensus       160 ~L~~N~i~~i~~~~f~~~~L~~l~l~~--------------~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L  225 (350)
T 4ay9_X          160 WLNKNGIQEIHNSAFNGTQLDELNLSD--------------NNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENL  225 (350)
T ss_dssp             ECCSSCCCEECTTSSTTEEEEEEECTT--------------CTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTC
T ss_pred             ccccccccCCChhhccccchhHHhhcc--------------CCcccCCCHHHhccCcccchhhcCCCCcCccChhhhccc
Confidence            888777666543 23355677777643              3455666542    256666777666     22334446


Q ss_pred             cEEEEcCCCCCCCccccCCCCccCCCCCCcCeEeee
Q 048322          400 ETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIW  435 (498)
Q Consensus       400 ~~L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~  435 (498)
                      +.|.+.++.+++.+      | .+..+++|+.+++.
T Consensus       226 ~~L~~l~~~~l~~l------P-~l~~l~~L~~l~l~  254 (350)
T 4ay9_X          226 KKLRARSTYNLKKL------P-TLEKLVALMEASLT  254 (350)
T ss_dssp             CEEECTTCTTCCCC------C-CTTTCCSCCEEECS
T ss_pred             hHhhhccCCCcCcC------C-CchhCcChhhCcCC
Confidence            66666666555543      4 24556666666654

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.50  E-value=2.6e-13  Score=125.12  Aligned_cols=199  Identities=13%  Similarity=0.103  Sum_probs=137.6

Q ss_pred             CCCceEEEeecCCCCCCc-cccCCCCCCccEEeEeCCCCCCCCCC--CCCccccceeeccccccceecCccccCCCCCCC
Q 048322          174 KCIKKVAIRNYGGARFPL-WIGDPLFSKIEFLELENCNNCVSLPS--LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMP  250 (498)
Q Consensus       174 ~~L~~L~l~~~~~~~~p~-~~~~~~l~~L~~L~l~~c~~~~~lp~--i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~  250 (498)
                      .+|++|+++++....+|. .+.  .+++|++|++++|..++.+|+  ++.+++|++|++++|+.++.++...+.     .
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~--~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~-----~  103 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFS--NLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALK-----E  103 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTT--TCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEE-----C
T ss_pred             CcccEEEEeCCcceEECHHHcc--CCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhC-----C
Confidence            589999999998887776 444  589999999999765788875  788999999999987788888876554     4


Q ss_pred             CCCCceeeccCCCccccccccccCCccccCCCccc---eeeeccCCCccccCCCCcchHHHHHHhcccccccCCCCcccc
Q 048322          251 FPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQ---ELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSYPRLC  327 (498)
Q Consensus       251 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~---~L~l~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~  327 (498)
                      +++|++|+++++ .++.+..       +..+++|+   .|++++|+.++ .+|..                .+..+++|+
T Consensus       104 l~~L~~L~l~~n-~l~~lp~-------~~~l~~L~~L~~L~l~~N~~l~-~i~~~----------------~~~~l~~L~  158 (239)
T 2xwt_C          104 LPLLKFLGIFNT-GLKMFPD-------LTKVYSTDIFFILEITDNPYMT-SIPVN----------------AFQGLCNET  158 (239)
T ss_dssp             CTTCCEEEEEEE-CCCSCCC-------CTTCCBCCSEEEEEEESCTTCC-EECTT----------------TTTTTBSSE
T ss_pred             CCCCCEEeCCCC-CCccccc-------cccccccccccEEECCCCcchh-hcCcc----------------cccchhcce
Confidence            889999999876 3444331       12266776   99999986675 55531                466688999


Q ss_pred             -EEEecCCCcceecCC-CCCCCccEEEEeccEeeeecCCCCccCCCCCCcCCCCCCCCCeEEecCCCCCCC-CCccEEEE
Q 048322          328 -RLEVDECKELVCRTP-IDSKLIKFMTISNSSLDMIGCKGMLYDSQAGSSLPKPMTTTNVLEFGKLLEPGF-QILETLVI  404 (498)
Q Consensus       328 -~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~l~~lp~~l~~L~~L~i~~~~~~~l-p~L~~L~l  404 (498)
                       +|++++|....++.. ...++|+.|++++|              ..++.+|..            .+.++ ++|+.|++
T Consensus       159 ~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n--------------~~l~~i~~~------------~~~~l~~~L~~L~l  212 (239)
T 2xwt_C          159 LTLKLYNNGFTSVQGYAFNGTKLDAVYLNKN--------------KYLTVIDKD------------AFGGVYSGPSLLDV  212 (239)
T ss_dssp             EEEECCSCCCCEECTTTTTTCEEEEEECTTC--------------TTCCEECTT------------TTTTCSBCCSEEEC
T ss_pred             eEEEcCCCCCcccCHhhcCCCCCCEEEcCCC--------------CCcccCCHH------------HhhccccCCcEEEC
Confidence             999999877665542 23478999998765              113333221            12344 56667777


Q ss_pred             cCCCCCCCccccCCCCccCCCCCCcCeEeeecCCC
Q 048322          405 GNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPN  439 (498)
Q Consensus       405 ~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~~  439 (498)
                      ++ +.++.+      |..  .+++|+.|.+.++..
T Consensus       213 ~~-N~l~~l------~~~--~~~~L~~L~l~~~~~  238 (239)
T 2xwt_C          213 SQ-TSVTAL------PSK--GLEHLKELIARNTWT  238 (239)
T ss_dssp             TT-CCCCCC------CCT--TCTTCSEEECTTC--
T ss_pred             CC-CccccC------Chh--HhccCceeeccCccC
Confidence            66 334332      443  567788888777654

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.48  E-value=1.2e-12  Score=128.00  Aligned_cols=226  Identities=14%  Similarity=0.168  Sum_probs=159.8

Q ss_pred             ceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCC--CCCccccceeeccccccceecCccccCCCCCCCCCCC
Q 048322          177 KKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPS--LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSL  254 (498)
Q Consensus       177 ~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~--i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L  254 (498)
                      +.++.++.+.+.+|..+    .+++++|+|++| .++.+|+  ++.+++|++|+|+++.-++.++...+.     .+++|
T Consensus        12 ~~v~C~~~~Lt~iP~~l----~~~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~-----~L~~l   81 (350)
T 4ay9_X           12 RVFLCQESKVTEIPSDL----PRNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFS-----NLPKL   81 (350)
T ss_dssp             TEEEEESTTCCSCCTTC----CTTCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBC-----SCTTC
T ss_pred             CEEEecCCCCCccCcCc----CCCCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhh-----cchhh
Confidence            56778888888888765    368999999995 6888886  889999999999997766778776554     47787


Q ss_pred             ceeeccCCCccccccccccCCccccCCCccceeeeccCCCccccCCCCcchHHHHHHhcccccccCCCCccccEEEecCC
Q 048322          255 KILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSYPRLCRLEVDEC  334 (498)
Q Consensus       255 ~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~L~l~~~  334 (498)
                      .++.+.++..+..+.++....     +++|++|+++++ .+. .+|..                .+....++..|++.++
T Consensus        82 ~~~l~~~~N~l~~l~~~~f~~-----l~~L~~L~l~~n-~l~-~~~~~----------------~~~~~~~l~~l~l~~~  138 (350)
T 4ay9_X           82 HEIRIEKANNLLYINPEAFQN-----LPNLQYLLISNT-GIK-HLPDV----------------HKIHSLQKVLLDIQDN  138 (350)
T ss_dssp             CEEEEEEETTCCEECTTSBCC-----CTTCCEEEEEEE-CCS-SCCCC----------------TTCCBSSCEEEEEESC
T ss_pred             hhhhcccCCcccccCchhhhh-----cccccccccccc-ccc-cCCch----------------hhcccchhhhhhhccc
Confidence            776666555677665444333     899999999988 454 44431                2233556778888765


Q ss_pred             Ccce-ecCC--CC-CCCccEEEEeccEeeeecCCCCccCCCCCCcCCCCC---CCCCeEEecCC---------CCCCCCC
Q 048322          335 KELV-CRTP--ID-SKLIKFMTISNSSLDMIGCKGMLYDSQAGSSLPKPM---TTTNVLEFGKL---------LEPGFQI  398 (498)
Q Consensus       335 ~~~~-~~~~--~~-~~~L~~L~l~~~~l~~~~~~~l~~~~~~l~~lp~~l---~~L~~L~i~~~---------~~~~lp~  398 (498)
                      ..+. ++..  .. ...++.|++++|               .++.+|...   .+|+.|.+.++         .+.++++
T Consensus       139 ~~i~~l~~~~f~~~~~~l~~L~L~~N---------------~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~  203 (350)
T 4ay9_X          139 INIHTIERNSFVGLSFESVILWLNKN---------------GIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASG  203 (350)
T ss_dssp             TTCCEECTTSSTTSBSSCEEEECCSS---------------CCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEEC
T ss_pred             cccccccccchhhcchhhhhhccccc---------------cccCCChhhccccchhHHhhccCCcccCCCHHHhccCcc
Confidence            5443 3321  22 346888998876               444555433   56888888764         2355677


Q ss_pred             ccEEEEcCCCCCCCccccCCCCccCCCCCCcCeEeeecCCCCCcCCCCCccccccceeecc
Q 048322          399 LETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPNLTLFPEVGLPSSLLDLYVNN  459 (498)
Q Consensus       399 L~~L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~sL~~L~i~~  459 (498)
                      |+.|+++++ .++.+      |.+  .+.+|+.|.+.+|..++.+|....+++|+.+++.+
T Consensus       204 L~~LdLs~N-~l~~l------p~~--~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~  255 (350)
T 4ay9_X          204 PVILDISRT-RIHSL------PSY--GLENLKKLRARSTYNLKKLPTLEKLVALMEASLTY  255 (350)
T ss_dssp             CSEEECTTS-CCCCC------CSS--SCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECSC
T ss_pred             cchhhcCCC-CcCcc------Chh--hhccchHhhhccCCCcCcCCCchhCcChhhCcCCC
Confidence            999999885 56543      653  46788888888999999999765568888888854

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.48  E-value=2.4e-13  Score=128.05  Aligned_cols=149  Identities=16%  Similarity=0.201  Sum_probs=74.1

Q ss_pred             CCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCCCCCccccceeeccccccceecCccccCCCCCCCCCC
Q 048322          174 KCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPSLGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPS  253 (498)
Q Consensus       174 ~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~  253 (498)
                      .+|+.|.+.++....++. +.  .+++|++|++++| .+..++.++.+++|++|++++| .++.++...++     .+++
T Consensus        41 ~~L~~L~l~~~~i~~~~~-l~--~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~L~~n-~l~~~~~~~~~-----~l~~  110 (272)
T 3rfs_A           41 NSIDQIIANNSDIKSVQG-IQ--YLPNVRYLALGGN-KLHDISALKELTNLTYLILTGN-QLQSLPNGVFD-----KLTN  110 (272)
T ss_dssp             TTCCEEECTTSCCCCCTT-GG--GCTTCCEEECTTS-CCCCCGGGTTCTTCCEEECTTS-CCCCCCTTTTT-----TCTT
T ss_pred             cceeeeeeCCCCcccccc-cc--cCCCCcEEECCCC-CCCCchhhcCCCCCCEEECCCC-ccCccChhHhc-----CCcC
Confidence            455555555555444433 22  3556666666654 3444444556666666666554 34444443322     3555


Q ss_pred             CceeeccCCCccccccccccCCccccCCCccceeeeccCCCccccCCCCcchHHHHHHhcccccccCCCCccccEEEecC
Q 048322          254 LKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSYPRLCRLEVDE  333 (498)
Q Consensus       254 L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~L~l~~  333 (498)
                      |++|+++++ .++.+.+...+.     +++|++|++++| .++ .+|..                .+..+++|++|++++
T Consensus       111 L~~L~L~~n-~l~~~~~~~~~~-----l~~L~~L~L~~n-~l~-~~~~~----------------~~~~l~~L~~L~l~~  166 (272)
T 3rfs_A          111 LKELVLVEN-QLQSLPDGVFDK-----LTNLTYLNLAHN-QLQ-SLPKG----------------VFDKLTNLTELDLSY  166 (272)
T ss_dssp             CCEEECTTS-CCCCCCTTTTTT-----CTTCCEEECCSS-CCC-CCCTT----------------TTTTCTTCCEEECCS
T ss_pred             CCEEECCCC-cCCccCHHHhcc-----CCCCCEEECCCC-ccC-ccCHH----------------HhccCccCCEEECCC
Confidence            666665554 233332221112     566666666665 343 33320                234456666666666


Q ss_pred             CCcceecC--CCCCCCccEEEEecc
Q 048322          334 CKELVCRT--PIDSKLIKFMTISNS  356 (498)
Q Consensus       334 ~~~~~~~~--~~~~~~L~~L~l~~~  356 (498)
                      |....++.  ...+++|+.|++++|
T Consensus       167 n~l~~~~~~~~~~l~~L~~L~L~~N  191 (272)
T 3rfs_A          167 NQLQSLPEGVFDKLTQLKDLRLYQN  191 (272)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCcCccCHHHhcCCccCCEEECCCC
Confidence            65444332  223556666666554

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.46  E-value=1.4e-14  Score=139.36  Aligned_cols=206  Identities=19%  Similarity=0.199  Sum_probs=106.4

Q ss_pred             CCCccEEeEeCCCCCCCCCC-C--CCccccceeeccccccceecCccccCCCCCCCCCCCceeeccCCCccccccccccC
Q 048322          198 FSKIEFLELENCNNCVSLPS-L--GLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFENLPEWWHWDTDIKG  274 (498)
Q Consensus       198 l~~L~~L~l~~c~~~~~lp~-i--~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~  274 (498)
                      +++|++|++++|.....+|. +  +.+++|++|+++++ .+..+|..+..- ....+++|++|+++++ .+....+...+
T Consensus        94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~l-~~~~~~~L~~L~L~~N-~l~~~~~~~~~  170 (312)
T 1wwl_A           94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNV-SWATRDAWLAEL-QQWLKPGLKVLSIAQA-HSLNFSCEQVR  170 (312)
T ss_dssp             TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESC-BCSSSSSHHHHH-HTTCCTTCCEEEEESC-SCCCCCTTTCC
T ss_pred             cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCC-CCcchhHHHHHH-HHhhcCCCcEEEeeCC-CCccchHHHhc
Confidence            67888888888754446665 4  77888888888874 355554322210 0001267777777665 33333322222


Q ss_pred             CccccCCCccceeeeccCCCccccCCCCcchHHHHHHhcccccccCCCCccccEEEecCCCcceecCC-----CCCCCcc
Q 048322          275 NVHVDIFPRLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSYPRLCRLEVDECKELVCRTP-----IDSKLIK  349 (498)
Q Consensus       275 ~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~-----~~~~~L~  349 (498)
                      .     +++|++|++++|.. .+.++        ++.     ...+..+++|++|++++|....++..     ..+++|+
T Consensus       171 ~-----l~~L~~L~Ls~N~l-~~~~~--------~~~-----~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~  231 (312)
T 1wwl_A          171 V-----FPALSTLDLSDNPE-LGERG--------LIS-----ALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQ  231 (312)
T ss_dssp             C-----CSSCCEEECCSCTT-CHHHH--------HHH-----HSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCS
T ss_pred             c-----CCCCCEEECCCCCc-CcchH--------HHH-----HHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCC
Confidence            2     66777777766632 11100        000     00123456677777776654422111     1245666


Q ss_pred             EEEEeccEeeeecCCCCccCCCCCCcCCCCCCCCCeEEecCCCCCCCCCccEEEEcCCCCCCCccccCCCCccCCCCCCc
Q 048322          350 FMTISNSSLDMIGCKGMLYDSQAGSSLPKPMTTTNVLEFGKLLEPGFQILETLVIGNSEQLKPWRQGRGLSMGFQRLTSL  429 (498)
Q Consensus       350 ~L~l~~~~l~~~~~~~l~~~~~~l~~lp~~l~~L~~L~i~~~~~~~lp~L~~L~l~~c~~L~~l~~l~~l~~~l~~l~~L  429 (498)
                      .|++++|.+....              |..            ....+++|+.|+++++. ++.      +|.++.  ++|
T Consensus       232 ~L~Ls~N~l~~~~--------------~~~------------~~~~l~~L~~L~Ls~N~-l~~------ip~~~~--~~L  276 (312)
T 1wwl_A          232 GLDLSHNSLRDAA--------------GAP------------SCDWPSQLNSLNLSFTG-LKQ------VPKGLP--AKL  276 (312)
T ss_dssp             EEECTTSCCCSSC--------------CCS------------CCCCCTTCCEEECTTSC-CSS------CCSSCC--SEE
T ss_pred             EEECCCCcCCccc--------------chh------------hhhhcCCCCEEECCCCc-cCh------hhhhcc--CCc
Confidence            6666554221100              000            01223456666666632 332      255554  677


Q ss_pred             CeEeeecCCCCCcCCCCCccccccceeeccCc
Q 048322          430 QSLKIWNCPNLTLFPEVGLPSSLLDLYVNNCP  461 (498)
Q Consensus       430 ~~L~l~~c~~l~~lp~~~~~~sL~~L~i~~c~  461 (498)
                      ++|+++++ .++.+|.....++|++|++++++
T Consensus       277 ~~L~Ls~N-~l~~~p~~~~l~~L~~L~L~~N~  307 (312)
T 1wwl_A          277 SVLDLSYN-RLDRNPSPDELPQVGNLSLKGNP  307 (312)
T ss_dssp             EEEECCSS-CCCSCCCTTTSCEEEEEECTTCT
T ss_pred             eEEECCCC-CCCCChhHhhCCCCCEEeccCCC
Confidence            77777774 56666654444677777777654

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.45  E-value=1.4e-12  Score=137.88  Aligned_cols=127  Identities=17%  Similarity=0.130  Sum_probs=95.5

Q ss_pred             CCcccEEEEecCCCCCCcChhhHHHh-hhcCCCCCCCceEEEeecCCCCCCcc-ccCCCCCCccEEeEeCCCCCCCCCC-
Q 048322          141 LNLHALTLEWGSQFDNSRDVAVEEHV-LDILQPHKCIKKVAIRNYGGARFPLW-IGDPLFSKIEFLELENCNNCVSLPS-  217 (498)
Q Consensus       141 ~~L~~L~L~~~~~~~~~~~~~~~~~~-l~~l~~~~~L~~L~l~~~~~~~~p~~-~~~~~l~~L~~L~l~~c~~~~~lp~-  217 (498)
                      .++++|+|+++.-      .    .+ ...+..+++|++|++++|....+|.. +.  .+++|++|+|++| .++.+|+ 
T Consensus        52 ~~~~~LdLs~N~i------~----~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~--~L~~L~~L~Ls~N-~l~~l~~~  118 (635)
T 4g8a_A           52 FSTKNLDLSFNPL------R----HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ--SLSHLSTLILTGN-PIQSLALG  118 (635)
T ss_dssp             TTCCEEECTTSCC------C----EECTTTTTTCTTCCEEECTTCCCCEECTTTTT--TCTTCCEEECTTC-CCCEECGG
T ss_pred             cCCCEEEeeCCCC------C----CCCHHHHhCCCCCCEEECCCCcCCCcChhHhc--CCCCCCEEEccCC-cCCCCCHH
Confidence            4789999988751      1    11 13456679999999999998887654 55  5899999999996 5788885 


Q ss_pred             -CCCccccceeeccccccceecCccccCCCCCCCCCCCceeeccCCCcccccc-ccccCCccccCCCccceeeeccC
Q 048322          218 -LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFENLPEWWHWD-TDIKGNVHVDIFPRLQELSVVKC  292 (498)
Q Consensus       218 -i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~~~~~~l~~L~~L~l~~c  292 (498)
                       ++.+++|++|+++++ .++.++...++     .+++|++|+++++ .+.... +...+     .+++|++|++++|
T Consensus       119 ~f~~L~~L~~L~Ls~N-~l~~l~~~~~~-----~L~~L~~L~Ls~N-~l~~~~~~~~~~-----~l~~L~~L~L~~N  183 (635)
T 4g8a_A          119 AFSGLSSLQKLVAVET-NLASLENFPIG-----HLKTLKELNVAHN-LIQSFKLPEYFS-----NLTNLEHLDLSSN  183 (635)
T ss_dssp             GGTTCTTCCEEECTTS-CCCCSTTCCCT-----TCTTCCEEECCSS-CCCCCCCCGGGG-----GCTTCCEEECCSS
T ss_pred             HhcCCCCCCEEECCCC-cCCCCChhhhh-----cCcccCeeccccC-ccccCCCchhhc-----cchhhhhhcccCc
Confidence             899999999999996 57888765444     5899999999876 333332 22222     2888999999877

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.42  E-value=8.2e-13  Score=126.69  Aligned_cols=58  Identities=17%  Similarity=0.179  Sum_probs=30.5

Q ss_pred             CCCCCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCCCCCccccceeecccc
Q 048322          171 QPHKCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPSLGLLSSLKHLAVKGL  232 (498)
Q Consensus       171 ~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~i~~l~~L~~L~l~~~  232 (498)
                      ..+++|++|+++++....+|. +.  .+++|++|++++| .+..+|.++.+++|++|++++|
T Consensus        60 ~~l~~L~~L~L~~n~i~~~~~-~~--~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~l~~n  117 (308)
T 1h6u_A           60 QYLNNLIGLELKDNQITDLAP-LK--NLTKITELELSGN-PLKNVSAIAGLQSIKTLDLTST  117 (308)
T ss_dssp             GGCTTCCEEECCSSCCCCCGG-GT--TCCSCCEEECCSC-CCSCCGGGTTCTTCCEEECTTS
T ss_pred             hccCCCCEEEccCCcCCCChh-Hc--cCCCCCEEEccCC-cCCCchhhcCCCCCCEEECCCC
Confidence            334555555555555555544 33  3555555555554 2444444555555555555553

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.42  E-value=3.9e-12  Score=120.77  Aligned_cols=195  Identities=17%  Similarity=0.181  Sum_probs=104.7

Q ss_pred             CCCCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCC--CCCccccceeeccccccceecCccccCCCCCC
Q 048322          172 PHKCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPS--LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSM  249 (498)
Q Consensus       172 ~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~--i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~  249 (498)
                      .+++++.+++++++...+|..+.    ++++.|++++| .+..+++  +..+++|++|+++++ .++.++..       .
T Consensus         8 ~l~~l~~l~~~~~~l~~ip~~~~----~~l~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-------~   74 (290)
T 1p9a_G            8 KVASHLEVNCDKRNLTALPPDLP----KDTTILHLSEN-LLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVD-------G   74 (290)
T ss_dssp             CSTTCCEEECTTSCCSSCCSCCC----TTCCEEECTTS-CCSEEEGGGGTTCTTCCEEECTTS-CCCEEECC-------S
T ss_pred             ccCCccEEECCCCCCCcCCCCCC----CCCCEEEcCCC-cCCccCHHHhhcCCCCCEEECCCC-ccCcccCC-------C
Confidence            34667777777777777765442    56777777775 3444432  667777777777764 35555432       2


Q ss_pred             CCCCCceeeccCCCccccccccccCCccccCCCccceeeeccCCCccccCCCCcchHHHHHHhcccccccCCCCccccEE
Q 048322          250 PFPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSYPRLCRL  329 (498)
Q Consensus       250 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~L  329 (498)
                      .+++|+.|+++++ .++.+... .     ..+++|++|+++++ .++ .+|..                .+..+++|++|
T Consensus        75 ~l~~L~~L~Ls~N-~l~~l~~~-~-----~~l~~L~~L~l~~N-~l~-~l~~~----------------~~~~l~~L~~L  129 (290)
T 1p9a_G           75 TLPVLGTLDLSHN-QLQSLPLL-G-----QTLPALTVLDVSFN-RLT-SLPLG----------------ALRGLGELQEL  129 (290)
T ss_dssp             CCTTCCEEECCSS-CCSSCCCC-T-----TTCTTCCEEECCSS-CCC-CCCSS----------------TTTTCTTCCEE
T ss_pred             CCCcCCEEECCCC-cCCcCchh-h-----ccCCCCCEEECCCC-cCc-ccCHH----------------HHcCCCCCCEE
Confidence            3666666666654 33332211 1     12666666666665 343 33320                34445666666


Q ss_pred             EecCCCcceecCC--CCCCCccEEEEeccEeeeecCCCCccCCCCCCcCCCCCCCCCeEEecCCCCCCCCCccEEEEcCC
Q 048322          330 EVDECKELVCRTP--IDSKLIKFMTISNSSLDMIGCKGMLYDSQAGSSLPKPMTTTNVLEFGKLLEPGFQILETLVIGNS  407 (498)
Q Consensus       330 ~l~~~~~~~~~~~--~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~l~~lp~~l~~L~~L~i~~~~~~~lp~L~~L~l~~c  407 (498)
                      ++++|....++..  ..+++|+.|++++|               .++.+|..            .+..+++|+.|+++++
T Consensus       130 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N---------------~l~~l~~~------------~~~~l~~L~~L~L~~N  182 (290)
T 1p9a_G          130 YLKGNELKTLPPGLLTPTPKLEKLSLANN---------------NLTELPAG------------LLNGLENLDTLLLQEN  182 (290)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECTTS---------------CCSCCCTT------------TTTTCTTCCEEECCSS
T ss_pred             ECCCCCCCccChhhcccccCCCEEECCCC---------------cCCccCHH------------HhcCcCCCCEEECCCC
Confidence            6666654443321  23555666665554               22233321            1123445555665553


Q ss_pred             CCCCCccccCCCCccCCCCCCcCeEeeecCC
Q 048322          408 EQLKPWRQGRGLSMGFQRLTSLQSLKIWNCP  438 (498)
Q Consensus       408 ~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~  438 (498)
                       .++.      +|.++..+++|+.|.+.+++
T Consensus       183 -~l~~------ip~~~~~~~~L~~l~L~~Np  206 (290)
T 1p9a_G          183 -SLYT------IPKGFFGSHLLPFAFLHGNP  206 (290)
T ss_dssp             -CCCC------CCTTTTTTCCCSEEECCSCC
T ss_pred             -cCCc------cChhhcccccCCeEEeCCCC
Confidence             2332      26666666667777766544

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.42  E-value=7.8e-13  Score=126.85  Aligned_cols=186  Identities=15%  Similarity=0.179  Sum_probs=121.7

Q ss_pred             CCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCCCCCccccceeeccccccceecCccccCCCCCCCCCC
Q 048322          174 KCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPSLGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPS  253 (498)
Q Consensus       174 ~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~  253 (498)
                      ++|++|+++++....+|. +.  .+++|++|++++| .+..+++++.+++|++|+++++. +                  
T Consensus        41 ~~L~~L~l~~~~i~~l~~-~~--~l~~L~~L~L~~n-~i~~~~~~~~l~~L~~L~L~~n~-l------------------   97 (308)
T 1h6u_A           41 DGITTLSAFGTGVTTIEG-VQ--YLNNLIGLELKDN-QITDLAPLKNLTKITELELSGNP-L------------------   97 (308)
T ss_dssp             HTCCEEECTTSCCCCCTT-GG--GCTTCCEEECCSS-CCCCCGGGTTCCSCCEEECCSCC-C------------------
T ss_pred             CCcCEEEeeCCCccCchh-hh--ccCCCCEEEccCC-cCCCChhHccCCCCCEEEccCCc-C------------------
Confidence            566666666666655553 33  3666666666664 44455555555566666555532 2                  


Q ss_pred             CceeeccCCCccccccccccCCccccCCCccceeeeccCCCccccCCCCcchHHHHHHhcccccccCCCCccccEEEecC
Q 048322          254 LKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSYPRLCRLEVDE  333 (498)
Q Consensus       254 L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~L~l~~  333 (498)
                                  +.+.       .+..+++|++|++++| .++ .+|                  .+..+++|++|++++
T Consensus        98 ------------~~~~-------~~~~l~~L~~L~l~~n-~l~-~~~------------------~l~~l~~L~~L~l~~  138 (308)
T 1h6u_A           98 ------------KNVS-------AIAGLQSIKTLDLTST-QIT-DVT------------------PLAGLSNLQVLYLDL  138 (308)
T ss_dssp             ------------SCCG-------GGTTCTTCCEEECTTS-CCC-CCG------------------GGTTCTTCCEEECCS
T ss_pred             ------------CCch-------hhcCCCCCCEEECCCC-CCC-Cch------------------hhcCCCCCCEEECCC
Confidence                        2111       1122788888988887 343 333                  345688999999999


Q ss_pred             CCcceecCCCCCCCccEEEEeccEeeeecCCCCccCCCCCCcCC--CCCCCCCeEEecCC------CCCCCCCccEEEEc
Q 048322          334 CKELVCRTPIDSKLIKFMTISNSSLDMIGCKGMLYDSQAGSSLP--KPMTTTNVLEFGKL------LEPGFQILETLVIG  405 (498)
Q Consensus       334 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~l~~lp--~~l~~L~~L~i~~~------~~~~lp~L~~L~l~  405 (498)
                      |....++....+++|+.|++++|.+               ..++  ..+++|+.|++++|      .+..+++|+.|+++
T Consensus       139 n~l~~~~~l~~l~~L~~L~l~~n~l---------------~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~  203 (308)
T 1h6u_A          139 NQITNISPLAGLTNLQYLSIGNAQV---------------SDLTPLANLSKLTTLKADDNKISDISPLASLPNLIEVHLK  203 (308)
T ss_dssp             SCCCCCGGGGGCTTCCEEECCSSCC---------------CCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECT
T ss_pred             CccCcCccccCCCCccEEEccCCcC---------------CCChhhcCCCCCCEEECCCCccCcChhhcCCCCCCEEEcc
Confidence            9877766666789999999988733               2222  34578999999998      24456779999998


Q ss_pred             CCCCCCCccccCCCCccCCCCCCcCeEeeecCCCCCcCCC
Q 048322          406 NSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPNLTLFPE  445 (498)
Q Consensus       406 ~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~~l~~lp~  445 (498)
                      +|. ++.+      + .+..+++|++|++++| .+...|.
T Consensus       204 ~N~-l~~~------~-~l~~l~~L~~L~l~~N-~i~~~~~  234 (308)
T 1h6u_A          204 NNQ-ISDV------S-PLANTSNLFIVTLTNQ-TITNQPV  234 (308)
T ss_dssp             TSC-CCBC------G-GGTTCTTCCEEEEEEE-EEECCCE
T ss_pred             CCc-cCcc------c-cccCCCCCCEEEccCC-eeecCCe
Confidence            854 4432      4 3678899999999886 3455443

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.41  E-value=1.3e-11  Score=117.24  Aligned_cols=194  Identities=19%  Similarity=0.190  Sum_probs=133.0

Q ss_pred             CCCCccEEeEeCCCCCCCCCC-CCCccccceeeccccccceecCccccCCCCCCCCCCCceeeccCCCccccccccccCC
Q 048322          197 LFSKIEFLELENCNNCVSLPS-LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFENLPEWWHWDTDIKGN  275 (498)
Q Consensus       197 ~l~~L~~L~l~~c~~~~~lp~-i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~  275 (498)
                      .+++++.+++++ ..++.+|. +.  ++++.|+++++ .+..++...+.     .+++|+.|+++++ .++.+...  + 
T Consensus         8 ~l~~l~~l~~~~-~~l~~ip~~~~--~~l~~L~L~~N-~l~~~~~~~~~-----~l~~L~~L~L~~n-~l~~~~~~--~-   74 (290)
T 1p9a_G            8 KVASHLEVNCDK-RNLTALPPDLP--KDTTILHLSEN-LLYTFSLATLM-----PYTRLTQLNLDRA-ELTKLQVD--G-   74 (290)
T ss_dssp             CSTTCCEEECTT-SCCSSCCSCCC--TTCCEEECTTS-CCSEEEGGGGT-----TCTTCCEEECTTS-CCCEEECC--S-
T ss_pred             ccCCccEEECCC-CCCCcCCCCCC--CCCCEEEcCCC-cCCccCHHHhh-----cCCCCCEEECCCC-ccCcccCC--C-
Confidence            478899999987 46788886 43  68999999985 46666544333     4889999999876 45544321  2 


Q ss_pred             ccccCCCccceeeeccCCCccccCCCCcchHHHHHHhcccccccCCCCccccEEEecCCCcceecC--CCCCCCccEEEE
Q 048322          276 VHVDIFPRLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSYPRLCRLEVDECKELVCRT--PIDSKLIKFMTI  353 (498)
Q Consensus       276 ~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l  353 (498)
                          .+++|++|+++++ .++ .+|.                 .+..+++|++|++++|....++.  ...+++|+.|++
T Consensus        75 ----~l~~L~~L~Ls~N-~l~-~l~~-----------------~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L  131 (290)
T 1p9a_G           75 ----TLPVLGTLDLSHN-QLQ-SLPL-----------------LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL  131 (290)
T ss_dssp             ----CCTTCCEEECCSS-CCS-SCCC-----------------CTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEEC
T ss_pred             ----CCCcCCEEECCCC-cCC-cCch-----------------hhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEEC
Confidence                2889999999887 454 5664                 44557788888888887665442  334677777777


Q ss_pred             eccEeeeecCCCCccCCCCCCcCCCCCCCCCeEEecCCCCCCCCCccEEEEcCCCCCCCccccCCCCc-cCCCCCCcCeE
Q 048322          354 SNSSLDMIGCKGMLYDSQAGSSLPKPMTTTNVLEFGKLLEPGFQILETLVIGNSEQLKPWRQGRGLSM-GFQRLTSLQSL  432 (498)
Q Consensus       354 ~~~~l~~~~~~~l~~~~~~l~~lp~~l~~L~~L~i~~~~~~~lp~L~~L~l~~c~~L~~l~~l~~l~~-~l~~l~~L~~L  432 (498)
                      ++|               .+..+|..            .+..+++|+.|+++++ .++.+      |. .+..+++|++|
T Consensus       132 ~~N---------------~l~~~~~~------------~~~~l~~L~~L~L~~N-~l~~l------~~~~~~~l~~L~~L  177 (290)
T 1p9a_G          132 KGN---------------ELKTLPPG------------LLTPTPKLEKLSLANN-NLTEL------PAGLLNGLENLDTL  177 (290)
T ss_dssp             TTS---------------CCCCCCTT------------TTTTCTTCCEEECTTS-CCSCC------CTTTTTTCTTCCEE
T ss_pred             CCC---------------CCCccChh------------hcccccCCCEEECCCC-cCCcc------CHHHhcCcCCCCEE
Confidence            665               23333321            1244666888888774 45443      54 45789999999


Q ss_pred             eeecCCCCCcCCCC-CccccccceeeccCc
Q 048322          433 KIWNCPNLTLFPEV-GLPSSLLDLYVNNCP  461 (498)
Q Consensus       433 ~l~~c~~l~~lp~~-~~~~sL~~L~i~~c~  461 (498)
                      +++++ .++.+|.. ...++|+.|++.++|
T Consensus       178 ~L~~N-~l~~ip~~~~~~~~L~~l~L~~Np  206 (290)
T 1p9a_G          178 LLQEN-SLYTIPKGFFGSHLLPFAFLHGNP  206 (290)
T ss_dssp             ECCSS-CCCCCCTTTTTTCCCSEEECCSCC
T ss_pred             ECCCC-cCCccChhhcccccCCeEEeCCCC
Confidence            99985 78899876 334689999998654

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.40  E-value=8e-12  Score=117.78  Aligned_cols=34  Identities=35%  Similarity=0.456  Sum_probs=20.4

Q ss_pred             CccEEEEcCCCCCCCccccCCCCc-cCCCCCCcCeEeeecCC
Q 048322          398 ILETLVIGNSEQLKPWRQGRGLSM-GFQRLTSLQSLKIWNCP  438 (498)
Q Consensus       398 ~L~~L~l~~c~~L~~l~~l~~l~~-~l~~l~~L~~L~l~~c~  438 (498)
                      +|+.|+++++. ++.+      |. .+..+++|++|++++++
T Consensus       201 ~L~~L~L~~n~-l~~~------~~~~~~~l~~L~~L~l~~N~  235 (276)
T 2z62_A          201 RLKELALDTNQ-LKSV------PDGIFDRLTSLQKIWLHTNP  235 (276)
T ss_dssp             CEEEEECCSSC-CSCC------CTTTTTTCCSCCEEECCSSC
T ss_pred             cccEEECCCCc-eeec------CHhHhcccccccEEEccCCc
Confidence            46667776643 4432      33 34667777777777654

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.39  E-value=9.5e-13  Score=126.52  Aligned_cols=194  Identities=15%  Similarity=0.152  Sum_probs=92.0

Q ss_pred             CCCCceEEEeecCCC-CCCccccCCCCCCccEEeEeCCCCCCCCCC-CCCc-----cccceeeccccccceecCccccCC
Q 048322          173 HKCIKKVAIRNYGGA-RFPLWIGDPLFSKIEFLELENCNNCVSLPS-LGLL-----SSLKHLAVKGLKKLKSIESEVYGE  245 (498)
Q Consensus       173 ~~~L~~L~l~~~~~~-~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~-i~~l-----~~L~~L~l~~~~~l~~i~~~~~~~  245 (498)
                      +++|++|+++++... ..|..+....+++|++|++++| .+..+|. ++.+     ++|++|+++++ .+..++...++ 
T Consensus        94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~~~~~~L~~L~L~~N-~l~~~~~~~~~-  170 (312)
T 1wwl_A           94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNV-SWATRDAWLAELQQWLKPGLKVLSIAQA-HSLNFSCEQVR-  170 (312)
T ss_dssp             TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESC-BCSSSSSHHHHHHTTCCTTCCEEEEESC-SCCCCCTTTCC-
T ss_pred             cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCC-CCcchhHHHHHHHHhhcCCCcEEEeeCC-CCccchHHHhc-
Confidence            356666666666544 3454431114566666666664 3333343 4444     56666666653 34444432222 


Q ss_pred             CCCCCCCCCceeeccCCCccccc--cccccCCccccCCCccceeeeccCCCccccCCCCcchHHHHHHhcccccccCCCC
Q 048322          246 GFSMPFPSLKILRFENLPEWWHW--DTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSY  323 (498)
Q Consensus       246 ~~~~~~~~L~~L~l~~~~~l~~~--~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~~l  323 (498)
                          .+++|++|+++++.-....  .....    ...+++|++|++++| .++ .+|.    +..         ..+..+
T Consensus       171 ----~l~~L~~L~Ls~N~l~~~~~~~~~~~----~~~l~~L~~L~L~~N-~l~-~~~~----~~~---------~~~~~l  227 (312)
T 1wwl_A          171 ----VFPALSTLDLSDNPELGERGLISALC----PLKFPTLQVLALRNA-GME-TPSG----VCS---------ALAAAR  227 (312)
T ss_dssp             ----CCSSCCEEECCSCTTCHHHHHHHHSC----TTSCTTCCEEECTTS-CCC-CHHH----HHH---------HHHHTT
T ss_pred             ----cCCCCCEEECCCCCcCcchHHHHHHH----hccCCCCCEEECCCC-cCc-chHH----HHH---------HHHhcC
Confidence                3566666666655321111  00100    011566666666665 222 1110    000         011124


Q ss_pred             ccccEEEecCCCcceec---CCCCCCCccEEEEeccEeeeecCCCCccCCCCCCcCCCCC-CCCCeEEecCC------CC
Q 048322          324 PRLCRLEVDECKELVCR---TPIDSKLIKFMTISNSSLDMIGCKGMLYDSQAGSSLPKPM-TTTNVLEFGKL------LE  393 (498)
Q Consensus       324 ~~L~~L~l~~~~~~~~~---~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~l~~lp~~l-~~L~~L~i~~~------~~  393 (498)
                      ++|++|++++|......   ....+++|+.|++++|               .++.+|..+ ++|+.|++++|      .+
T Consensus       228 ~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N---------------~l~~ip~~~~~~L~~L~Ls~N~l~~~p~~  292 (312)
T 1wwl_A          228 VQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT---------------GLKQVPKGLPAKLSVLDLSYNRLDRNPSP  292 (312)
T ss_dssp             CCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTS---------------CCSSCCSSCCSEEEEEECCSSCCCSCCCT
T ss_pred             CCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCC---------------ccChhhhhccCCceEEECCCCCCCCChhH
Confidence            55666666666544322   2223456666666654               333444444 46666666666      23


Q ss_pred             CCCCCccEEEEcCC
Q 048322          394 PGFQILETLVIGNS  407 (498)
Q Consensus       394 ~~lp~L~~L~l~~c  407 (498)
                      ..+++|++|+++++
T Consensus       293 ~~l~~L~~L~L~~N  306 (312)
T 1wwl_A          293 DELPQVGNLSLKGN  306 (312)
T ss_dssp             TTSCEEEEEECTTC
T ss_pred             hhCCCCCEEeccCC
Confidence            34556777777764

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.39  E-value=2.2e-12  Score=121.36  Aligned_cols=179  Identities=21%  Similarity=0.217  Sum_probs=114.2

Q ss_pred             CCCCccEEeEeCCCCCCCCCCCCCccccceeeccccccceecCccccCCCCCCCCCCCceeeccCCCccccccccccCCc
Q 048322          197 LFSKIEFLELENCNNCVSLPSLGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFENLPEWWHWDTDIKGNV  276 (498)
Q Consensus       197 ~l~~L~~L~l~~c~~~~~lp~i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~  276 (498)
                      .+++|+.|++.+| .+..++.++.+++|++|+++++. +..++ .      +..+++|++|+++++ .++.+.+..... 
T Consensus        39 ~l~~L~~L~l~~~-~i~~~~~l~~l~~L~~L~l~~n~-l~~~~-~------l~~l~~L~~L~L~~n-~l~~~~~~~~~~-  107 (272)
T 3rfs_A           39 ELNSIDQIIANNS-DIKSVQGIQYLPNVRYLALGGNK-LHDIS-A------LKELTNLTYLILTGN-QLQSLPNGVFDK-  107 (272)
T ss_dssp             HHTTCCEEECTTS-CCCCCTTGGGCTTCCEEECTTSC-CCCCG-G------GTTCTTCCEEECTTS-CCCCCCTTTTTT-
T ss_pred             cccceeeeeeCCC-CcccccccccCCCCcEEECCCCC-CCCch-h------hcCCCCCCEEECCCC-ccCccChhHhcC-
Confidence            4788999999986 57788889999999999999864 55543 1      235888888888876 455544332222 


Q ss_pred             cccCCCccceeeeccCCCccccCCCCcchHHHHHHhcccccccCCCCccccEEEecCCCcceecC--CCCCCCccEEEEe
Q 048322          277 HVDIFPRLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSYPRLCRLEVDECKELVCRT--PIDSKLIKFMTIS  354 (498)
Q Consensus       277 ~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~  354 (498)
                          +++|++|++++| .++ .+|..                .+..+++|++|++++|....++.  ...+++|+.|+++
T Consensus       108 ----l~~L~~L~L~~n-~l~-~~~~~----------------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  165 (272)
T 3rfs_A          108 ----LTNLKELVLVEN-QLQ-SLPDG----------------VFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLS  165 (272)
T ss_dssp             ----CTTCCEEECTTS-CCC-CCCTT----------------TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             ----CcCCCEEECCCC-cCC-ccCHH----------------HhccCCCCCEEECCCCccCccCHHHhccCccCCEEECC
Confidence                788888888887 444 33321                35567788888888886555443  2346777777776


Q ss_pred             ccEeeeecCCCCccCCCCCCcCCCCCCCCCeEEecCCCCCCCCCccEEEEcCCCCCCCccccCCCCccCCCCCCcCeEee
Q 048322          355 NSSLDMIGCKGMLYDSQAGSSLPKPMTTTNVLEFGKLLEPGFQILETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKI  434 (498)
Q Consensus       355 ~~~l~~~~~~~l~~~~~~l~~lp~~l~~L~~L~i~~~~~~~lp~L~~L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l  434 (498)
                      +|.               +..+|..            .++.+++|+.|+++++. ++.+     .+..+..+++|++|++
T Consensus       166 ~n~---------------l~~~~~~------------~~~~l~~L~~L~L~~N~-l~~~-----~~~~~~~l~~L~~L~l  212 (272)
T 3rfs_A          166 YNQ---------------LQSLPEG------------VFDKLTQLKDLRLYQNQ-LKSV-----PDGVFDRLTSLQYIWL  212 (272)
T ss_dssp             SSC---------------CCCCCTT------------TTTTCTTCCEEECCSSC-CSCC-----CTTTTTTCTTCCEEEC
T ss_pred             CCC---------------cCccCHH------------HhcCCccCCEEECCCCc-CCcc-----CHHHHhCCcCCCEEEc
Confidence            652               2222211            12345566666666643 3322     1344667777888887


Q ss_pred             ecCCCCC
Q 048322          435 WNCPNLT  441 (498)
Q Consensus       435 ~~c~~l~  441 (498)
                      ++|+...
T Consensus       213 ~~N~~~~  219 (272)
T 3rfs_A          213 HDNPWDC  219 (272)
T ss_dssp             CSSCBCC
T ss_pred             cCCCccc
Confidence            7765433

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.39  E-value=1.2e-11  Score=116.28  Aligned_cols=150  Identities=19%  Similarity=0.204  Sum_probs=110.3

Q ss_pred             CCCceEEEeecCCCCCCc-cccCCCCCCccEEeEeCCCCCCCCCC--CCCccccceeeccccccceecCccccCCCCCCC
Q 048322          174 KCIKKVAIRNYGGARFPL-WIGDPLFSKIEFLELENCNNCVSLPS--LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMP  250 (498)
Q Consensus       174 ~~L~~L~l~~~~~~~~p~-~~~~~~l~~L~~L~l~~c~~~~~lp~--i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~  250 (498)
                      +++++|+++++....+|. .+.  .+++|++|++++| .+..+|.  ++.+++|++|+++++ .+..++...+.     .
T Consensus        37 ~~l~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~-----~  107 (270)
T 2o6q_A           37 ADTKKLDLQSNKLSSLPSKAFH--RLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWVTDN-KLQALPIGVFD-----Q  107 (270)
T ss_dssp             TTCSEEECCSSCCSCCCTTSSS--SCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEECCSS-CCCCCCTTTTT-----T
T ss_pred             CCCCEEECcCCCCCeeCHHHhc--CCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEECCCC-cCCcCCHhHcc-----c
Confidence            678999999988877775 344  5889999999885 5667776  678999999999885 47777765543     5


Q ss_pred             CCCCceeeccCCCccccccccccCCccccCCCccceeeeccCCCccccCCCCcchHHHHHHhcccccccCCCCccccEEE
Q 048322          251 FPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSYPRLCRLE  330 (498)
Q Consensus       251 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~L~  330 (498)
                      +++|++|+++++ .++.+.+....     .+++|++|++++| .++ .+|..                .+..+++|++|+
T Consensus       108 l~~L~~L~l~~n-~l~~~~~~~~~-----~l~~L~~L~Ls~n-~l~-~~~~~----------------~~~~l~~L~~L~  163 (270)
T 2o6q_A          108 LVNLAELRLDRN-QLKSLPPRVFD-----SLTKLTYLSLGYN-ELQ-SLPKG----------------VFDKLTSLKELR  163 (270)
T ss_dssp             CSSCCEEECCSS-CCCCCCTTTTT-----TCTTCCEEECCSS-CCC-CCCTT----------------TTTTCTTCCEEE
T ss_pred             ccCCCEEECCCC-ccCeeCHHHhC-----cCcCCCEEECCCC-cCC-ccCHh----------------HccCCcccceeE
Confidence            889999999876 44544433222     2889999999988 454 45531                356688999999


Q ss_pred             ecCCCcceecC--CCCCCCccEEEEecc
Q 048322          331 VDECKELVCRT--PIDSKLIKFMTISNS  356 (498)
Q Consensus       331 l~~~~~~~~~~--~~~~~~L~~L~l~~~  356 (498)
                      +++|....++.  ...+++|+.|++++|
T Consensus       164 L~~n~l~~~~~~~~~~l~~L~~L~L~~N  191 (270)
T 2o6q_A          164 LYNNQLKRVPEGAFDKLTELKTLKLDNN  191 (270)
T ss_dssp             CCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             ecCCcCcEeChhHhccCCCcCEEECCCC
Confidence            99887666543  334788888888876

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.38  E-value=2e-14  Score=139.83  Aligned_cols=225  Identities=17%  Similarity=0.217  Sum_probs=118.1

Q ss_pred             CCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCC-CCC-CCCccccceeeccccccce-ecCccccCCCCCCC
Q 048322          174 KCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVS-LPS-LGLLSSLKHLAVKGLKKLK-SIESEVYGEGFSMP  250 (498)
Q Consensus       174 ~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~-lp~-i~~l~~L~~L~l~~~~~l~-~i~~~~~~~~~~~~  250 (498)
                      ++++.|++.++.....+..+.  .+++|++|++++|..... +|. ++.+++|++|++++|. +. ..+..+      ..
T Consensus        70 ~~l~~L~l~~n~l~~~~~~~~--~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~l------~~  140 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAEHF--SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR-LSDPIVNTL------AK  140 (336)
T ss_dssp             TTCSEEECTTCEECSCCCSCC--CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCB-CCHHHHHHH------TT
T ss_pred             ccceEEEcCCccccccchhhc--cCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcc-cCHHHHHHH------hc
Confidence            456667666665444433333  467777777777642212 454 6677777777777763 32 222222      13


Q ss_pred             CCCCceeeccCCCcccccc-ccccCCccccCCCccceeeeccCCCcccc-CCCCcchHHHHHHhcccccccCCCCc-ccc
Q 048322          251 FPSLKILRFENLPEWWHWD-TDIKGNVHVDIFPRLQELSVVKCPKLSGK-LPELLPSLEILVSKCEKLVVSLSSYP-RLC  327 (498)
Q Consensus       251 ~~~L~~L~l~~~~~l~~~~-~~~~~~~~~~~l~~L~~L~l~~c~~l~~~-lp~~l~~L~~Li~~~~~l~~~~~~l~-~L~  327 (498)
                      +++|++|+++++..++... +...     ..+++|++|++++|+.+++. ++.                 .+..++ +|+
T Consensus       141 ~~~L~~L~L~~~~~l~~~~l~~~~-----~~~~~L~~L~l~~~~~l~~~~~~~-----------------~~~~l~~~L~  198 (336)
T 2ast_B          141 NSNLVRLNLSGCSGFSEFALQTLL-----SSCSRLDELNLSWCFDFTEKHVQV-----------------AVAHVSETIT  198 (336)
T ss_dssp             CTTCSEEECTTCBSCCHHHHHHHH-----HHCTTCCEEECCCCTTCCHHHHHH-----------------HHHHSCTTCC
T ss_pred             CCCCCEEECCCCCCCCHHHHHHHH-----hcCCCCCEEcCCCCCCcChHHHHH-----------------HHHhcccCCC
Confidence            6777777777765444321 1111     12677777777777544311 110                 122245 677


Q ss_pred             EEEecCCCc-ce---ecC-CCCCCCccEEEEeccE-eeeecCCCCccCCCCCCcCCCCCCCCCeEEecCCCCCCCCCccE
Q 048322          328 RLEVDECKE-LV---CRT-PIDSKLIKFMTISNSS-LDMIGCKGMLYDSQAGSSLPKPMTTTNVLEFGKLLEPGFQILET  401 (498)
Q Consensus       328 ~L~l~~~~~-~~---~~~-~~~~~~L~~L~l~~~~-l~~~~~~~l~~~~~~l~~lp~~l~~L~~L~i~~~~~~~lp~L~~  401 (498)
                      +|++++|.. +.   ++. ...+++|+.|++++|. +...              .+.             .+..+++|++
T Consensus       199 ~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~--------------~~~-------------~l~~l~~L~~  251 (336)
T 2ast_B          199 QLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKND--------------CFQ-------------EFFQLNYLQH  251 (336)
T ss_dssp             EEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGG--------------GGG-------------GGGGCTTCCE
T ss_pred             EEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHH--------------HHH-------------HHhCCCCCCE
Confidence            777777641 11   111 1125666666665541 1100              000             1234566778


Q ss_pred             EEEcCCCCCCCccccCCCCccCCCCCCcCeEeeecCCCCCcCCCCC---ccccccceeeccCchhHhhh
Q 048322          402 LVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPNLTLFPEVG---LPSSLLDLYVNNCPRLKKVC  467 (498)
Q Consensus       402 L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~~l~~lp~~~---~~~sL~~L~i~~c~~l~~~~  467 (498)
                      |++++|..+..- .    ...+..+++|++|++++|     ++..+   +..+|+.|+++ |..+....
T Consensus       252 L~l~~~~~~~~~-~----~~~l~~~~~L~~L~l~~~-----i~~~~~~~l~~~l~~L~l~-~n~l~~~~  309 (336)
T 2ast_B          252 LSLSRCYDIIPE-T----LLELGEIPTLKTLQVFGI-----VPDGTLQLLKEALPHLQIN-CSHFTTIA  309 (336)
T ss_dssp             EECTTCTTCCGG-G----GGGGGGCTTCCEEECTTS-----SCTTCHHHHHHHSTTSEES-CCCSCCTT
T ss_pred             eeCCCCCCCCHH-H----HHHHhcCCCCCEEeccCc-----cCHHHHHHHHhhCcceEEe-cccCcccc
Confidence            888777644310 0    114567888888888887     44432   22457778875 44444433

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.38  E-value=3.9e-12  Score=119.93  Aligned_cols=186  Identities=16%  Similarity=0.165  Sum_probs=97.9

Q ss_pred             CCCceEEEeecCCCCCCc-cccCCCCCCccEEeEeCCCCCCCCCC--CCCccccceeeccccccceecCccccCCCCCCC
Q 048322          174 KCIKKVAIRNYGGARFPL-WIGDPLFSKIEFLELENCNNCVSLPS--LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMP  250 (498)
Q Consensus       174 ~~L~~L~l~~~~~~~~p~-~~~~~~l~~L~~L~l~~c~~~~~lp~--i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~  250 (498)
                      ++|++|+++++....++. .+.  .+++|++|++++| .+..+++  ++.+++|++|+++++ .+..++...+.     .
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~--~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~-----~   98 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFF--SFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFS-----G   98 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTT--TCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTT-----T
T ss_pred             CCccEEECCCCcccccCHhHhc--cccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCC-ccCccChhhhc-----C
Confidence            456777777666655544 343  4667777777765 4445443  666777777777664 35555543332     3


Q ss_pred             CCCCceeeccCCCccccccccccCCccccCCCccceeeeccCCCccc-cCCCCcchHHHHHHhcccccccCCCCccccEE
Q 048322          251 FPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSG-KLPELLPSLEILVSKCEKLVVSLSSYPRLCRL  329 (498)
Q Consensus       251 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~-~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~L  329 (498)
                      +++|++|++.++ .+.......     +..+++|++|++++|. +.+ .+|.                 .+..+++|++|
T Consensus        99 l~~L~~L~l~~n-~l~~~~~~~-----~~~l~~L~~L~l~~n~-l~~~~l~~-----------------~~~~l~~L~~L  154 (276)
T 2z62_A           99 LSSLQKLVAVET-NLASLENFP-----IGHLKTLKELNVAHNL-IQSFKLPE-----------------YFSNLTNLEHL  154 (276)
T ss_dssp             CTTCCEEECTTS-CCCCSTTCC-----CTTCTTCCEEECCSSC-CCCCCCCG-----------------GGGGCTTCCEE
T ss_pred             CccccEEECCCC-CccccCchh-----cccCCCCCEEECcCCc-cceecCch-----------------hhccCCCCCEE
Confidence            667777777655 333332111     1226677777777663 321 1333                 23345566666


Q ss_pred             EecCCCcceecC--CCCCCCcc----EEEEeccEeeeecCCCCccCCCCCCcCCCCC---CCCCeEEecCC--------C
Q 048322          330 EVDECKELVCRT--PIDSKLIK----FMTISNSSLDMIGCKGMLYDSQAGSSLPKPM---TTTNVLEFGKL--------L  392 (498)
Q Consensus       330 ~l~~~~~~~~~~--~~~~~~L~----~L~l~~~~l~~~~~~~l~~~~~~l~~lp~~l---~~L~~L~i~~~--------~  392 (498)
                      ++++|....++.  ...+++|+    .|++++|.+.               .++...   .+|+.|++++|        .
T Consensus       155 ~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~---------------~~~~~~~~~~~L~~L~L~~n~l~~~~~~~  219 (276)
T 2z62_A          155 DLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN---------------FIQPGAFKEIRLKELALDTNQLKSVPDGI  219 (276)
T ss_dssp             ECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCC---------------EECTTSSCSCCEEEEECCSSCCSCCCTTT
T ss_pred             ECCCCCCCcCCHHHhhhhhhccccceeeecCCCccc---------------ccCccccCCCcccEEECCCCceeecCHhH
Confidence            666665444321  11122333    5555554222               222111   35666666666        1


Q ss_pred             CCCCCCccEEEEcCC
Q 048322          393 EPGFQILETLVIGNS  407 (498)
Q Consensus       393 ~~~lp~L~~L~l~~c  407 (498)
                      +..+++|+.|+++++
T Consensus       220 ~~~l~~L~~L~l~~N  234 (276)
T 2z62_A          220 FDRLTSLQKIWLHTN  234 (276)
T ss_dssp             TTTCCSCCEEECCSS
T ss_pred             hcccccccEEEccCC
Confidence            345666777777764

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.32  E-value=6.6e-12  Score=112.03  Aligned_cols=148  Identities=14%  Similarity=0.162  Sum_probs=87.7

Q ss_pred             CCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCCCCCccccceeecccccccee-cCccccCCCCCCCCC
Q 048322          174 KCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPSLGLLSSLKHLAVKGLKKLKS-IESEVYGEGFSMPFP  252 (498)
Q Consensus       174 ~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~i~~l~~L~~L~l~~~~~l~~-i~~~~~~~~~~~~~~  252 (498)
                      ++|++|+++++....+| .+.  .+++|++|++++| .+..++.++.+++|++|+++++. +.. .+..+      ..++
T Consensus        44 ~~L~~L~l~~n~i~~l~-~l~--~l~~L~~L~l~~n-~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~l------~~l~  112 (197)
T 4ezg_A           44 NSLTYITLANINVTDLT-GIE--YAHNIKDLTINNI-HATNYNPISGLSNLERLRIMGKD-VTSDKIPNL------SGLT  112 (197)
T ss_dssp             HTCCEEEEESSCCSCCT-TGG--GCTTCSEEEEESC-CCSCCGGGTTCTTCCEEEEECTT-CBGGGSCCC------TTCT
T ss_pred             CCccEEeccCCCccChH-HHh--cCCCCCEEEccCC-CCCcchhhhcCCCCCEEEeECCc-cCcccChhh------cCCC
Confidence            56677777776666666 344  4677777777776 55566667777777777777643 433 22222      2367


Q ss_pred             CCceeeccCCCccccccccccCCccccCCCccceeeeccCCCccccCCCCcchHHHHHHhcccccccCCCCccccEEEec
Q 048322          253 SLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSYPRLCRLEVD  332 (498)
Q Consensus       253 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~L~l~  332 (498)
                      +|++|+++++ .+....+..     +..+++|++|++++|..+. .+|                  .+..+++|++|+++
T Consensus       113 ~L~~L~Ls~n-~i~~~~~~~-----l~~l~~L~~L~L~~n~~i~-~~~------------------~l~~l~~L~~L~l~  167 (197)
T 4ezg_A          113 SLTLLDISHS-AHDDSILTK-----INTLPKVNSIDLSYNGAIT-DIM------------------PLKTLPELKSLNIQ  167 (197)
T ss_dssp             TCCEEECCSS-BCBGGGHHH-----HTTCSSCCEEECCSCTBCC-CCG------------------GGGGCSSCCEEECT
T ss_pred             CCCEEEecCC-ccCcHhHHH-----HhhCCCCCEEEccCCCCcc-ccH------------------hhcCCCCCCEEECC
Confidence            7777777665 333222111     1227777788877775343 333                  23346677777777


Q ss_pred             CCCcceecCCCCCCCccEEEEeccE
Q 048322          333 ECKELVCRTPIDSKLIKFMTISNSS  357 (498)
Q Consensus       333 ~~~~~~~~~~~~~~~L~~L~l~~~~  357 (498)
                      +|....++....+++|++|++++|.
T Consensus       168 ~n~i~~~~~l~~l~~L~~L~l~~N~  192 (197)
T 4ezg_A          168 FDGVHDYRGIEDFPKLNQLYAFSQT  192 (197)
T ss_dssp             TBCCCCCTTGGGCSSCCEEEECBC-
T ss_pred             CCCCcChHHhccCCCCCEEEeeCcc
Confidence            7766555544456777777776653

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.31  E-value=4.6e-14  Score=148.21  Aligned_cols=300  Identities=13%  Similarity=0.069  Sum_probs=144.0

Q ss_pred             hcccCCcccEEEEecCCCCCCcChhhHHHhhhcCCCCCCCceEEEeecCCCCC-----CccccCCCCCCccEEeEeCCCC
Q 048322          137 LCEKLNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARF-----PLWIGDPLFSKIEFLELENCNN  211 (498)
Q Consensus       137 l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~-----p~~~~~~~l~~L~~L~l~~c~~  211 (498)
                      ..++++|+.|+|+++.-.+ .. ......++.   .+++|++|+++++....+     +..+.  .+++|++|++++|. 
T Consensus       160 ~~~~~~L~~L~L~~~~~~~-~~-~~~l~~~~~---~~~~L~~L~L~~n~~~~~~~~~l~~~~~--~~~~L~~L~L~~~~-  231 (592)
T 3ogk_B          160 VTHCRKIKTLLMEESSFSE-KD-GKWLHELAQ---HNTSLEVLNFYMTEFAKISPKDLETIAR--NCRSLVSVKVGDFE-  231 (592)
T ss_dssp             HHHCTTCSEEECTTCEEEC-CC-SHHHHHHHH---HCCCCCEEECTTCCCSSCCHHHHHHHHH--HCTTCCEEECSSCB-
T ss_pred             HhhCCCCCEEECccccccC-cc-hhHHHHHHh---cCCCccEEEeeccCCCccCHHHHHHHHh--hCCCCcEEeccCcc-
Confidence            3467788888887664100 00 000111222   246777777776655422     22222  36777777777753 


Q ss_pred             CCCCCC-CCCccccceeeccccccceecCccccCCCCCCCCCCCceeeccCCCccccccccccCCccccCCCccceeeec
Q 048322          212 CVSLPS-LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVV  290 (498)
Q Consensus       212 ~~~lp~-i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~  290 (498)
                      +..+|. ++.+++|++|.++.+......+. .+  ..+..+++|+.|.+.++.. ..+ +...     ..+++|++|+++
T Consensus       232 ~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~-~~--~~l~~~~~L~~L~l~~~~~-~~l-~~~~-----~~~~~L~~L~Ls  301 (592)
T 3ogk_B          232 ILELVGFFKAAANLEEFCGGSLNEDIGMPE-KY--MNLVFPRKLCRLGLSYMGP-NEM-PILF-----PFAAQIRKLDLL  301 (592)
T ss_dssp             GGGGHHHHHHCTTCCEEEECBCCCCTTCTT-SS--SCCCCCTTCCEEEETTCCT-TTG-GGGG-----GGGGGCCEEEET
T ss_pred             HHHHHHHHhhhhHHHhhcccccccccchHH-HH--HHhhccccccccCccccch-hHH-HHHH-----hhcCCCcEEecC
Confidence            334444 55666777776654321111010 00  1123355566665544311 111 1111     115566666666


Q ss_pred             cCCCcccc-C---CCCcchHHHH-HHhccc---ccccCCCCccccEEEecC----------CCcceecC----CCCCCCc
Q 048322          291 KCPKLSGK-L---PELLPSLEIL-VSKCEK---LVVSLSSYPRLCRLEVDE----------CKELVCRT----PIDSKLI  348 (498)
Q Consensus       291 ~c~~l~~~-l---p~~l~~L~~L-i~~~~~---l~~~~~~l~~L~~L~l~~----------~~~~~~~~----~~~~~~L  348 (498)
                      +|. +.+. +   ...+++|+.| +..+-.   +......+++|++|++.+          |..+....    ...+++|
T Consensus       302 ~~~-l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L  380 (592)
T 3ogk_B          302 YAL-LETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQEL  380 (592)
T ss_dssp             TCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTC
T ss_pred             CCc-CCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccC
Confidence            654 2211 1   0223334433 321100   000111245566666663          33332110    1114556


Q ss_pred             cEEEEeccEeeee-------cCCCCc-------cCCCCCCcCC---------CCCCCCCeEEecCCC-----------CC
Q 048322          349 KFMTISNSSLDMI-------GCKGML-------YDSQAGSSLP---------KPMTTTNVLEFGKLL-----------EP  394 (498)
Q Consensus       349 ~~L~l~~~~l~~~-------~~~~l~-------~~~~~l~~lp---------~~l~~L~~L~i~~~~-----------~~  394 (498)
                      ++|++..+.+...       .|+.|.       ..|+.++..|         ..+++|+.|++++|.           ..
T Consensus       381 ~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~  460 (592)
T 3ogk_B          381 EYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQ  460 (592)
T ss_dssp             SEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHH
T ss_pred             eEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHH
Confidence            6665543322111       133332       1345555443         234788889886551           12


Q ss_pred             CCCCccEEEEcCCCCCCCccccCCCCccCCCCCCcCeEeeecCCCCCc--CCCC-CccccccceeeccCc
Q 048322          395 GFQILETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPNLTL--FPEV-GLPSSLLDLYVNNCP  461 (498)
Q Consensus       395 ~lp~L~~L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~~l~~--lp~~-~~~~sL~~L~i~~c~  461 (498)
                      .+|+|+.|++++|. ++..    .++..+..+++|++|++++|+ ++.  ++.. ...++|+.|++++|.
T Consensus       461 ~~~~L~~L~L~~n~-l~~~----~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~  524 (592)
T 3ogk_B          461 YSPNVRWMLLGYVG-ESDE----GLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR  524 (592)
T ss_dssp             SCTTCCEEEECSCC-SSHH----HHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred             hCccceEeeccCCC-CCHH----HHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc
Confidence            47789999998765 4310    113445677889999999987 432  2211 224789999999887

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.29  E-value=9.9e-12  Score=119.28  Aligned_cols=193  Identities=14%  Similarity=0.137  Sum_probs=98.3

Q ss_pred             CCCceEEEeecCCC-CCCccccCCCCCCccEEeEeCCCCCCCCCC-----CCCccccceeeccccccceecCccccCCCC
Q 048322          174 KCIKKVAIRNYGGA-RFPLWIGDPLFSKIEFLELENCNNCVSLPS-----LGLLSSLKHLAVKGLKKLKSIESEVYGEGF  247 (498)
Q Consensus       174 ~~L~~L~l~~~~~~-~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~-----i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~  247 (498)
                      ++|++|+++++... ..|..+....+++|++|++++|......|.     +..+++|++|+++++ .+..++...++   
T Consensus        91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~~~---  166 (310)
T 4glp_A           91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQA-HSPAFSCEQVR---  166 (310)
T ss_dssp             SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECC-SSCCCCTTSCC---
T ss_pred             CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCC-CcchhhHHHhc---
Confidence            45777777766643 233333101466777777776543333331     345667777777664 34444433332   


Q ss_pred             CCCCCCCceeeccCCCcccc--cc-ccccCCccccCCCccceeeeccCCCccccCCCCcchHHHHHHhcccccccCCCCc
Q 048322          248 SMPFPSLKILRFENLPEWWH--WD-TDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSYP  324 (498)
Q Consensus       248 ~~~~~~L~~L~l~~~~~l~~--~~-~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~~l~  324 (498)
                        .+++|++|+++++.-...  .. ....+     .+++|++|++++| .++ .+|.    .-.      .   .+..++
T Consensus       167 --~l~~L~~L~Ls~N~l~~~~~~~~~~~~~-----~l~~L~~L~Ls~N-~l~-~l~~----~~~------~---l~~~l~  224 (310)
T 4glp_A          167 --AFPALTSLDLSDNPGLGERGLMAALCPH-----KFPAIQNLALRNT-GME-TPTG----VCA------A---LAAAGV  224 (310)
T ss_dssp             --CCTTCCEEECCSCTTCHHHHHHTTSCTT-----SSCCCCSCBCCSS-CCC-CHHH----HHH------H---HHHHTC
T ss_pred             --cCCCCCEEECCCCCCccchhhhHHHhhh-----cCCCCCEEECCCC-CCC-chHH----HHH------H---HHhcCC
Confidence              466777777766532111  11 11111     2667777777766 332 2111    000      0   011245


Q ss_pred             cccEEEecCCCccee-cC-CCC---CCCccEEEEeccEeeeecCCCCccCCCCCCcCCCCC-CCCCeEEecCC------C
Q 048322          325 RLCRLEVDECKELVC-RT-PID---SKLIKFMTISNSSLDMIGCKGMLYDSQAGSSLPKPM-TTTNVLEFGKL------L  392 (498)
Q Consensus       325 ~L~~L~l~~~~~~~~-~~-~~~---~~~L~~L~l~~~~l~~~~~~~l~~~~~~l~~lp~~l-~~L~~L~i~~~------~  392 (498)
                      +|++|++++|..... +. ...   +++|++|++++|               .++.+|..+ ++|+.|++++|      .
T Consensus       225 ~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N---------------~l~~lp~~~~~~L~~L~Ls~N~l~~~~~  289 (310)
T 4glp_A          225 QPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFA---------------GLEQVPKGLPAKLRVLDLSSNRLNRAPQ  289 (310)
T ss_dssp             CCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSS---------------CCCSCCSCCCSCCSCEECCSCCCCSCCC
T ss_pred             CCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCC---------------CCCchhhhhcCCCCEEECCCCcCCCCch
Confidence            666777776665443 11 112   357777777665               333444433 56777777776      1


Q ss_pred             CCCCCCccEEEEcCC
Q 048322          393 EPGFQILETLVIGNS  407 (498)
Q Consensus       393 ~~~lp~L~~L~l~~c  407 (498)
                      ...+|+|+.|+++++
T Consensus       290 ~~~l~~L~~L~L~~N  304 (310)
T 4glp_A          290 PDELPEVDNLTLDGN  304 (310)
T ss_dssp             TTSCCCCSCEECSST
T ss_pred             hhhCCCccEEECcCC
Confidence            234566777777764

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.28  E-value=2.2e-11  Score=116.83  Aligned_cols=206  Identities=17%  Similarity=0.174  Sum_probs=111.5

Q ss_pred             CCCccEEeEeCCCCCCCCCC-C--CCccccceeeccccccceecCccccCCCCCCCCCCCceeeccCCCccccccccccC
Q 048322          198 FSKIEFLELENCNNCVSLPS-L--GLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFENLPEWWHWDTDIKG  274 (498)
Q Consensus       198 l~~L~~L~l~~c~~~~~lp~-i--~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~  274 (498)
                      +++|++|++++|......|. +  +.+++|++|+++++. +......+.. .....+++|++|+++++ .+....+....
T Consensus        90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~~~~~~~~-~~~~~~~~L~~L~Ls~n-~l~~~~~~~~~  166 (310)
T 4glp_A           90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVS-WATGRSWLAE-LQQWLKPGLKVLSIAQA-HSPAFSCEQVR  166 (310)
T ss_dssp             HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCC-CSSTTSSHHH-HHTTBCSCCCEEEEECC-SSCCCCTTSCC
T ss_pred             cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeeccc-ccchhhhhHH-HHhhhccCCCEEEeeCC-CcchhhHHHhc
Confidence            46799999999865556665 5  889999999999864 3321110000 00113667777777665 33333322222


Q ss_pred             CccccCCCccceeeeccCCCcccc--CCCCcchHHHHHHhcccccccCCCCccccEEEecCCCcceecCC-----CCCCC
Q 048322          275 NVHVDIFPRLQELSVVKCPKLSGK--LPELLPSLEILVSKCEKLVVSLSSYPRLCRLEVDECKELVCRTP-----IDSKL  347 (498)
Q Consensus       275 ~~~~~~l~~L~~L~l~~c~~l~~~--lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~-----~~~~~  347 (498)
                      .     +++|++|++++|.... .  ++.               ...+..+++|++|++++|....++..     ..+++
T Consensus       167 ~-----l~~L~~L~Ls~N~l~~-~~~~~~---------------~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~  225 (310)
T 4glp_A          167 A-----FPALTSLDLSDNPGLG-ERGLMA---------------ALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQ  225 (310)
T ss_dssp             C-----CTTCCEEECCSCTTCH-HHHHHT---------------TSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCC
T ss_pred             c-----CCCCCEEECCCCCCcc-chhhhH---------------HHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCC
Confidence            2     6677777777663211 0  110               00123466677777776655432221     12466


Q ss_pred             ccEEEEeccEeeeecCCCCccCCCCCCcCCCCCCCCCeEEecCCCCCCCCCccEEEEcCCCCCCCccccCCCCccCCCCC
Q 048322          348 IKFMTISNSSLDMIGCKGMLYDSQAGSSLPKPMTTTNVLEFGKLLEPGFQILETLVIGNSEQLKPWRQGRGLSMGFQRLT  427 (498)
Q Consensus       348 L~~L~l~~~~l~~~~~~~l~~~~~~l~~lp~~l~~L~~L~i~~~~~~~lp~L~~L~l~~c~~L~~l~~l~~l~~~l~~l~  427 (498)
                      |++|++++|.+...              .|..+..          ..++++|++|+++++ .++.+      |.++.  +
T Consensus       226 L~~L~Ls~N~l~~~--------------~p~~~~~----------~~~~~~L~~L~Ls~N-~l~~l------p~~~~--~  272 (310)
T 4glp_A          226 PHSLDLSHNSLRAT--------------VNPSAPR----------CMWSSALNSLNLSFA-GLEQV------PKGLP--A  272 (310)
T ss_dssp             CSSEECTTSCCCCC--------------CCSCCSS----------CCCCTTCCCEECCSS-CCCSC------CSCCC--S
T ss_pred             CCEEECCCCCCCcc--------------chhhHHh----------ccCcCcCCEEECCCC-CCCch------hhhhc--C
Confidence            66666665522111              0111100          011245777777663 34332      55553  6


Q ss_pred             CcCeEeeecCCCCCcCCCCCccccccceeeccCc
Q 048322          428 SLQSLKIWNCPNLTLFPEVGLPSSLLDLYVNNCP  461 (498)
Q Consensus       428 ~L~~L~l~~c~~l~~lp~~~~~~sL~~L~i~~c~  461 (498)
                      +|++|++++| .++.+|....+++|+.|++++++
T Consensus       273 ~L~~L~Ls~N-~l~~~~~~~~l~~L~~L~L~~N~  305 (310)
T 4glp_A          273 KLRVLDLSSN-RLNRAPQPDELPEVDNLTLDGNP  305 (310)
T ss_dssp             CCSCEECCSC-CCCSCCCTTSCCCCSCEECSSTT
T ss_pred             CCCEEECCCC-cCCCCchhhhCCCccEEECcCCC
Confidence            8888888875 66666654445778888887764

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.27  E-value=9.5e-11  Score=108.72  Aligned_cols=147  Identities=16%  Similarity=0.182  Sum_probs=90.8

Q ss_pred             CCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCC--CCCccccceeeccccccceecCccccCCCCCCCCC
Q 048322          175 CIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPS--LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFP  252 (498)
Q Consensus       175 ~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~--i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~  252 (498)
                      +.+++++++++...+|..+.    ++|+.|++++|. +..+++  ++.+++|++|+++++ .+..++...+.     .++
T Consensus        15 ~~~~l~~~~~~l~~~p~~~~----~~l~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~-----~l~   83 (251)
T 3m19_A           15 GKKEVDCQGKSLDSVPSGIP----ADTEKLDLQSTG-LATLSDATFRGLTKLTWLNLDYN-QLQTLSAGVFD-----DLT   83 (251)
T ss_dssp             GGTEEECTTCCCSSCCSCCC----TTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTT-----TCT
T ss_pred             CCeEEecCCCCccccCCCCC----CCCCEEEccCCC-cCccCHhHhcCcccCCEEECCCC-cCCccCHhHhc-----cCC
Confidence            45677777777777776543    467788887753 444443  777788888888774 46555544332     477


Q ss_pred             CCceeeccCCCccccccccccCCccccCCCccceeeeccCCCccccCCCCcchHHHHHHhcccccccCCCCccccEEEec
Q 048322          253 SLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSYPRLCRLEVD  332 (498)
Q Consensus       253 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~L~l~  332 (498)
                      +|++|+++++ .++.+.+.....     +++|++|+++++ .++ .+|..                .+..+++|++|+++
T Consensus        84 ~L~~L~L~~n-~l~~~~~~~~~~-----l~~L~~L~L~~N-~l~-~~~~~----------------~~~~l~~L~~L~Ls  139 (251)
T 3m19_A           84 ELGTLGLANN-QLASLPLGVFDH-----LTQLDKLYLGGN-QLK-SLPSG----------------VFDRLTKLKELRLN  139 (251)
T ss_dssp             TCCEEECTTS-CCCCCCTTTTTT-----CTTCCEEECCSS-CCC-CCCTT----------------TTTTCTTCCEEECC
T ss_pred             cCCEEECCCC-cccccChhHhcc-----cCCCCEEEcCCC-cCC-CcChh----------------HhccCCcccEEECc
Confidence            7777777765 344443322222     677777877776 444 44431                34456777777777


Q ss_pred             CCCcceecC--CCCCCCccEEEEecc
Q 048322          333 ECKELVCRT--PIDSKLIKFMTISNS  356 (498)
Q Consensus       333 ~~~~~~~~~--~~~~~~L~~L~l~~~  356 (498)
                      +|....++.  ...+++|+.|++++|
T Consensus       140 ~N~l~~~~~~~~~~l~~L~~L~L~~N  165 (251)
T 3m19_A          140 TNQLQSIPAGAFDKLTNLQTLSLSTN  165 (251)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCcCCccCHHHcCcCcCCCEEECCCC
Confidence            776555443  334667777777665

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.26  E-value=1.5e-14  Score=147.03  Aligned_cols=147  Identities=19%  Similarity=0.160  Sum_probs=76.4

Q ss_pred             hcccCCcccEEEEecCCCCCCcChhhHHHhhhcCCCCCCCceEEEeecCCCCC-CccccCCCCC----CccEEeEeCCCC
Q 048322          137 LCEKLNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARF-PLWIGDPLFS----KIEFLELENCNN  211 (498)
Q Consensus       137 l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~-p~~~~~~~l~----~L~~L~l~~c~~  211 (498)
                      +..+++|+.|+++.+.-     .......+.+.+..+++|++|+++++..... +..+.. .++    +|++|++++|. 
T Consensus        24 ~~~~~~L~~L~L~~~~l-----~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~-~l~~~~~~L~~L~L~~n~-   96 (461)
T 1z7x_W           24 LPLLQQCQVVRLDDCGL-----TEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQ-GLQTPSCKIQKLSLQNCC-   96 (461)
T ss_dssp             HHHHTTCSEEEEESSCC-----CHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHH-TTCSTTCCCCEEECTTSC-
T ss_pred             HhhcCCccEEEccCCCC-----CHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHH-HHhhCCCceeEEEccCCC-
Confidence            56677888888877652     1112223445555567888888887764321 212211 233    68888888864 


Q ss_pred             CC-----CCCC-CCCccccceeeccccccceecCccccCCCCCCCCCCCceeeccCCCccccccccccCCccccCCCccc
Q 048322          212 CV-----SLPS-LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQ  285 (498)
Q Consensus       212 ~~-----~lp~-i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~  285 (498)
                      ++     .+|. +..+++|++|+++++. +...+.......-....++|++|+++++ .+........ ...+..+++|+
T Consensus        97 i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l-~~~l~~~~~L~  173 (461)
T 1z7x_W           97 LTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYC-SLSAASCEPL-ASVLRAKPDFK  173 (461)
T ss_dssp             CBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGHHHH-HHHHHHCTTCC
T ss_pred             CCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCC-CCCHHHHHHH-HHHHhhCCCCC
Confidence            33     3344 7778888888888754 4322111110000112456777777766 2222110000 00011256667


Q ss_pred             eeeeccCC
Q 048322          286 ELSVVKCP  293 (498)
Q Consensus       286 ~L~l~~c~  293 (498)
                      +|++++|.
T Consensus       174 ~L~L~~n~  181 (461)
T 1z7x_W          174 ELTVSNND  181 (461)
T ss_dssp             EEECCSSB
T ss_pred             EEECcCCC
Confidence            77766663

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.22  E-value=1e-13  Score=134.75  Aligned_cols=176  Identities=13%  Similarity=0.106  Sum_probs=118.3

Q ss_pred             CCcccEEEEecCCCCCCcChhhHHHhhhcCCCCCCCceEEEeecCCCC--CCccccCCCCCCccEEeEeCCCCCCCCCC-
Q 048322          141 LNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGAR--FPLWIGDPLFSKIEFLELENCNNCVSLPS-  217 (498)
Q Consensus       141 ~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~--~p~~~~~~~l~~L~~L~l~~c~~~~~lp~-  217 (498)
                      .+++.|++..+.-.          .....+..+++|++|+++++....  +|..+.  .+++|++|++++|......|. 
T Consensus        70 ~~l~~L~l~~n~l~----------~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~--~~~~L~~L~L~~~~l~~~~~~~  137 (336)
T 2ast_B           70 QGVIAFRCPRSFMD----------QPLAEHFSPFRVQHMDLSNSVIEVSTLHGILS--QCSKLQNLSLEGLRLSDPIVNT  137 (336)
T ss_dssp             TTCSEEECTTCEEC----------SCCCSCCCCBCCCEEECTTCEECHHHHHHHHT--TBCCCSEEECTTCBCCHHHHHH
T ss_pred             ccceEEEcCCcccc----------ccchhhccCCCCCEEEccCCCcCHHHHHHHHh--hCCCCCEEeCcCcccCHHHHHH
Confidence            68888888655310          112224457999999999987542  555555  689999999999853334444 


Q ss_pred             CCCccccceeecccccccee--cCccccCCCCCCCCCCCceeeccCCCcccccc-ccccCCccccCCC-ccceeeeccCC
Q 048322          218 LGLLSSLKHLAVKGLKKLKS--IESEVYGEGFSMPFPSLKILRFENLPEWWHWD-TDIKGNVHVDIFP-RLQELSVVKCP  293 (498)
Q Consensus       218 i~~l~~L~~L~l~~~~~l~~--i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~~~~~~l~-~L~~L~l~~c~  293 (498)
                      ++.+++|++|++++|..++.  ++..+.      .+++|++|+++++..++... +...     ..++ +|++|++++|.
T Consensus       138 l~~~~~L~~L~L~~~~~l~~~~l~~~~~------~~~~L~~L~l~~~~~l~~~~~~~~~-----~~l~~~L~~L~l~~~~  206 (336)
T 2ast_B          138 LAKNSNLVRLNLSGCSGFSEFALQTLLS------SCSRLDELNLSWCFDFTEKHVQVAV-----AHVSETITQLNLSGYR  206 (336)
T ss_dssp             HTTCTTCSEEECTTCBSCCHHHHHHHHH------HCTTCCEEECCCCTTCCHHHHHHHH-----HHSCTTCCEEECCSCG
T ss_pred             HhcCCCCCEEECCCCCCCCHHHHHHHHh------cCCCCCEEcCCCCCCcChHHHHHHH-----HhcccCCCEEEeCCCc
Confidence            78899999999999866653  333222      48999999999986665431 2211     2288 99999999985


Q ss_pred             -Ccc-ccCCCCcchHHHHHHhcccccccCCCCccccEEEecCCCcce---ecCCCCCCCccEEEEecc
Q 048322          294 -KLS-GKLPELLPSLEILVSKCEKLVVSLSSYPRLCRLEVDECKELV---CRTPIDSKLIKFMTISNS  356 (498)
Q Consensus       294 -~l~-~~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~L~l~~~~~~~---~~~~~~~~~L~~L~l~~~  356 (498)
                       .++ +.+|.                 .+..+++|++|++++|..+.   ......+++|++|++++|
T Consensus       207 ~~~~~~~l~~-----------------~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~  257 (336)
T 2ast_B          207 KNLQKSDLST-----------------LVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC  257 (336)
T ss_dssp             GGSCHHHHHH-----------------HHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred             ccCCHHHHHH-----------------HHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCC
Confidence             332 11111                 12236789999999998432   334445788888888765

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.22  E-value=1.2e-10  Score=120.41  Aligned_cols=184  Identities=17%  Similarity=0.163  Sum_probs=101.2

Q ss_pred             CCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCCCCCccccceeeccccccceecCccccCCCCCCCCCCC
Q 048322          175 CIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPSLGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSL  254 (498)
Q Consensus       175 ~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L  254 (498)
                      +|+.|++++++...+|..+    +++|++|+|++| .++.+|  +.+++|++|+++++ .++.+|. +.        .+|
T Consensus        60 ~L~~L~Ls~n~L~~lp~~l----~~~L~~L~Ls~N-~l~~ip--~~l~~L~~L~Ls~N-~l~~ip~-l~--------~~L  122 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPDNL----PPQITVLEITQN-ALISLP--ELPASLEYLDACDN-RLSTLPE-LP--------ASL  122 (571)
T ss_dssp             TCSEEECCSSCCSCCCSCC----CTTCSEEECCSS-CCSCCC--CCCTTCCEEECCSS-CCSCCCC-CC--------TTC
T ss_pred             CccEEEeCCCCCCccCHhH----cCCCCEEECcCC-CCcccc--cccCCCCEEEccCC-CCCCcch-hh--------cCC
Confidence            5666666666665566543    256677777664 455666  45666777777664 4555554 21        166


Q ss_pred             ceeeccCCCccccccccccCCccccCCCccceeeeccCCCccccCCCCcchHHHHHHhcccccccCCCCccccEEEecCC
Q 048322          255 KILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSYPRLCRLEVDEC  334 (498)
Q Consensus       255 ~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~L~l~~~  334 (498)
                      +.|+++++ .++.+..    .     +++|+.|++++| .++ .+|.                    .+++|++|++++|
T Consensus       123 ~~L~Ls~N-~l~~lp~----~-----l~~L~~L~Ls~N-~l~-~lp~--------------------~l~~L~~L~Ls~N  170 (571)
T 3cvr_A          123 KHLDVDNN-QLTMLPE----L-----PALLEYINADNN-QLT-MLPE--------------------LPTSLEVLSVRNN  170 (571)
T ss_dssp             CEEECCSS-CCSCCCC----C-----CTTCCEEECCSS-CCS-CCCC--------------------CCTTCCEEECCSS
T ss_pred             CEEECCCC-cCCCCCC----c-----CccccEEeCCCC-ccC-cCCC--------------------cCCCcCEEECCCC
Confidence            66666655 3333222    1     677777777766 343 3432                    2456777777777


Q ss_pred             CcceecCCCCCCCccEEEEeccEeeeecCCCCccCCCCCCcCCCCCC-CCCeEEecCCCCCCCCCccEEEEcCCCCCCCc
Q 048322          335 KELVCRTPIDSKLIKFMTISNSSLDMIGCKGMLYDSQAGSSLPKPMT-TTNVLEFGKLLEPGFQILETLVIGNSEQLKPW  413 (498)
Q Consensus       335 ~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~l~~lp~~l~-~L~~L~i~~~~~~~lp~L~~L~l~~c~~L~~l  413 (498)
                      ....++. .. ++|+.|++++|               .++.+|. ++ +|         ....+.|+.|+++++ .++. 
T Consensus       171 ~L~~lp~-l~-~~L~~L~Ls~N---------------~L~~lp~-~~~~L---------~~~~~~L~~L~Ls~N-~l~~-  221 (571)
T 3cvr_A          171 QLTFLPE-LP-ESLEALDVSTN---------------LLESLPA-VPVRN---------HHSEETEIFFRCREN-RITH-  221 (571)
T ss_dssp             CCSCCCC-CC-TTCCEEECCSS---------------CCSSCCC-CC-----------------CCEEEECCSS-CCCC-
T ss_pred             CCCCcch-hh-CCCCEEECcCC---------------CCCchhh-HHHhh---------hcccccceEEecCCC-ccee-
Confidence            6555554 22 67777777665               3334443 21 12         011122366666553 3433 


Q ss_pred             cccCCCCccCCCCCCcCeEeeecCCCCC
Q 048322          414 RQGRGLSMGFQRLTSLQSLKIWNCPNLT  441 (498)
Q Consensus       414 ~~l~~l~~~l~~l~~L~~L~l~~c~~l~  441 (498)
                           +|.++..+++|+.|++++|+.-.
T Consensus       222 -----lp~~l~~l~~L~~L~L~~N~l~~  244 (571)
T 3cvr_A          222 -----IPENILSLDPTCTIILEDNPLSS  244 (571)
T ss_dssp             -----CCGGGGGSCTTEEEECCSSSCCH
T ss_pred             -----cCHHHhcCCCCCEEEeeCCcCCC
Confidence                 26666667777777777764433

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.22  E-value=2.5e-13  Score=142.62  Aligned_cols=76  Identities=16%  Similarity=0.143  Sum_probs=48.6

Q ss_pred             CCCCCeEEecCC-------CCC-CCCCccEEEEcCCCCCCCccccCCCCccC-CCCCCcCeEeeecCCCCCcCCC--C-C
Q 048322          380 MTTTNVLEFGKL-------LEP-GFQILETLVIGNSEQLKPWRQGRGLSMGF-QRLTSLQSLKIWNCPNLTLFPE--V-G  447 (498)
Q Consensus       380 l~~L~~L~i~~~-------~~~-~lp~L~~L~l~~c~~L~~l~~l~~l~~~l-~~l~~L~~L~l~~c~~l~~lp~--~-~  447 (498)
                      +++|+.|+++++       .+. .+++|+.|++++|. ++.. .    +..+ ..+++|++|++++|+. +....  . .
T Consensus       431 ~~~L~~L~L~~~l~~~~~~~l~~~~~~L~~L~L~~~~-i~~~-~----~~~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~  503 (594)
T 2p1m_B          431 CKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAG-DSDL-G----MHHVLSGCDSLRKLEIRDCPF-GDKALLANAS  503 (594)
T ss_dssp             CTTCCEEECCSSCCHHHHHHHHHHCTTCCEEEEESCC-SSHH-H----HHHHHHHCTTCCEEEEESCSC-CHHHHHHTGG
T ss_pred             CCCccEEeecCcccHHHHHHHHHhchhccEeeccCCC-CcHH-H----HHHHHhcCCCcCEEECcCCCC-cHHHHHHHHH
Confidence            367888888764       111 26778888888865 3210 0    1112 4578999999999875 32111  1 2


Q ss_pred             ccccccceeeccCch
Q 048322          448 LPSSLLDLYVNNCPR  462 (498)
Q Consensus       448 ~~~sL~~L~i~~c~~  462 (498)
                      ..++|+.|++++|+.
T Consensus       504 ~l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          504 KLETMRSLWMSSCSV  518 (594)
T ss_dssp             GGGGSSEEEEESSCC
T ss_pred             hCCCCCEEeeeCCCC
Confidence            247899999999975

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.20  E-value=1.8e-13  Score=143.75  Aligned_cols=36  Identities=17%  Similarity=0.114  Sum_probs=22.1

Q ss_pred             CCCcCeEeeecCCCCCcCCCC---CccccccceeeccCch
Q 048322          426 LTSLQSLKIWNCPNLTLFPEV---GLPSSLLDLYVNNCPR  462 (498)
Q Consensus       426 l~~L~~L~l~~c~~l~~lp~~---~~~~sL~~L~i~~c~~  462 (498)
                      +++|++|++++|. ++.....   ...++|++|++++|+.
T Consensus       455 ~~~L~~L~L~~~~-i~~~~~~~l~~~~~~L~~L~L~~n~~  493 (594)
T 2p1m_B          455 AKKMEMLSVAFAG-DSDLGMHHVLSGCDSLRKLEIRDCPF  493 (594)
T ss_dssp             CTTCCEEEEESCC-SSHHHHHHHHHHCTTCCEEEEESCSC
T ss_pred             chhccEeeccCCC-CcHHHHHHHHhcCCCcCEEECcCCCC
Confidence            5677777777764 3221100   1147899999999874

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.19  E-value=2.5e-10  Score=105.85  Aligned_cols=154  Identities=16%  Similarity=0.190  Sum_probs=113.9

Q ss_pred             CCCceEEEeecCCCCCCc-cccCCCCCCccEEeEeCCCCCCCCCC--CCCccccceeeccccccceecCccccCCCCCCC
Q 048322          174 KCIKKVAIRNYGGARFPL-WIGDPLFSKIEFLELENCNNCVSLPS--LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMP  250 (498)
Q Consensus       174 ~~L~~L~l~~~~~~~~p~-~~~~~~l~~L~~L~l~~c~~~~~lp~--i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~  250 (498)
                      ++++.|+++++....++. .+.  .+++|++|++++| .+..+++  ++.+++|++|+++++ .++.++...++     .
T Consensus        35 ~~l~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~-----~  105 (251)
T 3m19_A           35 ADTEKLDLQSTGLATLSDATFR--GLTKLTWLNLDYN-QLQTLSAGVFDDLTELGTLGLANN-QLASLPLGVFD-----H  105 (251)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTT--TCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTT-----T
T ss_pred             CCCCEEEccCCCcCccCHhHhc--CcccCCEEECCCC-cCCccCHhHhccCCcCCEEECCCC-cccccChhHhc-----c
Confidence            689999999998777654 344  5899999999996 5555654  788999999999985 57777765554     5


Q ss_pred             CCCCceeeccCCCccccccccccCCccccCCCccceeeeccCCCccccCCCCcchHHHHHHhcccccccCCCCccccEEE
Q 048322          251 FPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSYPRLCRLE  330 (498)
Q Consensus       251 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~L~  330 (498)
                      +++|++|+++++ .++.+.+.....     +++|++|++++| .++ .+|..                .+..+++|++|+
T Consensus       106 l~~L~~L~L~~N-~l~~~~~~~~~~-----l~~L~~L~Ls~N-~l~-~~~~~----------------~~~~l~~L~~L~  161 (251)
T 3m19_A          106 LTQLDKLYLGGN-QLKSLPSGVFDR-----LTKLKELRLNTN-QLQ-SIPAG----------------AFDKLTNLQTLS  161 (251)
T ss_dssp             CTTCCEEECCSS-CCCCCCTTTTTT-----CTTCCEEECCSS-CCC-CCCTT----------------TTTTCTTCCEEE
T ss_pred             cCCCCEEEcCCC-cCCCcChhHhcc-----CCcccEEECcCC-cCC-ccCHH----------------HcCcCcCCCEEE
Confidence            899999999887 555554433233     899999999988 565 45431                456688999999


Q ss_pred             ecCCCcceecC--CCCCCCccEEEEeccEeee
Q 048322          331 VDECKELVCRT--PIDSKLIKFMTISNSSLDM  360 (498)
Q Consensus       331 l~~~~~~~~~~--~~~~~~L~~L~l~~~~l~~  360 (498)
                      +++|....++.  ...+++|+.|++++|.+..
T Consensus       162 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  193 (251)
T 3m19_A          162 LSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC  193 (251)
T ss_dssp             CCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred             CCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence            99997766543  3347788888888775443

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.18  E-value=1.3e-10  Score=110.22  Aligned_cols=58  Identities=19%  Similarity=0.179  Sum_probs=33.9

Q ss_pred             CCCCCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCCCCCccccceeecccc
Q 048322          171 QPHKCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPSLGLLSSLKHLAVKGL  232 (498)
Q Consensus       171 ~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~i~~l~~L~~L~l~~~  232 (498)
                      ..+++|++|+++++....++. +.  .+++|++|++++| .+..+|.++.+++|++|++++|
T Consensus        65 ~~l~~L~~L~L~~n~l~~~~~-l~--~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~L~~n  122 (291)
T 1h6t_A           65 QYLPNVTKLFLNGNKLTDIKP-LA--NLKNLGWLFLDEN-KVKDLSSLKDLKKLKSLSLEHN  122 (291)
T ss_dssp             GGCTTCCEEECCSSCCCCCGG-GT--TCTTCCEEECCSS-CCCCGGGGTTCTTCCEEECTTS
T ss_pred             hcCCCCCEEEccCCccCCCcc-cc--cCCCCCEEECCCC-cCCCChhhccCCCCCEEECCCC
Confidence            344666666666666555554 33  4666666666664 3455555666666666666654

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.18  E-value=6.5e-11  Score=112.41  Aligned_cols=165  Identities=18%  Similarity=0.178  Sum_probs=121.6

Q ss_pred             CCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCCCCCccccceeeccccccceecCccccCCCCCCCCCC
Q 048322          174 KCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPSLGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPS  253 (498)
Q Consensus       174 ~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~  253 (498)
                      ++|+.|+++++....+|. +.  .+++|++|++++| .+..+++++.+++|++|+++++ .++.++. +      ..+++
T Consensus        46 ~~L~~L~l~~~~i~~~~~-~~--~l~~L~~L~L~~n-~l~~~~~l~~l~~L~~L~l~~n-~l~~~~~-l------~~l~~  113 (291)
T 1h6t_A           46 NSIDQIIANNSDIKSVQG-IQ--YLPNVTKLFLNGN-KLTDIKPLANLKNLGWLFLDEN-KVKDLSS-L------KDLKK  113 (291)
T ss_dssp             HTCCEEECTTSCCCCCTT-GG--GCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSS-CCCCGGG-G------TTCTT
T ss_pred             CcccEEEccCCCcccChh-Hh--cCCCCCEEEccCC-ccCCCcccccCCCCCEEECCCC-cCCCChh-h------ccCCC
Confidence            678888888887777765 44  5899999999996 5677777999999999999986 4666553 2      35899


Q ss_pred             CceeeccCCCccccccccccCCccccCCCccceeeeccCCCccccCCCCcchHHHHHHhcccccccCCCCccccEEEecC
Q 048322          254 LKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSYPRLCRLEVDE  333 (498)
Q Consensus       254 L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~L~l~~  333 (498)
                      |++|+++++ .++.+.       .+..+++|+.|++++| .++ .++                  .+..+++|+.|++++
T Consensus       114 L~~L~L~~n-~i~~~~-------~l~~l~~L~~L~l~~n-~l~-~~~------------------~l~~l~~L~~L~L~~  165 (291)
T 1h6t_A          114 LKSLSLEHN-GISDIN-------GLVHLPQLESLYLGNN-KIT-DIT------------------VLSRLTKLDTLSLED  165 (291)
T ss_dssp             CCEEECTTS-CCCCCG-------GGGGCTTCCEEECCSS-CCC-CCG------------------GGGGCTTCSEEECCS
T ss_pred             CCEEECCCC-cCCCCh-------hhcCCCCCCEEEccCC-cCC-cch------------------hhccCCCCCEEEccC
Confidence            999999887 444432       1233899999999988 443 232                  345578899999999


Q ss_pred             CCcceecCCCCCCCccEEEEeccEeeeecCCCCccCCCCCCcCCCCCCCCCeEEecCC
Q 048322          334 CKELVCRTPIDSKLIKFMTISNSSLDMIGCKGMLYDSQAGSSLPKPMTTTNVLEFGKL  391 (498)
Q Consensus       334 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~l~~lp~~l~~L~~L~i~~~  391 (498)
                      |.....+....+++|+.|++++|.+..            +..+ ..+++|+.|++++|
T Consensus       166 N~l~~~~~l~~l~~L~~L~L~~N~i~~------------l~~l-~~l~~L~~L~l~~n  210 (291)
T 1h6t_A          166 NQISDIVPLAGLTKLQNLYLSKNHISD------------LRAL-AGLKNLDVLELFSQ  210 (291)
T ss_dssp             SCCCCCGGGTTCTTCCEEECCSSCCCB------------CGGG-TTCTTCSEEEEEEE
T ss_pred             CccccchhhcCCCccCEEECCCCcCCC------------Chhh-ccCCCCCEEECcCC
Confidence            887766666678999999998873321            1111 34588999999988

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.17  E-value=5.1e-13  Score=140.21  Aligned_cols=270  Identities=13%  Similarity=0.114  Sum_probs=160.7

Q ss_pred             hHHHhhcccCCcccEEEEecCCCCCCcChhhHHHhhhcCCCCCCCceEEEeecCCC----CCCccccCCCCCCccEEeEe
Q 048322          132 AREAALCEKLNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGA----RFPLWIGDPLFSKIEFLELE  207 (498)
Q Consensus       132 ~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~----~~p~~~~~~~l~~L~~L~l~  207 (498)
                      ....-+.++++|+.|++..+..      .    .+...+...++|+.|.+.++.+.    ..+..+.  .+++|+.|.++
T Consensus       211 ~l~~~~~~~~~L~~L~L~~~~~------~----~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~--~~~~L~~L~l~  278 (592)
T 3ogk_B          211 DLETIARNCRSLVSVKVGDFEI------L----ELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLV--FPRKLCRLGLS  278 (592)
T ss_dssp             HHHHHHHHCTTCCEEECSSCBG------G----GGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCC--CCTTCCEEEET
T ss_pred             HHHHHHhhCCCCcEEeccCccH------H----HHHHHHhhhhHHHhhcccccccccchHHHHHHhh--ccccccccCcc
Confidence            3444556789999999977531      1    12333444589999999875433    2223333  57889999998


Q ss_pred             CCCCCCCCCC-CCCccccceeeccccccceecCc-cccCCCCCCCCCCCceeeccCCCccccccccccCCccccCCCccc
Q 048322          208 NCNNCVSLPS-LGLLSSLKHLAVKGLKKLKSIES-EVYGEGFSMPFPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQ  285 (498)
Q Consensus       208 ~c~~~~~lp~-i~~l~~L~~L~l~~~~~l~~i~~-~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~  285 (498)
                      ++ ....+|. +..+++|++|++++|. +..... .+.     ..+++|+.|++.++..-..+ .....     .+++|+
T Consensus       279 ~~-~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~-----~~~~~L~~L~L~~~~~~~~l-~~~~~-----~~~~L~  345 (592)
T 3ogk_B          279 YM-GPNEMPILFPFAAQIRKLDLLYAL-LETEDHCTLI-----QKCPNLEVLETRNVIGDRGL-EVLAQ-----YCKQLK  345 (592)
T ss_dssp             TC-CTTTGGGGGGGGGGCCEEEETTCC-CCHHHHHHHH-----TTCTTCCEEEEEGGGHHHHH-HHHHH-----HCTTCC
T ss_pred             cc-chhHHHHHHhhcCCCcEEecCCCc-CCHHHHHHHH-----HhCcCCCEEeccCccCHHHH-HHHHH-----hCCCCC
Confidence            74 4556666 6778999999999876 432211 111     35889999988733111111 11111     278899


Q ss_pred             eeeecc----------CCCcccc-C---CCCcchHHHH-HHhcccccc----cCCC-CccccEEEecCCC---cceec--
Q 048322          286 ELSVVK----------CPKLSGK-L---PELLPSLEIL-VSKCEKLVV----SLSS-YPRLCRLEVDECK---ELVCR--  340 (498)
Q Consensus       286 ~L~l~~----------c~~l~~~-l---p~~l~~L~~L-i~~~~~l~~----~~~~-l~~L~~L~l~~~~---~~~~~--  340 (498)
                      +|++.+          |..+++. +   ...+++|++| + .|+.+..    .+.. +++|++|++.++.   .++-.  
T Consensus       346 ~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l-~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~  424 (592)
T 3ogk_B          346 RLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAV-YVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPL  424 (592)
T ss_dssp             EEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEE-EESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCC
T ss_pred             EEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEe-ecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchH
Confidence            999985          6554311 1   1123444444 4 3333332    1222 6788888887432   22210  


Q ss_pred             -----C-CCCCCCccEEEEeccE--eeeecCCCCccCCCCCCcCCCCCCCCCeEEecCCC---------CCCCCCccEEE
Q 048322          341 -----T-PIDSKLIKFMTISNSS--LDMIGCKGMLYDSQAGSSLPKPMTTTNVLEFGKLL---------EPGFQILETLV  403 (498)
Q Consensus       341 -----~-~~~~~~L~~L~l~~~~--l~~~~~~~l~~~~~~l~~lp~~l~~L~~L~i~~~~---------~~~lp~L~~L~  403 (498)
                           . ...+++|++|++++|.  +...          .+..+...+++|+.|++++|.         ..++++|++|+
T Consensus       425 ~~~~~~~~~~~~~L~~L~L~~~~~~l~~~----------~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~  494 (592)
T 3ogk_B          425 DNGVRSLLIGCKKLRRFAFYLRQGGLTDL----------GLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLE  494 (592)
T ss_dssp             HHHHHHHHHHCTTCCEEEEECCGGGCCHH----------HHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEE
T ss_pred             HHHHHHHHHhCCCCCEEEEecCCCCccHH----------HHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeee
Confidence                 0 1127889999986541  1100          011122335789999999982         35689999999


Q ss_pred             EcCCCCCCCccccCCCCccCCCCCCcCeEeeecCCCCCcC
Q 048322          404 IGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPNLTLF  443 (498)
Q Consensus       404 l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l  443 (498)
                      |++|+ ++.-    .++.....+++|++|++++|+ ++..
T Consensus       495 l~~n~-l~~~----~~~~~~~~l~~L~~L~ls~n~-it~~  528 (592)
T 3ogk_B          495 MRGCC-FSER----AIAAAVTKLPSLRYLWVQGYR-ASMT  528 (592)
T ss_dssp             EESCC-CBHH----HHHHHHHHCSSCCEEEEESCB-CCTT
T ss_pred             ccCCC-CcHH----HHHHHHHhcCccCeeECcCCc-CCHH
Confidence            99998 5421    013344578999999999997 5443

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.15  E-value=1.8e-10  Score=120.12  Aligned_cols=172  Identities=15%  Similarity=0.141  Sum_probs=119.7

Q ss_pred             cccCCcccEEEEecCCCCCCcChhhHHHhhhcCCCCCCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCC
Q 048322          138 CEKLNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPS  217 (498)
Q Consensus       138 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~  217 (498)
                      ..+.+|+.|+++.+.- ..          ++.+..+++|+.|+++++....+|. +.  .+++|+.|+|++| .+..+|.
T Consensus        40 ~~L~~L~~L~l~~n~i-~~----------l~~l~~l~~L~~L~Ls~N~l~~~~~-l~--~l~~L~~L~Ls~N-~l~~l~~  104 (605)
T 1m9s_A           40 NELNSIDQIIANNSDI-KS----------VQGIQYLPNVTKLFLNGNKLTDIKP-LT--NLKNLGWLFLDEN-KIKDLSS  104 (605)
T ss_dssp             HHHTTCCCCBCTTCCC-CC----------CTTGGGCTTCCEEECTTSCCCCCGG-GG--GCTTCCEEECCSS-CCCCCTT
T ss_pred             hcCCCCCEEECcCCCC-CC----------ChHHccCCCCCEEEeeCCCCCCChh-hc--cCCCCCEEECcCC-CCCCChh
Confidence            4567788888865541 10          1235567889999999888777776 44  5888999999886 5677788


Q ss_pred             CCCccccceeeccccccceecCccccCCCCCCCCCCCceeeccCCCccccccccccCCccccCCCccceeeeccCCCccc
Q 048322          218 LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSG  297 (498)
Q Consensus       218 i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~  297 (498)
                      ++.+++|+.|++++|. +..++.       +..+++|+.|+++++ .+..+.       .+..+++|+.|+|++| .+. 
T Consensus       105 l~~l~~L~~L~Ls~N~-l~~l~~-------l~~l~~L~~L~Ls~N-~l~~l~-------~l~~l~~L~~L~Ls~N-~l~-  166 (605)
T 1m9s_A          105 LKDLKKLKSLSLEHNG-ISDING-------LVHLPQLESLYLGNN-KITDIT-------VLSRLTKLDTLSLEDN-QIS-  166 (605)
T ss_dssp             STTCTTCCEEECTTSC-CCCCGG-------GGGCTTCSEEECCSS-CCCCCG-------GGGSCTTCSEEECCSS-CCC-
T ss_pred             hccCCCCCEEEecCCC-CCCCcc-------ccCCCccCEEECCCC-ccCCch-------hhcccCCCCEEECcCC-cCC-
Confidence            8888999999998863 555432       234888888888876 344331       1233788888888887 343 


Q ss_pred             cCCCCcchHHHHHHhcccccccCCCCccccEEEecCCCcceecCCCCCCCccEEEEeccEeee
Q 048322          298 KLPELLPSLEILVSKCEKLVVSLSSYPRLCRLEVDECKELVCRTPIDSKLIKFMTISNSSLDM  360 (498)
Q Consensus       298 ~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~  360 (498)
                      .++                  .+..+++|+.|++++|....++....+++|+.|++++|.+..
T Consensus       167 ~~~------------------~l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L~~N~l~~  211 (605)
T 1m9s_A          167 DIV------------------PLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLN  211 (605)
T ss_dssp             CCG------------------GGTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEECCSEEEEC
T ss_pred             Cch------------------hhccCCCCCEEECcCCCCCCChHHccCCCCCEEEccCCcCcC
Confidence            222                  134577888888888877666666678888888888876544

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.15  E-value=2.3e-13  Score=138.33  Aligned_cols=297  Identities=18%  Similarity=0.177  Sum_probs=157.8

Q ss_pred             CCcccEEEEecCCCCCCcChhhHHHhhhcCCCCCCCceEEEeecCCC-----CCCccccCCCCCCccEEeEeCCCCCCCC
Q 048322          141 LNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGA-----RFPLWIGDPLFSKIEFLELENCNNCVSL  215 (498)
Q Consensus       141 ~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~-----~~p~~~~~~~l~~L~~L~l~~c~~~~~l  215 (498)
                      ++|+.|+|+++.-     .......++   ..+++|++|+++++...     .+|..+.  .+++|++|++++|. +...
T Consensus         3 ~~l~~L~Ls~~~l-----~~~~~~~~~---~~~~~L~~L~L~~~~l~~~~~~~l~~~l~--~~~~L~~L~Ls~n~-l~~~   71 (461)
T 1z7x_W            3 LDIQSLDIQCEEL-----SDARWAELL---PLLQQCQVVRLDDCGLTEARCKDISSALR--VNPALAELNLRSNE-LGDV   71 (461)
T ss_dssp             EEEEEEEEESCCC-----CHHHHHHHH---HHHTTCSEEEEESSCCCHHHHHHHHHHHH--TCTTCCEEECTTCC-CHHH
T ss_pred             ccceehhhhhccc-----CchhHHHHH---hhcCCccEEEccCCCCCHHHHHHHHHHHH--hCCCcCEEeCCCCc-CChH
Confidence            4678899987652     111122223   33489999999999865     3455555  57999999999964 3321


Q ss_pred             -C-CC-CCcc----ccceeeccccccceecCccccCCCCCCCCCCCceeeccCCCccccccccccCCccccCCCccceee
Q 048322          216 -P-SL-GLLS----SLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELS  288 (498)
Q Consensus       216 -p-~i-~~l~----~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~  288 (498)
                       + .+ ..++    +|++|++++|. +...+..... ..+..+++|++|+++++. +...........-....++|++|+
T Consensus        72 ~~~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~-~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~  148 (461)
T 1z7x_W           72 GVHCVLQGLQTPSCKIQKLSLQNCC-LTGAGCGVLS-STLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQ  148 (461)
T ss_dssp             HHHHHHHTTCSTTCCCCEEECTTSC-CBGGGHHHHH-HHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred             HHHHHHHHHhhCCCceeEEEccCCC-CCHHHHHHHH-HHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEE
Confidence             1 11 2233    79999999974 4432100000 112358999999999874 432211000000001156899999


Q ss_pred             eccCCCcccc----CCCC---cchHHHH-HHhcccccc---cCC-----CCccccEEEecCCCccee-----c-CCCCCC
Q 048322          289 VVKCPKLSGK----LPEL---LPSLEIL-VSKCEKLVV---SLS-----SYPRLCRLEVDECKELVC-----R-TPIDSK  346 (498)
Q Consensus       289 l~~c~~l~~~----lp~~---l~~L~~L-i~~~~~l~~---~~~-----~l~~L~~L~l~~~~~~~~-----~-~~~~~~  346 (498)
                      +++| .+++.    ++..   +++|+.| +.+|.--..   .+.     ..++|++|++++|.....     + ....++
T Consensus       149 L~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~  227 (461)
T 1z7x_W          149 LEYC-SLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKA  227 (461)
T ss_dssp             CTTS-CCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCT
T ss_pred             CCCC-CCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCC
Confidence            9998 44321    1111   1233333 333321000   011     134777777777754331     1 112357


Q ss_pred             CccEEEEeccEeeeecCCCCccCCCCCCcCCCCCCCCCeEEecCCCCC------------CCCCccEEEEcCCCCCCCcc
Q 048322          347 LIKFMTISNSSLDMIGCKGMLYDSQAGSSLPKPMTTTNVLEFGKLLEP------------GFQILETLVIGNSEQLKPWR  414 (498)
Q Consensus       347 ~L~~L~l~~~~l~~~~~~~l~~~~~~l~~lp~~l~~L~~L~i~~~~~~------------~lp~L~~L~l~~c~~L~~l~  414 (498)
                      +|++|++++|.+...+...+.      ..+....++|+.|++++|.+.            .+++|++|+++++. ++.. 
T Consensus       228 ~L~~L~Ls~n~l~~~~~~~l~------~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~-  299 (461)
T 1z7x_W          228 SLRELALGSNKLGDVGMAELC------PGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE-LGDE-  299 (461)
T ss_dssp             TCCEEECCSSBCHHHHHHHHH------HHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCC-CHHH-
T ss_pred             CccEEeccCCcCChHHHHHHH------HHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCC-CchH-
Confidence            777777776643221110000      001123467888888888322            26778888888763 3210 


Q ss_pred             ccCCCCccC-CCCCCcCeEeeecCCCCCcC-----CCC-CccccccceeeccCc
Q 048322          415 QGRGLSMGF-QRLTSLQSLKIWNCPNLTLF-----PEV-GLPSSLLDLYVNNCP  461 (498)
Q Consensus       415 ~l~~l~~~l-~~l~~L~~L~l~~c~~l~~l-----p~~-~~~~sL~~L~i~~c~  461 (498)
                      ....+...+ ...++|++|++++|. ++..     |.. ...++|++|++++|.
T Consensus       300 ~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~  352 (461)
T 1z7x_W          300 GARLLCETLLEPGCQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNNR  352 (461)
T ss_dssp             HHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSSB
T ss_pred             HHHHHHHHhccCCccceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCCc
Confidence            000011221 133689999999874 4432     111 123789999999884

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.12  E-value=8.2e-13  Score=131.01  Aligned_cols=104  Identities=15%  Similarity=0.112  Sum_probs=61.8

Q ss_pred             CccccEEEecCCCcce------ec-CCCCCCCccEEEEeccEeeeecCCCCccCCCCCCcCC---CCCCCCCeEEecCCC
Q 048322          323 YPRLCRLEVDECKELV------CR-TPIDSKLIKFMTISNSSLDMIGCKGMLYDSQAGSSLP---KPMTTTNVLEFGKLL  392 (498)
Q Consensus       323 l~~L~~L~l~~~~~~~------~~-~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~l~~lp---~~l~~L~~L~i~~~~  392 (498)
                      +++|++|++++|....      .+ ....+++|+.|++++|.+...++          ..+|   ..+++|+.|++++|.
T Consensus       186 ~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~----------~~l~~~l~~~~~L~~L~L~~n~  255 (386)
T 2ca6_A          186 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGS----------SALAIALKSWPNLRELGLNDCL  255 (386)
T ss_dssp             CTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHH----------HHHHHHGGGCTTCCEEECTTCC
T ss_pred             CCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHH----------HHHHHHHccCCCcCEEECCCCC
Confidence            4577888888876541      22 34457788888887764321100          1122   233678888888872


Q ss_pred             C--------------CCCCCccEEEEcCCCCCCCccccCCCCccC-CCCCCcCeEeeecCC
Q 048322          393 E--------------PGFQILETLVIGNSEQLKPWRQGRGLSMGF-QRLTSLQSLKIWNCP  438 (498)
Q Consensus       393 ~--------------~~lp~L~~L~l~~c~~L~~l~~l~~l~~~l-~~l~~L~~L~l~~c~  438 (498)
                      +              +.+++|+.|++++|. ++. ..+..+|..+ .++++|++|++++|+
T Consensus       256 i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~-i~~-~g~~~l~~~l~~~l~~L~~L~l~~N~  314 (386)
T 2ca6_A          256 LSARGAAAVVDAFSKLENIGLQTLRLQYNE-IEL-DAVRTLKTVIDEKMPDLLFLELNGNR  314 (386)
T ss_dssp             CCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBH-HHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred             CchhhHHHHHHHHhhccCCCeEEEECcCCc-CCH-HHHHHHHHHHHhcCCCceEEEccCCc
Confidence            1              337778888888854 332 0000125555 457888888888864

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.11  E-value=2.2e-10  Score=119.53  Aligned_cols=125  Identities=18%  Similarity=0.131  Sum_probs=66.2

Q ss_pred             hcccCCcccEEEEecCCCCCCcChhhHHHhhhcCCCCCCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCC
Q 048322          137 LCEKLNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLP  216 (498)
Q Consensus       137 l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp  216 (498)
                      +..+.+|+.|+|+.+.-..          + ..+..+++|+.|+++++....+| .+.  .+++|+.|+|++| .+..+|
T Consensus        61 l~~l~~L~~L~Ls~N~l~~----------~-~~l~~l~~L~~L~Ls~N~l~~l~-~l~--~l~~L~~L~Ls~N-~l~~l~  125 (605)
T 1m9s_A           61 IQYLPNVTKLFLNGNKLTD----------I-KPLTNLKNLGWLFLDENKIKDLS-SLK--DLKKLKSLSLEHN-GISDIN  125 (605)
T ss_dssp             GGGCTTCCEEECTTSCCCC----------C-GGGGGCTTCCEEECCSSCCCCCT-TST--TCTTCCEEECTTS-CCCCCG
T ss_pred             HccCCCCCEEEeeCCCCCC----------C-hhhccCCCCCEEECcCCCCCCCh-hhc--cCCCCCEEEecCC-CCCCCc
Confidence            4556666666665553100          0 01344466666666666655554 233  3666666666664 344555


Q ss_pred             CCCCccccceeeccccccceecCccccCCCCCCCCCCCceeeccCCCccccccccccCCccccCCCccceeeeccC
Q 048322          217 SLGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKC  292 (498)
Q Consensus       217 ~i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c  292 (498)
                      .++.+++|+.|+|++| .+..++ .      +..+++|+.|+++++ .+....+       +..+++|+.|+|++|
T Consensus       126 ~l~~l~~L~~L~Ls~N-~l~~l~-~------l~~l~~L~~L~Ls~N-~l~~~~~-------l~~l~~L~~L~Ls~N  185 (605)
T 1m9s_A          126 GLVHLPQLESLYLGNN-KITDIT-V------LSRLTKLDTLSLEDN-QISDIVP-------LAGLTKLQNLYLSKN  185 (605)
T ss_dssp             GGGGCTTCSEEECCSS-CCCCCG-G------GGSCTTCSEEECCSS-CCCCCGG-------GTTCTTCCEEECCSS
T ss_pred             cccCCCccCEEECCCC-ccCCch-h------hcccCCCCEEECcCC-cCCCchh-------hccCCCCCEEECcCC
Confidence            5666666666666664 344431 1      123666666666655 3333222       122666666666665

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.10  E-value=1.5e-09  Score=112.09  Aligned_cols=175  Identities=19%  Similarity=0.179  Sum_probs=103.8

Q ss_pred             CCccEEeEeCCCCCCCCCC-CCCccccceeeccccccceecCccccCCCCCCCCCCCceeeccCCCccccccccccCCcc
Q 048322          199 SKIEFLELENCNNCVSLPS-LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFENLPEWWHWDTDIKGNVH  277 (498)
Q Consensus       199 ~~L~~L~l~~c~~~~~lp~-i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~  277 (498)
                      .+|+.|++++| .++.+|. +  +++|++|+++++ .++.+| .        .+++|+.|+++++ .++.+..  .    
T Consensus        59 ~~L~~L~Ls~n-~L~~lp~~l--~~~L~~L~Ls~N-~l~~ip-~--------~l~~L~~L~Ls~N-~l~~ip~--l----  118 (571)
T 3cvr_A           59 NQFSELQLNRL-NLSSLPDNL--PPQITVLEITQN-ALISLP-E--------LPASLEYLDACDN-RLSTLPE--L----  118 (571)
T ss_dssp             TTCSEEECCSS-CCSCCCSCC--CTTCSEEECCSS-CCSCCC-C--------CCTTCCEEECCSS-CCSCCCC--C----
T ss_pred             CCccEEEeCCC-CCCccCHhH--cCCCCEEECcCC-CCcccc-c--------ccCCCCEEEccCC-CCCCcch--h----
Confidence            37889999886 5667886 5  378899988885 466665 1        2567777777665 3333221  0    


Q ss_pred             ccCCCccceeeeccCCCccccCCCCcchHHHHHHhcccccccCCCCccccEEEecCCCcceecCCCCCCCccEEEEeccE
Q 048322          278 VDIFPRLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSYPRLCRLEVDECKELVCRTPIDSKLIKFMTISNSS  357 (498)
Q Consensus       278 ~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~  357 (498)
                         ..+|+.|++++| .++ .+|.                    .+++|+.|++++|....++.  .+++|+.|++++| 
T Consensus       119 ---~~~L~~L~Ls~N-~l~-~lp~--------------------~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N-  170 (571)
T 3cvr_A          119 ---PASLKHLDVDNN-QLT-MLPE--------------------LPALLEYINADNNQLTMLPE--LPTSLEVLSVRNN-  170 (571)
T ss_dssp             ---CTTCCEEECCSS-CCS-CCCC--------------------CCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSS-
T ss_pred             ---hcCCCEEECCCC-cCC-CCCC--------------------cCccccEEeCCCCccCcCCC--cCCCcCEEECCCC-
Confidence               126666666665 343 2331                    24556666666655444333  3455555555544 


Q ss_pred             eeeecCCCCccCCCCCCcCCCCCCCCCeEEecCCCCCCCCCccEEEEcCCCCCCCccccCCCCccCCCCCCc-------C
Q 048322          358 LDMIGCKGMLYDSQAGSSLPKPMTTTNVLEFGKLLEPGFQILETLVIGNSEQLKPWRQGRGLSMGFQRLTSL-------Q  430 (498)
Q Consensus       358 l~~~~~~~l~~~~~~l~~lp~~l~~L~~L~i~~~~~~~lp~L~~L~l~~c~~L~~l~~l~~l~~~l~~l~~L-------~  430 (498)
                                    .+..+|. +               .++|+.|+++++ .++.+      |. +..  +|       +
T Consensus       171 --------------~L~~lp~-l---------------~~~L~~L~Ls~N-~L~~l------p~-~~~--~L~~~~~~L~  210 (571)
T 3cvr_A          171 --------------QLTFLPE-L---------------PESLEALDVSTN-LLESL------PA-VPV--RNHHSEETEI  210 (571)
T ss_dssp             --------------CCSCCCC-C---------------CTTCCEEECCSS-CCSSC------CC-CC----------CCE
T ss_pred             --------------CCCCcch-h---------------hCCCCEEECcCC-CCCch------hh-HHH--hhhcccccce
Confidence                          2222222 1               034677777664 44433      44 332  55       9


Q ss_pred             eEeeecCCCCCcCCCC-CccccccceeeccCch
Q 048322          431 SLKIWNCPNLTLFPEV-GLPSSLLDLYVNNCPR  462 (498)
Q Consensus       431 ~L~l~~c~~l~~lp~~-~~~~sL~~L~i~~c~~  462 (498)
                      +|++++| .++.+|.. ...++|+.|++++|+-
T Consensus       211 ~L~Ls~N-~l~~lp~~l~~l~~L~~L~L~~N~l  242 (571)
T 3cvr_A          211 FFRCREN-RITHIPENILSLDPTCTIILEDNPL  242 (571)
T ss_dssp             EEECCSS-CCCCCCGGGGGSCTTEEEECCSSSC
T ss_pred             EEecCCC-cceecCHHHhcCCCCCEEEeeCCcC
Confidence            9999985 78899975 3468999999999873

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.10  E-value=2.9e-10  Score=101.29  Aligned_cols=142  Identities=11%  Similarity=0.112  Sum_probs=100.0

Q ss_pred             CCccceeeeccCCCccccCCCCcchHHHHHHhcccccccCCCCccccEEEecCCCcceecCCCCCCCccEEEEeccEeee
Q 048322          281 FPRLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSYPRLCRLEVDECKELVCRTPIDSKLIKFMTISNSSLDM  360 (498)
Q Consensus       281 l~~L~~L~l~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~  360 (498)
                      +++|+.|++++| .++ .+|                  .+..+++|++|++++|....++....+++|++|++++|.+..
T Consensus        43 l~~L~~L~l~~n-~i~-~l~------------------~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~  102 (197)
T 4ezg_A           43 MNSLTYITLANI-NVT-DLT------------------GIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTS  102 (197)
T ss_dssp             HHTCCEEEEESS-CCS-CCT------------------TGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBG
T ss_pred             cCCccEEeccCC-Ccc-ChH------------------HHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCc
Confidence            788999999887 443 444                  234567899999999966556666678999999998874432


Q ss_pred             ecCCCCccCCCCCCcCCCCCCCCCeEEecCC--------CCCCCCCccEEEEcCCCCCCCccccCCCCccCCCCCCcCeE
Q 048322          361 IGCKGMLYDSQAGSSLPKPMTTTNVLEFGKL--------LEPGFQILETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSL  432 (498)
Q Consensus       361 ~~~~~l~~~~~~l~~lp~~l~~L~~L~i~~~--------~~~~lp~L~~L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L  432 (498)
                      ....          .+ ..+++|+.|++++|        .+..+++|+.|++++|..++.+      | .+..+++|++|
T Consensus       103 ~~~~----------~l-~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~------~-~l~~l~~L~~L  164 (197)
T 4ezg_A          103 DKIP----------NL-SGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI------M-PLKTLPELKSL  164 (197)
T ss_dssp             GGSC----------CC-TTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCC------G-GGGGCSSCCEE
T ss_pred             ccCh----------hh-cCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcccc------H-hhcCCCCCCEE
Confidence            1111          11 23478888888888        2456788999999887655543      4 57788889999


Q ss_pred             eeecCCCCCcCCCCCccccccceeeccCc
Q 048322          433 KIWNCPNLTLFPEVGLPSSLLDLYVNNCP  461 (498)
Q Consensus       433 ~l~~c~~l~~lp~~~~~~sL~~L~i~~c~  461 (498)
                      ++++| .+..++.....++|+.|++++++
T Consensus       165 ~l~~n-~i~~~~~l~~l~~L~~L~l~~N~  192 (197)
T 4ezg_A          165 NIQFD-GVHDYRGIEDFPKLNQLYAFSQT  192 (197)
T ss_dssp             ECTTB-CCCCCTTGGGCSSCCEEEECBC-
T ss_pred             ECCCC-CCcChHHhccCCCCCEEEeeCcc
Confidence            99886 56666644445788888888764

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.05  E-value=1.5e-09  Score=98.98  Aligned_cols=145  Identities=19%  Similarity=0.209  Sum_probs=81.3

Q ss_pred             CceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCC-CC-CCCccccceeeccccccceecCccccCCCCCCCCCC
Q 048322          176 IKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSL-PS-LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPS  253 (498)
Q Consensus       176 L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l-p~-i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~  253 (498)
                      .+.++.++.+...+|..+    .++|++|+|++|. +..+ |. ++.+++|++|+++++ .++.++...+.     .+++
T Consensus        21 ~~~v~c~~~~l~~ip~~~----~~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~-----~l~~   89 (229)
T 3e6j_A           21 GTTVDCRSKRHASVPAGI----PTNAQILYLHDNQ-ITKLEPGVFDSLINLKELYLGSN-QLGALPVGVFD-----SLTQ   89 (229)
T ss_dssp             TTEEECTTSCCSSCCSCC----CTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTT-----TCTT
T ss_pred             CCEeEccCCCcCccCCCC----CCCCCEEEcCCCc-cCccCHHHhhCccCCcEEECCCC-CCCCcChhhcc-----cCCC
Confidence            455666666666666544    2567777777753 4444 33 667777777777764 35666554433     3666


Q ss_pred             CceeeccCCCccccccccccCCccccCCCccceeeeccCCCccccCCCCcchHHHHHHhcccccccCCCCccccEEEecC
Q 048322          254 LKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSYPRLCRLEVDE  333 (498)
Q Consensus       254 L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~L~l~~  333 (498)
                      |+.|+++++ .++.+.+.....     +++|++|+++++ .++ .+|.                 .+..+++|+.|++++
T Consensus        90 L~~L~Ls~N-~l~~l~~~~~~~-----l~~L~~L~Ls~N-~l~-~lp~-----------------~~~~l~~L~~L~L~~  144 (229)
T 3e6j_A           90 LTVLDLGTN-QLTVLPSAVFDR-----LVHLKELFMCCN-KLT-ELPR-----------------GIERLTHLTHLALDQ  144 (229)
T ss_dssp             CCEEECCSS-CCCCCCTTTTTT-----CTTCCEEECCSS-CCC-SCCT-----------------TGGGCTTCSEEECCS
T ss_pred             cCEEECCCC-cCCccChhHhCc-----chhhCeEeccCC-ccc-ccCc-----------------ccccCCCCCEEECCC
Confidence            777777665 444443222222     667777777766 443 5554                 233456666666666


Q ss_pred             CCcceecC--CCCCCCccEEEEecc
Q 048322          334 CKELVCRT--PIDSKLIKFMTISNS  356 (498)
Q Consensus       334 ~~~~~~~~--~~~~~~L~~L~l~~~  356 (498)
                      |....++.  ...+++|+.|++++|
T Consensus       145 N~l~~~~~~~~~~l~~L~~L~l~~N  169 (229)
T 3e6j_A          145 NQLKSIPHGAFDRLSSLTHAYLFGN  169 (229)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             CcCCccCHHHHhCCCCCCEEEeeCC
Confidence            65444332  222455555555554

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.05  E-value=2.3e-09  Score=97.18  Aligned_cols=146  Identities=14%  Similarity=0.150  Sum_probs=83.6

Q ss_pred             ceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCC--CCCccccceeeccccccceecCccccCCCCCCCCCCC
Q 048322          177 KKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPS--LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSL  254 (498)
Q Consensus       177 ~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~--i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L  254 (498)
                      +.+++++++...+|..+.    ++|+.|+++++ .+..+|+  ++.+++|++|+++++ .+..++...+.     .+++|
T Consensus        14 ~~v~c~~~~l~~iP~~l~----~~l~~L~l~~n-~i~~i~~~~~~~l~~L~~L~Ls~N-~i~~~~~~~~~-----~l~~L   82 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTNLP----ETITEIRLEQN-TIKVIPPGAFSPYKKLRRIDLSNN-QISELAPDAFQ-----GLRSL   82 (220)
T ss_dssp             TEEECTTSCCSSCCSSCC----TTCCEEECCSS-CCCEECTTSSTTCTTCCEEECCSS-CCCEECTTTTT-----TCSSC
T ss_pred             CEEEcCCCCcCcCCCccC----cCCCEEECCCC-cCCCcCHhHhhCCCCCCEEECCCC-cCCCcCHHHhh-----CCcCC
Confidence            456666666666776443    56777777774 4555553  677777777777774 45555433332     36677


Q ss_pred             ceeeccCCCccccccccccCCccccCCCccceeeeccCCCccccCCCCcchHHHHHHhcccccccCCCCccccEEEecCC
Q 048322          255 KILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSYPRLCRLEVDEC  334 (498)
Q Consensus       255 ~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~L~l~~~  334 (498)
                      ++|+++++ .++.+.++....     +++|++|+++++ .+++..|.                 .+..+++|+.|++++|
T Consensus        83 ~~L~Ls~N-~l~~l~~~~f~~-----l~~L~~L~L~~N-~l~~~~~~-----------------~~~~l~~L~~L~L~~N  138 (220)
T 2v9t_B           83 NSLVLYGN-KITELPKSLFEG-----LFSLQLLLLNAN-KINCLRVD-----------------AFQDLHNLNLLSLYDN  138 (220)
T ss_dssp             CEEECCSS-CCCCCCTTTTTT-----CTTCCEEECCSS-CCCCCCTT-----------------TTTTCTTCCEEECCSS
T ss_pred             CEEECCCC-cCCccCHhHccC-----CCCCCEEECCCC-CCCEeCHH-----------------HcCCCCCCCEEECCCC
Confidence            77777665 344443322222     677777777766 34312222                 3445666777777766


Q ss_pred             CcceecC--CCCCCCccEEEEeccE
Q 048322          335 KELVCRT--PIDSKLIKFMTISNSS  357 (498)
Q Consensus       335 ~~~~~~~--~~~~~~L~~L~l~~~~  357 (498)
                      ....++.  ...+++|+.|++++|+
T Consensus       139 ~l~~~~~~~~~~l~~L~~L~L~~N~  163 (220)
T 2v9t_B          139 KLQTIAKGTFSPLRAIQTMHLAQNP  163 (220)
T ss_dssp             CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             cCCEECHHHHhCCCCCCEEEeCCCC
Confidence            6554332  2235556666665553

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.04  E-value=1.9e-09  Score=96.73  Aligned_cols=99  Identities=25%  Similarity=0.349  Sum_probs=57.8

Q ss_pred             ceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCC--CCCccccceeeccccccceecCccccCCCCCCCCCCC
Q 048322          177 KKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPS--LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSL  254 (498)
Q Consensus       177 ~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~--i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L  254 (498)
                      +.++.++++...+|..+    .++|++|++++| .+..+|+  ++.+++|++|+++++ .++.++...+.     .+++|
T Consensus        10 ~~v~c~~~~l~~~p~~~----~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~-----~l~~L   78 (208)
T 2o6s_A           10 TTVECYSQGRTSVPTGI----PAQTTYLDLETN-SLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFN-----KLTSL   78 (208)
T ss_dssp             TEEECCSSCCSSCCSCC----CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTT-----TCTTC
T ss_pred             CEEEecCCCccCCCCCC----CCCCcEEEcCCC-ccCcCChhhhcccccCcEEECCCC-ccCccChhhcC-----CCCCc
Confidence            45566666666666544    356778888775 4555554  667777777777774 45555554332     36666


Q ss_pred             ceeeccCCCccccccccccCCccccCCCccceeeeccC
Q 048322          255 KILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKC  292 (498)
Q Consensus       255 ~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c  292 (498)
                      ++|+++++ .++.+.+....     .+++|++|+++++
T Consensus        79 ~~L~Ls~n-~l~~~~~~~~~-----~l~~L~~L~L~~N  110 (208)
T 2o6s_A           79 TYLNLSTN-QLQSLPNGVFD-----KLTQLKELALNTN  110 (208)
T ss_dssp             CEEECCSS-CCCCCCTTTTT-----TCTTCCEEECCSS
T ss_pred             CEEECCCC-cCCccCHhHhc-----CccCCCEEEcCCC
Confidence            66666654 33333222111     2666666666665

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.01  E-value=3.9e-09  Score=95.65  Aligned_cols=147  Identities=12%  Similarity=0.101  Sum_probs=92.8

Q ss_pred             ceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCC-C--CCCccccceeeccccccceecCccccCCCCCCCCCC
Q 048322          177 KKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLP-S--LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPS  253 (498)
Q Consensus       177 ~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp-~--i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~  253 (498)
                      +.++++++....+|..+.    ..+++|++++| .+..++ .  ++.+++|++|+++++ .++.++...+.     .+++
T Consensus        14 ~~l~~s~n~l~~iP~~~~----~~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~-----~l~~   82 (220)
T 2v70_A           14 TTVDCSNQKLNKIPEHIP----QYTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFE-----GASG   82 (220)
T ss_dssp             TEEECCSSCCSSCCSCCC----TTCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSS-CCCEECTTTTT-----TCTT
T ss_pred             CEeEeCCCCcccCccCCC----CCCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCC-cCCEECHHHhC-----CCCC
Confidence            577788877777777553    45678888885 455553 2  677888888888874 47777654333     4778


Q ss_pred             CceeeccCCCccccccccccCCccccCCCccceeeeccCCCccccCCCCcchHHHHHHhcccccccCCCCccccEEEecC
Q 048322          254 LKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSYPRLCRLEVDE  333 (498)
Q Consensus       254 L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~L~l~~  333 (498)
                      |++|+++++ .++.+.++....     +++|++|+++++ .+++..|.                 .+..+++|+.|++++
T Consensus        83 L~~L~Ls~N-~l~~~~~~~~~~-----l~~L~~L~Ls~N-~l~~~~~~-----------------~~~~l~~L~~L~L~~  138 (220)
T 2v70_A           83 VNEILLTSN-RLENVQHKMFKG-----LESLKTLMLRSN-RITCVGND-----------------SFIGLSSVRLLSLYD  138 (220)
T ss_dssp             CCEEECCSS-CCCCCCGGGGTT-----CSSCCEEECTTS-CCCCBCTT-----------------SSTTCTTCSEEECTT
T ss_pred             CCEEECCCC-ccCccCHhHhcC-----CcCCCEEECCCC-cCCeECHh-----------------HcCCCccCCEEECCC
Confidence            888888766 444444322222     778888888877 44423333                 455567777788777


Q ss_pred             CCcceec--CCCCCCCccEEEEeccEe
Q 048322          334 CKELVCR--TPIDSKLIKFMTISNSSL  358 (498)
Q Consensus       334 ~~~~~~~--~~~~~~~L~~L~l~~~~l  358 (498)
                      |....+.  ....+++|+.|++++|++
T Consensus       139 N~l~~~~~~~~~~l~~L~~L~L~~N~l  165 (220)
T 2v70_A          139 NQITTVAPGAFDTLHSLSTLNLLANPF  165 (220)
T ss_dssp             SCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred             CcCCEECHHHhcCCCCCCEEEecCcCC
Confidence            7655542  223356666666666533

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.00  E-value=3.5e-09  Score=95.05  Aligned_cols=158  Identities=15%  Similarity=0.133  Sum_probs=99.3

Q ss_pred             cEEeEeCCCCCCCCCCCCCccccceeeccccccceecCccccCCCCCCCCCCCceeeccCCCccccccccccCCccccCC
Q 048322          202 EFLELENCNNCVSLPSLGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFENLPEWWHWDTDIKGNVHVDIF  281 (498)
Q Consensus       202 ~~L~l~~c~~~~~lp~i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l  281 (498)
                      +.++.++ ..++.+|. +..++|++|+++++ .++.++...++     .+++|++|+++++ .++.+.+.....     +
T Consensus        10 ~~v~c~~-~~l~~~p~-~~~~~l~~L~l~~n-~l~~~~~~~~~-----~l~~L~~L~l~~n-~l~~~~~~~~~~-----l   75 (208)
T 2o6s_A           10 TTVECYS-QGRTSVPT-GIPAQTTYLDLETN-SLKSLPNGVFD-----ELTSLTQLYLGGN-KLQSLPNGVFNK-----L   75 (208)
T ss_dssp             TEEECCS-SCCSSCCS-CCCTTCSEEECCSS-CCCCCCTTTTT-----TCTTCSEEECCSS-CCCCCCTTTTTT-----C
T ss_pred             CEEEecC-CCccCCCC-CCCCCCcEEEcCCC-ccCcCChhhhc-----ccccCcEEECCCC-ccCccChhhcCC-----C
Confidence            3455554 35666664 33568999999985 57777765543     5889999999876 555544332222     8


Q ss_pred             CccceeeeccCCCccccCCCCcchHHHHHHhcccccccCCCCccccEEEecCCCcceecC--CCCCCCccEEEEeccEee
Q 048322          282 PRLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSYPRLCRLEVDECKELVCRT--PIDSKLIKFMTISNSSLD  359 (498)
Q Consensus       282 ~~L~~L~l~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~l~  359 (498)
                      ++|++|++++| .++ .+|..                .+..+++|++|++++|....++.  ...+++|+.|++++|.  
T Consensus        76 ~~L~~L~Ls~n-~l~-~~~~~----------------~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~--  135 (208)
T 2o6s_A           76 TSLTYLNLSTN-QLQ-SLPNG----------------VFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ--  135 (208)
T ss_dssp             TTCCEEECCSS-CCC-CCCTT----------------TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC--
T ss_pred             CCcCEEECCCC-cCC-ccCHh----------------HhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCc--
Confidence            89999999887 454 44431                35567889999998887665443  3447888888887762  


Q ss_pred             eecCCCCccCCCCCCcCCC----CCCCCCeEEecCC-CCCCCCCccEEEEcC
Q 048322          360 MIGCKGMLYDSQAGSSLPK----PMTTTNVLEFGKL-LEPGFQILETLVIGN  406 (498)
Q Consensus       360 ~~~~~~l~~~~~~l~~lp~----~l~~L~~L~i~~~-~~~~lp~L~~L~l~~  406 (498)
                                   +..+|.    .+++|+.|++++| ..+.+|.|+.|.++.
T Consensus       136 -------------l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~l~~L~~~~  174 (208)
T 2o6s_A          136 -------------LKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWI  174 (208)
T ss_dssp             -------------CSCCCTTTTTTCTTCCEEECCSCCBCCCTTTTHHHHHHH
T ss_pred             -------------cceeCHHHhccCCCccEEEecCCCeecCCCCHHHHHHHH
Confidence                         222322    2355666666665 233444455555544

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.99  E-value=2.7e-09  Score=99.50  Aligned_cols=144  Identities=18%  Similarity=0.182  Sum_probs=83.9

Q ss_pred             CCCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCCCCCccccceeeccccccceecCccccCCCCCCCCC
Q 048322          173 HKCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPSLGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFP  252 (498)
Q Consensus       173 ~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~  252 (498)
                      +++|++|+++++....+| .+.  .+++|++|++++| .+..+|+++.+++|++|+++++ .++.++..       . .+
T Consensus        40 l~~L~~L~l~~n~i~~l~-~l~--~l~~L~~L~L~~N-~i~~~~~l~~l~~L~~L~L~~N-~l~~l~~~-------~-~~  106 (263)
T 1xeu_A           40 LSGVQNFNGDNSNIQSLA-GMQ--FFTNLKELHLSHN-QISDLSPLKDLTKLEELSVNRN-RLKNLNGI-------P-SA  106 (263)
T ss_dssp             HTTCSEEECTTSCCCCCT-TGG--GCTTCCEEECCSS-CCCCCGGGTTCSSCCEEECCSS-CCSCCTTC-------C-CS
T ss_pred             cCcCcEEECcCCCcccch-HHh--hCCCCCEEECCCC-ccCCChhhccCCCCCEEECCCC-ccCCcCcc-------c-cC
Confidence            366777777777666666 344  4677777777775 4566666777777777777764 35444421       1 15


Q ss_pred             CCceeeccCCCccccccccccCCccccCCCccceeeeccCCCccccCCCCcchHHHHHHhcccccccCCCCccccEEEec
Q 048322          253 SLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSYPRLCRLEVD  332 (498)
Q Consensus       253 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~L~l~  332 (498)
                      +|+.|+++++ .++.+.       .+..+++|+.|++++| .++ .+|                  .+..+++|+.|+++
T Consensus       107 ~L~~L~L~~N-~l~~~~-------~l~~l~~L~~L~Ls~N-~i~-~~~------------------~l~~l~~L~~L~L~  158 (263)
T 1xeu_A          107 CLSRLFLDNN-ELRDTD-------SLIHLKNLEILSIRNN-KLK-SIV------------------MLGFLSKLEVLDLH  158 (263)
T ss_dssp             SCCEEECCSS-CCSBSG-------GGTTCTTCCEEECTTS-CCC-BCG------------------GGGGCTTCCEEECT
T ss_pred             cccEEEccCC-ccCCCh-------hhcCcccccEEECCCC-cCC-CCh------------------HHccCCCCCEEECC
Confidence            6666766655 333321       1222677777777766 333 222                  23345667777777


Q ss_pred             CCCcceecCCCCCCCccEEEEeccE
Q 048322          333 ECKELVCRTPIDSKLIKFMTISNSS  357 (498)
Q Consensus       333 ~~~~~~~~~~~~~~~L~~L~l~~~~  357 (498)
                      +|..........+++|+.|++++|.
T Consensus       159 ~N~i~~~~~l~~l~~L~~L~l~~N~  183 (263)
T 1xeu_A          159 GNEITNTGGLTRLKKVNWIDLTGQK  183 (263)
T ss_dssp             TSCCCBCTTSTTCCCCCEEEEEEEE
T ss_pred             CCcCcchHHhccCCCCCEEeCCCCc
Confidence            7665555444446666666666653

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.99  E-value=4.7e-11  Score=118.31  Aligned_cols=241  Identities=12%  Similarity=0.071  Sum_probs=145.6

Q ss_pred             HhhcccCCcccEEEEecCCCCCCcChhhHHHhhhcCCCCCCCceEEEeecCCCCC----Ccccc-----CCCCCCccEEe
Q 048322          135 AALCEKLNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARF----PLWIG-----DPLFSKIEFLE  205 (498)
Q Consensus       135 ~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~----p~~~~-----~~~l~~L~~L~  205 (498)
                      ..+...++|+.|+|+.+.-     .......+...+..+++|++|+++++....+    |..+.     -..+++|++|+
T Consensus        26 ~~l~~~~~L~~L~L~~n~i-----~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~  100 (386)
T 2ca6_A           26 AVLLEDDSVKEIVLSGNTI-----GTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVR  100 (386)
T ss_dssp             HHHHHCSCCCEEECTTSEE-----CHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEE
T ss_pred             HHHhcCCCccEEECCCCCC-----CHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEE
Confidence            4566788999999977641     1222334556677789999999998765533    33331     01578999999


Q ss_pred             EeCCCCCC----CCCC-CCCccccceeeccccccceecCccccCCCCCCCC---------CCCceeeccCCCcccccc-c
Q 048322          206 LENCNNCV----SLPS-LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPF---------PSLKILRFENLPEWWHWD-T  270 (498)
Q Consensus       206 l~~c~~~~----~lp~-i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~---------~~L~~L~l~~~~~l~~~~-~  270 (498)
                      |++|..-.    .+|. +..+++|++|++++|. +...+...+.. .+..+         ++|++|+++++. +.... +
T Consensus       101 Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~-~l~~l~~~~~~~~~~~L~~L~L~~n~-l~~~~~~  177 (386)
T 2ca6_A          101 LSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG-LGPQAGAKIAR-ALQELAVNKKAKNAPPLRSIICGRNR-LENGSMK  177 (386)
T ss_dssp             CCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSC-CHHHHHHHHHH-HHHHHHHHHHHHTCCCCCEEECCSSC-CTGGGHH
T ss_pred             CCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCC-CCHHHHHHHHH-HHHHHhhhhhcccCCCCcEEECCCCC-CCcHHHH
Confidence            99975333    2554 7788999999999874 43222111110 00112         899999998873 32111 1


Q ss_pred             cccCCccccCCCccceeeeccCCCccccCCCCcchHHHHHHhcccccccCCCCccccEEEecCCCcc-----eec-CCCC
Q 048322          271 DIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSYPRLCRLEVDECKEL-----VCR-TPID  344 (498)
Q Consensus       271 ~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~L~l~~~~~~-----~~~-~~~~  344 (498)
                      ...  ..+..+++|++|++++| .+..      ..+..++      ...+..+++|++|++++|...     .++ ....
T Consensus       178 ~l~--~~l~~~~~L~~L~L~~n-~l~~------~g~~~l~------~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~  242 (386)
T 2ca6_A          178 EWA--KTFQSHRLLHTVKMVQN-GIRP------EGIEHLL------LEGLAYCQELKVLDLQDNTFTHLGSSALAIALKS  242 (386)
T ss_dssp             HHH--HHHHHCTTCCEEECCSS-CCCH------HHHHHHH------HTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGG
T ss_pred             HHH--HHHHhCCCcCEEECcCC-CCCH------hHHHHHH------HHHhhcCCCccEEECcCCCCCcHHHHHHHHHHcc
Confidence            000  01123789999999988 3320      0011110      013445788999999988753     122 2345


Q ss_pred             CCCccEEEEeccEeeeecCCCCccCCCCCCcCCC-----CCCCCCeEEecCCCC-------------CCCCCccEEEEcC
Q 048322          345 SKLIKFMTISNSSLDMIGCKGMLYDSQAGSSLPK-----PMTTTNVLEFGKLLE-------------PGFQILETLVIGN  406 (498)
Q Consensus       345 ~~~L~~L~l~~~~l~~~~~~~l~~~~~~l~~lp~-----~l~~L~~L~i~~~~~-------------~~lp~L~~L~l~~  406 (498)
                      +++|++|++++|.+...+..          .+|.     ..++|+.|++++|.+             ..+|+|+.|++++
T Consensus       243 ~~~L~~L~L~~n~i~~~~~~----------~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~  312 (386)
T 2ca6_A          243 WPNLRELGLNDCLLSARGAA----------AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNG  312 (386)
T ss_dssp             CTTCCEEECTTCCCCHHHHH----------HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTT
T ss_pred             CCCcCEEECCCCCCchhhHH----------HHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccC
Confidence            78899999988744322110          0111     247899999999822             2378899999988


Q ss_pred             CC
Q 048322          407 SE  408 (498)
Q Consensus       407 c~  408 (498)
                      |+
T Consensus       313 N~  314 (386)
T 2ca6_A          313 NR  314 (386)
T ss_dssp             SB
T ss_pred             Cc
Confidence            64

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.97  E-value=3.5e-09  Score=103.69  Aligned_cols=74  Identities=23%  Similarity=0.278  Sum_probs=33.1

Q ss_pred             eEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCC--CC-CccccceeeccccccceecCccccCCCCCCCCCCC
Q 048322          178 KVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPS--LG-LLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSL  254 (498)
Q Consensus       178 ~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~--i~-~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L  254 (498)
                      .+++++++...+|..+.    .+++.|+|++| .++.+++  +. .+++|++|+++++ .+..++...+.     .+++|
T Consensus        22 ~l~c~~~~l~~iP~~~~----~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~-----~l~~L   90 (361)
T 2xot_A           22 ILSCSKQQLPNVPQSLP----SYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFV-----PVPNL   90 (361)
T ss_dssp             EEECCSSCCSSCCSSCC----TTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTT-----TCTTC
T ss_pred             EEEeCCCCcCccCccCC----CCCCEEECCCC-CCCccChhhhhhcccccCEEECCCC-cCCccChhhcc-----CCCCC
Confidence            44444444444444332    23455555553 3344433  33 4555555555542 34444433222     34555


Q ss_pred             ceeeccCC
Q 048322          255 KILRFENL  262 (498)
Q Consensus       255 ~~L~l~~~  262 (498)
                      ++|+++++
T Consensus        91 ~~L~Ls~N   98 (361)
T 2xot_A           91 RYLDLSSN   98 (361)
T ss_dssp             CEEECCSS
T ss_pred             CEEECCCC
Confidence            55555443

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.97  E-value=4.9e-10  Score=104.61  Aligned_cols=142  Identities=13%  Similarity=0.089  Sum_probs=87.7

Q ss_pred             CCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCCCCCccccceeeccccccceecCccccCCCCCCCCCC
Q 048322          174 KCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPSLGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPS  253 (498)
Q Consensus       174 ~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~  253 (498)
                      .++..+.+.++....++. +.  .+++|++|++++| .+..+|.++.+++|++|+++++ .+..++. +      ..+++
T Consensus        19 ~~l~~l~l~~~~i~~~~~-~~--~l~~L~~L~l~~n-~i~~l~~l~~l~~L~~L~L~~N-~i~~~~~-l------~~l~~   86 (263)
T 1xeu_A           19 ANAVKQNLGKQSVTDLVS-QK--ELSGVQNFNGDNS-NIQSLAGMQFFTNLKELHLSHN-QISDLSP-L------KDLTK   86 (263)
T ss_dssp             HHHHHHHHTCSCTTSEEC-HH--HHTTCSEEECTTS-CCCCCTTGGGCTTCCEEECCSS-CCCCCGG-G------TTCSS
T ss_pred             HHHHHHHhcCCCcccccc-hh--hcCcCcEEECcCC-CcccchHHhhCCCCCEEECCCC-ccCCChh-h------ccCCC
Confidence            445555566665555552 33  4788888888886 5777777888888888888875 4666554 2      24777


Q ss_pred             CceeeccCCCccccccccccCCccccCCCccceeeeccCCCccccCCCCcchHHHHHHhcccccccCCCCccccEEEecC
Q 048322          254 LKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSYPRLCRLEVDE  333 (498)
Q Consensus       254 L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~L~l~~  333 (498)
                      |+.|+++++ .++.+..       +. .++|+.|++++| .++ .+|                  .+..+++|+.|++++
T Consensus        87 L~~L~L~~N-~l~~l~~-------~~-~~~L~~L~L~~N-~l~-~~~------------------~l~~l~~L~~L~Ls~  137 (263)
T 1xeu_A           87 LEELSVNRN-RLKNLNG-------IP-SACLSRLFLDNN-ELR-DTD------------------SLIHLKNLEILSIRN  137 (263)
T ss_dssp             CCEEECCSS-CCSCCTT-------CC-CSSCCEEECCSS-CCS-BSG------------------GGTTCTTCCEEECTT
T ss_pred             CCEEECCCC-ccCCcCc-------cc-cCcccEEEccCC-ccC-CCh------------------hhcCcccccEEECCC
Confidence            777777765 3333321       01 266777777766 333 222                  344566777777777


Q ss_pred             CCcceecCCCCCCCccEEEEecc
Q 048322          334 CKELVCRTPIDSKLIKFMTISNS  356 (498)
Q Consensus       334 ~~~~~~~~~~~~~~L~~L~l~~~  356 (498)
                      |....++....+++|+.|++++|
T Consensus       138 N~i~~~~~l~~l~~L~~L~L~~N  160 (263)
T 1xeu_A          138 NKLKSIVMLGFLSKLEVLDLHGN  160 (263)
T ss_dssp             SCCCBCGGGGGCTTCCEEECTTS
T ss_pred             CcCCCChHHccCCCCCEEECCCC
Confidence            76555554445666666666665

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=98.92  E-value=6.2e-09  Score=94.28  Aligned_cols=130  Identities=18%  Similarity=0.218  Sum_probs=80.5

Q ss_pred             CCCceEEEeecCCCCCCc-cccCCCCCCccEEeEeCCCCCCCC-CC-CCCccccceeeccccccceecCccccCCCCCCC
Q 048322          174 KCIKKVAIRNYGGARFPL-WIGDPLFSKIEFLELENCNNCVSL-PS-LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMP  250 (498)
Q Consensus       174 ~~L~~L~l~~~~~~~~p~-~~~~~~l~~L~~L~l~~c~~~~~l-p~-i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~  250 (498)
                      ++|+.|+++++....+|. .+.  .+++|++|+|++| .+..+ |. ++.+++|++|+++++ .++.++...+.     .
T Consensus        32 ~~l~~L~l~~n~i~~i~~~~~~--~l~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~-----~  102 (220)
T 2v9t_B           32 ETITEIRLEQNTIKVIPPGAFS--PYKKLRRIDLSNN-QISELAPDAFQGLRSLNSLVLYGN-KITELPKSLFE-----G  102 (220)
T ss_dssp             TTCCEEECCSSCCCEECTTSST--TCTTCCEEECCSS-CCCEECTTTTTTCSSCCEEECCSS-CCCCCCTTTTT-----T
T ss_pred             cCCCEEECCCCcCCCcCHhHhh--CCCCCCEEECCCC-cCCCcCHHHhhCCcCCCEEECCCC-cCCccCHhHcc-----C
Confidence            567777777777666554 333  4677777777775 34444 33 777777777777774 46666665443     4


Q ss_pred             CCCCceeeccCCCccccccccccCCccccCCCccceeeeccCCCccccCCCCcchHHHHHHhcccccccCCCCccccEEE
Q 048322          251 FPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSYPRLCRLE  330 (498)
Q Consensus       251 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~L~  330 (498)
                      +++|+.|+++++ .+..+.++...     .+++|+.|+++++ .++ .+|..                .+..+++|+.|+
T Consensus       103 l~~L~~L~L~~N-~l~~~~~~~~~-----~l~~L~~L~L~~N-~l~-~~~~~----------------~~~~l~~L~~L~  158 (220)
T 2v9t_B          103 LFSLQLLLLNAN-KINCLRVDAFQ-----DLHNLNLLSLYDN-KLQ-TIAKG----------------TFSPLRAIQTMH  158 (220)
T ss_dssp             CTTCCEEECCSS-CCCCCCTTTTT-----TCTTCCEEECCSS-CCS-CCCTT----------------TTTTCTTCCEEE
T ss_pred             CCCCCEEECCCC-CCCEeCHHHcC-----CCCCCCEEECCCC-cCC-EECHH----------------HHhCCCCCCEEE
Confidence            777777777765 44444332222     2677788888776 343 33321                344567777777


Q ss_pred             ecCCCc
Q 048322          331 VDECKE  336 (498)
Q Consensus       331 l~~~~~  336 (498)
                      +++|+.
T Consensus       159 L~~N~~  164 (220)
T 2v9t_B          159 LAQNPF  164 (220)
T ss_dssp             CCSSCE
T ss_pred             eCCCCc
Confidence            777654

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.87  E-value=3.3e-09  Score=91.64  Aligned_cols=56  Identities=23%  Similarity=0.361  Sum_probs=29.7

Q ss_pred             CCCceEEEeecCCC--CCCccccCCCCCCccEEeEeCCCCCCCCCCCCCccccceeecccc
Q 048322          174 KCIKKVAIRNYGGA--RFPLWIGDPLFSKIEFLELENCNNCVSLPSLGLLSSLKHLAVKGL  232 (498)
Q Consensus       174 ~~L~~L~l~~~~~~--~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~i~~l~~L~~L~l~~~  232 (498)
                      ++|++|+++++...  .+|..+.  .+++|++|++++|. +..++.++.+++|++|++++|
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~--~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~Ls~N   81 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTA--EFVNLEFLSLINVG-LISVSNLPKLPKLKKLELSEN   81 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCG--GGGGCCEEEEESSC-CCCCSSCCCCSSCCEEEEESC
T ss_pred             ccCCEEECCCCCCChhhHHHHHH--hCCCCCEEeCcCCC-CCChhhhccCCCCCEEECcCC
Confidence            55555555555544  4555443  35555666665543 444444555555555555554

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.87  E-value=5.9e-09  Score=95.10  Aligned_cols=129  Identities=16%  Similarity=0.145  Sum_probs=97.8

Q ss_pred             CCcccEEEEecCCCCCCcChhhHHHhhhcCCCCCCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCC--C
Q 048322          141 LNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPS--L  218 (498)
Q Consensus       141 ~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~--i  218 (498)
                      .+|+.|+|+++.-..         .....+..+++|++|+++++....+|..... .+++|++|+|++| .++.+|+  +
T Consensus        40 ~~L~~L~Ls~n~i~~---------~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~-~l~~L~~L~Ls~N-~l~~l~~~~~  108 (229)
T 3e6j_A           40 TNAQILYLHDNQITK---------LEPGVFDSLINLKELYLGSNQLGALPVGVFD-SLTQLTVLDLGTN-QLTVLPSAVF  108 (229)
T ss_dssp             TTCSEEECCSSCCCC---------CCTTTTTTCTTCCEEECCSSCCCCCCTTTTT-TCTTCCEEECCSS-CCCCCCTTTT
T ss_pred             CCCCEEEcCCCccCc---------cCHHHhhCccCCcEEECCCCCCCCcChhhcc-cCCCcCEEECCCC-cCCccChhHh
Confidence            789999998875211         1123456678999999999998888754322 5899999999996 6777776  7


Q ss_pred             CCccccceeeccccccceecCccccCCCCCCCCCCCceeeccCCCccccccccccCCccccCCCccceeeeccCC
Q 048322          219 GLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCP  293 (498)
Q Consensus       219 ~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~  293 (498)
                      +.+++|++|+++++ .+..+|..+.      .+++|+.|+++++ .+..+.++...     .+++|+.|++.+++
T Consensus       109 ~~l~~L~~L~Ls~N-~l~~lp~~~~------~l~~L~~L~L~~N-~l~~~~~~~~~-----~l~~L~~L~l~~N~  170 (229)
T 3e6j_A          109 DRLVHLKELFMCCN-KLTELPRGIE------RLTHLTHLALDQN-QLKSIPHGAFD-----RLSSLTHAYLFGNP  170 (229)
T ss_dssp             TTCTTCCEEECCSS-CCCSCCTTGG------GCTTCSEEECCSS-CCCCCCTTTTT-----TCTTCCEEECTTSC
T ss_pred             CcchhhCeEeccCC-cccccCcccc------cCCCCCEEECCCC-cCCccCHHHHh-----CCCCCCEEEeeCCC
Confidence            88999999999985 5888887664      4899999999886 55655433223     38999999999885

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.87  E-value=3.5e-11  Score=118.09  Aligned_cols=44  Identities=11%  Similarity=0.178  Sum_probs=22.9

Q ss_pred             CCCCCccEEEEcCCC--CCCCccccCCCCccCCCCCCcCeEeeecCC
Q 048322          394 PGFQILETLVIGNSE--QLKPWRQGRGLSMGFQRLTSLQSLKIWNCP  438 (498)
Q Consensus       394 ~~lp~L~~L~l~~c~--~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~  438 (498)
                      ..+++|+.|++++|.  .++. ..+..++..+..+++|++|++++++
T Consensus       250 ~~l~~L~~L~L~~n~l~~i~~-~~~~~l~~~~~~l~~L~~LdL~~N~  295 (362)
T 3goz_A          250 DSLKHLQTVYLDYDIVKNMSK-EQCKALGAAFPNIQKIILVDKNGKE  295 (362)
T ss_dssp             TTTTTCSEEEEEHHHHTTCCH-HHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred             hcCCCccEEEeccCCccccCH-HHHHHHHHHhccCCceEEEecCCCc
Confidence            344556777776653  1110 0011124455667777777777753

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.85  E-value=6.7e-09  Score=101.70  Aligned_cols=158  Identities=15%  Similarity=0.161  Sum_probs=107.0

Q ss_pred             CCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCC--CCCccccceeeccccccceecCccccCCCCCCCC
Q 048322          174 KCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPS--LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPF  251 (498)
Q Consensus       174 ~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~--i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~  251 (498)
                      .++++|+++++....+|.......+++|++|+|++| .+..+++  ++.+++|++|+++++ .++.++...+.     .+
T Consensus        39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~-----~l  111 (361)
T 2xot_A           39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSSN-HLHTLDEFLFS-----DL  111 (361)
T ss_dssp             TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTT-----TC
T ss_pred             CCCCEEECCCCCCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECCCC-cCCcCCHHHhC-----CC
Confidence            568899999988877765433224889999999986 5666664  888999999999985 58888776554     58


Q ss_pred             CCCceeeccCCCccccccccccCCccccCCCccceeeeccCCCccccCCCCcchHHHHHHhcccccccCCCCccccEEEe
Q 048322          252 PSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSYPRLCRLEV  331 (498)
Q Consensus       252 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~L~l  331 (498)
                      ++|+.|+++++ .+..+.+.....     +++|+.|++++| .++ .+|..+             ...+..+++|+.|++
T Consensus       112 ~~L~~L~L~~N-~i~~~~~~~~~~-----l~~L~~L~L~~N-~l~-~l~~~~-------------~~~~~~l~~L~~L~L  170 (361)
T 2xot_A          112 QALEVLLLYNN-HIVVVDRNAFED-----MAQLQKLYLSQN-QIS-RFPVEL-------------IKDGNKLPKLMLLDL  170 (361)
T ss_dssp             TTCCEEECCSS-CCCEECTTTTTT-----CTTCCEEECCSS-CCC-SCCGGG-------------TC----CTTCCEEEC
T ss_pred             cCCCEEECCCC-cccEECHHHhCC-----cccCCEEECCCC-cCC-eeCHHH-------------hcCcccCCcCCEEEC
Confidence            89999999876 445444332222     889999999987 554 555410             001134788889999


Q ss_pred             cCCCcceecC--CCCCCC--ccEEEEeccEee
Q 048322          332 DECKELVCRT--PIDSKL--IKFMTISNSSLD  359 (498)
Q Consensus       332 ~~~~~~~~~~--~~~~~~--L~~L~l~~~~l~  359 (498)
                      ++|....++.  ...++.  ++.|++.+|++.
T Consensus       171 ~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          171 SSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             CSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             CCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence            8887655331  122444  477888887553

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.83  E-value=3.9e-12  Score=131.89  Aligned_cols=36  Identities=8%  Similarity=0.002  Sum_probs=19.2

Q ss_pred             CCCccccEEEecCCCcceecCCCCCCCccEEEEecc
Q 048322          321 SSYPRLCRLEVDECKELVCRTPIDSKLIKFMTISNS  356 (498)
Q Consensus       321 ~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~  356 (498)
                      ..+++|+.|++++|....++....+++|+.|++++|
T Consensus       483 ~~l~~L~~L~Ls~N~l~~lp~l~~l~~L~~L~Ls~N  518 (567)
T 1dce_A          483 AALRCLEVLQASDNALENVDGVANLPRLQELLLCNN  518 (567)
T ss_dssp             GGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSS
T ss_pred             hcCCCCCEEECCCCCCCCCcccCCCCCCcEEECCCC
Confidence            345555666666555544444444555555555554

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=98.81  E-value=2.3e-08  Score=90.47  Aligned_cols=131  Identities=11%  Similarity=0.130  Sum_probs=89.8

Q ss_pred             CCCceEEEeecCCCCCCc--cccCCCCCCccEEeEeCCCCCCCCCC--CCCccccceeeccccccceecCccccCCCCCC
Q 048322          174 KCIKKVAIRNYGGARFPL--WIGDPLFSKIEFLELENCNNCVSLPS--LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSM  249 (498)
Q Consensus       174 ~~L~~L~l~~~~~~~~p~--~~~~~~l~~L~~L~l~~c~~~~~lp~--i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~  249 (498)
                      ..+++|+++++....++.  .+.  .+++|++|++++| .++.+++  ++.+++|++|+++++ .+..++...++     
T Consensus        32 ~~~~~L~L~~N~l~~~~~~~~~~--~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~-----  102 (220)
T 2v70_A           32 QYTAELRLNNNEFTVLEATGIFK--KLPQLRKINFSNN-KITDIEEGAFEGASGVNEILLTSN-RLENVQHKMFK-----  102 (220)
T ss_dssp             TTCSEEECCSSCCCEECCCCCGG--GCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCCCCCGGGGT-----
T ss_pred             CCCCEEEcCCCcCCccCchhhhc--cCCCCCEEECCCC-cCCEECHHHhCCCCCCCEEECCCC-ccCccCHhHhc-----
Confidence            467888888888776632  244  5788888888885 4666654  788888888888884 46777665443     


Q ss_pred             CCCCCceeeccCCCccccccccccCCccccCCCccceeeeccCCCccccCCCCcchHHHHHHhcccccccCCCCccccEE
Q 048322          250 PFPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSYPRLCRL  329 (498)
Q Consensus       250 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~L  329 (498)
                      .+++|++|+++++ .++.+.+.....     +++|+.|++++| .+++..|.                 .+..+++|+.|
T Consensus       103 ~l~~L~~L~Ls~N-~l~~~~~~~~~~-----l~~L~~L~L~~N-~l~~~~~~-----------------~~~~l~~L~~L  158 (220)
T 2v70_A          103 GLESLKTLMLRSN-RITCVGNDSFIG-----LSSVRLLSLYDN-QITTVAPG-----------------AFDTLHSLSTL  158 (220)
T ss_dssp             TCSSCCEEECTTS-CCCCBCTTSSTT-----CTTCSEEECTTS-CCCCBCTT-----------------TTTTCTTCCEE
T ss_pred             CCcCCCEEECCCC-cCCeECHhHcCC-----CccCCEEECCCC-cCCEECHH-----------------HhcCCCCCCEE
Confidence            4888888888876 455544332222     788888888887 45423343                 45567788888


Q ss_pred             EecCCCcc
Q 048322          330 EVDECKEL  337 (498)
Q Consensus       330 ~l~~~~~~  337 (498)
                      ++++|+..
T Consensus       159 ~L~~N~l~  166 (220)
T 2v70_A          159 NLLANPFN  166 (220)
T ss_dssp             ECCSCCEE
T ss_pred             EecCcCCc
Confidence            88887643

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.74  E-value=8.7e-09  Score=88.98  Aligned_cols=138  Identities=20%  Similarity=0.227  Sum_probs=96.7

Q ss_pred             ccCCcccEEEEecCCCCCCcChhhHHHhhhcCCCCCCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCC-
Q 048322          139 EKLNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPS-  217 (498)
Q Consensus       139 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~-  217 (498)
                      ..++|+.|+++.+.-.        ...+...+..+++|++|+++++....+ ..+.  .+++|++|++++|.....+|. 
T Consensus        22 ~~~~L~~L~l~~n~l~--------~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~--~l~~L~~L~Ls~N~l~~~~~~~   90 (168)
T 2ell_A           22 TPAAVRELVLDNCKSN--------DGKIEGLTAEFVNLEFLSLINVGLISV-SNLP--KLPKLKKLELSENRIFGGLDML   90 (168)
T ss_dssp             CTTSCSEEECCSCBCB--------TTBCSSCCGGGGGCCEEEEESSCCCCC-SSCC--CCSSCCEEEEESCCCCSCCCHH
T ss_pred             CcccCCEEECCCCCCC--------hhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhc--cCCCCCEEECcCCcCchHHHHH
Confidence            3578999999876521        012333445668999999999987777 4455  589999999999754444666 


Q ss_pred             CCCccccceeeccccccceecCc-cccCCCCCCCCCCCceeeccCCCccccccc---cccCCccccCCCccceeeeccCC
Q 048322          218 LGLLSSLKHLAVKGLKKLKSIES-EVYGEGFSMPFPSLKILRFENLPEWWHWDT---DIKGNVHVDIFPRLQELSVVKCP  293 (498)
Q Consensus       218 i~~l~~L~~L~l~~~~~l~~i~~-~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~---~~~~~~~~~~l~~L~~L~l~~c~  293 (498)
                      ++.+++|++|++++| .++.++. ..+     ..+++|+.|+++++ .+..+..   ..     +..+++|+.|++.+|.
T Consensus        91 ~~~l~~L~~L~Ls~N-~l~~~~~~~~l-----~~l~~L~~L~l~~N-~l~~~~~~~~~~-----~~~l~~L~~L~l~~n~  158 (168)
T 2ell_A           91 AEKLPNLTHLNLSGN-KLKDISTLEPL-----KKLECLKSLDLFNC-EVTNLNDYRESV-----FKLLPQLTYLDGYDRE  158 (168)
T ss_dssp             HHHCTTCCEEECBSS-SCCSSGGGGGG-----SSCSCCCEEECCSS-GGGTSTTHHHHH-----HTTCSSCCEETTEETT
T ss_pred             HhhCCCCCEEeccCC-ccCcchhHHHH-----hcCCCCCEEEeeCC-cCcchHHHHHHH-----HHhCccCcEecCCCCC
Confidence            566999999999996 5777652 222     35899999999887 4444432   12     2338999999999985


Q ss_pred             CccccCCC
Q 048322          294 KLSGKLPE  301 (498)
Q Consensus       294 ~l~~~lp~  301 (498)
                      . . .+|.
T Consensus       159 ~-~-~~~~  164 (168)
T 2ell_A          159 D-Q-EAPD  164 (168)
T ss_dssp             S-C-BCCS
T ss_pred             h-h-hccc
Confidence            4 2 5554

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.74  E-value=9.3e-09  Score=89.59  Aligned_cols=138  Identities=14%  Similarity=0.187  Sum_probs=92.9

Q ss_pred             CCCCCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCCCCCccccceeeccccccceecCccccCCCCCCC
Q 048322          171 QPHKCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPSLGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMP  250 (498)
Q Consensus       171 ~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~  250 (498)
                      .++.+|++|+++++....+|....  ..++|++|++++| .++.++.++.+++|++|+++++ .+..++..+++     .
T Consensus        16 ~~~~~L~~L~l~~n~l~~i~~~~~--~~~~L~~L~Ls~N-~l~~~~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~-----~   86 (176)
T 1a9n_A           16 TNAVRDRELDLRGYKIPVIENLGA--TLDQFDAIDFSDN-EIRKLDGFPLLRRLKTLLVNNN-RICRIGEGLDQ-----A   86 (176)
T ss_dssp             ECTTSCEEEECTTSCCCSCCCGGG--GTTCCSEEECCSS-CCCEECCCCCCSSCCEEECCSS-CCCEECSCHHH-----H
T ss_pred             CCcCCceEEEeeCCCCchhHHhhh--cCCCCCEEECCCC-CCCcccccccCCCCCEEECCCC-cccccCcchhh-----c
Confidence            345788999999888877765433  3458999999986 5666777888999999999885 57788765543     4


Q ss_pred             CCCCceeeccCCCccccccccccCCccccCCCccceeeeccCCCccccCCCCcchHHHHHHhcccccccCCCCccccEEE
Q 048322          251 FPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSYPRLCRLE  330 (498)
Q Consensus       251 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~L~  330 (498)
                      +++|++|+++++ .+..+..    ...+..+++|+.|++++|+ +. .+|..    +..         .+..+++|+.|+
T Consensus        87 l~~L~~L~L~~N-~i~~~~~----~~~l~~l~~L~~L~l~~N~-i~-~~~~~----~~~---------~~~~l~~L~~Ld  146 (176)
T 1a9n_A           87 LPDLTELILTNN-SLVELGD----LDPLASLKSLTYLCILRNP-VT-NKKHY----RLY---------VIYKVPQVRVLD  146 (176)
T ss_dssp             CTTCCEEECCSC-CCCCGGG----GGGGGGCTTCCEEECCSSG-GG-GSTTH----HHH---------HHHHCTTCSEET
T ss_pred             CCCCCEEECCCC-cCCcchh----hHhhhcCCCCCEEEecCCC-CC-CcHhH----HHH---------HHHHCCccceeC
Confidence            889999999876 4444432    0112338899999999884 33 44431    111         122356777777


Q ss_pred             ecCCCcc
Q 048322          331 VDECKEL  337 (498)
Q Consensus       331 l~~~~~~  337 (498)
                      ++++...
T Consensus       147 ~~~n~~~  153 (176)
T 1a9n_A          147 FQKVKLK  153 (176)
T ss_dssp             TEECCHH
T ss_pred             CCcCCHH
Confidence            7776543

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.73  E-value=6.3e-08  Score=85.65  Aligned_cols=80  Identities=14%  Similarity=0.267  Sum_probs=40.6

Q ss_pred             CCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCC--CCCccccceeeccccccceecCccccCCCCCCCC
Q 048322          174 KCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPS--LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPF  251 (498)
Q Consensus       174 ~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~--i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~  251 (498)
                      ++|++|+++++....+|..+.  .+++|++|+|++| .++.+++  ++.+++|++|+++++ .+..++...+.     .+
T Consensus        31 ~~l~~L~L~~n~i~~ip~~~~--~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N-~l~~i~~~~f~-----~l  101 (193)
T 2wfh_A           31 RDVTELYLDGNQFTLVPKELS--NYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSYN-RLRCIPPRTFD-----GL  101 (193)
T ss_dssp             TTCCEEECCSSCCCSCCGGGG--GCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTT-----TC
T ss_pred             CCCCEEECCCCcCchhHHHhh--cccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCCC-ccCEeCHHHhC-----CC
Confidence            455556665555555554444  3555666665553 3444443  555555555555553 34444443222     24


Q ss_pred             CCCceeeccCC
Q 048322          252 PSLKILRFENL  262 (498)
Q Consensus       252 ~~L~~L~l~~~  262 (498)
                      ++|+.|+++++
T Consensus       102 ~~L~~L~L~~N  112 (193)
T 2wfh_A          102 KSLRLLSLHGN  112 (193)
T ss_dssp             TTCCEEECCSS
T ss_pred             CCCCEEECCCC
Confidence            55555555443

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.73  E-value=6e-08  Score=85.73  Aligned_cols=99  Identities=18%  Similarity=0.176  Sum_probs=42.9

Q ss_pred             ceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCC---CCCccccceeeccccccceecCccccCCCCCCCCCC
Q 048322          177 KKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPS---LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPS  253 (498)
Q Consensus       177 ~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~---i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~  253 (498)
                      +.+++++++...+|..+.    .+|++|+++++ .+..+++   ++.+++|++|+++++ .++.++...++     .+++
T Consensus        11 ~~l~~s~~~l~~ip~~~~----~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~-----~l~~   79 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDIP----LHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNAFE-----GASH   79 (192)
T ss_dssp             TEEECTTSCCSSCCSCCC----TTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTTT-----TCTT
T ss_pred             CEEEcCCCCcCcCccCCC----CCCCEEECCCC-cCCccCCccccccCCCCCEEECCCC-CCCCcCHhHcC-----Cccc
Confidence            444555555445554332    24555555553 3333332   445555555555543 24433222221     2455


Q ss_pred             CceeeccCCCccccccccccCCccccCCCccceeeeccC
Q 048322          254 LKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKC  292 (498)
Q Consensus       254 L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c  292 (498)
                      |++|+++++ .++.+.+.....     +++|++|+++++
T Consensus        80 L~~L~Ls~N-~l~~~~~~~~~~-----l~~L~~L~L~~N  112 (192)
T 1w8a_A           80 IQELQLGEN-KIKEISNKMFLG-----LHQLKTLNLYDN  112 (192)
T ss_dssp             CCEEECCSC-CCCEECSSSSTT-----CTTCCEEECCSS
T ss_pred             CCEEECCCC-cCCccCHHHhcC-----CCCCCEEECCCC
Confidence            555555444 233332221111     455555555554

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.72  E-value=1.7e-10  Score=113.22  Aligned_cols=243  Identities=10%  Similarity=-0.000  Sum_probs=137.6

Q ss_pred             HhhcccCCcccEEEEecCCCCCCcChhhHHHhhhcCCCCC-CCceEEEeecCCCCC-CccccC---CCCCCccEEeEeCC
Q 048322          135 AALCEKLNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHK-CIKKVAIRNYGGARF-PLWIGD---PLFSKIEFLELENC  209 (498)
Q Consensus       135 ~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~-~L~~L~l~~~~~~~~-p~~~~~---~~l~~L~~L~l~~c  209 (498)
                      +.+...++|+.|+|+++.-     .......+.+.+..++ +|++|+++++..... +..+..   ...++|++|++++|
T Consensus        16 ~~~~~~~~L~~L~Ls~n~l-----~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n   90 (362)
T 3goz_A           16 EFTSIPHGVTSLDLSLNNL-----YSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGN   90 (362)
T ss_dssp             HHHTSCTTCCEEECTTSCG-----GGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSS
T ss_pred             HHHhCCCCceEEEccCCCC-----ChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCC
Confidence            3445566699999987752     0111223334455556 899999999876544 333331   01388999999997


Q ss_pred             CCCCCCC-C-----CCCc-cccceeeccccccceecCccccCCCCCCC-CCCCceeeccCCCccccccccccCCccccCC
Q 048322          210 NNCVSLP-S-----LGLL-SSLKHLAVKGLKKLKSIESEVYGEGFSMP-FPSLKILRFENLPEWWHWDTDIKGNVHVDIF  281 (498)
Q Consensus       210 ~~~~~lp-~-----i~~l-~~L~~L~l~~~~~l~~i~~~~~~~~~~~~-~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l  281 (498)
                      . ++..+ .     +..+ ++|++|++++|. ++..+...+.. .+.. .++|++|+++++ .+......... ..+..+
T Consensus        91 ~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~-~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~-~~l~~~  165 (362)
T 3goz_A           91 F-LSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQ-AFSNLPASITSLNLRGN-DLGIKSSDELI-QILAAI  165 (362)
T ss_dssp             C-GGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHH-HHTTSCTTCCEEECTTS-CGGGSCHHHHH-HHHHTS
T ss_pred             c-CChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHH-HHHhCCCceeEEEccCC-cCCHHHHHHHH-HHHhcC
Confidence            5 44333 2     3334 789999999864 55554432210 1112 358999999887 33321100000 001114


Q ss_pred             C-ccceeeeccCCCccccCCCCcchHHHHHHhcccccccCCCC-ccccEEEecCCCcce-----ecC-CCC-CCCccEEE
Q 048322          282 P-RLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSY-PRLCRLEVDECKELV-----CRT-PID-SKLIKFMT  352 (498)
Q Consensus       282 ~-~L~~L~l~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~~l-~~L~~L~l~~~~~~~-----~~~-~~~-~~~L~~L~  352 (498)
                      + +|++|++++| .+++..+.   .+..          .+... ++|++|++++|....     ++. ... .++|++|+
T Consensus       166 ~~~L~~L~Ls~n-~l~~~~~~---~l~~----------~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~  231 (362)
T 3goz_A          166 PANVNSLNLRGN-NLASKNCA---ELAK----------FLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLN  231 (362)
T ss_dssp             CTTCCEEECTTS-CGGGSCHH---HHHH----------HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEE
T ss_pred             CccccEeeecCC-CCchhhHH---HHHH----------HHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEE
Confidence            4 8999999988 44322111   1111          12223 488999999887544     111 111 46899999


Q ss_pred             EeccEeeeecCCCCccCCCCCCcCCCCCCCCCeEEecCC---------------CCCCCCCccEEEEcCCC
Q 048322          353 ISNSSLDMIGCKGMLYDSQAGSSLPKPMTTTNVLEFGKL---------------LEPGFQILETLVIGNSE  408 (498)
Q Consensus       353 l~~~~l~~~~~~~l~~~~~~l~~lp~~l~~L~~L~i~~~---------------~~~~lp~L~~L~l~~c~  408 (498)
                      +++|.+...+..       .+..+...+++|+.|++++|               ....+++|+.|++++++
T Consensus       232 Ls~N~l~~~~~~-------~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~  295 (362)
T 3goz_A          232 LCLNCLHGPSLE-------NLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE  295 (362)
T ss_dssp             CCSSCCCCCCHH-------HHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred             CcCCCCCcHHHH-------HHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence            988754432211       11112234478999999888               23456668888887754

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.72  E-value=4.9e-09  Score=88.59  Aligned_cols=107  Identities=19%  Similarity=0.288  Sum_probs=75.0

Q ss_pred             CCCCceEEEeecCCC--CCCccccCCCCCCccEEeEeCCCCCCCCCCCCCccccceeecccccccee-cCccccCCCCCC
Q 048322          173 HKCIKKVAIRNYGGA--RFPLWIGDPLFSKIEFLELENCNNCVSLPSLGLLSSLKHLAVKGLKKLKS-IESEVYGEGFSM  249 (498)
Q Consensus       173 ~~~L~~L~l~~~~~~--~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~i~~l~~L~~L~l~~~~~l~~-i~~~~~~~~~~~  249 (498)
                      +++|+.|+++++...  .+|..+.  .+++|++|++++| .+..++.++.+++|++|+++++. +.. +|..+.      
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~--~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~------   85 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTD--EFEELEFLSTINV-GLTSIANLPKLNKLKKLELSDNR-VSGGLEVLAE------   85 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCT--TCTTCCEEECTTS-CCCCCTTCCCCTTCCEEECCSSC-CCSCTHHHHH------
T ss_pred             CccCeEEEccCCcCChhHHHHHHh--hcCCCcEEECcCC-CCCCchhhhcCCCCCEEECCCCc-ccchHHHHhh------
Confidence            477888888888776  6777665  5888999998886 56666668888889999888854 544 443222      


Q ss_pred             CCCCCceeeccCCCcccccc-ccccCCccccCCCccceeeeccCCCcc
Q 048322          250 PFPSLKILRFENLPEWWHWD-TDIKGNVHVDIFPRLQELSVVKCPKLS  296 (498)
Q Consensus       250 ~~~~L~~L~l~~~~~l~~~~-~~~~~~~~~~~l~~L~~L~l~~c~~l~  296 (498)
                      .+++|++|+++++ .++.+. +...     ..+++|++|++++| .++
T Consensus        86 ~l~~L~~L~ls~N-~i~~~~~~~~~-----~~l~~L~~L~l~~N-~l~  126 (149)
T 2je0_A           86 KCPNLTHLNLSGN-KIKDLSTIEPL-----KKLENLKSLDLFNC-EVT  126 (149)
T ss_dssp             HCTTCCEEECTTS-CCCSHHHHGGG-----GGCTTCCEEECTTC-GGG
T ss_pred             hCCCCCEEECCCC-cCCChHHHHHH-----hhCCCCCEEeCcCC-ccc
Confidence            3788888888876 344432 1222     23888999999888 444

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.69  E-value=8.3e-08  Score=84.87  Aligned_cols=103  Identities=16%  Similarity=0.159  Sum_probs=69.9

Q ss_pred             CCcccEEEEecCCCCCCcChhhHHHhhhcCCCCCCCceEEEeecCCCCCCcc-ccCCCCCCccEEeEeCCCCCCCCCC--
Q 048322          141 LNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPLW-IGDPLFSKIEFLELENCNNCVSLPS--  217 (498)
Q Consensus       141 ~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~-~~~~~l~~L~~L~l~~c~~~~~lp~--  217 (498)
                      .+++.|+|+.+.-.          .+...+..+++|++|+++++....++.. +.  .+++|++|+|++| .+..+|+  
T Consensus        31 ~~l~~L~L~~n~i~----------~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~--~l~~L~~L~Ls~N-~l~~i~~~~   97 (193)
T 2wfh_A           31 RDVTELYLDGNQFT----------LVPKELSNYKHLTLIDLSNNRISTLSNQSFS--NMTQLLTLILSYN-RLRCIPPRT   97 (193)
T ss_dssp             TTCCEEECCSSCCC----------SCCGGGGGCTTCCEEECCSSCCCCCCTTTTT--TCTTCCEEECCSS-CCCBCCTTT
T ss_pred             CCCCEEECCCCcCc----------hhHHHhhcccCCCEEECCCCcCCEeCHhHcc--CCCCCCEEECCCC-ccCEeCHHH
Confidence            47888888766421          1223455568888888888887777643 44  5788888888885 5666664  


Q ss_pred             CCCccccceeeccccccceecCccccCCCCCCCCCCCceeeccCC
Q 048322          218 LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFENL  262 (498)
Q Consensus       218 i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~  262 (498)
                      ++.+++|++|+++++ .+..++...+.     .+++|+.|++.++
T Consensus        98 f~~l~~L~~L~L~~N-~l~~~~~~~~~-----~l~~L~~L~L~~N  136 (193)
T 2wfh_A           98 FDGLKSLRLLSLHGN-DISVVPEGAFN-----DLSALSHLAIGAN  136 (193)
T ss_dssp             TTTCTTCCEEECCSS-CCCBCCTTTTT-----TCTTCCEEECCSS
T ss_pred             hCCCCCCCEEECCCC-CCCeeChhhhh-----cCccccEEEeCCC
Confidence            788888888888874 56666665443     3666666666554

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.68  E-value=1.3e-08  Score=108.77  Aligned_cols=148  Identities=18%  Similarity=0.124  Sum_probs=100.1

Q ss_pred             hhcCCCCCCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCC-CCCccccceeeccccccceecCccccCC
Q 048322          167 LDILQPHKCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPS-LGLLSSLKHLAVKGLKKLKSIESEVYGE  245 (498)
Q Consensus       167 l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~-i~~l~~L~~L~l~~~~~l~~i~~~~~~~  245 (498)
                      .+.+..+.+|+.|+++++....+|..++  .+++|++|+|++| .+..+|. ++.+++|++|+|+++ .+..+|..+.. 
T Consensus       217 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~-  291 (727)
T 4b8c_D          217 KDSKYDDQLWHALDLSNLQIFNISANIF--KYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHN-RLTSLPAELGS-  291 (727)
T ss_dssp             -----CCCCCCEEECTTSCCSCCCGGGG--GCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTS-CCSSCCSSGGG-
T ss_pred             hhhhccCCCCcEEECCCCCCCCCChhhc--CCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCC-cCCccChhhcC-
Confidence            3445667899999999999999998877  5999999999996 5668997 999999999999996 47788876654 


Q ss_pred             CCCCCCCCCceeeccCCCccccccccccCCccccCCCccceeeeccCCCccccCCCCcchHHH--H--HHhcccccccCC
Q 048322          246 GFSMPFPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPSLEI--L--VSKCEKLVVSLS  321 (498)
Q Consensus       246 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~--L--i~~~~~l~~~~~  321 (498)
                           +++|++|+++++ .+..++.. .+     .+++|+.|+|++| .+.+.+|..+..+..  +  ....+.+...+|
T Consensus       292 -----l~~L~~L~L~~N-~l~~lp~~-~~-----~l~~L~~L~L~~N-~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p  358 (727)
T 4b8c_D          292 -----CFQLKYFYFFDN-MVTTLPWE-FG-----NLCNLQFLGVEGN-PLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP  358 (727)
T ss_dssp             -----GTTCSEEECCSS-CCCCCCSS-TT-----SCTTCCCEECTTS-CCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_pred             -----CCCCCEEECCCC-CCCccChh-hh-----cCCCccEEeCCCC-ccCCCChHHHhhcchhhhHHhhccCcccCcCc
Confidence                 899999999987 55554432 23     3899999999998 455566665544322  2  122233433333


Q ss_pred             CCccccEEEecCC
Q 048322          322 SYPRLCRLEVDEC  334 (498)
Q Consensus       322 ~l~~L~~L~l~~~  334 (498)
                        ..|..|+++.+
T Consensus       359 --~~l~~l~l~~n  369 (727)
T 4b8c_D          359 --HERRFIEINTD  369 (727)
T ss_dssp             --CC---------
T ss_pred             --cccceeEeecc
Confidence              46677777665

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.63  E-value=3.5e-07  Score=88.15  Aligned_cols=68  Identities=10%  Similarity=0.004  Sum_probs=41.5

Q ss_pred             CCCCeEEecCC-------CCCCCCCcc-EEEEcCCCCCCCccccCCCCccCCCCCCcCeEeeecCCCCCcCCCCCc--cc
Q 048322          381 TTTNVLEFGKL-------LEPGFQILE-TLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPNLTLFPEVGL--PS  450 (498)
Q Consensus       381 ~~L~~L~i~~~-------~~~~lp~L~-~L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~~l~~lp~~~~--~~  450 (498)
                      .+|+.|.+.++       .+.++++|+ .+.+.+  +++.+.     +..+.++++|++|++.+ +.++.++...+  .+
T Consensus       250 ~~L~~l~l~~ni~~I~~~aF~~~~~L~~~l~l~~--~l~~I~-----~~aF~~c~~L~~l~l~~-n~i~~I~~~aF~~~~  321 (329)
T 3sb4_A          250 KYLLKIKLPHNLKTIGQRVFSNCGRLAGTLELPA--SVTAIE-----FGAFMGCDNLRYVLATG-DKITTLGDELFGNGV  321 (329)
T ss_dssp             TTCCEEECCTTCCEECTTTTTTCTTCCEEEEECT--TCCEEC-----TTTTTTCTTEEEEEECS-SCCCEECTTTTCTTC
T ss_pred             CCCCEEECCcccceehHHHhhCChhccEEEEEcc--cceEEc-----hhhhhCCccCCEEEeCC-CccCccchhhhcCCc
Confidence            44555555544       455667787 888865  444331     45677888888888866 47777776433  24


Q ss_pred             ccccee
Q 048322          451 SLLDLY  456 (498)
Q Consensus       451 sL~~L~  456 (498)
                      +|+.++
T Consensus       322 ~L~~ly  327 (329)
T 3sb4_A          322 PSKLIY  327 (329)
T ss_dssp             CCCEEE
T ss_pred             chhhhc
Confidence            555443

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.62  E-value=3.4e-07  Score=79.61  Aligned_cols=105  Identities=19%  Similarity=0.234  Sum_probs=56.1

Q ss_pred             CCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCC--CCCccccceeeccccccceecCccccCCCCCCCC
Q 048322          174 KCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPS--LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPF  251 (498)
Q Consensus       174 ~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~--i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~  251 (498)
                      ++|++|+++++....+|..... .+++|++|++++| .++.+|+  ++.+++|++|+++++ .++.++...++     .+
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~-----~l   99 (177)
T 2o6r_A           28 SSATRLELESNKLQSLPHGVFD-KLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHEN-KLQSLPNGVFD-----KL   99 (177)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTT-TCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTT-----TC
T ss_pred             CCCcEEEeCCCcccEeCHHHhc-CcccccEEECCCC-cceEeChhHccCCCccCEEECCCC-CccccCHHHhh-----CC
Confidence            4666666666665555543211 3566666666664 4455554  456666666666663 35555544332     35


Q ss_pred             CCCceeeccCCCccccccccccCCccccCCCccceeeeccC
Q 048322          252 PSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKC  292 (498)
Q Consensus       252 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c  292 (498)
                      ++|++|+++++ .++.+.+.....     +++|++|+++++
T Consensus       100 ~~L~~L~l~~N-~l~~~~~~~~~~-----l~~L~~L~l~~N  134 (177)
T 2o6r_A          100 TQLKELALDTN-QLKSVPDGIFDR-----LTSLQKIWLHTN  134 (177)
T ss_dssp             TTCCEEECCSS-CCSCCCTTTTTT-----CTTCCEEECCSS
T ss_pred             cccCEEECcCC-cceEeCHHHhcC-----CcccCEEEecCC
Confidence            66666666554 334333222122     566666666655

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.58  E-value=1.2e-08  Score=109.16  Aligned_cols=33  Identities=18%  Similarity=0.173  Sum_probs=15.1

Q ss_pred             CCCccEEeEeCCCCCCCCCC-CCCccccceeeccc
Q 048322          198 FSKIEFLELENCNNCVSLPS-LGLLSSLKHLAVKG  231 (498)
Q Consensus       198 l~~L~~L~l~~c~~~~~lp~-i~~l~~L~~L~l~~  231 (498)
                      +++|+.|+|++| .+..+|. ++.+++|++|+|++
T Consensus       223 l~~L~~L~Ls~n-~l~~l~~~~~~l~~L~~L~Ls~  256 (727)
T 4b8c_D          223 DQLWHALDLSNL-QIFNISANIFKYDFLTRLYLNG  256 (727)
T ss_dssp             CCCCCEEECTTS-CCSCCCGGGGGCCSCSCCBCTT
T ss_pred             CCCCcEEECCCC-CCCCCChhhcCCCCCCEEEeeC
Confidence            444555555443 2334443 44444455555544

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.57  E-value=1.3e-08  Score=85.98  Aligned_cols=129  Identities=19%  Similarity=0.228  Sum_probs=91.2

Q ss_pred             ccCCcccEEEEecCCCCCCcChhhHHHhhhcCCCCCCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCC-
Q 048322          139 EKLNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPS-  217 (498)
Q Consensus       139 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~-  217 (498)
                      ...+++.|+++.+.-.        ...+...+..+++|++|+++++....+ ..+.  .+++|++|++++|.....+|. 
T Consensus        15 ~~~~l~~L~l~~n~l~--------~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~--~l~~L~~L~Ls~n~i~~~~~~~   83 (149)
T 2je0_A           15 TPSDVKELVLDNSRSN--------EGKLEGLTDEFEELEFLSTINVGLTSI-ANLP--KLNKLKKLELSDNRVSGGLEVL   83 (149)
T ss_dssp             CGGGCSEEECTTCBCB--------TTBCCSCCTTCTTCCEEECTTSCCCCC-TTCC--CCTTCCEEECCSSCCCSCTHHH
T ss_pred             CCccCeEEEccCCcCC--------hhHHHHHHhhcCCCcEEECcCCCCCCc-hhhh--cCCCCCEEECCCCcccchHHHH
Confidence            4578999999776421        012344456779999999999987777 4455  589999999999754444776 


Q ss_pred             CCCccccceeeccccccceecC--ccccCCCCCCCCCCCceeeccCCCccccccc---cccCCccccCCCccceeeecc
Q 048322          218 LGLLSSLKHLAVKGLKKLKSIE--SEVYGEGFSMPFPSLKILRFENLPEWWHWDT---DIKGNVHVDIFPRLQELSVVK  291 (498)
Q Consensus       218 i~~l~~L~~L~l~~~~~l~~i~--~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~---~~~~~~~~~~l~~L~~L~l~~  291 (498)
                      ++.+++|++|+++++. ++.++  ..+      ..+++|++|+++++ .+..+.+   ..     +..+++|+.|++++
T Consensus        84 ~~~l~~L~~L~ls~N~-i~~~~~~~~~------~~l~~L~~L~l~~N-~l~~~~~~~~~~-----~~~l~~L~~L~l~d  149 (149)
T 2je0_A           84 AEKCPNLTHLNLSGNK-IKDLSTIEPL------KKLENLKSLDLFNC-EVTNLNDYRENV-----FKLLPQLTYLDGYD  149 (149)
T ss_dssp             HHHCTTCCEEECTTSC-CCSHHHHGGG------GGCTTCCEEECTTC-GGGGSTTHHHHH-----HHHCTTCCEETTBC
T ss_pred             hhhCCCCCEEECCCCc-CCChHHHHHH------hhCCCCCEEeCcCC-cccchHHHHHHH-----HHHCCCcccccCCC
Confidence            6679999999999864 66654  333      24899999999987 4444432   12     22388999998763

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.56  E-value=3e-07  Score=81.19  Aligned_cols=105  Identities=16%  Similarity=0.183  Sum_probs=81.3

Q ss_pred             CCCceEEEeecCCCCCCcc--ccCCCCCCccEEeEeCCCCCCCC-CC-CCCccccceeeccccccceecCccccCCCCCC
Q 048322          174 KCIKKVAIRNYGGARFPLW--IGDPLFSKIEFLELENCNNCVSL-PS-LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSM  249 (498)
Q Consensus       174 ~~L~~L~l~~~~~~~~p~~--~~~~~l~~L~~L~l~~c~~~~~l-p~-i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~  249 (498)
                      .++++|+++++....+|..  +.  .+++|++|+|++|. ++.+ |. ++.+++|++|+++++ .++.++...+.     
T Consensus        29 ~~l~~L~l~~n~i~~~~~~~~~~--~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~-----   99 (192)
T 1w8a_A           29 LHTTELLLNDNELGRISSDGLFG--RLPHLVKLELKRNQ-LTGIEPNAFEGASHIQELQLGEN-KIKEISNKMFL-----   99 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGG--GCTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSC-CCCEECSSSST-----
T ss_pred             CCCCEEECCCCcCCccCCccccc--cCCCCCEEECCCCC-CCCcCHhHcCCcccCCEEECCCC-cCCccCHHHhc-----
Confidence            4899999999988877653  55  68999999999964 5555 54 899999999999985 57777766443     


Q ss_pred             CCCCCceeeccCCCccccccccccCCccccCCCccceeeeccCC
Q 048322          250 PFPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCP  293 (498)
Q Consensus       250 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~  293 (498)
                      .+++|++|+++++ .+....+.....     +++|++|++++++
T Consensus       100 ~l~~L~~L~L~~N-~l~~~~~~~~~~-----l~~L~~L~L~~N~  137 (192)
T 1w8a_A          100 GLHQLKTLNLYDN-QISCVMPGSFEH-----LNSLTSLNLASNP  137 (192)
T ss_dssp             TCTTCCEEECCSS-CCCEECTTSSTT-----CTTCCEEECTTCC
T ss_pred             CCCCCCEEECCCC-cCCeeCHHHhhc-----CCCCCEEEeCCCC
Confidence            5899999999887 555554333333     8999999999884

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.55  E-value=3.8e-07  Score=79.24  Aligned_cols=105  Identities=21%  Similarity=0.255  Sum_probs=70.8

Q ss_pred             CCcccEEEEecCCCCCCcChhhHHHhhhcCCCCCCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCC--C
Q 048322          141 LNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPS--L  218 (498)
Q Consensus       141 ~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~--i  218 (498)
                      .+|+.|+++.+.-. ..        ....+..+++|++|+++++....+|..... .+++|++|++++| .++.+|+  +
T Consensus        28 ~~l~~L~l~~n~l~-~~--------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~N-~l~~~~~~~~   96 (177)
T 2o6r_A           28 SSATRLELESNKLQ-SL--------PHGVFDKLTQLTKLSLSQNQIQSLPDGVFD-KLTKLTILYLHEN-KLQSLPNGVF   96 (177)
T ss_dssp             TTCSEEECCSSCCC-CC--------CTTTTTTCTTCSEEECCSSCCCCCCTTTTT-TCTTCCEEECCSS-CCCCCCTTTT
T ss_pred             CCCcEEEeCCCccc-Ee--------CHHHhcCcccccEEECCCCcceEeChhHcc-CCCccCEEECCCC-CccccCHHHh
Confidence            57888888766421 00        012234567888888888887777654321 5788888888885 5666665  6


Q ss_pred             CCccccceeeccccccceecCccccCCCCCCCCCCCceeeccCC
Q 048322          219 GLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFENL  262 (498)
Q Consensus       219 ~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~  262 (498)
                      +.+++|++|+++++ .++.++...+.     .+++|++|++.++
T Consensus        97 ~~l~~L~~L~l~~N-~l~~~~~~~~~-----~l~~L~~L~l~~N  134 (177)
T 2o6r_A           97 DKLTQLKELALDTN-QLKSVPDGIFD-----RLTSLQKIWLHTN  134 (177)
T ss_dssp             TTCTTCCEEECCSS-CCSCCCTTTTT-----TCTTCCEEECCSS
T ss_pred             hCCcccCEEECcCC-cceEeCHHHhc-----CCcccCEEEecCC
Confidence            77888888888875 56777765443     4788888888766

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.53  E-value=1.2e-07  Score=98.31  Aligned_cols=108  Identities=18%  Similarity=0.163  Sum_probs=83.6

Q ss_pred             CCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCC-CCCccccceeeccccccceecCccccCCCCCCCCC
Q 048322          174 KCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPS-LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFP  252 (498)
Q Consensus       174 ~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~-i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~  252 (498)
                      ..|++|+++++....+|. ++  .+++|+.|+|++| .++.+|. ++.+++|+.|+++++ .++.+| .+.      .++
T Consensus       441 ~~L~~L~Ls~n~l~~lp~-~~--~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp-~l~------~l~  508 (567)
T 1dce_A          441 ADVRVLHLAHKDLTVLCH-LE--QLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDN-ALENVD-GVA------NLP  508 (567)
T ss_dssp             TTCSEEECTTSCCSSCCC-GG--GGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSS-CCCCCG-GGT------TCS
T ss_pred             cCceEEEecCCCCCCCcC-cc--ccccCcEeecCcc-cccccchhhhcCCCCCEEECCCC-CCCCCc-ccC------CCC
Confidence            468999999999888887 66  5899999999996 5678887 999999999999985 577776 333      489


Q ss_pred             CCceeeccCCCcccccc-ccccCCccccCCCccceeeeccCCCccccCCC
Q 048322          253 SLKILRFENLPEWWHWD-TDIKGNVHVDIFPRLQELSVVKCPKLSGKLPE  301 (498)
Q Consensus       253 ~L~~L~l~~~~~l~~~~-~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~  301 (498)
                      +|+.|+++++ .++.+. +...     ..+++|+.|++++| .++ .+|.
T Consensus       509 ~L~~L~Ls~N-~l~~~~~p~~l-----~~l~~L~~L~L~~N-~l~-~~~~  550 (567)
T 1dce_A          509 RLQELLLCNN-RLQQSAAIQPL-----VSCPRLVLLNLQGN-SLC-QEEG  550 (567)
T ss_dssp             SCCEEECCSS-CCCSSSTTGGG-----GGCTTCCEEECTTS-GGG-GSSS
T ss_pred             CCcEEECCCC-CCCCCCCcHHH-----hcCCCCCEEEecCC-cCC-CCcc
Confidence            9999999887 555553 3322     23899999999988 454 4443

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.50  E-value=9.9e-08  Score=82.98  Aligned_cols=128  Identities=14%  Similarity=0.144  Sum_probs=84.8

Q ss_pred             CCCCccEEeEeCCCCCCCCCCCCCcc-ccceeeccccccceecCccccCCCCCCCCCCCceeeccCCCccccccccccCC
Q 048322          197 LFSKIEFLELENCNNCVSLPSLGLLS-SLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFENLPEWWHWDTDIKGN  275 (498)
Q Consensus       197 ~l~~L~~L~l~~c~~~~~lp~i~~l~-~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~  275 (498)
                      .+.+|+.|++++| .+..+|.+..+. +|++|+++++ .++.+ ..+      ..+++|++|+++++ .++.+.++... 
T Consensus        17 ~~~~L~~L~l~~n-~l~~i~~~~~~~~~L~~L~Ls~N-~l~~~-~~l------~~l~~L~~L~Ls~N-~l~~~~~~~~~-   85 (176)
T 1a9n_A           17 NAVRDRELDLRGY-KIPVIENLGATLDQFDAIDFSDN-EIRKL-DGF------PLLRRLKTLLVNNN-RICRIGEGLDQ-   85 (176)
T ss_dssp             CTTSCEEEECTTS-CCCSCCCGGGGTTCCSEEECCSS-CCCEE-CCC------CCCSSCCEEECCSS-CCCEECSCHHH-
T ss_pred             CcCCceEEEeeCC-CCchhHHhhhcCCCCCEEECCCC-CCCcc-ccc------ccCCCCCEEECCCC-cccccCcchhh-
Confidence            3788999999997 667888776665 9999999986 46666 222      34888888888876 45544332212 


Q ss_pred             ccccCCCccceeeeccCCCccccCCCCcchHHHHHHhcccccccCCCCccccEEEecCCCcceecC-----CCCCCCccE
Q 048322          276 VHVDIFPRLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSYPRLCRLEVDECKELVCRT-----PIDSKLIKF  350 (498)
Q Consensus       276 ~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~-----~~~~~~L~~  350 (498)
                          .+++|+.|++++| .+. .+|.               ...+..+++|+.|++++|.....+.     ...+++|+.
T Consensus        86 ----~l~~L~~L~L~~N-~i~-~~~~---------------~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~  144 (176)
T 1a9n_A           86 ----ALPDLTELILTNN-SLV-ELGD---------------LDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRV  144 (176)
T ss_dssp             ----HCTTCCEEECCSC-CCC-CGGG---------------GGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSE
T ss_pred             ----cCCCCCEEECCCC-cCC-cchh---------------hHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccce
Confidence                2788888888887 343 4432               0033456778888888887655443     223666777


Q ss_pred             EEEecc
Q 048322          351 MTISNS  356 (498)
Q Consensus       351 L~l~~~  356 (498)
                      |++++|
T Consensus       145 Ld~~~n  150 (176)
T 1a9n_A          145 LDFQKV  150 (176)
T ss_dssp             ETTEEC
T ss_pred             eCCCcC
Confidence            666655

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.47  E-value=8.3e-07  Score=76.91  Aligned_cols=115  Identities=19%  Similarity=0.143  Sum_probs=82.0

Q ss_pred             CceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCC--CCCccccceeeccccccceecCccccCCCCCCCCCC
Q 048322          176 IKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPS--LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPS  253 (498)
Q Consensus       176 L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~--i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~  253 (498)
                      -+.+++++++...+|..+.    ++|++|+|++| .+..+++  ++.+++|++|+++++ .++.++...+.     .+++
T Consensus        14 ~~~l~~~~n~l~~iP~~~~----~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~-----~l~~   82 (174)
T 2r9u_A           14 QTLVNCQNIRLASVPAGIP----TDKQRLWLNNN-QITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFD-----KLTQ   82 (174)
T ss_dssp             SSEEECCSSCCSSCCSCCC----TTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTT-----TCTT
T ss_pred             CcEEEeCCCCCCccCCCcC----CCCcEEEeCCC-CccccCHHHhcCCcCCCEEECCCC-CCCccChhHhC-----Ccch
Confidence            4678888888888887553    68899999986 5666644  888999999999885 68888876553     4889


Q ss_pred             CceeeccCCCccccccccccCCccccCCCccceeeeccCCCccccCCCCcchHHHH
Q 048322          254 LKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPSLEIL  309 (498)
Q Consensus       254 L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~L  309 (498)
                      |+.|+++++ .++.+.++....     +++|+.|++++++ +. ..+..+..|+..
T Consensus        83 L~~L~L~~N-~l~~l~~~~~~~-----l~~L~~L~L~~N~-~~-c~~~~~~~l~~~  130 (174)
T 2r9u_A           83 LTQLDLNDN-HLKSIPRGAFDN-----LKSLTHIYLYNNP-WD-CECRDIMYLRNW  130 (174)
T ss_dssp             CCEEECCSS-CCCCCCTTTTTT-----CTTCSEEECCSSC-BC-TTBGGGHHHHHH
T ss_pred             hhEEECCCC-ccceeCHHHhcc-----ccCCCEEEeCCCC-cc-cccccHHHHHHH
Confidence            999999876 555554332333     8999999999884 33 444334445444

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.42  E-value=8.8e-07  Score=76.44  Aligned_cols=102  Identities=17%  Similarity=0.182  Sum_probs=75.4

Q ss_pred             CCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCC--CCCccccceeeccccccceecCccccCCCCCCCCC
Q 048322          175 CIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPS--LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFP  252 (498)
Q Consensus       175 ~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~--i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~  252 (498)
                      ..+.|++++++...+|..+    .++|++|+|++| .+..+++  ++.+++|++|+++++ .++.++...+.     .++
T Consensus        10 ~~~~l~~s~n~l~~ip~~~----~~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~-----~l~   78 (170)
T 3g39_A           10 SGTTVDCSGKSLASVPTGI----PTTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFD-----KLT   78 (170)
T ss_dssp             ETTEEECTTSCCSSCCSCC----CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTT-----TCT
T ss_pred             CCCEEEeCCCCcCccCccC----CCCCcEEEcCCC-cCCccChhhhcCcccCCEEECCCC-CcCccChhhcc-----CCC
Confidence            3567888888888888655    367889999885 5666643  888899999999885 57788776554     488


Q ss_pred             CCceeeccCCCccccccccccCCccccCCCccceeeeccCC
Q 048322          253 SLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCP  293 (498)
Q Consensus       253 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~  293 (498)
                      +|++|+++++ .++.+.++....     +++|+.|++++++
T Consensus        79 ~L~~L~L~~N-~l~~~~~~~~~~-----l~~L~~L~L~~N~  113 (170)
T 3g39_A           79 QLTQLSLNDN-QLKSIPRGAFDN-----LKSLTHIWLLNNP  113 (170)
T ss_dssp             TCCEEECCSS-CCCCCCTTTTTT-----CTTCCEEECCSSC
T ss_pred             CCCEEECCCC-ccCEeCHHHhcC-----CCCCCEEEeCCCC
Confidence            8999999876 555555433333     8899999999874

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.22  E-value=0.0001  Score=72.64  Aligned_cols=204  Identities=9%  Similarity=0.101  Sum_probs=105.8

Q ss_pred             CccEEeEeCCCCCCCCCC--CCCccccceeeccccccceecCccccCCCCCCCCCCCceeeccCCCccccccccccCCcc
Q 048322          200 KIEFLELENCNNCVSLPS--LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFENLPEWWHWDTDIKGNVH  277 (498)
Q Consensus       200 ~L~~L~l~~c~~~~~lp~--i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~  277 (498)
                      +|+.+.+.+  .+..++.  +..+++|+.+.+.+ +.++.++...|.      ..+|+.+.+.+  +++.+....     
T Consensus       158 ~L~~i~lp~--~l~~I~~~aF~~c~~L~~l~l~~-n~l~~I~~~aF~------~~~L~~l~lp~--~l~~I~~~a-----  221 (401)
T 4fdw_A          158 TVQEIVFPS--TLEQLKEDIFYYCYNLKKADLSK-TKITKLPASTFV------YAGIEEVLLPV--TLKEIGSQA-----  221 (401)
T ss_dssp             CCCEEECCT--TCCEECSSTTTTCTTCCEEECTT-SCCSEECTTTTT------TCCCSEEECCT--TCCEECTTT-----
T ss_pred             CceEEEeCC--CccEehHHHhhCcccCCeeecCC-CcceEechhhEe------ecccCEEEeCC--chheehhhH-----
Confidence            466666653  4555553  55666666666655 346666655553      35666666642  233333211     


Q ss_pred             ccCCCccceeeeccCCCccccCCCCcchHHHHHHhcccccccCCCCccccEEEecCCCcceec--CCCCCCCccEEEEec
Q 048322          278 VDIFPRLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSYPRLCRLEVDECKELVCR--TPIDSKLIKFMTISN  355 (498)
Q Consensus       278 ~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~  355 (498)
                      +..+++|+.+.+.+  +++ .++..                .+.. .+|+.+.+.+. ...++  ....+++|+.+.+.+
T Consensus       222 F~~~~~L~~l~l~~--~l~-~I~~~----------------aF~~-~~L~~i~lp~~-i~~I~~~aF~~c~~L~~l~l~~  280 (401)
T 4fdw_A          222 FLKTSQLKTIEIPE--NVS-TIGQE----------------AFRE-SGITTVKLPNG-VTNIASRAFYYCPELAEVTTYG  280 (401)
T ss_dssp             TTTCTTCCCEECCT--TCC-EECTT----------------TTTT-CCCSEEEEETT-CCEECTTTTTTCTTCCEEEEES
T ss_pred             hhCCCCCCEEecCC--Ccc-Ccccc----------------cccc-CCccEEEeCCC-ccEEChhHhhCCCCCCEEEeCC
Confidence            11256666666654  232 33321                2222 46677776432 22222  222367788887766


Q ss_pred             cEeeeecCCCCccCCCCCCcCC----CCCCCCCeEEecCC-------CCCCCCCccEEEEcCCCCCCCccccCCCCccCC
Q 048322          356 SSLDMIGCKGMLYDSQAGSSLP----KPMTTTNVLEFGKL-------LEPGFQILETLVIGNSEQLKPWRQGRGLSMGFQ  424 (498)
Q Consensus       356 ~~l~~~~~~~l~~~~~~l~~lp----~~l~~L~~L~i~~~-------~~~~lp~L~~L~l~~c~~L~~l~~l~~l~~~l~  424 (498)
                      +.....          ....++    .+.++|+.+.+.+.       .+.++++|+.+.|..  +++.+.     +..+.
T Consensus       281 ~~~~~~----------~~~~I~~~aF~~c~~L~~l~l~~~i~~I~~~aF~~c~~L~~l~lp~--~l~~I~-----~~aF~  343 (401)
T 4fdw_A          281 STFNDD----------PEAMIHPYCLEGCPKLARFEIPESIRILGQGLLGGNRKVTQLTIPA--NVTQIN-----FSAFN  343 (401)
T ss_dssp             SCCCCC----------TTCEECTTTTTTCTTCCEECCCTTCCEECTTTTTTCCSCCEEEECT--TCCEEC-----TTSSS
T ss_pred             ccccCC----------cccEECHHHhhCCccCCeEEeCCceEEEhhhhhcCCCCccEEEECc--cccEEc-----HHhCC
Confidence            532200          000111    11144555555433       456677788888843  344321     44577


Q ss_pred             CCCCcCeEeeecCCCCCcCCCC---Cccccccceeecc
Q 048322          425 RLTSLQSLKIWNCPNLTLFPEV---GLPSSLLDLYVNN  459 (498)
Q Consensus       425 ~l~~L~~L~l~~c~~l~~lp~~---~~~~sL~~L~i~~  459 (498)
                      ++ +|+.+.+.++ .+..++..   +++.+++.|++-.
T Consensus       344 ~~-~L~~l~l~~n-~~~~l~~~~F~~~~~~l~~l~vp~  379 (401)
T 4fdw_A          344 NT-GIKEVKVEGT-TPPQVFEKVWYGFPDDITVIRVPA  379 (401)
T ss_dssp             SS-CCCEEEECCS-SCCBCCCSSCCCSCTTCCEEEECG
T ss_pred             CC-CCCEEEEcCC-CCcccccccccCCCCCccEEEeCH
Confidence            77 8999999874 55555543   3445777777754

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.11  E-value=6.8e-06  Score=79.63  Aligned_cols=99  Identities=16%  Similarity=0.093  Sum_probs=69.6

Q ss_pred             eEEEeec-CCCCCCccccCCCCCCccEEeEeCCCCCCCCCC--CCCccccceeeccccccceecCccccCCCCCCCCCCC
Q 048322          178 KVAIRNY-GGARFPLWIGDPLFSKIEFLELENCNNCVSLPS--LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSL  254 (498)
Q Consensus       178 ~L~l~~~-~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~--i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L  254 (498)
                      .++.++. +...+|. +.  .+++|+.|+|++++.+..+|+  ++.+++|++|+|+++ .+..++...++     .+++|
T Consensus        12 ~v~~~~~n~l~~ip~-l~--~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~-----~l~~L   82 (347)
T 2ifg_A           12 GLRCTRDGALDSLHH-LP--GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFH-----FTPRL   82 (347)
T ss_dssp             CEECCSSCCCTTTTT-SC--SCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGG-----SCSCC
T ss_pred             EEEcCCCCCCCccCC-CC--CCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHhc-----CCcCC
Confidence            4566666 6777887 66  577888888886457777775  888888888888885 57777765554     48888


Q ss_pred             ceeeccCCCccccccccccCCccccCCCccceeeeccC
Q 048322          255 KILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKC  292 (498)
Q Consensus       255 ~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c  292 (498)
                      +.|+|+++ .+..+.++....     ++ |+.|++.++
T Consensus        83 ~~L~l~~N-~l~~~~~~~~~~-----~~-L~~l~l~~N  113 (347)
T 2ifg_A           83 SRLNLSFN-ALESLSWKTVQG-----LS-LQELVLSGN  113 (347)
T ss_dssp             CEEECCSS-CCSCCCSTTTCS-----CC-CCEEECCSS
T ss_pred             CEEeCCCC-ccceeCHHHccc-----CC-ceEEEeeCC
Confidence            88888776 555554332221     33 888888876

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.10  E-value=7.8e-06  Score=70.70  Aligned_cols=81  Identities=19%  Similarity=0.278  Sum_probs=64.5

Q ss_pred             CCCceEEEeecCCCCC-CccccCCCCCCccEEeEeCCCCCCCCCC--CCCccccceeeccccccceecCccccCCCCCCC
Q 048322          174 KCIKKVAIRNYGGARF-PLWIGDPLFSKIEFLELENCNNCVSLPS--LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMP  250 (498)
Q Consensus       174 ~~L~~L~l~~~~~~~~-p~~~~~~~l~~L~~L~l~~c~~~~~lp~--i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~  250 (498)
                      ++|++|+++++....+ |..+.  .+++|++|+|++| .+..+|+  ++.+++|++|+++++ .+..++...++     .
T Consensus        33 ~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~-----~  103 (174)
T 2r9u_A           33 TDKQRLWLNNNQITKLEPGVFD--HLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDN-HLKSIPRGAFD-----N  103 (174)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTT--TCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTT-----T
T ss_pred             CCCcEEEeCCCCccccCHHHhc--CCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCC-ccceeCHHHhc-----c
Confidence            7889999999988877 44555  5889999999986 6777876  688999999999884 67888776443     5


Q ss_pred             CCCCceeeccCCC
Q 048322          251 FPSLKILRFENLP  263 (498)
Q Consensus       251 ~~~L~~L~l~~~~  263 (498)
                      +++|+.|++.+++
T Consensus       104 l~~L~~L~L~~N~  116 (174)
T 2r9u_A          104 LKSLTHIYLYNNP  116 (174)
T ss_dssp             CTTCSEEECCSSC
T ss_pred             ccCCCEEEeCCCC
Confidence            8899999998763

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.09  E-value=8.5e-06  Score=70.15  Aligned_cols=80  Identities=20%  Similarity=0.296  Sum_probs=65.6

Q ss_pred             CCCceEEEeecCCCCC-CccccCCCCCCccEEeEeCCCCCCCCCC--CCCccccceeeccccccceecCccccCCCCCCC
Q 048322          174 KCIKKVAIRNYGGARF-PLWIGDPLFSKIEFLELENCNNCVSLPS--LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMP  250 (498)
Q Consensus       174 ~~L~~L~l~~~~~~~~-p~~~~~~~l~~L~~L~l~~c~~~~~lp~--i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~  250 (498)
                      .+|++|+++++....+ |..+.  .+++|++|+|++| .+..+|+  ++.+++|++|+++++ .++.++...++     .
T Consensus        30 ~~l~~L~L~~N~i~~~~~~~~~--~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~-----~  100 (170)
T 3g39_A           30 TTTQVLYLYDNQITKLEPGVFD--RLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLNDN-QLKSIPRGAFD-----N  100 (170)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTT--TCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTT-----T
T ss_pred             CCCcEEEcCCCcCCccChhhhc--CcccCCEEECCCC-CcCccChhhccCCCCCCEEECCCC-ccCEeCHHHhc-----C
Confidence            7899999999998887 44555  5899999999986 6777876  688999999999985 68888876554     5


Q ss_pred             CCCCceeeccCC
Q 048322          251 FPSLKILRFENL  262 (498)
Q Consensus       251 ~~~L~~L~l~~~  262 (498)
                      +++|+.|+++++
T Consensus       101 l~~L~~L~L~~N  112 (170)
T 3g39_A          101 LKSLTHIWLLNN  112 (170)
T ss_dssp             CTTCCEEECCSS
T ss_pred             CCCCCEEEeCCC
Confidence            889999999876

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.08  E-value=2.6e-05  Score=74.89  Aligned_cols=89  Identities=10%  Similarity=0.101  Sum_probs=61.5

Q ss_pred             CccccEEEecCCCcceecCC--CCCCCccEEEEeccEeeeecCCCCccCCCCCCcCCC----CCCCCC-eEEecCC----
Q 048322          323 YPRLCRLEVDECKELVCRTP--IDSKLIKFMTISNSSLDMIGCKGMLYDSQAGSSLPK----PMTTTN-VLEFGKL----  391 (498)
Q Consensus       323 l~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~l~~lp~----~l~~L~-~L~i~~~----  391 (498)
                      +++|+.+++.++....++..  ..+++|+.+++.++                ++.++.    +.++|+ .+.+.+.    
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n----------------i~~I~~~aF~~~~~L~~~l~l~~~l~~I  288 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN----------------LKTIGQRVFSNCGRLAGTLELPASVTAI  288 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT----------------CCEECTTTTTTCTTCCEEEEECTTCCEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc----------------cceehHHHhhCChhccEEEEEcccceEE
Confidence            57899999998876666543  34789999999764                222322    225677 7777655    


Q ss_pred             ---CCCCCCCccEEEEcCCCCCCCccccCCCCccCCCCCCcCeEe
Q 048322          392 ---LEPGFQILETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLK  433 (498)
Q Consensus       392 ---~~~~lp~L~~L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~  433 (498)
                         .+.++++|+.+++.+ +.++.+.     +..+.++++|+.+.
T Consensus       289 ~~~aF~~c~~L~~l~l~~-n~i~~I~-----~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          289 EFGAFMGCDNLRYVLATG-DKITTLG-----DELFGNGVPSKLIY  327 (329)
T ss_dssp             CTTTTTTCTTEEEEEECS-SCCCEEC-----TTTTCTTCCCCEEE
T ss_pred             chhhhhCCccCCEEEeCC-CccCccc-----hhhhcCCcchhhhc
Confidence               567788899999866 4454331     44678888898876

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=97.98  E-value=1.1e-07  Score=84.41  Aligned_cols=55  Identities=13%  Similarity=0.090  Sum_probs=25.1

Q ss_pred             CCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCCCCCccccceeeccc
Q 048322          174 KCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPSLGLLSSLKHLAVKG  231 (498)
Q Consensus       174 ~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~i~~l~~L~~L~l~~  231 (498)
                      ++|++|+++++....+|..+.  .+++|++|++++| .+..+|.++.+++|++|++++
T Consensus        70 ~~L~~L~l~~n~l~~l~~~~~--~~~~L~~L~L~~N-~l~~l~~~~~l~~L~~L~l~~  124 (198)
T 1ds9_A           70 ENLRILSLGRNLIKKIENLDA--VADTLEELWISYN-QIASLSGIEKLVNLRVLYMSN  124 (198)
T ss_dssp             TTCCEEEEEEEEECSCSSHHH--HHHHCSEEEEEEE-ECCCHHHHHHHHHSSEEEESE
T ss_pred             CCCCEEECCCCCcccccchhh--cCCcCCEEECcCC-cCCcCCccccCCCCCEEECCC
Confidence            445555555544444444333  2344555555443 333344444444455554444

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=97.98  E-value=4.9e-08  Score=86.73  Aligned_cols=106  Identities=16%  Similarity=0.256  Sum_probs=80.9

Q ss_pred             CCCCCCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCC-CCCccccceeeccccccceecCccccCCCCC
Q 048322          170 LQPHKCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPS-LGLLSSLKHLAVKGLKKLKSIESEVYGEGFS  248 (498)
Q Consensus       170 l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~-i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~  248 (498)
                      +..+++|++|+++++....+| .+.  .+++|++|++++| .+..+|. ++.+++|++|+++++ .+..++ .+.     
T Consensus        44 ~~~l~~L~~L~ls~n~l~~l~-~~~--~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L~~N-~l~~l~-~~~-----  112 (198)
T 1ds9_A           44 LSTLKACKHLALSTNNIEKIS-SLS--GMENLRILSLGRN-LIKKIENLDAVADTLEELWISYN-QIASLS-GIE-----  112 (198)
T ss_dssp             HHHTTTCSEEECSEEEESCCC-CHH--HHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEEEEE-ECCCHH-HHH-----
T ss_pred             HhcCCCCCEEECCCCCCcccc-ccc--cCCCCCEEECCCC-CcccccchhhcCCcCCEEECcCC-cCCcCC-ccc-----
Confidence            344589999999999888888 565  5899999999996 5678887 667899999999996 577665 232     


Q ss_pred             CCCCCCceeeccCCCccccccc-cccCCccccCCCccceeeeccCC
Q 048322          249 MPFPSLKILRFENLPEWWHWDT-DIKGNVHVDIFPRLQELSVVKCP  293 (498)
Q Consensus       249 ~~~~~L~~L~l~~~~~l~~~~~-~~~~~~~~~~l~~L~~L~l~~c~  293 (498)
                       .+++|+.|+++++ .+..+.. ..     +..+++|++|++++|+
T Consensus       113 -~l~~L~~L~l~~N-~i~~~~~~~~-----l~~l~~L~~L~l~~N~  151 (198)
T 1ds9_A          113 -KLVNLRVLYMSNN-KITNWGEIDK-----LAALDKLEDLLLAGNP  151 (198)
T ss_dssp             -HHHHSSEEEESEE-ECCCHHHHHH-----HTTTTTCSEEEECSCH
T ss_pred             -cCCCCCEEECCCC-cCCchhHHHH-----HhcCCCCCEEEecCCc
Confidence             4889999999876 4444331 11     2238999999999884

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.96  E-value=1.7e-06  Score=74.19  Aligned_cols=64  Identities=20%  Similarity=0.325  Sum_probs=43.1

Q ss_pred             CCCCCccEEEEcCCCCCCCccccCCCCccCC---CC----CCcCeEeeecCCCCCcCCCC--CccccccceeeccCchhH
Q 048322          394 PGFQILETLVIGNSEQLKPWRQGRGLSMGFQ---RL----TSLQSLKIWNCPNLTLFPEV--GLPSSLLDLYVNNCPRLK  464 (498)
Q Consensus       394 ~~lp~L~~L~l~~c~~L~~l~~l~~l~~~l~---~l----~~L~~L~l~~c~~l~~lp~~--~~~~sL~~L~i~~c~~l~  464 (498)
                      .++++|++|++++|..++.        .++.   .+    ++|++|+|++|++++.-.-.  .-.++|+.|++++||.++
T Consensus        82 ~~~~~L~~L~L~~C~~ItD--------~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~It  153 (176)
T 3e4g_A           82 EGLQYVEKIRLCKCHYIED--------GCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVK  153 (176)
T ss_dssp             TTCSCCCEEEEESCTTCCH--------HHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCC
T ss_pred             cCCCCCCEEEeCCCCccCH--------HHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCC
Confidence            4677788888888888763        2222   22    36888888888887652111  123788888998888765


Q ss_pred             h
Q 048322          465 K  465 (498)
Q Consensus       465 ~  465 (498)
                      .
T Consensus       154 d  154 (176)
T 3e4g_A          154 E  154 (176)
T ss_dssp             C
T ss_pred             c
Confidence            3

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.93  E-value=1.2e-05  Score=77.95  Aligned_cols=187  Identities=15%  Similarity=0.187  Sum_probs=95.3

Q ss_pred             cCCcccEEEE-ecCCCCCCcChhhHHHhhhcCCCCCCCceEEEeecCCCC----------CCccccCCCCCCccEEeEeC
Q 048322          140 KLNLHALTLE-WGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGAR----------FPLWIGDPLFSKIEFLELEN  208 (498)
Q Consensus       140 ~~~L~~L~L~-~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~----------~p~~~~~~~l~~L~~L~l~~  208 (498)
                      ...++.|.+. |..  +..........+.+.+..+++|+.|.|.+.....          ++.++.  .+|+|+.|.|++
T Consensus       106 ~~~v~~L~lg~~~~--~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~--~~P~L~~L~L~g  181 (362)
T 2ra8_A          106 LPSLKQITIGXWGY--EGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLD--AMPLLNNLKIKG  181 (362)
T ss_dssp             GGGCSEEEECCCCS--SSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHH--TCTTCCEEEEEC
T ss_pred             chhcceEEEccccc--CCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHh--cCCCCcEEEEeC
Confidence            4457788886 542  2111112333444445556899999886643211          112222  478899999988


Q ss_pred             CCCCCCCCCCCCccccceeeccccccceecC-ccccCCCCCCCCCCCceeeccCCCc-------cccccccccCCccccC
Q 048322          209 CNNCVSLPSLGLLSSLKHLAVKGLKKLKSIE-SEVYGEGFSMPFPSLKILRFENLPE-------WWHWDTDIKGNVHVDI  280 (498)
Q Consensus       209 c~~~~~lp~i~~l~~L~~L~l~~~~~l~~i~-~~~~~~~~~~~~~~L~~L~l~~~~~-------l~~~~~~~~~~~~~~~  280 (498)
                      |..+ .+|++ .+++|++|.|..|. +..-+ ..+.    ...+|+|+.|++....+       +..+.+...    ...
T Consensus       182 ~~~l-~l~~~-~~~~L~~L~L~~~~-l~~~~l~~l~----~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~----~~~  250 (362)
T 2ra8_A          182 TNNL-SIGKK-PRPNLKSLEIISGG-LPDSVVEDIL----GSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFS----KDR  250 (362)
T ss_dssp             CBTC-BCCSC-BCTTCSEEEEECSB-CCHHHHHHHH----HSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSC----TTT
T ss_pred             CCCc-eeccc-cCCCCcEEEEecCC-CChHHHHHHH----HccCCCCcEEEEeccccccccchhHHHHHHHHh----cCC
Confidence            6333 45554 37889999887653 21110 0011    02478888888742211       111110000    012


Q ss_pred             CCccceeeeccCCCccccCCCCcchHHHHHHhcccccccCCCCccccEEEecCCCcce-----ecC-CCCCCCccEEEEe
Q 048322          281 FPRLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSYPRLCRLEVDECKELV-----CRT-PIDSKLIKFMTIS  354 (498)
Q Consensus       281 l~~L~~L~l~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~L~l~~~~~~~-----~~~-~~~~~~L~~L~l~  354 (498)
                      +|+|+.|.+.+|.... ..             +..+. ..+.+++|++|+++.|....     +.. ...+++|+.|+++
T Consensus       251 ~p~Lr~L~L~~~~i~~-~~-------------~~~la-~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~  315 (362)
T 2ra8_A          251 FPNLKWLGIVDAEEQN-VV-------------VEMFL-ESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMK  315 (362)
T ss_dssp             CTTCCEEEEESCTTHH-HH-------------HHHHH-HCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECC
T ss_pred             CCCcCEEeCCCCCCch-HH-------------HHHHH-hCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECC
Confidence            7888888888763211 00             00010 12446788888887664322     111 1224666666666


Q ss_pred             cc
Q 048322          355 NS  356 (498)
Q Consensus       355 ~~  356 (498)
                      +|
T Consensus       316 ~n  317 (362)
T 2ra8_A          316 YN  317 (362)
T ss_dssp             SB
T ss_pred             CC
Confidence            55

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=97.92  E-value=3.9e-05  Score=74.17  Aligned_cols=105  Identities=18%  Similarity=0.083  Sum_probs=78.2

Q ss_pred             EEeEeCCCCCCCCCCCCCccccceeeccccccceecCccccCCCCCCCCCCCceeeccCCCccccccccccCCccccCCC
Q 048322          203 FLELENCNNCVSLPSLGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFENLPEWWHWDTDIKGNVHVDIFP  282 (498)
Q Consensus       203 ~L~l~~c~~~~~lp~i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~  282 (498)
                      .++.++.+.++.+|.++.+++|+.|+|++++.++.++...++     .+++|+.|+|+++ .++.+.++....     ++
T Consensus        12 ~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~-----~l~~L~~L~l~~N-~l~~~~~~~~~~-----l~   80 (347)
T 2ifg_A           12 GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLR-----GLGELRNLTIVKS-GLRFVAPDAFHF-----TP   80 (347)
T ss_dssp             CEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSC-----SCCCCSEEECCSS-CCCEECTTGGGS-----CS
T ss_pred             EEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhc-----cccCCCEEECCCC-ccceeCHHHhcC-----Cc
Confidence            456666447888999999999999999976789999876554     5999999999987 677776544333     99


Q ss_pred             ccceeeeccCCCccccCCCCcchHHHHHHhcccccccCCCCccccEEEecCCCcc
Q 048322          283 RLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSYPRLCRLEVDECKEL  337 (498)
Q Consensus       283 ~L~~L~l~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~L~l~~~~~~  337 (498)
                      +|+.|+|+++ .++ .+|..                .+..++ |+.|++.+|...
T Consensus        81 ~L~~L~l~~N-~l~-~~~~~----------------~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           81 RLSRLNLSFN-ALE-SLSWK----------------TVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             CCCEEECCSS-CCS-CCCST----------------TTCSCC-CCEEECCSSCCC
T ss_pred             CCCEEeCCCC-ccc-eeCHH----------------HcccCC-ceEEEeeCCCcc
Confidence            9999999987 565 56541                222233 888888877643

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.91  E-value=0.00053  Score=67.53  Aligned_cols=116  Identities=11%  Similarity=0.047  Sum_probs=69.4

Q ss_pred             cCCCCccccEEEecCCCcceec-CCCCCCCccEEEEeccEeeeecCCCCccCCCCCCcCCC----CCCCCCeEEecCC--
Q 048322          319 SLSSYPRLCRLEVDECKELVCR-TPIDSKLIKFMTISNSSLDMIGCKGMLYDSQAGSSLPK----PMTTTNVLEFGKL--  391 (498)
Q Consensus       319 ~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~l~~lp~----~l~~L~~L~i~~~--  391 (498)
                      .+..+++|+.+.+..+- ..+. ..+.-.+|+.+.+.++                +..++.    ..++|+.+.+.++  
T Consensus       221 aF~~~~~L~~l~l~~~l-~~I~~~aF~~~~L~~i~lp~~----------------i~~I~~~aF~~c~~L~~l~l~~~~~  283 (401)
T 4fdw_A          221 AFLKTSQLKTIEIPENV-STIGQEAFRESGITTVKLPNG----------------VTNIASRAFYYCPELAEVTTYGSTF  283 (401)
T ss_dssp             TTTTCTTCCCEECCTTC-CEECTTTTTTCCCSEEEEETT----------------CCEECTTTTTTCTTCCEEEEESSCC
T ss_pred             HhhCCCCCCEEecCCCc-cCccccccccCCccEEEeCCC----------------ccEEChhHhhCCCCCCEEEeCCccc
Confidence            34446777788776532 1222 2222367888888543                222221    2256777776554  


Q ss_pred             -----------CCCCCCCccEEEEcCCCCCCCccccCCCCccCCCCCCcCeEeeecCCCCCcCCCCCcc-ccccceeecc
Q 048322          392 -----------LEPGFQILETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPNLTLFPEVGLP-SSLLDLYVNN  459 (498)
Q Consensus       392 -----------~~~~lp~L~~L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~~l~~lp~~~~~-~sL~~L~i~~  459 (498)
                                 .+.++++|+.+.+.+  +++.+.     ...+.++++|+.+.|.+  +++.++...+. .+|+.+.+.+
T Consensus       284 ~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~-----~~aF~~c~~L~~l~lp~--~l~~I~~~aF~~~~L~~l~l~~  354 (401)
T 4fdw_A          284 NDDPEAMIHPYCLEGCPKLARFEIPE--SIRILG-----QGLLGGNRKVTQLTIPA--NVTQINFSAFNNTGIKEVKVEG  354 (401)
T ss_dssp             CCCTTCEECTTTTTTCTTCCEECCCT--TCCEEC-----TTTTTTCCSCCEEEECT--TCCEECTTSSSSSCCCEEEECC
T ss_pred             cCCcccEECHHHhhCCccCCeEEeCC--ceEEEh-----hhhhcCCCCccEEEECc--cccEEcHHhCCCCCCCEEEEcC
Confidence                       345677788888763  344321     34577889999999954  57777664321 2888888877


Q ss_pred             C
Q 048322          460 C  460 (498)
Q Consensus       460 c  460 (498)
                      .
T Consensus       355 n  355 (401)
T 4fdw_A          355 T  355 (401)
T ss_dssp             S
T ss_pred             C
Confidence            5

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.90  E-value=3.8e-06  Score=71.98  Aligned_cols=89  Identities=10%  Similarity=0.031  Sum_probs=45.2

Q ss_pred             CccEEeEeCCCCCC--CCCCCCCccccceeeccccccceecCccccCCCCCC-CCCCCceeeccCCCccccccccccCCc
Q 048322          200 KIEFLELENCNNCV--SLPSLGLLSSLKHLAVKGLKKLKSIESEVYGEGFSM-PFPSLKILRFENLPEWWHWDTDIKGNV  276 (498)
Q Consensus       200 ~L~~L~l~~c~~~~--~lp~i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~-~~~~L~~L~l~~~~~l~~~~~~~~~~~  276 (498)
                      +|++|++++|. ++  .+..+..+++|++|++++|..++.-+-.....  .. ..++|++|++++|++++.-.-.     
T Consensus        62 ~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~--~~~~~~~L~~L~Ls~C~~ITD~Gl~-----  133 (176)
T 3e4g_A           62 KIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQ--LENLQKSMLEMEIISCGNVTDKGII-----  133 (176)
T ss_dssp             CEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHT--CHHHHHHCCEEEEESCTTCCHHHHH-----
T ss_pred             eEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHh--cccccCCCCEEEcCCCCcCCHHHHH-----
Confidence            45556665554 33  22234556666666666665544332211110  00 0235677777777665543210     


Q ss_pred             cccCCCccceeeeccCCCcc
Q 048322          277 HVDIFPRLQELSVVKCPKLS  296 (498)
Q Consensus       277 ~~~~l~~L~~L~l~~c~~l~  296 (498)
                      .+..+++|++|+|++|+.++
T Consensus       134 ~L~~~~~L~~L~L~~c~~It  153 (176)
T 3e4g_A          134 ALHHFRNLKYLFLSDLPGVK  153 (176)
T ss_dssp             HGGGCTTCCEEEEESCTTCC
T ss_pred             HHhcCCCCCEEECCCCCCCC
Confidence            11227788888888887665

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.77  E-value=6.5e-06  Score=79.94  Aligned_cols=173  Identities=12%  Similarity=0.065  Sum_probs=95.8

Q ss_pred             hcccCCcccEEEEecCCCCCCcCh-hhHHHhhhcCCCCCCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCC-
Q 048322          137 LCEKLNLHALTLEWGSQFDNSRDV-AVEEHVLDILQPHKCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVS-  214 (498)
Q Consensus       137 l~~~~~L~~L~L~~~~~~~~~~~~-~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~-  214 (498)
                      +..+++|+.|.+....... .... .....+...+.++++|+.|.++|+.+..+|. +   .+++|++|.|..|. +.. 
T Consensus       135 ~~~l~~L~~L~l~~~~~e~-~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~---~~~~L~~L~L~~~~-l~~~  208 (362)
T 2ra8_A          135 KEKFAHFEGLFWGDIDFEE-QEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK-K---PRPNLKSLEIISGG-LPDS  208 (362)
T ss_dssp             HHHHTTCSEEEECCCCTTT-CCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS-C---BCTTCSEEEEECSB-CCHH
T ss_pred             hhhcchhhheeecCcchhh-cccccccccCHHHHHhcCCCCcEEEEeCCCCceecc-c---cCCCCcEEEEecCC-CChH
Confidence            4567899999885432100 0000 0000122333456899999999986556655 2   37899999998763 221 


Q ss_pred             -CCCC--CCccccceeecccccc-------ceecCccccCCCCCCCCCCCceeeccCCCccccccccccCCccccCCCcc
Q 048322          215 -LPSL--GLLSSLKHLAVKGLKK-------LKSIESEVYGEGFSMPFPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRL  284 (498)
Q Consensus       215 -lp~i--~~l~~L~~L~l~~~~~-------l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L  284 (498)
                       +..+  ..+|+|++|+|..+.+       +..+...+.    ...||+|++|.+.+|..-.........   ...+++|
T Consensus       209 ~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~----~~~~p~Lr~L~L~~~~i~~~~~~~la~---a~~~~~L  281 (362)
T 2ra8_A          209 VVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFS----KDRFPNLKWLGIVDAEEQNVVVEMFLE---SDILPQL  281 (362)
T ss_dssp             HHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSC----TTTCTTCCEEEEESCTTHHHHHHHHHH---CSSGGGC
T ss_pred             HHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHh----cCCCCCcCEEeCCCCCCchHHHHHHHh---CccCCCC
Confidence             1112  3689999999853211       111111111    135899999999877432111100000   0128999


Q ss_pred             ceeeeccCCCccccCCCCcchHHHHHHhcccccccCCCCccccEEEecCCCc
Q 048322          285 QELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSYPRLCRLEVDECKE  336 (498)
Q Consensus       285 ~~L~l~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~L~l~~~~~  336 (498)
                      ++|+|+.| .+.+.      ..+.       +...++.+++|+.|++++|..
T Consensus       282 ~~LdLs~n-~L~d~------G~~~-------L~~~L~~l~~L~~L~L~~n~i  319 (362)
T 2ra8_A          282 ETMDISAG-VLTDE------GARL-------LLDHVDKIKHLKFINMKYNYL  319 (362)
T ss_dssp             SEEECCSS-CCBHH------HHHH-------HHTTHHHHTTCSEEECCSBBC
T ss_pred             CEEECCCC-CCChH------HHHH-------HHhhcccCCcceEEECCCCcC
Confidence            99999765 44311      0011       111223467899999988853

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.38  E-value=0.0045  Score=60.70  Aligned_cols=69  Identities=10%  Similarity=0.026  Sum_probs=37.7

Q ss_pred             CCCCeEEecCC-------CCCCCCCccEEEEcCCCCCCCccccCCCCccCCCCCCcCeEeeecCCCCCcCCCCCc--ccc
Q 048322          381 TTTNVLEFGKL-------LEPGFQILETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPNLTLFPEVGL--PSS  451 (498)
Q Consensus       381 ~~L~~L~i~~~-------~~~~lp~L~~L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~~l~~lp~~~~--~~s  451 (498)
                      .+|+.+.+.++       .+.++.+|+++.|.+  +++.+.     ...+.++++|+.+.+..  .++.++...+  .++
T Consensus       297 ~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~-----~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~  367 (394)
T 4fs7_A          297 SSLTEVKLLDSVKFIGEEAFESCTSLVSIDLPY--LVEEIG-----KRSFRGCTSLSNINFPL--SLRKIGANAFQGCIN  367 (394)
T ss_dssp             TTCCEEEECTTCCEECTTTTTTCTTCCEECCCT--TCCEEC-----TTTTTTCTTCCEECCCT--TCCEECTTTBTTCTT
T ss_pred             ccccccccccccceechhhhcCCCCCCEEEeCC--cccEEh-----HHhccCCCCCCEEEECc--cccEehHHHhhCCCC
Confidence            45666655444       344455566666632  232221     33466677777777754  3666655433  256


Q ss_pred             ccceeec
Q 048322          452 LLDLYVN  458 (498)
Q Consensus       452 L~~L~i~  458 (498)
                      |+.+++.
T Consensus       368 L~~i~lp  374 (394)
T 4fs7_A          368 LKKVELP  374 (394)
T ss_dssp             CCEEEEE
T ss_pred             CCEEEEC
Confidence            7777664

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=96.72  E-value=3.5e-05  Score=75.28  Aligned_cols=142  Identities=15%  Similarity=0.009  Sum_probs=66.9

Q ss_pred             cCCcccEEEEecCCCCCCcChhhHHHhhhcCCC-CCCCceEEEeecCCCCC-CccccCCCCCCccEEeEeCCCCCCCCCC
Q 048322          140 KLNLHALTLEWGSQFDNSRDVAVEEHVLDILQP-HKCIKKVAIRNYGGARF-PLWIGDPLFSKIEFLELENCNNCVSLPS  217 (498)
Q Consensus       140 ~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~-~~~L~~L~l~~~~~~~~-p~~~~~~~l~~L~~L~l~~c~~~~~lp~  217 (498)
                      ..+|+.|+|+.+.-     .......+...+.. +.+|++|++++|..... ...+.. .+++|++|+|++| .++....
T Consensus        71 ~~~L~~L~Ls~n~l-----~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~-~L~~L~~L~Ls~n-~l~~~~~  143 (372)
T 3un9_A           71 LSSLRQLNLAGVRM-----TPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLP-VFLRARKLGLQLN-SLGPEAC  143 (372)
T ss_dssp             HTTCCEEECTTSCC-----CHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHH-HHHTEEEEECCSS-CCCHHHH
T ss_pred             HhhCCEEEecCCCC-----CHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHH-HHHhccHhhcCCC-CCCHHHH
Confidence            45677888866541     11122233333332 36788888887764321 111111 3457888888876 3332110


Q ss_pred             --C-----CCccccceeeccccccceecCccccCCCCCCCCCCCceeeccCCCccccccccccCCccccCCCccceeeec
Q 048322          218 --L-----GLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVV  290 (498)
Q Consensus       218 --i-----~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~  290 (498)
                        +     ...++|++|++++|. ++..+..... ..+...++|++|+++++. +........ ...+...++|++|+++
T Consensus       144 ~~L~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~-~~L~~~~~L~~L~Ls~N~-l~~~g~~~L-~~~L~~~~~L~~L~Ls  219 (372)
T 3un9_A          144 KDLRDLLLHDQCQITTLRLSNNP-LTAAGVAVLM-EGLAGNTSVTHLSLLHTG-LGDEGLELL-AAQLDRNRQLQELNVA  219 (372)
T ss_dssp             HHHHHHHHSTTCCCCEEECCSSC-CHHHHHHHHH-HHHHTCSSCCEEECTTSS-CHHHHHHHH-HHHGGGCSCCCEEECC
T ss_pred             HHHHHHHHhcCCccceeeCCCCC-CChHHHHHHH-HHHhcCCCcCEEeCCCCC-CCcHHHHHH-HHHHhcCCCcCeEECC
Confidence              1     234567777777753 3332211110 001135667777776652 222110000 0011124567777777


Q ss_pred             cC
Q 048322          291 KC  292 (498)
Q Consensus       291 ~c  292 (498)
                      +|
T Consensus       220 ~N  221 (372)
T 3un9_A          220 YN  221 (372)
T ss_dssp             SS
T ss_pred             CC
Confidence            66

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=96.64  E-value=0.19  Score=49.01  Aligned_cols=72  Identities=17%  Similarity=0.215  Sum_probs=40.9

Q ss_pred             CCCCeEEecCC-------CCCCCCCccEEEEcCCCCCCCccccCCCCccCCCCCCcCeEeeecCCCCCcCCCCCc--ccc
Q 048322          381 TTTNVLEFGKL-------LEPGFQILETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPNLTLFPEVGL--PSS  451 (498)
Q Consensus       381 ~~L~~L~i~~~-------~~~~lp~L~~L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~~l~~lp~~~~--~~s  451 (498)
                      ++|+.+.+...       .+.++.+|+++.|..  +++.+.     ...+.++++|+++.|..  .++.++...+  .++
T Consensus       288 ~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~-----~~aF~~C~~L~~i~ip~--sv~~I~~~aF~~C~~  358 (394)
T 4gt6_A          288 PALQDIEFSSRITELPESVFAGCISLKSIDIPE--GITQIL-----DDAFAGCEQLERIAIPS--SVTKIPESAFSNCTA  358 (394)
T ss_dssp             TTCCEEECCTTCCEECTTTTTTCTTCCEEECCT--TCCEEC-----TTTTTTCTTCCEEEECT--TCCBCCGGGGTTCTT
T ss_pred             cccccccCCCcccccCceeecCCCCcCEEEeCC--cccEeh-----HhHhhCCCCCCEEEECc--ccCEEhHhHhhCCCC
Confidence            44555554433       334455566666632  232221     33566778888888853  4666765433  367


Q ss_pred             ccceeeccCc
Q 048322          452 LLDLYVNNCP  461 (498)
Q Consensus       452 L~~L~i~~c~  461 (498)
                      |+.+++.+..
T Consensus       359 L~~i~~~~~~  368 (394)
T 4gt6_A          359 LNNIEYSGSR  368 (394)
T ss_dssp             CCEEEESSCH
T ss_pred             CCEEEECCce
Confidence            8888887653

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=96.61  E-value=3.7e-05  Score=75.07  Aligned_cols=114  Identities=11%  Similarity=0.078  Sum_probs=57.3

Q ss_pred             CCCceEEEeecCCCCCC-----ccccCCCCCCccEEeEeCCCCCCC--CCCC-CCccccceeeccccccceecCccccCC
Q 048322          174 KCIKKVAIRNYGGARFP-----LWIGDPLFSKIEFLELENCNNCVS--LPSL-GLLSSLKHLAVKGLKKLKSIESEVYGE  245 (498)
Q Consensus       174 ~~L~~L~l~~~~~~~~p-----~~~~~~~l~~L~~L~l~~c~~~~~--lp~i-~~l~~L~~L~l~~~~~l~~i~~~~~~~  245 (498)
                      ++|+.|+++++......     ..+. ...++|++|+|++|. ++.  +..+ ..+++|++|++++| .++..+......
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~-~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~~  148 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLG-SGRHALDEVNLASCQ-LDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLRD  148 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHS-SCSSCEEEEECTTCC-CCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHh-hCCCCceEEEecCCC-CCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHHH
Confidence            67899999988754321     1111 123689999999874 322  1122 23567888888876 343322211110


Q ss_pred             CCCCCCCCCceeeccCCCccccccccccCCccccCCCccceeeeccC
Q 048322          246 GFSMPFPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKC  292 (498)
Q Consensus       246 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c  292 (498)
                      .-....++|++|++++| .+........ ...+...++|++|++++|
T Consensus       149 ~L~~~~~~L~~L~Ls~n-~l~~~~~~~l-~~~L~~~~~L~~L~Ls~N  193 (372)
T 3un9_A          149 LLLHDQCQITTLRLSNN-PLTAAGVAVL-MEGLAGNTSVTHLSLLHT  193 (372)
T ss_dssp             HHHSTTCCCCEEECCSS-CCHHHHHHHH-HHHHHTCSSCCEEECTTS
T ss_pred             HHHhcCCccceeeCCCC-CCChHHHHHH-HHHHhcCCCcCEEeCCCC
Confidence            00012456777777666 2322110000 000112566777777666

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=95.90  E-value=0.23  Score=47.91  Aligned_cols=69  Identities=19%  Similarity=0.199  Sum_probs=35.8

Q ss_pred             CCCCeEEecCC-------CCCCCCCccEEEEcCCCCCCCccccCCCCccCCCCCCcCeEeeecCCCCCcCCCCCc--ccc
Q 048322          381 TTTNVLEFGKL-------LEPGFQILETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPNLTLFPEVGL--PSS  451 (498)
Q Consensus       381 ~~L~~L~i~~~-------~~~~lp~L~~L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~~l~~lp~~~~--~~s  451 (498)
                      .+|+.+.+...       .+.++++|+.+.+.+ ..++.+.     ...+.++++|+.+.+.+  .++.++...+  ..+
T Consensus       263 ~~l~~i~l~~~i~~i~~~aF~~c~~L~~i~l~~-~~i~~I~-----~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~  334 (379)
T 4h09_A          263 TALKTLNFYAKVKTVPYLLCSGCSNLTKVVMDN-SAIETLE-----PRVFMDCVKLSSVTLPT--ALKTIQVYAFKNCKA  334 (379)
T ss_dssp             TTCCEEEECCCCSEECTTTTTTCTTCCEEEECC-TTCCEEC-----TTTTTTCTTCCEEECCT--TCCEECTTTTTTCTT
T ss_pred             ehhccccccccceeccccccccccccccccccc-cccceeh-----hhhhcCCCCCCEEEcCc--cccEEHHHHhhCCCC
Confidence            34555555443       344556677777644 2232221     33466677777777743  4555554322  245


Q ss_pred             ccceee
Q 048322          452 LLDLYV  457 (498)
Q Consensus       452 L~~L~i  457 (498)
                      |+.+.+
T Consensus       335 L~~i~i  340 (379)
T 4h09_A          335 LSTISY  340 (379)
T ss_dssp             CCCCCC
T ss_pred             CCEEEE
Confidence            555555

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=95.83  E-value=0.23  Score=48.31  Aligned_cols=55  Identities=18%  Similarity=0.289  Sum_probs=35.3

Q ss_pred             CCCCccEEeEeCCCCCCCCCC--CCCccccceeeccccccceecCccccCCCCCCCCCCCceeecc
Q 048322          197 LFSKIEFLELENCNNCVSLPS--LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFE  260 (498)
Q Consensus       197 ~l~~L~~L~l~~c~~~~~lp~--i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~  260 (498)
                      .+.+|+.+.+.+  .+..++.  +..+.+|+.+.+..  +++.++...+.     .+..|+.+.+.
T Consensus       160 ~c~~L~~i~l~~--~~~~I~~~~F~~c~~L~~i~l~~--~~~~I~~~~F~-----~~~~L~~i~~~  216 (394)
T 4fs7_A          160 TCESLEYVSLPD--SMETLHNGLFSGCGKLKSIKLPR--NLKIIRDYCFA-----ECILLENMEFP  216 (394)
T ss_dssp             TCTTCCEEECCT--TCCEECTTTTTTCTTCCBCCCCT--TCCEECTTTTT-----TCTTCCBCCCC
T ss_pred             ccCCCcEEecCC--ccceeccccccCCCCceEEEcCC--CceEeCchhhc-----cccccceeecC
Confidence            467788888865  3455554  66778888888864  46677665443     35566655543

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=95.78  E-value=0.0011  Score=57.55  Aligned_cols=78  Identities=14%  Similarity=0.142  Sum_probs=50.3

Q ss_pred             CCCchHHhHHHhhcccCCcccEEEEec-CCCCCCcChhhHHHhhhcCCCCCCCceEEEeecCCCC-----CCccccCCCC
Q 048322          125 VPTERENAREAALCEKLNLHALTLEWG-SQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGAR-----FPLWIGDPLF  198 (498)
Q Consensus       125 ~v~~~~~~~~~~l~~~~~L~~L~L~~~-~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~-----~p~~~~~~~l  198 (498)
                      +..+..++....+...+.|+.|+|+++ .-     .......+.+.+...++|++|+++++....     +...+.  ..
T Consensus        20 ~~~~~~~~l~~~l~~~~~L~~L~L~~n~~i-----~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~--~n   92 (185)
T 1io0_A           20 NSTDVEETLKRIQNNDPDLEEVNLNNIMNI-----PVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLK--VN   92 (185)
T ss_dssp             CCCCHHHHHHHHHTTCTTCCEEECTTCTTC-----CHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHH--HC
T ss_pred             CccHHHHHHHHHHhcCCCCCEEEecCCCCC-----CHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHH--hC
Confidence            344556666667778899999999776 31     122334456667777889999998887432     112222  24


Q ss_pred             CCccEEeEeCC
Q 048322          199 SKIEFLELENC  209 (498)
Q Consensus       199 ~~L~~L~l~~c  209 (498)
                      ++|++|+|++|
T Consensus        93 ~~L~~L~L~~N  103 (185)
T 1io0_A           93 NTLKSLNVESN  103 (185)
T ss_dssp             SSCCEEECCSS
T ss_pred             CCcCEEECcCC
Confidence            56788888775

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=95.12  E-value=0.0051  Score=56.50  Aligned_cols=16  Identities=19%  Similarity=0.235  Sum_probs=11.4

Q ss_pred             HHHhhhhhhHHHHHHH
Q 048322           28 DLAYDAEDILDGFGTQ   43 (498)
Q Consensus        28 d~~yd~eDvlD~~~~~   43 (498)
                      ..-||.+++++-+..+
T Consensus        32 g~ky~k~~ll~~i~~~   47 (267)
T 3rw6_A           32 GRKYDKAWLLSMIQSK   47 (267)
T ss_dssp             GGGSCHHHHHHHHHHT
T ss_pred             ccccCHHHHHHHHHHh
Confidence            4568888888887543

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=94.15  E-value=0.024  Score=52.02  Aligned_cols=11  Identities=9%  Similarity=-0.004  Sum_probs=7.1

Q ss_pred             CCCCeEEecCC
Q 048322          381 TTTNVLEFGKL  391 (498)
Q Consensus       381 ~~L~~L~i~~~  391 (498)
                      ++|+.|++++|
T Consensus       170 ~~L~~L~Ls~N  180 (267)
T 3rw6_A          170 PELLSLNLSNN  180 (267)
T ss_dssp             TTCCEEECTTS
T ss_pred             CCCCEEECCCC
Confidence            56666666666

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=90.49  E-value=0.25  Score=39.68  Aligned_cols=50  Identities=22%  Similarity=0.202  Sum_probs=28.8

Q ss_pred             eEEEeecCCC--CCCccccCCCCCCccEEeEeCCCCCCCCCC--CCCccccceeecccc
Q 048322          178 KVAIRNYGGA--RFPLWIGDPLFSKIEFLELENCNNCVSLPS--LGLLSSLKHLAVKGL  232 (498)
Q Consensus       178 ~L~l~~~~~~--~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~--i~~l~~L~~L~l~~~  232 (498)
                      .++.++.+..  .+|..+.    ++|++|+|++| .++.+|.  +..+++|+.|+|.++
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp----~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N   65 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP----VDTTELVLTGN-NLTALPPGLLDALPALRTAHLGAN   65 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC----TTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSS
T ss_pred             EEEeCCCCCccccCCCCCC----cCCCEEECCCC-cCCccChhhhhhccccCEEEecCC
Confidence            4555555555  5665332    35677777763 5666664  455666666666654

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=89.99  E-value=0.06  Score=46.36  Aligned_cols=69  Identities=9%  Similarity=0.045  Sum_probs=45.1

Q ss_pred             HHhhcccCCcccEEEEecCCCCCCcChhhHHHhhhcCCCCCCCceEEEeecCCCC-----CCccccCCCCCCccEEeE--
Q 048322          134 EAALCEKLNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGAR-----FPLWIGDPLFSKIEFLEL--  206 (498)
Q Consensus       134 ~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~-----~p~~~~~~~l~~L~~L~l--  206 (498)
                      ...+...++|++|+|+++.-     .......+.+.+...++|++|+++++....     +...+.  ..+.|++|+|  
T Consensus        58 ~~~L~~~~~L~~L~Ls~n~i-----~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~--~n~~L~~L~L~~  130 (185)
T 1io0_A           58 AEALKTNTYVKKFSIVGTRS-----NDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQ--SNTSLIELRIDN  130 (185)
T ss_dssp             HHHHTTCCSCCEEECTTSCC-----CHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGG--GCSSCCEEECCC
T ss_pred             HHHHHhCCCcCEEECcCCCC-----ChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHH--hCCCceEEEecC
Confidence            34456678999999988752     122233455666667899999999987543     223333  3567888888  


Q ss_pred             eCC
Q 048322          207 ENC  209 (498)
Q Consensus       207 ~~c  209 (498)
                      ++|
T Consensus       131 ~~N  133 (185)
T 1io0_A          131 QSQ  133 (185)
T ss_dssp             CSS
T ss_pred             CCC
Confidence            544

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=88.53  E-value=1.4  Score=42.63  Aligned_cols=35  Identities=14%  Similarity=0.272  Sum_probs=15.2

Q ss_pred             CCCccccceeeccccccceecCccccCCCCCCCCCCCceeec
Q 048322          218 LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRF  259 (498)
Q Consensus       218 i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l  259 (498)
                      +..+++|+.+.+..  .++.++...|.     .+.+|+.+.+
T Consensus       284 F~~c~~L~~i~l~~--~i~~I~~~aF~-----~c~~L~~i~l  318 (394)
T 4gt6_A          284 FMNCPALQDIEFSS--RITELPESVFA-----GCISLKSIDI  318 (394)
T ss_dssp             TTTCTTCCEEECCT--TCCEECTTTTT-----TCTTCCEEEC
T ss_pred             cccccccccccCCC--cccccCceeec-----CCCCcCEEEe
Confidence            34444555554432  34444443332     2444444444

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=81.90  E-value=4.3  Score=38.77  Aligned_cols=55  Identities=20%  Similarity=0.283  Sum_probs=31.4

Q ss_pred             CCCccEEeEeCCCCCCCCCC--CCCccccceeeccccccceecCccccCCCCCCCCCCCceeeccC
Q 048322          198 FSKIEFLELENCNNCVSLPS--LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFEN  261 (498)
Q Consensus       198 l~~L~~L~l~~c~~~~~lp~--i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~  261 (498)
                      +.+|+.+.+..  .++.++.  +..+.+|+.+.+..  +++.++...|.     .+.+|+.+.+.+
T Consensus       239 ~~~L~~i~lp~--~v~~I~~~aF~~~~~l~~i~l~~--~i~~i~~~aF~-----~c~~L~~i~l~~  295 (379)
T 4h09_A          239 MKALDEIAIPK--NVTSIGSFLLQNCTALKTLNFYA--KVKTVPYLLCS-----GCSNLTKVVMDN  295 (379)
T ss_dssp             CSSCCEEEECT--TCCEECTTTTTTCTTCCEEEECC--CCSEECTTTTT-----TCTTCCEEEECC
T ss_pred             CccceEEEcCC--CccEeCccccceeehhccccccc--cceeccccccc-----cccccccccccc
Confidence            55677776654  2444443  55566677666643  45566554443     366666666643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	498
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.63
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.61
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.57
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.47
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.45
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.44
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.38
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.36
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.35
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.32
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.32
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.3
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.23
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.2
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.2
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.18
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.17
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.16
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.11
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.05
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.02
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.99
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.81
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.65
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.64
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.61
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.58
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.53
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.34
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.11
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.07
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.03
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.72
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.53
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.31
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	94.2
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	94.11
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	91.72
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	91.01
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	85.36
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	84.17
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	80.54

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.63  E-value=1.9e-15  Score=147.30  Aligned_cols=79  Identities=11%  Similarity=0.102  Sum_probs=58.3

Q ss_pred             ccCCcccEEEEecCCCCCCcChhhHHHhhhcCCCCCCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCCC
Q 048322          139 EKLNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPSL  218 (498)
Q Consensus       139 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~i  218 (498)
                      ++.+|++|+++.+.- .          -+++++.+++|++|+++++....+|. +.  .+++|++|++++| .+..++++
T Consensus        42 ~l~~l~~L~l~~~~I-~----------~l~gl~~L~nL~~L~Ls~N~l~~l~~-l~--~L~~L~~L~L~~n-~i~~i~~l  106 (384)
T d2omza2          42 DLDQVTTLQADRLGI-K----------SIDGVEYLNNLTQINFSNNQLTDITP-LK--NLTKLVDILMNNN-QIADITPL  106 (384)
T ss_dssp             HHTTCCEEECCSSCC-C----------CCTTGGGCTTCCEEECCSSCCCCCGG-GT--TCTTCCEEECCSS-CCCCCGGG
T ss_pred             HhCCCCEEECCCCCC-C----------CccccccCCCCCEEeCcCCcCCCCcc-cc--CCccccccccccc-cccccccc
Confidence            345788888866541 0          12455667889999999988887775 44  5889999999886 56677778


Q ss_pred             CCccccceeecccc
Q 048322          219 GLLSSLKHLAVKGL  232 (498)
Q Consensus       219 ~~l~~L~~L~l~~~  232 (498)
                      +.+++|+.|++.++
T Consensus       107 ~~l~~L~~L~~~~~  120 (384)
T d2omza2         107 ANLTNLTGLTLFNN  120 (384)
T ss_dssp             TTCTTCCEEECCSS
T ss_pred             cccccccccccccc
Confidence            88899999988764

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.61  E-value=2e-15  Score=143.14  Aligned_cols=241  Identities=16%  Similarity=0.157  Sum_probs=143.5

Q ss_pred             CCCceEEEeecCCC---CCCccccCCCCCCccEEeEeCCCCC-CCCCC-CCCccccceeeccccccceecCccccCCCCC
Q 048322          174 KCIKKVAIRNYGGA---RFPLWIGDPLFSKIEFLELENCNNC-VSLPS-LGLLSSLKHLAVKGLKKLKSIESEVYGEGFS  248 (498)
Q Consensus       174 ~~L~~L~l~~~~~~---~~p~~~~~~~l~~L~~L~l~~c~~~-~~lp~-i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~  248 (498)
                      .+++.|++++++..   .+|..++  .+++|++|+|++|+.+ +.+|+ |+++++|++|+++++ .+..++...+.    
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~--~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N-~l~~~~~~~~~----  122 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLA--NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT-NVSGAIPDFLS----  122 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGG--GCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEE-CCEEECCGGGG----
T ss_pred             EEEEEEECCCCCCCCCCCCChHHh--cCccccccccccccccccccccccccccccchhhhccc-ccccccccccc----
Confidence            35667777776543   4677777  5888888888765444 46776 888888888888875 35555443332    


Q ss_pred             CCCCCCceeeccCCCccccccccccCCccccCCCccceeeeccCCCccccCCCCcchHHHHHHhcccccccCCCCcc-cc
Q 048322          249 MPFPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSYPR-LC  327 (498)
Q Consensus       249 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~~l~~-L~  327 (498)
                       .+++|+.+++..+.....+ +..     +..+++|+.++++++ .+.+.+|..+.                 .+.. ++
T Consensus       123 -~~~~L~~l~l~~N~~~~~~-p~~-----l~~l~~L~~l~l~~n-~l~~~ip~~~~-----------------~l~~l~~  177 (313)
T d1ogqa_         123 -QIKTLVTLDFSYNALSGTL-PPS-----ISSLPNLVGITFDGN-RISGAIPDSYG-----------------SFSKLFT  177 (313)
T ss_dssp             -GCTTCCEEECCSSEEESCC-CGG-----GGGCTTCCEEECCSS-CCEEECCGGGG-----------------CCCTTCC
T ss_pred             -chhhhcccccccccccccC-chh-----hccCcccceeecccc-ccccccccccc-----------------ccccccc
Confidence             3777888877765332222 111     223778888888877 34446665322                 2222 24


Q ss_pred             EEEecCCCcceec-CCCCCCCccEEEEeccEeeeecCCCCccCCCCCCcCCCCCCCCCeEEecCC-------CCCCCCCc
Q 048322          328 RLEVDECKELVCR-TPIDSKLIKFMTISNSSLDMIGCKGMLYDSQAGSSLPKPMTTTNVLEFGKL-------LEPGFQIL  399 (498)
Q Consensus       328 ~L~l~~~~~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~l~~lp~~l~~L~~L~i~~~-------~~~~lp~L  399 (498)
                      .+.+.++...... .......+..+++.++......           ......+++|+.|++.+|       .++.+++|
T Consensus       178 ~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~-----------~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L  246 (313)
T d1ogqa_         178 SMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDA-----------SVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNL  246 (313)
T ss_dssp             EEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECC-----------GGGCCTTSCCSEEECCSSEECCBGGGCCCCTTC
T ss_pred             cccccccccccccccccccccccccccccccccccc-----------ccccccccccccccccccccccccccccccccc
Confidence            4444444332211 1111122234444443222210           011123356666666666       34556779


Q ss_pred             cEEEEcCCCCCCCccccCCCCccCCCCCCcCeEeeecCCCCCcCCCCCccccccceeeccCchh
Q 048322          400 ETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPNLTLFPEVGLPSSLLDLYVNNCPRL  463 (498)
Q Consensus       400 ~~L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~sL~~L~i~~c~~l  463 (498)
                      +.|+++++. +++     .+|.++..+++|++|+++++..-+.+|..+.+++|+.+++.+++.+
T Consensus       247 ~~L~Ls~N~-l~g-----~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l~~N~~l  304 (313)
T d1ogqa_         247 NGLDLRNNR-IYG-----TLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCL  304 (313)
T ss_dssp             CEEECCSSC-CEE-----CCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEE
T ss_pred             ccccCccCe-ecc-----cCChHHhCCCCCCEEECcCCcccccCCCcccCCCCCHHHhCCCccc
Confidence            999998854 431     2499999999999999999643347887766789999999888644

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.57  E-value=6e-14  Score=132.19  Aligned_cols=235  Identities=13%  Similarity=0.089  Sum_probs=150.4

Q ss_pred             CCCceEEEeecCCCCCCc-cccCCCCCCccEEeEeCCCCCCCCCC-CCCccccceeeccccccceecCccccCCCCCCCC
Q 048322          174 KCIKKVAIRNYGGARFPL-WIGDPLFSKIEFLELENCNNCVSLPS-LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPF  251 (498)
Q Consensus       174 ~~L~~L~l~~~~~~~~p~-~~~~~~l~~L~~L~l~~c~~~~~lp~-i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~  251 (498)
                      +++++|+++++....+|. ++.  .+++|++|++++|......|. +.++++|++|+++++ .++.+|..+        +
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~--~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n-~l~~l~~~~--------~   99 (305)
T d1xkua_          31 PDTALLDLQNNKITEIKDGDFK--NLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN-QLKELPEKM--------P   99 (305)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTT--TCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCSBCCSSC--------C
T ss_pred             CCCCEEECcCCcCCCcChhHhh--ccccccccccccccccccchhhhhCCCccCEecccCC-ccCcCccch--------h
Confidence            678888888888877775 454  578888888888654333343 778888888888875 477776532        4


Q ss_pred             CCCceeeccCCCccccccccccCCccccCCCccceeeeccCCCccccCCCCcchHHHHHHhcccccccCCCCccccEEEe
Q 048322          252 PSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSYPRLCRLEV  331 (498)
Q Consensus       252 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~L~l  331 (498)
                      +.+..|.+.+. .+..+......     ....+..+....++......                ....+..+++|+.+.+
T Consensus       100 ~~l~~L~~~~n-~l~~l~~~~~~-----~~~~~~~l~~~~n~~~~~~~----------------~~~~~~~l~~L~~l~l  157 (305)
T d1xkua_         100 KTLQELRVHEN-EITKVRKSVFN-----GLNQMIVVELGTNPLKSSGI----------------ENGAFQGMKKLSYIRI  157 (305)
T ss_dssp             TTCCEEECCSS-CCCBBCHHHHT-----TCTTCCEEECCSSCCCGGGB----------------CTTGGGGCTTCCEEEC
T ss_pred             hhhhhhhcccc-chhhhhhhhhh-----ccccccccccccccccccCC----------------CccccccccccCcccc
Confidence            56777776554 22222211111     14445555555443221000                0113444778888888


Q ss_pred             cCCCcceecCCCCCCCccEEEEeccEeeeecCCCCccCCCCCCcCCCCCCCCCeEEecCC--------CCCCCCCccEEE
Q 048322          332 DECKELVCRTPIDSKLIKFMTISNSSLDMIGCKGMLYDSQAGSSLPKPMTTTNVLEFGKL--------LEPGFQILETLV  403 (498)
Q Consensus       332 ~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~l~~lp~~l~~L~~L~i~~~--------~~~~lp~L~~L~  403 (498)
                      .+|....++.. .+++|++|++++|........          .+ ..++.++.|++++|        .+.++++|++|+
T Consensus       158 ~~n~l~~l~~~-~~~~L~~L~l~~n~~~~~~~~----------~~-~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~  225 (305)
T d1xkua_         158 ADTNITTIPQG-LPPSLTELHLDGNKITKVDAA----------SL-KGLNNLAKLGLSFNSISAVDNGSLANTPHLRELH  225 (305)
T ss_dssp             CSSCCCSCCSS-CCTTCSEEECTTSCCCEECTG----------GG-TTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEE
T ss_pred             ccCCccccCcc-cCCccCEEECCCCcCCCCChh----------Hh-hccccccccccccccccccccccccccccceeee
Confidence            88876554433 367888888877632221110          11 23367788888887        235578899999


Q ss_pred             EcCCCCCCCccccCCCCccCCCCCCcCeEeeecCCCCCcCCCCC--------ccccccceeeccCc
Q 048322          404 IGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPNLTLFPEVG--------LPSSLLDLYVNNCP  461 (498)
Q Consensus       404 l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~~l~~lp~~~--------~~~sL~~L~i~~c~  461 (498)
                      ++++ .++.+      |.++..+++|++|+++++ ++++++...        .+++|+.|+++++|
T Consensus       226 L~~N-~L~~l------p~~l~~l~~L~~L~Ls~N-~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~  283 (305)
T d1xkua_         226 LNNN-KLVKV------PGGLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNP  283 (305)
T ss_dssp             CCSS-CCSSC------CTTTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred             cccc-ccccc------ccccccccCCCEEECCCC-ccCccChhhccCcchhcccCCCCEEECCCCc
Confidence            9996 56543      889999999999999995 788886532        23789999999887

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.47  E-value=6.5e-13  Score=127.24  Aligned_cols=93  Identities=18%  Similarity=0.190  Sum_probs=62.1

Q ss_pred             CCcccEEEEecCCCCCCcChhhHHHhhhcCCCCCCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCCCCC
Q 048322          141 LNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPSLGL  220 (498)
Q Consensus       141 ~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~i~~  220 (498)
                      .++++|+|+.+.- +         .+++.   +++|++|+++++....+|..     +.+|+.|++.++ .++.++.+. 
T Consensus        38 ~~l~~LdLs~~~L-~---------~lp~~---~~~L~~L~Ls~N~l~~lp~~-----~~~L~~L~l~~n-~l~~l~~lp-   97 (353)
T d1jl5a_          38 RQAHELELNNLGL-S---------SLPEL---PPHLESLVASCNSLTELPEL-----PQSLKSLLVDNN-NLKALSDLP-   97 (353)
T ss_dssp             HTCSEEECTTSCC-S---------CCCSC---CTTCSEEECCSSCCSSCCCC-----CTTCCEEECCSS-CCSCCCSCC-
T ss_pred             cCCCEEEeCCCCC-C---------CCCCC---CCCCCEEECCCCCCcccccc-----hhhhhhhhhhhc-ccchhhhhc-
Confidence            4688888865531 1         11221   36889999988888888864     357888888875 556665432 


Q ss_pred             ccccceeeccccccceecCccccCCCCCCCCCCCceeeccCC
Q 048322          221 LSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFENL  262 (498)
Q Consensus       221 l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~  262 (498)
                       +.|++|+++++ .+..+|. +      ..+++|+.|++.++
T Consensus        98 -~~L~~L~L~~n-~l~~lp~-~------~~l~~L~~L~l~~~  130 (353)
T d1jl5a_          98 -PLLEYLGVSNN-QLEKLPE-L------QNSSFLKIIDVDNN  130 (353)
T ss_dssp             -TTCCEEECCSS-CCSSCCC-C------TTCTTCCEEECCSS
T ss_pred             -ccccccccccc-ccccccc-h------hhhccceeeccccc
Confidence             36888888875 4666663 1      24788888888765

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.45  E-value=7.7e-13  Score=128.43  Aligned_cols=77  Identities=12%  Similarity=0.162  Sum_probs=62.6

Q ss_pred             CCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCCCCCccccceeeccccccceecCccccCCCCCCCCCC
Q 048322          174 KCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPSLGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPS  253 (498)
Q Consensus       174 ~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~  253 (498)
                      .+|++|++++++...+. .+.  .+++|++|++++| .++.+|+++++++|++|+++++. +..++.       +..+++
T Consensus        44 ~~l~~L~l~~~~I~~l~-gl~--~L~nL~~L~Ls~N-~l~~l~~l~~L~~L~~L~L~~n~-i~~i~~-------l~~l~~  111 (384)
T d2omza2          44 DQVTTLQADRLGIKSID-GVE--YLNNLTQINFSNN-QLTDITPLKNLTKLVDILMNNNQ-IADITP-------LANLTN  111 (384)
T ss_dssp             TTCCEEECCSSCCCCCT-TGG--GCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSC-CCCCGG-------GTTCTT
T ss_pred             CCCCEEECCCCCCCCcc-ccc--cCCCCCEEeCcCC-cCCCCccccCCcccccccccccc-cccccc-------cccccc
Confidence            67999999999887764 354  5999999999996 78899999999999999999964 555542       235888


Q ss_pred             CceeeccCC
Q 048322          254 LKILRFENL  262 (498)
Q Consensus       254 L~~L~l~~~  262 (498)
                      |+.|++.++
T Consensus       112 L~~L~~~~~  120 (384)
T d2omza2         112 LTGLTLFNN  120 (384)
T ss_dssp             CCEEECCSS
T ss_pred             ccccccccc
Confidence            999888654

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.44  E-value=1.9e-12  Score=121.72  Aligned_cols=256  Identities=15%  Similarity=0.182  Sum_probs=171.2

Q ss_pred             CCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCC--CCCccccceeeccccccceecCccccCCCCCCCCC
Q 048322          175 CIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPS--LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFP  252 (498)
Q Consensus       175 ~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~--i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~  252 (498)
                      ..+.++-++.+..++|..+.    +++++|+|++| .++.+|+  +..+++|++|+++++. +..++...+.     .++
T Consensus        11 ~~~~~~C~~~~L~~lP~~l~----~~l~~L~Ls~N-~i~~l~~~~f~~l~~L~~L~l~~n~-~~~i~~~~f~-----~l~   79 (305)
T d1xkua_          11 HLRVVQCSDLGLEKVPKDLP----PDTALLDLQNN-KITEIKDGDFKNLKNLHTLILINNK-ISKISPGAFA-----PLV   79 (305)
T ss_dssp             ETTEEECTTSCCCSCCCSCC----TTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSC-CCCBCTTTTT-----TCT
T ss_pred             cCCEEEecCCCCCccCCCCC----CCCCEEECcCC-cCCCcChhHhhcccccccccccccc-ccccchhhhh-----CCC
Confidence            45677777777888898664    68999999996 6888885  8899999999999865 5566544333     588


Q ss_pred             CCceeeccCCCccccccccccCCccccCCCccceeeeccCCCccccCCCCcchHHHHHHhcccccccCCCCccccEEEec
Q 048322          253 SLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSYPRLCRLEVD  332 (498)
Q Consensus       253 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~L~l~  332 (498)
                      +|+.|++.++ .++.+...        .++.|..|.+.++ .+. .++..                .+.....+..+...
T Consensus        80 ~L~~L~l~~n-~l~~l~~~--------~~~~l~~L~~~~n-~l~-~l~~~----------------~~~~~~~~~~l~~~  132 (305)
T d1xkua_          80 KLERLYLSKN-QLKELPEK--------MPKTLQELRVHEN-EIT-KVRKS----------------VFNGLNQMIVVELG  132 (305)
T ss_dssp             TCCEEECCSS-CCSBCCSS--------CCTTCCEEECCSS-CCC-BBCHH----------------HHTTCTTCCEEECC
T ss_pred             ccCEecccCC-ccCcCccc--------hhhhhhhhhcccc-chh-hhhhh----------------hhhccccccccccc
Confidence            9999999877 45554421        1567888888766 332 23210                12224455566666


Q ss_pred             CCCcceec----CCCCCCCccEEEEeccEeeeecCCCCccCCCCCCcCCCCC-CCCCeEEecCC--------CCCCCCCc
Q 048322          333 ECKELVCR----TPIDSKLIKFMTISNSSLDMIGCKGMLYDSQAGSSLPKPM-TTTNVLEFGKL--------LEPGFQIL  399 (498)
Q Consensus       333 ~~~~~~~~----~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~l~~lp~~l-~~L~~L~i~~~--------~~~~lp~L  399 (498)
                      .+......    ....+++|+.+++++|               .+..+|..+ ++|+.|++++|        .+..++.+
T Consensus       133 ~n~~~~~~~~~~~~~~l~~L~~l~l~~n---------------~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l  197 (305)
T d1xkua_         133 TNPLKSSGIENGAFQGMKKLSYIRIADT---------------NITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNL  197 (305)
T ss_dssp             SSCCCGGGBCTTGGGGCTTCCEEECCSS---------------CCCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTC
T ss_pred             cccccccCCCccccccccccCccccccC---------------CccccCcccCCccCEEECCCCcCCCCChhHhhccccc
Confidence            55433321    1233788999998776               344455433 78999999998        34567779


Q ss_pred             cEEEEcCCCCCCCccccCCCCccCCCCCCcCeEeeecCCCCCcCCCC-CccccccceeeccCchhHhh---hccCCCCCC
Q 048322          400 ETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPNLTLFPEV-GLPSSLLDLYVNNCPRLKKV---CKRDQGKEW  475 (498)
Q Consensus       400 ~~L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~~l~~lp~~-~~~~sL~~L~i~~c~~l~~~---~~~~~~~~~  475 (498)
                      +.|.++++ .++.+.     +.++..+++|++|++++| +++++|.. .-+++|++|+++++. ++..   .-...+ -.
T Consensus       198 ~~L~~s~n-~l~~~~-----~~~~~~l~~L~~L~L~~N-~L~~lp~~l~~l~~L~~L~Ls~N~-i~~i~~~~f~~~~-~~  268 (305)
T d1xkua_         198 AKLGLSFN-SISAVD-----NGSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNNN-ISAIGSNDFCPPG-YN  268 (305)
T ss_dssp             CEEECCSS-CCCEEC-----TTTGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSSC-CCCCCTTSSSCSS-CC
T ss_pred             cccccccc-cccccc-----cccccccccceeeecccc-cccccccccccccCCCEEECCCCc-cCccChhhccCcc-hh
Confidence            99999885 454321     567788999999999997 78999875 445899999999984 4432   111101 11


Q ss_pred             CCcCCCCeEEECceEee
Q 048322          476 PKIAHIPWVVIDGKFIY  492 (498)
Q Consensus       476 ~~i~hi~~~~~~~~~~~  492 (498)
                      ....++..+.+.+..++
T Consensus       269 ~~~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         269 TKKASYSGVSLFSNPVQ  285 (305)
T ss_dssp             TTSCCCSEEECCSSSSC
T ss_pred             cccCCCCEEECCCCcCc
Confidence            23345666777665544

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=1.1e-11  Score=113.89  Aligned_cols=99  Identities=15%  Similarity=0.126  Sum_probs=58.6

Q ss_pred             CCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCC--CCCccccceeeccccccceecCccccCCCCCCCC
Q 048322          174 KCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPS--LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPF  251 (498)
Q Consensus       174 ~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~--i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~  251 (498)
                      ..+..++.++.+.+.+|..+.    +++++|+|++| .++.+|+  +..+++|++|+++++ .++.++..       ..+
T Consensus        10 ~~~~~v~C~~~~L~~iP~~lp----~~l~~L~Ls~N-~i~~l~~~~f~~l~~L~~L~L~~N-~l~~l~~~-------~~l   76 (266)
T d1p9ag_          10 ASHLEVNCDKRNLTALPPDLP----KDTTILHLSEN-LLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVD-------GTL   76 (266)
T ss_dssp             TTCCEEECTTSCCSSCCSCCC----TTCCEEECTTS-CCSEEEGGGGTTCTTCCEEECTTS-CCCEEECC-------SCC
T ss_pred             CCCeEEEccCCCCCeeCcCcC----cCCCEEECcCC-cCCCcCHHHhhccccccccccccc-cccccccc-------ccc
Confidence            345556666667777776543    46778888774 5666663  677777888877775 46666531       136


Q ss_pred             CCCceeeccCCCccccccccccCCccccCCCccceeeeccC
Q 048322          252 PSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKC  292 (498)
Q Consensus       252 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c  292 (498)
                      ++|++|+++++ .++..... .     ..+++|+.|+++++
T Consensus        77 ~~L~~L~Ls~N-~l~~~~~~-~-----~~l~~L~~L~l~~~  110 (266)
T d1p9ag_          77 PVLGTLDLSHN-QLQSLPLL-G-----QTLPALTVLDVSFN  110 (266)
T ss_dssp             TTCCEEECCSS-CCSSCCCC-T-----TTCTTCCEEECCSS
T ss_pred             ccccccccccc-cccccccc-c-----cccccccccccccc
Confidence            66666666654 23322211 1     12566666666655

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.36  E-value=2.3e-12  Score=121.58  Aligned_cols=212  Identities=19%  Similarity=0.119  Sum_probs=150.9

Q ss_pred             CCccEEeEeCCCCCC--CCCC-CCCccccceeeccccccce-ecCccccCCCCCCCCCCCceeeccCCCccccccccccC
Q 048322          199 SKIEFLELENCNNCV--SLPS-LGLLSSLKHLAVKGLKKLK-SIESEVYGEGFSMPFPSLKILRFENLPEWWHWDTDIKG  274 (498)
Q Consensus       199 ~~L~~L~l~~c~~~~--~lp~-i~~l~~L~~L~l~~~~~l~-~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~  274 (498)
                      .+++.|+|+++..-+  .+|+ +++|++|++|++++++.+. .+|..+..      +++|++|+++++ .+....+....
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~------L~~L~~L~Ls~N-~l~~~~~~~~~  122 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAK------LTQLHYLYITHT-NVSGAIPDFLS  122 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGG------CTTCSEEEEEEE-CCEEECCGGGG
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCcccccccccccccccccccccccc------ccccchhhhccc-ccccccccccc
Confidence            469999999975443  5777 9999999999999877776 78876654      999999999877 44444332222


Q ss_pred             CccccCCCccceeeeccCCCccccCCCCcchHHHHHHhcccccccCCCCccccEEEecCCCcce-ec-CCCCCCC-ccEE
Q 048322          275 NVHVDIFPRLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSYPRLCRLEVDECKELV-CR-TPIDSKL-IKFM  351 (498)
Q Consensus       275 ~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~L~l~~~~~~~-~~-~~~~~~~-L~~L  351 (498)
                           .+++|+.+++..+... +.+|.                 .+..+++|+.++++++.... ++ ....+.+ ++.+
T Consensus       123 -----~~~~L~~l~l~~N~~~-~~~p~-----------------~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l  179 (313)
T d1ogqa_         123 -----QIKTLVTLDFSYNALS-GTLPP-----------------SISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSM  179 (313)
T ss_dssp             -----GCTTCCEEECCSSEEE-SCCCG-----------------GGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEE
T ss_pred             -----chhhhccccccccccc-ccCch-----------------hhccCcccceeecccccccccccccccccccccccc
Confidence                 2889999999987544 36665                 45567899999999987654 22 2333445 4788


Q ss_pred             EEeccEeeeecCCCCccCCCCCCcCCCCC--CCCCeEEecCC--------CCCCCCCccEEEEcCCCCCCCccccCCCCc
Q 048322          352 TISNSSLDMIGCKGMLYDSQAGSSLPKPM--TTTNVLEFGKL--------LEPGFQILETLVIGNSEQLKPWRQGRGLSM  421 (498)
Q Consensus       352 ~l~~~~l~~~~~~~l~~~~~~l~~lp~~l--~~L~~L~i~~~--------~~~~lp~L~~L~l~~c~~L~~l~~l~~l~~  421 (498)
                      .+++|.+.....              ..+  ..+..+++..+        ..+.+++|+.+.+.++. +...      +.
T Consensus       180 ~~~~n~l~~~~~--------------~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~-l~~~------~~  238 (313)
T d1ogqa_         180 TISRNRLTGKIP--------------PTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNS-LAFD------LG  238 (313)
T ss_dssp             ECCSSEEEEECC--------------GGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSE-ECCB------GG
T ss_pred             cccccccccccc--------------ccccccccccccccccccccccccccccccccccccccccc-cccc------cc
Confidence            888876654322              111  23345666666        34667889999998864 3322      55


Q ss_pred             cCCCCCCcCeEeeecCCCCCcCCCC-CccccccceeeccCc
Q 048322          422 GFQRLTSLQSLKIWNCPNLTLFPEV-GLPSSLLDLYVNNCP  461 (498)
Q Consensus       422 ~l~~l~~L~~L~l~~c~~l~~lp~~-~~~~sL~~L~i~~c~  461 (498)
                      .+..+++|+.|++++|.....+|.. +.+++|++|+++++.
T Consensus       239 ~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~  279 (313)
T d1ogqa_         239 KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN  279 (313)
T ss_dssp             GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSE
T ss_pred             ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCc
Confidence            6788899999999997544488875 456899999999874

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=1.7e-11  Score=113.76  Aligned_cols=97  Identities=16%  Similarity=0.210  Sum_probs=51.3

Q ss_pred             EEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCC--CCCccccceeeccccccceecCccccCCCCCCCCCCCcee
Q 048322          180 AIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPS--LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKIL  257 (498)
Q Consensus       180 ~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~--i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L  257 (498)
                      ..++.+..++|..+.    +++++|+|++| .++.+|+  +..+++|++|+++++ .+..++...+.     .++.++.+
T Consensus        17 ~c~~~~L~~iP~~ip----~~~~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~ls~n-~l~~i~~~~~~-----~~~~~~~l   85 (284)
T d1ozna_          17 SCPQQGLQAVPVGIP----AASQRIFLHGN-RISHVPAASFRACRNLTILWLHSN-VLARIDAAAFT-----GLALLEQL   85 (284)
T ss_dssp             ECCSSCCSSCCTTCC----TTCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTT-----TCTTCCEE
T ss_pred             EcCCCCCCccCCCCC----CCCCEEECcCC-cCCCCCHHHhhccccccccccccc-ccccccccccc-----cccccccc
Confidence            344444555555332    35666777664 4566664  666666777776653 45555544433     34555555


Q ss_pred             eccCCCccccccccccCCccccCCCccceeeeccC
Q 048322          258 RFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKC  292 (498)
Q Consensus       258 ~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c  292 (498)
                      .+.....+....+.....     +++|++|++.++
T Consensus        86 ~~~~~~~~~~l~~~~~~~-----l~~L~~L~l~~n  115 (284)
T d1ozna_          86 DLSDNAQLRSVDPATFHG-----LGRLHTLHLDRC  115 (284)
T ss_dssp             ECCSCTTCCCCCTTTTTT-----CTTCCEEECTTS
T ss_pred             ccccccccccccchhhcc-----cccCCEEecCCc
Confidence            554444444433222222     566666666655

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=8.1e-12  Score=114.81  Aligned_cols=169  Identities=17%  Similarity=0.122  Sum_probs=121.8

Q ss_pred             CCCceEEEeecCCCCCCcc-ccCCCCCCccEEeEeCCCCCCCCCCCCCccccceeeccccccceecCccccCCCCCCCCC
Q 048322          174 KCIKKVAIRNYGGARFPLW-IGDPLFSKIEFLELENCNNCVSLPSLGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFP  252 (498)
Q Consensus       174 ~~L~~L~l~~~~~~~~p~~-~~~~~l~~L~~L~l~~c~~~~~lp~i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~  252 (498)
                      +++++|+++++....+|.. +.  .+++|++|+|++| .++.+|.++.+++|++|+++++ .++.++..+.      .++
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~--~l~~L~~L~L~~N-~l~~l~~~~~l~~L~~L~Ls~N-~l~~~~~~~~------~l~  100 (266)
T d1p9ag_          31 KDTTILHLSENLLYTFSLATLM--PYTRLTQLNLDRA-ELTKLQVDGTLPVLGTLDLSHN-QLQSLPLLGQ------TLP  100 (266)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGT--TCTTCCEEECTTS-CCCEEECCSCCTTCCEEECCSS-CCSSCCCCTT------TCT
T ss_pred             cCCCEEECcCCcCCCcCHHHhh--ccccccccccccc-cccccccccccccccccccccc-cccccccccc------ccc
Confidence            6899999999988887743 44  5899999999986 6788888889999999999985 4666655433      488


Q ss_pred             CCceeeccCCCccccccccccCCccccCCCccceeeeccCCCccccCCCCcchHHHHHHhcccccccCCCCccccEEEec
Q 048322          253 SLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSYPRLCRLEVD  332 (498)
Q Consensus       253 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~L~l~  332 (498)
                      +|+.|+++++. +........     ..++++++|.+.++ .+. .+|..                .+..+++|+.|+++
T Consensus       101 ~L~~L~l~~~~-~~~~~~~~~-----~~l~~l~~L~l~~n-~l~-~l~~~----------------~~~~l~~l~~l~l~  156 (266)
T d1p9ag_         101 ALTVLDVSFNR-LTSLPLGAL-----RGLGELQELYLKGN-ELK-TLPPG----------------LLTPTPKLEKLSLA  156 (266)
T ss_dssp             TCCEEECCSSC-CCCCCSSTT-----TTCTTCCEEECTTS-CCC-CCCTT----------------TTTTCTTCCEEECT
T ss_pred             ccccccccccc-cceeecccc-----cccccccccccccc-ccc-eeccc----------------cccccccchhcccc
Confidence            99999998763 233322222     22788999999887 454 55531                34457889999999


Q ss_pred             CCCcceecC--CCCCCCccEEEEeccEeeeecCCCCccCCCCCCcCCCCC---CCCCeEEecCC
Q 048322          333 ECKELVCRT--PIDSKLIKFMTISNSSLDMIGCKGMLYDSQAGSSLPKPM---TTTNVLEFGKL  391 (498)
Q Consensus       333 ~~~~~~~~~--~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~l~~lp~~l---~~L~~L~i~~~  391 (498)
                      +|....++.  ...+++|++|++++|               .++++|.++   ++|+.|++++|
T Consensus       157 ~N~l~~~~~~~~~~l~~L~~L~Ls~N---------------~L~~lp~~~~~~~~L~~L~L~~N  205 (266)
T d1p9ag_         157 NNNLTELPAGLLNGLENLDTLLLQEN---------------SLYTIPKGFFGSHLLPFAFLHGN  205 (266)
T ss_dssp             TSCCSCCCTTTTTTCTTCCEEECCSS---------------CCCCCCTTTTTTCCCSEEECCSC
T ss_pred             cccccccCccccccccccceeecccC---------------CCcccChhHCCCCCCCEEEecCC
Confidence            987666543  344888999999876               566666544   56666666666

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.32  E-value=4.5e-12  Score=113.64  Aligned_cols=100  Identities=17%  Similarity=0.187  Sum_probs=61.1

Q ss_pred             CCccccEEEecCCCcceecCCCCCCCccEEEEeccEeeeecCCCCccCCCCCCcCCCCCCCCCeEEecCCCCCCCCCccE
Q 048322          322 SYPRLCRLEVDECKELVCRTPIDSKLIKFMTISNSSLDMIGCKGMLYDSQAGSSLPKPMTTTNVLEFGKLLEPGFQILET  401 (498)
Q Consensus       322 ~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~l~~lp~~l~~L~~L~i~~~~~~~lp~L~~  401 (498)
                      ..+.+..+.+.++...........++|+.|.+++|.+               ...+              .++.+++|+.
T Consensus       127 ~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~---------------~~~~--------------~l~~l~~L~~  177 (227)
T d1h6ua2         127 GLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQV---------------SDLT--------------PLANLSKLTT  177 (227)
T ss_dssp             TCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCC---------------CCCG--------------GGTTCTTCCE
T ss_pred             cccchhhhhchhhhhchhhhhcccccccccccccccc---------------ccch--------------hhccccccee
Confidence            3556667777666554443344455666666654311               0000              2355677888


Q ss_pred             EEEcCCCCCCCccccCCCCccCCCCCCcCeEeeecCCCCCcCCCCCccccccceeecc
Q 048322          402 LVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPNLTLFPEVGLPSSLLDLYVNN  459 (498)
Q Consensus       402 L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~sL~~L~i~~  459 (498)
                      |+++++ .++.+      + .+..+++|++|++++| ++++++.....++|+.|++++
T Consensus       178 L~Ls~n-~l~~l------~-~l~~l~~L~~L~Ls~N-~lt~i~~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         178 LKADDN-KISDI------S-PLASLPNLIEVHLKNN-QISDVSPLANTSNLFIVTLTN  226 (227)
T ss_dssp             EECCSS-CCCCC------G-GGGGCTTCCEEECTTS-CCCBCGGGTTCTTCCEEEEEE
T ss_pred             cccCCC-ccCCC------h-hhcCCCCCCEEECcCC-cCCCCcccccCCCCCEEEeeC
Confidence            888775 45543      3 3677888888998887 678877544457788888764

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=6.5e-11  Score=109.74  Aligned_cols=198  Identities=16%  Similarity=0.237  Sum_probs=141.3

Q ss_pred             CCCCCCCC-CCCccccceeeccccccceecCccccCCCCCCCCCCCceeeccCCCccccccccccCCccccCCCccceee
Q 048322          210 NNCVSLPS-LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELS  288 (498)
Q Consensus       210 ~~~~~lp~-i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~  288 (498)
                      ..++.+|. +.  +++++|+|+++ .++.++...+.     .+++|++|++++. .+..+.......     ++.+..+.
T Consensus        21 ~~L~~iP~~ip--~~~~~L~Ls~N-~i~~i~~~~f~-----~l~~L~~L~ls~n-~l~~i~~~~~~~-----~~~~~~l~   86 (284)
T d1ozna_          21 QGLQAVPVGIP--AASQRIFLHGN-RISHVPAASFR-----ACRNLTILWLHSN-VLARIDAAAFTG-----LALLEQLD   86 (284)
T ss_dssp             SCCSSCCTTCC--TTCSEEECTTS-CCCEECTTTTT-----TCTTCCEEECCSS-CCCEECTTTTTT-----CTTCCEEE
T ss_pred             CCCCccCCCCC--CCCCEEECcCC-cCCCCCHHHhh-----ccccccccccccc-cccccccccccc-----cccccccc
Confidence            35778886 43  57899999995 68999876554     5899999999876 455544332222     67788887


Q ss_pred             eccCCCccccCCCCcchHHHHHHhcccccccCCCCccccEEEecCCCcceecC--CCCCCCccEEEEeccEeeeecCCCC
Q 048322          289 VVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSYPRLCRLEVDECKELVCRT--PIDSKLIKFMTISNSSLDMIGCKGM  366 (498)
Q Consensus       289 l~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~l~~~~~~~l  366 (498)
                      +..+..+. .++..                .+..+++|++|++.+|....+..  ....++|+.+++++|          
T Consensus        87 ~~~~~~~~-~l~~~----------------~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N----------  139 (284)
T d1ozna_          87 LSDNAQLR-SVDPA----------------TFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN----------  139 (284)
T ss_dssp             CCSCTTCC-CCCTT----------------TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS----------
T ss_pred             cccccccc-cccch----------------hhcccccCCEEecCCcccccccccccchhcccchhhhccc----------
Confidence            77666665 44421                45668899999999987655432  334788999999876          


Q ss_pred             ccCCCCCCcCCC----CCCCCCeEEecCC--------CCCCCCCccEEEEcCCCCCCCccccCCCCccCCCCCCcCeEee
Q 048322          367 LYDSQAGSSLPK----PMTTTNVLEFGKL--------LEPGFQILETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKI  434 (498)
Q Consensus       367 ~~~~~~l~~lp~----~l~~L~~L~i~~~--------~~~~lp~L~~L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l  434 (498)
                           .++.+|.    .+++|+.|++++|        .+.++++|+.+.+.++. ++.+     .|..+..+++|++|++
T Consensus       140 -----~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~-l~~i-----~~~~f~~l~~L~~L~l  208 (284)
T d1ozna_         140 -----ALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR-VAHV-----HPHAFRDLGRLMTLYL  208 (284)
T ss_dssp             -----CCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEE-----CTTTTTTCTTCCEEEC
T ss_pred             -----cccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhcc-cccc-----ChhHhhhhhhcccccc
Confidence                 3444432    3378999999998        34567789999998854 4332     2788999999999999


Q ss_pred             ecCCCCCcCCCC--CccccccceeeccC
Q 048322          435 WNCPNLTLFPEV--GLPSSLLDLYVNNC  460 (498)
Q Consensus       435 ~~c~~l~~lp~~--~~~~sL~~L~i~~c  460 (498)
                      +++ .+..++..  +-.++|+.|++++.
T Consensus       209 ~~N-~i~~~~~~~~~~~~~L~~L~l~~N  235 (284)
T d1ozna_         209 FAN-NLSALPTEALAPLRALQYLRLNDN  235 (284)
T ss_dssp             CSS-CCSCCCHHHHTTCTTCCEEECCSS
T ss_pred             ccc-ccccccccccccccccCEEEecCC
Confidence            985 66777653  34578999999863

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=1.9e-10  Score=103.82  Aligned_cols=217  Identities=15%  Similarity=0.157  Sum_probs=126.5

Q ss_pred             CceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCC--CCCccccceeeccccccceecCccccCCCCCCCCCC
Q 048322          176 IKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPS--LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPS  253 (498)
Q Consensus       176 L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~--i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~  253 (498)
                      .+.++.++.+...+|..+    .+++++|+++++ .++.+|.  +.++++|++|+++++.....++...+.     .+++
T Consensus        10 ~~~i~c~~~~l~~iP~~l----~~~l~~L~Ls~n-~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~-----~l~~   79 (242)
T d1xwdc1          10 NRVFLCQESKVTEIPSDL----PRNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFS-----NLPK   79 (242)
T ss_dssp             SSEEEEESCSCSSCCSCS----CSCCSEEEEESC-CCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEE-----SCTT
T ss_pred             CCEEEEeCCCCCCcCCCC----CCCCCEEECcCC-cCCccChhHhhccchhhhhhhccccccceeeccccc-----cccc
Confidence            367777777777888654    357899999985 5777775  788999999999887655666654443     4778


Q ss_pred             CceeeccCCCccccccccccCCccccCCCccceeeeccCCCccccCCCCcchHHHHHHhcccccccCCCCccccEEEecC
Q 048322          254 LKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSYPRLCRLEVDE  333 (498)
Q Consensus       254 L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~L~l~~  333 (498)
                      ++++.+..+.++..+.++....     +++|++|++.++ .+. ..+..               ..+..+..+..+...+
T Consensus        80 l~~l~~~~~n~l~~~~~~~~~~-----l~~L~~l~l~~~-~l~-~~~~~---------------~~~~~l~~l~~~~~~n  137 (242)
T d1xwdc1          80 LHEIRIEKANNLLYINPEAFQN-----LPNLQYLLISNT-GIK-HLPDV---------------HKIHSLQKVLLDIQDN  137 (242)
T ss_dssp             CCEEEEECCTTCCEECTTSEEC-----CTTCCEEEEESC-CCC-SCCCC---------------TTTCBSSCEEEEEESC
T ss_pred             cccccccccccccccccccccc-----cccccccccchh-hhc-ccccc---------------cccccccccccccccc
Confidence            8888777665655554332222     788888888877 343 33320               0222344444444444


Q ss_pred             CCcceecCCC--C-CCCccEEEEeccEeeeecCCCCccCCCCCCcCCCCCCCCCeEEecCCCCCCCCCccEEEEcCCCCC
Q 048322          334 CKELVCRTPI--D-SKLIKFMTISNSSLDMIGCKGMLYDSQAGSSLPKPMTTTNVLEFGKLLEPGFQILETLVIGNSEQL  410 (498)
Q Consensus       334 ~~~~~~~~~~--~-~~~L~~L~l~~~~l~~~~~~~l~~~~~~l~~lp~~l~~L~~L~i~~~~~~~lp~L~~L~l~~c~~L  410 (498)
                      +....++...  . ...++.|++.++               .+..++..             ....+.++++....++.+
T Consensus       138 ~~l~~i~~~~~~~~~~~l~~L~l~~n---------------~l~~i~~~-------------~~~~~~l~~~~~l~~n~l  189 (242)
T d1xwdc1         138 INIHTIERNSFVGLSFESVILWLNKN---------------GIQEIHNC-------------AFNGTQLDELNLSDNNNL  189 (242)
T ss_dssp             TTCCEECTTSSTTSBSSCEEEECCSS---------------CCCEECTT-------------TTTTCCEEEEECTTCTTC
T ss_pred             cccccccccccccccccceeeecccc---------------cccccccc-------------cccchhhhcccccccccc
Confidence            3333322111  1 224444555433               22222111             122344555655555666


Q ss_pred             CCccccCCCCc-cCCCCCCcCeEeeecCCCCCcCCCCCccccccceeeccC
Q 048322          411 KPWRQGRGLSM-GFQRLTSLQSLKIWNCPNLTLFPEVGLPSSLLDLYVNNC  460 (498)
Q Consensus       411 ~~l~~l~~l~~-~l~~l~~L~~L~l~~c~~l~~lp~~~~~~sL~~L~i~~c  460 (498)
                      +.+      |. .+.++++|++|+++++ +++.+|...+ .+|..|..-++
T Consensus       190 ~~l------~~~~f~~l~~L~~L~Ls~N-~l~~l~~~~~-~~l~~L~~l~~  232 (242)
T d1xwdc1         190 EEL------PNDVFHGASGPVILDISRT-RIHSLPSYGL-ENLKKLRARST  232 (242)
T ss_dssp             CCC------CTTTTTTSCCCSEEECTTS-CCCCCCSSSC-TTCCEEESSSE
T ss_pred             ccc------cHHHhcCCCCCCEEECCCC-cCCccCHHHH-cCCcccccCcC
Confidence            654      54 4678899999999885 5888887533 34444443333

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.20  E-value=1.5e-10  Score=110.25  Aligned_cols=261  Identities=19%  Similarity=0.147  Sum_probs=142.4

Q ss_pred             cCCcccEEEEecCCCCCCcChhhHHHhhhcCCCCCCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCCCC
Q 048322          140 KLNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPSLG  219 (498)
Q Consensus       140 ~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~i~  219 (498)
                      ..+|++|+|+++.- .         .+++.   +.+|+.|.+.++....++..     .+.|++|++++| .+..+|.++
T Consensus        57 ~~~L~~L~Ls~N~l-~---------~lp~~---~~~L~~L~l~~n~l~~l~~l-----p~~L~~L~L~~n-~l~~lp~~~  117 (353)
T d1jl5a_          57 PPHLESLVASCNSL-T---------ELPEL---PQSLKSLLVDNNNLKALSDL-----PPLLEYLGVSNN-QLEKLPELQ  117 (353)
T ss_dssp             CTTCSEEECCSSCC-S---------SCCCC---CTTCCEEECCSSCCSCCCSC-----CTTCCEEECCSS-CCSSCCCCT
T ss_pred             CCCCCEEECCCCCC-c---------ccccc---hhhhhhhhhhhcccchhhhh-----cccccccccccc-ccccccchh
Confidence            35899999987641 1         12222   36899999999988877652     246999999986 688999999


Q ss_pred             CccccceeeccccccceecCccccC-------------CCCCCCCCCCceeeccCCCcccccccc-------------cc
Q 048322          220 LLSSLKHLAVKGLKKLKSIESEVYG-------------EGFSMPFPSLKILRFENLPEWWHWDTD-------------IK  273 (498)
Q Consensus       220 ~l~~L~~L~l~~~~~l~~i~~~~~~-------------~~~~~~~~~L~~L~l~~~~~l~~~~~~-------------~~  273 (498)
                      .+++|++|++.++. +...+.....             ......++.++.+.+.++.. ..+...             ..
T Consensus       118 ~l~~L~~L~l~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~-~~~~~~~~~~~~l~~~~~~~~  195 (353)
T d1jl5a_         118 NSSFLKIIDVDNNS-LKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSL-KKLPDLPLSLESIVAGNNILE  195 (353)
T ss_dssp             TCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCC-SSCCCCCTTCCEEECCSSCCS
T ss_pred             hhccceeecccccc-ccccccccccccchhhccccccccccccccccceecccccccc-ccccccccccccccccccccc
Confidence            99999999998753 3333321100             01122233444444433211 110000             00


Q ss_pred             CCccccCCCccceeeeccCCCccccCCCCcchHHHHHHhcccccccCCCCccccEEEecCCCcceecCCCCCCCccEEEE
Q 048322          274 GNVHVDIFPRLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSYPRLCRLEVDECKELVCRTPIDSKLIKFMTI  353 (498)
Q Consensus       274 ~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l  353 (498)
                      .......++.|+.+.++++.. . .+|.                    ...++..+.+..+.......  .+.++....+
T Consensus       196 ~~~~~~~l~~L~~l~l~~n~~-~-~~~~--------------------~~~~l~~~~~~~~~~~~~~~--~~~~l~~~~~  251 (353)
T d1jl5a_         196 ELPELQNLPFLTTIYADNNLL-K-TLPD--------------------LPPSLEALNVRDNYLTDLPE--LPQSLTFLDV  251 (353)
T ss_dssp             SCCCCTTCTTCCEEECCSSCC-S-SCCS--------------------CCTTCCEEECCSSCCSCCCC--CCTTCCEEEC
T ss_pred             ccccccccccccccccccccc-c-cccc--------------------cccccccccccccccccccc--cccccccccc
Confidence            000011123333333333211 0 1111                    13444455544443322111  1334444444


Q ss_pred             eccEee-eecCCCCc----cCCCCCCcCCCCCCCCCeEEecCCCC----CCCCCccEEEEcCCCCCCCccccCCCCccCC
Q 048322          354 SNSSLD-MIGCKGML----YDSQAGSSLPKPMTTTNVLEFGKLLE----PGFQILETLVIGNSEQLKPWRQGRGLSMGFQ  424 (498)
Q Consensus       354 ~~~~l~-~~~~~~l~----~~~~~l~~lp~~l~~L~~L~i~~~~~----~~lp~L~~L~l~~c~~L~~l~~l~~l~~~l~  424 (498)
                      ..+.+. +...+...    .....+..++..+++|++|++++|.+    ..+++|+.|++++| .++.+      |..  
T Consensus       252 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~L~~L~L~~N-~L~~l------~~~--  322 (353)
T d1jl5a_         252 SENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPPRLERLIASFN-HLAEV------PEL--  322 (353)
T ss_dssp             CSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSS-CCSCC------CCC--
T ss_pred             ccccccccccccchhcccccccCccccccccCCCCCEEECCCCccCccccccCCCCEEECCCC-cCCcc------ccc--
Confidence            332111 00010000    12234455566668999999999932    34677999999875 46543      543  


Q ss_pred             CCCCcCeEeeecCCCCCcCCCCCccccccceeec
Q 048322          425 RLTSLQSLKIWNCPNLTLFPEVGLPSSLLDLYVN  458 (498)
Q Consensus       425 ~l~~L~~L~l~~c~~l~~lp~~~~~~sL~~L~i~  458 (498)
                       +++|++|++++|+ ++++|.  +|.+|+.|.+.
T Consensus       323 -~~~L~~L~L~~N~-L~~lp~--~~~~L~~L~~~  352 (353)
T d1jl5a_         323 -PQNLKQLHVEYNP-LREFPD--IPESVEDLRMN  352 (353)
T ss_dssp             -CTTCCEEECCSSC-CSSCCC--CCTTCCEEECC
T ss_pred             -cCCCCEEECcCCc-CCCCCc--cccccCeeECc
Confidence             4689999999985 999996  67889999875

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.20  E-value=9.8e-11  Score=104.65  Aligned_cols=186  Identities=15%  Similarity=0.150  Sum_probs=110.8

Q ss_pred             CCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCCCCCccccceeeccccccceecCccccCCCCCCCCCC
Q 048322          174 KCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPSLGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPS  253 (498)
Q Consensus       174 ~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~  253 (498)
                      .+|+.|.+.+++...++ .+.  .+++|++|++++| .+..++++..+++|+++.+.++. ++.++.       +..+++
T Consensus        41 ~~L~~L~l~~~~i~~l~-~l~--~l~~L~~L~ls~n-~i~~~~~l~~l~~l~~l~~~~n~-~~~i~~-------l~~l~~  108 (227)
T d1h6ua2          41 DGITTLSAFGTGVTTIE-GVQ--YLNNLIGLELKDN-QITDLAPLKNLTKITELELSGNP-LKNVSA-------IAGLQS  108 (227)
T ss_dssp             HTCCEEECTTSCCCCCT-TGG--GCTTCCEEECCSS-CCCCCGGGTTCCSCCEEECCSCC-CSCCGG-------GTTCTT
T ss_pred             CCcCEEECCCCCCCcch-hHh--cCCCCcEeecCCc-eeecccccccccccccccccccc-cccccc-------cccccc
Confidence            56677777777666664 344  5777777777775 45666667777777777777642 444431       123677


Q ss_pred             CceeeccCCCccccccccccCCccccCCCccceeeeccCCCccccCCCCcchHHHHHHhcccccccCCCCccccEEEecC
Q 048322          254 LKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSYPRLCRLEVDE  333 (498)
Q Consensus       254 L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~L~l~~  333 (498)
                      |+.+.+.++.. ....       .+...+.+..+.+.+|. +. ..+                  .+...++|++|.+.+
T Consensus       109 L~~l~l~~~~~-~~~~-------~~~~~~~~~~l~~~~~~-~~-~~~------------------~~~~~~~L~~L~l~~  160 (227)
T d1h6ua2         109 IKTLDLTSTQI-TDVT-------PLAGLSNLQVLYLDLNQ-IT-NIS------------------PLAGLTNLQYLSIGN  160 (227)
T ss_dssp             CCEEECTTSCC-CCCG-------GGTTCTTCCEEECCSSC-CC-CCG------------------GGGGCTTCCEEECCS
T ss_pred             ccccccccccc-cccc-------hhccccchhhhhchhhh-hc-hhh------------------hhccccccccccccc
Confidence            77777765532 1111       11125666777776552 21 111                  223456778888887


Q ss_pred             CCcceecCCCCCCCccEEEEeccEeeeecCCCCccCCCCCCcCCCCCCCCCeEEecCCCCCCCCCccEEEEcCCCCCCCc
Q 048322          334 CKELVCRTPIDSKLIKFMTISNSSLDMIGCKGMLYDSQAGSSLPKPMTTTNVLEFGKLLEPGFQILETLVIGNSEQLKPW  413 (498)
Q Consensus       334 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~l~~lp~~l~~L~~L~i~~~~~~~lp~L~~L~l~~c~~L~~l  413 (498)
                      |..........+++|+.|++++|               .++.++              .+..+|+|++|++++| +++.+
T Consensus       161 n~~~~~~~l~~l~~L~~L~Ls~n---------------~l~~l~--------------~l~~l~~L~~L~Ls~N-~lt~i  210 (227)
T d1h6ua2         161 AQVSDLTPLANLSKLTTLKADDN---------------KISDIS--------------PLASLPNLIEVHLKNN-QISDV  210 (227)
T ss_dssp             SCCCCCGGGTTCTTCCEEECCSS---------------CCCCCG--------------GGGGCTTCCEEECTTS-CCCBC
T ss_pred             cccccchhhcccccceecccCCC---------------ccCCCh--------------hhcCCCCCCEEECcCC-cCCCC
Confidence            76655555556778888888765               222222              1234566777777776 45543


Q ss_pred             cccCCCCccCCCCCCcCeEeeec
Q 048322          414 RQGRGLSMGFQRLTSLQSLKIWN  436 (498)
Q Consensus       414 ~~l~~l~~~l~~l~~L~~L~l~~  436 (498)
                            + .++++++|++|++++
T Consensus       211 ------~-~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         211 ------S-PLANTSNLFIVTLTN  226 (227)
T ss_dssp             ------G-GGTTCTTCCEEEEEE
T ss_pred             ------c-ccccCCCCCEEEeeC
Confidence                  3 366788888888864

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.18  E-value=7.8e-11  Score=103.00  Aligned_cols=35  Identities=14%  Similarity=0.091  Sum_probs=18.3

Q ss_pred             CCCccccEEEecCCCcceecCCCCCCCccEEEEec
Q 048322          321 SSYPRLCRLEVDECKELVCRTPIDSKLIKFMTISN  355 (498)
Q Consensus       321 ~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~  355 (498)
                      ..+++|+.|++++|....++....+++|+.|++.+
T Consensus       125 ~~l~~L~~L~l~~n~l~~~~~l~~~~~L~~L~l~~  159 (199)
T d2omxa2         125 KNLTNLNRLELSSNTISDISALSGLTSLQQLNFSS  159 (199)
T ss_dssp             TTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCS
T ss_pred             chhhhhHHhhhhhhhhccccccccccccccccccc
Confidence            34566777777666544333333344444444443

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.17  E-value=1.2e-10  Score=101.68  Aligned_cols=143  Identities=13%  Similarity=0.165  Sum_probs=74.5

Q ss_pred             CCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCCCCCccccceeeccccccceecCccccCCCCCCCCCC
Q 048322          174 KCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPSLGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPS  253 (498)
Q Consensus       174 ~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~  253 (498)
                      .++++|++++++...++. +.  .+++|++|++++| .++.+++++.+++|++|+++++. +..++.       +..+++
T Consensus        40 ~~l~~L~l~~~~i~~l~~-l~--~l~nL~~L~Ls~N-~l~~~~~l~~l~~L~~L~l~~n~-~~~~~~-------l~~l~~  107 (199)
T d2omxa2          40 DQVTTLQADRLGIKSIDG-VE--YLNNLTQINFSNN-QLTDITPLKNLTKLVDILMNNNQ-IADITP-------LANLTN  107 (199)
T ss_dssp             TTCCEEECTTSCCCCCTT-GG--GCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSC-CCCCGG-------GTTCTT
T ss_pred             cCCCEEECCCCCCCCccc-cc--cCCCcCcCccccc-cccCcccccCCcccccccccccc-cccccc-------cccccc
Confidence            445555555555444432 22  3566666666664 45555556666666666666542 333331       123566


Q ss_pred             CceeeccCCCccccccccccCCccccCCCccceeeeccCCCccccCCCCcchHHHHHHhcccccccCCCCccccEEEecC
Q 048322          254 LKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSYPRLCRLEVDE  333 (498)
Q Consensus       254 L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~L~l~~  333 (498)
                      |+.|++.++... ...       .+..+++|+.|++++| .+. .+|                  .+..+++|++|++.+
T Consensus       108 L~~L~l~~~~~~-~~~-------~~~~l~~L~~L~l~~n-~l~-~~~------------------~l~~~~~L~~L~l~~  159 (199)
T d2omxa2         108 LTGLTLFNNQIT-DID-------PLKNLTNLNRLELSSN-TIS-DIS------------------ALSGLTSLQQLNFSS  159 (199)
T ss_dssp             CSEEECCSSCCC-CCG-------GGTTCTTCSEEECCSS-CCC-CCG------------------GGTTCTTCSEEECCS
T ss_pred             cccccccccccc-ccc-------ccchhhhhHHhhhhhh-hhc-ccc------------------ccccccccccccccc
Confidence            666666554221 111       0112666777777665 232 222                  233456666777766


Q ss_pred             CCcceecCCCCCCCccEEEEecc
Q 048322          334 CKELVCRTPIDSKLIKFMTISNS  356 (498)
Q Consensus       334 ~~~~~~~~~~~~~~L~~L~l~~~  356 (498)
                      |....++....+++|++|++++|
T Consensus       160 n~l~~l~~l~~l~~L~~L~ls~N  182 (199)
T d2omxa2         160 NQVTDLKPLANLTTLERLDISSN  182 (199)
T ss_dssp             SCCCCCGGGTTCTTCCEEECCSS
T ss_pred             ccccCCccccCCCCCCEEECCCC
Confidence            65555554555666666666655

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.16  E-value=1.6e-10  Score=101.90  Aligned_cols=58  Identities=19%  Similarity=0.179  Sum_probs=30.1

Q ss_pred             CCCCCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCCCCCccccceeecccc
Q 048322          171 QPHKCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPSLGLLSSLKHLAVKGL  232 (498)
Q Consensus       171 ~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~i~~l~~L~~L~l~~~  232 (498)
                      ..+++|++|+++++....++. +.  .+++|++|++++| .++.+|.++.+++|+.|++.++
T Consensus        65 ~~l~~L~~L~L~~n~i~~l~~-~~--~l~~L~~L~l~~n-~i~~l~~l~~l~~L~~L~l~~~  122 (210)
T d1h6ta2          65 QYLPNVTKLFLNGNKLTDIKP-LA--NLKNLGWLFLDEN-KVKDLSSLKDLKKLKSLSLEHN  122 (210)
T ss_dssp             GGCTTCCEEECCSSCCCCCGG-GT--TCTTCCEEECCSS-CCCCGGGGTTCTTCCEEECTTS
T ss_pred             hhCCCCCEEeCCCccccCccc-cc--cCccccccccccc-cccccccccccccccccccccc
Confidence            334555555555555544443 22  3555555555553 3445555555555555555553

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=2.5e-12  Score=119.48  Aligned_cols=182  Identities=16%  Similarity=0.244  Sum_probs=91.2

Q ss_pred             CCCccEEeEeCCCCCC-CCCC-CCCccccceeecccccccee-cCccccCCCCCCCCCCCceeeccCCCcccccc-cccc
Q 048322          198 FSKIEFLELENCNNCV-SLPS-LGLLSSLKHLAVKGLKKLKS-IESEVYGEGFSMPFPSLKILRFENLPEWWHWD-TDIK  273 (498)
Q Consensus       198 l~~L~~L~l~~c~~~~-~lp~-i~~l~~L~~L~l~~~~~l~~-i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~  273 (498)
                      ..+|++|++++|.... .++. +..+++|++|.+.+|. +.. ....+      ..+++|++|++++|..++... ....
T Consensus        45 ~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~-l~~~~~~~l------~~~~~L~~L~Ls~c~~itd~~l~~l~  117 (284)
T d2astb2          45 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR-LSDPIVNTL------AKNSNLVRLNLSGCSGFSEFALQTLL  117 (284)
T ss_dssp             CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCB-CCHHHHHHH------TTCTTCSEEECTTCBSCCHHHHHHHH
T ss_pred             CCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccC-CCcHHHHHH------hcCCCCcCccccccccccccccchhh
Confidence            4567777777653221 1222 4566777777777663 221 11111      136677777777665554322 1111


Q ss_pred             CCccccCCCccceeeeccCCCccccCCCCcchHHHHHHhcccccccCCCCccccEEEecCCCc-ce---ecCC-CCCCCc
Q 048322          274 GNVHVDIFPRLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSYPRLCRLEVDECKE-LV---CRTP-IDSKLI  348 (498)
Q Consensus       274 ~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~L~l~~~~~-~~---~~~~-~~~~~L  348 (498)
                      .     .+++|++|++++|.+++.      ..+..++..         ..++|+.|++++|.. +.   +... ..+++|
T Consensus       118 ~-----~~~~L~~L~ls~c~~~~~------~~~~~~~~~---------~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L  177 (284)
T d2astb2         118 S-----SCSRLDELNLSWCFDFTE------KHVQVAVAH---------VSETITQLNLSGYRKNLQKSDLSTLVRRCPNL  177 (284)
T ss_dssp             H-----HCTTCCEEECCCCTTCCH------HHHHHHHHH---------SCTTCCEEECCSCGGGSCHHHHHHHHHHCTTC
T ss_pred             H-----HHHhcccccccccccccc------ccchhhhcc---------cccccchhhhcccccccccccccccccccccc
Confidence            1     167777777777755431      011111100         024566666666532 11   1110 114555


Q ss_pred             cEEEEeccEeeeecCCCCccCCCCCCcCCCCCCCCCeEEecCCCCCCCCCccEEEEcCCCCCCCccccCCCCccCCCCCC
Q 048322          349 KFMTISNSSLDMIGCKGMLYDSQAGSSLPKPMTTTNVLEFGKLLEPGFQILETLVIGNSEQLKPWRQGRGLSMGFQRLTS  428 (498)
Q Consensus       349 ~~L~l~~~~l~~~~~~~l~~~~~~l~~lp~~l~~L~~L~i~~~~~~~lp~L~~L~l~~c~~L~~l~~l~~l~~~l~~l~~  428 (498)
                      ++|++++|              ..++.-  .+.          .+..+|+|++|++++|+.++.- .    ...+..+++
T Consensus       178 ~~L~L~~~--------------~~itd~--~~~----------~l~~~~~L~~L~L~~C~~i~~~-~----l~~L~~~~~  226 (284)
T d2astb2         178 VHLDLSDS--------------VMLKND--CFQ----------EFFQLNYLQHLSLSRCYDIIPE-T----LLELGEIPT  226 (284)
T ss_dssp             SEEECTTC--------------TTCCGG--GGG----------GGGGCTTCCEEECTTCTTCCGG-G----GGGGGGCTT
T ss_pred             cccccccc--------------cCCCch--hhh----------hhcccCcCCEEECCCCCCCChH-H----HHHHhcCCC
Confidence            55555432              111100  000          2234677888888888877531 1    234567788


Q ss_pred             cCeEeeecC
Q 048322          429 LQSLKIWNC  437 (498)
Q Consensus       429 L~~L~l~~c  437 (498)
                      |++|++.+|
T Consensus       227 L~~L~l~~~  235 (284)
T d2astb2         227 LKTLQVFGI  235 (284)
T ss_dssp             CCEEECTTS
T ss_pred             CCEEeeeCC
Confidence            999999887

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=3.3e-09  Score=95.41  Aligned_cols=204  Identities=15%  Similarity=0.142  Sum_probs=123.7

Q ss_pred             CCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCC--CCCccccceeeccccccceecCccccCCCCCCCC
Q 048322          174 KCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPS--LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPF  251 (498)
Q Consensus       174 ~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~--i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~  251 (498)
                      +++++|+++++....+|..... .+++|++|++++|.....+|+  +..+++++++.+..++.+..++...+.     .+
T Consensus        29 ~~l~~L~Ls~n~i~~l~~~~f~-~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~-----~l  102 (242)
T d1xwdc1          29 RNAIELRFVLTKLRVIQKGAFS-GFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQ-----NL  102 (242)
T ss_dssp             SCCSEEEEESCCCCEECTTTTT-TCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEE-----CC
T ss_pred             CCCCEEECcCCcCCccChhHhh-ccchhhhhhhccccccceeecccccccccccccccccccccccccccccc-----cc
Confidence            6899999999988888775322 589999999999866665654  677889999998887788888766554     48


Q ss_pred             CCCceeeccCCCccccccccccCCccccCCCccceeeecc--CCCccccCCCCcchHHHHHHhcccccccCCCC-ccccE
Q 048322          252 PSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVK--CPKLSGKLPELLPSLEILVSKCEKLVVSLSSY-PRLCR  328 (498)
Q Consensus       252 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~--c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~~l-~~L~~  328 (498)
                      ++|+.+.+.++ .+......       ..+.+++.+....  +..+. .++..                .+..+ ..+..
T Consensus       103 ~~L~~l~l~~~-~l~~~~~~-------~~~~~l~~l~~~~~~n~~l~-~i~~~----------------~~~~~~~~l~~  157 (242)
T d1xwdc1         103 PNLQYLLISNT-GIKHLPDV-------HKIHSLQKVLLDIQDNINIH-TIERN----------------SFVGLSFESVI  157 (242)
T ss_dssp             TTCCEEEEESC-CCCSCCCC-------TTTCBSSCEEEEEESCTTCC-EECTT----------------SSTTSBSSCEE
T ss_pred             ccccccccchh-hhcccccc-------cccccccccccccccccccc-ccccc----------------cccccccccee
Confidence            99999999876 33332210       1134444444322  22333 33320                23333 46788


Q ss_pred             EEecCCCcceecCC-CCCCCccEEEEeccEeeeecCCCCccCCCCCCcCCCCCCCCCeEEecCCCCCCCCCccEEEEcCC
Q 048322          329 LEVDECKELVCRTP-IDSKLIKFMTISNSSLDMIGCKGMLYDSQAGSSLPKPMTTTNVLEFGKLLEPGFQILETLVIGNS  407 (498)
Q Consensus       329 L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~l~~lp~~l~~L~~L~i~~~~~~~lp~L~~L~l~~c  407 (498)
                      |++.++....++.. ...++++.+...              .+..++.+|..            .+.++++|+.|+++++
T Consensus       158 L~l~~n~l~~i~~~~~~~~~l~~~~~l--------------~~n~l~~l~~~------------~f~~l~~L~~L~Ls~N  211 (242)
T d1xwdc1         158 LWLNKNGIQEIHNCAFNGTQLDELNLS--------------DNNNLEELPND------------VFHGASGPVILDISRT  211 (242)
T ss_dssp             EECCSSCCCEECTTTTTTCCEEEEECT--------------TCTTCCCCCTT------------TTTTSCCCSEEECTTS
T ss_pred             eecccccccccccccccchhhhccccc--------------cccccccccHH------------HhcCCCCCCEEECCCC
Confidence            88888766554432 334555555432              22345555432            1245666777777664


Q ss_pred             CCCCCccccCCCCc-cCCCCCCcCeEeeecCCCCCcCC
Q 048322          408 EQLKPWRQGRGLSM-GFQRLTSLQSLKIWNCPNLTLFP  444 (498)
Q Consensus       408 ~~L~~l~~l~~l~~-~l~~l~~L~~L~l~~c~~l~~lp  444 (498)
                      + ++.+      |. .+.+++.|+.+++.   .++.+|
T Consensus       212 ~-l~~l------~~~~~~~l~~L~~l~~~---~l~~lp  239 (242)
T d1xwdc1         212 R-IHSL------PSYGLENLKKLRARSTY---NLKKLP  239 (242)
T ss_dssp             C-CCCC------CSSSCTTCCEEESSSEE---SSSCSC
T ss_pred             c-CCcc------CHHHHcCCcccccCcCC---CCCcCC
Confidence            3 5433      33 35556666655554   445555

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.02  E-value=8.2e-10  Score=97.19  Aligned_cols=162  Identities=19%  Similarity=0.182  Sum_probs=115.7

Q ss_pred             CCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCCCCCccccceeeccccccceecCccccCCCCCCCCCC
Q 048322          174 KCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPSLGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPS  253 (498)
Q Consensus       174 ~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~  253 (498)
                      .+|++|++.++....++. +.  .+++|++|++++| .++.+++++.+++|++|+++++ .++.++. +      ..+++
T Consensus        46 ~~L~~L~l~~~~i~~l~~-l~--~l~~L~~L~L~~n-~i~~l~~~~~l~~L~~L~l~~n-~i~~l~~-l------~~l~~  113 (210)
T d1h6ta2          46 NSIDQIIANNSDIKSVQG-IQ--YLPNVTKLFLNGN-KLTDIKPLANLKNLGWLFLDEN-KVKDLSS-L------KDLKK  113 (210)
T ss_dssp             HTCCEEECTTSCCCCCTT-GG--GCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSS-CCCCGGG-G------TTCTT
T ss_pred             cCccEEECcCCCCCCchh-Hh--hCCCCCEEeCCCc-cccCccccccCccccccccccc-ccccccc-c------ccccc
Confidence            567888888877766654 44  5899999999996 6788888999999999999986 5777663 2      34899


Q ss_pred             CceeeccCCCccccccccccCCccccCCCccceeeeccCCCccccCCCCcchHHHHHHhcccccccCCCCccccEEEecC
Q 048322          254 LKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSYPRLCRLEVDE  333 (498)
Q Consensus       254 L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~L~l~~  333 (498)
                      |+.|++.++.. ..+.       .+..+++|+.+.+.++ .++ ..+                  .+..+++|+.+++++
T Consensus       114 L~~L~l~~~~~-~~~~-------~l~~l~~l~~l~~~~n-~l~-~~~------------------~~~~l~~L~~l~l~~  165 (210)
T d1h6ta2         114 LKSLSLEHNGI-SDIN-------GLVHLPQLESLYLGNN-KIT-DIT------------------VLSRLTKLDTLSLED  165 (210)
T ss_dssp             CCEEECTTSCC-CCCG-------GGGGCTTCCEEECCSS-CCC-CCG------------------GGGGCTTCSEEECCS
T ss_pred             ccccccccccc-cccc-------cccccccccccccccc-ccc-ccc------------------ccccccccccccccc
Confidence            99999987742 2221       1223788999998876 333 221                  233467888899988


Q ss_pred             CCcceecCCCCCCCccEEEEeccEeeeecCCCCccCCCCCCcCC--CCCCCCCeEEecC
Q 048322          334 CKELVCRTPIDSKLIKFMTISNSSLDMIGCKGMLYDSQAGSSLP--KPMTTTNVLEFGK  390 (498)
Q Consensus       334 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~l~~lp--~~l~~L~~L~i~~  390 (498)
                      |....++....+++|++|++++|.               ++.+|  ..+++|+.|++++
T Consensus       166 n~l~~i~~l~~l~~L~~L~Ls~N~---------------i~~l~~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         166 NQISDIVPLAGLTKLQNLYLSKNH---------------ISDLRALAGLKNLDVLELFS  209 (210)
T ss_dssp             SCCCCCGGGTTCTTCCEEECCSSC---------------CCBCGGGTTCTTCSEEEEEE
T ss_pred             ccccccccccCCCCCCEEECCCCC---------------CCCChhhcCCCCCCEEEccC
Confidence            877666666678889999988763               22332  3457888888864

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=1.8e-12  Score=120.39  Aligned_cols=61  Identities=15%  Similarity=0.149  Sum_probs=26.0

Q ss_pred             CCCCceEEEeecCCC-CCCccccCCCCCCccEEeEeCCCCCCC--CCC-CCCccccceeeccccccc
Q 048322          173 HKCIKKVAIRNYGGA-RFPLWIGDPLFSKIEFLELENCNNCVS--LPS-LGLLSSLKHLAVKGLKKL  235 (498)
Q Consensus       173 ~~~L~~L~l~~~~~~-~~p~~~~~~~l~~L~~L~l~~c~~~~~--lp~-i~~l~~L~~L~l~~~~~l  235 (498)
                      +++|++|.+.++... ..+.++.  .+++|++|++++|..++.  +.. ...+++|++|++++|..+
T Consensus        70 c~~L~~L~L~~~~l~~~~~~~l~--~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~  134 (284)
T d2astb2          70 CSKLQNLSLEGLRLSDPIVNTLA--KNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDF  134 (284)
T ss_dssp             BCCCSEEECTTCBCCHHHHHHHT--TCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTC
T ss_pred             CCCcccccccccCCCcHHHHHHh--cCCCCcCccccccccccccccchhhHHHHhcccccccccccc
Confidence            355555555554321 1122222  345555555555544431  111 223445555555554433

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=3.4e-09  Score=88.76  Aligned_cols=110  Identities=15%  Similarity=0.175  Sum_probs=87.3

Q ss_pred             CCCCCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCCCCCccccceeeccccccceecCccccCCCCCCC
Q 048322          171 QPHKCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPSLGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMP  250 (498)
Q Consensus       171 ~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~  250 (498)
                      .++.++++|++++++...+|....  .+++|++|++++| .+..++.+..+++|++|++++| .+..++..++.     .
T Consensus        15 ~n~~~lr~L~L~~n~I~~i~~~~~--~l~~L~~L~Ls~N-~i~~l~~~~~l~~L~~L~ls~N-~i~~l~~~~~~-----~   85 (162)
T d1a9na_          15 TNAVRDRELDLRGYKIPVIENLGA--TLDQFDAIDFSDN-EIRKLDGFPLLRRLKTLLVNNN-RICRIGEGLDQ-----A   85 (162)
T ss_dssp             ECTTSCEEEECTTSCCCSCCCGGG--GTTCCSEEECCSS-CCCEECCCCCCSSCCEEECCSS-CCCEECSCHHH-----H
T ss_pred             cCcCcCcEEECCCCCCCccCcccc--ccccCCEEECCCC-CCCccCCcccCcchhhhhcccc-cccCCCccccc-----c
Confidence            456789999999999999987554  5899999999996 6888888999999999999996 58888876543     4


Q ss_pred             CCCCceeeccCCCccccccccccCCccccCCCccceeeeccCCC
Q 048322          251 FPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCPK  294 (498)
Q Consensus       251 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~  294 (498)
                      +++|+.|++.++ .++.|..    ...+..+++|++|++++|+-
T Consensus        86 l~~L~~L~L~~N-~i~~~~~----l~~l~~l~~L~~L~l~~N~i  124 (162)
T d1a9na_          86 LPDLTELILTNN-SLVELGD----LDPLASLKSLTYLCILRNPV  124 (162)
T ss_dssp             CTTCCEEECCSC-CCCCGGG----GGGGGGCTTCCEEECCSSGG
T ss_pred             ccccccceeccc-ccccccc----ccccccccccchhhcCCCcc
Confidence            899999999887 4555431    01123389999999999953

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.65  E-value=6.6e-08  Score=76.73  Aligned_cols=100  Identities=18%  Similarity=0.188  Sum_probs=66.2

Q ss_pred             ceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCC-CCCccccceeeccccccceecCccccCCCCCCCCCCCc
Q 048322          177 KKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPS-LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLK  255 (498)
Q Consensus       177 ~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~-i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~  255 (498)
                      |+|+++++....+|. +.  .+++|++|++++| .++.+|+ ++.+++|+.|+++++ .++.++. +      ..+++|+
T Consensus         1 R~L~Ls~n~l~~l~~-l~--~l~~L~~L~ls~N-~l~~lp~~~~~l~~L~~L~l~~N-~i~~l~~-~------~~l~~L~   68 (124)
T d1dcea3           1 RVLHLAHKDLTVLCH-LE--QLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDN-ALENVDG-V------ANLPRLQ   68 (124)
T ss_dssp             SEEECTTSCCSSCCC-GG--GGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSS-CCCCCGG-G------TTCSSCC
T ss_pred             CEEEcCCCCCCCCcc-cc--cCCCCCEEECCCC-ccCcchhhhhhhhcccccccccc-cccccCc-c------ccccccC
Confidence            578888888777765 44  5788888888874 6778876 788888888888874 5666642 2      2477777


Q ss_pred             eeeccCCCccccccccccCCccccCCCccceeeeccCC
Q 048322          256 ILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCP  293 (498)
Q Consensus       256 ~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~  293 (498)
                      +|+++++ .+..+..    ...+..+++|+.|++++++
T Consensus        69 ~L~l~~N-~i~~~~~----~~~l~~~~~L~~L~l~~N~  101 (124)
T d1dcea3          69 ELLLCNN-RLQQSAA----IQPLVSCPRLVLLNLQGNS  101 (124)
T ss_dssp             EEECCSS-CCCSSST----TGGGGGCTTCCEEECTTSG
T ss_pred             eEECCCC-ccCCCCC----chhhcCCCCCCEEECCCCc
Confidence            7777665 3333321    0112236777777777663

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.64  E-value=6.9e-08  Score=83.17  Aligned_cols=105  Identities=15%  Similarity=0.114  Sum_probs=47.9

Q ss_pred             CCCceEEEeecCCCC-CCc-cccCCCCCCccEEeEeCCCCCCCCCC-CCCccccceeeccccccceecCccccCCCCCCC
Q 048322          174 KCIKKVAIRNYGGAR-FPL-WIGDPLFSKIEFLELENCNNCVSLPS-LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMP  250 (498)
Q Consensus       174 ~~L~~L~l~~~~~~~-~p~-~~~~~~l~~L~~L~l~~c~~~~~lp~-i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~  250 (498)
                      +++++|+++++.... .+. ++.  .+++|+.|+|+++......+. +..+++|++|+++++ .+++++...|.     .
T Consensus        29 ~~l~~L~Ls~N~i~~~~~~~~f~--~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N-~l~~l~~~~F~-----~  100 (192)
T d1w8aa_          29 LHTTELLLNDNELGRISSDGLFG--RLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN-KIKEISNKMFL-----G  100 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGG--GCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC-CCCEECSSSST-----T
T ss_pred             CCCCEEEeCCCCCcccccccccC--CCceEeeeeccccccccccccccccccccceeeeccc-cccccCHHHHh-----C
Confidence            455555555555433 222 222  355555555555422222222 455555555555553 45555544333     3


Q ss_pred             CCCCceeeccCCCccccccccccCCccccCCCccceeeeccC
Q 048322          251 FPSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKC  292 (498)
Q Consensus       251 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c  292 (498)
                      +++|++|+++++ .++.+.++....     +++|++|+++++
T Consensus       101 l~~L~~L~L~~N-~l~~i~~~~f~~-----l~~L~~l~L~~N  136 (192)
T d1w8aa_         101 LHQLKTLNLYDN-QISCVMPGSFEH-----LNSLTSLNLASN  136 (192)
T ss_dssp             CTTCCEEECCSS-CCCEECTTSSTT-----CTTCCEEECTTC
T ss_pred             CCcccccccCCc-cccccCHHHhcC-----Cccccccccccc
Confidence            555555555544 333333222211     455555555544

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.61  E-value=5.8e-08  Score=77.04  Aligned_cols=87  Identities=13%  Similarity=0.142  Sum_probs=71.1

Q ss_pred             hcCCCCCCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCCCCCccccceeeccccccceecCccccCCCC
Q 048322          168 DILQPHKCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPSLGLLSSLKHLAVKGLKKLKSIESEVYGEGF  247 (498)
Q Consensus       168 ~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~  247 (498)
                      ..+..+.+|++|+++++....+|..+.  .+++|+.|++++| .++.+|+++.+++|++|+++++ .+..++.-    ..
T Consensus        14 ~~l~~l~~L~~L~ls~N~l~~lp~~~~--~l~~L~~L~l~~N-~i~~l~~~~~l~~L~~L~l~~N-~i~~~~~~----~~   85 (124)
T d1dcea3          14 CHLEQLLLVTHLDLSHNRLRALPPALA--ALRCLEVLQASDN-ALENVDGVANLPRLQELLLCNN-RLQQSAAI----QP   85 (124)
T ss_dssp             CCGGGGTTCCEEECCSSCCCCCCGGGG--GCTTCCEEECCSS-CCCCCGGGTTCSSCCEEECCSS-CCCSSSTT----GG
T ss_pred             cccccCCCCCEEECCCCccCcchhhhh--hhhcccccccccc-cccccCccccccccCeEECCCC-ccCCCCCc----hh
Confidence            345566899999999999999998777  6999999999995 7888999999999999999985 56666531    11


Q ss_pred             CCCCCCCceeeccCC
Q 048322          248 SMPFPSLKILRFENL  262 (498)
Q Consensus       248 ~~~~~~L~~L~l~~~  262 (498)
                      +..+++|+.|++++.
T Consensus        86 l~~~~~L~~L~l~~N  100 (124)
T d1dcea3          86 LVSCPRLVLLNLQGN  100 (124)
T ss_dssp             GGGCTTCCEEECTTS
T ss_pred             hcCCCCCCEEECCCC
Confidence            235899999999876

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.58  E-value=1.1e-07  Score=81.74  Aligned_cols=106  Identities=14%  Similarity=0.056  Sum_probs=69.4

Q ss_pred             CCcccEEEEecCCCCCCcChhhHHHhhhcCCCCCCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCC--C
Q 048322          141 LNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPS--L  218 (498)
Q Consensus       141 ~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~--i  218 (498)
                      .++++|+|+.+.-...     ..   ...+..+++|+.|+++++....++..... .+++|++|+|++| .+..+|+  |
T Consensus        29 ~~l~~L~Ls~N~i~~~-----~~---~~~f~~l~~L~~L~L~~N~i~~~~~~~~~-~~~~L~~L~Ls~N-~l~~l~~~~F   98 (192)
T d1w8aa_          29 LHTTELLLNDNELGRI-----SS---DGLFGRLPHLVKLELKRNQLTGIEPNAFE-GASHIQELQLGEN-KIKEISNKMF   98 (192)
T ss_dssp             TTCSEEECCSCCCCSB-----CC---SCSGGGCTTCCEEECCSSCCCCBCTTTTT-TCTTCCEEECCSC-CCCEECSSSS
T ss_pred             CCCCEEEeCCCCCccc-----cc---ccccCCCceEeeeeccccccccccccccc-cccccceeeeccc-cccccCHHHH
Confidence            5778888877652100     00   11223447788888888777666543322 4778888888875 5667765  7


Q ss_pred             CCccccceeeccccccceecCccccCCCCCCCCCCCceeeccCC
Q 048322          219 GLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFENL  262 (498)
Q Consensus       219 ~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~  262 (498)
                      ..+++|++|+|+++ .++.++.+.+.     .+++|++|++.+.
T Consensus        99 ~~l~~L~~L~L~~N-~l~~i~~~~f~-----~l~~L~~l~L~~N  136 (192)
T d1w8aa_          99 LGLHQLKTLNLYDN-QISCVMPGSFE-----HLNSLTSLNLASN  136 (192)
T ss_dssp             TTCTTCCEEECCSS-CCCEECTTSST-----TCTTCCEEECTTC
T ss_pred             hCCCcccccccCCc-cccccCHHHhc-----CCccccccccccc
Confidence            77888888888874 57777776554     4778888888765

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=4.6e-08  Score=81.69  Aligned_cols=123  Identities=15%  Similarity=0.153  Sum_probs=81.3

Q ss_pred             CCCccEEeEeCCCCCCCCCC-CCCccccceeeccccccceecCccccCCCCCCCCCCCceeeccCCCccccccccccCCc
Q 048322          198 FSKIEFLELENCNNCVSLPS-LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFENLPEWWHWDTDIKGNV  276 (498)
Q Consensus       198 l~~L~~L~l~~c~~~~~lp~-i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~  276 (498)
                      +.+|+.|+|++| .++.+|. +..+++|++|+++++ .+..++. +      ..+++|++|+++++ .++.+.++.... 
T Consensus        17 ~~~lr~L~L~~n-~I~~i~~~~~~l~~L~~L~Ls~N-~i~~l~~-~------~~l~~L~~L~ls~N-~i~~l~~~~~~~-   85 (162)
T d1a9na_          17 AVRDRELDLRGY-KIPVIENLGATLDQFDAIDFSDN-EIRKLDG-F------PLLRRLKTLLVNNN-RICRIGEGLDQA-   85 (162)
T ss_dssp             TTSCEEEECTTS-CCCSCCCGGGGTTCCSEEECCSS-CCCEECC-C------CCCSSCCEEECCSS-CCCEECSCHHHH-
T ss_pred             cCcCcEEECCCC-CCCccCccccccccCCEEECCCC-CCCccCC-c------ccCcchhhhhcccc-cccCCCcccccc-
Confidence            568999999995 6788887 466889999999985 5777742 2      24888889988887 455554322222 


Q ss_pred             cccCCCccceeeeccCCCccccCCCCcchHHHHHHhcccccccCCCCccccEEEecCCCcceecC-----CCCCCCccEE
Q 048322          277 HVDIFPRLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSYPRLCRLEVDECKELVCRT-----PIDSKLIKFM  351 (498)
Q Consensus       277 ~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~-----~~~~~~L~~L  351 (498)
                          +++|++|++++| .+. .+++              + ..+..+++|++|++++|+....+.     ...+|+|+.|
T Consensus        86 ----l~~L~~L~L~~N-~i~-~~~~--------------l-~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~L  144 (162)
T d1a9na_          86 ----LPDLTELILTNN-SLV-ELGD--------------L-DPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVL  144 (162)
T ss_dssp             ----CTTCCEEECCSC-CCC-CGGG--------------G-GGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEE
T ss_pred             ----ccccccceeccc-ccc-cccc--------------c-cccccccccchhhcCCCccccccchHHHHHHHCCCcCee
Confidence                788888888887 333 2221              0 133456788888888886554332     1225666655


Q ss_pred             E
Q 048322          352 T  352 (498)
Q Consensus       352 ~  352 (498)
                      +
T Consensus       145 D  145 (162)
T d1a9na_         145 D  145 (162)
T ss_dssp             T
T ss_pred             C
Confidence            4

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=8.9e-07  Score=73.07  Aligned_cols=105  Identities=17%  Similarity=0.079  Sum_probs=79.3

Q ss_pred             CCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCC--CCCccccceeeccccccceecCccccCCCCCCCC
Q 048322          174 KCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPS--LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPF  251 (498)
Q Consensus       174 ~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~--i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~  251 (498)
                      .....++..+.+....|..+.  .+++|++|++.+++.++.++.  |..+++|+.|+++++ .++.++...|.     .+
T Consensus         8 ~~~~~l~c~~~~~~~~p~~l~--~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N-~l~~i~~~~f~-----~l   79 (156)
T d2ifga3           8 HGSSGLRCTRDGALDSLHHLP--GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFH-----FT   79 (156)
T ss_dssp             SSSSCEECCSSCCCTTTTTSC--SCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGG-----SC
T ss_pred             CCCCeEEecCCCCccCccccc--CccccCeeecCCCccccccCchhhccccccCcceeecc-ccCCccccccc-----cc
Confidence            345667778877778887776  578899999987777888875  888999999999885 68888776554     48


Q ss_pred             CCCceeeccCCCccccccccccCCccccCCCccceeeeccCC
Q 048322          252 PSLKILRFENLPEWWHWDTDIKGNVHVDIFPRLQELSVVKCP  293 (498)
Q Consensus       252 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~  293 (498)
                      ++|++|+++++ .++.+..+...      ..+|++|+|++++
T Consensus        80 ~~L~~L~Ls~N-~l~~l~~~~~~------~~~l~~L~L~~Np  114 (156)
T d2ifga3          80 PRLSRLNLSFN-ALESLSWKTVQ------GLSLQELVLSGNP  114 (156)
T ss_dssp             SCCCEEECCSS-CCSCCCSTTTC------SCCCCEEECCSSC
T ss_pred             ccccceeccCC-CCcccChhhhc------cccccccccCCCc
Confidence            89999999876 55555433322      3478899998874

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.11  E-value=4.9e-08  Score=84.48  Aligned_cols=104  Identities=15%  Similarity=0.254  Sum_probs=58.1

Q ss_pred             CCCCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCCCCC-CCCccccceeeccccccceecCccccCCCCCCC
Q 048322          172 PHKCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVSLPS-LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMP  250 (498)
Q Consensus       172 ~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~lp~-i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~  250 (498)
                      .+++|++|+++++....++. +.  .+++|++|++++| .++.+|. ...+++|+.|++.++ .++.++. +.      .
T Consensus        46 ~L~~L~~L~Ls~n~I~~i~~-l~--~l~~L~~L~Ls~N-~i~~i~~~~~~~~~L~~L~l~~N-~i~~l~~-~~------~  113 (198)
T d1m9la_          46 TLKACKHLALSTNNIEKISS-LS--GMENLRILSLGRN-LIKKIENLDAVADTLEELWISYN-QIASLSG-IE------K  113 (198)
T ss_dssp             HTTTCCEEECSEEEESCCCC-HH--HHTTCCEEECCEE-EECSCSSHHHHHHHCCEEECSEE-ECCCHHH-HH------H
T ss_pred             cccccceeECcccCCCCccc-cc--CCccccChhhccc-ccccccccccccccccccccccc-ccccccc-cc------c
Confidence            34677777777776666653 33  3667777777765 4566665 333456777777664 4554431 11      2


Q ss_pred             CCCCceeeccCCCcccccc-ccccCCccccCCCccceeeeccCC
Q 048322          251 FPSLKILRFENLPEWWHWD-TDIKGNVHVDIFPRLQELSVVKCP  293 (498)
Q Consensus       251 ~~~L~~L~l~~~~~l~~~~-~~~~~~~~~~~l~~L~~L~l~~c~  293 (498)
                      +++|+.|+++++ .++.+. ...     +..+++|+.|++++|+
T Consensus       114 l~~L~~L~L~~N-~i~~~~~~~~-----l~~l~~L~~L~L~~N~  151 (198)
T d1m9la_         114 LVNLRVLYMSNN-KITNWGEIDK-----LAALDKLEDLLLAGNP  151 (198)
T ss_dssp             HHHSSEEEESEE-ECCCHHHHHH-----HTTTTTCSEEEECSSH
T ss_pred             cccccccccccc-hhcccccccc-----ccCCCccceeecCCCc
Confidence            566666666654 233322 011     1226667777766664

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.07  E-value=1.3e-05  Score=65.79  Aligned_cols=107  Identities=16%  Similarity=0.066  Sum_probs=75.8

Q ss_pred             CCccEEeEeCCCCCCCCCC-CCCccccceeeccccccceecCccccCCCCCCCCCCCceeeccCCCccccccccccCCcc
Q 048322          199 SKIEFLELENCNNCVSLPS-LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLKILRFENLPEWWHWDTDIKGNVH  277 (498)
Q Consensus       199 ~~L~~L~l~~c~~~~~lp~-i~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~  277 (498)
                      ...+.++..+ ......|. +..+++|++|++.+++.++.++...+.     .+++|+.|+++++ .++.+.++....  
T Consensus         8 ~~~~~l~c~~-~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~-----~l~~L~~L~Ls~N-~l~~i~~~~f~~--   78 (156)
T d2ifga3           8 HGSSGLRCTR-DGALDSLHHLPGAENLTELYIENQQHLQHLELRDLR-----GLGELRNLTIVKS-GLRFVAPDAFHF--   78 (156)
T ss_dssp             SSSSCEECCS-SCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSC-----SCCCCSEEECCSS-CCCEECTTGGGS--
T ss_pred             CCCCeEEecC-CCCccCcccccCccccCeeecCCCccccccCchhhc-----cccccCcceeecc-ccCCcccccccc--
Confidence            3445666666 34555665 888999999999987789999887554     5999999999887 566665433333  


Q ss_pred             ccCCCccceeeeccCCCccccCCCCcchHHHHHHhcccccccCCCCccccEEEecCCCc
Q 048322          278 VDIFPRLQELSVVKCPKLSGKLPELLPSLEILVSKCEKLVVSLSSYPRLCRLEVDECKE  336 (498)
Q Consensus       278 ~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~Li~~~~~l~~~~~~l~~L~~L~l~~~~~  336 (498)
                         +++|++|+|+++ .++ .+|..                .+ ...+|++|++++|+.
T Consensus        79 ---l~~L~~L~Ls~N-~l~-~l~~~----------------~~-~~~~l~~L~L~~Np~  115 (156)
T d2ifga3          79 ---TPRLSRLNLSFN-ALE-SLSWK----------------TV-QGLSLQELVLSGNPL  115 (156)
T ss_dssp             ---CSCCCEEECCSS-CCS-CCCST----------------TT-CSCCCCEEECCSSCC
T ss_pred             ---cccccceeccCC-CCc-ccChh----------------hh-ccccccccccCCCcc
Confidence               899999999988 565 66641                12 223577777777654

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.03  E-value=1.1e-08  Score=88.70  Aligned_cols=109  Identities=15%  Similarity=0.125  Sum_probs=82.8

Q ss_pred             HhhcccCCcccEEEEecCCCCCCcChhhHHHhhhcCCCCCCCceEEEeecCCCCCCccccCCCCCCccEEeEeCCCCCCC
Q 048322          135 AALCEKLNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPLWIGDPLFSKIEFLELENCNNCVS  214 (498)
Q Consensus       135 ~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~  214 (498)
                      ..+..+++|+.|+|+++.- ..          ++.+..+++|++|++++|....+|....  .+++|+.|++++| .++.
T Consensus        42 ~sl~~L~~L~~L~Ls~n~I-~~----------i~~l~~l~~L~~L~Ls~N~i~~i~~~~~--~~~~L~~L~l~~N-~i~~  107 (198)
T d1m9la_          42 ATLSTLKACKHLALSTNNI-EK----------ISSLSGMENLRILSLGRNLIKKIENLDA--VADTLEELWISYN-QIAS  107 (198)
T ss_dssp             HHHHHTTTCCEEECSEEEE-SC----------CCCHHHHTTCCEEECCEEEECSCSSHHH--HHHHCCEEECSEE-ECCC
T ss_pred             hHHhcccccceeECcccCC-CC----------cccccCCccccChhhccccccccccccc--ccccccccccccc-cccc
Confidence            4577899999999988751 11          1234456899999999999888886554  3568999999986 6777


Q ss_pred             CCCCCCccccceeeccccccceecCc-cccCCCCCCCCCCCceeeccCCC
Q 048322          215 LPSLGLLSSLKHLAVKGLKKLKSIES-EVYGEGFSMPFPSLKILRFENLP  263 (498)
Q Consensus       215 lp~i~~l~~L~~L~l~~~~~l~~i~~-~~~~~~~~~~~~~L~~L~l~~~~  263 (498)
                      ++++..+++|+.|+++++ .++.++. ..+     ..+++|+.|++++++
T Consensus       108 l~~~~~l~~L~~L~L~~N-~i~~~~~~~~l-----~~l~~L~~L~L~~N~  151 (198)
T d1m9la_         108 LSGIEKLVNLRVLYMSNN-KITNWGEIDKL-----AALDKLEDLLLAGNP  151 (198)
T ss_dssp             HHHHHHHHHSSEEEESEE-ECCCHHHHHHH-----TTTTTCSEEEECSSH
T ss_pred             cccccccccccccccccc-hhccccccccc-----cCCCccceeecCCCc
Confidence            777889999999999985 4655542 112     359999999999874

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.72  E-value=1.7e-07  Score=88.63  Aligned_cols=92  Identities=13%  Similarity=0.097  Sum_probs=54.2

Q ss_pred             HhhcccCCcccEEEEecCCCCCCcChhhHHHhhhcCCCCCCCceEEEeecCCCCCCc----ccc---C--CCCCCccEEe
Q 048322          135 AALCEKLNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARFPL----WIG---D--PLFSKIEFLE  205 (498)
Q Consensus       135 ~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~----~~~---~--~~l~~L~~L~  205 (498)
                      ..+.....++.|+|+++.-     .......+.+.+...++|+.|.++++.......    .+.   .  ...++|+.|+
T Consensus        25 ~~L~~~~~l~~L~Ls~n~i-----~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~   99 (344)
T d2ca6a1          25 AVLLEDDSVKEIVLSGNTI-----GTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVR   99 (344)
T ss_dssp             HHHHHCSCCCEEECTTSEE-----CHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEE
T ss_pred             HHHhhCCCCCEEECcCCcC-----CHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccc
Confidence            4466778899999876631     122334556677778899999998765433221    110   0  1356788888


Q ss_pred             EeCCCCCCCC-----CC-CCCccccceeecccc
Q 048322          206 LENCNNCVSL-----PS-LGLLSSLKHLAVKGL  232 (498)
Q Consensus       206 l~~c~~~~~l-----p~-i~~l~~L~~L~l~~~  232 (498)
                      |++|. ++..     .. +...++|++|++++|
T Consensus       100 L~~n~-i~~~~~~~l~~~l~~~~~L~~L~l~~n  131 (344)
T d2ca6a1         100 LSDNA-FGPTAQEPLIDFLSKHTPLEHLYLHNN  131 (344)
T ss_dssp             CCSCC-CCTTTHHHHHHHHHHCTTCCEEECCSS
T ss_pred             ccccc-cccccccchhhhhcccccchheecccc
Confidence            88763 2221     11 234566777777664

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.53  E-value=3.3e-06  Score=82.25  Aligned_cols=90  Identities=19%  Similarity=0.159  Sum_probs=57.6

Q ss_pred             hhcccCCcccEEEEecCCCCCCcChhhHHHhhhcCCCCCCCceEEEeecCCCC-----CCccccCCCCCCccEEeEeCCC
Q 048322          136 ALCEKLNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGAR-----FPLWIGDPLFSKIEFLELENCN  210 (498)
Q Consensus       136 ~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~-----~p~~~~~~~l~~L~~L~l~~c~  210 (498)
                      -+..++++++|+|..+.-     .......+.+.+..+++|++|+++++....     +..++.. ...+|++|++++|.
T Consensus        22 l~~~l~~l~~L~L~~~~i-----~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~-~~~~L~~L~L~~n~   95 (460)
T d1z7xw1          22 LLPLLQQCQVVRLDDCGL-----TEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT-PSCKIQKLSLQNCC   95 (460)
T ss_dssp             HHHHHTTCSEEEEESSCC-----CHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS-TTCCCCEEECTTSC
T ss_pred             HHHhCCCCCEEEeCCCCC-----CHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc-CCCCCCEEECCCCC
Confidence            345678889999987741     122334455566667889999998876431     1112211 23579999998874


Q ss_pred             CCCC-----CCC-CCCccccceeecccc
Q 048322          211 NCVS-----LPS-LGLLSSLKHLAVKGL  232 (498)
Q Consensus       211 ~~~~-----lp~-i~~l~~L~~L~l~~~  232 (498)
                       ++.     ++. +..+++|++|+++++
T Consensus        96 -it~~~~~~l~~~l~~~~~L~~L~L~~N  122 (460)
T d1z7xw1          96 -LTGAGCGVLSSTLRTLPTLQELHLSDN  122 (460)
T ss_dssp             -CBGGGHHHHHHHTTSCTTCCEEECCSS
T ss_pred             -ccccccccccchhhccccccccccccc
Confidence             443     333 677888999998875

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.31  E-value=7.9e-06  Score=76.73  Aligned_cols=77  Identities=12%  Similarity=-0.006  Sum_probs=49.7

Q ss_pred             hHHHhhcccCCcccEEEEecCCCC-CCcChhhHHHhhhcCCCCCCCceEEEeecCCCCC-----CccccCCCCCCccEEe
Q 048322          132 AREAALCEKLNLHALTLEWGSQFD-NSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARF-----PLWIGDPLFSKIEFLE  205 (498)
Q Consensus       132 ~~~~~l~~~~~L~~L~L~~~~~~~-~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~-----p~~~~~~~l~~L~~L~  205 (498)
                      +....+...++|+.|.+..+.... ..........+.+.+...++|+.|+++++.....     ...+.  ..++|++|+
T Consensus        50 ~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~--~~~~L~~L~  127 (344)
T d2ca6a1          50 WLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLS--KHTPLEHLY  127 (344)
T ss_dssp             HHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHH--HCTTCCEEE
T ss_pred             HHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccccccccchhhhhc--ccccchhee
Confidence            344456778899999887553211 1112334455677778889999999998865432     11222  468899999


Q ss_pred             EeCCC
Q 048322          206 LENCN  210 (498)
Q Consensus       206 l~~c~  210 (498)
                      +++|.
T Consensus       128 l~~n~  132 (344)
T d2ca6a1         128 LHNNG  132 (344)
T ss_dssp             CCSSC
T ss_pred             ccccc
Confidence            99873

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.20  E-value=0.0014  Score=62.86  Aligned_cols=104  Identities=15%  Similarity=0.054  Sum_probs=48.7

Q ss_pred             cccEEEecCCCccee--cC-CCCCCCccEEEEeccEeeeecCCCCccCCCCCCcCCCCCCCCCeEEecCCCC--------
Q 048322          325 RLCRLEVDECKELVC--RT-PIDSKLIKFMTISNSSLDMIGCKGMLYDSQAGSSLPKPMTTTNVLEFGKLLE--------  393 (498)
Q Consensus       325 ~L~~L~l~~~~~~~~--~~-~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~l~~lp~~l~~L~~L~i~~~~~--------  393 (498)
                      +|++|+++++.....  .. ...++++++|++++|.+...++..       +.......++|+.|++++|.+        
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~-------l~~~L~~~~~L~~LdLs~N~i~~~~~~~l   75 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKD-------ISSALRVNPALAELNLRSNELGDVGVHCV   75 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHH-------HHHHHHTCTTCCEEECTTCCCHHHHHHHH
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHH-------HHHHHhcCCCCCEEECcCCcCChHHHHHH
Confidence            466666655543221  11 112566666666666333221110       000001225666677666611        


Q ss_pred             ----C-CCCCccEEEEcCCCCCCCccccCCCCccCCCCCCcCeEeeecC
Q 048322          394 ----P-GFQILETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNC  437 (498)
Q Consensus       394 ----~-~lp~L~~L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c  437 (498)
                          . ..++|++|++++|. ++.- .+..++..+..+++|++|++++|
T Consensus        76 ~~~l~~~~~~L~~L~L~~n~-it~~-~~~~l~~~l~~~~~L~~L~L~~N  122 (460)
T d1z7xw1          76 LQGLQTPSCKIQKLSLQNCC-LTGA-GCGVLSSTLRTLPTLQELHLSDN  122 (460)
T ss_dssp             HHTTCSTTCCCCEEECTTSC-CBGG-GHHHHHHHTTSCTTCCEEECCSS
T ss_pred             HHHHhcCCCCCCEEECCCCC-cccc-ccccccchhhccccccccccccc
Confidence                0 11347777777763 4321 11112345566677777777664

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.11  E-value=0.0045  Score=50.26  Aligned_cols=59  Identities=15%  Similarity=0.024  Sum_probs=32.1

Q ss_pred             CCCCceEEEeecCCCCCCcccc-CCCCCCccEEeEeCCCCCCCCCCCC--Cccccceeecccc
Q 048322          173 HKCIKKVAIRNYGGARFPLWIG-DPLFSKIEFLELENCNNCVSLPSLG--LLSSLKHLAVKGL  232 (498)
Q Consensus       173 ~~~L~~L~l~~~~~~~~p~~~~-~~~l~~L~~L~l~~c~~~~~lp~i~--~l~~L~~L~l~~~  232 (498)
                      +++|++|++++|....++.... -..+++|+.|++++| .+..++.+.  ...+|+.|++.++
T Consensus        64 ~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N-~i~~l~~l~~l~~~~L~~L~L~~N  125 (162)
T d1koha1          64 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDKIKGLKLEELWLDGN  125 (162)
T ss_dssp             CTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTS-CCCCGGGHHHHTTCCCSSCCCTTS
T ss_pred             CCCCCEeeCCCccccCCchhHHHHhhCCcccccccccC-ccccchhhhhhhccccceeecCCC
Confidence            4677777777777666543211 013667777777763 455554311  2234555555553

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=91.72  E-value=0.029  Score=45.44  Aligned_cols=75  Identities=12%  Similarity=0.084  Sum_probs=43.7

Q ss_pred             hHHhHHHhhcccCCcccEEEEecCCCCCCcChhhHHHhhhcCCCCCCCceEEEeecCCCC-----CCccccCCCCCCccE
Q 048322          129 RENAREAALCEKLNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGAR-----FPLWIGDPLFSKIEF  203 (498)
Q Consensus       129 ~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~-----~p~~~~~~~l~~L~~  203 (498)
                      ..+..+.-..+.+.|+.|+|++...    -.......+.+.+...++|++|+++++....     +...+.  ..+.|++
T Consensus         3 v~~~l~~l~~n~~~L~~L~L~~~~~----i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~--~n~~L~~   76 (167)
T d1pgva_           3 VESCINRLREDDTDLKEVNINNMKR----VSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIE--TSPSLRV   76 (167)
T ss_dssp             HHHHHHHHHTTCSSCCEEECTTCCS----SCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHH--HCSSCCE
T ss_pred             HHHHHHHHHhCCCCCcEEEeCCCCC----CCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhh--hcccccc
Confidence            3444444445568899998864321    1233344567777777888888888875421     111111  2456777


Q ss_pred             EeEeCC
Q 048322          204 LELENC  209 (498)
Q Consensus       204 L~l~~c  209 (498)
                      |+|++|
T Consensus        77 L~L~~n   82 (167)
T d1pgva_          77 LNVESN   82 (167)
T ss_dssp             EECCSS
T ss_pred             eeeehh
Confidence            777765

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.01  E-value=0.012  Score=47.51  Aligned_cols=63  Identities=19%  Similarity=0.192  Sum_probs=37.5

Q ss_pred             CCCCccEEEEcCCCCCCCccccCCCCccCCCCCCcCeEeeecCCCCCcCCCCCc--cccccceeeccCch
Q 048322          395 GFQILETLVIGNSEQLKPWRQGRGLSMGFQRLTSLQSLKIWNCPNLTLFPEVGL--PSSLLDLYVNNCPR  462 (498)
Q Consensus       395 ~lp~L~~L~l~~c~~L~~l~~l~~l~~~l~~l~~L~~L~l~~c~~l~~lp~~~~--~~sL~~L~i~~c~~  462 (498)
                      .+|.|++|+++++ .++.+..   ++..+..+++|+.|++++ +.+++++....  ..+|+.|++.++|-
T Consensus        63 ~~~~L~~L~Ls~N-~i~~l~~---~~~~~~~l~~L~~L~Ls~-N~i~~l~~l~~l~~~~L~~L~L~~Npl  127 (162)
T d1koha1          63 NIPELLSLNLSNN-RLYRLDD---MSSIVQKAPNLKILNLSG-NELKSERELDKIKGLKLEELWLDGNSL  127 (162)
T ss_dssp             HCTTCCCCCCCSS-CCCCCSG---GGTHHHHSTTCCCCCCTT-SCCCCGGGHHHHTTCCCSSCCCTTSTT
T ss_pred             hCCCCCEeeCCCc-cccCCch---hHHHHhhCCccccccccc-CccccchhhhhhhccccceeecCCCCc
Confidence            3556666666663 3433221   134455678888888887 47777765211  13578888887763

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=85.36  E-value=0.2  Score=40.19  Aligned_cols=37  Identities=16%  Similarity=0.296  Sum_probs=20.6

Q ss_pred             CccccEEEecCCCcceec-------CCCCCCCccEEEEeccEee
Q 048322          323 YPRLCRLEVDECKELVCR-------TPIDSKLIKFMTISNSSLD  359 (498)
Q Consensus       323 l~~L~~L~l~~~~~~~~~-------~~~~~~~L~~L~l~~~~l~  359 (498)
                      .++|++|+++++..+...       .....++|++|++++|.+.
T Consensus        14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~   57 (167)
T d1pgva_          14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAIS   57 (167)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCB
T ss_pred             CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccc
Confidence            467788888765443311       1223456667776665433

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=84.17  E-value=0.015  Score=47.10  Aligned_cols=34  Identities=12%  Similarity=0.200  Sum_probs=20.0

Q ss_pred             CccccEEEecCCCcceec-------CCCCCCCccEEEEecc
Q 048322          323 YPRLCRLEVDECKELVCR-------TPIDSKLIKFMTISNS  356 (498)
Q Consensus       323 l~~L~~L~l~~~~~~~~~-------~~~~~~~L~~L~l~~~  356 (498)
                      .++|++|++.++..++..       .....+.|++|++++|
T Consensus        16 ~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n   56 (166)
T d1io0a_          16 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT   56 (166)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS
T ss_pred             CCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCC
Confidence            467788888775444311       1123566777777665

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=80.54  E-value=0.23  Score=39.58  Aligned_cols=78  Identities=13%  Similarity=0.130  Sum_probs=43.6

Q ss_pred             chHHhHHHhhcccCCcccEEEEecCCCCCCcChhhHHHhhhcCCCCCCCceEEEeecCCCCC-CccccC--CCCCCccEE
Q 048322          128 ERENAREAALCEKLNLHALTLEWGSQFDNSRDVAVEEHVLDILQPHKCIKKVAIRNYGGARF-PLWIGD--PLFSKIEFL  204 (498)
Q Consensus       128 ~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~-p~~~~~--~~l~~L~~L  204 (498)
                      +.+++.+.-..+.+.|++|+|.....    -.......+...+..+++|++|+++++....- -..+..  ...+.++.+
T Consensus         4 ~i~~~l~~~~~~~~~L~~L~L~~~~~----i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l   79 (166)
T d1io0a_           4 DVEETLKRIQNNDPDLEEVNLNNIMN----IPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSL   79 (166)
T ss_dssp             CHHHHHHHHHTTCTTCCEEECTTCTT----CCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEE
T ss_pred             cHHHHHHHHHhcCCCCcEEEcCCCCC----CCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhh
Confidence            44555555556678888888864321    12333445666677778888888887753321 000110  024566677


Q ss_pred             eEeCC
Q 048322          205 ELENC  209 (498)
Q Consensus       205 ~l~~c  209 (498)
                      ++++|
T Consensus        80 ~l~~~   84 (166)
T d1io0a_          80 NVESN   84 (166)
T ss_dssp             ECCSS
T ss_pred             hhccc
Confidence            66654