Citrus Sinensis ID: 048333

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410---
Protein Sequence
SRISGDFYAWKFDCRPTMASWKPEEGSVDCYSWDVVHCNKNTGHVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENLFEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLTKFPNFLENQNHLVILNLSDNRI
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccEEEEEEcccccccEEEEEccccccEEEEcccccccccccccEEEccccccccccccHHccccccccccccccccHHcccccccEEEcccccccccccHHccccccccEEEEEccccccccccccccEEEcccccccccccccEEEccccccccccccccccccccccccccccccEEEccccccEEcccccccccccccEEEcccccccEEccccccccccccEEEccccEEEEEccccHHccccccEEcccccEEEEEccccccccccccEEEccccEEEEcccHHHHccccccEEEccccccEEEccccccccccccccEEEccccccEEEccccccccccccccccccEEccccccccccHHHHccccccEEEcccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHcccccccccccccccccccccccEEEEEcccccEEEEEEEccccccccccccHHHcccccccEEEccccccccccccHHHccccHcHHEcccccHHHcccccccEEEcccccccccccHHHcccccccEEEccccccccccccccccccccccHHHccccccEEEEEcccccccccccccccccccHHHccccccEEEEcccccccccccHHHcccccccEEEEccccccccccHHHccccccEEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEccccccccccccccHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccccccHHHccccccEEEEcccccc
Coil and Loop (DISEMBL)
srisgdfyawkfdcrptmaswkpeegsvdcyswDVVHCNKNTGHVIKLNLshgclfgsinssssLFKLVHLKWLNLAlndfnsseippeiinlsrlelqkpSFENLFEKLSNlktlnlgdvsidstiphniknlssltfVSLRNCELQAMCSFFLIQisgripsslgnlSKLLHLDLSLNELQGeaasfrcfgelpismgnlgslkeldlsqngffgelpTSIRNLFSLEKLDLSFnklsgefpwstgnfsslkllnlrscgfwskvphsignfTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDislnrssvltkatfdattdttsqkiqyrglrscnltkfpnflenqNHLVILNLSDNRI
Flexible Loop (DISEMBL)
srisgdfyawkfdcrptmaswkpeEGSVDCYSWDVVHCNKNTGHVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENLFEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALdislnrssvltkatfdattdttsqkiqyrgLRSCNLTKfpnflenqnhlvilnlsdnri
Low Complexity Region (SEG)
SRISGDFYAWKFDCRPTMASWKPEEGSVDCYSWDVVHCNKNTGHVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENLFEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPsslgnlskllhldlslnelQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLtkatfdattdttSQKIQYRGLRSCNLTKFPNFLENQNHLVILNLSDNRI
Disordered region (IsUnstruct)
****GDFYAWKFDCRPTMASWKPEEGSVDCYSWDVVHCNKNTGHVIKLNLSHGCLFG********FKLVHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENLFEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLTKFPNFLENQNHLVILNL*****
Disordered Region (DISOPRED)
***SGDFYAWKFDCRPTMASWKPEEGSVDCYSWDVVHCNKNTGHVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENLFEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLTKFPNFLENQNHLVILNLSDNRI
Disordered Region (DISEMBL)
SRISGDFYAWKFDCRPTMASWKPEEGSVDCYSWDVVHCNKNTGHVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENLFEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLTKFPNFLENQNHLVILNLSDNRI
Disordered Region (DISPRO)
*RISGDFYAWKFDCRPTMASWKPEEGSVDCYSWDVVHCNKNTGHVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENLFEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLTKFPNFLENQNHLVILNLS****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
SRISGDFYAWKFDCRPTMASWKPEEGSVDCYSWDVVHCNKNTGHVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENLFEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLTKFPNFLENQNHLVILNLSDNRI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	413	2.2.26 [Sep-21-2011]
Q9C9H7	847	Receptor-like protein 12	no	no	0.777	0.378	0.334	2e-32
Q9FII5	1041	Leucine-rich repeat recep	no	no	0.765	0.303	0.332	3e-28
Q9FL28	1173	LRR receptor-like serine/	no	no	0.765	0.269	0.318	1e-27
Q9FRS6	1029	Leucine-rich repeat recep	no	no	0.784	0.314	0.304	7e-27
Q9LVP0	1102	Probable leucine-rich rep	no	no	0.842	0.315	0.303	2e-25
C0LGS2	1136	Probable LRR receptor-lik	no	no	0.631	0.229	0.296	5e-25
Q9M0G7	1013	Leucine-rich repeat recep	no	no	0.762	0.310	0.332	1e-24
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.830	0.274	0.296	3e-24
Q9FL51	872	Probably inactive leucine	no	no	0.772	0.365	0.320	9e-24
Q9LYN8	1192	Leucine-rich repeat recep	no	no	0.702	0.243	0.317	1e-23

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score =  140 bits (352), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 120/359 (33%), Positives = 176/359 (49%), Gaps = 38/359 (10%)

Query: 16  PTMASWK-------PEEGSVDCYSWDVVHCNKNTGHVIKLNLSHGCLFGSINSSSSLFKL 68
           P  ASW        P   S DC  W+ V CN  +G VI L++ +  L   + ++SSLFKL
Sbjct: 50  PINASWHIMNQWRGPWNKSTDCCLWNGVTCNDKSGQVISLDIPNTFLNNYLKTNSSLFKL 109

Query: 69  VHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENLFEK-------LSNLKTLNLGDV 121
            +L+ L+L   +    EIP  + NLS L L    F     +       L+ L+ L L + 
Sbjct: 110 QYLRHLDLTNCNL-YGEIPSSLGNLSHLTLVNLYFNKFVGEIPASIGNLNQLRHLILANN 168

Query: 122 SIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNE 181
            +   IP ++ NLS L      N EL      F  ++ G+IP S+G+L +L +L L+ N 
Sbjct: 169 VLTGEIPSSLGNLSRLV-----NLEL------FSNRLVGKIPDSIGDLKQLRNLSLASNN 217

Query: 182 LQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSG 241
           L          GE+P S+GNL +L  L L+ N   GE+P SI NL  L  +    N LSG
Sbjct: 218 L---------IGEIPSSLGNLSNLVHLVLTHNQLVGEVPASIGNLIELRVMSFENNSLSG 268

Query: 242 EFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSL 301
             P S  N + L +  L S  F S  P  +  F  L++  + +N+FSG    S+  + SL
Sbjct: 269 NIPISFANLTKLSIFVLSSNNFTSTFPFDMSIFHNLEYFDVSYNSFSGPFPKSLLLIPSL 328

Query: 302 EVIYIAKCNFSGQIT-SSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLN 359
           E IY+ +  F+G I  ++  + T+L  L + +N   G +   +  +   NLE LDIS N
Sbjct: 329 ESIYLQENQFTGPIEFANTSSSTKLQDLILGRNRLHGPIPESI--SRLLNLEELDISHN 385

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FII5|TDR_ARATH Leucine-rich repeat receptor-like protein kinase TDR OS=Arabidopsis thaliana GN=TDR PE=1 SV=1

 Score =  126 bits (317), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 126/379 (33%), Positives = 172/379 (45%), Gaps = 63/379 (16%)

Query: 21  WK-PEEGSVDCY--SWDVVHCNKNTGHVIKLNLSHGCLFGSI-----------------N 60
           WK P  G  D    SW  V C+  T  VI L+LSH  L G I                 N
Sbjct: 56  WKVPVNGQNDAVWCSWSGVVCDNVTAQVISLDLSHRNLSGRIPIQIRYLSSLLYLNLSGN 115

Query: 61  S-----SSSLFKLVHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENLFE------- 108
           S      +S+F L  L  L+++ N F+SS  PP I  L  L++   +F N FE       
Sbjct: 116 SLEGSFPTSIFDLTKLTTLDISRNSFDSS-FPPGISKLKFLKVFN-AFSNNFEGLLPSDV 173

Query: 109 -KLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLG 167
            +L  L+ LN G    +  IP     L  L F+ L    L            G++P  LG
Sbjct: 174 SRLRFLEELNFGGSYFEGEIPAAYGGLQRLKFIHLAGNVL-----------GGKLPPRLG 222

Query: 168 NLSKLLHLDLSLNELQGEAAS-------FRCF--------GELPISMGNLGSLKELDLSQ 212
            L++L H+++  N   G   S        + F        G LP  +GNL +L+ L L Q
Sbjct: 223 LLTELQHMEIGYNHFNGNIPSEFALLSNLKYFDVSNCSLSGSLPQELGNLSNLETLFLFQ 282

Query: 213 NGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIG 272
           NGF GE+P S  NL SL+ LD S N+LSG  P       +L  L+L S     +VP  IG
Sbjct: 283 NGFTGEIPESYSNLKSLKLLDFSSNQLSGSIPSGFSTLKNLTWLSLISNNLSGEVPEGIG 342

Query: 273 NFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQ 332
               L  LFL  NNF+G L   +G+   LE + ++  +F+G I SSL +  +L  L +  
Sbjct: 343 ELPELTTLFLWNNNFTGVLPHKLGSNGKLETMDVSNNSFTGTIPSSLCHGNKLYKLILFS 402

Query: 333 NSYGGTVELDVLLTSWKNL 351
           N + G  EL   LT  ++L
Sbjct: 403 NMFEG--ELPKSLTRCESL 419

Acts with CLE41p and CLE44p peptides as a ligand-receptor pair in a signal transduction pathway involved in the regulation of procambium maintenance and polarity during vascular-tissue development. Mediates repression of tracheary element differentiation and the promotion of procambial cells formation and polar division adjacent to phloem cells in the veins.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  124 bits (311), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 112/352 (31%), Positives = 174/352 (49%), Gaps = 36/352 (10%)

Query: 26  GSVDCYSWDVVHCNKNTGHVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSE 85
           GS+   +W  + C+ +TGHV+ ++L    L G +  S ++  L +L+ L+L  N F + +
Sbjct: 56  GSLRHCNWTGITCD-STGHVVSVSLLEKQLEGVL--SPAIANLTYLQVLDLTSNSF-TGK 111

Query: 86  IPPEIINLSRLELQKPSFENLFE--------KLSNLKTLNLGDVSIDSTIPHNIKNLSSL 137
           IP EI  L+ L  Q   + N F         +L N+  L+L +  +   +P  I   SSL
Sbjct: 112 IPAEIGKLTELN-QLILYLNYFSGSIPSGIWELKNIFYLDLRNNLLSGDVPEEICKTSSL 170

Query: 138 TFVSLRNCELQAM---CSFFLIQI----------SGRIPSSLGNLSKLLHLDLSLNELQG 184
             +      L      C   L+ +          +G IP S+G L+ L  LDLS N+L G
Sbjct: 171 VLIGFDYNNLTGKIPECLGDLVHLQMFVAAGNHLTGSIPVSIGTLANLTDLDLSGNQLTG 230

Query: 185 EAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFP 244
           +         +P   GNL +L+ L L++N   G++P  I N  SL +L+L  N+L+G+ P
Sbjct: 231 K---------IPRDFGNLLNLQSLVLTENLLEGDIPAEIGNCSSLVQLELYDNQLTGKIP 281

Query: 245 WSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVI 304
              GN   L+ L +      S +P S+   T+L  L L  N+  G +   IG L SLEV+
Sbjct: 282 AELGNLVQLQALRIYKNKLTSSIPSSLFRLTQLTHLGLSENHLVGPISEEIGFLESLEVL 341

Query: 305 YIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDV-LLTSWKNLEALD 355
            +   NF+G+   S+ NL  L VL +  N+  G +  D+ LLT+ +NL A D
Sbjct: 342 TLHSNNFTGEFPQSITNLRNLTVLTVGFNNISGELPADLGLLTNLRNLSAHD 393

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FRS6|PXL1_ARATH Leucine-rich repeat receptor-like protein kinase PXL1 OS=Arabidopsis thaliana GN=PXL1 PE=2 SV=1

 Score =  122 bits (305), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 111/364 (30%), Positives = 170/364 (46%), Gaps = 40/364 (10%)

Query: 12  FDCRPTMASWK-PEEGS-----VDCYSWDVVHCNKNTGHVIKLNLSHGCLFGSINSSSSL 65
           FD    +  WK PE  +     V C+ W  VHC+ N G+V KL LS+  L G  N S  +
Sbjct: 42  FDPSNNLQDWKRPENATTFSELVHCH-WTGVHCDAN-GYVAKLLLSNMNLSG--NVSDQI 97

Query: 66  FKLVHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENLFEKL-------SNLKTLNL 118
                L+ L+L+ N F SS +P  + NL+ L++   S  + F          + L  +N 
Sbjct: 98  QSFPSLQALDLSNNAFESS-LPKSLSNLTSLKVIDVSVNSFFGTFPYGLGMATGLTHVNA 156

Query: 119 GDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLS 178
              +    +P ++ N ++L  +  R    +           G +PSS  NL  L  L LS
Sbjct: 157 SSNNFSGFLPEDLGNATTLEVLDFRGGYFE-----------GSVPSSFKNLKNLKFLGLS 205

Query: 179 LNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNK 238
            N   G+         +P  +G L SL+ + L  NGF GE+P     L  L+ LDL+   
Sbjct: 206 GNNFGGK---------VPKVIGELSSLETIILGYNGFMGEIPEEFGKLTRLQYLDLAVGN 256

Query: 239 LSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNL 298
           L+G+ P S G    L  + L       K+P  +G  T L FL L  N  +G++   +G L
Sbjct: 257 LTGQIPSSLGQLKQLTTVYLYQNRLTGKLPRELGGMTSLVFLDLSDNQITGEIPMEVGEL 316

Query: 299 RSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISL 358
           ++L+++ + +   +G I S +  L  L VL++ QNS  G+  L V L     L+ LD+S 
Sbjct: 317 KNLQLLNLMRNQLTGIIPSKIAELPNLEVLELWQNSLMGS--LPVHLGKNSPLKWLDVSS 374

Query: 359 NRSS 362
           N+ S
Sbjct: 375 NKLS 378

Involved in the regulation of procambium maintenance and polarity during vascular-tissue development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LVP0|Y5639_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana GN=At5g63930 PE=1 SV=1

 Score =  117 bits (293), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 131/432 (30%), Positives = 187/432 (43%), Gaps = 84/432 (19%)

Query: 13  DCRPTMASWKPEEGSVDCYSWDVVHCNKNTG--HVIKLNLSHGCLFGSINSSSSLFKLVH 70
           D +  + +W   + SV C  W  V C+  +    V+ LNLS   L G +  S S+  LVH
Sbjct: 43  DAKQNLRNWNSND-SVPC-GWTGVMCSNYSSDPEVLSLNLSSMVLSGKL--SPSIGGLVH 98

Query: 71  LKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENLFEKLSNLKTLNLGDVSIDSTIPHN 130
           LK L+L+ N   S +IP EI N S LE+                 L L +   D  IP  
Sbjct: 99  LKQLDLSYNGL-SGKIPKEIGNCSSLEI-----------------LKLNNNQFDGEIPVE 140

Query: 131 IKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFR 190
           I  L SL  + + N            +ISG +P  +GNL       LSL++L     S  
Sbjct: 141 IGKLVSLENLIIYNN-----------RISGSLPVEIGNL-------LSLSQLV--TYSNN 180

Query: 191 CFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNF 250
             G+LP S+GNL  L      QN   G LP+ I    SL  L L+ N+LSGE P   G  
Sbjct: 181 ISGQLPRSIGNLKRLTSFRAGQNMISGSLPSEIGGCESLVMLGLAQNQLSGELPKEIGML 240

Query: 251 SSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCN 310
             L  + L    F   +P  I N T L+ L L  N   G +   +G+L+SLE +Y+ +  
Sbjct: 241 KKLSQVILWENEFSGFIPREISNCTSLETLALYKNQLVGPIPKELGDLQSLEFLYLYRNG 300

Query: 311 FSGQITSSLRNLTQLVVLDMAQNSYGGTVELD----------------------VLLTSW 348
            +G I   + NL+  + +D ++N+  G + L+                      V L++ 
Sbjct: 301 LNGTIPREIGNLSYAIEIDFSENALTGEIPLELGNIEGLELLYLFENQLTGTIPVELSTL 360

Query: 349 KNLEALDISLNRSSVLTKATFDATTDTTSQKIQY-RGLRSCNLTK------FPNFLENQN 401
           KNL  LD+S+N           A T       QY RGL    L +       P  L   +
Sbjct: 361 KNLSKLDLSIN-----------ALTGPIPLGFQYLRGLFMLQLFQNSLSGTIPPKLGWYS 409

Query: 402 HLVILNLSDNRI 413
            L +L++SDN +
Sbjct: 410 DLWVLDMSDNHL 421

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGS2|Y4361_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g36180 OS=Arabidopsis thaliana GN=At4g36180 PE=1 SV=1

 Score =  115 bits (289), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 98/331 (29%), Positives = 147/331 (44%), Gaps = 70/331 (21%)

Query: 65  LFKLVHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENLFEKLSNLKTLNLGDVSID 124
           L  ++ LK L+++ N F S EIPP+I NL RLE                  L L + S+ 
Sbjct: 328 LTNILSLKNLDVSGNLF-SGEIPPDIGNLKRLE-----------------ELKLANNSLT 369

Query: 125 STIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQI-------------SGRIPSSLGNLSK 171
             IP  IK   SL  +      L+     FL  +             SG +PSS+ NL +
Sbjct: 370 GEIPVEIKQCGSLDVLDFEGNSLKGQIPEFLGYMKALKVLSLGRNSFSGYVPSSMVNLQQ 429

Query: 172 LLHLDLSLNELQG---------------EAASFRCFGELPISMGNLGSLKELDLSQNGFF 216
           L  L+L  N L G               + +  R  G +P+S+ NL +L  L+LS NGF 
Sbjct: 430 LERLNLGENNLNGSFPVELMALTSLSELDLSGNRFSGAVPVSISNLSNLSFLNLSGNGFS 489

Query: 217 GELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTR 276
           GE+P S+ NLF L  LDLS   +SGE P       +++++ L+   F   VP    +   
Sbjct: 490 GEIPASVGNLFKLTALDLSKQNMSGEVPVELSGLPNVQVIALQGNNFSGVVPEGFSSLVS 549

Query: 277 LQFLFLGFNNFSGDLLGS------------------------IGNLRSLEVIYIAKCNFS 312
           L+++ L  N+FSG++  +                        IGN  +LEV+ +      
Sbjct: 550 LRYVNLSSNSFSGEIPQTFGFLRLLVSLSLSDNHISGSIPPEIGNCSALEVLELRSNRLM 609

Query: 313 GQITSSLRNLTQLVVLDMAQNSYGGTVELDV 343
           G I + L  L +L VLD+ QN+  G +  ++
Sbjct: 610 GHIPADLSRLPRLKVLDLGQNNLSGEIPPEI 640

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9M0G7|PXL2_ARATH Leucine-rich repeat receptor-like protein kinase PXL2 OS=Arabidopsis thaliana GN=PXL2 PE=2 SV=1

 Score =  114 bits (286), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 115/346 (33%), Positives = 167/346 (48%), Gaps = 31/346 (8%)

Query: 18  MASWKPEEGSVDCYSWDVVHCNKNTGHVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLA 77
           +  WK  + S  C +W  V CN N G+V KL+L+   L G I  S S+ +L  L   N++
Sbjct: 48  LKDWKLSDTSDHC-NWTGVRCNSN-GNVEKLDLAGMNLTGKI--SDSISQLSSLVSFNIS 103

Query: 78  LNDFNSSEIPPEIINLSRLELQKPSFENLFEKLSN----LKTLNLGDVSIDSTIPHNIKN 133
            N F  S +P  I  L  +++ + SF       SN    L  LN    ++   +  ++ N
Sbjct: 104 CNGF-ESLLPKSIPPLKSIDISQNSFSGSLFLFSNESLGLVHLNASGNNLSGNLTEDLGN 162

Query: 134 LSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFG 193
           L SL  + LR        +FF     G +PSS  NL KL  L LS N L GE        
Sbjct: 163 LVSLEVLDLRG-------NFF----QGSLPSSFKNLQKLRFLGLSGNNLTGE-------- 203

Query: 194 ELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSL 253
            LP  +G L SL+   L  N F G +P    N+ SL+ LDL+  KLSGE P   G   SL
Sbjct: 204 -LPSVLGQLPSLETAILGYNEFKGPIPPEFGNINSLKYLDLAIGKLSGEIPSELGKLKSL 262

Query: 254 KLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSG 313
           + L L    F   +P  IG+ T L+ L    N  +G++   I  L++L+++ + +   SG
Sbjct: 263 ETLLLYENNFTGTIPREIGSITTLKVLDFSDNALTGEIPMEITKLKNLQLLNLMRNKLSG 322

Query: 314 QITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLN 359
            I  ++ +L QL VL++  N+  G +  D  L     L+ LD+S N
Sbjct: 323 SIPPAISSLAQLQVLELWNNTLSGELPSD--LGKNSPLQWLDVSSN 366

Involved in the regulation of procambium maintenance and polarity during vascular-tissue development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  113 bits (283), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 115/388 (29%), Positives = 176/388 (45%), Gaps = 45/388 (11%)

Query: 63  SSLFKLVHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENLFE--------KLSNLK 114
           S L +LV ++ L L  +++    IP E+ N S L +   + EN+          +L NL+
Sbjct: 185 SQLGRLVRVQSLILQ-DNYLEGPIPAELGNCSDLTVFTAA-ENMLNGTIPAELGRLENLE 242

Query: 115 TLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQI-------------SGR 161
            LNL + S+   IP  +  +S L ++SL   +LQ +    L  +             +G 
Sbjct: 243 ILNLANNSLTGEIPSQLGEMSQLQYLSLMANQLQGLIPKSLADLGNLQTLDLSANNLTGE 302

Query: 162 IPSSLGNLSKLLHLDLSLNELQGEAASFRCF----------------GELPISMGNLGSL 205
           IP    N+S+LL L L+ N L G      C                 GE+P+ +    SL
Sbjct: 303 IPEEFWNMSQLLDLVLANNHLSGSLPKSICSNNTNLEQLVLSGTQLSGEIPVELSKCQSL 362

Query: 206 KELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWS 265
           K+LDLS N   G +P ++  L  L  L L  N L G    S  N ++L+ L L       
Sbjct: 363 KQLDLSNNSLAGSIPEALFELVELTDLYLHNNTLEGTLSPSISNLTNLQWLVLYHNNLEG 422

Query: 266 KVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQL 325
           K+P  I    +L+ LFL  N FSG++   IGN  SL++I +   +F G+I  S+  L +L
Sbjct: 423 KLPKEISALRKLEVLFLYENRFSGEIPQEIGNCTSLKMIDMFGNHFEGEIPPSIGRLKEL 482

Query: 326 VVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGL 385
            +L + QN   G   L   L +   L  LD++ N+ S    ++F        Q + Y   
Sbjct: 483 NLLHLRQNELVGG--LPASLGNCHQLNILDLADNQLSGSIPSSF-GFLKGLEQLMLYNNS 539

Query: 386 RSCNLTKFPNFLENQNHLVILNLSDNRI 413
              NL   P+ L +  +L  +NLS NR+
Sbjct: 540 LQGNL---PDSLISLRNLTRINLSHNRL 564

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FL51|Y5694_ARATH Probably inactive leucine-rich repeat receptor-like protein kinase At5g06940 OS=Arabidopsis thaliana GN=At5g06940 PE=3 SV=1

 Score =  111 bits (278), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 117/365 (32%), Positives = 166/365 (45%), Gaps = 46/365 (12%)

Query: 7   FYAWKFDCRPTMASWKPEEGSVDCYSWDVVHCNKN-TGHVIKLNLSHGCLFGSINSSSSL 65
           F A   D + +++ W     S  C +W  + C +  T +V  +NL    L G I  S S+
Sbjct: 39  FKASFDDPKGSLSGWFNTSSSHHC-NWTGITCTRAPTLYVSSINLQSLNLSGEI--SDSI 95

Query: 66  FKLVHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENLFEKLSNLKTLNLGDVSIDS 125
             L +L  L+L+LN FN     P  + LSR                 L+TLNL    I  
Sbjct: 96  CDLPYLTHLDLSLNFFNQ----PIPLQLSRC--------------VTLETLNLSSNLIWG 137

Query: 126 TIPHNIKNLSSLTFVSLRNCELQAMCS-----FFLIQI--------SGRIPSSLGNLSKL 172
           TIP  I   SSL  +   +  ++ M        F +Q+        +G +P ++G LS+L
Sbjct: 138 TIPDQISEFSSLKVIDFSSNHVEGMIPEDLGLLFNLQVLNLGSNLLTGIVPPAIGKLSEL 197

Query: 173 LHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKL 232
           + LDLS N             E+P  +G L  L++L L ++GF GE+PTS   L SL  L
Sbjct: 198 VVLDLSENSY--------LVSEIPSFLGKLDKLEQLLLHRSGFHGEIPTSFVGLTSLRTL 249

Query: 233 DLSFNKLSGEFPWSTG-NFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDL 291
           DLS N LSGE P S G +  +L  L++         P  I +  RL  L L  N F G L
Sbjct: 250 DLSLNNLSGEIPRSLGPSLKNLVSLDVSQNKLSGSFPSGICSGKRLINLSLHSNFFEGSL 309

Query: 292 LGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNL 351
             SIG   SLE + +    FSG+    L  L ++ ++    N + G V   V L S   L
Sbjct: 310 PNSIGECLSLERLQVQNNGFSGEFPVVLWKLPRIKIIRADNNRFTGQVPESVSLASA--L 367

Query: 352 EALDI 356
           E ++I
Sbjct: 368 EQVEI 372

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LYN8|EXS_ARATH Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1

 Score =  111 bits (278), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 108/340 (31%), Positives = 156/340 (45%), Gaps = 50/340 (14%)

Query: 52  HGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPPEI---INLSRLELQKPSFENLFE 108
            G L   I +++SL +LV      L+ N   + EIP EI    +LS L L    F+    
Sbjct: 461 EGYLPAEIGNAASLKRLV------LSDNQL-TGEIPREIGKLTSLSVLNLNANMFQGKIP 513

Query: 109 ----KLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLR----NCELQAMCSFFLIQI-- 158
                 ++L TL+LG  ++   IP  I  L+ L  + L     +  + +  S +  QI  
Sbjct: 514 VELGDCTSLTTLDLGSNNLQGQIPDKITALAQLQCLVLSYNNLSGSIPSKPSAYFHQIEM 573

Query: 159 -------------------SGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISM 199
                              SG IP  LG    L+ + LS N L GE         +P S+
Sbjct: 574 PDLSFLQHHGIFDLSYNRLSGPIPEELGECLVLVEISLSNNHLSGE---------IPASL 624

Query: 200 GNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLR 259
             L +L  LDLS N   G +P  + N   L+ L+L+ N+L+G  P S G   SL  LNL 
Sbjct: 625 SRLTNLTILDLSGNALTGSIPKEMGNSLKLQGLNLANNQLNGHIPESFGLLGSLVKLNLT 684

Query: 260 SCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSL 319
                  VP S+GN   L  + L FNN SG+L   +  +  L  +YI +  F+G+I S L
Sbjct: 685 KNKLDGPVPASLGNLKELTHMDLSFNNLSGELSSELSTMEKLVGLYIEQNKFTGEIPSEL 744

Query: 320 RNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLN 359
            NLTQL  LD+++N   G  E+   +    NLE L+++ N
Sbjct: 745 GNLTQLEYLDVSENLLSG--EIPTKICGLPNLEFLNLAKN 782

Receptor with a serine/threonine-protein kinase activity required for the specification of the correct number of male archesporial initials and for the subsequent specification of tapetal and middle cell layer identities. In seeds, required for enhancing cell size and the rate of embryonic development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	413
147766212	925	hypothetical protein VITISV_018438 [Viti	0.939	0.419	0.403	2e-58
359485822	993	PREDICTED: receptor-like protein 12-like	0.939	0.390	0.372	3e-58
147804670	1004	hypothetical protein VITISV_022039 [Viti	0.961	0.395	0.371	7e-56
224140505	993	predicted protein [Populus trichocarpa]	0.922	0.383	0.351	7e-55
359485824	973	PREDICTED: receptor-like protein 12-like	0.900	0.382	0.370	2e-53
255548694	984	serine/threonine-protein kinase bri1, pu	0.939	0.394	0.348	5e-53
147782974	1719	hypothetical protein VITISV_036826 [Viti	0.910	0.218	0.346	2e-51
359490156	886	PREDICTED: receptor-like protein 12-like	0.818	0.381	0.375	3e-51
224140509	961	predicted protein [Populus trichocarpa]	0.920	0.395	0.344	6e-51
255548700	932	serine-threonine protein kinase, plant-t	0.953	0.422	0.359	2e-50

>gi|147766212|emb|CAN63381.1| hypothetical protein VITISV_018438 [Vitis vinifera]

 Score =  233 bits (593), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 179/444 (40%), Positives = 238/444 (53%), Gaps = 56/444 (12%)

Query: 4   SGDFYAWKFDCRPTMASWKPE---EGSVDCYSWDVVHCNKNTGHVIKLNLSHGCLFGSIN 60
           SGD  A+     P +A WK     EGS DC SWD V C++ TGHVI L+L+  CL+GSIN
Sbjct: 58  SGDPSAY-----PKVAMWKSHGEGEGS-DCCSWDGVECDRETGHVIGLHLASSCLYGSIN 111

Query: 61  SSSSLFKLVHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENLFEKLSNLKTLNLGD 120
           SS++LF LVHL+ L+L+ N FN SEIP          LQKP   NL +  ++LK L+L +
Sbjct: 112 SSNTLFSLVHLRRLDLSXNXFNYSEIP--------FXLQKPXLRNLVQNXAHLKKLHLSE 163

Query: 121 VSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQI-SGRI------PSSLGNLSKLL 173
           V+I STIPH + NLSSLT + LR C L       + Q+ S +I      P  +G L +  
Sbjct: 164 VNISSTIPHELANLSSLTTLFLRECGLHGEFPMNIFQLPSLKILSVSYNPDLIGYLPEFQ 223

Query: 174 HLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLD 233
                L EL     SF   GELP S+G LGSL ELD+S   F G +P+++ +L  L  LD
Sbjct: 224 ETS-PLKELHLYGTSFS--GELPTSIGRLGSLTELDISSCNFTGLVPSTLGHLPQLSSLD 280

Query: 234 LSFNKLSGEFPWSTGNFSSLKLL------------------------NLRSCGFWSKVPH 269
           LS N  SG  P S  N + L  L                        +LR      ++P 
Sbjct: 281 LSNNSFSGLIPSSMANLTQLTFLVLSFNNFSIGTLAWLGEQTKLTALHLRQINLIGEIPF 340

Query: 270 SIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLD 329
           S+ N ++L  L L  N  SG +   + NL  L V+ +   N  G I SSL  L  L  L 
Sbjct: 341 SLVNMSQLTTLTLADNQLSGQIPSWLMNLTQLTVLDLGANNLEGGIPSSLFELVNLQSLS 400

Query: 330 MAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCN 389
           +  NS  GTVEL++LL   KNL +  +S NR S+L        T+ T  K +  GL SCN
Sbjct: 401 VGGNSLNGTVELNMLLKL-KNLTSFQLSGNRLSLLGYTR----TNVTLPKFKLLGLDSCN 455

Query: 390 LTKFPNFLENQNHLVILNLSDNRI 413
           LT+FP+FL NQ+ L +L+L++N+I
Sbjct: 456 LTEFPDFLRNQDELAVLSLANNKI 479

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359485822|ref|XP_003633342.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  232 bits (591), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 181/486 (37%), Positives = 242/486 (49%), Gaps = 98/486 (20%)

Query: 4   SGDFYAWKFDCRPTMASWKPEEGSVDCYSWDVVHCNKNTGHVIKLNLSHGCLFGSINSSS 63
           S D YA+     P +A+WK      DC SWD V C++ TGHVI L+L+  CL+GSINSSS
Sbjct: 58  SEDSYAY-----PKVATWKSHGEGSDCCSWDGVECDRETGHVIGLHLASSCLYGSINSSS 112

Query: 64  SLFKLVHLKWLNLALNDFNSSEIPPEIINLSRL--------------------------- 96
           +LF LVHL+ L+L+ NDFN SEIP  +  LSRL                           
Sbjct: 113 TLFSLVHLRRLDLSDNDFNYSEIPHGVSQLSRLRSLNLSDSQFSGQIPSEVLLALSKLVF 172

Query: 97  ---------ELQKPSFENLFEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCEL 147
                    +LQK    NL + L+  K L+L  V+I STIPH + NLSSLT + LR C L
Sbjct: 173 LDLSGNPMLQLQKHGLRNLVQNLTLFKKLHLSQVNISSTIPHALANLSSLTSLRLRECGL 232

Query: 148 QAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLN--------ELQGEAASFRCF------- 192
                       G  P  +  L  L  L L  N        E Q E +  +         
Sbjct: 233 H-----------GEFPKKILQLPSLQFLSLRYNPNLNIYFPEFQ-ETSPLKVLYLAGTSY 280

Query: 193 -GELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFS 251
            GELP SMG L SL ELD+S   F G +P+S+ +L  L  LDLS+N  SG  P    N +
Sbjct: 281 SGELPASMGKLSSLSELDISSCNFTGLVPSSLGHLTQLSYLDLSYNFFSGPIPSFLANLT 340

Query: 252 SLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNF 311
           +L  L+L S  F +     +G  T+L  L+L   N +G++  S+ N+  L ++ ++K   
Sbjct: 341 TLTYLSLTSNNFSAGTLAWLGEQTKLTILYLDQINLNGEIPSSLVNMSELTILNLSKNQL 400

Query: 312 SGQITSSLRNLTQLVVLDMAQNS------------------------YGGTVELDVLLTS 347
            GQI S L NLTQL  L + +N                           GTVEL  +L++
Sbjct: 401 IGQIPSWLMNLTQLTELYLQENKLEGPIPSSLFELVNLQYLYLHSNYLTGTVELH-MLSN 459

Query: 348 WKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLTKFPNFLENQNHLVILN 407
            KNL  L +S NR S+L+      +T+ T  K +  GL SCNLT+FP+FL+NQ  L +L 
Sbjct: 460 LKNLTDLQLSYNRISLLSY----TSTNATLPKFKLLGLASCNLTEFPDFLQNQQELEVLI 515

Query: 408 LSDNRI 413
           LS N+I
Sbjct: 516 LSTNKI 521

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147804670|emb|CAN66864.1| hypothetical protein VITISV_022039 [Vitis vinifera]

 Score =  224 bits (571), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 180/484 (37%), Positives = 246/484 (50%), Gaps = 87/484 (17%)

Query: 2   RISGDFYAWKFDCRPTMASWKP----EEGSVDCYSWDVVHCNKNTGHVIKLNLSHGCLFG 57
           R S D  A+     P +A WK     E    DC SWD V C++ TGHVI L+L+  CL+G
Sbjct: 56  RASADPSAY-----PKVAMWKSHGEGEGEESDCCSWDGVECDRETGHVIGLHLASSCLYG 110

Query: 58  SINSSSSLFKLVHLKWLNLALNDFNSSEIPPEIINLSRL--------------------- 96
           SINSSS+LF LVHL+ L+L+ NDFN S IP  +  LSRL                     
Sbjct: 111 SINSSSTLFSLVHLRRLDLSDNDFNYSVIPFGVGQLSRLRSLDLSYSRFSGQIPSKLLAL 170

Query: 97  --------------ELQKPSFENLFEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSL 142
                         +LQKP   NL + L++LK L+L  V+I STIPH + +LSSLT + L
Sbjct: 171 SKLVFLDLSANPMLQLQKPGLRNLVQNLTHLKKLHLSQVNIFSTIPHELASLSSLTSLFL 230

Query: 143 RNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDL--SLNELQGEA-------ASFRCFG 193
           R C L       + Q+      SL  LS   + DL   L E Q  +       A    +G
Sbjct: 231 RECGLHGEFPMKIFQLP-----SLQYLSVRYNPDLIGYLPEFQETSPLKMLYLAGTSFYG 285

Query: 194 ELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSL 253
           ELP S+G+L SL ELD+S   F    P+ + ++  L  LDLS N  SG+ P    N + L
Sbjct: 286 ELPASIGSLDSLTELDISSCNFTRLFPSPLAHIPQLSLLDLSNNSFSGQIPSFMANLTQL 345

Query: 254 KLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSG 313
             L+L S  F       +G  T+L +L+L   N +G++  S+ N+  L ++ +++    G
Sbjct: 346 TYLDLSSNDFSVGTLAWVGKQTKLTYLYLDQMNLTGEIPSSLVNMSELTILSLSRNQLIG 405

Query: 314 QITSSLRNLTQLVVLDMAQNS------------------------YGGTVELDVLLTSWK 349
           QI S L NLTQL  L + +N                           GTVEL  +L+  K
Sbjct: 406 QIPSWLMNLTQLTELYLEENKLEGPIPSSLFELVNLQSLYLHSNYLTGTVELH-MLSKLK 464

Query: 350 NLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLTKFPNFLENQNHLVILNLS 409
           NL  L +S NR S+L+    +AT  T     +  GL SCNLT+FP+FL+NQ+ LV+L+LS
Sbjct: 465 NLTGLLLSGNRLSLLSYTRTNATLPT----FKLLGLGSCNLTEFPDFLQNQDELVVLSLS 520

Query: 410 DNRI 413
           DN+I
Sbjct: 521 DNKI 524

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140505|ref|XP_002323623.1| predicted protein [Populus trichocarpa] gi|222868253|gb|EEF05384.1| predicted protein [Populus trichocarpa]

 Score =  221 bits (562), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 166/472 (35%), Positives = 237/472 (50%), Gaps = 91/472 (19%)

Query: 16  PTMASWKPEEGSVDCYSWDVVHCNKNTGHVIKLNLSHGCLFGSINSSSSLFKLVHLKWLN 75
           P +ASW+ +  S DC SWD V C+ ++GHVI L+LS  CL GSINS+SSLF LV L+ LN
Sbjct: 65  PKVASWRVDGESGDCCSWDGVECDGDSGHVIGLDLSSSCLHGSINSNSSLFHLVQLRRLN 124

Query: 76  LALNDFNSSEIPPEIINLSRL----------------------------------ELQKP 101
           L+ NDFN+S++P EI NLSRL                                  +L+KP
Sbjct: 125 LSGNDFNNSKMPSEIRNLSRLFDLNLSYSNFSGQIPAEILELSKLVSLDLRWNSLKLRKP 184

Query: 102 SFENLFEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQI--- 158
             ++L E L+NL+ L+L  VSI + +P  + NLSSL+ + L  C LQ      + Q+   
Sbjct: 185 GLQHLVEALTNLEVLHLSGVSISAEVPQIMANLSSLSSLFLSYCGLQGEFPMGIFQLPNL 244

Query: 159 ----------------------------------SGRIPSSLGNLSKLLHLDLSLNELQG 184
                                             SG++P+S+ N   +  LD++      
Sbjct: 245 RFLRIRYNPYLTGYLPEFQSGSQLEILYLTGTSFSGKLPASIRNHKSMKELDVA------ 298

Query: 185 EAASFRCF--GELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKL-SG 241
                 C+  G +P S+GNL  L  LDLS N F G++P S  NL  L  L LSFN   SG
Sbjct: 299 -----ECYFSGVIPSSLGNLTKLNYLDLSDNFFSGKIPPSFVNLLQLTNLSLSFNNFTSG 353

Query: 242 EFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSL 301
              W  GN + L  ++LR    +  +P S+ N T+L FL L  N  +G +   IGN   L
Sbjct: 354 TLDW-LGNLTKLNRVDLRGTDSYGDIPSSLRNLTQLTFLALNENKLTGQIPSWIGNHTQL 412

Query: 302 EVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRS 361
            ++ +      G I  S+  L  L VL++  N + GT+EL+  L  ++NL +L +S N  
Sbjct: 413 ILLGLGANKLHGPIPESIYRLQNLGVLNLEHNLFSGTLELNFPL-KFRNLFSLQLSYNNL 471

Query: 362 SVLTKATFDATTDTTSQKIQYRGLRSCNLTKFPNFLENQNHLVILNLSDNRI 413
           S+L        T     K++   L  CNL +FP+FL +QNHL IL+L+DN++
Sbjct: 472 SLLKS----NNTIIPLPKLKILTLSGCNLGEFPSFLRDQNHLGILDLADNKL 519

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359485824|ref|XP_003633343.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  216 bits (549), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 171/462 (37%), Positives = 234/462 (50%), Gaps = 90/462 (19%)

Query: 16  PTMASWK-----PEEGSVDCYSWDVVHCNKNTGHVIKLNLSHGCLFGSINSSSSLFKLVH 70
           P +A WK       EGS DC SWD V C++ TGHVI L+L+  CL+GSINSSS+LF LVH
Sbjct: 65  PKVAMWKSHGEGEREGS-DCCSWDGVECDRETGHVIGLHLASSCLYGSINSSSTLFSLVH 123

Query: 71  LKWLNLALNDFNSSEIPPEIINLSRL---------------------------------- 96
           L+ L+L+ NDFN SEIP  +  LSRL                                  
Sbjct: 124 LQRLDLSDNDFNYSEIPFGVGQLSRLRSLDLSFSGFSGQIPSELLALSKLVFLDLSANPK 183

Query: 97  -ELQKPSFENLFEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFL 155
            +LQKP   NL + L++LK L+L  V+I STIP+ + +LSSLT + L  C L        
Sbjct: 184 LQLQKPGLRNLVQNLTHLKKLHLSQVNISSTIPYELASLSSLTSLFLGECGLH------- 236

Query: 156 IQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGF 215
               G  P  +  L  L +L +  N              LP        LK LDL+   F
Sbjct: 237 ----GEFPMKIFQLPSLQYLTVRDN--------LDLISYLP-EFQETSPLKMLDLAGTSF 283

Query: 216 FGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFT 275
            GELPTSI  L SL +LD+S    +G  P S G+ + L  L+L +  F  ++P S+ N T
Sbjct: 284 SGELPTSIGRLGSLTELDISSCNFTGSVPSSLGHLTQLYYLDLSNNHFSGQIPSSMANLT 343

Query: 276 RLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSY 335
           +L +L L +N+F+   L  +G    L  +Y+ + N  G+I  SL N++QL +L ++ N  
Sbjct: 344 QLIYLSLSWNDFNVGTLSWLGQQTKLTYLYLNQINLIGEIPFSLVNMSQLNILSLSDNQL 403

Query: 336 G------------------------GTVELDVLLTSWKNLEALDISLNRSSVLTKATFDA 371
                                    GTVEL  LL+  KNL  L +S NR S L+      
Sbjct: 404 SGQIPSSLFELVNLQGLYLLSNYLNGTVELQ-LLSKLKNLIYLQLSDNRLSFLSY----T 458

Query: 372 TTDTTSQKIQYRGLRSCNLTKFPNFLENQNHLVILNLSDNRI 413
            T+ T  K ++ GL SCNLT+FP+FL+NQ+ L I+ LS+N+I
Sbjct: 459 RTNATLPKFKHLGLGSCNLTEFPDFLQNQHELEIITLSENKI 500

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255548694|ref|XP_002515403.1| serine/threonine-protein kinase bri1, putative [Ricinus communis] gi|223545347|gb|EEF46852.1| serine/threonine-protein kinase bri1, putative [Ricinus communis]

 Score =  214 bits (546), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 166/476 (34%), Positives = 239/476 (50%), Gaps = 88/476 (18%)

Query: 12  FDCRPT--MASWKPEEGSVDCYSWDVVHCNKNTGHVIKLNLSHGCLFGSINSSSSLFKLV 69
           F C P+  ++SW  +    +C SW  + CN NTGHVI L+LS  CL+GSINSSS++F+L+
Sbjct: 47  FACDPSAKLSSWSLQGDMNNCCSWGGIECNNNTGHVIALDLSSSCLYGSINSSSTIFRLI 106

Query: 70  HLKWLNLALNDFNSSEIPPEIINLSRL--------------------------------- 96
           +L  LNLA N+FN+S IP EI  LS L                                 
Sbjct: 107 YLTSLNLADNNFNASTIPSEIRTLSSLTYLNLSLSNFSNQIPIQVLELSKLVSLDLSDNP 166

Query: 97  -ELQKPSFENLFEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFL 155
            +LQ PS ++L EKL++L  L+L  V+I S +P ++ NLS L+ + LR+C+LQ      +
Sbjct: 167 LKLQNPSLKDLVEKLAHLSQLHLNGVTISSEVPQSLANLSFLSSLLLRDCKLQGEFPVKI 226

Query: 156 IQI-------------------------------------SGRIPSSLGNLSKLLHLDLS 178
            Q+                                     SG++P S+GNL  L      
Sbjct: 227 FQLPNLRILIVRLNPDLTGYLPEFQVGSSLEALWLEGTNFSGQLPHSIGNLKLLSSF--- 283

Query: 179 LNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNK 238
                  A S R  G +P S+G+LG+L  LDLS N F G++P+S  NL  L  L LSFN 
Sbjct: 284 ------VAGSCRFGGPIPPSIGDLGNLNFLDLSYNNFSGKIPSSFGNLLQLTYLSLSFNN 337

Query: 239 LSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNL 298
            S    +  GN ++L  LNL        +P S+GN T+L +L L  N  +G +   +GNL
Sbjct: 338 FSPGTLYWLGNLTNLYFLNLAQTNSHGNIPSSVGNMTKLIYLRLYSNKLTGQVPSWLGNL 397

Query: 299 RSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISL 358
            +L  + +A     G I  S+  L  L VL++  N+  GT++ D+ L S KNL +L +S 
Sbjct: 398 TALLELQLAANELQGPIPESIFELPSLQVLELHSNNLSGTLKFDLFLKS-KNLVSLQLSD 456

Query: 359 NRSSVLTKATFDATTDTTSQKIQYRGLRSCNLTKFPNFLENQN-HLVILNLSDNRI 413
           N  S+++    + T      + +  GL SCNL++FP FL  +N  L  L+LS N I
Sbjct: 457 NHLSLISSPPINITV----HRFKTLGLNSCNLSEFPFFLRGENDDLEHLDLSQNEI 508

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147782974|emb|CAN66148.1| hypothetical protein VITISV_036826 [Vitis vinifera]

 Score =  209 bits (533), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 165/476 (34%), Positives = 223/476 (46%), Gaps = 100/476 (21%)

Query: 16   PTMASWKPEEGSVDCYSWDVVHCNKNTGHVIKLNLSHGCLFGSINSSSSLFKLVHLKWLN 75
            P +A+WK EEGS DC SWD V CNK+TGHVI L+L   CL+GSINSSS+LF LVHL+ L+
Sbjct: 797  PKVATWKSEEGS-DCCSWDGVECNKDTGHVIGLDLGSSCLYGSINSSSTLFLLVHLQSLD 855

Query: 76   LALNDFN------------------------SSEIPPEIINLSRL----------ELQKP 101
            L+ NDFN                        S +IP E++ LS+L          +LQKP
Sbjct: 856  LSDNDFNYSNIPSGVDQLSSLRSLNLSSSRFSGQIPSEVLALSKLVFLDLSQNQXKLQKP 915

Query: 102  SFENLFEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGR 161
               NL +KL +LK L+L  V+I S +P  + N SSL  + L NC L           SG 
Sbjct: 916  DLRNLVQKLIHLKNLDLSQVNISSPVPDTLANYSSLXSLFLENCGL-----------SGE 964

Query: 162  IPSSLGNLSKLLHLDLSLN-ELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELP 220
             P  +  L  L  L +  N +L G    F+              LK L L+   F G LP
Sbjct: 965  FPRDILQLPSLQFLSVRNNPDLTGYLPEFQ----------ETSPLKLLTLAGTSFSGGLP 1014

Query: 221  TSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFL 280
             S+ NL+SL +LD+S    +G    S G  S L  L+L    F  ++P S+ N ++L FL
Sbjct: 1015 ASVDNLYSLNELDISSCHFTGLVSSSIGQLSQLTHLDLSRNSFRGQIPSSLANLSQLTFL 1074

Query: 281  FLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTV- 339
             +  NNFSG+ +  +G L  L  + +   N  G+I   L NLTQL  L +  N   G + 
Sbjct: 1075 EVSSNNFSGEAMDWVGKLTKLTHLGLDSINLKGEIPPFLANLTQLDYLSLEFNQLTGKIP 1134

Query: 340  -------ELDVLLTSWKNLEA-----------LDISLNRSSVLTKATF------------ 369
                    L  L   +  L             L+I   RS  LT                
Sbjct: 1135 SWVMNLTRLTSLALGYNKLHGPIPSSIFELVNLEILYLRSXDLTGILELDMLLKLKKLTR 1194

Query: 370  ------------DATTDTTSQKIQYRGLRSCNLTKFPNFLENQNHLVILNLSDNRI 413
                        D +++    K +  GL SCNL +FP+FL NQ+ L +L LS+N+I
Sbjct: 1195 LGLXDNKLLLRTDTSSNGXGPKFKVLGLASCNLGEFPHFLRNQDELELLKLSNNKI 1250

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359490156|ref|XP_003634044.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  208 bits (530), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 169/450 (37%), Positives = 215/450 (47%), Gaps = 112/450 (24%)

Query: 4   SGDFYAWKFDCRPTMASWKP----EEGSVDCYSWDVVHCNKNTGHVIKLNLSHGCLFGSI 59
           SGD  A+     P +A WK     EEGS DC SWD V C++ TGHVI L+L+  CL+GSI
Sbjct: 36  SGDPSAY-----PKVAMWKSHGEGEEGS-DCCSWDGVECDRETGHVIGLHLASSCLYGSI 89

Query: 60  NSSSSLFKLVHLKWLNLALNDFNSSEIPPEIINLSR------------------------ 95
           NS+S+LF LVHL+ L+L+ NDFN S+IP  +  LSR                        
Sbjct: 90  NSNSTLFSLVHLRRLDLSDNDFNYSQIPFGVGQLSRLRSLDLSSDRFAGQIPSELLALSK 149

Query: 96  -----------LELQKPSFENLFEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRN 144
                      L+LQKP    L + L++LK L+L  V+I STIPH + NLSSL  + LR 
Sbjct: 150 LVFLNLSANPMLQLQKPGLRYLVQNLTHLKELHLRQVNISSTIPHELANLSSLRTLFLRE 209

Query: 145 CELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLN-ELQGEAASFRCFGELPISMGNLG 203
           C L            G  P ++  L  L  L +  N +L G    F+             
Sbjct: 210 CGLH-----------GEFPMNIFQLPSLQFLSVRYNPDLIGYLPEFQ----------ETS 248

Query: 204 SLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGF 263
            LK L LS   F GELPTSI  L SL KLD+S    +G  P   G+ S L  L+L +  F
Sbjct: 249 PLKLLYLSGTSFSGELPTSIGRLGSLTKLDISSCNFTGLVPSPLGHLSQLSYLDLSNNFF 308

Query: 264 WSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLT 323
             ++P S+ N TRL FL L  NN  G                         I +SL  L 
Sbjct: 309 SGQIPSSMANLTRLTFLDLSLNNLEGG------------------------IPTSLFELV 344

Query: 324 QLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYR 383
            L  L +A NS  GTVE                 LNR S+L        T+ T  K +  
Sbjct: 345 NLQYLSVADNSLNGTVE-----------------LNRLSLLGY----TRTNVTLPKFKLL 383

Query: 384 GLRSCNLTKFPNFLENQNHLVILNLSDNRI 413
           GL SCNLT+FP+FL+NQ+ L +L LSDN+I
Sbjct: 384 GLDSCNLTEFPDFLQNQDELEVLFLSDNKI 413

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140509|ref|XP_002323625.1| predicted protein [Populus trichocarpa] gi|222868255|gb|EEF05386.1| predicted protein [Populus trichocarpa]

 Score =  207 bits (528), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 163/473 (34%), Positives = 234/473 (49%), Gaps = 93/473 (19%)

Query: 16  PTMASWKPEEGSVDCYSWDVVHCNKNTGHVIKLNLSHGCLFGSINSSSSLFKLVHLKWLN 75
           P +ASWK +  S DC SW+ V C++++GHVI L+LS  CL GSI+S+SSLF LV L+ LN
Sbjct: 34  PKVASWKVDGESGDCCSWEGVECDRDSGHVIGLDLSSSCLHGSIDSNSSLFHLVQLRRLN 93

Query: 76  LALNDFNSSEIPPEIINLSR----------------------------------LELQKP 101
           LA NDFN+S+IP EI NL R                                  L+LQKP
Sbjct: 94  LADNDFNNSKIPSEIRNLPRLFDLNLSITGFTGQIPAEILELSKLVSLDLGLNSLKLQKP 153

Query: 102 SFENLFEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQI--- 158
             ++L E L+NL+ L+L +V+I + +P  + NLSSL+ + LR+C LQ      + Q+   
Sbjct: 154 GLQHLVEALTNLEVLHLSEVNISAKVPQVMTNLSSLSSLFLRDCGLQGEFPMGIFQLPNL 213

Query: 159 ----------------------------------SGRIPSSLGNLSKLLHLDLSLNELQG 184
                                             SG++P SLGNL  +   D++      
Sbjct: 214 RFLNIRYNPHLTGYLPEFQLGNQLEKLLLARTSFSGQLPGSLGNLKSMKEFDVA------ 267

Query: 185 EAASFRCF--GELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSL-EKLDLSFNKLSG 241
                 C+  G +P S+GNL  L  LDLS N FFG++P S+ NL  L +    S N  SG
Sbjct: 268 -----GCYFSGVIPSSLGNLTKLNYLDLSSNVFFGKIPRSVVNLLQLTDLSLSSNNFSSG 322

Query: 242 EFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSL 301
              W   N + L  ++L     + ++P  +GN T+L  L L  N  +G +   IGN   L
Sbjct: 323 TLHWLC-NLTKLNYVDLAQTNSYGEIPSCLGNLTQLTELNLDANELTGQIPSWIGNKTQL 381

Query: 302 EVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRS 361
             + +      G I+ S+  L  L +LD+ +N + GTVE  +L +  ++L +  +S N  
Sbjct: 382 ISLDLGHNKLHGPISESIFWLPNLEILDLEENLFSGTVEFGLLKS--RSLVSFQLSGNNL 439

Query: 362 SVLTKATFDATTDTTSQKIQYRGLRSCNLT-KFPNFLENQNHLVILNLSDNRI 413
           SV+      A       KIQ  GL  CNL+ +FP+FL  QNHL  + L  N+I
Sbjct: 440 SVIGNHNDSAAL----PKIQILGLGGCNLSGEFPSFLHGQNHLEFVELGGNKI 488

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255548700|ref|XP_002515406.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223545350|gb|EEF46855.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  206 bits (524), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 168/467 (35%), Positives = 239/467 (51%), Gaps = 73/467 (15%)

Query: 14  CRPT----MASWKPEEGSVDCYSWDVVHCNKNTGHVIKLNLSHGCLFGSINSSSSLFKLV 69
           C P+    + +WK    + DC SWD V C+K+TG+VI L+L+  CL+GSINSSSSLF+LV
Sbjct: 4   CEPSGYTKVNTWKLGSNTSDCCSWDGVECDKDTGYVIGLDLTSSCLYGSINSSSSLFRLV 63

Query: 70  HLKWLNLALNDFNSSEIPP------------------------EIINLSRL--------- 96
           HL  LNLA N+FN S+IPP                        EI+ LS L         
Sbjct: 64  HLTSLNLAYNNFNRSKIPPGIMNLLSLTSLNLSFSNFSDQIPSEILELSNLVSLDLSDNP 123

Query: 97  -ELQKPSFENLFEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFL 155
             L++PS ++L E+L +L  L+L  V I S +P ++ NLSSL+ + LR+C+LQ      +
Sbjct: 124 LMLRQPSLKDLVERLIHLTELHLSGVIISSEVPQSLANLSSLSSLLLRDCKLQGQFPVTI 183

Query: 156 IQI--------------SGRIPSSLGNLSKLLHLDLSLNELQGE---------------A 186
            Q+              +G +P    N S L  L L      G+               A
Sbjct: 184 FQLPNLRFLSVRSNPFLAGYLPE-FKNGSTLEMLRLERTNFSGQLPYSIRNLKSLSNFVA 242

Query: 187 ASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWS 246
           +  R +G +P S+GNL +L  LDLS N F G++P+S  NL  L  L LSFN  S    + 
Sbjct: 243 SGCRFWGAIPSSVGNLSNLNFLDLSDNNFSGQIPSSFGNLLQLSYLSLSFNSFSPGTLYW 302

Query: 247 TGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYI 306
            GN ++L LL L     +  +P S+ N T+L +L+L  N  +G +   IGN   L  + +
Sbjct: 303 LGNLTNLYLLGLVETNSYGDIPSSVQNLTQLSYLWLHSNQLTGQIPSWIGNFTHLVELQL 362

Query: 307 AKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTK 366
           AK    G I  S+  L  L VL++  N   GT++ D++L   K L  L +S N  S++  
Sbjct: 363 AKNKLQGPIPESIFELPNLEVLELHSNILSGTLKSDLILKP-KYLYDLQLSENNLSLVGS 421

Query: 367 ATFDATTDTTSQKIQYRGLRSCNLTKFPNFLENQNHLVILNLSDNRI 413
              +AT      K++  GL SCNL +FP FL  QN L  L+LS N++
Sbjct: 422 PNSNATLS----KLRVLGLSSCNLREFPAFLRWQNELEFLDLSRNKL 464

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	413
TAIR|locus:2205005	1019	RLP7 "AT1G47890" [Arabidopsis	0.719	0.291	0.342	4e-32
TAIR|locus:2825762	994	RLP6 "AT1G45616" [Arabidopsis	0.895	0.372	0.283	3.5e-31
TAIR|locus:2074633	943	RLP35 "AT3G11080" [Arabidopsis	0.769	0.337	0.337	4e-31
TAIR|locus:2055772	983	RLP19 "receptor like protein 1	0.740	0.311	0.325	7.2e-31
TAIR|locus:2825384	847	RLP12 "AT1G71400" [Arabidopsis	0.772	0.376	0.321	4.9e-30
TAIR|locus:2094603	835	RLP37 "receptor like protein 3	0.801	0.396	0.319	2.1e-29
TAIR|locus:2046357	890	RLP23 "receptor like protein 2	0.392	0.182	0.416	6.2e-21
TAIR|locus:2086974	881	RLP41 "AT3G25010" [Arabidopsis	0.859	0.402	0.289	2.2e-28
TAIR|locus:2087253	884	RLP39 "AT3G24900" [Arabidopsis	0.869	0.406	0.289	9.6e-28
TAIR|locus:2085537	894	RLP34 "AT3G11010" [Arabidopsis	0.765	0.353	0.305	9e-27

TAIR|locus:2205005 RLP7 "AT1G47890" [Arabidopsis thaliana (taxid:3702)]

 Score = 363 (132.8 bits), Expect = 4.0e-32, P = 4.0e-32
 Identities = 111/324 (34%), Positives = 162/324 (50%)

Query:    29 DCYSWDVVHCNKNTGHVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPP 88
             DC SWD + C+  +G+VI L+LS   L+G + S+SSLFKL HL+ LNLA N+FN+S IP 
Sbjct:   102 DCCSWDGITCDAKSGNVIGLDLSSIFLYGQLKSNSSLFKLRHLRDLNLANNNFNNSPIPA 161

Query:    89 E---IINLSRLELQKPSFE-----NLFEKLSNLKTLNLG--DVSIDSTIPH-NI-KNLSS 136
             E   +  L RL+L + S       NL + L+ L +L+L   D   D +  + +I K+   
Sbjct:   162 EFDKLTGLERLDLSQSSLSGQIPINLLQ-LTKLVSLDLSSSDFFGDESFHYLSIDKSFLP 220

Query:   137 LTFVSLRNCELQAMCSFFLIQISGRIPXXXXXXXXXXXXXXXXXXXQGEAASFRCFGELP 196
             L   +LRN     M S+  ++IS  IP                            FGE P
Sbjct:   221 LLARNLRNLRELDM-SY--VKISSEIPEEFSNIRSLRSLNLN---------GCNLFGEFP 268

Query:   197 ISMGNLGSLKELDLSQN-GFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKL 255
              S+  + +L+ +DL  N    G LP    N  SL KL + +   SG  P S  +  +L  
Sbjct:   269 SSILLIPNLQSIDLGNNPNLRGNLPVFHENN-SLLKLTILYTSFSGAIPDSISSLKNLTS 327

Query:   256 LNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQI 315
             L L    F  K+P S+GN + L  L L  NN  G++  SIGNL  L   Y+     SG +
Sbjct:   328 LTLSVSYFSGKIPFSLGNLSHLSHLSLSSNNLIGEIPSSIGNLNQLTNFYVGGNKLSGNL 387

Query:   316 TSSLRNLTQLVVLDMAQNSYGGTV 339
              ++L NLT+L  + ++ N + G++
Sbjct:   388 PATLSNLTKLNTISLSSNQFTGSL 411

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2825762 RLP6 "AT1G45616" [Arabidopsis thaliana (taxid:3702)]

 Score = 354 (129.7 bits), Expect = 3.5e-31, P = 3.5e-31
 Identities = 115/406 (28%), Positives = 176/406 (43%)

Query:    16 PTMASWKPEEGSVDCYSWDVVHCNKNTGHVIKLNLSHGCLFGSINSSSSLFKLVHLKWLN 75
             P   SW       DC  WD + C+  +G V  L+LS  CL G +  +SSLF+L HL+ +N
Sbjct:    73 PKTKSWTKNS---DCCYWDGITCDTKSGKVTGLDLSCSCLHGRLEPNSSLFRLQHLQSVN 129

Query:    76 LALNDFNSSEIPPEI---INLSRLELQKPSFENLFEKLSNLKTLNLGDVSIDSTIPHNIK 132
             LA N+F +S IP E    + L RL L + SF      +  L+  NL  + + S+ P++  
Sbjct:   130 LAYNNFTNSPIPAEFSKFMRLERLNLSRSSFSGHIS-IKLLQLTNLVSLDLSSSFPYSPS 188

Query:   133 NLS----------SLTFVSLRNCELQAMCSFFLIQISGRIPXXXXXXXXXXXXXXXXXXX 182
             +LS          +L F++LR  ++ +      + IS  IP                   
Sbjct:   189 SLSIEKPLFLHLLALNFMNLRELDMSS------VDISSAIPIEFSYMWSLRSLTL----- 237

Query:   183 QGEAASFRCFGELPISMGNLGSLKELDLSQN-GFFGELPTSIRNLFSLEKLDLSFNKLSG 241
             +G        G  P S+  + +L+ + L  N    G LP  +RN  SL KL +     SG
Sbjct:   238 KG----CNLLGRFPNSVLLIPNLESISLDHNLNLEGSLPNFLRNN-SLLKLSIYNTSFSG 292

Query:   242 EFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSL 301
               P S  N   L  L L+   F  ++P S+ + + L  L L  NNF G++  S+ NL+ L
Sbjct:   293 TIPNSISNLKHLTSLKLQQSAFSGRIPSSLRSLSHLSNLVLSENNFVGEIPSSVSNLKQL 352

Query:   302 EVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRS 361
              +  ++  N +G   SSL NL QL  +D+  N + G   L   ++   NLE      N  
Sbjct:   353 TLFDVSDNNLNGNFPSSLLNLNQLRYIDICSNHFTGF--LPPTISQLSNLEFFSACDNSF 410

Query:   362 SVLXXXXXXXXXXXXSQKIQYRGLRSCNLTKFPNFLENQNHLVILN 407
             +              +  + Y  L      K  + L N   L++ N
Sbjct:   411 TGSIPSSLFNISSLTTLGLSYNQLNDTTNIKNISLLHNLQRLLLDN 456

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0016020 "membrane" evidence=IDA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2074633 RLP35 "AT3G11080" [Arabidopsis thaliana (taxid:3702)]

 Score = 353 (129.3 bits), Expect = 4.0e-31, P = 4.0e-31
 Identities = 119/353 (33%), Positives = 172/353 (48%)

Query:    16 PTMASWKPEEGSVDCYSWDVVHCNKNTGHVIKLNLSHGCLFGSINSSSSLFKLVHLKWLN 75
             PT  SW+    + DC +W+ + C+  +G VI+L+LS   L+GS +S+SSLF+L +L+ L+
Sbjct:    75 PTTESWR---NNSDCCNWEGITCDTKSGEVIELDLSCSWLYGSFHSNSSLFRLQNLRVLD 131

Query:    76 LALNDFNSSEIPPEIINLSRL---ELQKPSFENLF----EKLSNLKTLNLGDVSIDSTIP 128
             L  ND +  EIP  I NLS L    L    F  L     E LS L +L+L        IP
Sbjct:   132 LTQNDLDG-EIPSSIGNLSHLTSLHLSYNQFLGLIPSSIENLSRLTSLHLSSNQFSGQIP 190

Query:   129 HNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPXXXXXXXXXXXXXXXXXXXQGEAAS 188
              +I NLS LT  SL   EL +       Q SG+IP                      +  
Sbjct:   191 SSIGNLSHLT--SL---ELSSN------QFSGQIPSSIGNLSNLTFLSL-------PSND 232

Query:   189 FRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTG 248
             F  FG++P S+GNL  L  L LS N F GE+P+S  NL  L  L +  NKLSG  P S  
Sbjct:   233 F--FGQIPSSIGNLARLTYLYLSYNNFVGEIPSSFGNLNQLIVLQVDSNKLSGNVPISLL 290

Query:   249 NFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAK 308
             N + L  L L    F   +P++I   + L       N F+G L  S+ N+  L  + ++ 
Sbjct:   291 NLTRLSALLLSHNQFTGTIPNNISLLSNLMDFEASNNAFTGTLPSSLFNIPPLIRLDLSD 350

Query:   309 CNFSGQIT-SSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDIS-LN 359
                +G +   ++ + + L  L +  N++ GT+     L+ + NL   D+S LN
Sbjct:   351 NQLNGTLHFGNISSPSNLQYLIIGSNNFIGTIPRS--LSRFVNLTLFDLSHLN 401

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2055772 RLP19 "receptor like protein 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 351 (128.6 bits), Expect = 7.2e-31, P = 7.2e-31
 Identities = 114/350 (32%), Positives = 162/350 (46%)

Query:    29 DCYSWDVVHCNKNTGHVIKLNLSHGCLFGSINSSSSLFKLVHLKWL---NLALNDFNSSE 85
             DC  WD + C+   G VI+L+LS  CL G +NS+SSLF+L  L++L   +L+ NDF   +
Sbjct:    69 DCCYWDGIKCDAKFGDVIELDLSFSCLRGQLNSNSSLFRLPQLRFLTTLDLSNNDF-IGQ 127

Query:    86 IPPEIINLSRLELQKPSFENLFEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFV--SLR 143
             IP  +                 E LSNL TL+L        IP +I NLS L FV  S  
Sbjct:   128 IPSSL-----------------ETLSNLTTLDLSRNHFSGRIPSSIGNLSHLIFVDFSHN 170

Query:   144 NCE---------LQAMCSFFLI--QISGRIPXXXXXXXXXXXXXXXXXXXQGEAASFRCF 192
             N           L  + SF L     SGR+P                        SF  F
Sbjct:   171 NFSGQIPSSLGYLSHLTSFNLSYNNFSGRVPSSIGNLSYLTTLRLSRN-------SF--F 221

Query:   193 GELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSS 252
             GELP S+G+L  L +L L  N F G++P+S+ NL  L  +DL  N   GE P+S GN S 
Sbjct:   222 GELPSSLGSLFHLTDLILDTNHFVGKIPSSLGNLSHLTSIDLHKNNFVGEIPFSLGNLSC 281

Query:   253 LKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFS 312
             L    L       ++P S GN  +L  L +  N  SG    ++ NLR L  + +     +
Sbjct:   282 LTSFILSDNNIVGEIPSSFGNLNQLDILNVKSNKLSGSFPIALLNLRKLSTLSLFNNRLT 341

Query:   313 GQITSSLRNLTQLVVLDMAQNSYGGTVELDVL-LTSWKNLEALDISLNRS 361
             G + S++ +L+ L + D  +N + G +   +  + S K +   +  LN S
Sbjct:   342 GTLPSNMSSLSNLKLFDATENHFTGPLPSSLFNIPSLKTITLENNQLNGS 391

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2825384 RLP12 "AT1G71400" [Arabidopsis thaliana (taxid:3702)]

 Score = 342 (125.4 bits), Expect = 4.9e-30, P = 4.9e-30
 Identities = 113/351 (32%), Positives = 164/351 (46%)

Query:    18 MASWK-PEEGSVDCYSWDVVHCNKNTGHVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNL 76
             M  W+ P   S DC  W+ V CN  +G VI L++ +  L   + ++SSLFKL +L+ L+L
Sbjct:    58 MNQWRGPWNKSTDCCLWNGVTCNDKSGQVISLDIPNTFLNNYLKTNSSLFKLQYLRHLDL 117

Query:    77 ALNDFNSSEIPPEIINLSRLELQKPSFENLFEK-------LSNLKTLNLGDVSIDSTIPH 129
               N     EIP  + NLS L L    F     +       L+ L+ L L +  +   IP 
Sbjct:   118 T-NCNLYGEIPSSLGNLSHLTLVNLYFNKFVGEIPASIGNLNQLRHLILANNVLTGEIPS 176

Query:   130 NIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPXXXXXXXXXXXXXXXXXXXQGEAASF 189
             ++ NLS L      N EL      F  ++ G+IP                       AS 
Sbjct:   177 SLGNLSRLV-----NLEL------FSNRLVGKIPDSIGDLKQLRNLSL---------ASN 216

Query:   190 RCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGN 249
                GE+P S+GNL +L  L L+ N   GE+P SI NL  L  +    N LSG  P S  N
Sbjct:   217 NLIGEIPSSLGNLSNLVHLVLTHNQLVGEVPASIGNLIELRVMSFENNSLSGNIPISFAN 276

Query:   250 FSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKC 309
              + L +  L S  F S  P  +  F  L++  + +N+FSG    S+  + SLE IY+ + 
Sbjct:   277 LTKLSIFVLSSNNFTSTFPFDMSIFHNLEYFDVSYNSFSGPFPKSLLLIPSLESIYLQEN 336

Query:   310 NFSGQIT-SSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLN 359
              F+G I  ++  + T+L  L + +N   G +   +  +   NLE LDIS N
Sbjct:   337 QFTGPIEFANTSSSTKLQDLILGRNRLHGPIPESI--SRLLNLEELDISHN 385

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2094603 RLP37 "receptor like protein 37" [Arabidopsis thaliana (taxid:3702)]

 Score = 336 (123.3 bits), Expect = 2.1e-29, P = 2.1e-29
 Identities = 115/360 (31%), Positives = 167/360 (46%)

Query:    17 TMASWKPEEGSVDCYSWDVVHCNKNTGHVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNL 76
             T  SW     +VDC SW+ V C+   G VI LNL       S+ SSSSLFKL HL+ L L
Sbjct:    63 TTLSWNK---TVDCCSWEGVTCDATLGEVISLNLVSYIANTSLKSSSSLFKLRHLRHLEL 119

Query:    77 ALNDFNSSEIPPEIINLSRLELQKPSFENLFEK----LSNLKTLNLGDVSIDS---TIPH 129
             +  +    EIP  I NLS L     SF  L  +    + NL  L   D+ +++    IP 
Sbjct:   120 SHCNLQG-EIPSSIGNLSHLTYLDLSFNQLVGEFPVSIGNLNQLEYIDLWVNALGGNIPT 178

Query:   130 NIKNLSSLTFVSLRNCE-------LQAMCSFFLIQISGRIPXXXXXXXXXXXXXXXXXXX 182
             +  NL+ L+ + LR  +       L  + S  ++ +S                       
Sbjct:   179 SFANLTKLSELHLRQNQFTGGDIVLSNLTSLSIVDLSSNYFNSTISADLSQLHNLERFWV 238

Query:   183 QGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFS---LEKLDLSFNKL 239
                  SF  FG  P  +  + SL ++ LS+N F G  P +  N  S   L +LD+S+N L
Sbjct:   239 SEN--SF--FGPFPSFLLMIPSLVDICLSENQFEG--PINFGNTTSSSKLTELDVSYNNL 292

Query:   240 SGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLR 299
              G  P S     SL+ L L    F  +VP SI     L  L+L  NNF G +  SI  L 
Sbjct:   293 DGLIPKSISTLVSLEHLELSHNNFRGQVPSSISKLVNLDGLYLSHNNFGGQVPSSIFKLV 352

Query:   300 SLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLN 359
             +LE + ++  +F G++ SS+  L  L  LD++ N + G V   +  +S   L+++D+S N
Sbjct:   353 NLEHLDLSHNDFGGRVPSSISKLVNLSSLDLSYNKFEGHVPQCIWRSS--KLDSVDLSYN 410

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2046357 RLP23 "receptor like protein 23" [Arabidopsis thaliana (taxid:3702)]

 Score = 269 (99.8 bits), Expect = 6.2e-21, P = 6.2e-21
 Identities = 70/168 (41%), Positives = 96/168 (57%)

Query:   195 LPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLK 254
             LP   GNL  L+ L LS NGF G++P+S  NL  L +LDLS+NKL+G FP   G    L 
Sbjct:   115 LPSGFGNLKRLEGLFLSSNGFLGQVPSSFSNLTMLAQLDLSYNKLTGSFPLVRG-LRKLI 173

Query:   255 LLNLRSCGFWSKV-PHS-IGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFS 312
             +L+L    F   + P+S +    +L++L L FNNFS  L    GNL  LE + ++   FS
Sbjct:   174 VLDLSYNHFSGTLNPNSSLFELHQLRYLNLAFNNFSSSLPSKFGNLHRLENLILSSNGFS 233

Query:   313 GQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNR 360
             GQ+ S++ NLT+L  L + QN    +  L   LT   NL  LD+S N+
Sbjct:   234 GQVPSTISNLTRLTKLYLDQNKLTSSFPLVQNLT---NLYELDLSYNK 278

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2086974 RLP41 "AT3G25010" [Arabidopsis thaliana (taxid:3702)]

 Score = 327 (120.2 bits), Expect = 2.2e-28, P = 2.2e-28
 Identities = 113/390 (28%), Positives = 181/390 (46%)

Query:    33 WDVVHCNKNTGHVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPPEIIN 92
             W+ V C+ +TG V K+     CL G++ S+SSLF+   L+ L L  N+F SS I  +   
Sbjct:    63 WNGVWCDNSTGAVTKIQFM-ACLSGTLKSNSSLFQFHELRSLLLIHNNFTSSSISSKFGM 121

Query:    93 LSRLELQKPSFENLFEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCS 152
             L++LE+       LF   S      LG V      P +  NLS L+ + L + EL    S
Sbjct:   122 LNKLEV-------LFLSSSGF----LGQV------PFSFSNLSMLSALDLSDNELTGSLS 164

Query:   153 FF-------LIQIS-GRIPXXXXXXXXXXXXXXXXXXXQGEAASFRCFGELPISMGNLGS 204
             F        ++ +S                         G + SF     LP   GNL  
Sbjct:   165 FVRNLRKLRVLDVSYNHFSGILNPNSSLFELHHLTYLSLG-SNSFTS-STLPYEFGNLNK 222

Query:   205 LKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFW 264
             L+ LD+S N FFG++P +I NL  L +L L  N  +G  P    N + L +L L    F 
Sbjct:   223 LELLDVSSNSFFGQVPPTISNLTQLTELYLPLNDFTGSLPL-VQNLTKLSILALFGNHFS 281

Query:   265 SKVPHSIGNFTRLQFLFLGFNNFSGDL-LGSIGNLRSLEVIYIAKCNFSGQITSSLRNLT 323
               +P S+     L +L L  NN +G + + +  +   LE +Y+ K +F G+I   +  L 
Sbjct:   282 GTIPSSLFTMPFLSYLSLKGNNLNGSIEVPNSSSSSRLESLYLGKNHFEGKILKPISKLI 341

Query:   324 QLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLXXXXXXXXXXXXSQKIQYR 383
              L  LD++  S    ++L  L +S+K+L  LD++ +  S              S  ++  
Sbjct:   342 NLKELDLSFLSTSYPIDLS-LFSSFKSLLVLDLTGDWIS----QAGLSSDSYISLTLEAL 396

Query:   384 GLRSCNLTKFPNFLENQNHLVILNLSDNRI 413
              ++ CN++ FPN L++  +L  +++S+NR+
Sbjct:   397 YMKQCNISDFPNILKSLPNLECIDVSNNRV 426

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

TAIR|locus:2087253 RLP39 "AT3G24900" [Arabidopsis thaliana (taxid:3702)]

 Score = 321 (118.1 bits), Expect = 9.6e-28, P = 9.6e-28
 Identities = 110/380 (28%), Positives = 173/380 (45%)

Query:    36 VHCNKNTGHVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPPEIINLSR 95
             V C+ +TG V+KL L   CL G++ S+SSLF+   L+ L L+ N+F  S IP E   L++
Sbjct:    67 VWCDNSTGAVMKLRL-RACLSGTLKSNSSLFQFHQLRHLYLSYNNFTPSSIPSEFGMLNK 125

Query:    96 LELQKPSFENLFEKL-SNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFF 154
             LE+   S      ++ S+   L++    + + + H+ +   SL+FV  RN     +    
Sbjct:   126 LEVLFMSTGGFLGQVPSSFSNLSM----LSALLLHHNELTGSLSFV--RNLRKLTILDVS 179

Query:   155 LIQISGRIPXXXXXXXXXXXXXXXXXXXQGEAASFRCFGELPISMGNLGSLKELDLSQNG 214
                 SG +                       ++S      LP   GNL  L+ LD+S N 
Sbjct:   180 HNHFSGTLNPNSSLFELHNLAYLDLGSNNFTSSS------LPYEFGNLNKLELLDVSSNS 233

Query:   215 FFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNF 274
             FFG++P +I NL  L +L L  N  +G  P    N + L +L+L    F   +P S+   
Sbjct:   234 FFGQVPPTISNLTQLTELYLPLNDFTGSLPL-VQNLTKLSILHLSDNHFSGTIPSSLFTM 292

Query:   275 TRLQFLFLGFNNFSGDLLGSIGNLRS-LEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQN 333
               L +L LG NN SG +     +L S LE + + + +F G+I   +  L  L  L ++  
Sbjct:   293 PFLSYLDLGGNNLSGSIEVPNSSLSSRLENLNLGENHFEGKIIEPISKLINLKELHLSFL 352

Query:   334 SYGGTVELDVLLTSWKNLEALDISLNRSSVLXXXXXXXXXXXXSQKIQYRGLRSCNLTKF 393
             +    + L  L +S K L  LD+S    S                 +    L+ CN++ F
Sbjct:   353 NTSYPINLK-LFSSLKYLLLLDLSGGWISQASLSLDSYIPSTLEALL----LKHCNISVF 407

Query:   394 PNFLENQNHLVILNLSDNRI 413
             PN L+   +L  + LS N+I
Sbjct:   408 PNILKTLPNLEFIALSTNKI 427

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2085537 RLP34 "AT3G11010" [Arabidopsis thaliana (taxid:3702)]

 Score = 312 (114.9 bits), Expect = 9.0e-27, P = 9.0e-27
 Identities = 101/331 (30%), Positives = 154/331 (46%)

Query:    29 DCYSWDVVHCNKNTGHVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPP 88
             DC +W+ V CN  +G VI+LNLS   L G  +S+SS+  L  L  L+ + NDF   +I  
Sbjct:    18 DCCNWEGVTCNAKSGEVIELNLSCSSLHGRFHSNSSIRNLHFLTTLDRSHNDFEG-QITS 76

Query:    89 EIINLSRLELQKPSFENLFEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQ 148
              I NLS L     S+     ++ N    ++G++S  +++  +    S     S+ N    
Sbjct:    77 SIENLSHLTSLDLSYNRFSGQILN----SIGNLSRLTSLDLSFNQFSGQIPSSIGNLSHL 132

Query:   149 AMCSFFLIQISGRIPXXXXXXXXXXXXXXXXXXXQGEAASFRCFGELPISMGNLGSLKEL 208
                     +  G+IP                    G + + R FG+ P S+G L +L  L
Sbjct:   133 TFLGLSGNRFFGQIPSSIGNLSHLTFL--------GLSGN-RFFGQFPSSIGGLSNLTNL 183

Query:   209 DLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVP 268
              LS N + G++P+SI NL  L  L LS N   GE P S GN + L  L++         P
Sbjct:   184 HLSYNKYSGQIPSSIGNLSQLIVLYLSVNNFYGEIPSSFGNLNQLTRLDVSFNKLGGNFP 243

Query:   269 HSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVL 328
             + + N T L  + L  N F+G L  +I +L +L   Y +   F+G   S L  +  L  L
Sbjct:   244 NVLLNLTGLSVVSLSNNKFTGTLPPNITSLSNLMAFYASDNAFTGTFPSFLFIIPSLTYL 303

Query:   329 DMAQNSYGGTVELDVLLTSWKNLEALDISLN 359
              ++ N   GT+E   + +S  NL+ L+I  N
Sbjct:   304 GLSGNQLKGTLEFGNI-SSPSNLQYLNIGSN 333

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00029123001 SubName- Full=Chromosome chr12 scaffold_47, whole genome shotgun sequence; (983 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	413
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-31
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-30
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-26
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	8e-23
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-19
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	8e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	4e-05
PLN03210	1153	PLN03210, PLN03210, Resistant to P	5e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-04
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	0.002

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  126 bits (317), Expect = 3e-31
 Identities = 115/365 (31%), Positives = 174/365 (47%), Gaps = 59/365 (16%)

Query: 18  MASWKPEEGSVDCYSWDVVHCNKNTGHVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLA 77
           +++W     S D   W  + CN N+  V+ ++LS   + G I  SS++F+L +++ +NL+
Sbjct: 48  LSNWNS---SADVCLWQGITCN-NSSRVVSIDLSGKNISGKI--SSAIFRLPYIQTINLS 101

Query: 78  LNDFNSSEIPPEI---------INLSRLELQKP---SFENLFEKL--------------- 110
            N   S  IP +I         +NLS                E L               
Sbjct: 102 NNQL-SGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDI 160

Query: 111 ---SNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRN--------CELQAMCSFFLI--- 156
              S+LK L+LG   +   IP+++ NL+SL F++L +         EL  M S   I   
Sbjct: 161 GSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLG 220

Query: 157 --QISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNG 214
              +SG IP  +G L+ L HLDL  N L G          +P S+GNL +L+ L L QN 
Sbjct: 221 YNNLSGEIPYEIGGLTSLNHLDLVYNNLTGP---------IPSSLGNLKNLQYLFLYQNK 271

Query: 215 FFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNF 274
             G +P SI +L  L  LDLS N LSGE P       +L++L+L S  F  K+P ++ + 
Sbjct: 272 LSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSL 331

Query: 275 TRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNS 334
            RLQ L L  N FSG++  ++G   +L V+ ++  N +G+I   L +   L  L +  NS
Sbjct: 332 PRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNS 391

Query: 335 YGGTV 339
             G +
Sbjct: 392 LEGEI 396

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  122 bits (307), Expect = 6e-30
 Identities = 100/305 (32%), Positives = 155/305 (50%), Gaps = 31/305 (10%)

Query: 109 KLSNLKTLNLGDVSIDSTIPHNIKNLS-SLTFVSLRNCELQAMCSFFLIQISGRIPSSLG 167
           +L  ++T+NL +  +   IP +I   S SL +++L N              +G IP   G
Sbjct: 91  RLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNF-----------TGSIPR--G 137

Query: 168 NLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLF 227
           ++  L  LDLS N L GE         +P  +G+  SLK LDL  N   G++P S+ NL 
Sbjct: 138 SIPNLETLDLSNNMLSGE---------IPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLT 188

Query: 228 SLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNF 287
           SLE L L+ N+L G+ P   G   SLK + L       ++P+ IG  T L  L L +NN 
Sbjct: 189 SLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNL 248

Query: 288 SGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTS 347
           +G +  S+GNL++L+ +++ +   SG I  S+ +L +L+ LD++ NS  G  E+  L+  
Sbjct: 249 TGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSG--EIPELVIQ 306

Query: 348 WKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLT-KFPNFLENQNHLVIL 406
            +NLE L +  N     T     A   T+  ++Q   L S   + + P  L   N+L +L
Sbjct: 307 LQNLEILHLFSNN---FTGKIPVAL--TSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVL 361

Query: 407 NLSDN 411
           +LS N
Sbjct: 362 DLSTN 366

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  110 bits (277), Expect = 4e-26
 Identities = 118/401 (29%), Positives = 182/401 (45%), Gaps = 45/401 (11%)

Query: 48  LNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENL- 106
           L+LS+  L G I +    F    LK L+L  N     +IP  + NL+ LE    +   L 
Sbjct: 145 LDLSNNMLSGEIPNDIGSFS--SLKVLDLGGN-VLVGKIPNSLTNLTSLEFLTLASNQLV 201

Query: 107 ------FEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSL--RNCELQAMCSF----- 153
                   ++ +LK + LG  ++   IP+ I  L+SL  + L   N       S      
Sbjct: 202 GQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKN 261

Query: 154 ----FLIQ--ISGRIPSSLGNLSKLLHLDLSLNELQGEAA---------------SFRCF 192
               FL Q  +SG IP S+ +L KL+ LDLS N L GE                 S    
Sbjct: 262 LQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFT 321

Query: 193 GELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSS 252
           G++P+++ +L  L+ L L  N F GE+P ++    +L  LDLS N L+GE P    +  +
Sbjct: 322 GKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGN 381

Query: 253 LKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFS 312
           L  L L S     ++P S+G    L+ + L  N+FSG+L      L  +  + I+  N  
Sbjct: 382 LFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQ 441

Query: 313 GQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTKATFDAT 372
           G+I S   ++  L +L +A+N + G   L     S K LE LD+S N+ S        + 
Sbjct: 442 GRINSRKWDMPSLQMLSLARNKFFG--GLPDSFGS-KRLENLDLSRNQFSGAVPRKLGSL 498

Query: 373 TDTTSQKIQYRGLRSCNLTKFPNFLENQNHLVILNLSDNRI 413
           ++    K+    L      + P+ L +   LV L+LS N++
Sbjct: 499 SELMQLKLSENKLSG----EIPDELSSCKKLVSLDLSHNQL 535

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  100 bits (251), Expect = 8e-23
 Identities = 103/366 (28%), Positives = 163/366 (44%), Gaps = 39/366 (10%)

Query: 67  KLVHLKWLNLALNDFNSSEIPPEIINLSRLE--------LQKPSFENLFEKLSNLKTLNL 118
            L  L  L+L  N+  +  IP  + NL  L+        L  P   ++F  L  L +L+L
Sbjct: 234 GLTSLNHLDLVYNNL-TGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFS-LQKLISLDL 291

Query: 119 GDVSIDSTIPHNIKNLSSLTFVSLRNCEL-----QAMCSFFLIQI--------SGRIPSS 165
            D S+   IP  +  L +L  + L +         A+ S   +Q+        SG IP +
Sbjct: 292 SDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKN 351

Query: 166 LGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRN 225
           LG  + L  LDLS N L GE         +P  + + G+L +L L  N   GE+P S+  
Sbjct: 352 LGKHNNLTVLDLSTNNLTGE---------IPEGLCSSGNLFKLILFSNSLEGEIPKSLGA 402

Query: 226 LFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFN 285
             SL ++ L  N  SGE P        +  L++ +     ++     +   LQ L L  N
Sbjct: 403 CRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARN 462

Query: 286 NFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLL 345
            F G L  S G+ R LE + +++  FSG +   L +L++L+ L +++N   G +  +  L
Sbjct: 463 KFFGGLPDSFGSKR-LENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDE--L 519

Query: 346 TSWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLTKFPNFLENQNHLVI 405
           +S K L +LD+S N+ S    A+F      +   +    L      + P  L N   LV 
Sbjct: 520 SSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSG----EIPKNLGNVESLVQ 575

Query: 406 LNLSDN 411
           +N+S N
Sbjct: 576 VNISHN 581

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 88.8 bits (220), Expect = 7e-19
 Identities = 96/313 (30%), Positives = 136/313 (43%), Gaps = 41/313 (13%)

Query: 64  SLFKLVHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENLFEK-------LSNLKTL 116
           S+F L  L  L+L+ N   S EIP  +I L  LE+      N   K       L  L+ L
Sbjct: 279 SIFSLQKLISLDLSDN-SLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVL 337

Query: 117 NLGDVSIDSTIPHNIKNLSSLTFVSLRNCEL-----QAMCS----FFLIQIS----GRIP 163
            L        IP N+   ++LT + L    L     + +CS    F LI  S    G IP
Sbjct: 338 QLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIP 397

Query: 164 SSLGNLSKLLHLDLSLNELQGEAASFRCFGELP------ISMGNLG-----------SLK 206
            SLG    L  + L  N   GE      F +LP      IS  NL            SL+
Sbjct: 398 KSLGACRSLRRVRLQDNSFSGELP--SEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQ 455

Query: 207 ELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSK 266
            L L++N FFG LP S  +   LE LDLS N+ SG  P   G+ S L  L L       +
Sbjct: 456 MLSLARNKFFGGLPDSFGSK-RLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGE 514

Query: 267 VPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLV 326
           +P  + +  +L  L L  N  SG +  S   +  L  + +++   SG+I  +L N+  LV
Sbjct: 515 IPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLV 574

Query: 327 VLDMAQNSYGGTV 339
            ++++ N   G++
Sbjct: 575 QVNISHNHLHGSL 587

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 68.3 bits (167), Expect = 3e-12
 Identities = 61/203 (30%), Positives = 93/203 (45%), Gaps = 42/203 (20%)

Query: 48  LNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENLF 107
           L++S+  L G INS    + +  L+ L+LA N F    +P                    
Sbjct: 433 LDISNNNLQGRINSRK--WDMPSLQMLSLARNKF-FGGLPD------------------S 471

Query: 108 EKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLG 167
                L+ L+L        +P  + +LS L  + L   +           +SG IP  L 
Sbjct: 472 FGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENK-----------LSGEIPDELS 520

Query: 168 NLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLF 227
           +  KL+ LDLS N+L G+  +   F E+P+       L +LDLSQN   GE+P ++ N+ 
Sbjct: 521 SCKKLVSLDLSHNQLSGQIPA--SFSEMPV-------LSQLDLSQNQLSGEIPKNLGNVE 571

Query: 228 SLEKLDLSFNKLSGEFPWSTGNF 250
           SL ++++S N L G  P STG F
Sbjct: 572 SLVQVNISHNHLHGSLP-STGAF 593

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 63.7 bits (155), Expect = 7e-11
 Identities = 30/80 (37%), Positives = 47/80 (58%)

Query: 193 GELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSS 252
           G +P  +  L  L+ ++LS N   G +P S+ ++ SLE LDLS+N  +G  P S G  +S
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS 491

Query: 253 LKLLNLRSCGFWSKVPHSIG 272
           L++LNL       +VP ++G
Sbjct: 492 LRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 61.8 bits (150), Expect = 3e-10
 Identities = 31/89 (34%), Positives = 48/89 (53%)

Query: 208 LDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKV 267
           L L   G  G +P  I  L  L+ ++LS N + G  P S G+ +SL++L+L    F   +
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 268 PHSIGNFTRLQFLFLGFNNFSGDLLGSIG 296
           P S+G  T L+ L L  N+ SG +  ++G
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 50.6 bits (121), Expect = 8e-07
 Identities = 33/108 (30%), Positives = 50/108 (46%), Gaps = 20/108 (18%)

Query: 116 LNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHL 175
           L L +  +   IP++I  L  L  ++L               I G IP SLG+++ L  L
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGN-----------SIRGNIPPSLGSITSLEVL 471

Query: 176 DLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSI 223
           DLS N            G +P S+G L SL+ L+L+ N   G +P ++
Sbjct: 472 DLSYNSFN---------GSIPESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 46.7 bits (111), Expect = 2e-05
 Identities = 29/84 (34%), Positives = 47/84 (55%)

Query: 256 LNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQI 315
           L L + G    +P+ I     LQ + L  N+  G++  S+G++ SLEV+ ++  +F+G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 316 TSSLRNLTQLVVLDMAQNSYGGTV 339
             SL  LT L +L++  NS  G V
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRV 506

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 45.3 bits (107), Expect = 4e-05
 Identities = 74/282 (26%), Positives = 121/282 (42%), Gaps = 28/282 (9%)

Query: 79  NDFNSSEIPPEIINLSRLELQKPSFENLFEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLT 138
            +F  S +    + ++RL L   S   L    S  + L     S+D   P  I +L    
Sbjct: 35  LNFPDSNLES--VAVNRLALNLSSNTLLLLPSSLSRLL-----SLDLLSPSGISSLDGSE 87

Query: 139 FVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPIS 198
            +           +   ++ +      L NL+ L   + ++ ++       +        
Sbjct: 88  NLLNLLPLPSLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLK-------- 139

Query: 199 MGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNL 258
                +LKELDLS N     LP+ +RNL +L+ LDLSFN LS + P    N S+L  L+L
Sbjct: 140 ----SNLKELDLSDNKI-ESLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDL 193

Query: 259 RSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSS 318
                 S +P  I   + L+ L L  N+   +LL S+ NL++L  + ++  N    +  S
Sbjct: 194 SGNKI-SDLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELS-NNKLEDLPES 250

Query: 319 LRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNR 360
           + NL+ L  LD++ N       +  L +   NL  LD+S N 
Sbjct: 251 IGNLSNLETLDLSNN---QISSISSLGSL-TNLRELDLSGNS 288

Length = 394

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 45.6 bits (108), Expect = 5e-05
 Identities = 65/249 (26%), Positives = 95/249 (38%), Gaps = 52/249 (20%)

Query: 111 SNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCE----------LQAMCSFFLIQISG 160
           +NL+TL L D S    +P +I+ L+ L  + +  CE          L+++    L   S 
Sbjct: 657 TNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSR 716

Query: 161 --RIPSSLGNLSKL-------------LHLD----LSLNELQGEAASFRCFGELPISMGN 201
               P    N+S L             L L+    L L E++ E    R     P+    
Sbjct: 717 LKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTML 776

Query: 202 LGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTG-NFSSLKLLNLRS 260
             SL  L LS      ELP+SI+NL  LE L++         P  TG N  SL+ L+L  
Sbjct: 777 SPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLP--TGINLESLESLDLSG 834

Query: 261 CGFW--------------------SKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRS 300
           C                        +VP  I  F+ L FL +   N    +  +I  L+ 
Sbjct: 835 CSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKH 894

Query: 301 LEVIYIAKC 309
           LE +  + C
Sbjct: 895 LETVDFSDC 903

syringae 6; Provisional. Length = 1153

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 43.7 bits (103), Expect = 1e-04
 Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 11/83 (13%)

Query: 103 FENLFEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRI 162
             N   KL +L+++NL   SI   IP ++ +++SL  + L                +G I
Sbjct: 434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF-----------NGSI 482

Query: 163 PSSLGNLSKLLHLDLSLNELQGE 185
           P SLG L+ L  L+L+ N L G 
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGR 505

Length = 623

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 40.0 bits (94), Expect = 0.002
 Identities = 68/324 (20%), Positives = 105/324 (32%), Gaps = 67/324 (20%)

Query: 106 LFEKLSNLKTLNLGDVSID----STIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGR 161
           L  KL  L+ L L   ++       +   ++   SL  + L   E   +           
Sbjct: 18  LLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGL-----QS 72

Query: 162 IPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGE-LP 220
           +   L     L  LDLS N L  +         +  S+    SL+EL L+ NG     L 
Sbjct: 73  LLQGLTKGCGLQELDLSDNALGPDGC------GVLESLLRSSSLQELKLNNNGLGDRGLR 126

Query: 221 TSIRNLFS----LEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTR 276
              + L      LEKL L  N+L G                  SC   +K   +      
Sbjct: 127 LLAKGLKDLPPALEKLVLGRNRLEGA-----------------SCEALAKALRANR---D 166

Query: 277 LQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYG 336
           L+ L L  N            +R+L                 L+    L VLD+  N   
Sbjct: 167 LKELNLANNGIGDAG------IRALAEG--------------LKANCNLEVLDLNNNGLT 206

Query: 337 --GTVELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLT--- 391
             G   L   L S K+LE L++  N  +    A   +   + +  +    L   ++T   
Sbjct: 207 DEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDG 266

Query: 392 --KFPNFLENQNHLVILNLSDNRI 413
                  L  +  L+ L+L  N+ 
Sbjct: 267 AKDLAEVLAEKESLLELDLRGNKF 290

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	413
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.97
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.96
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.94
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.93
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.88
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.87
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.87
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.84
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.84
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.82
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.8
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.75
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.75
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.75
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.74
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.71
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.68
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.66
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.51
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.49
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.44
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.42
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.33
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.19
PLN03150	623	hypothetical protein; Provisional	99.15
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.14
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.09
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.04
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.04
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.03
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.0
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.98
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.97
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.93
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.85
KOG4341	483	consensus F-box protein containing LRR [General fu	98.84
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.81
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.81
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.81
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.75
PLN03150	623	hypothetical protein; Provisional	98.66
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.65
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.64
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.63
KOG4341	483	consensus F-box protein containing LRR [General fu	98.6
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.57
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.56
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.44
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.36
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.34
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.13
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.12
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.05
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.84
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.69
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.68
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.65
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.6
PRK15386	426	type III secretion protein GogB; Provisional	97.58
PRK15386	426	type III secretion protein GogB; Provisional	97.53
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.48
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.33
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.16
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.96
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.83
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.76
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.58
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.15
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	95.8
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.34
KOG4308	478	consensus LRR-containing protein [Function unknown	95.31
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	94.94
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.44
KOG4308	478	consensus LRR-containing protein [Function unknown	93.78
KOG3864	221	consensus Uncharacterized conserved protein [Funct	92.85
KOG3864	221	consensus Uncharacterized conserved protein [Funct	92.76
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	89.4
smart00370	26	LRR Leucine-rich repeats, outliers.	89.4
KOG4242	553	consensus Predicted myosin-I-binding protein [Cell	88.68
KOG3763	585	consensus mRNA export factor TAP/MEX67 [RNA proces	87.58
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	84.92
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	81.74
KOG0473	326	consensus Leucine-rich repeat protein [Function un	80.43

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=5.3e-39  Score=336.24  Aligned_cols=372  Identities=30%  Similarity=0.482  Sum_probs=251.7

Q ss_pred             cCCCCCCCCCCCCCCCCCcccceEEeeCCCCceEEEecCCCccccccCCccccccccccceeeccccCCCCCCCCc----
Q 048333           13 DCRPTMASWKPEEGSVDCYSWDVVHCNKNTGHVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPP----   88 (413)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~----   88 (413)
                      |+....++|++   ..+||.|.|+.|.. .++++.|+++++.+.+..+.  .+..+++|+.|++++|++.+. +|.    
T Consensus        43 ~~~~~~~~w~~---~~~~c~w~gv~c~~-~~~v~~L~L~~~~i~~~~~~--~~~~l~~L~~L~Ls~n~~~~~-ip~~~~~  115 (968)
T PLN00113         43 DPLKYLSNWNS---SADVCLWQGITCNN-SSRVVSIDLSGKNISGKISS--AIFRLPYIQTINLSNNQLSGP-IPDDIFT  115 (968)
T ss_pred             CCcccCCCCCC---CCCCCcCcceecCC-CCcEEEEEecCCCccccCCh--HHhCCCCCCEEECCCCccCCc-CChHHhc
Confidence            45566789986   78999999999974 57999999999998887766  889999999999999988764 554    


Q ss_pred             cccCcCccccCCcchhhh--hhcCCCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccc
Q 048333           89 EIINLSRLELQKPSFENL--FEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSL  166 (413)
Q Consensus        89 ~~~~L~~L~l~~~~i~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l  166 (413)
                      .+.+|+.|++.++.+...  ...+++|++|++++|.+.+.+|..+..+++|++|++++|.+.           +.+|..+
T Consensus       116 ~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~-----------~~~p~~~  184 (968)
T PLN00113        116 TSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLV-----------GKIPNSL  184 (968)
T ss_pred             cCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCccc-----------ccCChhh
Confidence            455777778876666433  235788888888888887777888888888888888888776           4566677


Q ss_pred             cCCCCccEEECCCCccccccccccccccccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcc
Q 048333          167 GNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWS  246 (413)
Q Consensus       167 ~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~  246 (413)
                      .++++|++|++++|.+...         +|..+.++++|+.|++++|.+...+|..+..+++|++|++++|.+.+..|..
T Consensus       185 ~~l~~L~~L~L~~n~l~~~---------~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~  255 (968)
T PLN00113        185 TNLTSLEFLTLASNQLVGQ---------IPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS  255 (968)
T ss_pred             hhCcCCCeeeccCCCCcCc---------CChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChh
Confidence            7777777777777776543         4555666666666666666665556666666666666666666655555555


Q ss_pred             cCCCCCCcEEEecCCccccccchhhccCCCCCeEecCCcccCCcccccccCCCCCcEEEccCCcccccccccccCCCCCC
Q 048333          247 TGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLV  326 (413)
Q Consensus       247 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~  326 (413)
                      +..+++|++|++++|.+.+..|..+..+++|++|++++|.+....+..+..+++|+.|++++|.+++..|..+..+++|+
T Consensus       256 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~  335 (968)
T PLN00113        256 LGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQ  335 (968)
T ss_pred             HhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCC
Confidence            66666666666666665555555555666666666666655555555555556666666666665555555555566666


Q ss_pred             EEECCCCcCcceechhHhhhcccCCCeeeccCccccccce------------------eeecccccc-ccccceeeeccC
Q 048333          327 VLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTK------------------ATFDATTDT-TSQKIQYRGLRS  387 (413)
Q Consensus       327 ~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~------------------~~~~~~~~~-~~~~L~~L~l~~  387 (413)
                      .|++++|.+.+..+ . .+..+++|+.|++++|.+...-+                  .....+..+ .+++|+.|++++
T Consensus       336 ~L~L~~n~l~~~~p-~-~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~  413 (968)
T PLN00113        336 VLQLWSNKFSGEIP-K-NLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQD  413 (968)
T ss_pred             EEECcCCCCcCcCC-h-HHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcC
Confidence            66666665554443 2 34455555555555555321100                  222233333 567788888888


Q ss_pred             CCCC-CcchHhhcCCCCcEEeCCCCCC
Q 048333          388 CNLT-KFPNFLENQNHLVILNLSDNRI  413 (413)
Q Consensus       388 ~~l~-~l~~~~~~l~~L~~L~l~~n~i  413 (413)
                      |.++ .+|..+..+++|+.|++++|++
T Consensus       414 n~l~~~~p~~~~~l~~L~~L~Ls~N~l  440 (968)
T PLN00113        414 NSFSGELPSEFTKLPLVYFLDISNNNL  440 (968)
T ss_pred             CEeeeECChhHhcCCCCCEEECcCCcc
Confidence            8877 6777788888888888888764

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=6.6e-35  Score=305.44  Aligned_cols=342  Identities=31%  Similarity=0.455  Sum_probs=231.1

Q ss_pred             CCCceEEEecCCCccccccCCccccc-cccccceeeccccCCCCCCCC-ccccCcCccccCCcc----hhhhhhcCCCCc
Q 048333           41 NTGHVIKLNLSHGCLFGSINSSSSLF-KLVHLKWLNLALNDFNSSEIP-PEIINLSRLELQKPS----FENLFEKLSNLK  114 (413)
Q Consensus        41 ~~~~l~~L~l~~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~----i~~~~~~~~~L~  114 (413)
                      ..++++.|++++|.+.+.++.  .+. .+++|++|++++|.+.+. +| ..+.+|+.|++.++.    ++..++.+++|+
T Consensus        91 ~l~~L~~L~Ls~n~~~~~ip~--~~~~~l~~L~~L~Ls~n~l~~~-~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~  167 (968)
T PLN00113         91 RLPYIQTINLSNNQLSGPIPD--DIFTTSSSLRYLNLSNNNFTGS-IPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLK  167 (968)
T ss_pred             CCCCCCEEECCCCccCCcCCh--HHhccCCCCCEEECcCCccccc-cCccccCCCCEEECcCCcccccCChHHhcCCCCC
Confidence            456899999999998877765  444 899999999999988765 44 357788888887554    456688899999


Q ss_pred             EEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCcccccccccccccc
Q 048333          115 TLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGE  194 (413)
Q Consensus       115 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~  194 (413)
                      +|++++|.+.+.+|..+.++++|++|++++|.+.           +.+|..+.++++|+.|++++|.+.+.         
T Consensus       168 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~-----------~~~p~~l~~l~~L~~L~L~~n~l~~~---------  227 (968)
T PLN00113        168 VLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLV-----------GQIPRELGQMKSLKWIYLGYNNLSGE---------  227 (968)
T ss_pred             EEECccCcccccCChhhhhCcCCCeeeccCCCCc-----------CcCChHHcCcCCccEEECcCCccCCc---------
Confidence            9999999888788888889999999999998876           45666677777777777777766543         


Q ss_pred             ccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccC
Q 048333          195 LPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNF  274 (413)
Q Consensus       195 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~  274 (413)
                      +|..+..+++|++|++++|.+...+|..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+..+
T Consensus       228 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l  307 (968)
T PLN00113        228 IPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQL  307 (968)
T ss_pred             CChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCC
Confidence            44455555555666665555554555555555555555555555544445555555555555555555544455555555


Q ss_pred             CCCCeEecCCcccCCcccccccCCCCCcEEEccCCcccccccccccCCCC------------------------CCEEEC
Q 048333          275 TRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQ------------------------LVVLDM  330 (413)
Q Consensus       275 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~------------------------L~~L~l  330 (413)
                      ++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..|..+..+++                        |+.|++
T Consensus       308 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l  387 (968)
T PLN00113        308 QNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLIL  387 (968)
T ss_pred             CCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEEC
Confidence            55555555555554444444444555555555555554444444444444                        445555


Q ss_pred             CCCcCcceechhHhhhcccCCCeeeccCccccccceeeecccccc-ccccceeeeccCCCCC-CcchHhhcCCCCcEEeC
Q 048333          331 AQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDT-TSQKIQYRGLRSCNLT-KFPNFLENQNHLVILNL  408 (413)
Q Consensus       331 ~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~-~~~~L~~L~l~~~~l~-~l~~~~~~l~~L~~L~l  408 (413)
                      ++|.+.+..+ . .+..+++|+.|++++|.      ..+..+... .+++|+.|++++|.++ .+|..+..+++|+.|++
T Consensus       388 ~~n~l~~~~p-~-~~~~~~~L~~L~L~~n~------l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  459 (968)
T PLN00113        388 FSNSLEGEIP-K-SLGACRSLRRVRLQDNS------FSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSL  459 (968)
T ss_pred             cCCEecccCC-H-HHhCCCCCCEEECcCCE------eeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEEC
Confidence            5544443333 2 45667778888888887      344444444 7889999999999999 67777889999999999


Q ss_pred             CCCCC
Q 048333          409 SDNRI  413 (413)
Q Consensus       409 ~~n~i  413 (413)
                      ++|++
T Consensus       460 ~~n~~  464 (968)
T PLN00113        460 ARNKF  464 (968)
T ss_pred             cCcee
Confidence            99974

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.97  E-value=7.8e-33  Score=251.65  Aligned_cols=344  Identities=22%  Similarity=0.212  Sum_probs=285.8

Q ss_pred             CceEEEecCCCccccccCCccccccccccceeeccccCCCCCC-CCccccCcCccccCCcchhhh----hhcCCCCcEEE
Q 048333           43 GHVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSE-IPPEIINLSRLELQKPSFENL----FEKLSNLKTLN  117 (413)
Q Consensus        43 ~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~~~i~~~----~~~~~~L~~L~  117 (413)
                      ...+.|++++|.+....+.  .|.++++|+.+++..|.++.+- .....++++.|.+.+|.|+.+    ++.++.|+.||
T Consensus        78 ~~t~~LdlsnNkl~~id~~--~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslD  155 (873)
T KOG4194|consen   78 SQTQTLDLSNNKLSHIDFE--FFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLD  155 (873)
T ss_pred             cceeeeeccccccccCcHH--HHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhh
Confidence            4567899999998877666  7899999999999999887521 223456788899998888754    77899999999


Q ss_pred             cCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCccccccccccccccccc
Q 048333          118 LGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPI  197 (413)
Q Consensus       118 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~  197 (413)
                      ++.|.+....-..|..-.++++|++++|.++++           -...|.++.+|..|.++.|+++..         -+.
T Consensus       156 LSrN~is~i~~~sfp~~~ni~~L~La~N~It~l-----------~~~~F~~lnsL~tlkLsrNrittL---------p~r  215 (873)
T KOG4194|consen  156 LSRNLISEIPKPSFPAKVNIKKLNLASNRITTL-----------ETGHFDSLNSLLTLKLSRNRITTL---------PQR  215 (873)
T ss_pred             hhhchhhcccCCCCCCCCCceEEeecccccccc-----------ccccccccchheeeecccCccccc---------CHH
Confidence            999998754444566668899999999999854           345677888999999999999864         235


Q ss_pred             cccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccCCCC
Q 048333          198 SMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRL  277 (413)
Q Consensus       198 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L  277 (413)
                      .|.++++|+.|++..|.+...-...|..+++|+.|.+..|.+...-...|..+.++++|++..|++......++.++..|
T Consensus       216 ~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L  295 (873)
T KOG4194|consen  216 SFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSL  295 (873)
T ss_pred             HhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchh
Confidence            67889999999999998853324568899999999999999987777888899999999999999977777889999999


Q ss_pred             CeEecCCcccCCcccccccCCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcceechhHhhhcccCCCeeecc
Q 048333          278 QFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDIS  357 (413)
Q Consensus       278 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~  357 (413)
                      +.|++++|.+...-+.....+++|++|+|+.|+++...+..|..+..|++|++++|.++...  ...|.++++|++||++
T Consensus       296 ~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~--e~af~~lssL~~LdLr  373 (873)
T KOG4194|consen  296 EQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLA--EGAFVGLSSLHKLDLR  373 (873)
T ss_pred             hhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHH--hhHHHHhhhhhhhcCc
Confidence            99999999998877888888999999999999999777888899999999999999997433  3478999999999999


Q ss_pred             Cccccccceeeecccccc-ccccceeeeccCCCCCCcc-hHhhcCCCCcEEeCCCCCC
Q 048333          358 LNRSSVLTKATFDATTDT-TSQKIQYRGLRSCNLTKFP-NFLENQNHLVILNLSDNRI  413 (413)
Q Consensus       358 ~~~i~~l~~~~~~~~~~~-~~~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~l~~n~i  413 (413)
                      .|.++-.   ..+..... .+++|+.|.+.+|++..+| ..|.++++|++|||.+|.|
T Consensus       374 ~N~ls~~---IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~Nai  428 (873)
T KOG4194|consen  374 SNELSWC---IEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAI  428 (873)
T ss_pred             CCeEEEE---EecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcc
Confidence            9995431   11112222 7899999999999999888 5689999999999999986

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.96  E-value=1.1e-30  Score=237.67  Aligned_cols=339  Identities=23%  Similarity=0.225  Sum_probs=233.8

Q ss_pred             CCCceEEEecCCCccccccCCccccccccccceeeccccCCCCCC--CCccccCcCccccCCcchhhh----hhcCCCCc
Q 048333           41 NTGHVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSE--IPPEIINLSRLELQKPSFENL----FEKLSNLK  114 (413)
Q Consensus        41 ~~~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~i~~~----~~~~~~L~  114 (413)
                      +.++++.+++..|.++ .+|.  .....-+|++|++.+|.++...  -...+..++.|+++.|.|...    |..-.+++
T Consensus       100 nl~nLq~v~l~~N~Lt-~IP~--f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~  176 (873)
T KOG4194|consen  100 NLPNLQEVNLNKNELT-RIPR--FGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIK  176 (873)
T ss_pred             cCCcceeeeeccchhh-hccc--ccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCce
Confidence            5567777777777664 2333  2333445777777777666541  112344566666665555443    44446788


Q ss_pred             EEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCcccccccccccccc
Q 048333          115 TLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGE  194 (413)
Q Consensus       115 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~  194 (413)
                      +|++++|+++..-...|..+.+|.+|.+++|.++.+|           +..|.++++|+.|++..|+|....        
T Consensus       177 ~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp-----------~r~Fk~L~~L~~LdLnrN~irive--------  237 (873)
T KOG4194|consen  177 KLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLP-----------QRSFKRLPKLESLDLNRNRIRIVE--------  237 (873)
T ss_pred             EEeeccccccccccccccccchheeeecccCcccccC-----------HHHhhhcchhhhhhccccceeeeh--------
Confidence            8888888887666667777888888888888887432           245667888888888888776431        


Q ss_pred             ccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccC
Q 048333          195 LPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNF  274 (413)
Q Consensus       195 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~  274 (413)
                       -..|.+++.|+.|.+..|.+......+|..+.++++|++..|.+...-..++..+..|+.|++++|.+....+..+..+
T Consensus       238 -~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsft  316 (873)
T KOG4194|consen  238 -GLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFT  316 (873)
T ss_pred             -hhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhc
Confidence             2356777888888888888776666677788888888888888776667777778888888888887766667777777


Q ss_pred             CCCCeEecCCcccCCcccccccCCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcceec-hhHhhhcccCCCe
Q 048333          275 TRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVE-LDVLLTSWKNLEA  353 (413)
Q Consensus       275 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~~~L~~  353 (413)
                      ++|+.|+++.|.+++.....|..+..|++|+|+.|.+...-...|..+.+|+.||++.|.+...+. -...+.+++.|++
T Consensus       317 qkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~Lrk  396 (873)
T KOG4194|consen  317 QKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRK  396 (873)
T ss_pred             ccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhh
Confidence            888888888888877667777777888888888888765455567777888888888887763322 1336777888888


Q ss_pred             eeccCccccccceeeeccccccccccceeeeccCCCCCCc-chHhhcCCCCcEEeC
Q 048333          354 LDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLTKF-PNFLENQNHLVILNL  408 (413)
Q Consensus       354 L~l~~~~i~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l  408 (413)
                      |.+.||+++.++...+.     .++.|++|++.+|.|..+ |..|..+ .|+.|-+
T Consensus       397 L~l~gNqlk~I~krAfs-----gl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~  446 (873)
T KOG4194|consen  397 LRLTGNQLKSIPKRAFS-----GLEALEHLDLGDNAIASIQPNAFEPM-ELKELVM  446 (873)
T ss_pred             eeecCceeeecchhhhc-----cCcccceecCCCCcceeecccccccc-hhhhhhh
Confidence            88888887766554443     456788888888877633 4555555 5555544

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.94  E-value=9.2e-29  Score=227.17  Aligned_cols=340  Identities=22%  Similarity=0.310  Sum_probs=192.7

Q ss_pred             CCceEEEecCCCcccc-ccCCccccccccccceeeccccCCCCCCCCccccCcC---ccccCCcchhhh---hhcCCCCc
Q 048333           42 TGHVIKLNLSHGCLFG-SINSSSSLFKLVHLKWLNLALNDFNSSEIPPEIINLS---RLELQKPSFENL---FEKLSNLK  114 (413)
Q Consensus        42 ~~~l~~L~l~~~~~~~-~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~---~L~l~~~~i~~~---~~~~~~L~  114 (413)
                      .+-|+-+++++|++++ ..|.  ...++..++.|.+...++.  .+|++++.|+   +|+++.+.+...   +..+|.|+
T Consensus         6 LpFVrGvDfsgNDFsg~~FP~--~v~qMt~~~WLkLnrt~L~--~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LR   81 (1255)
T KOG0444|consen    6 LPFVRGVDFSGNDFSGDRFPH--DVEQMTQMTWLKLNRTKLE--QVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLR   81 (1255)
T ss_pred             cceeecccccCCcCCCCcCch--hHHHhhheeEEEechhhhh--hChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhH
Confidence            3456777888887774 4554  6677777887777766554  2666655444   445556665554   44567777


Q ss_pred             EEEcCCccCCC-CcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCccccccccccccc
Q 048333          115 TLNLGDVSIDS-TIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFG  193 (413)
Q Consensus       115 ~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~  193 (413)
                      .+.++.|++.. .+|..+..+..|++|++++|++.            ..|..+...+++-.|++++|+|.....      
T Consensus        82 sv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~------------EvP~~LE~AKn~iVLNLS~N~IetIPn------  143 (1255)
T KOG0444|consen   82 SVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR------------EVPTNLEYAKNSIVLNLSYNNIETIPN------  143 (1255)
T ss_pred             HHhhhccccccCCCCchhcccccceeeecchhhhh------------hcchhhhhhcCcEEEEcccCccccCCc------
Confidence            77787777642 45666777788888888888775            566777777777777777777764322      


Q ss_pred             cccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCcc-ccccchhhc
Q 048333          194 ELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGF-WSKVPHSIG  272 (413)
Q Consensus       194 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~~~~~~~~  272 (413)
                         .-+.+++.|-.|++++|.+. .+|.....+..|++|.+++|++...--..+..+++|++|.+++..- ...+|..+.
T Consensus       144 ---~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld  219 (1255)
T KOG0444|consen  144 ---SLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLD  219 (1255)
T ss_pred             ---hHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchh
Confidence               12345555556666666654 4555555556666666666655322222233444555555555432 233444455


Q ss_pred             cCCCCCeEecCCcccCCcccccccCCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcceechhHhhhcccCCC
Q 048333          273 NFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLE  352 (413)
Q Consensus       273 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~  352 (413)
                      .+.+|..++++.|.+. ..|..+-.+++|+.|+|++|.++ +.......-.+|++|+++.|.++. .+ + ++..++.|+
T Consensus       220 ~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt~-LP-~-avcKL~kL~  294 (1255)
T KOG0444|consen  220 DLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLTV-LP-D-AVCKLTKLT  294 (1255)
T ss_pred             hhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhcc-ch-H-HHhhhHHHH
Confidence            5555555555555544 34444445555555555555554 222222233445555555555442 12 1 444445555


Q ss_pred             eeeccCccccc--cce----------------eeecccccc-ccccceeeeccCCCCCCcchHhhcCCCCcEEeCCCCC
Q 048333          353 ALDISLNRSSV--LTK----------------ATFDATTDT-TSQKIQYRGLRSCNLTKFPNFLENQNHLVILNLSDNR  412 (413)
Q Consensus       353 ~L~l~~~~i~~--l~~----------------~~~~~~~~~-~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~  412 (413)
                      .|.+.+|++.-  ++.                ...-+|..+ .|..|+.|.++.|++..+|..+.-++.|+.||+..|+
T Consensus       295 kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNp  373 (1255)
T KOG0444|consen  295 KLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENP  373 (1255)
T ss_pred             HHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCc
Confidence            55555544210  000                011122223 5677777777777777777777777777777777664

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.93  E-value=4.1e-28  Score=222.92  Aligned_cols=316  Identities=24%  Similarity=0.331  Sum_probs=244.6

Q ss_pred             cccccccceeeccccCCCCCCCCccc---cCcCccccCC---cchhhhhhcCCCCcEEEcCCccCCCCcCccccCCCCCc
Q 048333           65 LFKLVHLKWLNLALNDFNSSEIPPEI---INLSRLELQK---PSFENLFEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLT  138 (413)
Q Consensus        65 ~~~l~~L~~L~l~~~~~~~~~~~~~~---~~L~~L~l~~---~~i~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  138 (413)
                      .+.+|-++-+|+++|++++...|..+   .+++-|+++.   ..+|+-++.+.+|++|.++.|++.. +-..++.++.|+
T Consensus         3 tgVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~-vhGELs~Lp~LR   81 (1255)
T KOG0444|consen    3 TGVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLIS-VHGELSDLPRLR   81 (1255)
T ss_pred             ccccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHh-hhhhhccchhhH
Confidence            45678889999999999987788654   4555566664   4556778888888999888888763 344567788888


Q ss_pred             EEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCccccccccccccccccccccCCCCccEEeCCCCcCCCc
Q 048333          139 FVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGE  218 (413)
Q Consensus       139 ~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~  218 (413)
                      .+.++.|++..          ..+|..+..+..|..|++++|++.          +.|..+...+++-.|++++|.+. .
T Consensus        82 sv~~R~N~LKn----------sGiP~diF~l~dLt~lDLShNqL~----------EvP~~LE~AKn~iVLNLS~N~Ie-t  140 (1255)
T KOG0444|consen   82 SVIVRDNNLKN----------SGIPTDIFRLKDLTILDLSHNQLR----------EVPTNLEYAKNSIVLNLSYNNIE-T  140 (1255)
T ss_pred             HHhhhcccccc----------CCCCchhcccccceeeecchhhhh----------hcchhhhhhcCcEEEEcccCccc-c
Confidence            88888888765          467888888888999999999887          46778888888888999988886 4


Q ss_pred             ch-hhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccCCCCCeEecCCcccC-Cccccccc
Q 048333          219 LP-TSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFS-GDLLGSIG  296 (413)
Q Consensus       219 ~~-~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~l~  296 (413)
                      +| ..+.++..|-.|++++|.+. .+|..+..+.+|++|.+++|.+.-.....+..+.+|+.|.++++.-+ +.+|..+.
T Consensus       141 IPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld  219 (1255)
T KOG0444|consen  141 IPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLD  219 (1255)
T ss_pred             CCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchh
Confidence            55 44567778888889888886 57777888888999999888774444445666777888888887432 35677777


Q ss_pred             CCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcceechhHhhhcccCCCeeeccCccccccceeeeccccccc
Q 048333          297 NLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDTT  376 (413)
Q Consensus       297 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~  376 (413)
                      .+.+|..++++.|.+. .+|+.+..+++|+.|++++|.++....   ....+.+|++|++|.|+++.++....      .
T Consensus       220 ~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~~---~~~~W~~lEtLNlSrNQLt~LP~avc------K  289 (1255)
T KOG0444|consen  220 DLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITELNM---TEGEWENLETLNLSRNQLTVLPDAVC------K  289 (1255)
T ss_pred             hhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceeeeec---cHHHHhhhhhhccccchhccchHHHh------h
Confidence            8888999999888886 788888889999999999998874333   44566788999999998655544333      5


Q ss_pred             cccceeeeccCCCCC--CcchHhhcCCCCcEEeCCCCCC
Q 048333          377 SQKIQYRGLRSCNLT--KFPNFLENQNHLVILNLSDNRI  413 (413)
Q Consensus       377 ~~~L~~L~l~~~~l~--~l~~~~~~l~~L~~L~l~~n~i  413 (413)
                      +++|+.|.+.+|+++  .+|..++++-+|+.+...+|.+
T Consensus       290 L~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~L  328 (1255)
T KOG0444|consen  290 LTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKL  328 (1255)
T ss_pred             hHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcccc
Confidence            677999999999887  8999999999998888887753

>PLN03210 Resistant to P

Probab=99.88  E-value=2.3e-21  Score=204.18  Aligned_cols=330  Identities=22%  Similarity=0.241  Sum_probs=165.9

Q ss_pred             CCceEEEecCCCccccccCCccccccccccceeeccccCCCC-----CCCCcccc----CcCccccCC---cchhhhhhc
Q 048333           42 TGHVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNS-----SEIPPEII----NLSRLELQK---PSFENLFEK  109 (413)
Q Consensus        42 ~~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-----~~~~~~~~----~L~~L~l~~---~~i~~~~~~  109 (413)
                      ..+++.+.+....+........+|..+++|+.|.+..+.+..     ..+|..+.    +|+.|.+..   ..+|..+ .
T Consensus       531 ~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~  609 (1153)
T PLN03210        531 TKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-R  609 (1153)
T ss_pred             cceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-C
Confidence            345666666544443332333367888888888886653221     01333222    344444443   2333333 3


Q ss_pred             CCCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCccccccccc
Q 048333          110 LSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASF  189 (413)
Q Consensus       110 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~  189 (413)
                      +.+|++|+++++.+. .++..+..+++|++|+++++...           ..+| .+..+++|+.|++++|....     
T Consensus       610 ~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l-----------~~ip-~ls~l~~Le~L~L~~c~~L~-----  671 (1153)
T PLN03210        610 PENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNL-----------KEIP-DLSMATNLETLKLSDCSSLV-----  671 (1153)
T ss_pred             ccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCc-----------CcCC-ccccCCcccEEEecCCCCcc-----
Confidence            467777777777665 45555666777777777765432           2333 25566777777777664321     


Q ss_pred             cccccccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccch
Q 048333          190 RCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPH  269 (413)
Q Consensus       190 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~  269 (413)
                          .+|..+..+++|+.|++++|.....+|... .+++|+.|++++|.....+|..   ..+|+.|++.++.+ ..+|.
T Consensus       672 ----~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i-~~lP~  742 (1153)
T PLN03210        672 ----ELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAI-EEFPS  742 (1153)
T ss_pred             ----ccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCcc-ccccc
Confidence                355666667777777777665444555433 5666777777666543333322   24566666666654 33333


Q ss_pred             hhccCCCCCeEecCCcccCC-------cccccccCCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcceechh
Q 048333          270 SIGNFTRLQFLFLGFNNFSG-------DLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELD  342 (413)
Q Consensus       270 ~~~~~~~L~~L~l~~~~~~~-------~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~  342 (413)
                      .+ .+++|+.|.+..+....       ..+......++|+.|++++|.....+|..+..+++|+.|++++|.....++. 
T Consensus       743 ~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~-  820 (1153)
T PLN03210        743 NL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPT-  820 (1153)
T ss_pred             cc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCC-
Confidence            22 34444444444322110       0000111234555555555554444555555555555555555543333331 


Q ss_pred             HhhhcccCCCeeeccCccccccceeeeccccccccccceeeeccCCCCCCcchHhhcCCCCcEEeCCCC
Q 048333          343 VLLTSWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLTKFPNFLENQNHLVILNLSDN  411 (413)
Q Consensus       343 ~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n  411 (413)
                        ..++++|++|++++|.      .....+.  ..++|++|++++|.++.+|..+..+++|+.|++++|
T Consensus       821 --~~~L~sL~~L~Ls~c~------~L~~~p~--~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C  879 (1153)
T PLN03210        821 --GINLESLESLDLSGCS------RLRTFPD--ISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGC  879 (1153)
T ss_pred             --CCCccccCEEECCCCC------ccccccc--cccccCEeECCCCCCccChHHHhcCCCCCEEECCCC
Confidence              1144555555555543      1111111  123444444444444444444444444444444443

syringae 6; Provisional

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.87  E-value=3.1e-25  Score=193.96  Aligned_cols=360  Identities=25%  Similarity=0.331  Sum_probs=202.1

Q ss_pred             CCCceEEEecCCCccccccCCccccccccccceeeccccCCCCCCCCccccCcCc---cccCC---cchhhhhhcCCCCc
Q 048333           41 NTGHVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPPEIINLSR---LELQK---PSFENLFEKLSNLK  114 (413)
Q Consensus        41 ~~~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~---L~l~~---~~i~~~~~~~~~L~  114 (413)
                      ....++.+++.++.+. ..++  +++.+..++.++.+.|++..  +|++++++..   |.+..   ..+++.++.+..|+
T Consensus        66 nL~~l~vl~~~~n~l~-~lp~--aig~l~~l~~l~vs~n~ls~--lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~  140 (565)
T KOG0472|consen   66 NLACLTVLNVHDNKLS-QLPA--AIGELEALKSLNVSHNKLSE--LPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLE  140 (565)
T ss_pred             cccceeEEEeccchhh-hCCH--HHHHHHHHHHhhcccchHhh--ccHHHhhhhhhhhhhccccceeecCchHHHHhhhh
Confidence            4456778888887765 3444  67777777777777766552  5555543333   22221   12233344444444


Q ss_pred             EEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhh-----------hcccCCCccccCCCCccEEECCCCccc
Q 048333          115 TLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLI-----------QISGRIPSSLGNLSKLLHLDLSLNELQ  183 (413)
Q Consensus       115 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~-----------~~~~~~~~~l~~~~~L~~L~l~~~~i~  183 (413)
                      .++-.+|++. ..|..+.++.+|..+++.++++..++..-+.           ..-+.+|..++.+.+|..|++..|.+.
T Consensus       141 dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~  219 (565)
T KOG0472|consen  141 DLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIR  219 (565)
T ss_pred             hhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccc
Confidence            4444444443 2333333333333333333333322110000           011345555555555555555555554


Q ss_pred             cccccc-------------ccccccccc-ccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCC
Q 048333          184 GEAASF-------------RCFGELPIS-MGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGN  249 (413)
Q Consensus       184 ~~~~~~-------------~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~  249 (413)
                      ... .|             .....+|.. ...++++..||+..|.+. ..|+.+..+.+|..|++++|.++ .+|..+++
T Consensus       220 ~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgn  296 (565)
T KOG0472|consen  220 FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGN  296 (565)
T ss_pred             cCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCccccc
Confidence            321 11             001123332 336677777888888775 67777777888888888888877 57777887


Q ss_pred             CCCCcEEEecCCccccccchh-----------------------------------------hccCCCCCeEecCCcccC
Q 048333          250 FSSLKLLNLRSCGFWSKVPHS-----------------------------------------IGNFTRLQFLFLGFNNFS  288 (413)
Q Consensus       250 ~~~L~~L~l~~~~~~~~~~~~-----------------------------------------~~~~~~L~~L~l~~~~~~  288 (413)
                      + +|+.|.+.||.+.+.-.+.                                         ...+.+.+.|++++-.++
T Consensus       297 l-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt  375 (565)
T KOG0472|consen  297 L-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT  375 (565)
T ss_pred             c-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc
Confidence            7 7888887777542110000                                         011123344444444443


Q ss_pred             CcccccccC--CCCCcEEEccCCccc-----------------------ccccccccCCCCCCEEECCCCcCcceechhH
Q 048333          289 GDLLGSIGN--LRSLEVIYIAKCNFS-----------------------GQITSSLRNLTQLVVLDMAQNSYGGTVELDV  343 (413)
Q Consensus       289 ~~~~~~l~~--~~~L~~L~L~~~~~~-----------------------~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~  343 (413)
                      ......|..  -.-...+++++|++.                       +.++..+..+++|..|++++|.+. ..|.  
T Consensus       376 ~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~--  452 (565)
T KOG0472|consen  376 LVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPE--  452 (565)
T ss_pred             cCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcch--
Confidence            322222211  112444555555432                       234445566788888888887665 3442  


Q ss_pred             hhhcccCCCeeeccCccccccce----------------eeeccccc-c-ccccceeeeccCCCCCCcchHhhcCCCCcE
Q 048333          344 LLTSWKNLEALDISLNRSSVLTK----------------ATFDATTD-T-TSQKIQYRGLRSCNLTKFPNFLENQNHLVI  405 (413)
Q Consensus       344 ~~~~~~~L~~L~l~~~~i~~l~~----------------~~~~~~~~-~-~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~  405 (413)
                      .+..+-.|+.||++.|.+..++.                ..+.++.. . .+.+|..|++.+|.+..+|..++++.+|++
T Consensus       453 e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~h  532 (565)
T KOG0472|consen  453 EMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRH  532 (565)
T ss_pred             hhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChhhccccceeE
Confidence            45556668888888888766653                12222222 2 688999999999999999999999999999


Q ss_pred             EeCCCCCC
Q 048333          406 LNLSDNRI  413 (413)
Q Consensus       406 L~l~~n~i  413 (413)
                      |+++||+|
T Consensus       533 LeL~gNpf  540 (565)
T KOG0472|consen  533 LELDGNPF  540 (565)
T ss_pred             EEecCCcc
Confidence            99999986

>PLN03210 Resistant to P

Probab=99.87  E-value=1.5e-20  Score=198.19  Aligned_cols=329  Identities=24%  Similarity=0.259  Sum_probs=223.1

Q ss_pred             CCCceEEEecCCCccc------cccCCcccccccc-ccceeeccccCCCCCCCCcc--ccCcCccccCCcchhh---hhh
Q 048333           41 NTGHVIKLNLSHGCLF------GSINSSSSLFKLV-HLKWLNLALNDFNSSEIPPE--IINLSRLELQKPSFEN---LFE  108 (413)
Q Consensus        41 ~~~~l~~L~l~~~~~~------~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~--~~~L~~L~l~~~~i~~---~~~  108 (413)
                      ...+++.|.+..+...      ...+.  .+..+| +|+.|.+.++.+..  +|..  ..+|+.|++..+.+..   .+.
T Consensus       556 ~m~~L~~L~~~~~~~~~~~~~~~~lp~--~~~~lp~~Lr~L~~~~~~l~~--lP~~f~~~~L~~L~L~~s~l~~L~~~~~  631 (1153)
T PLN03210        556 GMRNLLFLKFYTKKWDQKKEVRWHLPE--GFDYLPPKLRLLRWDKYPLRC--MPSNFRPENLVKLQMQGSKLEKLWDGVH  631 (1153)
T ss_pred             cCccccEEEEecccccccccceeecCc--chhhcCcccEEEEecCCCCCC--CCCcCCccCCcEEECcCccccccccccc
Confidence            3456677766544221      12222  455554 58999988876543  4443  3577777777655543   366


Q ss_pred             cCCCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCcccccccc
Q 048333          109 KLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAAS  188 (413)
Q Consensus       109 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~  188 (413)
                      .+++|++|+++++.....+|. +..+++|++|++++|...           ..+|..+.++++|+.|++++|..-.    
T Consensus       632 ~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L-----------~~lp~si~~L~~L~~L~L~~c~~L~----  695 (1153)
T PLN03210        632 SLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSL-----------VELPSSIQYLNKLEDLDMSRCENLE----  695 (1153)
T ss_pred             cCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCc-----------cccchhhhccCCCCEEeCCCCCCcC----
Confidence            789999999988765456665 778899999999998754           4678888999999999999874322    


Q ss_pred             ccccccccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccc----
Q 048333          189 FRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFW----  264 (413)
Q Consensus       189 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~----  264 (413)
                           .+|..+ ++++|+.|++++|.....+|..   ..+|+.|+++++.+. .+|..+ .+++|+.|.+.++...    
T Consensus       696 -----~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~  764 (1153)
T PLN03210        696 -----ILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWE  764 (1153)
T ss_pred             -----ccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccccchhhccc
Confidence                 245444 6788999999998765555542   457889999888875 455544 4677777777654321    


Q ss_pred             ---cccchhhccCCCCCeEecCCcccCCcccccccCCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcceech
Q 048333          265 ---SKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVEL  341 (413)
Q Consensus       265 ---~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~  341 (413)
                         ...+.....+++|+.|++++|......|..++.+++|+.|++.+|...+.+|... .+++|+.|++++|......+ 
T Consensus       765 ~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p-  842 (1153)
T PLN03210        765 RVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFP-  842 (1153)
T ss_pred             cccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccc-
Confidence               1111223345678888888886655677778888888888888876554555544 67888888888876543333 


Q ss_pred             hHhhhcccCCCeeeccCccccccceeeeccccccccccceeeeccCC-CCCCcchHhhcCCCCcEEeCCCCC
Q 048333          342 DVLLTSWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSC-NLTKFPNFLENQNHLVILNLSDNR  412 (413)
Q Consensus       342 ~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~L~~L~l~~~-~l~~l~~~~~~l~~L~~L~l~~n~  412 (413)
                          ....+|+.|++++|.++.++....      .+++|+.|++++| .+..+|..+..+++|+.+++++|.
T Consensus       843 ----~~~~nL~~L~Ls~n~i~~iP~si~------~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        843 ----DISTNISDLNLSRTGIEEVPWWIE------KFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             ----ccccccCEeECCCCCCccChHHHh------cCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence                123578888888887655432211      5677888888886 455777777778888888888774

syringae 6; Provisional

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.84  E-value=1.4e-23  Score=183.61  Aligned_cols=259  Identities=25%  Similarity=0.295  Sum_probs=178.0

Q ss_pred             hhcCCCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCcccccc
Q 048333          107 FEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEA  186 (413)
Q Consensus       107 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~  186 (413)
                      .+.++.+.+||+++|+++ +.|+.+..+.+|++|++++|.++            .+|.+++++ +|+.|.+.||++....
T Consensus       248 ~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is------------~Lp~sLgnl-hL~~L~leGNPlrTiR  313 (565)
T KOG0472|consen  248 LKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS------------SLPYSLGNL-HLKFLALEGNPLRTIR  313 (565)
T ss_pred             hcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc------------cCCcccccc-eeeehhhcCCchHHHH
Confidence            346777788888888776 56777777777888888887776            466777777 8888888887765332


Q ss_pred             ccc----------------------------ccccccc----ccccCCCCccEEeCCCCcCCCcchhhhhCCCC---CCE
Q 048333          187 ASF----------------------------RCFGELP----ISMGNLGSLKELDLSQNGFFGELPTSIRNLFS---LEK  231 (413)
Q Consensus       187 ~~~----------------------------~~~~~~~----~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~---L~~  231 (413)
                      .++                            ...+..+    .....+.+.+.|+++.-.++ .+|+.......   ...
T Consensus       314 r~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~  392 (565)
T KOG0472|consen  314 REIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTS  392 (565)
T ss_pred             HHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEE
Confidence            211                            0000000    11122345566666666654 44443333222   566


Q ss_pred             EEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccCCCCCeEecCCcccCCcccccccCCCCCcEEEccCCcc
Q 048333          232 LDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNF  311 (413)
Q Consensus       232 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~  311 (413)
                      .+++.|++. .+|..+..+..+++..+..++..+..+..++.+++|..|++++|.+. ..|..++.+..|+.++++.|++
T Consensus       393 VnfskNqL~-elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrF  470 (565)
T KOG0472|consen  393 VNFSKNQLC-ELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRF  470 (565)
T ss_pred             EecccchHh-hhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheeccccccc
Confidence            777777765 45655544444433333333344677888888999999999988876 5777888888899999999988


Q ss_pred             cccccccccCCCCCCEEECCCCcCcceechhHhhhcccCCCeeeccCccccccceeeeccccccccccceeeeccCCCCC
Q 048333          312 SGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLT  391 (413)
Q Consensus       312 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~  391 (413)
                      . ..|..+.....++.+-.++|.+....+ . .+.++.+|.+||+.+|.+..+++..+      .+.+|++|++.+|.+.
T Consensus       471 r-~lP~~~y~lq~lEtllas~nqi~~vd~-~-~l~nm~nL~tLDL~nNdlq~IPp~Lg------nmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  471 R-MLPECLYELQTLETLLASNNQIGSVDP-S-GLKNMRNLTTLDLQNNDLQQIPPILG------NMTNLRHLELDGNPFR  541 (565)
T ss_pred             c-cchHHHhhHHHHHHHHhccccccccCh-H-HhhhhhhcceeccCCCchhhCChhhc------cccceeEEEecCCccC
Confidence            6 677777777777888888888875444 4 68899999999999999776666555      6788999999999988

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.84  E-value=3.7e-23  Score=198.27  Aligned_cols=203  Identities=25%  Similarity=0.324  Sum_probs=129.6

Q ss_pred             CccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccCCCCCeEecC
Q 048333          204 SLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLG  283 (413)
Q Consensus       204 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  283 (413)
                      +|+.++++++.+. .+|..+..+.+|+.+...+|.++ .+|..+....+|+.|.+..|.+ ..+|......++|++|++.
T Consensus       242 nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel-~yip~~le~~~sL~tLdL~  318 (1081)
T KOG0618|consen  242 NLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNEL-EYIPPFLEGLKSLRTLDLQ  318 (1081)
T ss_pred             cceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhh-hhCCCcccccceeeeeeeh
Confidence            5666666666664 45566777777888877777764 4555555555555555555554 3444444555556666655


Q ss_pred             CcccCCcccc-----------------------cc--cCCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcce
Q 048333          284 FNNFSGDLLG-----------------------SI--GNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGT  338 (413)
Q Consensus       284 ~~~~~~~~~~-----------------------~l--~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~  338 (413)
                      .|.+......                       ..  ...+.|+.|.+.+|.+++.....+...++|+.|+|++|.+. .
T Consensus       319 ~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~  397 (1081)
T KOG0618|consen  319 SNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-S  397 (1081)
T ss_pred             hccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc-c
Confidence            5554421110                       00  12356777777888888777777778888888888888775 3


Q ss_pred             echhHhhhcccCCCeeeccCcccccccee----------------eeccccccccccceeeeccCCCCC--CcchHhhcC
Q 048333          339 VELDVLLTSWKNLEALDISLNRSSVLTKA----------------TFDATTDTTSQKIQYRGLRSCNLT--KFPNFLENQ  400 (413)
Q Consensus       339 ~~~~~~~~~~~~L~~L~l~~~~i~~l~~~----------------~~~~~~~~~~~~L~~L~l~~~~l~--~l~~~~~~l  400 (413)
                      .+ +..+.+++.|+.|++|||+++.+++-                ....|....++.|+.+|++.|+++  .+|..... 
T Consensus       398 fp-as~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS~N~L~~~~l~~~~p~-  475 (1081)
T KOG0618|consen  398 FP-ASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFPELAQLPQLKVLDLSCNNLSEVTLPEALPS-  475 (1081)
T ss_pred             CC-HHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeechhhhhcCcceEEecccchhhhhhhhhhCCC-
Confidence            44 33777888888888888887776631                122332226778888888888877  44443332 


Q ss_pred             CCCcEEeCCCCC
Q 048333          401 NHLVILNLSDNR  412 (413)
Q Consensus       401 ~~L~~L~l~~n~  412 (413)
                      |+|+.||++||.
T Consensus       476 p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  476 PNLKYLDLSGNT  487 (1081)
T ss_pred             cccceeeccCCc
Confidence            788888888885

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.82  E-value=2.1e-22  Score=193.17  Aligned_cols=335  Identities=23%  Similarity=0.277  Sum_probs=205.7

Q ss_pred             eEEEecCCCccccccCCccccccccccceeeccccCCCCCCCCccccCcCccccCCcchhhhhhcCCCCcEEEcCCccCC
Q 048333           45 VIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENLFEKLSNLKTLNLGDVSID  124 (413)
Q Consensus        45 l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~L~~L~l~~~~~~  124 (413)
                      ++.+++..+.+.+.+..  .+..+.+  .||+.+|.+. ......+.+++.+....+.+....-.-++|+.|+...|.+.
T Consensus       158 ik~~~l~~n~l~~~~~~--~i~~l~~--~ldLr~N~~~-~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~  232 (1081)
T KOG0618|consen  158 IKKLDLRLNVLGGSFLI--DIYNLTH--QLDLRYNEME-VLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLT  232 (1081)
T ss_pred             chhhhhhhhhcccchhc--chhhhhe--eeecccchhh-hhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcce
Confidence            66666666666655555  5555555  5777777665 21223344455444444444444444455666666665554


Q ss_pred             CCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCccccccccc-------------cc
Q 048333          125 STIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASF-------------RC  191 (413)
Q Consensus       125 ~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~-------------~~  191 (413)
                      ...+.  ..-.+|+++++++++++            .+|..++.+++|+.+++.+|.++.....+             .-
T Consensus       233 ~~~~~--p~p~nl~~~dis~n~l~------------~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~ne  298 (1081)
T KOG0618|consen  233 TLDVH--PVPLNLQYLDISHNNLS------------NLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNE  298 (1081)
T ss_pred             eeccc--cccccceeeecchhhhh------------cchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhh
Confidence            21111  11245666666666664            34555666666666666666664321100             00


Q ss_pred             cccccccccCCCCccEEeCCCCcCCCcchh-hhhCCC-CCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccch
Q 048333          192 FGELPISMGNLGSLKELDLSQNGFFGELPT-SIRNLF-SLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPH  269 (413)
Q Consensus       192 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~l~~~~-~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~  269 (413)
                      ...+|......+.|++|++..|.+. ..|+ .+.... +|..+..+.+.+.......=...+.|+.|.+.+|.+++....
T Consensus       299 l~yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p  377 (1081)
T KOG0618|consen  299 LEYIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFP  377 (1081)
T ss_pred             hhhCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchh
Confidence            1134444444555555555555554 2222 222222 144444444443311111111235678888889888777667


Q ss_pred             hhccCCCCCeEecCCcccCCcccccccCCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcceechhHhhhccc
Q 048333          270 SIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWK  349 (413)
Q Consensus       270 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~  349 (413)
                      .+.++++|+.|++++|++.......+.+++.|++|+++||.++ .+|..+..++.|++|...+|.+.. .|   .+..++
T Consensus       378 ~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~~-fP---e~~~l~  452 (1081)
T KOG0618|consen  378 VLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLLS-FP---ELAQLP  452 (1081)
T ss_pred             hhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCceee-ch---hhhhcC
Confidence            7889999999999999998766777888999999999999998 777888899999999999999873 44   577899


Q ss_pred             CCCeeeccCccccccceeeeccccccccccceeeeccCCCCC-CcchHhhcCCCCcEEeCC
Q 048333          350 NLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLT-KFPNFLENQNHLVILNLS  409 (413)
Q Consensus       350 ~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~-~l~~~~~~l~~L~~L~l~  409 (413)
                      +|+.+|++.|.++.+.     .+.....+.|++|++++|.-. .-...+..++++...+++
T Consensus       453 qL~~lDlS~N~L~~~~-----l~~~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~  508 (1081)
T KOG0618|consen  453 QLKVLDLSCNNLSEVT-----LPEALPSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDIT  508 (1081)
T ss_pred             cceEEecccchhhhhh-----hhhhCCCcccceeeccCCcccccchhhhHHhhhhhheecc
Confidence            9999999999975532     111112378999999999744 223445556666666554

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.80  E-value=2.4e-18  Score=169.64  Aligned_cols=236  Identities=22%  Similarity=0.201  Sum_probs=165.0

Q ss_pred             CCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCcccccccccc
Q 048333          111 SNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFR  190 (413)
Q Consensus       111 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~  190 (413)
                      ++|+.|++++|.++. +|.   ..++|++|++++|.++.            +|..   .++|+.|++++|.++.      
T Consensus       222 ~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lts------------LP~l---p~sL~~L~Ls~N~L~~------  276 (788)
T PRK15387        222 AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTS------------LPVL---PPGLLELSIFSNPLTH------  276 (788)
T ss_pred             cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccCc------------ccCc---ccccceeeccCCchhh------
Confidence            478888888888763 554   25778888888887763            3321   3578888888887763      


Q ss_pred             ccccccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchh
Q 048333          191 CFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHS  270 (413)
Q Consensus       191 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~  270 (413)
                          +|..   ...|+.|++++|.+. .+|.   ..++|+.|++++|.+.. +|..   ..+|+.|.+++|.+. .+|. 
T Consensus       277 ----Lp~l---p~~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~-~LP~-  339 (788)
T PRK15387        277 ----LPAL---PSGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLT-SLPT-  339 (788)
T ss_pred             ----hhhc---hhhcCEEECcCCccc-cccc---cccccceeECCCCcccc-CCCC---cccccccccccCccc-cccc-
Confidence                2322   246778888888776 3443   24678888888887763 3432   245777888888773 3443 


Q ss_pred             hccCCCCCeEecCCcccCCcccccccCCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcceechhHhhhcccC
Q 048333          271 IGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKN  350 (413)
Q Consensus       271 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~  350 (413)
                        ...+|+.|++++|.+.. ++..   .++|+.|++++|.+. .+|..   ..+|+.|++++|.+.. .+ .    ..++
T Consensus       340 --lp~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt~-LP-~----l~s~  403 (788)
T PRK15387        340 --LPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS-LP-V----LPSE  403 (788)
T ss_pred             --cccccceEecCCCccCC-CCCC---Ccccceehhhccccc-cCccc---ccccceEEecCCcccC-CC-C----cccC
Confidence              12478889998888874 3322   357888888888887 34432   3578889999988874 33 1    2357


Q ss_pred             CCeeeccCccccccceeeeccccccccccceeeeccCCCCCCcchHhhcCCCCcEEeCCCCCC
Q 048333          351 LEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLTKFPNFLENQNHLVILNLSDNRI  413 (413)
Q Consensus       351 L~~L~l~~~~i~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i  413 (413)
                      |+.|++++|.++.++..         +.+|+.|++++|+++.+|..+.++++|+.|++++|+|
T Consensus       404 L~~LdLS~N~LssIP~l---------~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~L  457 (788)
T PRK15387        404 LKELMVSGNRLTSLPML---------PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPL  457 (788)
T ss_pred             CCEEEccCCcCCCCCcc---------hhhhhhhhhccCcccccChHHhhccCCCeEECCCCCC
Confidence            88999999987665431         2368889999999999998888899999999999875

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.75  E-value=3.6e-20  Score=162.14  Aligned_cols=257  Identities=21%  Similarity=0.221  Sum_probs=176.8

Q ss_pred             CCCceEEEecCCCccccccCCccccccccccceeeccccCCCCCCCCccccCcCcc---c-cCCcchhh----hhhcCCC
Q 048333           41 NTGHVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPPEIINLSRL---E-LQKPSFEN----LFEKLSN  112 (413)
Q Consensus        41 ~~~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L---~-l~~~~i~~----~~~~~~~  112 (413)
                      -+...+.++|..|.|+..-+.  +|+++++||.||++.|.++.+ -|+.+..|..|   - +.++.|.+    .|+++..
T Consensus        65 LP~~tveirLdqN~I~~iP~~--aF~~l~~LRrLdLS~N~Is~I-~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~s  141 (498)
T KOG4237|consen   65 LPPETVEIRLDQNQISSIPPG--AFKTLHRLRRLDLSKNNISFI-APDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSS  141 (498)
T ss_pred             CCCcceEEEeccCCcccCChh--hccchhhhceecccccchhhc-ChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHH
Confidence            455789999999999866655  999999999999999999887 56666655554   2 33466644    4888999


Q ss_pred             CcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCccccccc---cc
Q 048333          113 LKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAA---SF  189 (413)
Q Consensus       113 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~---~~  189 (413)
                      |+.|.+.-|.+.-...+.|..+++|..|.+.+|.+..++           -..+..+..++.+++..|.+-..-.   ..
T Consensus       142 lqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~-----------~~tf~~l~~i~tlhlA~np~icdCnL~wla  210 (498)
T KOG4237|consen  142 LQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSIC-----------KGTFQGLAAIKTLHLAQNPFICDCNLPWLA  210 (498)
T ss_pred             HHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhc-----------cccccchhccchHhhhcCccccccccchhh
Confidence            999999988887667778889999999999999876322           1256667777777776655211000   00


Q ss_pred             cccccccccccCCCC----------------------ccEE---eCCCCcCCCcch-hhhhCCCCCCEEEccCCcCcccC
Q 048333          190 RCFGELPISMGNLGS----------------------LKEL---DLSQNGFFGELP-TSIRNLFSLEKLDLSFNKLSGEF  243 (413)
Q Consensus       190 ~~~~~~~~~~~~l~~----------------------L~~L---~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~  243 (413)
                      ......|..++..+.                      ++.+   -.+.+......| .++..+++|++|++++|.++.+.
T Consensus       211 ~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~  290 (498)
T KOG4237|consen  211 DDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIE  290 (498)
T ss_pred             hHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhh
Confidence            000011111111111                      1111   111222222333 45777888888888888888777


Q ss_pred             CcccCCCCCCcEEEecCCccccccchhhccCCCCCeEecCCcccCCcccccccCCCCCcEEEccCCcc
Q 048333          244 PWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNF  311 (413)
Q Consensus       244 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~  311 (413)
                      +.+|....++++|.+..|++.......|.++..|++|++++|+++...+.+|....+|.+|++-+|.+
T Consensus       291 ~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~  358 (498)
T KOG4237|consen  291 DGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF  358 (498)
T ss_pred             hhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence            77888888888888888887555556678888888888888888877778888888888888876654

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.75  E-value=2e-19  Score=165.21  Aligned_cols=195  Identities=23%  Similarity=0.286  Sum_probs=85.4

Q ss_pred             ccccccccceeeccccCCCCCCCCccccCcCccccCCcchhhhhhcCCCCcEEEcCCccCCC------CcCccccCCCCC
Q 048333           64 SLFKLVHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENLFEKLSNLKTLNLGDVSIDS------TIPHNIKNLSSL  137 (413)
Q Consensus        64 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~L~~L~l~~~~~~~------~~~~~~~~~~~L  137 (413)
                      .+..+++|+.|+++++.++...              ...++..+...+++++++++++.+.+      .++..+..+++|
T Consensus        18 ~~~~l~~L~~l~l~~~~l~~~~--------------~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L   83 (319)
T cd00116          18 LLPKLLCLQVLRLEGNTLGEEA--------------AKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGL   83 (319)
T ss_pred             HHHHHhhccEEeecCCCCcHHH--------------HHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCce
Confidence            3444555666666665543310              01223334455566666666555431      122334445566


Q ss_pred             cEEEccCCcccccchhhhhhcccCCCccccCC---CCccEEECCCCccccccccccccccccccccCC-CCccEEeCCCC
Q 048333          138 TFVSLRNCELQAMCSFFLIQISGRIPSSLGNL---SKLLHLDLSLNELQGEAASFRCFGELPISMGNL-GSLKELDLSQN  213 (413)
Q Consensus       138 ~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~---~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~l-~~L~~L~l~~~  213 (413)
                      +.|++++|.+..           ..+..+..+   ++|++|++++|.+++....     .+...+..+ ++|++|++++|
T Consensus        84 ~~L~l~~~~~~~-----------~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~-----~l~~~l~~~~~~L~~L~L~~n  147 (319)
T cd00116          84 QELDLSDNALGP-----------DGCGVLESLLRSSSLQELKLNNNGLGDRGLR-----LLAKGLKDLPPALEKLVLGRN  147 (319)
T ss_pred             eEEEccCCCCCh-----------hHHHHHHHHhccCcccEEEeeCCccchHHHH-----HHHHHHHhCCCCceEEEcCCC
Confidence            666666655542           111111111   3366666666555432110     112223334 55566666655


Q ss_pred             cCCCc----chhhhhCCCCCCEEEccCCcCccc----CCcccCCCCCCcEEEecCCccccc----cchhhccCCCCCeEe
Q 048333          214 GFFGE----LPTSIRNLFSLEKLDLSFNKLSGE----FPWSTGNFSSLKLLNLRSCGFWSK----VPHSIGNFTRLQFLF  281 (413)
Q Consensus       214 ~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~  281 (413)
                      .+...    ++..+..+++|++|++++|.+.+.    ++..+...++|+.|++++|.+.+.    ....+..+++|++|+
T Consensus       148 ~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~  227 (319)
T cd00116         148 RLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLN  227 (319)
T ss_pred             cCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEe
Confidence            55421    222334444555555555544321    111222334555555555544221    122233444455555


Q ss_pred             cCCcccC
Q 048333          282 LGFNNFS  288 (413)
Q Consensus       282 l~~~~~~  288 (413)
                      +++|.+.
T Consensus       228 ls~n~l~  234 (319)
T cd00116         228 LGDNNLT  234 (319)
T ss_pred             cCCCcCc
Confidence            5555444

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.75  E-value=4.7e-19  Score=162.80  Aligned_cols=212  Identities=20%  Similarity=0.197  Sum_probs=124.1

Q ss_pred             ccCCCCccEEeCCCCcCCCcchhhhhCCCC---CCEEEccCCcCcc----cCCcccCCC-CCCcEEEecCCcccc----c
Q 048333          199 MGNLGSLKELDLSQNGFFGELPTSIRNLFS---LEKLDLSFNKLSG----EFPWSTGNF-SSLKLLNLRSCGFWS----K  266 (413)
Q Consensus       199 ~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~---L~~L~l~~~~~~~----~~~~~l~~~-~~L~~L~l~~~~~~~----~  266 (413)
                      +..+++|+.|++++|.+....+..+..+.+   |+.|++++|.+..    .+...+..+ ++|+.|++++|.+.+    .
T Consensus        77 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~  156 (319)
T cd00116          77 LTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEA  156 (319)
T ss_pred             HHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHH
Confidence            334455555555555544333333333322   5666665555431    111223334 666777777766542    2


Q ss_pred             cchhhccCCCCCeEecCCcccCCcc----cccccCCCCCcEEEccCCccccc----ccccccCCCCCCEEECCCCcCcce
Q 048333          267 VPHSIGNFTRLQFLFLGFNNFSGDL----LGSIGNLRSLEVIYIAKCNFSGQ----ITSSLRNLTQLVVLDMAQNSYGGT  338 (413)
Q Consensus       267 ~~~~~~~~~~L~~L~l~~~~~~~~~----~~~l~~~~~L~~L~L~~~~~~~~----~~~~~~~~~~L~~L~l~~n~~~~~  338 (413)
                      ....+..+++|++|++++|.+.+..    ...+...++|+.|++++|.+.+.    +...+..+++|++|++++|.+.+.
T Consensus       157 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~  236 (319)
T cd00116         157 LAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDA  236 (319)
T ss_pred             HHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchH
Confidence            2334556667788888777766422    22334456888888888877532    334556678888999988887742


Q ss_pred             echhHhhhc----ccCCCeeeccCccccccceeeecccccc-ccccceeeeccCCCCCC-----cchHhhcC-CCCcEEe
Q 048333          339 VELDVLLTS----WKNLEALDISLNRSSVLTKATFDATTDT-TSQKIQYRGLRSCNLTK-----FPNFLENQ-NHLVILN  407 (413)
Q Consensus       339 ~~~~~~~~~----~~~L~~L~l~~~~i~~l~~~~~~~~~~~-~~~~L~~L~l~~~~l~~-----l~~~~~~l-~~L~~L~  407 (413)
                      .. ......    .+.|++|++++|.+++.+.  ....... .+++|+++++++|.++.     +...+... +.|+.|+
T Consensus       237 ~~-~~l~~~~~~~~~~L~~L~l~~n~i~~~~~--~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~  313 (319)
T cd00116         237 GA-AALASALLSPNISLLTLSLSCNDITDDGA--KDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLW  313 (319)
T ss_pred             HH-HHHHHHHhccCCCceEEEccCCCCCcHHH--HHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcc
Confidence            22 212222    3689999999988653221  1111112 45789999999998882     44455555 7899999


Q ss_pred             CCCCCC
Q 048333          408 LSDNRI  413 (413)
Q Consensus       408 l~~n~i  413 (413)
                      +.+|++
T Consensus       314 ~~~~~~  319 (319)
T cd00116         314 VKDDSF  319 (319)
T ss_pred             cCCCCC
Confidence            998875

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.74  E-value=3.2e-17  Score=162.65  Aligned_cols=246  Identities=24%  Similarity=0.344  Sum_probs=180.7

Q ss_pred             CCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCcccccccccc
Q 048333          111 SNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFR  190 (413)
Q Consensus       111 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~  190 (413)
                      .+...|+++++.++ .+|..+  .++|+.|++++|.++.            +|..+.  ++|+.|++++|.++.      
T Consensus       178 ~~~~~L~L~~~~Lt-sLP~~I--p~~L~~L~Ls~N~Lts------------LP~~l~--~nL~~L~Ls~N~Lts------  234 (754)
T PRK15370        178 NNKTELRLKILGLT-TIPACI--PEQITTLILDNNELKS------------LPENLQ--GNIKTLYANSNQLTS------  234 (754)
T ss_pred             cCceEEEeCCCCcC-cCCccc--ccCCcEEEecCCCCCc------------CChhhc--cCCCEEECCCCcccc------
Confidence            46788999988887 466544  3579999999998873            444443  589999999998874      


Q ss_pred             ccccccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchh
Q 048333          191 CFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHS  270 (413)
Q Consensus       191 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~  270 (413)
                          +|..+.  ..|+.|++++|.+. .+|..+.  .+|+.|++++|.+. .+|..+.  ++|+.|++++|.+. .+|..
T Consensus       235 ----LP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~  301 (754)
T PRK15370        235 ----IPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAH  301 (754)
T ss_pred             ----CChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCccc
Confidence                343332  47899999999886 5666553  47999999999887 4565443  58999999999874 34443


Q ss_pred             hccCCCCCeEecCCcccCCcccccccCCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcceechhHhhhcccC
Q 048333          271 IGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKN  350 (413)
Q Consensus       271 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~  350 (413)
                      +.  ++|+.|++++|.+.. ++..+  .++|+.|++++|.++. +|..+  +++|+.|++++|.+.. ++ . .+  .+.
T Consensus       302 lp--~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~L~~-LP-~-~l--p~~  368 (754)
T PRK15370        302 LP--SGITHLNVQSNSLTA-LPETL--PPGLKTLEAGENALTS-LPASL--PPELQVLDVSKNQITV-LP-E-TL--PPT  368 (754)
T ss_pred             ch--hhHHHHHhcCCcccc-CCccc--cccceeccccCCcccc-CChhh--cCcccEEECCCCCCCc-CC-h-hh--cCC
Confidence            32  478899999998874 34333  3689999999999874 55444  3789999999998873 33 1 12  368


Q ss_pred             CCeeeccCccccccceeeeccccccccccceeeeccCCCCCCcchHhh----cCCCCcEEeCCCCCC
Q 048333          351 LEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLTKFPNFLE----NQNHLVILNLSDNRI  413 (413)
Q Consensus       351 L~~L~l~~~~i~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~----~l~~L~~L~l~~n~i  413 (413)
                      |++|++++|.++.+++..        ..+|+.|++++|+++.+|..+.    .++++..|++.+|+|
T Consensus       369 L~~LdLs~N~Lt~LP~~l--------~~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npl  427 (754)
T PRK15370        369 ITTLDVSRNALTNLPENL--------PAALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPF  427 (754)
T ss_pred             cCEEECCCCcCCCCCHhH--------HHHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCc
Confidence            999999999977654322        2369999999999997776544    458889999999985

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.71  E-value=2.7e-16  Score=155.30  Aligned_cols=257  Identities=22%  Similarity=0.207  Sum_probs=117.5

Q ss_pred             ceEEEecCCCccccccCCccccccccccceeeccccCCCCCCCCccccCcCccccCCcchhhhhhcCCCCcEEEcCCccC
Q 048333           44 HVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENLFEKLSNLKTLNLGDVSI  123 (413)
Q Consensus        44 ~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~L~~L~l~~~~~  123 (413)
                      .-..|+++.+.++ .+|.  .+.  ++|+.|+++.|.++.  +|..                    +++|++|++++|.+
T Consensus       202 ~~~~LdLs~~~Lt-sLP~--~l~--~~L~~L~L~~N~Lt~--LP~l--------------------p~~Lk~LdLs~N~L  254 (788)
T PRK15387        202 GNAVLNVGESGLT-TLPD--CLP--AHITTLVIPDNNLTS--LPAL--------------------PPELRTLEVSGNQL  254 (788)
T ss_pred             CCcEEEcCCCCCC-cCCc--chh--cCCCEEEccCCcCCC--CCCC--------------------CCCCcEEEecCCcc
Confidence            3456788888776 3444  443  478888888887764  4433                    34555555555555


Q ss_pred             CCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCccccccccccccccccccccCCC
Q 048333          124 DSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLG  203 (413)
Q Consensus       124 ~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~l~  203 (413)
                      +. +|..   .++|++|++++|.+..            +|..   ..+|+.|++++|.++.          +|.   ..+
T Consensus       255 ts-LP~l---p~sL~~L~Ls~N~L~~------------Lp~l---p~~L~~L~Ls~N~Lt~----------LP~---~p~  302 (788)
T PRK15387        255 TS-LPVL---PPGLLELSIFSNPLTH------------LPAL---PSGLCKLWIFGNQLTS----------LPV---LPP  302 (788)
T ss_pred             Cc-ccCc---ccccceeeccCCchhh------------hhhc---hhhcCEEECcCCcccc----------ccc---ccc
Confidence            42 3321   2445555555555432            1111   1344455555555442          221   123


Q ss_pred             CccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccCCCCCeEecC
Q 048333          204 SLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLG  283 (413)
Q Consensus       204 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  283 (413)
                      +|+.|++++|.+.. +|..   ..+|+.|.+++|.+. .+|.   ...+|+.|++++|.+. .+|..   .++|+.|+++
T Consensus       303 ~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~-~LP~---lp~~Lq~LdLS~N~Ls-~LP~l---p~~L~~L~Ls  370 (788)
T PRK15387        303 GLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLT-SLPT---LPSGLQELSVSDNQLA-SLPTL---PSELYKLWAY  370 (788)
T ss_pred             ccceeECCCCcccc-CCCC---cccccccccccCccc-cccc---cccccceEecCCCccC-CCCCC---Ccccceehhh
Confidence            45555555554432 2221   123444555555443 2222   1134555555555542 22221   2344455555


Q ss_pred             CcccCCcccccccCCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcceechhHhhhcccCCCeeeccCccccc
Q 048333          284 FNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSV  363 (413)
Q Consensus       284 ~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~  363 (413)
                      +|.+.. ++..   .++|+.|++++|.++ .+|..   .++|+.|++++|.+.+ ++ .    ....|+.|++++|.++.
T Consensus       371 ~N~L~~-LP~l---~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Lss-IP-~----l~~~L~~L~Ls~NqLt~  436 (788)
T PRK15387        371 NNRLTS-LPAL---PSGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLTS-LP-M----LPSGLLSLSVYRNQLTR  436 (788)
T ss_pred             cccccc-Cccc---ccccceEEecCCccc-CCCCc---ccCCCEEEccCCcCCC-CC-c----chhhhhhhhhccCcccc
Confidence            554442 2211   234555555555554 22221   2345555555555542 22 0    11234555555555443


Q ss_pred             cceeeeccccccccccceeeeccCCCCC
Q 048333          364 LTKATFDATTDTTSQKIQYRGLRSCNLT  391 (413)
Q Consensus       364 l~~~~~~~~~~~~~~~L~~L~l~~~~l~  391 (413)
                      ++....      .+++|+.|++++|.++
T Consensus       437 LP~sl~------~L~~L~~LdLs~N~Ls  458 (788)
T PRK15387        437 LPESLI------HLSSETTVNLEGNPLS  458 (788)
T ss_pred             cChHHh------hccCCCeEECCCCCCC
Confidence            322111      3344555555555554

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.68  E-value=6.5e-19  Score=154.34  Aligned_cols=253  Identities=19%  Similarity=0.193  Sum_probs=144.6

Q ss_pred             CCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCC-Cccccccccc
Q 048333          111 SNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSL-NELQGEAASF  189 (413)
Q Consensus       111 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~-~~i~~~~~~~  189 (413)
                      +.-..|+|..|+++...+.+|+.+++|+.|++++|.|+           ...|..|.+++.|..|-+.+ |+|++..   
T Consensus        67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is-----------~I~p~AF~GL~~l~~Lvlyg~NkI~~l~---  132 (498)
T KOG4237|consen   67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS-----------FIAPDAFKGLASLLSLVLYGNNKITDLP---  132 (498)
T ss_pred             CcceEEEeccCCcccCChhhccchhhhceecccccchh-----------hcChHhhhhhHhhhHHHhhcCCchhhhh---
Confidence            34566677777776666666777777777777777766           34566677777766666655 6666542   


Q ss_pred             cccccccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccc-----
Q 048333          190 RCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFW-----  264 (413)
Q Consensus       190 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-----  264 (413)
                            ...|.++..++.|.+.-|++.-....++..+++|..|.+.+|.+...-...+..+..++.+.+..+.+.     
T Consensus       133 ------k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL  206 (498)
T KOG4237|consen  133 ------KGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNL  206 (498)
T ss_pred             ------hhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccccccc
Confidence                  234666666777777666665445566777777777777666654332334555556666655544310     


Q ss_pred             -------cccchhhccCCCCCeEecCCcccC-------------------------C-cccccccCCCCCcEEEccCCcc
Q 048333          265 -------SKVPHSIGNFTRLQFLFLGFNNFS-------------------------G-DLLGSIGNLRSLEVIYIAKCNF  311 (413)
Q Consensus       265 -------~~~~~~~~~~~~L~~L~l~~~~~~-------------------------~-~~~~~l~~~~~L~~L~L~~~~~  311 (413)
                             ...+..+++........+.+.++.                         . -....|..+++|+.|++++|.+
T Consensus       207 ~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i  286 (498)
T KOG4237|consen  207 PWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKI  286 (498)
T ss_pred             chhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCcc
Confidence                   111222222221111111111111                         1 1122355567777777777777


Q ss_pred             cccccccccCCCCCCEEECCCCcCcceechhHhhhcccCCCeeeccCccccccceeeeccccccccccceeeeccCCCC
Q 048333          312 SGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNL  390 (413)
Q Consensus       312 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~L~~L~l~~~~l  390 (413)
                      ++....+|.+..++++|.+..|++.. +. ..+|.++..|++|++.+|+|+.+....++.     ..+|..|++-.|.+
T Consensus       287 ~~i~~~aFe~~a~l~eL~L~~N~l~~-v~-~~~f~~ls~L~tL~L~~N~it~~~~~aF~~-----~~~l~~l~l~~Np~  358 (498)
T KOG4237|consen  287 TRIEDGAFEGAAELQELYLTRNKLEF-VS-SGMFQGLSGLKTLSLYDNQITTVAPGAFQT-----LFSLSTLNLLSNPF  358 (498)
T ss_pred             chhhhhhhcchhhhhhhhcCcchHHH-HH-HHhhhccccceeeeecCCeeEEEecccccc-----cceeeeeehccCcc
Confidence            66666677777777777777776652 22 226667777777777777766555444443     33566666655544

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.66  E-value=7.5e-16  Score=152.94  Aligned_cols=230  Identities=21%  Similarity=0.308  Sum_probs=147.9

Q ss_pred             CCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCcccccccccc
Q 048333          111 SNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFR  190 (413)
Q Consensus       111 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~  190 (413)
                      +.|+.|++++|.++ .+|..+  .++|++|++++|.++.            +|..+.  ++|+.|++++|.+..      
T Consensus       199 ~~L~~L~Ls~N~Lt-sLP~~l--~~nL~~L~Ls~N~Lts------------LP~~l~--~~L~~L~Ls~N~L~~------  255 (754)
T PRK15370        199 EQITTLILDNNELK-SLPENL--QGNIKTLYANSNQLTS------------IPATLP--DTIQEMELSINRITE------  255 (754)
T ss_pred             cCCcEEEecCCCCC-cCChhh--ccCCCEEECCCCcccc------------CChhhh--ccccEEECcCCccCc------
Confidence            57888888888877 455544  3578888888887763            444333  468888888888763      


Q ss_pred             ccccccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchh
Q 048333          191 CFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHS  270 (413)
Q Consensus       191 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~  270 (413)
                          +|..+.  .+|+.|++++|.+. .+|..+.  ++|+.|++++|.+. .+|..+.  ++|+.|++++|.+. .+|..
T Consensus       256 ----LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt-~LP~~  322 (754)
T PRK15370        256 ----LPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLT-ALPET  322 (754)
T ss_pred             ----CChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhcCCccc-cCCcc
Confidence                343332  46888888888776 4555432  47888888888776 3444332  46778888887774 34432


Q ss_pred             hccCCCCCeEecCCcccCCcccccccCCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcceechhHhhhcccC
Q 048333          271 IGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKN  350 (413)
Q Consensus       271 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~  350 (413)
                      +  .++|+.|++++|.+.. ++..+  .++|+.|++++|+++ .+|..+  .++|+.|++++|.+..... .  +.  ..
T Consensus       323 l--~~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt~LP~-~--l~--~s  389 (754)
T PRK15370        323 L--PPGLKTLEAGENALTS-LPASL--PPELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALTNLPE-N--LP--AA  389 (754)
T ss_pred             c--cccceeccccCCcccc-CChhh--cCcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCCCCCH-h--HH--HH
Confidence            2  3578888888887764 44333  268888888888876 445433  3678888888888764322 1  21  35


Q ss_pred             CCeeeccCccccccceeeeccccccccccceeeeccCCCCC
Q 048333          351 LEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLT  391 (413)
Q Consensus       351 L~~L~l~~~~i~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~  391 (413)
                      |+.|++++|++..++........  ..+.+..+++.+|.++
T Consensus       390 L~~LdLs~N~L~~LP~sl~~~~~--~~~~l~~L~L~~Npls  428 (754)
T PRK15370        390 LQIMQASRNNLVRLPESLPHFRG--EGPQPTRIIVEYNPFS  428 (754)
T ss_pred             HHHHhhccCCcccCchhHHHHhh--cCCCccEEEeeCCCcc
Confidence            78888888886655432111111  3466778888888775

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.51  E-value=1.9e-16  Score=123.60  Aligned_cols=115  Identities=30%  Similarity=0.457  Sum_probs=51.3

Q ss_pred             ccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCc-ccCCcccCCCCCCcEEEecCCccccccchhhcc
Q 048333          195 LPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLS-GEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGN  273 (413)
Q Consensus       195 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~  273 (413)
                      +|..++++++|+.|++.-|.+. ..|..|+.+|-|+.|++.+|.+. ..+|..|..+..|+.|.++++.+ +.+|..+.+
T Consensus        71 lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndf-e~lp~dvg~  148 (264)
T KOG0617|consen   71 LPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDF-EILPPDVGK  148 (264)
T ss_pred             cChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCc-ccCChhhhh
Confidence            3344444444444444444332 34444444444444444444432 12444444444444444444444 344444444


Q ss_pred             CCCCCeEecCCcccCCcccccccCCCCCcEEEccCCccc
Q 048333          274 FTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFS  312 (413)
Q Consensus       274 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~  312 (413)
                      +.+|+.|.+.+|.+. ..+..++.+..|++|++.+|+++
T Consensus       149 lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~  186 (264)
T KOG0617|consen  149 LTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT  186 (264)
T ss_pred             hcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee
Confidence            444444444444443 23444444445555555555444

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.49  E-value=5.4e-16  Score=121.09  Aligned_cols=134  Identities=29%  Similarity=0.481  Sum_probs=79.1

Q ss_pred             hhcCCCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCcccccc
Q 048333          107 FEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEA  186 (413)
Q Consensus       107 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~  186 (413)
                      +..+.+|+.|++.+|+++ .+|..++.+++|+.|++.-|.+.            .+|..|+.+|.|+.|++..|.+... 
T Consensus        52 ia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~------------~lprgfgs~p~levldltynnl~e~-  117 (264)
T KOG0617|consen   52 IAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN------------ILPRGFGSFPALEVLDLTYNNLNEN-  117 (264)
T ss_pred             HHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh------------cCccccCCCchhhhhhccccccccc-
Confidence            445566666666666665 45555666666666666655553            4566666666666666666665543 


Q ss_pred             ccccccccccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCcc
Q 048333          187 ASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGF  263 (413)
Q Consensus       187 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~  263 (413)
                             .+|..|..++.|+.|+++.|.+. .+|...+++.+|+.|.+..|.+. .+|..++.+..|++|++.++++
T Consensus       118 -------~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl  185 (264)
T KOG0617|consen  118 -------SLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRL  185 (264)
T ss_pred             -------cCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhccccee
Confidence                   35555556666666666666553 45555566666666666655554 3555555555555566655555

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.44  E-value=1.2e-14  Score=126.02  Aligned_cols=138  Identities=19%  Similarity=0.282  Sum_probs=69.7

Q ss_pred             CCCCCeEecCCcccCCcc----cccccCCCCCcEEEccCCccccc----ccccccCCCCCCEEECCCCcCcce--echhH
Q 048333          274 FTRLQFLFLGFNNFSGDL----LGSIGNLRSLEVIYIAKCNFSGQ----ITSSLRNLTQLVVLDMAQNSYGGT--VELDV  343 (413)
Q Consensus       274 ~~~L~~L~l~~~~~~~~~----~~~l~~~~~L~~L~L~~~~~~~~----~~~~~~~~~~L~~L~l~~n~~~~~--~~~~~  343 (413)
                      -+.|+++....|++.+..    ...+...+.|+.+.+..|.+...    ....+..|++|+.|||.+|.++..  ..+..
T Consensus       156 ~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Lak  235 (382)
T KOG1909|consen  156 KPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAK  235 (382)
T ss_pred             CcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHH
Confidence            345566666655554322    22233455666666666555421    223455566666666666655522  12223


Q ss_pred             hhhcccCCCeeeccCccccccceeeecccccc--ccccceeeeccCCCCC-----CcchHhhcCCCCcEEeCCCCCC
Q 048333          344 LLTSWKNLEALDISLNRSSVLTKATFDATTDT--TSQKIQYRGLRSCNLT-----KFPNFLENQNHLVILNLSDNRI  413 (413)
Q Consensus       344 ~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~--~~~~L~~L~l~~~~l~-----~l~~~~~~l~~L~~L~l~~n~i  413 (413)
                      .+..+++|+.|++++|.+++-+...  ....+  ..|+|+++.+.+|.++     .+-.++...|.|..|+|++|.+
T Consensus       236 aL~s~~~L~El~l~dcll~~~Ga~a--~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  236 ALSSWPHLRELNLGDCLLENEGAIA--FVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HhcccchheeecccccccccccHHH--HHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            4555666666666666654332111  11111  3456666666666665     2234444566666666666653

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.42  E-value=1.8e-14  Score=124.97  Aligned_cols=208  Identities=23%  Similarity=0.246  Sum_probs=127.4

Q ss_pred             CCCceEEEecCCCcccccc--CCccccccccccceeeccccCCCCC---CCCccccCcCccccCCcchhhhhhcCCCCcE
Q 048333           41 NTGHVIKLNLSHGCLFGSI--NSSSSLFKLVHLKWLNLALNDFNSS---EIPPEIINLSRLELQKPSFENLFEKLSNLKT  115 (413)
Q Consensus        41 ~~~~l~~L~l~~~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~---~~~~~~~~L~~L~l~~~~i~~~~~~~~~L~~  115 (413)
                      ....+++++|++|.+...-  .....+...++|+..+++.- +++.   ++|+.+          ..+.+++.++|+|++
T Consensus        28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L----------~~l~~aL~~~~~L~~   96 (382)
T KOG1909|consen   28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEAL----------KMLSKALLGCPKLQK   96 (382)
T ss_pred             ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHH----------HHHHHHHhcCCceeE
Confidence            4468999999999986321  11125667788888888753 2222   233333          223556778899999


Q ss_pred             EEcCCccCCCCcC----ccccCCCCCcEEEccCCcccccchhhhhh-ccc-CCCccccCCCCccEEECCCCccccccccc
Q 048333          116 LNLGDVSIDSTIP----HNIKNLSSLTFVSLRNCELQAMCSFFLIQ-ISG-RIPSSLGNLSKLLHLDLSLNELQGEAASF  189 (413)
Q Consensus       116 L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~l~~~~~~~~~~-~~~-~~~~~l~~~~~L~~L~l~~~~i~~~~~~~  189 (413)
                      |+||+|.+....+    ..+.++..|++|.+.+|.+.......+.. +.. ....-.+.-+.|+.+..+.|++.+..+. 
T Consensus        97 ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~-  175 (382)
T KOG1909|consen   97 LDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGAT-  175 (382)
T ss_pred             eeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHH-
Confidence            9999999864333    34467899999999999876321100000 000 0112234567888888888887765432 


Q ss_pred             cccccccccccCCCCccEEeCCCCcCCC----cchhhhhCCCCCCEEEccCCcCccc----CCcccCCCCCCcEEEecCC
Q 048333          190 RCFGELPISMGNLGSLKELDLSQNGFFG----ELPTSIRNLFSLEKLDLSFNKLSGE----FPWSTGNFSSLKLLNLRSC  261 (413)
Q Consensus       190 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~----~~~~~l~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~  261 (413)
                          .+...+...+.|+.+.+++|.+..    .+..++..+++|++|++.+|.++..    +...+..+++|+.|++++|
T Consensus       176 ----~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dc  251 (382)
T KOG1909|consen  176 ----ALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDC  251 (382)
T ss_pred             ----HHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccc
Confidence                244556667778888888777642    2334566777777777777766421    3334445556666666666


Q ss_pred             ccc
Q 048333          262 GFW  264 (413)
Q Consensus       262 ~~~  264 (413)
                      .+.
T Consensus       252 ll~  254 (382)
T KOG1909|consen  252 LLE  254 (382)
T ss_pred             ccc
Confidence            553

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.33  E-value=1.3e-13  Score=123.09  Aligned_cols=212  Identities=25%  Similarity=0.244  Sum_probs=124.2

Q ss_pred             cCCCCccEEECCCCccccccccccccccccccccCCCCccEEeCCCCcCCC--cchhhhhCCCCCCEEEccCCcCcccCC
Q 048333          167 GNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFG--ELPTSIRNLFSLEKLDLSFNKLSGEFP  244 (413)
Q Consensus       167 ~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~~~  244 (413)
                      .++.+|+.+.+.++.+.....        -.....|++++.|++++|-+..  .+......+|+|+.|+++.|.+.....
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~--------~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~  189 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGI--------EEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFIS  189 (505)
T ss_pred             hhHHhhhheeecCccccccch--------hhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCcc
Confidence            467888998898887764311        1346678899999999987653  244566788999999999887752211


Q ss_pred             c-ccCCCCCCcEEEecCCcccc-ccchhhccCCCCCeEecCCcccCCcccccccCCCCCcEEEccCCcccccc-cccccC
Q 048333          245 W-STGNFSSLKLLNLRSCGFWS-KVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQI-TSSLRN  321 (413)
Q Consensus       245 ~-~l~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~-~~~~~~  321 (413)
                      . .-..+++|+.|.+++|++.. .+......+|+|+.|.+..|...-......+.+..|++|+|++|++.+.. ......
T Consensus       190 s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~  269 (505)
T KOG3207|consen  190 SNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGT  269 (505)
T ss_pred             ccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccccccccccccc
Confidence            1 11245677888888887742 23333456677777777777421111122233566777777777665221 234455


Q ss_pred             CCCCCEEECCCCcCcceechh----HhhhcccCCCeeeccCccccccceeeecccccc-ccccceeeeccCCCCC
Q 048333          322 LTQLVVLDMAQNSYGGTVELD----VLLTSWKNLEALDISLNRSSVLTKATFDATTDT-TSQKIQYRGLRSCNLT  391 (413)
Q Consensus       322 ~~~L~~L~l~~n~~~~~~~~~----~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~-~~~~L~~L~l~~~~l~  391 (413)
                      ++.|..|+++.+.+.+....+    .-...+++|++|++..|+|...     .....+ .+++|+.|.+..+.++
T Consensus       270 l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w-----~sl~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  270 LPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDW-----RSLNHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             ccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccc-----cccchhhccchhhhhhccccccc
Confidence            666777777666665322211    0134456666666666664321     112222 4556666666655554

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.19  E-value=3.8e-12  Score=108.56  Aligned_cols=201  Identities=17%  Similarity=0.155  Sum_probs=111.8

Q ss_pred             ccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCC---ccccccchhh
Q 048333          195 LPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSC---GFWSKVPHSI  271 (413)
Q Consensus       195 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~---~~~~~~~~~~  271 (413)
                      +|..+.-+++|+.+.+++|.-. .+......-|.|+++.+.+..... .+. +.....+  .+.++-   ...+.....+
T Consensus       206 l~f~l~~f~~l~~~~~s~~~~~-~i~~~~~~kptl~t~~v~~s~~~~-~~~-l~pe~~~--~D~~~~E~~t~~G~~~~~~  280 (490)
T KOG1259|consen  206 LSFNLNAFRNLKTLKFSALSTE-NIVDIELLKPTLQTICVHNTTIQD-VPS-LLPETIL--ADPSGSEPSTSNGSALVSA  280 (490)
T ss_pred             cccchHHhhhhheeeeeccchh-heeceeecCchhheeeeecccccc-ccc-ccchhhh--cCccCCCCCccCCceEEec
Confidence            4445556677777777776543 222222233567776665443321 111 1100111  111110   1112222333


Q ss_pred             ccCCCCCeEecCCcccCCcccccccCCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcceechhHhhhcccCC
Q 048333          272 GNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNL  351 (413)
Q Consensus       272 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L  351 (413)
                      ..++-|+.+++++|.+. .+.....-.|.++.|+++.|.++ .+. .+..+++|+.||+++|.+.....|   -..+.++
T Consensus       281 dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~-nLa~L~~L~~LDLS~N~Ls~~~Gw---h~KLGNI  354 (490)
T KOG1259|consen  281 DTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQ-NLAELPQLQLLDLSGNLLAECVGW---HLKLGNI  354 (490)
T ss_pred             chHhhhhhccccccchh-hhhhhhhhccceeEEecccccee-eeh-hhhhcccceEeecccchhHhhhhh---HhhhcCE
Confidence            44556777777777776 34555556677777777777775 222 256677777777777776654443   2455567


Q ss_pred             CeeeccCccccccceeeeccccccccccceeeeccCCCCCCc--chHhhcCCCCcEEeCCCCCC
Q 048333          352 EALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLTKF--PNFLENQNHLVILNLSDNRI  413 (413)
Q Consensus       352 ~~L~l~~~~i~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~l--~~~~~~l~~L~~L~l~~n~i  413 (413)
                      ++|.+++|.|.++...       ..+.+|..|++++|+|..+  ...++++|-|++|.+.+|+|
T Consensus       355 KtL~La~N~iE~LSGL-------~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl  411 (490)
T KOG1259|consen  355 KTLKLAQNKIETLSGL-------RKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPL  411 (490)
T ss_pred             eeeehhhhhHhhhhhh-------HhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCc
Confidence            7777777775443211       1456677777777777633  34567777777777777764

>PLN03150 hypothetical protein; Provisional

Probab=99.15  E-value=1.9e-10  Score=114.09  Aligned_cols=132  Identities=25%  Similarity=0.421  Sum_probs=97.9

Q ss_pred             CCCCCCCCCCCCcccceEEeeCCC----CceEEEecCCCccccccCCccccccccccceeeccccCCCCCCCCccccCcC
Q 048333           19 ASWKPEEGSVDCYSWDVVHCNKNT----GHVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPPEIINLS   94 (413)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~   94 (413)
                      ..|+...|....|.|.|+.|....    ..++.|+|+++.+.+..+.  .+..+++|+.|++++|.+.+. +        
T Consensus       390 ~~W~g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~--~i~~L~~L~~L~Ls~N~l~g~-i--------  458 (623)
T PLN03150        390 FGWNGDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPN--DISKLRHLQSINLSGNSIRGN-I--------  458 (623)
T ss_pred             CCCCCCCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCH--HHhCCCCCCEEECCCCcccCc-C--------
Confidence            479642222233489999995321    2488899999988877777  788899999999998887654 3        


Q ss_pred             ccccCCcchhhhhhcCCCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCC-CCcc
Q 048333           95 RLELQKPSFENLFEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNL-SKLL  173 (413)
Q Consensus        95 ~L~l~~~~i~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~-~~L~  173 (413)
                               |..++.+++|+.|++++|.+.+.+|..+.++++|++|++++|.+.           +.+|..+... .++.
T Consensus       459 ---------P~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~-----------g~iP~~l~~~~~~~~  518 (623)
T PLN03150        459 ---------PPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLS-----------GRVPAALGGRLLHRA  518 (623)
T ss_pred             ---------ChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCccc-----------ccCChHHhhccccCc
Confidence                     345667888899999998888888888888888999999888877           5677766542 3556


Q ss_pred             EEECCCCc
Q 048333          174 HLDLSLNE  181 (413)
Q Consensus       174 ~L~l~~~~  181 (413)
                      .+++.+|.
T Consensus       519 ~l~~~~N~  526 (623)
T PLN03150        519 SFNFTDNA  526 (623)
T ss_pred             eEEecCCc
Confidence            66766664

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.14  E-value=1.1e-11  Score=111.00  Aligned_cols=216  Identities=21%  Similarity=0.215  Sum_probs=160.0

Q ss_pred             cccccCCCCccEEeCCCCcCCCcch--hhhhCCCCCCEEEccCCcCcc--cCCcccCCCCCCcEEEecCCccccccch-h
Q 048333          196 PISMGNLGSLKELDLSQNGFFGELP--TSIRNLFSLEKLDLSFNKLSG--EFPWSTGNFSSLKLLNLRSCGFWSKVPH-S  270 (413)
Q Consensus       196 ~~~~~~l~~L~~L~l~~~~~~~~~~--~~l~~~~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~  270 (413)
                      ...-+++.+|+++.+.++.+. ..+  .....|++++.|+++.|-+..  ........+|+|+.|+++.|.+...... .
T Consensus       114 ~akQsn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~  192 (505)
T KOG3207|consen  114 AAKQSNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNT  192 (505)
T ss_pred             HHHhhhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccc
Confidence            334457789999999988875 333  356789999999999986642  2233446789999999999987432221 1


Q ss_pred             hccCCCCCeEecCCcccCC-cccccccCCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcceechhHhhhccc
Q 048333          271 IGNFTRLQFLFLGFNNFSG-DLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWK  349 (413)
Q Consensus       271 ~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~  349 (413)
                      -..+++|+.|.++.|+++. .....+..+|+++.|.+..|.....-.....-+..|++|+|++|.+.+..... ....+|
T Consensus       193 ~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~-~~~~l~  271 (505)
T KOG3207|consen  193 TLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGY-KVGTLP  271 (505)
T ss_pred             hhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccccccccc-cccccc
Confidence            2357899999999999874 33445567899999999999532232333445788999999999987655433 678899


Q ss_pred             CCCeeeccCccccccceeeecccccc-ccccceeeeccCCCCCCcc--hHhhcCCCCcEEeCCCCCC
Q 048333          350 NLEALDISLNRSSVLTKATFDATTDT-TSQKIQYRGLRSCNLTKFP--NFLENQNHLVILNLSDNRI  413 (413)
Q Consensus       350 ~L~~L~l~~~~i~~l~~~~~~~~~~~-~~~~L~~L~l~~~~l~~l~--~~~~~l~~L~~L~l~~n~i  413 (413)
                      .|+.|+++.|.+.++.....+...-. .+++|++|++..|++.+++  ..+..+++|+.|.+.+|.|
T Consensus       272 ~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~l  338 (505)
T KOG3207|consen  272 GLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYL  338 (505)
T ss_pred             chhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccc
Confidence            99999999999988765544443333 8899999999999997554  5577788999998888764

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.09  E-value=2.2e-11  Score=103.91  Aligned_cols=190  Identities=26%  Similarity=0.240  Sum_probs=85.6

Q ss_pred             hhcCCCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhh------------cccCCCccccCCCCccE
Q 048333          107 FEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQ------------ISGRIPSSLGNLSKLLH  174 (413)
Q Consensus       107 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~------------~~~~~~~~l~~~~~L~~  174 (413)
                      +..+++|..+.++.|.-.. +.+....=|.|+++.+....++..+......            ..|.....+..-..|+.
T Consensus       210 l~~f~~l~~~~~s~~~~~~-i~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~Lte  288 (490)
T KOG1259|consen  210 LNAFRNLKTLKFSALSTEN-IVDIELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQELTE  288 (490)
T ss_pred             hHHhhhhheeeeeccchhh-eeceeecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEecchHhhhhh
Confidence            4456666777776665432 2222223366777777665554432211110            00000011111234555


Q ss_pred             EECCCCccccccccccccccccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCc
Q 048333          175 LDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLK  254 (413)
Q Consensus       175 L~l~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~  254 (413)
                      +++++|.|+..          ..+..-.+.++.|++++|.+.. + ..+..+++|+.|++++|.++ .+..+-.++.+++
T Consensus       289 lDLS~N~I~~i----------DESvKL~Pkir~L~lS~N~i~~-v-~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIK  355 (490)
T KOG1259|consen  289 LDLSGNLITQI----------DESVKLAPKLRRLILSQNRIRT-V-QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIK  355 (490)
T ss_pred             ccccccchhhh----------hhhhhhccceeEEeccccceee-e-hhhhhcccceEeecccchhH-hhhhhHhhhcCEe
Confidence            55555555422          2233344555555555555531 1 22455555555555555544 2333333445555


Q ss_pred             EEEecCCccccccchhhccCCCCCeEecCCcccCC-cccccccCCCCCcEEEccCCccc
Q 048333          255 LLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSG-DLLGSIGNLRSLEVIYIAKCNFS  312 (413)
Q Consensus       255 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~L~~~~~~  312 (413)
                      +|.+.+|.+  +..+.+.++=+|..|++.+|++.. +-...++++|.|+.+.+.+|.+.
T Consensus       356 tL~La~N~i--E~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~  412 (490)
T KOG1259|consen  356 TLKLAQNKI--ETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA  412 (490)
T ss_pred             eeehhhhhH--hhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence            555555544  112233444445555555555432 12233444555555555555543

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.04  E-value=1.2e-10  Score=94.96  Aligned_cols=104  Identities=25%  Similarity=0.323  Sum_probs=22.0

Q ss_pred             CCCEEEccCCcCcccCCcccC-CCCCCcEEEecCCccccccchhhccCCCCCeEecCCcccCCcccccc-cCCCCCcEEE
Q 048333          228 SLEKLDLSFNKLSGEFPWSTG-NFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSI-GNLRSLEVIY  305 (413)
Q Consensus       228 ~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l-~~~~~L~~L~  305 (413)
                      ++++|++.++.+...  ..+. .+.+|+.|++++|.+.. + ..+..+++|+.|++++|.+.+. ...+ ..+|+|+.|+
T Consensus        20 ~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~-l-~~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L~~L~   94 (175)
T PF14580_consen   20 KLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITK-L-EGLPGLPRLKTLDLSNNRISSI-SEGLDKNLPNLQELY   94 (175)
T ss_dssp             ------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--EEE
T ss_pred             ccccccccccccccc--cchhhhhcCCCEEECCCCCCcc-c-cCccChhhhhhcccCCCCCCcc-ccchHHhCCcCCEEE
Confidence            445555555554421  1122 23445555555554421 1 1244445555555555554432 1112 2344555555


Q ss_pred             ccCCccccc-ccccccCCCCCCEEECCCCcCc
Q 048333          306 IAKCNFSGQ-ITSSLRNLTQLVVLDMAQNSYG  336 (413)
Q Consensus       306 L~~~~~~~~-~~~~~~~~~~L~~L~l~~n~~~  336 (413)
                      +++|++.+. .-..+..+++|+.|++.+|++.
T Consensus        95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   95 LSNNKISDLNELEPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             -TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred             CcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence            555544321 1123334455555555555444

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.04  E-value=7.7e-11  Score=119.44  Aligned_cols=109  Identities=31%  Similarity=0.474  Sum_probs=75.9

Q ss_pred             hhhcCCCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCccccc
Q 048333          106 LFEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGE  185 (413)
Q Consensus       106 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~  185 (413)
                      +|..+|.|++||+++|.-.+.+|..++.+-+|++|+++++.+.            .+|..+.+++.|.+|++..+.....
T Consensus       566 ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~------------~LP~~l~~Lk~L~~Lnl~~~~~l~~  633 (889)
T KOG4658|consen  566 FFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS------------HLPSGLGNLKKLIYLNLEVTGRLES  633 (889)
T ss_pred             HHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc------------ccchHHHHHHhhheecccccccccc
Confidence            4778899999999887766788888888999999999888875            6788888888888888887653321


Q ss_pred             cccccccccccccccCCCCccEEeCCCCcCC--CcchhhhhCCCCCCEEEcc
Q 048333          186 AASFRCFGELPISMGNLGSLKELDLSQNGFF--GELPTSIRNLFSLEKLDLS  235 (413)
Q Consensus       186 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~--~~~~~~l~~~~~L~~L~l~  235 (413)
                               .|.....+.+|++|.+......  ......+..+.+|+.+...
T Consensus       634 ---------~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~  676 (889)
T KOG4658|consen  634 ---------IPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSIT  676 (889)
T ss_pred             ---------ccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheee
Confidence                     2344555788888877655421  1222334455555555543

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.03  E-value=8.1e-12  Score=115.23  Aligned_cols=168  Identities=24%  Similarity=0.333  Sum_probs=116.9

Q ss_pred             EEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccCCCCCeEecCCcccCCcccccccCCCCCcEEEccCCc
Q 048333          231 KLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCN  310 (413)
Q Consensus       231 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~  310 (413)
                      ..+++.|.+. .+|..+..+..|+.+.+..|.+ ..+|..+..+..|++++++.|.+. ..+..++.+| |+.|-+++|+
T Consensus        79 ~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~-r~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNk  154 (722)
T KOG0532|consen   79 FADLSRNRFS-ELPEEACAFVSLESLILYHNCI-RTIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNK  154 (722)
T ss_pred             hhhccccccc-cCchHHHHHHHHHHHHHHhccc-eecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCc
Confidence            3455555554 4555555556666666666655 456666777777777888777776 4555555554 7777788888


Q ss_pred             ccccccccccCCCCCCEEECCCCcCcceechhHhhhcccCCCeeeccCccccccceeeeccccccccccceeeeccCCCC
Q 048333          311 FSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNL  390 (413)
Q Consensus       311 ~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~L~~L~l~~~~l  390 (413)
                      ++ ..|..++..+.|..|+.+.|.+.+...   .+.++.+|+.|++..|.+.++++...+.       .|..||++.|++
T Consensus       155 l~-~lp~~ig~~~tl~~ld~s~nei~slps---ql~~l~slr~l~vrRn~l~~lp~El~~L-------pLi~lDfScNki  223 (722)
T KOG0532|consen  155 LT-SLPEEIGLLPTLAHLDVSKNEIQSLPS---QLGYLTSLRDLNVRRNHLEDLPEELCSL-------PLIRLDFSCNKI  223 (722)
T ss_pred             cc-cCCcccccchhHHHhhhhhhhhhhchH---HhhhHHHHHHHHHhhhhhhhCCHHHhCC-------ceeeeecccCce
Confidence            76 566666677788888888887764433   5677778888888888766655554432       377888888888


Q ss_pred             CCcchHhhcCCCCcEEeCCCCCC
Q 048333          391 TKFPNFLENQNHLVILNLSDNRI  413 (413)
Q Consensus       391 ~~l~~~~~~l~~L~~L~l~~n~i  413 (413)
                      ..+|..|.+++.|++|.|.+|++
T Consensus       224 s~iPv~fr~m~~Lq~l~LenNPL  246 (722)
T KOG0532|consen  224 SYLPVDFRKMRHLQVLQLENNPL  246 (722)
T ss_pred             eecchhhhhhhhheeeeeccCCC
Confidence            88888888888888888888875

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.00  E-value=7.5e-10  Score=90.29  Aligned_cols=82  Identities=29%  Similarity=0.304  Sum_probs=22.6

Q ss_pred             ccCCCCccEEeCCCCcCCCcchhhh-hCCCCCCEEEccCCcCccc-CCcccCCCCCCcEEEecCCccccc---cchhhcc
Q 048333          199 MGNLGSLKELDLSQNGFFGELPTSI-RNLFSLEKLDLSFNKLSGE-FPWSTGNFSSLKLLNLRSCGFWSK---VPHSIGN  273 (413)
Q Consensus       199 ~~~l~~L~~L~l~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~---~~~~~~~  273 (413)
                      +..+++|+.|++++|.+.+ +...+ ..+|+|+.|.+++|.+... .-..+..+++|+.|++.+|.+...   -...+..
T Consensus        60 l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~  138 (175)
T PF14580_consen   60 LPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYK  138 (175)
T ss_dssp             ----TT--EEE--SS---S--CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH
T ss_pred             ccChhhhhhcccCCCCCCc-cccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHH
Confidence            3344445555555554442 22222 2345555555555544321 112233445555555555544221   1223445


Q ss_pred             CCCCCeEe
Q 048333          274 FTRLQFLF  281 (413)
Q Consensus       274 ~~~L~~L~  281 (413)
                      +|+|+.||
T Consensus       139 lP~Lk~LD  146 (175)
T PF14580_consen  139 LPSLKVLD  146 (175)
T ss_dssp             -TT-SEET
T ss_pred             cChhheeC
Confidence            55555554

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.98  E-value=1.4e-09  Score=102.82  Aligned_cols=133  Identities=38%  Similarity=0.486  Sum_probs=60.6

Q ss_pred             cccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccCCCC
Q 048333          198 SMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRL  277 (413)
Q Consensus       198 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L  277 (413)
                      .+..+++|+.|+++.|.+. .++......+.|+.|++++|.+. .+|........|+++.++++.. -..+..+..+.++
T Consensus       158 ~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~-~~~~~~~~~~~~l  234 (394)
T COG4886         158 PLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSI-IELLSSLSNLKNL  234 (394)
T ss_pred             hhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcc-eecchhhhhcccc
Confidence            3444455555555555543 23332334445555555555444 2333222333355555554432 1233334444555


Q ss_pred             CeEecCCcccCCcccccccCCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCc
Q 048333          278 QFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYG  336 (413)
Q Consensus       278 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~  336 (413)
                      ..+.+..+.+.. .+..++.++.++.|++++|.++ .++. +....+++.|+++++.+.
T Consensus       235 ~~l~l~~n~~~~-~~~~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~  290 (394)
T COG4886         235 SGLELSNNKLED-LPESIGNLSNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNSLS  290 (394)
T ss_pred             cccccCCceeee-ccchhccccccceecccccccc-cccc-ccccCccCEEeccCcccc
Confidence            555555544432 2333444555555555555554 2222 444555555555555444

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.97  E-value=2.9e-10  Score=115.35  Aligned_cols=180  Identities=28%  Similarity=0.339  Sum_probs=119.9

Q ss_pred             cCCCCcEEEcCCcc--CCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCcccccc
Q 048333          109 KLSNLKTLNLGDVS--IDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEA  186 (413)
Q Consensus       109 ~~~~L~~L~l~~~~--~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~  186 (413)
                      .+++|++|-+..+.  +.......|..+|.|+.|++++|.-.           +.+|..++.+.+||+|+++++.+.   
T Consensus       543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l-----------~~LP~~I~~Li~LryL~L~~t~I~---  608 (889)
T KOG4658|consen  543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSL-----------SKLPSSIGELVHLRYLDLSDTGIS---  608 (889)
T ss_pred             CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCcc-----------CcCChHHhhhhhhhcccccCCCcc---
Confidence            35689999988876  44444556888999999999987643           578999999999999999999988   


Q ss_pred             ccccccccccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcC--cccCCcccCCCCCCcEEEecCCccc
Q 048333          187 ASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKL--SGEFPWSTGNFSSLKLLNLRSCGFW  264 (413)
Q Consensus       187 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~--~~~~~~~l~~~~~L~~L~l~~~~~~  264 (413)
                             .+|..+.+++.|.+|++..+.....++.....+.+|++|.+.....  +......+..+.+|+.+.+..... 
T Consensus       609 -------~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~-  680 (889)
T KOG4658|consen  609 -------HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV-  680 (889)
T ss_pred             -------ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh-
Confidence                   4799999999999999998876556677777799999999876542  122233345556666665543322 


Q ss_pred             cccchhhccCCCCC----eEecCCcccCCcccccccCCCCCcEEEccCCccc
Q 048333          265 SKVPHSIGNFTRLQ----FLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFS  312 (413)
Q Consensus       265 ~~~~~~~~~~~~L~----~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~  312 (413)
                       .....+..+.+|.    .+.+..+... .....+..+++|+.|.+.+|.+.
T Consensus       681 -~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~  730 (889)
T KOG4658|consen  681 -LLLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGIS  730 (889)
T ss_pred             -HhHhhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCc
Confidence             1112222233332    2222222211 23344455666777777666664

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.93  E-value=1.8e-09  Score=102.10  Aligned_cols=196  Identities=31%  Similarity=0.382  Sum_probs=127.0

Q ss_pred             cEEECCCCccccccccccccccccccccCCCCccEEeCCCCcCCCcchhhhhCCC-CCCEEEccCCcCcccCCcccCCCC
Q 048333          173 LHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLF-SLEKLDLSFNKLSGEFPWSTGNFS  251 (413)
Q Consensus       173 ~~L~l~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~l~~~~  251 (413)
                      ..+....+.+...          ...+...+.++.+++.++.+. .++....... +|+.|+++++.+. .++..+..++
T Consensus        96 ~~l~~~~~~~~~~----------~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~  163 (394)
T COG4886          96 PSLDLNLNRLRSN----------ISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLP  163 (394)
T ss_pred             ceeeccccccccC----------chhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccc
Confidence            3567777766321          123344467888888888776 4555455553 7888888888776 4445567778


Q ss_pred             CCcEEEecCCccccccchhhccCCCCCeEecCCcccCCcccccccCCCCCcEEEccCCcccccccccccCCCCCCEEECC
Q 048333          252 SLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMA  331 (413)
Q Consensus       252 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~  331 (413)
                      .|+.|++++|.+ ...+......+.|+.|++++|.+.+ .+........|+++.+++|... ..+..+..+..+..+.+.
T Consensus       164 ~L~~L~l~~N~l-~~l~~~~~~~~~L~~L~ls~N~i~~-l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~  240 (394)
T COG4886         164 NLKNLDLSFNDL-SDLPKLLSNLSNLNNLDLSGNKISD-LPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELS  240 (394)
T ss_pred             cccccccCCchh-hhhhhhhhhhhhhhheeccCCcccc-CchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccC
Confidence            888888888877 3444444466778888888887763 4443344556788888877543 445556667777777777


Q ss_pred             CCcCcceechhHhhhcccCCCeeeccCccccccceeeeccccccccccceeeeccCCCCCCc
Q 048333          332 QNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLTKF  393 (413)
Q Consensus       332 ~n~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~l  393 (413)
                      +|.+.....   .+..++.+++|++++|.++.++. .      ....++++|+++++.+...
T Consensus       241 ~n~~~~~~~---~~~~l~~l~~L~~s~n~i~~i~~-~------~~~~~l~~L~~s~n~~~~~  292 (394)
T COG4886         241 NNKLEDLPE---SIGNLSNLETLDLSNNQISSISS-L------GSLTNLRELDLSGNSLSNA  292 (394)
T ss_pred             Cceeeeccc---hhccccccceecccccccccccc-c------cccCccCEEeccCcccccc
Confidence            776653222   45667778888888887665544 1      1455677888887777643

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.85  E-value=6.3e-10  Score=95.03  Aligned_cols=207  Identities=16%  Similarity=0.085  Sum_probs=116.9

Q ss_pred             CCCCccEEECCCCccccccccccccccccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCccc-CCcc
Q 048333          168 NLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGE-FPWS  246 (413)
Q Consensus       168 ~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~  246 (413)
                      .+.+++.+++.+|.|++...       +...+.++|.|+.|+++.|.+...+...-....+|+.|.+.+..+... ....
T Consensus        69 ~~~~v~elDL~~N~iSdWse-------I~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~  141 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSE-------IGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSS  141 (418)
T ss_pred             HhhhhhhhhcccchhccHHH-------HHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhh
Confidence            35567777777777765422       333456666777777777766533322113445666666666655422 2223


Q ss_pred             cCCCCCCcEEEecCCccccccc--hhh-ccCCCCCeEecCCcccCC--cccccccCCCCCcEEEccCCccccc-cccccc
Q 048333          247 TGNFSSLKLLNLRSCGFWSKVP--HSI-GNFTRLQFLFLGFNNFSG--DLLGSIGNLRSLEVIYIAKCNFSGQ-ITSSLR  320 (413)
Q Consensus       247 l~~~~~L~~L~l~~~~~~~~~~--~~~-~~~~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~L~~~~~~~~-~~~~~~  320 (413)
                      +..+|.++.|+++.|.+.....  ... ..-+.+++++...|....  .....-.-+|++..+.+..|.+.+. ..+.+.
T Consensus       142 l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se  221 (418)
T KOG2982|consen  142 LDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSE  221 (418)
T ss_pred             hhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCC
Confidence            4455666666666663311000  000 011234444444443221  0011112357778888888877533 234556


Q ss_pred             CCCCCCEEECCCCcCcceechhHhhhcccCCCeeeccCccccccceeeecccccc---ccccceeee
Q 048333          321 NLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDT---TSQKIQYRG  384 (413)
Q Consensus       321 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~---~~~~L~~L~  384 (413)
                      .+|.+.-|+++.+++.++..++ .+.++++|+-|.++++++.+-  ..+..+..+   .+++++.|+
T Consensus       222 ~~p~~~~LnL~~~~idswasvD-~Ln~f~~l~dlRv~~~Pl~d~--l~~~err~llIaRL~~v~vLN  285 (418)
T KOG2982|consen  222 PFPSLSCLNLGANNIDSWASVD-ALNGFPQLVDLRVSENPLSDP--LRGGERRFLLIARLTKVQVLN  285 (418)
T ss_pred             CCCcchhhhhcccccccHHHHH-HHcCCchhheeeccCCccccc--ccCCcceEEEEeeccceEEec
Confidence            6788888999999999888877 899999999999999985331  222222222   566666665

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.84  E-value=1.3e-10  Score=103.62  Aligned_cols=314  Identities=19%  Similarity=0.196  Sum_probs=152.3

Q ss_pred             CCCCCCCCCCCcccceEEee----------------CCCCceEEEecCCCccccccCCccccccccccceeeccccCCCC
Q 048333           20 SWKPEEGSVDCYSWDVVHCN----------------KNTGHVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNS   83 (413)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~----------------~~~~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~   83 (413)
                      .|+..  ..|...|..+.-.                ...+.++.|+++|+.-.+..+.-....++|++++|.+.++....
T Consensus       101 ~~n~~--AlD~~~~q~idL~t~~rDv~g~VV~~~~~Rcgg~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iT  178 (483)
T KOG4341|consen  101 MWNKL--ALDGSCWQHIDLFTFQRDVDGGVVENMISRCGGFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKIT  178 (483)
T ss_pred             Hhhhh--hhccccceeeehhcchhcCCCcceehHhhhhccccccccccccccCCcchhhHHhhhCCchhhhhhhcceecc
Confidence            46654  6666666555421                12357899999998665544443356789999999999886332


Q ss_pred             CC----CCccccCcCccccCC------cchhhhhhcCCCCcEEEcCCccC-CC-CcCccccCCCCCcEEEccCCcccccc
Q 048333           84 SE----IPPEIINLSRLELQK------PSFENLFEKLSNLKTLNLGDVSI-DS-TIPHNIKNLSSLTFVSLRNCELQAMC  151 (413)
Q Consensus        84 ~~----~~~~~~~L~~L~l~~------~~i~~~~~~~~~L~~L~l~~~~~-~~-~~~~~~~~~~~L~~L~l~~~~l~~~~  151 (413)
                      +.    +.+...+++++.+..      ..+......|++|++|+++.|.. .+ .+...+.+++.++.+..++|.-....
T Consensus       179 d~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le  258 (483)
T KOG4341|consen  179 DSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELE  258 (483)
T ss_pred             HHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHH
Confidence            21    223445555555443      22233345677777777776642 22 22223445566666666665421110


Q ss_pred             hhhhhhcccCCCccccCCCCccEEECCCC-ccccccccccccccccccccCCCCccEEeCCCCcC-CCcchhhh-hCCCC
Q 048333          152 SFFLIQISGRIPSSLGNLSKLLHLDLSLN-ELQGEAASFRCFGELPISMGNLGSLKELDLSQNGF-FGELPTSI-RNLFS  228 (413)
Q Consensus       152 ~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-~~~~~~~l-~~~~~  228 (413)
                               .+...-+.+..+..+++.++ .+++..        +...-..+..|+.+..+++.- .+....++ .++++
T Consensus       259 ---------~l~~~~~~~~~i~~lnl~~c~~lTD~~--------~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~  321 (483)
T KOG4341|consen  259 ---------ALLKAAAYCLEILKLNLQHCNQLTDED--------LWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHN  321 (483)
T ss_pred             ---------HHHHHhccChHhhccchhhhccccchH--------HHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCc
Confidence                     00011123344555554444 344331        111223455666666665543 22222222 34566


Q ss_pred             CCEEEccCCcC-cccCCcc-cCCCCCCcEEEecCCcccc--ccchhhccCCCCCeEecCCccc-CCcccccc----cCCC
Q 048333          229 LEKLDLSFNKL-SGEFPWS-TGNFSSLKLLNLRSCGFWS--KVPHSIGNFTRLQFLFLGFNNF-SGDLLGSI----GNLR  299 (413)
Q Consensus       229 L~~L~l~~~~~-~~~~~~~-l~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~l----~~~~  299 (413)
                      |+.+.+..+.. +...... -.+++.|+.+++.++....  .+.+.-.+++.|+.+.+++|.. ++.....+    ....
T Consensus       322 L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~  401 (483)
T KOG4341|consen  322 LQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLE  401 (483)
T ss_pred             eEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcccccc
Confidence            77776666642 2111111 1345666666666664321  1223334556666666666643 22212222    1234


Q ss_pred             CCcEEEccCCccc-ccccccccCCCCCCEEECCCCcCcceechhHhhhcccCCC
Q 048333          300 SLEVIYIAKCNFS-GQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLE  352 (413)
Q Consensus       300 ~L~~L~L~~~~~~-~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~  352 (413)
                      .++.+.++++..+ +..-+.+..|++|+.+++-++......++......+|+++
T Consensus       402 ~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~  455 (483)
T KOG4341|consen  402 GLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIK  455 (483)
T ss_pred             ccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccce
Confidence            5555555555543 2233344455555555555554333333222334444444

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.81  E-value=7.7e-10  Score=94.52  Aligned_cols=226  Identities=19%  Similarity=0.182  Sum_probs=137.6

Q ss_pred             CCcEEEcCCccCCCCcC-ccc-cCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCccccccccc
Q 048333          112 NLKTLNLGDVSIDSTIP-HNI-KNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASF  189 (413)
Q Consensus       112 ~L~~L~l~~~~~~~~~~-~~~-~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~  189 (413)
                      -++.+.+.++.+..... ..+ +.+..++++++.+|.+++.         +.+...+.++|+|+.|+++.|.+.....  
T Consensus        46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdW---------seI~~ile~lP~l~~LNls~N~L~s~I~--  114 (418)
T KOG2982|consen   46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDW---------SEIGAILEQLPALTTLNLSCNSLSSDIK--  114 (418)
T ss_pred             chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccH---------HHHHHHHhcCccceEeeccCCcCCCccc--
Confidence            44455566666643211 112 3567888999999988864         3344556788999999999998775421  


Q ss_pred             cccccccccccCCCCccEEeCCCCcCCCc-chhhhhCCCCCCEEEccCCcCccc--CCcccC-CCCCCcEEEecCCccc-
Q 048333          190 RCFGELPISMGNLGSLKELDLSQNGFFGE-LPTSIRNLFSLEKLDLSFNKLSGE--FPWSTG-NFSSLKLLNLRSCGFW-  264 (413)
Q Consensus       190 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~--~~~~l~-~~~~L~~L~l~~~~~~-  264 (413)
                          .+|   ....+|+.|-+.+.++.-. ....+..+|.++.|.++.|.....  ...... .-+.+.+++..+|... 
T Consensus       115 ----~lp---~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~  187 (418)
T KOG2982|consen  115 ----SLP---LPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQL  187 (418)
T ss_pred             ----cCc---ccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHH
Confidence                222   2346788888888777532 334567788888888888744311  111111 1246677777777541 


Q ss_pred             -cccchhhccCCCCCeEecCCcccCCc-ccccccCCCCCcEEEccCCccccc-ccccccCCCCCCEEECCCCcCcceech
Q 048333          265 -SKVPHSIGNFTRLQFLFLGFNNFSGD-LLGSIGNLRSLEVIYIAKCNFSGQ-ITSSLRNLTQLVVLDMAQNSYGGTVEL  341 (413)
Q Consensus       265 -~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~L~~~~~~~~-~~~~~~~~~~L~~L~l~~n~~~~~~~~  341 (413)
                       ...-..-+.++++..+.+..|.+... .-......|.+.-|+|+.+++.+. -...+.++++|..|.++++.+.+...-
T Consensus       188 w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~  267 (418)
T KOG2982|consen  188 WLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRG  267 (418)
T ss_pred             HHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccC
Confidence             11111224467788888888866532 223445577777888888888532 234667788899999988887632210


Q ss_pred             ----hHhhhcccCCCeee
Q 048333          342 ----DVLLTSWKNLEALD  355 (413)
Q Consensus       342 ----~~~~~~~~~L~~L~  355 (413)
                          ...++.+++++.|+
T Consensus       268 ~err~llIaRL~~v~vLN  285 (418)
T KOG2982|consen  268 GERRFLLIARLTKVQVLN  285 (418)
T ss_pred             CcceEEEEeeccceEEec
Confidence                01344566666554

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.81  E-value=2.1e-10  Score=106.03  Aligned_cols=169  Identities=29%  Similarity=0.384  Sum_probs=74.4

Q ss_pred             EEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCcccccccccccccc
Q 048333          115 TLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGE  194 (413)
Q Consensus       115 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~  194 (413)
                      ..+++.|++. ++|..+..+..|+.+.++.|.+.            .+|..+.++..|.+++++.|+++.          
T Consensus        79 ~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r------------~ip~~i~~L~~lt~l~ls~NqlS~----------  135 (722)
T KOG0532|consen   79 FADLSRNRFS-ELPEEACAFVSLESLILYHNCIR------------TIPEAICNLEALTFLDLSSNQLSH----------  135 (722)
T ss_pred             hhhccccccc-cCchHHHHHHHHHHHHHHhccce------------ecchhhhhhhHHHHhhhccchhhc----------
Confidence            3344444443 34444444444555555544443            344444455555555555555441          


Q ss_pred             ccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccC
Q 048333          195 LPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNF  274 (413)
Q Consensus       195 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~  274 (413)
                      +|..+..++ |+.|-+++|++. .+|..++..+.|..|+.+.|.+. .+|..+..+.+|+.|.+..|.+ ..+|..+..+
T Consensus       136 lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l-~~lp~El~~L  211 (722)
T KOG0532|consen  136 LPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHL-EDLPEELCSL  211 (722)
T ss_pred             CChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhh-hhCCHHHhCC
Confidence            233333322 444444444443 34444444444444444444443 2333344444444444444443 2233333322


Q ss_pred             CCCCeEecCCcccCCcccccccCCCCCcEEEccCCccc
Q 048333          275 TRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFS  312 (413)
Q Consensus       275 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~  312 (413)
                       .|..||++.|.+. .+|..|..+..|++|-|.+|.+.
T Consensus       212 -pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq  247 (722)
T KOG0532|consen  212 -PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ  247 (722)
T ss_pred             -ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC
Confidence             2444444444444 34444444444444444444443

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.81  E-value=1.8e-10  Score=98.28  Aligned_cols=195  Identities=18%  Similarity=0.194  Sum_probs=127.5

Q ss_pred             CccEEeCCCCcCCC-cchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCc-ccc-ccchhhccCCCCCeE
Q 048333          204 SLKELDLSQNGFFG-ELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCG-FWS-KVPHSIGNFTRLQFL  280 (413)
Q Consensus       204 ~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~-~~~~~~~~~~~L~~L  280 (413)
                      .++.+|++...++. ..-..+++|.+|+.|.+.++.+.+.+...+..-..|+.+++++|. ++. .....+..++.|..|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            47778887766642 233457778888888888888876666667777888888888873 322 223346788889999


Q ss_pred             ecCCcccCCcccc-cccC-CCCCcEEEccCCccc---ccccccccCCCCCCEEECCCCcCcceechhHhhhcccCCCeee
Q 048333          281 FLGFNNFSGDLLG-SIGN-LRSLEVIYIAKCNFS---GQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALD  355 (413)
Q Consensus       281 ~l~~~~~~~~~~~-~l~~-~~~L~~L~L~~~~~~---~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~  355 (413)
                      +++.|.+..+... ++.. -++|..|+++|+.-.   ..+.-....||+|..||+++|....... ...+..++.|++|.
T Consensus       266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~-~~~~~kf~~L~~lS  344 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDC-FQEFFKFNYLQHLS  344 (419)
T ss_pred             CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchH-HHHHHhcchheeee
Confidence            9998876543221 1222 468888999887431   1223334579999999999987665544 33778889999999


Q ss_pred             ccCccccccceeeecccccc-ccccceeeeccCCCCC-CcchHhhcCCCCc
Q 048333          356 ISLNRSSVLTKATFDATTDT-TSQKIQYRGLRSCNLT-KFPNFLENQNHLV  404 (413)
Q Consensus       356 l~~~~i~~l~~~~~~~~~~~-~~~~L~~L~l~~~~l~-~l~~~~~~l~~L~  404 (413)
                      ++.|..     +..+....+ ..|+|.+|++.+|-=. ...-....+++|+
T Consensus       345 lsRCY~-----i~p~~~~~l~s~psl~yLdv~g~vsdt~mel~~e~~~~lk  390 (419)
T KOG2120|consen  345 LSRCYD-----IIPETLLELNSKPSLVYLDVFGCVSDTTMELLKEMLSHLK  390 (419)
T ss_pred             hhhhcC-----CChHHeeeeccCcceEEEEeccccCchHHHHHHHhCcccc
Confidence            999872     222222223 6788999998887433 2222233455554

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.75  E-value=2.5e-10  Score=97.47  Aligned_cols=179  Identities=22%  Similarity=0.188  Sum_probs=92.2

Q ss_pred             CcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCccccccccccccccccccccCCCCccEEeCCCCcCC
Q 048333          137 LTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFF  216 (413)
Q Consensus       137 L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  216 (413)
                      |++|++++..++.          ..+-..+..|.+|+.|.+.++++.+.         +...++...+|+.|+++.+.-.
T Consensus       187 lq~lDLS~s~it~----------stl~~iLs~C~kLk~lSlEg~~LdD~---------I~~~iAkN~~L~~lnlsm~sG~  247 (419)
T KOG2120|consen  187 LQHLDLSNSVITV----------STLHGILSQCSKLKNLSLEGLRLDDP---------IVNTIAKNSNLVRLNLSMCSGF  247 (419)
T ss_pred             hHHhhcchhheeH----------HHHHHHHHHHHhhhhccccccccCcH---------HHHHHhccccceeecccccccc
Confidence            6666666655543          12223345566666666666666654         3344555666666766665321


Q ss_pred             Cc--chhhhhCCCCCCEEEccCCcCcccCCcc-c-CCCCCCcEEEecCCcc---ccccchhhccCCCCCeEecCCcc-cC
Q 048333          217 GE--LPTSIRNLFSLEKLDLSFNKLSGEFPWS-T-GNFSSLKLLNLRSCGF---WSKVPHSIGNFTRLQFLFLGFNN-FS  288 (413)
Q Consensus       217 ~~--~~~~l~~~~~L~~L~l~~~~~~~~~~~~-l-~~~~~L~~L~l~~~~~---~~~~~~~~~~~~~L~~L~l~~~~-~~  288 (413)
                      ..  ....+..|..|+.|++++|......... + ..-++|+.|+++|+.-   ...+......+++|.+|++++|. +.
T Consensus       248 t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~  327 (419)
T KOG2120|consen  248 TENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLK  327 (419)
T ss_pred             chhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccC
Confidence            11  2234556666777777666554221111 1 1225566666666532   11222233556666666666663 33


Q ss_pred             CcccccccCCCCCcEEEccCCccc-ccccccccCCCCCCEEECCCCc
Q 048333          289 GDLLGSIGNLRSLEVIYIAKCNFS-GQITSSLRNLTQLVVLDMAQNS  334 (413)
Q Consensus       289 ~~~~~~l~~~~~L~~L~L~~~~~~-~~~~~~~~~~~~L~~L~l~~n~  334 (413)
                      ......+-+++.|+.|.+++|-.. ....-.+...|.|.+|++.++-
T Consensus       328 ~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  328 NDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             chHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence            333344445666666666666532 1112233445666666666553

>PLN03150 hypothetical protein; Provisional

Probab=98.66  E-value=7.6e-08  Score=95.69  Aligned_cols=108  Identities=35%  Similarity=0.490  Sum_probs=88.8

Q ss_pred             CCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCccccccccccccccccccccCCCCccEEeCCCCcC
Q 048333          136 SLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGF  215 (413)
Q Consensus       136 ~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  215 (413)
                      .++.|+++++.+.           +.+|..+..+++|+.|++++|.+.+.         +|..+..+++|+.|++++|.+
T Consensus       419 ~v~~L~L~~n~L~-----------g~ip~~i~~L~~L~~L~Ls~N~l~g~---------iP~~~~~l~~L~~LdLs~N~l  478 (623)
T PLN03150        419 FIDGLGLDNQGLR-----------GFIPNDISKLRHLQSINLSGNSIRGN---------IPPSLGSITSLEVLDLSYNSF  478 (623)
T ss_pred             EEEEEECCCCCcc-----------ccCCHHHhCCCCCCEEECCCCcccCc---------CChHHhCCCCCCEEECCCCCC
Confidence            3778888888876           67788888899999999999988753         677788899999999999998


Q ss_pred             CCcchhhhhCCCCCCEEEccCCcCcccCCcccCCC-CCCcEEEecCCcc
Q 048333          216 FGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNF-SSLKLLNLRSCGF  263 (413)
Q Consensus       216 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~  263 (413)
                      ...+|..+..+++|+.|++++|.+.+.+|..+... .++..+++.+|..
T Consensus       479 sg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~  527 (623)
T PLN03150        479 NGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAG  527 (623)
T ss_pred             CCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCcc
Confidence            88888889999999999999998887788776543 4567788877754

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.65  E-value=3.5e-09  Score=100.47  Aligned_cols=174  Identities=28%  Similarity=0.321  Sum_probs=89.1

Q ss_pred             hhcCCCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCcccccc
Q 048333          107 FEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEA  186 (413)
Q Consensus       107 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~  186 (413)
                      +..+.+|+.|++.+|.+.. +...+..+++|++|++++|.|+.+             ..+..++.|+.|++.+|.+... 
T Consensus        91 l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i-------------~~l~~l~~L~~L~l~~N~i~~~-  155 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKL-------------EGLSTLTLLKELNLSGNLISDI-  155 (414)
T ss_pred             cccccceeeeeccccchhh-cccchhhhhcchheeccccccccc-------------cchhhccchhhheeccCcchhc-
Confidence            4456677777777776653 222255567777777777776542             3344555577777777776643 


Q ss_pred             ccccccccccccccCCCCccEEeCCCCcCCCcch-hhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCcccc
Q 048333          187 ASFRCFGELPISMGNLGSLKELDLSQNGFFGELP-TSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWS  265 (413)
Q Consensus       187 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~  265 (413)
                                ..+..++.|+.+++++|.+...-+ . +..+.+++.+.+.+|.+...  ..+..+..+..+.+..+.+..
T Consensus       156 ----------~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~  222 (414)
T KOG0531|consen  156 ----------SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKISK  222 (414)
T ss_pred             ----------cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhccccccee
Confidence                      234446666777777766643222 1 35566666666666655311  112222333333444443321


Q ss_pred             ccchhhccCC--CCCeEecCCcccCCcccccccCCCCCcEEEccCCcc
Q 048333          266 KVPHSIGNFT--RLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNF  311 (413)
Q Consensus       266 ~~~~~~~~~~--~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~  311 (413)
                      ..+  +....  +|+.+.++++++... +..+..+..+..+++..+.+
T Consensus       223 ~~~--l~~~~~~~L~~l~l~~n~i~~~-~~~~~~~~~l~~l~~~~n~~  267 (414)
T KOG0531|consen  223 LEG--LNELVMLHLRELYLSGNRISRS-PEGLENLKNLPVLDLSSNRI  267 (414)
T ss_pred             ccC--cccchhHHHHHHhcccCccccc-cccccccccccccchhhccc
Confidence            111  11111  255555655555421 13344455555555555554

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.64  E-value=2e-09  Score=90.81  Aligned_cols=226  Identities=22%  Similarity=0.229  Sum_probs=143.3

Q ss_pred             CCceEEEecCCCccccccC--CccccccccccceeeccccCCCCCCCCccc-cCcCccccCCcchhhhhhcCCCCcEEEc
Q 048333           42 TGHVIKLNLSHGCLFGSIN--SSSSLFKLVHLKWLNLALNDFNSSEIPPEI-INLSRLELQKPSFENLFEKLSNLKTLNL  118 (413)
Q Consensus        42 ~~~l~~L~l~~~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~L~~L~l~~~~i~~~~~~~~~L~~L~l  118 (413)
                      ...++.++|++|.+...-.  .++.|..-++|+..+++.- +++. ..+.+ .+|+       .+.+++-+||+|+.+++
T Consensus        29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr-~kde~~~~L~-------~Ll~aLlkcp~l~~v~L   99 (388)
T COG5238          29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGR-DKDELYSNLV-------MLLKALLKCPRLQKVDL   99 (388)
T ss_pred             hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcc-cHHHHHHHHH-------HHHHHHhcCCcceeeec
Confidence            4578899999998864321  1225666777888877653 2221 11111 1221       12445778999999999


Q ss_pred             CCccCCCCcCc----cccCCCCCcEEEccCCcccccchhhhhhcccCCC---------ccccCCCCccEEECCCCccccc
Q 048333          119 GDVSIDSTIPH----NIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIP---------SSLGNLSKLLHLDLSLNELQGE  185 (413)
Q Consensus       119 ~~~~~~~~~~~----~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~---------~~l~~~~~L~~L~l~~~~i~~~  185 (413)
                      |+|.+....|.    .++.-..|.+|.+++|.+.....       +.+.         .-...-|.|+.+....|++.+.
T Consensus       100 SDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG-------~rigkal~~la~nKKaa~kp~Le~vicgrNRleng  172 (388)
T COG5238         100 SDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAG-------GRIGKALFHLAYNKKAADKPKLEVVICGRNRLENG  172 (388)
T ss_pred             cccccCcccchHHHHHHhcCCCceeEEeecCCCCccch-------hHHHHHHHHHHHHhhhccCCCceEEEeccchhccC
Confidence            99998765443    45667899999999998753211       1111         1234568899999999988754


Q ss_pred             cccccccccccccccCCCCccEEeCCCCcCCCc-----chhhhhCCCCCCEEEccCCcCccc----CCcccCCCCCCcEE
Q 048333          186 AASFRCFGELPISMGNLGSLKELDLSQNGFFGE-----LPTSIRNLFSLEKLDLSFNKLSGE----FPWSTGNFSSLKLL  256 (413)
Q Consensus       186 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-----~~~~l~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L  256 (413)
                      ...     .+...+.....|+++.+.+|.+...     +...+..+.+|+.|++..|.++..    +...+..++.|+.|
T Consensus       173 s~~-----~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL  247 (388)
T COG5238         173 SKE-----LSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLREL  247 (388)
T ss_pred             cHH-----HHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhc
Confidence            321     1233455557899999999987532     223455678899999998877632    33445667778888


Q ss_pred             EecCCccccccchh-h-----ccCCCCCeEecCCcccC
Q 048333          257 NLRSCGFWSKVPHS-I-----GNFTRLQFLFLGFNNFS  288 (413)
Q Consensus       257 ~l~~~~~~~~~~~~-~-----~~~~~L~~L~l~~~~~~  288 (413)
                      .+.+|-+....... +     ...++|..|...+|.+.
T Consensus       248 ~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~  285 (388)
T COG5238         248 RLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERR  285 (388)
T ss_pred             cccchhhccccHHHHHHHhhhhcCCCccccccchhhhc
Confidence            88888664432221 1     22466777777776554

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.63  E-value=3.2e-08  Score=66.25  Aligned_cols=61  Identities=34%  Similarity=0.504  Sum_probs=43.2

Q ss_pred             CCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCcc
Q 048333          111 SNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNEL  182 (413)
Q Consensus       111 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i  182 (413)
                      |+|++|++++|.+....+..|..+++|++|++++|.+..           .-+..|.++++|++|++++|++
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~-----------i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTS-----------IPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESE-----------EETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCc-----------cCHHHHcCCCCCCEEeCcCCcC
Confidence            467778888877775555667777888888888777763           2345677777777777777764

...

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.60  E-value=9.5e-10  Score=98.19  Aligned_cols=141  Identities=18%  Similarity=0.156  Sum_probs=72.2

Q ss_pred             ccCCCCCeEecCCccc-CCccccccc-CCCCCcEEEccCCcccccc-c-ccccCCCCCCEEECCCCcCcceechhHhhhc
Q 048333          272 GNFTRLQFLFLGFNNF-SGDLLGSIG-NLRSLEVIYIAKCNFSGQI-T-SSLRNLTQLVVLDMAQNSYGGTVELDVLLTS  347 (413)
Q Consensus       272 ~~~~~L~~L~l~~~~~-~~~~~~~l~-~~~~L~~L~L~~~~~~~~~-~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~  347 (413)
                      ..+..|+.+..+++.. .+.....++ +.++|+.+-+.+|+.-+.. . ..-.+++.|+.+++.++....+..+...-.+
T Consensus       291 ~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~  370 (483)
T KOG4341|consen  291 CGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRN  370 (483)
T ss_pred             hhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccC
Confidence            3345566666665532 222222332 3566777777666532111 1 1223466677777766655433333334556


Q ss_pred             ccCCCeeeccCccccccceeeeccccccccccceeeeccCCCCC--CcchHhhcCCCCcEEeCCCCC
Q 048333          348 WKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLT--KFPNFLENQNHLVILNLSDNR  412 (413)
Q Consensus       348 ~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~--~l~~~~~~l~~L~~L~l~~n~  412 (413)
                      |+.|+.+.+++|...+.+....-....-....|+.+.+++|..+  +....+..|++|+.+++-+|+
T Consensus       371 C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q  437 (483)
T KOG4341|consen  371 CPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ  437 (483)
T ss_pred             CchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence            67777777776663221100000000014456667777777655  445566667777777766654

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.57  E-value=5.9e-09  Score=98.92  Aligned_cols=217  Identities=29%  Similarity=0.339  Sum_probs=145.9

Q ss_pred             cCCCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCcccccccc
Q 048333          109 KLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAAS  188 (413)
Q Consensus       109 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~  188 (413)
                      .+..++.+.++.+.+.. +-..+..+++|..|++.++.+..            +...+..+++|++|++++|.|++.   
T Consensus        70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~------------i~~~l~~~~~L~~L~ls~N~I~~i---  133 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEK------------IENLLSSLVNLQVLDLSFNKITKL---  133 (414)
T ss_pred             HhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhh------------cccchhhhhcchheeccccccccc---
Confidence            45666666788777764 33457778999999999999873            323377789999999999999865   


Q ss_pred             ccccccccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCC-cccCCCCCCcEEEecCCcccccc
Q 048333          189 FRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFP-WSTGNFSSLKLLNLRSCGFWSKV  267 (413)
Q Consensus       189 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~  267 (413)
                              ..+..++.|+.|++++|.+.. + ..+..++.|+.+++++|.+....+ . ...+..++.+.+.++.+... 
T Consensus       134 --------~~l~~l~~L~~L~l~~N~i~~-~-~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i-  201 (414)
T KOG0531|consen  134 --------EGLSTLTLLKELNLSGNLISD-I-SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI-  201 (414)
T ss_pred             --------cchhhccchhhheeccCcchh-c-cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc-
Confidence                    346677779999999998853 2 345568889999999998874433 2 45677888888888876322 


Q ss_pred             chhhccCCCCCeEecCCcccCCcccccccCCCC--CcEEEccCCcccccccccccCCCCCCEEECCCCcCcceechhHhh
Q 048333          268 PHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRS--LEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLL  345 (413)
Q Consensus       268 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~--L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~  345 (413)
                       ..+..+..+..+++..|.+...  ..+...+.  |+.+.+.++++. ..+..+..+..+..+++.++.+...-.    +
T Consensus       202 -~~~~~~~~l~~~~l~~n~i~~~--~~l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~~~----~  273 (414)
T KOG0531|consen  202 -EGLDLLKKLVLLSLLDNKISKL--EGLNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNLEG----L  273 (414)
T ss_pred             -cchHHHHHHHHhhcccccceec--cCcccchhHHHHHHhcccCccc-cccccccccccccccchhhcccccccc----c
Confidence             2233344455557777766532  22222333  788888888886 333555677888888888887763222    3


Q ss_pred             hcccCCCeeeccCccc
Q 048333          346 TSWKNLEALDISLNRS  361 (413)
Q Consensus       346 ~~~~~L~~L~l~~~~i  361 (413)
                      ...+.+..+....+++
T Consensus       274 ~~~~~~~~~~~~~~~~  289 (414)
T KOG0531|consen  274 ERLPKLSELWLNDNKL  289 (414)
T ss_pred             cccchHHHhccCcchh
Confidence            3444555555555554

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.56  E-value=6.8e-08  Score=64.63  Aligned_cols=59  Identities=27%  Similarity=0.377  Sum_probs=26.8

Q ss_pred             CCcEEEccCCcccccccccccCCCCCCEEECCCCcCcceechhHhhhcccCCCeeeccCcc
Q 048333          300 SLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNR  360 (413)
Q Consensus       300 ~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~  360 (413)
                      +|+.|++++|.++...+..|..+++|++|++++|.+....+ . .+.++++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~-~-~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPP-D-AFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEET-T-TTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCH-H-HHcCCCCCCEEeCcCCc
Confidence            34444444444443333444444555555555444442222 2 44455555555555443

...

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.44  E-value=4.7e-08  Score=82.77  Aligned_cols=198  Identities=16%  Similarity=0.128  Sum_probs=90.5

Q ss_pred             cCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCccccccccc-cccccccccccCCCCccEEeC
Q 048333          132 KNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASF-RCFGELPISMGNLGSLKELDL  210 (413)
Q Consensus       132 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~-~~~~~~~~~~~~l~~L~~L~l  210 (413)
                      ..+..+..+++++|.+..-..       ..+...+.+-.+|+..++++-........+ ....-+...+.+|++|+.+++
T Consensus        27 ~~~d~~~evdLSGNtigtEA~-------e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~L   99 (388)
T COG5238          27 EMMDELVEVDLSGNTIGTEAM-------EELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDL   99 (388)
T ss_pred             HhhcceeEEeccCCcccHHHH-------HHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeec
Confidence            346667777777777653111       122333455566666666553221110000 000011223456666666666


Q ss_pred             CCCcCCCcchh----hhhCCCCCCEEEccCCcCcccCCcc-------------cCCCCCCcEEEecCCcccccc----ch
Q 048333          211 SQNGFFGELPT----SIRNLFSLEKLDLSFNKLSGEFPWS-------------TGNFSSLKLLNLRSCGFWSKV----PH  269 (413)
Q Consensus       211 ~~~~~~~~~~~----~l~~~~~L~~L~l~~~~~~~~~~~~-------------l~~~~~L~~L~l~~~~~~~~~----~~  269 (413)
                      +.|.+....|.    .+++-..|++|.+++|.+....-..             ...-|.|+++....|++-...    ..
T Consensus       100 SDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~  179 (388)
T COG5238         100 SDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAA  179 (388)
T ss_pred             cccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHH
Confidence            66665544433    2334455666666666553111111             112355566655555541110    11


Q ss_pred             hhccCCCCCeEecCCcccCCccccc-----ccCCCCCcEEEccCCccccc----ccccccCCCCCCEEECCCCcCc
Q 048333          270 SIGNFTRLQFLFLGFNNFSGDLLGS-----IGNLRSLEVIYIAKCNFSGQ----ITSSLRNLTQLVVLDMAQNSYG  336 (413)
Q Consensus       270 ~~~~~~~L~~L~l~~~~~~~~~~~~-----l~~~~~L~~L~L~~~~~~~~----~~~~~~~~~~L~~L~l~~n~~~  336 (413)
                      .+..-..|+.+.+..|.+.......     +..+.+|+.|++..|-++..    ...++...+.|+.|.+.+|-+.
T Consensus       180 ~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls  255 (388)
T COG5238         180 LLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLS  255 (388)
T ss_pred             HHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhc
Confidence            1111235566666666554332211     22355666666666555421    2233334445566666655554

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.36  E-value=3.3e-09  Score=101.04  Aligned_cols=179  Identities=21%  Similarity=0.223  Sum_probs=114.0

Q ss_pred             cccccCCCCccEEeCCCCcCCCcchhhhhCC-CCCCEEEccCCcCc----------ccCCcccCCCCCCcEEEecCCccc
Q 048333          196 PISMGNLGSLKELDLSQNGFFGELPTSIRNL-FSLEKLDLSFNKLS----------GEFPWSTGNFSSLKLLNLRSCGFW  264 (413)
Q Consensus       196 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~----------~~~~~~l~~~~~L~~L~l~~~~~~  264 (413)
                      |..+..++.|++|.+.++.+..  ..++..+ ..|++|.-. +...          +.+... ..+-.|.+.+.++|.+ 
T Consensus       102 pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC~-~Sl~Al~~v~ascggd~~ns-~~Wn~L~~a~fsyN~L-  176 (1096)
T KOG1859|consen  102 PISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLICH-NSLDALRHVFASCGGDISNS-PVWNKLATASFSYNRL-  176 (1096)
T ss_pred             CceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhhh-ccHHHHHHHHHHhccccccc-hhhhhHhhhhcchhhH-
Confidence            5566778889999999988853  2223222 234444221 1111          011111 1224567777777766 


Q ss_pred             cccchhhccCCCCCeEecCCcccCCcccccccCCCCCcEEEccCCcccccccc-cccCCCCCCEEECCCCcCcceechhH
Q 048333          265 SKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITS-SLRNLTQLVVLDMAQNSYGGTVELDV  343 (413)
Q Consensus       265 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~-~~~~~~~L~~L~l~~n~~~~~~~~~~  343 (413)
                      ......+.-++.|++|++++|.+.+.  ..+..++.|+.|+|+.|.+. .+|. ....|. |+.|++++|.++...    
T Consensus       177 ~~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~tL~----  248 (1096)
T KOG1859|consen  177 VLMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALTTLR----  248 (1096)
T ss_pred             HhHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhh-heeeeecccHHHhhh----
Confidence            34455567778889999999988752  36778889999999998886 3332 233455 889999999887433    


Q ss_pred             hhhcccCCCeeeccCccccccceeeeccccccccccceeeeccCCCCC
Q 048333          344 LLTSWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLT  391 (413)
Q Consensus       344 ~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~  391 (413)
                      .+.++.+|+.||+++|-+..-.+.    ...+.+..|+.|++.+|.+-
T Consensus       249 gie~LksL~~LDlsyNll~~hseL----~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  249 GIENLKSLYGLDLSYNLLSEHSEL----EPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             hHHhhhhhhccchhHhhhhcchhh----hHHHHHHHHHHHhhcCCccc
Confidence            456788889999998875432211    11125677888899988876

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.34  E-value=7.9e-09  Score=98.54  Aligned_cols=128  Identities=23%  Similarity=0.213  Sum_probs=88.3

Q ss_pred             CCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccCCCCCeEecCCcccCCcccccccCCCCCcEEEc
Q 048333          227 FSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYI  306 (413)
Q Consensus       227 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L  306 (413)
                      ..|...+.++|.+. .+...+.-++.++.|++++|++....  .+..+++|++|++++|.+....-.....+ .|..|++
T Consensus       164 n~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~l  239 (1096)
T KOG1859|consen  164 NKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNL  239 (1096)
T ss_pred             hhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhh-hheeeee
Confidence            35666667777665 44455566677888888888774332  67788888888888888764222222223 4888888


Q ss_pred             cCCcccccccccccCCCCCCEEECCCCcCcceechhHhhhcccCCCeeeccCccc
Q 048333          307 AKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRS  361 (413)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~i  361 (413)
                      ++|.++..  ..+.++.+|+.||+++|-+.+.-.+. .+..+..|+.|++.||++
T Consensus       240 rnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~-pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  240 RNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELE-PLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             cccHHHhh--hhHHhhhhhhccchhHhhhhcchhhh-HHHHHHHHHHHhhcCCcc
Confidence            88887632  24467888888899888887655533 677778888889998884

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.13  E-value=2.6e-06  Score=52.18  Aligned_cols=35  Identities=34%  Similarity=0.439  Sum_probs=21.1

Q ss_pred             cceeeeccCCCCCCcchHhhcCCCCcEEeCCCCCC
Q 048333          379 KIQYRGLRSCNLTKFPNFLENQNHLVILNLSDNRI  413 (413)
Q Consensus       379 ~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i  413 (413)
                      +|++|++++|+|+.+|..++++++|+.|++++|+|
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i   36 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPI   36 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCC
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCC
Confidence            46666666666666666566666666666666654

...

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.12  E-value=6.5e-07  Score=89.01  Aligned_cols=132  Identities=25%  Similarity=0.282  Sum_probs=78.6

Q ss_pred             CCCCEEEccCCcCc-ccCCccc-CCCCCCcEEEecCCccc-cccchhhccCCCCCeEecCCcccCCcccccccCCCCCcE
Q 048333          227 FSLEKLDLSFNKLS-GEFPWST-GNFSSLKLLNLRSCGFW-SKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEV  303 (413)
Q Consensus       227 ~~L~~L~l~~~~~~-~~~~~~l-~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~  303 (413)
                      .+|++|++++.... ..-+..+ ..+|+|+.|.+.+-.+. ++......++|+|.+||++++++..  ...++.+++|+.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n--l~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN--LSGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccC--cHHHhccccHHH
Confidence            46788888764321 1111112 24678888888776552 2334455677788888888887764  255667777777


Q ss_pred             EEccCCcccc-cccccccCCCCCCEEECCCCcCcceechh----HhhhcccCCCeeeccCcc
Q 048333          304 IYIAKCNFSG-QITSSLRNLTQLVVLDMAQNSYGGTVELD----VLLTSWKNLEALDISLNR  360 (413)
Q Consensus       304 L~L~~~~~~~-~~~~~~~~~~~L~~L~l~~n~~~~~~~~~----~~~~~~~~L~~L~l~~~~  360 (413)
                      |.+.+-.+.. ..-..+..+++|+.||+|...........    ..-..+|.|+.||.|++.
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd  261 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD  261 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcc
Confidence            7777655542 22334556777888888776544322100    123346777777777766

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.05  E-value=1.9e-06  Score=85.79  Aligned_cols=111  Identities=20%  Similarity=0.231  Sum_probs=59.2

Q ss_pred             cCCCCcEEEcCCccCCC-CcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCccccccc
Q 048333          109 KLSNLKTLNLGDVSIDS-TIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAA  187 (413)
Q Consensus       109 ~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~  187 (413)
                      .+|.|++|.+++-.+.. .+.....++|+|..||+++++++.+             .+++++++|+.|.+.+-.+.... 
T Consensus       146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-------------~GIS~LknLq~L~mrnLe~e~~~-  211 (699)
T KOG3665|consen  146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-------------SGISRLKNLQVLSMRNLEFESYQ-  211 (699)
T ss_pred             hCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-------------HHHhccccHHHHhccCCCCCchh-
Confidence            46777777776655432 2333445667777777777766532             44566666666666665554310 


Q ss_pred             cccccccccccccCCCCccEEeCCCCcCCCc--ch----hhhhCCCCCCEEEccCCcCc
Q 048333          188 SFRCFGELPISMGNLGSLKELDLSQNGFFGE--LP----TSIRNLFSLEKLDLSFNKLS  240 (413)
Q Consensus       188 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~----~~l~~~~~L~~L~l~~~~~~  240 (413)
                             --..+.++++|+.||+|.......  +.    +.-..+|.|+.|+.++..+.
T Consensus       212 -------~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~  263 (699)
T KOG3665|consen  212 -------DLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN  263 (699)
T ss_pred             -------hHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence                   112344566666777665543211  11    11223556666666655543

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.84  E-value=2.6e-05  Score=47.76  Aligned_cols=39  Identities=28%  Similarity=0.521  Sum_probs=28.4

Q ss_pred             CCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCccccc
Q 048333          111 SNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAM  150 (413)
Q Consensus       111 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~  150 (413)
                      ++|++|++++|+++ .+|..+.+|++|++|++++|+++++
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~i   39 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISDI   39 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCCC
Confidence            46888888888887 4555678888888888888887643

...

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.69  E-value=6.3e-05  Score=61.40  Aligned_cols=108  Identities=15%  Similarity=0.133  Sum_probs=65.2

Q ss_pred             CCCcEEEecCCccccccchhhccCCCCCeEecCCcccCCcccccccCCCCCcEEEccCCccccc-ccccccCCCCCCEEE
Q 048333          251 SSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQ-ITSSLRNLTQLVVLD  329 (413)
Q Consensus       251 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~-~~~~~~~~~~L~~L~  329 (413)
                      .....+++++|.+..  ...|..+++|.+|.+..|++++..+..-..+|+|..|.+.+|.+... .-..+..||.|++|.
T Consensus        42 d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt  119 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT  119 (233)
T ss_pred             cccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence            345667777776521  23466677777777777777754444444467777777777776521 123345677777777


Q ss_pred             CCCCcCcceech-hHhhhcccCCCeeeccCcc
Q 048333          330 MAQNSYGGTVEL-DVLLTSWKNLEALDISLNR  360 (413)
Q Consensus       330 l~~n~~~~~~~~-~~~~~~~~~L~~L~l~~~~  360 (413)
                      +-+|.+.....- ...+-.+|+|++||+.+-.
T Consensus       120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt  151 (233)
T KOG1644|consen  120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT  151 (233)
T ss_pred             ecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence            777776632211 1145566777777777644

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.68  E-value=8.7e-06  Score=79.25  Aligned_cols=35  Identities=31%  Similarity=0.333  Sum_probs=20.8

Q ss_pred             CCEEECCCCcCcceechhHhhhc-ccCCCeeeccCcc
Q 048333          325 LVVLDMAQNSYGGTVELDVLLTS-WKNLEALDISLNR  360 (413)
Q Consensus       325 L~~L~l~~n~~~~~~~~~~~~~~-~~~L~~L~l~~~~  360 (413)
                      ++.|+++.+.......+. .... +..++.+++.++.
T Consensus       403 l~~L~l~~~~~~t~~~l~-~~~~~~~~~~~l~~~~~~  438 (482)
T KOG1947|consen  403 LRVLNLSDCRLVTDKGLR-CLADSCSNLKDLDLSGCR  438 (482)
T ss_pred             cceEecccCccccccchH-HHhhhhhccccCCccCcc
Confidence            677777777655444333 2222 6667777777766

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.65  E-value=0.0001  Score=60.23  Aligned_cols=68  Identities=28%  Similarity=0.303  Sum_probs=41.7

Q ss_pred             hhcCCCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCcccc
Q 048333          107 FEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQG  184 (413)
Q Consensus       107 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~  184 (413)
                      |..++.|.+|.+++|+++..-|..-..+++|.+|.+.+|.+..+         +.+ .-+..+|+|++|.+-+|++..
T Consensus        60 lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l---------~dl-~pLa~~p~L~~Ltll~Npv~~  127 (233)
T KOG1644|consen   60 LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQEL---------GDL-DPLASCPKLEYLTLLGNPVEH  127 (233)
T ss_pred             CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhh---------hhc-chhccCCccceeeecCCchhc
Confidence            44566777777777777655554444556777777777776543         111 224566677777777766654

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.60  E-value=2.8e-06  Score=64.69  Aligned_cols=56  Identities=23%  Similarity=0.398  Sum_probs=25.9

Q ss_pred             CccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCC
Q 048333          204 SLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSC  261 (413)
Q Consensus       204 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~  261 (413)
                      .++.|++++|.+. .+|..+..++.|+.++++.|.+. ..|..+..+.++..|+..++
T Consensus        78 t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~n  133 (177)
T KOG4579|consen   78 TATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPEN  133 (177)
T ss_pred             hhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCC
Confidence            4445555555543 34444555555555555555443 33433333444444444443

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.58  E-value=0.00082  Score=62.19  Aligned_cols=136  Identities=24%  Similarity=0.344  Sum_probs=79.3

Q ss_pred             hhcCCCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCC-ccccc
Q 048333          107 FEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLN-ELQGE  185 (413)
Q Consensus       107 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~i~~~  185 (413)
                      +..++++++|++++|.+. .+|. +  -.+|++|.+++|.-.           ..+|..+.  ++|++|.+++| .+.  
T Consensus        48 ~~~~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nL-----------tsLP~~LP--~nLe~L~Ls~Cs~L~--  108 (426)
T PRK15386         48 IEEARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNL-----------TTLPGSIP--EGLEKLTVCHCPEIS--  108 (426)
T ss_pred             HHHhcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCc-----------ccCCchhh--hhhhheEccCccccc--
Confidence            455799999999999776 4553 1  246999999887533           23454443  58999999988 443  


Q ss_pred             cccccccccccccccCCCCccEEeCCCCcCCCcchhhhhCC-CCCCEEEccCCcCc--ccCCcccCCCCCCcEEEecCCc
Q 048333          186 AASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNL-FSLEKLDLSFNKLS--GEFPWSTGNFSSLKLLNLRSCG  262 (413)
Q Consensus       186 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~--~~~~~~l~~~~~L~~L~l~~~~  262 (413)
                              .+|      ..|+.|++..+....     +..+ ++|+.|.+.++...  ...+.  .-+++|++|.+++|.
T Consensus       109 --------sLP------~sLe~L~L~~n~~~~-----L~~LPssLk~L~I~~~n~~~~~~lp~--~LPsSLk~L~Is~c~  167 (426)
T PRK15386        109 --------GLP------ESVRSLEIKGSATDS-----IKNVPNGLTSLSINSYNPENQARIDN--LISPSLKTLSLTGCS  167 (426)
T ss_pred             --------ccc------cccceEEeCCCCCcc-----cccCcchHhheecccccccccccccc--ccCCcccEEEecCCC
Confidence                    234      346677776544321     1222 24666766433211  01111  122678888888776


Q ss_pred             cccccchhhccCCCCCeEecCCc
Q 048333          263 FWSKVPHSIGNFTRLQFLFLGFN  285 (413)
Q Consensus       263 ~~~~~~~~~~~~~~L~~L~l~~~  285 (413)
                      .. ..|..+.  .+|+.|.++.+
T Consensus       168 ~i-~LP~~LP--~SLk~L~ls~n  187 (426)
T PRK15386        168 NI-ILPEKLP--ESLQSITLHIE  187 (426)
T ss_pred             cc-cCccccc--ccCcEEEeccc
Confidence            42 2333222  57777777654

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.53  E-value=0.00043  Score=63.98  Aligned_cols=141  Identities=16%  Similarity=0.133  Sum_probs=88.8

Q ss_pred             hhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccCCCCCeEecCCcccCCcccccccCCCCCc
Q 048333          223 IRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLE  302 (413)
Q Consensus       223 l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~  302 (413)
                      +..+++++.|++++|.+. .+|.   -+++|+.|.+++|.-....|..+  .++|+.|.+++|.....+      .++|+
T Consensus        48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sL------P~sLe  115 (426)
T PRK15386         48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGL------PESVR  115 (426)
T ss_pred             HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccc------ccccc
Confidence            556789999999999776 4552   34579999999876555666544  368999999988422222      25688


Q ss_pred             EEEccCCcccccccccccCCCCCCEEECCCCcCcceechhHhhhcccCCCeeeccCccccccceeeecccccccccccee
Q 048333          303 VIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQY  382 (413)
Q Consensus       303 ~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~L~~  382 (413)
                      .|.+..+... .++   .-.++|+.|.+.++.........  ..-.++|++|++++|....++       .. ...+|+.
T Consensus       116 ~L~L~~n~~~-~L~---~LPssLk~L~I~~~n~~~~~~lp--~~LPsSLk~L~Is~c~~i~LP-------~~-LP~SLk~  181 (426)
T PRK15386        116 SLEIKGSATD-SIK---NVPNGLTSLSINSYNPENQARID--NLISPSLKTLSLTGCSNIILP-------EK-LPESLQS  181 (426)
T ss_pred             eEEeCCCCCc-ccc---cCcchHhheeccccccccccccc--cccCCcccEEEecCCCcccCc-------cc-ccccCcE
Confidence            8888765543 111   12246788888554321111100  012357999999998843221       11 2358999


Q ss_pred             eeccCCC
Q 048333          383 RGLRSCN  389 (413)
Q Consensus       383 L~l~~~~  389 (413)
                      |.++.+.
T Consensus       182 L~ls~n~  188 (426)
T PRK15386        182 ITLHIEQ  188 (426)
T ss_pred             EEecccc
Confidence            9998763

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.48  E-value=1.2e-05  Score=61.24  Aligned_cols=107  Identities=21%  Similarity=0.180  Sum_probs=69.1

Q ss_pred             CCCEEEccCCcCcc--cCCcccCCCCCCcEEEecCCccccccchhhccCCCCCeEecCCcccCCcccccccCCCCCcEEE
Q 048333          228 SLEKLDLSFNKLSG--EFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIY  305 (413)
Q Consensus       228 ~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~  305 (413)
                      .+..++++.|.+..  ..+..+....+|+..++++|.+....+..-..++.++.|++.+|.+. ..|..++.+|.|+.++
T Consensus        28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lN  106 (177)
T KOG4579|consen   28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLN  106 (177)
T ss_pred             HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcc
Confidence            35566777776541  12223345567777788888774444444455667788888888877 4555677788888888


Q ss_pred             ccCCcccccccccccCCCCCCEEECCCCcCc
Q 048333          306 IAKCNFSGQITSSLRNLTQLVVLDMAQNSYG  336 (413)
Q Consensus       306 L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~  336 (413)
                      ++.|.+. ..|..+..+.++..|+.-+|...
T Consensus       107 l~~N~l~-~~p~vi~~L~~l~~Lds~~na~~  136 (177)
T KOG4579|consen  107 LRFNPLN-AEPRVIAPLIKLDMLDSPENARA  136 (177)
T ss_pred             cccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence            8888776 34444445777777777777654

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.33  E-value=3.1e-05  Score=75.37  Aligned_cols=178  Identities=18%  Similarity=0.177  Sum_probs=97.2

Q ss_pred             CCCCCEEEccCCcCccc--CCcccCCCCCCcEEEecCC-ccccc----cchhhccCCCCCeEecCCcc-cCCcccccccC
Q 048333          226 LFSLEKLDLSFNKLSGE--FPWSTGNFSSLKLLNLRSC-GFWSK----VPHSIGNFTRLQFLFLGFNN-FSGDLLGSIGN  297 (413)
Q Consensus       226 ~~~L~~L~l~~~~~~~~--~~~~l~~~~~L~~L~l~~~-~~~~~----~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~  297 (413)
                      ++.|+.+.+..+.....  .......++.|+.|+++++ .....    .......+++|+.++++.+. +++.....++.
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~  266 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS  266 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence            45666666555532211  2223344566666666552 11111    11233445677777777776 55554444443


Q ss_pred             -CCCCcEEEccCCc-cccc-ccccccCCCCCCEEECCCCcCcceechhHhhhcccCCCeeeccCcc----ccccce----
Q 048333          298 -LRSLEVIYIAKCN-FSGQ-ITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNR----SSVLTK----  366 (413)
Q Consensus       298 -~~~L~~L~L~~~~-~~~~-~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~----i~~l~~----  366 (413)
                       ++.|+.|.+.+|. +++. +......++.|++|++++|.......+.....++++++.|.+....    ++....    
T Consensus       267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~~~  346 (482)
T KOG1947|consen  267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLSGLL  346 (482)
T ss_pred             hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHHHhh
Confidence             6788888877776 4533 3344456777888888877665333333345567776666554433    221110    


Q ss_pred             eee-cccccc---ccccceeeeccCCCCCCc--chHhhcCCCC
Q 048333          367 ATF-DATTDT---TSQKIQYRGLRSCNLTKF--PNFLENQNHL  403 (413)
Q Consensus       367 ~~~-~~~~~~---~~~~L~~L~l~~~~l~~l--~~~~~~l~~L  403 (413)
                      ... +....+   .++.++.+.+..+.....  ...+.+|+.|
T Consensus       347 ~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l  389 (482)
T KOG1947|consen  347 TLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNL  389 (482)
T ss_pred             ccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCccc
Confidence            000 111111   788899999998885532  3566777766

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.16  E-value=0.002  Score=50.23  Aligned_cols=10  Identities=30%  Similarity=0.487  Sum_probs=3.0

Q ss_pred             CCCCCCEEEc
Q 048333          225 NLFSLEKLDL  234 (413)
Q Consensus       225 ~~~~L~~L~l  234 (413)
                      .+.+|+.+.+
T Consensus        33 ~~~~l~~i~~   42 (129)
T PF13306_consen   33 NCTSLKSINF   42 (129)
T ss_dssp             T-TT-SEEEE
T ss_pred             cccccccccc
Confidence            3333333333

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.96  E-value=0.0039  Score=48.54  Aligned_cols=105  Identities=19%  Similarity=0.130  Sum_probs=36.7

Q ss_pred             hhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccCCCCCeEecCCcccCCcccccccCCCCCc
Q 048333          223 IRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLE  302 (413)
Q Consensus       223 l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~  302 (413)
                      +..+.+|+.+.+.. .+.......+..+.+|+.+.+... +.......|..+++++.+.+.. .+.......+..+++++
T Consensus         8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~   84 (129)
T PF13306_consen    8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK   84 (129)
T ss_dssp             TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred             HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccc
Confidence            44444555555442 222233334445555555555442 3222233344454555555543 22222233444455555


Q ss_pred             EEEccCCcccccccccccCCCCCCEEECCC
Q 048333          303 VIYIAKCNFSGQITSSLRNLTQLVVLDMAQ  332 (413)
Q Consensus       303 ~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~  332 (413)
                      .+.+..+ +.......+..+ .|+.+.+..
T Consensus        85 ~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   85 NIDIPSN-ITEIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             EEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred             ccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence            5555432 221223334444 455555443

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.83  E-value=0.00066  Score=57.92  Aligned_cols=63  Identities=22%  Similarity=0.278  Sum_probs=26.2

Q ss_pred             CCCCCcEEEccCC--cccccccccccCCCCCCEEECCCCcCcceechhHhhhcccCCCeeeccCcc
Q 048333          297 NLRSLEVIYIAKC--NFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNR  360 (413)
Q Consensus       297 ~~~~L~~L~L~~~--~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~  360 (413)
                      .+|+|+.|.++.|  .+.+.+......+|+|+++++++|.+.....+. .+..+++|..|++.+|.
T Consensus        63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~-pl~~l~nL~~Ldl~n~~  127 (260)
T KOG2739|consen   63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR-PLKELENLKSLDLFNCS  127 (260)
T ss_pred             CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc-hhhhhcchhhhhcccCC
Confidence            3445555555544  333333333333445555555554443211111 33344444444444444

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.76  E-value=0.00066  Score=57.93  Aligned_cols=110  Identities=21%  Similarity=0.227  Sum_probs=73.6

Q ss_pred             CCCCCcEEEecCCccccccchhhccCCCCCeEecCCc--ccCCcccccccCCCCCcEEEccCCcccc-cccccccCCCCC
Q 048333          249 NFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFN--NFSGDLLGSIGNLRSLEVIYIAKCNFSG-QITSSLRNLTQL  325 (413)
Q Consensus       249 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~--~~~~~~~~~l~~~~~L~~L~L~~~~~~~-~~~~~~~~~~~L  325 (413)
                      .+..|+.+.+.+++++.  ...+..+++|+.|.++.|  ++...+......+|+|+.+++++|++.. .....+..+.+|
T Consensus        41 ~~~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL  118 (260)
T KOG2739|consen   41 EFVELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENL  118 (260)
T ss_pred             cccchhhhhhhccceee--cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcch
Confidence            34556666666665532  234677889999999999  5544344444456999999999998862 122344567788


Q ss_pred             CEEECCCCcCcceech-hHhhhcccCCCeeeccCcc
Q 048333          326 VVLDMAQNSYGGTVEL-DVLLTSWKNLEALDISLNR  360 (413)
Q Consensus       326 ~~L~l~~n~~~~~~~~-~~~~~~~~~L~~L~l~~~~  360 (413)
                      ..|++.+|..+....- ...+.-+++|.+||-....
T Consensus       119 ~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~  154 (260)
T KOG2739|consen  119 KSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVD  154 (260)
T ss_pred             hhhhcccCCccccccHHHHHHHHhhhhccccccccC
Confidence            8999999877642211 2367778888888776654

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.58  E-value=0.00012  Score=62.72  Aligned_cols=39  Identities=26%  Similarity=0.248  Sum_probs=15.5

Q ss_pred             CCCCCCEEECCCCcCcceechhHhhhcccCCCeeeccCcc
Q 048333          321 NLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNR  360 (413)
Q Consensus       321 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~  360 (413)
                      .|.+|++|.|..|.|.+...+. -+.++|+|+.|-|..|+
T Consensus        61 rCtrLkElYLRkN~I~sldEL~-YLknlpsLr~LWL~ENP   99 (388)
T KOG2123|consen   61 RCTRLKELYLRKNCIESLDELE-YLKNLPSLRTLWLDENP   99 (388)
T ss_pred             HHHHHHHHHHHhcccccHHHHH-HHhcCchhhhHhhccCC
Confidence            3444444444444443322222 33444444444444433

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.15  E-value=0.00057  Score=58.80  Aligned_cols=100  Identities=16%  Similarity=0.138  Sum_probs=76.0

Q ss_pred             CCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcceechhHhhhcccCCCeeeccCccccccceeeecccccccc
Q 048333          298 LRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDTTS  377 (413)
Q Consensus       298 ~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~  377 (413)
                      +.+.+.|+++||.+.+.  .....++.|+.|.|+-|.|++..    .+..|..|++|+|..|.|.+++++.-    .-.+
T Consensus        18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~----pl~rCtrLkElYLRkN~I~sldEL~Y----Lknl   87 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLA----PLQRCTRLKELYLRKNCIESLDELEY----LKNL   87 (388)
T ss_pred             HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccch----hHHHHHHHHHHHHHhcccccHHHHHH----HhcC
Confidence            45778899999999742  34467899999999999998544    46789999999999999877654321    1178


Q ss_pred             ccceeeeccCCCCC--C----cchHhhcCCCCcEEe
Q 048333          378 QKIQYRGLRSCNLT--K----FPNFLENQNHLVILN  407 (413)
Q Consensus       378 ~~L~~L~l~~~~l~--~----l~~~~~~l~~L~~L~  407 (413)
                      ++|+.|+|..|.-.  .    -...+.-+|+|+.||
T Consensus        88 psLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   88 PSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             chhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            89999999987543  2    225677889998886

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.80  E-value=0.0055  Score=37.25  Aligned_cols=26  Identities=35%  Similarity=0.770  Sum_probs=16.4

Q ss_pred             cCCCCCCCCCCCCCCCCCcccceEEee
Q 048333           13 DCRPTMASWKPEEGSVDCYSWDVVHCN   39 (413)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~   39 (413)
                      |+...+++|+.. ...++|.|.||.|.
T Consensus        18 ~~~~~l~~W~~~-~~~~~C~W~GV~Cd   43 (43)
T PF08263_consen   18 DPSGVLSSWNPS-SDSDPCSWSGVTCD   43 (43)
T ss_dssp             SC-CCCTT--TT---S-CCCSTTEEE-
T ss_pred             ccCcccccCCCc-CCCCCeeeccEEeC
Confidence            566889999972 02899999999994

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.34  E-value=0.0043  Score=31.49  Aligned_cols=19  Identities=32%  Similarity=0.560  Sum_probs=10.8

Q ss_pred             ceeeeccCCCCCCcchHhh
Q 048333          380 IQYRGLRSCNLTKFPNFLE  398 (413)
Q Consensus       380 L~~L~l~~~~l~~l~~~~~  398 (413)
                      |++|++++|.++.+|..++
T Consensus         2 L~~Ldls~n~l~~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEESEEGTTTT
T ss_pred             ccEEECCCCcCEeCChhhc
Confidence            5566666666665555443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=95.31  E-value=0.00011  Score=70.12  Aligned_cols=185  Identities=26%  Similarity=0.266  Sum_probs=97.9

Q ss_pred             ccEEeCCCCcCCCc----chhhhhCCCCCCEEEccCCcCcccC----CcccCCC-CCCcEEEecCCccccc----cchhh
Q 048333          205 LKELDLSQNGFFGE----LPTSIRNLFSLEKLDLSFNKLSGEF----PWSTGNF-SSLKLLNLRSCGFWSK----VPHSI  271 (413)
Q Consensus       205 L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~----~~~l~~~-~~L~~L~l~~~~~~~~----~~~~~  271 (413)
                      +..+.+.+|.+...    +..++...+.|+.|++++|.+....    -..+... ..++.|.+..|.++..    +...+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            77788888887644    3345566788888888888776321    1122222 4566677766766432    33445


Q ss_pred             ccCCCCCeEecCCcccCCc----cccccc----CCCCCcEEEccCCccccc----ccccccCCCC-CCEEECCCCcCcce
Q 048333          272 GNFTRLQFLFLGFNNFSGD----LLGSIG----NLRSLEVIYIAKCNFSGQ----ITSSLRNLTQ-LVVLDMAQNSYGGT  338 (413)
Q Consensus       272 ~~~~~L~~L~l~~~~~~~~----~~~~l~----~~~~L~~L~L~~~~~~~~----~~~~~~~~~~-L~~L~l~~n~~~~~  338 (413)
                      .....++.++++.|.+...    ....+.    ...++++|++.+|.++..    ....+...++ +..+++..|.+.+.
T Consensus       169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~  248 (478)
T KOG4308|consen  169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV  248 (478)
T ss_pred             hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence            5566777777777765421    111222    345667777777766532    1223333444 55566666665532


Q ss_pred             ec--hhHhhhcc-cCCCeeeccCccccccceeeecccccc-ccccceeeeccCCCCC
Q 048333          339 VE--LDVLLTSW-KNLEALDISLNRSSVLTKATFDATTDT-TSQKIQYRGLRSCNLT  391 (413)
Q Consensus       339 ~~--~~~~~~~~-~~L~~L~l~~~~i~~l~~~~~~~~~~~-~~~~L~~L~l~~~~l~  391 (413)
                      ..  ....+..+ +.+++++++.|.|+..+.  ......+ .++.++++.+..|.++
T Consensus       249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~--~~L~~~l~~~~~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGV--RDLAEVLVSCRQLEELSLSNNPLT  303 (478)
T ss_pred             HHHHHHHHhcccchhhhhhhhhcCCccccch--HHHHHHHhhhHHHHHhhcccCccc
Confidence            11  11122233 345666666666433211  1111111 4456666666666655

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=94.94  E-value=0.015  Score=27.30  Aligned_cols=15  Identities=20%  Similarity=0.288  Sum_probs=5.8

Q ss_pred             cceeeeccCCCCCCc
Q 048333          379 KIQYRGLRSCNLTKF  393 (413)
Q Consensus       379 ~L~~L~l~~~~l~~l  393 (413)
                      +|+.|++++|+++.+
T Consensus         2 ~L~~L~l~~n~L~~l   16 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSL   16 (17)
T ss_dssp             T-SEEEETSS--SSE
T ss_pred             ccCEEECCCCCCCCC
Confidence            345555555554444

...

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.44  E-value=0.018  Score=29.15  Aligned_cols=20  Identities=30%  Similarity=0.571  Sum_probs=11.8

Q ss_pred             CCcEEEcCCccCCCCcCcccc
Q 048333          112 NLKTLNLGDVSIDSTIPHNIK  132 (413)
Q Consensus       112 ~L~~L~l~~~~~~~~~~~~~~  132 (413)
                      +|++|++++|.++ .+|..|.
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~   20 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFS   20 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTT
T ss_pred             CccEEECCCCcCE-eCChhhc
Confidence            3566777776666 4555443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=93.78  E-value=0.00052  Score=65.67  Aligned_cols=189  Identities=25%  Similarity=0.284  Sum_probs=114.9

Q ss_pred             CcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCccccccccccccccccccccCC-CCccEEeCCCCcC
Q 048333          137 LTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNL-GSLKELDLSQNGF  215 (413)
Q Consensus       137 L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~  215 (413)
                      +..|.+.+|.+.+-..       ..+...+...+.|+.|++++|.+.+.....     +...+... +.++.|.+..|.+
T Consensus        89 l~~L~L~~~~l~~~~~-------~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~-----l~~~l~~~~~~l~~L~l~~c~l  156 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGA-------EELAQALKTLPTLGQLDLSGNNLGDEGARL-----LCEGLRLPQCLLQTLELVSCSL  156 (478)
T ss_pred             HHHhhhhhCccccchH-------HHHHHHhcccccHhHhhcccCCCccHhHHH-----HHhhcccchHHHHHHHhhcccc
Confidence            7888888888775211       234455677888999999999888543311     12222222 4566677777776


Q ss_pred             CC----cchhhhhCCCCCCEEEccCCcCcc----cCCcccC----CCCCCcEEEecCCccccc----cchhhccCCC-CC
Q 048333          216 FG----ELPTSIRNLFSLEKLDLSFNKLSG----EFPWSTG----NFSSLKLLNLRSCGFWSK----VPHSIGNFTR-LQ  278 (413)
Q Consensus       216 ~~----~~~~~l~~~~~L~~L~l~~~~~~~----~~~~~l~----~~~~L~~L~l~~~~~~~~----~~~~~~~~~~-L~  278 (413)
                      ..    .+...+.....++.++++.|.+..    ..+..+.    ...++++|.+.+|.++..    ....+...++ +.
T Consensus       157 ~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~  236 (478)
T KOG4308|consen  157 TSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLR  236 (478)
T ss_pred             cccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhH
Confidence            53    245666677788888888776631    1222222    356677888877766321    2223344444 55


Q ss_pred             eEecCCcccCCcccc----cccCC-CCCcEEEccCCccccc----ccccccCCCCCCEEECCCCcCcc
Q 048333          279 FLFLGFNNFSGDLLG----SIGNL-RSLEVIYIAKCNFSGQ----ITSSLRNLTQLVVLDMAQNSYGG  337 (413)
Q Consensus       279 ~L~l~~~~~~~~~~~----~l~~~-~~L~~L~L~~~~~~~~----~~~~~~~~~~L~~L~l~~n~~~~  337 (413)
                      .+++..|.+.+....    .+..+ +.++.+++..|.+++.    .+..+..++.++++.++.|.+.+
T Consensus       237 el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  237 ELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             HHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence            677777776643222    22233 5667888888877643    34455667788888888887763

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.85  E-value=0.019  Score=47.35  Aligned_cols=81  Identities=20%  Similarity=0.183  Sum_probs=46.2

Q ss_pred             CCeEecCCcccCCcccccccCCCCCcEEEccCCcccccc-cccc-cCCCCCCEEECCCCcCcceechhHhhhcccCCCee
Q 048333          277 LQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQI-TSSL-RNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEAL  354 (413)
Q Consensus       277 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~-~~~~-~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L  354 (413)
                      ++.++-+++.+..+....+..++.++.|.+.+|...+.. -+.+ .-.++|+.|++++|.-.++..+. .+..+++|+.|
T Consensus       103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~-~L~~lknLr~L  181 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLA-CLLKLKNLRRL  181 (221)
T ss_pred             EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHH-HHHHhhhhHHH
Confidence            456666666666566666666677777777666554321 1111 13466666777666544444433 55566666666


Q ss_pred             eccC
Q 048333          355 DISL  358 (413)
Q Consensus       355 ~l~~  358 (413)
                      .+.+
T Consensus       182 ~l~~  185 (221)
T KOG3864|consen  182 HLYD  185 (221)
T ss_pred             HhcC
Confidence            6654

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.76  E-value=0.026  Score=46.51  Aligned_cols=79  Identities=14%  Similarity=0.170  Sum_probs=33.6

Q ss_pred             CcEEEecCCccccccchhhccCCCCCeEecCCcccCC-ccccccc-CCCCCcEEEccCCc-ccccccccccCCCCCCEEE
Q 048333          253 LKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSG-DLLGSIG-NLRSLEVIYIAKCN-FSGQITSSLRNLTQLVVLD  329 (413)
Q Consensus       253 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~-~~~~L~~L~L~~~~-~~~~~~~~~~~~~~L~~L~  329 (413)
                      ++.++-+++.+..+....+..+++++.|.+..|.-.+ .....++ ..++|+.|++++|. ||+..-..+..+++|+.|.
T Consensus       103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~  182 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH  182 (221)
T ss_pred             EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence            3444444444444444444555555555555443211 1111111 13455555555542 3322233344445555554


Q ss_pred             CC
Q 048333          330 MA  331 (413)
Q Consensus       330 l~  331 (413)
                      +.
T Consensus       183 l~  184 (221)
T KOG3864|consen  183 LY  184 (221)
T ss_pred             hc
Confidence            43

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=89.40  E-value=0.23  Score=26.11  Aligned_cols=15  Identities=20%  Similarity=0.408  Sum_probs=6.7

Q ss_pred             ceeeeccCCCCCCcc
Q 048333          380 IQYRGLRSCNLTKFP  394 (413)
Q Consensus       380 L~~L~l~~~~l~~l~  394 (413)
                      |+.|++++|++..+|
T Consensus         4 L~~L~L~~N~l~~lp   18 (26)
T smart00369        4 LRELDLSNNQLSSLP   18 (26)
T ss_pred             CCEEECCCCcCCcCC
Confidence            444444444444444

>smart00370 LRR Leucine-rich repeats, outliers

Probab=89.40  E-value=0.23  Score=26.11  Aligned_cols=15  Identities=20%  Similarity=0.408  Sum_probs=6.7

Q ss_pred             ceeeeccCCCCCCcc
Q 048333          380 IQYRGLRSCNLTKFP  394 (413)
Q Consensus       380 L~~L~l~~~~l~~l~  394 (413)
                      |+.|++++|++..+|
T Consensus         4 L~~L~L~~N~l~~lp   18 (26)
T smart00370        4 LRELDLSNNQLSSLP   18 (26)
T ss_pred             CCEEECCCCcCCcCC
Confidence            444444444444444

>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]

Probab=88.68  E-value=1.7  Score=40.87  Aligned_cols=207  Identities=18%  Similarity=0.113  Sum_probs=98.8

Q ss_pred             CccEEeCCCCcCCCcchhhhhCC---CCCCEEEccCCcCcc---cCCcccCCCCCCcEEEecCCccc----ccc----ch
Q 048333          204 SLKELDLSQNGFFGELPTSIRNL---FSLEKLDLSFNKLSG---EFPWSTGNFSSLKLLNLRSCGFW----SKV----PH  269 (413)
Q Consensus       204 ~L~~L~l~~~~~~~~~~~~l~~~---~~L~~L~l~~~~~~~---~~~~~l~~~~~L~~L~l~~~~~~----~~~----~~  269 (413)
                      .+++++++.+...+.+|..+..+   ..++.++.+...+.-   .-+...+.-.+++..+++.++..    .+.    ..
T Consensus       215 ~lteldls~n~~Kddip~~~n~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s~skg~Egg~~~k~  294 (553)
T KOG4242|consen  215 WLTELDLSTNGGKDDIPRTLNKKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTSPSKGEEGGGAEKD  294 (553)
T ss_pred             cccccccccCCCCccchhHHHHhhhhhhhhcccccccccchhhcccccccccccccchhhhccCCCCccccccccccccc
Confidence            57788898888877777654433   246666666554421   11222334456666666655431    111    12


Q ss_pred             hhccCCCCCeEecCCcccCCccccc----ccC--CCCCcEEEccCCcccc-cccccccCCCCCCEEECCCCcCcceechh
Q 048333          270 SIGNFTRLQFLFLGFNNFSGDLLGS----IGN--LRSLEVIYIAKCNFSG-QITSSLRNLTQLVVLDMAQNSYGGTVELD  342 (413)
Q Consensus       270 ~~~~~~~L~~L~l~~~~~~~~~~~~----l~~--~~~L~~L~L~~~~~~~-~~~~~~~~~~~L~~L~l~~n~~~~~~~~~  342 (413)
                      .+..-.++ +|++..+....+.+..    ++.  -..=-++++..|...+ .....-..-..++.|.+..|...+...-.
T Consensus       295 ~fS~~~sg-hln~~~~~~psE~lks~LLgla~ne~t~g~rldl~~cp~~~a~vleaci~g~R~q~l~~rdnnldgeg~~v  373 (553)
T KOG4242|consen  295 TFSPDPSG-HLNSRPRYTPSEKLKSMLLGLAENEATLGARLDLRRCPLERAEVLEACIFGQRVQVLLQRDNNLDGEGGAV  373 (553)
T ss_pred             ccCcCccc-ccccccccCchhhhhhhhcccccccccccccCChhhccccccchhhccccceeeeEeeccccccccccccc
Confidence            23333445 6666655433221111    111  1111234444444431 12222223345777888777776544322


Q ss_pred             HhhhcccCCCeeeccCcccc---ccceeeecccccc-ccccceeeeccCCCCCC----cchHhhcCCCCcEEeCCCC
Q 048333          343 VLLTSWKNLEALDISLNRSS---VLTKATFDATTDT-TSQKIQYRGLRSCNLTK----FPNFLENQNHLVILNLSDN  411 (413)
Q Consensus       343 ~~~~~~~~L~~L~l~~~~i~---~l~~~~~~~~~~~-~~~~L~~L~l~~~~l~~----l~~~~~~l~~L~~L~l~~n  411 (413)
                      .....-+..+.+.+.....+   ..+.......... ...-+.++.++.|.+..    .......-+.+..|+++||
T Consensus       374 gk~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn  450 (553)
T KOG4242|consen  374 GKRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGN  450 (553)
T ss_pred             cceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCcccccHHHHHHhhccCcccccccccCC
Confidence            23444556676766654321   0000000000001 34456677777776652    2233345567777777776

>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]

Probab=87.58  E-value=0.36  Score=46.14  Aligned_cols=39  Identities=26%  Similarity=0.308  Sum_probs=22.0

Q ss_pred             CCCCCCEEECCCCcCcceechhHhhhcccCCCeeeccCc
Q 048333          321 NLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLN  359 (413)
Q Consensus       321 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~  359 (413)
                      +.+.+..+++++|++.....+.......|.|..|+|++|
T Consensus       216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N  254 (585)
T KOG3763|consen  216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN  254 (585)
T ss_pred             CCcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence            345556666666665544443334445566666666666

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=84.92  E-value=0.51  Score=24.21  Aligned_cols=14  Identities=43%  Similarity=0.629  Sum_probs=7.5

Q ss_pred             CCCCcEEeCCCCCC
Q 048333          400 QNHLVILNLSDNRI  413 (413)
Q Consensus       400 l~~L~~L~l~~n~i  413 (413)
                      +++|+.|++++|+|
T Consensus         1 ~~~L~~L~l~~n~i   14 (24)
T PF13516_consen    1 NPNLETLDLSNNQI   14 (24)
T ss_dssp             -TT-SEEE-TSSBE
T ss_pred             CCCCCEEEccCCcC
Confidence            45677777777754

...

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=81.74  E-value=0.9  Score=23.92  Aligned_cols=18  Identities=17%  Similarity=0.338  Sum_probs=13.6

Q ss_pred             ccceeeeccCCCCCCcch
Q 048333          378 QKIQYRGLRSCNLTKFPN  395 (413)
Q Consensus       378 ~~L~~L~l~~~~l~~l~~  395 (413)
                      ++|+.|++++|+++.+|+
T Consensus         2 ~~L~~L~vs~N~Lt~LPe   19 (26)
T smart00364        2 PSLKELNVSNNQLTSLPE   19 (26)
T ss_pred             cccceeecCCCccccCcc
Confidence            457788888888887775

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=80.43  E-value=0.075  Score=44.94  Aligned_cols=86  Identities=16%  Similarity=0.178  Sum_probs=59.7

Q ss_pred             ccCCCCCCEEECCCCcCcceechhHhhhcccCCCeeeccCccccccceeeeccccccccccceeeeccCCCCCCcchHhh
Q 048333          319 LRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLTKFPNFLE  398 (413)
Q Consensus       319 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~  398 (413)
                      +......+.||++.|.+.....   .++-+..+..|+++.|.+..++....      ....+..+++..|.....|..++
T Consensus        38 i~~~kr~tvld~~s~r~vn~~~---n~s~~t~~~rl~~sknq~~~~~~d~~------q~~e~~~~~~~~n~~~~~p~s~~  108 (326)
T KOG0473|consen   38 IASFKRVTVLDLSSNRLVNLGK---NFSILTRLVRLDLSKNQIKFLPKDAK------QQRETVNAASHKNNHSQQPKSQK  108 (326)
T ss_pred             hhccceeeeehhhhhHHHhhcc---chHHHHHHHHHhccHhhHhhChhhHH------HHHHHHHHHhhccchhhCCcccc
Confidence            3456667777887776653222   45556677888888887655443332      34457778888888888888888


Q ss_pred             cCCCCcEEeCCCCCC
Q 048333          399 NQNHLVILNLSDNRI  413 (413)
Q Consensus       399 ~l~~L~~L~l~~n~i  413 (413)
                      ..|.++.++..++++
T Consensus       109 k~~~~k~~e~k~~~~  123 (326)
T KOG0473|consen  109 KEPHPKKNEQKKTEF  123 (326)
T ss_pred             ccCCcchhhhccCcc
Confidence            888888888887764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	413
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		3e-13
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		3e-13
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		2e-07
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		3e-07
3ul9_A	278	Structure Of The Tv3 Mutant M41e Length = 278		2e-04
2z62_A	276	Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 A		2e-04
3ul8_A	279	Crystal Structure Of The Tv3 Mutant V134l Length =		3e-04
4g8a_A	635	Crystal Structure Of Human Tlr4 Polymorphic Variant		4e-04
2z63_A	570	Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 A		4e-04
3fxi_A	605	Crystal Structure Of The Human Tlr4-Human Md-2-E.Co		4e-04
3ul7_A	278	Crystal Structure Of The Tv3 Mutant F63w Length = 2		9e-04

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 69.3 bits (168), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 54/201 (26%), Positives = 94/201 (46%), Gaps = 1/201 (0%)
Query: 193 GELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSS 252
           G++P ++ N   L  L LS N   G +P+S+ +L  L  L L  N L GE P       +
Sbjct: 405 GKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKT 464
Query: 253 LKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFS 312
           L+ L L       ++P  + N T L ++ L  N  +G++   IG L +L ++ ++  +FS
Sbjct: 465 LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFS 524
Query: 313 GQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLXXXXXXXX 372
           G I + L +   L+ LD+  N + GT+   +   S K + A  I+  R   +        
Sbjct: 525 GNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK-IAANFIAGKRYVYIKNDGMKKE 583
Query: 373 XXXXSQKIQYRGLRSCNLTKF 393
                  ++++G+RS  L + 
Sbjct: 584 CHGAGNLLEFQGIRSEQLNRL 604

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 68.9 bits (167), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 54/201 (26%), Positives = 94/201 (46%), Gaps = 1/201 (0%)
Query: 193 GELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSS 252
           G++P ++ N   L  L LS N   G +P+S+ +L  L  L L  N L GE P       +
Sbjct: 408 GKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKT 467
Query: 253 LKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFS 312
           L+ L L       ++P  + N T L ++ L  N  +G++   IG L +L ++ ++  +FS
Sbjct: 468 LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFS 527
Query: 313 GQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLXXXXXXXX 372
           G I + L +   L+ LD+  N + GT+   +   S K + A  I+  R   +        
Sbjct: 528 GNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK-IAANFIAGKRYVYIKNDGMKKE 586
Query: 373 XXXXSQKIQYRGLRSCNLTKF 393
                  ++++G+RS  L + 
Sbjct: 587 CHGAGNLLEFQGIRSEQLNRL 607

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/171 (30%), Positives = 83/171 (48%), Gaps = 11/171 (6%)
Query: 193 GELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSS 252
           G +P  +  + +L  LD S N   G LP SI +L +L  +    N++SG  P S G+FS 
Sbjct: 115 GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSK 174
Query: 253 L-KLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNF 311
           L   + +       K+P +  N   L F+ L  N   GD     G+ ++ + I++AK + 
Sbjct: 175 LFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL 233
Query: 312 S---GQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLN 359
           +   G++  S +NL     LD+  N   GT+     LT  K L +L++S N
Sbjct: 234 AFDLGKVGLS-KNLNG---LDLRNNRIYGTLPQG--LTQLKFLHSLNVSFN 278

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 3/98 (3%)
Query: 266 KVPHSIGNFTRLQFLFLG-FNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQ 324
            +P S+ N   L FL++G  NN  G +  +I  L  L  +YI   N SG I   L  +  
Sbjct: 67  PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT 126
Query: 325 LVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSS 362
           LV LD + N+  GT+   +  +S  NL  +    NR S
Sbjct: 127 LVTLDFSYNALSGTLPPSI--SSLPNLVGITFDGNRIS 162

>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e Length = 278

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 63/134 (47%), Gaps = 1/134 (0%)
Query: 227 FSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNN 286
           FS + LDLSFN L     +S  +F  L++L+L  C   +    +  + + L  L L  N 
Sbjct: 29  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 88
Query: 287 FSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLT 346
                LG+   L SL+ +   + N +      + +L  L  L++A N    + +L    +
Sbjct: 89  IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI-QSFKLPEYFS 147
Query: 347 SWKNLEALDISLNR 360
           +  NLE LD+S N+
Sbjct: 148 NLTNLEHLDLSSNK 161

>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 276

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 69/145 (47%), Gaps = 3/145 (2%)
Query: 216 FGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFT 275
           F ++P ++   FS + LDLSFN L     +S  +F  L++L+L  C   +    +  + +
Sbjct: 19  FYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLS 76
Query: 276 RLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSY 335
            L  L L  N      LG+   L SL+ +   + N +      + +L  L  L++A N  
Sbjct: 77  HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 136
Query: 336 GGTVELDVLLTSWKNLEALDISLNR 360
             + +L    ++  NLE LD+S N+
Sbjct: 137 -QSFKLPEYFSNLTNLEHLDLSSNK 160

>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l Length = 279

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 63/134 (47%), Gaps = 1/134 (0%)
Query: 227 FSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNN 286
           FS + LDLSFN L     +S  +F  L++L+L  C   +    +  + + L  L L  N 
Sbjct: 30  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 89
Query: 287 FSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLT 346
                LG+   L SL+ +   + N +      + +L  L  L++A N    + +L    +
Sbjct: 90  IQSLALGAFSGLSSLQKLVALETNLASLENFPIGHLKTLKELNVAHNLI-QSFKLPEYFS 148
Query: 347 SWKNLEALDISLNR 360
           +  NLE LD+S N+
Sbjct: 149 NLTNLEHLDLSSNK 162

>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g And T399i In Complex With Md-2 And Lps Length = 635

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 69/145 (47%), Gaps = 3/145 (2%)
Query: 216 FGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFT 275
           F ++P ++   FS + LDLSFN L     +S  +F  L++L+L  C   +    +  + +
Sbjct: 43  FYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLS 100
Query: 276 RLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSY 335
            L  L L  N      LG+   L SL+ +   + N +      + +L  L  L++A N  
Sbjct: 101 HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 160
Query: 336 GGTVELDVLLTSWKNLEALDISLNR 360
             + +L    ++  NLE LD+S N+
Sbjct: 161 -QSFKLPEYFSNLTNLEHLDLSSNK 184

>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 570

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 69/145 (47%), Gaps = 3/145 (2%)
Query: 216 FGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFT 275
           F ++P ++   FS + LDLSFN L     +S  +F  L++L+L  C   +    +  + +
Sbjct: 19  FYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLS 76
Query: 276 RLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSY 335
            L  L L  N      LG+   L SL+ +   + N +      + +L  L  L++A N  
Sbjct: 77  HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 136
Query: 336 GGTVELDVLLTSWKNLEALDISLNR 360
             + +L    ++  NLE LD+S N+
Sbjct: 137 -QSFKLPEYFSNLTNLEHLDLSSNK 160

>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps Ra Complex Length = 605

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 69/145 (47%), Gaps = 3/145 (2%)
Query: 216 FGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFT 275
           F ++P ++   FS + LDLSFN L     +S  +F  L++L+L  C   +    +  + +
Sbjct: 19  FYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLS 76
Query: 276 RLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSY 335
            L  L L  N      LG+   L SL+ +   + N +      + +L  L  L++A N  
Sbjct: 77  HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 136
Query: 336 GGTVELDVLLTSWKNLEALDISLNR 360
             + +L    ++  NLE LD+S N+
Sbjct: 137 -QSFKLPEYFSNLTNLEHLDLSSNK 160

>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w Length = 278

Iteration: 1
 Score = 41.6 bits (96), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 69/145 (47%), Gaps = 3/145 (2%)
Query: 216 FGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFT 275
           F ++P ++   FS + LDLS+N L     +S  +F  L++L+L  C   +    +  + +
Sbjct: 20  FYKIPDNLP--FSTKNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLS 77
Query: 276 RLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSY 335
            L  L L  N      LG+   L SL+ +   + N +      + +L  L  L++A N  
Sbjct: 78  HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 137
Query: 336 GGTVELDVLLTSWKNLEALDISLNR 360
             + +L    ++  NLE LD+S N+
Sbjct: 138 -QSFKLPEYFSNLTNLEHLDLSSNK 161

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	413
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-59
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-50
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-48
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-44
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-42
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-29
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-26
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-48
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-42
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-22
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-45
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-32
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-13
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-43
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-36
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-28
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-20
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-13
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-38
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-36
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-32
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-31
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-30
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-22
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-22
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-11
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-37
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-32
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-29
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-21
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	9e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-34
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-29
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-29
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-28
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-24
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-21
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-32
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-30
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-30
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-28
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-27
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-26
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-23
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-23
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-28
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-27
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-26
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-26
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-22
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-19
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-28
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-25
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-27
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-23
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-20
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-18
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-16
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-27
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-26
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-24
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-18
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-24
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-23
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-22
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-21
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-14
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-23
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-20
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-18
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-17
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-15
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-22
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-20
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-18
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-14
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-21
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-19
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-18
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-21
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-20
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-21
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-18
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-09
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-09
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-20
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-15
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-20
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-14
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-11
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-20
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-18
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-17
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-16
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-10
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-19
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-11
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-07
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	9e-18
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-16
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-14
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-12
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-17
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-13
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-11
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-17
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-16
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-16
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-15
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-16
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-12
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-11
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-16
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-15
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-14
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-14
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-13
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-12
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-15
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-13
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-12
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-12
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-07
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-14
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-12
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	7e-10
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-14
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-13
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-12
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-12
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-14
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-13
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-12
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-13
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-12
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-11
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-10
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-09
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-12
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-11
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-10
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-12
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-12
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-11
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-11
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-08
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-12
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-12
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	7e-08
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-07
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-11
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-10
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-09
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	8e-11
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-10
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-10
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	5e-10
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-09
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	6e-09
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	5e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	9e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	9e-10
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-09
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-06
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-09
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-06
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	7e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-08
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	6e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	6e-08
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	5e-07
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	6e-07
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	4e-06
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	6e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	9e-07
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	3e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	5e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	5e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	8e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	9e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	1e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	4e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	2e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  204 bits (521), Expect = 5e-59
 Identities = 96/414 (23%), Positives = 163/414 (39%), Gaps = 57/414 (13%)

Query: 19  ASWKPEEGSVDCYSWDVVHCNKNTGHVIKLNLSHGCLFGSINS-SSSLFKLVHLKWLNLA 77
             W     + +  ++D V C      V  ++LS   L    ++ SSSL  L  L+ L L+
Sbjct: 31  PDWSS---NKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLS 85

Query: 78  LNDFNSSEIPPEIINLSRLEL----------QKPSFENLFEKLSNLKTLNLGDVSIDSTI 127
            +  N S         + L               +  +L    S LK LN+   ++D   
Sbjct: 86  NSHINGS--VSGFKCSASLTSLDLSRNSLSGPVTTLTSLG-SCSGLKFLNVSSNTLDFPG 142

Query: 128 P-HNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSL---GNLSKLLHLDLSLNELQ 183
                  L+SL  + L    +           SG             +L HL +S N++ 
Sbjct: 143 KVSGGLKLNSLEVLDLSANSI-----------SGANVVGWVLSDGCGELKHLAISGNKIS 191

Query: 184 GEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEF 243
           G            + +    +L+ LD+S N F   +P  + +  +L+ LD+S NKLSG+F
Sbjct: 192 G-----------DVDVSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDF 239

Query: 244 PWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSI-GNLRSLE 302
             +    + LKLLN+ S  F   +P        LQ+L L  N F+G++   + G   +L 
Sbjct: 240 SRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLT 297

Query: 303 VIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSS 362
            + ++  +F G +     + + L  L ++ N++ G + +D  L   + L+ LD+S N  S
Sbjct: 298 GLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDT-LLKMRGLKVLDLSFNEFS 356

Query: 363 VLTKATFDATTDTTSQKIQYRGLRSCNLT-KFPNFLEN--QNHLVILNLSDNRI 413
                    +    S  +    L S N +      L    +N L  L L +N  
Sbjct: 357 ----GELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGF 406

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  180 bits (459), Expect = 2e-50
 Identities = 87/379 (22%), Positives = 145/379 (38%), Gaps = 45/379 (11%)

Query: 48  LNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPPEIINLSRLE--------LQ 99
           L+L+     G I           L  L+L+ N F    +PP   + S LE          
Sbjct: 274 LSLAENKFTGEI-PDFLSGACDTLTGLDLSGNHF-YGAVPPFFGSCSLLESLALSSNNFS 331

Query: 100 KPSFENLFEKLSNLKTLNLGDVSIDSTIPHNIKNLS-SLTFVSLRNCELQAMCSFFLIQI 158
                +   K+  LK L+L        +P ++ NLS SL  + L +              
Sbjct: 332 GELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSN-----------NF 380

Query: 159 SGRIPSSLGN--LSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFF 216
           SG I  +L     + L  L L  N   G+         +P ++ N   L  L LS N   
Sbjct: 381 SGPILPNLCQNPKNTLQELYLQNNGFTGK---------IPPTLSNCSELVSLHLSFNYLS 431

Query: 217 GELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTR 276
           G +P+S+ +L  L  L L  N L GE P       +L+ L L       ++P  + N T 
Sbjct: 432 GTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTN 491

Query: 277 LQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYG 336
           L ++ L  N  +G++   IG L +L ++ ++  +FSG I + L +   L+ LD+  N + 
Sbjct: 492 LNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN 551

Query: 337 GTV--ELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLTKFP 394
           GT+   +         + A  I+  R   +               ++++G+RS  L +  
Sbjct: 552 GTIPAAMFKQ---SGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLS 608

Query: 395 NFLENQNHLVILNLSDNRI 413
                       N++    
Sbjct: 609 T-------RNPCNITSRVY 620

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  173 bits (442), Expect = 4e-48
 Identities = 87/327 (26%), Positives = 134/327 (40%), Gaps = 40/327 (12%)

Query: 48  LNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPPEIINLS----RLELQK--- 100
           L LS     G +    +L K+  LK L+L+ N+F S E+P  + NLS     L+L     
Sbjct: 323 LALSSNNFSGEL-PMDTLLKMRGLKVLDLSFNEF-SGELPESLTNLSASLLTLDLSSNNF 380

Query: 101 -----PSFENLFEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFL 155
                P+        + L+ L L +      IP  + N S L  + L             
Sbjct: 381 SGPILPNLCQN--PKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFN---------- 428

Query: 156 IQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGF 215
             +SG IPSSLG+LSKL  L L LN L+GE         +P  +  + +L+ L L  N  
Sbjct: 429 -YLSGTIPSSLGSLSKLRDLKLWLNMLEGE---------IPQELMYVKTLETLILDFNDL 478

Query: 216 FGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFT 275
            GE+P+ + N  +L  + LS N+L+GE P   G   +L +L L +  F   +P  +G+  
Sbjct: 479 TGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCR 538

Query: 276 RLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSY 335
            L +L L  N F+G +  ++          IA    +G+    ++N         A N  
Sbjct: 539 SLIWLDLNTNLFNGTIPAAMFKQSGK----IAANFIAGKRYVYIKNDGMKKECHGAGNLL 594

Query: 336 GGTVELDVLLTSWKNLEALDISLNRSS 362
                    L         +I+     
Sbjct: 595 EFQGIRSEQLNRLSTRNPCNITSRVYG 621

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  161 bits (410), Expect = 8e-44
 Identities = 81/328 (24%), Positives = 124/328 (37%), Gaps = 36/328 (10%)

Query: 42  TGHVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPPEIINLSRLELQKP 101
           +  ++ L+LS     G I  +        L+ L L  N F + +IPP + N S L     
Sbjct: 367 SASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGF-TGKIPPTLSNCSELVSLHL 425

Query: 102 SFENL-------FEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFF 154
           SF  L          LS L+ L L    ++  IP  +  + +L  + L            
Sbjct: 426 SFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFN--------- 476

Query: 155 LIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNG 214
              ++G IPS L N + L  + LS N L GE         +P  +G L +L  L LS N 
Sbjct: 477 --DLTGEIPSGLSNCTNLNWISLSNNRLTGE---------IPKWIGRLENLAILKLSNNS 525

Query: 215 FFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNF 274
           F G +P  + +  SL  LDL+ N  +G  P +    S     N  +     K    I N 
Sbjct: 526 FSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIA----GKRYVYIKND 581

Query: 275 TRLQFLFLGFN--NFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQ 332
              +      N   F G     +  L +     I    + G  + +  N   ++ LDM+ 
Sbjct: 582 GMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSY 641

Query: 333 NSYGGTVELDVLLTSWKNLEALDISLNR 360
           N   G   +   + S   L  L++  N 
Sbjct: 642 NMLSG--YIPKEIGSMPYLFILNLGHND 667

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  156 bits (396), Expect = 7e-42
 Identities = 79/352 (22%), Positives = 137/352 (38%), Gaps = 54/352 (15%)

Query: 38  CNKNTGHVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPPEIINLSRLE 97
           C      + +L L +    G I    +L     L  L+L+ N   S  IP  + +LS+L 
Sbjct: 389 CQNPKNTLQELYLQNNGFTGKI--PPTLSNCSELVSLHLSFNYL-SGTIPSSLGSLSKLR 445

Query: 98  ---LQKPSFE----NLFEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAM 150
              L     E         +  L+TL L    +   IP  + N ++L ++SL N      
Sbjct: 446 DLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNN----- 500

Query: 151 CSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDL 210
                 +++G IP  +G L  L  L LS N            G +P  +G+  SL  LDL
Sbjct: 501 ------RLTGEIPKWIGRLENLAILKLSNNSF---------SGNIPAELGDCRSLIWLDL 545

Query: 211 SQNGFFGELPTSI--------------------RNLFSLEKLDLSFN--KLSGEFPWSTG 248
           + N F G +P ++                    +N    ++   + N  +  G       
Sbjct: 546 NTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLN 605

Query: 249 NFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAK 308
             S+    N+ S  +      +  N   + FL + +N  SG +   IG++  L ++ +  
Sbjct: 606 RLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGH 665

Query: 309 CNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNR 360
            + SG I   + +L  L +LD++ N   G   +   +++   L  +D+S N 
Sbjct: 666 NDISGSIPDEVGDLRGLNILDLSSNKLDG--RIPQAMSALTMLTEIDLSNNN 715

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  118 bits (297), Expect = 7e-29
 Identities = 67/260 (25%), Positives = 105/260 (40%), Gaps = 30/260 (11%)

Query: 48  LNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPPEI---INLSRLELQKPSFE 104
           L L    L G I   S L    +L W++L+ N   + EIP  I    NL+ L+L   SF 
Sbjct: 471 LILDFNDLTGEI--PSGLSNCTNLNWISLSNNRL-TGEIPKWIGRLENLAILKLSNNSFS 527

Query: 105 ----NLFEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLT---------FVSLRNCELQAMC 151
                      +L  L+L     + TIP  +   S            +V ++N  ++  C
Sbjct: 528 GNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKEC 587

Query: 152 --SFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELD 209
             +  L++  G     L  LS     +++     G             +  N GS+  LD
Sbjct: 588 HGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGH---------TSPTFDNNGSMMFLD 638

Query: 210 LSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPH 269
           +S N   G +P  I ++  L  L+L  N +SG  P   G+   L +L+L S     ++P 
Sbjct: 639 MSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ 698

Query: 270 SIGNFTRLQFLFLGFNNFSG 289
           ++   T L  + L  NN SG
Sbjct: 699 AMSALTMLTEIDLSNNNLSG 718

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  109 bits (274), Expect = 7e-26
 Identities = 52/224 (23%), Positives = 83/224 (37%), Gaps = 31/224 (13%)

Query: 48  LNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENLF 107
           L LS+    G+I   + L     L WL+L  N F +  IP  +   S            +
Sbjct: 519 LKLSNNSFSGNI--PAELGDCRSLIWLDLNTNLF-NGTIPAAMFKQSGKIAANFIAGKRY 575

Query: 108 EKLSNLKTLNLGDVS-----IDSTIPHNIKNLSSLTFVSLRN--------CELQAMCSFF 154
             + N         +             +  LS+    ++ +               S  
Sbjct: 576 VYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMM 635

Query: 155 LI-----QISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELD 209
            +      +SG IP  +G++  L  L+L  N++ G          +P  +G+L  L  LD
Sbjct: 636 FLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGS---------IPDEVGDLRGLNILD 686

Query: 210 LSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSL 253
           LS N   G +P ++  L  L ++DLS N LSG  P   G F + 
Sbjct: 687 LSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP-EMGQFETF 729

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  166 bits (424), Expect = 1e-48
 Identities = 72/317 (22%), Positives = 122/317 (38%), Gaps = 49/317 (15%)

Query: 16  PTMASWKPEEGSVDC--YSWDVVHCNK--NTGHVIKLNLSHGCLFGSINSSSSLFKLVHL 71
            T++SW P   + DC   +W  V C+    T  V  L+LS   L       SSL  L +L
Sbjct: 22  TTLSSWLP---TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYL 78

Query: 72  KWLNLALNDFNSSEIPPEIINLSRLELQKPSFENLFEKLSNLKTLNLGDVSIDSTIPHNI 131
            +L +   +     IPP I                   L+ L  L +   ++   IP  +
Sbjct: 79  NFLYIGGINNLVGPIPPAIAK-----------------LTQLHYLYITHTNVSGAIPDFL 121

Query: 132 KNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRC 191
             + +L  +      L           SG +P S+ +L  L+ +    N +         
Sbjct: 122 SQIKTLVTLDFSYNAL-----------SGTLPPSISSLPNLVGITFDGNRIS-------- 162

Query: 192 FGELPISMGNLGSLKE-LDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNF 250
            G +P S G+   L   + +S+N   G++P +  NL +L  +DLS N L G+     G+ 
Sbjct: 163 -GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSD 220

Query: 251 SSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCN 310
            + + ++L        +   +G    L  L L  N   G L   +  L+ L  + ++  N
Sbjct: 221 KNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN 279

Query: 311 FSGQI--TSSLRNLTQL 325
             G+I    +L+     
Sbjct: 280 LCGEIPQGGNLQRFDVS 296

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  149 bits (380), Expect = 3e-42
 Identities = 58/290 (20%), Positives = 102/290 (35%), Gaps = 56/290 (19%)

Query: 127 IPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLS-LNELQGE 185
           +         +  + L    L              IPSSL NL  L  L +  +N L   
Sbjct: 42  LCDTDTQTYRVNNLDLSGLNLPK---------PYPIPSSLANLPYLNFLYIGGINNL--- 89

Query: 186 AASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPW 245
                  G +P ++  L  L  L ++     G +P  +  + +L  LD S+N LSG  P 
Sbjct: 90  ------VGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPP 143

Query: 246 STGNFSSLKLLNLRSCGFWSKVPHSIGNFTRL-QFLFLGFNNFSGDLLGSIGNLRSLEVI 304
           S  +  +L  +          +P S G+F++L   + +  N  +G +  +  NL +L  +
Sbjct: 144 SISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFV 202

Query: 305 YIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTV-ELDVLLTSWKNLEALDISLNRSSV 363
            +++    G  +    +      + +A+NS    + ++ +     KNL  LD+  N    
Sbjct: 203 DLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLS----KNLNGLDLRNN---- 254

Query: 364 LTKATFDATTDTTSQKIQYRGLRSCNLT-KFPNFLENQNHLVILNLSDNR 412
                                     +    P  L     L  LN+S N 
Sbjct: 255 -------------------------RIYGTLPQGLTQLKFLHSLNVSFNN 279

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 96.4 bits (241), Expect = 1e-22
 Identities = 43/210 (20%), Positives = 74/210 (35%), Gaps = 35/210 (16%)

Query: 208 LDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEF--PWSTGNFSSLKLLNLRS-CGFW 264
            D     + G L  +    + +  LDLS   L   +  P S  N   L  L +       
Sbjct: 31  TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV 90

Query: 265 SKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQ 324
             +P +I   T+L +L++   N SG +   +  +++L  +  +    SG +  S+ +L  
Sbjct: 91  GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPN 150

Query: 325 LVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRG 384
           LV +    N   G      +  S+ +   L  S+                          
Sbjct: 151 LVGITFDGNRISGA-----IPDSYGSFSKLFTSMT------------------------- 180

Query: 385 LRSCNLT-KFPNFLENQNHLVILNLSDNRI 413
           +    LT K P    N N L  ++LS N +
Sbjct: 181 ISRNRLTGKIPPTFANLN-LAFVDLSRNML 209

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  163 bits (415), Expect = 6e-45
 Identities = 63/438 (14%), Positives = 137/438 (31%), Gaps = 51/438 (11%)

Query: 10  WKFDCRPTMASWKPEEGSVDCYSWDVVHCNKNTGHVIKLNLSHGCLFGSINSSSSLFKLV 69
            +       A+W   +      +   V  N + G V  L+L      G +    ++ +L 
Sbjct: 49  QQGFGTQPGANWNFNKELDMWGAQPGVSLN-SNGRVTGLSLEGFGASGRV--PDAIGQLT 105

Query: 70  HLKWLNLALNDF---NSSEIPPEIINLSRLELQKPSFENL---------FEKLSNLKTLN 117
            L+ L L  +          P  I      E ++    +           E  S+L    
Sbjct: 106 ELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDC 165

Query: 118 LGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDL 177
           +       +I  + +     T +   +  +              +  ++  L+KL    +
Sbjct: 166 INSDPQQKSIKKSSRITLKDTQIGQLSNNI------------TFVSKAVMRLTKLRQFYM 213

Query: 178 SLNELQGEA----------ASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLF 227
             +    E              + +    +   NL  L ++++       +LPT ++ L 
Sbjct: 214 GNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALP 273

Query: 228 SLEKLDLSFNKL--------SGEFPWSTGNFSSLKLLNLRSCGFWS-KVPHSIGNFTRLQ 278
            ++ ++++ N+           +          ++++ +      +  V  S+    +L 
Sbjct: 274 EMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLG 333

Query: 279 FLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGT 338
            L   +N   G  L + G+   L  + +A    +    +      Q+  L  A N     
Sbjct: 334 MLECLYNQLEG-KLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYI 392

Query: 339 VELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDTTSQ--KIQYRGLRSCNLTKFP-N 395
                   S   + A+D S N    +    FD    T  +   +    L +  ++KFP  
Sbjct: 393 PN-IFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKE 451

Query: 396 FLENQNHLVILNLSDNRI 413
                + L  +NL  N +
Sbjct: 452 LFSTGSPLSSINLMGNML 469

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  127 bits (321), Expect = 4e-32
 Identities = 50/352 (14%), Positives = 105/352 (29%), Gaps = 60/352 (17%)

Query: 47  KLNLSH------GCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPPEIINLSRLE--- 97
            +N++         L     + +       ++ + +  N+  +  +   +  + +L    
Sbjct: 277 LINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLE 336

Query: 98  LQKPSFENL---FEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFF 154
                 E     F     L +LNL    I     +       +  +S  + +L+      
Sbjct: 337 CLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK------ 390

Query: 155 LIQISGRIPSSL--GNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQ 212
                  IP+     ++S +  +D S NE+       + F  L  +     ++  ++LS 
Sbjct: 391 ------YIPNIFDAKSVSVMSAIDFSYNEIGS--VDGKNFDPLDPTPFKGINVSSINLSN 442

Query: 213 NGFFGELPTSIRNLFSLEKLDLSFNKLSG-------EFPWSTGNFSSLKLLNLRSCGFWS 265
           N               L  ++L  N L+        +   +  N   L  ++LR     +
Sbjct: 443 NQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKL-T 501

Query: 266 KVPHSI--GNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYI------AKCNFSGQITS 317
           K+           L  + L +N+FS        N  +L+   I             +   
Sbjct: 502 KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPE 560

Query: 318 SLRNLTQLVVLDMAQNSYGGTVELDVLLTS-----WKNLEALDISLNRSSVL 364
            +     L  L +  N           +         N+  LDI  N +  +
Sbjct: 561 GITLCPSLTQLQIGSND----------IRKVNEKITPNISVLDIKDNPNISI 602

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 71.6 bits (176), Expect = 1e-13
 Identities = 32/208 (15%), Positives = 57/208 (27%), Gaps = 34/208 (16%)

Query: 47  KLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNS------SEIPPEIINLSRLE--- 97
            +NLS+  +               L  +NL  N           +      N   L    
Sbjct: 437 SINLSNNQISKFP--KELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSID 494

Query: 98  -----LQKPSFENLFEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCS 152
                L K S +     L  L  ++L   S  S  P    N S+L    +RN        
Sbjct: 495 LRFNKLTKLSDDFRATTLPYLVGIDLSYNSF-SKFPTQPLNSSTLKGFGIRNQRDAQGN- 552

Query: 153 FFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQ 212
               +     P  +     L  L +  N+++             ++     ++  LD+  
Sbjct: 553 ----RTLREWPEGITLCPSLTQLQIGSNDIRK------------VNEKITPNISVLDIKD 596

Query: 213 NGFFGELPTSIRNLFSLEKLDLSFNKLS 240
           N       + +          L ++K  
Sbjct: 597 NPNISIDLSYVCPYIEAGMYMLFYDKTQ 624

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  161 bits (409), Expect = 1e-43
 Identities = 59/436 (13%), Positives = 139/436 (31%), Gaps = 41/436 (9%)

Query: 6   DFYAWKFDCRPTMASWKPEEGSVDCYSWDVVHCNKNTGHVIKLNLSHGCLFGSINSSSSL 65
            +Y+   +      +W   +          V  + N G V  L+L+     G +    ++
Sbjct: 287 RYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLD-NNGRVTGLSLAGFGAKGRV--PDAI 343

Query: 66  FKLVHLKWLNLALND-------FNSSEIPPEIINLSRLELQKPSFENLFEKLSNLKTLNL 118
            +L  LK L+   +        F   E+ P++    +  ++    +   +    L   +L
Sbjct: 344 GQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDL 403

Query: 119 GDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLS 178
              +I+      +K +   + +SL++ ++  + +         I  ++  L+KL  +  +
Sbjct: 404 LQDAINRN--PEMKPIKKDSRISLKDTQIGNLTNRI-----TFISKAIQRLTKLQIIYFA 456

Query: 179 LNELQGEAASFRC----------FGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFS 228
            +    +  +             +    +S  NL  L +++L       +LP  + +L  
Sbjct: 457 NSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPE 516

Query: 229 LEKLDLSFNKLSG---------EFPWSTGNFSSLKLLNLRSCGFWS-KVPHSIGNFTRLQ 278
           L+ L+++ N+                       +++  +            S+    +L 
Sbjct: 517 LQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLG 576

Query: 279 FLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGT 338
            L    N      L + G    L  + +                 Q+  L  + N     
Sbjct: 577 LLDCVHNKVRH--LEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKL-KY 633

Query: 339 VELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLTKFP-NFL 397
           +       S   + ++D S N+     +    +  D          L    + KFP    
Sbjct: 634 IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELF 693

Query: 398 ENQNHLVILNLSDNRI 413
              + +  + LS+N +
Sbjct: 694 ATGSPISTIILSNNLM 709

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  140 bits (355), Expect = 2e-36
 Identities = 53/384 (13%), Positives = 115/384 (29%), Gaps = 41/384 (10%)

Query: 49  NLSHGCLFGSINS-SSSLFKLVHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENL- 106
           +   G L   I   S ++ +L  L+ +  A + F  +     +            +EN  
Sbjct: 427 DTQIGNLTNRITFISKAIQRLTKLQIIYFANSPF--TYDNIAVDWEDANSDYAKQYENEE 484

Query: 107 --FEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPS 164
             +  L +L  + L +    + +P  + +L  L  +++      +     L     R+  
Sbjct: 485 LSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQ--LKADWTRLAD 542

Query: 165 SLGNLSKLLHLDLSLNELQGEAASFRCFGELPIS--MGNLGSLKELDLSQNGFFGELPTS 222
                 K+    +  N L+          E P S  +  +  L  LD   N        +
Sbjct: 543 DEDTGPKIQIFYMGYNNLE----------EFPASASLQKMVKLGLLDCVHNKV--RHLEA 590

Query: 223 IRNLFSLEKLDLSFNKLSGEFPWSTGNF-SSLKLLNLRSCGFWSKVPH--SIGNFTRLQF 279
                 L  L L +N++  E P     F   ++ L          +P+  +  +   +  
Sbjct: 591 FGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKL-KYIPNIFNAKSVYVMGS 648

Query: 280 LFLGFNNFSGDLLG-----SIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNS 334
           +   +N    +              +   + ++        T      + +  + ++ N 
Sbjct: 649 VDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNL 708

Query: 335 -----YGGTVELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCN 389
                       D    +   L  +D+  N+ + L+    D    TT   +    +    
Sbjct: 709 MTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLS----DDFRATTLPYLSNMDVSYNC 764

Query: 390 LTKFPNFLENQNHLVILNLSDNRI 413
            + FP    N + L    +   R 
Sbjct: 765 FSSFPTQPLNSSQLKAFGIRHQRD 788

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  115 bits (290), Expect = 4e-28
 Identities = 55/403 (13%), Positives = 114/403 (28%), Gaps = 94/403 (23%)

Query: 47  KLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNS--------SEIPPEIINLSRLE- 97
            + L +      +     L+ L  L+ LN+A N   S        + +  +     +++ 
Sbjct: 495 DVELYNCPNMTQL--PDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQI 552

Query: 98  -------LQKPSFENLFEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAM 150
                  L++       +K+  L  L+     +             LT + L   +++  
Sbjct: 553 FYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV--RHLEAFGTNVKLTDLKLDYNQIEE- 609

Query: 151 CSFFLIQISGRIPSSLG-NLSKLLHLDLSLNELQGEAASFRCFGELP--ISMGNLGSLKE 207
                      IP        ++  L  S N+L+           +P   +  ++  +  
Sbjct: 610 -----------IPEDFCAFTDQVEGLGFSHNKLK----------YIPNIFNAKSVYVMGS 648

Query: 208 LDLSQNGFFGELPT-----SIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCG 262
           +D S N    E              +   + LS+N++           S +  + L +  
Sbjct: 649 VDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNL 708

Query: 263 F-------WSKVPHSIGNFTRLQFLFLGFNNFSG-DLLGSIGNLRSLEVIYIAKCNFSGQ 314
                         +  N   L  + L FN  +          L  L  + ++   FS  
Sbjct: 709 MTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS- 767

Query: 315 ITSSLRNLTQLVVLDMAQNSYGG----TVELDVLLTSWKNLEALDISLNRSSVLTKATFD 370
             +   N +QL    +             +    +T+  +L  L I  N           
Sbjct: 768 FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSN----------- 816

Query: 371 ATTDTTSQKIQYRGLRSCNLTKFPNFLENQNHLVILNLSDNRI 413
                             ++ K     +    L IL+++DN  
Sbjct: 817 ------------------DIRKVDE--KLTPQLYILDIADNPN 839

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 93.0 bits (231), Expect = 2e-20
 Identities = 43/268 (16%), Positives = 74/268 (27%), Gaps = 42/268 (15%)

Query: 40  KNTGHVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPPEIINLSRLELQ 99
             T  V  L  SH      I +  +   +  +  ++ + N          I         
Sbjct: 616 AFTDQVEGLGFSH-NKLKYIPNIFNAKSVYVMGSVDFSYNKI--GSEGRNI--------- 663

Query: 100 KPSFENLFEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQIS 159
             S      K  N  T+ L    I           S ++ + L N  + ++         
Sbjct: 664 --SCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPE----NSL 717

Query: 160 GRIPSSLGNLSKLLHLDLSLNELQGEAASFRC---------------FGELPISMGNLGS 204
                +  N   L  +DL  N+L   +  FR                F   P    N   
Sbjct: 718 KPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQ 777

Query: 205 LKELDLSQ------NGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNL 258
           LK   +        N    + PT I    SL +L +  N +  +          L +L++
Sbjct: 778 LKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKL--TPQLYILDI 834

Query: 259 RSCGFWSKVPHSIGNFTRLQFLFLGFNN 286
                 S    S+  +       L ++ 
Sbjct: 835 ADNPNISIDVTSVCPYIEAGMYVLLYDK 862

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 69.9 bits (171), Expect = 5e-13
 Identities = 30/216 (13%), Positives = 61/216 (28%), Gaps = 34/216 (15%)

Query: 39  NKNTGHVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNS------SEIPPEIIN 92
           +    +   + LS+  +      +        +  + L+ N   S              N
Sbjct: 669 DYKGINASTVTLSYNEIQKFP--TELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKN 726

Query: 93  LSRLE--------LQKPSFENLFEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRN 144
              L         L   S +     L  L  +++      S+ P    N S L    +R+
Sbjct: 727 TYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCF-SSFPTQPLNSSQLKAFGIRH 785

Query: 145 CELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGS 204
                       +I  + P+ +     L+ L +  N+++             +       
Sbjct: 786 QRDAEGN-----RILRQWPTGITTCPSLIQLQIGSNDIRK------------VDEKLTPQ 828

Query: 205 LKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLS 240
           L  LD++ N       TS+          L ++K  
Sbjct: 829 LYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 54.5 bits (131), Expect = 4e-08
 Identities = 40/288 (13%), Positives = 89/288 (30%), Gaps = 45/288 (15%)

Query: 171 KLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLE 230
           +     +  N+L  +A       E    + +  +LK +  + +G      +   N     
Sbjct: 240 RGESFTVIDNKLTKDANVPIQLKETAEYIKDYKALKAIWEALDGKNWRYYSGTINNTIHS 299

Query: 231 ---KLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNF 287
                +   +    +      N   +  L+L   G   +VP +IG  T L+ L  G ++ 
Sbjct: 300 LNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSE 359

Query: 288 SGDLLGSIGNLRSLEVIYIAKCNFSGQITS-SLRNLTQLVVLDMAQNSYGGTVELDVL-- 344
           +           + ++    K           L    +L + D+ Q++     E+  +  
Sbjct: 360 TVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKK 419

Query: 345 -----------------LTSW-------KNLEALDISLNRSSVLTKATFDATTDTTS--- 377
                            +T           L+ +  + +  +    A      ++     
Sbjct: 420 DSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQ 479

Query: 378 -----------QKIQYRGLRSCN-LTKFPNFLENQNHLVILNLSDNRI 413
                      + +    L +C  +T+ P+FL +   L  LN++ NR 
Sbjct: 480 YENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRG 527

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  145 bits (369), Expect = 2e-38
 Identities = 75/417 (17%), Positives = 133/417 (31%), Gaps = 55/417 (13%)

Query: 40  KNTGHVIKLNLSHGCLFGSINSS-SSLFKLVHLKWLNLALNDFNSSEIPPEII------N 92
              G +  L L++  L  S+            ++ L+L+ +    S             N
Sbjct: 192 HAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQL--STTSNTTFLGLKWTN 249

Query: 93  LSRLELQKPSFENL----FEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQ 148
           L+ L+L   +   +    F  L  L+   L   +I     H++  L ++ +++L+    +
Sbjct: 250 LTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTK 309

Query: 149 AMCSFFLI----------------------QISGRIPSSLGNLSKLLHLDLSLNELQGEA 186
              S   +                       I G   +    L  L +L LS +      
Sbjct: 310 QSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRT 369

Query: 187 ASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWS 246
            +   F  L  S      L  L+L++N        +   L  LE LDL  N++  E    
Sbjct: 370 LTNETFVSLAHS-----PLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQ 424

Query: 247 T-GNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSG--DLLGSIGNLRSLEV 303
                 ++  + L    +     +S      LQ L L                 LR+L +
Sbjct: 425 EWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTI 484

Query: 304 IYIAKCNFSGQITSSLRNLTQLVVLDMAQN------SYGGTVELDVLLTSWKNLEALDIS 357
           + ++  N +      L  L +L +LD+  N       +         L    +L  L++ 
Sbjct: 485 LDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLE 544

Query: 358 LNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLTKF-PNFLENQNHLVILNLSDNRI 413
            N    +    F         +++   L   NL     +   NQ  L  LNL  N I
Sbjct: 545 SNGFDEIPVEVFKDLF-----ELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLI 596

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  138 bits (350), Expect = 7e-36
 Identities = 78/390 (20%), Positives = 134/390 (34%), Gaps = 42/390 (10%)

Query: 44  HVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPPEIINLSRLE------ 97
           ++  LNL+H  L     ++    +   L  L++  N   S   P     L  L+      
Sbjct: 26  NITVLNLTHNQLRRLPAAN--FTRYSQLTSLDVGFNTI-SKLEPELCQKLPMLKVLNLQH 82

Query: 98  --LQKPSFENLFEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFL 155
             L + S +  F   +NL  L+L   SI     +      +L  + L +           
Sbjct: 83  NELSQLS-DKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN---------- 131

Query: 156 IQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGF 215
             +S     +   L  L  L LS N++Q             + +    SLK+L+LS N  
Sbjct: 132 -GLSSTKLGTQVQLENLQELLLSNNKIQA-------LKSEELDIFANSSLKKLELSSNQI 183

Query: 216 FGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNF---SSLKLLNLRSCGFWSKVPHSIG 272
               P     +  L  L L+  +L              +S++ L+L +    +    +  
Sbjct: 184 KEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFL 243

Query: 273 N--FTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDM 330
              +T L  L L +NN +     S   L  LE  ++   N     + SL  L  +  L++
Sbjct: 244 GLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNL 303

Query: 331 AQNSYGGTVELDVL-------LTSWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYR 383
            ++    ++ L  L           K LE L++  N    +    F    +     +   
Sbjct: 304 KRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNS 363

Query: 384 GLRSCNLTKFPNFLENQNHLVILNLSDNRI 413
                 LT         + L ILNL+ N+I
Sbjct: 364 FTSLRTLTNETFVSLAHSPLHILNLTKNKI 393

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  127 bits (322), Expect = 3e-32
 Identities = 82/396 (20%), Positives = 140/396 (35%), Gaps = 55/396 (13%)

Query: 47  KLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPPEIINLSRLE--------- 97
            L+LS+  L      + S   L  L++  L  N+         +  L  +          
Sbjct: 252 MLDLSYNNLNVVG--NDSFAWLPQLEYFFLEYNNI-QHLFSHSLHGLFNVRYLNLKRSFT 308

Query: 98  LQKPSFENL-------FEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAM 150
            Q  S  +L       F+ L  L+ LN+ D  I     +    L +L ++SL N      
Sbjct: 309 KQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTS-- 366

Query: 151 CSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDL 210
               L  ++     SL + S L  L+L+ N++               +   LG L+ LDL
Sbjct: 367 ----LRTLTNETFVSLAH-SPLHILNLTKNKI---------SKIESDAFSWLGHLEVLDL 412

Query: 211 SQNGFFGELP-TSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWS--KV 267
             N    EL     R L ++ ++ LS+NK       S     SL+ L LR     +    
Sbjct: 413 GLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSS 472

Query: 268 PHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFS--------GQITSSL 319
           P        L  L L  NN +      +  L  LE++ +   N +        G     L
Sbjct: 473 PSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFL 532

Query: 320 RNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDTTSQK 379
           + L+ L +L++  N +        +      L+ +D+ LN  + L  + F+         
Sbjct: 533 KGLSHLHILNLESNGF--DEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQV-----S 585

Query: 380 IQYRGLRSCNLTKFPN--FLENQNHLVILNLSDNRI 413
           ++   L+   +T      F     +L  L++  N  
Sbjct: 586 LKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPF 621

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  125 bits (317), Expect = 1e-31
 Identities = 64/308 (20%), Positives = 103/308 (33%), Gaps = 31/308 (10%)

Query: 110 LSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNL 169
            +N+  LNL    +      N    S LT + +               IS   P     L
Sbjct: 24  PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFN-----------TISKLEPELCQKL 72

Query: 170 SKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSL 229
             L  L+L  NEL   +           +     +L EL L  N              +L
Sbjct: 73  PMLKVLNLQHNELSQLSDK---------TFAFCTNLTELHLMSNSIQKIKNNPFVKQKNL 123

Query: 230 EKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNF--TRLQFLFLGFNNF 287
             LDLS N LS     +     +L+ L L +    +     +  F  + L+ L L  N  
Sbjct: 124 ITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI 183

Query: 288 SGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLR---NLTQLVVLDMAQNSYGGTVELDVL 344
                G    +  L  +++        +T  L      T +  L ++ +    T     L
Sbjct: 184 KEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFL 243

Query: 345 LTSWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLTK-FPNFLENQNHL 403
              W NL  LD+S N  +V+   +F         +++Y  L   N+   F + L    ++
Sbjct: 244 GLKWTNLTMLDLSYNNLNVVGNDSF-----AWLPQLEYFFLEYNNIQHLFSHSLHGLFNV 298

Query: 404 VILNLSDN 411
             LNL  +
Sbjct: 299 RYLNLKRS 306

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  121 bits (306), Expect = 4e-30
 Identities = 74/345 (21%), Positives = 116/345 (33%), Gaps = 40/345 (11%)

Query: 40  KNTGHVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPPEI------INL 93
           +    +  LN+    + G    S+    L++LK+L+L+ +  +   +  E         L
Sbjct: 326 QWLKCLEHLNMEDNDIPGIK--SNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPL 383

Query: 94  SRLELQKPSFENL----FEKLSNLKTLNLGDVSIDSTIPHN-IKNLSSLTFVSLRNCELQ 148
             L L K     +    F  L +L+ L+LG   I   +     + L ++  + L      
Sbjct: 384 HILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYN--- 440

Query: 149 AMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKEL 208
                   +      +S   +  L  L L    L+            P     L +L  L
Sbjct: 441 --------KYLQLTRNSFALVPSLQRLMLRRVALKN-------VDSSPSPFQPLRNLTIL 485

Query: 209 DLSQNGFFGELPTSIRNLFSLEKLDLSFNKLS--------GEFPWSTGNFSSLKLLNLRS 260
           DLS N         +  L  LE LDL  N L+        G   +     S L +LNL S
Sbjct: 486 DLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLES 545

Query: 261 CGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLR 320
            GF         +   L+ + LG NN +        N  SL+ + + K   +        
Sbjct: 546 NGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFG 605

Query: 321 -NLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVL 364
                L  LDM  N +  T E      +W N    +I    S  L
Sbjct: 606 PAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYL 650

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 99.3 bits (248), Expect = 1e-22
 Identities = 37/216 (17%), Positives = 75/216 (34%), Gaps = 9/216 (4%)

Query: 202 LGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSC 261
             ++  L+L+ N        +      L  LD+ FN +S   P        LK+LNL+  
Sbjct: 24  PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 83

Query: 262 GFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRN 321
                   +    T L  L L  N+            ++L  + ++    S     +   
Sbjct: 84  ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQ 143

Query: 322 LTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQ 381
           L  L  L ++ N        ++ + +  +L+ L++S N+    +   F A       ++ 
Sbjct: 144 LENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIG-----RLF 198

Query: 382 YRGLRSCNLTKFPN----FLENQNHLVILNLSDNRI 413
              L +  L                +  L+LS++++
Sbjct: 199 GLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQL 234

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 97.0 bits (242), Expect = 6e-22
 Identities = 37/211 (17%), Positives = 78/211 (36%), Gaps = 9/211 (4%)

Query: 204 SLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGF 263
           S +  D S      ++P  +    ++  L+L+ N+L      +   +S L  L++     
Sbjct: 5   SHEVADCSHLKLT-QVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI 61

Query: 264 WSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLT 323
               P        L+ L L  N  S     +     +L  +++   +      +      
Sbjct: 62  SKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQK 121

Query: 324 QLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYR 383
            L+ LD++ N    +          +NL+ L +S N+   L     D   +++ +K++  
Sbjct: 122 NLITLDLSHNGL--SSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLE-- 177

Query: 384 GLRSCNLTKF-PNFLENQNHLVILNLSDNRI 413
            L S  + +F P        L  L L++ ++
Sbjct: 178 -LSSNQIKEFSPGCFHAIGRLFGLFLNNVQL 207

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 63.1 bits (154), Expect = 6e-11
 Identities = 44/234 (18%), Positives = 74/234 (31%), Gaps = 42/234 (17%)

Query: 48  LNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPPEII----NLSRLELQ---- 99
           L L    L    +S S    L +L  L+L+ N+   + I  +++     L  L+LQ    
Sbjct: 459 LMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNI--ANINDDMLEGLEKLEILDLQHNNL 516

Query: 100 --------KPSFENLFEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMC 151
                           + LS+L  LNL     D       K+L  L  + L         
Sbjct: 517 ARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLN------ 570

Query: 152 SFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLS 211
                 ++    S   N   L  L+L  N +              +      +L ELD+ 
Sbjct: 571 -----NLNTLPASVFNNQVSLKSLNLQKNLITSVEKK--------VFGPAFRNLTELDMR 617

Query: 212 QNGFFGELPTSIRNLFSLEKLDLSFNKLSGE----FPWSTGNFSSLKLLNLRSC 261
            N F     +    +  + +   +  +LS       P        ++L +  SC
Sbjct: 618 FNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPPHYHG-FPVRLFDTSSC 670

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  135 bits (343), Expect = 7e-37
 Identities = 57/312 (18%), Positives = 105/312 (33%), Gaps = 44/312 (14%)

Query: 72  KWLNLALNDFNSSEIPPEIINLSRLELQKPSFENLFE--------KLSNLKTLNLGDVSI 123
           +W      D N         N +  +++  +   L                 L L  V +
Sbjct: 34  QWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPL 93

Query: 124 DSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQ 183
               P     LS L  +++    L              +P ++   + L  L L+ N L+
Sbjct: 94  -PQFPDQAFRLSHLQHMTIDAAGLM------------ELPDTMQQFAGLETLTLARNPLR 140

Query: 184 GEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSI---------RNLFSLEKLDL 234
                      LP S+ +L  L+EL +       ELP  +         + L +L+ L L
Sbjct: 141 ----------ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRL 190

Query: 235 SFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGS 294
            +  +    P S  N  +LK L +R+    S +  +I +  +L+ L L       +    
Sbjct: 191 EWTGIR-SLPASIANLQNLKSLKIRNSPL-SALGPAIHHLPKLEELDLRGCTALRNYPPI 248

Query: 295 IGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEAL 354
            G    L+ + +  C+    +   +  LTQL  LD+          L  L+        +
Sbjct: 249 FGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCV--NLSRLPSLIAQLPANCII 306

Query: 355 DISLNRSSVLTK 366
            +  +  + L +
Sbjct: 307 LVPPHLQAQLDQ 318

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  124 bits (313), Expect = 2e-32
 Identities = 60/356 (16%), Positives = 106/356 (29%), Gaps = 75/356 (21%)

Query: 75  NLALNDFNS-SEIPPEIINLSRLELQKPSFENLFEKLSNLKTLNLGDVSIDS--TIPHNI 131
           NL      +       +    R      +  +   + +N     +   +  +       +
Sbjct: 16  NLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLL 75

Query: 132 KNLSS--LTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASF 189
           ++ +      + LR+  L             + P     LS L H+ +    L       
Sbjct: 76  EDATQPGRVALELRSVPLP------------QFPDQAFRLSHLQHMTIDAAGLM------ 117

Query: 190 RCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGN 249
               ELP +M     L+ L L++N     LP SI +L  L +L +       E P    +
Sbjct: 118 ----ELPDTMQQFAGLETLTLARNPL-RALPASIASLNRLRELSIRACPELTELPEPLAS 172

Query: 250 FS---------SLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRS 300
                      +L+ L L   G    +P SI N   L+ L +  +  S  L  +I +L  
Sbjct: 173 TDASGEHQGLVNLQSLRLEWTGI-RSLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPK 230

Query: 301 LEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVL---LTSWKNLEALDIS 357
           LE + +  C               L  L +   S      L  L   +     LE LD+ 
Sbjct: 231 LEELDLRGCTALRNYPPIFGGRAPLKRLILKDCS-----NLLTLPLDIHRLTQLEKLDLR 285

Query: 358 LNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLTKFPNFLENQNHLVILNLSDNRI 413
                                          NL++ P+ +       I+ +  +  
Sbjct: 286 GCV----------------------------NLSRLPSLIAQLPANCIILVPPHLQ 313

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  115 bits (289), Expect = 3e-29
 Identities = 46/246 (18%), Positives = 87/246 (35%), Gaps = 42/246 (17%)

Query: 63  SSLFKLVHLKWLNLALNDFNSSEIPPEIINLSRLE---LQKPSFENL---FEKLSNLKTL 116
              F+L HL+ + +        E+P  +   + LE   L +     L      L+ L+ L
Sbjct: 98  DQAFRLSHLQHMTIDAAGL--MELPDTMQQFAGLETLTLARNPLRALPASIASLNRLREL 155

Query: 117 NLGDVSIDSTIPHNIKN---------LSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLG 167
           ++      + +P  + +         L +L  + L    +++            +P+S+ 
Sbjct: 156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRS------------LPASIA 203

Query: 168 NLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLF 227
           NL  L  L +  + L            L  ++ +L  L+ELDL         P       
Sbjct: 204 NLQNLKSLKIRNSPLS----------ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRA 253

Query: 228 SLEKLDLS-FNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNN 286
            L++L L   + L    P      + L+ L+LR C   S++P  I        + +   +
Sbjct: 254 PLKRLILKDCSNLL-TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP-PH 311

Query: 287 FSGDLL 292
               L 
Sbjct: 312 LQAQLD 317

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 94.2 bits (235), Expect = 1e-21
 Identities = 51/307 (16%), Positives = 88/307 (28%), Gaps = 71/307 (23%)

Query: 128 PHNIKNLSSLTFVSLRNC-ELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLS-------- 178
            H+  + S    +  +    L+                 L    +  + D +        
Sbjct: 5   HHHHHHSSGRENLYFQGSTALRP------------YHDVLSQWQRHYNADRNRWHSAWRQ 52

Query: 179 --LNELQGEAASFRCFGELPISMGNL--GSLKELDLSQNGFFGELPTSIRNLFSLEKLDL 234
              N  Q E  + R        + +        L+L       + P     L  L+ + +
Sbjct: 53  ANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVP-LPQFPDQAFRLSHLQHMTI 111

Query: 235 SFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNN-------- 286
               L  E P +   F+ L+ L L        +P SI +  RL+ L +            
Sbjct: 112 DAAGLM-ELPDTMQQFAGLETLTLARNPL-RALPASIASLNRLRELSIRACPELTELPEP 169

Query: 287 -FSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLL 345
             S D  G    L +L+ + +        + +S+ NL  L  L +  +       L  L 
Sbjct: 170 LASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSP------LSALG 222

Query: 346 TSWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCN-LTKFPNFLENQNHLV 404
            +  +L  L   L+                         LR C  L  +P     +  L 
Sbjct: 223 PAIHHLPKL-EELD-------------------------LRGCTALRNYPPIFGGRAPLK 256

Query: 405 ILNLSDN 411
            L L D 
Sbjct: 257 RLILKDC 263

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 46.1 bits (110), Expect = 9e-06
 Identities = 22/125 (17%), Positives = 32/125 (25%), Gaps = 10/125 (8%)

Query: 289 GDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSW 348
           G       +    E +Y             L    +    D  +                
Sbjct: 2   GSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWH---------SAWRQ 52

Query: 349 KNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLTKFPNFLENQNHLVILNL 408
            N     I       L KAT D   D T        LRS  L +FP+     +HL  + +
Sbjct: 53  ANSNNPQIETRTGRAL-KATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTI 111

Query: 409 SDNRI 413
               +
Sbjct: 112 DAAGL 116

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  132 bits (333), Expect = 7e-34
 Identities = 78/392 (19%), Positives = 132/392 (33%), Gaps = 65/392 (16%)

Query: 47  KLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPPEII--------------- 91
           KL L +     ++   + +  L  L+   L L +F +     +                 
Sbjct: 204 KLTLRNNFDSLNV-MKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 262

Query: 92  NLSRLELQKPSFENLFEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMC 151
            L+ L+       +LF  L+N+ + +L  V+I      +         + L NC+     
Sbjct: 263 RLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI--ERVKDFSYNFGWQHLELVNCKFGQFP 320

Query: 152 SFFL--------IQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLG 203
           +  L            G    S  +L  L  LDLS N L  +       G    S     
Sbjct: 321 TLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFK-------GCCSQSDFGTT 373

Query: 204 SLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWST-GNFSSLKLLNLRSCG 262
           SLK LDLS NG    + ++   L  LE LD   + L     +S   +  +L  L++    
Sbjct: 374 SLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 432

Query: 263 FWSKVPHSIGNFTRLQFLFLGFNNFSGDLL-GSIGNLRSLEVIYIAKCNFSGQITSSLRN 321
                       + L+ L +  N+F  + L      LR+L  + +++C       ++  +
Sbjct: 433 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 492

Query: 322 LTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQ 381
           L+ L VL+M+ N++              +L+ LD SLN      K               
Sbjct: 493 LSSLQVLNMSHNNFFSLDTF--PYKCLNSLQVLDYSLNHIMTSKKQELQ----------- 539

Query: 382 YRGLRSCNLTKFPNFLENQNHLVILNLSDNRI 413
                              + L  LNL+ N  
Sbjct: 540 ----------------HFPSSLAFLNLTQNDF 555

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  119 bits (301), Expect = 2e-29
 Identities = 54/311 (17%), Positives = 107/311 (34%), Gaps = 30/311 (9%)

Query: 111 SNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLS 170
            + K L+L    +     ++  +   L  + L  C           +I      +  +LS
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-----------EIQTIEDGAYQSLS 76

Query: 171 KLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLE 230
            L  L L+ N +Q  A           +   L SL++L   +          I +L +L+
Sbjct: 77  HLSTLILTGNPIQSLA---------LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 127

Query: 231 KLDLSFNKL-SGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQF----LFLGFN 285
           +L+++ N + S + P    N ++L+ L+L S    S     +    ++      L L  N
Sbjct: 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187

Query: 286 NFSGDLLGSIGNLRSLEVIYIAKCNFSGQITS-SLRNLTQLVVLDMAQNSYGGTVELDVL 344
             +    G+   +R L  + +     S  +    ++ L  L V  +    +     L+  
Sbjct: 188 PMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKF 246

Query: 345 -LTSWKNLEALDISLNRSSVLT-KATFDATTDTTSQKIQYRGLRSCNLTKFPNFLENQNH 402
             ++ + L  L I   R + L                +    L S  + +  +F  N   
Sbjct: 247 DKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFG- 305

Query: 403 LVILNLSDNRI 413
              L L + + 
Sbjct: 306 WQHLELVNCKF 316

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  118 bits (297), Expect = 4e-29
 Identities = 48/276 (17%), Positives = 97/276 (35%), Gaps = 30/276 (10%)

Query: 58  SINSSSSLFKLVHLKWLNLALNDFNSSEIPPEII----NLSRLELQKPSFENL---FEKL 110
              ++ S   L  L++L+L+ N  +      +      +L  L+L       +   F  L
Sbjct: 336 KGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGL 395

Query: 111 SNLKTLNLGDVSIDSTIPHNI-KNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNL 169
             L+ L+    ++      ++  +L +L ++ + +                        L
Sbjct: 396 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT-----------HTRVAFNGIFNGL 444

Query: 170 SKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSL 229
           S L  L ++ N  Q           LP     L +L  LDLSQ       PT+  +L SL
Sbjct: 445 SSLEVLKMAGNSFQE--------NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 496

Query: 230 EKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGN-FTRLQFLFLGFNNFS 288
           + L++S N       +     +SL++L+       +     + +  + L FL L  N+F+
Sbjct: 497 QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 556

Query: 289 GD--LLGSIGNLRSLEVIYIAKCNFSGQITSSLRNL 322
                   +  ++    + +          S  + +
Sbjct: 557 CTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGM 592

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  117 bits (295), Expect = 1e-28
 Identities = 74/406 (18%), Positives = 134/406 (33%), Gaps = 62/406 (15%)

Query: 44  HVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPPEIINLSRLE------ 97
               L+LS   L      S S F    L+ L+L+  +   +       +LS L       
Sbjct: 29  STKNLDLSFNPLRHLG--SYSFFSFPELQVLDLSRCEI-QTIEDGAYQSLSHLSTLILTG 85

Query: 98  --LQKPSFENLFEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFL 155
             +Q  +    F  LS+L+ L   + ++ S     I +L +L  +++ +  +Q       
Sbjct: 86  NPIQSLA-LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ------- 137

Query: 156 IQISGRIPSSLGNLSKLLHLDLSLNELQG-EAASFRCFGELPISMGNLG----------- 203
              S ++P    NL+ L HLDLS N++Q       R   ++P+   +L            
Sbjct: 138 ---SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP 194

Query: 204 ------SLKELDLSQNGFFGELP-TSIRNLFSLEKLDLSFNKLSGEFPWST---GNFSSL 253
                  L +L L  N     +  T I+ L  LE   L   +   E             L
Sbjct: 195 GAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL 254

Query: 254 KLLNLRSC------GFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIA 307
             L +          +   +       T +    L         +         + + + 
Sbjct: 255 CNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER--VKDFSYNFGWQHLELV 312

Query: 308 KCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTKA 367
            C F    T  L++L +L        +    V+L        +LE LD+S N    L+  
Sbjct: 313 NCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDL-------PSLEFLDLSRNG---LSFK 362

Query: 368 TFDATTDTTSQKIQYRGLRSCNLTKFPNFLENQNHLVILNLSDNRI 413
              + +D  +  ++Y  L    +    +       L  L+   + +
Sbjct: 363 GCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNL 408

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  105 bits (264), Expect = 1e-24
 Identities = 53/260 (20%), Positives = 89/260 (34%), Gaps = 22/260 (8%)

Query: 162 IPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPT 221
           IP +L       +LDLS N L+              S  +   L+ LDLS+         
Sbjct: 22  IPDNL--PFSTKNLDLSFNPLRHL---------GSYSFFSFPELQVLDLSRCEIQTIEDG 70

Query: 222 SIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLF 281
           + ++L  L  L L+ N +      +    SSL+ L        S     IG+   L+ L 
Sbjct: 71  AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN 130

Query: 282 LGFNNF-SGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQL----VVLDMAQNSYG 336
           +  N   S  L     NL +LE + ++         + LR L Q+    + LD++ N   
Sbjct: 131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN 190

Query: 337 GTVELDVLLTSWKNLEALDISLNRSSV-LTKATFDATTDTTSQKIQYRGLRSCNLTKFPN 395
               +         L  L +  N  S+ + K            ++     R+    +  +
Sbjct: 191 F---IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFD 247

Query: 396 F--LENQNHLVILNLSDNRI 413
              LE   +L I       +
Sbjct: 248 KSALEGLCNLTIEEFRLAYL 267

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 96.3 bits (240), Expect = 1e-21
 Identities = 45/208 (21%), Positives = 80/208 (38%), Gaps = 5/208 (2%)

Query: 206 KELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWS 265
                 +  F+ ++P ++   FS + LDLSFN L     +S  +F  L++L+L  C   +
Sbjct: 10  ITYQCMELNFY-KIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT 66

Query: 266 KVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQL 325
               +  + + L  L L  N      LG+   L SL+ +   + N +      + +L  L
Sbjct: 67  IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 126

Query: 326 VVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGL 385
             L++A N      +L    ++  NLE LD+S N+   +               +    L
Sbjct: 127 KELNVAHNLIQS-FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD-L 184

Query: 386 RSCNLTKFPNFLENQNHLVILNLSDNRI 413
               +         +  L  L L +N  
Sbjct: 185 SLNPMNFIQPGAFKEIRLHKLTLRNNFD 212

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  126 bits (319), Expect = 5e-32
 Identities = 82/368 (22%), Positives = 127/368 (34%), Gaps = 43/368 (11%)

Query: 62  SSSLFKLVHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENL---------FEKLS- 111
               F     + LN      N   I   + N +   L   +FE++         FE L  
Sbjct: 195 EPGAFDSAVFQSLNFGGTQ-NLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCE 253

Query: 112 -NLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLS 170
            +++++NL      +   +     S L  + L    L              +PS L  LS
Sbjct: 254 MSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS------------ELPSGLVGLS 301

Query: 171 KLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPT-SIRNLFSL 229
            L  L LS N+ +             IS  N  SL  L +  N    EL T  + NL +L
Sbjct: 302 TLKKLVLSANKFENL---------CQISASNFPSLTHLSIKGNTKRLELGTGCLENLENL 352

Query: 230 EKLDLSFNKL--SGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNF 287
            +LDLS + +  S        N S L+ LNL      S    +     +L+ L L F   
Sbjct: 353 RELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRL 412

Query: 288 SG-DLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNS-YGGTVELDVLL 345
              D      NL  L+V+ ++              L  L  L++  N    G ++    L
Sbjct: 413 KVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSL 472

Query: 346 TSWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLTKFPNFLENQNHLVI 405
            +   LE L +S    S + +  F +        + +  L    LT       +    + 
Sbjct: 473 QTLGRLEILVLSFCDLSSIDQHAFTSLK-----MMNHVDLSHNRLTSSSIEALSHLKGIY 527

Query: 406 LNLSDNRI 413
           LNL+ N I
Sbjct: 528 LNLASNHI 535

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  122 bits (307), Expect = 2e-30
 Identities = 82/387 (21%), Positives = 133/387 (34%), Gaps = 53/387 (13%)

Query: 47  KLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPP---------EIINLSRLE 97
            LN         I        +  L        D                 E INL +  
Sbjct: 206 SLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHY 265

Query: 98  LQKPSFENLFEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQ 157
               S  N F   S L+ L+L    + S +P  +  LS+L  + L              +
Sbjct: 266 FFNIS-SNTFHCFSGLQELDLTATHL-SELPSGLVGLSTLKKLVLSAN-----------K 312

Query: 158 ISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQN--GF 215
                  S  N   L HL +  N  + E             + NL +L+ELDLS +    
Sbjct: 313 FENLCQISASNFPSLTHLSIKGNTKRLE--------LGTGCLENLENLRELDLSHDDIET 364

Query: 216 FGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSI-GNF 274
                  +RNL  L+ L+LS+N+       +      L+LL+L       K   S   N 
Sbjct: 365 SDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNL 424

Query: 275 TRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSG---QITSSLRNLTQLVVLDMA 331
             L+ L L  +            L +L+ + +   +F     Q T+SL+ L +L +L ++
Sbjct: 425 HLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLS 484

Query: 332 QNSYGGTVELDVL----LTSWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRS 387
                    L  +     TS K +  +D+S NR +  +          +  K  Y  L S
Sbjct: 485 FCD------LSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEAL------SHLKGIYLNLAS 532

Query: 388 CNLTKF-PNFLENQNHLVILNLSDNRI 413
            +++   P+ L   +    +NL  N +
Sbjct: 533 NHISIILPSLLPILSQQRTINLRQNPL 559

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  121 bits (306), Expect = 3e-30
 Identities = 71/387 (18%), Positives = 132/387 (34%), Gaps = 39/387 (10%)

Query: 41  NTGHVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPPEIINLSRLE--- 97
            T  +  L+  +      + S   +  L     L+L LN  + + I P   + +  +   
Sbjct: 151 PTEKLKVLDFQN-NAIHYL-SKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLN 208

Query: 98  -----LQKPSFENL-FEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMC 151
                     F+ L    + +L      D+  +   P   + L  ++  S+         
Sbjct: 209 FGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESIN-------- 260

Query: 152 SFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLS 211
                       ++    S L  LDL+   L           ELP  +  L +LK+L LS
Sbjct: 261 -LQKHYFFNISSNTFHCFSGLQELDLTATHLS----------ELPSGLVGLSTLKKLVLS 309

Query: 212 QNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWST-GNFSSLKLLNLRSCGFWSK--VP 268
            N F      S  N  SL  L +  N    E       N  +L+ L+L      +     
Sbjct: 310 ANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCN 369

Query: 269 HSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQIT-SSLRNLTQLVV 327
             + N + LQ L L +N        +      LE++ +A      +   S  +NL  L V
Sbjct: 370 LQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKV 429

Query: 328 LDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRS 387
           L+++ +     +  + L      L+ L++  N          ++        ++   L  
Sbjct: 430 LNLSHSLL--DISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGR--LEILVLSF 485

Query: 388 CNLTKFP-NFLENQNHLVILNLSDNRI 413
           C+L+    +   +   +  ++LS NR+
Sbjct: 486 CDLSSIDQHAFTSLKMMNHVDLSHNRL 512

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  115 bits (290), Expect = 4e-28
 Identities = 62/399 (15%), Positives = 119/399 (29%), Gaps = 49/399 (12%)

Query: 44  HVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPPEII----NLSRLELQ 99
               L  S   +  +I +++   +L++L +L+L         I  +       L  L L 
Sbjct: 34  STECLEFSF-NVLPTIQNTT-FSRLINLTFLDLTRCQI--YWIHEDTFQSQHRLDTLVLT 89

Query: 100 KPSFENL----FEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFL 155
                 +          LK L      I S     + N  +L  + L +           
Sbjct: 90  ANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSN---------- 139

Query: 156 IQISGRIPSSLGNLSKLLHLDLSLNELQG-EAASFRCFGEL---------------PISM 199
             IS           KL  LD   N +            +                    
Sbjct: 140 -HISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGA 198

Query: 200 GNLGSLKELDLSQNGFFGELPTSIRN--LFSLEKLDLSFNKLSGEFPWSTGNFS--SLKL 255
            +    + L+         +   ++N  + SL              P         S++ 
Sbjct: 199 FDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVES 258

Query: 256 LNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQI 315
           +NL+   F++   ++   F+ LQ L L   + S +L   +  L +L+ + ++   F    
Sbjct: 259 INLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLC 317

Query: 316 TSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDT 375
             S  N   L  L +  N+    +     L + +NL  LD+S +    +  +        
Sbjct: 318 QISASNFPSLTHLSIKGNTKRLELGTGC-LENLENLRELDLSHDD---IETSDCCNLQLR 373

Query: 376 TSQKIQYRGLRSCNLTKF-PNFLENQNHLVILNLSDNRI 413
               +Q   L             +    L +L+L+  R+
Sbjct: 374 NLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRL 412

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  112 bits (282), Expect = 4e-27
 Identities = 51/307 (16%), Positives = 100/307 (32%), Gaps = 28/307 (9%)

Query: 110 LSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNL 169
            ++ + L      + +        L +LTF+ L  C           QI      +  + 
Sbjct: 32  PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRC-----------QIYWIHEDTFQSQ 80

Query: 170 SKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSL 229
            +L  L L+ N L   A           ++    +LK L   Q G        + N  +L
Sbjct: 81  HRLDTLVLTANPLIFMA---------ETALSGPKALKHLFFIQTGISSIDFIPLHNQKTL 131

Query: 230 EKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFN-NFS 288
           E L L  N +S            LK+L+ ++          + +  +   L L  N N  
Sbjct: 132 ESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDI 191

Query: 289 GDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRN--LTQLVVLDMAQNSYGGTVELDVLLT 346
             +     +    + +          I   L+N  +  L +                   
Sbjct: 192 AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGL 251

Query: 347 SWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLTKFPNFLENQNHLVIL 406
              ++E++++  +    ++  TF   +      +Q   L + +L++ P+ L   + L  L
Sbjct: 252 CEMSVESINLQKHYFFNISSNTFHCFS-----GLQELDLTATHLSELPSGLVGLSTLKKL 306

Query: 407 NLSDNRI 413
            LS N+ 
Sbjct: 307 VLSANKF 313

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  110 bits (276), Expect = 3e-26
 Identities = 62/318 (19%), Positives = 118/318 (37%), Gaps = 39/318 (12%)

Query: 44  HVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPPEIINLSRLE---LQK 100
            V  +NL     F    SS++      L+ L+L       SE+P  ++ LS L+   L  
Sbjct: 255 SVESINLQKHYFFNI--SSNTFHCFSGLQELDLTATHL--SELPSGLVGLSTLKKLVLSA 310

Query: 101 PSFENL----FEKLSNLKTLNLGDVSIDSTIPHN-IKNLSSLTFVSLRNCELQAMCSFFL 155
             FENL         +L  L++   +    +    ++NL +L  + L + +++      L
Sbjct: 311 NKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNL 370

Query: 156 I---------------QISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMG 200
                           +       +     +L  LDL+   L+ +        +      
Sbjct: 371 QLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVK--------DAQSPFQ 422

Query: 201 NLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNF---SSLKLLN 257
           NL  LK L+LS +            L +L+ L+L  N         T +      L++L 
Sbjct: 423 NLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILV 482

Query: 258 LRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITS 317
           L  C   S   H+  +   +  + L  N  +   + ++ +L+ +  + +A  + S  + S
Sbjct: 483 LSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPS 541

Query: 318 SLRNLTQLVVLDMAQNSY 335
            L  L+Q   +++ QN  
Sbjct: 542 LLPILSQQRTINLRQNPL 559

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  100 bits (251), Expect = 5e-23
 Identities = 47/260 (18%), Positives = 92/260 (35%), Gaps = 28/260 (10%)

Query: 40  KNTGHVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPPEII----NLSR 95
            N   +  L++        +  +  L  L +L+ L+L+ +D  +S+     +    +L  
Sbjct: 322 SNFPSLTHLSIKGNTKRLEL-GTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQS 380

Query: 96  LELQKPSFENL----FEKLSNLKTLNLGDVSIDSTIPHNI-KNLSSLTFVSLRNCELQAM 150
           L L      +L    F++   L+ L+L    +      +  +NL  L  ++L +      
Sbjct: 381 LNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHS----- 435

Query: 151 CSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDL 210
                  +          L  L HL+L  N             +   S+  LG L+ L L
Sbjct: 436 ------LLDISSEQLFDGLPALQHLNLQGNHFPKG------NIQKTNSLQTLGRLEILVL 483

Query: 211 SQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHS 270
           S          +  +L  +  +DLS N+L+     +  +   +  LNL S      +P  
Sbjct: 484 SFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSL 542

Query: 271 IGNFTRLQFLFLGFNNFSGD 290
           +   ++ + + L  N     
Sbjct: 543 LPILSQQRTINLRQNPLDCT 562

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  100 bits (251), Expect = 5e-23
 Identities = 42/258 (16%), Positives = 83/258 (32%), Gaps = 22/258 (8%)

Query: 161 RIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELP 220
            IP +L   +    L+ S N L               +   L +L  LDL++   +    
Sbjct: 26  EIPGTL--PNSTECLEFSFNVLPTI---------QNTTFSRLINLTFLDLTRCQIYWIHE 74

Query: 221 TSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFL 280
            + ++   L+ L L+ N L      +     +LK L     G  S     + N   L+ L
Sbjct: 75  DTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESL 134

Query: 281 FLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQL--VVLDMAQNSYGGT 338
           +LG N+ S   L        L+V+              + +L Q   + L++  N     
Sbjct: 135 YLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGND---I 191

Query: 339 VELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLTKFPNFLE 398
             ++         ++L+    +        F    ++T Q +        +       + 
Sbjct: 192 AGIEPGAFDSAVFQSLNFGGTQ---NLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVF 248

Query: 399 N---QNHLVILNLSDNRI 413
               +  +  +NL  +  
Sbjct: 249 EGLCEMSVESINLQKHYF 266

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  116 bits (292), Expect = 3e-28
 Identities = 58/307 (18%), Positives = 95/307 (30%), Gaps = 30/307 (9%)

Query: 44  HVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSF 103
            + +  L++   F   +       L ++  ++LA       E  P+      L + +   
Sbjct: 262 TIDEFRLTYTNDFS--DDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQL 319

Query: 104 ENL-FEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRI 162
           +      L  LK+L L       +I      L SL+++ L             +  SG  
Sbjct: 320 KQFPTLDLPFLKSLTLTMNKG--SISFKKVALPSLSYLDLSRNA---------LSFSGCC 368

Query: 163 PSSLGNLSKLLHLDLSLNELQGEAASFRCFGEL---------------PISMGNLGSLKE 207
             S    + L HLDLS N     +A+F    EL                 +  +L  L  
Sbjct: 369 SYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLY 428

Query: 208 LDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWST-GNFSSLKLLNLRSCGFWSK 266
           LD+S      +       L SL  L ++ N        +   N ++L  L+L  C     
Sbjct: 429 LDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQI 488

Query: 267 VPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLV 326
                    RLQ L +  NN           L SL  +  +                 L 
Sbjct: 489 SWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLA 548

Query: 327 VLDMAQN 333
             ++  N
Sbjct: 549 FFNLTNN 555

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  112 bits (283), Expect = 4e-27
 Identities = 76/395 (19%), Positives = 120/395 (30%), Gaps = 73/395 (18%)

Query: 47  KLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENL 106
           +L L       +I   + L  L  L    L L +F                L   + +  
Sbjct: 208 ELTLRGNFNSSNI-MKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEF 266

Query: 107 --------------FEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCS 152
                         F  L+N+  ++L  VSI      ++        +S+  C+L+   +
Sbjct: 267 RLTYTNDFSDDIVKFHCLANVSAMSLAGVSI--KYLEDVPKHFKWQSLSIIRCQLKQFPT 324

Query: 153 FFLIQI--------SGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGS 204
             L  +         G I      L  L +LDLS N L          G    S     S
Sbjct: 325 LDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSF-------SGCCSYSDLGTNS 377

Query: 205 LKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWST-GNFSSLKLLNLRSCGF 263
           L+ LDLS NG    +  +   L  L+ LD   + L     +S   +   L  L++     
Sbjct: 378 LRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNT 436

Query: 264 WSKVPHSIGNFTRLQFLFLGFNNFSGDLL-GSIGNLRSLEVIYIAKCNFSGQITSSLRNL 322
                      T L  L +  N+F  + L     N  +L  + ++KC            L
Sbjct: 437 KIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTL 496

Query: 323 TQLVVLDMAQNSYGGTVELDVL----LTSWKNLEALDISLNRSSVLTKATFDATTDTTSQ 378
            +L +L+M+ N+      L  L         +L  LD S NR                  
Sbjct: 497 HRLQLLNMSHNN------LLFLDSSHYNQLYSLSTLDCSFNRIETS-------------- 536

Query: 379 KIQYRGLRSCNLTKFPNFLENQNHLVILNLSDNRI 413
                                   L   NL++N +
Sbjct: 537 --------------KGILQHFPKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  111 bits (279), Expect = 1e-26
 Identities = 77/374 (20%), Positives = 132/374 (35%), Gaps = 32/374 (8%)

Query: 47  KLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENL 106
            L++S       I   +  F+ + L  L L  N  +S+ +   + NL+ L + +      
Sbjct: 185 SLDMSL-NPIDFIQDQA--FQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLI-LGE 240

Query: 107 FEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISG---RIP 163
           F+   NL+      +     +  +   L+     S    +   + +   + ++G   +  
Sbjct: 241 FKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYL 300

Query: 164 SSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSI 223
             +    K   L +   +L+                 +L  LK L L+ N   G +    
Sbjct: 301 EDVPKHFKWQSLSIIRCQLKQ------------FPTLDLPFLKSLTLTMNK--GSISFKK 346

Query: 224 RNLFSLEKLDLSFNKLS--GEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLF 281
             L SL  LDLS N LS  G   +S    +SL+ L+L   G    +  +      LQ L 
Sbjct: 347 VALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGA-IIMSANFMGLEELQHLD 405

Query: 282 LGFNNFSG-DLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVE 340
              +         +  +L  L  + I+  N           LT L  L MA NS+     
Sbjct: 406 FQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTL 465

Query: 341 LDVLLTSWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLTKFP-NFLEN 399
            +V   +  NL  LD+S  +   ++   FD        ++Q   +   NL     +    
Sbjct: 466 SNVFANT-TNLTFLDLSKCQLEQISWGVFDTLH-----RLQLLNMSHNNLLFLDSSHYNQ 519

Query: 400 QNHLVILNLSDNRI 413
              L  L+ S NRI
Sbjct: 520 LYSLSTLDCSFNRI 533

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  108 bits (273), Expect = 6e-26
 Identities = 68/405 (16%), Positives = 128/405 (31%), Gaps = 61/405 (15%)

Query: 44  HVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPPEII----NLSRLELQ 99
               ++LS       +  S S      L+WL+L+  +     I  +      +LS L L 
Sbjct: 33  STKNIDLSF-NPLKIL-KSYSFSNFSELQWLDLSRCEI--ETIEDKAWHGLHHLSNLILT 88

Query: 100 KPSFENL----FEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFL 155
               ++     F  L++L+ L   +  + S     I  L +L  +++ +  +        
Sbjct: 89  GNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIH------- 141

Query: 156 IQISGRIPSSLGNLSKLLHLDLSLNELQG-EAASFRCFGELPISMGNLG----------- 203
              S ++P+   NL+ L+H+DLS N +Q       +   E P    +L            
Sbjct: 142 ---SCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQD 198

Query: 204 ------SLKELDLSQNGFFGELP-TSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLK-- 254
                  L EL L  N     +  T ++NL  L    L   +   E        S ++  
Sbjct: 199 QAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGL 258

Query: 255 ------LLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAK 308
                    L     +S           +  + L   +     L  +      + + I +
Sbjct: 259 CDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY--LEDVPKHFKWQSLSIIR 316

Query: 309 CNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTKAT 368
           C      T  L  L     L +  N       +     +  +L  LD+S N  S     +
Sbjct: 317 CQLKQFPTLDLPFLK---SLTLTMNK----GSISFKKVALPSLSYLDLSRNALSFSGCCS 369

Query: 369 FDATTDTTSQKIQYRGLRSCNLTKFPNFLENQNHLVILNLSDNRI 413
           +   +D  +  +++  L                 L  L+   + +
Sbjct: 370 Y---SDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTL 411

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 98.6 bits (246), Expect = 2e-22
 Identities = 48/310 (15%), Positives = 100/310 (32%), Gaps = 29/310 (9%)

Query: 111 SNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLS 170
           S+ K ++L    +     ++  N S L ++ L  C           +I      +   L 
Sbjct: 32  SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRC-----------EIETIEDKAWHGLH 80

Query: 171 KLLHLDLSLNELQG-EAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSL 229
            L +L L+ N +Q     SF            L SL+ L   +          I  L +L
Sbjct: 81  HLSNLILTGNPIQSFSPGSFS----------GLTSLENLVAVETKLASLESFPIGQLITL 130

Query: 230 EKLDLSFNKLSG-EFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFN--- 285
           +KL+++ N +   + P    N ++L  ++L      +   + +        + L  +   
Sbjct: 131 KKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSL 190

Query: 286 NFSGDLLGSIGNLRSLEVIYIAKCNFSGQITS-SLRNLTQLVVLDMAQNSYGGTVELDVL 344
           N    +         L  + +     S  I    L+NL  L V  +    +     L++ 
Sbjct: 191 NPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIF 250

Query: 345 -LTSWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLTKFPNFLENQNHL 403
             +  + L  + I   R +     + D         +    L   ++    +        
Sbjct: 251 EPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDV-PKHFKW 309

Query: 404 VILNLSDNRI 413
             L++   ++
Sbjct: 310 QSLSIIRCQL 319

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 88.6 bits (220), Expect = 4e-19
 Identities = 43/206 (20%), Positives = 69/206 (33%), Gaps = 5/206 (2%)

Query: 208 LDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKV 267
                     ++P  I    S + +DLSFN L     +S  NFS L+ L+L  C   +  
Sbjct: 16  YQCMDQKLS-KVPDDI--PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIE 72

Query: 268 PHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVV 327
             +      L  L L  N       GS   L SLE +   +   +   +  +  L  L  
Sbjct: 73  DKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKK 132

Query: 328 LDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRS 387
           L++A N      +L    ++  NL  +D+S N    +T        +          +  
Sbjct: 133 LNVAHNFIHS-CKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQV-NLSLDMSL 190

Query: 388 CNLTKFPNFLENQNHLVILNLSDNRI 413
             +    +       L  L L  N  
Sbjct: 191 NPIDFIQDQAFQGIKLHELTLRGNFN 216

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  111 bits (281), Expect = 7e-28
 Identities = 66/379 (17%), Positives = 128/379 (33%), Gaps = 61/379 (16%)

Query: 55  LFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENL--FEKLSN 112
           L   IN       L       L            E+ ++++L +      ++   E L+N
Sbjct: 8   LPAPINQIFPDADLAEGIRAVLQKASVTDVVTQEELESITKLVVAGEKVASIQGIEYLTN 67

Query: 113 LKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKL 172
           L+ LNL    I    P  + NL  LT + +   ++                S+L NL+ L
Sbjct: 68  LEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT-------------DISALQNLTNL 112

Query: 173 LHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKL 232
             L L+ + +                + NL  +  L+L  N       + + N+  L  L
Sbjct: 113 RELYLNEDNISD-----------ISPLANLTKMYSLNLGAN-HNLSDLSPLSNMTGLNYL 160

Query: 233 DLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLL 292
            ++ +K+    P    N + L  L+L       +    + + T L +     N  +   +
Sbjct: 161 TVTESKVKDVTPI--ANLTDLYSLSLNYNQI--EDISPLASLTSLHYFTAYVNQITD--I 214

Query: 293 GSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQN------SYGGTVELDVL-- 344
             + N+  L  + I     +    S L NL+QL  L++  N      +     +L +L  
Sbjct: 215 TPVANMTRLNSLKIGNNKITD--LSPLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNV 272

Query: 345 ----------LTSWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLTKFP 394
                     L +   L +L ++ N+            T      +    L   ++T   
Sbjct: 273 GSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLT-----NLTTLFLSQNHITDIR 327

Query: 395 NFLENQNHLVILNLSDNRI 413
             L + + +   + ++  I
Sbjct: 328 P-LASLSKMDSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  103 bits (259), Expect = 7e-25
 Identities = 61/316 (19%), Positives = 119/316 (37%), Gaps = 43/316 (13%)

Query: 47  KLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENL 106
            LNL+       I   S L  LV L  L +  N          + NL  L L + +  ++
Sbjct: 70  YLNLNGN----QITDISPLSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDI 125

Query: 107 --FEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPS 164
                L+ + +LNLG      +    + N++ L ++++   +++ +             +
Sbjct: 126 SPLANLTKMYSLNLGANHN-LSDLSPLSNMTGLNYLTVTESKVKDV-------------T 171

Query: 165 SLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIR 224
            + NL+ L  L L+ N+++               + +L SL       N       T + 
Sbjct: 172 PIANLTDLYSLSLNYNQIED-----------ISPLASLTSLHYFTAYVNQI--TDITPVA 218

Query: 225 NLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGF 284
           N+  L  L +  NK++   P    N S L  L + +        +++ + T+L+ L +G 
Sbjct: 219 NMTRLNSLKIGNNKITDLSPL--ANLSQLTWLEIGTNQI--SDINAVKDLTKLKMLNVGS 274

Query: 285 NNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVL 344
           N  S   +  + NL  L  +++       +    +  LT L  L ++QN       L  L
Sbjct: 275 NQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASL 332

Query: 345 LTSWKNLEALDISLNR 360
                 +++ D +   
Sbjct: 333 ----SKMDSADFANQV 344

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 58.7 bits (143), Expect = 1e-09
 Identities = 32/209 (15%), Positives = 65/209 (31%), Gaps = 43/209 (20%)

Query: 205 LKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFW 264
              L         ++     +L    +  L    ++           S+  L +      
Sbjct: 2   AATLATLPAPI-NQI-FPDADLAEGIRAVLQKASVTDVVTQE--ELESITKLVVAGEKVA 57

Query: 265 SKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQ 324
           S     I   T L++L L  N  +   +  + NL  L  +YI     +    S+L+NLT 
Sbjct: 58  S--IQGIEYLTNLEYLNLNGNQITD--ISPLSNLVKLTNLYIGTNKIT--DISALQNLTN 111

Query: 325 LVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRG 384
           L  L + +++      L  L      + +L++  N                         
Sbjct: 112 LRELYLNEDNISDISPLANL----TKMYSLNLGAN------------------------- 142

Query: 385 LRSCNLTKFPNFLENQNHLVILNLSDNRI 413
               +     + L N   L  L ++++++
Sbjct: 143 ----HNLSDLSPLSNMTGLNYLTVTESKV 167

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  112 bits (283), Expect = 4e-27
 Identities = 70/426 (16%), Positives = 138/426 (32%), Gaps = 55/426 (12%)

Query: 40  KNTGHVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPPEIINLSRLE-- 97
           +   H+ +L L    L  ++        L  L  L+L+ N   S  + P    L+ L+  
Sbjct: 94  QGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSI 153

Query: 98  ---------LQKPSFENLFEKLSNLKTLNLGDVSIDSTIPHNIKN-LSSLTFVSLR---- 143
                    + +   E L  +   L   +L   S+ S +  +    ++    + L     
Sbjct: 154 DFSSNQIFLVCEHELEPL--QGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDV 211

Query: 144 --NCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQG-EAASFRCFGEL----- 195
             N     +   F   IS     SL     ++      + ++  +  +F           
Sbjct: 212 SGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHL 271

Query: 196 -----------PISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFP 244
                            L  LK L+L+ N        +   L +L+ L+LS+N L   + 
Sbjct: 272 DLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYS 331

Query: 245 WSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNF--------------SGD 290
            +      +  ++L+          +     +LQ L L  N                SG+
Sbjct: 332 SNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGN 391

Query: 291 LLGSIGNL-RSLEVIYIAKCNFSG-QITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSW 348
            L ++  +  +  +I++++       I   L  +  L +L + QN +  +   D   +  
Sbjct: 392 KLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRF-SSCSGDQTPSEN 450

Query: 349 KNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLTKFPN-FLENQNHLVILN 407
            +LE L +  N   +  +             +Q   L    L   P     +   L  L+
Sbjct: 451 PSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLS 510

Query: 408 LSDNRI 413
           L+ NR+
Sbjct: 511 LNSNRL 516

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  101 bits (253), Expect = 2e-23
 Identities = 75/431 (17%), Positives = 140/431 (32%), Gaps = 69/431 (16%)

Query: 40  KNTGHVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNS---------SEIPPEI 90
           +N   + +L+LS      S+    S  KL  LK ++ + N                    
Sbjct: 120 RNLKALTRLDLSK-NQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSF 178

Query: 91  INLSRLELQK---PSFENLFEKLSN--LKTLNLGDVSIDSTIPHNIKN-LSSLTFVSLRN 144
            +L+   L       +        N  L+ L++        I  N  N +S     SL  
Sbjct: 179 FSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLIL 238

Query: 145 CELQAMCSFFLIQISGRIPSSLGNL--SKLLHLDLSLNELQG-EAASFRCFGEL------ 195
                   F    I     ++   L  S + HLDLS   +    +  F    +L      
Sbjct: 239 AHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLA 298

Query: 196 --------PISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWST 247
                     +   L +L+ L+LS N       ++   L  +  +DL  N ++     + 
Sbjct: 299 YNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTF 358

Query: 248 GNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSG------------------ 289
                L+ L+LR          +I     +  +FL  N                      
Sbjct: 359 KFLEKLQTLDLRDNAL-----TTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRL 413

Query: 290 ---DLLGSIGNLRSLEVIYIAKCNFSG-QITSSLRNLTQLVVLDMAQNSYGGTVELDVLL 345
              D+L  +  +  L+++ + +  FS      +      L  L + +N      E ++  
Sbjct: 414 ENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCW 473

Query: 346 TSWK---NLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLTKFPNFLENQNH 402
             ++   +L+ L ++ N  + L    F   T      ++   L S  LT   +      +
Sbjct: 474 DVFEGLSHLQVLYLNHNYLNSLPPGVFSHLT-----ALRGLSLNSNRLTVLSHND-LPAN 527

Query: 403 LVILNLSDNRI 413
           L IL++S N++
Sbjct: 528 LEILDISRNQL 538

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 92.9 bits (231), Expect = 2e-20
 Identities = 80/393 (20%), Positives = 125/393 (31%), Gaps = 66/393 (16%)

Query: 44  HVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSF 103
              +L LS      ++ ++SS   L  L+ L L         I                 
Sbjct: 25  TTERLLLSF-NYIRTV-TASSFPFLEQLQLLELGSQY-TPLTIDK--------------- 66

Query: 104 ENLFEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIP 163
              F  L NL+ L+LG   I    P   + L  L  + L  C L                
Sbjct: 67  -EAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVL---------KD 116

Query: 164 SSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSI 223
               NL  L  LDLS N+++           L  S G L SLK +D S N  F      +
Sbjct: 117 GYFRNLKALTRLDLSKNQIRS--------LYLHPSFGKLNSLKSIDFSSNQIFLVCEHEL 168

Query: 224 RNLF--SLEKLDLSFNKLSGEFPWSTGNFS------SLKLLNLRSCGFWSKVP------- 268
             L   +L    L+ N L        G          L++L++   G+   +        
Sbjct: 169 EPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAI 228

Query: 269 -----HSIGNFTRLQFLFLGFNNFSGDLLGSIGNLR--SLEVIYIAKCNFSGQITSSLRN 321
                 S+     +     GF+N       +   L   S+  + ++        +     
Sbjct: 229 SKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFET 288

Query: 322 LTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQ 381
           L  L VL++A N        D       NL+ L++S N    L  + F         K+ 
Sbjct: 289 LKDLKVLNLAYNKINKIA--DEAFYGLDNLQVLNLSYNLLGELYSSNF-----YGLPKVA 341

Query: 382 YRGLRSCNLTKFP-NFLENQNHLVILNLSDNRI 413
           Y  L+  ++        +    L  L+L DN +
Sbjct: 342 YIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL 374

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 86.4 bits (214), Expect = 2e-18
 Identities = 57/321 (17%), Positives = 104/321 (32%), Gaps = 42/321 (13%)

Query: 102 SFENLFEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGR 161
           +   + + L+  + L L    I +    +   L  L  + L +                 
Sbjct: 15  NLTQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQ-----------YTPLT 63

Query: 162 I-PSSLGNLSKLLHLDLSLNELQG-EAASFRCFGELPISMGNLGSLKELDLSQNGFFGEL 219
           I   +  NL  L  LDL  +++      +F+           L  L EL L   G    +
Sbjct: 64  IDKEAFRNLPNLRILDLGSSKIYFLHPDAFQ----------GLFHLFELRLYFCGLSDAV 113

Query: 220 --PTSIRNLFSLEKLDLSFNKLSG-EFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFT- 275
                 RNL +L +LDLS N++       S G  +SLK ++  S   +    H +     
Sbjct: 114 LKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQG 173

Query: 276 -RLQFLFLGFNNFSGDLLGSIGN-LRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQN 333
             L F  L  N+    +    G  +     + +   + SG       N   + +     N
Sbjct: 174 KTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSG-------NGWTVDITGNFSN 226

Query: 334 SYGGTVELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLTKF 393
           +   +      L    ++       +      + TF     ++ + +    L    +   
Sbjct: 227 AISKSQAFS--LILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLD---LSHGFVFSL 281

Query: 394 -PNFLENQNHLVILNLSDNRI 413
                E    L +LNL+ N+I
Sbjct: 282 NSRVFETLKDLKVLNLAYNKI 302

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 81.4 bits (201), Expect = 1e-16
 Identities = 60/337 (17%), Positives = 108/337 (32%), Gaps = 44/337 (13%)

Query: 35  VVHCNKNTGHVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPPEI---- 90
           ++  + N   V         +  S + + SL    H+       ++    +         
Sbjct: 208 ILDVSGNGWTVDITGNFSNAI--SKSQAFSLILAHHIMGAGFGFHNI--KDPDQNTFAGL 263

Query: 91  --INLSRLELQKPSFENL----FEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRN 144
              ++  L+L      +L    FE L +LK LNL    I+         L +L  ++L  
Sbjct: 264 ARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSY 323

Query: 145 CELQAMCSFFLI-------------QISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRC 191
             L  + S                  I+     +   L KL  LDL  N L         
Sbjct: 324 NLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT-TIHFIPS 382

Query: 192 FGELPISMGNLGSLKE-------LDLSQNGFFGELPTSI-RNLFSLEKLDLSFNKLSG-E 242
             ++ +S   L +L +       + LS+N             +  L+ L L+ N+ S   
Sbjct: 383 IPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCS 442

Query: 243 FPWSTGNFSSLKLLNLRSCGFWSKVPHSI-----GNFTRLQFLFLGFNNFSGDLLGSIGN 297
              +     SL+ L L            +        + LQ L+L  N  +    G   +
Sbjct: 443 GDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSH 502

Query: 298 LRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNS 334
           L +L  + +     +    S       L +LD+++N 
Sbjct: 503 LTALRGLSLNSNRLTV--LSHNDLPANLEILDISRNQ 537

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 71.8 bits (176), Expect = 1e-13
 Identities = 41/245 (16%), Positives = 83/245 (33%), Gaps = 25/245 (10%)

Query: 47  KLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENL 106
            ++L    +  +I    +   L  L+ L+L  N   +    P   ++  + L       L
Sbjct: 342 YIDLQKNHI--AIIQDQTFKFLEKLQTLDLRDNALTTIHFIP---SIPDIFLSGNKLVTL 396

Query: 107 FEKLSNLKTLNLGDVSIDS-TIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSS 165
            +       ++L +  +++  I + +  +  L  + L      +               +
Sbjct: 397 PKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSC----------SGDQT 446

Query: 166 LGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRN 225
                 L  L L  N LQ    +  C+         L  L+ L L+ N      P    +
Sbjct: 447 PSENPSLEQLFLGENMLQLAWETELCWDVF----EGLSHLQVLYLNHNYLNSLPPGVFSH 502

Query: 226 LFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFN 285
           L +L  L L+ N+L+          ++L++L++      +  P     F  L  L +  N
Sbjct: 503 LTALRGLSLNSNRLTVLSHND--LPANLEILDISRNQLLAPNPDV---FVSLSVLDITHN 557

Query: 286 NFSGD 290
            F  +
Sbjct: 558 KFICE 562

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  102 bits (256), Expect = 5e-24
 Identities = 70/360 (19%), Positives = 132/360 (36%), Gaps = 55/360 (15%)

Query: 58  SINSSSSLFKLVHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENL--FEKLSNLKT 115
            IN   +   L       L   +   +    ++  ++ L+  +   +++   E L+NL  
Sbjct: 13  PINQIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQ 72

Query: 116 LNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHL 175
           +N  +  +    P  +KNL+ L  + + N ++                + L NL+ L  L
Sbjct: 73  INFSNNQLTDITP--LKNLTKLVDILMNNNQI-------------ADITPLANLTNLTGL 117

Query: 176 DLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLS 235
            L  N++                + NL +L  L+LS N       +++  L SL++L   
Sbjct: 118 TLFNNQITD-----------IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFG 164

Query: 236 FNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSI 295
            N+++   P    N ++L+ L++ S          +   T L+ L    N  S   +  +
Sbjct: 165 -NQVTDLKP--LANLTTLERLDISSNKV--SDISVLAKLTNLESLIATNNQISD--ITPL 217

Query: 296 GNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVL--LTSWKNLEA 353
           G L +L+ + +           +L +LT L  LD+A N      ++  L  L+    L  
Sbjct: 218 GILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANN------QISNLAPLSGLTKLTE 269

Query: 354 LDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLTKFPNFLENQNHLVILNLSDNRI 413
           L +  N+ S ++              +    L    L         +N L  L L  N I
Sbjct: 270 LKLGANQISNISPL-------AGLTALTNLELNENQLEDISPISNLKN-LTYLTLYFNNI 321

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  100 bits (250), Expect = 4e-23
 Identities = 72/369 (19%), Positives = 134/369 (36%), Gaps = 55/369 (14%)

Query: 47  KLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENL 106
           ++N S+      +   + L  L  L  + +  N          + NL+ L L      ++
Sbjct: 72  QINFSNN----QLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDI 127

Query: 107 --FEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPS 164
              + L+NL  L L   +I  +    +  L+SL  +S  N            Q++     
Sbjct: 128 DPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSFGN------------QVTD--LK 171

Query: 165 SLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIR 224
            L NL+ L  LD+S N++                +  L +L+ L  + N      P  + 
Sbjct: 172 PLANLTTLERLDISSNKVSD-----------ISVLAKLTNLESLIATNNQISDITP--LG 218

Query: 225 NLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGF 284
            L +L++L L+ N+L      +  + ++L  L+L +    S +   +   T+L  L LG 
Sbjct: 219 ILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQI-SNLA-PLSGLTKLTELKLGA 274

Query: 285 NNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVL 344
           N  S   +  +  L +L  + + +        S + NL  L  L +  N+      +  L
Sbjct: 275 NQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDISPVSSL 330

Query: 345 LTSWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLTKFPNFLENQNHLV 404
                 L+ L    N+ S       D ++      I +       ++     L N   + 
Sbjct: 331 ----TKLQRLFFYNNKVS-------DVSSLANLTNINWLSAGHNQISDLTP-LANLTRIT 378

Query: 405 ILNLSDNRI 413
            L L+D   
Sbjct: 379 QLGLNDQAW 387

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 97.0 bits (242), Expect = 4e-22
 Identities = 66/356 (18%), Positives = 124/356 (34%), Gaps = 47/356 (13%)

Query: 59  INSSSSLFKLVHLKWLNLALNDFNSSEIPPEIINLSRLELQ-KPSFENLFEKLSNLKTLN 117
           I     L  L +L  L L+ N  +       + +L +L    + +       L+ L+ L+
Sbjct: 124 ITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLD 183

Query: 118 LGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDL 177
           +    +  +    +  L++L  +   N ++  +             + LG L+ L  L L
Sbjct: 184 ISSNKV--SDISVLAKLTNLESLIATNNQISDI-------------TPLGILTNLDELSL 228

Query: 178 SLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFN 237
           + N+L+              ++ +L +L +LDL+ N      P  +  L  L +L L  N
Sbjct: 229 NGNQLKD-----------IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGAN 275

Query: 238 KLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGN 297
           ++S   P +    ++L  L L       +    I N   L +L L FNN S   +  + +
Sbjct: 276 QISNISPLA--GLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD--ISPVSS 329

Query: 298 LRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDIS 357
           L  L+ ++      S    SSL NLT +  L    N       L  L      +  L ++
Sbjct: 330 LTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTPLANL----TRITQLGLN 383

Query: 358 LNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLTKFPNFLENQNHLVILNLSDNRI 413
               +              +  I             P  + +       +++ N  
Sbjct: 384 DQAWTNAPVNYK------ANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLP 433

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 95.8 bits (239), Expect = 1e-21
 Identities = 80/357 (22%), Positives = 135/357 (37%), Gaps = 52/357 (14%)

Query: 59  INSSSSLFKLVHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENL--FEKLSNLKTL 116
           I   + L  L +L  L L  N     +    + NL+RLEL   +  ++     L++L+ L
Sbjct: 102 IADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQL 161

Query: 117 NLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLD 176
           + G+   D      + NL++L  + + + ++                S L  L+ L  L 
Sbjct: 162 SFGNQVTDLK---PLANLTTLERLDISSNKV-------------SDISVLAKLTNLESLI 205

Query: 177 LSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSF 236
            + N++                +G L +L EL L+ N    +   ++ +L +L  LDL+ 
Sbjct: 206 ATNNQISD-----------ITPLGILTNLDELSLNGNQL--KDIGTLASLTNLTDLDLAN 252

Query: 237 NKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIG 296
           N++S   P S    + L  L L +    S +   +   T L  L L  N      +  I 
Sbjct: 253 NQISNLAPLS--GLTKLTELKLGANQI-SNIS-PLAGLTALTNLELNENQLED--ISPIS 306

Query: 297 NLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDI 356
           NL++L  + +   N S    S + +LT+L  L    N       L  L     N+  L  
Sbjct: 307 NLKNLTYLTLYFNNISD--ISPVSSLTKLQRLFFYNNKVSDVSSLANL----TNINWLSA 360

Query: 357 SLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLTKFPNFLENQNHLVILNLSDNRI 413
             N+ S       D T      +I   GL     T  P  +  + ++ I N   N  
Sbjct: 361 GHNQIS-------DLTPLANLTRITQLGLNDQAWTNAP--VNYKANVSIPNTVKNVT 408

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 73.5 bits (181), Expect = 2e-14
 Identities = 52/264 (19%), Positives = 91/264 (34%), Gaps = 33/264 (12%)

Query: 58  SINSSSSLFKLVHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENL--FEKLSNLKT 115
            +    +L  L +L  L+LA N  ++      +  L+ L+L      N+     L+ L  
Sbjct: 232 QLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTN 291

Query: 116 LNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHL 175
           L L +  ++   P  I NL +LT+++L               IS   P  + +L+KL  L
Sbjct: 292 LELNENQLEDISP--ISNLKNLTYLTLYFN-----------NISDISP--VSSLTKLQRL 336

Query: 176 DLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLS 235
               N++               S+ NL ++  L    N       T + NL  + +L L+
Sbjct: 337 FFYNNKVSD-----------VSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLN 383

Query: 236 FNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSI 295
               +        N S    +   +    +  P +I +        + +N  S       
Sbjct: 384 DQAWTNAPVNYKANVSIPNTVKNVTGALIA--PATISDGGSYTEPDITWNLPS-YTNEVS 440

Query: 296 GNLRSLEVIYIAKCNFSGQITSSL 319
                   I      FSG +T  L
Sbjct: 441 YTFSQPVTIGKGTTTFSGTVTQPL 464

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 99.8 bits (249), Expect = 8e-23
 Identities = 81/415 (19%), Positives = 138/415 (33%), Gaps = 60/415 (14%)

Query: 47  KLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNS----------------------- 83
           +LN++H  +  S         L +L+ L+L+ N   S                       
Sbjct: 128 ELNVAHNLI-QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186

Query: 84  ---SEIPPEI--------INLSRLELQKPSFENLFEKLSNLKTLNLGDVSIDSTIPHNIK 132
              + I P          + L          +   + L+ L+   L      +    N++
Sbjct: 187 NPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE--GNLE 244

Query: 133 NLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQG-EAASFRC 191
                    L N  ++     +L      I      L+ +    L    ++  +  S+  
Sbjct: 245 KFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF 304

Query: 192 FGEL---------PISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLS-- 240
             +                L SLK L  + N   G   + + +L SLE LDLS N LS  
Sbjct: 305 GWQHLELVNCKFGQFPTLKLKSLKRLTFTSN-KGGNAFSEV-DLPSLEFLDLSRNGLSFK 362

Query: 241 GEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSG-DLLGSIGNLR 299
           G    S    +SLK L+L   G    +  +     +L+ L    +N           +LR
Sbjct: 363 GCCSQSDFGTTSLKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 421

Query: 300 SLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLN 359
           +L  + I+  +           L+ L VL MA NS+      D+  T  +NL  LD+S  
Sbjct: 422 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI-FTELRNLTFLDLSQC 480

Query: 360 RSSVLTKATFDATTDTTSQKIQYRGLRSCNLTKFP-NFLENQNHLVILNLSDNRI 413
           +   L+   F++ +      +Q   + S  L   P    +    L  + L  N  
Sbjct: 481 QLEQLSPTAFNSLS-----SLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 90.5 bits (225), Expect = 7e-20
 Identities = 70/387 (18%), Positives = 129/387 (33%), Gaps = 56/387 (14%)

Query: 61  SSSSLFKLVHLKWLNLALNDFNSSEIPPEII----NLSRLELQKPSFENL----FEKLSN 112
            S S F    L+ L+L+  +     I         +LS L L     ++L    F  LS+
Sbjct: 44  GSYSFFSFPELQVLDLSRCEI--QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 101

Query: 113 LKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKL 172
           L+ L   + ++ S     I +L +L  +++ +  +Q          S ++P    NL+ L
Sbjct: 102 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ----------SFKLPEYFSNLTNL 151

Query: 173 LHLDLSLNELQG-EAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEK 231
            HLDLS N++Q       R   ++P+          LDLS N     +         L K
Sbjct: 152 EHLDLSSNKIQSIYCTDLRVLHQMPLL------NLSLDLSLN-PMNFIQPGAFKEIRLHK 204

Query: 232 LDLSFNKLSGEFPWST-GNFSSLKLLNLRSCGFWSK---VPHSIGNFTRLQFLFL----- 282
           L L  N  S     +     + L++  L    F ++             L  L +     
Sbjct: 205 LTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 264

Query: 283 -GFNNFSGDLLGSIGNLRSLEVIYIAKCNFSG-QITSSLRNLTQLVVLDMAQNS--YGGT 338
              + +  D++     L ++    +        +  S       L +++           
Sbjct: 265 AYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKL 324

Query: 339 VELDVL------------LTSWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLR 386
             L  L                 +LE LD+S N    L+     + +D  +  ++Y  L 
Sbjct: 325 KSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNG---LSFKGCCSQSDFGTTSLKYLDLS 381

Query: 387 SCNLTKFPNFLENQNHLVILNLSDNRI 413
              +    +       L  L+   + +
Sbjct: 382 FNGVITMSSNFLGLEQLEHLDFQHSNL 408

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 86.7 bits (215), Expect = 2e-18
 Identities = 50/246 (20%), Positives = 87/246 (35%), Gaps = 43/246 (17%)

Query: 47  KLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENL 106
           +L  +         ++ S   L  L++L+L+ N  +                        
Sbjct: 329 RLTFTSN----KGGNAFSEVDLPSLEFLDLSRNGLSFKGCCS----------------QS 368

Query: 107 FEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSL 166
               ++LK L+L    +  T+  N   L  L  +  ++  L+ M             S  
Sbjct: 369 DFGTTSLKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQHSNLKQMSE----------FSVF 417

Query: 167 GNLSKLLHLDLSLNELQGEAASFRCFGELPISM-GNLGSLKELDLSQNGFFGELPTSI-R 224
            +L  L++LD+S    +               +   L SL+ L ++ N F       I  
Sbjct: 418 LSLRNLIYLDISHTHTR----------VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT 467

Query: 225 NLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGF 284
            L +L  LDLS  +L    P +  + SSL++LN+ S    S         T LQ ++L  
Sbjct: 468 ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHT 527

Query: 285 NNFSGD 290
           N +   
Sbjct: 528 NPWDCS 533

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 84.0 bits (208), Expect = 1e-17
 Identities = 52/313 (16%), Positives = 106/313 (33%), Gaps = 31/313 (9%)

Query: 111 SNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLS 170
            + K L+L    +     ++  +   L  + L  C           +I      +  +LS
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-----------EIQTIEDGAYQSLS 76

Query: 171 KLLHLDLSLNELQG-EAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSL 229
            L  L L+ N +Q     +F            L SL++L   +          I +L +L
Sbjct: 77  HLSTLILTGNPIQSLALGAFS----------GLSSLQKLVAVETNLASLENFPIGHLKTL 126

Query: 230 EKLDLSFNKL-SGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFN--- 285
           ++L+++ N + S + P    N ++L+ L+L S    S     +    ++  L L  +   
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186

Query: 286 NFSGDLLGSIGNLRSLEVIYIAKCNFSGQITS-SLRNLTQLVVLDMAQNSYGGTVELDVL 344
           N    +         L  + +     S  +    ++ L  L V  +    +     L+  
Sbjct: 187 NPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKF 246

Query: 345 -LTSWKNLEALDISLNRSSVLTKATFDAT-TDTTSQKIQYRGLRSCNLTKFPN--FLENQ 400
             ++ + L  L I   R + L     D          +    L S  + +  +  +    
Sbjct: 247 DKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGW 306

Query: 401 NHLVILNLSDNRI 413
            HL ++N    + 
Sbjct: 307 QHLELVNCKFGQF 319

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 77.4 bits (191), Expect = 1e-15
 Identities = 44/205 (21%), Positives = 80/205 (39%), Gaps = 5/205 (2%)

Query: 209 DLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVP 268
              +  F+ ++P ++    S + LDLSFN L     +S  +F  L++L+L  C   +   
Sbjct: 13  QCMELNFY-KIPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED 69

Query: 269 HSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVL 328
            +  + + L  L L  N      LG+   L SL+ +   + N +      + +L  L  L
Sbjct: 70  GAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL 129

Query: 329 DMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSC 388
           ++A N    + +L    ++  NLE LD+S N+   +               +    L   
Sbjct: 130 NVAHNLI-QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD-LSLN 187

Query: 389 NLTKFPNFLENQNHLVILNLSDNRI 413
            +         +  L  L L +N  
Sbjct: 188 PMNFIQPGAFKEIRLHKLTLRNNFD 212

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 97.3 bits (242), Expect = 6e-22
 Identities = 49/272 (18%), Positives = 86/272 (31%), Gaps = 50/272 (18%)

Query: 64  SLFKLVHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENLFEKLSNLKTLNLGDVSI 123
               L+ L   +  L       +P     L +L +      +L      L+ L++ D  +
Sbjct: 99  LPPGLLELSIFSNPLT-----HLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQL 153

Query: 124 DSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQ 183
            +++P     L  L      N +L +            +P     L     L +S N+L 
Sbjct: 154 -ASLPALPSELCKLW---AYNNQLTS------------LPMLPSGLQ---ELSVSDNQLA 194

Query: 184 GEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEF 243
                      LP        L +L    N     LP        L++L +S N+L+   
Sbjct: 195 ----------SLPTLPSE---LYKLWAYNNR-LTSLPALPSG---LKELIVSGNRLT-SL 236

Query: 244 PWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEV 303
           P        LK L +      + +P        L  L +  N  +  L  S+ +L S   
Sbjct: 237 PVLPSE---LKELMVSGNRL-TSLPMLPSG---LLSLSVYRNQLT-RLPESLIHLSSETT 288

Query: 304 IYIAKCNFSGQITSSLRNLTQLVVLDMAQNSY 335
           + +     S +   +LR +T           +
Sbjct: 289 VNLEGNPLSERTLQALREITSAPGYSGPIIRF 320

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 92.3 bits (229), Expect = 2e-20
 Identities = 57/323 (17%), Positives = 102/323 (31%), Gaps = 68/323 (21%)

Query: 92  NLSRLELQKPSFENLFEKL-SNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAM 150
             + L + +     L + L +++ TL + D ++ S +P     L +L    +   +L   
Sbjct: 41  GNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTS-LPALPPELRTLE---VSGNQLT-- 94

Query: 151 CSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDL 210
                      +P     L +L      L  L                      L +L +
Sbjct: 95  ----------SLPVLPPGLLELSIFSNPLTHLPAL----------------PSGLCKLWI 128

Query: 211 SQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHS 270
             N     LP     L   ++L +S N+L+   P        L   N +     + +P  
Sbjct: 129 FGNQL-TSLPVLPPGL---QELSVSDNQLA-SLPALPSELCKLWAYNNQL----TSLPML 179

Query: 271 IGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDM 330
                 LQ L +  N  +  L      L  L         ++ ++TS     + L  L +
Sbjct: 180 PSG---LQELSVSDNQLA-SLPTLPSELYKLWA-------YNNRLTSLPALPSGLKELIV 228

Query: 331 AQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNL 390
           + N       L  L      L+ L +S NR + L               +    +    L
Sbjct: 229 SGN------RLTSLPVLPSELKELMVSGNRLTSL---------PMLPSGLLSLSVYRNQL 273

Query: 391 TKFPNFLENQNHLVILNLSDNRI 413
           T+ P  L + +    +NL  N +
Sbjct: 274 TRLPESLIHLSSETTVNLEGNPL 296

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 86.5 bits (214), Expect = 2e-18
 Identities = 58/321 (18%), Positives = 100/321 (31%), Gaps = 41/321 (12%)

Query: 68  LVHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENLFEKLSNLKTLNLGDVSIDSTI 127
              L+ L+++ N   S  +P     L +L        +L    S L+ L++ D  + +++
Sbjct: 140 PPGLQELSVSDNQLAS--LPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQL-ASL 196

Query: 128 PHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAA 187
           P     L  L      N  L +            +P+    L     L +S N L     
Sbjct: 197 PTLPSELYKLW---AYNNRLTS------------LPALPSGLK---ELIVSGNRLT---- 234

Query: 188 SFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWST 247
                  LP+       LKEL +S N     LP        L  L +  N+L+   P S 
Sbjct: 235 ------SLPVLPSE---LKELMVSGN-RLTSLPMLPSG---LLSLSVYRNQLT-RLPESL 280

Query: 248 GNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIA 307
            + SS   +NL       +   ++   T           F      +    R+L +   A
Sbjct: 281 IHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHL--AA 338

Query: 308 KCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTKA 367
                           +  +     N+   ++ LD L  +   ++        SS L + 
Sbjct: 339 ADWLVPAREGEPAPADRWHMFGQEDNADAFSLFLDRLSETENFIKDAGFKAQISSWLAQL 398

Query: 368 TFDATTDTTSQKIQYRGLRSC 388
             D      +  +      SC
Sbjct: 399 AEDEALRANTFAMATEATSSC 419

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 74.2 bits (182), Expect = 2e-14
 Identities = 42/245 (17%), Positives = 75/245 (30%), Gaps = 50/245 (20%)

Query: 169 LSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFS 228
            +    L++  + L            LP  +     +  L +  N     LP        
Sbjct: 39  NNGNAVLNVGESGLT----------TLPDCLPA--HITTLVIPDNN-LTSLPALPPE--- 82

Query: 229 LEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFS 288
           L  L++S N+L+   P        L + +       + +P        L  L++  N  +
Sbjct: 83  LRTLEVSGNQLT-SLPVLPPGLLELSIFSNP----LTHLPALPSG---LCKLWIFGNQLT 134

Query: 289 GDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSW 348
             L      L+ L V      N    + +    L +L   +          +L  L    
Sbjct: 135 -SLPVLPPGLQELSVSD----NQLASLPALPSELCKLWAYNN---------QLTSLPMLP 180

Query: 349 KNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLTKFPNFLENQNHLVILNL 408
             L+ L +S N+ + L          T   ++      +  LT  P        L  L +
Sbjct: 181 SGLQELSVSDNQLASL---------PTLPSELYKLWAYNNRLTSLPALPSG---LKELIV 228

Query: 409 SDNRI 413
           S NR+
Sbjct: 229 SGNRL 233

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 95.7 bits (238), Expect = 1e-21
 Identities = 45/362 (12%), Positives = 93/362 (25%), Gaps = 48/362 (13%)

Query: 84  SEIPPEIINLSRLELQKPSFENL----FEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTF 139
            EI          ++   S +       +   N+K L+L    +      ++   + L  
Sbjct: 3   HEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLEL 62

Query: 140 VSLRNCELQAMCSFFLIQ------ISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFG 193
           ++L +  L        +       ++      L     +  L  + N +           
Sbjct: 63  LNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISR--------- 113

Query: 194 ELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSG-EFPWSTGNFSS 252
              +S       K + L+ N               ++ LDL  N++    F     +  +
Sbjct: 114 ---VSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170

Query: 253 LKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFS 312
           L+ LNL+       V   +  F +L+ L L  N  +  +     +   +  I +      
Sbjct: 171 LEHLNLQYNFI-YDVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV 227

Query: 313 GQITSSLRNLTQLVVLDMAQNSYGGTVELDVLL---------------------TSWKNL 351
             I  +LR    L   D+  N +      D                              
Sbjct: 228 -LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVP 286

Query: 352 EALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLTKFPNFLENQNHLVILNLSDN 411
                       L     D       ++      +     +     ENQ     ++    
Sbjct: 287 TLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKE 346

Query: 412 RI 413
           + 
Sbjct: 347 QY 348

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 88.8 bits (220), Expect = 2e-19
 Identities = 47/315 (14%), Positives = 93/315 (29%), Gaps = 69/315 (21%)

Query: 102 SFENLFEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGR 161
           +   + +  +  K   + D S+   +    ++  ++  + L               +S  
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGN-----------PLSQI 49

Query: 162 IPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPT 221
             + L   +KL  L+LS N L              + + +L +L+ LDL+ N        
Sbjct: 50  SAADLAPFTKLELLNLSSNVLYE-----------TLDLESLSTLRTLDLNNNYV-----Q 93

Query: 222 SIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLF 281
            +    S+E L  + N +S     S       K + L +           G  +R+Q+L 
Sbjct: 94  ELLVGPSIETLHAANNNISR---VSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLD 150

Query: 282 LGFNNFSG-DLLGSIGNLRSLEVIYIAKCNFSGQITS--SLRNLTQLVVLDMAQNSYGGT 338
           L  N     +      +  +LE + +        I          +L  LD++ N     
Sbjct: 151 LKLNEIDTVNFAELAASSDTLEHLNLQYN----FIYDVKGQVVFAKLKTLDLSSNK---L 203

Query: 339 VELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLTKFPNFLE 398
             +     S   +  + +  N+                             L      L 
Sbjct: 204 AFMGPEFQSAAGVTWISLRNNK-----------------------------LVLIEKALR 234

Query: 399 NQNHLVILNLSDNRI 413
              +L   +L  N  
Sbjct: 235 FSQNLEHFDLRGNGF 249

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 85.7 bits (212), Expect = 3e-18
 Identities = 62/387 (16%), Positives = 120/387 (31%), Gaps = 50/387 (12%)

Query: 48  LNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPPEII----NLSRLELQKPSF 103
             ++   L      +S      ++K L+L+ N    S+I    +     L  L L     
Sbjct: 15  EKVTDSSL--KQALASLRQSAWNVKELDLSGNPL--SQISAADLAPFTKLELLNLSSNVL 70

Query: 104 ENL--FEKLSNLKTLNLGDVSIDSTIPH------------NIKNLSSLTFVSLRNCELQA 149
                 E LS L+TL+L +  +   +              NI  +S       +N  L  
Sbjct: 71  YETLDLESLSTLRTLDLNNNYV-QELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLAN 129

Query: 150 MCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELD 209
                  +I+       G  S++ +LDL LNE+                  +  +L+ L+
Sbjct: 130 N------KITMLRDLDEGCRSRVQYLDLKLNEIDTV--------NFAELAASSDTLEHLN 175

Query: 210 LSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPH 269
           L  N F  ++   +     L+ LDLS NKL+        + + +  ++LR+      +  
Sbjct: 176 LQYN-FIYDVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKL-VLIEK 231

Query: 270 SIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLD 329
           ++     L+   L  N F    L      ++  V  +AK         +    T   +  
Sbjct: 232 ALRFSQNLEHFDLRGNGFHCGTLRDF-FSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGH 290

Query: 330 MAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCN 389
                       D+       L AL    +       +  +        + + R + +  
Sbjct: 291 YGAYCCE-----DLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALK 345

Query: 390 --LTKFPN-FLENQNHLVILNLSDNRI 413
                  +     +   + L      +
Sbjct: 346 EQYRTVIDQVTLRKQAKITLEQKKKAL 372

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 54.5 bits (131), Expect = 3e-08
 Identities = 26/217 (11%), Positives = 55/217 (25%), Gaps = 19/217 (8%)

Query: 58  SINSSSSLFKLVHLKWLNLALNDFNSSEIPPEIINLSRLEL------QKPSFENLFEKLS 111
            I           LK L+L+ N    + + PE  + + +        +    E       
Sbjct: 180 FIYDVKGQVVFAKLKTLDLSSNKL--AFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQ 237

Query: 112 NLKTLNLGDVSIDSTIPH-------NIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPS 164
           NL+  +L                   ++ ++  T   L     +      L         
Sbjct: 238 NLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCE 297

Query: 165 SLGN--LSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTS 222
            L      +L+ L    + L   +        L     N    +E+D  +  +   +   
Sbjct: 298 DLPAPFADRLIALKRKEHALL--SGQGSETERLECERENQARQREIDALKEQYRTVIDQV 355

Query: 223 IRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLR 259
                +   L+     L  +        + L     +
Sbjct: 356 TLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQ 392

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 92.7 bits (231), Expect = 3e-21
 Identities = 48/315 (15%), Positives = 93/315 (29%), Gaps = 69/315 (21%)

Query: 102 SFENLFEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGR 161
           +   + +  +  K   + D S+   +    ++  ++  + L               +S  
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGN-----------PLSQI 49

Query: 162 IPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPT 221
             + L   +KL  L+LS N L           E    + +L +L+ LDL+ N        
Sbjct: 50  SAADLAPFTKLELLNLSSNVLY----------ETL-DLESLSTLRTLDLNNNYV-----Q 93

Query: 222 SIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLF 281
            +    S+E L  + N +S     S       K + L +           G  +R+Q+L 
Sbjct: 94  ELLVGPSIETLHAANNNISR---VSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLD 150

Query: 282 LGFNNFSG-DLLGSIGNLRSLEVIYIAKCNFSGQITS--SLRNLTQLVVLDMAQNSYGGT 338
           L  N     +      +  +LE + +        I          +L  LD++ N     
Sbjct: 151 LKLNEIDTVNFAELAASSDTLEHLNLQYN----FIYDVKGQVVFAKLKTLDLSSNKL--- 203

Query: 339 VELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLTKFPNFLE 398
             +     S   +  + +  N+                             L      L 
Sbjct: 204 AFMGPEFQSAAGVTWISLRNNK-----------------------------LVLIEKALR 234

Query: 399 NQNHLVILNLSDNRI 413
              +L   +L  N  
Sbjct: 235 FSQNLEHFDLRGNGF 249

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 88.5 bits (220), Expect = 7e-20
 Identities = 47/316 (14%), Positives = 96/316 (30%), Gaps = 56/316 (17%)

Query: 47  KLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENL 106
              ++   L      +S      ++K L+L+ N    S+I                    
Sbjct: 14  IEKVTDSSL--KQALASLRQSAWNVKELDLSGNPL--SQISAA----------------D 53

Query: 107 FEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSL 166
               + L+ LNL    +      ++++LS+L  + L N  +                  L
Sbjct: 54  LAPFTKLELLNLSSNVL--YETLDLESLSTLRTLDLNNNYV----------------QEL 95

Query: 167 GNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNL 226
                +  L  + N +              +S       K + L+ N             
Sbjct: 96  LVGPSIETLHAANNNISR------------VSCSRGQGKKNIYLANNKITMLRDLDEGCR 143

Query: 227 FSLEKLDLSFNKLSG-EFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFN 285
             ++ LDL  N++    F     +  +L+ LNL+       V   +  F +L+ L L  N
Sbjct: 144 SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI-YDVKGQV-VFAKLKTLDLSSN 201

Query: 286 NFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLL 345
             +  +     +   +  I +        I  +LR    L   D+  N +     L    
Sbjct: 202 KLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGF-HCGTLRDFF 258

Query: 346 TSWKNLEALDISLNRS 361
           +  + ++ +     + 
Sbjct: 259 SKNQRVQTVAKQTVKK 274

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 94.0 bits (234), Expect = 5e-21
 Identities = 66/342 (19%), Positives = 123/342 (35%), Gaps = 45/342 (13%)

Query: 84  SEIPPEI-INLSRLELQKPSFENL----FEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLT 138
             +P  I      L+L K   + L    F    +L+ L L +  + +  P    NL +L 
Sbjct: 24  VAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLR 83

Query: 139 FVSLRNCELQAMCSFFLIQISGRIPS-SLGNLSKLLHLDLSLNELQG-EAASFRCFGELP 196
            + LR+  L+             IP      LS L  LD+S N++       F+      
Sbjct: 84  TLGLRSNRLKL------------IPLGVFTGLSNLTKLDISENKIVILLDYMFQ------ 125

Query: 197 ISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLL 256
               +L +LK L++  N        +   L SLE+L L    L+     +  +   L +L
Sbjct: 126 ----DLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVL 181

Query: 257 NLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQIT 316
            LR     +   +S     RL+ L +    +   +  +     +L  + I  CN +    
Sbjct: 182 RLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPY 241

Query: 317 SSLRNLTQLVVLDMAQNSYGGTVELDVL----LTSWKNLEALDISLNRSSVLTKATFDAT 372
            ++R+L  L  L+++ N       +  +    L     L+ + +   + +V+    F   
Sbjct: 242 LAVRHLVYLRFLNLSYN------PISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGL 295

Query: 373 TDTTSQKIQYRGLRSCNLTKFP-NFLENQNHLVILNLSDNRI 413
                  ++   +    LT    +   +  +L  L L  N +
Sbjct: 296 N-----YLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 85.9 bits (213), Expect = 2e-18
 Identities = 60/297 (20%), Positives = 110/297 (37%), Gaps = 38/297 (12%)

Query: 48  LNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPPEI----INLSRLELQKPSF 103
           L L+   +  ++    +   L +L+ L L  N      IP  +     NL++L++ +   
Sbjct: 61  LELNE-NIVSAV-EPGAFNNLFNLRTLGLRSNRL--KLIPLGVFTGLSNLTKLDISENKI 116

Query: 104 ENL----FEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQIS 159
             L    F+ L NLK+L +GD  +          L+SL  ++L  C L            
Sbjct: 117 VILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT----------- 165

Query: 160 GRIPS-SLGNLSKLLHLDLSLNELQG-EAASFRCFGELPISMGNLGSLKELDLSQNGFFG 217
             IP+ +L +L  L+ L L    +      SF+           L  LK L++S   +  
Sbjct: 166 -SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKR----------LYRLKVLEISHWPYLD 214

Query: 218 ELPTSIRNLFSLEKLDLSFNKLSGEFPWST-GNFSSLKLLNLRSCGFWSKVPHSIGNFTR 276
            +  +     +L  L ++   L+   P+    +   L+ LNL      +     +    R
Sbjct: 215 TMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLR 273

Query: 277 LQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQN 333
           LQ + L     +     +   L  L V+ ++    +    S   ++  L  L +  N
Sbjct: 274 LQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSN 330

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 58.6 bits (142), Expect = 2e-09
 Identities = 43/197 (21%), Positives = 74/197 (37%), Gaps = 38/197 (19%)

Query: 68  LVHLKWLNLALNDFNSSEIPPEII----NLSRLELQKPSFENL----FEKLSNLKTLNLG 119
           L  L+ L L   +   + IP E +     L  L L+  +   +    F++L  LK L + 
Sbjct: 151 LNSLEQLTLEKCNL--TSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEIS 208

Query: 120 DVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPS-SLGNLSKLLHLDLS 178
                 T+  N     +LT +S+ +C L              +P  ++ +L  L  L+LS
Sbjct: 209 HWPYLDTMTPNCLYGLNLTSLSITHCNLT------------AVPYLAVRHLVYLRFLNLS 256

Query: 179 LNELQG-EAASFRCFGEL--------------PISMGNLGSLKELDLSQNGFFGELPTSI 223
            N +   E +       L              P +   L  L+ L++S N       +  
Sbjct: 257 YNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVF 316

Query: 224 RNLFSLEKLDLSFNKLS 240
            ++ +LE L L  N L+
Sbjct: 317 HSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 56.6 bits (137), Expect = 6e-09
 Identities = 36/213 (16%), Positives = 67/213 (31%), Gaps = 13/213 (6%)

Query: 203 GSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCG 262
              + +   +  F   +P  I        LDL  N++         +F  L+ L L    
Sbjct: 11  AQDRAVLCHRKRFV-AVPEGIPT--ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENI 67

Query: 263 FWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNL 322
             +  P +  N   L+ L L  N      LG    L +L  + I++      +    ++L
Sbjct: 68  VSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDL 127

Query: 323 TQLVVLDMAQNSYGGTVELDV-LLTSWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQ 381
             L  L++  N     V +     +   +LE L +     + +               + 
Sbjct: 128 YNLKSLEVGDND---LVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLH-----GLI 179

Query: 382 YRGLRSCNLTKFP-NFLENQNHLVILNLSDNRI 413
              LR  N+        +    L +L +S    
Sbjct: 180 VLRLRHLNINAIRDYSFKRLYRLKVLEISHWPY 212

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 22/144 (15%), Positives = 51/144 (35%), Gaps = 23/144 (15%)

Query: 48  LNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPPEII----NLSRLELQKPSF 103
           L +SH     ++  + +    ++L  L++   +   + +P   +     L  L L     
Sbjct: 205 LEISHWPYLDTM--TPNCLYGLNLTSLSITHCNL--TAVPYLAVRHLVYLRFLNLSYNPI 260

Query: 104 ENL----FEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQIS 159
             +      +L  L+ + L    +    P+  + L+ L  +++   +L        ++  
Sbjct: 261 STIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTT------LE-- 312

Query: 160 GRIPSSLGNLSKLLHLDLSLNELQ 183
               S   ++  L  L L  N L 
Sbjct: 313 ---ESVFHSVGNLETLILDSNPLA 333

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 92.9 bits (231), Expect = 1e-20
 Identities = 66/404 (16%), Positives = 127/404 (31%), Gaps = 58/404 (14%)

Query: 47  KLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPPEII----NLSRLELQKPS 102
            L + +   F  I        L  L  L +            + +    ++  L L    
Sbjct: 127 TLRIGNVETFSEI-RRIDFAGLTSLNELEIKALSL--RNYQSQSLKSIRDIHHLTLHLSE 183

Query: 103 FENL----FEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQI 158
              L     + LS+++ L L D ++       +      + +         +      ++
Sbjct: 184 SAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNEL 243

Query: 159 SGRIPSSLGNLSKLLHLDLSLNELQ----GEAASFRCFGEL------------------- 195
             ++   +  LS++   D +LN L      E+      G++                   
Sbjct: 244 L-KLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDL 302

Query: 196 PISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWST---GNFSS 252
                 L  +K + +  +  F    +  ++L SLE LDLS N +  E+  ++   G + S
Sbjct: 303 STVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPS 362

Query: 253 LKLLNLRSCGFWS--KVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCN 310
           L+ L L      S  K    +     L  L +  N F   +  S      +  + ++   
Sbjct: 363 LQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTG 421

Query: 311 FSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTKATFD 370
               + + +     L VLD++ N+      LD        L+ L IS N+   L  A+  
Sbjct: 422 IR-VVKTCI--PQTLEVLDVSNNN------LDSFSLFLPRLQELYISRNKLKTLPDASL- 471

Query: 371 ATTDTTSQKIQYRGLRSCNLTKFP-NFLENQNHLVILNLSDNRI 413
                    +    +    L   P    +    L  + L  N  
Sbjct: 472 ------FPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 77.8 bits (192), Expect = 1e-15
 Identities = 62/353 (17%), Positives = 112/353 (31%), Gaps = 42/353 (11%)

Query: 70  HLKWLNLALNDFNSSEIPPEII----NLSRLELQKPSFENL----FEKLSNLKTLNLGDV 121
            +K L+L+ N    + I    +    NL  L L+      +    F  L +L+ L+L D 
Sbjct: 27  AMKSLDLSFNKI--TYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN 84

Query: 122 SIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNE 181
            + S        LSSL +++L     Q +           + S   NL+ L  L +   E
Sbjct: 85  HLSSLSSSWFGPLSSLKYLNLMGNPYQTL----------GVTSLFPNLTNLQTLRIGNVE 134

Query: 182 LQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSG 241
              E           I    L SL EL++           S++++  +  L L  ++ + 
Sbjct: 135 TFSEIR--------RIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAF 186

Query: 242 EFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSL 301
                    SS++ L LR           +        +       S     S   L  L
Sbjct: 187 LLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKL 246

Query: 302 EVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRS 361
               +              + T   + D   +      EL  + T    +  L I     
Sbjct: 247 LRYILELSEV------EFDDCTLNGLGDFNPSESDVVSELGKVETV--TIRRLHIPQFYL 298

Query: 362 SVLTKATFDATTDTTSQKIQYRGLRSCNLTKFP-NFLENQNHLVILNLSDNRI 413
                  +         K++   + +  +   P +F ++   L  L+LS+N +
Sbjct: 299 FYDLSTVYSLLE-----KVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLM 346

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 90.5 bits (225), Expect = 4e-20
 Identities = 65/376 (17%), Positives = 127/376 (33%), Gaps = 58/376 (15%)

Query: 48  LNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPPEII----NLSRLELQKPSF 103
            ++        +        L + K +    +     ++P  ++     +  L L     
Sbjct: 24  YDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTM--RKLPAALLDSFRQVELLNLNDLQI 81

Query: 104 ENL----FEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQIS 159
           E +    F     ++ L +G  +I    PH  +N+  LT + L   +L            
Sbjct: 82  EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS----------- 130

Query: 160 GRIPSSL-GNLSKLLHLDLSLNELQG-EAASFRCFGELPISMGNLGSLKELDLSQNGFFG 217
             +P  +  N  KL  L +S N L+  E  +F+             SL+ L LS N    
Sbjct: 131 -SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQ----------ATTSLQNLQLSSNR-LT 178

Query: 218 ELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRL 277
            +   +  + SL   ++S+N LS     +     +++ L+       + V   +     L
Sbjct: 179 HVD--LSLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSI-NVVRGPV--NVEL 228

Query: 278 QFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGG 337
             L L  NN +      + N   L  + ++       +      + +L  L ++ N    
Sbjct: 229 TILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR--- 283

Query: 338 TVELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLTKFPNFL 397
            V L++       L+ LD+S N    + +            +++   L   ++      L
Sbjct: 284 LVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFD------RLENLYLDHNSIVTLK--L 335

Query: 398 ENQNHLVILNLSDNRI 413
              + L  L LS N  
Sbjct: 336 STHHTLKNLTLSHNDW 351

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 73.2 bits (180), Expect = 2e-14
 Identities = 49/329 (14%), Positives = 117/329 (35%), Gaps = 50/329 (15%)

Query: 102 SFENLFEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGR 161
             ++  +       +++   + D         L++   V+ +N  ++            +
Sbjct: 12  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR------------K 59

Query: 162 IPSS-LGNLSKLLHLDLSLNELQG-EAASFRCFGEL--------------PISMGNLGSL 205
           +P++ L +  ++  L+L+  +++  +  +F     +              P    N+  L
Sbjct: 60  LPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 119

Query: 206 KELDLSQNGFFGELPTSI-RNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFW 264
             L L +N     LP  I  N   L  L +S N L      +    +SL+ L L S    
Sbjct: 120 TVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL- 177

Query: 265 SKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQ 324
           + V   +     L    + +N      L ++    ++E +  +  + +  +   +    +
Sbjct: 178 THVD--LSLIPSLFHANVSYNL-----LSTLAIPIAVEELDASHNSIN-VVRGPV--NVE 227

Query: 325 LVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRG 384
           L +L +  N+     +    L ++  L  +D+S N    +    F         +++   
Sbjct: 228 LTILKLQHNNL---TDTAW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQ-----RLERLY 278

Query: 385 LRSCNLTKFPNFLENQNHLVILNLSDNRI 413
           + +  L     + +    L +L+LS N +
Sbjct: 279 ISNNRLVALNLYGQPIPTLKVLDLSHNHL 307

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 63.9 bits (156), Expect = 2e-11
 Identities = 36/197 (18%), Positives = 67/197 (34%), Gaps = 37/197 (18%)

Query: 47  KLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPPEI-INLSRLELQKPSFEN 105
             N+S+       N  S+L   + ++ L+ + N    + +   + + L+ L+LQ  +  +
Sbjct: 190 HANVSY-------NLLSTLAIPIAVEELDASHNSI--NVVRGPVNVELTILKLQHNNLTD 240

Query: 106 L--FEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIP 163
                    L  ++L    ++  + H    +  L  + + N  L A            + 
Sbjct: 241 TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA------------LN 288

Query: 164 SSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSI 223
                +  L  LDLS N L            +  +      L+ L L  N     L  S 
Sbjct: 289 LYGQPIPTLKVLDLSHNHLL----------HVERNQPQFDRLENLYLDHN-SIVTLKLS- 336

Query: 224 RNLFSLEKLDLSFNKLS 240
               +L+ L LS N   
Sbjct: 337 -THHTLKNLTLSHNDWD 352

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 90.8 bits (226), Expect = 4e-20
 Identities = 65/344 (18%), Positives = 111/344 (32%), Gaps = 66/344 (19%)

Query: 70  HLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENLFEKLSNLKTLNLGDVSIDSTIPH 129
               L L       S +P    +L  L     S   L E   +LK+L + + ++   +  
Sbjct: 72  QAHELELNNLGL--SSLPELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNL-KALSD 128

Query: 130 NIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASF 189
               L  L    + N +L+            ++P  L N S L  +D+  N L+      
Sbjct: 129 LPPLLEYL---GVSNNQLE------------KLP-ELQNSSFLKIIDVDNNSLK------ 166

Query: 190 RCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGN 249
               +LP       SL+ +    N    ELP  ++NL  L  +    N L  + P     
Sbjct: 167 ----KLP---DLPPSLEFIAAGNN-QLEELP-ELQNLPFLTAIYADNNSLK-KLP---DL 213

Query: 250 FSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKC 309
             SL+ +   +     +    + N   L  ++   N     L     +L +L V      
Sbjct: 214 PLSLESIVAGNNIL--EELPELQNLPFLTTIYADNNLLK-TLPDLPPSLEALNVRD---- 266

Query: 310 NFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTKATF 369
           N+   +    ++LT L V +   +          L     NL  L+ S N    L     
Sbjct: 267 NYLTDLPELPQSLTFLDVSENIFSG---------LSELPPNLYYLNASSNEIRSLC---- 313

Query: 370 DATTDTTSQKIQYRGLRSCNLTKFPNFLENQNHLVILNLSDNRI 413
                     ++   + +  L + P        L  L  S N +
Sbjct: 314 -----DLPPSLEELNVSNNKLIELPALPPR---LERLIASFNHL 349

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 86.6 bits (215), Expect = 1e-18
 Identities = 69/375 (18%), Positives = 117/375 (31%), Gaps = 80/375 (21%)

Query: 66  FKLVHLKWLNLALNDFNSSEIPPEIINLSRL-------------------ELQKPSFENL 106
                L+      +  N +E+P E  N+                      E ++ +   L
Sbjct: 8   VSNTFLQEPLRHSS--NLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRL 65

Query: 107 FE-KLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSS 165
            +        L L ++ + S++P    +L SL         L              +P  
Sbjct: 66  RDCLDRQAHELELNNLGL-SSLPELPPHLESL---VASCNSLT------------ELPEL 109

Query: 166 LGNLSKLLHLDLSLNELQGEAASFR-------CFGELPISMGNLGSLKELDLSQNGFFGE 218
             +L  LL  + +L  L                  +LP  + N   LK +D+  N    +
Sbjct: 110 PQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNN-SLKK 167

Query: 219 LPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQ 278
           LP    +   LE +    N+L  E P    N   L  +   +     K+P    +   L+
Sbjct: 168 LPDLPPS---LEFIAAGNNQLE-ELP-ELQNLPFLTAIYADNNSL-KKLPDLPLS---LE 218

Query: 279 FLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGT 338
            +  G N      L  + NL  L  IY         +     +L  L V D         
Sbjct: 219 SIVAGNNILE--ELPELQNLPFLTTIYADNNLLK-TLPDLPPSLEALNVRDNYLTD---- 271

Query: 339 VELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLTKFPNFLE 398
                L    ++L  LD+S N  S L+              + Y    S  +    +   
Sbjct: 272 -----LPELPQSLTFLDVSENIFSGLS---------ELPPNLYYLNASSNEIRSLCDLPP 317

Query: 399 NQNHLVILNLSDNRI 413
           +   L  LN+S+N++
Sbjct: 318 S---LEELNVSNNKL 329

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 81.6 bits (202), Expect = 5e-17
 Identities = 61/351 (17%), Positives = 107/351 (30%), Gaps = 89/351 (25%)

Query: 63  SSLFKLVHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENLFEKLSNLKTLNLGDVS 122
                L  L   N  L     S++PP                        L+ L + +  
Sbjct: 108 ELPQSLKSLLVDNNNLKAL--SDLPP-----------------------LLEYLGVSNNQ 142

Query: 123 IDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNEL 182
           +   +P  ++N S L  + + N  L+            ++P    +L     +    N+L
Sbjct: 143 L-EKLP-ELQNSSFLKIIDVDNNSLK------------KLPDLPPSLE---FIAAGNNQL 185

Query: 183 QGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGE 242
           +          ELP  + NL  L  +    N     L        SLE +    N L   
Sbjct: 186 E----------ELP-ELQNLPFLTAIYADNN----SLKKLPDLPLSLESIVAGNNILE-- 228

Query: 243 FPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLE 302
                 N   L  +   +      +P    +   L+ L +  N  + DL     +L  L+
Sbjct: 229 ELPELQNLPFLTTIYADNNLL-KTLPDLPPS---LEALNVRDNYLT-DLPELPQSLTFLD 283

Query: 303 VIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSS 362
           V      N    ++    NL  L              E+  L     +LE L++S N+  
Sbjct: 284 VSE----NIFSGLSELPPNLYYLNASS---------NEIRSLCDLPPSLEELNVSNNKLI 330

Query: 363 VLTKATFDATTDTTSQKIQYRGLRSCNLTKFPNFLENQNHLVILNLSDNRI 413
            L              +++       +L + P   +N   L  L++  N +
Sbjct: 331 EL---------PALPPRLERLIASFNHLAEVPELPQN---LKQLHVEYNPL 369

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 79.3 bits (196), Expect = 3e-16
 Identities = 56/322 (17%), Positives = 103/322 (31%), Gaps = 67/322 (20%)

Query: 58  SINSSSSLFKLVHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENL--FEKLSNLKT 115
            +     L     LK +++  N     ++P    +L  +       E L   + L  L  
Sbjct: 142 QLEKLPELQNSSFLKIIDVDNNSL--KKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTA 199

Query: 116 LNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHL 175
           +   + S+   +P    +L S+      N  L                  L NL  L  +
Sbjct: 200 IYADNNSL-KKLPDLPLSLESIV---AGNNIL-------------EELPELQNLPFLTTI 242

Query: 176 DLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLS 235
               N L+           LP       SL+ L++  N +  +LP   ++L  L+  +  
Sbjct: 243 YADNNLLK----------TLP---DLPPSLEALNVRDN-YLTDLPELPQSLTFLDVSENI 288

Query: 236 FNKLSGEFP-------------WSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFL 282
           F+ LS   P                    SL+ LN+ +     ++P        L+ L  
Sbjct: 289 FSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKL-IELPALPPR---LERLIA 344

Query: 283 GFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELD 342
            FN+ + ++     NL+ L V    + N   +      ++  L +             L 
Sbjct: 345 SFNHLA-EVPELPQNLKQLHV----EYNPLREFPDIPESVEDLRMNS----------HLA 389

Query: 343 VLLTSWKNLEALDISLNRSSVL 364
            +    +NL+ L +  N     
Sbjct: 390 EVPELPQNLKQLHVETNPLREF 411

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 60.8 bits (148), Expect = 3e-10
 Identities = 44/237 (18%), Positives = 79/237 (33%), Gaps = 55/237 (23%)

Query: 68  LVHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENLFEKLSNLKTLNLGDVSIDSTI 127
              L+ LN+  N      +P    +L+ L++ +  F  L E   NL  LN     I  ++
Sbjct: 256 PPSLEALNVRDNYLTD--LPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEI-RSL 312

Query: 128 PHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAA 187
                +L  L   ++ N +L              +P+    L +   L  S N L     
Sbjct: 313 CDLPPSLEEL---NVSNNKLI------------ELPALPPRLER---LIASFNHLA---- 350

Query: 188 SFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNL----------------FSLEK 231
                 E+P    N   LK+L +  N    E P    ++                 +L++
Sbjct: 351 ------EVPELPQN---LKQLHVEYN-PLREFPDIPESVEDLRMNSHLAEVPELPQNLKQ 400

Query: 232 LDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFS 288
           L +  N L  EFP    +   L++ + R          +     +L+      ++  
Sbjct: 401 LHVETNPLR-EFPDIPESVEDLRMNSERVVDP---YEFAHETTDKLEDDVFEHHHHH 453

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 89.2 bits (221), Expect = 2e-19
 Identities = 64/375 (17%), Positives = 125/375 (33%), Gaps = 56/375 (14%)

Query: 48  LNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPPEII----NLSRLELQKPSF 103
            ++        +        L + K +    +     ++P  ++     +  L L     
Sbjct: 30  YDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTM--RKLPAALLDSFRQVELLNLNDLQI 87

Query: 104 ENL----FEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQIS 159
           E +    F     ++ L +G  +I    PH  +N+  LT + L   +L          + 
Sbjct: 88  EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS--------SLP 139

Query: 160 GRIPSSLGNLSKLLHLDLSLNELQG-EAASFRCFGELPISMGNLGSLKELDLSQNGFFGE 218
                   N  KL  L +S N L+  E  +F+             SL+ L LS N     
Sbjct: 140 ---RGIFHNTPKLTTLSMSNNNLERIEDDTFQ----------ATTSLQNLQLSSNR-LTH 185

Query: 219 LPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQ 278
           +   +  + SL   ++S+N LS     +     +++ L+       + V   +     L 
Sbjct: 186 VD--LSLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSI-NVVRGPV--NVELT 235

Query: 279 FLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGT 338
            L L  NN +      + N   L  + ++       +      + +L  L ++ N     
Sbjct: 236 ILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR---L 290

Query: 339 VELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLTKFPNFLE 398
           V L++       L+ LD+S N    + +            +++   L   ++      L 
Sbjct: 291 VALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFD------RLENLYLDHNSIVTLK--LS 342

Query: 399 NQNHLVILNLSDNRI 413
             + L  L LS N  
Sbjct: 343 THHTLKNLTLSHNDW 357

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 63.0 bits (153), Expect = 7e-11
 Identities = 36/197 (18%), Positives = 67/197 (34%), Gaps = 37/197 (18%)

Query: 47  KLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPPEI-INLSRLELQKPSFEN 105
             N+S+       N  S+L   + ++ L+ + N    + +   + + L+ L+LQ  +  +
Sbjct: 196 HANVSY-------NLLSTLAIPIAVEELDASHNSI--NVVRGPVNVELTILKLQHNNLTD 246

Query: 106 L--FEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIP 163
                    L  ++L    ++  + H    +  L  + + N  L A            + 
Sbjct: 247 TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA------------LN 294

Query: 164 SSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSI 223
                +  L  LDLS N L            +  +      L+ L L  N     L  S 
Sbjct: 295 LYGQPIPTLKVLDLSHNHLL----------HVERNQPQFDRLENLYLDHN-SIVTLKLS- 342

Query: 224 RNLFSLEKLDLSFNKLS 240
               +L+ L LS N   
Sbjct: 343 -THHTLKNLTLSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 51.9 bits (124), Expect = 2e-07
 Identities = 31/199 (15%), Positives = 68/199 (34%), Gaps = 11/199 (5%)

Query: 216 FGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFT 275
           +  + ++++       + +        F +     ++ K++  ++          + +F 
Sbjct: 16  YKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFR 75

Query: 276 RLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSY 335
           +++ L L           +     +++ +Y+             +N+  L VL + +N  
Sbjct: 76  QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL 135

Query: 336 GGTVELDV-LLTSWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLTKFP 394
                L   +  +   L  L +S N    +   TF ATT      +Q   L S  LT   
Sbjct: 136 ---SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATT-----SLQNLQLSSNRLTHVD 187

Query: 395 NFLENQNHLVILNLSDNRI 413
             L     L   N+S N +
Sbjct: 188 --LSLIPSLFHANVSYNLL 204

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 84.3 bits (208), Expect = 9e-18
 Identities = 53/307 (17%), Positives = 100/307 (32%), Gaps = 48/307 (15%)

Query: 67  KLVHLKWLNLALNDFNSSEIPPEII-NLSRLELQKPSFENLFEKLSNLKTLNLGDVSIDS 125
            +     L L   +   S +P  +   ++ LE+ + +  +L E  ++L+ L+  D  + S
Sbjct: 57  LINQFSELQLNRLNL--SSLPDNLPPQITVLEITQNALISLPELPASLEYLDACDNRL-S 113

Query: 126 TIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGE 185
           T+P    +L  L    + N +L              +P     L  +   +   N+L   
Sbjct: 114 TLPELPASLKHL---DVDNNQLTM------------LPELPALLEYI---NADNNQLT-- 153

Query: 186 AASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPW 245
                    LP       SL+ L +  N     LP    +L   E LD+S N L    P 
Sbjct: 154 --------MLPEL---PTSLEVLSVRNNQL-TFLPELPESL---EALDVSTNLLE-SLPA 197

Query: 246 STGNFSSLK----LLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSL 301
                   +        R     + +P +I +      + L  N  S  +  S+    + 
Sbjct: 198 VPVRNHHSEETEIFFRCRENRI-THIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQ 256

Query: 302 EVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRS 361
              +  +  FS               L  A  ++    +   +   W   E  + +   S
Sbjct: 257 PDYHGPRIYFSMSDGQQNTLHRP---LADAVTAWFPENKQSDVSQIWHAFEHEEHANTFS 313

Query: 362 SVLTKAT 368
           + L + +
Sbjct: 314 AFLDRLS 320

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 79.6 bits (196), Expect = 3e-16
 Identities = 42/225 (18%), Positives = 79/225 (35%), Gaps = 44/225 (19%)

Query: 44  HVIKLNLSHGCLFGSINSSSSLFKLV-HLKWLNLALNDFNSSEIPPEIINLSRLELQKPS 102
            +  L ++        N+  SL +L   L++L+   N  ++  +P    +L  L++    
Sbjct: 81  QITVLEITQ-------NALISLPELPASLEYLDACDNRLST--LPELPASLKHLDVDNNQ 131

Query: 103 FENLFEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRI 162
              L E  + L+ +N  +  + + +P    +L  L   S+RN +L              +
Sbjct: 132 LTMLPELPALLEYINADNNQL-TMLPELPTSLEVL---SVRNNQLT------------FL 175

Query: 163 PSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKE----LDLSQNGFFGE 218
           P    +L  L   D+S N L+           LP         +E        +N     
Sbjct: 176 PELPESLEAL---DVSTNLLE----------SLPAVPVRNHHSEETEIFFRCREN-RITH 221

Query: 219 LPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGF 263
           +P +I +L     + L  N LS     S    ++    +     F
Sbjct: 222 IPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYF 266

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 74.6 bits (183), Expect = 1e-14
 Identities = 52/288 (18%), Positives = 90/288 (31%), Gaps = 47/288 (16%)

Query: 126 TIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGE 185
           +I   I N  SL+  S  N          +        S+     K      + NE    
Sbjct: 2   SIMLPINNNFSLSQNSFYNT---------ISGTYADYFSAWDKWEKQALPGENRNEAVSL 52

Query: 186 AASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPW 245
                      +    +    EL L++      LP ++     +  L+++ N L    P 
Sbjct: 53  -----------LKECLINQFSELQLNRLNL-SSLPDNLPP--QITVLEITQNALI-SLPE 97

Query: 246 STGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIY 305
              +   L   + R     S +P    +   L+ L +  N  +  L      L  +    
Sbjct: 98  LPASLEYLDACDNR----LSTLPELPAS---LKHLDVDNNQLT-MLPELPALLEYINA-- 147

Query: 306 IAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLT 365
                 + Q+T      T L VL +  N      +L  L    ++LEALD+S N    L 
Sbjct: 148 -----DNNQLTMLPELPTSLEVLSVRNN------QLTFLPELPESLEALDVSTNLLESLP 196

Query: 366 KATFDATTDTTSQKIQYRGLRSCNLTKFPNFLENQNHLVILNLSDNRI 413
                      ++       R   +T  P  + + +    + L DN +
Sbjct: 197 AVPVRNHHSEETEIFFR--CRENRITHIPENILSLDPTCTIILEDNPL 242

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 68.8 bits (168), Expect = 1e-12
 Identities = 36/292 (12%), Positives = 82/292 (28%), Gaps = 42/292 (14%)

Query: 68  LVHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENLFEKLSNLKTLNLGDVSIDSTI 127
              LK L++  N    + +P     L  +         L E  ++L+ L++ +  + + +
Sbjct: 119 PASLKHLDVDNNQL--TMLPELPALLEYINADNNQLTMLPELPTSLEVLSVRNNQL-TFL 175

Query: 128 PHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKL----LHLDLSLNELQ 183
           P   ++L +L    +    L++            +P+            +      N + 
Sbjct: 176 PELPESLEAL---DVSTNLLES------------LPAVPVRNHHSEETEIFFRCRENRIT 220

Query: 184 GEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEF 243
                      +P ++ +L     + L  N           +  + +            F
Sbjct: 221 ----------HIPENILSLDPTCTIILEDN-PLSSRIRESLSQQTAQPDYHGPRIY---F 266

Query: 244 PWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEV 303
             S G  ++L      +   W   P +  +     +        +      +  L     
Sbjct: 267 SMSDGQQNTLHRPLADAVTAW--FPENKQSDVSQIWHAFEHEEHANTFSAFLDRLSDTVS 324

Query: 304 IYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVEL---DVLLTSWKNLE 352
                  F  Q+ + L  L+    L     +          D +  +W NL 
Sbjct: 325 -ARNTSGFREQVAAWLEKLSASAELRQQSFAVAADATESCEDRVALTWNNLR 375

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 82.6 bits (204), Expect = 3e-17
 Identities = 69/373 (18%), Positives = 130/373 (34%), Gaps = 16/373 (4%)

Query: 47  KLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPP----EIINLSRLELQKPS 102
            L+LS    F ++        +  LK+L L+      S + P     I  +  +  +   
Sbjct: 94  HLDLSF-NAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYG 152

Query: 103 FENLFEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRI 162
            +   E L +  T +L  V   +   H I ++S  T  +L    ++ +           I
Sbjct: 153 EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSI 212

Query: 163 PSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTS 222
            + L    KL +L L+  E    +   R    +  +     S+  + L     F +   S
Sbjct: 213 LAKLQTNPKLSNLTLNNIETTWNS-FIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYS 271

Query: 223 IRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFL 282
             +L +L    +  +       +    FS++ + N    G            +    L  
Sbjct: 272 GTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDF 331

Query: 283 GFNNFSGDLLGSIGNLRSLEVIYIAKCNFS--GQITSSLRNLTQLVVLDMAQNSYGGTVE 340
             N  +  +  + G+L  LE + +         +I      +  L  LD++QNS     E
Sbjct: 332 SNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVS-YDE 390

Query: 341 LDVLLTSWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLTKFPNFLENQ 400
                +  K+L +L++S N    LT   F         +I+   L S  +   P  +   
Sbjct: 391 KKGDCSWTKSLLSLNMSSNI---LTDTIFRCLP----PRIKVLDLHSNKIKSIPKQVVKL 443

Query: 401 NHLVILNLSDNRI 413
             L  LN++ N++
Sbjct: 444 EALQELNVASNQL 456

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 71.8 bits (176), Expect = 1e-13
 Identities = 49/259 (18%), Positives = 92/259 (35%), Gaps = 31/259 (11%)

Query: 39  NKNTGHVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPPEII--NLSRL 96
                 V   ++S+  L G ++     +    LK L++     +    P   I    S +
Sbjct: 243 LVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNM 302

Query: 97  ELQKPSFENL-------FEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQA 149
            ++  +             K+S    L+  +  +  T+  N  +L+ L  + L+  +L+ 
Sbjct: 303 NIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKE 362

Query: 150 MCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELD 209
           +          +I      +  L  LD+S N +  +     C            SL  L+
Sbjct: 363 L---------SKIAEMTTQMKSLQQLDISQNSVSYDEKKGDC--------SWTKSLLSLN 405

Query: 210 LSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPH 269
           +S N     +   +     ++ LDL  NK+    P       +L+ LN+ S      VP 
Sbjct: 406 MSSNILTDTIFRCL--PPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQL-KSVPD 461

Query: 270 SI-GNFTRLQFLFLGFNNF 287
            I    T LQ ++L  N +
Sbjct: 462 GIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 62.6 bits (152), Expect = 7e-11
 Identities = 58/316 (18%), Positives = 102/316 (32%), Gaps = 37/316 (11%)

Query: 111 SNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLS 170
                LN+    I      +I +LS L  + + +  +Q +             S      
Sbjct: 21  QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYL-----------DISVFKFNQ 69

Query: 171 KLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTS--IRNLFS 228
           +L +LDLS N+L              IS     +LK LDLS N  F  LP      N+  
Sbjct: 70  ELEYLDLSHNKLVK------------ISCHPTVNLKHLDLSFN-AFDALPICKEFGNMSQ 116

Query: 229 LEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPH---SIGNFTRLQFLFLGFN 285
           L+ L LS   L         + +  K+L +    +  K         N   L  +F    
Sbjct: 117 LKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNK 176

Query: 286 NFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELD--- 342
            F   L  S+  + +LE+  I       + +  L  L +L       N     +E     
Sbjct: 177 EFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNS 236

Query: 343 ----VLLTSWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLTKFPNFLE 398
               + L     +    IS  +            + T+ + +    + S       +++ 
Sbjct: 237 FIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIY 296

Query: 399 NQ-NHLVILNLSDNRI 413
              +++ I N + +  
Sbjct: 297 EIFSNMNIKNFTVSGT 312

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 80.1 bits (198), Expect = 6e-17
 Identities = 59/262 (22%), Positives = 101/262 (38%), Gaps = 35/262 (13%)

Query: 84  SEIPPEI-INLSRLELQKPSFENL----FEKLSNLKTLNLGD--VSIDSTIPHNIKNLSS 136
           + +P  I  + +RLEL+    ++L    F+KL+ L  L+L    +S       +    +S
Sbjct: 20  TSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTS 79

Query: 137 LTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQ--GEAASFRCFGE 194
           L ++ L    +              + S+   L +L HLD   + L+   E + F     
Sbjct: 80  LKYLDLSFNGVI------------TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL---- 123

Query: 195 LPISMGNLGSLKELDLSQNGFFGELPTSI-RNLFSLEKLDLSFNKLSGEFPWST-GNFSS 252
                 +L +L  LD+S           I   L SLE L ++ N     F         +
Sbjct: 124 ------SLRNLIYLDISHTHT-RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN 176

Query: 253 LKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFS 312
           L  L+L  C      P +  + + LQ L +  NNF          L SL+V+  +  +  
Sbjct: 177 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 236

Query: 313 GQITSSLRNL-TQLVVLDMAQN 333
                 L++  + L  L++ QN
Sbjct: 237 TSKKQELQHFPSSLAFLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 78.1 bits (193), Expect = 2e-16
 Identities = 53/248 (21%), Positives = 96/248 (38%), Gaps = 25/248 (10%)

Query: 125 STIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQG 184
           +++P  I   SS T + L +            ++          L++L  L LS N L  
Sbjct: 20  TSVPTGI--PSSATRLELESN-----------KLQSLPHGVFDKLTQLTKLSLSSNGLSF 66

Query: 185 EAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFP 244
           +    +             SLK LDLS NG    + ++   L  LE LD   + L     
Sbjct: 67  KGCCSQSDF-------GTTSLKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQHSNLKQMSE 118

Query: 245 WST-GNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLL-GSIGNLRSLE 302
           +S   +  +L  L++                + L+ L +  N+F  + L      LR+L 
Sbjct: 119 FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT 178

Query: 303 VIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSS 362
            + +++C       ++  +L+ L VL+M+ N++  +++         +L+ LD SLN   
Sbjct: 179 FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF-SLDTFPY-KCLNSLQVLDYSLNHIM 236

Query: 363 VLTKATFD 370
              K    
Sbjct: 237 TSKKQELQ 244

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 77.0 bits (190), Expect = 6e-16
 Identities = 50/248 (20%), Positives = 83/248 (33%), Gaps = 45/248 (18%)

Query: 61  SSSSLFKLVHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENLFEKLSNLKTLNLGD 120
                 KL  L  L+L+ N  +                            ++LK L+L  
Sbjct: 44  PHGVFDKLTQLTKLSLSSNGLSFKGCCS----------------QSDFGTTSLKYLDLSF 87

Query: 121 VSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLN 180
             +  T+  N   L  L  +  ++  L+ M             S   +L  L++LD+S  
Sbjct: 88  NGV-ITMSSNFLGLEQLEHLDFQHSNLKQMSE----------FSVFLSLRNLIYLDISHT 136

Query: 181 ELQGEAASFRCFGELPISM-GNLGSLKELDLSQNGFFGELPTSI-RNLFSLEKLDLSFNK 238
             +               +   L SL+ L ++ N F       I   L +L  LDLS  +
Sbjct: 137 HTR----------VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 186

Query: 239 LSGEFPWST-GNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFS----GDLLG 293
           L  +   +   + SSL++LN+    F+S           LQ L    N+       +L  
Sbjct: 187 LE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH 245

Query: 294 SIGNLRSL 301
              +L  L
Sbjct: 246 FPSSLAFL 253

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 74.3 bits (183), Expect = 6e-15
 Identities = 58/232 (25%), Positives = 87/232 (37%), Gaps = 34/232 (14%)

Query: 40  KNTGHVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPPEIINLSRLE-- 97
                + KL+LS   L      S S F    LK+L+L+ N      +    + L +LE  
Sbjct: 49  DKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGV--ITMSSNFLGLEQLEHL 106

Query: 98  ------LQKPSFENLFEKLSNLKTLNLGDVSIDSTIPHNI-KNLSSLTFVSLRNCELQAM 150
                 L++ S  ++F  L NL  L++          + I   LSSL  + +        
Sbjct: 107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT-RVAFNGIFNGLSSLEVLKMAGNSF--- 162

Query: 151 CSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQG-EAASFRCFGELPISMGNLGSLKELD 209
                      +P     L  L  LDLS  +L+     +F           +L SL+ L+
Sbjct: 163 -------QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN----------SLSSLQVLN 205

Query: 210 LSQNGFFGELPTSIRNLFSLEKLDLSFNKLSG-EFPWSTGNFSSLKLLNLRS 260
           +S N FF       + L SL+ LD S N +   +        SSL  LNL  
Sbjct: 206 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 257

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 49.6 bits (119), Expect = 7e-07
 Identities = 36/176 (20%), Positives = 68/176 (38%), Gaps = 31/176 (17%)

Query: 47  KLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPPEI----INLSRLELQKPS 102
            L+  H      ++  S    L +L +L+++    ++      I     +L  L++   S
Sbjct: 105 HLDFQH-SNLKQMSEFSVFLSLRNLIYLDISHT--HTRVAFNGIFNGLSSLEVLKMAGNS 161

Query: 103 F-----ENLFEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQ 157
           F      ++F +L NL  L+L    ++   P    +LSSL  +++ +    ++       
Sbjct: 162 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLD------ 215

Query: 158 ISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQN 213
                      L+ L  LD SLN +    +  +     P       SL  L+L+QN
Sbjct: 216 -----TFPYKCLNSLQVLDYSLNHIM--TSKKQELQHFP------SSLAFLNLTQN 258

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 79.0 bits (195), Expect = 3e-16
 Identities = 55/260 (21%), Positives = 89/260 (34%), Gaps = 36/260 (13%)

Query: 84  SEIPPEI-INLSRLELQKPSFENL----FEKLSNLKTLNLGDVSIDSTIPHNI-KNLSSL 137
            E+P  I  N   L L +   + +    F+ L +L+ L L    I  TI       L++L
Sbjct: 56  REVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHI-RTIEIGAFNGLANL 114

Query: 138 TFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQG-EAASFRCFGELP 196
             + L +  L          I      +   LSKL  L L  N ++   + +F       
Sbjct: 115 NTLELFDNRLT--------TIP---NGAFVYLSKLKELWLRNNPIESIPSYAFN------ 157

Query: 197 ISMGNLGSLKELDLSQNGFFGELPTSI-RNLFSLEKLDLSFNKLS--GEFPWSTGNFSSL 253
                + SL+ LDL +      +       L +L  L+L+   L               L
Sbjct: 158 ----RIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLT----PLIKL 209

Query: 254 KLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSG 313
             L+L      +  P S      LQ L++  +        +  NL+SL  I +A  N + 
Sbjct: 210 DELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTL 269

Query: 314 QITSSLRNLTQLVVLDMAQN 333
                   L  L  + +  N
Sbjct: 270 LPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 67.9 bits (166), Expect = 1e-12
 Identities = 49/264 (18%), Positives = 96/264 (36%), Gaps = 34/264 (12%)

Query: 111 SNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLS 170
           +    +     ++   +P  I   ++   ++L              QI     +S  +L 
Sbjct: 43  NQFSKVICVRKNLRE-VPDGI--STNTRLLNLHEN-----------QIQIIKVNSFKHLR 88

Query: 171 KLLHLDLSLNELQG-EAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSI-RNLFS 228
            L  L LS N ++  E  +F            L +L  L+L  N     +P      L  
Sbjct: 89  HLEILQLSRNHIRTIEIGAFN----------GLANLNTLELFDN-RLTTIPNGAFVYLSK 137

Query: 229 LEKLDLSFNKLSGEFPWST-GNFSSLKLLNLRSCGFWSKVPHSI-GNFTRLQFLFLGFNN 286
           L++L L  N +    P        SL+ L+L      S +        + L++L L   N
Sbjct: 138 LKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN 196

Query: 287 FSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLT 346
                + ++  L  L+ + ++  + S     S + L  L  L M Q+     +E +    
Sbjct: 197 LRE--IPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ-VIERNAF-D 252

Query: 347 SWKNLEALDISLNRSSVLTKATFD 370
           + ++L  ++++ N  ++L    F 
Sbjct: 253 NLQSLVEINLAHNNLTLLPHDLFT 276

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 65.2 bits (159), Expect = 1e-11
 Identities = 42/217 (19%), Positives = 83/217 (38%), Gaps = 21/217 (9%)

Query: 204 SLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGF 263
           + + L+L +N        S ++L  LE L LS N +      +    ++L  L L     
Sbjct: 65  NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL 124

Query: 264 WSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITS----SL 319
            +    +    ++L+ L+L  N        +   + SL  + + +     +++     + 
Sbjct: 125 TTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELK---RLSYISEGAF 181

Query: 320 RNLTQLVVLDMAQNSYGGTVELDVL--LTSWKNLEALDISLNRSSVLTKATFDATTDTTS 377
             L+ L  L++A  +      L  +  LT    L+ LD+S N  S +   +F        
Sbjct: 182 EGLSNLRYLNLAMCN------LREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLM---- 231

Query: 378 QKIQYRGLRSCNLTKFP-NFLENQNHLVILNLSDNRI 413
             +Q   +    +     N  +N   LV +NL+ N +
Sbjct: 232 -HLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNL 267

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 50.5 bits (121), Expect = 5e-07
 Identities = 31/161 (19%), Positives = 58/161 (36%), Gaps = 31/161 (19%)

Query: 61  SSSSLFKLVHLKWLNLALNDFNS-SEIPPEI----INLSRLELQKPSFENL--FEKLSNL 113
            S +  ++  L+ L+L   +    S I         NL  L L   +   +     L  L
Sbjct: 152 PSYAFNRIPSLRRLDL--GELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKL 209

Query: 114 KTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLL 173
             L+L    + +  P + + L  L  + +   ++Q       I+      ++  NL  L+
Sbjct: 210 DELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQV------IE-----RNAFDNLQSLV 258

Query: 174 HLDLSLNELQGEAASFRCFGELPISM-GNLGSLKELDLSQN 213
            ++L+ N L            LP  +   L  L+ + L  N
Sbjct: 259 EINLAHNNLT----------LLPHDLFTPLHHLERIHLHHN 289

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 78.1 bits (193), Expect = 4e-16
 Identities = 53/343 (15%), Positives = 106/343 (30%), Gaps = 70/343 (20%)

Query: 84  SEIPPEI-INLSRLELQKPSFENL----FEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLT 138
            ++P ++  + + L+LQ      +    F+ L NL TL L +  I    P     L  L 
Sbjct: 44  EKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLE 103

Query: 139 FVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQG-EAASFRCFGELPI 197
            + L   +L+             +P  +     L  L +  NE+     + F        
Sbjct: 104 RLYLSKNQLK------------ELPEKM--PKTLQELRVHENEITKVRKSVFN------- 142

Query: 198 SMGNLGSLKELDLSQNGFFGEL--PTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKL 255
               L  +  ++L  N          + + +  L  + ++   ++   P   G   SL  
Sbjct: 143 ---GLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIP--QGLPPSLTE 196

Query: 256 LNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQI 315
           L+L           S+     L  L L FN+ S    GS+ N   L  +++       ++
Sbjct: 197 LHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KV 255

Query: 316 TSSLRNLTQLVVLDMAQNS----YGGTVELDVLLTSWKNLEALDISLN--RSSVLTKATF 369
              L +   + V+ +  N+               T   +   + +  N  +   +  +TF
Sbjct: 256 PGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTF 315

Query: 370 DATTDTTSQKIQYRGLRSCNLTKFPNFLENQNHLVILNLSDNR 412
                        R +                    + L + +
Sbjct: 316 -------------RCVYV---------------RAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 74.7 bits (184), Expect = 5e-15
 Identities = 60/306 (19%), Positives = 102/306 (33%), Gaps = 55/306 (17%)

Query: 111 SNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLS 170
            +   L+L +  I      + KNL +L  + L N            +IS   P +   L 
Sbjct: 52  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN-----------KISKISPGAFAPLV 100

Query: 171 KLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLE 230
           KL  L LS N+L+          ELP  M    +L+EL + +N       +    L  + 
Sbjct: 101 KLERLYLSKNQLK----------ELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMI 148

Query: 231 KLDLSFNKLSGEFPWSTGNFS---SLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNF 287
            ++L  N L        G F     L  + +      + +P   G    L  L L  N  
Sbjct: 149 VVELGTNPLK-SSGIENGAFQGMKKLSYIRIADTNI-TTIPQ--GLPPSLTELHLDGNKI 204

Query: 288 SGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTS 347
           +     S+  L +L  + ++  + S     SL N   L  L +  N     V++   L  
Sbjct: 205 TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK---LVKVPGGLAD 261

Query: 348 WKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLTKFPNFLENQNHLVILN 407
            K ++ + +  N  S +    F                        P +   +     ++
Sbjct: 262 HKYIQVVYLHNNNISAIGSNDF----------------------CPPGYNTKKASYSGVS 299

Query: 408 LSDNRI 413
           L  N +
Sbjct: 300 LFSNPV 305

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 73.9 bits (182), Expect = 1e-14
 Identities = 57/296 (19%), Positives = 98/296 (33%), Gaps = 57/296 (19%)

Query: 61  SSSSLFKLVHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENLFEKLSNLKTLNLGD 120
                  L +L  L L  N    S+I P                  F  L  L+ L L  
Sbjct: 68  KDGDFKNLKNLHTLILINNKI--SKISP----------------GAFAPLVKLERLYLSK 109

Query: 121 VSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLN 180
             +   +P  +    +L  + +   E+        ++      S    L++++ ++L  N
Sbjct: 110 NQL-KELPEKM--PKTLQELRVHENEITK------VR-----KSVFNGLNQMIVVELGTN 155

Query: 181 ELQGEAASFRCFGELP--------------ISMGNLGSLKELDLSQNGFFGELPT-SIRN 225
            L+        F  +               I  G   SL EL L  N    ++   S++ 
Sbjct: 156 PLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKI-TKVDAASLKG 214

Query: 226 LFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFN 285
           L +L KL LSFN +S     S  N   L+ L+L +     KVP  + +   +Q ++L  N
Sbjct: 215 LNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL-VKVPGGLADHKYIQVVYLHNN 273

Query: 286 NFSG------DLLGSIGNLRSLEVIYIA--KCNFSGQITSSLRNLTQLVVLDMAQN 333
           N S          G      S   + +      +     S+ R +     + +   
Sbjct: 274 NISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 70.8 bits (174), Expect = 8e-14
 Identities = 61/275 (22%), Positives = 99/275 (36%), Gaps = 34/275 (12%)

Query: 144 NCELQAM-CSF-FLIQISGRIPSSLGNLSKLLHLDLSLNELQG-EAASFRCFGELPISMG 200
            C L+ + CS   L ++   +P           LDL  N++   +   F+          
Sbjct: 30  QCHLRVVQCSDLGLEKVPKDLPPDT------ALLDLQNNKITEIKDGDFK---------- 73

Query: 201 NLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRS 260
           NL +L  L L  N      P +   L  LE+L LS N+L  E P       +L+ L +  
Sbjct: 74  NLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELP--EKMPKTLQELRVHE 130

Query: 261 CGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLL--GSIGNLRSLEVIYIAKCNFSGQITSS 318
                          ++  + LG N      +  G+   ++ L  I IA  N +  I   
Sbjct: 131 NEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQG 189

Query: 319 LRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDTTSQ 378
           L     L  L +  N     V+   L     NL  L +S N  S +   +   T      
Sbjct: 190 L--PPSLTELHLDGNKIT-KVDAASL-KGLNNLAKLGLSFNSISAVDNGSLANTP----- 240

Query: 379 KIQYRGLRSCNLTKFPNFLENQNHLVILNLSDNRI 413
            ++   L +  L K P  L +  ++ ++ L +N I
Sbjct: 241 HLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNI 275

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 67.7 bits (166), Expect = 8e-13
 Identities = 37/201 (18%), Positives = 69/201 (34%), Gaps = 28/201 (13%)

Query: 47  KLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPPEI-INLSRLELQKPSFEN 105
            + L    L  S   + +   +  L ++ +A  +   + IP  +  +L+ L L       
Sbjct: 149 VVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI--TTIPQGLPPSLTELHLDGNKITK 206

Query: 106 L----FEKLSNLKTLNLGDVSIDSTIPHNI-KNLSSLTFVSLRNCELQAMCSFFLIQISG 160
           +     + L+NL  L L   SI S + +    N   L  + L N +L             
Sbjct: 207 VDAASLKGLNNLAKLGLSFNSI-SAVDNGSLANTPHLRELHLNNNKLV------------ 253

Query: 161 RIPSSLGNLSKLLHLDLSLNELQG-EAASFRCFGELPISMGNLGSLKELDLSQNGF-FGE 218
           ++P  L +   +  + L  N +    +  F   G          S   + L  N   + E
Sbjct: 254 KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNT----KKASYSGVSLFSNPVQYWE 309

Query: 219 LPTSI-RNLFSLEKLDLSFNK 238
           +  S  R ++    + L   K
Sbjct: 310 IQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 65.4 bits (160), Expect = 5e-12
 Identities = 52/272 (19%), Positives = 104/272 (38%), Gaps = 41/272 (15%)

Query: 40  KNTGHVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPPEI-INLSRLEL 98
           KN  ++  L L +  +  S  S  +   LV L+ L L+ N     E+P ++   L  L +
Sbjct: 73  KNLKNLHTLILINNKI--SKISPGAFAPLVKLERLYLSKNQL--KELPEKMPKTLQELRV 128

Query: 99  QKPSF----ENLFEKLSNLKTLNLGDVSI-DSTIPHNI-KNLSSLTFVSLRNCELQAMCS 152
            +       +++F  L+ +  + LG   +  S I +   + +  L+++ + +  +  +  
Sbjct: 129 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ 188

Query: 153 FFLI----------QISGRIPSSLGNLSKLLHLDLSLNELQG-EAASFRCFGELPISMGN 201
                         +I+    +SL  L+ L  L LS N +   +  S            N
Sbjct: 189 GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA----------N 238

Query: 202 LGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLS----GEF--PWSTGNFSSLKL 255
              L+EL L+ N    ++P  + +   ++ + L  N +S     +F  P      +S   
Sbjct: 239 TPHLRELHLNNNKL-VKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSG 297

Query: 256 LNLRS--CGFWSKVPHSIGNFTRLQFLFLGFN 285
           ++L S    +W   P +         + LG  
Sbjct: 298 VSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 75.6 bits (186), Expect = 5e-15
 Identities = 64/284 (22%), Positives = 103/284 (36%), Gaps = 58/284 (20%)

Query: 84  SEIPPEI-INLSRLELQKPSFENL----FEKLSNLKTLNLGDVSIDSTIPHNI-KNLSSL 137
           SE+P  I  N   L L + + + +    F  L +L+ L LG  SI   I       L+SL
Sbjct: 67  SEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSI-RQIEVGAFNGLASL 125

Query: 138 TFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQG-EAASFRCFGELP 196
             + L +  L        I        +   LSKL  L L  N ++   + +F       
Sbjct: 126 NTLELFDNWLTV------IP-----SGAFEYLSKLRELWLRNNPIESIPSYAFN------ 168

Query: 197 ISMGNLGSLKELDLSQNGFFGELPTSI-RNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKL 255
                + SL  LDL +      +       LF+L+ L+L    +         N + L  
Sbjct: 169 ----RVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-----DMPNLTPL-- 217

Query: 256 LNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQI 315
                                L+ L +  N+F     GS   L SL+ +++     S   
Sbjct: 218 -------------------VGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIE 258

Query: 316 TSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLN 359
            ++   L  LV L++A N+   ++  D L T  + L  L +  N
Sbjct: 259 RNAFDGLASLVELNLAHNNL-SSLPHD-LFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 70.2 bits (172), Expect = 3e-13
 Identities = 56/238 (23%), Positives = 93/238 (39%), Gaps = 37/238 (15%)

Query: 61  SSSSLFKLVHLKWLNLALNDFNSSEIPPE----IINLSRLELQK------PSFENLFEKL 110
            + +   L HL+ L L  N  +  +I       + +L+ LEL        PS    FE L
Sbjct: 91  QADTFRHLHHLEVLQLGRN--SIRQIEVGAFNGLASLNTLELFDNWLTVIPS--GAFEYL 146

Query: 111 SNLKTLNLGDVSIDSTIPHNI-KNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNL 169
           S L+ L L +  I  +IP      + SL  + L   +          ++      +   L
Sbjct: 147 SKLRELWLRNNPI-ESIPSYAFNRVPSLMRLDLGELK----------KLEYISEGAFEGL 195

Query: 170 SKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSL 229
             L +L+L +  ++          ++P ++  L  L+EL++S N F    P S   L SL
Sbjct: 196 FNLKYLNLGMCNIK----------DMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSL 244

Query: 230 EKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNF 287
           +KL +  +++S     +    +SL  LNL      S           L  L L  N +
Sbjct: 245 KKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 67.1 bits (164), Expect = 3e-12
 Identities = 48/263 (18%), Positives = 89/263 (33%), Gaps = 32/263 (12%)

Query: 111 SNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLS 170
           +    +      +   +P  I   S+  +++L               I      +  +L 
Sbjct: 54  NQFSKVVCTRRGLSE-VPQGI--PSNTRYLNLMEN-----------NIQMIQADTFRHLH 99

Query: 171 KLLHLDLSLNELQG-EAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSI-RNLFS 228
            L  L L  N ++  E  +F            L SL  L+L  N +   +P+     L  
Sbjct: 100 HLEVLQLGRNSIRQIEVGAFN----------GLASLNTLELFDN-WLTVIPSGAFEYLSK 148

Query: 229 LEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSI-GNFTRLQFLFLGFNNF 287
           L +L L  N +     ++     SL  L+L        +          L++L LG  N 
Sbjct: 149 LRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNI 208

Query: 288 SGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTS 347
               + ++  L  LE + ++  +F      S   L+ L  L +  +     +E +     
Sbjct: 209 KD--MPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS-LIERNAF-DG 264

Query: 348 WKNLEALDISLNRSSVLTKATFD 370
             +L  L+++ N  S L    F 
Sbjct: 265 LASLVELNLAHNNLSSLPHDLFT 287

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 65.9 bits (161), Expect = 6e-12
 Identities = 38/215 (17%), Positives = 77/215 (35%), Gaps = 17/215 (7%)

Query: 204 SLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGF 263
           + + L+L +N        + R+L  LE L L  N +      +    +SL  L L     
Sbjct: 76  NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL 135

Query: 264 WSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITS----SL 319
                 +    ++L+ L+L  N        +   + SL  + + +     ++      + 
Sbjct: 136 TVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELK---KLEYISEGAF 192

Query: 320 RNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDTTSQK 379
             L  L  L++   +      L  L      LE L++S N    +   +F   +      
Sbjct: 193 EGLFNLKYLNLGMCNIKDMPNLTPL----VGLEELEMSGNHFPEIRPGSFHGLS-----S 243

Query: 380 IQYRGLRSCNLTKFP-NFLENQNHLVILNLSDNRI 413
           ++   + +  ++    N  +    LV LNL+ N +
Sbjct: 244 LKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNL 278

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 51.3 bits (123), Expect = 3e-07
 Identities = 37/175 (21%), Positives = 63/175 (36%), Gaps = 33/175 (18%)

Query: 47  KLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNS-SEIPPEI----INLSRLELQKP 101
           +L L +     SI  S +  ++  L  L+L   +      I         NL  L L   
Sbjct: 151 ELWLRN-NPIESI-PSYAFNRVPSLMRLDL--GELKKLEYISEGAFEGLFNLKYLNLGMC 206

Query: 102 SFENL--FEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQIS 159
           + +++     L  L+ L +         P +   LSSL  + + N ++        I+  
Sbjct: 207 NIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSL------IE-- 258

Query: 160 GRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISM-GNLGSLKELDLSQN 213
               ++   L+ L+ L+L+ N L            LP  +   L  L EL L  N
Sbjct: 259 ---RNAFDGLASLVELNLAHNNLS----------SLPHDLFTPLRYLVELHLHHN 300

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 73.0 bits (179), Expect = 1e-14
 Identities = 56/274 (20%), Positives = 86/274 (31%), Gaps = 32/274 (11%)

Query: 55  LFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENL-------- 106
               +   + + K + LK L +      S  +   +  L    LQ+ + ENL        
Sbjct: 54  TEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP 113

Query: 107 ---FEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIP 163
                   +L  LNL +VS  +T    +  L       L+   +    S           
Sbjct: 114 PLLEATGPDLNILNLRNVSW-ATRDAWLAELQQWLKPGLKVLSIAQAHSLNF------SC 166

Query: 164 SSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGF---FGELP 220
             +     L  LDLS N   GE           +      +L+ L L   G     G   
Sbjct: 167 EQVRVFPALSTLDLSDNPELGERGLIS-----ALCPLKFPTLQVLALRNAGMETPSGVCS 221

Query: 221 TSIRNLFSLEKLDLSFNKLSGEFPWSTGNF-SSLKLLNLRSCGFWSKVPHSIGNFTRLQF 279
                   L+ LDLS N L       + ++ S L  LNL   G   +VP  +    +L  
Sbjct: 222 ALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGL-KQVPKGL--PAKLSV 278

Query: 280 LFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSG 313
           L L +N        S   L  +  + +    F  
Sbjct: 279 LDLSYNRLDR--NPSPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 66.1 bits (161), Expect = 3e-12
 Identities = 58/292 (19%), Positives = 96/292 (32%), Gaps = 37/292 (12%)

Query: 85  EIPPEIINLSRLELQKPSFENLFE-----KLSNLKTLNLGDVSIDSTIPHNIK---NLSS 136
           E+     +L  L  +  +  +L +     K  +LK L +    I S I         +S 
Sbjct: 37  ELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISG 96

Query: 137 LTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELP 196
           L  ++L N E+       L++ +            L  L+L         A         
Sbjct: 97  LQELTLENLEVTGTAPPPLLEAT---------GPDLNILNLRNVSWATRDAWL-----AE 142

Query: 197 ISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWST----GNFSS 252
           +       LK L ++Q          +R   +L  LDLS N   GE    +      F +
Sbjct: 143 LQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPT 202

Query: 253 LKLLNLRSCGFWS---KVPHSIGNFTRLQFLFLGFNNFSGDL-LGSIGNLRSLEVIYIAK 308
           L++L LR+ G  +             +LQ L L  N+        S      L  + ++ 
Sbjct: 203 LQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSF 262

Query: 309 CNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNR 360
                Q+   L    +L VLD++ N        D L      +  L +  N 
Sbjct: 263 TGLK-QVPKGL--PAKLSVLDLSYNRLDRNPSPDEL----PQVGNLSLKGNP 307

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 58.8 bits (142), Expect = 7e-10
 Identities = 43/217 (19%), Positives = 72/217 (33%), Gaps = 41/217 (18%)

Query: 48  LNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENLF 107
           LNL +          + L + +      L++   +S                        
Sbjct: 126 LNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSC----------------EQV 169

Query: 108 EKLSNLKTLNLGD--VSIDSTIPHNI--KNLSSLTFVSLRNCELQAMCSFFLIQISGRIP 163
                L TL+L D     +  +   +      +L  ++LRN  ++          SG   
Sbjct: 170 RVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGME--------TPSGVCS 221

Query: 164 SSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSI 223
           +      +L  LDLS N L+  A +  C             L  L+LS  G   ++P  +
Sbjct: 222 ALAAARVQLQGLDLSHNSLRDAAGAPSCD--------WPSQLNSLNLSFTG-LKQVPKGL 272

Query: 224 RNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRS 260
                L  LDLS+N+L    P S      +  L+L+ 
Sbjct: 273 PA--KLSVLDLSYNRLD-RNP-SPDELPQVGNLSLKG 305

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 48.7 bits (116), Expect = 1e-06
 Identities = 40/228 (17%), Positives = 69/228 (30%), Gaps = 16/228 (7%)

Query: 200 GNLGSLKELDLSQNGFFGELP-TSIRNLFSLEKLDLSFNKLSGEFPWS---TGNFSSLKL 255
           G   SL+ L    +        T I    SL++L +   ++     +        S L+ 
Sbjct: 40  GGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQE 99

Query: 256 LNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFS----GDLLGSIGNL--RSLEVIYIAKC 309
           L L +       P  +   T      L   N S       L  +       L+V+ IA+ 
Sbjct: 100 LTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQA 159

Query: 310 NFSGQITSSLRNLTQLVVLDMAQNSYGGTVELD--VLLTSWKNLEALDISLNRSSVLTKA 367
           +        +R    L  LD++ N   G   L   +    +  L+ L +        +  
Sbjct: 160 HSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGV 219

Query: 368 TFDATTDTTSQKIQYRGLRSCNLTKFPN--FLENQNHLVILNLSDNRI 413
                       +Q   L   +L         +  + L  LNLS   +
Sbjct: 220 CSALAAARVQ--LQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGL 265

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 72.4 bits (178), Expect = 3e-14
 Identities = 53/305 (17%), Positives = 87/305 (28%), Gaps = 54/305 (17%)

Query: 111 SNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLS 170
            +   L+L +  I      + K L  L  + L N            +IS     +   L 
Sbjct: 54  PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNN-----------KISKIHEKAFSPLR 102

Query: 171 KLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLE 230
           KL  L +S N L              I      SL EL +  N            L ++ 
Sbjct: 103 KLQKLYISKNHLVE------------IPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMN 150

Query: 231 KLDLSFNKLSGEFPWSTGNFSSLKL--LNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFS 288
            +++  N L     +  G F  LKL  L +      + +P        L  L L  N   
Sbjct: 151 CIEMGGNPLE-NSGFEPGAFDGLKLNYLRISEAKL-TGIPK--DLPETLNELHLDHNKIQ 206

Query: 289 GDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSW 348
              L  +     L  + +           SL  L  L  L +  N       +   L   
Sbjct: 207 AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK---LSRVPAGLPDL 263

Query: 349 KNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLTKFPNFLENQNHLVILNL 408
           K L+ + +  N  + +    F                  C +           +   ++L
Sbjct: 264 KLLQVVYLHTNNITKVGVNDF------------------CPVGFGVKRA----YYNGISL 301

Query: 409 SDNRI 413
            +N +
Sbjct: 302 FNNPV 306

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 68.1 bits (167), Expect = 7e-13
 Identities = 51/288 (17%), Positives = 94/288 (32%), Gaps = 39/288 (13%)

Query: 84  SEIPPEI-INLSRLELQKPSFENL----FEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLT 138
             +P EI  + + L+LQ      L    F+ L +L  L L +  I          L  L 
Sbjct: 46  KAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQ 105

Query: 139 FVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQG-EAASFRCFGELPI 197
            + +    L              IP +L   S L+ L +  N ++      F        
Sbjct: 106 KLYISKNHLV------------EIPPNL--PSSLVELRIHDNRIRKVPKGVFS------- 144

Query: 198 SMGNLGSLKELDLSQNGF-FGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLL 256
               L ++  +++  N            +   L  L +S  KL+   P       +L  L
Sbjct: 145 ---GLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIP--KDLPETLNEL 198

Query: 257 NLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQIT 316
           +L      +     +  +++L  L LG N       GS+  L +L  +++     S ++ 
Sbjct: 199 HLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVP 257

Query: 317 SSLRNLTQLVVLDMAQNS----YGGTVELDVLLTSWKNLEALDISLNR 360
           + L +L  L V+ +  N+                       + +  N 
Sbjct: 258 AGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNP 305

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 65.4 bits (160), Expect = 6e-12
 Identities = 55/288 (19%), Positives = 93/288 (32%), Gaps = 33/288 (11%)

Query: 133 NLSSLTFVSLRNCELQAMCSFFLIQISGR----IPSSLGNLSKLLHLDLSLNELQG-EAA 187
           +L SL       C     C   ++Q S      +P  +        LDL  N++      
Sbjct: 15  DLDSLPPTYSAMCPFGCHCHLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKD 72

Query: 188 SFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWST 247
            F+           L  L  L L  N        +   L  L+KL +S N L  E P   
Sbjct: 73  DFK----------GLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIP--P 119

Query: 248 GNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLL--GSIGNLRSLEVIY 305
              SSL  L +                  +  + +G N         G+   L  L  + 
Sbjct: 120 NLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLR 178

Query: 306 IAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLT 365
           I++   +G        L +L    +  N     +EL+ L   +  L  L +  N+  ++ 
Sbjct: 179 ISEAKLTGIPKDLPETLNEL---HLDHNKIQ-AIELEDL-LRYSKLYRLGLGHNQIRMIE 233

Query: 366 KATFDATTDTTSQKIQYRGLRSCNLTKFPNFLENQNHLVILNLSDNRI 413
             +           ++   L +  L++ P  L +   L ++ L  N I
Sbjct: 234 NGSLSFLP-----TLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNI 276

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 65.0 bits (159), Expect = 7e-12
 Identities = 50/272 (18%), Positives = 94/272 (34%), Gaps = 42/272 (15%)

Query: 40  KNTGHVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPPEI-INLSRLEL 98
           K   H+  L L +  +  S     +   L  L+ L ++ N     EIPP +  +L  L +
Sbjct: 75  KGLQHLYALVLVNNKI--SKIHEKAFSPLRKLQKLYISKNHL--VEIPPNLPSSLVELRI 130

Query: 99  QKPSF----ENLFEKLSNLKTLNLGDVSI-DSTIPHNIKNLSSLTFVSLRNCELQAMCSF 153
                    + +F  L N+  + +G   + +S       +   L ++ +   +L  +   
Sbjct: 131 HDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKD 190

Query: 154 FLI----------QISGRIPS-SLGNLSKLLHLDLSLNELQG-EAASFRCFGELPISMGN 201
                        +I   I    L   SKL  L L  N+++  E  S             
Sbjct: 191 LPETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSLS----------F 239

Query: 202 LGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLS----GEFP--WSTGNFSSLKL 255
           L +L+EL L  N     +P  + +L  L+ + L  N ++     +F         +    
Sbjct: 240 LPTLRELHLDNNKL-SRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNG 298

Query: 256 LNLRS--CGFWSKVPHSIGNFTRLQFLFLGFN 285
           ++L +    +W   P +    T    +  G  
Sbjct: 299 ISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 72.9 bits (179), Expect = 4e-14
 Identities = 67/348 (19%), Positives = 121/348 (34%), Gaps = 53/348 (15%)

Query: 84  SEIPPEIINLSRLELQKPSFENL----FEKLSNLKTLNLGDVSIDSTIPHNI-KNLSSLT 138
            ++P    +++ ++L   S   L    F +L +L+ L +   +    I +N  + LSSL 
Sbjct: 23  HQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLI 82

Query: 139 FVSLRNCELQAMCSFFLIQISGRIPSS-LGNLSKLLHLDLSLNELQGEAASFRCFGELPI 197
            + L   +               + +     L+ L  L L+   L G   S   F     
Sbjct: 83  ILKLDYNQFLQ------------LETGAFNGLANLEVLTLTQCNLDGAVLSGNFF----- 125

Query: 198 SMGNLGSLKELDLSQNGFFGELPTSI-RNLFSLEKLDLSFNKLS----GEF-PWSTGNFS 251
               L SL+ L L  N      P S   N+     LDL+FNK+      +   +   +F+
Sbjct: 126 --KPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFT 183

Query: 252 SLKLLN--LRSCGFWSKVPHSIGNFTR---LQFLFLGFNNFSGDLLGSIGNLRSLEVIYI 306
            L+L +  L+    +       GN  +   +  L L  N F   +     +  +      
Sbjct: 184 LLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGT---- 239

Query: 307 AKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTK 366
                  +I S + + +  +       ++               ++  D+S ++   L K
Sbjct: 240 -------KIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLK 292

Query: 367 ATFDATTDTTSQKIQYRGLRSCNLTKFP-NFLENQNHLVILNLSDNRI 413
           + F   TD      +   L    + K   N      HL+ LNLS N +
Sbjct: 293 SVFSHFTDL-----EQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL 335

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 69.0 bits (169), Expect = 6e-13
 Identities = 66/377 (17%), Positives = 126/377 (33%), Gaps = 61/377 (16%)

Query: 47  KLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENL 106
            L +        I  +++   L  L  L L  N F   ++                    
Sbjct: 58  FLKVEQQTPGLVI-RNNTFRGLSSLIILKLDYNQF--LQLETGA---------------- 98

Query: 107 FEKLSNLKTLNLGDVSIDST-IPHNI-KNLSSLTFVSLRNCELQAMC--SFFLIQISGRI 162
           F  L+NL+ L L   ++D   +  N  K L+SL  + LR+  ++ +   SFFL       
Sbjct: 99  FNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFL------- 151

Query: 163 PSSLGNLSKLLHLDLSLNELQG-EAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPT 221
                N+ +   LDL+ N+++         F     ++  L S+   D+++     E   
Sbjct: 152 -----NMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCG 206

Query: 222 SIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLF 281
           +     S+  LDLS N            F ++    ++S    +   +   +F    F  
Sbjct: 207 NPFKNTSITTLDLSGNGFKESMAKRF--FDAIAGTKIQSLILSN-SYNMGSSFGHTNFKD 263

Query: 282 LGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITS----SLRNLTQLVVLDMAQNSYGG 337
                F G     +              +   +I +       + T L  L +AQN    
Sbjct: 264 PDNFTFKGLEASGVKTCD---------LS-KSKIFALLKSVFSHFTDLEQLTLAQNEI-N 312

Query: 338 TVELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLTKFPN-F 396
            ++ +       +L  L++S N    +    F+        K++   L   ++    +  
Sbjct: 313 KIDDNA-FWGLTHLLKLNLSQNFLGSIDSRMFENLD-----KLEVLDLSYNHIRALGDQS 366

Query: 397 LENQNHLVILNLSDNRI 413
                +L  L L  N++
Sbjct: 367 FLGLPNLKELALDTNQL 383

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 66.3 bits (162), Expect = 5e-12
 Identities = 52/310 (16%), Positives = 100/310 (32%), Gaps = 48/310 (15%)

Query: 67  KLVHLKWLNLALNDFNSSEIPP---------EIINLSRLELQKPSFENLFEKLSNLKTLN 117
            L +L+ L L   + + + +           E++ L    ++K    + F  +     L+
Sbjct: 101 GLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLD 160

Query: 118 LGDVSIDSTIPHNIKNLSSLTFVSLRNCELQ--------------------------AMC 151
           L    + S    ++ N     F  LR   +                            + 
Sbjct: 161 LTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLS 220

Query: 152 SFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISM---GNLGSLKEL 208
                +   +        +K+  L LS +   G +     F +             +K  
Sbjct: 221 GNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTC 280

Query: 209 DLSQNGFFGELPTSI-RNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKV 267
           DLS++  F  L  S+  +   LE+L L+ N+++     +    + L  LNL      S  
Sbjct: 281 DLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSID 339

Query: 268 PHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITS----SLRNLT 323
                N  +L+ L L +N+       S   L +L+ + +       Q+ S        LT
Sbjct: 340 SRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTN----QLKSVPDGIFDRLT 395

Query: 324 QLVVLDMAQN 333
            L  + +  N
Sbjct: 396 SLQKIWLHTN 405

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 69.8 bits (170), Expect = 4e-13
 Identities = 49/279 (17%), Positives = 95/279 (34%), Gaps = 58/279 (20%)

Query: 59  INSSSSLFKLVHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENL--FEKLSNLKTL 116
           I               NL       +    E+ ++ ++       +++   + L N+  L
Sbjct: 11  IKQIFPDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKL 70

Query: 117 NLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLD 176
            L    + + I   + NL +L ++ L   +++ +             SSL +L KL  L 
Sbjct: 71  FLNGNKL-TDIK-PLTNLKNLGWLFLDENKIKDL-------------SSLKDLKKLKSLS 115

Query: 177 LSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSF 236
           L  N +           ++   + +L  L+ L L  N       T +  L  L+ L L  
Sbjct: 116 LEHNGIS----------DIN-GLVHLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLED 162

Query: 237 NKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIG 296
           N++S        +   L                     T+LQ L+L  N+ S   L ++ 
Sbjct: 163 NQIS--------DIVPLA------------------GLTKLQNLYLSKNHISD--LRALA 194

Query: 297 NLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSY 335
            L++L+V+ +       +  +   NL     +     S 
Sbjct: 195 GLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 233

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 66.7 bits (162), Expect = 4e-12
 Identities = 56/301 (18%), Positives = 100/301 (33%), Gaps = 49/301 (16%)

Query: 44  HVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPPEIINLSRLEL---QK 100
             IK NL       S+  + +  +L  +  +    +D  S +    + N+++L L   + 
Sbjct: 22  ETIKDNLKKK----SVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKL 77

Query: 101 PSFENLFEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISG 160
              + L   L NL  L L +  I   +  ++K+L  L  +SL +  +  +          
Sbjct: 78  TDIKPL-TNLKNLGWLFLDENKI-KDLS-SLKDLKKLKSLSLEHNGISDI---------- 124

Query: 161 RIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELP 220
              + L +L +L  L L  N++                +  L  L  L L  N       
Sbjct: 125 ---NGLVHLPQLESLYLGNNKITD-----------ITVLSRLTKLDTLSLEDNQI--SDI 168

Query: 221 TSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFL 280
             +  L  L+ L LS N +S     +     +L +L L S    +K  +   N      +
Sbjct: 169 VPLAGLTKLQNLYLSKNHISDLRALA--GLKNLDVLELFSQECLNKPINHQSNLVVPNTV 226

Query: 281 FLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVE 340
                        + G+L + E+I          +   L   T  V     Q    G  +
Sbjct: 227 KN-----------TDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAK 275

Query: 341 L 341
            
Sbjct: 276 A 276

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 65.5 bits (159), Expect = 1e-11
 Identities = 45/255 (17%), Positives = 83/255 (32%), Gaps = 65/255 (25%)

Query: 164 SSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSI 223
                 ++ +  +L    +              ++   L S+ ++  + +        S+
Sbjct: 15  FPDDAFAETIKDNLKKKSVTDA-----------VTQNELNSIDQIIANNSDI-----KSV 58

Query: 224 R---NLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFL 280
           +    L ++ KL L+ NKL+   P +  N  +L  L L            + +  +L+ L
Sbjct: 59  QGIQYLPNVTKLFLNGNKLTDIKPLT--NLKNLGWLFLDENKIKDLSS--LKDLKKLKSL 114

Query: 281 FLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQIT--SSLRNLTQLVVLDMAQNSYGGT 338
            L  N  S   +  + +L  LE +Y+       +IT  + L  LT+L  L +  N     
Sbjct: 115 SLEHNGIS--DINGLVHLPQLESLYLGNN----KITDITVLSRLTKLDTLSLEDNQ---- 164

Query: 339 VELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLTKFPNFLE 398
           +   V L     L+ L +S N  S L                                L 
Sbjct: 165 ISDIVPLAGLTKLQNLYLSKNHISDLR------------------------------ALA 194

Query: 399 NQNHLVILNLSDNRI 413
              +L +L L     
Sbjct: 195 GLKNLDVLELFSQEC 209

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 61.7 bits (149), Expect = 2e-10
 Identities = 45/252 (17%), Positives = 90/252 (35%), Gaps = 48/252 (19%)

Query: 113 LKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKL 172
           +         I    P      +     +L+   +                 +   L+ +
Sbjct: 1   MGETITVSTPIKQIFP--DDAFAETIKDNLKKKSVTDA-------------VTQNELNSI 45

Query: 173 LHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKL 232
             +  + ++++    S +    LP       ++ +L L+ N      P  + NL +L  L
Sbjct: 46  DQIIANNSDIK----SVQGIQYLP-------NVTKLFLNGNKLTDIKP--LTNLKNLGWL 92

Query: 233 DLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLL 292
            L  NK+         +   LK L+L   G  S +   + +  +L+ L+LG N  +   +
Sbjct: 93  FLDENKIKDLSSLK--DLKKLKSLSLEHNGI-SDING-LVHLPQLESLYLGNNKITD--I 146

Query: 293 GSIGNLRSLEVIYIAKCNFSGQIT--SSLRNLTQLVVLDMAQNSYGGTVELDVL--LTSW 348
             +  L  L+ + +       QI+    L  LT+L  L +++N       +  L  L   
Sbjct: 147 TVLSRLTKLDTLSLEDN----QISDIVPLAGLTKLQNLYLSKN------HISDLRALAGL 196

Query: 349 KNLEALDISLNR 360
           KNL+ L++    
Sbjct: 197 KNLDVLELFSQE 208

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 59.0 bits (142), Expect = 1e-09
 Identities = 39/219 (17%), Positives = 75/219 (34%), Gaps = 42/219 (19%)

Query: 205 LKELDLSQNGFFGELPTSIRNLF------SLEKLDLSFNKLSGEFPWSTGNFSSLKLLNL 258
           + E               I+ +F         K +L    ++     +    +S+  +  
Sbjct: 1   MGETITVST--------PIKQIFPDDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIA 50

Query: 259 RSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQIT-- 316
            +      V   I     +  LFL  N  +   +  + NL++L  +++ +     +I   
Sbjct: 51  NNSDI-KSVQ-GIQYLPNVTKLFLNGNKLTD--IKPLTNLKNLGWLFLDEN----KIKDL 102

Query: 317 SSLRNLTQLVVLDMAQNSYGGTVELDVL--LTSWKNLEALDISLNRSSVLTKATFDATTD 374
           SSL++L +L  L +  N       +  +  L     LE+L +  N+ + +T       T 
Sbjct: 103 SSLKDLKKLKSLSLEHN------GISDINGLVHLPQLESLYLGNNKITDIT--VLSRLT- 153

Query: 375 TTSQKIQYRGLRSCNLTKFPNFLENQNHLVILNLSDNRI 413
               K+    L    ++     L     L  L LS N I
Sbjct: 154 ----KLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHI 187

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 67.8 bits (166), Expect = 2e-12
 Identities = 63/371 (16%), Positives = 122/371 (32%), Gaps = 65/371 (17%)

Query: 58  SINSSSSLFKLVHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENL-FEKLSNLKTL 116
               + S  +L  L  L+   +         ++  L++L     +   L   + +NL  L
Sbjct: 31  QATDTISEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLDLSQNTNLTYL 90

Query: 117 NLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLD 176
                 + + +   +  L+ LT+++    +L  +               +     L +L+
Sbjct: 91  ACDSNKL-TNLD--VTPLTKLTYLNCDTNKLTKL--------------DVSQNPLLTYLN 133

Query: 177 LSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSF 236
            + N L              I + +   L ELD   N    +L   +     L  LD SF
Sbjct: 134 CARNTLT------------EIDVSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSF 179

Query: 237 NKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIG 296
           NK++            L  LN  +    +K+   +    +L FL    N  + ++   + 
Sbjct: 180 NKITEL---DVSQNKLLNRLNCDTNNI-TKLD--LNQNIQLTFLDCSSNKLT-EI--DVT 230

Query: 297 NLRSLEVIYIAKCNFSGQITSSLRNLT-------QLVVLDMAQNS-------YGGTVELD 342
            L  L     +    +    S+L  LT        L+ +D+  N+        G     +
Sbjct: 231 PLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKE 290

Query: 343 VLLTSWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLTKFPNFLENQNH 402
           + +T    L  LD        +T+            K+ Y  L +  LT+    + +   
Sbjct: 291 LDVTHNTQLYLLDCQAAG---ITELDLSQNP-----KLVYLYLNNTELTELD--VSHNTK 340

Query: 403 LVILNLSDNRI 413
           L  L+  +  I
Sbjct: 341 LKSLSCVNAHI 351

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 64.3 bits (157), Expect = 2e-11
 Identities = 56/376 (14%), Positives = 114/376 (30%), Gaps = 51/376 (13%)

Query: 44  HVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSF 103
            +  L+  +     SI   + + KL  L  L    N+  + ++  +  NL+ L       
Sbjct: 43  TLTSLDCHNS----SITDMTGIEKLTGLTKLICTSNNITTLDLS-QNTNLTYLACDSNKL 97

Query: 104 ENL-FEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTF-----VSLRNCELQAMCSFFLIQ 157
            NL    L+ L  LN     +          L+ L         +       +       
Sbjct: 98  TNLDVTPLTKLTYLNCDTNKLTKLDVSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHL 157

Query: 158 ISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFG 217
                   +   ++L  LD S N++              + +     L  L+   N    
Sbjct: 158 NKKITKLDVTPQTQLTTLDCSFNKITE------------LDVSQNKLLNRLNCDTNNIT- 204

Query: 218 ELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRL 277
           +L   +     L  LD S NKL+ E   +    + L   +             +   ++L
Sbjct: 205 KLD--LNQNIQLTFLDCSSNKLT-EIDVT--PLTQLTYFDCSVNPLTEL---DVSTLSKL 256

Query: 278 QFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGG 337
             L     +   ++   + +   L       C    ++   + + TQL +LD        
Sbjct: 257 TTLHCIQTDLL-EI--DLTHNTQLIYFQAEGCRKIKELD--VTHNTQLYLLDCQAAG--- 308

Query: 338 TVELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLTKFPNFL 397
             ELD  L+    L  L ++    + L  +           K++     + ++  F + +
Sbjct: 309 ITELD--LSQNPKLVYLYLNNTELTELDVSHN--------TKLKSLSCVNAHIQDFSS-V 357

Query: 398 ENQNHLVILNLSDNRI 413
                L     ++ + 
Sbjct: 358 GKIPALNNNFEAEGQT 373

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 59.7 bits (145), Expect = 6e-10
 Identities = 50/304 (16%), Positives = 88/304 (28%), Gaps = 56/304 (18%)

Query: 111 SNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLS 170
            N  +       + +T   + + L++LT +   N  +  M             + +  L+
Sbjct: 18  DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDM-------------TGIEKLT 64

Query: 171 KLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLE 230
            L  L  + N +            L +S     +L  L    N     L   +  L  L 
Sbjct: 65  GLTKLICTSNNIT----------TLDLS--QNTNLTYLACDSNK-LTNLD--VTPLTKLT 109

Query: 231 KLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGD 290
            L+   NKL+            L  LN             + + T+L  L    N     
Sbjct: 110 YLNCDTNKLTKL---DVSQNPLLTYLNCARNTLTE---IDVSHNTQLTELDCHLNKKITK 163

Query: 291 LLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVL-LTSWK 349
           L   +     L  +  +    +      +     L  L+   N       +  L L    
Sbjct: 164 L--DVTPQTQLTTLDCSFNKIT---ELDVSQNKLLNRLNCDTN------NITKLDLNQNI 212

Query: 350 NLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLTKFPNFLENQNHLVILNLS 409
            L  LD S N+   LT+        T   ++ Y       LT+    +   + L  L+  
Sbjct: 213 QLTFLDCSSNK---LTEIDV-----TPLTQLTYFDCSVNPLTELD--VSTLSKLTTLHCI 262

Query: 410 DNRI 413
              +
Sbjct: 263 QTDL 266

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 41/246 (16%), Positives = 73/246 (29%), Gaps = 37/246 (15%)

Query: 54  CLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENL-FEKLSN 112
           C      +   +     L  L+ + N     ++  +   L+RL     +   L   +   
Sbjct: 155 CHLNKKITKLDVTPQTQLTTLDCSFNKITELDVS-QNKLLNRLNCDTNNITKLDLNQNIQ 213

Query: 113 LKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKL 172
           L  L+     + + I   +  L+ LT+       L  +               +  LSKL
Sbjct: 214 LTFLDCSSNKL-TEID--VTPLTQLTYFDCSVNPLTEL--------------DVSTLSKL 256

Query: 173 LHLDLSLNELQGEAASF----------RCFGELPISMGNLGSLKELDLSQNGFFGELPTS 222
             L     +L     +            C     + + +   L  LD    G   EL   
Sbjct: 257 TTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGI-TELD-- 313

Query: 223 IRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFL 282
           +     L  L L+  +L+ E   S  + + LK L+  +         S+G    L   F 
Sbjct: 314 LSQNPKLVYLYLNNTELT-ELDVS--HNTKLKSLSCVNAHI-QDFS-SVGKIPALNNNFE 368

Query: 283 GFNNFS 288
                 
Sbjct: 369 AEGQTI 374

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 66.3 bits (162), Expect = 3e-12
 Identities = 47/273 (17%), Positives = 96/273 (35%), Gaps = 36/273 (13%)

Query: 58  SINSSSSLFKLVHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENL--FEKLSNLKT 115
           +IN       L +   +    ++   +    ++  ++ L         +   + L+NL  
Sbjct: 8   AINVIFPDPALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEGVQYLNNLIG 67

Query: 116 LNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHL 175
           L L D  I + +   +KNL+ +T + L    L+ +             S++  L  +  L
Sbjct: 68  LELKDNQI-TDLA-PLKNLTKITELELSGNPLKNV-------------SAIAGLQSIKTL 112

Query: 176 DLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLS 235
           DL+  ++                +  L +L+ L L  N       + +  L +L+ L + 
Sbjct: 113 DLTSTQITD-----------VTPLAGLSNLQVLYLDLNQI--TNISPLAGLTNLQYLSIG 159

Query: 236 FNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSI 295
             ++S   P    N S L  L        S +   + +   L  + L  N  S   +  +
Sbjct: 160 NAQVSDLTP--LANLSKLTTLKADDNKI-SDIS-PLASLPNLIEVHLKNNQISD--VSPL 213

Query: 296 GNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVL 328
            N  +L ++ +     + Q      NL    V+
Sbjct: 214 ANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVV 246

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 62.0 bits (151), Expect = 5e-11
 Identities = 40/250 (16%), Positives = 84/250 (33%), Gaps = 33/250 (13%)

Query: 164 SSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSI 223
                L+  + +    + +              ++  +L  +  L     G        +
Sbjct: 13  FPDPALANAIKIAAGKSNVTD-----------TVTQADLDGITTLSAFGTGV--TTIEGV 59

Query: 224 RNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLG 283
           + L +L  L+L  N+++   P    N + +  L L       K   +I     ++ L L 
Sbjct: 60  QYLNNLIGLELKDNQITDLAPLK--NLTKITELELSGNPL--KNVSAIAGLQSIKTLDLT 115

Query: 284 FNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDV 343
               +   +  +  L +L+V+Y+     +    S L  LT L  L +          L  
Sbjct: 116 STQITD--VTPLAGLSNLQVLYLDLNQITN--ISPLAGLTNLQYLSIGNAQVSDLTPLAN 171

Query: 344 LLTSWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLTKFPNFLENQNHL 403
           L      L  L    N+ S ++          +   +    L++  ++     L N ++L
Sbjct: 172 L----SKLTTLKADDNKISDISPL-------ASLPNLIEVHLKNNQISDVSP-LANTSNL 219

Query: 404 VILNLSDNRI 413
            I+ L++  I
Sbjct: 220 FIVTLTNQTI 229

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 57.0 bits (138), Expect = 3e-09
 Identities = 38/201 (18%), Positives = 78/201 (38%), Gaps = 30/201 (14%)

Query: 59  INSSSSLFKLVHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENL--FEKLSNLKTL 116
           I   + L  L  +  L L+ N   +      + ++  L+L      ++     LSNL+ L
Sbjct: 75  ITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVL 134

Query: 117 NLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLD 176
            L    I +  P  +  L++L ++S+ N ++  +             + L NLSKL  L 
Sbjct: 135 YLDLNQITNISP--LAGLTNLQYLSIGNAQVSDL-------------TPLANLSKLTTLK 179

Query: 177 LSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSF 236
              N++           ++   + +L +L E+ L  N      P  + N  +L  + L+ 
Sbjct: 180 ADDNKIS----------DIS-PLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226

Query: 237 NKLSGEFPWSTGNFSSLKLLN 257
             ++ +  +   N     ++ 
Sbjct: 227 QTITNQPVFYNNNLVVPNVVK 247

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 63.8 bits (156), Expect = 4e-12
 Identities = 35/214 (16%), Positives = 69/214 (32%), Gaps = 27/214 (12%)

Query: 100 KPSFENLFEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQIS 159
           K S +N+    S  K    G +   ST       ++SLT+++L N  +  +         
Sbjct: 9   KASQDNVNIPDSTFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDL--------- 59

Query: 160 GRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGEL 219
               + +     +  L ++                 PIS   L +L+ L +       + 
Sbjct: 60  ----TGIEYAHNIKDLTINNIHATNYN---------PIS--GLSNLERLRIMGKDVTSDK 104

Query: 220 PTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQF 279
             ++  L SL  LD+S +               +  ++L   G  + +   +     L+ 
Sbjct: 105 IPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKS 163

Query: 280 LFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSG 313
           L + F+         I +   L  +Y       G
Sbjct: 164 LNIQFDGVHD--YRGIEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 62.3 bits (152), Expect = 1e-11
 Identities = 33/178 (18%), Positives = 60/178 (33%), Gaps = 25/178 (14%)

Query: 67  KLVHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENL--FEKLSNLKTLNLGDVSID 124
           ++  L ++ LA  +           N+  L +      N      LSNL+ L +    + 
Sbjct: 42  QMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVT 101

Query: 125 STIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQG 184
           S    N+  L+SLT + + +                 I + +  L K+  +DLS N    
Sbjct: 102 SDKIPNLSGLTSLTLLDISHS-----------AHDDSILTKINTLPKVNSIDLSYNGAIT 150

Query: 185 EAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGE 242
           +                L  LK L++  +G        I +   L +L      + G+
Sbjct: 151 DIMPL----------KTLPELKSLNIQFDGV--HDYRGIEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 61.9 bits (151), Expect = 2e-11
 Identities = 26/193 (13%), Positives = 66/193 (34%), Gaps = 43/193 (22%)

Query: 168 NLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLF 227
                L+  L  +                I+   + SL  + L+      +L T I    
Sbjct: 21  TFKAYLNGLLGQSSTA------------NITEAQMNSLTYITLANINV-TDL-TGIEYAH 66

Query: 228 SLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNF 287
           +++ L ++    +        N++ +                     + L+ L +   + 
Sbjct: 67  NIKDLTINNIHAT--------NYNPIS------------------GLSNLERLRIMGKDV 100

Query: 288 SGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTS 347
           + D + ++  L SL ++ I+       I + +  L ++  +D++ N     +     L +
Sbjct: 101 TSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM---PLKT 157

Query: 348 WKNLEALDISLNR 360
              L++L+I  + 
Sbjct: 158 LPELKSLNIQFDG 170

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 49.2 bits (118), Expect = 4e-07
 Identities = 24/155 (15%), Positives = 48/155 (30%), Gaps = 41/155 (26%)

Query: 59  INSSSSLFKLVHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENLFEKLSNLKTLNL 118
             + + +  L +L+ L +   D  S +IP                      L++L  L++
Sbjct: 78  ATNYNPISGLSNLERLRIMGKDVTSDKIPN------------------LSGLTSLTLLDI 119

Query: 119 GDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLS 178
              + D +I   I  L  +  + L               I+      L  L +L  L++ 
Sbjct: 120 SHSAHDDSILTKINTLPKVNSIDLSYNG----------AITD--IMPLKTLPELKSLNIQ 167

Query: 179 LNELQGEAASFRCFGELPISMGNLGSLKELDLSQN 213
            + +      +R   + P        L +L     
Sbjct: 168 FDGVH----DYRGIEDFP-------KLNQLYAFSQ 191

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 66.8 bits (163), Expect = 4e-12
 Identities = 54/376 (14%), Positives = 121/376 (32%), Gaps = 38/376 (10%)

Query: 67  KLVHLKWLNLALNDFNSSEIPPEIINLSRLE--------LQKPSFENLFEKLSNLKTLNL 118
            +  L+ L+L+ NDF+   +  E  NL++L          ++     +     +   L+L
Sbjct: 119 PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDL 178

Query: 119 GDVSIDSTIP---------------HNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIP 163
               I                    H     S    +S+       + +  L   + +  
Sbjct: 179 VSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRL 238

Query: 164 SSL--GNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSL--KELDLSQNGFFGEL 219
            +           L+++L  ++          +       +  L    L +++     E 
Sbjct: 239 MTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQF-FWPRPVEYLNIYNLTITERIDREEF 297

Query: 220 PTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQF 279
             S   L SL    +               F+ + +  L              + +   F
Sbjct: 298 TYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTF 357

Query: 280 LFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFS--GQITSSLRNLTQLVVLDMAQNSYGG 337
           L    N F+  +      L+ L+ + + +       ++    +N++ L  LD++ NS   
Sbjct: 358 LNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSL-N 416

Query: 338 TVELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLTKFPNFL 397
           +   D      +++  L++S N    LT + F         K++   L +  +   P  +
Sbjct: 417 SHAYDRTCAWAESILVLNLSSNM---LTGSVFRCLP----PKVKVLDLHNNRIMSIPKDV 469

Query: 398 ENQNHLVILNLSDNRI 413
            +   L  LN++ N++
Sbjct: 470 THLQALQELNVASNQL 485

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 65.3 bits (159), Expect = 1e-11
 Identities = 51/257 (19%), Positives = 86/257 (33%), Gaps = 37/257 (14%)

Query: 44  HVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPPEII--NLSRLELQKP 101
            V  LN+ +  +   I+     +    LK L +            E +    + + ++  
Sbjct: 277 PVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKML 336

Query: 102 SFENL-------FEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFF 154
           S  +            S+   LN        ++      L  L  + L+   L+      
Sbjct: 337 SISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVA 396

Query: 155 LIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQN- 213
           L+           N+S L  LD+SLN L   A    C            S+  L+LS N 
Sbjct: 397 LM---------TKNMSSLETLDVSLNSLNSHAYDRTCAW--------AESILVLNLSSNM 439

Query: 214 ---GFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHS 270
                F  LP        ++ LDL  N++    P    +  +L+ LN+ S    S     
Sbjct: 440 LTGSVFRCLPPK------VKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGV 492

Query: 271 IGNFTRLQFLFLGFNNF 287
               T LQ+++L  N +
Sbjct: 493 FDRLTSLQYIWLHDNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 63.4 bits (154), Expect = 4e-11
 Identities = 65/315 (20%), Positives = 106/315 (33%), Gaps = 37/315 (11%)

Query: 111 SNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSL-GNL 169
              K L+L   SI      +I  LS L  + L +  +++            +   +    
Sbjct: 52  PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRS------------LDFHVFLFN 99

Query: 170 SKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTS--IRNLF 227
             L +LD+S N LQ             IS   + SL+ LDLS N  F  LP      NL 
Sbjct: 100 QDLEYLDVSHNRLQN------------ISCCPMASLRHLDLSFND-FDVLPVCKEFGNLT 146

Query: 228 SLEKLDLSFNKL-SGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSI--GNFTRLQFLFLGF 284
            L  L LS  K    +         S  LL+L S         S+   N T L  +F   
Sbjct: 147 KLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPN 206

Query: 285 NNFSGDLLGSIGNLRSLEVIYI----AKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVE 340
           + FS  +  S+  L  L++  I      C       S L     L+ + +          
Sbjct: 207 SLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCS 266

Query: 341 LDVLLTSW-KNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLTKFPNFLEN 399
           + +    W + +E L+I     +          ++T  + +    +++         L +
Sbjct: 267 VKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYS 326

Query: 400 Q-NHLVILNLSDNRI 413
               + I  LS +  
Sbjct: 327 VFAEMNIKMLSISDT 341

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 55.3 bits (133), Expect = 2e-08
 Identities = 48/356 (13%), Positives = 98/356 (27%), Gaps = 49/356 (13%)

Query: 67  KLVHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENLFEKLSNLKTLNLGDVSIDST 126
            L  L+ L L+ N      +   +                F    +L+ L++    +   
Sbjct: 74  FLSELRVLRLSHNRI--RSLDFHV----------------FLFNQDLEYLDVSHNRL-QN 114

Query: 127 IPHNIKNLSSLTFVSLRNCELQAM--CSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQG 184
           I      ++SL  + L   +   +  C  F            GNL+KL  L LS  + + 
Sbjct: 115 IS--CCPMASLRHLDLSFNDFDVLPVCKEF------------GNLTKLTFLGLSAAKFRQ 160

Query: 185 EAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFP 244
                     L   + +L S   +   +        T++ +L        S         
Sbjct: 161 LDLLPVAHLHLSCILLDLVSY-HIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNA 219

Query: 245 WSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNL--RSLE 302
                 S++KL +       + +       T L              +        R +E
Sbjct: 220 LGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVE 279

Query: 303 VIYIAKCNFSGQI-----TSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDIS 357
            + I     + +I     T S   L  L++  +    +      + L + +  +    +S
Sbjct: 280 YLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLS 337

Query: 358 LNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLTKFPNFLENQNHLVILNLSDNRI 413
           ++ +  +      + +  T                          L  L L  N +
Sbjct: 338 ISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTL----KRLQTLILQRNGL 389

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 65.0 bits (159), Expect = 5e-12
 Identities = 49/230 (21%), Positives = 80/230 (34%), Gaps = 43/230 (18%)

Query: 61  SSSSLFKLVHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENLFEKLSNLKTLNLGD 120
            ++S     +L  L L  N    + I                    F  L+ L+ L+L D
Sbjct: 48  PAASFRACRNLTILWLHSNVL--ARIDA----------------AAFTGLALLEQLDLSD 89

Query: 121 VSIDSTIPHNI-KNLSSLTFVSLRNCELQAMCSFFLIQISGRIPS-SLGNLSKLLHLDLS 178
            +   ++       L  L  + L  C LQ             +       L+ L +L L 
Sbjct: 90  NAQLRSVDPATFHGLGRLHTLHLDRCGLQ------------ELGPGLFRGLAALQYLYLQ 137

Query: 179 LNELQG-EAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFN 237
            N LQ     +FR          +LG+L  L L  N        + R L SL++L L  N
Sbjct: 138 DNALQALPDDTFR----------DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN 187

Query: 238 KLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNF 287
           +++   P +  +   L  L L +    +    ++     LQ+L L  N +
Sbjct: 188 RVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 64.6 bits (158), Expect = 6e-12
 Identities = 45/206 (21%), Positives = 78/206 (37%), Gaps = 16/206 (7%)

Query: 157 QISGRIPSSLGNLSKLLHLDLSLNELQG-EAASFRCFGELPISMGNLGSLKELDLSQNGF 215
           +IS    +S      L  L L  N L   +AA+F            L  L++LDLS N  
Sbjct: 43  RISHVPAASFRACRNLTILWLHSNVLARIDAAAFT----------GLALLEQLDLSDNAQ 92

Query: 216 FGELPTSI-RNLFSLEKLDLSFNKLSGEFPWST-GNFSSLKLLNLRSCGFWSKVPHSIGN 273
              +  +    L  L  L L    L  E         ++L+ L L+     +    +  +
Sbjct: 93  LRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151

Query: 274 FTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQN 333
              L  LFL  N  S     +   L SL+ + + +   +     + R+L +L+ L +  N
Sbjct: 152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211

Query: 334 SYGGTVELDVLLTSWKNLEALDISLN 359
           +    +  +  L   + L+ L ++ N
Sbjct: 212 NL-SALPTEA-LAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 52.3 bits (126), Expect = 7e-08
 Identities = 41/214 (19%), Positives = 70/214 (32%), Gaps = 17/214 (7%)

Query: 204 SLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGF 263
           + + + L  N        S R   +L  L L  N L+     +    + L+ L+L     
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 264 WSKVPHSI-GNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNL 322
              V  +      RL  L L          G    L +L+ +Y+           + R+L
Sbjct: 93  LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDL 152

Query: 323 TQLVVLDMAQNSYGGTVELDVL----LTSWKNLEALDISLNRSSVLTKATFDATTDTTSQ 378
             L  L +  N       +  +         +L+ L +  NR + +    F         
Sbjct: 153 GNLTHLFLHGN------RISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLG----- 201

Query: 379 KIQYRGLRSCNLTKFP-NFLENQNHLVILNLSDN 411
           ++    L + NL+  P   L     L  L L+DN
Sbjct: 202 RLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 50.8 bits (122), Expect = 3e-07
 Identities = 41/176 (23%), Positives = 63/176 (35%), Gaps = 33/176 (18%)

Query: 47  KLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPPEI----INLSRLELQKPS 102
           +L+LS      S+   ++   L  L  L+L        E+ P +      L  L LQ  +
Sbjct: 84  QLDLSDNAQLRSV-DPATFHGLGRLHTLHLDRCGL--QELGPGLFRGLAALQYLYLQDNA 140

Query: 103 FENL----FEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQI 158
            + L    F  L NL  L L    I S      + L SL  + L    +  +        
Sbjct: 141 LQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVH------- 193

Query: 159 SGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPIS-MGNLGSLKELDLSQN 213
               P +  +L +L+ L L  N L            LP   +  L +L+ L L+ N
Sbjct: 194 ----PHAFRDLGRLMTLYLFANNLS----------ALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 50.0 bits (120), Expect = 5e-07
 Identities = 34/196 (17%), Positives = 62/196 (31%), Gaps = 25/196 (12%)

Query: 228 SLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNF 287
           + +++ L  N++S     S     +L +L L S         +      L+ L L  N  
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 288 SGDL-LGSIGNLRSLEVIYIAKCNFSGQITS----SLRNLTQLVVLDMAQNSYGGTVELD 342
              +   +   L  L  +++ +C     +        R L  L  L +  N+      L 
Sbjct: 93  LRSVDPATFHGLGRLHTLHLDRC----GLQELGPGLFRGLAALQYLYLQDNA------LQ 142

Query: 343 VL----LTSWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLTKFP-NFL 397
            L         NL  L +  NR S + +  F          +    L    +     +  
Sbjct: 143 ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLH-----SLDRLLLHQNRVAHVHPHAF 197

Query: 398 ENQNHLVILNLSDNRI 413
            +   L+ L L  N +
Sbjct: 198 RDLGRLMTLYLFANNL 213

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 62.8 bits (153), Expect = 5e-11
 Identities = 45/261 (17%), Positives = 95/261 (36%), Gaps = 38/261 (14%)

Query: 157 QISGRIPSSLGNLSKLLHLDLSLNELQG-EAASFRCFGELPISMGNLGSLKELDLSQNGF 215
           +I+    S L     L  L L+ N +   E  SF           +LGSL+ LDLS N +
Sbjct: 63  RITYISNSDLQRCVNLQALVLTSNGINTIEEDSFS----------SLGSLEHLDLSYN-Y 111

Query: 216 FGELPTSI-RNLFSLEKLDLSFNKLSGEFPWST-GNFSSLKLLNLRSCGFWSKVPHSI-G 272
              L +S  + L SL  L+L  N        S   + + L++L + +   ++K+      
Sbjct: 112 LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFA 171

Query: 273 NFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQ 332
             T L+ L +  ++       S+ +++++  + +        +   +   + +  L++  
Sbjct: 172 GLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRD 231

Query: 333 NSYGGTVELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLTK 392
                                 D+     S L+    ++     +   +   +   +L +
Sbjct: 232 T---------------------DLDTFHFSELSTGETNSLIKKFT--FRNVKITDESLFQ 268

Query: 393 FPNFLENQNHLVILNLSDNRI 413
               L   + L+ L  S N++
Sbjct: 269 VMKLLNQISGLLELEFSRNQL 289

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 61.7 bits (150), Expect = 1e-10
 Identities = 54/305 (17%), Positives = 96/305 (31%), Gaps = 68/305 (22%)

Query: 84  SEIPPEI-INLSRLELQKPSFENL----FEKLSNLKTLNLGDVSIDSTIPHNI-KNLSSL 137
           + IP  +   +  L+L       +     ++  NL+ L L    I +TI  +   +L SL
Sbjct: 44  NSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGI-NTIEEDSFSSLGSL 102

Query: 138 TFVSLRNCELQAMCSFFLIQISGRIPSSL-GNLSKLLHLDLSLNELQ--GEAASFRCFGE 194
             + L    L              + SS    LS L  L+L  N  +  GE + F     
Sbjct: 103 EHLDLSYNYLSN------------LSSSWFKPLSSLTFLNLLGNPYKTLGETSLFS---- 146

Query: 195 LPISMGNLGSLKELDLSQNGFFGELPTSI-RNLFSLEKLDLSFNKLSGEFPWSTGNFSSL 253
                 +L  L+ L +     F ++       L  LE+L++  + L     +   +  S+
Sbjct: 147 ------HLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS---YEPKSLKSI 197

Query: 254 KLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIY-------- 305
                                  +  L L        L   +    S+E +         
Sbjct: 198 ---------------------QNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDT 236

Query: 306 IAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLT 365
                 S   T+SL        + +   S    ++L   ++    L  L+ S N+   + 
Sbjct: 237 FHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQIS---GLLELEFSRNQLKSVP 293

Query: 366 KATFD 370
              FD
Sbjct: 294 DGIFD 298

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 56.7 bits (137), Expect = 4e-09
 Identities = 30/202 (14%), Positives = 70/202 (34%), Gaps = 21/202 (10%)

Query: 67  KLVHLKWLNLALNDFNS---SEIPPEIINLSRLELQKPSF-----ENLFEKLSNLKTLNL 118
            L  L +LNL  N + +   + +   +  L  L +             F  L+ L+ L +
Sbjct: 122 PLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEI 181

Query: 119 GDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLS 178
               + S  P ++K++ +++ + L   +           +         ++  L   D  
Sbjct: 182 DASDLQSYEPKSLKSIQNVSHLILHMKQHIL--------LLEIFVDVTSSVECLELRDTD 233

Query: 179 LNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNK 238
           L+       S      L        + + + ++    F ++   +  +  L +L+ S N+
Sbjct: 234 LDTFHFSELSTGETNSLI----KKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQ 288

Query: 239 LSGEFPWSTGNFSSLKLLNLRS 260
           L           +SL+ + L +
Sbjct: 289 LKSVPDGIFDRLTSLQKIWLHT 310

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 52.0 bits (125), Expect = 1e-07
 Identities = 41/218 (18%), Positives = 83/218 (38%), Gaps = 12/218 (5%)

Query: 204 SLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGF 263
           ++K LDLS N       + ++   +L+ L L+ N ++     S  +  SL+ L+L     
Sbjct: 53  AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 112

Query: 264 WSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITS----SL 319
            +         + L FL L  N +    LG       L  + I +       T       
Sbjct: 113 SNLSSSWFKPLSSLTFLNLLGNPYKT--LGETSLFSHLTKLQILRVGNMDTFTKIQRKDF 170

Query: 320 RNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDTTSQK 379
             LT L  L++  +    + E   L  S +N+  L + + +  +L +   D T+     +
Sbjct: 171 AGLTFLEELEIDASDLQ-SYEPKSL-KSIQNVSHLILHMKQHILLLEIFVDVTSSVECLE 228

Query: 380 IQYRGLRSCNLTKFP----NFLENQNHLVILNLSDNRI 413
           ++   L + + ++      N L  +     + ++D  +
Sbjct: 229 LRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESL 266

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 48.6 bits (116), Expect = 2e-06
 Identities = 32/189 (16%), Positives = 64/189 (33%), Gaps = 27/189 (14%)

Query: 47  KLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPPEII----NLSRLELQKPS 102
            LNL  G  + ++  +S    L  L+ L +  N    ++I  +       L  LE+    
Sbjct: 128 FLNLL-GNPYKTLGETSLFSHLTKLQILRV-GNMDTFTKIQRKDFAGLTFLEELEIDASD 185

Query: 103 FENL----FEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQI 158
            ++      + + N+  L L        +   +   SS+  + LR+ +L    +F   ++
Sbjct: 186 LQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLD---TFHFSEL 242

Query: 159 SGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGEL--------------PISMGNLGS 204
           S    +SL       ++ ++   L            L                    L S
Sbjct: 243 STGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTS 302

Query: 205 LKELDLSQN 213
           L+++ L  N
Sbjct: 303 LQKIWLHTN 311

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 61.7 bits (150), Expect = 8e-11
 Identities = 48/213 (22%), Positives = 76/213 (35%), Gaps = 41/213 (19%)

Query: 84  SEIPPEI-INLSRLELQKPSFENL----FEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLT 138
           + +PP++  + + L L +              + L  LNL    + + +  +   L  L 
Sbjct: 23  TALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL-TKLQVD-GTLPVLG 80

Query: 139 FVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQG-EAASFRCFGELPI 197
            + L + +LQ+            +P     L  L  LD+S N L      + R       
Sbjct: 81  TLDLSHNQLQS------------LPLLGQTLPALTVLDVSFNRLTSLPLGALR------- 121

Query: 198 SMGNLGSLKELDLSQNGFFGELPTSI-RNLFSLEKLDLSFNKLS----GEFPWSTGNFSS 252
               LG L+EL L  N     LP  +      LEKL L+ N L+    G          +
Sbjct: 122 ---GLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANNNLTELPAGLL----NGLEN 173

Query: 253 LKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFN 285
           L  L L+    ++ +P        L F FL  N
Sbjct: 174 LDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 54.7 bits (132), Expect = 1e-08
 Identities = 43/191 (22%), Positives = 67/191 (35%), Gaps = 36/191 (18%)

Query: 61  SSSSLFKLVHLKWLNLALNDFNSSEIPPEIINLSRLEL---QKPSFENLFEKLSNLKTLN 117
           S ++L     L  LNL   +    ++   +  L  L+L   Q  S   L + L  L  L+
Sbjct: 47  SLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLD 106

Query: 118 LGDVSIDSTIPHNI-KNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSL-GNLSKLLHL 175
           +    + +++P    + L  L  + L+  EL+             +P  L     KL  L
Sbjct: 107 VSFNRL-TSLPLGALRGLGELQELYLKGNELKT------------LPPGLLTPTPKLEKL 153

Query: 176 DLSLNELQGEAASFRCFGELPISM-GNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDL 234
            L+ N L           ELP  +   L +L  L L +N     +P        L    L
Sbjct: 154 SLANNNLT----------ELPAGLLNGLENLDTLLLQENS-LYTIPKGFFGSHLLPFAFL 202

Query: 235 SFNKLSGEFPW 245
             N      PW
Sbjct: 203 HGN------PW 207

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 29/136 (21%), Positives = 51/136 (37%), Gaps = 15/136 (11%)

Query: 204 SLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLS--GEFPWSTGNFSSLKLLNLRSC 261
               L LS+N  +     ++     L +L+L   +L+         G    L  L+L   
Sbjct: 32  DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD----GTLPVLGTLDLSHN 87

Query: 262 GFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITS---- 317
              S +P        L  L + FN  +   LG++  L  L+ +Y+   N   ++ +    
Sbjct: 88  QLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG-N---ELKTLPPG 142

Query: 318 SLRNLTQLVVLDMAQN 333
            L    +L  L +A N
Sbjct: 143 LLTPTPKLEKLSLANN 158

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 60.5 bits (147), Expect = 2e-10
 Identities = 56/328 (17%), Positives = 112/328 (34%), Gaps = 62/328 (18%)

Query: 58  SINSSSSLFKLVHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENL--FEKLSNLKT 115
            I    S          NL       +    E+ ++ ++       +++   + L N+  
Sbjct: 13  PIKQIFSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTK 72

Query: 116 LNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHL 175
           L L    +    P  + NL +L ++ L   +++ +             SSL +L KL  L
Sbjct: 73  LFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL-------------SSLKDLKKLKSL 117

Query: 176 DLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLS 235
            L  N +           ++   + +L  L+ L L  N       T +  L  L+ L L 
Sbjct: 118 SLEHNGIS----------DIN-GLVHLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLE 164

Query: 236 FNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSI 295
            N++S        +   L                     T+LQ L+L  N+ S   L ++
Sbjct: 165 DNQIS--------DIVPLA------------------GLTKLQNLYLSKNHISD--LRAL 196

Query: 296 GNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALD 355
             L++L+V+ +       +  +   NL     +     S    V  ++ ++   + E  +
Sbjct: 197 AGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL---VTPEI-ISDDGDYEKPN 252

Query: 356 ISLNRSSVLTKATFDATTDTTSQKIQYR 383
           +  +      + +F      T  K + R
Sbjct: 253 VKWHLPEFTNEVSFIFYQPVTIGKAKAR 280

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 60.9 bits (147), Expect = 3e-10
 Identities = 45/306 (14%), Positives = 95/306 (31%), Gaps = 59/306 (19%)

Query: 29  DCYSWDVVHCNKNTGHVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPP 88
                        +    +  L           S++  +L         L+   S+ +  
Sbjct: 312 QLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQL-----FRCELSVEKSTVLQS 366

Query: 89  EIINLSRLELQKPSFENLFEKLSNLKTLN-LGDVSIDSTIPHNIKNLSSLTFVSLRNCEL 147
           E+ +   L+  +P  EN +  L+ +  +  L  +  +         L ++    +R   L
Sbjct: 367 ELESCKELQELEP--ENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDP--MRAAYL 422

Query: 148 QAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKE 207
             + S FL++            + +  L L+  +L            +   +  L  +  
Sbjct: 423 DDLRSKFLLEN----SVLKMEYADVRVLHLAHKDL-----------TVLCHLEQLLLVTH 467

Query: 208 LDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKV 267
           LDLS N     LP ++  L  LE L  S N L            ++              
Sbjct: 468 LDLSHNRLR-ALPPALAALRCLEVLQASDNAL-----------ENVD------------- 502

Query: 268 PHSIGNFTRLQFLFLGFNNFSG-DLLGSIGNLRSLEVIYIA------KCNFSGQITSSLR 320
              + N  RLQ L L  N       +  + +   L ++ +       +     ++   L 
Sbjct: 503 --GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLP 560

Query: 321 NLTQLV 326
           +++ ++
Sbjct: 561 SVSSIL 566

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 60.0 bits (146), Expect = 5e-10
 Identities = 52/276 (18%), Positives = 93/276 (33%), Gaps = 37/276 (13%)

Query: 111 SNLKTLNLGDVSI-DSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNL 169
            ++++L++    + D+     +  L     V L +C L              I S+L   
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARC-------KDISSALRVN 55

Query: 170 SKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGE----LPTSIRN 225
             L  L+L  NEL          G   +   +   +++L L      G     L +++R 
Sbjct: 56  PALAELNLRSNELGDVGVHCVLQG---LQTPSC-KIQKLSLQNCCLTGAGCGVLSSTLRT 111

Query: 226 LFSLEKLDLSFNKL--SGEFPWSTG---NFSSLKLLNLRSCGF----WSKVPHSIGNFTR 276
           L +L++L LS N L  +G      G       L+ L L  C         +   +     
Sbjct: 112 LPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPD 171

Query: 277 LQFLFLGFNNFSGDLLGSIG-----NLRSLEVIYIAKCNFSGQ----ITSSLRNLTQLVV 327
            + L +  N+ +   +  +      +   LE + +  C  +      +   + +   L  
Sbjct: 172 FKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRE 231

Query: 328 LDMAQNSYG--GTVEL-DVLLTSWKNLEALDISLNR 360
           L +  N  G  G  EL   LL     L  L I    
Sbjct: 232 LALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECG 267

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 59.2 bits (144), Expect = 1e-09
 Identities = 70/374 (18%), Positives = 119/374 (31%), Gaps = 79/374 (21%)

Query: 91  INLSRLELQKPSFENLFEKLSNLKTLNLGDVSIDST----IPHNIKNLSSLTFVSLRNCE 146
           +++   EL    +  L   L   + + L D  +       I   ++   +L  ++LR+ E
Sbjct: 8   LDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE 67

Query: 147 L-----QAMCSFFLI-------------QISGR----IPSSLGNLSKLLHLDLSLNELQG 184
           L       +                    ++G     + S+L  L  L  L LS N L  
Sbjct: 68  LGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD 127

Query: 185 EAASFRCFGELPISMGNLGSLKELDLSQNGFFGE----LPTSIRNLFSLEKLDLSFNKLS 240
                 C G L         L++L L            L + +R     ++L +S N ++
Sbjct: 128 AGLQLLCEGLLDPQC----RLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 183

Query: 241 GE-----FPWSTGNFSSLKLLNLRSCGF----WSKVPHSIGNFTRLQFLFLGFNNFSGDL 291
                        +   L+ L L SCG        +   + +   L+ L LG N      
Sbjct: 184 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 243

Query: 292 LGSIGN-----LRSLEVIYIAKCNFSGQ----ITSSLRNLTQLVVLDMAQNSYG--GTVE 340
           +  +          L  ++I +C  + +    +   LR    L  L +A N  G  G   
Sbjct: 244 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL 303

Query: 341 L-DVLLTSWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLTKFPNFLEN 399
           L + LL     LE+L +        T A                   S         L  
Sbjct: 304 LCETLLEPGCQLESLWVKSCS---FTAACCSH-------------FSSV--------LAQ 339

Query: 400 QNHLVILNLSDNRI 413
              L+ L +S+NR+
Sbjct: 340 NRFLLELQISNNRL 353

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 56.5 bits (137), Expect = 6e-09
 Identities = 73/397 (18%), Positives = 120/397 (30%), Gaps = 80/397 (20%)

Query: 62  SSSLFKLVHLKWLNLALNDFNSSEIPP------------EIINLSRLELQKPSFENLFEK 109
           SS+L     L  LNL  N+     +              + ++L    L       L   
Sbjct: 49  SSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSST 108

Query: 110 LSNLKTL--------NLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGR 161
           L  L TL         LGD  +       +     L  + L  C L A     L      
Sbjct: 109 LRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA----- 163

Query: 162 IPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGF----FG 217
             S L        L +S N++       R   +      +   L+ L L   G       
Sbjct: 164 --SVLRAKPDFKELTVSNNDINEAGV--RVLCQGLKD--SPCQLEALKLESCGVTSDNCR 217

Query: 218 ELPTSIRNLFSLEKLDLSFNKLSGE-----FPWSTGNFSSLKLLNLRSCGF----WSKVP 268
           +L   + +  SL +L L  NKL         P      S L+ L +  CG        + 
Sbjct: 218 DLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLC 277

Query: 269 HSIGNFTRLQFLFLGFNNFSGDLLGSIGNL-----RSLEVIYIAKCNFSGQ----ITSSL 319
             +     L+ L L  N    +    +          LE +++  C+F+       +S L
Sbjct: 278 RVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVL 337

Query: 320 RNLTQLVVLDMAQNSYG--GTVEL-DVLLTSWKNLEALDISLNRSSVLTKATFDATTDTT 376
                L+ L ++ N     G  EL   L      L  L ++      ++ ++  +     
Sbjct: 338 AQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD---VSDSSCSSLAA-- 392

Query: 377 SQKIQYRGLRSCNLTKFPNFLENQNHLVILNLSDNRI 413
                   L + +             L  L+LS+N +
Sbjct: 393 -------TLLANH------------SLRELDLSNNCL 410

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 47.6 bits (114), Expect = 5e-06
 Identities = 62/326 (19%), Positives = 106/326 (32%), Gaps = 55/326 (16%)

Query: 47  KLNLSHGCL--FGSINSSSSLFKLVHLKWLNLALNDFNSSEIPP------------EIIN 92
           KL L +  L        +S L      K L ++ ND N + +              E + 
Sbjct: 146 KLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALK 205

Query: 93  LSRLELQKPSFENLFEKLSNLKTL--------NLGDVSIDSTIPHNIKNLSSLTFVSLRN 144
           L    +   +  +L   +++  +L         LGDV +    P  +   S L  + +  
Sbjct: 206 LESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWE 265

Query: 145 CELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGS 204
           C + A     L          L     L  L L+ NEL  E A   C     +       
Sbjct: 266 CGITAKGCGDLC-------RVLRAKESLKELSLAGNELGDEGARLLCET---LLEPGC-Q 314

Query: 205 LKELDLSQNGF----FGELPTSIRNLFSLEKLDLSFNKL--SGEFPWSTG---NFSSLKL 255
           L+ L +    F         + +     L +L +S N+L  +G      G     S L++
Sbjct: 315 LESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRV 374

Query: 256 LNLRSCGFWSKVPHSIG----NFTRLQFLFLGFNNFSGD----LLGSIGNLRS-LEVIYI 306
           L L  C        S+         L+ L L  N         L+ S+      LE + +
Sbjct: 375 LWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVL 434

Query: 307 AKCNFSGQ----ITSSLRNLTQLVVL 328
               +S +    + +  ++   L V+
Sbjct: 435 YDIYWSEEMEDRLQALEKDKPSLRVI 460

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 59.5 bits (144), Expect = 6e-10
 Identities = 36/188 (19%), Positives = 61/188 (32%), Gaps = 39/188 (20%)

Query: 84  SEIPPEI--INLSRLELQKPSFENLFEKLSNLKTLNLGDVSIDSTIPHNI-KNLSSLTFV 140
             +P     ++LS   L +   E    +L+NL +L L    + + I       + +L ++
Sbjct: 35  QSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHL-NFISSEAFVPVPNLRYL 93

Query: 141 SLRNCELQAMCSFFLIQISGRIPS-SLGNLSKLLHLDLSLNELQG-EAASFRCFGELPIS 198
            L +  L              +      +L  L  L L  N +   +  +F         
Sbjct: 94  DLSSNHLH------------TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFE-------- 133

Query: 199 MGNLGSLKELDLSQN-------GFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFS 251
             ++  L++L LSQN           +       L  L  LDLS NKL            
Sbjct: 134 --DMAQLQKLYLSQNQISRFPVELIKDGN----KLPKLMLLDLSSNKLKKLPLTDLQKLP 187

Query: 252 SLKLLNLR 259
           +     L 
Sbjct: 188 AWVKNGLY 195

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 58.3 bits (141), Expect = 1e-09
 Identities = 38/184 (20%), Positives = 62/184 (33%), Gaps = 32/184 (17%)

Query: 111 SNLKTLNLGDVSIDSTIPHNI-KNLSSLTFVSLRNCELQAMCSFFLIQISGRIPS-SLGN 168
           S    L+L   ++           L++L  + L +  L              I S +   
Sbjct: 39  SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN------------FISSEAFVP 86

Query: 169 LSKLLHLDLSLNELQG-EAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSI-RNL 226
           +  L +LDLS N L   +   F           +L +L+ L L  N     +  +   ++
Sbjct: 87  VPNLRYLDLSSNHLHTLDEFLFS----------DLQALEVLLLYNNH-IVVVDRNAFEDM 135

Query: 227 FSLEKLDLSFNKLSGEFPWST----GNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFL 282
             L+KL LS N++S  FP            L LL+L S          +          L
Sbjct: 136 AQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGL 194

Query: 283 GFNN 286
             +N
Sbjct: 195 YLHN 198

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 46.4 bits (110), Expect = 9e-06
 Identities = 34/162 (20%), Positives = 58/162 (35%), Gaps = 19/162 (11%)

Query: 175 LDLSLNELQ--GEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSI-RNLFSLEK 231
           LDLS N L       +             L +L  L LS N     + +     + +L  
Sbjct: 44  LDLSHNNLSRLRAEWTPT----------RLTNLHSLLLSHNHL-NFISSEAFVPVPNLRY 92

Query: 232 LDLSFNKLSGEFPWST-GNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNN---F 287
           LDLS N L          +  +L++L L +        ++  +  +LQ L+L  N    F
Sbjct: 93  LDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRF 151

Query: 288 SGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLD 329
             +L+     L  L ++ ++         + L+ L   V   
Sbjct: 152 PVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNG 193

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 58.1 bits (141), Expect = 9e-10
 Identities = 52/236 (22%), Positives = 83/236 (35%), Gaps = 56/236 (23%)

Query: 61  SSSSLFKLVHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENLFEKLSNLKTLNLGD 120
            S S F    L+ L+L+               +  +E      +  ++ LS+L TL L  
Sbjct: 44  GSYSFFSFPELQVLDLSRC------------EIQTIE------DGAYQSLSHLSTLILTG 85

Query: 121 VSIDSTIPHNI-KNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSL-GNLSKLLHLDLS 178
             I  ++       LSSL  +      L              + +   G+L  L  L+++
Sbjct: 86  NPI-QSLALGAFSGLSSLQKLVAVETNLA------------SLENFPIGHLKTLKELNVA 132

Query: 179 LNELQ--GEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSI-RNLFSLE----K 231
            N +Q       F           NL +L+ LDLS N     +  +  R L  +      
Sbjct: 133 HNLIQSFKLPEYFS----------NLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLS 181

Query: 232 LDLSFNKLSGEFPWSTGNFSSLKL--LNLRSCGFWSKVPHSIGNFTRLQFLFLGFN 285
           LDLS N ++       G F  ++L  L L +    S         T LQ ++L  N
Sbjct: 182 LDLSLNPMN-FIQ--PGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 48.4 bits (116), Expect = 2e-06
 Identities = 46/236 (19%), Positives = 85/236 (36%), Gaps = 42/236 (17%)

Query: 111 SNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSL-GNL 169
            + K L+L    +     ++  +   L  + L  CE+Q             I      +L
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT------------IEDGAYQSL 75

Query: 170 SKLLHLDLSLNELQGEAASFRCFGELPISM-GNLGSLKELDLSQNGFFGELPTSIRNLFS 228
           S L  L L+ N +Q           L +     L SL++L   +          I +L +
Sbjct: 76  SHLSTLILTGNPIQ----------SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 125

Query: 229 LEKLDLSFNKLSGEFPWSTGNFSS---LKLLNLRSCGFWSKVPHSIGNFTRLQF----LF 281
           L++L+++ N +   F      FS+   L+ L+L S    S     +    ++      L 
Sbjct: 126 LKELNVAHNLIQ-SFK-LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD 183

Query: 282 LGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITS----SLRNLTQLVVLDMAQN 333
           L  N  +    G+   +R L+ + +     + Q+ S        LT L  + +  N
Sbjct: 184 LSLNPMNFIQPGAFKEIR-LKELAL----DTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 44.2 bits (105), Expect = 3e-05
 Identities = 42/186 (22%), Positives = 73/186 (39%), Gaps = 2/186 (1%)

Query: 228 SLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNF 287
           S + LDLSFN L     +S  +F  L++L+L  C   +    +  + + L  L L  N  
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88

Query: 288 SGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTS 347
               LG+   L SL+ +   + N +      + +L  L  L++A N    + +L    ++
Sbjct: 89  QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ-SFKLPEYFSN 147

Query: 348 WKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLTKFPNFLENQNHLVILN 407
             NLE LD+S N+   +               +    L    +         +  L  L 
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD-LSLNPMNFIQPGAFKEIRLKELA 206

Query: 408 LSDNRI 413
           L  N++
Sbjct: 207 LDTNQL 212

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 58.2 bits (141), Expect = 2e-09
 Identities = 53/330 (16%), Positives = 108/330 (32%), Gaps = 49/330 (14%)

Query: 113 LKTLNLGDVSIDS----TIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGN 168
           ++  +L   +I +    ++   +    S+  + L    +    + +L         ++ +
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLS-------ENIAS 58

Query: 169 LSKLLHLDLSLNEL-QGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGE----LPTSI 223
              L   + S     + +         L  ++     L  + LS N F       L   +
Sbjct: 59  KKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFL 118

Query: 224 RNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLL--NLRSCGFWSKVPHSIGNFTRLQFLF 281
                LE L L  N L  +         +   +   L+      K  ++      L+ + 
Sbjct: 119 SKHTPLEHLYLHNNGLGPQ---------AGAKIARALQELAVNKKAKNA----PPLRSII 165

Query: 282 LGFNNFSGD----LLGSIGNLRSLEVIYIAKCNFSGQ-----ITSSLRNLTQLVVLDMAQ 332
            G N            +  + R L  + + +     +     +   L    +L VLD+  
Sbjct: 166 CGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQD 225

Query: 333 NSYG--GTVELDVLLTSWKNLEALDISLNR-SSVLTKATFDATTDTTSQKIQYRGLRSCN 389
           N++   G+  L + L SW NL  L ++    S+    A  DA +   +  +Q   L+   
Sbjct: 226 NTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE 285

Query: 390 LTK-----FPNFL-ENQNHLVILNLSDNRI 413
           +           + E    L+ L L+ NR 
Sbjct: 286 IELDAVRTLKTVIDEKMPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 52.0 bits (125), Expect = 1e-07
 Identities = 46/279 (16%), Positives = 83/279 (29%), Gaps = 54/279 (19%)

Query: 166 LGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGE----LPT 221
           +   S +    L L+ +  E         +   +    S+KE+ LS N    E    L  
Sbjct: 1   MARFS-IEGKSLKLDAITTEDEK-----SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSE 54

Query: 222 SIRNLFSLEKLDLSFN---KLSGEFPWSTGNFS-------SLKLLNLRSCGFWSKVPHSI 271
           +I +   LE  + S     ++  E P +             L  + L    F       +
Sbjct: 55  NIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPL 114

Query: 272 GNF----TRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVV 327
            +F    T L+ L+L  N      LG            IA+      +    +N   L  
Sbjct: 115 IDFLSKHTPLEHLYLHNNG-----LGPQA------GAKIARALQELAVNKKAKNAPPLRS 163

Query: 328 LDMAQNSYG--GTVELDVLLTSWKNLEALDISLNR------SSVLTKATFDATTDTTSQK 379
           +   +N        E      S + L  + +  N         +L +             
Sbjct: 164 IICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQE------ 217

Query: 380 IQYRGLRSCNLTK-----FPNFLENQNHLVILNLSDNRI 413
           ++   L+    T          L++  +L  L L+D  +
Sbjct: 218 LKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLL 256

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 42/288 (14%), Positives = 79/288 (27%), Gaps = 65/288 (22%)

Query: 108 EKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLG 167
               +L+     D+          + L  L                           +L 
Sbjct: 57  ASKKDLEIAEFSDIFTGRVKDEIPEALRLLL-------------------------QALL 91

Query: 168 NLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGF------------ 215
              KL  + LS N     A       +    +     L+ L L  NG             
Sbjct: 92  KCPKLHTVRLSDNAFGPTAQ--EPLIDF---LSKHTPLEHLYLHNNGLGPQAGAKIARAL 146

Query: 216 -FGELPTSIRNLFSLEKLDLSFNKLSGE--FPWSTG--NFSSLKLLNLRSCGFWSK---- 266
               +    +N   L  +    N+L       W+    +   L  + +   G   +    
Sbjct: 147 QELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEH 206

Query: 267 -VPHSIGNFTRLQFLFLGFNNFSGD----LLGSIGNLRSLEVIYIAKCNFSGQ----ITS 317
            +   +     L+ L L  N F+      L  ++ +  +L  + +  C  S +    +  
Sbjct: 207 LLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVD 266

Query: 318 SLRNL--TQLVVLDMAQNSYG--GTVEL-DVLLTSWKNLEALDISLNR 360
           +   L    L  L +  N         L  V+     +L  L+++ NR
Sbjct: 267 AFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR 314

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 58.4 bits (141), Expect = 2e-09
 Identities = 47/311 (15%), Positives = 95/311 (30%), Gaps = 26/311 (8%)

Query: 29  DCYSWDVVHCNKNTGHVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPP 88
           +CY+       +    V  + L     F   N     +      W+    + +       
Sbjct: 52  NCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTW----L 107

Query: 89  EIINLSRLELQKPSFENLFEKLSNLKTLNLGDVSI--DSTIPHNIKNLSSLTFVSLRNCE 146
           E I L R+ +     E + +   N K L L          +        +L  + LR  +
Sbjct: 108 EEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD 167

Query: 147 LQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLK 206
           +  +   +L              + L+ L++S    +   ++               +LK
Sbjct: 168 VDDVSGHWLSHFP-------DTYTSLVSLNISCLASEVSFSALERLVT------RCPNLK 214

Query: 207 ELDLSQNGFFGELPTSIRNLFSLEKLDL-SFNKLSGEFPWSTGNFSSLKLLNLRSC-GFW 264
            L L++     +L T ++    LE+L    +        +S  + +      LR   GFW
Sbjct: 215 SLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFW 274

Query: 265 SK----VPHSIGNFTRLQFLFLGFNNFSGD-LLGSIGNLRSLEVIYIAKCNFSGQITSSL 319
                 +P      +RL  L L +       L+  +     L+ +++        +    
Sbjct: 275 DAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLA 334

Query: 320 RNLTQLVVLDM 330
                L  L +
Sbjct: 335 STCKDLRELRV 345

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 49.5 bits (118), Expect = 1e-06
 Identities = 35/251 (13%), Positives = 79/251 (31%), Gaps = 5/251 (1%)

Query: 89  EIINLSRLELQKPSFENLFEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQ 148
             +NLS   +Q      L  +   L+ L + D   D+ +         L  + +   E  
Sbjct: 292 TTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPF 351

Query: 149 AMCSFFLIQISG--RIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLK 206
            M     +   G   +      L  +L+    +        +          +  +    
Sbjct: 352 VMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKA 411

Query: 207 ELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSK 266
              L+           + +   L +L LS       F +       +++L++   G    
Sbjct: 412 PDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDL 471

Query: 267 -VPHSIGNFTRLQFLFLGFNNFSGD-LLGSIGNLRSLEVIYIAKCNFSGQITSSL-RNLT 323
            + H +     L+ L +    F    LL +   L ++  ++++ C+ S      L + + 
Sbjct: 472 GMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMP 531

Query: 324 QLVVLDMAQNS 334
           +L V  + +  
Sbjct: 532 KLNVEVIDERG 542

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 45.7 bits (108), Expect = 2e-05
 Identities = 38/276 (13%), Positives = 86/276 (31%), Gaps = 37/276 (13%)

Query: 102 SFENLFEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGR 161
                      L+ L+    ++ + +P      S LT ++L    +Q+     L+     
Sbjct: 256 GLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLC---- 311

Query: 162 IPSSLGNLSKLLHLDL----SLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFG 217
                    KL  L +        L+  A++ +   EL      +   +   +  N    
Sbjct: 312 ------QCPKLQRLWVLDYIEDAGLEVLASTCKDLREL-----RVFPSEPFVMEPNVALT 360

Query: 218 E--LPTSIRNLFSLEKLDLSFNKLSGE-FPWSTGNFSSLKLLNLRSCGFWSKVPHSIG-- 272
           E  L +       LE +     +++         N  ++    L      +    ++   
Sbjct: 361 EQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPL 420

Query: 273 ---------NFTRLQFLFLGFNNFSGDLLGSIG-NLRSLEVIYIAKCNFSGQ-ITSSLRN 321
                    +   L+ L L     +  +   IG   + +E++ +A    S   +   L  
Sbjct: 421 DIGFGAIVEHCKDLRRLSLS-GLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSG 479

Query: 322 LTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDIS 357
              L  L++ ++   G   L    +  + + +L +S
Sbjct: 480 CDSLRKLEI-RDCPFGDKALLANASKLETMRSLWMS 514

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 41.0 bits (96), Expect = 7e-04
 Identities = 35/281 (12%), Positives = 75/281 (26%), Gaps = 45/281 (16%)

Query: 92  NLSRLELQKPSFENLFEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMC 151
            +        S   +  +   ++++ L             K        +L         
Sbjct: 47  KVFIGNCYAVSPATVIRRFPKVRSVEL-------------KGKPHFADFNLVPDGWGGYV 93

Query: 152 SFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLS 211
             ++  +S            L  + L    +           +      +  + K L LS
Sbjct: 94  YPWIEAMSSSYTW-------LEEIRLKRMVV--TDDCLELIAK------SFKNFKVLVLS 138

Query: 212 QNGFFGE--LPTSIRNLFSLEKLDLSFNKLSGEFPWS----TGNFSSLKLLNLRSCGFW- 264
               F    L        +L++LDL  + +              ++SL  LN+       
Sbjct: 139 SCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEV 198

Query: 265 --SKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQ------IT 316
             S +   +     L+ L L        L   +     LE +         +      ++
Sbjct: 199 SFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLS 258

Query: 317 SSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDIS 357
            +L    +L  L    ++      L  + +    L  L++S
Sbjct: 259 VALSGCKELRCLSGFWDA--VPAYLPAVYSVCSRLTTLNLS 297

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 55.2 bits (133), Expect = 1e-08
 Identities = 40/263 (15%), Positives = 79/263 (30%), Gaps = 39/263 (14%)

Query: 84  SEIPPEI-INLSRLELQKPSFENL----FEKLSNLKTLNLGDVSIDSTIPHNI-KNLSSL 137
           +EIP ++  N   L         +    F    +L+ + +    +   I  ++  NL  L
Sbjct: 22  TEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKL 81

Query: 138 TFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELP- 196
             + +               +    P +  NL  L +L +S   ++           LP 
Sbjct: 82  HEIRIEKA----------NNLLYINPEAFQNLPNLQYLLISNTGIK----------HLPD 121

Query: 197 ISMGNLGSLKELDLSQNGFFGELPT-SIRNL-FSLEKLDLSFNKLSGEFPWSTGNFSSLK 254
           +   +      LD+  N     +   S   L F    L L+ N +          F+  +
Sbjct: 122 VHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI---HNSAFNGTQ 178

Query: 255 LLNLRSCGF--WSKVP-HSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNF 311
           L  L         ++P       +    L +            + NL+ L         +
Sbjct: 179 LDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARS----TY 234

Query: 312 SGQITSSLRNLTQLVVLDMAQNS 334
           + +   +L  L  L+   +   S
Sbjct: 235 NLKKLPTLEKLVALMEASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 50.2 bits (120), Expect = 5e-07
 Identities = 53/257 (20%), Positives = 94/257 (36%), Gaps = 27/257 (10%)

Query: 161 RIPSSLGNLSKLLHLDLSLNELQG-EAASFRCFGELPISMGNLGSLKELDLSQNGFFGEL 219
            IPS L      + L   L +L+  +  +F             G L+++++SQN     +
Sbjct: 23  EIPSDL--PRNAIELRFVLTKLRVIQKGAFS----------GFGDLEKIEISQNDVLEVI 70

Query: 220 PTSI-RNLFSLEKLDLS-FNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRL 277
              +  NL  L ++ +   N L    P +  N  +L+ L + + G          +  + 
Sbjct: 71  EADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQK 130

Query: 278 QFLFLGFNNFSGDL-LGSIGNLRS-LEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSY 335
             L +  N     +   S   L     ++++ K     +I +S  N TQL  L+++ N+ 
Sbjct: 131 VLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNN 189

Query: 336 GGTVELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLTKFPN 395
              +  DV          LDIS  R   L     +        K++ R     NL K P 
Sbjct: 190 LEELPNDVF-HGASGPVILDISRTRIHSLPSYGLENLK-----KLRARSTY--NLKKLPT 241

Query: 396 FLENQNHLVILNLSDNR 412
             E    L+  +L+   
Sbjct: 242 L-EKLVALMEASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 44.0 bits (104), Expect = 4e-05
 Identities = 39/217 (17%), Positives = 77/217 (35%), Gaps = 19/217 (8%)

Query: 204 SLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLS----GEFPWSTGNFSSLKLLNLR 259
           S +     ++    E+P+ +    +  +L     KL     G F      F  L+ + + 
Sbjct: 10  SNRVFLCQESKV-TEIPSDL--PRNAIELRFVLTKLRVIQKGAF----SGFGDLEKIEIS 62

Query: 260 SCGFWSKVP-HSIGNFTRLQFLFL-GFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITS 317
                  +      N  +L  + +   NN       +  NL +L+ + I+          
Sbjct: 63  QNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDV 122

Query: 318 SLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDTTS 377
              +  Q V+LD+  N    T+E +  +        L ++ N    +  + F+ T     
Sbjct: 123 HKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGT----- 177

Query: 378 QKIQYRGLRSCNLTKFP-NFLENQNHLVILNLSDNRI 413
           Q  +     + NL + P +     +  VIL++S  RI
Sbjct: 178 QLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRI 214

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 53.8 bits (130), Expect = 2e-08
 Identities = 48/197 (24%), Positives = 76/197 (38%), Gaps = 44/197 (22%)

Query: 67  KLVHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENLFEKLSNLKTLNLGDVSIDST 126
           +L  L+ L L  N   +  +P                  +F++L NL+TL + D  +   
Sbjct: 59  RLTKLRLLYLNDNKLQT--LPA----------------GIFKELKNLETLWVTDNKL-QA 99

Query: 127 IPHNI-KNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQG- 184
           +P  +   L +L  + L   +L++        +  R+  SL  L+   +L L  NELQ  
Sbjct: 100 LPIGVFDQLVNLAELRLDRNQLKS--------LPPRVFDSLTKLT---YLSLGYNELQSL 148

Query: 185 EAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSI-RNLFSLEKLDLSFNKLSGEF 243
               F            L SLKEL L  N     +P      L  L+ L L  N+L    
Sbjct: 149 PKGVFD----------KLTSLKELRLYNN-QLKRVPEGAFDKLTELKTLKLDNNQLKRVP 197

Query: 244 PWSTGNFSSLKLLNLRS 260
             +  +   LK+L L+ 
Sbjct: 198 EGAFDSLEKLKMLQLQE 214

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 46.9 bits (112), Expect = 4e-06
 Identities = 49/203 (24%), Positives = 81/203 (39%), Gaps = 36/203 (17%)

Query: 111 SNLKTLNLGDVSIDSTIPHNI-KNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSL-GN 168
           ++ K L+L    + S++P      L+ L  + L + +LQ             +P+ +   
Sbjct: 37  ADTKKLDLQSNKL-SSLPSKAFHRLTKLRLLYLNDNKLQT------------LPAGIFKE 83

Query: 169 LSKLLHLDLSLNELQGEAASFRCFGELPISM-GNLGSLKELDLSQNGFFGELPTSI-RNL 226
           L  L  L ++ N+LQ           LPI +   L +L EL L +N     LP  +  +L
Sbjct: 84  LKNLETLWVTDNKLQ----------ALPIGVFDQLVNLAELRLDRNQ-LKSLPPRVFDSL 132

Query: 227 FSLEKLDLSFNKL----SGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFL 282
             L  L L +N+L     G F       +SLK L L +         +    T L+ L L
Sbjct: 133 TKLTYLSLGYNELQSLPKGVF----DKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKL 188

Query: 283 GFNNFSGDLLGSIGNLRSLEVIY 305
             N       G+  +L  L+++ 
Sbjct: 189 DNNQLKRVPEGAFDSLEKLKMLQ 211

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 43.8 bits (104), Expect = 5e-05
 Identities = 41/184 (22%), Positives = 72/184 (39%), Gaps = 23/184 (12%)

Query: 157 QISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISM-GNLGSLKELDLSQNGF 215
           ++S     +   L+KL  L L+ N+LQ           LP  +   L +L+ L ++ N  
Sbjct: 48  KLSSLPSKAFHRLTKLRLLYLNDNKLQ----------TLPAGIFKELKNLETLWVTDNK- 96

Query: 216 FGELPTSI-RNLFSLEKLDLSFNKLS----GEFPWSTGNFSSLKLLNLRSCGFWSKVPHS 270
              LP  +   L +L +L L  N+L       F     + + L  L+L      S +P  
Sbjct: 97  LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFD----SLTKLTYLSLGYNELQS-LPKG 151

Query: 271 I-GNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLD 329
           +    T L+ L L  N       G+   L  L+ + +           +  +L +L +L 
Sbjct: 152 VFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQ 211

Query: 330 MAQN 333
           + +N
Sbjct: 212 LQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 43.4 bits (103), Expect = 6e-05
 Identities = 37/157 (23%), Positives = 67/157 (42%), Gaps = 34/157 (21%)

Query: 67  KLVHLKWLNLALNDFNSSEIPPEI----INLSRLELQKPSFENL----FEKLSNLKTLNL 118
           +L +L+ L +  N   +  +P  +    +NL+ L L +   ++L    F+ L+ L  L+L
Sbjct: 83  ELKNLETLWVTDNKLQA--LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSL 140

Query: 119 GDVSIDSTIPHNI-KNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSL-GNLSKLLHLD 176
           G   + S +P  +   L+SL  + L N +L+             +P      L++L  L 
Sbjct: 141 GYNELQS-LPKGVFDKLTSLKELRLYNNQLKR------------VPEGAFDKLTELKTLK 187

Query: 177 LSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQN 213
           L  N+L+              +  +L  LK L L +N
Sbjct: 188 LDNNQLKRVPEG---------AFDSLEKLKMLQLQEN 215

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 52.3 bits (126), Expect = 6e-08
 Identities = 37/259 (14%), Positives = 78/259 (30%), Gaps = 59/259 (22%)

Query: 29  DCYSWDVVHCNKNTGHVI--------KLNLSHGCLFGSINSSSSLFKLVHLKWLNLALND 80
           +C+  +           I         L L       +I  S +   L ++  + ++++ 
Sbjct: 9   ECHQEEDFRVTCKDIQRIPSLPPSTQTLKLIE-THLRTI-PSHAFSNLPNISRIYVSIDV 66

Query: 81  FNSSEIPPEIINLSRLELQKPSFENLFEKLSNLKTLNLGDVSIDSTIPHNI-KNLSSLTF 139
                       L +LE       + F  LS +  + + +    + I  +  K L  L F
Sbjct: 67  -----------TLQQLE------SHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF 109

Query: 140 VSLRNCELQAMCSFFLI---------------QISGRIPSSLGNLSKLL-HLDLSLNELQ 183
           + + N  L+       +                ++    ++   L      L L  N   
Sbjct: 110 LGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT 169

Query: 184 GEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSI-RNLFS-LEKLDLSFNKLSG 241
                      +     N   L  + L++N +   +       ++S    LD+S   ++ 
Sbjct: 170 ----------SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT- 218

Query: 242 EFPWSTGNFSSLKLLNLRS 260
             P  +     LK L  R+
Sbjct: 219 ALP--SKGLEHLKELIARN 235

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 47.3 bits (113), Expect = 3e-06
 Identities = 33/217 (15%), Positives = 73/217 (33%), Gaps = 22/217 (10%)

Query: 161 RIPSSLGNLSKLLHLDLSLNELQG-EAASFRCFGELPISMGNLGSLKELDLSQNGFFGEL 219
           RIPS   +      L L    L+   + +F           NL ++  + +S +    +L
Sbjct: 25  RIPSLPPSTQ---TLKLIETHLRTIPSHAFS----------NLPNISRIYVSIDVTLQQL 71

Query: 220 PTSI-RNLFSLEKLDLSFNKLSGEFPWST-GNFSSLKLLNLRSCGFWSKVPH--SIGNFT 275
            +    NL  +  +++   +               LK L + + G     P    + +  
Sbjct: 72  ESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGL-KMFPDLTKVYSTD 130

Query: 276 RLQFLFLGFNNFSGDL-LGSIGNLRS-LEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQN 333
               L +  N +   + + +   L +    + +    F+  +     N T+L  + + +N
Sbjct: 131 IFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKN 189

Query: 334 SYGGTVELDVLLTSWKNLEALDISLNRSSVLTKATFD 370
            Y   ++ D     +     LD+S    + L     +
Sbjct: 190 KYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLE 226

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 44.2 bits (105), Expect = 3e-05
 Identities = 25/192 (13%), Positives = 63/192 (32%), Gaps = 12/192 (6%)

Query: 228 SLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVP-HSIGNFTRLQFLFLGFNN 286
           S + L L    L      +  N  ++  + +       ++  HS  N +++  + +    
Sbjct: 32  STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91

Query: 287 FSGDL-LGSIGNLRSLEVIYIAKCNFSG-QITSSLRNLTQLVVLDMAQNSYGGTVELDVL 344
               +   ++  L  L+ + I           + + +     +L++  N Y  ++ ++  
Sbjct: 92  NLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAF 151

Query: 345 LTSWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCN-LTKFPN--FLENQN 401
                    L +  N  + +    F+ T      K+    L     LT      F    +
Sbjct: 152 QGLCNETLTLKLYNNGFTSVQGYAFNGT------KLDAVYLNKNKYLTVIDKDAFGGVYS 205

Query: 402 HLVILNLSDNRI 413
              +L++S   +
Sbjct: 206 GPSLLDVSQTSV 217

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 50.4 bits (121), Expect = 3e-07
 Identities = 42/217 (19%), Positives = 74/217 (34%), Gaps = 38/217 (17%)

Query: 44  HVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSF 103
           + +K NL       S+    S  +L  ++  N   ++  S        NL  L L     
Sbjct: 20  NAVKQNLGKQ----SVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQI 75

Query: 104 ENL--FEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGR 161
            +L   + L+ L+ L++          + +KNL+ +    L    L         ++   
Sbjct: 76  SDLSPLKDLTKLEELSVNR--------NRLKNLNGIPSACLSRLFLDN------NELRD- 120

Query: 162 IPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPT 221
              SL +L  L  L +  N+L+           +   +G L  L+ LDL  N        
Sbjct: 121 -TDSLIHLKNLEILSIRNNKLK----------SIV-MLGFLSKLEVLDLHGNEI--TNTG 166

Query: 222 SIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNL 258
            +  L  +  +DL+  K   E          L + N 
Sbjct: 167 GLTRLKKVNWIDLTGQKCVNE---PVKYQPELYITNT 200

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 49.6 bits (119), Expect = 5e-07
 Identities = 38/206 (18%), Positives = 74/206 (35%), Gaps = 39/206 (18%)

Query: 130 NIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASF 189
               L++    +L    +  +              S   LS + + +   + +Q      
Sbjct: 14  PDPGLANAVKQNLGKQSVTDL-------------VSQKELSGVQNFNGDNSNIQ------ 54

Query: 190 RCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGN 249
                L   M    +LKEL LS N       + +++L  LE+L ++ N+L      +   
Sbjct: 55  ----SLA-GMQFFTNLKELHLSHNQI--SDLSPLKDLTKLEELSVNRNRLKN---LNGIP 104

Query: 250 FSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKC 309
            + L  L L +     +   S+ +   L+ L +  N      +  +G L  LEV+ +   
Sbjct: 105 SACLSRLFLDNNEL--RDTDSLIHLKNLEILSIRNNKLKS--IVMLGFLSKLEVLDLHGN 160

Query: 310 NFSGQIT--SSLRNLTQLVVLDMAQN 333
               +IT    L  L ++  +D+   
Sbjct: 161 ----EITNTGGLTRLKKVNWIDLTGQ 182

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 34/199 (17%), Positives = 75/199 (37%), Gaps = 30/199 (15%)

Query: 164 SSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSI 223
                L+  +  +L    +              +S   L  ++  +   +    +    +
Sbjct: 13  FPDPGLANAVKQNLGKQSVTDL-----------VSQKELSGVQNFNGDNSNI--QSLAGM 59

Query: 224 RNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLG 283
           +   +L++L LS N++S   P    + + L+ L++      +    +      L  LFL 
Sbjct: 60  QFFTNLKELHLSHNQISDLSPLK--DLTKLEELSVNRNRLKNL---NGIPSACLSRLFLD 114

Query: 284 FNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQIT--SSLRNLTQLVVLDMAQNSYGGTVEL 341
            N        S+ +L++LE++ I       ++     L  L++L VLD+  N     +  
Sbjct: 115 NNELRD--TDSLIHLKNLEILSIRNN----KLKSIVMLGFLSKLEVLDLHGNE----ITN 164

Query: 342 DVLLTSWKNLEALDISLNR 360
              LT  K +  +D++  +
Sbjct: 165 TGGLTRLKKVNWIDLTGQK 183

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 33/213 (15%), Positives = 67/213 (31%), Gaps = 45/213 (21%)

Query: 201 NLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRS 260
            L +  + +L +         S + L  ++  +   + +          F++LK L+L  
Sbjct: 17  GLANAVKQNLGKQSV--TDLVSQKELSGVQNFNGDNSNIQSLAGMQ--FFTNLKELHLSH 72

Query: 261 CGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLR 320
               S +   + + T+L+ L +  N    +L  +      L  +++         T SL 
Sbjct: 73  NQI-SDLS-PLKDLTKLEELSVNRNRLK-NL--NGIPSACLSRLFLDNNELRD--TDSLI 125

Query: 321 NLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDTTSQKI 380
           +L  L +L +  N     V L  L      LE LD+  N  +                  
Sbjct: 126 HLKNLEILSIRNNKLKSIVMLGFL----SKLEVLDLHGNEITNTG--------------- 166

Query: 381 QYRGLRSCNLTKFPNFLENQNHLVILNLSDNRI 413
                           L     +  ++L+  + 
Sbjct: 167 ---------------GLTRLKKVNWIDLTGQKC 184

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 50.1 bits (120), Expect = 5e-07
 Identities = 55/325 (16%), Positives = 103/325 (31%), Gaps = 72/325 (22%)

Query: 111 SNLKTLNLGDVSIDSTIPHNI-----KNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSS 165
             + +L+L   ++ S     +        +S+T ++L    L    S  L+QI   IP++
Sbjct: 22  HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81

Query: 166 LGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGE----LPT 221
           +        L+LS N L  +++                ++  LDL  N F  +       
Sbjct: 82  V------TSLNLSGNFLSYKSSDELVKT----LAAIPFTITVLDLGWNDFSSKSSSEFKQ 131

Query: 222 SIRNLF-SLEKLDLSFNKLSGEFPWS-----TGNFSSLKLLNLRSCGFWSKVPHSIGNF- 274
           +  NL  S+  L+L  N L  +             +++  LNLR     SK    +  F 
Sbjct: 132 AFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFL 191

Query: 275 ----TRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDM 330
                 +  L L  N      LG            +A                 +V L++
Sbjct: 192 ASIPASVTSLDLSANL-----LGLKS------YAELAYI--------FSSIPNHVVSLNL 232

Query: 331 AQNSYG--GTVELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSC 388
             N         L +L  S K+L+ + +  +    ++K    A                 
Sbjct: 233 CLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKA----------------- 275

Query: 389 NLTKFPNFLENQNHLVILNLSDNRI 413
                     N   +++++ +   I
Sbjct: 276 ----LGAAFPNIQKIILVDKNGKEI 296

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 50.7 bits (121), Expect = 6e-07
 Identities = 42/308 (13%), Positives = 93/308 (30%), Gaps = 29/308 (9%)

Query: 49  NLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPPEI---------INLSRLELQ 99
               G L   I        LV  + L      +      P +         ++L    L+
Sbjct: 247 EFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLE 306

Query: 100 KPSFENLFEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQIS 159
                 L +K  NL+ L   +V  D  +    +    L  + +     +         +S
Sbjct: 307 TEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVS 366

Query: 160 GRIPSSLG-NLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGE 218
            R   +L     +L ++ + ++++  E+        +   + NL   + + L +     +
Sbjct: 367 QRGLIALAQGCQELEYMAVYVSDITNES-----LESIGTYLKNLCDFRLVLLDREERITD 421

Query: 219 LPTS------IRNLFSLEKLDLSFN--KLSGEFPWSTG-NFSSLKLLNLRSCGFWSK-VP 268
           LP        +     L +         L+       G    +++ + L   G   + + 
Sbjct: 422 LPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLM 481

Query: 269 HSIGNFTRLQFLFLGFNNFSGDLLGSI-GNLRSLEVIYIAKCNFS---GQITSSLRNLTQ 324
                   LQ L +    FS   + +    L SL  +++     S     +    R    
Sbjct: 482 EFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWN 541

Query: 325 LVVLDMAQ 332
           + ++   +
Sbjct: 542 IELIPSRR 549

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 48.0 bits (114), Expect = 4e-06
 Identities = 47/345 (13%), Positives = 98/345 (28%), Gaps = 61/345 (17%)

Query: 70  HLKWLNLALNDFNS------SEIPPEIINLSRLEL---QKPSFENLFEKLSNLKTLNLGD 120
            L+ LN  + +F          I     +L  +++   +       F+  +NL+    G 
Sbjct: 193 SLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGS 252

Query: 121 VSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLN 180
           ++ D  +P    NL     +                     +P      +++  LDL   
Sbjct: 253 LNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNE---------MPILFPFAAQIRKLDLLYA 303

Query: 181 ELQGEAASF--------------RCFGE--LPISMGNLGSLKELDLSQNGFFGELPTSI- 223
            L+ E                     G+  L +       LK L + +      +     
Sbjct: 304 LLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEG 363

Query: 224 -----------RNLFSLEKLDLSFNKLSGE----FPWSTGNFSSLKLLNLRSCGFWSKVP 268
                      +    LE + +  + ++ E          N    +L+ L      + +P
Sbjct: 364 LVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLP 423

Query: 269 HSIG------NFTRLQFLFLGFN--NFSGDLLGSIG-NLRSLEVIYIAKCNFSGQ-ITSS 318
              G         +L+           +   L  IG    ++  + +     S + +   
Sbjct: 424 LDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEF 483

Query: 319 LRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSV 363
            R    L  L+M          +   +T   +L  L +   R+S+
Sbjct: 484 SRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYRASM 527

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 44.2 bits (104), Expect = 6e-05
 Identities = 50/391 (12%), Positives = 107/391 (27%), Gaps = 65/391 (16%)

Query: 29  DCYSWDVVHCNKNTGHVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPP 88
            CY+      ++   ++  L L         N     +      W+    N+    +   
Sbjct: 59  LCYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKS-- 116

Query: 89  EIINLSRLELQKPSFENLFE-KLSNLKTLNLGDVSI--DSTIPHNIKNLSSLTFVSLRNC 145
             ++  R+ +     + L + +  +L+TL L   S      +   + +   +  + +   
Sbjct: 117 --VHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEES 174

Query: 146 ELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSL 205
                   +L ++         + + L  L+  + E      S +    +     N  SL
Sbjct: 175 SFSEKDGKWLHEL-------AQHNTSLEVLNFYMTEFAK--ISPKDLETI---ARNCRSL 222

Query: 206 KELDLSQNGF--FGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGF 263
             + +             +  NL       L+ +    E   +      L  L L   G 
Sbjct: 223 VSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP 282

Query: 264 WSKVPHSIGNFTRLQFLFLGFNNFSGD-LLGSIGNLRSLEVIYIAKCNFSGQITSSLRNL 322
              +P       +++ L L +     +     I    +LEV+                  
Sbjct: 283 NE-MPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNV------------- 328

Query: 323 TQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQY 382
               + D           L+VL    K L+ L I         +      +         
Sbjct: 329 ----IGDRG---------LEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQ-------- 367

Query: 383 RGLRSCNLTKFPNFLENQNHLVILNLSDNRI 413
           RGL +          +    L  + +  + I
Sbjct: 368 RGLIA--------LAQGCQELEYMAVYVSDI 390

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 48.9 bits (117), Expect = 9e-07
 Identities = 44/191 (23%), Positives = 80/191 (41%), Gaps = 28/191 (14%)

Query: 54  CLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENL--FEKLS 111
               S+  + +  +L  +  +    +D  S +    + N+  L L      ++   ++L+
Sbjct: 26  LKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISALKELT 85

Query: 112 NLKTLNLGDVSIDSTIPHNI-KNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLS 170
           NL  L L    +  ++P+ +   L++L  + L   +LQ+        +   +   L NL+
Sbjct: 86  NLTYLILTGNQL-QSLPNGVFDKLTNLKELVLVENQLQS--------LPDGVFDKLTNLT 136

Query: 171 KLLHLDLSLNELQGEAASFRCFGELPISM-GNLGSLKELDLSQNGFFGELPTSI-RNLFS 228
               L+L+ N+LQ           LP  +   L +L ELDLS N     LP  +   L  
Sbjct: 137 Y---LNLAHNQLQ----------SLPKGVFDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQ 182

Query: 229 LEKLDLSFNKL 239
           L+ L L  N+L
Sbjct: 183 LKDLRLYQNQL 193

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 49.2 bits (116), Expect = 1e-06
 Identities = 35/190 (18%), Positives = 66/190 (34%), Gaps = 24/190 (12%)

Query: 163 PSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTS 222
                +LS +L     LN L+      +    L I      +LK L++   G    +   
Sbjct: 158 WIEQVDLSPVLDAMPLLNNLK-----IKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVED 212

Query: 223 IR--NLFSLEKLDLSFNKLSGEFP---------WSTGNFSSLKLLNLRSCGFWSKVPHSI 271
           I   +L +LEKL L        F          +S   F +LK L +      + V    
Sbjct: 213 ILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMF 272

Query: 272 GNF---TRLQFLFLGFNNFSGD----LLGSIGNLRSLEVIYIAKCNFSGQITSSLRN-LT 323
                  +L+ + +     + +    LL  +  ++ L+ I +     S ++   L+  L 
Sbjct: 273 LESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSLP 332

Query: 324 QLVVLDMAQN 333
             + +  +Q 
Sbjct: 333 MKIDVSDSQE 342

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 48.0 bits (113), Expect = 3e-06
 Identities = 21/141 (14%), Positives = 43/141 (30%), Gaps = 16/141 (11%)

Query: 109 KLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSL-- 166
              NLK+L +    +  +    ++++      +L    L      +       +   L  
Sbjct: 191 PRPNLKSLEIISGGLPDS---VVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFS 247

Query: 167 -GNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGF----FGELPT 221
                 L  L +   E Q                  L  L+ +D+S           L  
Sbjct: 248 KDRFPNLKWLGIVDAEEQNVVVEMFL------ESDILPQLETMDISAGVLTDEGARLLLD 301

Query: 222 SIRNLFSLEKLDLSFNKLSGE 242
            +  +  L+ +++ +N LS E
Sbjct: 302 HVDKIKHLKFINMKYNYLSDE 322

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 31/170 (18%), Positives = 66/170 (38%), Gaps = 37/170 (21%)

Query: 84  SEIPPEI-INLSRLELQKPSFENL----FEKLSNLKTLNLGDVSIDSTIPHNI-KNLSSL 137
           +EIP  +   ++ + L++ + + +    F     L+ ++L +  I S +  +  + L SL
Sbjct: 24  TEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQI-SELAPDAFQGLRSL 82

Query: 138 TFVSLRNCELQAMCSFFLIQISGRIPSSL-GNLSKLLHLDLSLNELQG-EAASFRCFGEL 195
             + L   ++              +P SL   L  L  L L+ N++      +F+     
Sbjct: 83  NSLVLYGNKITE------------LPKSLFEGLFSLQLLLLNANKINCLRVDAFQ----- 125

Query: 196 PISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPW 245
                +L +L  L L  N        +   L +++ + L+ N      P+
Sbjct: 126 -----DLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN------PF 164

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 36/152 (23%), Positives = 54/152 (35%), Gaps = 37/152 (24%)

Query: 157 QISGRIPSSLGNLSKLLHLDLSLNELQG-EAASFRCFGELPISMGNLGSLKELDLSQNGF 215
            I    P +     KL  +DLS N++      +F+           L SL  L L  N  
Sbjct: 43  TIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQ----------GLRSLNSLVLYGNK- 91

Query: 216 FGELPTSI-RNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNF 274
             ELP S+   LFSL+ L L+ NK++         F  L                     
Sbjct: 92  ITELPKSLFEGLFSLQLLLLNANKIN-CLR--VDAFQDL--------------------- 127

Query: 275 TRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYI 306
             L  L L  N       G+   LR+++ +++
Sbjct: 128 HNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHL 159

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 31/154 (20%), Positives = 53/154 (34%), Gaps = 28/154 (18%)

Query: 111 SNLKTLNLGDVSIDSTIPHNI-KNLSSLTFVSLRNCELQAMCSFFLIQISGRIPS-SLGN 168
             +  + L   +I   IP         L  + L N ++              +   +   
Sbjct: 32  ETITEIRLEQNTI-KVIPPGAFSPYKKLRRIDLSNNQISE------------LAPDAFQG 78

Query: 169 LSKLLHLDLSLNELQGEAASFRCFGELPISM-GNLGSLKELDLSQNGFFGELPTSI-RNL 226
           L  L  L L  N++           ELP S+   L SL+ L L+ N     L     ++L
Sbjct: 79  LRSLNSLVLYGNKIT----------ELPKSLFEGLFSLQLLLLNANK-INCLRVDAFQDL 127

Query: 227 FSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRS 260
            +L  L L  NKL      +     +++ ++L  
Sbjct: 128 HNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQ 161

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 42.7 bits (101), Expect = 5e-05
 Identities = 25/138 (18%), Positives = 40/138 (28%), Gaps = 36/138 (26%)

Query: 201 NLGSLKELDLSQNGFFGELPTSIRNLFS----LEKLDLSFNKLSGEFPWSTGNFSSLKLL 256
           N    +ELDL            I NL +     + +D S N++          F  L+  
Sbjct: 17  NAVRDRELDLRGYKI-----PVIENLGATLDQFDAIDFSDNEIR-----KLDGFPLLR-- 64

Query: 257 NLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSG-QI 315
                              RL+ L +  N       G    L  L  + +   +      
Sbjct: 65  -------------------RLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGD 105

Query: 316 TSSLRNLTQLVVLDMAQN 333
              L +L  L  L + +N
Sbjct: 106 LDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 39.6 bits (93), Expect = 5e-04
 Identities = 25/131 (19%), Positives = 46/131 (35%), Gaps = 19/131 (14%)

Query: 59  INSSSSLFKLVHLKWLNLALN------DFNSSEIPPEIINLSRLELQKPSFENLFEKLSN 112
           I  ++     V  + L+L         +  ++    + I+ S  E++K   +     L  
Sbjct: 9   IEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRK--LDGF-PLLRR 65

Query: 113 LKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKL 172
           LKTL + +  I        + L  LT + L N  L  +               L +L  L
Sbjct: 66  LKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDL----------DPLASLKSL 115

Query: 173 LHLDLSLNELQ 183
            +L +  N + 
Sbjct: 116 TYLCILRNPVT 126

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 39.3 bits (92), Expect = 8e-04
 Identities = 20/131 (15%), Positives = 39/131 (29%), Gaps = 29/131 (22%)

Query: 164 SSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGS----LKELDLSQNGFFGEL 219
           +   N  +   LDL   ++                + NLG+       +D S N      
Sbjct: 13  AQYTNAVRDRELDLRGYKIP--------------VIENLGATLDQFDAIDFSDNEI---- 54

Query: 220 PTSIRN---LFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGF--WSKVPHSIGNF 274
              +     L  L+ L ++ N++             L  L L +        +   + + 
Sbjct: 55  -RKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDL-DPLASL 112

Query: 275 TRLQFLFLGFN 285
             L +L +  N
Sbjct: 113 KSLTYLCILRN 123

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 43.2 bits (101), Expect = 9e-05
 Identities = 19/101 (18%), Positives = 29/101 (28%), Gaps = 2/101 (1%)

Query: 188 SFRCFGELPISMGNLGSLKELDLSQNGFFGELPT-SIRNLFSLEKLDLSFNKLSGEFPWS 246
           +     +    +    +L EL +        L    +R L  L  L +  + L    P +
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDA 75

Query: 247 TGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNF 287
                 L  LNL        +         LQ L L  N  
Sbjct: 76  FHFTPRLSRLNLSFNAL-ESLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.8 bits (100), Expect = 1e-04
 Identities = 12/72 (16%), Positives = 21/72 (29%), Gaps = 1/72 (1%)

Query: 218 ELPTSIRNLFSLEKLDLSFNKLSGEFPWST-GNFSSLKLLNLRSCGFWSKVPHSIGNFTR 276
           +    +    +L +L +   +               L+ L +   G     P +     R
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 277 LQFLFLGFNNFS 288
           L  L L FN   
Sbjct: 82  LSRLNLSFNALE 93

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 66/354 (18%), Positives = 107/354 (30%), Gaps = 68/354 (19%)

Query: 55  LFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPPE-IINLSR--LELQKPSFENLFEKLS 111
           L        +L  L + + +   L       +PP  +++      E Q   F    E LS
Sbjct: 15  LAQLGCPIKNLDALENAQAIKKKLGKLGRQVLPPSELLDHLFFHYEFQNQRF--SAEVLS 72

Query: 112 NLKTLNLGDVSIDS--------TIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIP 163
           +L+ LNL  V +           +      L  +   +L +C+L       L+ +     
Sbjct: 73  SLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEV---NLASCQLDPAGLRTLLPV----- 124

Query: 164 SSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGF----FGEL 219
                  +   L L LN L  EA   +   +L +   +   +  L LS N         L
Sbjct: 125 -----FLRARKLGLQLNSLGPEAC--KDLRDLLLH--DQCQITTLRLSNNPLTAAGVAVL 175

Query: 220 PTSIRNLFSLEKLDLSFNKLSGEFPWS-----TGNFSSLKLLNLRSCGFWSKVPHSIGNF 274
              +    S+  L L    L  E           N   L+ LN+   G       ++   
Sbjct: 176 MEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRN-RQLQELNVAYNGAGDTAALALARA 234

Query: 275 ----TRLQFLFLGFNNFS-------GDLLGSIGNLRSLEVIYIAKCNFS----GQITSSL 319
                 L+ L L FN  S        DL G+      + V        S      ++   
Sbjct: 235 AREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSEVQ 294

Query: 320 RNLT-----------QLVVLDMAQNSYG--GTVELDVLLTSWKNLEALDISLNR 360
           RNL            +L++ D+  +            LL     + AL   L  
Sbjct: 295 RNLNSWDRARVQRHLELLLRDLEDSRGATLNPWRKAQLLRVEGEVRALLEQLGS 348

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 41.2 bits (97), Expect = 4e-04
 Identities = 41/354 (11%), Positives = 89/354 (25%), Gaps = 62/354 (17%)

Query: 103 FENLFEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRI 162
              L   + NL  L               + L     +       +     F  ++    
Sbjct: 15  LAQLGCPIKNLDALENAQAIKKKLGKLGRQVLPPSELLDHLFFHYEFQNQRFSAEV---- 70

Query: 163 PSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTS 222
                 LS L  L+L+   +     +               +L E++L+          +
Sbjct: 71  ------LSSLRQLNLAGVRMTPVKCTVVAAVLG----SGRHALDEVNLASCQLDPAGLRT 120

Query: 223 I-RNLFSLEKLDLSFNKLSGEFPWSTG----------NFSSLKLLNLRSCGF----WSKV 267
           +        KL L  N L  E                +   +  L L +        + +
Sbjct: 121 LLPVFLRARKLGLQLNSLGPE-----ACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVL 175

Query: 268 PHSIGNFTRLQFLFLGFNNFSGD----LLGSIGNLRSLEVIYIAKCNFSGQ----ITSSL 319
              +   T +  L L       +    L   +   R L+ + +A           +  + 
Sbjct: 176 MEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAA 235

Query: 320 RNLTQLVVLDMAQNSYG--GTVELDVLLTSWKNLEALDISLNRSSVLTKA---------- 367
           R    L +L +  N     G   L  L  + +    + +SL   + +++           
Sbjct: 236 REHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSEVQR 295

Query: 368 --------TFDATTDTTSQKIQYRGLRSCNLTKFPNFLENQNHLVILNLSDNRI 413
                         +   + ++     + N  +    L  +  +  L       
Sbjct: 296 NLNSWDRARVQRHLELLLRDLEDSRGATLNPWRKAQLLRVEGEVRALLEQLGSS 349

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 25/140 (17%), Positives = 48/140 (34%), Gaps = 31/140 (22%)

Query: 107 FEKLSNLKTLNLGDVSID------STIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISG 160
           FE+  ++       V +         +   +  L +   ++L    ++        +IS 
Sbjct: 14  FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE--------KISS 65

Query: 161 RIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELP 220
                L  +  L  L L  N +       +    L        +L+EL +S N       
Sbjct: 66  -----LSGMENLRILSLGRNLI-------KKIENLD---AVADTLEELWISYNQI--ASL 108

Query: 221 TSIRNLFSLEKLDLSFNKLS 240
           + I  L +L  L +S NK++
Sbjct: 109 SGIEKLVNLRVLYMSNNKIT 128

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 42.2 bits (99), Expect = 2e-04
 Identities = 36/182 (19%), Positives = 68/182 (37%), Gaps = 29/182 (15%)

Query: 89  EIINLSRLELQKPSFENLFEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQ 148
           + ++LS   ++  +   +  + S L+ L+L  + +   I + +   S+L  ++L  C   
Sbjct: 96  QHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCS-- 153

Query: 149 AMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCF-----GELPISMGNLG 203
               F L  +         + S+L  L+LS            CF                
Sbjct: 154 GFSEFALQTLL-------SSCSRLDELNLS-----------WCFDFTEKHVQVAVAHVSE 195

Query: 204 SLKELDLSQNGFF---GELPTSIRNLFSLEKLDLSF-NKLSGEFPWSTGNFSSLKLLNLR 259
           ++ +L+LS         +L T +R   +L  LDLS    L  +        + L+ L+L 
Sbjct: 196 TITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLS 255

Query: 260 SC 261
            C
Sbjct: 256 RC 257

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 40.8 bits (96), Expect = 3e-04
 Identities = 32/161 (19%), Positives = 58/161 (36%), Gaps = 44/161 (27%)

Query: 56  FGSINSSSSLFKLVHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENLFEKLSNLKT 115
           F  + ++    KL  L+ +N + N             ++ +E      E  FE  S +  
Sbjct: 44  FTVLEATGIFKKLPQLRKINFSNN------------KITDIE------EGAFEGASGVNE 85

Query: 116 LNLGDVSIDSTIPHNI-KNLSSLTFVSLRNCELQAMCSFFLIQISGRIPS-SLGNLSKLL 173
           + L    +++ + H + K L SL  + LR+  +              + + S   LS + 
Sbjct: 86  ILLTSNRLEN-VQHKMFKGLESLKTLMLRSNRITC------------VGNDSFIGLSSVR 132

Query: 174 HLDLSLNELQG-EAASFRCFGELPISMGNLGSLKELDLSQN 213
            L L  N++      +F            L SL  L+L  N
Sbjct: 133 LLSLYDNQITTVAPGAFD----------TLHSLSTLNLLAN 163

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 7e-04
 Identities = 52/298 (17%), Positives = 102/298 (34%), Gaps = 101/298 (33%)

Query: 73  WLNLALNDFNSSEIPPEIINLSRLELQKPS-FENLFEKLSNLKTLNLGDVSI---DSTIP 128
           W ++  +          II  S L + +P+ +  +F++L           S+    + IP
Sbjct: 347 WKHVNCDKLT------TIIESS-LNVLEPAEYRKMFDRL-----------SVFPPSAHIP 388

Query: 129 HNIKNLSSLTFVSLRNCE---LQAMCSFFLIQISG-----RIPSSLGNLSKLLHLDLSLN 180
                LS + F  +++     +  +  + L++         IPS        ++L+L + 
Sbjct: 389 --TILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS--------IYLELKV- 437

Query: 181 ELQGEAA-------------SFRCFGELPISMGN-----LGS-LKELDLSQNGFFGELPT 221
           +L+ E A             +F     +P  +       +G  LK ++        E  T
Sbjct: 438 KLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEH------PERMT 491

Query: 222 SIRNLFSLEKLDLSF--NKLSGEFPWSTGNFSSLKLLN-LRSCGFWSK-VPHSIGNFTRL 277
             R +F    LD  F   K+  +      + S L  L  L+   F+   +  +   + RL
Sbjct: 492 LFRMVF----LDFRFLEQKIRHDSTAWNASGSILNTLQQLK---FYKPYICDNDPKYERL 544

Query: 278 QFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSY 335
               L F       L  I      E +  +K            +L ++ +  MA++  
Sbjct: 545 VNAILDF-------LPKIE-----ENLICSKY----------TDLLRIAL--MAEDEA 578

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	413
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.98
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.97
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.97
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.97
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.97
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.96
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.96
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.96
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.96
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.96
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.96
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.95
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.95
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.94
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.94
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.94
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.94
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.92
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.92
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.92
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.92
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.92
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.92
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.92
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.92
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.91
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.91
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.91
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.9
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.9
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.89
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.89
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.89
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.88
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.88
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.88
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.88
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.87
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.87
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.87
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.87
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.87
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.86
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.86
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.86
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.86
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.85
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.83
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.83
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.83
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.82
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.82
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.81
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.81
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.81
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.76
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.74
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.72
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.72
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.72
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.72
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.72
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.71
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.71
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.71
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.7
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.7
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.67
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.67
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.66
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.66
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.66
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.65
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.64
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.64
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.62
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.6
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.59
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.58
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.57
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.55
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.53
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.52
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.51
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.51
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.51
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.5
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.48
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.45
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.44
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.44
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.44
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.42
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.41
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.4
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.39
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.37
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.34
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.33
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.32
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.28
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.24
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.21
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.14
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.12
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.12
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.11
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.09
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.92
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.88
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.82
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.79
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.74
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.72
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.69
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.67
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.43
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.38
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.02
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.01
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.76
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.7
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	95.92
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	95.37

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=2.6e-40  Score=329.37  Aligned_cols=370  Identities=19%  Similarity=0.265  Sum_probs=268.9

Q ss_pred             ecCCCCCCCCCCCCCCCCCccc---ceEEeeCCCCceEEEecCCCccccccCCccccccccccceeeccccCCC------
Q 048333           12 FDCRPTMASWKPEEGSVDCYSW---DVVHCNKNTGHVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFN------   82 (413)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~------   82 (413)
                      .++.|..++|+.   +.++|.|   .||.|... ++|+.|+|+++.+.+.++.  .++.+++|++|++++|.+.      
T Consensus        51 ~~~~~~~~~W~~---~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~lp~--~l~~L~~L~~L~Ls~N~~~~~~~~~  124 (636)
T 4eco_A           51 GFGTQPGANWNF---NKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPD--AIGQLTELEVLALGSHGEKVNERLF  124 (636)
T ss_dssp             C------CCCCC---SSCGGGTTCCTTEEECTT-CCEEEEECTTSCCEEEECG--GGGGCTTCCEEESCCGGGGGTCCSB
T ss_pred             CcCCccCCCCCC---CCCcccccCCCCeEEcCC-CCEEEEEecCcccCCcCCh--HHhcCccceEEECcCCccccCCccc
Confidence            567788899997   8999999   99999754 8999999999999999987  9999999999999999651      


Q ss_pred             CC-----CCC---------------------cccc----------------------CcCccccC-----Ccchhhhhhc
Q 048333           83 SS-----EIP---------------------PEII----------------------NLSRLELQ-----KPSFENLFEK  109 (413)
Q Consensus        83 ~~-----~~~---------------------~~~~----------------------~L~~L~l~-----~~~i~~~~~~  109 (413)
                      +.     .++                     ..+.                      .++.+.+.     -..+|..+++
T Consensus       125 ~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~  204 (636)
T 4eco_A          125 GPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMR  204 (636)
T ss_dssp             STTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGG
T ss_pred             cccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhc
Confidence            10     011                     0111                      11112111     1127888999


Q ss_pred             CCCCcEEEcCCccCCCC-----------------cCcccc--CCCCCcEEEccCCcccccchhhhhhcccCCCccccCCC
Q 048333          110 LSNLKTLNLGDVSIDST-----------------IPHNIK--NLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLS  170 (413)
Q Consensus       110 ~~~L~~L~l~~~~~~~~-----------------~~~~~~--~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~  170 (413)
                      +++|++|++++|.+.+.                 +|..+.  ++++|++|++++|.+.           +.+|..+.+++
T Consensus       205 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~-----------~~~p~~l~~l~  273 (636)
T 4eco_A          205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNL-----------TKLPTFLKALP  273 (636)
T ss_dssp             CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTC-----------SSCCTTTTTCS
T ss_pred             ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCC-----------ccChHHHhcCC
Confidence            99999999999999875                 888888  9999999999999887           67889999999


Q ss_pred             CccEEECCCCc-ccc-ccccccccccccccccCC------CCccEEeCCCCcCCCcchh--hhhCCCCCCEEEccCCcCc
Q 048333          171 KLLHLDLSLNE-LQG-EAASFRCFGELPISMGNL------GSLKELDLSQNGFFGELPT--SIRNLFSLEKLDLSFNKLS  240 (413)
Q Consensus       171 ~L~~L~l~~~~-i~~-~~~~~~~~~~~~~~~~~l------~~L~~L~l~~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~  240 (413)
                      +|++|++++|. +++ .         +|..+..+      ++|++|++++|.+. .+|.  .+..+++|++|++++|.+.
T Consensus       274 ~L~~L~Ls~n~~l~~~~---------lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~  343 (636)
T 4eco_A          274 EMQLINVACNRGISGEQ---------LKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLE  343 (636)
T ss_dssp             SCCEEECTTCTTSCHHH---------HHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCE
T ss_pred             CCCEEECcCCCCCcccc---------chHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCc
Confidence            99999999998 775 3         45555554      88999999999887 7777  7888999999999998887


Q ss_pred             ccCCcccCCCCCCcEEEecCCccccccchhhccCCC-CCeEecCCcccCCcccccccCCC--CCcEEEccCCcccccccc
Q 048333          241 GEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTR-LQFLFLGFNNFSGDLLGSIGNLR--SLEVIYIAKCNFSGQITS  317 (413)
Q Consensus       241 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~l~~~~--~L~~L~L~~~~~~~~~~~  317 (413)
                      +.+| .+..+++|+.|++++|.+. .+|..+..+++ |++|++++|.+. ..+..+...+  +|+.|++++|.+++..|.
T Consensus       344 g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~  420 (636)
T 4eco_A          344 GKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGK  420 (636)
T ss_dssp             EECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTC
T ss_pred             cchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchh
Confidence            6677 7778888888888888875 67777888888 888888888887 5566665543  788888888888776666


Q ss_pred             ccc-------CCCCCCEEECCCCcCcceechhHhhhcccCCCeeeccCccccccceeeeccccc-c-ccccceeeeccCC
Q 048333          318 SLR-------NLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTKATFDATTD-T-TSQKIQYRGLRSC  388 (413)
Q Consensus       318 ~~~-------~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~~-~-~~~~L~~L~l~~~  388 (413)
                      .+.       .+++|+.|++++|.+. .++ ...+..+++|++|++++|.++.++...+..... . .+++|++|++++|
T Consensus       421 ~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp-~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N  498 (636)
T 4eco_A          421 NFDPLDPTPFKGINVSSINLSNNQIS-KFP-KELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFN  498 (636)
T ss_dssp             SSCTTCSSCCCCCCEEEEECCSSCCC-SCC-THHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSS
T ss_pred             hhcccccccccCCCCCEEECcCCccC-cCC-HHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCC
Confidence            666       6678888888888777 344 225666777888888888766555433221110 0 1225555555555


Q ss_pred             CCCCcchHhh--cCCCCcEEeCCCCCC
Q 048333          389 NLTKFPNFLE--NQNHLVILNLSDNRI  413 (413)
Q Consensus       389 ~l~~l~~~~~--~l~~L~~L~l~~n~i  413 (413)
                      .++.+|..+.  .+++|+.|++++|+|
T Consensus       499 ~l~~lp~~~~~~~l~~L~~L~Ls~N~l  525 (636)
T 4eco_A          499 KLTKLSDDFRATTLPYLVGIDLSYNSF  525 (636)
T ss_dssp             CCCBCCGGGSTTTCTTCCEEECCSSCC
T ss_pred             cCCccChhhhhccCCCcCEEECCCCCC
Confidence            5555555544  555555555555543

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=3.5e-40  Score=335.65  Aligned_cols=374  Identities=26%  Similarity=0.393  Sum_probs=216.0

Q ss_pred             cCCCCCCCCCCCCCCCCCcccceEEeeCCCCceEEEecCCCccccc---cCC---------------------ccccccc
Q 048333           13 DCRPTMASWKPEEGSVDCYSWDVVHCNKNTGHVIKLNLSHGCLFGS---INS---------------------SSSLFKL   68 (413)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~---~~~---------------------~~~~~~l   68 (413)
                      |+. .+++|++   +.+||.|.||.|.  .++|+.|+|+++.+.+.   ++.                     +..+..+
T Consensus        26 ~~~-~l~~W~~---~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l   99 (768)
T 3rgz_A           26 DKN-LLPDWSS---NKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCS   99 (768)
T ss_dssp             CTT-SSTTCCT---TSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEEECCCCCCCC
T ss_pred             Ccc-cccCCCC---CCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcCCCchhhccC
Confidence            666 8999986   7899999999997  57888898888766543   110                     1245566


Q ss_pred             cccceeeccccCCCCCCCCc------------------------------cccCcCccccCCcchh----hh---hhc--
Q 048333           69 VHLKWLNLALNDFNSSEIPP------------------------------EIINLSRLELQKPSFE----NL---FEK--  109 (413)
Q Consensus        69 ~~L~~L~l~~~~~~~~~~~~------------------------------~~~~L~~L~l~~~~i~----~~---~~~--  109 (413)
                      ++|++|++++|.+.+. ++.                              .+.+|+.|++..+.+.    ..   +.+  
T Consensus       100 ~~L~~L~Ls~n~l~~~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~  178 (768)
T 3rgz_A          100 ASLTSLDLSRNSLSGP-VTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCG  178 (768)
T ss_dssp             TTCCEEECCSSEEEEE-GGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCT
T ss_pred             CCCCEEECCCCcCCCc-CCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCC
Confidence            6666666666655432 222                              2233333444333321    11   223  


Q ss_pred             --------------------CCCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCC
Q 048333          110 --------------------LSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNL  169 (413)
Q Consensus       110 --------------------~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~  169 (413)
                                          +++|++|++++|.+.+.+|. +.++++|++|++++|.++           +..|..+.++
T Consensus       179 ~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~-----------~~~~~~l~~l  246 (768)
T 3rgz_A          179 ELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLS-----------GDFSRAISTC  246 (768)
T ss_dssp             TCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCC-----------SCHHHHTTTC
T ss_pred             CCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCC-----------CcccHHHhcC
Confidence                                33444444444444433333 445555555555555444           3344455555


Q ss_pred             CCccEEECCCCccccccccc-------------cccccccccccCC-CCccEEeCCCCcCCCcchhhhhCCCCCCEEEcc
Q 048333          170 SKLLHLDLSLNELQGEAASF-------------RCFGELPISMGNL-GSLKELDLSQNGFFGELPTSIRNLFSLEKLDLS  235 (413)
Q Consensus       170 ~~L~~L~l~~~~i~~~~~~~-------------~~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~  235 (413)
                      ++|++|++++|.+.+..+..             ...+.+|..+... ++|++|++++|.+...+|..+..+++|++|+++
T Consensus       247 ~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~  326 (768)
T 3rgz_A          247 TELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALS  326 (768)
T ss_dssp             SSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECC
T ss_pred             CCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECC
Confidence            66666666665554322211             1112344444443 666677776666655566666666677777776


Q ss_pred             CCcCcccCCcc-cCCCCCCcEEEecCCccccccchhhccCC-CCCeEecCCc--------------------------cc
Q 048333          236 FNKLSGEFPWS-TGNFSSLKLLNLRSCGFWSKVPHSIGNFT-RLQFLFLGFN--------------------------NF  287 (413)
Q Consensus       236 ~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~--------------------------~~  287 (413)
                      +|.+.+.+|.. +..+++|++|++++|.+.+..|..+..++ +|++|++++|                          .+
T Consensus       327 ~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l  406 (768)
T 3rgz_A          327 SNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGF  406 (768)
T ss_dssp             SSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEE
T ss_pred             CCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCcc
Confidence            66665444443 55666666666666666545555444443 4444444444                          44


Q ss_pred             CCcccccccCCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcceechhHhhhcccCCCeeeccCcccccccee
Q 048333          288 SGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTKA  367 (413)
Q Consensus       288 ~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~  367 (413)
                      .+..+..+..+++|+.|++++|.+++..|..+..+++|+.|++++|.+.+..+ . .+..+++|++|++++|.+      
T Consensus       407 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-~-~~~~l~~L~~L~L~~N~l------  478 (768)
T 3rgz_A          407 TGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIP-Q-ELMYVKTLETLILDFNDL------  478 (768)
T ss_dssp             EEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCC-G-GGGGCTTCCEEECCSSCC------
T ss_pred             ccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCC-H-HHcCCCCceEEEecCCcc------
Confidence            33344445555566666666666555555555666666666666666554444 2 455666666666666663      


Q ss_pred             eecccccc-ccccceeeeccCCCCC-CcchHhhcCCCCcEEeCCCCCC
Q 048333          368 TFDATTDT-TSQKIQYRGLRSCNLT-KFPNFLENQNHLVILNLSDNRI  413 (413)
Q Consensus       368 ~~~~~~~~-~~~~L~~L~l~~~~l~-~l~~~~~~l~~L~~L~l~~n~i  413 (413)
                      .+..+..+ .+++|++|++++|+++ .+|..+..+++|+.|++++|++
T Consensus       479 ~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l  526 (768)
T 3rgz_A          479 TGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSF  526 (768)
T ss_dssp             CSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC
T ss_pred             cCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcc
Confidence            23333333 6778888888888888 7788888888888888888865

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=2e-37  Score=314.14  Aligned_cols=356  Identities=17%  Similarity=0.201  Sum_probs=250.5

Q ss_pred             ceEEeeCCCCceEEEecCCCccccccCCccccccccccceeec-cccCCCCCCCCc------------------------
Q 048333           34 DVVHCNKNTGHVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNL-ALNDFNSSEIPP------------------------   88 (413)
Q Consensus        34 ~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l-~~~~~~~~~~~~------------------------   88 (413)
                      .||.|.. .++|+.|+|+++.+.+.+++  .++.+++|++|++ ++|.+.+.....                        
T Consensus       315 ~GV~C~~-~~~V~~L~Ls~~~L~G~ip~--~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~  391 (876)
T 4ecn_A          315 PGVDLDN-NGRVTGLSLAGFGAKGRVPD--AIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMF  391 (876)
T ss_dssp             TTEEECT-TSCEEEEECTTTCCEEEECG--GGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHH
T ss_pred             CceEecC-CCCEEEEECccCCCCCcCch--HHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhh
Confidence            9999975 58999999999999999988  9999999999999 777543320000                        


Q ss_pred             -----------------------------cccCcCccccCC-----cchhhhhhcCCCCcEEEcCCccCCC---------
Q 048333           89 -----------------------------EIINLSRLELQK-----PSFENLFEKLSNLKTLNLGDVSIDS---------  125 (413)
Q Consensus        89 -----------------------------~~~~L~~L~l~~-----~~i~~~~~~~~~L~~L~l~~~~~~~---------  125 (413)
                                                   ....++.+.+..     ..+|..++++++|++|++++|.+.+         
T Consensus       392 l~~~~~~~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~  471 (876)
T 4ecn_A          392 LDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWED  471 (876)
T ss_dssp             TCCCGGGGSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSC
T ss_pred             hccCcchhhhHHHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccc
Confidence                                         000111121111     1178889999999999999999987         


Q ss_pred             --------CcCcccc--CCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCc-ccc-ccc-ccccc
Q 048333          126 --------TIPHNIK--NLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNE-LQG-EAA-SFRCF  192 (413)
Q Consensus       126 --------~~~~~~~--~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-i~~-~~~-~~~~~  192 (413)
                              .+|..++  ++++|++|++++|.+.           +.+|..+.++++|+.|++++|. +++ ..+ .+   
T Consensus       472 ~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~-----------~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i---  537 (876)
T 4ecn_A          472 ANSDYAKQYENEELSWSNLKDLTDVELYNCPNM-----------TQLPDFLYDLPELQSLNIACNRGISAAQLKADW---  537 (876)
T ss_dssp             TTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTC-----------CSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHH---
T ss_pred             cccccccccCChhhhhccCCCCCEEECcCCCCC-----------ccChHHHhCCCCCCEEECcCCCCcccccchHHH---
Confidence                    3888877  9999999999999877           6788899999999999999998 775 211 00   


Q ss_pred             ccccccccCCCCccEEeCCCCcCCCcchh--hhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchh
Q 048333          193 GELPISMGNLGSLKELDLSQNGFFGELPT--SIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHS  270 (413)
Q Consensus       193 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~  270 (413)
                      +.++..+..+++|+.|++++|.+. .+|.  .+..+++|+.|++++|.+. .+| .+..+++|+.|++++|.+. .+|..
T Consensus       538 ~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~  613 (876)
T 4ecn_A          538 TRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPED  613 (876)
T ss_dssp             HHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTT
T ss_pred             HhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHH
Confidence            011113344568999999999887 7777  8888999999999998887 666 7888888999999988885 77777


Q ss_pred             hccCCC-CCeEecCCcccCCcccccccCCC--CCcEEEccCCcccccccccc---c--CCCCCCEEECCCCcCcceechh
Q 048333          271 IGNFTR-LQFLFLGFNNFSGDLLGSIGNLR--SLEVIYIAKCNFSGQITSSL---R--NLTQLVVLDMAQNSYGGTVELD  342 (413)
Q Consensus       271 ~~~~~~-L~~L~l~~~~~~~~~~~~l~~~~--~L~~L~L~~~~~~~~~~~~~---~--~~~~L~~L~l~~n~~~~~~~~~  342 (413)
                      +..+++ |+.|++++|.+. ..+..+...+  +|+.|++++|.+.+.+|...   .  .+++|+.|++++|.+. .++ .
T Consensus       614 l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp-~  690 (876)
T 4ecn_A          614 FCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFP-T  690 (876)
T ss_dssp             SCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCC-H
T ss_pred             HhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccC-H
Confidence            888888 999999988887 5566665544  38888888888765443221   1  3346777777777776 334 2


Q ss_pred             HhhhcccCCCeeeccCccccccceeeeccccc-c-ccccceeeeccCCCCCCcchHhh--cCCCCcEEeCCCCCC
Q 048333          343 VLLTSWKNLEALDISLNRSSVLTKATFDATTD-T-TSQKIQYRGLRSCNLTKFPNFLE--NQNHLVILNLSDNRI  413 (413)
Q Consensus       343 ~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~~-~-~~~~L~~L~l~~~~l~~l~~~~~--~l~~L~~L~l~~n~i  413 (413)
                      ..+..+++|+.|++++|.++.++...+..... . .+++|++|++++|+++.+|..+.  .+++|+.|++++|+|
T Consensus       691 ~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L  765 (876)
T 4ecn_A          691 ELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCF  765 (876)
T ss_dssp             HHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCC
T ss_pred             HHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCC
Confidence            24556777777777777766554433322110 0 23356666666666665555554  556666666665543

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=1.8e-37  Score=315.75  Aligned_cols=353  Identities=28%  Similarity=0.417  Sum_probs=256.4

Q ss_pred             CCCceEEEecCCCccccccCCcccccc-ccccceeeccccCCCCCCCCccc---cCcCccccCCcch----hh-hhhcCC
Q 048333           41 NTGHVIKLNLSHGCLFGSINSSSSLFK-LVHLKWLNLALNDFNSSEIPPEI---INLSRLELQKPSF----EN-LFEKLS  111 (413)
Q Consensus        41 ~~~~l~~L~l~~~~~~~~~~~~~~~~~-l~~L~~L~l~~~~~~~~~~~~~~---~~L~~L~l~~~~i----~~-~~~~~~  111 (413)
                      ..+++++|++++|.+.+.++.  .+.. +++|++|++++|.+.+. ++..+   .+|+.|++..+.+    +. .+..++
T Consensus       267 ~l~~L~~L~L~~n~l~~~ip~--~~~~~~~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~  343 (768)
T 3rgz_A          267 PLKSLQYLSLAENKFTGEIPD--FLSGACDTLTGLDLSGNHFYGA-VPPFFGSCSLLESLALSSNNFSGELPMDTLLKMR  343 (768)
T ss_dssp             CCTTCCEEECCSSEEEESCCC--CSCTTCTTCSEEECCSSEEEEC-CCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCT
T ss_pred             ccCCCCEEECcCCccCCccCH--HHHhhcCcCCEEECcCCcCCCc-cchHHhcCCCccEEECCCCcccCcCCHHHHhcCC
Confidence            346778888888877766665  5555 37888888888777654 55443   4555556665543    33 267777


Q ss_pred             CCcEEEcCCccCCCCcCccccCCC-CCcEEEccCCcccc-cchhh--------------hhhcccCCCccccCCCCccEE
Q 048333          112 NLKTLNLGDVSIDSTIPHNIKNLS-SLTFVSLRNCELQA-MCSFF--------------LIQISGRIPSSLGNLSKLLHL  175 (413)
Q Consensus       112 ~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~l~~-~~~~~--------------~~~~~~~~~~~l~~~~~L~~L  175 (413)
                      +|++|++++|.+.+.+|..+..++ +|++|++++|.+.+ ++...              .-.+++.+|..+.++++|+.|
T Consensus       344 ~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  423 (768)
T 3rgz_A          344 GLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSL  423 (768)
T ss_dssp             TCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEE
T ss_pred             CCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEE
Confidence            788888877777666666666665 67777777766543 00000              000224556666777777777


Q ss_pred             ECCCCccccccccccccccccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcE
Q 048333          176 DLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKL  255 (413)
Q Consensus       176 ~l~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~  255 (413)
                      ++++|.+++.         .|..+..+++|+.|++++|.+...+|..+..+++|+.|++++|.+.+..|..+..+++|++
T Consensus       424 ~Ls~N~l~~~---------~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~  494 (768)
T 3rgz_A          424 HLSFNYLSGT---------IPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNW  494 (768)
T ss_dssp             ECCSSEEESC---------CCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCE
T ss_pred             ECcCCcccCc---------ccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCE
Confidence            7777776643         5667777888888888888887777777888888888888888887777777888888888


Q ss_pred             EEecCCccccccchhhccCCCCCeEecCCcccCCcccccccCCCCCcEEEccCCccccccccc-----------------
Q 048333          256 LNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSS-----------------  318 (413)
Q Consensus       256 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~-----------------  318 (413)
                      |++++|.+.+..|..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++.+|..                 
T Consensus       495 L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~  574 (768)
T 3rgz_A          495 ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKR  574 (768)
T ss_dssp             EECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCE
T ss_pred             EEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccc
Confidence            888888887777888888888888888888887777777888888888888888776544432                 


Q ss_pred             -----------------------------------------------------ccCCCCCCEEECCCCcCcceechhHhh
Q 048333          319 -----------------------------------------------------LRNLTQLVVLDMAQNSYGGTVELDVLL  345 (413)
Q Consensus       319 -----------------------------------------------------~~~~~~L~~L~l~~n~~~~~~~~~~~~  345 (413)
                                                                           +..+++|+.|++++|.+.+.++ . .+
T Consensus       575 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip-~-~l  652 (768)
T 3rgz_A          575 YVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIP-K-EI  652 (768)
T ss_dssp             EEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCC-G-GG
T ss_pred             ccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCC-H-HH
Confidence                                                                 2335678888888888887777 4 67


Q ss_pred             hcccCCCeeeccCccccccceeeecccccc-ccccceeeeccCCCCC-CcchHhhcCCCCcEEeCCCCCC
Q 048333          346 TSWKNLEALDISLNRSSVLTKATFDATTDT-TSQKIQYRGLRSCNLT-KFPNFLENQNHLVILNLSDNRI  413 (413)
Q Consensus       346 ~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~-~~~~L~~L~l~~~~l~-~l~~~~~~l~~L~~L~l~~n~i  413 (413)
                      ..++.|+.|++++|.      ..+.+|..+ .+++|+.|++++|+++ .+|..+..+++|+.|++++|++
T Consensus       653 ~~l~~L~~L~Ls~N~------l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l  716 (768)
T 3rgz_A          653 GSMPYLFILNLGHND------ISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL  716 (768)
T ss_dssp             GGCTTCCEEECCSSC------CCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEE
T ss_pred             hccccCCEEeCcCCc------cCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcc
Confidence            888889999999988      555566655 7788999999999998 8888899999999999998864

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=1.2e-35  Score=285.19  Aligned_cols=342  Identities=20%  Similarity=0.216  Sum_probs=212.0

Q ss_pred             CCceEEEecCCCccccccCCccccccccccceeeccccCCCCCCCC---ccccCcCccccCCcch----hhhhhcCCCCc
Q 048333           42 TGHVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIP---PEIINLSRLELQKPSF----ENLFEKLSNLK  114 (413)
Q Consensus        42 ~~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~---~~~~~L~~L~l~~~~i----~~~~~~~~~L~  114 (413)
                      .+++++|++++|.+.+..+.  .+..+++|++|++++|.+.....+   ..+.+|+.|++.++.+    +..++.+++|+
T Consensus        29 ~~~l~~L~Ls~n~i~~~~~~--~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  106 (455)
T 3v47_A           29 PAHVNYVDLSLNSIAELNET--SFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLE  106 (455)
T ss_dssp             CTTCCEEECCSSCCCEECTT--TTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCC
T ss_pred             CCccCEEEecCCccCcCChh--HhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCC
Confidence            36899999999999876666  899999999999999987543111   1223344444443332    22344445555


Q ss_pred             EEEcCCccCCCCcCcc--ccCCCCCcEEEccCCcccccchhhhhhcccCCCcc-ccCCCCccEEECCCCccccccccccc
Q 048333          115 TLNLGDVSIDSTIPHN--IKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSS-LGNLSKLLHLDLSLNELQGEAASFRC  191 (413)
Q Consensus       115 ~L~l~~~~~~~~~~~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~-l~~~~~L~~L~l~~~~i~~~~~~~~~  191 (413)
                      +|++++|.+.+..+..  +..+++|++|++++|.+.           +..|.. +.++++|++|++++|.+++.      
T Consensus       107 ~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~-----------~~~~~~~~~~l~~L~~L~L~~n~l~~~------  169 (455)
T 3v47_A          107 VLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIK-----------KIQPASFFLNMRRFHVLDLTFNKVKSI------  169 (455)
T ss_dssp             EEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCC-----------SCCCCGGGGGCTTCCEEECTTCCBSCC------
T ss_pred             EEeCCCCCCCccccCcccccCcccCCEEECCCCccC-----------ccCcccccCCCCcccEEeCCCCccccc------
Confidence            5555555444322222  444455555555554443           122222 34445555555555544432      


Q ss_pred             cccccccccCC--CCccEEeCCCCcCCCcchhh--------hhCCCCCCEEEccCCcCcccCCcccC---CCCCCcEEEe
Q 048333          192 FGELPISMGNL--GSLKELDLSQNGFFGELPTS--------IRNLFSLEKLDLSFNKLSGEFPWSTG---NFSSLKLLNL  258 (413)
Q Consensus       192 ~~~~~~~~~~l--~~L~~L~l~~~~~~~~~~~~--------l~~~~~L~~L~l~~~~~~~~~~~~l~---~~~~L~~L~l  258 (413)
                         .+..+..+  .+++.|+++++.+....+..        +..+++|+.|++++|.+....+..+.   ...+|+.|++
T Consensus       170 ---~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l  246 (455)
T 3v47_A          170 ---CEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLIL  246 (455)
T ss_dssp             ---CTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEEC
T ss_pred             ---ChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEee
Confidence               11222222  34444555444443221111        12334455555555554433332221   1244555555


Q ss_pred             cCCccccc----------cchhhc--cCCCCCeEecCCcccCCcccccccCCCCCcEEEccCCcccccccccccCCCCCC
Q 048333          259 RSCGFWSK----------VPHSIG--NFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLV  326 (413)
Q Consensus       259 ~~~~~~~~----------~~~~~~--~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~  326 (413)
                      +++...+.          ....+.  ..++|+.|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|+
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  326 (455)
T 3v47_A          247 SNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLL  326 (455)
T ss_dssp             TTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred             ccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCC
Confidence            54432111          011111  126899999999999877788889999999999999999977788899999999


Q ss_pred             EEECCCCcCcceechhHhhhcccCCCeeeccCccccccceeeecccccc-ccccceeeeccCCCCCCcch-HhhcCCCCc
Q 048333          327 VLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDT-TSQKIQYRGLRSCNLTKFPN-FLENQNHLV  404 (413)
Q Consensus       327 ~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~-~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~  404 (413)
                      +|++++|.+.+..+ . .+..+++|++|++++|.++.+      .+..+ .+++|++|++++|+++.+|. .+..+++|+
T Consensus       327 ~L~Ls~N~l~~~~~-~-~~~~l~~L~~L~Ls~N~l~~~------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  398 (455)
T 3v47_A          327 KLNLSQNFLGSIDS-R-MFENLDKLEVLDLSYNHIRAL------GDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQ  398 (455)
T ss_dssp             EEECCSSCCCEECG-G-GGTTCTTCCEEECCSSCCCEE------CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred             EEECCCCccCCcCh-h-HhcCcccCCEEECCCCccccc------ChhhccccccccEEECCCCccccCCHhHhccCCccc
Confidence            99999999975544 3 678899999999999995443      23333 67899999999999998775 468999999


Q ss_pred             EEeCCCCCC
Q 048333          405 ILNLSDNRI  413 (413)
Q Consensus       405 ~L~l~~n~i  413 (413)
                      .|++++|++
T Consensus       399 ~L~l~~N~l  407 (455)
T 3v47_A          399 KIWLHTNPW  407 (455)
T ss_dssp             EEECCSSCB
T ss_pred             EEEccCCCc
Confidence            999999975

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=2.6e-34  Score=285.79  Aligned_cols=203  Identities=22%  Similarity=0.243  Sum_probs=153.5

Q ss_pred             CCCccEEeCCCCcCCCc--chhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccc-hhhccCCCCC
Q 048333          202 LGSLKELDLSQNGFFGE--LPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVP-HSIGNFTRLQ  278 (413)
Q Consensus       202 l~~L~~L~l~~~~~~~~--~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~  278 (413)
                      +++|+.|++++|.+...  .+..+..+++|++|++++|.+. ..+..+..+++|+.|++++|.+.+..+ ..+..+++|+
T Consensus       349 l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~  427 (606)
T 3vq2_A          349 LPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLL  427 (606)
T ss_dssp             CTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-EECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCC
T ss_pred             CCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc-cchhhccCCCCCCeeECCCCccCCccChhhhhccccCC
Confidence            44555555555554322  2555666777777777777665 345667778888888888887766555 5677888888


Q ss_pred             eEecCCcccCCcccccccCCCCCcEEEccCCccccc-ccccccCCCCCCEEECCCCcCcceechhHhhhcccCCCeeecc
Q 048333          279 FLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQ-ITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDIS  357 (413)
Q Consensus       279 ~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~-~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~  357 (413)
                      +|++++|.+....+..+..+++|+.|++++|.+++. .+..+..+++|+.|++++|.+.+..+ . .+..+++|++|+++
T Consensus       428 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~-~~~~l~~L~~L~Ls  505 (606)
T 3vq2_A          428 YLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISW-G-VFDTLHRLQLLNMS  505 (606)
T ss_dssp             EEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT-T-TTTTCTTCCEEECC
T ss_pred             EEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccCh-h-hhcccccCCEEECC
Confidence            888888888776777788888999999999988763 67788888999999999998886554 3 57788999999999


Q ss_pred             Cccccccceeeecccccc-ccccceeeeccCCCCCCcchHhhcCC-CCcEEeCCCCCC
Q 048333          358 LNRSSVLTKATFDATTDT-TSQKIQYRGLRSCNLTKFPNFLENQN-HLVILNLSDNRI  413 (413)
Q Consensus       358 ~~~i~~l~~~~~~~~~~~-~~~~L~~L~l~~~~l~~l~~~~~~l~-~L~~L~l~~n~i  413 (413)
                      +|.++.+      .+..+ .+++|++|++++|+++.+|..+..++ +|+.|++++|++
T Consensus       506 ~N~l~~~------~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~  557 (606)
T 3vq2_A          506 HNNLLFL------DSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSV  557 (606)
T ss_dssp             SSCCSCE------EGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCC
T ss_pred             CCcCCCc------CHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCc
Confidence            9985543      23333 67889999999999999998888887 599999999875

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=1.2e-34  Score=288.50  Aligned_cols=340  Identities=14%  Similarity=0.208  Sum_probs=279.0

Q ss_pred             CCCceEEEecCCCccccc-----------------cCCccccc--cccccceeeccccCCCCCCCCcccc---CcCcccc
Q 048333           41 NTGHVIKLNLSHGCLFGS-----------------INSSSSLF--KLVHLKWLNLALNDFNSSEIPPEII---NLSRLEL   98 (413)
Q Consensus        41 ~~~~l~~L~l~~~~~~~~-----------------~~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~---~L~~L~l   98 (413)
                      ..+++++|++++|.+.+.                 +|.  .+.  ++++|++|++++|.+.+. +|..+.   +|+.|++
T Consensus       204 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~--~l~~~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~L  280 (636)
T 4eco_A          204 RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTE--DLKWDNLKDLTDVEVYNCPNLTK-LPTFLKALPEMQLINV  280 (636)
T ss_dssp             GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS--CCCGGGCTTCCEEEEECCTTCSS-CCTTTTTCSSCCEEEC
T ss_pred             cccCCCEEECcCCccccccccccccccccchhcccCch--hhhhcccCCCCEEEecCCcCCcc-ChHHHhcCCCCCEEEC
Confidence            567999999999999875                 666  777  999999999999998876 776655   5566677


Q ss_pred             CCcc------hhhhhhcC------CCCcEEEcCCccCCCCcCc--cccCCCCCcEEEccCCcccccchhhhhhcccCCCc
Q 048333           99 QKPS------FENLFEKL------SNLKTLNLGDVSIDSTIPH--NIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPS  164 (413)
Q Consensus        99 ~~~~------i~~~~~~~------~~L~~L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~  164 (413)
                      ..+.      +|..+..+      ++|++|++++|.+. .+|.  .+..+++|++|++++|.+.           +.+| 
T Consensus       281 s~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~-----------g~ip-  347 (636)
T 4eco_A          281 ACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLE-----------GKLP-  347 (636)
T ss_dssp             TTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCE-----------EECC-
T ss_pred             cCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCc-----------cchh-
Confidence            7664      56667665      99999999999998 7888  8999999999999999987           4677 


Q ss_pred             cccCCCCccEEECCCCccccccccccccccccccccCCCC-ccEEeCCCCcCCCcchhhhhCCC--CCCEEEccCCcCcc
Q 048333          165 SLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGS-LKELDLSQNGFFGELPTSIRNLF--SLEKLDLSFNKLSG  241 (413)
Q Consensus       165 ~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~l~~-L~~L~l~~~~~~~~~~~~l~~~~--~L~~L~l~~~~~~~  241 (413)
                      .+..+++|+.|++++|.++          .+|..+..+++ |++|++++|.+. .+|..+..++  +|+.|++++|.+.+
T Consensus       348 ~~~~l~~L~~L~L~~N~l~----------~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~  416 (636)
T 4eco_A          348 AFGSEIKLASLNLAYNQIT----------EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGS  416 (636)
T ss_dssp             CCEEEEEESEEECCSSEEE----------ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTT
T ss_pred             hhCCCCCCCEEECCCCccc----------cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCC
Confidence            7888999999999999988          26778889999 999999999998 7777766654  89999999999987


Q ss_pred             cCCcccC-------CCCCCcEEEecCCccccccchhhccCCCCCeEecCCcccCCcccccccCC-------CCCcEEEcc
Q 048333          242 EFPWSTG-------NFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNL-------RSLEVIYIA  307 (413)
Q Consensus       242 ~~~~~l~-------~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~-------~~L~~L~L~  307 (413)
                      ..|..+.       .+++|+.|++++|.+....+..+..+++|++|++++|.+.......+...       ++|+.|+++
T Consensus       417 ~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls  496 (636)
T 4eco_A          417 VDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLR  496 (636)
T ss_dssp             TTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECC
T ss_pred             cchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECc
Confidence            7887777       77899999999999964444456678999999999999884333333322       399999999


Q ss_pred             CCccccccccccc--CCCCCCEEECCCCcCcceechhHhhhcccCCCeeeccCccccccceeeecccccc-ccccceeee
Q 048333          308 KCNFSGQITSSLR--NLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDT-TSQKIQYRG  384 (413)
Q Consensus       308 ~~~~~~~~~~~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~-~~~~L~~L~  384 (413)
                      +|.++ .+|..+.  .+++|+.|++++|.+.+ ++ . .+..+++|++|++++|+...-.......+..+ .+++|++|+
T Consensus       497 ~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip-~-~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~  572 (636)
T 4eco_A          497 FNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FP-T-QPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQ  572 (636)
T ss_dssp             SSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CC-C-GGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEE
T ss_pred             CCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cC-h-hhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEE
Confidence            99998 6777776  89999999999999987 44 2 57789999999996543111111444555555 789999999


Q ss_pred             ccCCCCCCcchHhhcCCCCcEEeCCCCCC
Q 048333          385 LRSCNLTKFPNFLENQNHLVILNLSDNRI  413 (413)
Q Consensus       385 l~~~~l~~l~~~~~~l~~L~~L~l~~n~i  413 (413)
                      +++|.++.+|..+.  ++|+.|++++|++
T Consensus       573 Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l  599 (636)
T 4eco_A          573 IGSNDIRKVNEKIT--PNISVLDIKDNPN  599 (636)
T ss_dssp             CCSSCCCBCCSCCC--TTCCEEECCSCTT
T ss_pred             CCCCcCCccCHhHh--CcCCEEECcCCCC
Confidence            99999999998765  8999999999975

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=1.2e-33  Score=280.95  Aligned_cols=366  Identities=22%  Similarity=0.221  Sum_probs=195.1

Q ss_pred             CCceEEEecCCCccccccCCccccccccccceeeccccCCCCCCCCc---cccCcCccccCCcch----hhhhhcCCCCc
Q 048333           42 TGHVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPP---EIINLSRLELQKPSF----ENLFEKLSNLK  114 (413)
Q Consensus        42 ~~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~~~i----~~~~~~~~~L~  114 (413)
                      ..++++|++++|.+.+..+.  .+..+++|++|++++|.+... .+.   .+.+|+.|++.++.+    +..++.+++|+
T Consensus        32 ~~~l~~L~Ls~n~i~~~~~~--~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  108 (606)
T 3t6q_A           32 PNSTECLEFSFNVLPTIQNT--TFSRLINLTFLDLTRCQIYWI-HEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALK  108 (606)
T ss_dssp             CTTCCEEECTTCCCSEECTT--TSTTCTTCSEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCC
T ss_pred             CCcCcEEEccCCccCcCChh--HhccCccceEEECCCCcccee-ChhhccCccccCeeeCCCCcccccChhhhccccccc
Confidence            45789999999999876666  889999999999999988764 343   355677777776655    45688899999


Q ss_pred             EEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhh-------------hcccCCCccccCCCCcc--EEECCC
Q 048333          115 TLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLI-------------QISGRIPSSLGNLSKLL--HLDLSL  179 (413)
Q Consensus       115 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~-------------~~~~~~~~~l~~~~~L~--~L~l~~  179 (413)
                      +|++++|.+.+..+..+.++++|++|++++|.+..++.....             .+++..+..++.+++|+  .|++++
T Consensus       109 ~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~  188 (606)
T 3t6q_A          109 HLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNG  188 (606)
T ss_dssp             EEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTT
T ss_pred             EeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCC
Confidence            999999998876567788899999999999988743110000             01111122233334444  444444


Q ss_pred             Cccccccccccccc---------------------------------------cc-cccccCCC--CccEEeCCCCcCCC
Q 048333          180 NELQGEAASFRCFG---------------------------------------EL-PISMGNLG--SLKELDLSQNGFFG  217 (413)
Q Consensus       180 ~~i~~~~~~~~~~~---------------------------------------~~-~~~~~~l~--~L~~L~l~~~~~~~  217 (413)
                      |.++...+......                                       .+ +..+..+.  +++.|++++|.+..
T Consensus       189 n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~  268 (606)
T 3t6q_A          189 NDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFN  268 (606)
T ss_dssp             CCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSS
T ss_pred             CccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCc
Confidence            44433221100000                                       00 00000000  34444555554443


Q ss_pred             cchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccCCCCCeEecCCcccCCcc-ccccc
Q 048333          218 ELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDL-LGSIG  296 (413)
Q Consensus       218 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~  296 (413)
                      ..+..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.... ...+.
T Consensus       269 ~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~  347 (606)
T 3t6q_A          269 ISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLE  347 (606)
T ss_dssp             CCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTT
T ss_pred             cCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhh
Confidence            34444555556666666665554 44555555556666666655554444444555555555555555443222 22244


Q ss_pred             CCCCCcEEEccCCcccccc--cccccCCCCCCEEECCCCcCcceechhHhhhcccCCCeeeccCccccccce--------
Q 048333          297 NLRSLEVIYIAKCNFSGQI--TSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTK--------  366 (413)
Q Consensus       297 ~~~~L~~L~L~~~~~~~~~--~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~--------  366 (413)
                      .+++|+.|++++|.+++..  +..+..+++|++|++++|.+.+..+ . .+..+++|++|++++|.++....        
T Consensus       348 ~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~  425 (606)
T 3t6q_A          348 NLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKT-E-AFKECPQLELLDLAFTRLKVKDAQSPFQNLH  425 (606)
T ss_dssp             TCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECT-T-TTTTCTTCSEEECTTCCEECCTTCCTTTTCT
T ss_pred             ccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCH-H-HhcCCccCCeEECCCCcCCCcccchhhhCcc
Confidence            4555555555555544322  3344444555555555554443222 1 34444444444444444221100        


Q ss_pred             -----------eeecccccc-ccccceeeeccCCCCCC--c--chHhhcCCCCcEEeCCCCCC
Q 048333          367 -----------ATFDATTDT-TSQKIQYRGLRSCNLTK--F--PNFLENQNHLVILNLSDNRI  413 (413)
Q Consensus       367 -----------~~~~~~~~~-~~~~L~~L~l~~~~l~~--l--~~~~~~l~~L~~L~l~~n~i  413 (413)
                                 .....+..+ .+++|++|++++|.++.  +  +..+..+++|+.|++++|++
T Consensus       426 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l  488 (606)
T 3t6q_A          426 LLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDL  488 (606)
T ss_dssp             TCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCC
T ss_pred             cCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCcc
Confidence                       111112212 45566666666666552  1  23456666666666666653

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=4.3e-33  Score=277.02  Aligned_cols=106  Identities=17%  Similarity=0.092  Sum_probs=54.6

Q ss_pred             CCCceEEEecCCCccccccCCccccccccccceeeccccCCCCC--CCCccccCcCccccCCcchhh----hhhcCCCCc
Q 048333           41 NTGHVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSS--EIPPEIINLSRLELQKPSFEN----LFEKLSNLK  114 (413)
Q Consensus        41 ~~~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~~L~~L~l~~~~i~~----~~~~~~~L~  114 (413)
                      ..+++++|++++|.+.+..+.  .+..+++|++|++++|.+...  .....+.+|+.|++.++.+..    .+..+++|+
T Consensus        79 ~l~~L~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  156 (606)
T 3t6q_A           79 SQHRLDTLVLTANPLIFMAET--ALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLK  156 (606)
T ss_dssp             TCTTCCEEECTTCCCSEECTT--TTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCC
T ss_pred             CccccCeeeCCCCcccccChh--hhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccC
Confidence            345667777777666554444  566666666666666655542  111233444445555443322    122355555


Q ss_pred             EEEcCCccCCCCcCccccCCCCCc--EEEccCCccc
Q 048333          115 TLNLGDVSIDSTIPHNIKNLSSLT--FVSLRNCELQ  148 (413)
Q Consensus       115 ~L~l~~~~~~~~~~~~~~~~~~L~--~L~l~~~~l~  148 (413)
                      +|++++|.+.+..+..+..+++|+  +|++++|.+.
T Consensus       157 ~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~  192 (606)
T 3t6q_A          157 VLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA  192 (606)
T ss_dssp             EEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCC
T ss_pred             EEEcccCcccccChhhhhhhcccceeEEecCCCccC
Confidence            555555555544444455555555  4555555443

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=1.9e-34  Score=262.57  Aligned_cols=272  Identities=24%  Similarity=0.390  Sum_probs=192.7

Q ss_pred             CCCCCCCCCCCCCCcc--cceEEeeCCC--CceEEEecCCCcccc--ccCCccccccccccceeeccc-cCCCCCCCCcc
Q 048333           17 TMASWKPEEGSVDCYS--WDVVHCNKNT--GHVIKLNLSHGCLFG--SINSSSSLFKLVHLKWLNLAL-NDFNSSEIPPE   89 (413)
Q Consensus        17 ~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~l~~L~l~~~~~~~--~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~   89 (413)
                      .+++|.+   +.+||.  |.||.|....  +++++|+++++.+.+  .++.  .+..+++|++|++++ |.+.+. +   
T Consensus        23 ~l~~W~~---~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~--~l~~l~~L~~L~L~~~n~l~~~-~---   93 (313)
T 1ogq_A           23 TLSSWLP---TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPS--SLANLPYLNFLYIGGINNLVGP-I---   93 (313)
T ss_dssp             GGTTCCT---TSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCG--GGGGCTTCSEEEEEEETTEESC-C---
T ss_pred             cccCCCC---CCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccCh--hHhCCCCCCeeeCCCCCccccc-C---
Confidence            6789987   788999  9999997543  789999999998887  5665  788888888888884 666543 3   


Q ss_pred             ccCcCccccCCcchhhhhhcCCCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCC
Q 048333           90 IINLSRLELQKPSFENLFEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNL  169 (413)
Q Consensus        90 ~~~L~~L~l~~~~i~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~  169 (413)
                                    |..+..+++|++|++++|.+.+.+|..+.++++|++|++++|.+.           +.+|..+..+
T Consensus        94 --------------p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~-----------~~~p~~~~~l  148 (313)
T 1ogq_A           94 --------------PPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALS-----------GTLPPSISSL  148 (313)
T ss_dssp             --------------CGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEE-----------SCCCGGGGGC
T ss_pred             --------------ChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccC-----------CcCChHHhcC
Confidence                          334667888888888888887777777888888888888888776           4566777777


Q ss_pred             CCccEEECCCCccccccccccccccccccccCCC-CccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccC
Q 048333          170 SKLLHLDLSLNELQGEAASFRCFGELPISMGNLG-SLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTG  248 (413)
Q Consensus       170 ~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~  248 (413)
                      ++|++|++++|.+++.         +|..+..++ .|+.|++++|.+...+|..+..+.                     
T Consensus       149 ~~L~~L~L~~N~l~~~---------~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~---------------------  198 (313)
T 1ogq_A          149 PNLVGITFDGNRISGA---------IPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN---------------------  198 (313)
T ss_dssp             TTCCEEECCSSCCEEE---------CCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC---------------------
T ss_pred             CCCCeEECcCCcccCc---------CCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc---------------------
Confidence            7777777777776633         455555555 666666666655544444444443                     


Q ss_pred             CCCCCcEEEecCCccccccchhhccCCCCCeEecCCcccCCcccccccCCCCCcEEEccCCcccccccccccCCCCCCEE
Q 048333          249 NFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVL  328 (413)
Q Consensus       249 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L  328 (413)
                          |+.|++++|.+.+..+..+..+++|+.|++++|.+....+ .+..+++|+.|++++|.+++..|..+..+++|+.|
T Consensus       199 ----L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  273 (313)
T 1ogq_A          199 ----LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSL  273 (313)
T ss_dssp             ----CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEE
T ss_pred             ----ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecC-cccccCCCCEEECcCCcccCcCChHHhcCcCCCEE
Confidence                4555555554444445555555666666666666553332 25566778888888888777777777788888888


Q ss_pred             ECCCCcCcceechhHhhhcccCCCeeeccCcc
Q 048333          329 DMAQNSYGGTVELDVLLTSWKNLEALDISLNR  360 (413)
Q Consensus       329 ~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~  360 (413)
                      ++++|.+.+.++   ....+++|+.+++++|+
T Consensus       274 ~Ls~N~l~~~ip---~~~~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          274 NVSFNNLCGEIP---QGGNLQRFDVSAYANNK  302 (313)
T ss_dssp             ECCSSEEEEECC---CSTTGGGSCGGGTCSSS
T ss_pred             ECcCCcccccCC---CCccccccChHHhcCCC
Confidence            888888877666   23677888888888887

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=9.5e-33  Score=280.05  Aligned_cols=337  Identities=16%  Similarity=0.217  Sum_probs=270.5

Q ss_pred             CCCceEEEecCCCcccc-----------------ccCCccccc--cccccceeeccccCCCCCCCCcccc---CcCcccc
Q 048333           41 NTGHVIKLNLSHGCLFG-----------------SINSSSSLF--KLVHLKWLNLALNDFNSSEIPPEII---NLSRLEL   98 (413)
Q Consensus        41 ~~~~l~~L~l~~~~~~~-----------------~~~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~---~L~~L~l   98 (413)
                      ..++++.|+|++|.+.+                 .+|.  .+.  .+++|++|++++|.+.+. +|..+.   +|+.|++
T Consensus       446 ~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~--~l~f~~L~~L~~L~Ls~N~l~~~-iP~~l~~L~~L~~L~L  522 (876)
T 4ecn_A          446 RLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENE--ELSWSNLKDLTDVELYNCPNMTQ-LPDFLYDLPELQSLNI  522 (876)
T ss_dssp             GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS--CCCGGGCTTCCEEEEESCTTCCS-CCGGGGGCSSCCEEEC
T ss_pred             cCCCCCEEECcCCcCCCCcccccccccccccccccCCh--hhhhccCCCCCEEECcCCCCCcc-ChHHHhCCCCCCEEEC
Confidence            56789999999999987                 2666  666  999999999999998876 776655   5666677


Q ss_pred             CCcc------hhhhhhcCC-------CCcEEEcCCccCCCCcCc--cccCCCCCcEEEccCCcccccchhhhhhcccCCC
Q 048333           99 QKPS------FENLFEKLS-------NLKTLNLGDVSIDSTIPH--NIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIP  163 (413)
Q Consensus        99 ~~~~------i~~~~~~~~-------~L~~L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~  163 (413)
                      ..+.      +|..+..++       +|++|++++|.+. .+|.  .+.++++|++|++++|.+.            .+|
T Consensus       523 s~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~------------~lp  589 (876)
T 4ecn_A          523 ACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR------------HLE  589 (876)
T ss_dssp             TTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC------------BCC
T ss_pred             cCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc------------cch
Confidence            7664      566565554       9999999999998 7888  8999999999999999986            456


Q ss_pred             ccccCCCCccEEECCCCccccccccccccccccccccCCCC-ccEEeCCCCcCCCcchhhhhCCC--CCCEEEccCCcCc
Q 048333          164 SSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGS-LKELDLSQNGFFGELPTSIRNLF--SLEKLDLSFNKLS  240 (413)
Q Consensus       164 ~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~l~~-L~~L~l~~~~~~~~~~~~l~~~~--~L~~L~l~~~~~~  240 (413)
                       .+..+++|+.|++++|.++          .+|..+..+++ |+.|++++|.+. .+|..+..++  +|+.|++++|.+.
T Consensus       590 -~~~~L~~L~~L~Ls~N~l~----------~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~  657 (876)
T 4ecn_A          590 -AFGTNVKLTDLKLDYNQIE----------EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIG  657 (876)
T ss_dssp             -CCCTTSEESEEECCSSCCS----------CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTT
T ss_pred             -hhcCCCcceEEECcCCccc----------cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCC
Confidence             7889999999999999988          26777888998 999999999987 6777776664  4999999999987


Q ss_pred             ccCCcc---cC--CCCCCcEEEecCCccccccchh-hccCCCCCeEecCCcccCCcccccc-cC-------CCCCcEEEc
Q 048333          241 GEFPWS---TG--NFSSLKLLNLRSCGFWSKVPHS-IGNFTRLQFLFLGFNNFSGDLLGSI-GN-------LRSLEVIYI  306 (413)
Q Consensus       241 ~~~~~~---l~--~~~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~l-~~-------~~~L~~L~L  306 (413)
                      +..|..   +.  ..++|+.|++++|.+. .+|.. +..+++|+.|++++|.+.. ++..+ ..       +++|+.|++
T Consensus       658 g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~-ip~~~~~~~~~~l~nl~~L~~L~L  735 (876)
T 4ecn_A          658 SEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMTS-IPENSLKPKDGNYKNTYLLTTIDL  735 (876)
T ss_dssp             TTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSC-CCTTSSSCTTSCCTTGGGCCEEEC
T ss_pred             CccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCCc-cChHHhccccccccccCCccEEEC
Confidence            654432   22  3458999999999996 45544 4588999999999999884 34333 22       239999999


Q ss_pred             cCCccccccccccc--CCCCCCEEECCCCcCcceechhHhhhcccCCCeeeccCccccccceeeecccccc-ccccceee
Q 048333          307 AKCNFSGQITSSLR--NLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDT-TSQKIQYR  383 (413)
Q Consensus       307 ~~~~~~~~~~~~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~-~~~~L~~L  383 (413)
                      ++|.++ .+|..+.  .+++|+.|++++|.+.+ ++ . .+..+++|+.|++++|+...-.......|..+ .+++|++|
T Consensus       736 s~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp-~-~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L  811 (876)
T 4ecn_A          736 RFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FP-T-QPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQL  811 (876)
T ss_dssp             CSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CC-C-GGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEE
T ss_pred             CCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cc-h-hhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEE
Confidence            999998 6777776  89999999999999987 34 2 57799999999998743111111444555555 78999999


Q ss_pred             eccCCCCCCcchHhhcCCCCcEEeCCCCCC
Q 048333          384 GLRSCNLTKFPNFLENQNHLVILNLSDNRI  413 (413)
Q Consensus       384 ~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i  413 (413)
                      ++++|.+..+|..+.  ++|+.|+|++|+|
T Consensus       812 ~Ls~N~L~~Ip~~l~--~~L~~LdLs~N~l  839 (876)
T 4ecn_A          812 QIGSNDIRKVDEKLT--PQLYILDIADNPN  839 (876)
T ss_dssp             ECCSSCCCBCCSCCC--SSSCEEECCSCTT
T ss_pred             ECCCCCCCccCHhhc--CCCCEEECCCCCC
Confidence            999999999998764  7999999999986

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=1.2e-32  Score=258.87  Aligned_cols=306  Identities=19%  Similarity=0.159  Sum_probs=226.4

Q ss_pred             CceEEEecCCCccccccCCccccccccccceeeccccCCCCCCCCccccCcCccccCCcchhhhhhcCCCCcEEEcCCcc
Q 048333           43 GHVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENLFEKLSNLKTLNLGDVS  122 (413)
Q Consensus        43 ~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~L~~L~l~~~~  122 (413)
                      ++++.++++++.+......  .+..+++|++|++++|.+...                  .+..+..+++|++|++++|.
T Consensus        45 ~~l~~l~l~~~~l~~l~~~--~~~~l~~L~~L~L~~n~i~~~------------------~~~~~~~l~~L~~L~L~~n~  104 (390)
T 3o6n_A           45 NNQKIVTFKNSTMRKLPAA--LLDSFRQVELLNLNDLQIEEI------------------DTYAFAYAHTIQKLYMGFNA  104 (390)
T ss_dssp             CCCSEEEEESCEESEECTH--HHHHCCCCSEEECTTSCCCEE------------------CTTTTTTCTTCCEEECCSSC
T ss_pred             CCceEEEecCCchhhCChh--HhcccccCcEEECCCCccccc------------------ChhhccCCCCcCEEECCCCC
Confidence            3445555555544322211  344555555555555544321                  12346778899999999998


Q ss_pred             CCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCc-cccCCCCccEEECCCCccccccccccccccccccccC
Q 048333          123 IDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPS-SLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGN  201 (413)
Q Consensus       123 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~-~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~  201 (413)
                      +.+..|..+..+++|++|++++|.+.            .+|. .+.++++|++|++++|.++..         .+..+..
T Consensus       105 l~~~~~~~~~~l~~L~~L~L~~n~l~------------~l~~~~~~~l~~L~~L~L~~n~l~~~---------~~~~~~~  163 (390)
T 3o6n_A          105 IRYLPPHVFQNVPLLTVLVLERNDLS------------SLPRGIFHNTPKLTTLSMSNNNLERI---------EDDTFQA  163 (390)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCC------------CCCTTTTTTCTTCCEEECCSSCCCBC---------CTTTTSS
T ss_pred             CCcCCHHHhcCCCCCCEEECCCCccC------------cCCHHHhcCCCCCcEEECCCCccCcc---------ChhhccC
Confidence            88777777888899999999998876            3343 357888999999999888754         3455778


Q ss_pred             CCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccCCCCCeEe
Q 048333          202 LGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLF  281 (413)
Q Consensus       202 l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  281 (413)
                      +++|++|++++|.+...   .+..+++|+.+++++|.+..     +...++|+.|++++|.+... +.  ...++|+.|+
T Consensus       164 l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~-----~~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~  232 (390)
T 3o6n_A          164 TTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVV-RG--PVNVELTILK  232 (390)
T ss_dssp             CTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSE-----EECCSSCSEEECCSSCCCEE-EC--CCCSSCCEEE
T ss_pred             CCCCCEEECCCCcCCcc---ccccccccceeecccccccc-----cCCCCcceEEECCCCeeeec-cc--cccccccEEE
Confidence            88999999998888643   25667889999998887653     23346789999999887433 32  2357899999


Q ss_pred             cCCcccCCcccccccCCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcceechhHhhhcccCCCeeeccCccc
Q 048333          282 LGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRS  361 (413)
Q Consensus       282 l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~i  361 (413)
                      +++|.+.+.  ..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.+...   ....+++|++|++++|.+
T Consensus       233 l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~l~~L~~L~L~~n~l  307 (390)
T 3o6n_A          233 LQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNL---YGQPIPTLKVLDLSHNHL  307 (390)
T ss_dssp             CCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEEC---SSSCCTTCCEEECCSSCC
T ss_pred             CCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCc---ccCCCCCCCEEECCCCcc
Confidence            999988753  567888999999999999987778888899999999999999876443   456788999999999987


Q ss_pred             cccceeeeccccccccccceeeeccCCCCCCcchHhhcCCCCcEEeCCCCCC
Q 048333          362 SVLTKATFDATTDTTSQKIQYRGLRSCNLTKFPNFLENQNHLVILNLSDNRI  413 (413)
Q Consensus       362 ~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i  413 (413)
                      +.++....      .+++|++|++++|.++.++  +..+++|+.|++++|++
T Consensus       308 ~~~~~~~~------~l~~L~~L~L~~N~i~~~~--~~~~~~L~~L~l~~N~~  351 (390)
T 3o6n_A          308 LHVERNQP------QFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHNDW  351 (390)
T ss_dssp             CCCGGGHH------HHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSSCE
T ss_pred             eecCcccc------ccCcCCEEECCCCccceeC--chhhccCCEEEcCCCCc
Confidence            65433221      5678999999999999776  67789999999999974

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=1.3e-31  Score=269.88  Aligned_cols=356  Identities=22%  Similarity=0.237  Sum_probs=203.4

Q ss_pred             CceEEEecCCCccccccCCccccccccccceeeccccCCCCCCCCc---cccCcCccccCCcch---hh-hhhcCCCCcE
Q 048333           43 GHVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPP---EIINLSRLELQKPSF---EN-LFEKLSNLKT  115 (413)
Q Consensus        43 ~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~~~i---~~-~~~~~~~L~~  115 (413)
                      +++++|++++|.+.+..+.  .+..+++|++|++++|.+... .+.   .+.+|+.|++.++.+   +. .++++++|++
T Consensus        25 ~~l~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~  101 (680)
T 1ziw_A           25 TNITVLNLTHNQLRRLPAA--NFTRYSQLTSLDVGFNTISKL-EPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTE  101 (680)
T ss_dssp             TTCSEEECCSSCCCCCCGG--GGGGGTTCSEEECCSSCCCCC-CTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSE
T ss_pred             CCCcEEECCCCCCCCcCHH--HHhCCCcCcEEECCCCccCcc-CHHHHhcccCcCEEECCCCccCccChhhhccCCCCCE
Confidence            4677777777776654443  567777777777777766654 333   244555566654433   22 3566677777


Q ss_pred             EEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCccccc----------
Q 048333          116 LNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGE----------  185 (413)
Q Consensus       116 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~----------  185 (413)
                      |++++|.+.+..+..+.++++|++|++++|.+..           ..+..+.++++|++|++++|.++..          
T Consensus       102 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-----------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~  170 (680)
T 1ziw_A          102 LHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS-----------TKLGTQVQLENLQELLLSNNKIQALKSEELDIFAN  170 (680)
T ss_dssp             EECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSC-----------CCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTT
T ss_pred             EECCCCccCccChhHccccCCCCEEECCCCcccc-----------cCchhhcccccCCEEEccCCcccccCHHHhhcccc
Confidence            7777776665555566667777777777766552           2233344444444444444443322          


Q ss_pred             ----------------ccc-cc-----------------------------------------ccccccccccCCC--Cc
Q 048333          186 ----------------AAS-FR-----------------------------------------CFGELPISMGNLG--SL  205 (413)
Q Consensus       186 ----------------~~~-~~-----------------------------------------~~~~~~~~~~~l~--~L  205 (413)
                                      .+. +.                                         ..+..|..+..++  +|
T Consensus       171 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L  250 (680)
T 1ziw_A          171 SSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNL  250 (680)
T ss_dssp             CEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCC
T ss_pred             ccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCC
Confidence                            110 00                                         0001122333332  36


Q ss_pred             cEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCcccc-----ccc----hhhccCCC
Q 048333          206 KELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWS-----KVP----HSIGNFTR  276 (413)
Q Consensus       206 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-----~~~----~~~~~~~~  276 (413)
                      ++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|+++++...+     ..|    ..+..+++
T Consensus       251 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~  330 (680)
T 1ziw_A          251 TMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKC  330 (680)
T ss_dssp             CEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTT
T ss_pred             CEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCC
Confidence            666666666655555566666777777777666654455445555555555554432211     111    13444555


Q ss_pred             CCeEecCCcccCCcccccccCCCCCcEEEc----------------------------cCCcccccccccccCCCCCCEE
Q 048333          277 LQFLFLGFNNFSGDLLGSIGNLRSLEVIYI----------------------------AKCNFSGQITSSLRNLTQLVVL  328 (413)
Q Consensus       277 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L----------------------------~~~~~~~~~~~~~~~~~~L~~L  328 (413)
                      |++|++++|.+.+..+..+..+++|+.|++                            ++|.+++..+..+..+++|+.|
T Consensus       331 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  410 (680)
T 1ziw_A          331 LEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVL  410 (680)
T ss_dssp             CCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             CCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEE
Confidence            566666655555444444444444444444                            4444444445566777888888


Q ss_pred             ECCCCcCcceechhHhhhcccCCCeeeccCccccccceee--------------------ecccccc-ccccceeeeccC
Q 048333          329 DMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTKAT--------------------FDATTDT-TSQKIQYRGLRS  387 (413)
Q Consensus       329 ~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~--------------------~~~~~~~-~~~~L~~L~l~~  387 (413)
                      ++++|.+.+..+.. .+.++++|++|++++|.+..+....                    ...+... .+++|++|++++
T Consensus       411 ~L~~N~l~~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~  489 (680)
T 1ziw_A          411 DLGLNEIGQELTGQ-EWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSN  489 (680)
T ss_dssp             ECCSSCCEEECCSG-GGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCS
T ss_pred             eCCCCcCccccCcc-cccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCC
Confidence            88888776555422 5677777788887777754432211                    1122223 677888899998


Q ss_pred             CCCCCcc-hHhhcCCCCcEEeCCCCCC
Q 048333          388 CNLTKFP-NFLENQNHLVILNLSDNRI  413 (413)
Q Consensus       388 ~~l~~l~-~~~~~l~~L~~L~l~~n~i  413 (413)
                      |.++.+| ..+.++++|+.|++++|++
T Consensus       490 N~l~~i~~~~~~~l~~L~~L~Ls~N~l  516 (680)
T 1ziw_A          490 NNIANINDDMLEGLEKLEILDLQHNNL  516 (680)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CCCCcCChhhhccccccCEEeCCCCCc
Confidence            8888665 4578889999999988875

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=1.1e-32  Score=270.93  Aligned_cols=348  Identities=20%  Similarity=0.214  Sum_probs=205.4

Q ss_pred             CceEEEecCCCccccccCCccccccccccceeeccccCCCCCCCCc---cccCcCccccCCcch----hhhhhcCCCCcE
Q 048333           43 GHVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPP---EIINLSRLELQKPSF----ENLFEKLSNLKT  115 (413)
Q Consensus        43 ~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~~~i----~~~~~~~~~L~~  115 (413)
                      +++++|++++|.+.+..+.  .+..+++|++|++++|++... .+.   .+.+|+.|++..+.+    +..++.+++|++
T Consensus        26 ~~L~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  102 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIGHG--DLRACANLQVLILKSSRINTI-EGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKY  102 (549)
T ss_dssp             TTCCEEECCSSCCCEECSS--TTSSCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCE
T ss_pred             CCccEEECcCCccCccChh--hhhcCCcccEEECCCCCcCcc-ChhhccccccCCEEECCCCccCccCHHHhccCCCCcE
Confidence            5899999999998876666  899999999999999988764 333   455677778876655    345889999999


Q ss_pred             EEcCCccCCC-CcCccccCCCCCcEEEccCCcccccchhhhhhcccCCC-ccccCCCCccEEECCCCcccccccc-ccc-
Q 048333          116 LNLGDVSIDS-TIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIP-SSLGNLSKLLHLDLSLNELQGEAAS-FRC-  191 (413)
Q Consensus       116 L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~-~~l~~~~~L~~L~l~~~~i~~~~~~-~~~-  191 (413)
                      |++++|.+.+ ..|..+.++++|++|++++|.+.           +.++ ..+.++++|++|++++|.+++..+. +.. 
T Consensus       103 L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~-----------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l  171 (549)
T 2z81_A          103 LNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETF-----------SEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSI  171 (549)
T ss_dssp             EECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSC-----------CEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTC
T ss_pred             EECCCCcccccchhhhhhccCCccEEECCCCccc-----------cccCHhhhhcccccCeeeccCCcccccChhhhhcc
Confidence            9999999875 35677899999999999999743           2233 4677788888888888887754221 100 


Q ss_pred             ------------ccccccc-ccCCCCccEEeCCCCcCCCcc--h-----------------------------hhhhCCC
Q 048333          192 ------------FGELPIS-MGNLGSLKELDLSQNGFFGEL--P-----------------------------TSIRNLF  227 (413)
Q Consensus       192 ------------~~~~~~~-~~~l~~L~~L~l~~~~~~~~~--~-----------------------------~~l~~~~  227 (413)
                                  .+.+|.. +..+++|+.|++++|.+....  +                             ..+..++
T Consensus       172 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~  251 (549)
T 2z81_A          172 RDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYIL  251 (549)
T ss_dssp             SEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCT
T ss_pred             ccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhc
Confidence                        0011111 123566666666666554310  0                             0001111


Q ss_pred             CCCE-----------------------------------------------------------EEccCCcCcccCCccc-
Q 048333          228 SLEK-----------------------------------------------------------LDLSFNKLSGEFPWST-  247 (413)
Q Consensus       228 ~L~~-----------------------------------------------------------L~l~~~~~~~~~~~~l-  247 (413)
                      +|+.                                                           |++++|.+. .+|..+ 
T Consensus       252 ~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~  330 (549)
T 2z81_A          252 ELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFS  330 (549)
T ss_dssp             TCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHH
T ss_pred             cccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHH
Confidence            1111                                                           112111111 111111 


Q ss_pred             CCCCCCcEEEecCCccccccch---hhccCCCCCeEecCCcccCCccc--ccccCCCCCcEEEccCCcccccccccccCC
Q 048333          248 GNFSSLKLLNLRSCGFWSKVPH---SIGNFTRLQFLFLGFNNFSGDLL--GSIGNLRSLEVIYIAKCNFSGQITSSLRNL  322 (413)
Q Consensus       248 ~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~--~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~  322 (413)
                      ..+++|++|++++|.+.+..+.   .+..+++|++|++++|.+.+...  ..+..+++|+.|++++|.++ .+|..+..+
T Consensus       331 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~  409 (549)
T 2z81_A          331 QHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWP  409 (549)
T ss_dssp             HHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCC
T ss_pred             hcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhccc
Confidence            1344555555555554333221   13444555555555555543211  23444555555555555554 344444445


Q ss_pred             CCCCEEECCCCcCcceech---------------hHhhhcccCCCeeeccCccccccceeeeccccccccccceeeeccC
Q 048333          323 TQLVVLDMAQNSYGGTVEL---------------DVLLTSWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRS  387 (413)
Q Consensus       323 ~~L~~L~l~~n~~~~~~~~---------------~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~L~~L~l~~  387 (413)
                      ++|++|++++|.+......               ......+++|++|++++|.++.++..       ..+++|++|++++
T Consensus       410 ~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~~ip~~-------~~l~~L~~L~Ls~  482 (549)
T 2z81_A          410 EKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPDA-------SLFPVLLVMKISR  482 (549)
T ss_dssp             TTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCG-------GGCTTCCEEECCS
T ss_pred             ccccEEECCCCCcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccCcCCCc-------ccCccCCEEecCC
Confidence            5555555555544321110               00112566777777777776554431       2467888888888


Q ss_pred             CCCCCcc-hHhhcCCCCcEEeCCCCCC
Q 048333          388 CNLTKFP-NFLENQNHLVILNLSDNRI  413 (413)
Q Consensus       388 ~~l~~l~-~~~~~l~~L~~L~l~~n~i  413 (413)
                      |+++.+| ..+..+++|+.|++++|++
T Consensus       483 N~l~~~~~~~~~~l~~L~~L~l~~N~~  509 (549)
T 2z81_A          483 NQLKSVPDGIFDRLTSLQKIWLHTNPW  509 (549)
T ss_dssp             SCCCCCCTTGGGGCTTCCEEECCSSCB
T ss_pred             CccCCcCHHHHhcCcccCEEEecCCCc
Confidence            8888554 4578888999999988874

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=2.7e-32  Score=263.35  Aligned_cols=303  Identities=18%  Similarity=0.157  Sum_probs=199.3

Q ss_pred             CCceEEEecCCCccccccCCccccccccccceeeccccCCCCCCCCccccCcCccccCCcchhhhhhcCCCCcEEEcCCc
Q 048333           42 TGHVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENLFEKLSNLKTLNLGDV  121 (413)
Q Consensus        42 ~~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~L~~L~l~~~  121 (413)
                      ..+++.|++++|.+.+..+.  .+..+++|++|++++|.+... .                 +..+..+++|++|++++|
T Consensus        31 ~~~l~~L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~i~~~-~-----------------~~~~~~l~~L~~L~L~~n   90 (477)
T 2id5_A           31 PTETRLLDLGKNRIKTLNQD--EFASFPHLEELELNENIVSAV-E-----------------PGAFNNLFNLRTLGLRSN   90 (477)
T ss_dssp             CTTCSEEECCSSCCCEECTT--TTTTCTTCCEEECTTSCCCEE-C-----------------TTTTTTCTTCCEEECCSS
T ss_pred             CCCCcEEECCCCccceECHh--HccCCCCCCEEECCCCccCEe-C-----------------hhhhhCCccCCEEECCCC
Confidence            34678888888877765555  777888888888888766543 1                 234556677777777777


Q ss_pred             cCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCccccccccccccccccccccC
Q 048333          122 SIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGN  201 (413)
Q Consensus       122 ~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~  201 (413)
                      .+....+..+.++++|++|++++|.+.           +..+..+.++++|+.|++++|.+...         .+..+..
T Consensus        91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~-----------~~~~~~~~~l~~L~~L~l~~n~l~~~---------~~~~~~~  150 (477)
T 2id5_A           91 RLKLIPLGVFTGLSNLTKLDISENKIV-----------ILLDYMFQDLYNLKSLEVGDNDLVYI---------SHRAFSG  150 (477)
T ss_dssp             CCCSCCTTSSTTCTTCCEEECTTSCCC-----------EECTTTTTTCTTCCEEEECCTTCCEE---------CTTSSTT
T ss_pred             cCCccCcccccCCCCCCEEECCCCccc-----------cCChhHccccccCCEEECCCCcccee---------ChhhccC
Confidence            776554455667777777777777765           23445566777777777777766643         2345666


Q ss_pred             CCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccCCCCCeEe
Q 048333          202 LGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLF  281 (413)
Q Consensus       202 l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  281 (413)
                      +++|++|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|...+..+.......+|+.|+
T Consensus       151 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  230 (477)
T 2id5_A          151 LNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLS  230 (477)
T ss_dssp             CTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEE
T ss_pred             CCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEE
Confidence            77777777777777655555667777777777777776655555666677777777777665555555555555777777


Q ss_pred             cCCcccCCcccccccCCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcceechhHhhhcccCCCeeeccCccc
Q 048333          282 LGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRS  361 (413)
Q Consensus       282 l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~i  361 (413)
                      +++|.+.......+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.+..+ . .+..+++|++|++++|.+
T Consensus       231 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~-~~~~l~~L~~L~L~~N~l  308 (477)
T 2id5_A          231 ITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEP-Y-AFRGLNYLRVLNVSGNQL  308 (477)
T ss_dssp             EESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECT-T-TBTTCTTCCEEECCSSCC
T ss_pred             CcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECH-H-HhcCcccCCEEECCCCcC
Confidence            77777665444556667777777777777765555566677777777777777665433 2 566677777777777775


Q ss_pred             cccceeeeccccccccccceeeeccCCCCC
Q 048333          362 SVLTKATFDATTDTTSQKIQYRGLRSCNLT  391 (413)
Q Consensus       362 ~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~  391 (413)
                      +.+++..+.     .+++|++|++++|.+.
T Consensus       309 ~~~~~~~~~-----~l~~L~~L~l~~N~l~  333 (477)
T 2id5_A          309 TTLEESVFH-----SVGNLETLILDSNPLA  333 (477)
T ss_dssp             SCCCGGGBS-----CGGGCCEEECCSSCEE
T ss_pred             ceeCHhHcC-----CCcccCEEEccCCCcc
Confidence            554332211     3556777777777655

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=2.9e-31  Score=245.56  Aligned_cols=303  Identities=21%  Similarity=0.278  Sum_probs=246.5

Q ss_pred             CCCceEEEecCCCccccccCCccccccccccceeeccccCCCCCCCCccccCcCccccCCcchhhhhhcCCCCcEEEcCC
Q 048333           41 NTGHVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENLFEKLSNLKTLNLGD  120 (413)
Q Consensus        41 ~~~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~L~~L~l~~  120 (413)
                      ..+++++|+++++.+...  +  .+..+++|++|++++|.+...                   +. +..+++|++|++++
T Consensus        42 ~l~~L~~L~l~~~~i~~~--~--~~~~~~~L~~L~l~~n~i~~~-------------------~~-~~~l~~L~~L~L~~   97 (347)
T 4fmz_A           42 ELESITKLVVAGEKVASI--Q--GIEYLTNLEYLNLNGNQITDI-------------------SP-LSNLVKLTNLYIGT   97 (347)
T ss_dssp             HHTTCSEEECCSSCCCCC--T--TGGGCTTCCEEECCSSCCCCC-------------------GG-GTTCTTCCEEECCS
T ss_pred             hcccccEEEEeCCccccc--h--hhhhcCCccEEEccCCccccc-------------------hh-hhcCCcCCEEEccC
Confidence            456889999999877542  2  578899999999998877643                   12 67799999999999


Q ss_pred             ccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCcccccccccccccccccccc
Q 048333          121 VSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMG  200 (413)
Q Consensus       121 ~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~  200 (413)
                      |.+.. ++ .+..+++|++|++++|.+..            ++. +..+++|+.|++++|.....          +..+.
T Consensus        98 n~i~~-~~-~~~~l~~L~~L~l~~n~i~~------------~~~-~~~l~~L~~L~l~~n~~~~~----------~~~~~  152 (347)
T 4fmz_A           98 NKITD-IS-ALQNLTNLRELYLNEDNISD------------ISP-LANLTKMYSLNLGANHNLSD----------LSPLS  152 (347)
T ss_dssp             SCCCC-CG-GGTTCTTCSEEECTTSCCCC------------CGG-GTTCTTCCEEECTTCTTCCC----------CGGGT
T ss_pred             CcccC-ch-HHcCCCcCCEEECcCCcccC------------chh-hccCCceeEEECCCCCCccc----------ccchh
Confidence            99875 43 58899999999999999873            333 78899999999999964432          23478


Q ss_pred             CCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccCCCCCeE
Q 048333          201 NLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFL  280 (413)
Q Consensus       201 ~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  280 (413)
                      .+++|+.|++++|.+.... . +..+++|+.|++++|.+... +. +..+++|+.+++++|.+.+..+  +..+++|++|
T Consensus       153 ~l~~L~~L~l~~~~~~~~~-~-~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L  226 (347)
T 4fmz_A          153 NMTGLNYLTVTESKVKDVT-P-IANLTDLYSLSLNYNQIEDI-SP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSL  226 (347)
T ss_dssp             TCTTCCEEECCSSCCCCCG-G-GGGCTTCSEEECTTSCCCCC-GG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEE
T ss_pred             hCCCCcEEEecCCCcCCch-h-hccCCCCCEEEccCCccccc-cc-ccCCCccceeecccCCCCCCch--hhcCCcCCEE
Confidence            8999999999999986433 3 78999999999999988743 33 7788999999999998855443  7889999999


Q ss_pred             ecCCcccCCcccccccCCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcceechhHhhhcccCCCeeeccCcc
Q 048333          281 FLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNR  360 (413)
Q Consensus       281 ~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~  360 (413)
                      ++++|.+.+..+  +..+++|+.|++++|.+++.  ..+..+++|+.|++++|.+.+. +   .+..+++|++|++++|.
T Consensus       227 ~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~-~---~~~~l~~L~~L~L~~n~  298 (347)
T 4fmz_A          227 KIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI-S---VLNNLSQLNSLFLNNNQ  298 (347)
T ss_dssp             ECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC-G---GGGGCTTCSEEECCSSC
T ss_pred             EccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC-h---hhcCCCCCCEEECcCCc
Confidence            999999985433  88899999999999998743  4678899999999999998864 3   57889999999999999


Q ss_pred             ccccceeeecccccc-ccccceeeeccCCCCCCcchHhhcCCCCcEEeCCCCCC
Q 048333          361 SSVLTKATFDATTDT-TSQKIQYRGLRSCNLTKFPNFLENQNHLVILNLSDNRI  413 (413)
Q Consensus       361 i~~l~~~~~~~~~~~-~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i  413 (413)
                      ++...      +..+ .+++|++|++++|.++.++. +..+++|+.|++++|+|
T Consensus       299 l~~~~------~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~N~i  345 (347)
T 4fmz_A          299 LGNED------MEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFANQVI  345 (347)
T ss_dssp             CCGGG------HHHHHTCTTCSEEECCSSSCCCCGG-GGGCTTCSEESSSCC--
T ss_pred             CCCcC------hhHhhccccCCEEEccCCccccccC-hhhhhccceeehhhhcc
Confidence            65432      2223 67899999999999997766 88999999999999986

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=6e-32  Score=266.88  Aligned_cols=156  Identities=23%  Similarity=0.253  Sum_probs=94.3

Q ss_pred             CCCCCcEEEecCCccccccchhhccCCCCCeEecCCcccCCccc-ccccCCCCCcEEEccCCcccccccccccCCCCCCE
Q 048333          249 NFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLL-GSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVV  327 (413)
Q Consensus       249 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~  327 (413)
                      .+++|++|++++|.+.+..+ .+..+++|++|++++|.+....+ ..+..+++|+.|++++|.+.+..+..+..+++|+.
T Consensus       371 ~~~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  449 (570)
T 2z63_A          371 GTTSLKYLDLSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV  449 (570)
T ss_dssp             TCSCCCEEECCSCSEEEEEE-EEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCE
T ss_pred             ccCccCEEECCCCccccccc-cccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcE
Confidence            34444444444444422222 24455555555555555543322 34555666666666666666555666666777777


Q ss_pred             EECCCCcCc-ceechhHhhhcccCCCeeeccCccccccceeeecccccc-ccccceeeeccCCCCCCcc-hHhhcCCCCc
Q 048333          328 LDMAQNSYG-GTVELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDT-TSQKIQYRGLRSCNLTKFP-NFLENQNHLV  404 (413)
Q Consensus       328 L~l~~n~~~-~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~-~~~~L~~L~l~~~~l~~l~-~~~~~l~~L~  404 (413)
                      |++++|.+. +..+ . .+..+++|++|++++|.++.      ..+..+ .+++|++|++++|+++.+| ..+.++++|+
T Consensus       450 L~l~~n~l~~~~~p-~-~~~~l~~L~~L~l~~n~l~~------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  521 (570)
T 2z63_A          450 LKMAGNSFQENFLP-D-IFTELRNLTFLDLSQCQLEQ------LSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQ  521 (570)
T ss_dssp             EECTTCEEGGGEEC-S-CCTTCTTCCEEECTTSCCCE------ECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred             EECcCCcCccccch-h-hhhcccCCCEEECCCCcccc------CChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCc
Confidence            777777665 2333 2 56667777777777777433      223233 5678888888888888555 4577888888


Q ss_pred             EEeCCCCCC
Q 048333          405 ILNLSDNRI  413 (413)
Q Consensus       405 ~L~l~~n~i  413 (413)
                      .|++++|++
T Consensus       522 ~L~l~~N~~  530 (570)
T 2z63_A          522 KIWLHTNPW  530 (570)
T ss_dssp             EEECCSSCB
T ss_pred             EEEecCCcc
Confidence            888888864

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=5.7e-32  Score=264.00  Aligned_cols=87  Identities=23%  Similarity=0.269  Sum_probs=71.6

Q ss_pred             hhhhhcCCCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCccc
Q 048333          104 ENLFEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQ  183 (413)
Q Consensus       104 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~  183 (413)
                      +..+..+++|++|++++|.++ .+|..  .+++|++|++++|.++.+          .+|..++++++|++|++++|.++
T Consensus        62 ~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~----------~~p~~~~~l~~L~~L~L~~n~l~  128 (520)
T 2z7x_B           62 ISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDLSFNAFDAL----------PICKEFGNMSQLKFLGLSTTHLE  128 (520)
T ss_dssp             GGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEECCSSCCSSC----------CCCGGGGGCTTCCEEEEEESSCC
T ss_pred             hHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEeccCCccccc----------cchhhhccCCcceEEEecCcccc
Confidence            456888999999999999997 56665  799999999999998731          46788999999999999999987


Q ss_pred             cccccccccccccccccCCCCc--cEEeCCCCcC
Q 048333          184 GEAASFRCFGELPISMGNLGSL--KELDLSQNGF  215 (413)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~l~~L--~~L~l~~~~~  215 (413)
                      ..            .+..+++|  +.|++++|.+
T Consensus       129 ~~------------~~~~l~~L~L~~L~l~~n~l  150 (520)
T 2z7x_B          129 KS------------SVLPIAHLNISKVLLVLGET  150 (520)
T ss_dssp             GG------------GGGGGTTSCEEEEEEEECTT
T ss_pred             hh------------hccccccceeeEEEeecccc
Confidence            42            34556677  9999999887

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=2e-32  Score=267.15  Aligned_cols=341  Identities=20%  Similarity=0.233  Sum_probs=225.2

Q ss_pred             CceEEEecCCCccccccCCccccccccccceeeccccCCCCCCCCcc---ccCcCccccCCcchhhh-hhcCCCCcEEEc
Q 048333           43 GHVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPPE---IINLSRLELQKPSFENL-FEKLSNLKTLNL  118 (413)
Q Consensus        43 ~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~---~~~L~~L~l~~~~i~~~-~~~~~~L~~L~l  118 (413)
                      +++++|++++|.+.+..+.  .+..+++|++|++++|++... .+..   +.+|+.|++..+.+... ...+++|++|++
T Consensus        21 ~~L~~L~Ls~n~i~~~~~~--~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~lp~~~l~~L~~L~L   97 (520)
T 2z7x_B           21 QKTTILNISQNYISELWTS--DILSLSKLRILIISHNRIQYL-DISVFKFNQELEYLDLSHNKLVKISCHPTVNLKHLDL   97 (520)
T ss_dssp             TTCSEEECCSSCCCCCCHH--HHTTCTTCCEEECCSSCCCEE-EGGGGTTCTTCCEEECCSSCCCEEECCCCCCCSEEEC
T ss_pred             ccccEEECCCCcccccChh--hccccccccEEecCCCccCCc-ChHHhhcccCCCEEecCCCceeecCccccCCccEEec
Confidence            6899999999998766555  789999999999999988764 3443   45677777886666432 117899999999


Q ss_pred             CCccCCC-CcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCc--cEEECCCCcc--ccccc-ccccc
Q 048333          119 GDVSIDS-TIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKL--LHLDLSLNEL--QGEAA-SFRCF  192 (413)
Q Consensus       119 ~~~~~~~-~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L--~~L~l~~~~i--~~~~~-~~~~~  192 (413)
                      ++|.+.+ .+|..++++++|++|++++|.+..              ..+..+++|  +.|++++|.+  ....+ .+...
T Consensus        98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--------------~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l  163 (520)
T 2z7x_B           98 SFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--------------SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDF  163 (520)
T ss_dssp             CSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--------------GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTC
T ss_pred             cCCccccccchhhhccCCcceEEEecCcccch--------------hhccccccceeeEEEeeccccccccccccccccc
Confidence            9999986 478899999999999999998862              335566677  9999999988  43322 11100


Q ss_pred             ---------------cccc-ccccCCC-----------------------------------------------------
Q 048333          193 ---------------GELP-ISMGNLG-----------------------------------------------------  203 (413)
Q Consensus       193 ---------------~~~~-~~~~~l~-----------------------------------------------------  203 (413)
                                     +.++ ..+..++                                                     
T Consensus       164 ~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~  243 (520)
T 2z7x_B          164 NTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQL  243 (520)
T ss_dssp             CEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHH
T ss_pred             ccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHH
Confidence                           0000 0111222                                                     


Q ss_pred             ----CccEEeCCCCcCCCcchhhh-----hCCCCC--------------------------CEEEccCCcCcccCCcccC
Q 048333          204 ----SLKELDLSQNGFFGELPTSI-----RNLFSL--------------------------EKLDLSFNKLSGEFPWSTG  248 (413)
Q Consensus       204 ----~L~~L~l~~~~~~~~~~~~l-----~~~~~L--------------------------~~L~l~~~~~~~~~~~~l~  248 (413)
                          +|++|++++|.+.+.+|..+     ..+++|                          +.|++++|.+... + ...
T Consensus       244 ~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~-~-~~~  321 (520)
T 2z7x_B          244 VWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHM-L-CPS  321 (520)
T ss_dssp             HHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCC-C-CCS
T ss_pred             hhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccc-c-chh
Confidence                33444444443332333333     223222                          2222222222110 0 014


Q ss_pred             CCCCCcEEEecCCccccccchhhccCCCCCeEecCCcccCC--cccccccCCCCCcEEEccCCcccccccc-cccCCCCC
Q 048333          249 NFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSG--DLLGSIGNLRSLEVIYIAKCNFSGQITS-SLRNLTQL  325 (413)
Q Consensus       249 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~L~~~~~~~~~~~-~~~~~~~L  325 (413)
                      .+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+  ..+..+..+++|+.|++++|.+++.+|. .+..+++|
T Consensus       322 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L  401 (520)
T 2z7x_B          322 KISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSL  401 (520)
T ss_dssp             SCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTC
T ss_pred             hCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccC
Confidence            56677777777777766666667777777777777777764  3345566777777777777777753443 46667777


Q ss_pred             CEEECCCCcCcceechhHhhhcc-cCCCeeeccCccccccceeeeccccccccccceeeeccCCCCCCcchH-hhcCCCC
Q 048333          326 VVLDMAQNSYGGTVELDVLLTSW-KNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLTKFPNF-LENQNHL  403 (413)
Q Consensus       326 ~~L~l~~n~~~~~~~~~~~~~~~-~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~-~~~l~~L  403 (413)
                      +.|++++|.+.+..+     ..+ ++|++|++++|.++.++...+      .+++|++|++++|+++.+|.. +..+++|
T Consensus       402 ~~L~Ls~N~l~~~~~-----~~l~~~L~~L~Ls~N~l~~ip~~~~------~l~~L~~L~L~~N~l~~l~~~~~~~l~~L  470 (520)
T 2z7x_B          402 LSLNMSSNILTDTIF-----RCLPPRIKVLDLHSNKIKSIPKQVV------KLEALQELNVASNQLKSVPDGIFDRLTSL  470 (520)
T ss_dssp             CEEECCSSCCCGGGG-----GSCCTTCCEEECCSSCCCCCCGGGG------GCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             CEEECcCCCCCcchh-----hhhcccCCEEECCCCcccccchhhh------cCCCCCEEECCCCcCCccCHHHhccCCcc
Confidence            788887777764333     122 578888888887654433222      567888999999988888876 7888899


Q ss_pred             cEEeCCCCCC
Q 048333          404 VILNLSDNRI  413 (413)
Q Consensus       404 ~~L~l~~n~i  413 (413)
                      +.|++++|++
T Consensus       471 ~~L~l~~N~~  480 (520)
T 2z7x_B          471 QKIWLHTNPW  480 (520)
T ss_dssp             CEEECCSSCB
T ss_pred             cEEECcCCCC
Confidence            9999988875

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=6.3e-32  Score=267.49  Aligned_cols=332  Identities=19%  Similarity=0.164  Sum_probs=239.1

Q ss_pred             CCCCCCCCCCCCCCCCcc----cceEEeeC----------------CCCceEEEecCCCccccccCCcccccccccccee
Q 048333           15 RPTMASWKPEEGSVDCYS----WDVVHCNK----------------NTGHVIKLNLSHGCLFGSINSSSSLFKLVHLKWL   74 (413)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~----~~~~~~~~----------------~~~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L   74 (413)
                      .-.+++|.+   +.+||.    |.++.|..                ...+++.++++++.+....+.  .+..+++|++|
T Consensus         6 ~~~l~~~~~---~~~C~~~~~~~~c~~~~~~i~~~~~~~~~~~~~l~l~~l~~l~l~~~~l~~lp~~--~~~~l~~L~~L   80 (597)
T 3oja_B            6 RYNVKPRQP---EYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAA--LLDSFRQVELL   80 (597)
T ss_dssp             -----CCCS---EECCCCC--CCSEEECSCEECSSCCCCEESCSSGGGCCCSEEEESSCEESEECTH--HHHHCCCCSEE
T ss_pred             cccccCCCC---CCcCcccCcCceeEecCceecccccccccCcccccCCCceEEEeeCCCCCCcCHH--HHccCCCCcEE
Confidence            345577876   566664    66655531                113456666666655433222  45566677777


Q ss_pred             eccccCCCCCCCCccccCcCccccCCcchhhhhhcCCCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhh
Q 048333           75 NLALNDFNSSEIPPEIINLSRLELQKPSFENLFEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFF  154 (413)
Q Consensus        75 ~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~  154 (413)
                      ++++|.+... .                 +..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+..     
T Consensus        81 ~L~~n~l~~~-~-----------------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-----  137 (597)
T 3oja_B           81 NLNDLQIEEI-D-----------------TYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS-----  137 (597)
T ss_dssp             ECTTSCCCEE-C-----------------TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-----
T ss_pred             ECCCCCCCCC-C-----------------hHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCC-----
Confidence            7776665532 1                 2346778889999999888887777778888999999999888762     


Q ss_pred             hhhcccCCCccccCCCCccEEECCCCccccccccccccccccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEc
Q 048333          155 LIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDL  234 (413)
Q Consensus       155 ~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l  234 (413)
                            ..+..+.++++|++|++++|.++..         .|..+..+++|+.|++++|.+...   .+..+++|+.|++
T Consensus       138 ------l~~~~~~~l~~L~~L~Ls~N~l~~~---------~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l  199 (597)
T 3oja_B          138 ------LPRGIFHNTPKLTTLSMSNNNLERI---------EDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANV  199 (597)
T ss_dssp             ------CCTTTTTTCTTCCEEECCSSCCCBC---------CTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEEC
T ss_pred             ------CCHHHhccCCCCCEEEeeCCcCCCC---------ChhhhhcCCcCcEEECcCCCCCCc---Chhhhhhhhhhhc
Confidence                  2233457888899999998888754         445678888899999988887643   2556788888988


Q ss_pred             cCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccCCCCCeEecCCcccCCcccccccCCCCCcEEEccCCccccc
Q 048333          235 SFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQ  314 (413)
Q Consensus       235 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~  314 (413)
                      ++|.+..     +...++|+.|++++|.+....+.   ..++|+.|++++|.+.+  +..+..+++|+.|++++|.+++.
T Consensus       200 ~~n~l~~-----l~~~~~L~~L~ls~n~l~~~~~~---~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~  269 (597)
T 3oja_B          200 SYNLLST-----LAIPIAVEELDASHNSINVVRGP---VNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKI  269 (597)
T ss_dssp             CSSCCSE-----EECCTTCSEEECCSSCCCEEECS---CCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEE
T ss_pred             ccCcccc-----ccCCchhheeeccCCcccccccc---cCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCC
Confidence            8887653     23446788999988887433222   23689999999998875  46677889999999999999877


Q ss_pred             ccccccCCCCCCEEECCCCcCcceechhHhhhcccCCCeeeccCccccccceeeeccccccccccceeeeccCCCCCCcc
Q 048333          315 ITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLTKFP  394 (413)
Q Consensus       315 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~  394 (413)
                      .|..+..+++|+.|++++|.+.+...   ....+++|++|++++|.++.++....      .+++|++|++++|.++.+|
T Consensus       270 ~~~~~~~l~~L~~L~Ls~N~l~~l~~---~~~~l~~L~~L~Ls~N~l~~i~~~~~------~l~~L~~L~L~~N~l~~~~  340 (597)
T 3oja_B          270 MYHPFVKMQRLERLYISNNRLVALNL---YGQPIPTLKVLDLSHNHLLHVERNQP------QFDRLENLYLDHNSIVTLK  340 (597)
T ss_dssp             ESGGGTTCSSCCEEECTTSCCCEEEC---SSSCCTTCCEEECCSSCCCCCGGGHH------HHTTCSEEECCSSCCCCCC
T ss_pred             CHHHhcCccCCCEEECCCCCCCCCCc---ccccCCCCcEEECCCCCCCccCcccc------cCCCCCEEECCCCCCCCcC
Confidence            78888899999999999998886443   45678899999999998665432221      5778999999999998776


Q ss_pred             hHhhcCCCCcEEeCCCCCC
Q 048333          395 NFLENQNHLVILNLSDNRI  413 (413)
Q Consensus       395 ~~~~~l~~L~~L~l~~n~i  413 (413)
                        +..+++|+.|++++|++
T Consensus       341 --~~~~~~L~~L~l~~N~~  357 (597)
T 3oja_B          341 --LSTHHTLKNLTLSHNDW  357 (597)
T ss_dssp             --CCTTCCCSEEECCSSCE
T ss_pred             --hhhcCCCCEEEeeCCCC
Confidence              66789999999999874

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=2.5e-32  Score=280.67  Aligned_cols=343  Identities=20%  Similarity=0.238  Sum_probs=248.6

Q ss_pred             ccceEEeeCCCCceEEEecCCCccccccCCccccccccccceeeccccCCCCCCC-Cc---cccCcCccccCCcch----
Q 048333           32 SWDVVHCNKNTGHVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEI-PP---EIINLSRLELQKPSF----  103 (413)
Q Consensus        32 ~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~---~~~~L~~L~l~~~~i----  103 (413)
                      .|..|-+  .++++++|+|++|.+....+.  .+..+++|++|++++|..... + +.   .+.+|+.|++.++.+    
T Consensus        15 ~L~~vP~--lp~~l~~LdLs~N~i~~i~~~--~~~~l~~L~~LdLs~n~~~~~-i~~~~f~~L~~L~~L~Ls~N~l~~~~   89 (844)
T 3j0a_A           15 NLTQVPQ--VLNTTERLLLSFNYIRTVTAS--SFPFLEQLQLLELGSQYTPLT-IDKEAFRNLPNLRILDLGSSKIYFLH   89 (844)
T ss_dssp             CSSCCCS--SCTTCCEEEEESCCCCEECSS--SCSSCCSCSEEEECTTCCCCE-ECTTTTSSCTTCCEEECTTCCCCEEC
T ss_pred             CCCCCCC--CCCCcCEEECCCCcCCccChh--HCcccccCeEEeCCCCCCccc-cCHHHhcCCCCCCEEECCCCcCcccC
Confidence            3444433  567999999999999877666  899999999999999965443 3 33   344566667765554    


Q ss_pred             hhhhhcCCCCcEEEcCCccCCCCcCcc--ccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCc
Q 048333          104 ENLFEKLSNLKTLNLGDVSIDSTIPHN--IKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNE  181 (413)
Q Consensus       104 ~~~~~~~~~L~~L~l~~~~~~~~~~~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~  181 (413)
                      +..++++++|++|++++|.+.+.++..  +.++++|++|++++|.+..+          ..+..+.++++|+.|++++|.
T Consensus        90 p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~----------~~~~~~~~L~~L~~L~Ls~N~  159 (844)
T 3j0a_A           90 PDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSL----------YLHPSFGKLNSLKSIDFSSNQ  159 (844)
T ss_dssp             TTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCC----------CCCGGGGTCSSCCEEEEESSC
T ss_pred             HhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCccccc----------ccchhHhhCCCCCEEECCCCc
Confidence            556778888888888888887655544  77888888888888887631          223567888888888888888


Q ss_pred             cccccccccccccccccccCC--CCccEEeCCCCcCCCcchhhhhCCCC------CCEEEccCCcCcccCCcccC-----
Q 048333          182 LQGEAASFRCFGELPISMGNL--GSLKELDLSQNGFFGELPTSIRNLFS------LEKLDLSFNKLSGEFPWSTG-----  248 (413)
Q Consensus       182 i~~~~~~~~~~~~~~~~~~~l--~~L~~L~l~~~~~~~~~~~~l~~~~~------L~~L~l~~~~~~~~~~~~l~-----  248 (413)
                      ++..         .+..+..+  ++|+.|+++.|.+....+..+..+++      |+.|++++|.+....+..+.     
T Consensus       160 i~~~---------~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~  230 (844)
T 3j0a_A          160 IFLV---------CEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISK  230 (844)
T ss_dssp             CCCC---------CSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCS
T ss_pred             CCee---------CHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCc
Confidence            7754         33445544  77888888888877666665555554      88888888865433222111     


Q ss_pred             -------------------------------C--CCCCcEEEecCCccccccchhhccCCCCCeEecCCcccCCcccccc
Q 048333          249 -------------------------------N--FSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSI  295 (413)
Q Consensus       249 -------------------------------~--~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l  295 (413)
                                                     .  .++|+.|++++|.+.+..+..+..+++|+.|++++|.+....+..+
T Consensus       231 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~  310 (844)
T 3j0a_A          231 SQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAF  310 (844)
T ss_dssp             CCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTT
T ss_pred             ccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHh
Confidence                                           1  2568888888887766666777788888888888888776666677


Q ss_pred             cCCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcceechhHhhhcccCCCeeeccCccccccceeeecccccc
Q 048333          296 GNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDT  375 (413)
Q Consensus       296 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~  375 (413)
                      ..+++|+.|++++|.+++..+..+..+++|+.|++++|.+....+ . .+..+++|++|++++|.++.++.         
T Consensus       311 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~-~-~~~~l~~L~~L~Ls~N~l~~i~~---------  379 (844)
T 3j0a_A          311 YGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQD-Q-TFKFLEKLQTLDLRDNALTTIHF---------  379 (844)
T ss_dssp             TTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCS-S-CSCSCCCCCEEEEETCCSCCCSS---------
T ss_pred             cCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccCh-h-hhcCCCCCCEEECCCCCCCcccC---------
Confidence            778888888888888876667778888888888888887764333 2 56778888888888888654332         


Q ss_pred             ccccceeeeccCCCCCCcchHhhcCCCCcEEeCCCCCC
Q 048333          376 TSQKIQYRGLRSCNLTKFPNFLENQNHLVILNLSDNRI  413 (413)
Q Consensus       376 ~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i  413 (413)
                       +++|+.|++++|+++.+|..   ..+++.|++++|++
T Consensus       380 -~~~L~~L~l~~N~l~~l~~~---~~~l~~L~ls~N~l  413 (844)
T 3j0a_A          380 -IPSIPDIFLSGNKLVTLPKI---NLTANLIHLSENRL  413 (844)
T ss_dssp             -CCSCSEEEEESCCCCCCCCC---CTTCCEEECCSCCC
T ss_pred             -CCCcchhccCCCCccccccc---ccccceeecccCcc
Confidence             46788888888888877753   56788888888864

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=6.5e-32  Score=266.63  Aligned_cols=359  Identities=21%  Similarity=0.225  Sum_probs=245.7

Q ss_pred             CCCCceEEEecCCCccccccCCccccccccccceeeccccCCCCCCCC---ccccCcCccccCCcchhh----hhhcCCC
Q 048333           40 KNTGHVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIP---PEIINLSRLELQKPSFEN----LFEKLSN  112 (413)
Q Consensus        40 ~~~~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~---~~~~~L~~L~l~~~~i~~----~~~~~~~  112 (413)
                      ...+++++|++++|.+.+..+.  .+..+++|++|++++|.+... .+   ..+.+|+.|++..+.+..    .++.+++
T Consensus        49 ~~l~~L~~L~Ls~n~i~~i~~~--~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~  125 (570)
T 2z63_A           49 FSFPELQVLDLSRCEIQTIEDG--AYQSLSHLSTLILTGNPIQSL-ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT  125 (570)
T ss_dssp             TTCSSCCEEECTTCCCCEECTT--TTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTT
T ss_pred             hCCCCceEEECCCCcCCccCcc--cccCchhCCEEeCcCCcCCcc-CHhhhcCccccccccccccccccCCCcccccccc
Confidence            3567899999999988765555  788999999999999987654 22   345667777777665543    3778899


Q ss_pred             CcEEEcCCccCCC-CcCccccCCCCCcEEEccCCcccccchhhhhh-----------------cccCCCccccCCCCccE
Q 048333          113 LKTLNLGDVSIDS-TIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQ-----------------ISGRIPSSLGNLSKLLH  174 (413)
Q Consensus       113 L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~-----------------~~~~~~~~l~~~~~L~~  174 (413)
                      |++|++++|.+.+ .+|..+.++++|++|++++|.+..++...+..                 +++..+..+.. .+|+.
T Consensus       126 L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~-~~L~~  204 (570)
T 2z63_A          126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLHK  204 (570)
T ss_dssp             CCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTT-CEEEE
T ss_pred             ccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhcc-Cccee
Confidence            9999999998876 46888999999999999999877542211000                 00111111111 13444


Q ss_pred             EECCCCccccc-------------------------------cc-cc-----------------cccccccccccCCCCc
Q 048333          175 LDLSLNELQGE-------------------------------AA-SF-----------------RCFGELPISMGNLGSL  205 (413)
Q Consensus       175 L~l~~~~i~~~-------------------------------~~-~~-----------------~~~~~~~~~~~~l~~L  205 (413)
                      |++++|.....                               .. .+                 ...+..+..+..+++|
T Consensus       205 L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L  284 (570)
T 2z63_A          205 LTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNV  284 (570)
T ss_dssp             EEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTC
T ss_pred             EecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcc
Confidence            44333310000                               00 00                 0111233444455555


Q ss_pred             cEEeCCCCcCCCcchhhhh--------------------CCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCcccc
Q 048333          206 KELDLSQNGFFGELPTSIR--------------------NLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWS  265 (413)
Q Consensus       206 ~~L~l~~~~~~~~~~~~l~--------------------~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~  265 (413)
                      +.|+++++.+. .+|..+.                    .+++|+.|++++|......+.  ..+++|+.|++++|.+.+
T Consensus       285 ~~L~l~~~~l~-~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~  361 (570)
T 2z63_A          285 SSFSLVSVTIE-RVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSF  361 (570)
T ss_dssp             SEEEEESCEEC-SCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBE
T ss_pred             cEEEecCccch-hhhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCc
Confidence            55555555443 2333333                    344555555555544332222  567899999999998854


Q ss_pred             cc--chhhccCCCCCeEecCCcccCCcccccccCCCCCcEEEccCCccccccc-ccccCCCCCCEEECCCCcCcceechh
Q 048333          266 KV--PHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQIT-SSLRNLTQLVVLDMAQNSYGGTVELD  342 (413)
Q Consensus       266 ~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~  342 (413)
                      ..  +..+..+++|++|++++|.+... +..+..+++|+.|++++|.+.+..+ ..+..+++|++|++++|.+.+..+ .
T Consensus       362 ~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~  439 (570)
T 2z63_A          362 KGCCSQSDFGTTSLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN-G  439 (570)
T ss_dssp             EEEEEHHHHTCSCCCEEECCSCSEEEE-EEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCT-T
T ss_pred             cccccccccccCccCEEECCCCccccc-cccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccch-h
Confidence            43  67788999999999999988754 3348889999999999999986544 567889999999999999876554 3


Q ss_pred             HhhhcccCCCeeeccCccccccceeeecccccc-ccccceeeeccCCCCCCc-chHhhcCCCCcEEeCCCCCC
Q 048333          343 VLLTSWKNLEALDISLNRSSVLTKATFDATTDT-TSQKIQYRGLRSCNLTKF-PNFLENQNHLVILNLSDNRI  413 (413)
Q Consensus       343 ~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~-~~~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~n~i  413 (413)
                       .+..+++|++|++++|.+..     ...+..+ .+++|++|++++|+++.+ |..+..+++|+.|++++|+|
T Consensus       440 -~~~~l~~L~~L~l~~n~l~~-----~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  506 (570)
T 2z63_A          440 -IFNGLSSLEVLKMAGNSFQE-----NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL  506 (570)
T ss_dssp             -TTTTCTTCCEEECTTCEEGG-----GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             -hhhcCCcCcEEECcCCcCcc-----ccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcC
Confidence             67889999999999998431     2233334 788999999999999965 78899999999999999975

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=2.1e-31  Score=268.37  Aligned_cols=281  Identities=23%  Similarity=0.279  Sum_probs=195.6

Q ss_pred             hhcCCCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCC-cccc--CCCCccEEECCCCccc
Q 048333          107 FEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIP-SSLG--NLSKLLHLDLSLNELQ  183 (413)
Q Consensus       107 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~-~~l~--~~~~L~~L~l~~~~i~  183 (413)
                      +..+++|++|++++|.+.+..+..+..+++|++|++++|.+..          ..++ ..+.  ..+.|+.|++++|.++
T Consensus       325 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~----------~~l~~~~f~~~~~~~L~~L~L~~n~l~  394 (680)
T 1ziw_A          325 FQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSL----------RTLTNETFVSLAHSPLHILNLTKNKIS  394 (680)
T ss_dssp             TTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCC----------CEECTTTTGGGTTSCCCEEECTTSCCC
T ss_pred             cccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhh----------hhcchhhhcccccCcCceEECCCCCCC
Confidence            4445555555555555554444445555555555555544221          0000 1111  1235555666665555


Q ss_pred             cccccccccccccccccCCCCccEEeCCCCcCCCcch-hhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCc
Q 048333          184 GEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELP-TSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCG  262 (413)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~  262 (413)
                      ..         .|..+..+++|+.|++++|.+...++ ..+..+++|++|++++|.+....+..+..+++|+.|++++|.
T Consensus       395 ~~---------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~  465 (680)
T 1ziw_A          395 KI---------ESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVA  465 (680)
T ss_dssp             EE---------CTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSC
T ss_pred             eE---------ChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhcccc
Confidence            33         35567788888888888888765444 567888888888888888776677778888888889888887


Q ss_pred             cc--cccchhhccCCCCCeEecCCcccCCcccccccCCCCCcEEEccCCccccccc--------ccccCCCCCCEEECCC
Q 048333          263 FW--SKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQIT--------SSLRNLTQLVVLDMAQ  332 (413)
Q Consensus       263 ~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~--------~~~~~~~~L~~L~l~~  332 (413)
                      +.  +..|..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+++..+        ..+..+++|+.|++++
T Consensus       466 l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~  545 (680)
T 1ziw_A          466 LKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLES  545 (680)
T ss_dssp             CBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCS
T ss_pred             ccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCC
Confidence            64  4567778888999999999998887666678888999999999998874321        2367788999999999


Q ss_pred             CcCcceechhHhhhcccCCCeeeccCccccccceeeeccccccccccceeeeccCCCCCCcch-Hhh-cCCCCcEEeCCC
Q 048333          333 NSYGGTVELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLTKFPN-FLE-NQNHLVILNLSD  410 (413)
Q Consensus       333 n~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~-~~~-~l~~L~~L~l~~  410 (413)
                      |.+. .++.. .+.++++|++|++++|.++.+++..+.     .+++|++|++++|+++.++. .+. .+++|+.|++++
T Consensus       546 N~l~-~i~~~-~~~~l~~L~~L~Ls~N~l~~l~~~~~~-----~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~  618 (680)
T 1ziw_A          546 NGFD-EIPVE-VFKDLFELKIIDLGLNNLNTLPASVFN-----NQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRF  618 (680)
T ss_dssp             SCCC-CCCTT-TTTTCTTCCEEECCSSCCCCCCTTTTT-----TCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTT
T ss_pred             CCCC-CCCHH-HcccccCcceeECCCCCCCcCCHhHhC-----CCCCCCEEECCCCcCCccChhHhcccccccCEEEccC
Confidence            9887 34423 678899999999999987654433221     56789999999999996654 455 689999999999


Q ss_pred             CCC
Q 048333          411 NRI  413 (413)
Q Consensus       411 n~i  413 (413)
                      |++
T Consensus       619 N~~  621 (680)
T 1ziw_A          619 NPF  621 (680)
T ss_dssp             CCC
T ss_pred             CCc
Confidence            875

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.7e-31  Score=257.74  Aligned_cols=299  Identities=20%  Similarity=0.230  Sum_probs=254.0

Q ss_pred             cccceeeccccCCCCCCCCccccCcCccccCCcchhhhhhcCCCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCccc
Q 048333           69 VHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENLFEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQ  148 (413)
Q Consensus        69 ~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~  148 (413)
                      +++++|++++|.+... .                 +..|..+++|++|++++|.+.+..|..|.++++|++|++++|.+.
T Consensus        32 ~~l~~L~L~~n~l~~~-~-----------------~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~   93 (477)
T 2id5_A           32 TETRLLDLGKNRIKTL-N-----------------QDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK   93 (477)
T ss_dssp             TTCSEEECCSSCCCEE-C-----------------TTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred             CCCcEEECCCCccceE-C-----------------HhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCC
Confidence            6899999999987653 1                 234778999999999999998877889999999999999999987


Q ss_pred             ccchhhhhhcccCCCccccCCCCccEEECCCCccccccccccccccccccccCCCCccEEeCCCCcCCCcchhhhhCCCC
Q 048333          149 AMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFS  228 (413)
Q Consensus       149 ~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~  228 (413)
                      .           ..+..+.++++|++|++++|.+...         .+..+..+++|++|++++|.+....+..+..+++
T Consensus        94 ~-----------~~~~~~~~l~~L~~L~Ls~n~i~~~---------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  153 (477)
T 2id5_A           94 L-----------IPLGVFTGLSNLTKLDISENKIVIL---------LDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNS  153 (477)
T ss_dssp             S-----------CCTTSSTTCTTCCEEECTTSCCCEE---------CTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTT
T ss_pred             c-----------cCcccccCCCCCCEEECCCCccccC---------ChhHccccccCCEEECCCCccceeChhhccCCCC
Confidence            3           2334578899999999999998864         4567889999999999999998777788999999


Q ss_pred             CCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccCCCCCeEecCCcccCCcccccccCCCCCcEEEccC
Q 048333          229 LEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAK  308 (413)
Q Consensus       229 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~  308 (413)
                      |+.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|...+..+.......+|+.|++++
T Consensus       154 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  233 (477)
T 2id5_A          154 LEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITH  233 (477)
T ss_dssp             CCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEES
T ss_pred             CCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcC
Confidence            99999999999866666788999999999999998777777899999999999999987666666555667999999999


Q ss_pred             CcccccccccccCCCCCCEEECCCCcCcceechhHhhhcccCCCeeeccCccccccceeeecccccc-ccccceeeeccC
Q 048333          309 CNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDT-TSQKIQYRGLRS  387 (413)
Q Consensus       309 ~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~-~~~~L~~L~l~~  387 (413)
                      |.+++..+..+..+++|+.|++++|.+.+..+ . .+..+++|++|++++|.++.+.      +..+ .+++|++|++++
T Consensus       234 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~-~~~~l~~L~~L~L~~n~l~~~~------~~~~~~l~~L~~L~L~~  305 (477)
T 2id5_A          234 CNLTAVPYLAVRHLVYLRFLNLSYNPISTIEG-S-MLHELLRLQEIQLVGGQLAVVE------PYAFRGLNYLRVLNVSG  305 (477)
T ss_dssp             SCCCSCCHHHHTTCTTCCEEECCSSCCCEECT-T-SCTTCTTCCEEECCSSCCSEEC------TTTBTTCTTCCEEECCS
T ss_pred             CcccccCHHHhcCccccCeeECCCCcCCccCh-h-hccccccCCEEECCCCccceEC------HHHhcCcccCCEEECCC
Confidence            99985555678899999999999999985444 3 6789999999999999965533      2233 678999999999


Q ss_pred             CCCCCcch-HhhcCCCCcEEeCCCCCC
Q 048333          388 CNLTKFPN-FLENQNHLVILNLSDNRI  413 (413)
Q Consensus       388 ~~l~~l~~-~~~~l~~L~~L~l~~n~i  413 (413)
                      |.++.++. .+..+++|+.|++++|++
T Consensus       306 N~l~~~~~~~~~~l~~L~~L~l~~N~l  332 (477)
T 2id5_A          306 NQLTTLEESVFHSVGNLETLILDSNPL  332 (477)
T ss_dssp             SCCSCCCGGGBSCGGGCCEEECCSSCE
T ss_pred             CcCceeCHhHcCCCcccCEEEccCCCc
Confidence            99997774 568899999999999974

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=7.9e-32  Score=265.27  Aligned_cols=341  Identities=21%  Similarity=0.229  Sum_probs=214.3

Q ss_pred             CceEEEecCCCccccccCCccccccccccceeeccccCCCCCCCCc---cccCcCccccCCcchhhh-hhcCCCCcEEEc
Q 048333           43 GHVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPP---EIINLSRLELQKPSFENL-FEKLSNLKTLNL  118 (413)
Q Consensus        43 ~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~~~i~~~-~~~~~~L~~L~l  118 (413)
                      +++++|++++|.+.+..+.  .+..+++|++|++++|.+... .+.   .+.+|+.|++..+.+... -..+++|++|++
T Consensus        52 ~~L~~L~Ls~N~i~~~~~~--~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~lp~~~l~~L~~L~L  128 (562)
T 3a79_B           52 PRTKALSLSQNSISELRMP--DISFLSELRVLRLSHNRIRSL-DFHVFLFNQDLEYLDVSHNRLQNISCCPMASLRHLDL  128 (562)
T ss_dssp             TTCCEEECCSSCCCCCCGG--GTTTCTTCCEEECCSCCCCEE-CTTTTTTCTTCCEEECTTSCCCEECSCCCTTCSEEEC
T ss_pred             CCcCEEECCCCCccccChh--hhccCCCccEEECCCCCCCcC-CHHHhCCCCCCCEEECCCCcCCccCccccccCCEEEC
Confidence            4677777777777654444  677777777777777766653 232   234555556665444321 015667777777


Q ss_pred             CCccCCC-CcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCc--cEEECCCCcc--ccccc-ccccc
Q 048333          119 GDVSIDS-TIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKL--LHLDLSLNEL--QGEAA-SFRCF  192 (413)
Q Consensus       119 ~~~~~~~-~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L--~~L~l~~~~i--~~~~~-~~~~~  192 (413)
                      ++|.+.+ .+|..+.++++|++|++++|.+..              ..+..+++|  +.|++++|.+  +...+ .+...
T Consensus       129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~--------------~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l  194 (562)
T 3a79_B          129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ--------------LDLLPVAHLHLSCILLDLVSYHIKGGETESLQIP  194 (562)
T ss_dssp             CSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT--------------TTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEEC
T ss_pred             CCCCccccCchHhhcccCcccEEecCCCcccc--------------CchhhhhhceeeEEEeecccccccccCccccccc
Confidence            7777654 234566777777777777766552              122233333  7777777766  33222 11000


Q ss_pred             c---------------ccc-ccccCCC-----------------------------------------------------
Q 048333          193 G---------------ELP-ISMGNLG-----------------------------------------------------  203 (413)
Q Consensus       193 ~---------------~~~-~~~~~l~-----------------------------------------------------  203 (413)
                      .               .++ ..+..++                                                     
T Consensus       195 ~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~  274 (562)
T 3a79_B          195 NTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFW  274 (562)
T ss_dssp             CEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHT
T ss_pred             CcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhh
Confidence            0               000 0111222                                                     


Q ss_pred             --CccEEeCCCCcCCCcchhhh-----hCC--------------------------CCCCEEEccCCcCcccCCcccCCC
Q 048333          204 --SLKELDLSQNGFFGELPTSI-----RNL--------------------------FSLEKLDLSFNKLSGEFPWSTGNF  250 (413)
Q Consensus       204 --~L~~L~l~~~~~~~~~~~~l-----~~~--------------------------~~L~~L~l~~~~~~~~~~~~l~~~  250 (413)
                        +|++|++++|.+...+|..+     ..+                          .+|+.|++++|.+....  ....+
T Consensus       275 ~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l  352 (562)
T 3a79_B          275 PRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSP  352 (562)
T ss_dssp             TSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSC
T ss_pred             cccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCccccc--CccCC
Confidence              33334444443332222221     111                          22444444444332110  01567


Q ss_pred             CCCcEEEecCCccccccchhhccCCCCCeEecCCcccCC--cccccccCCCCCcEEEccCCccccccc-ccccCCCCCCE
Q 048333          251 SSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSG--DLLGSIGNLRSLEVIYIAKCNFSGQIT-SSLRNLTQLVV  327 (413)
Q Consensus       251 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~L~~~~~~~~~~-~~~~~~~~L~~  327 (413)
                      ++|++|++++|.+.+..+..+..+++|+.|++++|.+.+  ..+..+..+++|+.|++++|.+++.++ ..+..+++|+.
T Consensus       353 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~  432 (562)
T 3a79_B          353 SSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILV  432 (562)
T ss_dssp             CCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCE
T ss_pred             CCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCE
Confidence            889999999998877778888889999999999998875  234567788999999999999886344 45778899999


Q ss_pred             EECCCCcCcceechhHhhhcc-cCCCeeeccCccccccceeeeccccccccccceeeeccCCCCCCcchH-hhcCCCCcE
Q 048333          328 LDMAQNSYGGTVELDVLLTSW-KNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLTKFPNF-LENQNHLVI  405 (413)
Q Consensus       328 L~l~~n~~~~~~~~~~~~~~~-~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~-~~~l~~L~~  405 (413)
                      |++++|.+.+..+     ..+ ++|++|++++|.++.++...+      .+++|++|++++|+++.+|.. +..+++|+.
T Consensus       433 L~l~~n~l~~~~~-----~~l~~~L~~L~L~~N~l~~ip~~~~------~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~  501 (562)
T 3a79_B          433 LNLSSNMLTGSVF-----RCLPPKVKVLDLHNNRIMSIPKDVT------HLQALQELNVASNQLKSVPDGVFDRLTSLQY  501 (562)
T ss_dssp             EECCSSCCCGGGG-----SSCCTTCSEEECCSSCCCCCCTTTT------SSCCCSEEECCSSCCCCCCTTSTTTCTTCCC
T ss_pred             EECCCCCCCcchh-----hhhcCcCCEEECCCCcCcccChhhc------CCCCCCEEECCCCCCCCCCHHHHhcCCCCCE
Confidence            9999998875333     234 689999999998765443322      567899999999999999877 889999999


Q ss_pred             EeCCCCCC
Q 048333          406 LNLSDNRI  413 (413)
Q Consensus       406 L~l~~n~i  413 (413)
                      |++++|++
T Consensus       502 L~l~~N~~  509 (562)
T 3a79_B          502 IWLHDNPW  509 (562)
T ss_dssp             EECCSCCB
T ss_pred             EEecCCCc
Confidence            99999975

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=1.3e-30  Score=250.59  Aligned_cols=332  Identities=20%  Similarity=0.249  Sum_probs=233.3

Q ss_pred             CceEEEecCCCccccccCCccccccccccceeeccccCCCCCCCCccccCcCccccCCcchhhh--hhcCCCCcEEEcCC
Q 048333           43 GHVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENL--FEKLSNLKTLNLGD  120 (413)
Q Consensus        43 ~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~--~~~~~~L~~L~l~~  120 (413)
                      ++++.|++.++.+.. ++   .+..+++|++|++++|.+........+.+|+.|.+.++.+...  +..+++|++|++++
T Consensus        46 ~~l~~L~l~~~~i~~-l~---~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~  121 (466)
T 1o6v_A           46 DQVTTLQADRLGIKS-ID---GVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFN  121 (466)
T ss_dssp             HTCCEEECCSSCCCC-CT---TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCS
T ss_pred             ccccEEecCCCCCcc-Cc---chhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCccccChhhcCCCCCCEEECCC
Confidence            467788888776653 22   4677888888888888776532123345566666665544322  67788888888888


Q ss_pred             ccCCCCcCccccCCCCCcEEEccCCcccccchhhhhh------ccc--CCCccccCCCCccEEECCCCcccccccccccc
Q 048333          121 VSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQ------ISG--RIPSSLGNLSKLLHLDLSLNELQGEAASFRCF  192 (413)
Q Consensus       121 ~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~------~~~--~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~  192 (413)
                      |.+.+.. . +..+++|++|++++|.+..++......      +..  .....+.++++|+.|++++|.+.+.       
T Consensus       122 n~l~~~~-~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-------  192 (466)
T 1o6v_A          122 NQITDID-P-LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI-------  192 (466)
T ss_dssp             SCCCCCG-G-GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC-------
T ss_pred             CCCCCCh-H-HcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC-------
Confidence            8876543 2 777888888888888776543211000      000  0012266778888888888877643       


Q ss_pred             ccccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhc
Q 048333          193 GELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIG  272 (413)
Q Consensus       193 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~  272 (413)
                          ..+..+++|+.|++++|.+....+  +..+++|+.|++++|.+...  ..+..+++|+.|++++|.+.+..+  +.
T Consensus       193 ----~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~  262 (466)
T 1o6v_A          193 ----SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LS  262 (466)
T ss_dssp             ----GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GT
T ss_pred             ----hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hh
Confidence                236677888888888888764433  66788888888888877632  346677888888888888754433  77


Q ss_pred             cCCCCCeEecCCcccCCcccccccCCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcceechhHhhhcccCCC
Q 048333          273 NFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLE  352 (413)
Q Consensus       273 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~  352 (413)
                      .+++|+.|++++|.+.+..+  +..+++|+.|++++|.+++..+  +..+++|+.|++++|.+.+..+    +..+++|+
T Consensus       263 ~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~----~~~l~~L~  334 (466)
T 1o6v_A          263 GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP----VSSLTKLQ  334 (466)
T ss_dssp             TCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG----GGGCTTCC
T ss_pred             cCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh----hccCccCC
Confidence            88888888888888875332  7778889999998888875433  6778889999999988875443    56788899


Q ss_pred             eeeccCccccccceeeeccccccccccceeeeccCCCCCCcchHhhcCCCCcEEeCCCCCC
Q 048333          353 ALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLTKFPNFLENQNHLVILNLSDNRI  413 (413)
Q Consensus       353 ~L~l~~~~i~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i  413 (413)
                      +|++++|.++.++       ....+++|++|++++|.++.++. +..+++|+.|++++|++
T Consensus       335 ~L~l~~n~l~~~~-------~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~~  387 (466)
T 1o6v_A          335 RLFFYNNKVSDVS-------SLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAW  387 (466)
T ss_dssp             EEECCSSCCCCCG-------GGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEEE
T ss_pred             EeECCCCccCCch-------hhccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCCcc
Confidence            9999998866542       11267889999999999986554 78899999999998863

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=5e-31  Score=262.12  Aligned_cols=347  Identities=22%  Similarity=0.236  Sum_probs=223.8

Q ss_pred             CCCceEEEecCCCccccccCCccccccccccceeeccccCCCCCCCCc---cccCcCccccCCcch----hhhhhcCCCC
Q 048333           41 NTGHVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPP---EIINLSRLELQKPSF----ENLFEKLSNL  113 (413)
Q Consensus        41 ~~~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~~~i----~~~~~~~~~L  113 (413)
                      ..+++++|++++|.+.+..+.  .+..+++|++|++++|.+... .+.   .+.+|+.|++..+.+    +..++++++|
T Consensus        30 ~~~~l~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~Ls~n~l~~i-~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L  106 (606)
T 3vq2_A           30 IPSSTKNIDLSFNPLKILKSY--SFSNFSELQWLDLSRCEIETI-EDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSL  106 (606)
T ss_dssp             SCTTCCEEECTTSCCCEECTT--TTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTC
T ss_pred             CCCCcCEEECCCCCcCEeChh--hccCCccCcEEeCCCCccccc-CHHHhhchhhcCEeECCCCcccccChhhcCCcccC
Confidence            346899999999999876666  899999999999999988764 343   455777778876655    5668899999


Q ss_pred             cEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCcccccccc-ccc-
Q 048333          114 KTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAAS-FRC-  191 (413)
Q Consensus       114 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~-~~~-  191 (413)
                      ++|++++|.+.+..+..+.++++|++|++++|.+..          ..+|..+.++++|++|++++|.+++..+. +.. 
T Consensus       107 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~----------~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l  176 (606)
T 3vq2_A          107 ENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHS----------CKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFL  176 (606)
T ss_dssp             CEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCC----------CCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHH
T ss_pred             CEEEccCCccccccccccCCCCCCCEEeCCCCcccc----------eechHhHhhcCCCCEEEccCCcceecChhhhhhh
Confidence            999999999987776789999999999999999873          25688899999999999999998875432 100 


Q ss_pred             ----------------cccccc----------------------------------------------------------
Q 048333          192 ----------------FGELPI----------------------------------------------------------  197 (413)
Q Consensus       192 ----------------~~~~~~----------------------------------------------------------  197 (413)
                                      ...++.                                                          
T Consensus       177 ~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~  256 (606)
T 3vq2_A          177 RENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIME  256 (606)
T ss_dssp             HHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGT
T ss_pred             hccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhh
Confidence                            000010                                                          


Q ss_pred             ---------------------------------------------cccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEE
Q 048333          198 ---------------------------------------------SMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKL  232 (413)
Q Consensus       198 ---------------------------------------------~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L  232 (413)
                                                                   .+..+++|++|++++|.+ ..+|. + .+++|+.|
T Consensus       257 ~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l-~~lp~-~-~l~~L~~L  333 (606)
T 3vq2_A          257 GLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQL-KQFPT-L-DLPFLKSL  333 (606)
T ss_dssp             TGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCC-SSCCC-C-CCSSCCEE
T ss_pred             hhhhccHhheeccccccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccC-ccccc-C-CCCcccee
Confidence                                                         122223334444444433 22221 1 33333333


Q ss_pred             EccCCcCcccCCcccCCCCCCcEEEecCCccccc-------------------------cchhhccCCCCCeEecCCccc
Q 048333          233 DLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSK-------------------------VPHSIGNFTRLQFLFLGFNNF  287 (413)
Q Consensus       233 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-------------------------~~~~~~~~~~L~~L~l~~~~~  287 (413)
                      ++++|......  .+..+++|+.|++++|.+.+.                         .+..+..+++|+.|++++|.+
T Consensus       334 ~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l  411 (606)
T 3vq2_A          334 TLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTL  411 (606)
T ss_dssp             EEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEE
T ss_pred             eccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCcc
Confidence            33333211111  233444555555555544322                         223344445555555555555


Q ss_pred             CCccc-ccccCCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcce-echhHhhhcccCCCeeeccCccccccc
Q 048333          288 SGDLL-GSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGT-VELDVLLTSWKNLEALDISLNRSSVLT  365 (413)
Q Consensus       288 ~~~~~-~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~-~~~~~~~~~~~~L~~L~l~~~~i~~l~  365 (413)
                      .+..+ ..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+.+. .+ . .+..+++|++|++++|.++.  
T Consensus       412 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~-~~~~l~~L~~L~Ls~n~l~~--  487 (606)
T 3vq2_A          412 KRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLS-N-VFANTTNLTFLDLSKCQLEQ--  487 (606)
T ss_dssp             ESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEEC-S-CCTTCTTCCEEECTTSCCCE--
T ss_pred             CCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchH-H-hhccCCCCCEEECCCCcCCc--
Confidence            43333 3455566666666666666655566666667777777777766642 22 2 45667777777777777432  


Q ss_pred             eeeecccccc-ccccceeeeccCCCCCCc-chHhhcCCCCcEEeCCCCCC
Q 048333          366 KATFDATTDT-TSQKIQYRGLRSCNLTKF-PNFLENQNHLVILNLSDNRI  413 (413)
Q Consensus       366 ~~~~~~~~~~-~~~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~n~i  413 (413)
                          ..+..+ .+++|++|++++|+++.+ |..+.++++|+.|++++|+|
T Consensus       488 ----~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l  533 (606)
T 3vq2_A          488 ----ISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRI  533 (606)
T ss_dssp             ----ECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCC
T ss_pred             ----cChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcC
Confidence                222323 677888888888888855 77788888888888888875

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=2.6e-31  Score=261.53  Aligned_cols=328  Identities=18%  Similarity=0.223  Sum_probs=223.9

Q ss_pred             eEEEecCCCccccccCCccccccccccceeeccccCCCCCCCCcc---ccCcCccccCCcch----hhhhhcCCCCcEEE
Q 048333           45 VIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPPE---IINLSRLELQKPSF----ENLFEKLSNLKTLN  117 (413)
Q Consensus        45 l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~---~~~L~~L~l~~~~i----~~~~~~~~~L~~L~  117 (413)
                      .++++++++.+.. +|.  .+.  ++|++|++++|.+... .+..   +.+|+.|++.++.+    ++.+..+++|++|+
T Consensus        33 ~~~l~ls~~~L~~-ip~--~~~--~~L~~L~Ls~N~i~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  106 (562)
T 3a79_B           33 ESMVDYSNRNLTH-VPK--DLP--PRTKALSLSQNSISEL-RMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLD  106 (562)
T ss_dssp             CCEEECTTSCCCS-CCT--TSC--TTCCEEECCSSCCCCC-CGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred             CcEEEcCCCCCcc-CCC--CCC--CCcCEEECCCCCcccc-ChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEE
Confidence            3889999998875 444  343  8999999999998864 3333   44566667776555    34477788888888


Q ss_pred             cCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCccccccccccccccccc
Q 048333          118 LGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPI  197 (413)
Q Consensus       118 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~  197 (413)
                      +++|.+. .+|..  .+++|++|++++|.+..+          ..|..+.++++|++|++++|.++..            
T Consensus       107 Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l----------~~p~~~~~l~~L~~L~L~~n~l~~~------------  161 (562)
T 3a79_B          107 VSHNRLQ-NISCC--PMASLRHLDLSFNDFDVL----------PVCKEFGNLTKLTFLGLSAAKFRQL------------  161 (562)
T ss_dssp             CTTSCCC-EECSC--CCTTCSEEECCSSCCSBC----------CCCGGGGGCTTCCEEEEECSBCCTT------------
T ss_pred             CCCCcCC-ccCcc--ccccCCEEECCCCCcccc----------CchHhhcccCcccEEecCCCccccC------------
Confidence            8888886 45554  688888888888887632          2356778888888888888877642            


Q ss_pred             cccCCCCc--cEEeCCCCcC--CCcchhhhhCC--------------------------C--------------------
Q 048333          198 SMGNLGSL--KELDLSQNGF--FGELPTSIRNL--------------------------F--------------------  227 (413)
Q Consensus       198 ~~~~l~~L--~~L~l~~~~~--~~~~~~~l~~~--------------------------~--------------------  227 (413)
                      .+..+++|  +.|++++|.+  ....+..+..+                          +                    
T Consensus       162 ~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~  241 (562)
T 3a79_B          162 DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTF  241 (562)
T ss_dssp             TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHH
T ss_pred             chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHH
Confidence            23333444  8888888776  33333322221                          1                    


Q ss_pred             -----------------------------------CCCEEEccCCcCcccCCccc-----CCCC----------------
Q 048333          228 -----------------------------------SLEKLDLSFNKLSGEFPWST-----GNFS----------------  251 (413)
Q Consensus       228 -----------------------------------~L~~L~l~~~~~~~~~~~~l-----~~~~----------------  251 (413)
                                                         +|++|++++|.+.+.+|..+     ..+.                
T Consensus       242 ~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~  321 (562)
T 3a79_B          242 LSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSK  321 (562)
T ss_dssp             HHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCH
T ss_pred             HHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecCh
Confidence                                               34444444444443334333     1111                


Q ss_pred             ----------CCcEEEecCCccccccchhhccCCCCCeEecCCcccCCcccccccCCCCCcEEEccCCcccc--cccccc
Q 048333          252 ----------SLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSG--QITSSL  319 (413)
Q Consensus       252 ----------~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~--~~~~~~  319 (413)
                                +|+.|++++|.+....  ....+++|++|++++|.+.+..+..+..+++|+.|++++|.+++  ..+..+
T Consensus       322 ~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  399 (562)
T 3a79_B          322 EALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMT  399 (562)
T ss_dssp             HHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTT
T ss_pred             hhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhh
Confidence                      2333333333331110  01567788888888888887677778888889999998888875  334567


Q ss_pred             cCCCCCCEEECCCCcCcceechhHhhhcccCCCeeeccCccccccceeeeccccccccccceeeeccCCCCCCcchHhhc
Q 048333          320 RNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLTKFPNFLEN  399 (413)
Q Consensus       320 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~  399 (413)
                      ..+++|+.|++++|.+.+..+.. .+..+++|++|++++|.++      ...+..+. ++|++|++++|+++.+|..+.+
T Consensus       400 ~~l~~L~~L~l~~N~l~~~~~~~-~~~~l~~L~~L~l~~n~l~------~~~~~~l~-~~L~~L~L~~N~l~~ip~~~~~  471 (562)
T 3a79_B          400 KNMSSLETLDVSLNSLNSHAYDR-TCAWAESILVLNLSSNMLT------GSVFRCLP-PKVKVLDLHNNRIMSIPKDVTH  471 (562)
T ss_dssp             TTCTTCCEEECTTSCCBSCCSSC-CCCCCTTCCEEECCSSCCC------GGGGSSCC-TTCSEEECCSSCCCCCCTTTTS
T ss_pred             cCCCCCCEEECCCCcCCCccChh-hhcCcccCCEEECCCCCCC------cchhhhhc-CcCCEEECCCCcCcccChhhcC
Confidence            78888999999888887645522 5677888899999988853      23333212 6899999999999999988889


Q ss_pred             CCCCcEEeCCCCCC
Q 048333          400 QNHLVILNLSDNRI  413 (413)
Q Consensus       400 l~~L~~L~l~~n~i  413 (413)
                      +++|+.|++++|+|
T Consensus       472 l~~L~~L~L~~N~l  485 (562)
T 3a79_B          472 LQALQELNVASNQL  485 (562)
T ss_dssp             SCCCSEEECCSSCC
T ss_pred             CCCCCEEECCCCCC
Confidence            99999999999986

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.98  E-value=1.1e-31  Score=275.94  Aligned_cols=370  Identities=18%  Similarity=0.150  Sum_probs=226.2

Q ss_pred             CCCCceEEEecCCCcccccc-CCccccccccccceeeccccCCCCCCCCcc---ccCcCccccCCcchhh------hhhc
Q 048333           40 KNTGHVIKLNLSHGCLFGSI-NSSSSLFKLVHLKWLNLALNDFNSSEIPPE---IINLSRLELQKPSFEN------LFEK  109 (413)
Q Consensus        40 ~~~~~l~~L~l~~~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~---~~~L~~L~l~~~~i~~------~~~~  109 (413)
                      ....++++|++++|.....+ +.  .+..+++|++|++++|.+... .+..   +.+|+.|++..+.+.+      .++.
T Consensus        45 ~~l~~L~~LdLs~n~~~~~i~~~--~f~~L~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~  121 (844)
T 3j0a_A           45 PFLEQLQLLELGSQYTPLTIDKE--AFRNLPNLRILDLGSSKIYFL-HPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRN  121 (844)
T ss_dssp             SSCCSCSEEEECTTCCCCEECTT--TTSSCTTCCEEECTTCCCCEE-CTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSS
T ss_pred             cccccCeEEeCCCCCCccccCHH--HhcCCCCCCEEECCCCcCccc-CHhHccCCcccCEeeCcCCCCCcccccCccccc
Confidence            35678999999998655444 44  789999999999999988764 3443   4566667777665542      2778


Q ss_pred             CCCCcEEEcCCccCCCCcC-ccccCCCCCcEEEccCCcccccchhhhh---------------hcccCCCccccCCCC--
Q 048333          110 LSNLKTLNLGDVSIDSTIP-HNIKNLSSLTFVSLRNCELQAMCSFFLI---------------QISGRIPSSLGNLSK--  171 (413)
Q Consensus       110 ~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~~~~---------------~~~~~~~~~l~~~~~--  171 (413)
                      +++|++|++++|.+.+..+ ..+.++++|++|++++|.+.......+.               .+.+..+..+..+++  
T Consensus       122 L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~  201 (844)
T 3j0a_A          122 LKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPF  201 (844)
T ss_dssp             CSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTT
T ss_pred             cCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCcc
Confidence            9999999999999876544 5788999999999999887653211110               122333344444443  


Q ss_pred             ----ccEEECCCCcccccccccccc---------------------------ccccccccC--CCCccEEeCCCCcCCCc
Q 048333          172 ----LLHLDLSLNELQGEAASFRCF---------------------------GELPISMGN--LGSLKELDLSQNGFFGE  218 (413)
Q Consensus       172 ----L~~L~l~~~~i~~~~~~~~~~---------------------------~~~~~~~~~--l~~L~~L~l~~~~~~~~  218 (413)
                          |+.|++++|.++...+.....                           ...+..+..  .++|+.|++++|.+...
T Consensus       202 ~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~  281 (844)
T 3j0a_A          202 RNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSL  281 (844)
T ss_dssp             TTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEE
T ss_pred             ccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCccccc
Confidence                888888888665432210000                           000111222  25677788877777655


Q ss_pred             chhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccCCCCCeEecCCcccCCcccccccCC
Q 048333          219 LPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNL  298 (413)
Q Consensus       219 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~  298 (413)
                      .+..+..+++|+.|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+....+..+..+
T Consensus       282 ~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l  361 (844)
T 3j0a_A          282 NSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFL  361 (844)
T ss_dssp             CSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSC
T ss_pred             ChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCC
Confidence            66667777778888887777776666677777778888887777766666677777777888887777765555566677


Q ss_pred             CCCcEEEccCCccccccc---------------ccccCCCCCCEEECCCCcCcceechhHhhhcccCCCeeeccCccccc
Q 048333          299 RSLEVIYIAKCNFSGQIT---------------SSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSV  363 (413)
Q Consensus       299 ~~L~~L~L~~~~~~~~~~---------------~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~  363 (413)
                      ++|+.|++++|.+++...               ..-.....++.|++++|.+.+... ...+..+++|++|++++|.++.
T Consensus       362 ~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~-~~~~~~l~~L~~L~Ls~N~l~~  440 (844)
T 3j0a_A          362 EKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDI-LYFLLRVPHLQILILNQNRFSS  440 (844)
T ss_dssp             CCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTT-HHHHTTCTTCCEEEEESCCCCC
T ss_pred             CCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCch-hhhhhcCCccceeeCCCCcccc
Confidence            777777777776652110               000001222333333333322111 1123344455555555544432


Q ss_pred             ccee------------------------eecccccc-ccccceeeeccCCCCCCcc-hHhhcCCCCcEEeCCCCCC
Q 048333          364 LTKA------------------------TFDATTDT-TSQKIQYRGLRSCNLTKFP-NFLENQNHLVILNLSDNRI  413 (413)
Q Consensus       364 l~~~------------------------~~~~~~~~-~~~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~l~~n~i  413 (413)
                      ++..                        ....+..+ .+++|++|++++|.++.+| ..+.++++|+.|++++|+|
T Consensus       441 ~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  516 (844)
T 3j0a_A          441 CSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRL  516 (844)
T ss_dssp             CCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCC
T ss_pred             cccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCC
Confidence            2110                        00011112 4677888888888777554 4467788888888888765

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.97  E-value=6.6e-30  Score=255.39  Aligned_cols=352  Identities=23%  Similarity=0.233  Sum_probs=252.1

Q ss_pred             CCceEEEecCCCccccccCCccccccccccceeeccccCCCCCCCC---ccccCcCccccCCcchh----hhhhcCCCCc
Q 048333           42 TGHVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIP---PEIINLSRLELQKPSFE----NLFEKLSNLK  114 (413)
Q Consensus        42 ~~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~---~~~~~L~~L~l~~~~i~----~~~~~~~~L~  114 (413)
                      +..+++|+|++|.++...+.  .|..+++|++|++++|++... .+   ..+.+|+.|++.++.+.    .+|.++++|+
T Consensus        51 p~~~~~LdLs~N~i~~l~~~--~f~~l~~L~~L~Ls~N~i~~i-~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~  127 (635)
T 4g8a_A           51 PFSTKNLDLSFNPLRHLGSY--SFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ  127 (635)
T ss_dssp             CTTCCEEECTTSCCCEECTT--TTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCC
T ss_pred             CcCCCEEEeeCCCCCCCCHH--HHhCCCCCCEEECCCCcCCCc-ChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCC
Confidence            35799999999999876656  899999999999999988764 22   34567777888876653    4588999999


Q ss_pred             EEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCccccccc-cccc--
Q 048333          115 TLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAA-SFRC--  191 (413)
Q Consensus       115 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~-~~~~--  191 (413)
                      +|++++|.+.+..+..|+++++|++|++++|.+..+          ..|..+..+++|++|++++|.++...+ .+..  
T Consensus       128 ~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~----------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~  197 (635)
T 4g8a_A          128 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF----------KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH  197 (635)
T ss_dssp             EEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCC----------CCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHH
T ss_pred             EEECCCCcCCCCChhhhhcCcccCeeccccCccccC----------CCchhhccchhhhhhcccCccccccccccccchh
Confidence            999999999876667799999999999999998742          456677888889999988887765322 1100  


Q ss_pred             ---------------cc---------------------------------------------------------------
Q 048333          192 ---------------FG---------------------------------------------------------------  193 (413)
Q Consensus       192 ---------------~~---------------------------------------------------------------  193 (413)
                                     ..                                                               
T Consensus       198 ~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~  277 (635)
T 4g8a_A          198 QMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEG  277 (635)
T ss_dssp             TCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGG
T ss_pred             hhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccccccccccccccccccc
Confidence                           00                                                               


Q ss_pred             -------------------cc----------------------cccccCCCCccEEeCCCCcCCCcch------------
Q 048333          194 -------------------EL----------------------PISMGNLGSLKELDLSQNGFFGELP------------  220 (413)
Q Consensus       194 -------------------~~----------------------~~~~~~l~~L~~L~l~~~~~~~~~~------------  220 (413)
                                         ..                      ...+.....++.|++.++.+....+            
T Consensus       278 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~  357 (635)
T 4g8a_A          278 LCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFT  357 (635)
T ss_dssp             GGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEE
T ss_pred             ccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccc
Confidence                               00                      0001112234444444443221100            


Q ss_pred             -------hhhhCCCCCCEEEccCCcCcc--c-----------------------CCcccCCCCCCcEEEecCCcccccc-
Q 048333          221 -------TSIRNLFSLEKLDLSFNKLSG--E-----------------------FPWSTGNFSSLKLLNLRSCGFWSKV-  267 (413)
Q Consensus       221 -------~~l~~~~~L~~L~l~~~~~~~--~-----------------------~~~~l~~~~~L~~L~l~~~~~~~~~-  267 (413)
                             .....+++|+.++++.|.+..  .                       .+..+..+++|+.+++.++...... 
T Consensus       358 ~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~  437 (635)
T 4g8a_A          358 SNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSE  437 (635)
T ss_dssp             SCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTS
T ss_pred             cccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccc
Confidence                   011235677777777765531  1                       1223444566666666666543322 


Q ss_pred             chhhccCCCCCeEecCCcccCCcccccccCCCCCcEEEccCCccc-ccccccccCCCCCCEEECCCCcCcceechhHhhh
Q 048333          268 PHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFS-GQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLT  346 (413)
Q Consensus       268 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~-~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~  346 (413)
                      ...+..+++++.++++.|.+....+..+..++.++.|++++|... ...|..+..+++|+.|++++|.+.+..+ . .+.
T Consensus       438 ~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~-~-~f~  515 (635)
T 4g8a_A          438 FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP-T-AFN  515 (635)
T ss_dssp             SCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT-T-TTT
T ss_pred             ccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcCh-H-HHc
Confidence            244677788888999888887666777788999999999999765 3467788999999999999999986655 3 688


Q ss_pred             cccCCCeeeccCccccccceeeeccccccccccceeeeccCCCCCCc-chHhhcC-CCCcEEeCCCCCC
Q 048333          347 SWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLTKF-PNFLENQ-NHLVILNLSDNRI  413 (413)
Q Consensus       347 ~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~l-~~~~~~l-~~L~~L~l~~n~i  413 (413)
                      ++++|++|++++|.++.+++..+.     .+++|++|++++|+++.+ |..+..+ ++|+.|++++|++
T Consensus       516 ~l~~L~~L~Ls~N~l~~l~~~~~~-----~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~  579 (635)
T 4g8a_A          516 SLSSLQVLNMSHNNFFSLDTFPYK-----CLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF  579 (635)
T ss_dssp             TCTTCCEEECTTSCCCBCCCGGGT-----TCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCB
T ss_pred             CCCCCCEEECCCCcCCCCChhHHh-----CCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCC
Confidence            999999999999997765443222     578999999999999954 5678887 6899999999985

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.97  E-value=3.1e-31  Score=254.53  Aligned_cols=316  Identities=20%  Similarity=0.219  Sum_probs=246.3

Q ss_pred             cccceeeccccCCCCCCCCc---cccCcCccccCCcch-----hhhhhcCCCCcEEEcCCccCCCCcCccccCCCCCcEE
Q 048333           69 VHLKWLNLALNDFNSSEIPP---EIINLSRLELQKPSF-----ENLFEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFV  140 (413)
Q Consensus        69 ~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~~~i-----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  140 (413)
                      ++|++|++++|.+... .+.   .+.+|+.|++..+.+     +..+..+++|++|++++|.+.+..|..+.++++|++|
T Consensus        30 ~~l~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  108 (455)
T 3v47_A           30 AHVNYVDLSLNSIAEL-NETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVL  108 (455)
T ss_dssp             TTCCEEECCSSCCCEE-CTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEE
T ss_pred             CccCEEEecCCccCcC-ChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEE
Confidence            7899999999988764 343   355666677776544     3458889999999999999887778888899999999


Q ss_pred             EccCCcccccchhhhhhcccCCC--ccccCCCCccEEECCCCcccccccccccccccccc-ccCCCCccEEeCCCCcCCC
Q 048333          141 SLRNCELQAMCSFFLIQISGRIP--SSLGNLSKLLHLDLSLNELQGEAASFRCFGELPIS-MGNLGSLKELDLSQNGFFG  217 (413)
Q Consensus       141 ~l~~~~l~~~~~~~~~~~~~~~~--~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~  217 (413)
                      ++++|.++.           ..+  ..+..+++|++|++++|.++..         .|.. +..+++|++|++++|.+..
T Consensus       109 ~L~~n~l~~-----------~~~~~~~~~~l~~L~~L~L~~n~l~~~---------~~~~~~~~l~~L~~L~L~~n~l~~  168 (455)
T 3v47_A          109 TLTQCNLDG-----------AVLSGNFFKPLTSLEMLVLRDNNIKKI---------QPASFFLNMRRFHVLDLTFNKVKS  168 (455)
T ss_dssp             ECTTSCCBT-----------HHHHSSTTTTCTTCCEEECCSSBCCSC---------CCCGGGGGCTTCCEEECTTCCBSC
T ss_pred             eCCCCCCCc-----------cccCcccccCcccCCEEECCCCccCcc---------CcccccCCCCcccEEeCCCCcccc
Confidence            999998763           222  3377889999999999988754         2333 7788999999999998877


Q ss_pred             cchhhhhCC--CCCCEEEccCCcCcccCCcc--------cCCCCCCcEEEecCCccccccchhhccC---CCCCeEecCC
Q 048333          218 ELPTSIRNL--FSLEKLDLSFNKLSGEFPWS--------TGNFSSLKLLNLRSCGFWSKVPHSIGNF---TRLQFLFLGF  284 (413)
Q Consensus       218 ~~~~~l~~~--~~L~~L~l~~~~~~~~~~~~--------l~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~L~~L~l~~  284 (413)
                      ..+..+..+  .+|+.++++++.+....+..        +..+++|++|++++|.+.+..+..+...   ++|+.|++++
T Consensus       169 ~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~  248 (455)
T 3v47_A          169 ICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSN  248 (455)
T ss_dssp             CCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTT
T ss_pred             cChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecc
Confidence            777766665  67889999988876443332        2356789999999998877666666544   7899999988


Q ss_pred             cccCCcc----------ccccc--CCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcceechhHhhhcccCCC
Q 048333          285 NNFSGDL----------LGSIG--NLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLE  352 (413)
Q Consensus       285 ~~~~~~~----------~~~l~--~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~  352 (413)
                      |......          ...+.  ..++|+.|++++|.+++..+..+..+++|++|++++|.+.+..+ . .+..+++|+
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~-~~~~l~~L~  326 (455)
T 3v47_A          249 SYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDD-N-AFWGLTHLL  326 (455)
T ss_dssp             CTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECT-T-TTTTCTTCC
T ss_pred             ccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccCh-h-HhcCcccCC
Confidence            7543211          11111  23689999999999998888899999999999999999986554 3 688999999


Q ss_pred             eeeccCccccccceeeecccccc-ccccceeeeccCCCCCCc-chHhhcCCCCcEEeCCCCCC
Q 048333          353 ALDISLNRSSVLTKATFDATTDT-TSQKIQYRGLRSCNLTKF-PNFLENQNHLVILNLSDNRI  413 (413)
Q Consensus       353 ~L~l~~~~i~~l~~~~~~~~~~~-~~~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~n~i  413 (413)
                      +|++++|.++.+.      +..+ .+++|++|++++|.++.+ |..+.++++|+.|++++|+|
T Consensus       327 ~L~Ls~N~l~~~~------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l  383 (455)
T 3v47_A          327 KLNLSQNFLGSID------SRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQL  383 (455)
T ss_dssp             EEECCSSCCCEEC------GGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             EEECCCCccCCcC------hhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCcc
Confidence            9999999965432      2222 678999999999999965 78899999999999999986

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=2.2e-29  Score=231.19  Aligned_cols=293  Identities=19%  Similarity=0.190  Sum_probs=234.3

Q ss_pred             ccceeeccccCCCCCCCCccccCcCccccCCcchhhhhhcCCCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccc
Q 048333           70 HLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENLFEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQA  149 (413)
Q Consensus        70 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~  149 (413)
                      +++.++++++.+..  +|..                   -.++|++|++++|.+++..+..+.++++|++|++++|.++ 
T Consensus        32 ~l~~l~~~~~~l~~--lp~~-------------------~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-   89 (330)
T 1xku_A           32 HLRVVQCSDLGLEK--VPKD-------------------LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-   89 (330)
T ss_dssp             ETTEEECTTSCCCS--CCCS-------------------CCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCC-
T ss_pred             CCeEEEecCCCccc--cCcc-------------------CCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCC-
Confidence            67778887776653  3321                   1468899999999998766668899999999999999887 


Q ss_pred             cchhhhhhcccCCCccccCCCCccEEECCCCccccccccccccccccccccCCCCccEEeCCCCcCCCcchhhhhCCCCC
Q 048333          150 MCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSL  229 (413)
Q Consensus       150 ~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L  229 (413)
                                +..|..+.++++|++|++++|.++.          +|..+.  ++|++|++++|.+....+..+..+++|
T Consensus        90 ----------~~~~~~~~~l~~L~~L~Ls~n~l~~----------l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L  147 (330)
T 1xku_A           90 ----------KISPGAFAPLVKLERLYLSKNQLKE----------LPEKMP--KTLQELRVHENEITKVRKSVFNGLNQM  147 (330)
T ss_dssp             ----------CBCTTTTTTCTTCCEEECCSSCCSB----------CCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTC
T ss_pred             ----------eeCHHHhcCCCCCCEEECCCCcCCc----------cChhhc--ccccEEECCCCcccccCHhHhcCCccc
Confidence                      3457788899999999999999874          333332  689999999999987777788999999


Q ss_pred             CEEEccCCcCcc--cCCcccCCCCCCcEEEecCCccccccchhhccCCCCCeEecCCcccCCcccccccCCCCCcEEEcc
Q 048333          230 EKLDLSFNKLSG--EFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIA  307 (413)
Q Consensus       230 ~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~  307 (413)
                      +.|++++|.+..  ..+..+..+++|++|++++|.+. ..+..+.  ++|++|++++|.+.+..+..+..+++|+.|+++
T Consensus       148 ~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls  224 (330)
T 1xku_A          148 IVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLS  224 (330)
T ss_dssp             CEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECC
T ss_pred             cEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECC
Confidence            999999998853  56677888999999999999884 3444333  789999999999987767788899999999999


Q ss_pred             CCcccccccccccCCCCCCEEECCCCcCcceechhHhhhcccCCCeeeccCccccccceeeecccccc-ccccceeeecc
Q 048333          308 KCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDT-TSQKIQYRGLR  386 (413)
Q Consensus       308 ~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~-~~~~L~~L~l~  386 (413)
                      +|.+++..+..+..+++|++|++++|.+.....   .+..+++|++|++++|.++.++...+...... ..+.++.++++
T Consensus       225 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~---~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~  301 (330)
T 1xku_A          225 FNSISAVDNGSLANTPHLRELHLNNNKLVKVPG---GLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLF  301 (330)
T ss_dssp             SSCCCEECTTTGGGSTTCCEEECCSSCCSSCCT---TTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECC
T ss_pred             CCcCceeChhhccCCCCCCEEECCCCcCccCCh---hhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEee
Confidence            999987777788899999999999999884323   57889999999999999988776655433222 46789999999


Q ss_pred             CCCCC---CcchHhhcCCCCcEEeCCCCC
Q 048333          387 SCNLT---KFPNFLENQNHLVILNLSDNR  412 (413)
Q Consensus       387 ~~~l~---~l~~~~~~l~~L~~L~l~~n~  412 (413)
                      +|.+.   ..|..+..+++|+.+++++|+
T Consensus       302 ~N~~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          302 SNPVQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             SSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             cCcccccccCccccccccceeEEEecccC
Confidence            99987   345788899999999999985

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.97  E-value=5.1e-29  Score=230.44  Aligned_cols=284  Identities=23%  Similarity=0.267  Sum_probs=236.5

Q ss_pred             ccccccccceeeccccCCCCCCCCccccCcCccccCCcchhhhhhcCCCCcEEEcCCccCCCCcCccccCCCCCcEEEcc
Q 048333           64 SLFKLVHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENLFEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLR  143 (413)
Q Consensus        64 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  143 (413)
                      .+..+++|++|+++++.+...  +                  .+..+++|++|++++|.+.+. +. +..+++|++|+++
T Consensus        39 ~~~~l~~L~~L~l~~~~i~~~--~------------------~~~~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~   96 (347)
T 4fmz_A           39 TQEELESITKLVVAGEKVASI--Q------------------GIEYLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIG   96 (347)
T ss_dssp             CHHHHTTCSEEECCSSCCCCC--T------------------TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECC
T ss_pred             cchhcccccEEEEeCCccccc--h------------------hhhhcCCccEEEccCCccccc-hh-hhcCCcCCEEEcc
Confidence            566889999999999877642  2                  266799999999999999754 44 8899999999999


Q ss_pred             CCcccccchhhhhhcccCCCccccCCCCccEEECCCCccccccccccccccccccccCCCCccEEeCCCCcCCCcchhhh
Q 048333          144 NCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSI  223 (413)
Q Consensus       144 ~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l  223 (413)
                      +|.+..            + ..+.++++|++|++++|.+.+.          +. +..+++|+.|++++|.....++ .+
T Consensus        97 ~n~i~~------------~-~~~~~l~~L~~L~l~~n~i~~~----------~~-~~~l~~L~~L~l~~n~~~~~~~-~~  151 (347)
T 4fmz_A           97 TNKITD------------I-SALQNLTNLRELYLNEDNISDI----------SP-LANLTKMYSLNLGANHNLSDLS-PL  151 (347)
T ss_dssp             SSCCCC------------C-GGGTTCTTCSEEECTTSCCCCC----------GG-GTTCTTCCEEECTTCTTCCCCG-GG
T ss_pred             CCcccC------------c-hHHcCCCcCCEEECcCCcccCc----------hh-hccCCceeEEECCCCCCccccc-ch
Confidence            998873            2 3588999999999999998853          32 7889999999999997654444 48


Q ss_pred             hCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccCCCCCeEecCCcccCCcccccccCCCCCcE
Q 048333          224 RNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEV  303 (413)
Q Consensus       224 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~  303 (413)
                      ..+++|++|++++|.+....+  +..+++|+.|++++|.+.+. +. +..+++|+.+++++|.+.+..+  +..+++|+.
T Consensus       152 ~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~  225 (347)
T 4fmz_A          152 SNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDI-SP-LASLTSLHYFTAYVNQITDITP--VANMTRLNS  225 (347)
T ss_dssp             TTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCC-GG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCE
T ss_pred             hhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccc-cc-ccCCCccceeecccCCCCCCch--hhcCCcCCE
Confidence            899999999999998874333  77899999999999988543 33 8889999999999999885433  788999999


Q ss_pred             EEccCCcccccccccccCCCCCCEEECCCCcCcceechhHhhhcccCCCeeeccCccccccceeeeccccccccccceee
Q 048333          304 IYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYR  383 (413)
Q Consensus       304 L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~L~~L  383 (413)
                      |++++|.+++..+  +..+++|++|++++|.+.+. +   .+..+++|++|++++|.++.++.       ...+++|++|
T Consensus       226 L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~---~~~~l~~L~~L~l~~n~l~~~~~-------~~~l~~L~~L  292 (347)
T 4fmz_A          226 LKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI-N---AVKDLTKLKMLNVGSNQISDISV-------LNNLSQLNSL  292 (347)
T ss_dssp             EECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-G---GGTTCTTCCEEECCSSCCCCCGG-------GGGCTTCSEE
T ss_pred             EEccCCccCCCcc--hhcCCCCCEEECCCCccCCC-h---hHhcCCCcCEEEccCCccCCChh-------hcCCCCCCEE
Confidence            9999999985443  78999999999999998753 3   57899999999999999776521       1267899999


Q ss_pred             eccCCCCC-CcchHhhcCCCCcEEeCCCCCC
Q 048333          384 GLRSCNLT-KFPNFLENQNHLVILNLSDNRI  413 (413)
Q Consensus       384 ~l~~~~l~-~l~~~~~~l~~L~~L~l~~n~i  413 (413)
                      ++++|.++ ..|..+.++++|+.|++++|++
T Consensus       293 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l  323 (347)
T 4fmz_A          293 FLNNNQLGNEDMEVIGGLTNLTTLFLSQNHI  323 (347)
T ss_dssp             ECCSSCCCGGGHHHHHTCTTCSEEECCSSSC
T ss_pred             ECcCCcCCCcChhHhhccccCCEEEccCCcc
Confidence            99999999 5567899999999999999986

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.97  E-value=1.8e-29  Score=237.16  Aligned_cols=289  Identities=20%  Similarity=0.187  Sum_probs=241.2

Q ss_pred             cccccccceeeccccCCCCCCCCccccCcCccccCCcchhhhhhcCCCCcEEEcCCccCCCCcCccccCCCCCcEEEccC
Q 048333           65 LFKLVHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENLFEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRN  144 (413)
Q Consensus        65 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  144 (413)
                      -..+++++.|+++++.+..  +|                +..+..+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus        41 ~~~l~~l~~l~l~~~~l~~--l~----------------~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~  102 (390)
T 3o6n_A           41 DITLNNQKIVTFKNSTMRK--LP----------------AALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGF  102 (390)
T ss_dssp             SGGGCCCSEEEEESCEESE--EC----------------THHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             ccccCCceEEEecCCchhh--CC----------------hhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCC
Confidence            3467899999999987654  22                23478899999999999999877777899999999999999


Q ss_pred             CcccccchhhhhhcccCCCccccCCCCccEEECCCCcccccccccccccccccc-ccCCCCccEEeCCCCcCCCcchhhh
Q 048333          145 CELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPIS-MGNLGSLKELDLSQNGFFGELPTSI  223 (413)
Q Consensus       145 ~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~l  223 (413)
                      |.+.           +..+..+.++++|++|++++|.++.          +|.. +..+++|++|++++|.+....+..+
T Consensus       103 n~l~-----------~~~~~~~~~l~~L~~L~L~~n~l~~----------l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  161 (390)
T 3o6n_A          103 NAIR-----------YLPPHVFQNVPLLTVLVLERNDLSS----------LPRGIFHNTPKLTTLSMSNNNLERIEDDTF  161 (390)
T ss_dssp             SCCC-----------CCCTTTTTTCTTCCEEECCSSCCCC----------CCTTTTTTCTTCCEEECCSSCCCBCCTTTT
T ss_pred             CCCC-----------cCCHHHhcCCCCCCEEECCCCccCc----------CCHHHhcCCCCCcEEECCCCccCccChhhc
Confidence            9987           3456678999999999999999884          3433 5889999999999999987777789


Q ss_pred             hCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccCCCCCeEecCCcccCCcccccccCCCCCcE
Q 048333          224 RNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEV  303 (413)
Q Consensus       224 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~  303 (413)
                      ..+++|++|++++|.+...   .+..+++|+.+++++|.+..     +...++|+.|++++|.+... +.  ...++|+.
T Consensus       162 ~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~-----~~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~  230 (390)
T 3o6n_A          162 QATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVV-RG--PVNVELTI  230 (390)
T ss_dssp             SSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSE-----EECCSSCSEEECCSSCCCEE-EC--CCCSSCCE
T ss_pred             cCCCCCCEEECCCCcCCcc---ccccccccceeecccccccc-----cCCCCcceEEECCCCeeeec-cc--cccccccE
Confidence            9999999999999988743   25667899999999997743     33456899999999998743 22  23589999


Q ss_pred             EEccCCcccccccccccCCCCCCEEECCCCcCcceechhHhhhcccCCCeeeccCccccccceeeeccccccccccceee
Q 048333          304 IYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYR  383 (413)
Q Consensus       304 L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~L~~L  383 (413)
                      |++++|.+++.  ..+..+++|++|++++|.+.+..+ . .+..+++|++|++++|.++.++...      ..+++|++|
T Consensus       231 L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~-~-~~~~l~~L~~L~L~~n~l~~~~~~~------~~l~~L~~L  300 (390)
T 3o6n_A          231 LKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMY-H-PFVKMQRLERLYISNNRLVALNLYG------QPIPTLKVL  300 (390)
T ss_dssp             EECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEES-G-GGTTCSSCCEEECCSSCCCEEECSS------SCCTTCCEE
T ss_pred             EECCCCCCccc--HHHcCCCCccEEECCCCcCCCcCh-h-HccccccCCEEECCCCcCcccCccc------CCCCCCCEE
Confidence            99999999753  577889999999999999987655 3 6889999999999999976643222      257899999


Q ss_pred             eccCCCCCCcchHhhcCCCCcEEeCCCCCC
Q 048333          384 GLRSCNLTKFPNFLENQNHLVILNLSDNRI  413 (413)
Q Consensus       384 ~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i  413 (413)
                      ++++|.++.+|..+..+++|+.|++++|+|
T Consensus       301 ~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i  330 (390)
T 3o6n_A          301 DLSHNHLLHVERNQPQFDRLENLYLDHNSI  330 (390)
T ss_dssp             ECCSSCCCCCGGGHHHHTTCSEEECCSSCC
T ss_pred             ECCCCcceecCccccccCcCCEEECCCCcc
Confidence            999999999999999999999999999986

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=4.5e-29  Score=229.26  Aligned_cols=293  Identities=18%  Similarity=0.176  Sum_probs=233.3

Q ss_pred             cccceeeccccCCCCCCCCccccCcCccccCCcchhhhhhcCCCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCccc
Q 048333           69 VHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENLFEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQ  148 (413)
Q Consensus        69 ~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~  148 (413)
                      .+++.++++++.+..  +|..                 +  .++|++|++++|.+.+..+..+.++++|++|++++|.++
T Consensus        33 c~l~~l~~~~~~l~~--ip~~-----------------~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~   91 (332)
T 2ft3_A           33 CHLRVVQCSDLGLKA--VPKE-----------------I--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS   91 (332)
T ss_dssp             EETTEEECCSSCCSS--CCSC-----------------C--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred             ccCCEEECCCCCccc--cCCC-----------------C--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccC
Confidence            367888888887653  4422                 1  478999999999998766778999999999999999887


Q ss_pred             ccchhhhhhcccCCCccccCCCCccEEECCCCccccccccccccccccccccCCCCccEEeCCCCcCCCcchhhhhCCCC
Q 048333          149 AMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFS  228 (413)
Q Consensus       149 ~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~  228 (413)
                                 +..|..+.++++|++|++++|.++.          +|..+.  ++|++|++++|.+....+..+..+++
T Consensus        92 -----------~~~~~~~~~l~~L~~L~L~~n~l~~----------l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~  148 (332)
T 2ft3_A           92 -----------KIHEKAFSPLRKLQKLYISKNHLVE----------IPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRN  148 (332)
T ss_dssp             -----------EECGGGSTTCTTCCEEECCSSCCCS----------CCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSS
T ss_pred             -----------ccCHhHhhCcCCCCEEECCCCcCCc----------cCcccc--ccCCEEECCCCccCccCHhHhCCCcc
Confidence                       3456778899999999999999874          343333  78999999999998666667899999


Q ss_pred             CCEEEccCCcCcc--cCCcccCCCCCCcEEEecCCccccccchhhccCCCCCeEecCCcccCCcccccccCCCCCcEEEc
Q 048333          229 LEKLDLSFNKLSG--EFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYI  306 (413)
Q Consensus       229 L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L  306 (413)
                      |+.|++++|.+..  ..+..+..+ +|+.|++++|.+.+ +|..+.  ++|+.|++++|.+.+..+..+..+++|+.|++
T Consensus       149 L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L  224 (332)
T 2ft3_A          149 MNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGL  224 (332)
T ss_dssp             CCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBC
T ss_pred             CCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence            9999999998853  456667666 89999999998844 454433  78999999999998777778899999999999


Q ss_pred             cCCcccccccccccCCCCCCEEECCCCcCcceechhHhhhcccCCCeeeccCccccccceeeecccccc-ccccceeeec
Q 048333          307 AKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDT-TSQKIQYRGL  385 (413)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~-~~~~L~~L~l  385 (413)
                      ++|.+++..+..+..+++|+.|++++|.+.. ++ . .+..+++|++|++++|.++.++...+...... ..++|+.|++
T Consensus       225 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-lp-~-~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l  301 (332)
T 2ft3_A          225 GHNQIRMIENGSLSFLPTLRELHLDNNKLSR-VP-A-GLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISL  301 (332)
T ss_dssp             CSSCCCCCCTTGGGGCTTCCEEECCSSCCCB-CC-T-TGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEEC
T ss_pred             CCCcCCcCChhHhhCCCCCCEEECCCCcCee-cC-h-hhhcCccCCEEECCCCCCCccChhHccccccccccccccceEe
Confidence            9999987777788999999999999999983 43 2 57889999999999999887765443322111 3678999999


Q ss_pred             cCCCCC---CcchHhhcCCCCcEEeCCCCC
Q 048333          386 RSCNLT---KFPNFLENQNHLVILNLSDNR  412 (413)
Q Consensus       386 ~~~~l~---~l~~~~~~l~~L~~L~l~~n~  412 (413)
                      ++|.+.   ..|..+..+++|+.+++++|.
T Consensus       302 ~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          302 FNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             CSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             ecCcccccccCcccccccchhhhhhccccc
Confidence            999987   456778899999999999985

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.97  E-value=2.7e-28  Score=232.99  Aligned_cols=301  Identities=20%  Similarity=0.237  Sum_probs=162.9

Q ss_pred             CCCceEEEecCCCccccccCCccccccccccceeeccccCCCCCCCCccccCcCccccCCcchhhhhhcCCCCcEEEcCC
Q 048333           41 NTGHVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENLFEKLSNLKTLNLGD  120 (413)
Q Consensus        41 ~~~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~L~~L~l~~  120 (413)
                      ..+++++|+++++.+.+.  +  .+..+++|++|++++|.+.+..                     ++.+++|++|++++
T Consensus        40 ~l~~L~~L~Ls~n~l~~~--~--~l~~l~~L~~L~Ls~n~l~~~~---------------------~~~l~~L~~L~Ls~   94 (457)
T 3bz5_A           40 QLATLTSLDCHNSSITDM--T--GIEKLTGLTKLICTSNNITTLD---------------------LSQNTNLTYLACDS   94 (457)
T ss_dssp             HHTTCCEEECCSSCCCCC--T--TGGGCTTCSEEECCSSCCSCCC---------------------CTTCTTCSEEECCS
T ss_pred             HcCCCCEEEccCCCcccC--h--hhcccCCCCEEEccCCcCCeEc---------------------cccCCCCCEEECcC
Confidence            357899999999988753  2  6889999999999999887642                     33455566666666


Q ss_pred             ccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCcccccccccccccccccccc
Q 048333          121 VSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMG  200 (413)
Q Consensus       121 ~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~  200 (413)
                      |.+.+. +  +..+++|++|++++|.++.            ++  +..+++|++|++++|.+++.            .+.
T Consensus        95 N~l~~~-~--~~~l~~L~~L~L~~N~l~~------------l~--~~~l~~L~~L~l~~N~l~~l------------~l~  145 (457)
T 3bz5_A           95 NKLTNL-D--VTPLTKLTYLNCDTNKLTK------------LD--VSQNPLLTYLNCARNTLTEI------------DVS  145 (457)
T ss_dssp             SCCSCC-C--CTTCTTCCEEECCSSCCSC------------CC--CTTCTTCCEEECTTSCCSCC------------CCT
T ss_pred             CCCcee-e--cCCCCcCCEEECCCCcCCe------------ec--CCCCCcCCEEECCCCcccee------------ccc
Confidence            555532 2  5555666666666655541            22  45555666666666555531            144


Q ss_pred             CCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccCCCCCeE
Q 048333          201 NLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFL  280 (413)
Q Consensus       201 ~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  280 (413)
                      .+++|++|++++|.....+  .+..+++|+.|++++|.++. ++  +..+++|+.|++++|.+.+.   .+..+++|+.|
T Consensus       146 ~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L  217 (457)
T 3bz5_A          146 HNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFL  217 (457)
T ss_dssp             TCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEE
T ss_pred             cCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEE
Confidence            5555666666555332222  24455556666666555543 22  44555566666655555332   24555556666


Q ss_pred             ecCCcccCCcccccccCCCCCcEEEccCCcccccccccccCCC-------CCCEEECCCCcCcceechhHhhhcccCCCe
Q 048333          281 FLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLT-------QLVVLDMAQNSYGGTVELDVLLTSWKNLEA  353 (413)
Q Consensus       281 ~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~-------~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~  353 (413)
                      ++++|.+.+ .+  +..+++|+.|++++|.+++..+..+..+.       +|+.|++++|...+..+    ...+++|+.
T Consensus       218 ~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~----~~~l~~L~~  290 (457)
T 3bz5_A          218 DCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ----AEGCRKIKE  290 (457)
T ss_dssp             ECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE----CTTCTTCCC
T ss_pred             ECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc----ccccccCCE
Confidence            666665553 22  44555566666666555543222222211       23334444444333333    234566666


Q ss_pred             eeccCcccc-ccceeeeccccc--c-ccccceeeeccCCCCCCcchHhhcCCCCcEEeCCCCCC
Q 048333          354 LDISLNRSS-VLTKATFDATTD--T-TSQKIQYRGLRSCNLTKFPNFLENQNHLVILNLSDNRI  413 (413)
Q Consensus       354 L~l~~~~i~-~l~~~~~~~~~~--~-~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i  413 (413)
                      |++++|... .++. .......  + .+++|++|++++|+++.++  +.++++|+.|++++|+|
T Consensus       291 L~Ls~n~~l~~l~~-~~~~L~~L~l~~~~~L~~L~L~~N~l~~l~--l~~l~~L~~L~l~~N~l  351 (457)
T 3bz5_A          291 LDVTHNTQLYLLDC-QAAGITELDLSQNPKLVYLYLNNTELTELD--VSHNTKLKSLSCVNAHI  351 (457)
T ss_dssp             CCCTTCTTCCEEEC-TTCCCSCCCCTTCTTCCEEECTTCCCSCCC--CTTCTTCSEEECCSSCC
T ss_pred             EECCCCcccceecc-CCCcceEechhhcccCCEEECCCCcccccc--cccCCcCcEEECCCCCC
Confidence            666666521 1110 0000000  1 4456667777777766653  56667777777776654

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.97  E-value=2.9e-28  Score=234.28  Aligned_cols=310  Identities=23%  Similarity=0.294  Sum_probs=243.4

Q ss_pred             cccccccceeeccccCCCCCCCCccccCcCccccCCcchhhh--hhcCCCCcEEEcCCccCCCCcCccccCCCCCcEEEc
Q 048333           65 LFKLVHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENL--FEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSL  142 (413)
Q Consensus        65 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  142 (413)
                      ...+++++.|+++++.+....-...+.+|+.|++.++.+...  +..+++|++|++++|.+.+..+  +.++++|++|++
T Consensus        42 ~~~l~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L  119 (466)
T 1o6v_A           42 QTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL  119 (466)
T ss_dssp             HHHHHTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred             hhHhccccEEecCCCCCccCcchhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCccccChh--hcCCCCCCEEEC
Confidence            346889999999999877532224567888888886665432  7889999999999999986544  889999999999


Q ss_pred             cCCcccccchhhhhhcccCCCccccCCCCccEEECCCCcccccccccc------------ccccccccccCCCCccEEeC
Q 048333          143 RNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFR------------CFGELPISMGNLGSLKELDL  210 (413)
Q Consensus       143 ~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~------------~~~~~~~~~~~l~~L~~L~l  210 (413)
                      ++|.+..            ++. +.++++|++|++++|.+.+... +.            ..... ..+..+++|+.|++
T Consensus       120 ~~n~l~~------------~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~~~~~~-~~~~~l~~L~~L~l  184 (466)
T 1o6v_A          120 FNNQITD------------IDP-LKNLTNLNRLELSSNTISDISA-LSGLTSLQQLSFGNQVTDL-KPLANLTTLERLDI  184 (466)
T ss_dssp             CSSCCCC------------CGG-GTTCTTCSEEEEEEEEECCCGG-GTTCTTCSEEEEEESCCCC-GGGTTCTTCCEEEC
T ss_pred             CCCCCCC------------ChH-HcCCCCCCEEECCCCccCCChh-hccCCcccEeecCCcccCc-hhhccCCCCCEEEC
Confidence            9999873            222 7888999999999988776422 10            00011 23677889999999


Q ss_pred             CCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccCCCCCeEecCCcccCCc
Q 048333          211 SQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGD  290 (413)
Q Consensus       211 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  290 (413)
                      ++|.+.. + ..+..+++|+.|++++|.+....+  +..+++|+.|++++|.+.+ . ..+..+++|+.|++++|.+.+.
T Consensus       185 ~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~  258 (466)
T 1o6v_A          185 SSNKVSD-I-SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNL  258 (466)
T ss_dssp             CSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCC
T ss_pred             cCCcCCC-C-hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCccc-c-hhhhcCCCCCEEECCCCccccc
Confidence            9998764 3 347888999999999998875444  6678899999999998744 3 3578889999999999998754


Q ss_pred             ccccccCCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcceechhHhhhcccCCCeeeccCccccccceeeec
Q 048333          291 LLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTKATFD  370 (413)
Q Consensus       291 ~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~  370 (413)
                      .+  +..+++|+.|++++|.+++..+  +..+++|+.|++++|.+.+..+    +..+++|++|++++|.++.+.+    
T Consensus       259 ~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~----~~~l~~L~~L~L~~n~l~~~~~----  326 (466)
T 1o6v_A          259 AP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP----ISNLKNLTYLTLYFNNISDISP----  326 (466)
T ss_dssp             GG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG----GGGCTTCSEEECCSSCCSCCGG----
T ss_pred             hh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh----hcCCCCCCEEECcCCcCCCchh----
Confidence            33  7889999999999999885443  7789999999999999875433    6789999999999999765543    


Q ss_pred             cccccccccceeeeccCCCCCCcchHhhcCCCCcEEeCCCCCC
Q 048333          371 ATTDTTSQKIQYRGLRSCNLTKFPNFLENQNHLVILNLSDNRI  413 (413)
Q Consensus       371 ~~~~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i  413 (413)
                         ...+++|++|++++|.++.++ .+..+++|+.|++++|++
T Consensus       327 ---~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l  365 (466)
T 1o6v_A          327 ---VSSLTKLQRLFFYNNKVSDVS-SLANLTNINWLSAGHNQI  365 (466)
T ss_dssp             ---GGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCC
T ss_pred             ---hccCccCCEeECCCCccCCch-hhccCCCCCEEeCCCCcc
Confidence               126789999999999999874 688999999999999985

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.97  E-value=1.1e-28  Score=244.23  Aligned_cols=289  Identities=20%  Similarity=0.170  Sum_probs=240.3

Q ss_pred             ccccccceeeccccCCCCCCCCccccCcCccccCCcchhhhhhcCCCCcEEEcCCccCCCCcCccccCCCCCcEEEccCC
Q 048333           66 FKLVHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENLFEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNC  145 (413)
Q Consensus        66 ~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  145 (413)
                      ..+.+++.++++++.+..  +|                +..+..+++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus        48 l~l~~l~~l~l~~~~l~~--lp----------------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  109 (597)
T 3oja_B           48 ITLNNQKIVTFKNSTMRK--LP----------------AALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN  109 (597)
T ss_dssp             GGGCCCSEEEESSCEESE--EC----------------THHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             ccCCCceEEEeeCCCCCC--cC----------------HHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCC
Confidence            356788888888876653  22                235788999999999999998777778999999999999999


Q ss_pred             cccccchhhhhhcccCCCccccCCCCccEEECCCCccccccccccccccccccccCCCCccEEeCCCCcCCCcchhhhhC
Q 048333          146 ELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRN  225 (413)
Q Consensus       146 ~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~  225 (413)
                      .+.           +..+..++++++|++|++++|.++..         .+..+..+++|+.|++++|.+....+..+..
T Consensus       110 ~l~-----------~~~~~~~~~l~~L~~L~L~~n~l~~l---------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  169 (597)
T 3oja_B          110 AIR-----------YLPPHVFQNVPLLTVLVLERNDLSSL---------PRGIFHNTPKLTTLSMSNNNLERIEDDTFQA  169 (597)
T ss_dssp             CCC-----------CCCTTTTTTCTTCCEEECCSSCCCCC---------CTTTTTTCTTCCEEECCSSCCCBCCTTTTTT
T ss_pred             cCC-----------CCCHHHHcCCCCCCEEEeeCCCCCCC---------CHHHhccCCCCCEEEeeCCcCCCCChhhhhc
Confidence            987           44556789999999999999999853         2234688999999999999998777888999


Q ss_pred             CCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccCCCCCeEecCCcccCCcccccccCCCCCcEEE
Q 048333          226 LFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIY  305 (413)
Q Consensus       226 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~  305 (413)
                      +++|+.|++++|.+... +  +..+++|+.|++++|.+.+     +...++|+.|++++|.+... +..  ..++|+.|+
T Consensus       170 l~~L~~L~L~~N~l~~~-~--~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~-~~~--~~~~L~~L~  238 (597)
T 3oja_B          170 TTSLQNLQLSSNRLTHV-D--LSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVV-RGP--VNVELTILK  238 (597)
T ss_dssp             CTTCCEEECTTSCCSBC-C--GGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSCCCEE-ECS--CCSCCCEEE
T ss_pred             CCcCcEEECcCCCCCCc-C--hhhhhhhhhhhcccCcccc-----ccCCchhheeeccCCccccc-ccc--cCCCCCEEE
Confidence            99999999999988743 2  5567899999999997743     34557899999999998743 222  247899999


Q ss_pred             ccCCcccccccccccCCCCCCEEECCCCcCcceechhHhhhcccCCCeeeccCccccccceeeeccccccccccceeeec
Q 048333          306 IAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGL  385 (413)
Q Consensus       306 L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~L~~L~l  385 (413)
                      +++|.+++  +..+..+++|+.|++++|.+.+..+ . .+..+++|++|++++|.++.++...      ..+++|++|++
T Consensus       239 L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~-~-~~~~l~~L~~L~Ls~N~l~~l~~~~------~~l~~L~~L~L  308 (597)
T 3oja_B          239 LQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMY-H-PFVKMQRLERLYISNNRLVALNLYG------QPIPTLKVLDL  308 (597)
T ss_dssp             CCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEES-G-GGTTCSSCCEEECTTSCCCEEECSS------SCCTTCCEEEC
T ss_pred             CCCCCCCC--ChhhccCCCCCEEECCCCccCCCCH-H-HhcCccCCCEEECCCCCCCCCCccc------ccCCCCcEEEC
Confidence            99999985  3678899999999999999987665 4 6889999999999999976543222      15789999999


Q ss_pred             cCCCCCCcchHhhcCCCCcEEeCCCCCC
Q 048333          386 RSCNLTKFPNFLENQNHLVILNLSDNRI  413 (413)
Q Consensus       386 ~~~~l~~l~~~~~~l~~L~~L~l~~n~i  413 (413)
                      ++|.++.+|..+..+++|+.|++++|+|
T Consensus       309 s~N~l~~i~~~~~~l~~L~~L~L~~N~l  336 (597)
T 3oja_B          309 SHNHLLHVERNQPQFDRLENLYLDHNSI  336 (597)
T ss_dssp             CSSCCCCCGGGHHHHTTCSEEECCSSCC
T ss_pred             CCCCCCccCcccccCCCCCEEECCCCCC
Confidence            9999999999999999999999999986

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.96  E-value=4.7e-28  Score=222.34  Aligned_cols=289  Identities=17%  Similarity=0.156  Sum_probs=220.2

Q ss_pred             eEEEecCCCccccccCCccccccccccceeeccccCCCCCCCCccccCcCccccCCcchhhhhhcCCCCcEEEcCCccCC
Q 048333           45 VIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENLFEKLSNLKTLNLGDVSID  124 (413)
Q Consensus        45 l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~L~~L~l~~~~~~  124 (413)
                      ++.++++++.+.. ++.  .+  .++|++|++++|.+...  +                +..+..+++|++|++++|.+.
T Consensus        33 l~~l~~~~~~l~~-lp~--~~--~~~l~~L~L~~n~i~~~--~----------------~~~~~~l~~L~~L~L~~n~l~   89 (330)
T 1xku_A           33 LRVVQCSDLGLEK-VPK--DL--PPDTALLDLQNNKITEI--K----------------DGDFKNLKNLHTLILINNKIS   89 (330)
T ss_dssp             TTEEECTTSCCCS-CCC--SC--CTTCCEEECCSSCCCCB--C----------------TTTTTTCTTCCEEECCSSCCC
T ss_pred             CeEEEecCCCccc-cCc--cC--CCCCeEEECCCCcCCEe--C----------------hhhhccCCCCCEEECCCCcCC
Confidence            4455666665542 322  22  36899999999987753  1                224677899999999999998


Q ss_pred             CCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCccccccccccccccccccccCCCC
Q 048333          125 STIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGS  204 (413)
Q Consensus       125 ~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~l~~  204 (413)
                      +..|..+..+++|++|++++|.++.            +|..+.  ++|++|++++|.++..         .+..+..+++
T Consensus        90 ~~~~~~~~~l~~L~~L~Ls~n~l~~------------l~~~~~--~~L~~L~l~~n~l~~~---------~~~~~~~l~~  146 (330)
T 1xku_A           90 KISPGAFAPLVKLERLYLSKNQLKE------------LPEKMP--KTLQELRVHENEITKV---------RKSVFNGLNQ  146 (330)
T ss_dssp             CBCTTTTTTCTTCCEEECCSSCCSB------------CCSSCC--TTCCEEECCSSCCCBB---------CHHHHTTCTT
T ss_pred             eeCHHHhcCCCCCCEEECCCCcCCc------------cChhhc--ccccEEECCCCccccc---------CHhHhcCCcc
Confidence            7778889999999999999998863            444443  7899999999988854         3345788999


Q ss_pred             ccEEeCCCCcCCC--cchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccCCCCCeEec
Q 048333          205 LKELDLSQNGFFG--ELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFL  282 (413)
Q Consensus       205 L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  282 (413)
                      |+.|++++|.+..  ..+..+..+++|++|++++|.+. .+|..+.  ++|++|++++|.+.+..+..+..+++|+.|++
T Consensus       147 L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L  223 (330)
T 1xku_A          147 MIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGL  223 (330)
T ss_dssp             CCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEEC
T ss_pred             ccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence            9999999998853  45677888999999999999887 3554443  78999999999987777788999999999999


Q ss_pred             CCcccCCcccccccCCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcceechhHhhh------cccCCCeeec
Q 048333          283 GFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLT------SWKNLEALDI  356 (413)
Q Consensus       283 ~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~------~~~~L~~L~l  356 (413)
                      ++|.+.+..+..+..+++|+.|++++|.++ .+|..+..+++|++|++++|.+.+... . .+.      ..+.++.|++
T Consensus       224 s~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~-~-~f~~~~~~~~~~~l~~l~l  300 (330)
T 1xku_A          224 SFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGS-N-DFCPPGYNTKKASYSGVSL  300 (330)
T ss_dssp             CSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCT-T-SSSCSSCCTTSCCCSEEEC
T ss_pred             CCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccCh-h-hcCCcccccccccccceEe
Confidence            999988766667888999999999999998 777788899999999999999875433 2 232      2477899999


Q ss_pred             cCccccccceeeecccccc-ccccceeeeccCCC
Q 048333          357 SLNRSSVLTKATFDATTDT-TSQKIQYRGLRSCN  389 (413)
Q Consensus       357 ~~~~i~~l~~~~~~~~~~~-~~~~L~~L~l~~~~  389 (413)
                      ++|++....    -.+... .+.+++.+++++|+
T Consensus       301 ~~N~~~~~~----i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          301 FSNPVQYWE----IQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             CSSSSCGGG----SCGGGGTTCCCGGGEEC----
T ss_pred             ecCcccccc----cCccccccccceeEEEecccC
Confidence            999965421    111222 67789999998874

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.96  E-value=3.3e-29  Score=246.12  Aligned_cols=200  Identities=24%  Similarity=0.288  Sum_probs=148.6

Q ss_pred             CcccceEEeeCCCCceEEEecCCCccccccCCccccccccccceeeccccCCCCCCCCc---cccCcCccccCCcch---
Q 048333           30 CYSWDVVHCNKNTGHVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPP---EIINLSRLELQKPSF---  103 (413)
Q Consensus        30 ~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~~~i---  103 (413)
                      .|.|.++ |+.          +++.++ .+|.  .+  .++|++|++++|.+... .+.   .+.+|+.|++.++.+   
T Consensus         3 ~C~~~~~-c~~----------~~~~l~-~ip~--~~--~~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~~   65 (549)
T 2z81_A            3 SCDASGV-CDG----------RSRSFT-SIPS--GL--TAAMKSLDLSFNKITYI-GHGDLRACANLQVLILKSSRINTI   65 (549)
T ss_dssp             EECTTSE-EEC----------TTSCCS-SCCS--CC--CTTCCEEECCSSCCCEE-CSSTTSSCTTCCEEECTTSCCCEE
T ss_pred             cCCCCce-EEC----------CCCccc-cccc--cC--CCCccEEECcCCccCcc-ChhhhhcCCcccEEECCCCCcCcc
Confidence            4888887 742          344443 2333  33  27999999999998764 333   455677777776555   


Q ss_pred             -hhhhhcCCCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCcc
Q 048333          104 -ENLFEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNEL  182 (413)
Q Consensus       104 -~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i  182 (413)
                       +..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+..+          ..+..+.++++|++|++++|.+
T Consensus        66 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~----------~~~~~~~~l~~L~~L~L~~n~~  135 (549)
T 2z81_A           66 EGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTL----------GVTSLFPNLTNLQTLRIGNVET  135 (549)
T ss_dssp             CTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSS----------CSSCSCTTCTTCCEEEEEESSS
T ss_pred             ChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCccccc----------chhhhhhccCCccEEECCCCcc
Confidence             34578889999999999999877777788999999999999988632          3456788899999999999874


Q ss_pred             cccccccccccccc-ccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCC
Q 048333          183 QGEAASFRCFGELP-ISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSC  261 (413)
Q Consensus       183 ~~~~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~  261 (413)
                      ...         +| ..+..+++|++|++++|.+....|..+..+++|+.|+++++.........+..+++|++|++++|
T Consensus       136 ~~~---------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n  206 (549)
T 2z81_A          136 FSE---------IRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDT  206 (549)
T ss_dssp             CCE---------ECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESC
T ss_pred             ccc---------cCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCC
Confidence            322         33 46788899999999999988778888889999999999988765322222345788999999888


Q ss_pred             cccc
Q 048333          262 GFWS  265 (413)
Q Consensus       262 ~~~~  265 (413)
                      .+.+
T Consensus       207 ~l~~  210 (549)
T 2z81_A          207 NLAR  210 (549)
T ss_dssp             BCTT
T ss_pred             cccc
Confidence            7644

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.96  E-value=4.5e-29  Score=227.00  Aligned_cols=249  Identities=26%  Similarity=0.382  Sum_probs=220.7

Q ss_pred             CCCcEEEcCCccCCC--CcCccccCCCCCcEEEccC-CcccccchhhhhhcccCCCccccCCCCccEEECCCCccccccc
Q 048333          111 SNLKTLNLGDVSIDS--TIPHNIKNLSSLTFVSLRN-CELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAA  187 (413)
Q Consensus       111 ~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~-~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~  187 (413)
                      .++++|+++++.+.+  .+|..+.++++|++|++++ +.+.           +.+|..+.++++|++|++++|.+++.  
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~-----------~~~p~~l~~l~~L~~L~Ls~n~l~~~--  116 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV-----------GPIPPAIAKLTQLHYLYITHTNVSGA--  116 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEE-----------SCCCGGGGGCTTCSEEEEEEECCEEE--
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCccc-----------ccCChhHhcCCCCCEEECcCCeeCCc--
Confidence            689999999999988  7899999999999999995 7776           57888899999999999999998754  


Q ss_pred             cccccccccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCC-CCcEEEecCCccccc
Q 048333          188 SFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFS-SLKLLNLRSCGFWSK  266 (413)
Q Consensus       188 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~  266 (413)
                             +|..+..+++|++|++++|.+...+|..+..+++|++|++++|.+.+.+|..+..++ +|+.|++++|.+.+.
T Consensus       117 -------~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~  189 (313)
T 1ogq_A          117 -------IPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGK  189 (313)
T ss_dssp             -------CCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEE
T ss_pred             -------CCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeecc
Confidence                   677889999999999999999878899999999999999999999878888888887 999999999999888


Q ss_pred             cchhhccCCCCCeEecCCcccCCcccccccCCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcceechhHhhh
Q 048333          267 VPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLT  346 (413)
Q Consensus       267 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~  346 (413)
                      .+..+..++ |+.|++++|.+.+..+..+..+++|+.|++++|.+++..+. +..+++|++|++++|.+.+..+ . .+.
T Consensus       190 ~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p-~-~l~  265 (313)
T 1ogq_A          190 IPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLP-Q-GLT  265 (313)
T ss_dssp             CCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCC-G-GGG
T ss_pred             CChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCC-h-HHh
Confidence            888888887 99999999999877888899999999999999999865554 7789999999999999987666 3 688


Q ss_pred             cccCCCeeeccCccccccceeeeccccccccccceeeeccCCC
Q 048333          347 SWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCN  389 (413)
Q Consensus       347 ~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~L~~L~l~~~~  389 (413)
                      .+++|++|++++|.      ..+..|....+++|+.+++++|.
T Consensus       266 ~l~~L~~L~Ls~N~------l~~~ip~~~~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          266 QLKFLHSLNVSFNN------LCGEIPQGGNLQRFDVSAYANNK  302 (313)
T ss_dssp             GCTTCCEEECCSSE------EEEECCCSTTGGGSCGGGTCSSS
T ss_pred             cCcCCCEEECcCCc------ccccCCCCccccccChHHhcCCC
Confidence            99999999999999      45555554578899999999997

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.96  E-value=1.1e-31  Score=258.01  Aligned_cols=356  Identities=18%  Similarity=0.167  Sum_probs=248.6

Q ss_pred             CceEEEecCCCccccccCCccccccccccceeeccccCCCCC---CCCc---cccCcCccccCCcchhh-----hhhcCC
Q 048333           43 GHVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSS---EIPP---EIINLSRLELQKPSFEN-----LFEKLS  111 (413)
Q Consensus        43 ~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~---~~~~---~~~~L~~L~l~~~~i~~-----~~~~~~  111 (413)
                      +++++|+++++.+...... ..+..+++|++|++++|.+...   .++.   .+.+|+.|++.++.+.+     ....++
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~-~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~   81 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWA-ELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ   81 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHH-HHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred             ccceehhhhhcccCchhHH-HHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence            5788999998887643322 1367889999999999987642   1222   24677788888776644     234455


Q ss_pred             ----CCcEEEcCCccCCC----CcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCcc-ccCCCCccEEECCCCcc
Q 048333          112 ----NLKTLNLGDVSIDS----TIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSS-LGNLSKLLHLDLSLNEL  182 (413)
Q Consensus       112 ----~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~-l~~~~~L~~L~l~~~~i  182 (413)
                          +|++|++++|.+..    .++..+..+++|++|++++|.+.+...       ..+... ....++|++|++++|.+
T Consensus        82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~-------~~l~~~l~~~~~~L~~L~L~~n~l  154 (461)
T 1z7x_W           82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGL-------QLLCEGLLDPQCRLEKLQLEYCSL  154 (461)
T ss_dssp             STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHH-------HHHHHHHTSTTCCCCEEECTTSCC
T ss_pred             hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHH-------HHHHHHHhcCCCcceEEECCCCCC
Confidence                69999999998874    457788889999999999998764211       011111 22356799999999988


Q ss_pred             ccccccccccccccccccCCCCccEEeCCCCcCCCcchhhhh-----CCCCCCEEEccCCcCccc----CCcccCCCCCC
Q 048333          183 QGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIR-----NLFSLEKLDLSFNKLSGE----FPWSTGNFSSL  253 (413)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~-----~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L  253 (413)
                      ++....     .++..+..+++|++|++++|.+....+..+.     ..++|+.|++++|.++..    ++..+..+++|
T Consensus       155 ~~~~~~-----~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L  229 (461)
T 1z7x_W          155 SAASCE-----PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASL  229 (461)
T ss_dssp             BGGGHH-----HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTC
T ss_pred             CHHHHH-----HHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCc
Confidence            764321     2455667788999999999887544333332     356899999999987643    45566678899


Q ss_pred             cEEEecCCcccccc-----chhhccCCCCCeEecCCcccCCc----ccccccCCCCCcEEEccCCccccccccccc----
Q 048333          254 KLLNLRSCGFWSKV-----PHSIGNFTRLQFLFLGFNNFSGD----LLGSIGNLRSLEVIYIAKCNFSGQITSSLR----  320 (413)
Q Consensus       254 ~~L~l~~~~~~~~~-----~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~----  320 (413)
                      ++|++++|.+.+..     +..+..+++|++|++++|.+.+.    .+..+..+++|+.|++++|.+++..+..+.    
T Consensus       230 ~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~  309 (461)
T 1z7x_W          230 RELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLL  309 (461)
T ss_dssp             CEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHT
T ss_pred             cEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhc
Confidence            99999998875432     22233578899999999988753    345566688999999999988644333222    


Q ss_pred             -CCCCCCEEECCCCcCcceec--hhHhhhcccCCCeeeccCccccccceeeecccccc--ccccceeeeccCCCCC----
Q 048333          321 -NLTQLVVLDMAQNSYGGTVE--LDVLLTSWKNLEALDISLNRSSVLTKATFDATTDT--TSQKIQYRGLRSCNLT----  391 (413)
Q Consensus       321 -~~~~L~~L~l~~n~~~~~~~--~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~--~~~~L~~L~l~~~~l~----  391 (413)
                       ..++|++|++++|.+.+...  +...+..+++|++|++++|.+++.+...  ....+  ..++|++|++++|.++    
T Consensus       310 ~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~--l~~~l~~~~~~L~~L~L~~n~i~~~~~  387 (461)
T 1z7x_W          310 EPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRE--LCQGLGQPGSVLRVLWLADCDVSDSSC  387 (461)
T ss_dssp             STTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHH--HHHHHTSTTCCCCEEECTTSCCCHHHH
T ss_pred             cCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHH--HHHHHcCCCCceEEEECCCCCCChhhH
Confidence             23689999999998875421  2235677899999999999854432111  11111  2568999999999998    


Q ss_pred             -CcchHhhcCCCCcEEeCCCCCC
Q 048333          392 -KFPNFLENQNHLVILNLSDNRI  413 (413)
Q Consensus       392 -~l~~~~~~l~~L~~L~l~~n~i  413 (413)
                       .+|..+..+++|+.|++++|+|
T Consensus       388 ~~l~~~l~~~~~L~~L~l~~N~i  410 (461)
T 1z7x_W          388 SSLAATLLANHSLRELDLSNNCL  410 (461)
T ss_dssp             HHHHHHHHHCCCCCEEECCSSSC
T ss_pred             HHHHHHHHhCCCccEEECCCCCC
Confidence             6788888899999999999875

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.96  E-value=1.9e-27  Score=218.41  Aligned_cols=288  Identities=18%  Similarity=0.173  Sum_probs=205.2

Q ss_pred             eEEEecCCCccccccCCccccccccccceeeccccCCCCCCCCccccCcCccccCCcchhhhhhcCCCCcEEEcCCccCC
Q 048333           45 VIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENLFEKLSNLKTLNLGDVSID  124 (413)
Q Consensus        45 l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~L~~L~l~~~~~~  124 (413)
                      ++.++++++.+. .++.  .+  .++|++|++++|.+...  +                +..+..+++|++|++++|.+.
T Consensus        35 l~~l~~~~~~l~-~ip~--~~--~~~l~~L~l~~n~i~~~--~----------------~~~~~~l~~L~~L~L~~n~l~   91 (332)
T 2ft3_A           35 LRVVQCSDLGLK-AVPK--EI--SPDTTLLDLQNNDISEL--R----------------KDDFKGLQHLYALVLVNNKIS   91 (332)
T ss_dssp             TTEEECCSSCCS-SCCS--CC--CTTCCEEECCSSCCCEE--C----------------TTTTTTCTTCCEEECCSSCCC
T ss_pred             CCEEECCCCCcc-ccCC--CC--CCCCeEEECCCCcCCcc--C----------------HhHhhCCCCCcEEECCCCccC
Confidence            445666666554 2333  33  36888999988877642  1                224667888888999888888


Q ss_pred             CCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCccccccccccccccccccccCCCC
Q 048333          125 STIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGS  204 (413)
Q Consensus       125 ~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~l~~  204 (413)
                      +..|..+..+++|++|++++|.+.            .+|..+.  ++|++|++++|.++..         .+..+..+++
T Consensus        92 ~~~~~~~~~l~~L~~L~L~~n~l~------------~l~~~~~--~~L~~L~l~~n~i~~~---------~~~~~~~l~~  148 (332)
T 2ft3_A           92 KIHEKAFSPLRKLQKLYISKNHLV------------EIPPNLP--SSLVELRIHDNRIRKV---------PKGVFSGLRN  148 (332)
T ss_dssp             EECGGGSTTCTTCCEEECCSSCCC------------SCCSSCC--TTCCEEECCSSCCCCC---------CSGGGSSCSS
T ss_pred             ccCHhHhhCcCCCCEEECCCCcCC------------ccCcccc--ccCCEEECCCCccCcc---------CHhHhCCCcc
Confidence            766778888888999999888876            3444443  7888888888888743         2344778888


Q ss_pred             ccEEeCCCCcCCC--cchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccCCCCCeEec
Q 048333          205 LKELDLSQNGFFG--ELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFL  282 (413)
Q Consensus       205 L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  282 (413)
                      |+.|++++|.+..  ..+..+..+ +|+.|++++|.+.. +|..+.  ++|++|++++|.+.+..+..+..+++|++|++
T Consensus       149 L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L  224 (332)
T 2ft3_A          149 MNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGL  224 (332)
T ss_dssp             CCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBC
T ss_pred             CCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence            8889988888753  445566666 88888888888774 454433  68888888888886666677888888999999


Q ss_pred             CCcccCCcccccccCCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcceechhHhhhc------ccCCCeeec
Q 048333          283 GFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTS------WKNLEALDI  356 (413)
Q Consensus       283 ~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~------~~~L~~L~l  356 (413)
                      ++|.+.+..+..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|.+.+... . .+..      .+.|+.|++
T Consensus       225 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~-~-~~~~~~~~~~~~~l~~L~l  301 (332)
T 2ft3_A          225 GHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGV-N-DFCPVGFGVKRAYYNGISL  301 (332)
T ss_dssp             CSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCT-T-SSSCSSCCSSSCCBSEEEC
T ss_pred             CCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccCh-h-HccccccccccccccceEe
Confidence            988888766667888889999999988887 677778888899999999888875433 2 2322      466888999


Q ss_pred             cCccccccceeeecccccc-ccccceeeeccCCC
Q 048333          357 SLNRSSVLTKATFDATTDT-TSQKIQYRGLRSCN  389 (413)
Q Consensus       357 ~~~~i~~l~~~~~~~~~~~-~~~~L~~L~l~~~~  389 (413)
                      ++|++...+    ..+... .+++|+.+++++|+
T Consensus       302 ~~N~~~~~~----~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          302 FNNPVPYWE----VQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             CSSSSCGGG----SCGGGGTTBCCSTTEEC----
T ss_pred             ecCcccccc----cCcccccccchhhhhhccccc
Confidence            988854211    111112 57788888888764

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.96  E-value=1.5e-28  Score=224.90  Aligned_cols=250  Identities=24%  Similarity=0.332  Sum_probs=150.6

Q ss_pred             cCCCCCCCCC-CCCCCCCCcccceEEee--------CCCCceEEEecCCCccccccCCccccccccccceeeccccCCCC
Q 048333           13 DCRPTMASWK-PEEGSVDCYSWDVVHCN--------KNTGHVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNS   83 (413)
Q Consensus        13 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~--------~~~~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~   83 (413)
                      |+....+.|. +..+..++|.|.|+.|.        ...++++.|+++++.+. .++.  .+..+++|++|++++|.+..
T Consensus        42 ~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~--~l~~l~~L~~L~L~~n~l~~  118 (328)
T 4fcg_A           42 DRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPD--QAFRLSHLQHMTIDAAGLME  118 (328)
T ss_dssp             CCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCS--CGGGGTTCSEEEEESSCCCC
T ss_pred             CchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcCh--hhhhCCCCCEEECCCCCccc
Confidence            3444456784 00127899999999983        24578899999998886 5555  68889999999999888762


Q ss_pred             CCCCccccCcCccccCCcchhhhhhcCCCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCC
Q 048333           84 SEIPPEIINLSRLELQKPSFENLFEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIP  163 (413)
Q Consensus        84 ~~~~~~~~~L~~L~l~~~~i~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~  163 (413)
                        +|.                 .++.+++|++|++++|.+. .+|..+..+++|++|++++|.+.           +.+|
T Consensus       119 --lp~-----------------~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~-----------~~~p  167 (328)
T 4fcg_A          119 --LPD-----------------TMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPEL-----------TELP  167 (328)
T ss_dssp             --CCS-----------------CGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTC-----------CCCC
T ss_pred             --hhH-----------------HHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCc-----------cccC
Confidence              442                 3566888999999998887 67888888899999999887765           3455


Q ss_pred             ccccC---------CCCccEEECCCCccccccccccccccccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEc
Q 048333          164 SSLGN---------LSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDL  234 (413)
Q Consensus       164 ~~l~~---------~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l  234 (413)
                      ..+..         +++|++|++++|.++          .+|..+..+++|++|++++|.+. .+|..+..+++|++|++
T Consensus       168 ~~~~~~~~~~~~~~l~~L~~L~L~~n~l~----------~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~L  236 (328)
T 4fcg_A          168 EPLASTDASGEHQGLVNLQSLRLEWTGIR----------SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDL  236 (328)
T ss_dssp             SCSEEEC-CCCEEESTTCCEEEEEEECCC----------CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEEC
T ss_pred             hhHhhccchhhhccCCCCCEEECcCCCcC----------cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEEC
Confidence            54432         555555555555554          13444555555555555555554 23334455555555555


Q ss_pred             cCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccCCCCCeEecCCcccCCcccccccCCCCCcEEEcc
Q 048333          235 SFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIA  307 (413)
Q Consensus       235 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~  307 (413)
                      ++|.+.+.+|..+..+++|+.|++++|.+.+..|..+..+++|++|++++|.+.+..|..+..+++++.+.+.
T Consensus       237 s~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~  309 (328)
T 4fcg_A          237 RGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP  309 (328)
T ss_dssp             TTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECC
T ss_pred             cCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCC
Confidence            5554444444444444444444444444444444444444444444444444433444444444444444443

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.95  E-value=4.3e-27  Score=224.43  Aligned_cols=215  Identities=21%  Similarity=0.188  Sum_probs=84.6

Q ss_pred             CceEEEecCCCccccccCCccccccccccceeeccccCCCCCCCCccccCc----------------CccccCCcchhhh
Q 048333           43 GHVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPPEIINL----------------SRLELQKPSFENL  106 (413)
Q Consensus        43 ~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L----------------~~L~l~~~~i~~~  106 (413)
                      .++++|+++++.+ +.+|.  .++++++|++|++++|.+.+. +|..++++                +.|++.++.+...
T Consensus        11 ~~L~~L~l~~n~l-~~iP~--~i~~L~~L~~L~l~~n~~~~~-~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~l   86 (454)
T 1jl5_A           11 TFLQEPLRHSSNL-TEMPV--EAENVKSKTEYYNAWSEWERN-APPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSL   86 (454)
T ss_dssp             --------------------------CCHHHHHHHHHHHHHT-SCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCC
T ss_pred             ccchhhhcccCch-hhCCh--hHhcccchhhhhccCCccccc-CCcccccchhcchhhhhhhhccCCCEEEecCCccccC
Confidence            4666777777766 45555  667777777777766665543 55544433                2233333333321


Q ss_pred             hhcCCCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhh--h-------hhcccCCCccccCCCCccEEEC
Q 048333          107 FEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFF--L-------IQISGRIPSSLGNLSKLLHLDL  177 (413)
Q Consensus       107 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~--~-------~~~~~~~~~~l~~~~~L~~L~l  177 (413)
                      -...++|++|++++|.+.+ +|..   +++|++|++++|.++.++...  .       -++ ..+| .+.++++|++|++
T Consensus        87 p~~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l-~~lp-~~~~l~~L~~L~l  160 (454)
T 1jl5_A           87 PELPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQL-EKLP-ELQNSSFLKIIDV  160 (454)
T ss_dssp             CSCCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCC-SSCC-CCTTCTTCCEEEC
T ss_pred             CCCcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcccCCCCCCCEEECcCCCC-CCCc-ccCCCCCCCEEEC
Confidence            1123455555555555543 3322   234444444444433221100  0       001 1244 3666777777777


Q ss_pred             CCCccccccccccccccccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEE
Q 048333          178 SLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLN  257 (413)
Q Consensus       178 ~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~  257 (413)
                      ++|.+++.          |..   ..+|++|++++|.+.. +| .+..+++|+.|++++|.+.+ +|..   .++|++|+
T Consensus       161 ~~N~l~~l----------p~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~  221 (454)
T 1jl5_A          161 DNNSLKKL----------PDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIV  221 (454)
T ss_dssp             CSSCCSCC----------CCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEE
T ss_pred             CCCcCccc----------CCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEE
Confidence            77766642          111   1244555555554432 33 24444555555555444432 2211   12444444


Q ss_pred             ecCCccccccchhhccCCCCCeEecCCcccC
Q 048333          258 LRSCGFWSKVPHSIGNFTRLQFLFLGFNNFS  288 (413)
Q Consensus       258 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  288 (413)
                      +++|.+. .+|. +..+++|++|++++|.+.
T Consensus       222 l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~  250 (454)
T 1jl5_A          222 AGNNILE-ELPE-LQNLPFLTTIYADNNLLK  250 (454)
T ss_dssp             CCSSCCS-SCCC-CTTCTTCCEEECCSSCCS
T ss_pred             CcCCcCC-cccc-cCCCCCCCEEECCCCcCC
Confidence            4444442 2332 444444444444444443

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.95  E-value=1.9e-26  Score=219.93  Aligned_cols=311  Identities=23%  Similarity=0.227  Sum_probs=151.0

Q ss_pred             eEEEecCCCccccccCCccccccccccceeeccccCCCCCCCCccccCcCccccCCcchhhhhhcCCCCcEEEcCCccCC
Q 048333           45 VIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENLFEKLSNLKTLNLGDVSID  124 (413)
Q Consensus        45 l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~L~~L~l~~~~~~  124 (413)
                      +++|+++++.+.+ ++.     -.++|++|++++|.+.+  ++..+.+|+.|++..+.+...-...++|++|++++|.+.
T Consensus        73 l~~L~l~~~~l~~-lp~-----~~~~L~~L~l~~n~l~~--lp~~~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~  144 (454)
T 1jl5_A           73 AHELELNNLGLSS-LPE-----LPPHLESLVASCNSLTE--LPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLE  144 (454)
T ss_dssp             CSEEECTTSCCSC-CCS-----CCTTCSEEECCSSCCSS--CCCCCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCS
T ss_pred             CCEEEecCCcccc-CCC-----CcCCCCEEEccCCcCCc--cccccCCCcEEECCCCccCcccCCCCCCCEEECcCCCCC
Confidence            4556666655543 111     12456666666665554  444455566666555544432112246666666666665


Q ss_pred             CCcCccccCCCCCcEEEccCCcccccchhh---------hhhcccCCCccccCCCCccEEECCCCccccccccccccccc
Q 048333          125 STIPHNIKNLSSLTFVSLRNCELQAMCSFF---------LIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGEL  195 (413)
Q Consensus       125 ~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~---------~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~  195 (413)
                      + +| .+..+++|++|++++|.++.++...         .-.+ ..+| .+.++++|+.|++++|.+++.          
T Consensus       145 ~-lp-~~~~l~~L~~L~l~~N~l~~lp~~~~~L~~L~L~~n~l-~~l~-~~~~l~~L~~L~l~~N~l~~l----------  210 (454)
T 1jl5_A          145 K-LP-ELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQL-EELP-ELQNLPFLTAIYADNNSLKKL----------  210 (454)
T ss_dssp             S-CC-CCTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCC-SSCC-CCTTCTTCCEEECCSSCCSSC----------
T ss_pred             C-Cc-ccCCCCCCCEEECCCCcCcccCCCcccccEEECcCCcC-CcCc-cccCCCCCCEEECCCCcCCcC----------
Confidence            3 44 3566666666666666654221000         0000 0122 244444444444444444321          


Q ss_pred             cccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccCC
Q 048333          196 PISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFT  275 (413)
Q Consensus       196 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~  275 (413)
                      |..   .++|++|++++|.+. .+|. +..+++|++|++++|.+.. +|.   .+++|+.|++++|.+.+ ++..   ++
T Consensus       211 ~~~---~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~-l~~~---~~  277 (454)
T 1jl5_A          211 PDL---PLSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTD-LPEL---PQ  277 (454)
T ss_dssp             CCC---CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSC-CCCC---CT
T ss_pred             CCC---cCcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCcccc-cCcc---cC
Confidence            111   124555555555444 3332 4455555555555555442 222   12455555555555422 2221   24


Q ss_pred             CCCeEecCCcccCCcccccccCCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcceechhHhhhcccCCCeee
Q 048333          276 RLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALD  355 (413)
Q Consensus       276 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~  355 (413)
                      +|+.|++++|.+.+ .+.   ..++|+.|++++|.+++ ++.   ..++|+.|++++|.+.+ ++ .    .+++|++|+
T Consensus       278 ~L~~L~ls~N~l~~-l~~---~~~~L~~L~l~~N~l~~-i~~---~~~~L~~L~Ls~N~l~~-lp-~----~~~~L~~L~  343 (454)
T 1jl5_A          278 SLTFLDVSENIFSG-LSE---LPPNLYYLNASSNEIRS-LCD---LPPSLEELNVSNNKLIE-LP-A----LPPRLERLI  343 (454)
T ss_dssp             TCCEEECCSSCCSE-ESC---CCTTCCEEECCSSCCSE-ECC---CCTTCCEEECCSSCCSC-CC-C----CCTTCCEEE
T ss_pred             cCCEEECcCCccCc-ccC---cCCcCCEEECcCCcCCc-ccC---CcCcCCEEECCCCcccc-cc-c----cCCcCCEEE
Confidence            55566665555543 110   12456666666666552 111   12477788888877764 33 1    257788888


Q ss_pred             ccCccccccceeeeccccccccccceeeeccCCCCCC---cchHhhcC-------------CCCcEEeCCCCCC
Q 048333          356 ISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLTK---FPNFLENQ-------------NHLVILNLSDNRI  413 (413)
Q Consensus       356 l~~~~i~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~---l~~~~~~l-------------~~L~~L~l~~n~i  413 (413)
                      +++|.++.++.         .+++|++|++++|.++.   +|..+..+             ++|+.|++++|++
T Consensus       344 L~~N~l~~lp~---------~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l  408 (454)
T 1jl5_A          344 ASFNHLAEVPE---------LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPL  408 (454)
T ss_dssp             CCSSCCSCCCC---------CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC----------------------
T ss_pred             CCCCccccccc---------hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcC
Confidence            88887665443         24678888888888874   56666666             7888888888864

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.95  E-value=6.9e-26  Score=216.27  Aligned_cols=281  Identities=18%  Similarity=0.170  Sum_probs=225.4

Q ss_pred             ccccccccceeeccccCCCCCCCCccccCcCccccCCcchhhhhhcCCCCcEEEcCCccCCCCcCccccCCCCCcEEEcc
Q 048333           64 SLFKLVHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENLFEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLR  143 (413)
Q Consensus        64 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  143 (413)
                      .+..+++|++|++++|.+.+.  +                  .+..+++|++|++++|.+++ +|  +..+++|++|+++
T Consensus        37 ~~~~l~~L~~L~Ls~n~l~~~--~------------------~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls   93 (457)
T 3bz5_A           37 SEEQLATLTSLDCHNSSITDM--T------------------GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACD   93 (457)
T ss_dssp             EHHHHTTCCEEECCSSCCCCC--T------------------TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECC
T ss_pred             ChhHcCCCCEEEccCCCcccC--h------------------hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECc
Confidence            678899999999999988753  2                  26679999999999999986 34  8899999999999


Q ss_pred             CCcccccchhhhhhcccCCCccccCCCCccEEECCCCccccccccccccccccccccCCCCccEEeCCCCcCCCcchhhh
Q 048333          144 NCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSI  223 (413)
Q Consensus       144 ~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l  223 (413)
                      +|.++.            ++  ++++++|++|++++|.+++          ++  +..+++|++|++++|.+.. +  .+
T Consensus        94 ~N~l~~------------~~--~~~l~~L~~L~L~~N~l~~----------l~--~~~l~~L~~L~l~~N~l~~-l--~l  144 (457)
T 3bz5_A           94 SNKLTN------------LD--VTPLTKLTYLNCDTNKLTK----------LD--VSQNPLLTYLNCARNTLTE-I--DV  144 (457)
T ss_dssp             SSCCSC------------CC--CTTCTTCCEEECCSSCCSC----------CC--CTTCTTCCEEECTTSCCSC-C--CC
T ss_pred             CCCCce------------ee--cCCCCcCCEEECCCCcCCe----------ec--CCCCCcCCEEECCCCccce-e--cc
Confidence            999873            33  7889999999999999884          33  7789999999999999975 3  27


Q ss_pred             hCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccCCCCCeEecCCcccCCcccccccCCCCCcE
Q 048333          224 RNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEV  303 (413)
Q Consensus       224 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~  303 (413)
                      ..+++|++|++++|...+.+  .+..+++|+.|++++|.+.+ .+  +..+++|+.|++++|.+.+.   .+..+++|+.
T Consensus       145 ~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~  216 (457)
T 3bz5_A          145 SHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTF  216 (457)
T ss_dssp             TTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSE
T ss_pred             ccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCE
Confidence            88999999999999654344  47788999999999999855 44  78899999999999999854   4788999999


Q ss_pred             EEccCCcccccccccccCCCCCCEEECCCCcCcceechhHhhhcccCCCeeeccCccccccce----eeecccccccccc
Q 048333          304 IYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTK----ATFDATTDTTSQK  379 (413)
Q Consensus       304 L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~----~~~~~~~~~~~~~  379 (413)
                      |++++|++++ +|  +..+++|+.|++++|.+.+..     ...+++|+.|+++++.++.++-    ..+..+ ...+++
T Consensus       217 L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~-----~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~-~~~l~~  287 (457)
T 3bz5_A          217 LDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD-----VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ-AEGCRK  287 (457)
T ss_dssp             EECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC-----CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE-CTTCTT
T ss_pred             EECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC-----HHHCCCCCEEeccCCCCCEEECCCCccCCccc-cccccc
Confidence            9999999986 44  788999999999999998643     3456677777666666655432    122222 126789


Q ss_pred             ceeeeccCCCCC-Ccch--------HhhcCCCCcEEeCCCCCC
Q 048333          380 IQYRGLRSCNLT-KFPN--------FLENQNHLVILNLSDNRI  413 (413)
Q Consensus       380 L~~L~l~~~~l~-~l~~--------~~~~l~~L~~L~l~~n~i  413 (413)
                      |+.|++++|... .+|.        .+.++++|+.|++++|+|
T Consensus       288 L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l  330 (457)
T 3bz5_A          288 IKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTEL  330 (457)
T ss_dssp             CCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCC
T ss_pred             CCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcc
Confidence            999999999743 3332        256788999999999975

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=4.2e-26  Score=207.02  Aligned_cols=254  Identities=23%  Similarity=0.279  Sum_probs=195.3

Q ss_pred             cccceeeccccCCCCCCCCccccCcCccccCCcchhhhhhcCCCCcEEEcCCccCCCC--cCccccCCCCCcEEEccCCc
Q 048333           69 VHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENLFEKLSNLKTLNLGDVSIDST--IPHNIKNLSSLTFVSLRNCE  146 (413)
Q Consensus        69 ~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~  146 (413)
                      ++|++|++++|.+..  ++.                ..+..+++|++|++++|.+...  .+..+..+++|++|++++|.
T Consensus        28 ~~l~~L~L~~n~l~~--i~~----------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~   89 (306)
T 2z66_A           28 SSATRLELESNKLQS--LPH----------------GVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG   89 (306)
T ss_dssp             TTCCEEECCSSCCCC--CCT----------------TTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS
T ss_pred             CCCCEEECCCCccCc--cCH----------------hHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc
Confidence            678899999887764  332                2356788999999998887632  25566678899999999988


Q ss_pred             ccccchhhhhhcccCCCccccCCCCccEEECCCCccccccccccccccccccccCCCCccEEeCCCCcCCCcchhhhhCC
Q 048333          147 LQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNL  226 (413)
Q Consensus       147 l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~  226 (413)
                      +.            .++..+..+++|++|++++|.++...        ....+..+++|+.|++++|.+....+..+..+
T Consensus        90 i~------------~l~~~~~~l~~L~~L~l~~n~l~~~~--------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l  149 (306)
T 2z66_A           90 VI------------TMSSNFLGLEQLEHLDFQHSNLKQMS--------EFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL  149 (306)
T ss_dssp             EE------------EEEEEEETCTTCCEEECTTSEEESST--------TTTTTTTCTTCCEEECTTSCCEECSTTTTTTC
T ss_pred             cc------------cChhhcCCCCCCCEEECCCCcccccc--------cchhhhhccCCCEEECCCCcCCccchhhcccC
Confidence            76            34556778889999999998887541        11357788889999999988876677778888


Q ss_pred             CCCCEEEccCCcCcc-cCCcccCCCCCCcEEEecCCccccccchhhccCCCCCeEecCCcccCCcccccccCCCCCcEEE
Q 048333          227 FSLEKLDLSFNKLSG-EFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIY  305 (413)
Q Consensus       227 ~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~  305 (413)
                      ++|++|++++|.+.. ..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|+
T Consensus       150 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  229 (306)
T 2z66_A          150 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLD  229 (306)
T ss_dssp             TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEE
T ss_pred             cCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeE
Confidence            999999999988865 4677788889999999999988776677888889999999999988866666778889999999


Q ss_pred             ccCCcccccccccccCCC-CCCEEECCCCcCcceechhHhhhcccCCCeeeccCcc
Q 048333          306 IAKCNFSGQITSSLRNLT-QLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNR  360 (413)
Q Consensus       306 L~~~~~~~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~  360 (413)
                      +++|.+++..+..+..++ +|++|++++|.+...........-+...+.+.+..+.
T Consensus       230 L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~  285 (306)
T 2z66_A          230 YSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVER  285 (306)
T ss_dssp             CTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGG
T ss_pred             CCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccc
Confidence            999999877777777774 8999999999887654433233334445555555554

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.95  E-value=2.5e-29  Score=241.60  Aligned_cols=357  Identities=20%  Similarity=0.171  Sum_probs=252.7

Q ss_pred             CCceEEEecCCCcccccc--CCccccccccccceeeccccCCCCCC---CCcccc----CcCccccCCcch--------h
Q 048333           42 TGHVIKLNLSHGCLFGSI--NSSSSLFKLVHLKWLNLALNDFNSSE---IPPEII----NLSRLELQKPSF--------E  104 (413)
Q Consensus        42 ~~~l~~L~l~~~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~---~~~~~~----~L~~L~l~~~~i--------~  104 (413)
                      .+++++|++++|.+....  ..+..+..+++|++|++++|.+....   +...+.    +|+.|++.++.+        +
T Consensus        27 ~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~  106 (461)
T 1z7x_W           27 LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLS  106 (461)
T ss_dssp             HTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred             cCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHH
Confidence            468999999999886431  11126777899999999999875421   122333    688888886544        4


Q ss_pred             hhhhcCCCCcEEEcCCccCCCCcCcccc-----CCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCC
Q 048333          105 NLFEKLSNLKTLNLGDVSIDSTIPHNIK-----NLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSL  179 (413)
Q Consensus       105 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~  179 (413)
                      ..+..+++|++|++++|.+.+..+..+.     ..++|++|++++|.++....       ..++..+..+++|++|++++
T Consensus       107 ~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~-------~~l~~~l~~~~~L~~L~L~~  179 (461)
T 1z7x_W          107 STLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASC-------EPLASVLRAKPDFKELTVSN  179 (461)
T ss_dssp             HHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH-------HHHHHHHHHCTTCCEEECCS
T ss_pred             HHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHH-------HHHHHHHhhCCCCCEEECcC
Confidence            5578899999999999998653333222     35689999999999874211       12345567789999999999


Q ss_pred             Ccccccccccccccccccccc-CCCCccEEeCCCCcCCCc----chhhhhCCCCCCEEEccCCcCcccC-----CcccCC
Q 048333          180 NELQGEAASFRCFGELPISMG-NLGSLKELDLSQNGFFGE----LPTSIRNLFSLEKLDLSFNKLSGEF-----PWSTGN  249 (413)
Q Consensus       180 ~~i~~~~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~-----~~~l~~  249 (413)
                      |.+++....     .+...+. ..++|++|++++|.+...    ++..+..+++|++|++++|.+....     +.....
T Consensus       180 n~i~~~~~~-----~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~  254 (461)
T 1z7x_W          180 NDINEAGVR-----VLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHP  254 (461)
T ss_dssp             SBCHHHHHH-----HHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTST
T ss_pred             CCcchHHHH-----HHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcC
Confidence            998764221     1111221 356899999999998753    5677888999999999999876432     223346


Q ss_pred             CCCCcEEEecCCccccc----cchhhccCCCCCeEecCCcccCCcccccccC-----CCCCcEEEccCCccccc----cc
Q 048333          250 FSSLKLLNLRSCGFWSK----VPHSIGNFTRLQFLFLGFNNFSGDLLGSIGN-----LRSLEVIYIAKCNFSGQ----IT  316 (413)
Q Consensus       250 ~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~-----~~~L~~L~L~~~~~~~~----~~  316 (413)
                      +++|++|++++|.+.+.    ++..+..+++|++|++++|.+.+..+..+..     .++|+.|++++|.+++.    ++
T Consensus       255 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~  334 (461)
T 1z7x_W          255 SSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFS  334 (461)
T ss_dssp             TCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred             CCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHH
Confidence            78999999999988553    5666778999999999999887544433332     37999999999999854    45


Q ss_pred             ccccCCCCCCEEECCCCcCcceechh--Hhhh-cccCCCeeeccCccccccceeeecccccc-ccccceeeeccCCCCCC
Q 048333          317 SSLRNLTQLVVLDMAQNSYGGTVELD--VLLT-SWKNLEALDISLNRSSVLTKATFDATTDT-TSQKIQYRGLRSCNLTK  392 (413)
Q Consensus       317 ~~~~~~~~L~~L~l~~n~~~~~~~~~--~~~~-~~~~L~~L~l~~~~i~~l~~~~~~~~~~~-~~~~L~~L~l~~~~l~~  392 (413)
                      ..+..+++|++|++++|.+.+.....  ..+. ..++|++|++++|.++..+  ....+..+ .+++|++|++++|.++.
T Consensus       335 ~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~--~~~l~~~l~~~~~L~~L~l~~N~i~~  412 (461)
T 1z7x_W          335 SVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSS--CSSLAATLLANHSLRELDLSNNCLGD  412 (461)
T ss_dssp             HHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHH--HHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred             HHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhh--HHHHHHHHHhCCCccEEECCCCCCCH
Confidence            66777899999999999887543311  1122 2679999999999965311  11233333 67899999999999982


Q ss_pred             --c---chHhh-cCCCCcEEeCCCCC
Q 048333          393 --F---PNFLE-NQNHLVILNLSDNR  412 (413)
Q Consensus       393 --l---~~~~~-~l~~L~~L~l~~n~  412 (413)
                        +   ...+. ...+|+.|++.++.
T Consensus       413 ~~~~~l~~~l~~~~~~L~~L~~~~~~  438 (461)
T 1z7x_W          413 AGILQLVESVRQPGCLLEQLVLYDIY  438 (461)
T ss_dssp             HHHHHHHHHHTSTTCCCCEEECTTCC
T ss_pred             HHHHHHHHHhccCCcchhheeecccc
Confidence              2   22222 23468888887765

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.94  E-value=2.8e-26  Score=208.21  Aligned_cols=267  Identities=21%  Similarity=0.182  Sum_probs=207.6

Q ss_pred             CCCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCccccccccc
Q 048333          110 LSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASF  189 (413)
Q Consensus       110 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~  189 (413)
                      .++|++|++++|.+....+..+.++++|++|++++|.+...         +..+..+..+++|++|++++|.+..     
T Consensus        27 ~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~---------~~~~~~~~~~~~L~~L~Ls~n~i~~-----   92 (306)
T 2z66_A           27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFK---------GCCSQSDFGTTSLKYLDLSFNGVIT-----   92 (306)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEE---------EEEEHHHHSCSCCCEEECCSCSEEE-----
T ss_pred             CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcc---------cCcccccccccccCEEECCCCcccc-----
Confidence            46899999999999865555678999999999999988643         1224556678999999999999873     


Q ss_pred             cccccccccccCCCCccEEeCCCCcCCCcch-hhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCcccc-cc
Q 048333          190 RCFGELPISMGNLGSLKELDLSQNGFFGELP-TSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWS-KV  267 (413)
Q Consensus       190 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~  267 (413)
                           +|..+..+++|++|++++|.+....+ ..+..+++|++|++++|.+....+..+..+++|++|++++|.+.+ ..
T Consensus        93 -----l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  167 (306)
T 2z66_A           93 -----MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL  167 (306)
T ss_dssp             -----EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEE
T ss_pred             -----ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccc
Confidence                 56668889999999999999875443 578889999999999999887778888899999999999998865 57


Q ss_pred             chhhccCCCCCeEecCCcccCCcccccccCCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcceechhHhhhc
Q 048333          268 PHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTS  347 (413)
Q Consensus       268 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~  347 (413)
                      +..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.+..+ . .+..
T Consensus       168 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~-~~~~  245 (306)
T 2z66_A          168 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK-Q-ELQH  245 (306)
T ss_dssp             CSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSS-S-SCCC
T ss_pred             hhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCH-H-HHHh
Confidence            7788999999999999999987667788889999999999999987666678889999999999999986555 3 4566


Q ss_pred             cc-CCCeeeccCccccccceeeeccccccccccceeeeccCCCCC-CcchHhhcC
Q 048333          348 WK-NLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLT-KFPNFLENQ  400 (413)
Q Consensus       348 ~~-~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~-~l~~~~~~l  400 (413)
                      ++ +|++|++++|++....... ....  .....+.+.+..+.+. ..|..+.+.
T Consensus       246 ~~~~L~~L~L~~N~~~~~c~~~-~~~~--~l~~~~~~~~~~~~~~C~~p~~~~g~  297 (306)
T 2z66_A          246 FPSSLAFLNLTQNDFACTCEHQ-SFLQ--WIKDQRQLLVEVERMECATPSDKQGM  297 (306)
T ss_dssp             CCTTCCEEECTTCCEECSGGGH-HHHH--HHHHTGGGBSCGGGCBEEESGGGTTC
T ss_pred             hhccCCEEEccCCCeecccChH-HHHH--HHHhhhhhhccccccccCCchhhCCc
Confidence            64 8999999999953211100 0011  1223444455555555 556655543

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.94  E-value=2.1e-25  Score=222.68  Aligned_cols=318  Identities=26%  Similarity=0.276  Sum_probs=222.2

Q ss_pred             cccceeeccccCCCCCCCC---ccccCcCccccCCcch----hhhhhcCCCCcEEEcCCccCCCCcCccccCCCCCcEEE
Q 048333           69 VHLKWLNLALNDFNSSEIP---PEIINLSRLELQKPSF----ENLFEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVS  141 (413)
Q Consensus        69 ~~L~~L~l~~~~~~~~~~~---~~~~~L~~L~l~~~~i----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  141 (413)
                      +++++||+++|.++.. .+   ..+.+|+.|++..+.+    +++|.++++|++|++++|++....+..|.++++|++|+
T Consensus        52 ~~~~~LdLs~N~i~~l-~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~  130 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV  130 (635)
T ss_dssp             TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEE
T ss_pred             cCCCEEEeeCCCCCCC-CHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEE
Confidence            4799999999998764 22   3456777788887665    34588999999999999999876667899999999999


Q ss_pred             ccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCccccccccccccccccccccCCCCccEEeCCCCcCCCcchh
Q 048333          142 LRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPT  221 (413)
Q Consensus       142 l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~  221 (413)
                      +++|.++.           ..+..++++++|++|++++|.++..        ..|..+..+++|++|++++|.+....+.
T Consensus       131 Ls~N~l~~-----------l~~~~~~~L~~L~~L~Ls~N~l~~~--------~~~~~~~~l~~L~~L~L~~N~l~~~~~~  191 (635)
T 4g8a_A          131 AVETNLAS-----------LENFPIGHLKTLKELNVAHNLIQSF--------KLPEYFSNLTNLEHLDLSSNKIQSIYCT  191 (635)
T ss_dssp             CTTSCCCC-----------STTCCCTTCTTCCEEECCSSCCCCC--------CCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred             CCCCcCCC-----------CChhhhhcCcccCeeccccCccccC--------CCchhhccchhhhhhcccCccccccccc
Confidence            99999873           3345688999999999999998754        3566777888888888888876533332


Q ss_pred             hhhCC---------------------------------------------------------------------------
Q 048333          222 SIRNL---------------------------------------------------------------------------  226 (413)
Q Consensus       222 ~l~~~---------------------------------------------------------------------------  226 (413)
                      .+..+                                                                           
T Consensus       192 ~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~  271 (635)
T 4g8a_A          192 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFD  271 (635)
T ss_dssp             GGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCC
T ss_pred             cccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccccccccccccc
Confidence            22111                                                                           


Q ss_pred             --------------------------------------------------------CCCCEEEccCCcCcccCC------
Q 048333          227 --------------------------------------------------------FSLEKLDLSFNKLSGEFP------  244 (413)
Q Consensus       227 --------------------------------------------------------~~L~~L~l~~~~~~~~~~------  244 (413)
                                                                              ..++.|++.++.+.....      
T Consensus       272 ~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L  351 (635)
T 4g8a_A          272 KSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSL  351 (635)
T ss_dssp             TTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTC
T ss_pred             ccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhh
Confidence                                                                    112222222222110000      


Q ss_pred             -------------cccCCCCCCcEEEecCCcccc--ccchhhcc-----------------------CCCCCeEecCCcc
Q 048333          245 -------------WSTGNFSSLKLLNLRSCGFWS--KVPHSIGN-----------------------FTRLQFLFLGFNN  286 (413)
Q Consensus       245 -------------~~l~~~~~L~~L~l~~~~~~~--~~~~~~~~-----------------------~~~L~~L~l~~~~  286 (413)
                                   .....+++|+.++++++.+..  ..+..+..                       +++|+.+++..+.
T Consensus       352 ~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~  431 (635)
T 4g8a_A          352 KRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN  431 (635)
T ss_dssp             CEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSE
T ss_pred             hhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcc
Confidence                         011124567777777765522  22233333                       3445555555444


Q ss_pred             cCC-cccccccCCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcceechhHhhhcccCCCeeeccCccccccc
Q 048333          287 FSG-DLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLT  365 (413)
Q Consensus       287 ~~~-~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~  365 (413)
                      ... .....+..+++++.++++.|.+....+..+..++.++.|++++|.+....... .+..+++|++|++++|.++.+.
T Consensus       432 ~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~-~~~~l~~L~~L~Ls~N~L~~l~  510 (635)
T 4g8a_A          432 LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD-IFTELRNLTFLDLSQCQLEQLS  510 (635)
T ss_dssp             EESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECS-CCTTCTTCCEEECTTSCCCEEC
T ss_pred             ccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCch-hhhhccccCEEECCCCccCCcC
Confidence            332 12234556778888888888887777778888999999999999765433313 6788999999999999965543


Q ss_pred             eeeecccccc-ccccceeeeccCCCCCCcc-hHhhcCCCCcEEeCCCCCC
Q 048333          366 KATFDATTDT-TSQKIQYRGLRSCNLTKFP-NFLENQNHLVILNLSDNRI  413 (413)
Q Consensus       366 ~~~~~~~~~~-~~~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~l~~n~i  413 (413)
                            +..+ .+++|++|++++|+++.++ ..+.++++|+.|++++|+|
T Consensus       511 ------~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l  554 (635)
T 4g8a_A          511 ------PTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI  554 (635)
T ss_dssp             ------TTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCC
T ss_pred             ------hHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcC
Confidence                  2333 6789999999999999664 6789999999999999986

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=6.5e-26  Score=203.59  Aligned_cols=268  Identities=19%  Similarity=0.179  Sum_probs=155.7

Q ss_pred             cEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCccccccccccccc
Q 048333          114 KTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFG  193 (413)
Q Consensus       114 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~  193 (413)
                      ++++.+++.++ .+|..+  .++|++|+++++.++.           ..+..+..+++|++|++++|.+++.        
T Consensus        14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~-----------~~~~~~~~~~~L~~L~l~~n~l~~~--------   71 (285)
T 1ozn_A           14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISH-----------VPAASFRACRNLTILWLHSNVLARI--------   71 (285)
T ss_dssp             CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCE-----------ECTTTTTTCTTCCEEECCSSCCCEE--------
T ss_pred             eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCc-----------cCHHHcccCCCCCEEECCCCcccee--------
Confidence            45555555554 233322  3556666666666552           2234455666666666666665533        


Q ss_pred             cccccccCCCCccEEeCCCCc-CCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhc
Q 048333          194 ELPISMGNLGSLKELDLSQNG-FFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIG  272 (413)
Q Consensus       194 ~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~  272 (413)
                       .+..+..+++|++|++++|. +....+..+..+++|++|++++|.+....+..+..+++|++|++++|.+....+..+.
T Consensus        72 -~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  150 (285)
T 1ozn_A           72 -DAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFR  150 (285)
T ss_dssp             -CTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred             -CHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhc
Confidence             23455566666666666665 4433455566666666666666666655555566666677777766666544444566


Q ss_pred             cCCCCCeEecCCcccCCcccccccCCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcceechhHhhhcccCCC
Q 048333          273 NFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLE  352 (413)
Q Consensus       273 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~  352 (413)
                      .+++|++|++++|.+....+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.+..+ . .+..+++|+
T Consensus       151 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~-~~~~l~~L~  228 (285)
T 1ozn_A          151 DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPT-E-ALAPLRALQ  228 (285)
T ss_dssp             TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCH-H-HHTTCTTCC
T ss_pred             cCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCH-H-HcccCcccC
Confidence            66677777777776664444456666777777777777765556666677777777777777664332 2 466677777


Q ss_pred             eeeccCccccccceeeeccccccccccceeeeccCCCCC-CcchHhhc--CCCCcEEeCCCCC
Q 048333          353 ALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLT-KFPNFLEN--QNHLVILNLSDNR  412 (413)
Q Consensus       353 ~L~l~~~~i~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~-~l~~~~~~--l~~L~~L~l~~n~  412 (413)
                      +|++++|++      ..+.........++.+....+.+. ..|..+.+  +..++..++.||+
T Consensus       229 ~L~l~~N~~------~c~~~~~~~~~~l~~~~~~~~~~~c~~p~~l~g~~l~~l~~~~l~~C~  285 (285)
T 1ozn_A          229 YLRLNDNPW------VCDCRARPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQGCA  285 (285)
T ss_dssp             EEECCSSCE------ECSGGGHHHHHHHHHCCSEECCCBEEESGGGTTCBGGGSCGGGSCCC-
T ss_pred             EEeccCCCc------cCCCCcHHHHHHHHhcccccCccccCCchHhCCcChhhcCHHHhccCC
Confidence            777777763      222211111223444455555555 55555533  4555556666664

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=1.4e-25  Score=201.41  Aligned_cols=250  Identities=21%  Similarity=0.197  Sum_probs=202.3

Q ss_pred             CCCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCc-ccccccc
Q 048333          110 LSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNE-LQGEAAS  188 (413)
Q Consensus       110 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-i~~~~~~  188 (413)
                      .++|++|++++|.+.+..+..+..+++|++|++++|.++           +..+..+.++++|++|++++|. +...   
T Consensus        31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~-----------~~~~~~~~~l~~L~~L~l~~n~~l~~~---   96 (285)
T 1ozn_A           31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-----------RIDAAAFTGLALLEQLDLSDNAQLRSV---   96 (285)
T ss_dssp             CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-----------EECTTTTTTCTTCCEEECCSCTTCCCC---
T ss_pred             CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccc-----------eeCHhhcCCccCCCEEeCCCCCCcccc---
Confidence            578999999999998766678899999999999999887           3446778899999999999997 6643   


Q ss_pred             ccccccccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccc
Q 048333          189 FRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVP  268 (413)
Q Consensus       189 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~  268 (413)
                            .+..+..+++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|++++|.+.+..+
T Consensus        97 ------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  170 (285)
T 1ozn_A           97 ------DPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE  170 (285)
T ss_dssp             ------CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred             ------CHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH
Confidence                  35678889999999999999987778889999999999999999986666678889999999999999866666


Q ss_pred             hhhccCCCCCeEecCCcccCCcccccccCCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcceechhHhhhcc
Q 048333          269 HSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSW  348 (413)
Q Consensus       269 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~  348 (413)
                      ..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+..........   
T Consensus       171 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~---  247 (285)
T 1ozn_A          171 RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLW---  247 (285)
T ss_dssp             TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHH---
T ss_pred             HHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHH---
Confidence            67889999999999999998777888999999999999999998766677899999999999999987655433122   


Q ss_pred             cCCCeeeccCccccccceeeecccccc---ccccceeeeccCC
Q 048333          349 KNLEALDISLNRSSVLTKATFDATTDT---TSQKIQYRGLRSC  388 (413)
Q Consensus       349 ~~L~~L~l~~~~i~~l~~~~~~~~~~~---~~~~L~~L~l~~~  388 (413)
                      ..++.+....+.      .....|..+   .+..++..++.+|
T Consensus       248 ~~l~~~~~~~~~------~~c~~p~~l~g~~l~~l~~~~l~~C  284 (285)
T 1ozn_A          248 AWLQKFRGSSSE------VPCSLPQRLAGRDLKRLAANDLQGC  284 (285)
T ss_dssp             HHHHHCCSEECC------CBEEESGGGTTCBGGGSCGGGSCCC
T ss_pred             HHHHhcccccCc------cccCCchHhCCcChhhcCHHHhccC
Confidence            224444555555      344444433   4555666666666

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.94  E-value=1.8e-26  Score=213.83  Aligned_cols=283  Identities=19%  Similarity=0.184  Sum_probs=207.5

Q ss_pred             CCCCCCCCCCCCcccceEEeeCCCCceEEEecCCCccccccCCccccccccccceeeccccCCCCCCCCccccCcCcccc
Q 048333           19 ASWKPEEGSVDCYSWDVVHCNKNTGHVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPPEIINLSRLEL   98 (413)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l   98 (413)
                      +.|..   ....|.|.++ |.          .+++.++ .+|.  .+  .++|++|++++|.+...  +           
T Consensus        21 ~~~~~---~~~~C~~~~~-c~----------~~~~~l~-~iP~--~~--~~~L~~L~l~~n~i~~~--~-----------   68 (353)
T 2z80_A           21 ESSNQ---ASLSCDRNGI-CK----------GSSGSLN-SIPS--GL--TEAVKSLDLSNNRITYI--S-----------   68 (353)
T ss_dssp             ---------CCEECTTSE-EE----------CCSTTCS-SCCT--TC--CTTCCEEECTTSCCCEE--C-----------
T ss_pred             cCCCc---cCCCCCCCeE-ee----------CCCCCcc-cccc--cc--cccCcEEECCCCcCccc--C-----------
Confidence            44554   6778888876 53          3444443 2332  23  25899999999987643  1           


Q ss_pred             CCcchhhhhhcCCCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCc-cccCCCCccEEEC
Q 048333           99 QKPSFENLFEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPS-SLGNLSKLLHLDL  177 (413)
Q Consensus        99 ~~~~i~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~-~l~~~~~L~~L~l  177 (413)
                           +..+..+++|++|++++|.+.+..+..+.++++|++|++++|.++.            ++. .+.++++|++|++
T Consensus        69 -----~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~------------~~~~~~~~l~~L~~L~L  131 (353)
T 2z80_A           69 -----NSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSN------------LSSSWFKPLSSLTFLNL  131 (353)
T ss_dssp             -----TTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSS------------CCHHHHTTCTTCSEEEC
T ss_pred             -----HHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCc------------CCHhHhCCCccCCEEEC
Confidence                 1246678999999999999987777789999999999999998873            333 3788999999999


Q ss_pred             CCCccccccccccccccccc--cccCCCCccEEeCCCCc-CCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCc
Q 048333          178 SLNELQGEAASFRCFGELPI--SMGNLGSLKELDLSQNG-FFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLK  254 (413)
Q Consensus       178 ~~~~i~~~~~~~~~~~~~~~--~~~~l~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~  254 (413)
                      ++|.++..          |.  .+..+++|++|++++|. +....+..+..+++|++|++++|.+....+..+..+++|+
T Consensus       132 ~~n~l~~l----------~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~  201 (353)
T 2z80_A          132 LGNPYKTL----------GETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVS  201 (353)
T ss_dssp             TTCCCSSS----------CSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEE
T ss_pred             CCCCCccc----------CchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCC
Confidence            99988743          33  67888999999999984 5544566788899999999999988877788888899999


Q ss_pred             EEEecCCccccccchhhccCCCCCeEecCCcccCCcccccc---cCCCCCcEEEccCCcccc----cccccccCCCCCCE
Q 048333          255 LLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSI---GNLRSLEVIYIAKCNFSG----QITSSLRNLTQLVV  327 (413)
Q Consensus       255 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l---~~~~~L~~L~L~~~~~~~----~~~~~~~~~~~L~~  327 (413)
                      +|++++|.+.......+..+++|+.|++++|.+.+..+..+   ...+.++.+++.++.+.+    .+|..+..+++|+.
T Consensus       202 ~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~  281 (353)
T 2z80_A          202 HLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLE  281 (353)
T ss_dssp             EEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCE
T ss_pred             eecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCE
Confidence            99999998744333445568899999999998876443333   235678888888887764    35666778888888


Q ss_pred             EECCCCcCcceechhHhhhcccCCCeeeccCcccc
Q 048333          328 LDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSS  362 (413)
Q Consensus       328 L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~i~  362 (413)
                      |++++|.+. .++ ...+..+++|++|++++|++.
T Consensus       282 L~Ls~N~l~-~i~-~~~~~~l~~L~~L~L~~N~~~  314 (353)
T 2z80_A          282 LEFSRNQLK-SVP-DGIFDRLTSLQKIWLHTNPWD  314 (353)
T ss_dssp             EECCSSCCC-CCC-TTTTTTCTTCCEEECCSSCBC
T ss_pred             EECCCCCCC-ccC-HHHHhcCCCCCEEEeeCCCcc
Confidence            888888887 344 224678888888888888843

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.94  E-value=4.5e-26  Score=211.08  Aligned_cols=279  Identities=15%  Similarity=0.086  Sum_probs=141.4

Q ss_pred             CCCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCccccccccc
Q 048333          110 LSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASF  189 (413)
Q Consensus       110 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~  189 (413)
                      |+.....+.+++.++ .+|..+.  ++|++|++++|.++.           ..+..+.++++|++|++++|.+++.    
T Consensus        30 C~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~-----------~~~~~~~~l~~L~~L~L~~n~l~~~----   91 (353)
T 2z80_A           30 CDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITY-----------ISNSDLQRCVNLQALVLTSNGINTI----   91 (353)
T ss_dssp             ECTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCE-----------ECTTTTTTCTTCCEEECTTSCCCEE----
T ss_pred             CCCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcc-----------cCHHHhccCCCCCEEECCCCccCcc----
Confidence            344444555555554 3343332  356666666665542           1223455556666666666655532    


Q ss_pred             cccccccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCC-cccCCCCCCcEEEecCCc-ccccc
Q 048333          190 RCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFP-WSTGNFSSLKLLNLRSCG-FWSKV  267 (413)
Q Consensus       190 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~-~~~~~  267 (413)
                           .+..+..+++|++|++++|.+....+..+..+++|++|++++|.+..... ..+..+++|++|++++|. +....
T Consensus        92 -----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~  166 (353)
T 2z80_A           92 -----EEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQ  166 (353)
T ss_dssp             -----CTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC
T ss_pred             -----CHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccC
Confidence                 23345555666666666666554333345556666666666665553222 245555666666666653 33333


Q ss_pred             chhhccCCCCCeEecCCcccCCcccccccCCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcceechh-Hhhh
Q 048333          268 PHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELD-VLLT  346 (413)
Q Consensus       268 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~-~~~~  346 (413)
                      +..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.++......+..+++|+.|++++|.+.+..... ....
T Consensus       167 ~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~  246 (353)
T 2z80_A          167 RKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGE  246 (353)
T ss_dssp             TTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------
T ss_pred             HHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccccccccc
Confidence            445555666666666666655444555555666666666666654222223334566666666666555322100 0122


Q ss_pred             cccCCCeeeccCccccccceeeecccccc-ccccceeeeccCCCCCCcchHh-hcCCCCcEEeCCCCCC
Q 048333          347 SWKNLEALDISLNRSSVLTKATFDATTDT-TSQKIQYRGLRSCNLTKFPNFL-ENQNHLVILNLSDNRI  413 (413)
Q Consensus       347 ~~~~L~~L~l~~~~i~~l~~~~~~~~~~~-~~~~L~~L~l~~~~l~~l~~~~-~~l~~L~~L~l~~n~i  413 (413)
                      ..+.++.++++++.+....  ....+..+ .+++|++|++++|+++.+|..+ .++++|+.|++++|++
T Consensus       247 ~~~~l~~l~L~~~~l~~~~--l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~  313 (353)
T 2z80_A          247 TNSLIKKFTFRNVKITDES--LFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPW  313 (353)
T ss_dssp             CCCCCCEEEEESCBCCHHH--HHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             ccchhhccccccccccCcc--hhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCc
Confidence            3444555555555532211  11112222 4556666666666666665543 5666666666666653

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.94  E-value=1.3e-25  Score=205.41  Aligned_cols=228  Identities=21%  Similarity=0.299  Sum_probs=182.4

Q ss_pred             cCCCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCcccccccc
Q 048333          109 KLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAAS  188 (413)
Q Consensus       109 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~  188 (413)
                      ..+++++|++++|.+. .+|..+.++++|++|++++|.+.            .+|..+.++++|++|++++|.++     
T Consensus        79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~------------~lp~~~~~l~~L~~L~Ls~n~l~-----  140 (328)
T 4fcg_A           79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM------------ELPDTMQQFAGLETLTLARNPLR-----  140 (328)
T ss_dssp             TSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC------------CCCSCGGGGTTCSEEEEESCCCC-----
T ss_pred             cccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc------------chhHHHhccCCCCEEECCCCccc-----
Confidence            3588999999999987 67777888999999999999876            56778888999999999999887     


Q ss_pred             ccccccccccccCCCCccEEeCCCCcCCCcchhhhhC---------CCCCCEEEccCCcCcccCCcccCCCCCCcEEEec
Q 048333          189 FRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRN---------LFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLR  259 (413)
Q Consensus       189 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~---------~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~  259 (413)
                           .+|..+..+++|++|++++|.....+|..+..         +++|++|++++|.+. .+|..+..+++|++|+++
T Consensus       141 -----~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~  214 (328)
T 4fcg_A          141 -----ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIR  214 (328)
T ss_dssp             -----CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEE
T ss_pred             -----cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEcc
Confidence                 26778889999999999998777677766544         788888888888776 667777788888888888


Q ss_pred             CCccccccchhhccCCCCCeEecCCcccCCcccccccCCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCccee
Q 048333          260 SCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTV  339 (413)
Q Consensus       260 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~  339 (413)
                      +|.+. ..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+
T Consensus       215 ~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~i  293 (328)
T 4fcg_A          215 NSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRL  293 (328)
T ss_dssp             SSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCC
T ss_pred             CCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhc
Confidence            88774 45556778888888888888777777777777888888888888777777777778888888888888777766


Q ss_pred             chhHhhhcccCCCeeeccCccccc
Q 048333          340 ELDVLLTSWKNLEALDISLNRSSV  363 (413)
Q Consensus       340 ~~~~~~~~~~~L~~L~l~~~~i~~  363 (413)
                      + . .+..+++|+.+++..+.+..
T Consensus       294 P-~-~l~~L~~L~~l~l~~~~~~~  315 (328)
T 4fcg_A          294 P-S-LIAQLPANCIILVPPHLQAQ  315 (328)
T ss_dssp             C-G-GGGGSCTTCEEECCGGGSCC
T ss_pred             c-H-HHhhccCceEEeCCHHHHHH
Confidence            6 4 67778888888887766433

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.92  E-value=9.3e-24  Score=201.35  Aligned_cols=248  Identities=18%  Similarity=0.205  Sum_probs=172.7

Q ss_pred             CCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCccccccccccc
Q 048333          112 NLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRC  191 (413)
Q Consensus       112 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~  191 (413)
                      ....++.++..++ .+|..+  .++++.|++++|.+..           ..+..+.++++|+.|++++|.++..      
T Consensus        44 ~~~~v~c~~~~l~-~iP~~~--~~~l~~L~L~~n~i~~-----------~~~~~~~~l~~L~~L~Ls~n~i~~i------  103 (440)
T 3zyj_A           44 QFSKVICVRKNLR-EVPDGI--STNTRLLNLHENQIQI-----------IKVNSFKHLRHLEILQLSRNHIRTI------  103 (440)
T ss_dssp             TSCEEECCSCCCS-SCCSCC--CTTCSEEECCSCCCCE-----------ECTTTTSSCSSCCEEECCSSCCCEE------
T ss_pred             CCCEEEeCCCCcC-cCCCCC--CCCCcEEEccCCcCCe-----------eCHHHhhCCCCCCEEECCCCcCCcc------
Confidence            4566777776665 455544  2678888888888763           3346677788888888888877754      


Q ss_pred             cccccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCcccccc-chh
Q 048333          192 FGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKV-PHS  270 (413)
Q Consensus       192 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~  270 (413)
                         .+..+.++++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|+++++...... +..
T Consensus       104 ---~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~  180 (440)
T 3zyj_A          104 ---EIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGA  180 (440)
T ss_dssp             ---CGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTT
T ss_pred             ---ChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcch
Confidence               2355777788888888888877555556777888888888888777555666777888888888775433333 345


Q ss_pred             hccCCCCCeEecCCcccCCcccccccCCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcceechhHhhhcccC
Q 048333          271 IGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKN  350 (413)
Q Consensus       271 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~  350 (413)
                      |..+++|++|++++|.+.. .+ .+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.+..+ . .+..+++
T Consensus       181 ~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~-~~~~l~~  256 (440)
T 3zyj_A          181 FEGLSNLRYLNLAMCNLRE-IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIER-N-AFDNLQS  256 (440)
T ss_dssp             TTTCSSCCEEECTTSCCSS-CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECT-T-SSTTCTT
T ss_pred             hhcccccCeecCCCCcCcc-cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEECh-h-hhcCCCC
Confidence            7777888888888887763 22 46677788888888887776667777777888888888887765443 3 5667777


Q ss_pred             CCeeeccCccccccceeeeccccccccccceeeeccCCCCC
Q 048333          351 LEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLT  391 (413)
Q Consensus       351 L~~L~l~~~~i~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~  391 (413)
                      |++|++++|.++.++...+.     .+++|+.|++++|.+.
T Consensus       257 L~~L~L~~N~l~~~~~~~~~-----~l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          257 LVEINLAHNNLTLLPHDLFT-----PLHHLERIHLHHNPWN  292 (440)
T ss_dssp             CCEEECTTSCCCCCCTTTTS-----SCTTCCEEECCSSCEE
T ss_pred             CCEEECCCCCCCccChhHhc-----cccCCCEEEcCCCCcc
Confidence            88888888776544322211     4567777777777664

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.92  E-value=7.9e-24  Score=202.54  Aligned_cols=226  Identities=25%  Similarity=0.255  Sum_probs=101.0

Q ss_pred             CCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCcccccccccc
Q 048333          111 SNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFR  190 (413)
Q Consensus       111 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~  190 (413)
                      +++++|++++|.+.+..+..|.++++|++|++++|.+..           ..+..+.++++|++|++++|.++..     
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~-----------~~~~~~~~l~~L~~L~L~~n~l~~~-----  138 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQ-----------IEVGAFNGLASLNTLELFDNWLTVI-----  138 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE-----------ECTTTTTTCTTCCEEECCSSCCSBC-----
T ss_pred             CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCC-----------cChhhccCcccCCEEECCCCcCCcc-----
Confidence            344455555554444444444445555555555544441           2233444444555555555544422     


Q ss_pred             ccccccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCc-CcccCCcccCCCCCCcEEEecCCccccccch
Q 048333          191 CFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNK-LSGEFPWSTGNFSSLKLLNLRSCGFWSKVPH  269 (413)
Q Consensus       191 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~  269 (413)
                          .+..+..+++|++|++++|.+....+..+..+++|+.|+++++. +....+..+..+++|+.|++++|.+.+ .+ 
T Consensus       139 ----~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-  212 (452)
T 3zyi_A          139 ----PSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-  212 (452)
T ss_dssp             ----CTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC-
T ss_pred             ----ChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-cc-
Confidence                11224444455555555554443333344444555555554422 221222234444455555555544422 22 


Q ss_pred             hhccCCCCCeEecCCcccCCcccccccCCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcceechhHhhhccc
Q 048333          270 SIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWK  349 (413)
Q Consensus       270 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~  349 (413)
                      .+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.+... . .+..++
T Consensus       213 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~-~~~~l~  290 (452)
T 3zyi_A          213 NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPH-D-LFTPLR  290 (452)
T ss_dssp             CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCT-T-SSTTCT
T ss_pred             cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccCh-H-Hhcccc
Confidence            24444455555555554444444444445555555555555444444444445555555555554442222 1 334444


Q ss_pred             CCCeeeccCcc
Q 048333          350 NLEALDISLNR  360 (413)
Q Consensus       350 ~L~~L~l~~~~  360 (413)
                      +|+.|++++|+
T Consensus       291 ~L~~L~L~~Np  301 (452)
T 3zyi_A          291 YLVELHLHHNP  301 (452)
T ss_dssp             TCCEEECCSSC
T ss_pred             CCCEEEccCCC
Confidence            55555555544

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.92  E-value=8.3e-24  Score=201.68  Aligned_cols=208  Identities=23%  Similarity=0.252  Sum_probs=119.0

Q ss_pred             hhcCCCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCcccccc
Q 048333          107 FEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEA  186 (413)
Q Consensus       107 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~  186 (413)
                      +..+++|++|++++|.+....+..|.++++|++|++++|.++.           ..+..+..+++|++|++++|.++.. 
T Consensus        84 ~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~-----------~~~~~~~~l~~L~~L~L~~N~i~~~-  151 (440)
T 3zyj_A           84 FKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTT-----------IPNGAFVYLSKLKELWLRNNPIESI-  151 (440)
T ss_dssp             TSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSS-----------CCTTTSCSCSSCCEEECCSCCCCEE-
T ss_pred             hhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCe-----------eCHhHhhccccCceeeCCCCccccc-
Confidence            5556666666666666655444556666666666666666552           2223455566666666666665532 


Q ss_pred             ccccccccccccccCCCCccEEeCCCCcCCCcch-hhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCcccc
Q 048333          187 ASFRCFGELPISMGNLGSLKELDLSQNGFFGELP-TSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWS  265 (413)
Q Consensus       187 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~  265 (413)
                              .+..+..+++|++|+++++.....++ ..+..+++|+.|++++|.+. .+| .+..+++|+.|++++|.+.+
T Consensus       152 --------~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~  221 (440)
T 3zyj_A          152 --------PSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSA  221 (440)
T ss_dssp             --------CTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCE
T ss_pred             --------CHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCc
Confidence                    12345556666666666543322332 34556666666666666555 233 24555666666666666655


Q ss_pred             ccchhhccCCCCCeEecCCcccCCcccccccCCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCc
Q 048333          266 KVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYG  336 (413)
Q Consensus       266 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~  336 (413)
                      ..+..|..+++|+.|++++|.+....+..+..+++|+.|++++|++++..+..+..+++|+.|++++|.+.
T Consensus       222 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          222 IRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN  292 (440)
T ss_dssp             ECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred             cChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence            55555666666666666666665555555556666666666666665444455555666666666666554

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.92  E-value=9.9e-24  Score=201.86  Aligned_cols=248  Identities=18%  Similarity=0.183  Sum_probs=195.1

Q ss_pred             CCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCccccccccccc
Q 048333          112 NLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRC  191 (413)
Q Consensus       112 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~  191 (413)
                      ....++.++..++ .+|..+  .+++++|++++|.++.           ..+..+.++++|+.|++++|.++..      
T Consensus        55 ~~~~v~c~~~~l~-~iP~~~--~~~l~~L~L~~n~i~~-----------~~~~~~~~l~~L~~L~Ls~n~i~~~------  114 (452)
T 3zyi_A           55 QFSKVVCTRRGLS-EVPQGI--PSNTRYLNLMENNIQM-----------IQADTFRHLHHLEVLQLGRNSIRQI------  114 (452)
T ss_dssp             SSCEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCE-----------ECTTTTTTCTTCCEEECCSSCCCEE------
T ss_pred             CCcEEEECCCCcC-ccCCCC--CCCccEEECcCCcCce-----------ECHHHcCCCCCCCEEECCCCccCCc------
Confidence            4567888887776 466544  3689999999998873           4567788999999999999988854      


Q ss_pred             cccccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCcccccc-chh
Q 048333          192 FGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKV-PHS  270 (413)
Q Consensus       192 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~  270 (413)
                         .+..+.++++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|...+.+ +..
T Consensus       115 ---~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~  191 (452)
T 3zyi_A          115 ---EVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGA  191 (452)
T ss_dssp             ---CTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTT
T ss_pred             ---ChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhh
Confidence               3466888999999999999988666667888999999999999888666667888999999999886543444 345


Q ss_pred             hccCCCCCeEecCCcccCCcccccccCCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcceechhHhhhcccC
Q 048333          271 IGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKN  350 (413)
Q Consensus       271 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~  350 (413)
                      +..+++|++|++++|.+.+.  ..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.+..+ . .+.++++
T Consensus       192 ~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~-~~~~l~~  267 (452)
T 3zyi_A          192 FEGLFNLKYLNLGMCNIKDM--PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIER-N-AFDGLAS  267 (452)
T ss_dssp             TTTCTTCCEEECTTSCCSSC--CCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECT-T-TTTTCTT
T ss_pred             ccCCCCCCEEECCCCccccc--ccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECH-H-HhcCCCC
Confidence            78889999999999988743  357778899999999999887778888889999999999998875544 3 6778888


Q ss_pred             CCeeeccCccccccceeeeccccccccccceeeeccCCCCC
Q 048333          351 LEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLT  391 (413)
Q Consensus       351 L~~L~l~~~~i~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~  391 (413)
                      |++|++++|.++.++...+.     .+++|++|++++|.+.
T Consensus       268 L~~L~L~~N~l~~~~~~~~~-----~l~~L~~L~L~~Np~~  303 (452)
T 3zyi_A          268 LVELNLAHNNLSSLPHDLFT-----PLRYLVELHLHHNPWN  303 (452)
T ss_dssp             CCEEECCSSCCSCCCTTSST-----TCTTCCEEECCSSCEE
T ss_pred             CCEEECCCCcCCccChHHhc-----cccCCCEEEccCCCcC
Confidence            99999999886654432221     4678888888888765

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.92  E-value=4.4e-23  Score=202.80  Aligned_cols=257  Identities=21%  Similarity=0.193  Sum_probs=179.4

Q ss_pred             cccceeeccccCCCCCCCCccccCcCccccCCcchhhhhhcCCCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCccc
Q 048333           69 VHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENLFEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQ  148 (413)
Q Consensus        69 ~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~  148 (413)
                      .+++.|+++++.+..  +|..+                   .++|++|++++|.++ .+|.   .+++|++|++++|.++
T Consensus        40 ~~l~~L~ls~n~L~~--lp~~l-------------------~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~   94 (622)
T 3g06_A           40 NGNAVLNVGESGLTT--LPDCL-------------------PAHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT   94 (622)
T ss_dssp             HCCCEEECCSSCCSC--CCSCC-------------------CTTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS
T ss_pred             CCCcEEEecCCCcCc--cChhh-------------------CCCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC
Confidence            357888888887763  44321                   267888888888776 3444   4677888888888775


Q ss_pred             ccchhhhhhcccCCCccccCCCCccEEECCCCccccccccccccccccccccCCCCccEEeCCCCcCCCcchhhhhCCCC
Q 048333          149 AMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFS  228 (413)
Q Consensus       149 ~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~  228 (413)
                                  .+|.   .+++|++|++++|.++.          +|.   .+++|+.|++++|.+.. +|..   +++
T Consensus        95 ------------~lp~---~l~~L~~L~Ls~N~l~~----------l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~  142 (622)
T 3g06_A           95 ------------SLPV---LPPGLLELSIFSNPLTH----------LPA---LPSGLCKLWIFGNQLTS-LPVL---PPG  142 (622)
T ss_dssp             ------------CCCC---CCTTCCEEEECSCCCCC----------CCC---CCTTCCEEECCSSCCSC-CCCC---CTT
T ss_pred             ------------cCCC---CCCCCCEEECcCCcCCC----------CCC---CCCCcCEEECCCCCCCc-CCCC---CCC
Confidence                        2343   56778888888887764          233   45678888888887753 4442   377


Q ss_pred             CCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccCCCCCeEecCCcccCCcccccccCCCCCcEEEccC
Q 048333          229 LEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAK  308 (413)
Q Consensus       229 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~  308 (413)
                      |++|++++|.+.. ++.   .+++|+.|++++|.+.. ++   ..+++|+.|++++|.+.. ++.   .+++|+.|++++
T Consensus       143 L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~  210 (622)
T 3g06_A          143 LQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYN  210 (622)
T ss_dssp             CCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCS
T ss_pred             CCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcC
Confidence            8888888887763 332   34678888888887743 44   446778888888887764 222   247888888888


Q ss_pred             CcccccccccccCCCCCCEEECCCCcCcceechhHhhhcccCCCeeeccCccccccceeeeccccccccccceeeeccCC
Q 048333          309 CNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSC  388 (413)
Q Consensus       309 ~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~L~~L~l~~~  388 (413)
                      |.++ .++.   .+++|+.|++++|.+.+ ++     ..+++|++|++++|.++.++.         .+++|+.|++++|
T Consensus       211 N~l~-~l~~---~~~~L~~L~Ls~N~L~~-lp-----~~l~~L~~L~Ls~N~L~~lp~---------~~~~L~~L~Ls~N  271 (622)
T 3g06_A          211 NRLT-SLPA---LPSGLKELIVSGNRLTS-LP-----VLPSELKELMVSGNRLTSLPM---------LPSGLLSLSVYRN  271 (622)
T ss_dssp             SCCS-SCCC---CCTTCCEEECCSSCCSC-CC-----CCCTTCCEEECCSSCCSCCCC---------CCTTCCEEECCSS
T ss_pred             Cccc-ccCC---CCCCCCEEEccCCccCc-CC-----CCCCcCcEEECCCCCCCcCCc---------ccccCcEEeCCCC
Confidence            8876 3443   24778888888888774 22     356788888888888765543         3467888888888


Q ss_pred             CCCCcchHhhcCCCCcEEeCCCCCC
Q 048333          389 NLTKFPNFLENQNHLVILNLSDNRI  413 (413)
Q Consensus       389 ~l~~l~~~~~~l~~L~~L~l~~n~i  413 (413)
                      .++.+|..+.++++|+.|++++|+|
T Consensus       272 ~L~~lp~~l~~l~~L~~L~L~~N~l  296 (622)
T 3g06_A          272 QLTRLPESLIHLSSETTVNLEGNPL  296 (622)
T ss_dssp             CCCSCCGGGGGSCTTCEEECCSCCC
T ss_pred             CCCcCCHHHhhccccCEEEecCCCC
Confidence            8888888888888888888888875

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.92  E-value=1.9e-26  Score=209.67  Aligned_cols=251  Identities=18%  Similarity=0.167  Sum_probs=157.0

Q ss_pred             hhcCCCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCcccc-------CCCCccEEECCC
Q 048333          107 FEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLG-------NLSKLLHLDLSL  179 (413)
Q Consensus       107 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~-------~~~~L~~L~l~~  179 (413)
                      ++..++|++|++++|.+  .+|..+...  |++|+++++.+..          ..++..+.       ++++|++|++++
T Consensus        39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~----------~~~~~~~~~~~~~~~~l~~L~~L~L~~  104 (312)
T 1wwl_A           39 YGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRA----------ARIPSRILFGALRVLGISGLQELTLEN  104 (312)
T ss_dssp             EEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEE----------EECBHHHHHHHHHHHTTSCCCEEEEEE
T ss_pred             EccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccC----------CCcCHHHHHHHHHhcCcCCccEEEccC
Confidence            55677888899988888  566655443  8888888888753          13344333       678888888888


Q ss_pred             Cccccccccccccccccccc--cCCCCccEEeCCCCcCCCcchhhhhCC-----CCCCEEEccCCcCcccCCcccCCCCC
Q 048333          180 NELQGEAASFRCFGELPISM--GNLGSLKELDLSQNGFFGELPTSIRNL-----FSLEKLDLSFNKLSGEFPWSTGNFSS  252 (413)
Q Consensus       180 ~~i~~~~~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~~~l~~~-----~~L~~L~l~~~~~~~~~~~~l~~~~~  252 (413)
                      |.+++.         .|..+  ..+++|++|++++|.+... |..+..+     ++|++|++++|.+....+..+..+++
T Consensus       105 n~l~~~---------~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~  174 (312)
T 1wwl_A          105 LEVTGT---------APPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPA  174 (312)
T ss_dssp             EBCBSC---------CCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSS
T ss_pred             Ccccch---------hHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCC
Confidence            888754         44444  6778888888888887654 5555554     66777777776666555555666666


Q ss_pred             CcEEEecCCccccc--cchhhccCCCCCeEecCCcccCCcccccccCCCCCcEEEccCCcccc---cccccccCCCCCCE
Q 048333          253 LKLLNLRSCGFWSK--VPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSG---QITSSLRNLTQLVV  327 (413)
Q Consensus       253 L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~---~~~~~~~~~~~L~~  327 (413)
                      |++|++++|.+.+.  .+..+                      .+..+++|+.|++++|.+++   .....+..+++|++
T Consensus       175 L~~L~Ls~N~l~~~~~~~~~~----------------------~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~  232 (312)
T 1wwl_A          175 LSTLDLSDNPELGERGLISAL----------------------CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQG  232 (312)
T ss_dssp             CCEEECCSCTTCHHHHHHHHS----------------------CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSE
T ss_pred             CCEEECCCCCcCcchHHHHHH----------------------HhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCE
Confidence            66666666654332  11111                      11344555555555555541   11123345566666


Q ss_pred             EECCCCcCcceechhHhhhcccCCCeeeccCccccccceeeeccccccccccceeeeccCCCCCCcchHhhcCCCCcEEe
Q 048333          328 LDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLTKFPNFLENQNHLVILN  407 (413)
Q Consensus       328 L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~  407 (413)
                      |++++|.+.+..+.. .+..+++|++|++++|.++.++...       . ++|++|++++|+++.+|. +..+++|+.|+
T Consensus       233 L~Ls~N~l~~~~~~~-~~~~l~~L~~L~Ls~N~l~~ip~~~-------~-~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~  302 (312)
T 1wwl_A          233 LDLSHNSLRDAAGAP-SCDWPSQLNSLNLSFTGLKQVPKGL-------P-AKLSVLDLSYNRLDRNPS-PDELPQVGNLS  302 (312)
T ss_dssp             EECTTSCCCSSCCCS-CCCCCTTCCEEECTTSCCSSCCSSC-------C-SEEEEEECCSSCCCSCCC-TTTSCEEEEEE
T ss_pred             EECCCCcCCcccchh-hhhhcCCCCEEECCCCccChhhhhc-------c-CCceEEECCCCCCCCChh-HhhCCCCCEEe
Confidence            666666666544212 3445667777777777755443221       2 567788888888777666 77778888888


Q ss_pred             CCCCCC
Q 048333          408 LSDNRI  413 (413)
Q Consensus       408 l~~n~i  413 (413)
                      +++|+|
T Consensus       303 L~~N~l  308 (312)
T 1wwl_A          303 LKGNPF  308 (312)
T ss_dssp             CTTCTT
T ss_pred             ccCCCC
Confidence            888765

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.92  E-value=6.8e-26  Score=206.07  Aligned_cols=154  Identities=23%  Similarity=0.198  Sum_probs=87.8

Q ss_pred             CCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCccc--CCccc--CCCCCCcEEEecCCcccc--cc-chhhccCC
Q 048333          203 GSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGE--FPWST--GNFSSLKLLNLRSCGFWS--KV-PHSIGNFT  275 (413)
Q Consensus       203 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--~~~~l--~~~~~L~~L~l~~~~~~~--~~-~~~~~~~~  275 (413)
                      ++|++|++++|.+....+..+..+++|++|++++|.+.+.  .+..+  ..+++|++|++++|.+.+  .. ...+..++
T Consensus       149 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~  228 (312)
T 1wwl_A          149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARV  228 (312)
T ss_dssp             TTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTC
T ss_pred             CCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCC
Confidence            3444444444444433334444444455555544443221  11112  455666666666665531  11 12334567


Q ss_pred             CCCeEecCCcccCCccc-ccccCCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcceechhHhhhcccCCCee
Q 048333          276 RLQFLFLGFNNFSGDLL-GSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEAL  354 (413)
Q Consensus       276 ~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L  354 (413)
                      +|++|++++|.+.+..+ ..+..+++|+.|++++|.++ .+|..+.  ++|++|++++|.+.+. +   .+..+++|++|
T Consensus       229 ~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p---~~~~l~~L~~L  301 (312)
T 1wwl_A          229 QLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-P---SPDELPQVGNL  301 (312)
T ss_dssp             CCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-C---CTTTSCEEEEE
T ss_pred             CCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-h---hHhhCCCCCEE
Confidence            77777777777765432 34445677777777777776 5555444  7778888888877654 3   25677778888


Q ss_pred             eccCccccc
Q 048333          355 DISLNRSSV  363 (413)
Q Consensus       355 ~l~~~~i~~  363 (413)
                      ++++|+++.
T Consensus       302 ~L~~N~l~~  310 (312)
T 1wwl_A          302 SLKGNPFLD  310 (312)
T ss_dssp             ECTTCTTTC
T ss_pred             eccCCCCCC
Confidence            888877544

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.92  E-value=9.4e-25  Score=198.97  Aligned_cols=263  Identities=16%  Similarity=0.106  Sum_probs=202.4

Q ss_pred             CceEEEecCCCccccccCCccccccccccceeeccccCCCCCCCCccccCcCccccCCcchhhhhhcCCCCcEEEcCCcc
Q 048333           43 GHVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENLFEKLSNLKTLNLGDVS  122 (413)
Q Consensus        43 ~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~L~~L~l~~~~  122 (413)
                      .+++..+++.+.+......  .+..+++|++|++++|.+...                  .+..+..+++|++|++++|.
T Consensus        10 ~~l~i~~ls~~~l~~~~~~--~~~~~~~L~~L~L~~n~l~~~------------------~~~~~~~l~~L~~L~Ls~n~   69 (317)
T 3o53_A           10 NRYKIEKVTDSSLKQALAS--LRQSAWNVKELDLSGNPLSQI------------------SAADLAPFTKLELLNLSSNV   69 (317)
T ss_dssp             TEEEEESCCTTTHHHHHHH--HHTTGGGCSEEECTTSCCCCC------------------CHHHHTTCTTCCEEECTTSC
T ss_pred             CceeEeeccccchhhhHHH--HhccCCCCCEEECcCCccCcC------------------CHHHhhCCCcCCEEECCCCc
Confidence            3566677777766544433  456678999999999988753                  13467789999999999999


Q ss_pred             CCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCccccccccccccccccccccCC
Q 048333          123 IDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNL  202 (413)
Q Consensus       123 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~l  202 (413)
                      +.+..+  +..+++|++|++++|.++.+                ...++|+.|++++|.++...            ...+
T Consensus        70 l~~~~~--~~~l~~L~~L~Ls~n~l~~l----------------~~~~~L~~L~l~~n~l~~~~------------~~~~  119 (317)
T 3o53_A           70 LYETLD--LESLSTLRTLDLNNNYVQEL----------------LVGPSIETLHAANNNISRVS------------CSRG  119 (317)
T ss_dssp             CEEEEE--ETTCTTCCEEECCSSEEEEE----------------EECTTCCEEECCSSCCSEEE------------ECCC
T ss_pred             CCcchh--hhhcCCCCEEECcCCccccc----------------cCCCCcCEEECCCCccCCcC------------cccc
Confidence            875443  88899999999999987642                23379999999999987542            2235


Q ss_pred             CCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCccc-CCCCCCcEEEecCCccccccchhhccCCCCCeEe
Q 048333          203 GSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWST-GNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLF  281 (413)
Q Consensus       203 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  281 (413)
                      ++|++|++++|.+....+..+..+++|++|++++|.+....+..+ ..+++|++|++++|.+.+. +. ...+++|++|+
T Consensus       120 ~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~  197 (317)
T 3o53_A          120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLD  197 (317)
T ss_dssp             SSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEE
T ss_pred             CCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEE
Confidence            789999999999986666678888999999999998876555555 4678999999999988544 32 33588999999


Q ss_pred             cCCcccCCcccccccCCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcceechhHhhhcccCCCeeeccCcc
Q 048333          282 LGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNR  360 (413)
Q Consensus       282 l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~  360 (413)
                      +++|.+.. .+..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|.+..... ...+..++.|+.|+++++.
T Consensus       198 Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~-~~~~~~~~~L~~l~l~~~~  273 (317)
T 3o53_A          198 LSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTL-RDFFSKNQRVQTVAKQTVK  273 (317)
T ss_dssp             CCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHH-HHHHHTCHHHHHHHHHHHH
T ss_pred             CCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCH-HHHHhccccceEEECCCch
Confidence            99998884 4445778899999999999987 567778888999999999999873322 2377888889999888654

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.91  E-value=2.6e-26  Score=227.57  Aligned_cols=213  Identities=15%  Similarity=0.090  Sum_probs=123.8

Q ss_pred             ccccccCCCCccEEeCCCCcCCCcch-hhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecC----------C-c
Q 048333          195 LPISMGNLGSLKELDLSQNGFFGELP-TSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRS----------C-G  262 (413)
Q Consensus       195 ~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~----------~-~  262 (413)
                      +|..+..+++|++|++++|.+..... ..+..+++|+.|+++++.....++.....+++|++|++++          | .
T Consensus       285 l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~  364 (592)
T 3ogk_B          285 MPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGL  364 (592)
T ss_dssp             GGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCC
T ss_pred             HHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCc
Confidence            34444555666666666666432222 3345666666666662221112222234456677777763          2 3


Q ss_pred             cccc-cchhhccCCCCCeEecCCcccCCcccccccC-CCCCcEEEcc----CCccccc-----ccccccCCCCCCEEECC
Q 048333          263 FWSK-VPHSIGNFTRLQFLFLGFNNFSGDLLGSIGN-LRSLEVIYIA----KCNFSGQ-----ITSSLRNLTQLVVLDMA  331 (413)
Q Consensus       263 ~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~-~~~L~~L~L~----~~~~~~~-----~~~~~~~~~~L~~L~l~  331 (413)
                      +.+. .......+++|++|+++.+.+++..+..+.. +++|+.|++.    .+.+++.     ++..+..+++|++|+++
T Consensus       365 ~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~  444 (592)
T 3ogk_B          365 VSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFY  444 (592)
T ss_dssp             CCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEE
T ss_pred             cCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEe
Confidence            3222 2222345677777777666666544444544 6777877775    3444432     23335567888888886


Q ss_pred             CCc--CcceechhHhhhcccCCCeeeccCccccccceeeecccccc-ccccceeeeccCCCCC--CcchHhhcCCCCcEE
Q 048333          332 QNS--YGGTVELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDT-TSQKIQYRGLRSCNLT--KFPNFLENQNHLVIL  406 (413)
Q Consensus       332 ~n~--~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~-~~~~L~~L~l~~~~l~--~l~~~~~~l~~L~~L  406 (413)
                      .|.  +++... ......+++|++|++++|.++..     ..+... .+++|++|++++|.++  .++..+..+++|+.|
T Consensus       445 ~~~~~l~~~~~-~~~~~~~~~L~~L~L~~n~l~~~-----~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  518 (592)
T 3ogk_B          445 LRQGGLTDLGL-SYIGQYSPNVRWMLLGYVGESDE-----GLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYL  518 (592)
T ss_dssp             CCGGGCCHHHH-HHHHHSCTTCCEEEECSCCSSHH-----HHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEE
T ss_pred             cCCCCccHHHH-HHHHHhCccceEeeccCCCCCHH-----HHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCee
Confidence            543  443322 32344578888888888874321     111111 5678999999999887  356666788999999


Q ss_pred             eCCCCCC
Q 048333          407 NLSDNRI  413 (413)
Q Consensus       407 ~l~~n~i  413 (413)
                      ++++|++
T Consensus       519 ~ls~n~i  525 (592)
T 3ogk_B          519 WVQGYRA  525 (592)
T ss_dssp             EEESCBC
T ss_pred             ECcCCcC
Confidence            9998874

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.91  E-value=2e-24  Score=196.83  Aligned_cols=243  Identities=17%  Similarity=0.134  Sum_probs=185.8

Q ss_pred             hhhhcCCCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCcccc
Q 048333          105 NLFEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQG  184 (413)
Q Consensus       105 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~  184 (413)
                      ..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+...           . . +..+++|++|++++|.+++
T Consensus        28 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-----------~-~-~~~l~~L~~L~Ls~n~l~~   94 (317)
T 3o53_A           28 SLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYET-----------L-D-LESLSTLRTLDLNNNYVQE   94 (317)
T ss_dssp             HHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEE-----------E-E-ETTCTTCCEEECCSSEEEE
T ss_pred             HHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcc-----------h-h-hhhcCCCCEEECcCCcccc
Confidence            3455678999999999999887778899999999999999998732           2 2 7889999999999999874


Q ss_pred             ccccccccccccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccc
Q 048333          185 EAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFW  264 (413)
Q Consensus       185 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  264 (413)
                      .          +    ..++|++|++++|.+....+.   .+++|+.|++++|.+....+..+..+++|++|++++|.+.
T Consensus        95 l----------~----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  157 (317)
T 3o53_A           95 L----------L----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID  157 (317)
T ss_dssp             E----------E----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCC
T ss_pred             c----------c----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCC
Confidence            3          2    237899999999988754433   3678999999999888666667778889999999999886


Q ss_pred             cccchhh-ccCCCCCeEecCCcccCCcccccccCCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcceechhH
Q 048333          265 SKVPHSI-GNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDV  343 (413)
Q Consensus       265 ~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~  343 (413)
                      +..+..+ ..+++|++|++++|.+.+.  .....+++|+.|++++|.+++ ++..+..+++|+.|++++|.+.+ ++ . 
T Consensus       158 ~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~~-l~-~-  231 (317)
T 3o53_A          158 TVNFAELAASSDTLEHLNLQYNFIYDV--KGQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IE-K-  231 (317)
T ss_dssp             EEEGGGGGGGTTTCCEEECTTSCCCEE--ECCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-EC-T-
T ss_pred             cccHHHHhhccCcCCEEECCCCcCccc--ccccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCcccc-hh-h-
Confidence            6655555 4678899999999988743  233457889999999998874 44457788899999999998874 33 2 


Q ss_pred             hhhcccCCCeeeccCccccccceeeecccccc-ccccceeeeccCC
Q 048333          344 LLTSWKNLEALDISLNRSSVLTKATFDATTDT-TSQKIQYRGLRSC  388 (413)
Q Consensus       344 ~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~-~~~~L~~L~l~~~  388 (413)
                      .+..+++|+.|++++|++..     ...+... .+++|+.+++.++
T Consensus       232 ~~~~l~~L~~L~l~~N~~~~-----~~~~~~~~~~~~L~~l~l~~~  272 (317)
T 3o53_A          232 ALRFSQNLEHFDLRGNGFHC-----GTLRDFFSKNQRVQTVAKQTV  272 (317)
T ss_dssp             TCCCCTTCCEEECTTCCCBH-----HHHHHHHHTCHHHHHHHHHHH
T ss_pred             HhhcCCCCCEEEccCCCccC-----cCHHHHHhccccceEEECCCc
Confidence            56778889999999988531     1222222 5666777776633

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.91  E-value=3.6e-23  Score=203.40  Aligned_cols=281  Identities=19%  Similarity=0.161  Sum_probs=181.4

Q ss_pred             CCCCCCCCCCCCCCcccceEEe------eCCCCceEEEecCCCccccccCCccccccccccceeeccccCCCCCCCCccc
Q 048333           17 TMASWKPEEGSVDCYSWDVVHC------NKNTGHVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPPEI   90 (413)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~   90 (413)
                      ..++|..   ..++|.|.+..+      .-...+++.|+++++.+. .++.  .+.  ++|++|++++|.+..  ++..+
T Consensus        11 ~w~~W~~---~~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n~L~-~lp~--~l~--~~L~~L~L~~N~l~~--lp~~l   80 (622)
T 3g06_A           11 VWSAWRR---AAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLT-TLPD--CLP--AHITTLVIPDNNLTS--LPALP   80 (622)
T ss_dssp             HHHHHHH---TCCGGGHHHHHHHHHHHHHHHHHCCCEEECCSSCCS-CCCS--CCC--TTCSEEEECSCCCSC--CCCCC
T ss_pred             HHHHHHh---cCCcchhccccccCcccccccCCCCcEEEecCCCcC-ccCh--hhC--CCCcEEEecCCCCCC--CCCcC
Confidence            3456876   778899965321      111236899999999987 4444  343  899999999998874  66666


Q ss_pred             cCcCccccCCcchhhhhhcCCCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCC
Q 048333           91 INLSRLELQKPSFENLFEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLS  170 (413)
Q Consensus        91 ~~L~~L~l~~~~i~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~  170 (413)
                      .+|+.|++.++.+...-..+++|++|++++|.+.+ +|.   .+++|++|++++|.++.            +|..   ++
T Consensus        81 ~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~------------lp~~---l~  141 (622)
T 3g06_A           81 PELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLTS------------LPVL---PP  141 (622)
T ss_dssp             TTCCEEEECSCCCSCCCCCCTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCSC------------CCCC---CT
T ss_pred             CCCCEEEcCCCcCCcCCCCCCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCCc------------CCCC---CC
Confidence            67777777766655443366777777777777764 333   45677777777777652            3332   36


Q ss_pred             CccEEECCCCccccccccccccccccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCC
Q 048333          171 KLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNF  250 (413)
Q Consensus       171 ~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~  250 (413)
                      +|++|++++|.++..          |.   .+.+|+.|++++|.+.. +|   ..+++|+.|++++|.+.. ++.   .+
T Consensus       142 ~L~~L~Ls~N~l~~l----------~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~---~~  200 (622)
T 3g06_A          142 GLQELSVSDNQLASL----------PA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPT---LP  200 (622)
T ss_dssp             TCCEEECCSSCCSCC----------CC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CC
T ss_pred             CCCEEECcCCcCCCc----------CC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCC---cc
Confidence            777777777776632          22   23567777777777653 44   345677777777777653 332   23


Q ss_pred             CCCcEEEecCCccccccchhhccCCCCCeEecCCcccCCcccccccCCCCCcEEEccCCcccccccccccCCCCCCEEEC
Q 048333          251 SSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDM  330 (413)
Q Consensus       251 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l  330 (413)
                      ++|+.|++++|.+. .++.   .+++|+.|++++|.+.. ++   ..+++|+.|++++|.++ .+|.   .+++|+.|++
T Consensus       201 ~~L~~L~L~~N~l~-~l~~---~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~L  268 (622)
T 3g06_A          201 SELYKLWAYNNRLT-SLPA---LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSV  268 (622)
T ss_dssp             TTCCEEECCSSCCS-SCCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEEC
T ss_pred             chhhEEECcCCccc-ccCC---CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeC
Confidence            66777777777663 3332   23667777777777664 22   34567777777777776 3443   4567777777


Q ss_pred             CCCcCcceechhHhhhcccCCCeeeccCcccc
Q 048333          331 AQNSYGGTVELDVLLTSWKNLEALDISLNRSS  362 (413)
Q Consensus       331 ~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~i~  362 (413)
                      ++|.+. .++ . .+..+++|+.|++++|+++
T Consensus       269 s~N~L~-~lp-~-~l~~l~~L~~L~L~~N~l~  297 (622)
T 3g06_A          269 YRNQLT-RLP-E-SLIHLSSETTVNLEGNPLS  297 (622)
T ss_dssp             CSSCCC-SCC-G-GGGGSCTTCEEECCSCCCC
T ss_pred             CCCCCC-cCC-H-HHhhccccCEEEecCCCCC
Confidence            777776 333 2 4667777777777777754

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.90  E-value=1.7e-22  Score=179.67  Aligned_cols=216  Identities=24%  Similarity=0.230  Sum_probs=131.7

Q ss_pred             CCCcccceEEeeCCCCceEEEecCCCccccccCCccccccccccceeeccccCCCCCCCCccccCcCccccCCcchhhhh
Q 048333           28 VDCYSWDVVHCNKNTGHVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENLF  107 (413)
Q Consensus        28 ~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~  107 (413)
                      .++|.|.++.|.- ....+.++++++.++. ++.  .+.  +++++|++++|.+...  +                +..+
T Consensus         2 ~~~C~~~~~~C~c-~~~~~~l~~~~~~l~~-ip~--~~~--~~l~~L~l~~n~l~~~--~----------------~~~~   57 (270)
T 2o6q_A            2 EALCKKDGGVCSC-NNNKNSVDCSSKKLTA-IPS--NIP--ADTKKLDLQSNKLSSL--P----------------SKAF   57 (270)
T ss_dssp             CCCBGGGTCSBEE-ETTTTEEECTTSCCSS-CCS--CCC--TTCSEEECCSSCCSCC--C----------------TTSS
T ss_pred             CccCCCCCCCCEe-CCCCCEEEccCCCCCc-cCC--CCC--CCCCEEECcCCCCCee--C----------------HHHh
Confidence            5899999988752 2456678888887763 333  232  5788888888876643  1                1235


Q ss_pred             hcCCCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCccccccc
Q 048333          108 EKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAA  187 (413)
Q Consensus       108 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~  187 (413)
                      ..+++|++|++++|.+....+..+..+++|++|++++|.+..           ..+..+..+++|++|++++|.++..  
T Consensus        58 ~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~-----------~~~~~~~~l~~L~~L~l~~n~l~~~--  124 (270)
T 2o6q_A           58 HRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQA-----------LPIGVFDQLVNLAELRLDRNQLKSL--  124 (270)
T ss_dssp             SSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCC-----------CCTTTTTTCSSCCEEECCSSCCCCC--
T ss_pred             cCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCc-----------CCHhHcccccCCCEEECCCCccCee--
Confidence            567788888888887775555556777888888888777662           2234456677777777777776643  


Q ss_pred             cccccccccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCcccccc
Q 048333          188 SFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKV  267 (413)
Q Consensus       188 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~  267 (413)
                             .+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|++|++++|.+....
T Consensus       125 -------~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  197 (270)
T 2o6q_A          125 -------PPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVP  197 (270)
T ss_dssp             -------CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             -------CHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCC
Confidence                   2334566667777777776665444444556666666666666555443444455555555555555543333


Q ss_pred             chhhccCCCCCeEecCCccc
Q 048333          268 PHSIGNFTRLQFLFLGFNNF  287 (413)
Q Consensus       268 ~~~~~~~~~L~~L~l~~~~~  287 (413)
                      +..+..+++|+.|++++|.+
T Consensus       198 ~~~~~~l~~L~~L~l~~N~~  217 (270)
T 2o6q_A          198 EGAFDSLEKLKMLQLQENPW  217 (270)
T ss_dssp             TTTTTTCTTCCEEECCSSCB
T ss_pred             HHHhccccCCCEEEecCCCe
Confidence            33344444555555554443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.90  E-value=3.8e-23  Score=199.09  Aligned_cols=237  Identities=17%  Similarity=0.117  Sum_probs=181.4

Q ss_pred             cCCCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCcccccccc
Q 048333          109 KLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAAS  188 (413)
Q Consensus       109 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~  188 (413)
                      .+++|++|++++|.+.+..|..+..+++|++|++++|.++.           ..+  +..+++|+.|++++|.+++.   
T Consensus        32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-----------~~~--l~~l~~L~~L~Ls~N~l~~l---   95 (487)
T 3oja_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE-----------TLD--LESLSTLRTLDLNNNYVQEL---   95 (487)
T ss_dssp             TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEE-----------EEE--CTTCTTCCEEECCSSEEEEE---
T ss_pred             cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCC-----------Ccc--cccCCCCCEEEecCCcCCCC---
Confidence            34589999999999988778889999999999999999873           222  78899999999999998743   


Q ss_pred             ccccccccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccc
Q 048333          189 FRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVP  268 (413)
Q Consensus       189 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~  268 (413)
                             +    ..++|+.|++++|.+....+.   .+++|+.|++++|.+....+..+..+++|+.|++++|.+.+..+
T Consensus        96 -------~----~~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  161 (487)
T 3oja_A           96 -------L----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF  161 (487)
T ss_dssp             -------E----ECTTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEG
T ss_pred             -------C----CCCCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcCh
Confidence                   2    227899999999988755443   45789999999998887777778888899999999998877666


Q ss_pred             hhhc-cCCCCCeEecCCcccCCcccccccCCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcceechhHhhhc
Q 048333          269 HSIG-NFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTS  347 (413)
Q Consensus       269 ~~~~-~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~  347 (413)
                      ..+. .+++|++|++++|.+.+.  .....+++|+.|++++|.+++ ++..+..+++|+.|++++|.+.+...   .+..
T Consensus       162 ~~l~~~l~~L~~L~Ls~N~l~~~--~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~lp~---~l~~  235 (487)
T 3oja_A          162 AELAASSDTLEHLNLQYNFIYDV--KGQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVLIEK---ALRF  235 (487)
T ss_dssp             GGGGGGTTTCCEEECTTSCCCEE--ECCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCEECT---TCCC
T ss_pred             HHHhhhCCcccEEecCCCccccc--cccccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcccch---hhcc
Confidence            6665 688999999999988753  234458889999999998875 44457788889999999988875333   4677


Q ss_pred             ccCCCeeeccCccccccceeeecccccc-ccccceeeecc
Q 048333          348 WKNLEALDISLNRSSVLTKATFDATTDT-TSQKIQYRGLR  386 (413)
Q Consensus       348 ~~~L~~L~l~~~~i~~l~~~~~~~~~~~-~~~~L~~L~l~  386 (413)
                      +++|+.|++++|.+..     +..+... .++.|+.+++.
T Consensus       236 l~~L~~L~l~~N~l~c-----~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          236 SQNLEHFDLRGNGFHC-----GTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             CTTCCEEECTTCCBCH-----HHHHHHHTTCHHHHHHHHH
T ss_pred             CCCCCEEEcCCCCCcC-----cchHHHHHhCCCCcEEecc
Confidence            8888999999888531     1222222 45556666554

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.89  E-value=1.2e-22  Score=195.51  Aligned_cols=234  Identities=19%  Similarity=0.143  Sum_probs=188.9

Q ss_pred             CCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCccccccccccccccccccccCCCCccEEeCCCC
Q 048333          134 LSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQN  213 (413)
Q Consensus       134 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~  213 (413)
                      +++|++|++++|.+.           +..|..+..+++|+.|++++|.+++.         .|  +..+++|+.|++++|
T Consensus        33 ~~~L~~L~Ls~n~l~-----------~~~~~~~~~l~~L~~L~Ls~N~l~~~---------~~--l~~l~~L~~L~Ls~N   90 (487)
T 3oja_A           33 AWNVKELDLSGNPLS-----------QISAADLAPFTKLELLNLSSNVLYET---------LD--LESLSTLRTLDLNNN   90 (487)
T ss_dssp             GGGCCEEECCSSCCC-----------CCCGGGGTTCTTCCEEECTTSCCEEE---------EE--CTTCTTCCEEECCSS
T ss_pred             CCCccEEEeeCCcCC-----------CCCHHHHhCCCCCCEEEeeCCCCCCC---------cc--cccCCCCCEEEecCC
Confidence            448999999999987           34567789999999999999998753         22  788899999999999


Q ss_pred             cCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccCCCCCeEecCCcccCCcccc
Q 048333          214 GFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLG  293 (413)
Q Consensus       214 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  293 (413)
                      .+.. ++    ..++|+.|++++|.+....+.   .+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+.
T Consensus        91 ~l~~-l~----~~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~  162 (487)
T 3oja_A           91 YVQE-LL----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA  162 (487)
T ss_dssp             EEEE-EE----ECTTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGG
T ss_pred             cCCC-CC----CCCCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChH
Confidence            8863 22    338999999999988754443   457899999999999777777888999999999999999876666


Q ss_pred             ccc-CCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcceechhHhhhcccCCCeeeccCccccccceeeeccc
Q 048333          294 SIG-NLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTKATFDAT  372 (413)
Q Consensus       294 ~l~-~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~  372 (413)
                      .+. .+++|+.|++++|.+++..+  ...+++|+.|++++|.+.+..+   .+..+++|+.|++++|.++.++       
T Consensus       163 ~l~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~---~~~~l~~L~~L~Ls~N~l~~lp-------  230 (487)
T 3oja_A          163 ELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGP---EFQSAAGVTWISLRNNKLVLIE-------  230 (487)
T ss_dssp             GGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECG---GGGGGTTCSEEECTTSCCCEEC-------
T ss_pred             HHhhhCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCCCCH---hHcCCCCccEEEecCCcCcccc-------
Confidence            665 68999999999999985422  3358999999999999986555   4778899999999999966433       


Q ss_pred             ccc-ccccceeeeccCCCCC--CcchHhhcCCCCcEEeCC
Q 048333          373 TDT-TSQKIQYRGLRSCNLT--KFPNFLENQNHLVILNLS  409 (413)
Q Consensus       373 ~~~-~~~~L~~L~l~~~~l~--~l~~~~~~l~~L~~L~l~  409 (413)
                      ..+ .+++|+.|++++|.+.  .+|..+..++.|+.+++.
T Consensus       231 ~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          231 KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             TTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred             hhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence            223 5678999999999998  777888888887776653

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.89  E-value=1.5e-21  Score=174.20  Aligned_cols=202  Identities=23%  Similarity=0.199  Sum_probs=121.2

Q ss_pred             CccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccCCCCCeEecC
Q 048333          204 SLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLG  283 (413)
Q Consensus       204 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  283 (413)
                      ++++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|+++
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  108 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  108 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence            45555555555543333345555555666665555554444455556666666666666544444556666666666666


Q ss_pred             CcccCCcccccccCCCCCcEEEccCCccccc-ccccccCCCCCCEEECCCCcCcceechhHhhhcccCCC----eeeccC
Q 048333          284 FNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQ-ITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLE----ALDISL  358 (413)
Q Consensus       284 ~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~-~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~----~L~l~~  358 (413)
                      +|.+.......+..+++|+.|++++|.+++. +|..+..+++|++|++++|.+.+..+ . .+..+++|+    +|++++
T Consensus       109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~-~-~~~~l~~L~~l~l~L~ls~  186 (276)
T 2z62_A          109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC-T-DLRVLHQMPLLNLSLDLSL  186 (276)
T ss_dssp             TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG-G-GGHHHHTCTTCCEEEECCS
T ss_pred             CCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCH-H-HhhhhhhccccceeeecCC
Confidence            6666544444566667777777777776642 46666777777777777777764332 2 444555555    677777


Q ss_pred             ccccccceeeeccccccccccceeeeccCCCCCCcchH-hhcCCCCcEEeCCCCCC
Q 048333          359 NRSSVLTKATFDATTDTTSQKIQYRGLRSCNLTKFPNF-LENQNHLVILNLSDNRI  413 (413)
Q Consensus       359 ~~i~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~-~~~l~~L~~L~l~~n~i  413 (413)
                      |.++.++...+      ...+|++|++++|.++.+|.. +.++++|+.|++++|++
T Consensus       187 n~l~~~~~~~~------~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~  236 (276)
T 2z62_A          187 NPMNFIQPGAF------KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW  236 (276)
T ss_dssp             SCCCEECTTSS------CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCB
T ss_pred             CcccccCcccc------CCCcccEEECCCCceeecCHhHhcccccccEEEccCCcc
Confidence            77554332221      233677777777777766543 46677777777777764

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.89  E-value=8.8e-24  Score=209.39  Aligned_cols=349  Identities=13%  Similarity=0.034  Sum_probs=232.2

Q ss_pred             ceEEEecCCCcc-cc-ccCCccccccccccceeeccccCCCCCC------CCccccCcCccccCCcch--------hhhh
Q 048333           44 HVIKLNLSHGCL-FG-SINSSSSLFKLVHLKWLNLALNDFNSSE------IPPEIINLSRLELQKPSF--------ENLF  107 (413)
Q Consensus        44 ~l~~L~l~~~~~-~~-~~~~~~~~~~l~~L~~L~l~~~~~~~~~------~~~~~~~L~~L~l~~~~i--------~~~~  107 (413)
                      ++++|++++|.. .. ....  ....+++|++|++++|.+.+..      ++..+.+|+.|++..+.+        +..+
T Consensus       139 ~L~~L~L~~~~~~~~~~l~~--~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~  216 (592)
T 3ogk_B          139 DLETLKLDKCSGFTTDGLLS--IVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIA  216 (592)
T ss_dssp             GCCEEEEESCEEEEHHHHHH--HHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHH
T ss_pred             cCcEEECcCCCCcCHHHHHH--HHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHH
Confidence            499999988862 11 1111  3347899999999998775442      233567788887764433        4456


Q ss_pred             hcCCCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccc--------cchh------hhhh-cccCCCccccCCCCc
Q 048333          108 EKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQA--------MCSF------FLIQ-ISGRIPSSLGNLSKL  172 (413)
Q Consensus       108 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~--------~~~~------~~~~-~~~~~~~~l~~~~~L  172 (413)
                      ..+++|++|++++|.+.+ ++..+..+++|++|.++.+....        +...      .+.. ....++..+..+++|
T Consensus       217 ~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L  295 (592)
T 3ogk_B          217 RNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQI  295 (592)
T ss_dssp             HHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGC
T ss_pred             hhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCC
Confidence            788999999999888764 55667777778877776432110        0000      0000 013345556678899


Q ss_pred             cEEECCCCccccccccccccccccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccC-----------CcCcc
Q 048333          173 LHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSF-----------NKLSG  241 (413)
Q Consensus       173 ~~L~l~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~-----------~~~~~  241 (413)
                      ++|++++|.+++.        .++..+..+++|++|+++.+.....++.....+++|++|++++           +.++.
T Consensus       296 ~~L~Ls~~~l~~~--------~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~  367 (592)
T 3ogk_B          296 RKLDLLYALLETE--------DHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQ  367 (592)
T ss_dssp             CEEEETTCCCCHH--------HHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCH
T ss_pred             cEEecCCCcCCHH--------HHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCH
Confidence            9999999887644        1333467899999999984333333445557789999999994           34432


Q ss_pred             c-CCcccCCCCCCcEEEecCCccccccchhhcc-CCCCCeEecC----CcccCCc-----ccccccCCCCCcEEEccCCc
Q 048333          242 E-FPWSTGNFSSLKLLNLRSCGFWSKVPHSIGN-FTRLQFLFLG----FNNFSGD-----LLGSIGNLRSLEVIYIAKCN  310 (413)
Q Consensus       242 ~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~----~~~~~~~-----~~~~l~~~~~L~~L~L~~~~  310 (413)
                      . .......+++|+.|++..+.+.+.....+.. +++|+.|+++    .+.+++.     ....+..+++|+.|+++.|.
T Consensus       368 ~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~  447 (592)
T 3ogk_B          368 RGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQ  447 (592)
T ss_dssp             HHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCG
T ss_pred             HHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCC
Confidence            2 2222345799999999888887666666655 8999999996    4455542     22235568999999997654


Q ss_pred             --ccccccccc-cCCCCCCEEECCCCcCcceechhHhhhcccCCCeeeccCccccccceeeecccccc--ccccceeeec
Q 048333          311 --FSGQITSSL-RNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDT--TSQKIQYRGL  385 (413)
Q Consensus       311 --~~~~~~~~~-~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~--~~~~L~~L~l  385 (413)
                        +++.....+ ..+++|+.|++++|.+++... ...+.++++|++|++++|.++      .......  .+++|++|++
T Consensus       448 ~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~~~~~L~~L~l~~n~l~------~~~~~~~~~~l~~L~~L~l  520 (592)
T 3ogk_B          448 GGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGL-MEFSRGCPNLQKLEMRGCCFS------ERAIAAAVTKLPSLRYLWV  520 (592)
T ss_dssp             GGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHH-HHHHTCCTTCCEEEEESCCCB------HHHHHHHHHHCSSCCEEEE
T ss_pred             CCccHHHHHHHHHhCccceEeeccCCCCCHHHH-HHHHhcCcccCeeeccCCCCc------HHHHHHHHHhcCccCeeEC
Confidence              554433333 458999999999999875333 336788999999999999842      2222222  6789999999


Q ss_pred             cCCCCC--CcchHhhcCCCCcEEeCCC
Q 048333          386 RSCNLT--KFPNFLENQNHLVILNLSD  410 (413)
Q Consensus       386 ~~~~l~--~l~~~~~~l~~L~~L~l~~  410 (413)
                      ++|+++  .+......+|.+....+..
T Consensus       521 s~n~it~~~~~~l~~~~p~l~~~~~~~  547 (592)
T 3ogk_B          521 QGYRASMTGQDLMQMARPYWNIELIPS  547 (592)
T ss_dssp             ESCBCCTTCTTGGGGCCTTEEEEEECC
T ss_pred             cCCcCCHHHHHHHHHhCCCcEEEEecC
Confidence            999988  3334445678777665543

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.88  E-value=9.7e-25  Score=216.34  Aligned_cols=332  Identities=15%  Similarity=0.114  Sum_probs=172.9

Q ss_pred             ccccccceeeccccCCCCCC---CCccccCcCccccCCc-c-----hhhhhhcCCCCcEEEcCCccCCCCcCc----ccc
Q 048333           66 FKLVHLKWLNLALNDFNSSE---IPPEIINLSRLELQKP-S-----FENLFEKLSNLKTLNLGDVSIDSTIPH----NIK  132 (413)
Q Consensus        66 ~~l~~L~~L~l~~~~~~~~~---~~~~~~~L~~L~l~~~-~-----i~~~~~~~~~L~~L~l~~~~~~~~~~~----~~~  132 (413)
                      ..+++|++|+++++.+++..   +...+.+|+.|++..+ .     ++..+..+++|++|++++|.+++..+.    ...
T Consensus       102 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~  181 (594)
T 2p1m_B          102 SSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD  181 (594)
T ss_dssp             HHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCT
T ss_pred             HhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhh
Confidence            45677777777777655431   1123456677666543 2     344455778888888877776543322    223


Q ss_pred             CCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCC-ccccccc------------------------
Q 048333          133 NLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLN-ELQGEAA------------------------  187 (413)
Q Consensus       133 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~i~~~~~------------------------  187 (413)
                      .+++|++|++++|. ..+..       ..+...+..+++|++|++++| .+.+...                        
T Consensus       182 ~~~~L~~L~l~~~~-~~~~~-------~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~  253 (594)
T 2p1m_B          182 TYTSLVSLNISCLA-SEVSF-------SALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDV  253 (594)
T ss_dssp             TCCCCCEEECTTCC-SCCCH-------HHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHH
T ss_pred             cCCcCcEEEecccC-CcCCH-------HHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhh
Confidence            56677777777765 11100       001111223455555555554 1110000                        


Q ss_pred             ------------------cc--cccccccccccCCCCccEEeCCCCcCCCc-chhhhhCCCCCCEEEccCCcCcccCCcc
Q 048333          188 ------------------SF--RCFGELPISMGNLGSLKELDLSQNGFFGE-LPTSIRNLFSLEKLDLSFNKLSGEFPWS  246 (413)
Q Consensus       188 ------------------~~--~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~  246 (413)
                                        .+  ...+.++..+..+++|++|++++|.+... +...+..+++|+.|++++|.....++..
T Consensus       254 ~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l  333 (594)
T 2p1m_B          254 YSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVL  333 (594)
T ss_dssp             HHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHH
T ss_pred             HHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHH
Confidence                              00  00001222223456666666666664322 2223445666666666655111112222


Q ss_pred             cCCCCCCcEEEecC---------Cccccccchhh-ccCCCCCeEecCCcccCCccccccc-CCCCCcEEEcc--C----C
Q 048333          247 TGNFSSLKLLNLRS---------CGFWSKVPHSI-GNFTRLQFLFLGFNNFSGDLLGSIG-NLRSLEVIYIA--K----C  309 (413)
Q Consensus       247 l~~~~~L~~L~l~~---------~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~L~--~----~  309 (413)
                      ...+++|++|++.+         +.+.+.....+ ..+++|+.|.+..+.+.+.....+. .+++|+.|++.  +    +
T Consensus       334 ~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~  413 (594)
T 2p1m_B          334 ASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPD  413 (594)
T ss_dssp             HHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCC
T ss_pred             HHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcc
Confidence            22356666676633         22222222222 2366777776666666544444443 36778888877  3    3


Q ss_pred             cccc-----cccccccCCCCCCEEECCCCcCcceechhHhhhcccCCCeeeccCccccccceeeecccccc--cccccee
Q 048333          310 NFSG-----QITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDT--TSQKIQY  382 (413)
Q Consensus       310 ~~~~-----~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~--~~~~L~~  382 (413)
                      .+++     .++..+..+++|+.|++++ .+.+... ......+++|++|++++|.++.      .....+  .+++|++
T Consensus       414 ~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~-~~l~~~~~~L~~L~L~~~~i~~------~~~~~l~~~~~~L~~  485 (594)
T 2p1m_B          414 YLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVF-EYIGTYAKKMEMLSVAFAGDSD------LGMHHVLSGCDSLRK  485 (594)
T ss_dssp             TTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHH-HHHHHHCTTCCEEEEESCCSSH------HHHHHHHHHCTTCCE
T ss_pred             cccCCchhhHHHHHHhhCCCccEEeecC-cccHHHH-HHHHHhchhccEeeccCCCCcH------HHHHHHHhcCCCcCE
Confidence            3331     1122345677888888866 4443222 2123347778888888887432      111111  4678888


Q ss_pred             eeccCCCCC--CcchHhhcCCCCcEEeCCCCCC
Q 048333          383 RGLRSCNLT--KFPNFLENQNHLVILNLSDNRI  413 (413)
Q Consensus       383 L~l~~~~l~--~l~~~~~~l~~L~~L~l~~n~i  413 (413)
                      |++++|.++  .+...+..+++|+.|++++|++
T Consensus       486 L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          486 LEIRDCPFGDKALLANASKLETMRSLWMSSCSV  518 (594)
T ss_dssp             EEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred             EECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence            888888886  2333455678888888888864

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.88  E-value=6e-24  Score=195.46  Aligned_cols=262  Identities=18%  Similarity=0.200  Sum_probs=143.2

Q ss_pred             CCCCcccceEEeeCCCCceEEEecCCCccccccCCccccccc--cccceeeccccCCCCCCCCccccCcCccccCCcchh
Q 048333           27 SVDCYSWDVVHCNKNTGHVIKLNLSHGCLFGSINSSSSLFKL--VHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFE  104 (413)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~l--~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~  104 (413)
                      ...|.+|..+.+.  ...++.++++++.+..   .  .+..+  ++++.|+++++.+.+. .+.                
T Consensus        33 ~~vc~~W~~~~~~--~~~~~~l~l~~~~~~~---~--~~~~~~~~~l~~L~l~~n~l~~~-~~~----------------   88 (336)
T 2ast_B           33 SGVCKRWYRLASD--ESLWQTLDLTGKNLHP---D--VTGRLLSQGVIAFRCPRSFMDQP-LAE----------------   88 (336)
T ss_dssp             TSSCHHHHHHHTC--STTSSEEECTTCBCCH---H--HHHHHHHTTCSEEECTTCEECSC-CCS----------------
T ss_pred             HHHHHHHHHHhcC--chhheeeccccccCCH---H--HHHhhhhccceEEEcCCcccccc-chh----------------
Confidence            6677888887653  3456677777665541   1  34444  6666666666655443 111                


Q ss_pred             hhhhcCCCCcEEEcCCccCCCC-cCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCC-cc
Q 048333          105 NLFEKLSNLKTLNLGDVSIDST-IPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLN-EL  182 (413)
Q Consensus       105 ~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~i  182 (413)
                        +..+++|++|++++|.+.+. ++..+..+++|++|++++|.++           +..+..++.+++|++|++++| .+
T Consensus        89 --~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~-----------~~~~~~l~~~~~L~~L~L~~~~~l  155 (336)
T 2ast_B           89 --HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLS-----------DPIVNTLAKNSNLVRLNLSGCSGF  155 (336)
T ss_dssp             --CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCC-----------HHHHHHHTTCTTCSEEECTTCBSC
T ss_pred             --hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccC-----------HHHHHHHhcCCCCCEEECCCCCCC
Confidence              22355666666666655433 4445555566666666665544           123334445555555555555 33


Q ss_pred             ccccccccccccccccccCCCCccEEeCCCC-cCCCc-chhhhhCCCCCCEEEccCCcCcccCCcccCCCC-CCcEEEec
Q 048333          183 QGEAASFRCFGELPISMGNLGSLKELDLSQN-GFFGE-LPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFS-SLKLLNLR  259 (413)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~-~L~~L~l~  259 (413)
                      ++.        .++..+..+++|++|++++| .+... ++..+.                        .++ +|++|+++
T Consensus       156 ~~~--------~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~------------------------~l~~~L~~L~l~  203 (336)
T 2ast_B          156 SEF--------ALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVA------------------------HVSETITQLNLS  203 (336)
T ss_dssp             CHH--------HHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHH------------------------HSCTTCCEEECC
T ss_pred             CHH--------HHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHH------------------------hcccCCCEEEeC
Confidence            321        12223344445555555544 33321 233333                        444 55555555


Q ss_pred             CC--ccc-cccchhhccCCCCCeEecCCcc-cCCcccccccCCCCCcEEEccCCc-ccccccccccCCCCCCEEECCCCc
Q 048333          260 SC--GFW-SKVPHSIGNFTRLQFLFLGFNN-FSGDLLGSIGNLRSLEVIYIAKCN-FSGQITSSLRNLTQLVVLDMAQNS  334 (413)
Q Consensus       260 ~~--~~~-~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~L~~~~-~~~~~~~~~~~~~~L~~L~l~~n~  334 (413)
                      +|  .+. ...+..+..+++|++|++++|. +++..+..+..+++|+.|++++|. +.......+..+++|+.|++++| 
T Consensus       204 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-  282 (336)
T 2ast_B          204 GYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-  282 (336)
T ss_dssp             SCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-
T ss_pred             CCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-
Confidence            55  222 2344455667777777777776 555556666777788888887774 33333335667888888888888 


Q ss_pred             CcceechhHhhhcc-cCCCeeeccCccccc
Q 048333          335 YGGTVELDVLLTSW-KNLEALDISLNRSSV  363 (413)
Q Consensus       335 ~~~~~~~~~~~~~~-~~L~~L~l~~~~i~~  363 (413)
                      +....     +..+ ..++.|++++|.++.
T Consensus       283 i~~~~-----~~~l~~~l~~L~l~~n~l~~  307 (336)
T 2ast_B          283 VPDGT-----LQLLKEALPHLQINCSHFTT  307 (336)
T ss_dssp             SCTTC-----HHHHHHHSTTSEESCCCSCC
T ss_pred             cCHHH-----HHHHHhhCcceEEecccCcc
Confidence            43211     1222 236667788888544

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.88  E-value=1.9e-21  Score=173.52  Aligned_cols=206  Identities=19%  Similarity=0.180  Sum_probs=143.9

Q ss_pred             CCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCcccccccccc
Q 048333          111 SNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFR  190 (413)
Q Consensus       111 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~  190 (413)
                      ++|++|++++|.+.+..+..+.++++|++|++++|.+..           ..+..+.++++|++|++++|.++..     
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-----------~~~~~~~~l~~L~~L~L~~n~l~~~-----   91 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT-----------IEDGAYQSLSHLSTLILTGNPIQSL-----   91 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCE-----------ECTTTTTTCTTCCEEECTTCCCCEE-----
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCc-----------cCHHHccCCcCCCEEECCCCccCcc-----
Confidence            568888888888876555577888888888888887763           2344677788888888888887754     


Q ss_pred             ccccccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCccc-CCcccCCCCCCcEEEecCCccccccch
Q 048333          191 CFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGE-FPWSTGNFSSLKLLNLRSCGFWSKVPH  269 (413)
Q Consensus       191 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~  269 (413)
                          .+..+..+++|++|++++|.+....+..+..+++|++|++++|.+... +|..+..+++|++|++++|.+.+..+.
T Consensus        92 ----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~  167 (276)
T 2z62_A           92 ----ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT  167 (276)
T ss_dssp             ----CTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred             ----ChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHH
Confidence                335577778888888888877655554677778888888888777642 466777777888888887777555555


Q ss_pred             hhccCCCCC----eEecCCcccCCcccccccCCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcc
Q 048333          270 SIGNFTRLQ----FLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGG  337 (413)
Q Consensus       270 ~~~~~~~L~----~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~  337 (413)
                      .+..+++|+    .|++++|.+....+..+ ...+|+.|++++|.+++..+..+..+++|+.|++++|.+..
T Consensus       168 ~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c  238 (276)
T 2z62_A          168 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  238 (276)
T ss_dssp             GGHHHHTCTTCCEEEECCSSCCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred             HhhhhhhccccceeeecCCCcccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence            555555555    67777777664333333 23467777777777765555556667777777777776654

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.88  E-value=1.2e-20  Score=167.69  Aligned_cols=204  Identities=21%  Similarity=0.217  Sum_probs=153.9

Q ss_pred             CCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCcccccccccc
Q 048333          111 SNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFR  190 (413)
Q Consensus       111 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~  190 (413)
                      ...++++++++.++ .+|..+  .+++++|++++|.+..           ..+..+.++++|++|++++|.++..     
T Consensus        16 ~~~~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~l~~-----------~~~~~~~~l~~L~~L~l~~n~l~~i-----   76 (270)
T 2o6q_A           16 NNKNSVDCSSKKLT-AIPSNI--PADTKKLDLQSNKLSS-----------LPSKAFHRLTKLRLLYLNDNKLQTL-----   76 (270)
T ss_dssp             TTTTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCSC-----------CCTTSSSSCTTCCEEECCSSCCSCC-----
T ss_pred             CCCCEEEccCCCCC-ccCCCC--CCCCCEEECcCCCCCe-----------eCHHHhcCCCCCCEEECCCCccCee-----
Confidence            35778888888887 455544  2678889998888763           3345678888899999988888743     


Q ss_pred             ccccccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchh
Q 048333          191 CFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHS  270 (413)
Q Consensus       191 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~  270 (413)
                          .+..+..+++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|++++|.+....+..
T Consensus        77 ----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~  152 (270)
T 2o6q_A           77 ----PAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGV  152 (270)
T ss_dssp             ----CTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred             ----ChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhH
Confidence                2234577888888888888887555566778888888888888887666666778888888888888876555555


Q ss_pred             hccCCCCCeEecCCcccCCcccccccCCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcc
Q 048333          271 IGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGG  337 (413)
Q Consensus       271 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~  337 (413)
                      +..+++|+.|++++|.+....+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+..
T Consensus       153 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  219 (270)
T 2o6q_A          153 FDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC  219 (270)
T ss_dssp             TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             ccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence            7778888888888888876555667778888888888888875555567778888888888887653

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.87  E-value=2.9e-21  Score=171.88  Aligned_cols=200  Identities=24%  Similarity=0.241  Sum_probs=94.2

Q ss_pred             CCCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCccccccccc
Q 048333          110 LSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASF  189 (413)
Q Consensus       110 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~  189 (413)
                      +++|++|+++++.+.. ++ .+..+++|++|++++|.+..            + ..+..+++|++|++++|.++..    
T Consensus        40 l~~L~~L~l~~~~i~~-~~-~l~~l~~L~~L~l~~n~l~~------------~-~~l~~l~~L~~L~L~~n~l~~~----  100 (272)
T 3rfs_A           40 LNSIDQIIANNSDIKS-VQ-GIQYLPNVRYLALGGNKLHD------------I-SALKELTNLTYLILTGNQLQSL----  100 (272)
T ss_dssp             HTTCCEEECTTSCCCC-CT-TGGGCTTCCEEECTTSCCCC------------C-GGGTTCTTCCEEECTTSCCCCC----
T ss_pred             ccceeeeeeCCCCccc-cc-ccccCCCCcEEECCCCCCCC------------c-hhhcCCCCCCEEECCCCccCcc----
Confidence            4444555554444431 11 24444555555555544431            1 2344444555555555544422    


Q ss_pred             cccccccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccch
Q 048333          190 RCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPH  269 (413)
Q Consensus       190 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~  269 (413)
                           .+..+..+++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+.+..+.
T Consensus       101 -----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  175 (272)
T 3rfs_A          101 -----PNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEG  175 (272)
T ss_dssp             -----CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             -----ChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHH
Confidence                 122234445555555555554433333344555555555555554433333344555555555555555433333


Q ss_pred             hhccCCCCCeEecCCcccCCcccccccCCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcceec
Q 048333          270 SIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVE  340 (413)
Q Consensus       270 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~  340 (413)
                      .+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.       ..+++|+.++++.|.+.+.++
T Consensus       176 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~l~~~~n~~~g~ip  239 (272)
T 3rfs_A          176 VFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVR  239 (272)
T ss_dssp             TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC-------CCTTTTHHHHHHHHHTGGGBB
T ss_pred             HhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc-------ccCcHHHHHHHHHHhCCCccc
Confidence            4455555555555555555444444455555555555555443       224445555555555554443

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.87  E-value=7.9e-23  Score=191.62  Aligned_cols=248  Identities=18%  Similarity=0.191  Sum_probs=169.7

Q ss_pred             hhhhhhcCCCCcEEEcCCccCCCC----cCccccCCCCCcEEEccCCcccccchhhhhhcccCCCcc-------ccCCCC
Q 048333          103 FENLFEKLSNLKTLNLGDVSIDST----IPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSS-------LGNLSK  171 (413)
Q Consensus       103 i~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~-------l~~~~~  171 (413)
                      +...+..+++|++|++++|.+...    ++..+..+++|++|++++|.+..+.        +.+|..       +..+++
T Consensus        24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~--------~~~~~~~~~l~~~l~~~~~   95 (386)
T 2ca6_A           24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVK--------DEIPEALRLLLQALLKCPK   95 (386)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCG--------GGSHHHHHHHHHHHTTCTT
T ss_pred             HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccc--------cchhHHHHHHHHHHhhCCc
Confidence            345577889999999999988754    3344678899999999987654221        223333       367889


Q ss_pred             ccEEECCCCccccccccccccccccccccCCCCccEEeCCCCcCCCcch----hhhhCC---------CCCCEEEccCCc
Q 048333          172 LLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELP----TSIRNL---------FSLEKLDLSFNK  238 (413)
Q Consensus       172 L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~----~~l~~~---------~~L~~L~l~~~~  238 (413)
                      |++|++++|.++.....     .++..+..+++|++|++++|.+....+    ..+..+         ++|++|++++|.
T Consensus        96 L~~L~Ls~n~l~~~~~~-----~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~  170 (386)
T 2ca6_A           96 LHTVRLSDNAFGPTAQE-----PLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR  170 (386)
T ss_dssp             CCEEECCSCCCCTTTHH-----HHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred             ccEEECCCCcCCHHHHH-----HHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence            99999999988763221     255667788899999999988753323    334444         788888888887


Q ss_pred             Ccc-cCC---cccCCCCCCcEEEecCCcccc-----ccchhhccCCCCCeEecCCcccC----CcccccccCCCCCcEEE
Q 048333          239 LSG-EFP---WSTGNFSSLKLLNLRSCGFWS-----KVPHSIGNFTRLQFLFLGFNNFS----GDLLGSIGNLRSLEVIY  305 (413)
Q Consensus       239 ~~~-~~~---~~l~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~~----~~~~~~l~~~~~L~~L~  305 (413)
                      +.. ..+   ..+..+++|++|++++|.+..     ..+..+..+++|++|++++|.+.    ...+..+..+++|+.|+
T Consensus       171 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~  250 (386)
T 2ca6_A          171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG  250 (386)
T ss_dssp             CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEE
T ss_pred             CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEE
Confidence            752 233   345567788888888887742     22335677788888888888774    34455667778888888


Q ss_pred             ccCCccccc----cccccc--CCCCCCEEECCCCcCcce----echhHhhhcccCCCeeeccCcccccc
Q 048333          306 IAKCNFSGQ----ITSSLR--NLTQLVVLDMAQNSYGGT----VELDVLLTSWKNLEALDISLNRSSVL  364 (413)
Q Consensus       306 L~~~~~~~~----~~~~~~--~~~~L~~L~l~~n~~~~~----~~~~~~~~~~~~L~~L~l~~~~i~~l  364 (413)
                      +++|.+++.    ++..+.  .+++|+.|++++|.+.+.    ++ .....++++|++|++++|.++..
T Consensus       251 L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~-~~l~~~l~~L~~L~l~~N~l~~~  318 (386)
T 2ca6_A          251 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLK-TVIDEKMPDLLFLELNGNRFSEE  318 (386)
T ss_dssp             CTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHH-HHHHHHCTTCCEEECTTSBSCTT
T ss_pred             CCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHH-HHHHhcCCCceEEEccCCcCCcc
Confidence            888887644    344543  378888888888887752    33 21235578888888888886543

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.87  E-value=8.7e-22  Score=175.26  Aligned_cols=216  Identities=19%  Similarity=0.201  Sum_probs=174.4

Q ss_pred             CCCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCccccccccc
Q 048333          110 LSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASF  189 (413)
Q Consensus       110 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~  189 (413)
                      +.++..+++..+.+.+..  ....+++|+.|+++++.+..+             ..+..+++|++|++++|.+++.    
T Consensus        18 ~~~l~~l~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~-------------~~l~~l~~L~~L~l~~n~l~~~----   78 (272)
T 3rfs_A           18 FAETIKANLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV-------------QGIQYLPNVRYLALGGNKLHDI----   78 (272)
T ss_dssp             HHHHHHHHHTCSCTTSEE--CHHHHTTCCEEECTTSCCCCC-------------TTGGGCTTCCEEECTTSCCCCC----
T ss_pred             HHHHHHHHhcCccccccc--ccccccceeeeeeCCCCcccc-------------cccccCCCCcEEECCCCCCCCc----
Confidence            345556666666665432  355789999999999987632             3477899999999999998743    


Q ss_pred             cccccccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccch
Q 048333          190 RCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPH  269 (413)
Q Consensus       190 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~  269 (413)
                             ..+..+++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|++++|.+.+..+.
T Consensus        79 -------~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  151 (272)
T 3rfs_A           79 -------SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKG  151 (272)
T ss_dssp             -------GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             -------hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHH
Confidence                   3577889999999999999866667788999999999999998866666788889999999999988766666


Q ss_pred             hhccCCCCCeEecCCcccCCcccccccCCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcceechhHhhhccc
Q 048333          270 SIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWK  349 (413)
Q Consensus       270 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~  349 (413)
                      .+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.+         .++
T Consensus       152 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~---------~~~  222 (272)
T 3rfs_A          152 VFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC---------TCP  222 (272)
T ss_dssp             TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC---------CTT
T ss_pred             HhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc---------cCc
Confidence            67888999999999998886666667888999999999999987777778889999999999997653         466


Q ss_pred             CCCeeeccCcc
Q 048333          350 NLEALDISLNR  360 (413)
Q Consensus       350 ~L~~L~l~~~~  360 (413)
                      .|+.|++..|.
T Consensus       223 ~l~~l~~~~n~  233 (272)
T 3rfs_A          223 GIRYLSEWINK  233 (272)
T ss_dssp             TTHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            78888888887

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.87  E-value=1e-23  Score=209.00  Aligned_cols=229  Identities=13%  Similarity=0.064  Sum_probs=154.8

Q ss_pred             cCCCCccEEECCCCccccccccccccccccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccC---------C
Q 048333          167 GNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSF---------N  237 (413)
Q Consensus       167 ~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~---------~  237 (413)
                      ..+++|++|++++|.+++.        .++..+..+++|++|++++|.....++.....+++|+.|++.+         +
T Consensus       286 ~~~~~L~~L~L~~~~l~~~--------~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~  357 (594)
T 2p1m_B          286 SVCSRLTTLNLSYATVQSY--------DLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNV  357 (594)
T ss_dssp             HHHTTCCEEECTTCCCCHH--------HHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSS
T ss_pred             HhhCCCCEEEccCCCCCHH--------HHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCC
Confidence            3578999999999987643        1333466889999999998822222333344689999999944         2


Q ss_pred             cCcccCCccc-CCCCCCcEEEecCCccccccchhhc-cCCCCCeEecC--C----cccCCc-----ccccccCCCCCcEE
Q 048333          238 KLSGEFPWST-GNFSSLKLLNLRSCGFWSKVPHSIG-NFTRLQFLFLG--F----NNFSGD-----LLGSIGNLRSLEVI  304 (413)
Q Consensus       238 ~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~--~----~~~~~~-----~~~~l~~~~~L~~L  304 (413)
                      .++......+ ..+++|+.|.+..+.+.+.....+. .+++|+.|+++  +    +.+++.     ....+..+++|+.|
T Consensus       358 ~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L  437 (594)
T 2p1m_B          358 ALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRL  437 (594)
T ss_dssp             CCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEE
T ss_pred             CCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEE
Confidence            3332111112 2478999998888877655554454 58999999998  3    344421     11224568999999


Q ss_pred             EccCCcccccccccccC-CCCCCEEECCCCcCcceechhHhhhcccCCCeeeccCccccccceeeecccccc--ccccce
Q 048333          305 YIAKCNFSGQITSSLRN-LTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDT--TSQKIQ  381 (413)
Q Consensus       305 ~L~~~~~~~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~--~~~~L~  381 (413)
                      ++++ .+++..+..+.. +++|+.|++++|.+++... .....++++|++|++++|.++.      ......  .+++|+
T Consensus       438 ~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~-~~l~~~~~~L~~L~L~~n~~~~------~~~~~~~~~l~~L~  509 (594)
T 2p1m_B          438 SLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGM-HHVLSGCDSLRKLEIRDCPFGD------KALLANASKLETMR  509 (594)
T ss_dssp             ECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHH-HHHHHHCTTCCEEEEESCSCCH------HHHHHTGGGGGGSS
T ss_pred             eecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHH-HHHHhcCCCcCEEECcCCCCcH------HHHHHHHHhCCCCC
Confidence            9977 666554444444 8999999999999875433 3244779999999999999522      222211  578999


Q ss_pred             eeeccCCCCC-CcchHh-hcCCCCcEEeCCCC
Q 048333          382 YRGLRSCNLT-KFPNFL-ENQNHLVILNLSDN  411 (413)
Q Consensus       382 ~L~l~~~~l~-~l~~~~-~~l~~L~~L~l~~n  411 (413)
                      +|++++|.++ .-...+ ..+|+|+...+.++
T Consensus       510 ~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~  541 (594)
T 2p1m_B          510 SLWMSSCSVSFGACKLLGQKMPKLNVEVIDER  541 (594)
T ss_dssp             EEEEESSCCBHHHHHHHHHHCTTEEEEEECSS
T ss_pred             EEeeeCCCCCHHHHHHHHHhCCCCEEEEecCC
Confidence            9999999986 222333 67888876665543

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.87  E-value=6.8e-23  Score=192.04  Aligned_cols=257  Identities=13%  Similarity=0.094  Sum_probs=167.9

Q ss_pred             CcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCccccccccc-cccccccccccCCCC
Q 048333          126 TIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASF-RCFGELPISMGNLGS  204 (413)
Q Consensus       126 ~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~-~~~~~~~~~~~~l~~  204 (413)
                      .++..+..+++|++|++++|.+.....       ..++..+..+++|++|++++|.+......+ .....+...+..+++
T Consensus        23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~-------~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~   95 (386)
T 2ca6_A           23 SVFAVLLEDDSVKEIVLSGNTIGTEAA-------RWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPK   95 (386)
T ss_dssp             TTSHHHHHCSCCCEEECTTSEECHHHH-------HHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTT
T ss_pred             HHHHHHhcCCCccEEECCCCCCCHHHH-------HHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCc
Confidence            466677788999999999998774211       113344677899999999987554321100 000112233467889


Q ss_pred             ccEEeCCCCcCCC----cchhhhhCCCCCCEEEccCCcCcccCC----cccCCC---------CCCcEEEecCCcccc-c
Q 048333          205 LKELDLSQNGFFG----ELPTSIRNLFSLEKLDLSFNKLSGEFP----WSTGNF---------SSLKLLNLRSCGFWS-K  266 (413)
Q Consensus       205 L~~L~l~~~~~~~----~~~~~l~~~~~L~~L~l~~~~~~~~~~----~~l~~~---------~~L~~L~l~~~~~~~-~  266 (413)
                      |++|++++|.+..    .++..+..+++|++|++++|.+....+    ..+..+         ++|++|++++|.+.. .
T Consensus        96 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~  175 (386)
T 2ca6_A           96 LHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGS  175 (386)
T ss_dssp             CCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGG
T ss_pred             ccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHH
Confidence            9999999998875    366778888899999998888753222    223333         788888888887752 2


Q ss_pred             cc---hhhccCCCCCeEecCCcccCCc----ccc-cccCCCCCcEEEccCCccc----ccccccccCCCCCCEEECCCCc
Q 048333          267 VP---HSIGNFTRLQFLFLGFNNFSGD----LLG-SIGNLRSLEVIYIAKCNFS----GQITSSLRNLTQLVVLDMAQNS  334 (413)
Q Consensus       267 ~~---~~~~~~~~L~~L~l~~~~~~~~----~~~-~l~~~~~L~~L~L~~~~~~----~~~~~~~~~~~~L~~L~l~~n~  334 (413)
                      .+   ..+..+++|++|++++|.+.+.    ... .+..+++|+.|++++|.++    ..++..+..+++|+.|++++|.
T Consensus       176 ~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~  255 (386)
T 2ca6_A          176 MKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL  255 (386)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCC
T ss_pred             HHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCC
Confidence            33   3566778888888888877632    122 5667788888888888875    3456677778888888888888


Q ss_pred             Ccceech--hHhhh--cccCCCeeeccCccccccceeeecccccc--ccccceeeeccCCCCC
Q 048333          335 YGGTVEL--DVLLT--SWKNLEALDISLNRSSVLTKATFDATTDT--TSQKIQYRGLRSCNLT  391 (413)
Q Consensus       335 ~~~~~~~--~~~~~--~~~~L~~L~l~~~~i~~l~~~~~~~~~~~--~~~~L~~L~l~~~~l~  391 (413)
                      +.+....  ...+.  .+++|++|++++|.++..+  ....+..+  .+++|++|++++|.++
T Consensus       256 i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g--~~~l~~~l~~~l~~L~~L~l~~N~l~  316 (386)
T 2ca6_A          256 LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDA--VRTLKTVIDEKMPDLLFLELNGNRFS  316 (386)
T ss_dssp             CCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHH--HHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             CchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHH--HHHHHHHHHhcCCCceEEEccCCcCC
Confidence            7643211  11332  2778888888888754310  00122222  3577888888888877

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.86  E-value=8e-21  Score=170.40  Aligned_cols=204  Identities=20%  Similarity=0.251  Sum_probs=159.6

Q ss_pred             cccCCCCccEEECCCCccccccccccccccccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCC
Q 048333          165 SLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFP  244 (413)
Q Consensus       165 ~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~  244 (413)
                      .+.++++++.++++++.++.          +|..+.  +.++.|++++|.+....+..+..+++|+.|++++|.++...+
T Consensus         5 ~~~~l~~l~~l~~~~~~l~~----------ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~   72 (290)
T 1p9a_G            5 EVSKVASHLEVNCDKRNLTA----------LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV   72 (290)
T ss_dssp             EEECSTTCCEEECTTSCCSS----------CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC
T ss_pred             cccccCCccEEECCCCCCCc----------CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC
Confidence            46788899999999998874          444443  688999999999987777889999999999999998874333


Q ss_pred             cccCCCCCCcEEEecCCccccccchhhccCCCCCeEecCCcccCCcccccccCCCCCcEEEccCCcccccccccccCCCC
Q 048333          245 WSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQ  324 (413)
Q Consensus       245 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~  324 (413)
                        ...+++|++|++++|.+ ..+|..+..+++|++|++++|.+....+..+..+++|+.|++++|++++..+..+..+++
T Consensus        73 --~~~l~~L~~L~Ls~N~l-~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~  149 (290)
T 1p9a_G           73 --DGTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK  149 (290)
T ss_dssp             --CSCCTTCCEEECCSSCC-SSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTT
T ss_pred             --CCCCCcCCEEECCCCcC-CcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccC
Confidence              26788899999999888 466667788888999999998888666677888888999999988888666667778888


Q ss_pred             CCEEECCCCcCcceechhHhhhcccCCCeeeccCccccccceeeeccccccccccceeeeccCCCCC
Q 048333          325 LVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLT  391 (413)
Q Consensus       325 L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~  391 (413)
                      |+.|++++|.+.+... . .+..+++|++|++++|.++.++...+      ..++|+.+++++|.+.
T Consensus       150 L~~L~L~~N~l~~l~~-~-~~~~l~~L~~L~L~~N~l~~ip~~~~------~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          150 LEKLSLANNNLTELPA-G-LLNGLENLDTLLLQENSLYTIPKGFF------GSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             CCEEECTTSCCSCCCT-T-TTTTCTTCCEEECCSSCCCCCCTTTT------TTCCCSEEECCSCCBC
T ss_pred             CCEEECCCCcCCccCH-H-HhcCcCCCCEEECCCCcCCccChhhc------ccccCCeEEeCCCCcc
Confidence            8888888888874333 2 56778888888888888765543332      4457888888888775

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.86  E-value=5.3e-22  Score=182.42  Aligned_cols=256  Identities=16%  Similarity=0.120  Sum_probs=190.6

Q ss_pred             CCCcEEEcCCccCCCCcCccccCC--CCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCcccccccc
Q 048333          111 SNLKTLNLGDVSIDSTIPHNIKNL--SSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAAS  188 (413)
Q Consensus       111 ~~L~~L~l~~~~~~~~~~~~~~~~--~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~  188 (413)
                      ..+++++++++.+.   +..+..+  ++++.|+++++.+..           . +..+..+++|++|++++|.+++.   
T Consensus        47 ~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~-----------~-~~~~~~~~~L~~L~L~~~~l~~~---  108 (336)
T 2ast_B           47 SLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQ-----------P-LAEHFSPFRVQHMDLSNSVIEVS---  108 (336)
T ss_dssp             TTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECS-----------C-CCSCCCCBCCCEEECTTCEECHH---
T ss_pred             hhheeeccccccCC---HHHHHhhhhccceEEEcCCccccc-----------c-chhhccCCCCCEEEccCCCcCHH---
Confidence            45788888887765   3445555  788899998888762           2 33356788999999999887643   


Q ss_pred             ccccccccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCC-cCcc-cCCcccCCCCCCcEEEecCC-cccc
Q 048333          189 FRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFN-KLSG-EFPWSTGNFSSLKLLNLRSC-GFWS  265 (413)
Q Consensus       189 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~-~~~~~l~~~~~L~~L~l~~~-~~~~  265 (413)
                           .++..+..+++|++|++++|.+....+..+..+++|++|++++| .+++ .++..+..+++|++|++++| .+.+
T Consensus       109 -----~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~  183 (336)
T 2ast_B          109 -----TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTE  183 (336)
T ss_dssp             -----HHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCH
T ss_pred             -----HHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcCh
Confidence                 24556778889999999999887677788888999999999998 5553 25555677899999999999 7754


Q ss_pred             c-cchhhccCC-CCCeEecCCcc--cC-CcccccccCCCCCcEEEccCCc-ccccccccccCCCCCCEEECCCCcCccee
Q 048333          266 K-VPHSIGNFT-RLQFLFLGFNN--FS-GDLLGSIGNLRSLEVIYIAKCN-FSGQITSSLRNLTQLVVLDMAQNSYGGTV  339 (413)
Q Consensus       266 ~-~~~~~~~~~-~L~~L~l~~~~--~~-~~~~~~l~~~~~L~~L~L~~~~-~~~~~~~~~~~~~~L~~L~l~~n~~~~~~  339 (413)
                      . .+..+..++ +|++|++++|.  +. ...+..+..+++|+.|++++|. +++..+..+..+++|++|++++|......
T Consensus       184 ~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~  263 (336)
T 2ast_B          184 KHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPE  263 (336)
T ss_dssp             HHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGG
T ss_pred             HHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHH
Confidence            3 567788899 99999999994  44 2345566779999999999999 66677778889999999999999532222


Q ss_pred             chhHhhhcccCCCeeeccCccccccceeeeccccccccccceeeeccCCCCC-CcchHhh
Q 048333          340 ELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLT-KFPNFLE  398 (413)
Q Consensus       340 ~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~-~l~~~~~  398 (413)
                      .+. .+..+++|++|++++| +..   .....    ....++.|++++|.++ ..|..+.
T Consensus       264 ~~~-~l~~~~~L~~L~l~~~-i~~---~~~~~----l~~~l~~L~l~~n~l~~~~~~~~~  314 (336)
T 2ast_B          264 TLL-ELGEIPTLKTLQVFGI-VPD---GTLQL----LKEALPHLQINCSHFTTIARPTIG  314 (336)
T ss_dssp             GGG-GGGGCTTCCEEECTTS-SCT---TCHHH----HHHHSTTSEESCCCSCCTTCSSCS
T ss_pred             HHH-HHhcCCCCCEEeccCc-cCH---HHHHH----HHhhCcceEEecccCccccCCccc
Confidence            222 5778999999999999 322   11111    1134777889999998 4454443

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.86  E-value=2e-20  Score=167.76  Aligned_cols=204  Identities=22%  Similarity=0.245  Sum_probs=172.2

Q ss_pred             hhcCCCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCcccccc
Q 048333          107 FEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEA  186 (413)
Q Consensus       107 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~  186 (413)
                      +.+++++++++++++.++ .+|..+  .+++++|++++|.+..           ..+..+..+++|++|++++|.++.. 
T Consensus         6 ~~~l~~l~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~N~l~~-----------~~~~~~~~l~~L~~L~L~~n~l~~~-   70 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLT-ALPPDL--PKDTTILHLSENLLYT-----------FSLATLMPYTRLTQLNLDRAELTKL-   70 (290)
T ss_dssp             EECSTTCCEEECTTSCCS-SCCSCC--CTTCCEEECTTSCCSE-----------EEGGGGTTCTTCCEEECTTSCCCEE-
T ss_pred             ccccCCccEEECCCCCCC-cCCCCC--CCCCCEEEcCCCcCCc-----------cCHHHhhcCCCCCEEECCCCccCcc-
Confidence            456889999999999987 455544  3789999999999873           3456788899999999999998854 


Q ss_pred             ccccccccccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccc
Q 048333          187 ASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSK  266 (413)
Q Consensus       187 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~  266 (413)
                               +. ...+++|+.|++++|.+. .+|..+..+++|+.|++++|.++...+..+..+++|++|++++|.+...
T Consensus        71 ---------~~-~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~  139 (290)
T 1p9a_G           71 ---------QV-DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL  139 (290)
T ss_dssp             ---------EC-CSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCC
T ss_pred             ---------cC-CCCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCcc
Confidence                     22 267889999999999987 6777788899999999999999866677889999999999999998766


Q ss_pred             cchhhccCCCCCeEecCCcccCCcccccccCCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcc
Q 048333          267 VPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGG  337 (413)
Q Consensus       267 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~  337 (413)
                      .+..|..+++|+.|++++|.+.......+..+++|+.|++++|.++ .+|..+...+.|+.+++++|.+..
T Consensus       140 ~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C  209 (290)
T 1p9a_G          140 PPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC  209 (290)
T ss_dssp             CTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             ChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence            6667888999999999999998666666788999999999999998 677777788899999999998864

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.86  E-value=2.2e-22  Score=186.72  Aligned_cols=216  Identities=19%  Similarity=0.146  Sum_probs=103.0

Q ss_pred             hhhhhhcCCCCcEEEcCCccCCCCcC----ccccCCC-CCcEEEccCCcccccchhhhhhcccCCCccccCC-----CCc
Q 048333          103 FENLFEKLSNLKTLNLGDVSIDSTIP----HNIKNLS-SLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNL-----SKL  172 (413)
Q Consensus       103 i~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~-~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~-----~~L  172 (413)
                      ++..+...++|++|++++|.+.+..+    ..+..++ +|++|++++|.+..           ..+..+..+     ++|
T Consensus        14 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~-----------~~~~~l~~~l~~~~~~L   82 (362)
T 3goz_A           14 VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGF-----------KNSDELVQILAAIPANV   82 (362)
T ss_dssp             HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGG-----------SCHHHHHHHHHTSCTTC
T ss_pred             HHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCH-----------HHHHHHHHHHhccCCCc
Confidence            34444445556666666666654443    4455555 56666666666553           122222221     566


Q ss_pred             cEEECCCCccccccccccccccccccccCC-CCccEEeCCCCcCCCcchhhh----hC-CCCCCEEEccCCcCcccC---
Q 048333          173 LHLDLSLNELQGEAASFRCFGELPISMGNL-GSLKELDLSQNGFFGELPTSI----RN-LFSLEKLDLSFNKLSGEF---  243 (413)
Q Consensus       173 ~~L~l~~~~i~~~~~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~l----~~-~~~L~~L~l~~~~~~~~~---  243 (413)
                      ++|++++|.+++..+.     .+...+..+ ++|++|++++|.+....+..+    .. .++|++|++++|.+....   
T Consensus        83 ~~L~Ls~n~l~~~~~~-----~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~  157 (362)
T 3goz_A           83 TSLNLSGNFLSYKSSD-----ELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDE  157 (362)
T ss_dssp             CEEECCSSCGGGSCHH-----HHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHH
T ss_pred             cEEECcCCcCChHHHH-----HHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHH
Confidence            6666666666543211     011123333 566666666666544333222    22 235666666666554221   


Q ss_pred             -CcccCCCC-CCcEEEecCCccccccchh----hccC-CCCCeEecCCcccCCcc----cccccC-CCCCcEEEccCCcc
Q 048333          244 -PWSTGNFS-SLKLLNLRSCGFWSKVPHS----IGNF-TRLQFLFLGFNNFSGDL----LGSIGN-LRSLEVIYIAKCNF  311 (413)
Q Consensus       244 -~~~l~~~~-~L~~L~l~~~~~~~~~~~~----~~~~-~~L~~L~l~~~~~~~~~----~~~l~~-~~~L~~L~L~~~~~  311 (413)
                       +..+...+ +|++|++++|.+.+..+..    +..+ ++|++|++++|.+.+..    +..+.. .++|+.|++++|.+
T Consensus       158 l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l  237 (362)
T 3goz_A          158 LIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCL  237 (362)
T ss_dssp             HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCC
T ss_pred             HHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCC
Confidence             22222332 5566666665554333322    2223 35556666555554321    222222 23555555555555


Q ss_pred             ccccc----ccccCCCCCCEEECCCCc
Q 048333          312 SGQIT----SSLRNLTQLVVLDMAQNS  334 (413)
Q Consensus       312 ~~~~~----~~~~~~~~L~~L~l~~n~  334 (413)
                      ++..+    ..+..+++|+.|++++|.
T Consensus       238 ~~~~~~~l~~~~~~l~~L~~L~L~~n~  264 (362)
T 3goz_A          238 HGPSLENLKLLKDSLKHLQTVYLDYDI  264 (362)
T ss_dssp             CCCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred             CcHHHHHHHHHHhcCCCccEEEeccCC
Confidence            43222    223444555555555554

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.85  E-value=3.2e-22  Score=185.66  Aligned_cols=265  Identities=18%  Similarity=0.185  Sum_probs=190.8

Q ss_pred             EEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCC-CccEEECCCCccccccccccccc
Q 048333          115 TLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLS-KLLHLDLSLNELQGEAASFRCFG  193 (413)
Q Consensus       115 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~i~~~~~~~~~~~  193 (413)
                      +.+++.+.+.+.+|..+...++|++|++++|.+.+.+.       ..+...+..++ +|++|++++|.+++..+.     
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-------~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~-----   69 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSIST-------VELIQAFANTPASVTSLNLSGNSLGFKNSD-----   69 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCH-------HHHHHHHHTCCTTCCEEECCSSCGGGSCHH-----
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHH-------HHHHHHHHhCCCceeEEECcCCCCCHHHHH-----
Confidence            46788999988888877777779999999999874311       01115567788 899999999999865321     


Q ss_pred             cccccccCC-CCccEEeCCCCcCCCcchhh----hhCC-CCCCEEEccCCcCcccCCcc----cCC-CCCCcEEEecCCc
Q 048333          194 ELPISMGNL-GSLKELDLSQNGFFGELPTS----IRNL-FSLEKLDLSFNKLSGEFPWS----TGN-FSSLKLLNLRSCG  262 (413)
Q Consensus       194 ~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~----l~~~-~~L~~L~l~~~~~~~~~~~~----l~~-~~~L~~L~l~~~~  262 (413)
                      .+...+... ++|++|++++|.+....+..    +..+ ++|++|++++|.++...+..    +.. ..+|++|++++|.
T Consensus        70 ~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~  149 (362)
T 3goz_A           70 ELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGND  149 (362)
T ss_dssp             HHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSC
T ss_pred             HHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCc
Confidence            111222333 89999999999987655553    4445 89999999999987544433    334 3699999999998


Q ss_pred             ccccc----chhhccCC-CCCeEecCCcccCCcccccc----cCC-CCCcEEEccCCccccc----ccccccC-CCCCCE
Q 048333          263 FWSKV----PHSIGNFT-RLQFLFLGFNNFSGDLLGSI----GNL-RSLEVIYIAKCNFSGQ----ITSSLRN-LTQLVV  327 (413)
Q Consensus       263 ~~~~~----~~~~~~~~-~L~~L~l~~~~~~~~~~~~l----~~~-~~L~~L~L~~~~~~~~----~~~~~~~-~~~L~~  327 (413)
                      +.+..    +..+..++ +|++|++++|.+.+..+..+    ... ++|+.|++++|.+++.    ++..+.. .++|++
T Consensus       150 l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~  229 (362)
T 3goz_A          150 LGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVS  229 (362)
T ss_dssp             GGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCE
T ss_pred             CCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceE
Confidence            86433    34445555 99999999999876555433    445 5999999999999853    3444544 569999


Q ss_pred             EECCCCcCcceec--hhHhhhcccCCCeeeccCccccccceeee-cccccc-ccccceeeeccCCCCC
Q 048333          328 LDMAQNSYGGTVE--LDVLLTSWKNLEALDISLNRSSVLTKATF-DATTDT-TSQKIQYRGLRSCNLT  391 (413)
Q Consensus       328 L~l~~n~~~~~~~--~~~~~~~~~~L~~L~l~~~~i~~l~~~~~-~~~~~~-~~~~L~~L~l~~~~l~  391 (413)
                      |++++|.+.+...  +...+..+++|++|++++|.+..+.+... ...... .+++|++|++++|.+.
T Consensus       230 L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~  297 (362)
T 3goz_A          230 LNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH  297 (362)
T ss_dssp             EECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCC
T ss_pred             EECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCC
Confidence            9999999875432  12245778999999999998665544322 222223 6788999999999987

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.83  E-value=4.4e-21  Score=174.10  Aligned_cols=205  Identities=19%  Similarity=0.136  Sum_probs=103.4

Q ss_pred             CCCccEEECCCCccccccccccccccccccc--cCCCCccEEeCCCCcCCCcch----hhhhCCCCCCEEEccCCcCccc
Q 048333          169 LSKLLHLDLSLNELQGEAASFRCFGELPISM--GNLGSLKELDLSQNGFFGELP----TSIRNLFSLEKLDLSFNKLSGE  242 (413)
Q Consensus       169 ~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~----~~l~~~~~L~~L~l~~~~~~~~  242 (413)
                      +++|++|++++|.+.+.         .|..+  ..+++|++|++++|.+....+    ..+..+++|++|++++|.+...
T Consensus        90 ~~~L~~L~l~~n~l~~~---------~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~  160 (310)
T 4glp_A           90 YSRLKELTLEDLKITGT---------MPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAF  160 (310)
T ss_dssp             HSCCCEEEEESCCCBSC---------CCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCC
T ss_pred             cCceeEEEeeCCEeccc---------hhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchh
Confidence            34577777777766543         33333  556666777776666654322    2233455666666666655544


Q ss_pred             CCcccCCCCCCcEEEecCCccccc--c--chhhccCCCCCeEecCCcccCCcccccccCCCCCcEEEccCCcccccccc-
Q 048333          243 FPWSTGNFSSLKLLNLRSCGFWSK--V--PHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITS-  317 (413)
Q Consensus       243 ~~~~l~~~~~L~~L~l~~~~~~~~--~--~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~-  317 (413)
                      .+..+..+++|++|++++|.+.+.  .  +..+..+++|++|++++|.+.. .+.                     .+. 
T Consensus       161 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~---------------------~~~~  218 (310)
T 4glp_A          161 SCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTG---------------------VCAA  218 (310)
T ss_dssp             CTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHH---------------------HHHH
T ss_pred             hHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHH---------------------HHHH
Confidence            445555555566666655554221  1  1112344445555555444431 111                     011 


Q ss_pred             cccCCCCCCEEECCCCcCcceechh-HhhhcccCCCeeeccCccccccceeeeccccccccccceeeeccCCCCCCcchH
Q 048333          318 SLRNLTQLVVLDMAQNSYGGTVELD-VLLTSWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLTKFPNF  396 (413)
Q Consensus       318 ~~~~~~~L~~L~l~~n~~~~~~~~~-~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~  396 (413)
                      .+..+++|++|++++|.+.+..+.. ..+..+++|++|++++|.++.++...        .++|++|++++|+++.+|. 
T Consensus       219 l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~--------~~~L~~L~Ls~N~l~~~~~-  289 (310)
T 4glp_A          219 LAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGL--------PAKLRVLDLSSNRLNRAPQ-  289 (310)
T ss_dssp             HHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCC--------CSCCSCEECCSCCCCSCCC-
T ss_pred             HHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhh--------cCCCCEEECCCCcCCCCch-
Confidence            1234455555555555554432200 01112246666666666654332211        1456666666666665554 


Q ss_pred             hhcCCCCcEEeCCCCCC
Q 048333          397 LENQNHLVILNLSDNRI  413 (413)
Q Consensus       397 ~~~l~~L~~L~l~~n~i  413 (413)
                      +..+++|+.|++++|+|
T Consensus       290 ~~~l~~L~~L~L~~N~l  306 (310)
T 4glp_A          290 PDELPEVDNLTLDGNPF  306 (310)
T ss_dssp             TTSCCCCSCEECSSTTT
T ss_pred             hhhCCCccEEECcCCCC
Confidence            45667777777777664

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.83  E-value=3.6e-19  Score=161.18  Aligned_cols=195  Identities=21%  Similarity=0.231  Sum_probs=131.9

Q ss_pred             ccccccccceeeccccCCCCCCCCccccCcCccccCCcchhhhhhcCCCCcEEEcCCccCCCCcCccccCCCCCcEEEcc
Q 048333           64 SLFKLVHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENLFEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLR  143 (413)
Q Consensus        64 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  143 (413)
                      ....+++|++|+++++.+...  +                  .+..+++|++|++++|.+.+.. . +..+++|++|+++
T Consensus        36 ~~~~l~~L~~L~l~~~~i~~l--~------------------~~~~l~~L~~L~L~~n~i~~~~-~-~~~l~~L~~L~L~   93 (308)
T 1h6u_A           36 TQADLDGITTLSAFGTGVTTI--E------------------GVQYLNNLIGLELKDNQITDLA-P-LKNLTKITELELS   93 (308)
T ss_dssp             CHHHHHTCCEEECTTSCCCCC--T------------------TGGGCTTCCEEECCSSCCCCCG-G-GTTCCSCCEEECC
T ss_pred             cHHHcCCcCEEEeeCCCccCc--h------------------hhhccCCCCEEEccCCcCCCCh-h-HccCCCCCEEEcc
Confidence            455677777777777766532  1                  2556778888888888776433 3 7777888888888


Q ss_pred             CCcccccchhhhhhcccCCCccccCCCCccEEECCCCccccccccccccccccccccCCCCccEEeCCCCcCCCcchhhh
Q 048333          144 NCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSI  223 (413)
Q Consensus       144 ~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l  223 (413)
                      +|.+..            + ..+..+++|+.|++++|.+++.          + .+..+++|++|++++|.+... +. +
T Consensus        94 ~n~l~~------------~-~~~~~l~~L~~L~l~~n~l~~~----------~-~l~~l~~L~~L~l~~n~l~~~-~~-l  147 (308)
T 1h6u_A           94 GNPLKN------------V-SAIAGLQSIKTLDLTSTQITDV----------T-PLAGLSNLQVLYLDLNQITNI-SP-L  147 (308)
T ss_dssp             SCCCSC------------C-GGGTTCTTCCEEECTTSCCCCC----------G-GGTTCTTCCEEECCSSCCCCC-GG-G
T ss_pred             CCcCCC------------c-hhhcCCCCCCEEECCCCCCCCc----------h-hhcCCCCCCEEECCCCccCcC-cc-c
Confidence            887652            2 2466777888888888877643          2 266777788888887777533 22 6


Q ss_pred             hCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccCCCCCeEecCCcccCCcccccccCCCCCcE
Q 048333          224 RNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEV  303 (413)
Q Consensus       224 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~  303 (413)
                      ..+++|+.|++++|.+... +. +..+++|+.|++++|.+.+..+  +..+++|++|++++|.+.+..  .+..+++|+.
T Consensus       148 ~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~  221 (308)
T 1h6u_A          148 AGLTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFI  221 (308)
T ss_dssp             GGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCE
T ss_pred             cCCCCccEEEccCCcCCCC-hh-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCE
Confidence            6777777777777776632 22 6677777777777777643322  666777777777777776433  3666777777


Q ss_pred             EEccCCccc
Q 048333          304 IYIAKCNFS  312 (413)
Q Consensus       304 L~L~~~~~~  312 (413)
                      |++++|.++
T Consensus       222 L~l~~N~i~  230 (308)
T 1h6u_A          222 VTLTNQTIT  230 (308)
T ss_dssp             EEEEEEEEE
T ss_pred             EEccCCeee
Confidence            777777765

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.83  E-value=1.5e-19  Score=163.77  Aligned_cols=195  Identities=21%  Similarity=0.320  Sum_probs=139.2

Q ss_pred             hhcCCCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCcccccc
Q 048333          107 FEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEA  186 (413)
Q Consensus       107 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~  186 (413)
                      ...+++|++|++++|.+.. ++ .+..+++|++|++++|.+..            ++. +..+++|++|++++|.+++. 
T Consensus        37 ~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~------------~~~-~~~l~~L~~L~L~~n~l~~~-  100 (308)
T 1h6u_A           37 QADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITD------------LAP-LKNLTKITELELSGNPLKNV-  100 (308)
T ss_dssp             HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC------------CGG-GTTCCSCCEEECCSCCCSCC-
T ss_pred             HHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCC------------Chh-HccCCCCCEEEccCCcCCCc-
Confidence            4467888999998888864 44 47788889999999888763            333 77888889999988887743 


Q ss_pred             ccccccccccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccc
Q 048333          187 ASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSK  266 (413)
Q Consensus       187 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~  266 (413)
                                ..+..+++|++|++++|.+.. ++. +..+++|+.|++++|.+....+  +..+++|+.|++++|.+.+.
T Consensus       101 ----------~~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~  166 (308)
T 1h6u_A          101 ----------SAIAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDL  166 (308)
T ss_dssp             ----------GGGTTCTTCCEEECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC
T ss_pred             ----------hhhcCCCCCCEEECCCCCCCC-chh-hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCC
Confidence                      256778888888888888764 333 7778888888888887764322  66777778888877776432


Q ss_pred             cchhhccCCCCCeEecCCcccCCcccccccCCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcc
Q 048333          267 VPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGG  337 (413)
Q Consensus       267 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~  337 (413)
                       +. +..+++|+.|++++|.+.+..  .+..+++|+.|++++|.+++..  .+..+++|+.|++++|.+.+
T Consensus       167 -~~-l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          167 -TP-LANLSKLTTLKADDNKISDIS--PLASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             -GG-GTTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred             -hh-hcCCCCCCEEECCCCccCcCh--hhcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence             22 667777777777777776432  2566777777777777776433  25667777777777777653

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.82  E-value=3e-20  Score=168.59  Aligned_cols=204  Identities=20%  Similarity=0.165  Sum_probs=125.9

Q ss_pred             CCCcEEEccCCcccccchhhhhhcccCCCccc--cCCCCccEEECCCCccccccccccccccccccccCCCCccEEeCCC
Q 048333          135 SSLTFVSLRNCELQAMCSFFLIQISGRIPSSL--GNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQ  212 (413)
Q Consensus       135 ~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l--~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~  212 (413)
                      ++|++|++++|.+.           +..|..+  ..+++|+.|++++|.++...+.+     -...+..+++|++|++++
T Consensus        91 ~~L~~L~l~~n~l~-----------~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~-----~~~~~~~~~~L~~L~Ls~  154 (310)
T 4glp_A           91 SRLKELTLEDLKIT-----------GTMPPLPLEATGLALSSLRLRNVSWATGRSWL-----AELQQWLKPGLKVLSIAQ  154 (310)
T ss_dssp             SCCCEEEEESCCCB-----------SCCCCCSSSCCCBCCSSCEEESCCCSSTTSSH-----HHHHTTBCSCCCEEEEEC
T ss_pred             CceeEEEeeCCEec-----------cchhhhhhhccCCCCCEEEeecccccchhhhh-----HHHHhhhccCCCEEEeeC
Confidence            44555555555554           2334444  45555555555555555321100     001223456666666666


Q ss_pred             CcCCCcchhhhhCCCCCCEEEccCCcCccc----CCcccCCCCCCcEEEecCCccccccch----hhccCCCCCeEecCC
Q 048333          213 NGFFGELPTSIRNLFSLEKLDLSFNKLSGE----FPWSTGNFSSLKLLNLRSCGFWSKVPH----SIGNFTRLQFLFLGF  284 (413)
Q Consensus       213 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l~~  284 (413)
                      |.+....+..+..+++|++|++++|.+.+.    .+..+..+++|++|++++|.+. ..+.    .+..+++|++|++++
T Consensus       155 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~  233 (310)
T 4glp_A          155 AHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSH  233 (310)
T ss_dssp             CSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTT
T ss_pred             CCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCC
Confidence            666555555666666677777766664321    1222356677888888888773 2222    246778888899988


Q ss_pred             cccCCcccccccCC---CCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcceechhHhhhcccCCCeeeccCccc
Q 048333          285 NNFSGDLLGSIGNL---RSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRS  361 (413)
Q Consensus       285 ~~~~~~~~~~l~~~---~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~i  361 (413)
                      |.+.+..+..+..+   ++|+.|++++|.++ .+|..+.  ++|+.|++++|.+.+. +   .+..+++|+.|++++|++
T Consensus       234 N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~---~~~~l~~L~~L~L~~N~l  306 (310)
T 4glp_A          234 NSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-P---QPDELPEVDNLTLDGNPF  306 (310)
T ss_dssp             SCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-C---CTTSCCCCSCEECSSTTT
T ss_pred             CCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-c---hhhhCCCccEEECcCCCC
Confidence            88876555555554   68888888888887 5555543  7888888888888753 2   245678888888888885


Q ss_pred             c
Q 048333          362 S  362 (413)
Q Consensus       362 ~  362 (413)
                      +
T Consensus       307 ~  307 (310)
T 4glp_A          307 L  307 (310)
T ss_dssp             S
T ss_pred             C
Confidence            4

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.82  E-value=1.1e-19  Score=158.59  Aligned_cols=196  Identities=16%  Similarity=0.204  Sum_probs=130.4

Q ss_pred             CccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCc-CcccCCcccCCCCCCcEEEecC-CccccccchhhccCCCCCeEe
Q 048333          204 SLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNK-LSGEFPWSTGNFSSLKLLNLRS-CGFWSKVPHSIGNFTRLQFLF  281 (413)
Q Consensus       204 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~  281 (413)
                      ++++|++++|.+....+..+..+++|++|++++|. +....+..+..+++|++|++++ +.+....+..|..+++|++|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            56677777776654444456667777777777775 5544444566677777777776 666544445667777777777


Q ss_pred             cCCcccCCcccccccCCCCCc---EEEccCC-cccccccccccCCCCCC-EEECCCCcCcceechhHhhhcccCCCeeec
Q 048333          282 LGFNNFSGDLLGSIGNLRSLE---VIYIAKC-NFSGQITSSLRNLTQLV-VLDMAQNSYGGTVELDVLLTSWKNLEALDI  356 (413)
Q Consensus       282 l~~~~~~~~~~~~l~~~~~L~---~L~L~~~-~~~~~~~~~~~~~~~L~-~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l  356 (413)
                      +++|.+.. .+. +..+++|+   .|++++| .+++..+..+..+++|+ .|++++|.+. .++.. .+.. ++|++|++
T Consensus       112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~-~~~~-~~L~~L~L  186 (239)
T 2xwt_C          112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGY-AFNG-TKLDAVYL  186 (239)
T ss_dssp             EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTT-TTTT-CEEEEEEC
T ss_pred             CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHh-hcCC-CCCCEEEc
Confidence            77777764 333 66666776   8888887 77655555677778888 8888888776 44422 4444 67888888


Q ss_pred             cCcc-ccccceeeecccccccc-ccceeeeccCCCCCCcchHhhcCCCCcEEeCCCC
Q 048333          357 SLNR-SSVLTKATFDATTDTTS-QKIQYRGLRSCNLTKFPNFLENQNHLVILNLSDN  411 (413)
Q Consensus       357 ~~~~-i~~l~~~~~~~~~~~~~-~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n  411 (413)
                      ++|+ ++.++...+.     .+ ++|++|++++|.++.+|..  .+++|+.|++.++
T Consensus       187 ~~n~~l~~i~~~~~~-----~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~  236 (239)
T 2xwt_C          187 NKNKYLTVIDKDAFG-----GVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNT  236 (239)
T ss_dssp             TTCTTCCEECTTTTT-----TCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC
T ss_pred             CCCCCcccCCHHHhh-----ccccCCcEEECCCCccccCChh--HhccCceeeccCc
Confidence            8884 5543322111     34 6788888888888877764  6788888888776

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.81  E-value=7.6e-19  Score=154.29  Aligned_cols=181  Identities=19%  Similarity=0.186  Sum_probs=135.2

Q ss_pred             CCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCccccccccccccccccccccCCCCccEEeCCCCc
Q 048333          135 SSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNG  214 (413)
Q Consensus       135 ~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~  214 (413)
                      ...++++++++.++            .+|..+.  ++++.|++++|.++..         .+..+..+++|++|++++|.
T Consensus        14 ~~~~~l~~~~~~l~------------~~p~~~~--~~l~~L~L~~n~l~~~---------~~~~~~~l~~L~~L~L~~n~   70 (251)
T 3m19_A           14 EGKKEVDCQGKSLD------------SVPSGIP--ADTEKLDLQSTGLATL---------SDATFRGLTKLTWLNLDYNQ   70 (251)
T ss_dssp             GGGTEEECTTCCCS------------SCCSCCC--TTCCEEECTTSCCCCC---------CTTTTTTCTTCCEEECTTSC
T ss_pred             CCCeEEecCCCCcc------------ccCCCCC--CCCCEEEccCCCcCcc---------CHhHhcCcccCCEEECCCCc
Confidence            44677888877764            6666554  5788888888887754         33457778888888888888


Q ss_pred             CCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccCCCCCeEecCCcccCCccccc
Q 048333          215 FFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGS  294 (413)
Q Consensus       215 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  294 (413)
                      +....+..+..+++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+....+..
T Consensus        71 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  150 (251)
T 3m19_A           71 LQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGA  150 (251)
T ss_dssp             CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred             CCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHH
Confidence            87666667778888888888888887666666777888888888888776555555677888888888888877655556


Q ss_pred             ccCCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcce
Q 048333          295 IGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGT  338 (413)
Q Consensus       295 l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~  338 (413)
                      +..+++|+.|++++|.+++..+..+..+++|+.|++++|.+...
T Consensus       151 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          151 FDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             cCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence            77778888888888888766666777788888888888877644

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.81  E-value=1.8e-18  Score=151.98  Aligned_cols=180  Identities=24%  Similarity=0.244  Sum_probs=142.0

Q ss_pred             CCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCcccccccccc
Q 048333          111 SNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFR  190 (413)
Q Consensus       111 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~  190 (413)
                      ...++++++++.+. .+|..+.  +++++|++++|.+.           +..+..+.++++|++|++++|.++..     
T Consensus        14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~-----------~~~~~~~~~l~~L~~L~L~~n~l~~~-----   74 (251)
T 3m19_A           14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLA-----------TLSDATFRGLTKLTWLNLDYNQLQTL-----   74 (251)
T ss_dssp             GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCC-----------CCCTTTTTTCTTCCEEECTTSCCCCC-----
T ss_pred             CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcC-----------ccCHhHhcCcccCCEEECCCCcCCcc-----
Confidence            46778888888886 4565443  67889999988887           34456678888999999999888754     


Q ss_pred             ccccccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchh
Q 048333          191 CFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHS  270 (413)
Q Consensus       191 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~  270 (413)
                          .+..+..+++|+.|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|++++|.+.+..+..
T Consensus        75 ----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  150 (251)
T 3m19_A           75 ----SAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGA  150 (251)
T ss_dssp             ----CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred             ----CHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHH
Confidence                3455778888999999988887666677788888999999988887656666778888999999888886555556


Q ss_pred             hccCCCCCeEecCCcccCCcccccccCCCCCcEEEccCCcccc
Q 048333          271 IGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSG  313 (413)
Q Consensus       271 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~  313 (413)
                      +..+++|++|++++|.+....+..+..+++|+.|++++|.+..
T Consensus       151 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  193 (251)
T 3m19_A          151 FDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC  193 (251)
T ss_dssp             TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred             cCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence            8888889999999988886666677888889999998888864

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.81  E-value=2.3e-19  Score=156.43  Aligned_cols=200  Identities=19%  Similarity=0.203  Sum_probs=105.3

Q ss_pred             CCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCc-ccccchhhhhhcccCCCccccCCCCccEEECCC-Ccccccccc
Q 048333          111 SNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCE-LQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSL-NELQGEAAS  188 (413)
Q Consensus       111 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~-~~i~~~~~~  188 (413)
                      ++|++|++++|.+++..+..+..+++|++|++++|. ++.           ..+..+.++++|++|++++ |.++..   
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~-----------i~~~~f~~l~~L~~L~l~~~n~l~~i---   96 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQ-----------LESHSFYNLSKVTHIEIRNTRNLTYI---   96 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCE-----------ECTTTEESCTTCCEEEEEEETTCCEE---
T ss_pred             CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcce-----------eCHhHcCCCcCCcEEECCCCCCeeEc---
Confidence            367777777777765555566777777777777775 542           1223556667777777766 666532   


Q ss_pred             ccccccccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCC-cccccc
Q 048333          189 FRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSC-GFWSKV  267 (413)
Q Consensus       189 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~  267 (413)
                            .+..+..+++|++|++++|.+.. +|. +..+++|+                     .|+.|++++| .+....
T Consensus        97 ------~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~---------------------~L~~L~l~~N~~l~~i~  147 (239)
T 2xwt_C           97 ------DPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTD---------------------IFFILEITDNPYMTSIP  147 (239)
T ss_dssp             ------CTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCC---------------------SEEEEEEESCTTCCEEC
T ss_pred             ------CHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccc---------------------cccEEECCCCcchhhcC
Confidence                  12345556666666666665542 333 44444444                     0014444444 443333


Q ss_pred             chhhccCCCCC-eEecCCcccCCcccccccCCCCCcEEEccCCc-ccccccccccCC-CCCCEEECCCCcCcceechhHh
Q 048333          268 PHSIGNFTRLQ-FLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCN-FSGQITSSLRNL-TQLVVLDMAQNSYGGTVELDVL  344 (413)
Q Consensus       268 ~~~~~~~~~L~-~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~-~~~~~~~~~~~~-~~L~~L~l~~n~~~~~~~~~~~  344 (413)
                      +..|..+++|+ .|++++|.+.......+.. ++|+.|++++|. +++..+..+..+ ++|+.|++++|.+.+...    
T Consensus       148 ~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~----  222 (239)
T 2xwt_C          148 VNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPS----  222 (239)
T ss_dssp             TTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCC----
T ss_pred             cccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCCh----
Confidence            33344455555 5555555544222222222 455566665553 543334445555 566666666665553222    


Q ss_pred             hhcccCCCeeeccCc
Q 048333          345 LTSWKNLEALDISLN  359 (413)
Q Consensus       345 ~~~~~~L~~L~l~~~  359 (413)
                       ..+++|+.|+++++
T Consensus       223 -~~~~~L~~L~l~~~  236 (239)
T 2xwt_C          223 -KGLEHLKELIARNT  236 (239)
T ss_dssp             -TTCTTCSEEECTTC
T ss_pred             -hHhccCceeeccCc
Confidence             14555666666554

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.76  E-value=8.2e-18  Score=155.17  Aligned_cols=163  Identities=23%  Similarity=0.159  Sum_probs=71.0

Q ss_pred             CcCcccCCcccCCCCCCcEEEecCCccccccchhhccCCCCCeEecCCc-ccCCcccccccCC-CCCcEEEccCCccccc
Q 048333          237 NKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFN-NFSGDLLGSIGNL-RSLEVIYIAKCNFSGQ  314 (413)
Q Consensus       237 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~~-~~L~~L~L~~~~~~~~  314 (413)
                      |.+....+..+..+++|++|++++|.+....+..+....++..+++.++ .+.......+..+ ..++.|++++|+++ .
T Consensus        90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~  168 (350)
T 4ay9_X           90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-E  168 (350)
T ss_dssp             TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-E
T ss_pred             CcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-C
Confidence            3333333334444444444444444443322223333334444444332 2222222223332 24555556555555 2


Q ss_pred             ccccccCCCCCCEEECCCCcCcceechhHhhhcccCCCeeeccCccccccceeeeccccccccccceeeeccCC-CCCCc
Q 048333          315 ITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSC-NLTKF  393 (413)
Q Consensus       315 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~L~~L~l~~~-~l~~l  393 (413)
                      ++.......+|+.+++.++...+.++.. .+.++++|++|++++|.++.++...        +..|+.|.+.++ .+..+
T Consensus       169 i~~~~f~~~~L~~l~l~~~n~l~~i~~~-~f~~l~~L~~LdLs~N~l~~lp~~~--------~~~L~~L~~l~~~~l~~l  239 (350)
T 4ay9_X          169 IHNSAFNGTQLDELNLSDNNNLEELPND-VFHGASGPVILDISRTRIHSLPSYG--------LENLKKLRARSTYNLKKL  239 (350)
T ss_dssp             ECTTSSTTEEEEEEECTTCTTCCCCCTT-TTTTEECCSEEECTTSCCCCCCSSS--------CTTCCEEECTTCTTCCCC
T ss_pred             CChhhccccchhHHhhccCCcccCCCHH-HhccCcccchhhcCCCCcCccChhh--------hccchHhhhccCCCcCcC
Confidence            3333333445566666543333333312 4555666666666666655443221        223444444333 23355


Q ss_pred             chHhhcCCCCcEEeCCC
Q 048333          394 PNFLENQNHLVILNLSD  410 (413)
Q Consensus       394 ~~~~~~l~~L~~L~l~~  410 (413)
                      |. +.++++|+.+++.+
T Consensus       240 P~-l~~l~~L~~l~l~~  255 (350)
T 4ay9_X          240 PT-LEKLVALMEASLTY  255 (350)
T ss_dssp             CC-TTTCCSCCEEECSC
T ss_pred             CC-chhCcChhhCcCCC
Confidence            52 45566666666543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.74  E-value=1e-16  Score=143.71  Aligned_cols=106  Identities=27%  Similarity=0.380  Sum_probs=46.5

Q ss_pred             ccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccCCCCC
Q 048333          199 MGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQ  278 (413)
Q Consensus       199 ~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  278 (413)
                      +..+++|++|++++|.+.. + ..+..+++|+.|++++|.+...  ..+..+++|+.|++++|.+.+..+  +..+++|+
T Consensus       108 l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~  181 (291)
T 1h6t_A          108 LKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQ  181 (291)
T ss_dssp             GTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCC
T ss_pred             hccCCCCCEEECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccC
Confidence            3344444444444444432 1 2234444444444444444322  233444444555554444432222  44445555


Q ss_pred             eEecCCcccCCcccccccCCCCCcEEEccCCccc
Q 048333          279 FLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFS  312 (413)
Q Consensus       279 ~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~  312 (413)
                      .|++++|.+.+.  ..+..+++|+.|++++|.++
T Consensus       182 ~L~L~~N~i~~l--~~l~~l~~L~~L~l~~n~i~  213 (291)
T 1h6t_A          182 NLYLSKNHISDL--RALAGLKNLDVLELFSQECL  213 (291)
T ss_dssp             EEECCSSCCCBC--GGGTTCTTCSEEEEEEEEEE
T ss_pred             EEECCCCcCCCC--hhhccCCCCCEEECcCCccc
Confidence            555555544421  22444555555555555544

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.72  E-value=6.9e-17  Score=144.85  Aligned_cols=170  Identities=24%  Similarity=0.296  Sum_probs=104.1

Q ss_pred             CCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCccccccccccccccccccccCCCCccEEeCCC
Q 048333          133 NLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQ  212 (413)
Q Consensus       133 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~  212 (413)
                      .+++|++|++++|.+..            + ..+..+++|+.|++++|.+++.          +. +..+++|+.|++++
T Consensus        44 ~l~~L~~L~l~~~~i~~------------~-~~~~~l~~L~~L~L~~n~l~~~----------~~-l~~l~~L~~L~l~~   99 (291)
T 1h6t_A           44 ELNSIDQIIANNSDIKS------------V-QGIQYLPNVTKLFLNGNKLTDI----------KP-LANLKNLGWLFLDE   99 (291)
T ss_dssp             HHHTCCEEECTTSCCCC------------C-TTGGGCTTCCEEECCSSCCCCC----------GG-GTTCTTCCEEECCS
T ss_pred             hcCcccEEEccCCCccc------------C-hhHhcCCCCCEEEccCCccCCC----------cc-cccCCCCCEEECCC
Confidence            44555555555555442            1 1244555666666666655532          22 55556666666666


Q ss_pred             CcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccCCCCCeEecCCcccCCccc
Q 048333          213 NGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLL  292 (413)
Q Consensus       213 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  292 (413)
                      |.+.. + ..+..+++|+.|++++|.+...  ..+..+++|+.|++++|.+.+.  ..+..+++|+.|++++|.+.+..+
T Consensus       100 n~l~~-~-~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~  173 (291)
T 1h6t_A          100 NKVKD-L-SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP  173 (291)
T ss_dssp             SCCCC-G-GGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG
T ss_pred             CcCCC-C-hhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh
Confidence            66542 2 2366777777777777776532  3456667777777777776433  456677777777777777764332


Q ss_pred             ccccCCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCc
Q 048333          293 GSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYG  336 (413)
Q Consensus       293 ~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~  336 (413)
                        +..+++|+.|++++|.+++ ++ .+..+++|+.|++++|.+.
T Consensus       174 --l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~  213 (291)
T 1h6t_A          174 --LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECL  213 (291)
T ss_dssp             --GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEE
T ss_pred             --hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCccc
Confidence              6667777777777777763 33 3666777777777777665

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.72  E-value=1.1e-16  Score=136.39  Aligned_cols=179  Identities=22%  Similarity=0.198  Sum_probs=94.8

Q ss_pred             cEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCccccccccccccc
Q 048333          114 KTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFG  193 (413)
Q Consensus       114 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~  193 (413)
                      +.++.+++.+. .+|..+  .++|++|++++|.+..           ..+..+..+++|++|++++|.++..        
T Consensus        10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~-----------~~~~~~~~l~~L~~L~l~~n~l~~~--------   67 (208)
T 2o6s_A           10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKS-----------LPNGVFDELTSLTQLYLGGNKLQSL--------   67 (208)
T ss_dssp             TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCC-----------CCTTTTTTCTTCSEEECCSSCCCCC--------
T ss_pred             CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCc-----------CChhhhcccccCcEEECCCCccCcc--------
Confidence            34455555544 233222  3456666666666542           2223345566666666666665532        


Q ss_pred             cccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhcc
Q 048333          194 ELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGN  273 (413)
Q Consensus       194 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~  273 (413)
                       .+..+..+++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+.+..+..+..
T Consensus        68 -~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~  146 (208)
T 2o6s_A           68 -PNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDR  146 (208)
T ss_dssp             -CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred             -ChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhcc
Confidence             1223455566666666666655443444555666666666666555444444555566666666666554433344555


Q ss_pred             CCCCCeEecCCcccCCcccccccCCCCCcEEEccCCcccccccccccCC
Q 048333          274 FTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNL  322 (413)
Q Consensus       274 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~  322 (413)
                      +++|++|++++|.+.       +.++.|+.|.++.|.+++.+|..+..+
T Consensus       147 l~~L~~L~l~~N~~~-------~~~~~l~~L~~~~n~~~g~ip~~~~~l  188 (208)
T 2o6s_A          147 LTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVRNSAGSV  188 (208)
T ss_dssp             CTTCCEEECCSCCBC-------CCTTTTHHHHHHHHHCTTTBBCTTSSB
T ss_pred             CCCccEEEecCCCee-------cCCCCHHHHHHHHHhCCceeeccCccc
Confidence            566666666665443       234455566666666655555544433

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.72  E-value=1e-16  Score=157.43  Aligned_cols=175  Identities=23%  Similarity=0.269  Sum_probs=122.3

Q ss_pred             ccccccccceeeccccCCCCCCCCccccCcCccccCCcchhhhhhcCCCCcEEEcCCccCCCCcCccccCCCCCcEEEcc
Q 048333           64 SLFKLVHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENLFEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLR  143 (413)
Q Consensus        64 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  143 (413)
                      .+..+++|+.|++++|.+...  +                  .+..+++|++|+|++|.+.+..+  +..+++|++|+++
T Consensus        38 ~~~~L~~L~~L~l~~n~i~~l--~------------------~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls   95 (605)
T 1m9s_A           38 TQNELNSIDQIIANNSDIKSV--Q------------------GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLD   95 (605)
T ss_dssp             CHHHHTTCCCCBCTTCCCCCC--T------------------TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECC
T ss_pred             chhcCCCCCEEECcCCCCCCC--h------------------HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECc
Confidence            355677777777777765532  1                  25567888888888887765433  7778888888888


Q ss_pred             CCcccccchhhhhhcccCCCccccCCCCccEEECCCCccccccccccccccccccccCCCCccEEeCCCCcCCCcchhhh
Q 048333          144 NCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSI  223 (413)
Q Consensus       144 ~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l  223 (413)
                      +|.+..            + ..+..+++|+.|++++|.+.+.           ..+..+++|+.|++++|.+...  ..+
T Consensus        96 ~N~l~~------------l-~~l~~l~~L~~L~Ls~N~l~~l-----------~~l~~l~~L~~L~Ls~N~l~~l--~~l  149 (605)
T 1m9s_A           96 ENKIKD------------L-SSLKDLKKLKSLSLEHNGISDI-----------NGLVHLPQLESLYLGNNKITDI--TVL  149 (605)
T ss_dssp             SSCCCC------------C-TTSTTCTTCCEEECTTSCCCCC-----------GGGGGCTTCSEEECCSSCCCCC--GGG
T ss_pred             CCCCCC------------C-hhhccCCCCCEEEecCCCCCCC-----------ccccCCCccCEEECCCCccCCc--hhh
Confidence            887752            2 2567778888888888877642           3466777888888888877643  557


Q ss_pred             hCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccCCCCCeEecCCcccCCc
Q 048333          224 RNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGD  290 (413)
Q Consensus       224 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  290 (413)
                      ..+++|+.|++++|.+....+  +..+++|+.|++++|.+.+ + ..+..+++|+.|++++|.+...
T Consensus       150 ~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~-l-~~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          150 SRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-L-RALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             GSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-C-GGGTTCTTCSEEECCSEEEECC
T ss_pred             cccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC-C-hHHccCCCCCEEEccCCcCcCC
Confidence            777888888888887764444  6777788888888877744 2 3467777888888887776643

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.72  E-value=4.4e-17  Score=158.28  Aligned_cols=206  Identities=23%  Similarity=0.276  Sum_probs=140.8

Q ss_pred             CCCCCCCCCCCCCc-----ccceE-EeeCCCCceEEEecCCCccccccCCccccccccccceeeccccCCCCCCCCcccc
Q 048333           18 MASWKPEEGSVDCY-----SWDVV-HCNKNTGHVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPPEII   91 (413)
Q Consensus        18 ~~~~~~~~~~~~~~-----~~~~~-~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~   91 (413)
                      +..|..   ..+.|     .|.++ .|..  ++++.|+++++.+.+ ++.  .+  +++|++|++++|.+..  +|    
T Consensus        33 l~~W~~---~~~~~~~~~~~~~~l~~C~~--~~L~~L~Ls~n~L~~-lp~--~l--~~~L~~L~Ls~N~l~~--ip----   96 (571)
T 3cvr_A           33 WDKWEK---QALPGENRNEAVSLLKECLI--NQFSELQLNRLNLSS-LPD--NL--PPQITVLEITQNALIS--LP----   96 (571)
T ss_dssp             HHHHHT---TCCTTCCHHHHHHHHHHHHH--TTCSEEECCSSCCSC-CCS--CC--CTTCSEEECCSSCCSC--CC----
T ss_pred             HHHHhc---cCCccccccchhhhcccccc--CCccEEEeCCCCCCc-cCH--hH--cCCCCEEECcCCCCcc--cc----
Confidence            455755   44555     68888 6752  589999999998875 444  34  3789999999998873  33    


Q ss_pred             CcCccccCCcchhhhhhcCCCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCC
Q 048333           92 NLSRLELQKPSFENLFEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSK  171 (413)
Q Consensus        92 ~L~~L~l~~~~i~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~  171 (413)
                                      ..+++|++|++++|.+++ +|. +..  +|++|++++|.++            .+|.   .+++
T Consensus        97 ----------------~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~------------~lp~---~l~~  141 (571)
T 3cvr_A           97 ----------------ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLT------------MLPE---LPAL  141 (571)
T ss_dssp             ----------------CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCS------------CCCC---CCTT
T ss_pred             ----------------cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCC------------CCCC---cCcc
Confidence                            126788888888888875 665 544  8888888888876            2444   5678


Q ss_pred             ccEEECCCCccccccccccccccccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCC
Q 048333          172 LLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFS  251 (413)
Q Consensus       172 L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~  251 (413)
                      |+.|++++|.++.          +|.   .+++|+.|++++|.+.. +|. +.  ++|+.|++++|.++ .+|. +..  
T Consensus       142 L~~L~Ls~N~l~~----------lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--  200 (571)
T 3cvr_A          142 LEYINADNNQLTM----------LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--  200 (571)
T ss_dssp             CCEEECCSSCCSC----------CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC---
T ss_pred             ccEEeCCCCccCc----------CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--
Confidence            8888888888774          333   45778888888888764 555 44  77888888888776 4454 332  


Q ss_pred             CC-------cEEEecCCccccccchhhccCCCCCeEecCCcccCCccccccc
Q 048333          252 SL-------KLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIG  296 (413)
Q Consensus       252 ~L-------~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~  296 (413)
                      +|       +.|++++|.+. .+|..+..+++|+.|++++|.+.+..+..+.
T Consensus       201 ~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~  251 (571)
T 3cvr_A          201 RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLS  251 (571)
T ss_dssp             -------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHH
T ss_pred             hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHH
Confidence            55       77777777663 4555555677777777777766654444443

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.72  E-value=2.6e-16  Score=133.98  Aligned_cols=149  Identities=21%  Similarity=0.181  Sum_probs=90.9

Q ss_pred             CCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccCCCCCeEec
Q 048333          203 GSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFL  282 (413)
Q Consensus       203 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  282 (413)
                      +++++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  107 (208)
T 2o6s_A           28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL  107 (208)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence            35666666666655444444556666666666666665444444556666666666666664444444566666777777


Q ss_pred             CCcccCCcccccccCCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcceechhHhhhcccCCCeeeccCcc
Q 048333          283 GFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNR  360 (413)
Q Consensus       283 ~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~  360 (413)
                      ++|.+....+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.         ..++.|++|+++.|.
T Consensus       108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~---------~~~~~l~~L~~~~n~  176 (208)
T 2o6s_A          108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD---------CTCPGIRYLSEWINK  176 (208)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC---------CCTTTTHHHHHHHHH
T ss_pred             CCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee---------cCCCCHHHHHHHHHh
Confidence            766666544445566677777777777766544455666777777777777544         234566777777666

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.71  E-value=7.7e-17  Score=135.96  Aligned_cols=150  Identities=16%  Similarity=0.210  Sum_probs=93.6

Q ss_pred             CCCCcEEEecCCccccccchhhccCCCCCeEecCCcccCCcccccccCCCCCcEEEccCCcccccccccccCCCCCCEEE
Q 048333          250 FSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLD  329 (413)
Q Consensus       250 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~  329 (413)
                      +++|+.|+++++.+. .++ .+..+++|++|++++|.+..  +..+..+++|+.|++++|.+++..+..+..+++|++|+
T Consensus        43 l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  118 (197)
T 4ezg_A           43 MNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD  118 (197)
T ss_dssp             HHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred             cCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence            445556666655553 333 35556666666666665442  23556667777777777777655566666777777777


Q ss_pred             CCCCcCcceechhHhhhcccCCCeeeccCcc-ccccceeeeccccccccccceeeeccCCCCCCcchHhhcCCCCcEEeC
Q 048333          330 MAQNSYGGTVELDVLLTSWKNLEALDISLNR-SSVLTKATFDATTDTTSQKIQYRGLRSCNLTKFPNFLENQNHLVILNL  408 (413)
Q Consensus       330 l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~-i~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l  408 (413)
                      +++|.+.+..+ . .+..+++|++|++++|. ++.++       ....+++|++|++++|.++.++ .+..+++|+.|++
T Consensus       119 Ls~n~i~~~~~-~-~l~~l~~L~~L~L~~n~~i~~~~-------~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l  188 (197)
T 4ezg_A          119 ISHSAHDDSIL-T-KINTLPKVNSIDLSYNGAITDIM-------PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYA  188 (197)
T ss_dssp             CCSSBCBGGGH-H-HHTTCSSCCEEECCSCTBCCCCG-------GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEE
T ss_pred             ecCCccCcHhH-H-HHhhCCCCCEEEccCCCCccccH-------hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEe
Confidence            77777664333 2 56677777777777776 44432       1115667777777777777666 6677778888888


Q ss_pred             CCCCC
Q 048333          409 SDNRI  413 (413)
Q Consensus       409 ~~n~i  413 (413)
                      ++|+|
T Consensus       189 ~~N~i  193 (197)
T 4ezg_A          189 FSQTI  193 (197)
T ss_dssp             CBC--
T ss_pred             eCccc
Confidence            77765

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.71  E-value=9.1e-17  Score=157.76  Aligned_cols=175  Identities=26%  Similarity=0.342  Sum_probs=146.3

Q ss_pred             hhcCCCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCcccccc
Q 048333          107 FEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEA  186 (413)
Q Consensus       107 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~  186 (413)
                      +..+++|++|++++|.+.. ++ .+..+++|++|++++|.+..            ++. +..+++|+.|++++|.+.+. 
T Consensus        39 ~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~------------~~~-l~~l~~L~~L~Ls~N~l~~l-  102 (605)
T 1m9s_A           39 QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTD------------IKP-LTNLKNLGWLFLDENKIKDL-  102 (605)
T ss_dssp             HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCC------------CGG-GGGCTTCCEEECCSSCCCCC-
T ss_pred             hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCC------------Chh-hccCCCCCEEECcCCCCCCC-
Confidence            4568999999999999874 44 48889999999999999873            333 78899999999999998743 


Q ss_pred             ccccccccccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccc
Q 048333          187 ASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSK  266 (413)
Q Consensus       187 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~  266 (413)
                                ..+..+++|+.|++++|.+.. + ..+..+++|+.|++++|.+...  ..+..+++|+.|++++|.+.+.
T Consensus       103 ----------~~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~  168 (605)
T 1m9s_A          103 ----------SSLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI  168 (605)
T ss_dssp             ----------TTSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCC
T ss_pred             ----------hhhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCc
Confidence                      367889999999999999874 3 4588999999999999998754  5678899999999999988655


Q ss_pred             cchhhccCCCCCeEecCCcccCCcccccccCCCCCcEEEccCCcccccc
Q 048333          267 VPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQI  315 (413)
Q Consensus       267 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~  315 (413)
                      .+  +..+++|+.|++++|.+.+.  ..+..+++|+.|++++|.+.+..
T Consensus       169 ~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~p  213 (605)
T 1m9s_A          169 VP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKP  213 (605)
T ss_dssp             GG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECCC
T ss_pred             hh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCCc
Confidence            45  88899999999999998753  46888999999999999887543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.71  E-value=3.3e-16  Score=152.16  Aligned_cols=182  Identities=22%  Similarity=0.289  Sum_probs=145.3

Q ss_pred             CCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCcccccccccc
Q 048333          111 SNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFR  190 (413)
Q Consensus       111 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~  190 (413)
                      .+|++|++++|.+.+ +|..+  +++|++|++++|.++            .+|   ..+++|+.|++++|.++.      
T Consensus        59 ~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~------------~ip---~~l~~L~~L~Ls~N~l~~------  114 (571)
T 3cvr_A           59 NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI------------SLP---ELPASLEYLDACDNRLST------  114 (571)
T ss_dssp             TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS------------CCC---CCCTTCCEEECCSSCCSC------
T ss_pred             CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc------------ccc---cccCCCCEEEccCCCCCC------
Confidence            489999999999986 66655  488999999999986            345   446899999999999885      


Q ss_pred             ccccccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchh
Q 048333          191 CFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHS  270 (413)
Q Consensus       191 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~  270 (413)
                          +|. +..  +|+.|++++|.+.. +|.   .+++|+.|++++|.++. +|.   .+++|+.|++++|.+.+ +|. 
T Consensus       115 ----ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-  177 (571)
T 3cvr_A          115 ----LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-  177 (571)
T ss_dssp             ----CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-
T ss_pred             ----cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-
Confidence                344 433  89999999999875 555   67899999999999874 554   56899999999998855 555 


Q ss_pred             hccCCCCCeEecCCcccCCcccccccCCCCC-------cEEEccCCcccccccccccCCCCCCEEECCCCcCcceec
Q 048333          271 IGNFTRLQFLFLGFNNFSGDLLGSIGNLRSL-------EVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVE  340 (413)
Q Consensus       271 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L-------~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~  340 (413)
                      +.  ++|+.|++++|.+. .++. +..  +|       +.|++++|.++ .+|..+..+++|+.|++++|.+.+..+
T Consensus       178 l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p  247 (571)
T 3cvr_A          178 LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIR  247 (571)
T ss_dssp             CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHH
T ss_pred             hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCH
Confidence            54  89999999999988 4444 443  66       99999999998 577777779999999999999986555

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.70  E-value=2.2e-16  Score=145.53  Aligned_cols=221  Identities=17%  Similarity=0.066  Sum_probs=122.5

Q ss_pred             CCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCC-ccccCCCCccE-EECCCCcccccccc
Q 048333          111 SNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIP-SSLGNLSKLLH-LDLSLNELQGEAAS  188 (413)
Q Consensus       111 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~-~~l~~~~~L~~-L~l~~~~i~~~~~~  188 (413)
                      +++++|++++|.++...+.+|.++++|++|++++|.+..           .++ ..|.++++++. +.+.+|.++..   
T Consensus        30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~-----------~i~~~~f~~L~~l~~~l~~~~N~l~~l---   95 (350)
T 4ay9_X           30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE-----------VIEADVFSNLPKLHEIRIEKANNLLYI---   95 (350)
T ss_dssp             TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCC-----------EECTTSBCSCTTCCEEEEEEETTCCEE---
T ss_pred             CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCC-----------ccChhHhhcchhhhhhhcccCCccccc---
Confidence            567777777777764444456777777777777776542           222 34556666554 34455666543   


Q ss_pred             ccccccccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCC-cCcccCCcccCCC-CCCcEEEecCCccccc
Q 048333          189 FRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFN-KLSGEFPWSTGNF-SSLKLLNLRSCGFWSK  266 (413)
Q Consensus       189 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~  266 (413)
                            .|..+..+++|+.|++++|.+....+..+....++..+++.++ .+....+..+..+ ..++.|++++|.+. .
T Consensus        96 ------~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~  168 (350)
T 4ay9_X           96 ------NPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-E  168 (350)
T ss_dssp             ------CTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-E
T ss_pred             ------CchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-C
Confidence                  2345666777777777777665443334444555666666443 3332333334333 34666777777663 3


Q ss_pred             cchhhccCCCCCeEecCC-cccCCcccccccCCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcceechhHhh
Q 048333          267 VPHSIGNFTRLQFLFLGF-NNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLL  345 (413)
Q Consensus       267 ~~~~~~~~~~L~~L~l~~-~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~  345 (413)
                      ++.......+|+.+++.+ |.+......+|..+++|+.|++++|+++...+..   +.+|+.|.+.++......+   .+
T Consensus       169 i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP---~l  242 (350)
T 4ay9_X          169 IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLP---TL  242 (350)
T ss_dssp             ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCC---CT
T ss_pred             CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCC---Cc
Confidence            333333445666776664 3444333345566677777777777766332222   3445555554443333444   35


Q ss_pred             hcccCCCeeeccC
Q 048333          346 TSWKNLEALDISL  358 (413)
Q Consensus       346 ~~~~~L~~L~l~~  358 (413)
                      ..+++|+.+++++
T Consensus       243 ~~l~~L~~l~l~~  255 (350)
T 4ay9_X          243 EKLVALMEASLTY  255 (350)
T ss_dssp             TTCCSCCEEECSC
T ss_pred             hhCcChhhCcCCC
Confidence            5666677777654

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.70  E-value=4.8e-16  Score=134.28  Aligned_cols=158  Identities=25%  Similarity=0.240  Sum_probs=107.1

Q ss_pred             CCCCcccceEEeeCCCCceEEEecCCCccccccCCccccccccccceeeccccCCCCCCCCccccCcCccccCCcchhhh
Q 048333           27 SVDCYSWDVVHCNKNTGHVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENL  106 (413)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~  106 (413)
                      ....|.|.+|.|...            .+. .++.  .+  .++|++|++++|.+... .                 +..
T Consensus        15 ~~~~Cs~~~v~c~~~------------~l~-~ip~--~~--~~~L~~L~Ls~n~i~~~-~-----------------~~~   59 (229)
T 3e6j_A           15 SQCSCSGTTVDCRSK------------RHA-SVPA--GI--PTNAQILYLHDNQITKL-E-----------------PGV   59 (229)
T ss_dssp             TTCEEETTEEECTTS------------CCS-SCCS--CC--CTTCSEEECCSSCCCCC-C-----------------TTT
T ss_pred             CCCEEeCCEeEccCC------------CcC-ccCC--CC--CCCCCEEEcCCCccCcc-C-----------------HHH
Confidence            788999999999531            121 2222  22  27788888888877653 1                 224


Q ss_pred             hhcCCCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCcccccc
Q 048333          107 FEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEA  186 (413)
Q Consensus       107 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~  186 (413)
                      +..+++|++|++++|.+....+..+..+++|++|++++|.++.           ..+..+..+++|+.|++++|.++.  
T Consensus        60 ~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~-----------l~~~~~~~l~~L~~L~Ls~N~l~~--  126 (229)
T 3e6j_A           60 FDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV-----------LPSAVFDRLVHLKELFMCCNKLTE--  126 (229)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-----------CCTTTTTTCTTCCEEECCSSCCCS--
T ss_pred             hhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCc-----------cChhHhCcchhhCeEeccCCcccc--
Confidence            5667888888888888865555667778888888888887762           233446677788888888887762  


Q ss_pred             ccccccccccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCc
Q 048333          187 ASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLS  240 (413)
Q Consensus       187 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  240 (413)
                              +|..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+.
T Consensus       127 --------lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A          127 --------LPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             --------CCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred             --------cCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence                    4556667777777777777776444455666667777777666554

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.67  E-value=4e-16  Score=131.54  Aligned_cols=86  Identities=16%  Similarity=0.233  Sum_probs=36.6

Q ss_pred             ccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccCCCCC
Q 048333          199 MGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQ  278 (413)
Q Consensus       199 ~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  278 (413)
                      +..+++|++|++++|.+. . +..+..+++|++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|+
T Consensus        62 l~~l~~L~~L~l~~n~~~-~-~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~  139 (197)
T 4ezg_A           62 IEYAHNIKDLTINNIHAT-N-YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVN  139 (197)
T ss_dssp             GGGCTTCSEEEEESCCCS-C-CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCC
T ss_pred             HhcCCCCCEEEccCCCCC-c-chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCC
Confidence            334444444444444332 1 12344444444444444444333333344444444444444444333333444444444


Q ss_pred             eEecCCcc
Q 048333          279 FLFLGFNN  286 (413)
Q Consensus       279 ~L~l~~~~  286 (413)
                      +|++++|.
T Consensus       140 ~L~L~~n~  147 (197)
T 4ezg_A          140 SIDLSYNG  147 (197)
T ss_dssp             EEECCSCT
T ss_pred             EEEccCCC
Confidence            44444443

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.67  E-value=1.3e-15  Score=130.56  Aligned_cols=135  Identities=20%  Similarity=0.221  Sum_probs=86.1

Q ss_pred             CCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccCCCCCeEec
Q 048333          203 GSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFL  282 (413)
Q Consensus       203 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  282 (413)
                      ++++.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|++|++++|.+....+..|..+++|++|++
T Consensus        32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L  111 (220)
T 2v9t_B           32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL  111 (220)
T ss_dssp             TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence            35556666666555333445555666666666666665455556666666666666666664444444566677777777


Q ss_pred             CCcccCCcccccccCCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcc
Q 048333          283 GFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGG  337 (413)
Q Consensus       283 ~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~  337 (413)
                      ++|.+....+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+..
T Consensus       112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B          112 NANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             CCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence            7777665556666677777777777777765555566677777777777777654

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.66  E-value=1.4e-15  Score=140.81  Aligned_cols=178  Identities=23%  Similarity=0.174  Sum_probs=133.9

Q ss_pred             CcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCcccccccccccccccccccc-CCCCccEEeCCCCcC
Q 048333          137 LTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMG-NLGSLKELDLSQNGF  215 (413)
Q Consensus       137 L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~  215 (413)
                      -++++++++.++            .+|..+.  +.++.|++++|.++..         .+..+. .+++|+.|++++|.+
T Consensus        20 ~~~l~c~~~~l~------------~iP~~~~--~~l~~L~Ls~N~l~~l---------~~~~~~~~l~~L~~L~L~~N~i   76 (361)
T 2xot_A           20 SNILSCSKQQLP------------NVPQSLP--SYTALLDLSHNNLSRL---------RAEWTPTRLTNLHSLLLSHNHL   76 (361)
T ss_dssp             TTEEECCSSCCS------------SCCSSCC--TTCSEEECCSSCCCEE---------CTTSSSSCCTTCCEEECCSSCC
T ss_pred             CCEEEeCCCCcC------------ccCccCC--CCCCEEECCCCCCCcc---------ChhhhhhcccccCEEECCCCcC
Confidence            367888888775            6776554  4688899999988754         233455 788899999999888


Q ss_pred             CCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccCCCCCeEecCCcccCCcccccc
Q 048333          216 FGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSI  295 (413)
Q Consensus       216 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l  295 (413)
                      ....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+....+..|..+++|+.|++++|.+.......+
T Consensus        77 ~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~  156 (361)
T 2xot_A           77 NFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELI  156 (361)
T ss_dssp             CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGT
T ss_pred             CccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHh
Confidence            76666778888889999998888876666677888888888888888866667778888888888888888875444444


Q ss_pred             ---cCCCCCcEEEccCCcccccccccccCCCC--CCEEECCCCcCcc
Q 048333          296 ---GNLRSLEVIYIAKCNFSGQITSSLRNLTQ--LVVLDMAQNSYGG  337 (413)
Q Consensus       296 ---~~~~~L~~L~L~~~~~~~~~~~~~~~~~~--L~~L~l~~n~~~~  337 (413)
                         ..+++|+.|++++|.++...+..+..++.  ++.|++++|.+..
T Consensus       157 ~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C  203 (361)
T 2xot_A          157 KDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLEC  203 (361)
T ss_dssp             C----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred             cCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccC
Confidence               45788888888888887555556666666  4778888887764

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.66  E-value=3e-15  Score=128.41  Aligned_cols=137  Identities=18%  Similarity=0.143  Sum_probs=98.9

Q ss_pred             CccEEeCCCCcCCCcch-hhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccCCCCCeEec
Q 048333          204 SLKELDLSQNGFFGELP-TSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFL  282 (413)
Q Consensus       204 ~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  282 (413)
                      .+++|++++|.+....+ ..+..+++|+.|++++|.+....+..+..+++|++|++++|.+.+..+..|..+++|++|++
T Consensus        33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  112 (220)
T 2v70_A           33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLML  112 (220)
T ss_dssp             TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEEC
T ss_pred             CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEEC
Confidence            34566666666653322 34566777777777777766555556777777777777777776666666777888888888


Q ss_pred             CCcccCCcccccccCCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcceec
Q 048333          283 GFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVE  340 (413)
Q Consensus       283 ~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~  340 (413)
                      ++|.+....+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.....
T Consensus       113 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  170 (220)
T 2v70_A          113 RSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY  170 (220)
T ss_dssp             TTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred             CCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence            8888776666777778888888888888876667778888888888888888775544

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.66  E-value=2.6e-15  Score=128.71  Aligned_cols=114  Identities=24%  Similarity=0.226  Sum_probs=60.8

Q ss_pred             ccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccCCCCC
Q 048333          199 MGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQ  278 (413)
Q Consensus       199 ~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  278 (413)
                      +..+++|+.|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|++++|.+.+..+..|..+++|+
T Consensus        52 ~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  131 (220)
T 2v9t_B           52 FSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLN  131 (220)
T ss_dssp             STTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             hhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCC
Confidence            44444455555555544433344455555555555555555433333344555555555555555444445555566666


Q ss_pred             eEecCCcccCCcccccccCCCCCcEEEccCCccc
Q 048333          279 FLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFS  312 (413)
Q Consensus       279 ~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~  312 (413)
                      +|++++|.+....+..+..+++|+.|++++|.+.
T Consensus       132 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B          132 LLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             EEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence            6666666655444445555666666666666554

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.65  E-value=1.3e-15  Score=140.98  Aligned_cols=176  Identities=20%  Similarity=0.146  Sum_probs=142.0

Q ss_pred             cEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCcccc-CCCCccEEECCCCcccccccccccc
Q 048333          114 KTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLG-NLSKLLHLDLSLNELQGEAASFRCF  192 (413)
Q Consensus       114 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~i~~~~~~~~~~  192 (413)
                      +.++.+++.+. .+|..+  .+.++.|++++|.++.           ..+..+. ++++|+.|++++|.++..       
T Consensus        21 ~~l~c~~~~l~-~iP~~~--~~~l~~L~Ls~N~l~~-----------l~~~~~~~~l~~L~~L~L~~N~i~~i-------   79 (361)
T 2xot_A           21 NILSCSKQQLP-NVPQSL--PSYTALLDLSHNNLSR-----------LRAEWTPTRLTNLHSLLLSHNHLNFI-------   79 (361)
T ss_dssp             TEEECCSSCCS-SCCSSC--CTTCSEEECCSSCCCE-----------ECTTSSSSCCTTCCEEECCSSCCCEE-------
T ss_pred             CEEEeCCCCcC-ccCccC--CCCCCEEECCCCCCCc-----------cChhhhhhcccccCEEECCCCcCCcc-------
Confidence            68899999887 466544  3569999999999874           2344565 889999999999999864       


Q ss_pred             ccccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhh-
Q 048333          193 GELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSI-  271 (413)
Q Consensus       193 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~-  271 (413)
                        .+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+ 
T Consensus        80 --~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~  157 (361)
T 2xot_A           80 --SSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIK  157 (361)
T ss_dssp             --CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC
T ss_pred             --ChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhc
Confidence              33568889999999999999986666678999999999999999987778889999999999999999855444444 


Q ss_pred             --ccCCCCCeEecCCcccCCcccccccCCCC--CcEEEccCCccc
Q 048333          272 --GNFTRLQFLFLGFNNFSGDLLGSIGNLRS--LEVIYIAKCNFS  312 (413)
Q Consensus       272 --~~~~~L~~L~l~~~~~~~~~~~~l~~~~~--L~~L~L~~~~~~  312 (413)
                        ..+++|+.|++++|.+.......+..++.  ++.|++.+|.+.
T Consensus       158 ~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          158 DGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             ----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             CcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence              56899999999999998655566777776  488999999886

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.64  E-value=6.6e-15  Score=127.09  Aligned_cols=134  Identities=18%  Similarity=0.195  Sum_probs=87.2

Q ss_pred             CCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccCCCCCeEec
Q 048333          203 GSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFL  282 (413)
Q Consensus       203 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  282 (413)
                      ++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++
T Consensus        40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L  119 (229)
T 3e6j_A           40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM  119 (229)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence            55666666666666555556666666666666666665444444566666777777766665444455666677777777


Q ss_pred             CCcccCCcccccccCCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcc
Q 048333          283 GFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGG  337 (413)
Q Consensus       283 ~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~  337 (413)
                      ++|.+. .++..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+..
T Consensus       120 s~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  173 (229)
T 3e6j_A          120 CCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC  173 (229)
T ss_dssp             CSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred             cCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence            777766 445556667777777777777765445566677777777777777654

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.64  E-value=5.9e-15  Score=126.55  Aligned_cols=152  Identities=21%  Similarity=0.219  Sum_probs=80.5

Q ss_pred             cEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCccccccccccccc
Q 048333          114 KTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFG  193 (413)
Q Consensus       114 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~  193 (413)
                      ++++++++.++ .+|..+  .+.+++|++++|.++.+          ..+..+..+++|+.|++++|.++..        
T Consensus        14 ~~l~~s~n~l~-~iP~~~--~~~~~~L~L~~N~l~~~----------~~~~~~~~l~~L~~L~L~~N~i~~i--------   72 (220)
T 2v70_A           14 TTVDCSNQKLN-KIPEHI--PQYTAELRLNNNEFTVL----------EATGIFKKLPQLRKINFSNNKITDI--------   72 (220)
T ss_dssp             TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCEE----------CCCCCGGGCTTCCEEECCSSCCCEE--------
T ss_pred             CEeEeCCCCcc-cCccCC--CCCCCEEEcCCCcCCcc----------CchhhhccCCCCCEEECCCCcCCEE--------
Confidence            46666666665 344433  23456666666665521          0112345566666666666666533        


Q ss_pred             cccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhcc
Q 048333          194 ELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGN  273 (413)
Q Consensus       194 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~  273 (413)
                       .+..+..+++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|++++|.+.+..+..+..
T Consensus        73 -~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  151 (220)
T 2v70_A           73 -EEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDT  151 (220)
T ss_dssp             -CTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTT
T ss_pred             -CHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcC
Confidence             2234555566666666666665444445555555666665555555444445555555555555555554444444444


Q ss_pred             CCCCCeEecCCccc
Q 048333          274 FTRLQFLFLGFNNF  287 (413)
Q Consensus       274 ~~~L~~L~l~~~~~  287 (413)
                      +++|+.|++++|.+
T Consensus       152 l~~L~~L~L~~N~l  165 (220)
T 2v70_A          152 LHSLSTLNLLANPF  165 (220)
T ss_dssp             CTTCCEEECCSCCE
T ss_pred             CCCCCEEEecCcCC
Confidence            55555555555444

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.62  E-value=2.7e-15  Score=132.35  Aligned_cols=148  Identities=22%  Similarity=0.291  Sum_probs=69.3

Q ss_pred             hcCCCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCccccccc
Q 048333          108 EKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAA  187 (413)
Q Consensus       108 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~  187 (413)
                      ..+++|++|++++|.+.. ++ .+..+++|++|++++|.+..            ++. +..+++|+.|++++|.+++.  
T Consensus        38 ~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~------------~~~-l~~l~~L~~L~L~~N~l~~l--  100 (263)
T 1xeu_A           38 KELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISD------------LSP-LKDLTKLEELSVNRNRLKNL--  100 (263)
T ss_dssp             HHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC------------CGG-GTTCSSCCEEECCSSCCSCC--
T ss_pred             hhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCC------------Chh-hccCCCCCEEECCCCccCCc--
Confidence            344555555555554442 22 34445555555555554441            112 44455555555555554432  


Q ss_pred             cccccccccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCcccccc
Q 048333          188 SFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKV  267 (413)
Q Consensus       188 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~  267 (413)
                              +. +.. ++|+.|++++|.+.. + ..+..+++|+.|++++|.++.. + .+..+++|+.|++++|.+.+. 
T Consensus       101 --------~~-~~~-~~L~~L~L~~N~l~~-~-~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~-  165 (263)
T 1xeu_A          101 --------NG-IPS-ACLSRLFLDNNELRD-T-DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT-  165 (263)
T ss_dssp             --------TT-CCC-SSCCEEECCSSCCSB-S-GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC-
T ss_pred             --------Cc-ccc-CcccEEEccCCccCC-C-hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch-
Confidence                    11 111 445555555555432 2 2344555555555555554422 2 344455555555555555332 


Q ss_pred             chhhccCCCCCeEecCCcccC
Q 048333          268 PHSIGNFTRLQFLFLGFNNFS  288 (413)
Q Consensus       268 ~~~~~~~~~L~~L~l~~~~~~  288 (413)
                       ..+..+++|+.|++++|.+.
T Consensus       166 -~~l~~l~~L~~L~l~~N~~~  185 (263)
T 1xeu_A          166 -GGLTRLKKVNWIDLTGQKCV  185 (263)
T ss_dssp             -TTSTTCCCCCEEEEEEEEEE
T ss_pred             -HHhccCCCCCEEeCCCCccc
Confidence             33455555555555555544

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.60  E-value=2.6e-15  Score=132.46  Aligned_cols=171  Identities=24%  Similarity=0.305  Sum_probs=128.9

Q ss_pred             cCCCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCcccccccc
Q 048333          109 KLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAAS  188 (413)
Q Consensus       109 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~  188 (413)
                      .+.++..++++++.+++ ++ .+..+++|++|++++|.+..            ++ .+..+++|+.|++++|.+++.   
T Consensus        17 ~l~~l~~l~l~~~~i~~-~~-~~~~l~~L~~L~l~~n~i~~------------l~-~l~~l~~L~~L~L~~N~i~~~---   78 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVTD-LV-SQKELSGVQNFNGDNSNIQS------------LA-GMQFFTNLKELHLSHNQISDL---   78 (263)
T ss_dssp             HHHHHHHHHHTCSCTTS-EE-CHHHHTTCSEEECTTSCCCC------------CT-TGGGCTTCCEEECCSSCCCCC---
T ss_pred             HHHHHHHHHhcCCCccc-cc-chhhcCcCcEEECcCCCccc------------ch-HHhhCCCCCEEECCCCccCCC---
Confidence            35567777888888764 33 47788999999999998863            33 577889999999999988853   


Q ss_pred             ccccccccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccc
Q 048333          189 FRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVP  268 (413)
Q Consensus       189 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~  268 (413)
                             +. +..+++|+.|++++|.+.. ++. +.. ++|+.|++++|.+.. + ..+..+++|+.|++++|.+.+. +
T Consensus        79 -------~~-l~~l~~L~~L~L~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~-~-~~l~~l~~L~~L~Ls~N~i~~~-~  144 (263)
T 1xeu_A           79 -------SP-LKDLTKLEELSVNRNRLKN-LNG-IPS-ACLSRLFLDNNELRD-T-DSLIHLKNLEILSIRNNKLKSI-V  144 (263)
T ss_dssp             -------GG-GTTCSSCCEEECCSSCCSC-CTT-CCC-SSCCEEECCSSCCSB-S-GGGTTCTTCCEEECTTSCCCBC-G
T ss_pred             -------hh-hccCCCCCEEECCCCccCC-cCc-ccc-CcccEEEccCCccCC-C-hhhcCcccccEEECCCCcCCCC-h
Confidence                   33 7788899999999998864 333 223 788888888888764 2 3477788888888888887443 3


Q ss_pred             hhhccCCCCCeEecCCcccCCcccccccCCCCCcEEEccCCccccc
Q 048333          269 HSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQ  314 (413)
Q Consensus       269 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~  314 (413)
                       .+..+++|+.|++++|.+.+.  ..+..+++|+.|++++|.++..
T Consensus       145 -~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          145 -MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             -GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             -HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence             577788888888888888754  5677788888888888877643

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.59  E-value=1.1e-16  Score=156.09  Aligned_cols=120  Identities=19%  Similarity=0.256  Sum_probs=62.9

Q ss_pred             ccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccCCCCCeEecCC
Q 048333          205 LKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGF  284 (413)
Q Consensus       205 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  284 (413)
                      |+.|++++|.+.. +|. +..+++|+.|++++|.+. .+|..+..+++|+.|++++|.+.+ +| .+..+++|+.|++++
T Consensus       443 L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~  517 (567)
T 1dce_A          443 VRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCN  517 (567)
T ss_dssp             CSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCS
T ss_pred             ceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCC
Confidence            4555555555542 333 455555555555555554 444455555555555555555533 33 455555666666666


Q ss_pred             cccCCcc-cccccCCCCCcEEEccCCcccccccc---cccCCCCCCEEE
Q 048333          285 NNFSGDL-LGSIGNLRSLEVIYIAKCNFSGQITS---SLRNLTQLVVLD  329 (413)
Q Consensus       285 ~~~~~~~-~~~l~~~~~L~~L~L~~~~~~~~~~~---~~~~~~~L~~L~  329 (413)
                      |.+.+.. +..+..+++|+.|++++|.+++..+.   .+..+++|+.|+
T Consensus       518 N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          518 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL  566 (567)
T ss_dssp             SCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred             CCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence            6555433 55555566666666666665533221   222356666664

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.58  E-value=4.7e-18  Score=165.91  Aligned_cols=124  Identities=15%  Similarity=0.216  Sum_probs=89.1

Q ss_pred             CCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccCCCCCeEecCCcccCCcccccccCCCCCcEEEcc
Q 048333          228 SLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIA  307 (413)
Q Consensus       228 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~  307 (413)
                      .|+.|++++|.++. +|. +..+++|+.|++++|.+. .+|..+..+++|+.|++++|.+.. ++ .+..+++|+.|+++
T Consensus       442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls  516 (567)
T 1dce_A          442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLC  516 (567)
T ss_dssp             TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred             CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECC
Confidence            57888888887764 555 777788888888888774 667777788888888888887774 34 67777888888888


Q ss_pred             CCcccccc-cccccCCCCCCEEECCCCcCcceech-hHhhhcccCCCeeec
Q 048333          308 KCNFSGQI-TSSLRNLTQLVVLDMAQNSYGGTVEL-DVLLTSWKNLEALDI  356 (413)
Q Consensus       308 ~~~~~~~~-~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~~~~~L~~L~l  356 (413)
                      +|.+++.. |..+..+++|+.|++++|.+.+..+. ...+..+|+|+.|++
T Consensus       517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            88877554 77777788888888888877654431 123455777777753

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.57  E-value=1e-14  Score=133.21  Aligned_cols=287  Identities=11%  Similarity=0.058  Sum_probs=172.0

Q ss_pred             CceEEEecCCCccccccCCcccccc-ccccceeeccccCCCCCC-CCccccCcCccccCCcchhh-hhhc--------CC
Q 048333           43 GHVIKLNLSHGCLFGSINSSSSLFK-LVHLKWLNLALNDFNSSE-IPPEIINLSRLELQKPSFEN-LFEK--------LS  111 (413)
Q Consensus        43 ~~l~~L~l~~~~~~~~~~~~~~~~~-l~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~~~i~~-~~~~--------~~  111 (413)
                      .++++|.+++.- ......  .+.. +++|+.||+++|++.... ....+..+..+.+..+.++. +|.+        ++
T Consensus        25 ~~l~~L~l~g~i-~~~~~~--~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~  101 (329)
T 3sb4_A           25 NSITHLTLTGKL-NAEDFR--HLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQ  101 (329)
T ss_dssp             HHCSEEEEEEEE-CHHHHH--HHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECT
T ss_pred             CceeEEEEeccc-cHHHHH--HHHHhhccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccC
Confidence            467778777642 111111  3333 788999999999887211 11122222333444455543 4677        99


Q ss_pred             CCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCccccccccccc
Q 048333          112 NLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRC  191 (413)
Q Consensus       112 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~  191 (413)
                      +|++|++.+ .+....+.+|.+|++|+++++.++.+..+           .+..|.++.++..+.............   
T Consensus       102 ~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i-----------~~~aF~~~~~l~~l~~~~~~~~~~~~~---  166 (329)
T 3sb4_A          102 TLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNL-----------LPEALADSVTAIFIPLGSSDAYRFKNR---  166 (329)
T ss_dssp             TCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEE-----------CTTSSCTTTCEEEECTTCTHHHHTSTT---
T ss_pred             CCcEEECCc-cccchhHHHhhcCcccceEEcCCCCcccc-----------chhhhcCCCceEEecCcchhhhhcccc---
Confidence            999999988 77656667788999999999999887643           335566777777776655322100000   


Q ss_pred             cccccccccCCCCcc-EEeCCCCcCCCcchhhhh----CCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccc
Q 048333          192 FGELPISMGNLGSLK-ELDLSQNGFFGELPTSIR----NLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSK  266 (413)
Q Consensus       192 ~~~~~~~~~~l~~L~-~L~l~~~~~~~~~~~~l~----~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~  266 (413)
                        .-...+..+..|+ .+.+....   .++..+.    ...+++.+.+.+.-...........+++|+.+++++|.+...
T Consensus       167 --i~~~~f~~~~~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I  241 (329)
T 3sb4_A          167 --WEHFAFIEGEPLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTI  241 (329)
T ss_dssp             --TTTSCEEESCCCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEE
T ss_pred             --ccccccccccccceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCccee
Confidence              0112344555665 34443321   1222111    234455555544322111111111357788888887777555


Q ss_pred             cchhhccCCCCCeEecCCcccCCcccccccCCCCCc-EEEccCCcccccccccccCCCCCCEEECCCCcCcceechhHhh
Q 048333          267 VPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLE-VIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLL  345 (413)
Q Consensus       267 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~-~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~  345 (413)
                      ....|..+.+|+.+++..+ +......+|..+++|+ .+.+.+ .++...+.+|.+|++|+.+++++|.+..... . +|
T Consensus       242 ~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~-~-aF  317 (329)
T 3sb4_A          242 PDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGD-E-LF  317 (329)
T ss_dssp             CTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECT-T-TT
T ss_pred             cHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccch-h-hh
Confidence            5566788888888888776 5555666777888888 888877 6654556778888888888888777764333 3 77


Q ss_pred             hcccCCCeeec
Q 048333          346 TSWKNLEALDI  356 (413)
Q Consensus       346 ~~~~~L~~L~l  356 (413)
                      .+|++|+.++.
T Consensus       318 ~~~~~L~~ly~  328 (329)
T 3sb4_A          318 GNGVPSKLIYK  328 (329)
T ss_dssp             CTTCCCCEEEC
T ss_pred             cCCcchhhhcc
Confidence            88888887763

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.55  E-value=2.4e-15  Score=151.28  Aligned_cols=210  Identities=24%  Similarity=0.196  Sum_probs=91.8

Q ss_pred             CCCCcccceEEeeCCCCceEEEecCCCccccccCCccccccccccceeeccccCCCCCCCCccccCcCccccCCcchhhh
Q 048333           27 SVDCYSWDVVHCNKNTGHVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENL  106 (413)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~  106 (413)
                      ......|.+..+  ..++++.|+|.++.+... +.  .+     |+.++++.+.+........  .       ....+..
T Consensus       159 ~~~~~~~~~~~~--s~~~~~~l~L~~n~~~~~-~~--~~-----l~~l~Ls~~~i~~~~~~~n--~-------~~~~~~~  219 (727)
T 4b8c_D          159 STPSGTATNSAV--STPLTPKIELFANGKDEA-NQ--AL-----LQHKKLSQYSIDEDDDIEN--R-------MVMPKDS  219 (727)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCccccCCCcee--cCCccceEEeeCCCCCcc-hh--hH-----hhcCccCcccccCcccccc--c-------eecChhh
Confidence            344455655544  346788899988876542 21  22     3444555544433211000  0       0112445


Q ss_pred             hhcCCCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCcccccc
Q 048333          107 FEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEA  186 (413)
Q Consensus       107 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~  186 (413)
                      +..++.|++|+|++|.+. .+|..+..+++|++|+|++|.++            .+|..+.++++|+.|++++|.++   
T Consensus       220 ~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~------------~lp~~~~~l~~L~~L~Ls~N~l~---  283 (727)
T 4b8c_D          220 KYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT------------ELPAEIKNLSNLRVLDLSHNRLT---  283 (727)
T ss_dssp             --CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS------------CCCGGGGGGTTCCEEECTTSCCS---
T ss_pred             hccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc------------ccChhhhCCCCCCEEeCcCCcCC---
Confidence            667788888888888876 56666667788888888888775            45666777778888888888776   


Q ss_pred             ccccccccccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCC-CCcEEEecCCcccc
Q 048333          187 ASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFS-SLKLLNLRSCGFWS  265 (413)
Q Consensus       187 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~  265 (413)
                             .+|..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.+.+..|..+.... ....+++++|.+.+
T Consensus       284 -------~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~  355 (727)
T 4b8c_D          284 -------SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEI  355 (727)
T ss_dssp             -------SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred             -------ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccC
Confidence                   25666777777777777777775 5666677777777777777777655554443221 11224455555544


Q ss_pred             ccchhhccCCCCCeEecCCc
Q 048333          266 KVPHSIGNFTRLQFLFLGFN  285 (413)
Q Consensus       266 ~~~~~~~~~~~L~~L~l~~~  285 (413)
                      ..|.      .|..|+++.|
T Consensus       356 ~~p~------~l~~l~l~~n  369 (727)
T 4b8c_D          356 PLPH------ERRFIEINTD  369 (727)
T ss_dssp             CCCC------C---------
T ss_pred             cCcc------ccceeEeecc
Confidence            4432      3445555544

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.53  E-value=4.7e-14  Score=115.59  Aligned_cols=91  Identities=18%  Similarity=0.136  Sum_probs=37.0

Q ss_pred             ccCCCCCeEecCCcccCCcccccccCCCCCcEEEccCCcccccc-cccccCCCCCCEEECCCCcCcceech-hHhhhccc
Q 048333          272 GNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQI-TSSLRNLTQLVVLDMAQNSYGGTVEL-DVLLTSWK  349 (413)
Q Consensus       272 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~-~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~~~~  349 (413)
                      ..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++.. +..+..+++|+.|++++|.+.+.... ...+..++
T Consensus        68 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~  147 (168)
T 2ell_A           68 PKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLP  147 (168)
T ss_dssp             CCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCS
T ss_pred             ccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCc
Confidence            33333444444444333222222333444444444444443211 13344444455555555544432211 01344555


Q ss_pred             CCCeeeccCcccc
Q 048333          350 NLEALDISLNRSS  362 (413)
Q Consensus       350 ~L~~L~l~~~~i~  362 (413)
                      +|++|++++|.+.
T Consensus       148 ~L~~L~l~~n~~~  160 (168)
T 2ell_A          148 QLTYLDGYDREDQ  160 (168)
T ss_dssp             SCCEETTEETTSC
T ss_pred             cCcEecCCCCChh
Confidence            5555555555543

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.52  E-value=7e-14  Score=114.52  Aligned_cols=133  Identities=20%  Similarity=0.197  Sum_probs=89.6

Q ss_pred             CCccEEeCCCCcCC-CcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccCCCCCeEe
Q 048333          203 GSLKELDLSQNGFF-GELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLF  281 (413)
Q Consensus       203 ~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  281 (413)
                      ++|++|++++|.+. ..+|..+..+++|+.|++++|.+...  ..+..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            45566666666554 34455555666666666666666533  4566677777777777777555666666678888888


Q ss_pred             cCCcccCCcc-cccccCCCCCcEEEccCCccccccc---ccccCCCCCCEEECCCCcCcc
Q 048333          282 LGFNNFSGDL-LGSIGNLRSLEVIYIAKCNFSGQIT---SSLRNLTQLVVLDMAQNSYGG  337 (413)
Q Consensus       282 l~~~~~~~~~-~~~l~~~~~L~~L~L~~~~~~~~~~---~~~~~~~~L~~L~l~~n~~~~  337 (413)
                      +++|.+.+.. +..+..+++|+.|++++|.+++..+   ..+..+++|+.|++++|.+..
T Consensus       102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~  161 (168)
T 2ell_A          102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE  161 (168)
T ss_dssp             CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred             ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence            8888776532 2567777888888888888774433   367778888888888887653

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.51  E-value=1.1e-14  Score=146.35  Aligned_cols=136  Identities=21%  Similarity=0.192  Sum_probs=85.6

Q ss_pred             chhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccCCCCCeEecCCcccCCcccccccCC
Q 048333          219 LPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNL  298 (413)
Q Consensus       219 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~  298 (413)
                      .+..+..++.|+.|++++|.+. .++..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+. .++..+..+
T Consensus       216 ~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l  292 (727)
T 4b8c_D          216 PKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSC  292 (727)
T ss_dssp             ------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGG
T ss_pred             ChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCC
Confidence            3455666677777777777665 45555556677777777777764 56666777777777777777776 456667777


Q ss_pred             CCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcceechhHhhhcc-cCCCeeeccCcc
Q 048333          299 RSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSW-KNLEALDISLNR  360 (413)
Q Consensus       299 ~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~-~~L~~L~l~~~~  360 (413)
                      ++|+.|+|++|.++ .+|..+..+++|+.|+|++|.+.+..+ . .+... ..+..+++++|.
T Consensus       293 ~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p-~-~~~~~~~~~~~l~l~~N~  352 (727)
T 4b8c_D          293 FQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFL-K-ILTEKSVTGLIFYLRDNR  352 (727)
T ss_dssp             TTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHH-H-HHHHHHHHHHHHHHHHCC
T ss_pred             CCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCCh-H-HHhhcchhhhHHhhccCc
Confidence            77777777777775 556667777777777777777765544 2 22221 112235666666

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.51  E-value=3.2e-14  Score=129.96  Aligned_cols=126  Identities=12%  Similarity=0.006  Sum_probs=93.8

Q ss_pred             CCCcEEEecCCccccccchhhccCCCCCeEecCCcccCCcccccccCCCCCcEEEccCCcccccccccccCCCCCC-EEE
Q 048333          251 SSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLV-VLD  329 (413)
Q Consensus       251 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~-~L~  329 (413)
                      .+++.+.+.+.-...........+++|+.+++++|.+......+|..+++|+.+++.++ ++.....+|..|++|+ .++
T Consensus       202 ~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~  280 (329)
T 3sb4_A          202 RDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLE  280 (329)
T ss_dssp             GGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEE
T ss_pred             cccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEE
Confidence            44555555543221111222234899999999999988777788999999999999987 6656678899999999 999


Q ss_pred             CCCCcCcceechhHhhhcccCCCeeeccCccccccceeeeccccccccccceeeec
Q 048333          330 MAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGL  385 (413)
Q Consensus       330 l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~L~~L~l  385 (413)
                      +.+ .+. .++ ..+|.+|++|+.++++++.++.++...+.     .+++|+.++.
T Consensus       281 l~~-~l~-~I~-~~aF~~c~~L~~l~l~~n~i~~I~~~aF~-----~~~~L~~ly~  328 (329)
T 3sb4_A          281 LPA-SVT-AIE-FGAFMGCDNLRYVLATGDKITTLGDELFG-----NGVPSKLIYK  328 (329)
T ss_dssp             ECT-TCC-EEC-TTTTTTCTTEEEEEECSSCCCEECTTTTC-----TTCCCCEEEC
T ss_pred             Ecc-cce-EEc-hhhhhCCccCCEEEeCCCccCccchhhhc-----CCcchhhhcc
Confidence            988 554 444 33899999999999999998777655443     5677887763

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.51  E-value=4.3e-14  Score=113.32  Aligned_cols=109  Identities=28%  Similarity=0.337  Sum_probs=65.5

Q ss_pred             CCCCcEEEcCCccCC-CCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCcccccccc
Q 048333          110 LSNLKTLNLGDVSID-STIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAAS  188 (413)
Q Consensus       110 ~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~  188 (413)
                      .++|++|++++|.+. +.+|..+..+++|++|++++|.+..            + ..+..+++|++|++++|.+++.   
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~------------~-~~~~~l~~L~~L~Ls~n~i~~~---   79 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS------------I-ANLPKLNKLKKLELSDNRVSGG---   79 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCC------------C-TTCCCCTTCCEEECCSSCCCSC---
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCC------------c-hhhhcCCCCCEEECCCCcccch---
Confidence            467777777777776 5666666777777777777777652            2 4456666677777776666542   


Q ss_pred             ccccccccccccCCCCccEEeCCCCcCCCc-chhhhhCCCCCCEEEccCCcCc
Q 048333          189 FRCFGELPISMGNLGSLKELDLSQNGFFGE-LPTSIRNLFSLEKLDLSFNKLS  240 (413)
Q Consensus       189 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~  240 (413)
                            +|..+..+++|++|++++|.+... .+..+..+++|++|++++|.+.
T Consensus        80 ------~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~  126 (149)
T 2je0_A           80 ------LEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT  126 (149)
T ss_dssp             ------THHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGG
T ss_pred             ------HHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCccc
Confidence                  333444455666666666655432 2244555555555555555444

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.50  E-value=7.8e-14  Score=111.79  Aligned_cols=83  Identities=22%  Similarity=0.122  Sum_probs=34.0

Q ss_pred             CccEEeCCCCcCC-CcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccCCCCCeEec
Q 048333          204 SLKELDLSQNGFF-GELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFL  282 (413)
Q Consensus       204 ~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  282 (413)
                      +++.|++++|.+. ..+|..+..+++|+.|++++|.+...  ..+..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus        18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l   95 (149)
T 2je0_A           18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL   95 (149)
T ss_dssp             GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred             cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence            3444444444433 22333333444444444444443322  23334444444444444443333333334444444444


Q ss_pred             CCcccC
Q 048333          283 GFNNFS  288 (413)
Q Consensus       283 ~~~~~~  288 (413)
                      ++|.+.
T Consensus        96 s~N~i~  101 (149)
T 2je0_A           96 SGNKIK  101 (149)
T ss_dssp             TTSCCC
T ss_pred             CCCcCC
Confidence            444443

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.48  E-value=2.2e-13  Score=114.06  Aligned_cols=113  Identities=20%  Similarity=0.193  Sum_probs=63.7

Q ss_pred             CCCEEEccCCcCcccCCc-ccCCCCCCcEEEecCCccccccchhhccCCCCCeEecCCcccCCcccccccCCCCCcEEEc
Q 048333          228 SLEKLDLSFNKLSGEFPW-STGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYI  306 (413)
Q Consensus       228 ~L~~L~l~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L  306 (413)
                      +++.|++++|.+....+. .+..+++|++|++++|.+.+..+..|..+++|++|++++|.+....+..+..+++|+.|++
T Consensus        30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  109 (192)
T 1w8a_A           30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL  109 (192)
T ss_dssp             TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred             CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence            344444444444322221 2444455555555555554444455555556666666666555444445566666777777


Q ss_pred             cCCcccccccccccCCCCCCEEECCCCcCcceec
Q 048333          307 AKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVE  340 (413)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~  340 (413)
                      ++|++++..+..+..+++|++|++++|.+....+
T Consensus       110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A          110 YDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             CSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             CCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence            7776665556666667777777777777665444

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.45  E-value=1e-12  Score=109.95  Aligned_cols=89  Identities=27%  Similarity=0.297  Sum_probs=41.5

Q ss_pred             ccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccCCCCC
Q 048333          199 MGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQ  278 (413)
Q Consensus       199 ~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  278 (413)
                      +..+++|++|++++|.+....|..+..+++|++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|+
T Consensus        50 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  129 (192)
T 1w8a_A           50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLT  129 (192)
T ss_dssp             GGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCC
T ss_pred             cccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCC
Confidence            44455555555555555444444455555555555555544433333344444444444444444333343444444444


Q ss_pred             eEecCCccc
Q 048333          279 FLFLGFNNF  287 (413)
Q Consensus       279 ~L~l~~~~~  287 (413)
                      +|++++|.+
T Consensus       130 ~L~L~~N~l  138 (192)
T 1w8a_A          130 SLNLASNPF  138 (192)
T ss_dssp             EEECTTCCB
T ss_pred             EEEeCCCCc
Confidence            444444433

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.44  E-value=5.6e-12  Score=117.70  Aligned_cols=151  Identities=14%  Similarity=0.071  Sum_probs=59.8

Q ss_pred             ccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccCCCCC
Q 048333          199 MGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQ  278 (413)
Q Consensus       199 ~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  278 (413)
                      |.+|++|+.+++..+.+...-..++. +.+|+.+.+..+ +.......|..+++|+.+.+..+ +.......|.. .+|+
T Consensus       176 F~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~  251 (401)
T 4fdw_A          176 FYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGIT  251 (401)
T ss_dssp             TTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCS
T ss_pred             hhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCcc
Confidence            44444444444444444322222222 344444444422 22233334444444444444432 21222222333 3444


Q ss_pred             eEecCCcccCCcccccccCCCCCcEEEccCCccc-----ccccccccCCCCCCEEECCCCcCcceechhHhhhcccCCCe
Q 048333          279 FLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFS-----GQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEA  353 (413)
Q Consensus       279 ~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~-----~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~  353 (413)
                      .+.+. +.+......+|..+++|+.+.+.++...     ......|..|++|+.+++.++ +. .+. ..+|.+|.+|+.
T Consensus       252 ~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~-i~-~I~-~~aF~~c~~L~~  327 (401)
T 4fdw_A          252 TVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES-IR-ILG-QGLLGGNRKVTQ  327 (401)
T ss_dssp             EEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT-CC-EEC-TTTTTTCCSCCE
T ss_pred             EEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc-eE-EEh-hhhhcCCCCccE
Confidence            44442 2222233344444445555544443332     122334444555555555422 22 222 124444555555


Q ss_pred             eecc
Q 048333          354 LDIS  357 (413)
Q Consensus       354 L~l~  357 (413)
                      +++.
T Consensus       328 l~lp  331 (401)
T 4fdw_A          328 LTIP  331 (401)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            5553

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.44  E-value=5.9e-12  Score=117.53  Aligned_cols=247  Identities=11%  Similarity=0.032  Sum_probs=173.0

Q ss_pred             hhhcCCCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCccccc
Q 048333          106 LFEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGE  185 (413)
Q Consensus       106 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~  185 (413)
                      +|.++ +|+.+.+.++ +......+|.++ +|+.+.+.. .+..           .-...|.++++|+.+++.+|.++..
T Consensus       131 aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~-----------I~~~aF~~c~~L~~l~l~~n~l~~I  195 (401)
T 4fdw_A          131 AFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQ-----------LKEDIFYYCYNLKKADLSKTKITKL  195 (401)
T ss_dssp             TTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCE-----------ECSSTTTTCTTCCEEECTTSCCSEE
T ss_pred             hcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccE-----------ehHHHhhCcccCCeeecCCCcceEe
Confidence            45565 6888988765 544445567664 699998875 4442           2335688899999999998887754


Q ss_pred             cccccccccccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCcccc
Q 048333          186 AASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWS  265 (413)
Q Consensus       186 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~  265 (413)
                                +.....+..|+.+.+..+ +...-..+|..+++|+.+.+..+ +.......|.. .+|+.+.+.. .+..
T Consensus       196 ----------~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~-~i~~  261 (401)
T 4fdw_A          196 ----------PASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN-GVTN  261 (401)
T ss_dssp             ----------CTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET-TCCE
T ss_pred             ----------chhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC-CccE
Confidence                      322223688999999754 54445578889999999999875 33344455555 7899999954 4444


Q ss_pred             ccchhhccCCCCCeEecCCcccC-----CcccccccCCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcceec
Q 048333          266 KVPHSIGNFTRLQFLFLGFNNFS-----GDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVE  340 (413)
Q Consensus       266 ~~~~~~~~~~~L~~L~l~~~~~~-----~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~  340 (413)
                      .....|..+++|+.+.+.++...     .....+|..+++|+.+.+.+ .++.....+|.+|.+|+.+.+..+ +. .+.
T Consensus       262 I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~-~I~  338 (401)
T 4fdw_A          262 IASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VT-QIN  338 (401)
T ss_dssp             ECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CC-EEC
T ss_pred             EChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-cc-EEc
Confidence            55677899999999999887654     34566788899999999984 466556678889999999999665 43 344


Q ss_pred             hhHhhhcccCCCeeeccCccccccceeeeccccccccccceeeeccCCCC
Q 048333          341 LDVLLTSWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNL  390 (413)
Q Consensus       341 ~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~L~~L~l~~~~l  390 (413)
                       ..+|.+| +|+.+++.+|.+..+....+..    ....++.+++..+.+
T Consensus       339 -~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~----~~~~l~~l~vp~~~~  382 (401)
T 4fdw_A          339 -FSAFNNT-GIKEVKVEGTTPPQVFEKVWYG----FPDDITVIRVPAESV  382 (401)
T ss_dssp             -TTSSSSS-CCCEEEECCSSCCBCCCSSCCC----SCTTCCEEEECGGGH
T ss_pred             -HHhCCCC-CCCEEEEcCCCCcccccccccC----CCCCccEEEeCHHHH
Confidence             3378888 9999999999866554333221    113566777665543

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.44  E-value=2.9e-13  Score=111.71  Aligned_cols=111  Identities=20%  Similarity=0.123  Sum_probs=57.3

Q ss_pred             CCCCCCcEEEecCCccccccchhhccCCCCCeEecCCcccCCcccccccCCCCCcEEEccCCcccccccccccCCCCCCE
Q 048333          248 GNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVV  327 (413)
Q Consensus       248 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~  327 (413)
                      ..+.+|+.|++++|.+. .++......++|++|++++|.+.+.  ..+..+++|+.|++++|.+++..+..+..+++|+.
T Consensus        16 ~~~~~L~~L~l~~n~l~-~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   92 (176)
T 1a9n_A           16 TNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE   92 (176)
T ss_dssp             ECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred             CCcCCceEEEeeCCCCc-hhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence            34556666666666553 2232222223666666666665532  44555566666666666655333333355566666


Q ss_pred             EECCCCcCcceechhHhhhcccCCCeeeccCcccc
Q 048333          328 LDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSS  362 (413)
Q Consensus       328 L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~i~  362 (413)
                      |++++|.+.....+. .+..+++|+.|++++|++.
T Consensus        93 L~L~~N~i~~~~~~~-~l~~l~~L~~L~l~~N~i~  126 (176)
T 1a9n_A           93 LILTNNSLVELGDLD-PLASLKSLTYLCILRNPVT  126 (176)
T ss_dssp             EECCSCCCCCGGGGG-GGGGCTTCCEEECCSSGGG
T ss_pred             EECCCCcCCcchhhH-hhhcCCCCCEEEecCCCCC
Confidence            666666554322211 3455555666666665543

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.42  E-value=2.8e-12  Score=107.28  Aligned_cols=125  Identities=24%  Similarity=0.241  Sum_probs=55.2

Q ss_pred             cEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCccccccccccccc
Q 048333          114 KTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFG  193 (413)
Q Consensus       114 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~  193 (413)
                      ++++++++.+. .+|..+  .++|++|++++|.++            .+|..+.++++|+.|++++|.++..        
T Consensus        13 ~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~------------~ip~~~~~l~~L~~L~Ls~N~i~~i--------   69 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFT------------LVPKELSNYKHLTLIDLSNNRISTL--------   69 (193)
T ss_dssp             TEEECTTSCCS-SCCSCC--CTTCCEEECCSSCCC------------SCCGGGGGCTTCCEEECCSSCCCCC--------
T ss_pred             CEEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCc------------hhHHHhhcccCCCEEECCCCcCCEe--------
Confidence            34455555444 233322  234555555555443            2334444455555555555554432        


Q ss_pred             cccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCc
Q 048333          194 ELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCG  262 (413)
Q Consensus       194 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~  262 (413)
                       .+..+..+++|++|++++|.+....+.++..+++|+.|++++|.+....+..+..+++|+.|++++|.
T Consensus        70 -~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  137 (193)
T 2wfh_A           70 -SNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANP  137 (193)
T ss_dssp             -CTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred             -CHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence             12234444445555555554443333344444444444444444443223333444444444444443

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.41  E-value=4.5e-12  Score=106.06  Aligned_cols=108  Identities=24%  Similarity=0.239  Sum_probs=48.1

Q ss_pred             CccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccCCCCCeEecC
Q 048333          204 SLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLG  283 (413)
Q Consensus       204 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  283 (413)
                      ++++|++++|.+. .+|..+..+++|+.|++++|.++...+..+..+++|++|++++|                      
T Consensus        32 ~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N----------------------   88 (193)
T 2wfh_A           32 DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN----------------------   88 (193)
T ss_dssp             TCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS----------------------
T ss_pred             CCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC----------------------
Confidence            4445555554443 33344444444444444444444333333334444444444444                      


Q ss_pred             CcccCCcccccccCCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCc
Q 048333          284 FNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYG  336 (413)
Q Consensus       284 ~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~  336 (413)
                        .+....+..+..+++|+.|++++|.++...+..+..+++|+.|++++|.+.
T Consensus        89 --~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           89 --RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             --CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             --ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence              333333333444444444444444444333334444555555555555544

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.40  E-value=4.4e-12  Score=104.66  Aligned_cols=112  Identities=20%  Similarity=0.196  Sum_probs=61.8

Q ss_pred             CCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccCCCCCeEecCCcccCCcccccccCCCCCcEEEcc
Q 048333          228 SLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIA  307 (413)
Q Consensus       228 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~  307 (413)
                      +|+.|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+....+..+..+++|+.|+++
T Consensus        29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~  108 (177)
T 2o6r_A           29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALD  108 (177)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECc
Confidence            44455555444443333334445555555555555543333344555666666666666654444445566666666666


Q ss_pred             CCcccccccccccCCCCCCEEECCCCcCccee
Q 048333          308 KCNFSGQITSSLRNLTQLVVLDMAQNSYGGTV  339 (413)
Q Consensus       308 ~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~  339 (413)
                      +|.+++..+..+..+++|+.|++++|.+.+..
T Consensus       109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~  140 (177)
T 2o6r_A          109 TNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  140 (177)
T ss_dssp             SSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred             CCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence            66666444444556677777777777665433

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.39  E-value=7e-12  Score=103.44  Aligned_cols=111  Identities=23%  Similarity=0.203  Sum_probs=62.8

Q ss_pred             CCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccCCCCCeEec
Q 048333          203 GSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFL  282 (413)
Q Consensus       203 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  282 (413)
                      ++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|++|++
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l  107 (177)
T 2o6r_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL  107 (177)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence            34555555555554333344455556666666655555434444555666666666666654444444556666666666


Q ss_pred             CCcccCCcccccccCCCCCcEEEccCCcccc
Q 048333          283 GFNNFSGDLLGSIGNLRSLEVIYIAKCNFSG  313 (413)
Q Consensus       283 ~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~  313 (413)
                      ++|.+....+..+..+++|+.|++++|.+..
T Consensus       108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A          108 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             CSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             cCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence            6666654444445556666777776666653

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.37  E-value=2.2e-12  Score=106.38  Aligned_cols=109  Identities=19%  Similarity=0.101  Sum_probs=52.6

Q ss_pred             cCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccCCCCCe
Q 048333          200 GNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQF  279 (413)
Q Consensus       200 ~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  279 (413)
                      ..+.+|++|++++|.+. .++......++|+.|++++|.+...  ..+..+++|++|++++|.+.+..+..+..+++|++
T Consensus        16 ~~~~~L~~L~l~~n~l~-~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   92 (176)
T 1a9n_A           16 TNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE   92 (176)
T ss_dssp             ECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred             CCcCCceEEEeeCCCCc-hhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence            34445555555555554 2222112222555565555555432  33455555666666665553332233355555555


Q ss_pred             EecCCcccCCcccc--cccCCCCCcEEEccCCccc
Q 048333          280 LFLGFNNFSGDLLG--SIGNLRSLEVIYIAKCNFS  312 (413)
Q Consensus       280 L~l~~~~~~~~~~~--~l~~~~~L~~L~L~~~~~~  312 (413)
                      |++++|.+.+ .+.  .+..+++|+.|++++|.++
T Consensus        93 L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~  126 (176)
T 1a9n_A           93 LILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVT  126 (176)
T ss_dssp             EECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGG
T ss_pred             EECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCC
Confidence            6555555542 222  3444555555555555544

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.34  E-value=1.9e-14  Score=121.29  Aligned_cols=150  Identities=21%  Similarity=0.251  Sum_probs=99.8

Q ss_pred             hhcCCCCcEEEcCCccCCCCcCc------cccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCC
Q 048333          107 FEKLSNLKTLNLGDVSIDSTIPH------NIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLN  180 (413)
Q Consensus       107 ~~~~~~L~~L~l~~~~~~~~~~~------~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~  180 (413)
                      +...+.++.++++.+.+.+..|.      .+..+++|++|++++|.+.            .+| .+..+++|+.|++++|
T Consensus        14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~------------~l~-~~~~l~~L~~L~l~~n   80 (198)
T 1ds9_A           14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE------------KIS-SLSGMENLRILSLGRN   80 (198)
T ss_dssp             HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEES------------CCC-CHHHHTTCCEEEEEEE
T ss_pred             HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCc------------ccc-ccccCCCCCEEECCCC
Confidence            44566777777777776665554      6777888888888888776            244 6677788888888888


Q ss_pred             ccccccccccccccccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCC-cccCCCCCCcEEEec
Q 048333          181 ELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFP-WSTGNFSSLKLLNLR  259 (413)
Q Consensus       181 ~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~  259 (413)
                      .++.          +|..+..+++|+.|++++|.+.. ++ .+..+++|+.|++++|.+....+ ..+..+++|++|+++
T Consensus        81 ~l~~----------l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~  148 (198)
T 1ds9_A           81 LIKK----------IENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLA  148 (198)
T ss_dssp             EECS----------CSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEEC
T ss_pred             Cccc----------ccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEec
Confidence            7763          44455556778888888887763 44 46677778888887777653211 345667777777777


Q ss_pred             CCccccccch----------hhccCCCCCeEe
Q 048333          260 SCGFWSKVPH----------SIGNFTRLQFLF  281 (413)
Q Consensus       260 ~~~~~~~~~~----------~~~~~~~L~~L~  281 (413)
                      +|.+.+..+.          .+..+++|+.|+
T Consensus       149 ~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld  180 (198)
T 1ds9_A          149 GNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             SCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred             CCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence            7766443332          255566666665

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.33  E-value=8.5e-11  Score=109.93  Aligned_cols=146  Identities=11%  Similarity=0.093  Sum_probs=76.0

Q ss_pred             ccCCCCCCcEEEecCCccccccchhhccCCCCCeEecCCcccCCcccccccCCCCCcEEEccCCcccccccccccCCCCC
Q 048333          246 STGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQL  325 (413)
Q Consensus       246 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L  325 (413)
                      .+..+..++.+.+..+.. ......|..+..++.+......+.   ...+..+.+|+.+.+..+ ++.....+|..|.+|
T Consensus       248 ~f~~~~~l~~~~~~~~~~-~i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L  322 (394)
T 4fs7_A          248 VFYGCTDLESISIQNNKL-RIGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSL  322 (394)
T ss_dssp             TTTTCSSCCEEEECCTTC-EECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTC
T ss_pred             cccccccceeEEcCCCcc-eeeccccccccccceeccCceeec---cccccccccccccccccc-cceechhhhcCCCCC
Confidence            344445555555544321 222333455555555554443322   234455666777766543 332334566677777


Q ss_pred             CEEECCCCcCcceechhHhhhcccCCCeeeccCccccccceeeeccccccccccceeeeccCCCCCCcchHhhcCCCCcE
Q 048333          326 VVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLTKFPNFLENQNHLVI  405 (413)
Q Consensus       326 ~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~  405 (413)
                      +.+++..+ +. .+. ..+|.+|.+|+.+++..+ ++.++...+.     .|.+|+.+.+..+ +..+...+.+|++|+.
T Consensus       323 ~~i~lp~~-v~-~I~-~~aF~~c~~L~~i~lp~~-l~~I~~~aF~-----~C~~L~~i~lp~~-~~~~~~~F~~c~~L~~  392 (394)
T 4fs7_A          323 VSIDLPYL-VE-EIG-KRSFRGCTSLSNINFPLS-LRKIGANAFQ-----GCINLKKVELPKR-LEQYRYDFEDTTKFKW  392 (394)
T ss_dssp             CEECCCTT-CC-EEC-TTTTTTCTTCCEECCCTT-CCEECTTTBT-----TCTTCCEEEEEGG-GGGGGGGBCTTCEEEE
T ss_pred             CEEEeCCc-cc-EEh-HHhccCCCCCCEEEECcc-ccEehHHHhh-----CCCCCCEEEECCC-CEEhhheecCCCCCcE
Confidence            77777543 32 333 236677777777777655 4444332221     4666777776543 3334455666666665


Q ss_pred             E
Q 048333          406 L  406 (413)
Q Consensus       406 L  406 (413)
                      +
T Consensus       393 I  393 (394)
T 4fs7_A          393 I  393 (394)
T ss_dssp             E
T ss_pred             E
Confidence            4

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.32  E-value=3.9e-13  Score=124.27  Aligned_cols=185  Identities=15%  Similarity=0.175  Sum_probs=123.4

Q ss_pred             CCCCCEEEccCCcCccc----CCcccC-CCCCCcEEEecCCccccccchh-hccCCCCCeEecCCcccCCcccccc----
Q 048333          226 LFSLEKLDLSFNKLSGE----FPWSTG-NFSSLKLLNLRSCGFWSKVPHS-IGNFTRLQFLFLGFNNFSGDLLGSI----  295 (413)
Q Consensus       226 ~~~L~~L~l~~~~~~~~----~~~~l~-~~~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~l----  295 (413)
                      ++.|+.|++++|.++..    +...+. ..++|++|++++|.+.+..... ...+++|+.|++++|.+.+.....+    
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            46899999999988633    222233 3368999999999885443332 3446789999999999876544444    


Q ss_pred             -cCCCCCcEEEccCCccccc----ccccccCCCCCCEEECCCCcCccee--chhHhhhcccCCCeeeccCccccccceee
Q 048333          296 -GNLRSLEVIYIAKCNFSGQ----ITSSLRNLTQLVVLDMAQNSYGGTV--ELDVLLTSWKNLEALDISLNRSSVLTKAT  368 (413)
Q Consensus       296 -~~~~~L~~L~L~~~~~~~~----~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~~~~~~~~L~~L~l~~~~i~~l~~~~  368 (413)
                       ...+.|+.|++++|.+++.    ++..+..+++|++|++++|.+.+..  .+...+..+++|++|++++|.|+..+.. 
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~-  229 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL-  229 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHH-
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHH-
Confidence             2468899999999998743    4445577899999999999987432  1223567788999999999996543211 


Q ss_pred             ecccccc-ccccceeeeccCCCCC-CcchHhhcC---CC--CcEEe--CCCCC
Q 048333          369 FDATTDT-TSQKIQYRGLRSCNLT-KFPNFLENQ---NH--LVILN--LSDNR  412 (413)
Q Consensus       369 ~~~~~~~-~~~~L~~L~l~~~~l~-~l~~~~~~l---~~--L~~L~--l~~n~  412 (413)
                       .....+ ..++|++|++++|.|+ .-...+..+   ..  |+.+.  +.++.
T Consensus       230 -~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~  281 (372)
T 3un9_A          230 -ALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTA  281 (372)
T ss_dssp             -HHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----
T ss_pred             -HHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCc
Confidence             111212 5678999999999998 222333322   21  66666  55554

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.28  E-value=7.6e-14  Score=117.60  Aligned_cols=134  Identities=22%  Similarity=0.250  Sum_probs=77.7

Q ss_pred             hhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccCCCCCeEecCCcccCCcccccccCCCC
Q 048333          221 TSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRS  300 (413)
Q Consensus       221 ~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~  300 (413)
                      ..+..+++|++|++++|.+.. ++ .+..+++|+.|++++|.+. .++..+..+++|+.|++++|.+.+ .+ .+..+++
T Consensus        42 ~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~  116 (198)
T 1ds9_A           42 ATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVN  116 (198)
T ss_dssp             HHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHH
T ss_pred             HHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCC
Confidence            355666666666666665553 33 4555566666666666553 444445555666666666666653 22 4555666


Q ss_pred             CcEEEccCCccccccc-ccccCCCCCCEEECCCCcCcceech--------hHhhhcccCCCeeeccCccc
Q 048333          301 LEVIYIAKCNFSGQIT-SSLRNLTQLVVLDMAQNSYGGTVEL--------DVLLTSWKNLEALDISLNRS  361 (413)
Q Consensus       301 L~~L~L~~~~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~--------~~~~~~~~~L~~L~l~~~~i  361 (413)
                      |+.|++++|.+++... ..+..+++|++|++++|.+.+..+.        ...+..+++|++||  ++.+
T Consensus       117 L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i  184 (198)
T 1ds9_A          117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPV  184 (198)
T ss_dssp             SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGG
T ss_pred             CCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--Cccc
Confidence            6777776666653221 3455667777777777766543220        12466777788776  5554

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.24  E-value=1.1e-12  Score=121.38  Aligned_cols=114  Identities=17%  Similarity=0.156  Sum_probs=53.3

Q ss_pred             CCccEEECCCCcccccccccccccccccccc-CCCCccEEeCCCCcCCCcchhhh-hCCCCCCEEEccCCcCcccCCccc
Q 048333          170 SKLLHLDLSLNELQGEAASFRCFGELPISMG-NLGSLKELDLSQNGFFGELPTSI-RNLFSLEKLDLSFNKLSGEFPWST  247 (413)
Q Consensus       170 ~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~l  247 (413)
                      +.|+.|++++|.++.....     .+...+. ..++|++|++++|.+.......+ ..+++|+.|++++|.++......+
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~-----~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L  146 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCT-----VVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDL  146 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHH-----HHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHH-----HHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHH
Confidence            5677777777777653221     1222222 22567777777776643322222 223456666666665542211111


Q ss_pred             -----CCCCCCcEEEecCCccccc----cchhhccCCCCCeEecCCcccC
Q 048333          248 -----GNFSSLKLLNLRSCGFWSK----VPHSIGNFTRLQFLFLGFNNFS  288 (413)
Q Consensus       248 -----~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~  288 (413)
                           ...++|++|++++|.+.+.    ++..+...++|++|++++|.+.
T Consensus       147 ~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~  196 (372)
T 3un9_A          147 RDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLG  196 (372)
T ss_dssp             HHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCH
T ss_pred             HHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCC
Confidence                 1234455555555544221    1222233444445555444443

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.21  E-value=4.1e-10  Score=105.26  Aligned_cols=298  Identities=12%  Similarity=0.055  Sum_probs=178.8

Q ss_pred             ccccccccceeeccccCCCCCCCCccccCcCccccCCcchhhhhhcCCCCcEEEcCCccCCCCcCccccCCCCCcEEEcc
Q 048333           64 SLFKLVHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENLFEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLR  143 (413)
Q Consensus        64 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  143 (413)
                      +|..+.+|+.+.+..+ +..  +.                ..+|.+|.+|+.+++.++ +......+|.+|+.|+.+.+.
T Consensus        66 AF~~c~~L~~i~lp~~-i~~--I~----------------~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p  125 (394)
T 4fs7_A           66 AFQGCRKVTEIKIPST-VRE--IG----------------EFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLP  125 (394)
T ss_dssp             TTTTCTTEEEEECCTT-CCE--EC----------------TTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred             HhhCCCCceEEEeCCC-ccC--cc----------------hhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhccc
Confidence            7888889999888643 322  11                123556666666666543 222233445555555554443


Q ss_pred             CCcccccchhhhh-----------hcccCCCccccCCCCccEEECCCCccccccccccccccccccccCCCCccEEeCCC
Q 048333          144 NCELQAMCSFFLI-----------QISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQ  212 (413)
Q Consensus       144 ~~~l~~~~~~~~~-----------~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~  212 (413)
                      .+ +..+......           .....-...|.++++|+.+.+..+... .         -...|.++.+|+.+.+..
T Consensus       126 ~~-l~~i~~~aF~~~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~~~~-I---------~~~~F~~c~~L~~i~l~~  194 (394)
T 4fs7_A          126 LM-LKSIGVEAFKGCDFKEITIPEGVTVIGDEAFATCESLEYVSLPDSMET-L---------HNGLFSGCGKLKSIKLPR  194 (394)
T ss_dssp             TT-CCEECTTTTTTCCCSEEECCTTCCEECTTTTTTCTTCCEEECCTTCCE-E---------CTTTTTTCTTCCBCCCCT
T ss_pred             Cc-eeeecceeeecccccccccCccccccchhhhcccCCCcEEecCCccce-e---------ccccccCCCCceEEEcCC
Confidence            22 1111000000           000011234666777777777654211 1         123466777777777765


Q ss_pred             CcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccCCCCCeEecCCcccCCccc
Q 048333          213 NGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLL  292 (413)
Q Consensus       213 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  292 (413)
                      + +...-..++..+..|+.+.+..+...  +.........|+.+.+.... .......+..+..++.+.+..+... ...
T Consensus       195 ~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~~-i~~  269 (394)
T 4fs7_A          195 N-LKIIRDYCFAECILLENMEFPNSLYY--LGDFALSKTGVKNIIIPDSF-TELGKSVFYGCTDLESISIQNNKLR-IGG  269 (394)
T ss_dssp             T-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTCCCCEEEECTTC-CEECSSTTTTCSSCCEEEECCTTCE-ECS
T ss_pred             C-ceEeCchhhccccccceeecCCCceE--eehhhcccCCCceEEECCCc-eecccccccccccceeEEcCCCcce-eec
Confidence            4 32233456677777777776554332  22233345678888776532 2333455778888888888766433 445


Q ss_pred             ccccCCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcceechhHhhhcccCCCeeeccCccccccceeeeccc
Q 048333          293 GSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTKATFDAT  372 (413)
Q Consensus       293 ~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~  372 (413)
                      ..+..++.++.+......+   ....+..+.+|+.+.+..+ +. .++ ..++.+|.+|+.+++..+ ++.++...+.  
T Consensus       270 ~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~-i~-~I~-~~aF~~c~~L~~i~lp~~-v~~I~~~aF~--  340 (394)
T 4fs7_A          270 SLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS-VK-FIG-EEAFESCTSLVSIDLPYL-VEEIGKRSFR--  340 (394)
T ss_dssp             CTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT-CC-EEC-TTTTTTCTTCCEECCCTT-CCEECTTTTT--
T ss_pred             cccccccccceeccCceee---ccccccccccccccccccc-cc-eec-hhhhcCCCCCCEEEeCCc-ccEEhHHhcc--
Confidence            6677788888888766443   2346778999999999765 33 444 338999999999999754 5544433322  


Q ss_pred             cccccccceeeeccCCCCCCcc-hHhhcCCCCcEEeCCC
Q 048333          373 TDTTSQKIQYRGLRSCNLTKFP-NFLENQNHLVILNLSD  410 (413)
Q Consensus       373 ~~~~~~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~l~~  410 (413)
                         .|.+|+.+.+..+ ++.+. ..|.+|++|+.+++..
T Consensus       341 ---~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~  375 (394)
T 4fs7_A          341 ---GCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPK  375 (394)
T ss_dssp             ---TCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEG
T ss_pred             ---CCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECC
Confidence               6789999999776 66554 5688999999998854

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.14  E-value=3.6e-10  Score=92.35  Aligned_cols=105  Identities=18%  Similarity=0.176  Sum_probs=65.5

Q ss_pred             CEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccCCCCCeEecCCcccCCcccccccCCCCCcEEEccCC
Q 048333          230 EKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKC  309 (413)
Q Consensus       230 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~  309 (413)
                      +.++++++.+. .+|..+  .++++.|++++|.+.+..+..|..+++|++|++++|.+....+..+..+++|+.|++++|
T Consensus        12 ~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   88 (170)
T 3g39_A           12 TTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN   88 (170)
T ss_dssp             TEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence            44555555544 233333  255666666666665555555666667777777777666554555666777777777777


Q ss_pred             cccccccccccCCCCCCEEECCCCcCcc
Q 048333          310 NFSGQITSSLRNLTQLVVLDMAQNSYGG  337 (413)
Q Consensus       310 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~  337 (413)
                      .+++..+..+..+++|+.|++++|.+..
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c  116 (170)
T 3g39_A           89 QLKSIPRGAFDNLKSLTHIWLLNNPWDC  116 (170)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred             ccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence            7765555556677777777777777653

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.12  E-value=5.9e-10  Score=91.07  Aligned_cols=64  Identities=25%  Similarity=0.189  Sum_probs=26.6

Q ss_pred             ccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCc
Q 048333          199 MGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCG  262 (413)
Q Consensus       199 ~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~  262 (413)
                      +..+++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.
T Consensus        50 ~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  113 (170)
T 3g39_A           50 FDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNP  113 (170)
T ss_dssp             TTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             hcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCC
Confidence            4444444444444444443333333444444444444444433223333344444444444443

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.12  E-value=5.8e-10  Score=91.45  Aligned_cols=105  Identities=15%  Similarity=0.191  Sum_probs=60.5

Q ss_pred             CEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccCCCCCeEecCCcccCCcccccccCCCCCcEEEccCC
Q 048333          230 EKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKC  309 (413)
Q Consensus       230 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~  309 (413)
                      +.++++++.+. .+|..+.  ++|+.|++++|.+.+..+..|..+++|++|++++|.+....+..+..+++|+.|++++|
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            34444444443 2333222  55566666666554444555666666666666666665444444556666777777776


Q ss_pred             cccccccccccCCCCCCEEECCCCcCcc
Q 048333          310 NFSGQITSSLRNLTQLVVLDMAQNSYGG  337 (413)
Q Consensus       310 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~  337 (413)
                      .+++..+..+..+++|+.|++++|.+..
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c  119 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPWDC  119 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCccc
Confidence            6664444446667777777777776653

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.11  E-value=6.2e-09  Score=97.24  Aligned_cols=131  Identities=14%  Similarity=0.136  Sum_probs=72.7

Q ss_pred             chhhccCCCCCeEecCCcccCCcccccccCCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcceechhHhhhc
Q 048333          268 PHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTS  347 (413)
Q Consensus       268 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~  347 (413)
                      ...|..+.+|+.+.+..+... ....++..++.|+.+.+.. .++.....+|..|.+|+.+++..+ +. .+. ..+|.+
T Consensus       258 ~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~-~~aF~~  332 (394)
T 4gt6_A          258 THAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-IT-QIL-DDAFAG  332 (394)
T ss_dssp             TTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CC-EEC-TTTTTT
T ss_pred             cceeeecccccEEecccccce-ecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-cc-Eeh-HhHhhC
Confidence            345667777777777654322 4455666677777777753 344344556777777777777654 22 333 336777


Q ss_pred             ccCCCeeeccCccccccceeeeccccccccccceeeeccCCCCCCcchHhhcCCCCcEEeCCCC
Q 048333          348 WKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLTKFPNFLENQNHLVILNLSDN  411 (413)
Q Consensus       348 ~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n  411 (413)
                      |.+|+.+.|..+ ++.++...+.     .|.+|+.+.+.++...  ...+..+.+|+.+.+..+
T Consensus       333 C~~L~~i~ip~s-v~~I~~~aF~-----~C~~L~~i~~~~~~~~--~~~~~~~~~L~~i~i~~~  388 (394)
T 4gt6_A          333 CEQLERIAIPSS-VTKIPESAFS-----NCTALNNIEYSGSRSQ--WNAISTDSGLQNLPVAPG  388 (394)
T ss_dssp             CTTCCEEEECTT-CCBCCGGGGT-----TCTTCCEEEESSCHHH--HHTCBCCCCC--------
T ss_pred             CCCCCEEEECcc-cCEEhHhHhh-----CCCCCCEEEECCceee--hhhhhccCCCCEEEeCCC
Confidence            777777777644 4444433322     5667777777665322  133456677777766554

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.09  E-value=9.4e-10  Score=90.17  Aligned_cols=14  Identities=21%  Similarity=0.190  Sum_probs=5.9

Q ss_pred             CCccEEECCCCccc
Q 048333          170 SKLLHLDLSLNELQ  183 (413)
Q Consensus       170 ~~L~~L~l~~~~i~  183 (413)
                      ++|+.|++++|.++
T Consensus        33 ~~L~~L~Ls~N~l~   46 (174)
T 2r9u_A           33 TDKQRLWLNNNQIT   46 (174)
T ss_dssp             TTCSEEECCSSCCC
T ss_pred             CCCcEEEeCCCCcc
Confidence            34444444444443

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.05  E-value=1.7e-08  Score=94.23  Aligned_cols=269  Identities=11%  Similarity=0.064  Sum_probs=146.6

Q ss_pred             hhhcCCCCcEEEcCCcc---CCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCcc
Q 048333          106 LFEKLSNLKTLNLGDVS---IDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNEL  182 (413)
Q Consensus       106 ~~~~~~~L~~L~l~~~~---~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i  182 (413)
                      +|.+|.+|+.+.+.++.   ++.....+|..|.+|+.+.+..+ ++.           .-...+..+.+|+.+.+..+. 
T Consensus        82 AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~-----------I~~~aF~~c~~L~~i~lp~~~-  148 (394)
T 4gt6_A           82 AFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTE-----------IDSEAFHHCEELDTVTIPEGV-  148 (394)
T ss_dssp             TTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSE-----------ECTTTTTTCTTCCEEECCTTC-
T ss_pred             HhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cce-----------ehhhhhhhhccccccccccee-
Confidence            35555566666554432   22222334555555555544332 111           112334556666666664331 


Q ss_pred             ccccccccccccccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCc
Q 048333          183 QGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCG  262 (413)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~  262 (413)
                      ...         -...+..+..|+.+.+..+ +...-..++. ...|+.+.+...... .....+..+..++........
T Consensus       149 ~~I---------~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~~~-i~~~af~~c~~l~~~~~~~~~  216 (394)
T 4gt6_A          149 TSV---------ADGMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAKVTR-IGTNAFSECFALSTITSDSES  216 (394)
T ss_dssp             CEE---------CTTTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTTCCE-ECTTTTTTCTTCCEEEECCSS
T ss_pred             eee---------cccceecccccccccccce-eeEecccccc-ccceeEEEECCcccc-cccchhhhccccceecccccc
Confidence            111         1123555666666666543 2111222332 345666666543222 333445555566555544332


Q ss_pred             cccccc-------------hhhccCCCCCeEecCCcccCCcccccccCCCCCcEEEccCCcccccccccccCCCCCCEEE
Q 048333          263 FWSKVP-------------HSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLD  329 (413)
Q Consensus       263 ~~~~~~-------------~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~  329 (413)
                      ......             ..+.....+..+.+... +......+|..+..|+.+.+..... .....+|..|+.|+.+.
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~-v~~i~~~aF~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~  294 (394)
T 4gt6_A          217 YPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNG-VARIETHAFDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIE  294 (394)
T ss_dssp             SCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTT-EEEECTTTTTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEE
T ss_pred             cccccceeecccccccccccccccccccceEEcCCc-ceEcccceeeecccccEEecccccc-eecCccccccccccccc
Confidence            210000             00111223334444322 2223455677889999999876443 24566788999999999


Q ss_pred             CCCCcCcceechhHhhhcccCCCeeeccCccccccceeeeccccccccccceeeeccCCCCCCcc-hHhhcCCCCcEEeC
Q 048333          330 MAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLTKFP-NFLENQNHLVILNL  408 (413)
Q Consensus       330 l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~l  408 (413)
                      +... +. .++ ..+|.+|.+|+.++|..+ ++.+++..+.     .|.+|+.+.+..+ ++.+. ..|.+|++|+.+++
T Consensus       295 l~~~-i~-~I~-~~aF~~c~~L~~i~lp~~-v~~I~~~aF~-----~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~  364 (394)
T 4gt6_A          295 FSSR-IT-ELP-ESVFAGCISLKSIDIPEG-ITQILDDAFA-----GCEQLERIAIPSS-VTKIPESAFSNCTALNNIEY  364 (394)
T ss_dssp             CCTT-CC-EEC-TTTTTTCTTCCEEECCTT-CCEECTTTTT-----TCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEE
T ss_pred             CCCc-cc-ccC-ceeecCCCCcCEEEeCCc-ccEehHhHhh-----CCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEE
Confidence            9643 33 444 348999999999999865 4444433322     6789999999654 66554 67899999999999


Q ss_pred             CCC
Q 048333          409 SDN  411 (413)
Q Consensus       409 ~~n  411 (413)
                      .++
T Consensus       365 ~~~  367 (394)
T 4gt6_A          365 SGS  367 (394)
T ss_dssp             SSC
T ss_pred             CCc
Confidence            876

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.92  E-value=1.8e-09  Score=98.91  Aligned_cols=189  Identities=15%  Similarity=0.135  Sum_probs=105.1

Q ss_pred             CCccEEECCCCccccccccccccccccccccCCCCccEEeCCCCcCC---------CcchhhhhCCCCCCEEEccCCcCc
Q 048333          170 SKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFF---------GELPTSIRNLFSLEKLDLSFNKLS  240 (413)
Q Consensus       170 ~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~---------~~~~~~l~~~~~L~~L~l~~~~~~  240 (413)
                      ..++.|.+.......... -.....+...+..+++|+.|.+......         ..+...+..+|+|+.|.++++...
T Consensus       107 ~~v~~L~lg~~~~~~~~~-~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l  185 (362)
T 2ra8_A          107 PSLKQITIGXWGYEGEDC-SDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL  185 (362)
T ss_dssp             GGCSEEEECCCCSSSCCS-HHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC
T ss_pred             hhcceEEEcccccCCCcH-HHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc
Confidence            457788887655331000 0011123344556788888888654221         124455677888888888776311


Q ss_pred             ccCCcccCCCCCCcEEEecCCccccccchhhc--cCCCCCeEecCCc--cc-CCc----ccccc--cCCCCCcEEEccCC
Q 048333          241 GEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIG--NFTRLQFLFLGFN--NF-SGD----LLGSI--GNLRSLEVIYIAKC  309 (413)
Q Consensus       241 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~--~~-~~~----~~~~l--~~~~~L~~L~L~~~  309 (413)
                       .++. + ..++|+.|++..|.+.......+.  .+++|++|+++.+  .. .+.    +...+  ..+|+|+.|++.+|
T Consensus       186 -~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~  262 (362)
T 2ra8_A          186 -SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDA  262 (362)
T ss_dssp             -BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESC
T ss_pred             -eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCC
Confidence             2232 2 267888888887776444333343  6788888887532  11 110    11112  23677777777777


Q ss_pred             cccccccccc---cCCCCCCEEECCCCcCcceec--hhHhhhcccCCCeeeccCcccc
Q 048333          310 NFSGQITSSL---RNLTQLVVLDMAQNSYGGTVE--LDVLLTSWKNLEALDISLNRSS  362 (413)
Q Consensus       310 ~~~~~~~~~~---~~~~~L~~L~l~~n~~~~~~~--~~~~~~~~~~L~~L~l~~~~i~  362 (413)
                      .+.+..+..+   ..+++|++|+++.|.+.+...  +...+..+++|+.|++++|.++
T Consensus       263 ~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          263 EEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             TTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred             CCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence            7654322222   246677777777777664321  1112345677777777777643

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.88  E-value=1.2e-08  Score=93.56  Aligned_cols=103  Identities=17%  Similarity=0.174  Sum_probs=58.6

Q ss_pred             EEeCCCC-cCCCcchhhhhCCCCCCEEEccC-CcCcccCCcccCCCCCCcEEEecCCccccccchhhccCCCCCeEecCC
Q 048333          207 ELDLSQN-GFFGELPTSIRNLFSLEKLDLSF-NKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGF  284 (413)
Q Consensus       207 ~L~l~~~-~~~~~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  284 (413)
                      .++.+++ .+. .+|. +..+.+|+.|++++ |.+....+..+..+++|+.|++++|.+.+..+..|..+++|+.|+|++
T Consensus        12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence            4566655 454 4555 66666666666664 666544445566666666666666666555555556666666666666


Q ss_pred             cccCCcccccccCCCCCcEEEccCCccc
Q 048333          285 NNFSGDLLGSIGNLRSLEVIYIAKCNFS  312 (413)
Q Consensus       285 ~~~~~~~~~~l~~~~~L~~L~L~~~~~~  312 (413)
                      |.+....+..+..++ |+.|++.+|.+.
T Consensus        90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           90 NALESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             SCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             CccceeCHHHcccCC-ceEEEeeCCCcc
Confidence            665543333333333 555555555554

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.82  E-value=6.1e-09  Score=95.44  Aligned_cols=191  Identities=13%  Similarity=0.118  Sum_probs=117.1

Q ss_pred             CccccCCCCccEEECCCCccccccccccccccccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCccc
Q 048333          163 PSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGE  242 (413)
Q Consensus       163 ~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~  242 (413)
                      ...+..+++|+.|.+.+........+-...+.+...+..+++|++|.++++.-. .++. + .+++|+.|++..+.+...
T Consensus       132 ~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~  208 (362)
T 2ra8_A          132 VENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDS  208 (362)
T ss_dssp             HTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHH
T ss_pred             HHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChH
Confidence            344556789999988765332110000001124455677889999999887322 2222 3 378999999988876533


Q ss_pred             CCccc--CCCCCCcEEEecCC--cccc-----ccchhh--ccCCCCCeEecCCcccCCcccccc---cCCCCCcEEEccC
Q 048333          243 FPWST--GNFSSLKLLNLRSC--GFWS-----KVPHSI--GNFTRLQFLFLGFNNFSGDLLGSI---GNLRSLEVIYIAK  308 (413)
Q Consensus       243 ~~~~l--~~~~~L~~L~l~~~--~~~~-----~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~l---~~~~~L~~L~L~~  308 (413)
                      ....+  ..+|+|+.|+++.+  ...+     .+...+  ..+++|++|++.+|.+.+.....+   ..+++|+.|+|+.
T Consensus       209 ~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~  288 (362)
T 2ra8_A          209 VVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISA  288 (362)
T ss_dssp             HHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCS
T ss_pred             HHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCC
Confidence            22222  36789999998532  1111     111122  247899999999888764333333   2478999999999


Q ss_pred             Cccccc----ccccccCCCCCCEEECCCCcCcceechhHhhhc-ccCCCeeeccCcc
Q 048333          309 CNFSGQ----ITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTS-WKNLEALDISLNR  360 (413)
Q Consensus       309 ~~~~~~----~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~-~~~L~~L~l~~~~  360 (413)
                      |.+.+.    ++..+..+++|+.|++++|.+++... . .+.. +  ...+++++++
T Consensus       289 n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~-~-~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          289 GVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMK-K-ELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             SCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHH-H-HHHHHC--CSEEECCSBC
T ss_pred             CCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHH-H-HHHHHc--CCEEEecCCc
Confidence            988753    23333567899999999998764322 2 2332 2  3668888776

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.79  E-value=4.4e-07  Score=84.11  Aligned_cols=144  Identities=10%  Similarity=0.034  Sum_probs=87.4

Q ss_pred             ccCCCCCCcEEEecCCccccccchhhccCCCCCeEecCCcccCCcccccccCCCCCcEEEccCCcccccccccccCCCCC
Q 048333          246 STGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQL  325 (413)
Q Consensus       246 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L  325 (413)
                      .+..+..++.+.+... +.......+..+..|+.+.+..+ +......++..+.+|+.+.+..+ +.......|..|.+|
T Consensus       212 ~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L  288 (379)
T 4h09_A          212 GFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNL  288 (379)
T ss_dssp             TTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTC
T ss_pred             ccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccc
Confidence            3445566677766543 22333445677778888887654 44344566777788888887543 443445677788888


Q ss_pred             CEEECCCCcCcceechhHhhhcccCCCeeeccCccccccceeeeccccccccccceeeeccCCCCCCcc-hHhhcCC
Q 048333          326 VVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLTKFP-NFLENQN  401 (413)
Q Consensus       326 ~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~-~~~~~l~  401 (413)
                      +.+.+.++.+. .++ ..+|.+|.+|+.+++..+ ++.++...+.     .|.+|+.+.+..+ ++.+. ..|.+|+
T Consensus       289 ~~i~l~~~~i~-~I~-~~aF~~c~~L~~i~lp~~-l~~I~~~aF~-----~C~~L~~i~ip~~-v~~I~~~aF~~c~  356 (379)
T 4h09_A          289 TKVVMDNSAIE-TLE-PRVFMDCVKLSSVTLPTA-LKTIQVYAFK-----NCKALSTISYPKS-ITLIESGAFEGSS  356 (379)
T ss_dssp             CEEEECCTTCC-EEC-TTTTTTCTTCCEEECCTT-CCEECTTTTT-----TCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred             ccccccccccc-eeh-hhhhcCCCCCCEEEcCcc-ccEEHHHHhh-----CCCCCCEEEECCc-cCEEchhHhhCCC
Confidence            88888777665 333 237888888888888654 4444333322     5667777776543 44332 3344444

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.74  E-value=4.5e-08  Score=89.69  Aligned_cols=105  Identities=21%  Similarity=0.099  Sum_probs=87.2

Q ss_pred             cEEECCCC-ccccccccccccccccccccCCCCccEEeCCC-CcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCC
Q 048333          173 LHLDLSLN-ELQGEAASFRCFGELPISMGNLGSLKELDLSQ-NGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNF  250 (413)
Q Consensus       173 ~~L~l~~~-~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~  250 (413)
                      ..++.+++ .++          .+|. +..+++|+.|+|++ |.+....+..+..+++|+.|++++|.+....+..+..+
T Consensus        11 ~~v~~~~~n~l~----------~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l   79 (347)
T 2ifg_A           11 SGLRCTRDGALD----------SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFT   79 (347)
T ss_dssp             SCEECCSSCCCT----------TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSC
T ss_pred             CEEEcCCCCCCC----------ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCC
Confidence            35678877 776          3677 88889999999996 88886666789999999999999999987788888999


Q ss_pred             CCCcEEEecCCccccccchhhccCCCCCeEecCCcccCC
Q 048333          251 SSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSG  289 (413)
Q Consensus       251 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  289 (413)
                      ++|+.|++++|.+....+..+..++ |+.|++.+|.+..
T Consensus        80 ~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c  117 (347)
T 2ifg_A           80 PRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHC  117 (347)
T ss_dssp             SCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred             cCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence            9999999999998655555555555 9999999998763

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.72  E-value=9.3e-09  Score=85.08  Aligned_cols=67  Identities=13%  Similarity=0.034  Sum_probs=30.6

Q ss_pred             hhccCCCCCeEecCCc-ccCCcc----cccccCCCCCcEEEccCCccccc----ccccccCCCCCCEEECCCCcCc
Q 048333          270 SIGNFTRLQFLFLGFN-NFSGDL----LGSIGNLRSLEVIYIAKCNFSGQ----ITSSLRNLTQLVVLDMAQNSYG  336 (413)
Q Consensus       270 ~~~~~~~L~~L~l~~~-~~~~~~----~~~l~~~~~L~~L~L~~~~~~~~----~~~~~~~~~~L~~L~l~~n~~~  336 (413)
                      .+...++|++|++++| .+.+..    ...+...++|++|+|++|.+.+.    +...+...+.|++|++++|.+.
T Consensus        31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~  106 (185)
T 1io0_A           31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS  106 (185)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred             HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence            3444555666666655 554321    22233344555555555555422    2222333444555555555444

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.69  E-value=2.6e-06  Score=78.91  Aligned_cols=295  Identities=9%  Similarity=0.023  Sum_probs=166.8

Q ss_pred             CceEEEecCCCccccccCCccccccccccceeeccccCCCCCCCCccccC--cCccccC--Ccchh-hhhhcCCCCcEEE
Q 048333           43 GHVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPPEIIN--LSRLELQ--KPSFE-NLFEKLSNLKTLN  117 (413)
Q Consensus        43 ~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~--L~~L~l~--~~~i~-~~~~~~~~L~~L~  117 (413)
                      .+++.+.+... ++.....  +|..|.+|+.+++..+ +... -...+.+  +..+.+-  ...+. .+|..+ +|+.+.
T Consensus        46 ~~i~~v~ip~~-vt~Ig~~--aF~~C~~L~~I~lp~~-v~~I-g~~aF~~c~l~~i~~~~~l~~I~~~aF~~~-~L~~i~  119 (379)
T 4h09_A           46 DRISEVRVNSG-ITSIGEA--NFNSCYNMTKVTVAST-VTSI-GDGAFADTKLQSYTGMERVKKFGDYVFQGT-DLDDFE  119 (379)
T ss_dssp             GGCSEEEECTT-EEEECTT--TTTTCTTCCEEEECTT-CCEE-CTTTTTTCCCCEEEECTTCCEECTTTTTTC-CCSEEE
T ss_pred             cCCEEEEeCCC-ccChHHH--HhhCCCCCCEEEeCCc-ceEe-chhhhcCCCCceEECCceeeEeccceeccC-Cccccc
Confidence            35666666543 3322333  7888999999998654 2221 1111211  2211111  01111 123333 566666


Q ss_pred             cCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCccccccccc---ccccc
Q 048333          118 LGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASF---RCFGE  194 (413)
Q Consensus       118 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~---~~~~~  194 (413)
                      +.++-. .....++.++ .|+.+.+... ++           ..-...+..+..++.+.+............   .....
T Consensus       120 lp~~~~-~i~~~~F~~~-~l~~~~~~~~-v~-----------~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  185 (379)
T 4h09_A          120 FPGATT-EIGNYIFYNS-SVKRIVIPKS-VT-----------TIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKT  185 (379)
T ss_dssp             CCTTCC-EECTTTTTTC-CCCEEEECTT-CC-----------EECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSS
T ss_pred             CCCccc-cccccccccc-eeeeeeccce-ee-----------ccccchhcccccccccccccccceeecccceecccccc
Confidence            654321 1122233333 3444444322 11           112234556677777766544322111000   00011


Q ss_pred             ccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccC
Q 048333          195 LPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNF  274 (413)
Q Consensus       195 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~  274 (413)
                      ....+..+..+..+.+..... .....++..+.+|+.+.+..+- .......+..+..|+.+.+..+ +.......|..+
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~-~i~~~~f~~~~~l~~i~~~~~~-~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~  262 (379)
T 4h09_A          186 ILESYPAAKTGTEFTIPSTVK-TVTAYGFSYGKNLKKITITSGV-TTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNC  262 (379)
T ss_dssp             EEEECCTTCCCSEEECCTTCC-EECTTTTTTCSSCSEEECCTTC-CEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTC
T ss_pred             eecccccccccccccccccee-EEeecccccccccceeeeccce-eEEccccccCCccceEEEcCCC-ccEeCcccccee
Confidence            222344455666666544322 1334556677888888886553 2245556778889999999765 434445668888


Q ss_pred             CCCCeEecCCcccCCcccccccCCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcceechhHhhhcccCCCee
Q 048333          275 TRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEAL  354 (413)
Q Consensus       275 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L  354 (413)
                      .+|+.+.+..+ +......++..+++|+.+.+.++.++.....+|.+|.+|+.+.+..+ +. .+. ..+|.+|.+|+.+
T Consensus       263 ~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~-~~aF~~C~~L~~i  338 (379)
T 4h09_A          263 TALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LK-TIQ-VYAFKNCKALSTI  338 (379)
T ss_dssp             TTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CC-EEC-TTTTTTCTTCCCC
T ss_pred             ehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-cc-EEH-HHHhhCCCCCCEE
Confidence            99999998654 44455667888999999999888887556778999999999999755 33 444 3489999999999


Q ss_pred             eccCccccccc
Q 048333          355 DISLNRSSVLT  365 (413)
Q Consensus       355 ~l~~~~i~~l~  365 (413)
                      .+..+ ++.++
T Consensus       339 ~ip~~-v~~I~  348 (379)
T 4h09_A          339 SYPKS-ITLIE  348 (379)
T ss_dssp             CCCTT-CCEEC
T ss_pred             EECCc-cCEEc
Confidence            99754 44443

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.67  E-value=6.2e-09  Score=86.17  Aligned_cols=125  Identities=15%  Similarity=0.180  Sum_probs=77.8

Q ss_pred             hhhhhhcCCCCcEEEcCCc-cCCC----CcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEEC
Q 048333          103 FENLFEKLSNLKTLNLGDV-SIDS----TIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDL  177 (413)
Q Consensus       103 i~~~~~~~~~L~~L~l~~~-~~~~----~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l  177 (413)
                      +...+...+.|++|++++| .+..    .+...+...++|++|++++|.+.+...       ..+...+...+.|++|++
T Consensus        28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~-------~~l~~~L~~n~~L~~L~L  100 (185)
T 1io0_A           28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVA-------FALAEMLKVNNTLKSLNV  100 (185)
T ss_dssp             HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHH-------HHHHHHHHHCSSCCEEEC
T ss_pred             HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHH-------HHHHHHHHhCCCcCEEEC
Confidence            4455677888888888888 7753    234455667788888888887764211       112334455677888888


Q ss_pred             CCCccccccccccccccccccccCCCCccEEeC--CCCcCCCc----chhhhhCCCCCCEEEccCCcC
Q 048333          178 SLNELQGEAASFRCFGELPISMGNLGSLKELDL--SQNGFFGE----LPTSIRNLFSLEKLDLSFNKL  239 (413)
Q Consensus       178 ~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l--~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~  239 (413)
                      ++|.|++....     .+...+...+.|++|++  ++|.+...    +...+...++|++|++++|.+
T Consensus       101 ~~N~i~~~g~~-----~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i  163 (185)
T 1io0_A          101 ESNFISGSGIL-----ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  163 (185)
T ss_dssp             CSSCCCHHHHH-----HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             cCCcCCHHHHH-----HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence            88877764321     13445566667777777  66766532    233444556666666666654

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.43  E-value=1.4e-07  Score=76.19  Aligned_cols=83  Identities=12%  Similarity=0.147  Sum_probs=37.9

Q ss_pred             CCcEEEecCCccccccchhhccCCCCCeEecCCcc-cCCcccccccCC----CCCcEEEccCCc-ccccccccccCCCCC
Q 048333          252 SLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNN-FSGDLLGSIGNL----RSLEVIYIAKCN-FSGQITSSLRNLTQL  325 (413)
Q Consensus       252 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~~----~~L~~L~L~~~~-~~~~~~~~~~~~~~L  325 (413)
                      .|+.|++++|.+++.....+..+++|++|++++|. +++.....++..    ++|+.|++++|. +++.....+..+++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            45555555555444433444455555555555552 443333333332    245555555542 443323333444555


Q ss_pred             CEEECCCCc
Q 048333          326 VVLDMAQNS  334 (413)
Q Consensus       326 ~~L~l~~n~  334 (413)
                      ++|++++|.
T Consensus       142 ~~L~L~~c~  150 (176)
T 3e4g_A          142 KYLFLSDLP  150 (176)
T ss_dssp             CEEEEESCT
T ss_pred             CEEECCCCC
Confidence            555555443

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.38  E-value=1.2e-07  Score=76.55  Aligned_cols=35  Identities=6%  Similarity=0.056  Sum_probs=16.7

Q ss_pred             CCcEEEccCCcccccccccccCCCCCCEEECCCCc
Q 048333          300 SLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNS  334 (413)
Q Consensus       300 ~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~  334 (413)
                      .|+.|++++|.+++.....+..|++|++|++++|.
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~   96 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCH   96 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCT
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCC
Confidence            34455555554443333334445555555555553

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.02  E-value=8.6e-07  Score=77.05  Aligned_cols=30  Identities=27%  Similarity=0.287  Sum_probs=14.1

Q ss_pred             CccEEeCCCCcCCCcch-------hhhhCCCCCCEEE
Q 048333          204 SLKELDLSQNGFFGELP-------TSIRNLFSLEKLD  233 (413)
Q Consensus       204 ~L~~L~l~~~~~~~~~~-------~~l~~~~~L~~L~  233 (413)
                      +|++|++++|.+...+|       ..+..+|+|+.|+
T Consensus       221 ~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          221 KLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD  257 (267)
T ss_dssp             CCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred             CcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence            45555555555432221       2344556665554

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.01  E-value=8.8e-06  Score=70.68  Aligned_cols=82  Identities=20%  Similarity=0.225  Sum_probs=46.2

Q ss_pred             cCCCCCCEEECCCCcCcceechhHhhhcccCCCeeeccCccccccceeeecccccc-ccccceeeeccCCCCC-Ccc---
Q 048333          320 RNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDT-TSQKIQYRGLRSCNLT-KFP---  394 (413)
Q Consensus       320 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~-~~~~L~~L~l~~~~l~-~l~---  394 (413)
                      ..+++|+.|+|++|.+.+...+...+..+++|+.|+|++|.++.+++.     ..+ .+ +|++|++++|.++ .+|   
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l-----~~l~~l-~L~~L~L~~Npl~~~~~~~~  240 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSEREL-----DKIKGL-KLEELWLDGNSLCDTFRDQS  240 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGG-----GGGTTS-CCSEEECTTSTTGGGCSSHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhh-----hhcccC-CcceEEccCCcCccccCcch
Confidence            345666666666666654333222455666666667766665544211     111 12 5677777777665 233   


Q ss_pred             ----hHhhcCCCCcEEe
Q 048333          395 ----NFLENQNHLVILN  407 (413)
Q Consensus       395 ----~~~~~l~~L~~L~  407 (413)
                          ..+..+|+|+.||
T Consensus       241 ~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          241 TYISAIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHHHHHCTTCCEES
T ss_pred             hHHHHHHHHCcccCeEC
Confidence                3466777777776

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.76  E-value=1.6e-05  Score=65.29  Aligned_cols=124  Identities=19%  Similarity=0.179  Sum_probs=78.2

Q ss_pred             hhhhhhcCCCCcEEEcCCc-cCCC----CcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEEC
Q 048333          103 FENLFEKLSNLKTLNLGDV-SIDS----TIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDL  177 (413)
Q Consensus       103 i~~~~~~~~~L~~L~l~~~-~~~~----~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l  177 (413)
                      +...+..-+.|++|+|+++ .+..    .+...+..-..|++|+|++|.+.+...       ..+...+...+.|+.|++
T Consensus        33 l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga-------~alA~aL~~N~tL~~L~L  105 (197)
T 1pgv_A           33 INRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEA-------RGLIELIETSPSLRVLNV  105 (197)
T ss_dssp             HHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHH-------TTHHHHHHHCSSCCEEEC
T ss_pred             HHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHH-------HHHHHHHhcCCccCeEec
Confidence            3444666788999999875 6643    234455566778888888888775322       233445556678888888


Q ss_pred             CCCccccccccccccccccccccCCCCccEEeCCCCc---CCC----cchhhhhCCCCCCEEEccCCc
Q 048333          178 SLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNG---FFG----ELPTSIRNLFSLEKLDLSFNK  238 (413)
Q Consensus       178 ~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---~~~----~~~~~l~~~~~L~~L~l~~~~  238 (413)
                      ++|.|++....     .+...+...+.|++|+++++.   +..    .+..++..-+.|+.|+++.+.
T Consensus       106 ~~N~Ig~~Ga~-----ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          106 ESNFLTPELLA-----RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  168 (197)
T ss_dssp             CSSBCCHHHHH-----HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             CCCcCCHHHHH-----HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence            88888765432     234456666678888887542   222    233445555667777766543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.70  E-value=4.5e-05  Score=62.64  Aligned_cols=89  Identities=15%  Similarity=0.095  Sum_probs=48.1

Q ss_pred             hccCCCCCeEecCCc-ccCCc----ccccccCCCCCcEEEccCCccccc----ccccccCCCCCCEEECCCCcCcceec-
Q 048333          271 IGNFTRLQFLFLGFN-NFSGD----LLGSIGNLRSLEVIYIAKCNFSGQ----ITSSLRNLTQLVVLDMAQNSYGGTVE-  340 (413)
Q Consensus       271 ~~~~~~L~~L~l~~~-~~~~~----~~~~l~~~~~L~~L~L~~~~~~~~----~~~~~~~~~~L~~L~l~~n~~~~~~~-  340 (413)
                      +..-+.|+.|+++++ .+.+.    +..++..-+.|+.|+|++|.+.+.    +...+...+.|+.|+|++|.+.+... 
T Consensus        37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~  116 (197)
T 1pgv_A           37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA  116 (197)
T ss_dssp             HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred             HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence            444566777777764 55432    233444556677777777766532    33344455666666666666653221 


Q ss_pred             -hhHhhhcccCCCeeeccCc
Q 048333          341 -LDVLLTSWKNLEALDISLN  359 (413)
Q Consensus       341 -~~~~~~~~~~L~~L~l~~~  359 (413)
                       +...+.....|++|+++++
T Consensus       117 ala~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          117 RLLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HHHHHTTTTCCCSEEECCCC
T ss_pred             HHHHHHhhCCceeEEECCCC
Confidence             1223444455666666544

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=95.92  E-value=0.012  Score=44.80  Aligned_cols=33  Identities=27%  Similarity=0.274  Sum_probs=14.5

Q ss_pred             ceeeeccCCCCCCcc-hHhhcCCCCcEEeCCCCC
Q 048333          380 IQYRGLRSCNLTKFP-NFLENQNHLVILNLSDNR  412 (413)
Q Consensus       380 L~~L~l~~~~l~~l~-~~~~~l~~L~~L~l~~n~  412 (413)
                      |++|+|++|.|+.+| ..|..+++|+.|+|.+|+
T Consensus        33 l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP   66 (130)
T 3rfe_A           33 TTELVLTGNNLTALPPGLLDALPALRTAHLGANP   66 (130)
T ss_dssp             CSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred             CCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence            444444444444443 223444444444444443

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=95.37  E-value=0.043  Score=41.69  Aligned_cols=37  Identities=16%  Similarity=0.149  Sum_probs=22.8

Q ss_pred             CCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcc
Q 048333          111 SNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCEL  147 (413)
Q Consensus       111 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l  147 (413)
                      ++|++|+|++|.++...+..|..+++|++|+|.+|.+
T Consensus        31 ~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            3566666666666654445556666666666666654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	413
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-12
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	9e-06
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	9e-06
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-05
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	7e-04
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-12
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-11
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-10
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	6e-07
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	9e-07
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	7e-11
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-09
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-08
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-04
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-07
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	5e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	2e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	9e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.001
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.004

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 64.8 bits (156), Expect = 3e-12
 Identities = 63/290 (21%), Positives = 104/290 (35%), Gaps = 46/290 (15%)

Query: 16  PTMASWKPEEGSVDC--YSWDVVHCNKNTG--HVIKLNLSHGCLFGSINSSSSLFKLVHL 71
            T++SW P   + DC   +W  V C+ +T    V  L+LS   L       SSL  L +L
Sbjct: 22  TTLSSWLP---TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYL 78

Query: 72  KWLNLALNDFNSSEIPPEIINLSRLELQKPSF-------ENLFEKLSNLKTLNLGDVSID 124
            +L +   +     IPP I  L++L     +         +   ++  L TL+    ++ 
Sbjct: 79  NFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALS 138

Query: 125 STIPHNIKNLSSLTFVSLRNCEL---------------------------QAMCSFFLIQ 157
            T+P +I +L +L  ++     +                           +   +F  + 
Sbjct: 139 GTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN 198

Query: 158 ISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFG 217
           ++    S          L  S    Q    +          +G   +L  LDL  N  +G
Sbjct: 199 LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYG 258

Query: 218 ELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRS----CGF 263
            LP  +  L  L  L++SFN L GE P   GN     +    +    CG 
Sbjct: 259 TLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGS 307

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 44.7 bits (104), Expect = 9e-06
 Identities = 50/252 (19%), Positives = 81/252 (32%), Gaps = 17/252 (6%)

Query: 164 SSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFF-GELPTS 222
            +     ++ +LDLS   L            +P S+ NL  L  L +       G +P +
Sbjct: 44  DTDTQTYRVNNLDLSGLNLPKP-------YPIPSSLANLPYLNFLYIGGINNLVGPIPPA 96

Query: 223 IRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFL 282
           I  L  L  L ++   +SG  P       +L  L+         +P SI +   L  +  
Sbjct: 97  IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITF 156

Query: 283 GFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELD 342
             N  SG +  S G+   L        N              L  +D+++N   G   + 
Sbjct: 157 DGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVL 216

Query: 343 VLLTSWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLT-KFPNFLENQN 401
                      L  +           FD      S+ +    LR+  +    P  L    
Sbjct: 217 FGSDKNTQKIHLAKNSLA--------FDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLK 268

Query: 402 HLVILNLSDNRI 413
            L  LN+S N +
Sbjct: 269 FLHSLNVSFNNL 280

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 44.7 bits (104), Expect = 9e-06
 Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 1/52 (1%)

Query: 193 GELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFP 244
           G LP  +  L  L  L++S N   GE+P    NL   +    + NK     P
Sbjct: 258 GTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 43.2 bits (100), Expect = 3e-05
 Identities = 18/64 (28%), Positives = 24/64 (37%), Gaps = 10/64 (15%)

Query: 157 QISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFF 216
           +I G +P  L  L  L  L++S N L          GE+P   GNL        + N   
Sbjct: 255 RIYGTLPQGLTQLKFLHSLNVSFNNLC---------GEIP-QGGNLQRFDVSAYANNKCL 304

Query: 217 GELP 220
              P
Sbjct: 305 CGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 39.0 bits (89), Expect = 7e-04
 Identities = 51/277 (18%), Positives = 97/277 (35%), Gaps = 47/277 (16%)

Query: 109 KLSNLKTLNLGDVSI--DSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSL 166
           +   +  L+L  +++     IP ++ NL  L F+ +               + G IP ++
Sbjct: 48  QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGI----------NNLVGPIPPAI 97

Query: 167 GNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNL 226
             L++L +L ++              G +P  +  + +L  LD S N   G LP SI +L
Sbjct: 98  AKLTQLHYLYITHT---------NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL 148

Query: 227 FSLEKLDLSFNKLSGEFPWSTGNFSSL-----------------------KLLNLRSCGF 263
            +L  +    N++SG  P S G+FS L                             S   
Sbjct: 149 PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNM 208

Query: 264 WSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLT 323
                  +    +         N     LG +G  ++L  + +      G +   L  L 
Sbjct: 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLK 268

Query: 324 QLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNR 360
            L  L+++ N+  G +       + +  +    + N+
Sbjct: 269 FLHSLNVSFNNLCGEIP---QGGNLQRFDVSAYANNK 302

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 64.3 bits (155), Expect = 7e-12
 Identities = 41/206 (19%), Positives = 74/206 (35%), Gaps = 28/206 (13%)

Query: 66  FKLVHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENL--FEKLSNLKTLNLGDVSI 123
            KL +L+ L    N  +       + NL  L L     +++     L+NL  L+L +  I
Sbjct: 194 AKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQI 253

Query: 124 DSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQIS---------GRIPSSLGNLSKLLH 174
            +  P  +  L+ LT + L   ++  +     +                S + NL  L +
Sbjct: 254 SNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTY 311

Query: 175 LDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDL 234
           L L  N +                + +L  L+ L  + N       +S+ NL ++  L  
Sbjct: 312 LTLYFNNISD-----------ISPVSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSA 358

Query: 235 SFNKLSGEFPWSTGNFSSLKLLNLRS 260
             N++S   P    N + +  L L  
Sbjct: 359 GHNQISDLTPL--ANLTRITQLGLND 382

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 61.6 bits (148), Expect = 5e-11
 Identities = 42/179 (23%), Positives = 67/179 (37%), Gaps = 21/179 (11%)

Query: 155 LIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNG 214
           L     +   +L +L+ L  LDL+ N++                +  L  L EL L  N 
Sbjct: 226 LNGNQLKDIGTLASLTNLTDLDLANNQISN-----------LAPLSGLTKLTELKLGANQ 274

Query: 215 FFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNF 274
                P  +  L +L  L+L+ N+   E      N  +L  L L         P  + + 
Sbjct: 275 ISNISP--LAGLTALTNLELNENQ--LEDISPISNLKNLTYLTLYFNNISDISP--VSSL 328

Query: 275 TRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQN 333
           T+LQ LF   N  S   + S+ NL ++  +       S      L NLT++  L +   
Sbjct: 329 TKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLT--PLANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 60.0 bits (144), Expect = 1e-10
 Identities = 51/203 (25%), Positives = 77/203 (37%), Gaps = 27/203 (13%)

Query: 157 QISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFF 216
           QIS   P     L+ L  L L+ N+L+              ++ +L +L +LDL+ N   
Sbjct: 208 QISDITPLG--ILTNLDELSLNGNQLKD-----------IGTLASLTNLTDLDLANNQIS 254

Query: 217 GELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTR 276
              P  +  L  L +L L  N++S   P          L NL       +    I N   
Sbjct: 255 NLAP--LSGLTKLTELKLGANQISNISPL----AGLTALTNLELNENQLEDISPISNLKN 308

Query: 277 LQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYG 336
           L +L L FNN S   +  + +L  L+ ++ A    S    SSL NLT +  L    N   
Sbjct: 309 LTYLTLYFNNISD--ISPVSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQIS 364

Query: 337 GTVELDVLLTSWKNLEALDISLN 359
               L  L      +  L ++  
Sbjct: 365 DLTPLANL----TRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 48.8 bits (115), Expect = 6e-07
 Identities = 61/361 (16%), Positives = 124/361 (34%), Gaps = 45/361 (12%)

Query: 74  LNLALNDFNSSEIPPEIINLSRLELQKPSFENL--FEKLSNLKTLNLGDVSIDSTIPHNI 131
             L   +   +    ++  ++ L+  +   +++   E L+NL  +N  +  +    P  +
Sbjct: 27  TVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--L 84

Query: 132 KNLSSLTFVS-------------------LRNCELQAMCSFFLIQISGRIPSSLGNLSKL 172
           KNL+ L  +                            +     ++    +     + + +
Sbjct: 85  KNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTI 144

Query: 173 LHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKL 232
             +         +  SF         + NL +L+ LD+S N        +   L +LE L
Sbjct: 145 SDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLA--KLTNLESL 202

Query: 233 DLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLL 292
             + N++S   P      ++L  L+L           ++ + T L  L L  N  S   L
Sbjct: 203 IATNNQISDITPLG--ILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISN--L 256

Query: 293 GSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLE 352
             +  L  L  + +     S      L  LT L  L++ +N       +  L    KNL 
Sbjct: 257 APLSGLTKLTELKLGANQISNIS--PLAGLTALTNLELNENQLEDISPISNL----KNLT 310

Query: 353 ALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLTKFPNFLENQNHLVILNLSDNR 412
            L +  N  S ++  +       +  K+Q     +  ++   + L N  ++  L+   N+
Sbjct: 311 YLTLYFNNISDISPVS-------SLTKLQRLFFANNKVSDVSS-LANLTNINWLSAGHNQ 362

Query: 413 I 413
           I
Sbjct: 363 I 363

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 48.5 bits (114), Expect = 9e-07
 Identities = 56/354 (15%), Positives = 117/354 (33%), Gaps = 25/354 (7%)

Query: 58  SINSSSSLFKLVHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENLFEKLSNLKTLN 117
            I S   +  L +L  +N + N          + NL++L     +   + +        N
Sbjct: 55  GIKSIDGVEYLNNLTQINFSNNQLTD---ITPLKNLTKLVDILMNNNQIADITPLANLTN 111

Query: 118 LGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDL 177
           L  +++ +    +I  L +LT ++        +     +     +              L
Sbjct: 112 LTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPL 171

Query: 178 SLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFN 237
           +                    +  L +L+ L  + N      P  I    +L++L L+ N
Sbjct: 172 ANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILT--NLDELSLNGN 229

Query: 238 KLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGN 297
           +L      +  + ++L  L+L +    +  P  +   T+L  L LG N  S   +  +  
Sbjct: 230 QLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN--ISPLAG 283

Query: 298 LRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDIS 357
           L +L  + + +            NL  L  L +  N+      +    +S   L+ L  +
Sbjct: 284 LTALTNLELNENQLEDISPI--SNLKNLTYLTLYFNNISDISPV----SSLTKLQRLFFA 337

Query: 358 LNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLTKFPNFLENQNHLVILNLSDN 411
            N+ S ++       +      I +       ++     L N   +  L L+D 
Sbjct: 338 NNKVSDVS-------SLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQ 383

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 60.4 bits (145), Expect = 7e-11
 Identities = 42/264 (15%), Positives = 87/264 (32%), Gaps = 18/264 (6%)

Query: 84  SEIPPEI-INLSRLELQKPSFENL----FEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLT 138
            ++P ++  + + L+LQ      +    F+ L NL TL L +  I    P     L  L 
Sbjct: 23  EKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLE 82

Query: 139 FVSLRNCELQAMCSFFLIQISGRIPSSLGNLS---KLLHLDLSLNELQGEAASFRCFGEL 195
            + L   +L+ +       +                + +    +  ++      +  G  
Sbjct: 83  RLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIE 142

Query: 196 PISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKL 255
             +   +  L  + ++       +P  +    SL +L L  NK++     S    ++L  
Sbjct: 143 NGAFQGMKKLSYIRIADTN-ITTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAK 199

Query: 256 LNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSG-- 313
           L L      +    S+ N   L+ L L  N       G + + + ++V+Y+   N S   
Sbjct: 200 LGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV-PGGLADHKYIQVVYLHNNNISAIG 258

Query: 314 ----QITSSLRNLTQLVVLDMAQN 333
                             + +  N
Sbjct: 259 SNDFCPPGYNTKKASYSGVSLFSN 282

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 55.8 bits (133), Expect = 3e-09
 Identities = 51/253 (20%), Positives = 84/253 (33%), Gaps = 22/253 (8%)

Query: 161 RIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELP 220
           ++P  L        LDL  N++                  NL +L  L L  N      P
Sbjct: 24  KVPKDLP--PDTALLDLQNNKITEI---------KDGDFKNLKNLHTLILINNKISKISP 72

Query: 221 TSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFL 280
            +   L  LE+L LS N+L             L++           V + +     +  L
Sbjct: 73  GAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVV-EL 131

Query: 281 FLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVE 340
                  SG   G+   ++ L  I IA  N +        +LT+   L +  N       
Sbjct: 132 GTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTE---LHLDGNKITKV-- 186

Query: 341 LDVLLTSWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLTKFPNFLENQ 400
               L    NL  L +S N       +  D  +   +  ++   L +  L K P  L + 
Sbjct: 187 DAASLKGLNNLAKLGLSFNS-----ISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADH 241

Query: 401 NHLVILNLSDNRI 413
            ++ ++ L +N I
Sbjct: 242 KYIQVVYLHNNNI 254

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 53.1 bits (126), Expect = 2e-08
 Identities = 54/303 (17%), Positives = 95/303 (31%), Gaps = 49/303 (16%)

Query: 111 SNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLS 170
            +   L+L +  I      + KNL +L  + L N            +IS   P +   L 
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN-----------KISKISPGAFAPLV 79

Query: 171 KLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLE 230
           KL  L LS N+L+                      +EL + +N       +    L  + 
Sbjct: 80  KLERLYLSKNQLKELPEKMPKTL------------QELRVHENEITKVRKSVFNGLNQMI 127

Query: 231 KLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGD 290
            ++L  N L        G F  +K L+       +      G    L  L L  N  +  
Sbjct: 128 VVELGTNPLK-SSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKV 186

Query: 291 LLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKN 350
              S+  L +L  + ++  + S     SL N   L  L +   +    V++   L   K 
Sbjct: 187 DAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHL---NNNKLVKVPGGLADHKY 243

Query: 351 LEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLTKFPNFLENQNHLVILNLSD 410
           ++ + +  N  S +    F                        P +   +     ++L  
Sbjct: 244 IQVVYLHNNNISAIGSNDFC----------------------PPGYNTKKASYSGVSLFS 281

Query: 411 NRI 413
           N +
Sbjct: 282 NPV 284

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.8 bits (94), Expect = 2e-04
 Identities = 34/246 (13%), Positives = 78/246 (31%), Gaps = 38/246 (15%)

Query: 47  KLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNS--SEIPPEIINLSRLELQKPS-F 103
            L L +  +      +     LV L+ L L+ N       ++P  +  L   E +     
Sbjct: 59  TLILINNKISKISPGA--FAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVR 116

Query: 104 ENLFEKLSNLKTLNLGDVSIDST--IPHNIKNLSSLTFVSLRNCELQAMCSFFL------ 155
           +++F  L+ +  + LG   + S+       + +  L+++ + +  +  +           
Sbjct: 117 KSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTEL 176

Query: 156 ----IQISGRIPSSLGNLSKLLHLDLSLNELQGE--------------AASFRCFGELPI 197
                +I+    +SL  L+ L  L LS N +                   +     ++P 
Sbjct: 177 HLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPG 236

Query: 198 SMGNLGSLKELDLSQNGFFG------ELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFS 251
            + +   ++ + L  N            P       S   + L  N +   +      F 
Sbjct: 237 GLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ-YWEIQPSTFR 295

Query: 252 SLKLLN 257
            + +  
Sbjct: 296 CVYVRA 301

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.4 bits (116), Expect = 3e-07
 Identities = 47/250 (18%), Positives = 81/250 (32%), Gaps = 22/250 (8%)

Query: 111 SNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLS 170
           +  + + L    I      + +   +LT + L +  L  + +     ++      L + +
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 171 KLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLE 230
           +L  +D                   P +   LG L  L L + G     P   R L +L+
Sbjct: 92  QLRSVD-------------------PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQ 132

Query: 231 KLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGD 290
            L L  N L      +  +  +L  L L      S    +      L  L L  N  +  
Sbjct: 133 YLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV 192

Query: 291 LLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKN 350
              +  +L  L  +Y+   N S   T +L  L  L  L +  N +        L   W  
Sbjct: 193 HPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPL---WAW 249

Query: 351 LEALDISLNR 360
           L+    S + 
Sbjct: 250 LQKFRGSSSE 259

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (92), Expect = 3e-04
 Identities = 38/209 (18%), Positives = 65/209 (31%), Gaps = 7/209 (3%)

Query: 204 SLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGF 263
           + + + L  N        S R   +L  L L  N L+     +    + L+ L+L     
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 264 WSKV-PHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNL 322
              V P +     RL  L L          G    L +L+ +Y+           + R+L
Sbjct: 93  LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDL 152

Query: 323 TQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQY 382
             L  L +  N        +       +L+ L +  NR + +    F        + +  
Sbjct: 153 GNLTHLFLHGNRISSV--PERAFRGLHSLDRLLLHQNRVAHVHPHAFR----DLGRLMTL 206

Query: 383 RGLRSCNLTKFPNFLENQNHLVILNLSDN 411
               +         L     L  L L+DN
Sbjct: 207 YLFANNLSALPTEALAPLRALQYLRLNDN 235

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 44.8 bits (104), Expect = 1e-05
 Identities = 21/131 (16%), Positives = 36/131 (27%), Gaps = 3/131 (2%)

Query: 7   FYAWKFDCRPTMASWKPEEGSVDCYSWDVVHCNKNTGHVIKLNLSHGCLFGSINSSSSLF 66
                                    ++  V  N  +G        +     S    S   
Sbjct: 222 LPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCD 281

Query: 67  KLVHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENLFEKLSNLKTLNLGDVSIDST 126
               L+ LN++ N     E+P     L RL         + E   NLK L++    +   
Sbjct: 282 LPPSLEELNVSNNKL--IELPALPPRLERLIASFNHLAEVPELPQNLKQLHVEYNPL-RE 338

Query: 127 IPHNIKNLSSL 137
            P   +++  L
Sbjct: 339 FPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.3 bits (95), Expect = 1e-04
 Identities = 27/114 (23%), Positives = 43/114 (37%), Gaps = 18/114 (15%)

Query: 144 NCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLG 203
                    ++L   S  I S       L  L++S N+L           ELP       
Sbjct: 258 GLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI----------ELP---ALPP 304

Query: 204 SLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLN 257
            L+ L  S N    E+P   +N   L++L + +N L  EFP    +   L++ +
Sbjct: 305 RLERLIASFN-HLAEVPELPQN---LKQLHVEYNPLR-EFPDIPESVEDLRMNS 353

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (103), Expect = 1e-05
 Identities = 32/181 (17%), Positives = 60/181 (33%), Gaps = 2/181 (1%)

Query: 111 SNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLS 170
            +   L+L +  + +     +   + LT ++L   EL  +     + + G +  S   L 
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQ 90

Query: 171 KLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLE 230
            L  L  +L  L     SF     LP+         +    +      LP  +       
Sbjct: 91  SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150

Query: 231 KL-DLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSG 289
           +   L+ N L+           +L  L L+    ++ +P        L F FL  N +  
Sbjct: 151 EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGNPWLC 209

Query: 290 D 290
           +
Sbjct: 210 N 210

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (90), Expect = 4e-04
 Identities = 13/67 (19%), Positives = 22/67 (32%), Gaps = 3/67 (4%)

Query: 198 SMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLN 257
            +  + S  E++  +      LP  +        L LS N L      +   ++ L  LN
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 258 LRSCGFW 264
           L      
Sbjct: 62  LDRAELT 68

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (90), Expect = 5e-04
 Identities = 34/241 (14%), Positives = 67/241 (27%), Gaps = 29/241 (12%)

Query: 165 SLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIR 224
            +  ++  L ++     L            LP  +        L LS+N  +     ++ 
Sbjct: 5   EVSKVASHLEVNCDKRNLT----------ALPPDLPK--DTTILHLSENLLYTFSLATLM 52

Query: 225 NLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGF 284
               L +L+L       E      + +   L  L       +    +G       +    
Sbjct: 53  PYTRLTQLNLD----RAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS 108

Query: 285 NNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVL 344
            N    L                K N    +   L   T  +      N+    +   + 
Sbjct: 109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGL- 167

Query: 345 LTSWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLR------SCNLTKFPNFLE 398
           L   +NL+ L +  N    + K  F       S  + +  L       +C +  F  +L+
Sbjct: 168 LNGLENLDTLLLQENSLYTIPKGFFG------SHLLPFAFLHGNPWLCNCEILYFRRWLQ 221

Query: 399 N 399
           +
Sbjct: 222 D 222

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (99), Expect = 2e-05
 Identities = 26/134 (19%), Positives = 43/134 (32%), Gaps = 7/134 (5%)

Query: 201 NLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRS 260
           N    +ELDL        +      L   + +D S N++     +       LK L + +
Sbjct: 16  NAVRDRELDLRGYKI-PVIENLGATLDQFDAIDFSDNEIRKLDGFP--LLRRLKTLLVNN 72

Query: 261 CGFWSKVPHSIGNFTRLQFLFLGFNNFSG-DLLGSIGNLRSLEVIYI---AKCNFSGQIT 316
                           L  L L  N+      L  + +L+SL  + I      N      
Sbjct: 73  NRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRL 132

Query: 317 SSLRNLTQLVVLDM 330
             +  + Q+ VLD 
Sbjct: 133 YVIYKVPQVRVLDF 146

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (102), Expect = 2e-05
 Identities = 16/102 (15%), Positives = 35/102 (34%), Gaps = 17/102 (16%)

Query: 172 LLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGF----FGELPTSIRNLF 227
           +  LD+   EL                +  L   + + L   G       ++ +++R   
Sbjct: 4   IQSLDIQCEELSDAR--------WAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNP 55

Query: 228 SLEKLDLSFNKLSGEFPWSTG-----NFSSLKLLNLRSCGFW 264
           +L +L+L  N+L                  ++ L+L++C   
Sbjct: 56  ALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLT 97

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (97), Expect = 8e-05
 Identities = 19/106 (17%), Positives = 34/106 (32%), Gaps = 12/106 (11%)

Query: 112 NLKTLNLGDVSI-DSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLS 170
           ++++L++    + D+     +  L     V L +C L              I S+L    
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARC-------KDISSALRVNP 55

Query: 171 KLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFF 216
            L  L+L  NEL          G           +++L L      
Sbjct: 56  ALAELNLRSNELGDVGVHCVLQG----LQTPSCKIQKLSLQNCCLT 97

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (93), Expect = 2e-04
 Identities = 20/82 (24%), Positives = 30/82 (36%), Gaps = 10/82 (12%)

Query: 168 NLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSI---- 223
             S L  L L+  ++   + S      L  ++    SL+ELDLS N         +    
Sbjct: 367 PGSVLRVLWLADCDVSDSSCS-----SLAATLLANHSLRELDLSNNCLGDAGILQLVESV 421

Query: 224 -RNLFSLEKLDLSFNKLSGEFP 244
            +    LE+L L     S E  
Sbjct: 422 RQPGCLLEQLVLYDIYWSEEME 443

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 4e-04
 Identities = 13/92 (14%), Positives = 27/92 (29%), Gaps = 5/92 (5%)

Query: 228 SLEKLDLSFNKLSGE-FPWSTGNFSSLKLLNLRSCGF----WSKVPHSIGNFTRLQFLFL 282
            ++ LD+   +LS   +          +++ L  CG        +  ++     L  L L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 283 GFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQ 314
             N      +  +          I K +    
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (86), Expect = 0.002
 Identities = 19/107 (17%), Positives = 34/107 (31%), Gaps = 11/107 (10%)

Query: 120 DVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSL 179
           D  +        +  S L  + L +C++              + ++L     L  LDLS 
Sbjct: 354 DAGVRELCQGLGQPGSVLRVLWLADCDVSDSSC-------SSLAATLLANHSLRELDLSN 406

Query: 180 NELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNL 226
           N L           E          L++L L    +  E+   ++ L
Sbjct: 407 NCLGDAGI--LQLVESVRQ--PGCLLEQLVLYDIYWSEEMEDRLQAL 449

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.2 bits (100), Expect = 3e-05
 Identities = 36/274 (13%), Positives = 79/274 (28%), Gaps = 37/274 (13%)

Query: 44  HVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSF 103
            VI        +   +    S F++ H+                    +LS   ++  + 
Sbjct: 24  GVIAFRCPRSFMDQPLAEHFSPFRVQHM--------------------DLSNSVIEVSTL 63

Query: 104 ENLFEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNC-------------ELQAM 150
             +  + S L+ L+L  + +   I + +   S+L  ++L  C                 +
Sbjct: 64  HGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL 123

Query: 151 CSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDL 210
               L          +      +   ++   L G   + +      +       +     
Sbjct: 124 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLS 183

Query: 211 SQNGFFGELPTSIRNLFSLEKLDLSF-NKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPH 269
                  +       L  L+ L LS    +  E     G   +LK L +        +  
Sbjct: 184 DSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQL 243

Query: 270 SIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEV 303
                  LQ   +  ++F+     +IGN ++ E+
Sbjct: 244 LKEALPHLQ---INCSHFTTIARPTIGNKKNQEI 274

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.2 bits (96), Expect = 3e-05
 Identities = 21/128 (16%), Positives = 45/128 (35%), Gaps = 12/128 (9%)

Query: 206 KELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWS 265
           + L L+       +   +  L  +  LDLS N+L    P          L  L++     
Sbjct: 1   RVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPALAALRC---LEVLQASDNAL 55

Query: 266 KVPHSIGNFTRLQFLFLGFNNF-SGDLLGSIGNLRSLEVIYIAKCNFSG------QITSS 318
           +    + N  RLQ L L  N       +  + +   L ++ +   +         ++   
Sbjct: 56  ENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 115

Query: 319 LRNLTQLV 326
           L +++ ++
Sbjct: 116 LPSVSSIL 123

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.7 bits (92), Expect = 9e-05
 Identities = 23/94 (24%), Positives = 33/94 (35%), Gaps = 13/94 (13%)

Query: 162 IPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPI------------SMGNLGSLKELD 209
           +   L  L  + HLDLS N L+    +      L +             + NL  L+EL 
Sbjct: 12  VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELL 71

Query: 210 LSQNGFFG-ELPTSIRNLFSLEKLDLSFNKLSGE 242
           L  N          + +   L  L+L  N L  E
Sbjct: 72  LCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.4 bits (93), Expect = 2e-04
 Identities = 28/228 (12%), Positives = 67/228 (29%), Gaps = 24/228 (10%)

Query: 108 EKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLG 167
             L+N   +  G  ++  T+     +L  +T +S     +  +               + 
Sbjct: 16  PALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTI-------------EGVQ 60

Query: 168 NLSKLLHLDLSLNEL-----QGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTS 222
            L+ L+ L+L  N++                     + N+ ++  L   +         +
Sbjct: 61  YLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQIT 120

Query: 223 IRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFL 282
                +             +    +       L  L            + N ++L  L  
Sbjct: 121 DVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKA 180

Query: 283 GFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDM 330
             N  S   +  + +L +L  +++     S    S L N + L ++ +
Sbjct: 181 DDNKISD--ISPLASLPNLIEVHLKNNQISD--VSPLANTSNLFIVTL 224

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.3 bits (85), Expect = 0.001
 Identities = 33/204 (16%), Positives = 69/204 (33%), Gaps = 22/204 (10%)

Query: 108 EKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLG 167
           +  +     NL   S+   +      L+S+  +   N +++++               + 
Sbjct: 21  DAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQG-------------IQ 65

Query: 168 NLSKLLHLDLSLNELQGEA--ASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRN 225
            L  +  L L+ N+L      A+ +  G L +    +  L  L   +      L  +  +
Sbjct: 66  YLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGIS 125

Query: 226 LFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSI---GNFTRLQFLFL 282
             +          L       T      +L  L +          I      T+LQ L+L
Sbjct: 126 DINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYL 185

Query: 283 GFNNFSGDLLGSIGNLRSLEVIYI 306
             N+ S   L ++  L++L+V+ +
Sbjct: 186 SKNHISD--LRALAGLKNLDVLEL 207

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.1 bits (82), Expect = 0.004
 Identities = 27/204 (13%), Positives = 63/204 (30%), Gaps = 31/204 (15%)

Query: 168 NLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLF 227
             ++ +  +L    +              ++   L S+ ++  + +    +    I+ L 
Sbjct: 22  AFAETIKDNLKKKSVTD-----------AVTQNELNSIDQIIANNSDI--KSVQGIQYLP 68

Query: 228 SLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQF-------- 279
           ++ KL L+ NKL+   P +         L+       S +       +            
Sbjct: 69  NVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDIN 128

Query: 280 ------LFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQN 333
                         +  +       R  ++  ++  +        L  LT+L  L +++N
Sbjct: 129 GLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKN 188

Query: 334 SYGGTVELDVLLTSWKNLEALDIS 357
                  L  L    KNL+ L++ 
Sbjct: 189 HISDLRALAGL----KNLDVLELF 208

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	413
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.97
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.94
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.92
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.92
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.91
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.89
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.88
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.87
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.83
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.82
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.78
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.77
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.74
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.73
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.72
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.66
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.65
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.64
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.64
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.63
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.62
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.62
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.61
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.61
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.58
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.58
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.55
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.55
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.43
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.41
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.39
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.36
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.12
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.11
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.1
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.93
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.42
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.18
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.17
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.11
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.86
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.78

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.97  E-value=1.1e-30  Score=235.91  Aligned_cols=276  Identities=25%  Similarity=0.404  Sum_probs=181.9

Q ss_pred             CCCCCCCCCCCCCCCcc--cceEEeeCCC--CceEEEecCCCccccccCCccccccccccceeeccc-cCCCCCCCCccc
Q 048333           16 PTMASWKPEEGSVDCYS--WDVVHCNKNT--GHVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLAL-NDFNSSEIPPEI   90 (413)
Q Consensus        16 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~   90 (413)
                      ..+++|++   +.|||.  |.||.|+...  .+|++|+|+++.+.+..+.+..+.++++|++|++++ |.+.+. +|   
T Consensus        22 ~~l~sW~~---~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~-iP---   94 (313)
T d1ogqa_          22 TTLSSWLP---TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGP-IP---   94 (313)
T ss_dssp             GGGTTCCT---TSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESC-CC---
T ss_pred             CcCCCCCC---CCCCCCCcCCCeEEeCCCCcEEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccc-cc---
Confidence            46899987   789995  9999997533  379999999988876433333777778888888775 455433 33   


Q ss_pred             cCcCccccCCcchhhhhhcCCCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCC
Q 048333           91 INLSRLELQKPSFENLFEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLS  170 (413)
Q Consensus        91 ~~L~~L~l~~~~i~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~  170 (413)
                                    ..++++++|++|++++|++.+..+..+..++.|+++++++|.+.           +.+|..+.+++
T Consensus        95 --------------~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~-----------~~~p~~l~~l~  149 (313)
T d1ogqa_          95 --------------PAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALS-----------GTLPPSISSLP  149 (313)
T ss_dssp             --------------GGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEE-----------SCCCGGGGGCT
T ss_pred             --------------cccccccccchhhhccccccccccccccchhhhccccccccccc-----------ccCchhhccCc
Confidence                          34556677777777777766655666666666777777666654           34555566666


Q ss_pred             CccEEECCCCccccccccccccccccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCC
Q 048333          171 KLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNF  250 (413)
Q Consensus       171 ~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~  250 (413)
                      +|+.+++++|.+.+.         +|..+..+..+                       ++.+.+++|.+++..+..+..+
T Consensus       150 ~L~~l~l~~n~l~~~---------ip~~~~~l~~l-----------------------~~~l~~~~n~l~~~~~~~~~~l  197 (313)
T d1ogqa_         150 NLVGITFDGNRISGA---------IPDSYGSFSKL-----------------------FTSMTISRNRLTGKIPPTFANL  197 (313)
T ss_dssp             TCCEEECCSSCCEEE---------CCGGGGCCCTT-----------------------CCEEECCSSEEEEECCGGGGGC
T ss_pred             ccceeeccccccccc---------ccccccccccc-----------------------cccccccccccccccccccccc
Confidence            666666666655432         33344443333                       1344444444443344434333


Q ss_pred             CCCcEEEecCCccccccchhhccCCCCCeEecCCcccCCcccccccCCCCCcEEEccCCcccccccccccCCCCCCEEEC
Q 048333          251 SSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDM  330 (413)
Q Consensus       251 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l  330 (413)
                      . ...+++..+...+..+..+..+++++.+++.++.+... +..+..+++++.|++++|++++.+|..+..+++|++|++
T Consensus       198 ~-~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~-~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~L  275 (313)
T d1ogqa_         198 N-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFD-LGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNV  275 (313)
T ss_dssp             C-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCB-GGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEEC
T ss_pred             c-cccccccccccccccccccccccccccccccccccccc-ccccccccccccccCccCeecccCChHHhCCCCCCEEEC
Confidence            3 23466666655556666666677777777777776543 335666778888888888888778888888888888888


Q ss_pred             CCCcCcceechhHhhhcccCCCeeeccCcc
Q 048333          331 AQNSYGGTVELDVLLTSWKNLEALDISLNR  360 (413)
Q Consensus       331 ~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~  360 (413)
                      ++|.+++.++   .+..+++|+.+++++|+
T Consensus       276 s~N~l~g~iP---~~~~L~~L~~l~l~~N~  302 (313)
T d1ogqa_         276 SFNNLCGEIP---QGGNLQRFDVSAYANNK  302 (313)
T ss_dssp             CSSEEEEECC---CSTTGGGSCGGGTCSSS
T ss_pred             cCCcccccCC---CcccCCCCCHHHhCCCc
Confidence            8888877766   45677788888888887

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.94  E-value=1.1e-24  Score=201.77  Aligned_cols=313  Identities=20%  Similarity=0.248  Sum_probs=223.8

Q ss_pred             CCCceEEEecCCCccccccCCccccccccccceeeccccCCCCCCCCccccCcCccccCCcchhhhhhcCCCCcEEEcCC
Q 048333           41 NTGHVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENLFEKLSNLKTLNLGD  120 (413)
Q Consensus        41 ~~~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~L~~L~l~~  120 (413)
                      ...++++|+++++.+...  .  .+..+++|++|++++|+++..  +                  .++++++|++|++++
T Consensus        42 ~l~~l~~L~l~~~~I~~l--~--gl~~L~nL~~L~Ls~N~l~~l--~------------------~l~~L~~L~~L~L~~   97 (384)
T d2omza2          42 DLDQVTTLQADRLGIKSI--D--GVEYLNNLTQINFSNNQLTDI--T------------------PLKNLTKLVDILMNN   97 (384)
T ss_dssp             HHTTCCEEECCSSCCCCC--T--TGGGCTTCCEEECCSSCCCCC--G------------------GGTTCTTCCEEECCS
T ss_pred             HhCCCCEEECCCCCCCCc--c--ccccCCCCCEEeCcCCcCCCC--c------------------cccCCcccccccccc
Confidence            345789999999887642  2  578899999999999987753  2                  156677888888888


Q ss_pred             ccCCCCcCccccCCCCCcEEEccCCcccccchhhhhh-----------c-------------------ccCCCccccCCC
Q 048333          121 VSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQ-----------I-------------------SGRIPSSLGNLS  170 (413)
Q Consensus       121 ~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~-----------~-------------------~~~~~~~l~~~~  170 (413)
                      |.+.+. + .+.++++|+.|+++++.++++.......           +                   .......+....
T Consensus        98 n~i~~i-~-~l~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (384)
T d2omza2          98 NQIADI-T-PLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLT  175 (384)
T ss_dssp             SCCCCC-G-GGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCT
T ss_pred             cccccc-c-cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhcccc
Confidence            877643 2 2677788888888777765432111000           0                   000000011111


Q ss_pred             CccEEECCCCccccccccccccccccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCC
Q 048333          171 KLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNF  250 (413)
Q Consensus       171 ~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~  250 (413)
                      .........+..           ........+++++.++++++.+....+  ...+++|++|++++|.+.. + ..+..+
T Consensus       176 ~~~~~~~~~~~~-----------~~~~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~-~-~~l~~l  240 (384)
T d2omza2         176 TLERLDISSNKV-----------SDISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-I-GTLASL  240 (384)
T ss_dssp             TCCEEECCSSCC-----------CCCGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-GGGGGC
T ss_pred             cccccccccccc-----------ccccccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCC-c-chhhcc
Confidence            111111111111           223456677899999999998875433  4667899999999998863 2 357788


Q ss_pred             CCCcEEEecCCccccccchhhccCCCCCeEecCCcccCCcccccccCCCCCcEEEccCCcccccccccccCCCCCCEEEC
Q 048333          251 SSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDM  330 (413)
Q Consensus       251 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l  330 (413)
                      ++|+.+++++|.+.+..  .+..+++|++++++++.+.+.  ..+..++.++.+.+..|.+.+  ...+..+++++.|++
T Consensus       241 ~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~~~l~~~--~~~~~~~~l~~l~~~~n~l~~--~~~~~~~~~l~~L~l  314 (384)
T d2omza2         241 TNLTDLDLANNQISNLA--PLSGLTKLTELKLGANQISNI--SPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTL  314 (384)
T ss_dssp             TTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCSC--CGGGGGCTTCSEEEC
T ss_pred             cccchhccccCccCCCC--cccccccCCEeeccCcccCCC--Ccccccccccccccccccccc--ccccchhcccCeEEC
Confidence            99999999999885433  378889999999999988742  346788999999999999874  234678999999999


Q ss_pred             CCCcCcceechhHhhhcccCCCeeeccCccccccceeeeccccccccccceeeeccCCCCCCcchHhhcCCCCcEEeCCC
Q 048333          331 AQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLTKFPNFLENQNHLVILNLSD  410 (413)
Q Consensus       331 ~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~  410 (413)
                      ++|.+.+..    .+..+++|++|++++|.++.++..       ..+++|++|++++|+++.++. +.++++|+.|+|++
T Consensus       315 s~n~l~~l~----~l~~l~~L~~L~L~~n~l~~l~~l-------~~l~~L~~L~l~~N~l~~l~~-l~~l~~L~~L~L~~  382 (384)
T d2omza2         315 YFNNISDIS----PVSSLTKLQRLFFANNKVSDVSSL-------ANLTNINWLSAGHNQISDLTP-LANLTRITQLGLND  382 (384)
T ss_dssp             CSSCCSCCG----GGGGCTTCCEEECCSSCCCCCGGG-------GGCTTCCEEECCSSCCCBCGG-GTTCTTCSEEECCC
T ss_pred             CCCCCCCCc----ccccCCCCCEEECCCCCCCCChhH-------cCCCCCCEEECCCCcCCCChh-hccCCCCCEeeCCC
Confidence            999998532    467899999999999998765421       157899999999999998775 88999999999999


Q ss_pred             CC
Q 048333          411 NR  412 (413)
Q Consensus       411 n~  412 (413)
                      |.
T Consensus       383 Na  384 (384)
T d2omza2         383 QA  384 (384)
T ss_dssp             EE
T ss_pred             Cc
Confidence            84

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.92  E-value=1.1e-24  Score=195.99  Aligned_cols=250  Identities=26%  Similarity=0.376  Sum_probs=213.8

Q ss_pred             CCCcEEEcCCccCCC--CcCccccCCCCCcEEEccC-CcccccchhhhhhcccCCCccccCCCCccEEECCCCccccccc
Q 048333          111 SNLKTLNLGDVSIDS--TIPHNIKNLSSLTFVSLRN-CELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAA  187 (413)
Q Consensus       111 ~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~-~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~  187 (413)
                      .++++|+++++.+.+  .+|..++++++|++|++++ |.++           +.+|..++++++|++|++++|.+.+.  
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~-----------g~iP~~i~~L~~L~~L~Ls~N~l~~~--  116 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV-----------GPIPPAIAKLTQLHYLYITHTNVSGA--  116 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEE-----------SCCCGGGGGCTTCSEEEEEEECCEEE--
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccc-----------cccccccccccccchhhhcccccccc--
Confidence            468999999998876  4788999999999999987 6666           67899999999999999999998864  


Q ss_pred             cccccccccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCC-cEEEecCCccccc
Q 048333          188 SFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSL-KLLNLRSCGFWSK  266 (413)
Q Consensus       188 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L-~~L~l~~~~~~~~  266 (413)
                             .+..+..+..|+.+++++|.....+|..+..++.++.+++++|.+.+.+|..+..+..+ +.+.++++.+.+.
T Consensus       117 -------~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~  189 (313)
T d1ogqa_         117 -------IPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGK  189 (313)
T ss_dssp             -------CCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEE
T ss_pred             -------ccccccchhhhcccccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccccc
Confidence                   45567888999999999999888889999999999999999999987888888877775 8899999998887


Q ss_pred             cchhhccCCCCCeEecCCcccCCcccccccCCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcceechhHhhh
Q 048333          267 VPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLT  346 (413)
Q Consensus       267 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~  346 (413)
                      .+..+..+.. ..+++..+......+..+..+++++.+++.++.+.+.++ .+..+++|+.|++++|.+.+.++ . .+.
T Consensus       190 ~~~~~~~l~~-~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP-~-~l~  265 (313)
T d1ogqa_         190 IPPTFANLNL-AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLP-Q-GLT  265 (313)
T ss_dssp             CCGGGGGCCC-SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCC-G-GGG
T ss_pred             cccccccccc-ccccccccccccccccccccccccccccccccccccccc-ccccccccccccCccCeecccCC-h-HHh
Confidence            7877776654 479999888877777888889999999999999986554 57788999999999999998777 4 688


Q ss_pred             cccCCCeeeccCccccccceeeeccccccccccceeeeccCCCC
Q 048333          347 SWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNL  390 (413)
Q Consensus       347 ~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~L~~L~l~~~~l  390 (413)
                      .+++|++|+|++|+      +.+.+|....+++|+.+++++|+.
T Consensus       266 ~L~~L~~L~Ls~N~------l~g~iP~~~~L~~L~~l~l~~N~~  303 (313)
T d1ogqa_         266 QLKFLHSLNVSFNN------LCGEIPQGGNLQRFDVSAYANNKC  303 (313)
T ss_dssp             GCTTCCEEECCSSE------EEEECCCSTTGGGSCGGGTCSSSE
T ss_pred             CCCCCCEEECcCCc------ccccCCCcccCCCCCHHHhCCCcc
Confidence            99999999999999      555666544788999999999973

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=7e-23  Score=183.50  Aligned_cols=268  Identities=19%  Similarity=0.165  Sum_probs=204.6

Q ss_pred             CCCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCccccccccc
Q 048333          110 LSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASF  189 (413)
Q Consensus       110 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~  189 (413)
                      .+++++|++++|+++...+..|.++++|++|++++|.+.           ...+..|.++++|+.|++++|+++..    
T Consensus        30 ~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~-----------~i~~~~f~~l~~L~~L~l~~n~l~~l----   94 (305)
T d1xkua_          30 PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-----------KISPGAFAPLVKLERLYLSKNQLKEL----   94 (305)
T ss_dssp             CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCC-----------CBCTTTTTTCTTCCEEECCSSCCSBC----
T ss_pred             CCCCCEEECcCCcCCCcChhHhhcccccccccccccccc-----------ccchhhhhCCCccCEecccCCccCcC----
Confidence            367899999999887555557888999999999999887           33466788899999999999988743    


Q ss_pred             cccccccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCc--ccCCcccCCCCCCcEEEecCCcccccc
Q 048333          190 RCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLS--GEFPWSTGNFSSLKLLNLRSCGFWSKV  267 (413)
Q Consensus       190 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~--~~~~~~l~~~~~L~~L~l~~~~~~~~~  267 (413)
                            |..  ....++.|++..+.+....+..+.....+..+....+...  ...+..+..+++|+.+++.++.+. ..
T Consensus        95 ------~~~--~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~-~l  165 (305)
T d1xkua_          95 ------PEK--MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TI  165 (305)
T ss_dssp             ------CSS--CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SC
T ss_pred             ------ccc--hhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcc-cc
Confidence                  322  2357888888888887655666777788888888776543  234455677788999999988773 33


Q ss_pred             chhhccCCCCCeEecCCcccCCcccccccCCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcceechhHhhhc
Q 048333          268 PHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTS  347 (413)
Q Consensus       268 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~  347 (413)
                      +..  .+++|+.|++++|......+..+..++.++.|++++|.+++..+..+..+++|++|++++|.+... + . .+..
T Consensus       166 ~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~l-p-~-~l~~  240 (305)
T d1xkua_         166 PQG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV-P-G-GLAD  240 (305)
T ss_dssp             CSS--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSC-C-T-TTTT
T ss_pred             Ccc--cCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccccc-c-c-cccc
Confidence            332  357899999999988777777888889999999999999877778888899999999999988743 3 2 6788


Q ss_pred             ccCCCeeeccCccccccceeeecccccc-ccccceeeeccCCCCC--Cc-chHhhcCCCCcEE
Q 048333          348 WKNLEALDISLNRSSVLTKATFDATTDT-TSQKIQYRGLRSCNLT--KF-PNFLENQNHLVIL  406 (413)
Q Consensus       348 ~~~L~~L~l~~~~i~~l~~~~~~~~~~~-~~~~L~~L~l~~~~l~--~l-~~~~~~l~~L~~L  406 (413)
                      +++|++|++++|+|+.++...+..+... ...+|+.|++++|.+.  .+ |..|..+.....+
T Consensus       241 l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~~~~~~~~f~~~~~~~~~  303 (305)
T d1xkua_         241 HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAV  303 (305)
T ss_dssp             CSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGE
T ss_pred             ccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCccCcCCHhHhcccccCccc
Confidence            9999999999999998877666555444 6778999999999887  33 4445554444433

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.91  E-value=2.1e-22  Score=186.27  Aligned_cols=292  Identities=23%  Similarity=0.260  Sum_probs=215.6

Q ss_pred             cccccccceeeccccCCCCCCCCccccCcCccccCCcchhhhhhcCCCCcEEEcCCccCCCCcCccccCCCCCcEEEccC
Q 048333           65 LFKLVHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENLFEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRN  144 (413)
Q Consensus        65 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  144 (413)
                      ...+.+|++|+++++.+...  .                  .+..+++|++|++++|++++. +. +.++++|++|++++
T Consensus        40 ~~~l~~l~~L~l~~~~I~~l--~------------------gl~~L~nL~~L~Ls~N~l~~l-~~-l~~L~~L~~L~L~~   97 (384)
T d2omza2          40 QTDLDQVTTLQADRLGIKSI--D------------------GVEYLNNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNN   97 (384)
T ss_dssp             HHHHTTCCEEECCSSCCCCC--T------------------TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCS
T ss_pred             HHHhCCCCEEECCCCCCCCc--c------------------ccccCCCCCEEeCcCCcCCCC-cc-ccCCcccccccccc
Confidence            45667788888887766542  1                  266799999999999999854 33 88999999999999


Q ss_pred             CcccccchhhhhhcccCCCccccCCCCccEEECCCCccccccccccc------------cc-------------------
Q 048333          145 CELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRC------------FG-------------------  193 (413)
Q Consensus       145 ~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~------------~~-------------------  193 (413)
                      |.+..+             ..++++++|+.|+++++.+++.......            ..                   
T Consensus        98 n~i~~i-------------~~l~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  164 (384)
T d2omza2          98 NQIADI-------------TPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQ  164 (384)
T ss_dssp             SCCCCC-------------GGGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEES
T ss_pred             cccccc-------------ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            998732             2378899999999999887764331100            00                   


Q ss_pred             -cccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhc
Q 048333          194 -ELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIG  272 (413)
Q Consensus       194 -~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~  272 (413)
                       .....+...+.........+..  ........+++++.+.++++.+....+  ...+++|+.+++++|.+.+ . ..+.
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~-~-~~l~  238 (384)
T d2omza2         165 VTDLKPLANLTTLERLDISSNKV--SDISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-I-GTLA  238 (384)
T ss_dssp             CCCCGGGTTCTTCCEEECCSSCC--CCCGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-GGGG
T ss_pred             cchhhhhcccccccccccccccc--ccccccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCC-c-chhh
Confidence             0000111111222222222222  223456678899999999998875433  4567899999999998743 3 3578


Q ss_pred             cCCCCCeEecCCcccCCcccccccCCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcceechhHhhhcccCCC
Q 048333          273 NFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLE  352 (413)
Q Consensus       273 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~  352 (413)
                      .+++|+.+++++|.+.+.  ..+..+++|+.++++++.+++..  .+..++.++.+.++.|.+.+. .   .+..+++++
T Consensus       239 ~l~~L~~L~l~~n~l~~~--~~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~~-~---~~~~~~~l~  310 (384)
T d2omza2         239 SLTNLTDLDLANNQISNL--APLSGLTKLTELKLGANQISNIS--PLAGLTALTNLELNENQLEDI-S---PISNLKNLT  310 (384)
T ss_dssp             GCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSCC-G---GGGGCTTCS
T ss_pred             cccccchhccccCccCCC--CcccccccCCEeeccCcccCCCC--ccccccccccccccccccccc-c---ccchhcccC
Confidence            889999999999998753  34778899999999999987432  367889999999999988752 2   467899999


Q ss_pred             eeeccCccccccceeeeccccccccccceeeeccCCCCCCcchHhhcCCCCcEEeCCCCCC
Q 048333          353 ALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLTKFPNFLENQNHLVILNLSDNRI  413 (413)
Q Consensus       353 ~L~l~~~~i~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i  413 (413)
                      .|++++|.++.+.+.       ..+++|++|++++|+++.++ .+.++++|+.|++++|+|
T Consensus       311 ~L~ls~n~l~~l~~l-------~~l~~L~~L~L~~n~l~~l~-~l~~l~~L~~L~l~~N~l  363 (384)
T d2omza2         311 YLTLYFNNISDISPV-------SSLTKLQRLFFANNKVSDVS-SLANLTNINWLSAGHNQI  363 (384)
T ss_dssp             EEECCSSCCSCCGGG-------GGCTTCCEEECCSSCCCCCG-GGGGCTTCCEEECCSSCC
T ss_pred             eEECCCCCCCCCccc-------ccCCCCCEEECCCCCCCCCh-hHcCCCCCCEEECCCCcC
Confidence            999999997765421       15789999999999999887 589999999999999986

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.89  E-value=1.7e-21  Score=174.35  Aligned_cols=249  Identities=19%  Similarity=0.195  Sum_probs=191.7

Q ss_pred             cccceeeccccCCCCCCCCccccCcCccccCCcchhhhhhcCCCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCccc
Q 048333           69 VHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENLFEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQ  148 (413)
Q Consensus        69 ~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~  148 (413)
                      +++++|++++|+++..  +                +..|.++++|++|++++|.+....|..|.++++|++|++++|.++
T Consensus        31 ~~l~~L~Ls~N~i~~l--~----------------~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~   92 (305)
T d1xkua_          31 PDTALLDLQNNKITEI--K----------------DGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK   92 (305)
T ss_dssp             TTCCEEECCSSCCCCB--C----------------TTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS
T ss_pred             CCCCEEECcCCcCCCc--C----------------hhHhhccccccccccccccccccchhhhhCCCccCEecccCCccC
Confidence            5789999999877642  2                124677899999999999988767788889999999999999886


Q ss_pred             ccchhhhhhcccCCCccccCCCCccEEECCCCccccccccccccccccccccCCCCccEEeCCCCcCC--CcchhhhhCC
Q 048333          149 AMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFF--GELPTSIRNL  226 (413)
Q Consensus       149 ~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~--~~~~~~l~~~  226 (413)
                      .            +|..+  .+.++.|.+.+|.+...         .+..+.....+..+....+...  ...+..+..+
T Consensus        93 ~------------l~~~~--~~~l~~L~~~~n~l~~l---------~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l  149 (305)
T d1xkua_          93 E------------LPEKM--PKTLQELRVHENEITKV---------RKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM  149 (305)
T ss_dssp             B------------CCSSC--CTTCCEEECCSSCCCBB---------CHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGC
T ss_pred             c------------Cccch--hhhhhhhhccccchhhh---------hhhhhhccccccccccccccccccCCCccccccc
Confidence            3            44432  35788899988887754         2233556667778888776543  2334567788


Q ss_pred             CCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccCCCCCeEecCCcccCCcccccccCCCCCcEEEc
Q 048333          227 FSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYI  306 (413)
Q Consensus       227 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L  306 (413)
                      ++|+.++++++.+. .++..  .+++|+.|+++++......+..+..++.+++|++++|.+....+..+..+++|++|++
T Consensus       150 ~~L~~l~l~~n~l~-~l~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L  226 (305)
T d1xkua_         150 KKLSYIRIADTNIT-TIPQG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHL  226 (305)
T ss_dssp             TTCCEEECCSSCCC-SCCSS--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEEC
T ss_pred             cccCccccccCCcc-ccCcc--cCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeec
Confidence            89999999998876 34433  3578999999999887777788889999999999999988766778888999999999


Q ss_pred             cCCcccccccccccCCCCCCEEECCCCcCcceech----hHhhhcccCCCeeeccCcccc
Q 048333          307 AKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVEL----DVLLTSWKNLEALDISLNRSS  362 (413)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~----~~~~~~~~~L~~L~l~~~~i~  362 (413)
                      ++|.++ .+|..+..+++|+.|++++|.+......    .......++|+.|++++|+++
T Consensus       227 ~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         227 NNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ  285 (305)
T ss_dssp             CSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             cccccc-ccccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCc
Confidence            999987 5677888999999999999988743210    113456788999999999864

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=7.8e-22  Score=174.63  Aligned_cols=219  Identities=20%  Similarity=0.203  Sum_probs=131.2

Q ss_pred             EcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCcccccccccccccccc
Q 048333          117 NLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELP  196 (413)
Q Consensus       117 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~  196 (413)
                      +.++++++ .+|..+  .+.+++|++++|.++.+           -+..+.++++|++|+++++.+...         .+
T Consensus        17 ~c~~~~L~-~iP~~i--p~~~~~L~Ls~N~i~~i-----------~~~~f~~l~~L~~L~ls~n~l~~i---------~~   73 (284)
T d1ozna_          17 SCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHV-----------PAASFRACRNLTILWLHSNVLARI---------DA   73 (284)
T ss_dssp             ECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEE-----------CTTTTTTCTTCCEEECCSSCCCEE---------CT
T ss_pred             EcCCCCCC-ccCCCC--CCCCCEEECcCCcCCCC-----------CHHHhhcccccccccccccccccc---------cc
Confidence            34444444 344333  13466666666666522           123455666666666666666543         12


Q ss_pred             ccccCCCCccEEeCCC-CcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccCC
Q 048333          197 ISMGNLGSLKELDLSQ-NGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFT  275 (413)
Q Consensus       197 ~~~~~l~~L~~L~l~~-~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~  275 (413)
                      ..+..+..++.+.... +.+....+..+..+++|++|+++++......+..+....+|+.++++++.+....+..|..++
T Consensus        74 ~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~  153 (284)
T d1ozna_          74 AAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLG  153 (284)
T ss_dssp             TTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             ccccccccccccccccccccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhcccc
Confidence            3344455566655443 333333345566666677777766666544455555666677777777666544455566667


Q ss_pred             CCCeEecCCcccCCcccccccCCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcceechhHhhhcccCCCeee
Q 048333          276 RLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALD  355 (413)
Q Consensus       276 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~  355 (413)
                      +|++|++++|.+....+.++..+++|+.+.+.+|.+++..+..|..+++|++|++++|.+.+..+ . .+..+++|++|+
T Consensus       154 ~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~-~-~~~~~~~L~~L~  231 (284)
T d1ozna_         154 NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPT-E-ALAPLRALQYLR  231 (284)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCH-H-HHTTCTTCCEEE
T ss_pred             chhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccc-c-ccccccccCEEE
Confidence            77777777777665555566667777777777777766666667777777777777777764333 3 566677777777


Q ss_pred             ccCcc
Q 048333          356 ISLNR  360 (413)
Q Consensus       356 l~~~~  360 (413)
                      +++|+
T Consensus       232 l~~N~  236 (284)
T d1ozna_         232 LNDNP  236 (284)
T ss_dssp             CCSSC
T ss_pred             ecCCC
Confidence            77776

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=7.6e-21  Score=168.19  Aligned_cols=208  Identities=23%  Similarity=0.209  Sum_probs=137.1

Q ss_pred             CCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCC-Cccccccccc
Q 048333          111 SNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSL-NELQGEAASF  189 (413)
Q Consensus       111 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~-~~i~~~~~~~  189 (413)
                      +.+++|+|++|.++...+..|.++++|++|+++++.+..           ..+..+.....++.+.... +.++..    
T Consensus        32 ~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~-----------i~~~~~~~~~~~~~l~~~~~~~~~~l----   96 (284)
T d1ozna_          32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLAR-----------IDAAAFTGLALLEQLDLSDNAQLRSV----   96 (284)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCE-----------ECTTTTTTCTTCCEEECCSCTTCCCC----
T ss_pred             CCCCEEECcCCcCCCCCHHHhhccccccccccccccccc-----------cccccccccccccccccccccccccc----
Confidence            345666666666654444456666666666666666552           2233344555666655433 333322    


Q ss_pred             cccccccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccch
Q 048333          190 RCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPH  269 (413)
Q Consensus       190 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~  269 (413)
                           -+..+.++++|++|++++|.+....+..+..+.+|+.+++++|.++...+..+..+++|+.|++++|.+....+.
T Consensus        97 -----~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~  171 (284)
T d1ozna_          97 -----DPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPER  171 (284)
T ss_dssp             -----CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTT
T ss_pred             -----cchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchh
Confidence                 234466666777777777666544455566667777777777777655555666777777777777777555566


Q ss_pred             hhccCCCCCeEecCCcccCCcccccccCCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcce
Q 048333          270 SIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGT  338 (413)
Q Consensus       270 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~  338 (413)
                      .|.++++|+.+++++|.+....+..|..+++|+.|++++|.+.+..+..+..+++|++|++++|.+..+
T Consensus       172 ~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~  240 (284)
T d1ozna_         172 AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD  240 (284)
T ss_dssp             TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECS
T ss_pred             hhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCC
Confidence            677778888888888877766667777788888888888888766677777888888888888877643

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=2.3e-19  Score=156.82  Aligned_cols=201  Identities=22%  Similarity=0.247  Sum_probs=156.9

Q ss_pred             CCCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCccccccccc
Q 048333          110 LSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASF  189 (413)
Q Consensus       110 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~  189 (413)
                      ...+.+++-+++.++ .+|..+.  +++++|++++|.++.+           .+..|.++++|++|++++|.++..    
T Consensus         9 ~~~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l-----------~~~~f~~l~~L~~L~L~~N~l~~l----   70 (266)
T d1p9ag_           9 VASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTF-----------SLATLMPYTRLTQLNLDRAELTKL----   70 (266)
T ss_dssp             STTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEE-----------EGGGGTTCTTCCEEECTTSCCCEE----
T ss_pred             cCCCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCc-----------CHHHhhcccccccccccccccccc----
Confidence            445566777787777 4565442  5788889988888732           235677888899999988888743    


Q ss_pred             cccccccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccch
Q 048333          190 RCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPH  269 (413)
Q Consensus       190 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~  269 (413)
                            + .+..+++|+.|++++|.+. ..+..+..+++|+.|+++++......+..+..+.+++.|.+.+|.+....+.
T Consensus        71 ------~-~~~~l~~L~~L~Ls~N~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~  142 (266)
T d1p9ag_          71 ------Q-VDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPG  142 (266)
T ss_dssp             ------E-CCSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTT
T ss_pred             ------c-ccccccccccccccccccc-ccccccccccccccccccccccceeeccccccccccccccccccccceeccc
Confidence                  2 3456788889999888876 4556677888899999988887766666777888899999998888666666


Q ss_pred             hhccCCCCCeEecCCcccCCcccccccCCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcc
Q 048333          270 SIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGG  337 (413)
Q Consensus       270 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~  337 (413)
                      .+..+++++.+++++|.+....+..+..+++|+.|++++|+++ .+|..+..+++|+.|++++|....
T Consensus       143 ~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~C  209 (266)
T d1p9ag_         143 LLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC  209 (266)
T ss_dssp             TTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             cccccccchhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCCC
Confidence            7778889999999999888766777888899999999999987 677777788999999999988763

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=4.3e-19  Score=155.07  Aligned_cols=178  Identities=23%  Similarity=0.204  Sum_probs=102.7

Q ss_pred             CCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCcccccccccc
Q 048333          111 SNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFR  190 (413)
Q Consensus       111 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~  190 (413)
                      +++++|+|++|.+++..+..|.++++|++|++++|.++.+            + .++.+++|+.|++++|+++.      
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l------------~-~~~~l~~L~~L~Ls~N~l~~------   91 (266)
T d1p9ag_          31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL------------Q-VDGTLPVLGTLDLSHNQLQS------   91 (266)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE------------E-CCSCCTTCCEEECCSSCCSS------
T ss_pred             cCCCEEECcCCcCCCcCHHHhhcccccccccccccccccc------------c-cccccccccccccccccccc------
Confidence            3455666666655544444555566666666666655422            1 13445566666666665542      


Q ss_pred             ccccccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchh
Q 048333          191 CFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHS  270 (413)
Q Consensus       191 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~  270 (413)
                          .+..+..+++|+.|+++++.+....+..+..+.+++.|.+++|.+....+..+..+++++.+++++|.+....+..
T Consensus        92 ----~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~  167 (266)
T d1p9ag_          92 ----LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGL  167 (266)
T ss_dssp             ----CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTT
T ss_pred             ----cccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCccc
Confidence                2334555566666666666555444445555666666666666665444445555666666666666665555555


Q ss_pred             hccCCCCCeEecCCcccCCcccccccCCCCCcEEEccCCccc
Q 048333          271 IGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFS  312 (413)
Q Consensus       271 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~  312 (413)
                      +..+++|++|++++|.++ .++..+..+++|+.|+|++|.+.
T Consensus       168 ~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         168 LNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             TTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             cccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCC
Confidence            666666677777666666 44555555666777777766553

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.78  E-value=3.9e-17  Score=148.45  Aligned_cols=297  Identities=20%  Similarity=0.198  Sum_probs=176.5

Q ss_pred             ceEEEecCCCccccccCCccccccccccceeeccccCCCCCCCCccccCcCccccCCcchhhhhhcCCCCcEEEcCCccC
Q 048333           44 HVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENLFEKLSNLKTLNLGDVSI  123 (413)
Q Consensus        44 ~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~L~~L~l~~~~~  123 (413)
                      ++++|+|+++.++. +|+  .   .++|++|++++|+++  ++|+.+++|+.|++.++.+...-.-.+.|++|++++|.+
T Consensus        39 ~l~~LdLs~~~L~~-lp~--~---~~~L~~L~Ls~N~l~--~lp~~~~~L~~L~l~~n~l~~l~~lp~~L~~L~L~~n~l  110 (353)
T d1jl5a_          39 QAHELELNNLGLSS-LPE--L---PPHLESLVASCNSLT--ELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQL  110 (353)
T ss_dssp             TCSEEECTTSCCSC-CCS--C---CTTCSEEECCSSCCS--SCCCCCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCC
T ss_pred             CCCEEEeCCCCCCC-CCC--C---CCCCCEEECCCCCCc--ccccchhhhhhhhhhhcccchhhhhcccccccccccccc
Confidence            67899999998863 443  2   478999999999887  378888899999888776654332335799999999988


Q ss_pred             CCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCccccccccccccccccccccCCC
Q 048333          124 DSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLG  203 (413)
Q Consensus       124 ~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~l~  203 (413)
                      . .+|. +..+++|++|+++++.+...            +.   ....+..+.+..+....           +..+..++
T Consensus       111 ~-~lp~-~~~l~~L~~L~l~~~~~~~~------------~~---~~~~l~~l~~~~~~~~~-----------~~~l~~l~  162 (353)
T d1jl5a_         111 E-KLPE-LQNSSFLKIIDVDNNSLKKL------------PD---LPPSLEFIAAGNNQLEE-----------LPELQNLP  162 (353)
T ss_dssp             S-SCCC-CTTCTTCCEEECCSSCCSCC------------CC---CCTTCCEEECCSSCCSS-----------CCCCTTCT
T ss_pred             c-cccc-hhhhccceeecccccccccc------------cc---ccccccchhhccccccc-----------cccccccc
Confidence            7 4554 57788999999988876531            11   23455556655554332           12344556


Q ss_pred             CccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccCCCCCeEecC
Q 048333          204 SLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLG  283 (413)
Q Consensus       204 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  283 (413)
                      .++.+.++++.... .+.   .....+.+...+.... ..+ ....++.++.+.++++... ..+   ....++..+.+.
T Consensus       163 ~l~~L~l~~n~~~~-~~~---~~~~~~~l~~~~~~~~-~~~-~~~~l~~L~~l~l~~n~~~-~~~---~~~~~l~~~~~~  232 (353)
T d1jl5a_         163 FLTAIYADNNSLKK-LPD---LPLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLK-TLP---DLPPSLEALNVR  232 (353)
T ss_dssp             TCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCS-SCC---SCCTTCCEEECC
T ss_pred             cceecccccccccc-ccc---cccccccccccccccc-ccc-ccccccccccccccccccc-ccc---cccccccccccc
Confidence            66667666665432 111   1112233333333322 122 2344555666666555431 111   122334444444


Q ss_pred             CcccCCccccc----------------ccC-CCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcceechhHhhh
Q 048333          284 FNNFSGDLLGS----------------IGN-LRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLT  346 (413)
Q Consensus       284 ~~~~~~~~~~~----------------l~~-~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~  346 (413)
                      .+.+.+. +..                +.. .......++..+.+.    .....+++|++|++++|.+.. ++     .
T Consensus       233 ~~~~~~~-~~~~~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~----~~~~~~~~L~~L~Ls~N~l~~-lp-----~  301 (353)
T d1jl5a_         233 DNYLTDL-PELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIR----SLCDLPPSLEELNVSNNKLIE-LP-----A  301 (353)
T ss_dssp             SSCCSCC-CCCCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCS----EECCCCTTCCEEECCSSCCSC-CC-----C
T ss_pred             ccccccc-ccccccccccccccccccccccccchhcccccccCccc----cccccCCCCCEEECCCCccCc-cc-----c
Confidence            4433211 100                011 122233344333332    223446889999999998873 33     2


Q ss_pred             cccCCCeeeccCccccccceeeeccccccccccceeeeccCCCCCCcchHhhcCCCCcEEeCC
Q 048333          347 SWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLTKFPNFLENQNHLVILNLS  409 (413)
Q Consensus       347 ~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~  409 (413)
                      .+++|+.|++++|.|+.++..         +++|++|++++|+++.+|...   .+|+.|.+.
T Consensus       302 ~~~~L~~L~L~~N~L~~l~~~---------~~~L~~L~L~~N~L~~lp~~~---~~L~~L~~~  352 (353)
T d1jl5a_         302 LPPRLERLIASFNHLAEVPEL---------PQNLKQLHVEYNPLREFPDIP---ESVEDLRMN  352 (353)
T ss_dssp             CCTTCCEEECCSSCCSCCCCC---------CTTCCEEECCSSCCSSCCCCC---TTCCEEECC
T ss_pred             ccCCCCEEECCCCcCCccccc---------cCCCCEEECcCCcCCCCCccc---cccCeeECc
Confidence            467899999999987765431         357999999999998888632   456677664

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=2.1e-20  Score=176.62  Aligned_cols=347  Identities=19%  Similarity=0.162  Sum_probs=179.0

Q ss_pred             CceEEEecCCCccccccCCccccccccccceeeccccCCCCCCCCccccCcCccccCCcchhhhhhcCCCCcEEEcCCcc
Q 048333           43 GHVIKLNLSHGCLFGSINSSSSLFKLVHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENLFEKLSNLKTLNLGDVS  122 (413)
Q Consensus        43 ~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~L~~L~l~~~~  122 (413)
                      .+++.|+++++.+++.... ..+..+++++.|++++|.++....              ..+..++..+++|++|++++|.
T Consensus         2 ~~l~~ld~~~~~i~~~~~~-~l~~~l~~l~~L~L~~~~i~~~~~--------------~~l~~~L~~~~~L~~LdLs~N~   66 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWA-ELLPLLQQCQVVRLDDCGLTEARC--------------KDISSALRVNPALAELNLRSNE   66 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHH-HHHHHHTTCSEEEEESSCCCHHHH--------------HHHHHHHHTCTTCCEEECTTCC
T ss_pred             CCCCEEEeeCCcCChHHHH-HHHHhCCCCCEEEeCCCCCCHHHH--------------HHHHHHHhcCCCCCEEECcCCc
Confidence            3689999999988763211 146788999999999997764211              1223334455555555555555


Q ss_pred             CCCC----cCcccc-CCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCccccccccc--------
Q 048333          123 IDST----IPHNIK-NLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASF--------  189 (413)
Q Consensus       123 ~~~~----~~~~~~-~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~--------  189 (413)
                      ++..    +...+. ...+|++|++++|.+++...       ..++..+..+++|++|++++|.+.+.....        
T Consensus        67 i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~-------~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~  139 (460)
T d1z7xw1          67 LGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGC-------GVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDP  139 (460)
T ss_dssp             CHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGH-------HHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTST
T ss_pred             CChHHHHHHHHHHhcCCCCCCEEECCCCCcccccc-------ccccchhhccccccccccccccchhhhhhhhhhccccc
Confidence            4321    111111 12345555555555443110       012233444555555555555543321100        


Q ss_pred             ----------------cccccccccccCCC-----------------------------CccEEeCCCCcCCCc----ch
Q 048333          190 ----------------RCFGELPISMGNLG-----------------------------SLKELDLSQNGFFGE----LP  220 (413)
Q Consensus       190 ----------------~~~~~~~~~~~~l~-----------------------------~L~~L~l~~~~~~~~----~~  220 (413)
                                      .........+...+                             ....+.+..+.....    ..
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~  219 (460)
T d1z7xw1         140 QCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLC  219 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHH
T ss_pred             ccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhccc
Confidence                            00000000011112                             333444444433211    11


Q ss_pred             hhhhCCCCCCEEEccCCcCcc-----cCCcccCCCCCCcEEEecCCccccc----cchhhccCCCCCeEecCCcccCCcc
Q 048333          221 TSIRNLFSLEKLDLSFNKLSG-----EFPWSTGNFSSLKLLNLRSCGFWSK----VPHSIGNFTRLQFLFLGFNNFSGDL  291 (413)
Q Consensus       221 ~~l~~~~~L~~L~l~~~~~~~-----~~~~~l~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~  291 (413)
                      ..+...+.++.+.+.++....     ...........++.+++++|.+...    ....+...+.++.+++++|.+.+..
T Consensus       220 ~~l~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~  299 (460)
T d1z7xw1         220 GIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEG  299 (460)
T ss_dssp             HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHH
T ss_pred             ccccccccccccchhhccccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            233445667777776665431     1222333456777788877765322    2233455677788888877765432


Q ss_pred             cccc-----cCCCCCcEEEccCCcccccc----cccccCCCCCCEEECCCCcCcceech--hHhh-hcccCCCeeeccCc
Q 048333          292 LGSI-----GNLRSLEVIYIAKCNFSGQI----TSSLRNLTQLVVLDMAQNSYGGTVEL--DVLL-TSWKNLEALDISLN  359 (413)
Q Consensus       292 ~~~l-----~~~~~L~~L~L~~~~~~~~~----~~~~~~~~~L~~L~l~~n~~~~~~~~--~~~~-~~~~~L~~L~l~~~  359 (413)
                      ...+     ...+.|+.+.+.+|.++...    ...+..+++|++|++++|.+.+....  ...+ ...+.|++|++++|
T Consensus       300 ~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n  379 (460)
T d1z7xw1         300 ARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADC  379 (460)
T ss_dssp             HHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred             cchhhccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCC
Confidence            2222     12457788888887776432    22334567788888888877642211  1112 24566888888888


Q ss_pred             cccccceeeecccccc-ccccceeeeccCCCCC-----CcchHhhc-CCCCcEEeCCCCCC
Q 048333          360 RSSVLTKATFDATTDT-TSQKIQYRGLRSCNLT-----KFPNFLEN-QNHLVILNLSDNRI  413 (413)
Q Consensus       360 ~i~~l~~~~~~~~~~~-~~~~L~~L~l~~~~l~-----~l~~~~~~-l~~L~~L~l~~n~i  413 (413)
                      .++..+  .......+ .+++|++|++++|.++     .+...+.. ..+|+.|++.+|++
T Consensus       380 ~i~~~~--~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~  438 (460)
T d1z7xw1         380 DVSDSS--CSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYW  438 (460)
T ss_dssp             CCCHHH--HHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCC
T ss_pred             CCChHH--HHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCC
Confidence            754321  11111122 4577888888888877     12233332 33688888887764

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.74  E-value=1.4e-15  Score=137.89  Aligned_cols=282  Identities=21%  Similarity=0.190  Sum_probs=164.5

Q ss_pred             cccceeeccccCCCCCCCCccccCcCccccCCcchhhhhhcCCCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCccc
Q 048333           69 VHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENLFEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQ  148 (413)
Q Consensus        69 ~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~  148 (413)
                      .+++.||+++++++.  +|+.+++|+.|++..+.+...-..+.+|++|++++|.++ .++..   .+.|++|++++|.+.
T Consensus        38 ~~l~~LdLs~~~L~~--lp~~~~~L~~L~Ls~N~l~~lp~~~~~L~~L~l~~n~l~-~l~~l---p~~L~~L~L~~n~l~  111 (353)
T d1jl5a_          38 RQAHELELNNLGLSS--LPELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLK-ALSDL---PPLLEYLGVSNNQLE  111 (353)
T ss_dssp             HTCSEEECTTSCCSC--CCSCCTTCSEEECCSSCCSSCCCCCTTCCEEECCSSCCS-CCCSC---CTTCCEEECCSSCCS
T ss_pred             cCCCEEEeCCCCCCC--CCCCCCCCCEEECCCCCCcccccchhhhhhhhhhhcccc-hhhhh---ccccccccccccccc
Confidence            468999999998864  676666666666666555544334456666676666654 22221   134666777666654


Q ss_pred             ccchhhhhhcccCCCccccCCCCccEEECCCCccccccccccccccccccccCCCCccEEeCCCCcCCCcchhhhhCCCC
Q 048333          149 AMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFS  228 (413)
Q Consensus       149 ~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~  228 (413)
                                  .+|. ++.+++|+.|+++++.+...          +   .....+..+.+..+...  ....+..++.
T Consensus       112 ------------~lp~-~~~l~~L~~L~l~~~~~~~~----------~---~~~~~l~~l~~~~~~~~--~~~~l~~l~~  163 (353)
T d1jl5a_         112 ------------KLPE-LQNSSFLKIIDVDNNSLKKL----------P---DLPPSLEFIAAGNNQLE--ELPELQNLPF  163 (353)
T ss_dssp             ------------SCCC-CTTCTTCCEEECCSSCCSCC----------C---CCCTTCCEEECCSSCCS--SCCCCTTCTT
T ss_pred             ------------cccc-hhhhccceeecccccccccc----------c---cccccccchhhcccccc--cccccccccc
Confidence                        2332 45566677777666665432          1   11234555555444332  1233455666


Q ss_pred             CCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccCCCCCeEecCCcccCCcccccccCCCCCcEEEccC
Q 048333          229 LEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAK  308 (413)
Q Consensus       229 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~  308 (413)
                      ++.+.+.++.... .+.   .....+.+......+ ...+ .+..++.|+.+.++++.... .+   ....++..+.+..
T Consensus       164 l~~L~l~~n~~~~-~~~---~~~~~~~l~~~~~~~-~~~~-~~~~l~~L~~l~l~~n~~~~-~~---~~~~~l~~~~~~~  233 (353)
T d1jl5a_         164 LTAIYADNNSLKK-LPD---LPLSLESIVAGNNIL-EELP-ELQNLPFLTTIYADNNLLKT-LP---DLPPSLEALNVRD  233 (353)
T ss_dssp             CCEEECCSSCCSS-CCC---CCTTCCEEECCSSCC-SSCC-CCTTCTTCCEEECCSSCCSS-CC---SCCTTCCEEECCS
T ss_pred             ceecccccccccc-ccc---ccccccccccccccc-cccc-cccccccccccccccccccc-cc---ccccccccccccc
Confidence            7777776665542 121   112234444444333 2222 35667888999988876553 22   2345677777777


Q ss_pred             CcccccccccccC-----------------CCCCCEEECCCCcCcceechhHhhhcccCCCeeeccCccccccceeeecc
Q 048333          309 CNFSGQITSSLRN-----------------LTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTKATFDA  371 (413)
Q Consensus       309 ~~~~~~~~~~~~~-----------------~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~  371 (413)
                      +.+... +.....                 .......++..+.+.+      ....+++|++|++++|+++.++.     
T Consensus       234 ~~~~~~-~~~~~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~------~~~~~~~L~~L~Ls~N~l~~lp~-----  301 (353)
T d1jl5a_         234 NYLTDL-PELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRS------LCDLPPSLEELNVSNNKLIELPA-----  301 (353)
T ss_dssp             SCCSCC-CCCCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSE------ECCCCTTCCEEECCSSCCSCCCC-----
T ss_pred             cccccc-ccccccccccccccccccccccccchhcccccccCcccc------ccccCCCCCEEECCCCccCcccc-----
Confidence            665421 111100                 0122233333333332      12346899999999999776542     


Q ss_pred             ccccccccceeeeccCCCCCCcchHhhcCCCCcEEeCCCCCC
Q 048333          372 TTDTTSQKIQYRGLRSCNLTKFPNFLENQNHLVILNLSDNRI  413 (413)
Q Consensus       372 ~~~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i  413 (413)
                          .+++|+.|++++|+++.+|.   .+++|+.|++++|+|
T Consensus       302 ----~~~~L~~L~L~~N~L~~l~~---~~~~L~~L~L~~N~L  336 (353)
T d1jl5a_         302 ----LPPRLERLIASFNHLAEVPE---LPQNLKQLHVEYNPL  336 (353)
T ss_dssp             ----CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCC
T ss_pred             ----ccCCCCEEECCCCcCCcccc---ccCCCCEEECcCCcC
Confidence                24689999999999999885   357899999999986

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.73  E-value=5.9e-17  Score=137.86  Aligned_cols=188  Identities=20%  Similarity=0.293  Sum_probs=125.8

Q ss_pred             cCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccCCCCCe
Q 048333          200 GNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQF  279 (413)
Q Consensus       200 ~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  279 (413)
                      +.+.+|+.|++.+|.+.. + ..+..+++|++|++++|.+....+  +..+++++.++++++.+. .. ..+..+++|+.
T Consensus        38 ~~l~~L~~L~l~~~~i~~-l-~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~-~i-~~l~~l~~L~~  111 (227)
T d1h6ua2          38 ADLDGITTLSAFGTGVTT-I-EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK-NV-SAIAGLQSIKT  111 (227)
T ss_dssp             HHHHTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS-CC-GGGTTCTTCCE
T ss_pred             HHcCCcCEEECCCCCCCc-c-hhHhcCCCCcEeecCCceeecccc--cccccccccccccccccc-cc-ccccccccccc
Confidence            344566666666666642 3 345666667777766666653222  566677777777766553 22 23566777777


Q ss_pred             EecCCcccCCcccccccCCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcceechhHhhhcccCCCeeeccCc
Q 048333          280 LFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLN  359 (413)
Q Consensus       280 L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~  359 (413)
                      +.++++...+  ...+...+.+..+.++++.+...  ..+..+++|+.|++++|.+.+..    .+.++++|+.|++++|
T Consensus       112 l~l~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~~----~l~~l~~L~~L~Ls~n  183 (227)
T d1h6ua2         112 LDLTSTQITD--VTPLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDLT----PLANLSKLTTLKADDN  183 (227)
T ss_dssp             EECTTSCCCC--CGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCCCG----GGTTCTTCCEEECCSS
T ss_pred             cccccccccc--cchhccccchhhhhchhhhhchh--hhhccccccccccccccccccch----hhcccccceecccCCC
Confidence            7777776553  23355667788888877776532  23566788888888888776432    3667888888888888


Q ss_pred             cccccceeeeccccccccccceeeeccCCCCCCcchHhhcCCCCcEEeCC
Q 048333          360 RSSVLTKATFDATTDTTSQKIQYRGLRSCNLTKFPNFLENQNHLVILNLS  409 (413)
Q Consensus       360 ~i~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~  409 (413)
                      +++++++.       ..+++|++|++++|+++.++. ++++++|+.|+++
T Consensus       184 ~l~~l~~l-------~~l~~L~~L~Ls~N~lt~i~~-l~~l~~L~~L~ls  225 (227)
T d1h6ua2         184 KISDISPL-------ASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLT  225 (227)
T ss_dssp             CCCCCGGG-------GGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEE
T ss_pred             ccCCChhh-------cCCCCCCEEECcCCcCCCCcc-cccCCCCCEEEee
Confidence            86654421       156788899999888887764 7788999998886

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.72  E-value=8.2e-17  Score=136.93  Aligned_cols=188  Identities=22%  Similarity=0.352  Sum_probs=110.7

Q ss_pred             hcCCCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCccccccc
Q 048333          108 EKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAA  187 (413)
Q Consensus       108 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~  187 (413)
                      ..+.+|++|++.+|.++. ++ .+..+++|++|++++|.+..+             ..+..+++|+++++++|.+++.  
T Consensus        38 ~~l~~L~~L~l~~~~i~~-l~-~l~~l~~L~~L~ls~n~i~~~-------------~~l~~l~~l~~l~~~~n~~~~i--  100 (227)
T d1h6ua2          38 ADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDL-------------APLKNLTKITELELSGNPLKNV--  100 (227)
T ss_dssp             HHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-------------GGGTTCCSCCEEECCSCCCSCC--
T ss_pred             HHcCCcCEEECCCCCCCc-ch-hHhcCCCCcEeecCCceeecc-------------cccccccccccccccccccccc--
Confidence            345566666666666653 32 355666666666666665421             1255566666666666655532  


Q ss_pred             cccccccccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCcccccc
Q 048333          188 SFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKV  267 (413)
Q Consensus       188 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~  267 (413)
                               ..+..+++|+.++++.+.....  ..+...+.++.+.++++.+...  ..+..+++|+.|.+++|.+....
T Consensus       101 ---------~~l~~l~~L~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~~  167 (227)
T d1h6ua2         101 ---------SAIAGLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDLT  167 (227)
T ss_dssp             ---------GGGTTCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCCCG
T ss_pred             ---------cccccccccccccccccccccc--chhccccchhhhhchhhhhchh--hhhccccccccccccccccccch
Confidence                     2345566666666666554321  2345556666666666655422  22445566777777766653222


Q ss_pred             chhhccCCCCCeEecCCcccCCcccccccCCCCCcEEEccCCcccccccccccCCCCCCEEECC
Q 048333          268 PHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMA  331 (413)
Q Consensus       268 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~  331 (413)
                        .+..+++|+.|++++|.+.+  ...++.+++|+.|++++|++++ ++ .+..+++|+.|+++
T Consensus       168 --~l~~l~~L~~L~Ls~n~l~~--l~~l~~l~~L~~L~Ls~N~lt~-i~-~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         168 --PLANLSKLTTLKADDNKISD--ISPLASLPNLIEVHLKNNQISD-VS-PLANTSNLFIVTLT  225 (227)
T ss_dssp             --GGTTCTTCCEEECCSSCCCC--CGGGGGCTTCCEEECTTSCCCB-CG-GGTTCTTCCEEEEE
T ss_pred             --hhcccccceecccCCCccCC--ChhhcCCCCCCEEECcCCcCCC-Cc-ccccCCCCCEEEee
Confidence              25667777777777777664  2336667777777777777763 33 25677777777775

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=6.7e-18  Score=159.12  Aligned_cols=350  Identities=16%  Similarity=0.133  Sum_probs=210.3

Q ss_pred             CCceEEEecCCCcccccc--CCccccccccccceeeccccCCCCCCCCccccCcCccccCCcchhhhhh-cCCCCcEEEc
Q 048333           42 TGHVIKLNLSHGCLFGSI--NSSSSLFKLVHLKWLNLALNDFNSSEIPPEIINLSRLELQKPSFENLFE-KLSNLKTLNL  118 (413)
Q Consensus        42 ~~~l~~L~l~~~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~-~~~~L~~L~l  118 (413)
                      .++++.|+|++|.++...  ..+.++..+++|++||+++|.++...+.              .+...+. ...+|++|++
T Consensus        26 l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~--------------~l~~~l~~~~~~L~~L~L   91 (460)
T d1z7xw1          26 LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVH--------------CVLQGLQTPSCKIQKLSL   91 (460)
T ss_dssp             HTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHH--------------HHHHTTCSTTCCCCEEEC
T ss_pred             CCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHH--------------HHHHHHhcCCCCCCEEEC
Confidence            357788999999876321  1112567899999999999876432100              0111111 1246777777


Q ss_pred             CCccCCCC----cCccccCCCCCcEEEccCCcccccchhhhhh-------------cc---------cCCCccccCCCCc
Q 048333          119 GDVSIDST----IPHNIKNLSSLTFVSLRNCELQAMCSFFLIQ-------------IS---------GRIPSSLGNLSKL  172 (413)
Q Consensus       119 ~~~~~~~~----~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~-------------~~---------~~~~~~l~~~~~L  172 (413)
                      ++|.+++.    ++..+..+++|++|++++|.+..........             ..         ......+...+.+
T Consensus        92 ~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  171 (460)
T d1z7xw1          92 QNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDF  171 (460)
T ss_dssp             TTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTC
T ss_pred             CCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhccccccccccccc
Confidence            77766532    3444556677777777776654421111000             00         0000112234556


Q ss_pred             cEEECCCCccccccccc-----------------ccc-------ccccccccCCCCccEEeCCCCcCCCc-----chhhh
Q 048333          173 LHLDLSLNELQGEAASF-----------------RCF-------GELPISMGNLGSLKELDLSQNGFFGE-----LPTSI  223 (413)
Q Consensus       173 ~~L~l~~~~i~~~~~~~-----------------~~~-------~~~~~~~~~l~~L~~L~l~~~~~~~~-----~~~~l  223 (413)
                      +.+.++++.........                 ...       ......+...+.++.+++..+.....     .....
T Consensus       172 ~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~~~~~~~~~~  251 (460)
T d1z7xw1         172 KELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLL  251 (460)
T ss_dssp             CEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHT
T ss_pred             ccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhccccccccchhhcccc
Confidence            66666555443211000                 000       00112234567889999998876422     22334


Q ss_pred             hCCCCCCEEEccCCcCccc----CCcccCCCCCCcEEEecCCccccccchhh-----ccCCCCCeEecCCcccCCccccc
Q 048333          224 RNLFSLEKLDLSFNKLSGE----FPWSTGNFSSLKLLNLRSCGFWSKVPHSI-----GNFTRLQFLFLGFNNFSGDLLGS  294 (413)
Q Consensus       224 ~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~~~~~-----~~~~~L~~L~l~~~~~~~~~~~~  294 (413)
                      .....++.+++++|.+...    ....+...+.++.++++++.+.+.....+     .....|+.++++++.+.......
T Consensus       252 ~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~  331 (460)
T d1z7xw1         252 HPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSH  331 (460)
T ss_dssp             STTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccccchhhhhhhh
Confidence            4567899999999877522    22334557889999999998754322222     23468999999999887654443


Q ss_pred             c----cCCCCCcEEEccCCccccc----cccccc-CCCCCCEEECCCCcCccee--chhHhhhcccCCCeeeccCccccc
Q 048333          295 I----GNLRSLEVIYIAKCNFSGQ----ITSSLR-NLTQLVVLDMAQNSYGGTV--ELDVLLTSWKNLEALDISLNRSSV  363 (413)
Q Consensus       295 l----~~~~~L~~L~L~~~~~~~~----~~~~~~-~~~~L~~L~l~~n~~~~~~--~~~~~~~~~~~L~~L~l~~~~i~~  363 (413)
                      +    ...++|++|+|++|.+++.    ++..+. ..+.|++|++++|.+++..  .+...+..+++|++|+|++|.+++
T Consensus       332 l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~  411 (460)
T d1z7xw1         332 FSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD  411 (460)
T ss_dssp             HHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred             cccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCH
Confidence            3    3467999999999998743    333333 4678999999999997532  222357778999999999999754


Q ss_pred             cceeeecccccc--ccccceeeeccCCCCC-----CcchHhhcCCCCcEEe
Q 048333          364 LTKATFDATTDT--TSQKIQYRGLRSCNLT-----KFPNFLENQNHLVILN  407 (413)
Q Consensus       364 l~~~~~~~~~~~--~~~~L~~L~l~~~~l~-----~l~~~~~~l~~L~~L~  407 (413)
                      .+..  .....+  ....|+.|++.++.+.     .+.......|+|+.|.
T Consensus       412 ~g~~--~l~~~l~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~~~~~l~~~~  460 (460)
T d1z7xw1         412 AGIL--QLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVIS  460 (460)
T ss_dssp             HHHH--HHHHHHTSTTCCCCEEECTTCCCCHHHHHHHHHHHHHCTTSEEEC
T ss_pred             HHHH--HHHHHHHhCCCccCEEECCCCCCCHHHHHHHHHHHHhCCCCEEeC
Confidence            2211  111111  3447999999999988     2334456788888763

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.65  E-value=5.1e-17  Score=147.36  Aligned_cols=107  Identities=16%  Similarity=0.062  Sum_probs=61.1

Q ss_pred             cCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCcccccccc-ccccccccccccCCCCc
Q 048333          127 IPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAAS-FRCFGELPISMGNLGSL  205 (413)
Q Consensus       127 ~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~-~~~~~~~~~~~~~l~~L  205 (413)
                      +...+.+...|++|++++|.+.....       ..+...+...++|+.++++++........ ......+...+..+++|
T Consensus        23 l~~~L~~~~~l~~L~Ls~n~i~~~~~-------~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L   95 (344)
T d2ca6a1          23 VFAVLLEDDSVKEIVLSGNTIGTEAA-------RWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKL   95 (344)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHH-------HHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTC
T ss_pred             HHHHHhhCCCCCEEECcCCcCCHHHH-------HHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCc
Confidence            44556667888888888887653111       12234456677888888877654322110 00011123345566777


Q ss_pred             cEEeCCCCcCCCc----chhhhhCCCCCCEEEccCCcCc
Q 048333          206 KELDLSQNGFFGE----LPTSIRNLFSLEKLDLSFNKLS  240 (413)
Q Consensus       206 ~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~  240 (413)
                      ++|++++|.+...    +...+..+++|+.|++++|.+.
T Consensus        96 ~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~  134 (344)
T d2ca6a1          96 HTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG  134 (344)
T ss_dssp             CEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCH
T ss_pred             ccccccccccccccccchhhhhcccccchheeccccccc
Confidence            7778777776543    3334455677777777776653

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.64  E-value=4.2e-15  Score=124.42  Aligned_cols=165  Identities=27%  Similarity=0.381  Sum_probs=91.4

Q ss_pred             CCCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCccccccccc
Q 048333          110 LSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASF  189 (413)
Q Consensus       110 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~  189 (413)
                      +..|++|++++|.++. ++ .+..+++|++|++++|.+++            ++ .++.+++|+.|++++|++++.    
T Consensus        45 L~~L~~L~l~~~~i~~-l~-~l~~l~~L~~L~L~~n~i~~------------l~-~~~~l~~L~~L~l~~n~i~~l----  105 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTD------------IK-PLANLKNLGWLFLDENKVKDL----  105 (210)
T ss_dssp             HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC------------CG-GGTTCTTCCEEECCSSCCCCG----
T ss_pred             hcCccEEECcCCCCCC-ch-hHhhCCCCCEEeCCCccccC------------cc-ccccCcccccccccccccccc----
Confidence            4455666666665543 22 24556666666666665542            11 244556666666666665532    


Q ss_pred             cccccccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccch
Q 048333          190 RCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPH  269 (413)
Q Consensus       190 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~  269 (413)
                            + .+..+++|+.|+++++.... + ..+..++.++.+.++++.+..  ...+..+++|+.+++++|.+.+ .+ 
T Consensus       106 ------~-~l~~l~~L~~L~l~~~~~~~-~-~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~-i~-  172 (210)
T d1h6ta2         106 ------S-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISD-IV-  172 (210)
T ss_dssp             ------G-GGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCC-CG-
T ss_pred             ------c-cccccccccccccccccccc-c-ccccccccccccccccccccc--cccccccccccccccccccccc-cc-
Confidence                  2 34555666666666665532 2 235556666666666665542  2234455666666666666533 22 


Q ss_pred             hhccCCCCCeEecCCcccCCcccccccCCCCCcEEEccC
Q 048333          270 SIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAK  308 (413)
Q Consensus       270 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~  308 (413)
                      .+..+++|+.|++++|.+++ . ..++.+++|+.|++++
T Consensus       173 ~l~~l~~L~~L~Ls~N~i~~-l-~~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         173 PLAGLTKLQNLYLSKNHISD-L-RALAGLKNLDVLELFS  209 (210)
T ss_dssp             GGTTCTTCCEEECCSSCCCB-C-GGGTTCTTCSEEEEEE
T ss_pred             cccCCCCCCEEECCCCCCCC-C-hhhcCCCCCCEEEccC
Confidence            25666677777777776653 2 2466667777776643

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.64  E-value=6.6e-15  Score=122.13  Aligned_cols=161  Identities=29%  Similarity=0.412  Sum_probs=86.7

Q ss_pred             CCCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCccccccccc
Q 048333          110 LSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASF  189 (413)
Q Consensus       110 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~  189 (413)
                      ++++++|+++++.+.. + +.+..+++|++|++++|.+++            ++ .+.++++|++|++++|.+...    
T Consensus        39 l~~l~~L~l~~~~i~~-l-~~l~~l~nL~~L~Ls~N~l~~------------~~-~l~~l~~L~~L~l~~n~~~~~----   99 (199)
T d2omxa2          39 LDQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTD------------IT-PLKNLTKLVDILMNNNQIADI----   99 (199)
T ss_dssp             HTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCC------------CG-GGTTCTTCCEEECCSSCCCCC----
T ss_pred             hcCCCEEECCCCCCCC-c-cccccCCCcCcCccccccccC------------cc-cccCCcccccccccccccccc----
Confidence            4555566665555542 2 224555666666666665542            11 245555666666666555422    


Q ss_pred             cccccccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccch
Q 048333          190 RCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPH  269 (413)
Q Consensus       190 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~  269 (413)
                             ..+..++.|+.|+++++.....  ..+..+++|+.+++++|.+.. . ..+..+++++.|++.+|.+.+ .+ 
T Consensus       100 -------~~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~-~-~~l~~~~~L~~L~l~~n~l~~-l~-  166 (199)
T d2omxa2         100 -------TPLANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISD-I-SALSGLTSLQQLNFSSNQVTD-LK-  166 (199)
T ss_dssp             -------GGGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCC-C-GGGTTCTTCSEEECCSSCCCC-CG-
T ss_pred             -------cccccccccccccccccccccc--cccchhhhhHHhhhhhhhhcc-c-ccccccccccccccccccccC-Cc-
Confidence                   1245556666666665555321  234556666666666665542 2 235556666666666665533 22 


Q ss_pred             hhccCCCCCeEecCCcccCCcccccccCCCCCcEE
Q 048333          270 SIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVI  304 (413)
Q Consensus       270 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L  304 (413)
                      .+..+++|++|++++|.+++ . ..++.+++|++|
T Consensus       167 ~l~~l~~L~~L~ls~N~i~~-i-~~l~~L~~L~~L  199 (199)
T d2omxa2         167 PLANLTTLERLDISSNKVSD-I-SVLAKLTNLESL  199 (199)
T ss_dssp             GGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEE
T ss_pred             cccCCCCCCEEECCCCCCCC-C-ccccCCCCCCcC
Confidence            25666677777777776653 2 235566666654

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.63  E-value=5.1e-15  Score=123.86  Aligned_cols=180  Identities=24%  Similarity=0.323  Sum_probs=135.4

Q ss_pred             EcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCcccccccccccccccc
Q 048333          117 NLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELP  196 (413)
Q Consensus       117 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~  196 (413)
                      .++.+.+++.++.  ..+..|++|++++|.+..            + ..+..+++|++|++++|.+++.          +
T Consensus        30 ~l~~~~~~~~~~~--~~L~~L~~L~l~~~~i~~------------l-~~l~~l~~L~~L~L~~n~i~~l----------~   84 (210)
T d1h6ta2          30 NLKKKSVTDAVTQ--NELNSIDQIIANNSDIKS------------V-QGIQYLPNVTKLFLNGNKLTDI----------K   84 (210)
T ss_dssp             HTTCSCTTSEECH--HHHHTCCEEECTTSCCCC------------C-TTGGGCTTCCEEECCSSCCCCC----------G
T ss_pred             HhCcCccCCccCH--HHhcCccEEECcCCCCCC------------c-hhHhhCCCCCEEeCCCccccCc----------c
Confidence            4455555544332  346788999999988763            2 3467789999999999988753          2


Q ss_pred             ccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccCCcccCCCCCCcEEEecCCccccccchhhccCCC
Q 048333          197 ISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTR  276 (413)
Q Consensus       197 ~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  276 (413)
                       .+..+++|+.|++++|.+. .++ .+..+++|+.|+++++....  ...+..++.++.++++++.+.+  ...+..+++
T Consensus        85 -~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~~~~~~--~~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~  157 (210)
T d1h6ta2          85 -PLANLKNLGWLFLDENKVK-DLS-SLKDLKKLKSLSLEHNGISD--INGLVHLPQLESLYLGNNKITD--ITVLSRLTK  157 (210)
T ss_dssp             -GGTTCTTCCEEECCSSCCC-CGG-GGTTCTTCCEEECTTSCCCC--CGGGGGCTTCCEEECCSSCCCC--CGGGGGCTT
T ss_pred             -ccccCcccccccccccccc-ccc-cccccccccccccccccccc--cccccccccccccccccccccc--ccccccccc
Confidence             3567889999999999886 344 47888999999999887753  2346778889999999888743  234677889


Q ss_pred             CCeEecCCcccCCcccccccCCCCCcEEEccCCcccccccccccCCCCCCEEECCC
Q 048333          277 LQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQ  332 (413)
Q Consensus       277 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~  332 (413)
                      |+.+++++|.+.+.  ..++.+++|++|++++|.++ .++ .+..+++|++|++++
T Consensus       158 L~~l~l~~n~l~~i--~~l~~l~~L~~L~Ls~N~i~-~l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         158 LDTLSLEDNQISDI--VPLAGLTKLQNLYLSKNHIS-DLR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             CSEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCC-BCG-GGTTCTTCSEEEEEE
T ss_pred             cccccccccccccc--ccccCCCCCCEEECCCCCCC-CCh-hhcCCCCCCEEEccC
Confidence            99999999988742  34778899999999999887 444 578889999998864

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=3.1e-16  Score=137.85  Aligned_cols=181  Identities=18%  Similarity=0.206  Sum_probs=79.4

Q ss_pred             CCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCccccccccccccccccccccCCCCccEEeCCCC
Q 048333          134 LSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQN  213 (413)
Q Consensus       134 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~  213 (413)
                      ..+|++|++++|.++.          ..+...+.++++|++|+++++.+++.         .+..+..+++|++|++++|
T Consensus        45 ~~~L~~LdLs~~~i~~----------~~l~~l~~~c~~L~~L~L~~~~l~~~---------~~~~l~~~~~L~~L~Ls~c  105 (284)
T d2astb2          45 PFRVQHMDLSNSVIEV----------STLHGILSQCSKLQNLSLEGLRLSDP---------IVNTLAKNSNLVRLNLSGC  105 (284)
T ss_dssp             CBCCCEEECTTCEECH----------HHHHHHHTTBCCCSEEECTTCBCCHH---------HHHHHTTCTTCSEEECTTC
T ss_pred             CCCCCEEECCCCccCH----------HHHHHHHHhCCCcccccccccCCCcH---------HHHHHhcCCCCcCcccccc
Confidence            3455666666555432          11222344555666666665555432         2233445555666666554


Q ss_pred             c-CCCc-chhhhhCCCCCCEEEccCCc-Cccc-CCccc-CCCCCCcEEEecCCc--cccc-cchhhccCCCCCeEecCCc
Q 048333          214 G-FFGE-LPTSIRNLFSLEKLDLSFNK-LSGE-FPWST-GNFSSLKLLNLRSCG--FWSK-VPHSIGNFTRLQFLFLGFN  285 (413)
Q Consensus       214 ~-~~~~-~~~~l~~~~~L~~L~l~~~~-~~~~-~~~~l-~~~~~L~~L~l~~~~--~~~~-~~~~~~~~~~L~~L~l~~~  285 (413)
                      . +++. +......+++|++|++++|. ++.. ....+ ...++|+.|+++++.  +.+. +......+++|++|++++|
T Consensus       106 ~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~  185 (284)
T d2astb2         106 SGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDS  185 (284)
T ss_dssp             BSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTC
T ss_pred             ccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccc
Confidence            2 2211 11223345555555555542 2110 11111 123455555555442  1111 2222334455555555554


Q ss_pred             c-cCCcccccccCCCCCcEEEccCC-cccccccccccCCCCCCEEECCCC
Q 048333          286 N-FSGDLLGSIGNLRSLEVIYIAKC-NFSGQITSSLRNLTQLVVLDMAQN  333 (413)
Q Consensus       286 ~-~~~~~~~~l~~~~~L~~L~L~~~-~~~~~~~~~~~~~~~L~~L~l~~n  333 (413)
                      . +++..+..+..+++|++|++++| .+++.....+..+++|+.|+++++
T Consensus       186 ~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         186 VMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             TTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             cCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            2 33334444444555555555553 233333334444555555555554

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.62  E-value=1.3e-14  Score=120.38  Aligned_cols=81  Identities=22%  Similarity=0.347  Sum_probs=40.6

Q ss_pred             CCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCccccccccccccccccccccCCCCccEEeCCC
Q 048333          133 NLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQ  212 (413)
Q Consensus       133 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~  212 (413)
                      .++++++|+++++.+..            + ..+..+++|++|++++|.+++.          + .+..+++|+.|++++
T Consensus        38 ~l~~l~~L~l~~~~i~~------------l-~~l~~l~nL~~L~Ls~N~l~~~----------~-~l~~l~~L~~L~l~~   93 (199)
T d2omxa2          38 DLDQVTTLQADRLGIKS------------I-DGVEYLNNLTQINFSNNQLTDI----------T-PLKNLTKLVDILMNN   93 (199)
T ss_dssp             HHTTCCEEECTTSCCCC------------C-TTGGGCTTCCEEECCSSCCCCC----------G-GGTTCTTCCEEECCS
T ss_pred             HhcCCCEEECCCCCCCC------------c-cccccCCCcCcCccccccccCc----------c-cccCCcccccccccc
Confidence            45566666666665542            1 2345556666666666655532          1 244555555555555


Q ss_pred             CcCCCcchhhhhCCCCCCEEEccCCcC
Q 048333          213 NGFFGELPTSIRNLFSLEKLDLSFNKL  239 (413)
Q Consensus       213 ~~~~~~~~~~l~~~~~L~~L~l~~~~~  239 (413)
                      |.+.. ++ .+..++.|+.++++++..
T Consensus        94 n~~~~-~~-~l~~l~~L~~L~l~~~~~  118 (199)
T d2omxa2          94 NQIAD-IT-PLANLTNLTGLTLFNNQI  118 (199)
T ss_dssp             SCCCC-CG-GGTTCTTCSEEECCSSCC
T ss_pred             ccccc-cc-cccccccccccccccccc
Confidence            54432 21 244445555555544433

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=1.4e-15  Score=133.53  Aligned_cols=184  Identities=18%  Similarity=0.102  Sum_probs=122.7

Q ss_pred             cCCCCccEEECCCCccccccccccccccccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCc-Cccc-CC
Q 048333          167 GNLSKLLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNK-LSGE-FP  244 (413)
Q Consensus       167 ~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~-~~  244 (413)
                      ....+|++|+++++.++..        .+...+..+++|++|+++++.+.+..+..+..+++|++|++++|. +++. +.
T Consensus        43 ~~~~~L~~LdLs~~~i~~~--------~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~  114 (284)
T d2astb2          43 FSPFRVQHMDLSNSVIEVS--------TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQ  114 (284)
T ss_dssp             CCCBCCCEEECTTCEECHH--------HHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHH
T ss_pred             ccCCCCCEEECCCCccCHH--------HHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccc
Confidence            3456888888888877643        233456778888888888888776667777888888888888863 3321 22


Q ss_pred             cccCCCCCCcEEEecCCc-cccc-cchhhc-cCCCCCeEecCCcc--cCCccccc-ccCCCCCcEEEccCCc-ccccccc
Q 048333          245 WSTGNFSSLKLLNLRSCG-FWSK-VPHSIG-NFTRLQFLFLGFNN--FSGDLLGS-IGNLRSLEVIYIAKCN-FSGQITS  317 (413)
Q Consensus       245 ~~l~~~~~L~~L~l~~~~-~~~~-~~~~~~-~~~~L~~L~l~~~~--~~~~~~~~-l~~~~~L~~L~L~~~~-~~~~~~~  317 (413)
                      .....+++|++|++++|. +.+. ....+. .+++|+.|+++++.  +.+..... ...+|+|++|++++|. +++....
T Consensus       115 ~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~  194 (284)
T d2astb2         115 TLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ  194 (284)
T ss_dssp             HHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGG
T ss_pred             hhhHHHHhccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhh
Confidence            223457888888888874 3222 222232 34678888888753  33322222 3457888888888864 5656666


Q ss_pred             cccCCCCCCEEECCCCcCcceechhHhhhcccCCCeeeccCc
Q 048333          318 SLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLN  359 (413)
Q Consensus       318 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~  359 (413)
                      .+..+++|++|++++|...+...+. .+..+|+|++|++++|
T Consensus       195 ~l~~~~~L~~L~L~~C~~i~~~~l~-~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         195 EFFQLNYLQHLSLSRCYDIIPETLL-ELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             GGGGCTTCCEEECTTCTTCCGGGGG-GGGGCTTCCEEECTTS
T ss_pred             hhcccCcCCEEECCCCCCCChHHHH-HHhcCCCCCEEeeeCC
Confidence            7778888888888886433233323 5677888888888887

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=4.1e-15  Score=127.54  Aligned_cols=105  Identities=16%  Similarity=0.248  Sum_probs=52.8

Q ss_pred             cEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCccccccccccccc
Q 048333          114 KTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFG  193 (413)
Q Consensus       114 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~  193 (413)
                      +.++.++..++ .+|..+  .+++++|++++|.++.+           -+..|.++++|++|++++|.+....       
T Consensus        11 ~~i~c~~~~l~-~iP~~l--~~~l~~L~Ls~n~i~~l-----------~~~~f~~l~~L~~L~ls~n~~~~~i-------   69 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVI-----------QKGAFSGFGDLEKIEISQNDVLEVI-------   69 (242)
T ss_dssp             SEEEEESCSCS-SCCSCS--CSCCSEEEEESCCCCEE-----------CTTTTTTCTTCCEEEEESCTTCCEE-------
T ss_pred             CEEEEeCCCCC-CcCCCC--CCCCCEEECcCCcCCcc-----------ChhHhhccchhhhhhhcccccccee-------
Confidence            34555555554 344333  13566666666665522           1224556666666666666554321       


Q ss_pred             cccccccCCCCccEEeCCC-CcCCCcchhhhhCCCCCCEEEccCCcCc
Q 048333          194 ELPISMGNLGSLKELDLSQ-NGFFGELPTSIRNLFSLEKLDLSFNKLS  240 (413)
Q Consensus       194 ~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~l~~~~~L~~L~l~~~~~~  240 (413)
                       -+..+..++.++++.+.. +.+....+..+..+++|+.++++++.+.
T Consensus        70 -~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~  116 (242)
T d1xwdc1          70 -EADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK  116 (242)
T ss_dssp             -CSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCC
T ss_pred             -eccccccccccccccccccccccccccccccccccccccccchhhhc
Confidence             122345555666655443 3333333444555566666666555543

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.58  E-value=5.6e-16  Score=140.39  Aligned_cols=254  Identities=17%  Similarity=0.159  Sum_probs=149.9

Q ss_pred             hhhhhcCCCCcEEEcCCccCCC----CcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCC
Q 048333          104 ENLFEKLSNLKTLNLGDVSIDS----TIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSL  179 (413)
Q Consensus       104 ~~~~~~~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~  179 (413)
                      ...+.....|++|++++|.+..    .+...+...++|+.+.++++.......... .....+...+..+++|+.|++++
T Consensus        24 ~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~-~~~~~l~~~l~~~~~L~~L~L~~  102 (344)
T d2ca6a1          24 FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIP-EALRLLLQALLKCPKLHTVRLSD  102 (344)
T ss_dssp             SHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSH-HHHHHHHHHHTTCTTCCEEECCS
T ss_pred             HHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccc-hHHHHHHHHHhhCCCcccccccc
Confidence            4457788999999999998754    234456678999999999876432111000 00011234456789999999999


Q ss_pred             CccccccccccccccccccccCCCCccEEeCCCCcCCCcch----hhh---------hCCCCCCEEEccCCcCccc----
Q 048333          180 NELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGELP----TSI---------RNLFSLEKLDLSFNKLSGE----  242 (413)
Q Consensus       180 ~~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~----~~l---------~~~~~L~~L~l~~~~~~~~----  242 (413)
                      |.++.....     .+...+..+++|++|++++|.+.....    .++         ...+.|+.+.++++.+...    
T Consensus       103 n~i~~~~~~-----~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~  177 (344)
T d2ca6a1         103 NAFGPTAQE-----PLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKE  177 (344)
T ss_dssp             CCCCTTTHH-----HHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHH
T ss_pred             ccccccccc-----chhhhhcccccchheecccccccccccccccccccccccccccccCcccceeeccccccccccccc
Confidence            988764321     234456678899999999998742211    111         2356777888777765422    


Q ss_pred             CCcccCCCCCCcEEEecCCccccc-----cchhhccCCCCCeEecCCcccCCc----ccccccCCCCCcEEEccCCcccc
Q 048333          243 FPWSTGNFSSLKLLNLRSCGFWSK-----VPHSIGNFTRLQFLFLGFNNFSGD----LLGSIGNLRSLEVIYIAKCNFSG  313 (413)
Q Consensus       243 ~~~~l~~~~~L~~L~l~~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~L~~~~~~~  313 (413)
                      +...+...+.++.+++++|.+...     +...+..+++|+.|++++|.+.+.    +...+..+++|++|++++|.+++
T Consensus       178 l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~  257 (344)
T d2ca6a1         178 WAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSA  257 (344)
T ss_dssp             HHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCH
T ss_pred             ccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCc
Confidence            222334456677777777766332     223345566677777777665432    22334556667777777776653


Q ss_pred             c----cccccc--CCCCCCEEECCCCcCcceec--hhHhh-hcccCCCeeeccCccccc
Q 048333          314 Q----ITSSLR--NLTQLVVLDMAQNSYGGTVE--LDVLL-TSWKNLEALDISLNRSSV  363 (413)
Q Consensus       314 ~----~~~~~~--~~~~L~~L~l~~n~~~~~~~--~~~~~-~~~~~L~~L~l~~~~i~~  363 (413)
                      .    +...+.  ..+.|+.|++++|.+.....  +...+ .+++.|++|++++|.+..
T Consensus       258 ~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         258 RGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             HHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             hhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence            3    222222  23456677777776653211  11122 245667777777666543

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=1.1e-14  Score=124.93  Aligned_cols=134  Identities=16%  Similarity=0.072  Sum_probs=82.1

Q ss_pred             CCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCC-Cccccccccc
Q 048333          111 SNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSL-NELQGEAASF  189 (413)
Q Consensus       111 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~-~~i~~~~~~~  189 (413)
                      +++++|++++|.++...+..|.++++|++|++++|.+...          .-+..+.+++.++++.+.. +.+...    
T Consensus        29 ~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~----------i~~~~f~~l~~l~~l~~~~~n~l~~~----   94 (242)
T d1xwdc1          29 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEV----------IEADVFSNLPKLHEIRIEKANNLLYI----   94 (242)
T ss_dssp             SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCE----------ECSSSEESCTTCCEEEEECCTTCCEE----
T ss_pred             CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccce----------eecccccccccccccccccccccccc----
Confidence            5789999999998754555788899999999999887531          1234577788889888754 455433    


Q ss_pred             cccccccccccCCCCccEEeCCCCcCCCcch-hhhhCCCCCCEEEccCCcCcccCCcccCCC-CCCcEEEecCCcc
Q 048333          190 RCFGELPISMGNLGSLKELDLSQNGFFGELP-TSIRNLFSLEKLDLSFNKLSGEFPWSTGNF-SSLKLLNLRSCGF  263 (413)
Q Consensus       190 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~  263 (413)
                           .+..+.++++|++++++++.+....+ ..+..+..+..+...++.+....+..+..+ ..++.+++.++.+
T Consensus        95 -----~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l  165 (242)
T d1xwdc1          95 -----NPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI  165 (242)
T ss_dssp             -----CTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred             -----ccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccc
Confidence                 34567888999999999988753221 112223333333334444332222333322 2445555555444

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.55  E-value=1e-14  Score=120.16  Aligned_cols=173  Identities=20%  Similarity=0.227  Sum_probs=122.4

Q ss_pred             ccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcc-cCCcccCCCCCCcEEEecCCccccccchhhccCCCCCeEecC
Q 048333          205 LKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSG-EFPWSTGNFSSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLG  283 (413)
Q Consensus       205 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  283 (413)
                      .+.++.+++++. .+|..+  .+++++|++++|.++. ..+..+..+++|+.|+++++.+....+..+..+++|++|+++
T Consensus        10 ~~~v~Cs~~~L~-~iP~~l--p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls   86 (192)
T d1w8aa_          10 GTTVDCTGRGLK-EIPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TTEEECTTSCCS-SCCSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCEEEEeCCCcC-ccCCCC--CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeec
Confidence            357788888776 566544  2578889999888864 345566778888888888888877777788888888888888


Q ss_pred             CcccCCcccccccCCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcceechhHhhhcccCCCeeeccCccccc
Q 048333          284 FNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSV  363 (413)
Q Consensus       284 ~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~  363 (413)
                      +|.+....+.+|..+++|+.|+|++|+++...+..|..+++|++|++++|.+....... .+..  .++.+.+..+.   
T Consensus        87 ~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~-~~~~--~l~~~~l~~~~---  160 (192)
T d1w8aa_          87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLA-WFAE--WLRKKSLNGGA---  160 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGH-HHHH--HHHHHCCSGGG---
T ss_pred             cccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchH-HHhh--hhhhhcccCCC---
Confidence            88888666677888888888888888888666777888888888888888876544423 2222  24455555555   


Q ss_pred             cceeeeccccccccccceeeeccCCCCC
Q 048333          364 LTKATFDATTDTTSQKIQYRGLRSCNLT  391 (413)
Q Consensus       364 l~~~~~~~~~~~~~~~L~~L~l~~~~l~  391 (413)
                         .....|.  .+..++.++++.+.++
T Consensus       161 ---~~c~~p~--~l~~~~l~~L~~n~l~  183 (192)
T d1w8aa_         161 ---ARCGAPS--KVRDVQIKDLPHSEFK  183 (192)
T ss_dssp             ---CBBCSST--TTTTSBGGGSCTTTCC
T ss_pred             ---eEeCCCh--hhcCCEeeecCHhhCc
Confidence               2223332  2344556666666665

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.55  E-value=1.8e-14  Score=118.77  Aligned_cols=171  Identities=19%  Similarity=0.121  Sum_probs=106.2

Q ss_pred             ccEEECCCCccccccccccccccccccccCCCCccEEeCCCCcCCCcc-hhhhhCCCCCCEEEccCCcCcccCCcccCCC
Q 048333          172 LLHLDLSLNELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGEL-PTSIRNLFSLEKLDLSFNKLSGEFPWSTGNF  250 (413)
Q Consensus       172 L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~  250 (413)
                      .+.++.++++++.          +|..+.  +++++|++++|.+...+ +..+..+++|+.|++++|.+....+..+..+
T Consensus        10 ~~~v~Cs~~~L~~----------iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~   77 (192)
T d1w8aa_          10 GTTVDCTGRGLKE----------IPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGA   77 (192)
T ss_dssp             TTEEECTTSCCSS----------CCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTC
T ss_pred             CCEEEEeCCCcCc----------cCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccc
Confidence            3567777777663          344332  46777777777775433 4556777777777777777766666677777


Q ss_pred             CCCcEEEecCCccccccchhhccCCCCCeEecCCcccCCcccccccCCCCCcEEEccCCccccccc-ccccCCCCCCEEE
Q 048333          251 SSLKLLNLRSCGFWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQIT-SSLRNLTQLVVLD  329 (413)
Q Consensus       251 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~-~~~~~~~~L~~L~  329 (413)
                      ++|++|++++|.+....+..|.++++|++|++++|.+....+.+|..+++|+++++++|.+..... .++  ...++.+.
T Consensus        78 ~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~--~~~l~~~~  155 (192)
T d1w8aa_          78 SHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWF--AEWLRKKS  155 (192)
T ss_dssp             TTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHH--HHHHHHHC
T ss_pred             cccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHHH--hhhhhhhc
Confidence            777777777777765556667777777777777777776556667777777777777777653211 111  12234444


Q ss_pred             CCCCcCcceechhHhhhcccCCCeeeccCccc
Q 048333          330 MAQNSYGGTVELDVLLTSWKNLEALDISLNRS  361 (413)
Q Consensus       330 l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~i  361 (413)
                      +..+.+....+     ..+..++.++++.+.+
T Consensus       156 l~~~~~~c~~p-----~~l~~~~l~~L~~n~l  182 (192)
T d1w8aa_         156 LNGGAARCGAP-----SKVRDVQIKDLPHSEF  182 (192)
T ss_dssp             CSGGGCBBCSS-----TTTTTSBGGGSCTTTC
T ss_pred             ccCCCeEeCCC-----hhhcCCEeeecCHhhC
Confidence            55554443222     1233455556666653

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=1.3e-13  Score=109.71  Aligned_cols=40  Identities=20%  Similarity=0.173  Sum_probs=15.1

Q ss_pred             cCCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcC
Q 048333          296 GNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSY  335 (413)
Q Consensus       296 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~  335 (413)
                      ..+++|++|++++|.++...+..+..+++|+.|++++|.+
T Consensus        60 ~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N~i   99 (162)
T d1a9na_          60 PLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSL   99 (162)
T ss_dssp             CCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCC
T ss_pred             ccCcchhhhhcccccccCCCccccccccccccceeccccc
Confidence            3334444444444444322222223334444444444433

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=6.1e-13  Score=105.74  Aligned_cols=108  Identities=19%  Similarity=0.146  Sum_probs=51.1

Q ss_pred             cCCCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCcccccccc
Q 048333          109 KLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAAS  188 (413)
Q Consensus       109 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~  188 (413)
                      ++.++++|++++|+++. ++..+..+++|++|++++|.++.+             ..+..+++|+.|++++|.++...  
T Consensus        16 n~~~lr~L~L~~n~I~~-i~~~~~~l~~L~~L~Ls~N~i~~l-------------~~~~~l~~L~~L~ls~N~i~~l~--   79 (162)
T d1a9na_          16 NAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL-------------DGFPLLRRLKTLLVNNNRICRIG--   79 (162)
T ss_dssp             CTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE-------------CCCCCCSSCCEEECCSSCCCEEC--
T ss_pred             CcCcCcEEECCCCCCCc-cCccccccccCCEEECCCCCCCcc-------------CCcccCcchhhhhcccccccCCC--
Confidence            44455666666665542 344444555566666666555421             22445555555555555554321  


Q ss_pred             ccccccccccccCCCCccEEeCCCCcCCCcc-hhhhhCCCCCCEEEccCCcC
Q 048333          189 FRCFGELPISMGNLGSLKELDLSQNGFFGEL-PTSIRNLFSLEKLDLSFNKL  239 (413)
Q Consensus       189 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~  239 (413)
                             +..+..+++|++|++++|.+.... ...+..+++|+++++++|.+
T Consensus        80 -------~~~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i  124 (162)
T d1a9na_          80 -------EGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPV  124 (162)
T ss_dssp             -------SCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGG
T ss_pred             -------ccccccccccccceeccccccccccccccccccccchhhcCCCcc
Confidence                   111234455555555555543211 12334444444444444443

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.39  E-value=1e-12  Score=99.40  Aligned_cols=85  Identities=22%  Similarity=0.289  Sum_probs=32.0

Q ss_pred             ccCCCCCeEecCCcccCCcccccccCCCCCcEEEccCCcccccccccccCCCCCCEEECCCCcCcceechhHhhhcccCC
Q 048333          272 GNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCNFSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNL  351 (413)
Q Consensus       272 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L  351 (413)
                      ..+++|++|++++|.+. ..+..+..+++|+.|++++|.+++ ++ .+..+++|+.|++++|.+.+...+. .+..+++|
T Consensus        17 ~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~-~l~~~~~L   92 (124)
T d1dcea3          17 EQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQ-PLVSCPRL   92 (124)
T ss_dssp             GGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTG-GGGGCTTC
T ss_pred             ccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCCccCCCCCch-hhcCCCCC
Confidence            33334444444444433 122233334444444444444331 11 2333444444444444443222211 33344444


Q ss_pred             CeeeccCcc
Q 048333          352 EALDISLNR  360 (413)
Q Consensus       352 ~~L~l~~~~  360 (413)
                      ++|++++|+
T Consensus        93 ~~L~l~~N~  101 (124)
T d1dcea3          93 VLLNLQGNS  101 (124)
T ss_dssp             CEEECTTSG
T ss_pred             CEEECCCCc
Confidence            444444444

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.36  E-value=2.8e-12  Score=96.85  Aligned_cols=102  Identities=25%  Similarity=0.296  Sum_probs=66.3

Q ss_pred             cEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCccccccccccccc
Q 048333          114 KTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASFRCFG  193 (413)
Q Consensus       114 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~  193 (413)
                      |+|++++|.++ .++ .+..+++|++|++++|.++            .+|..+..+++|+.|++++|.+++.        
T Consensus         1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~------------~lp~~~~~l~~L~~L~l~~N~i~~l--------   58 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR------------ALPPALAALRCLEVLQASDNALENV--------   58 (124)
T ss_dssp             SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC------------CCCGGGGGCTTCCEEECCSSCCCCC--------
T ss_pred             CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC------------cchhhhhhhhccccccccccccccc--------
Confidence            46777777776 333 3667777777777777765            3455666777777777777777632        


Q ss_pred             cccccccCCCCccEEeCCCCcCCCcc-hhhhhCCCCCCEEEccCCcCc
Q 048333          194 ELPISMGNLGSLKELDLSQNGFFGEL-PTSIRNLFSLEKLDLSFNKLS  240 (413)
Q Consensus       194 ~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~  240 (413)
                        | .+..+++|++|++++|.+.... ...+..+++|+.+++++|.+.
T Consensus        59 --~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          59 --D-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             --G-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             --C-ccccccccCeEECCCCccCCCCCchhhcCCCCCCEEECCCCcCC
Confidence              2 3566677777777777765322 234566666777777666654

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.12  E-value=8.5e-13  Score=108.69  Aligned_cols=112  Identities=23%  Similarity=0.219  Sum_probs=69.0

Q ss_pred             hhhhhcCCCCcEEEcCCccCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCccc
Q 048333          104 ENLFEKLSNLKTLNLGDVSIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQ  183 (413)
Q Consensus       104 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~  183 (413)
                      +..+..+++|++|++++|.+.. ++ .+..+++|++|++++|.+..            ++.....+++|+.|++++|.++
T Consensus        41 ~~sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~~------------i~~~~~~~~~L~~L~l~~N~i~  106 (198)
T d1m9la_          41 DATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKK------------IENLDAVADTLEELWISYNQIA  106 (198)
T ss_dssp             HHHHHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEECS------------CSSHHHHHHHCCEEECSEEECC
T ss_pred             hhHHhcccccceeECcccCCCC-cc-cccCCccccChhhccccccc------------cccccccccccccccccccccc
Confidence            4456677777777777777763 33 36677777777777777652            3333333456777777777766


Q ss_pred             cccccccccccccccccCCCCccEEeCCCCcCCCcc-hhhhhCCCCCCEEEccCCcCc
Q 048333          184 GEAASFRCFGELPISMGNLGSLKELDLSQNGFFGEL-PTSIRNLFSLEKLDLSFNKLS  240 (413)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~  240 (413)
                      ..           ..+..+++|+.|++++|.+.... ...+..+++|+.|++++|++.
T Consensus       107 ~l-----------~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~  153 (198)
T d1m9la_         107 SL-----------SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             CH-----------HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHH
T ss_pred             cc-----------ccccccccccccccccchhccccccccccCCCccceeecCCCccc
Confidence            32           23455666777777777665321 134566666666666666553

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.11  E-value=1.6e-12  Score=107.00  Aligned_cols=127  Identities=22%  Similarity=0.249  Sum_probs=82.9

Q ss_pred             CCcEEEcCCc--cCCCCcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCCCccccccccc
Q 048333          112 NLKTLNLGDV--SIDSTIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSLNELQGEAASF  189 (413)
Q Consensus       112 ~L~~L~l~~~--~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~  189 (413)
                      .++.+++.+.  .+. .++..+..+++|++|++++|.++.            + ..+..+++|+.|++++|.+++     
T Consensus        24 ~~~~~~l~~~~~~i~-~l~~sl~~L~~L~~L~Ls~n~I~~------------i-~~l~~l~~L~~L~Ls~N~i~~-----   84 (198)
T d1m9la_          24 EAEKVELHGMIPPIE-KMDATLSTLKACKHLALSTNNIEK------------I-SSLSGMENLRILSLGRNLIKK-----   84 (198)
T ss_dssp             TCSCEECCBCCTTCC-CCHHHHHHTTTCCEEECSEEEESC------------C-CCHHHHTTCCEEECCEEEECS-----
T ss_pred             ccceeeeecccCchh-hhhhHHhcccccceeECcccCCCC------------c-ccccCCccccChhhccccccc-----
Confidence            4555565543  122 345667778888888888888763            3 246777888888888888764     


Q ss_pred             cccccccccccCCCCccEEeCCCCcCCCcchhhhhCCCCCCEEEccCCcCcccC-CcccCCCCCCcEEEecCCccc
Q 048333          190 RCFGELPISMGNLGSLKELDLSQNGFFGELPTSIRNLFSLEKLDLSFNKLSGEF-PWSTGNFSSLKLLNLRSCGFW  264 (413)
Q Consensus       190 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~  264 (413)
                           ++.....+++|+.|++++|.+.. + ..+..+++|+.|++++|.+.... ...+..+++|+.|++++|.+.
T Consensus        85 -----i~~~~~~~~~L~~L~l~~N~i~~-l-~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~  153 (198)
T d1m9la_          85 -----IENLDAVADTLEELWISYNQIAS-L-SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             -----CSSHHHHHHHCCEEECSEEECCC-H-HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHH
T ss_pred             -----ccccccccccccccccccccccc-c-ccccccccccccccccchhccccccccccCCCccceeecCCCccc
Confidence                 23333344568888888887763 3 34667777888888877765321 134566777777777777653

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=2.3e-10  Score=89.95  Aligned_cols=108  Identities=19%  Similarity=0.129  Sum_probs=81.5

Q ss_pred             CCCCeEecCCcccCCcccccccCCCCCcEEEccCCc-ccccccccccCCCCCCEEECCCCcCcceechhHhhhcccCCCe
Q 048333          275 TRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKCN-FSGQITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEA  353 (413)
Q Consensus       275 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~-~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~  353 (413)
                      ...+.++..++.+. ..+..+..++++++|++.+++ ++...+..|..+++|+.|++++|.+....+ . ++..+++|++
T Consensus         8 ~~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~-~-~f~~l~~L~~   84 (156)
T d2ifga3           8 HGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAP-D-AFHFTPRLSR   84 (156)
T ss_dssp             SSSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECT-T-GGGSCSCCCE
T ss_pred             CCCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCccc-c-cccccccccc
Confidence            34566777777776 356667778899999997664 665556778889999999999998875444 3 7888999999


Q ss_pred             eeccCccccccceeeeccccccccccceeeeccCCCCC
Q 048333          354 LDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLT  391 (413)
Q Consensus       354 L~l~~~~i~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~  391 (413)
                      |++++|+++.++...+.      ..+|++|++++|.+.
T Consensus        85 L~Ls~N~l~~l~~~~~~------~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          85 LNLSFNALESLSWKTVQ------GLSLQELVLSGNPLH  116 (156)
T ss_dssp             EECCSSCCSCCCSTTTC------SCCCCEEECCSSCCC
T ss_pred             eeccCCCCcccChhhhc------cccccccccCCCccc
Confidence            99999997776554432      235889999998875

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=6.5e-09  Score=81.38  Aligned_cols=104  Identities=9%  Similarity=-0.051  Sum_probs=57.4

Q ss_pred             EEEccCCcCcccCCcccCCCCCCcEEEecCCc-cccccchhhccCCCCCeEecCCcccCCcccccccCCCCCcEEEccCC
Q 048333          231 KLDLSFNKLSGEFPWSTGNFSSLKLLNLRSCG-FWSKVPHSIGNFTRLQFLFLGFNNFSGDLLGSIGNLRSLEVIYIAKC  309 (413)
Q Consensus       231 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~  309 (413)
                      .++.+++... ..|..+..+++|++|++.++. +....+..|.++++|+.|++++|.+....+.+|..+++|++|+|++|
T Consensus        12 ~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N   90 (156)
T d2ifga3          12 GLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (156)
T ss_dssp             CEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             eEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCC
Confidence            3444444333 233444455566666665443 43333445666666666666666666544555666666666666666


Q ss_pred             cccccccccccCCCCCCEEECCCCcCc
Q 048333          310 NFSGQITSSLRNLTQLVVLDMAQNSYG  336 (413)
Q Consensus       310 ~~~~~~~~~~~~~~~L~~L~l~~n~~~  336 (413)
                      +++...+..+ ....|+.|++++|.+.
T Consensus        91 ~l~~l~~~~~-~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          91 ALESLSWKTV-QGLSLQELVLSGNPLH  116 (156)
T ss_dssp             CCSCCCSTTT-CSCCCCEEECCSSCCC
T ss_pred             CCcccChhhh-ccccccccccCCCccc
Confidence            6663333333 3335677777777664

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=2.4e-08  Score=78.67  Aligned_cols=88  Identities=17%  Similarity=0.169  Sum_probs=63.3

Q ss_pred             ccccccCCCCCCEEECCCCcCcceechhHhhhcccCCCeeeccCccccccceeeeccccccccccceeeeccCCCCCCc-
Q 048333          315 ITSSLRNLTQLVVLDMAQNSYGGTVELDVLLTSWKNLEALDISLNRSSVLTKATFDATTDTTSQKIQYRGLRSCNLTKF-  393 (413)
Q Consensus       315 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~l-  393 (413)
                      +......++.|++|++++|.+++..++...+..+++|+.|++++|.|+++++...     +....|++|++++|.+... 
T Consensus        57 l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~-----l~~~~L~~L~L~~Npl~~~~  131 (162)
T d1koha1          57 LRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDK-----IKGLKLEELWLDGNSLSDTF  131 (162)
T ss_dssp             HHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHH-----HTTCCCSSCCCTTSTTSSSS
T ss_pred             hHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhh-----hhccccceeecCCCCcCcCc
Confidence            3444456888999999999888655444467788999999999999877654322     1344688999999988732 


Q ss_pred             -------chHhhcCCCCcEEe
Q 048333          394 -------PNFLENQNHLVILN  407 (413)
Q Consensus       394 -------~~~~~~l~~L~~L~  407 (413)
                             ...+..+|+|+.||
T Consensus       132 ~~~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         132 RDQSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             SSHHHHHHHHHTTSTTCCEET
T ss_pred             ccchhHHHHHHHHCCCCCEEC
Confidence                   13466789999886

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.18  E-value=5.9e-07  Score=70.77  Aligned_cols=121  Identities=19%  Similarity=0.146  Sum_probs=74.6

Q ss_pred             hhhhcCCCCcEEEcCCc-cCCC----CcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCC
Q 048333          105 NLFEKLSNLKTLNLGDV-SIDS----TIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSL  179 (413)
Q Consensus       105 ~~~~~~~~L~~L~l~~~-~~~~----~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~  179 (413)
                      ....+.+.|++|+|+++ .+..    .+...+...+.|++|++++|.+.+-..       ..+...+...+.|++|++++
T Consensus         9 ~l~~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~-------~~la~~L~~n~~L~~L~L~~   81 (167)
T d1pgva_           9 RLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEA-------RGLIELIETSPSLRVLNVES   81 (167)
T ss_dssp             HHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHH-------TTHHHHHHHCSSCCEEECCS
T ss_pred             HHHhCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHH-------HHHhhhhhhcccccceeeeh
Confidence            34456788999999874 4542    233445667788888888887764211       12334455667888888888


Q ss_pred             CccccccccccccccccccccCCCCccEEeCCCCcCCCc-------chhhhhCCCCCCEEEccCC
Q 048333          180 NELQGEAASFRCFGELPISMGNLGSLKELDLSQNGFFGE-------LPTSIRNLFSLEKLDLSFN  237 (413)
Q Consensus       180 ~~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-------~~~~l~~~~~L~~L~l~~~  237 (413)
                      |.+++....     .+...+...+.|++|+++++.....       +..++...++|+.|+++.+
T Consensus        82 n~i~~~g~~-----~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_          82 NFLTPELLA-----RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             SBCCHHHHH-----HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             hhcchHHHH-----HHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence            887764321     1344566677788888877654321       3344455566666666544

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=3.9e-08  Score=77.37  Aligned_cols=43  Identities=21%  Similarity=0.358  Sum_probs=24.0

Q ss_pred             hhhcCCCCcEEEcCCccCCCC--cCccccCCCCCcEEEccCCccc
Q 048333          106 LFEKLSNLKTLNLGDVSIDST--IPHNIKNLSSLTFVSLRNCELQ  148 (413)
Q Consensus       106 ~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~l~  148 (413)
                      +...+++|++|++++|+++..  ++..+..+++|++|++++|.+.
T Consensus        60 ~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~  104 (162)
T d1koha1          60 IEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK  104 (162)
T ss_dssp             HHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCC
T ss_pred             HHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccc
Confidence            344566666666666666532  2233445566666666666555

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.11  E-value=2.6e-06  Score=66.91  Aligned_cols=90  Identities=17%  Similarity=0.144  Sum_probs=45.3

Q ss_pred             cCCCCCeEecCCc-ccCCc----ccccccCCCCCcEEEccCCccccc----ccccccCCCCCCEEECCCCcCccee--ch
Q 048333          273 NFTRLQFLFLGFN-NFSGD----LLGSIGNLRSLEVIYIAKCNFSGQ----ITSSLRNLTQLVVLDMAQNSYGGTV--EL  341 (413)
Q Consensus       273 ~~~~L~~L~l~~~-~~~~~----~~~~l~~~~~L~~L~L~~~~~~~~----~~~~~~~~~~L~~L~l~~n~~~~~~--~~  341 (413)
                      +.++|+.|+++++ .+.+.    +...+...+.|++|++++|.+.+.    +...+...+.|++|++++|.+.+..  .+
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l   92 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL   92 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence            3456666666653 34322    222344455666666666665422    2233344556666666666655321  11


Q ss_pred             hHhhhcccCCCeeeccCcccc
Q 048333          342 DVLLTSWKNLEALDISLNRSS  362 (413)
Q Consensus       342 ~~~~~~~~~L~~L~l~~~~i~  362 (413)
                      ...+...+.|++|++++|.+.
T Consensus        93 ~~aL~~n~sL~~L~l~~n~~~  113 (167)
T d1pgva_          93 LRSTLVTQSIVEFKADNQRQS  113 (167)
T ss_dssp             HHHTTTTCCCSEEECCCCSSC
T ss_pred             HHHHHhCCcCCEEECCCCcCC
Confidence            223444455666666655543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.86  E-value=9.4e-06  Score=63.58  Aligned_cols=113  Identities=16%  Similarity=0.161  Sum_probs=54.3

Q ss_pred             CCCCcEEEccC-Cccccc----ccccccCCCCCCEEECCCCcCccee--chhHhhhcccCCCeeeccCccccccceeeec
Q 048333          298 LRSLEVIYIAK-CNFSGQ----ITSSLRNLTQLVVLDMAQNSYGGTV--ELDVLLTSWKNLEALDISLNRSSVLTKATFD  370 (413)
Q Consensus       298 ~~~L~~L~L~~-~~~~~~----~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~  370 (413)
                      .|.|++|++++ +.++..    +...+...++|++|++++|.+....  .+...+...+.++.+++++|.+..-+  ...
T Consensus        16 ~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g--~~~   93 (166)
T d1io0a_          16 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG--ILA   93 (166)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH--HHH
T ss_pred             CCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchh--HHH
Confidence            45555555554 233321    2333445556666666666554321  11224445566666666666543211  011


Q ss_pred             ccccc-ccccceeeec--cCCCCC-----CcchHhhcCCCCcEEeCCCCC
Q 048333          371 ATTDT-TSQKIQYRGL--RSCNLT-----KFPNFLENQNHLVILNLSDNR  412 (413)
Q Consensus       371 ~~~~~-~~~~L~~L~l--~~~~l~-----~l~~~~~~l~~L~~L~l~~n~  412 (413)
                      ....+ ..++|+++++  +++.+.     .+...+..+++|+.|++..++
T Consensus        94 l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          94 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence            11111 4455655443  344554     344556677777777776553

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.78  E-value=3.2e-06  Score=66.35  Aligned_cols=121  Identities=17%  Similarity=0.181  Sum_probs=75.6

Q ss_pred             hhhhcCCCCcEEEcCC-ccCCC----CcCccccCCCCCcEEEccCCcccccchhhhhhcccCCCccccCCCCccEEECCC
Q 048333          105 NLFEKLSNLKTLNLGD-VSIDS----TIPHNIKNLSSLTFVSLRNCELQAMCSFFLIQISGRIPSSLGNLSKLLHLDLSL  179 (413)
Q Consensus       105 ~~~~~~~~L~~L~l~~-~~~~~----~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~  179 (413)
                      .+..+.+.|++|++++ +.++.    .+..++...++|++|++++|.+.....       ..+...+...+.++.+++++
T Consensus        11 ~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~-------~~L~~~l~~~~~l~~l~l~~   83 (166)
T d1io0a_          11 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVA-------FALAEMLKVNNTLKSLNVES   83 (166)
T ss_dssp             HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHH-------HHHHHHHHHCSSCCEEECCS
T ss_pred             HHHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHH-------HHHHHHHhhcccchhhhhcc
Confidence            3455678999999987 44543    234445577889999999888764211       12233455667888888888


Q ss_pred             CccccccccccccccccccccCCCCccEEeCC--CCcCCC----cchhhhhCCCCCCEEEccCC
Q 048333          180 NELQGEAASFRCFGELPISMGNLGSLKELDLS--QNGFFG----ELPTSIRNLFSLEKLDLSFN  237 (413)
Q Consensus       180 ~~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~--~~~~~~----~~~~~l~~~~~L~~L~l~~~  237 (413)
                      +.+.+....     .+...+...+.|+.++++  ++.+..    .+..++...++|+.|++..+
T Consensus        84 ~~~~~~g~~-----~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_          84 NFISGSGIL-----ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             SCCCHHHHH-----HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             ccccchhHH-----HHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCC
Confidence            887654321     234556667778776654  444432    23445556677777777654