Citrus Sinensis ID: 048351

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850
Protein Sequence
MSSKWFILFQYRVLFSAIILLHLEPKTADSSSIRCIEEERKALLKFKQGLVDEFGFLSSWGSEGEKKDCCNWRGVRCSNQTGHVKVLDLHGTGRVKVLDIQTRVMSGNASLRGTLNPALLKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSLPSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGKIPTGTQLQSFNASVYDGNPELCGLPLPSKCWDEESAPGPAITKGRDDADTSEDEDQFITLGFFVTLILGFIVGFWGVCGTLLLNNSWKHCFYNFLTVTKDWLYVTAVVNIGKIQQKMRS
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccEEEccccccEEEEEccccccccccccHHHcccccccccEEccccccccccccEEEccccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccHHHHcccccccEEEccccccccccccHHHHcccccccEEEccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccEEEcccccccccccccccccccccccccccccEEEcccccccccccHHHHHccccccEEEccccccEEEccccccccccccccEEEccccccccccccccccccEEEccccccccccccccccccccccEEEcccccccccccHHHcccccccEEEccccccEEcccccccccccccEEEccccEEEEcccHHHHHcccccEEEcccccccccccHHHHHccccccEEEccccccEEcccccccccccccEEEcccccccccccHHcHHHHcccccccccccccEEEEEccccccccccEEEEEEEEEEEcccccEEcccccccEEEEcccccccccccHHHHccccccccccccccccccccHHHHccccccEEccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEEHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcEEEEEEEHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHccccccccccccccccccccccEEEEEEcccccEEEEEEcccccccccccccEEEEcccccccccccHHHHccccccEEEccccccccccccHHHccccccEEEEcccccccccccHHHccccccEEEEcccccccccccHHHHHcccccEEEEEccccccccccccHHHcccccccEEEccccccccccccccccHHHcccccccEEEcccccccccccHHHcccccccHHHccccccEEEEEccccccccccHHHccccccEEEEEccccccccccHHHHHccccccccccccHHHccccccEEEEcccccccccccHHHHHHHHHccEEEcccccccccccHHHccccccEEEEEEcccccccccccccccccEEEEEccccccccccHHHHccccccEEEEcccccccccccHHHccccccEEEEcccccccccccHcHccccccEEEEEccccccccccHHHHcccccEEEEcccccccccccHHHHcccccccEEEccccccEEcccHHHHHcccccEEEccccEEEEEcccHHccHHHHHHccccccccccccccccHHHccccccEEEEcccccccccccHHHcccccEEEEEcccccccccccHHHHcHHHHEEEEcccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccccccHHHccHHHcccccEEEcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MSSKWFILFQYRVLFSAIILLhlepktadsssiRCIEEERKALLKFKQGLVDefgflsswgsegekkdccnwrgvrcsnqtghvkvldlhgtgrvkVLDIQTRVmsgnaslrgtlNPALLKLHYLRHLDlsfnnfsgsqipmfiGSLSKLEYLDLFaasfsgpippllgnlsrLQYLSLGYNKLLRAGNLDWISQLFSLRYldlsscnlskstdwlqevdkipslktLYLEQcdlqlqptihrsfshlnsspsletlglsynnltasiypwlfnvssipdapgpmislrtltlsdneldgeIPKFFQNMFKleglslrgnslegvisehffsnfsylkmgphfpkwlqtqkhfsvldissagisdsipdwfsdtshkladlnfshnqmtgrfpnyiSSMFilespgidissnhlegpspslpsnafyidlsknkfsgpisflcsfsgqnlvyLDLSsnllsgklpdcwlQFNMLRILNLANnnfsgkipnscgYLQKMLTLSlhhnnfsgelpSLLKNFTHLRVVALEensisgnipawIGESLLNLVVLDlrsnrfygkipfqlchladIQILDLslnnisgnipkcfnnftamtqersynssaitfsyavpsrttmlpvHIFFDIVLLTWKGSEYEYKNTLGLVksvdlssnklggevpEEIMDLVGLIGlnlsrnnltgyitpkigqlqsldfldlsrnqfsggipsslsQVNRLSVMDlshnnlsgkiptgtqlqsfnasvydgnpelcglplpskcwdeesapgpaitkgrddadtsededqFITLGFFVTLILGFIVGFWGVCGTLLLNNSWKHCFYNFLTVTKDWLYVTAVVNIGKIQQKMRS
Flexible Loop (DISEMBL)
MSSKWFILFQYRVLFSAIILLHLepktadsssiRCIEEERKALLKFKQGLVDEFGflsswgsegeKKDCCNWRGVRCSNQtghvkvldlhgtgrVKVLDIQTRVMSGNASLRGTLNPALLKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSLPSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGKIPTGTQLQSFNASVYDGNPELCGLPLPSKCWDEESAPGPAITKGRDDADTSEDEDQFITLGFFVTLILGFIVGFWGVCGTLLLNNSWKHCFYNFLTVTKDWLYVTAVVNIGkiqqkmrs
Low Complexity Region (SEG)
MSSKWFILFQYRVLFSAIILLHLEPKTADSSSIRCIEEERKALLKFKQGLVDEFGFLSSWGSEGEKKDCCNWRGVRCSNQTGHVKVLDLHGTGRVKVLDIQTRVMSGNASLRGTLNPAllklhylrhldlSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSLPSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGKIPTGTQLQSFNASVYDGNPELCGLPLPSKCWDEESAPGPAITKGRDDADTSEDEDQFITLGFFVTLILGFIVGFWGVCGTLLLNNSWKHCFYNFLTVTKDWLYVTAVVNIGKIQQKMRS
Disordered region (IsUnstruct)
***KWFILFQYRVLFSAIILLHLEPKTADSSSIRCIEEERKALLKFKQGLVDEFGFLSSWGSEGEKKDCCNWRGVRCSNQTGHVKVLDLHGTGRVKVLDIQTRVMSGNASLRGTLNPALLKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGID****************AFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQF*********************************LQSFNASVYDGNPELCGLPLPSKCW************************QFITLGFFVTLILGFIVGFWGVCGTLLLNNSWKHCFYNFLTVTKDWLYVTAVVNIGKI******
Disordered Region (DISOPRED)
***KWFILFQYRVLFSAIILLHLEPKTADSSS**CIEEERKALLKFKQGLVDEFGFLSSWGSEGEKKDCCNWRGVRCSNQTGHVKVLDLHGTGRVKVLDIQTRVMSGNASLRGTLNPALLKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSLPSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERS**SSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGKIPTGTQLQSFNASVYDGNPELCGLPLPS**************************DQFITLGFFVTLILGFIVGFWGVCGTLLLNNSWKHCFYNFLTVTKDWLYVTAVVNIGKIQQKM**
Disordered Region (DISEMBL)
MSSKWFILFQYRVLFSAIILLHLEPKTADSSSIRCIEEERKALLKFKQGLVDEFGFLSSWGSEGEKKDCCNWRGVRCSNQTGHVKVLDLHGTGRVKVLDIQTRVMSGNASLRGTLNPALLKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSLPSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGKIPTGTQLQSFNASVYDGNPELCGLPLPSKCWDEE******************DEDQFITLGFFVTLILGFIVGFWGVCGTLLLNNSWKHCFYNFLTVTKDWLYVTAVVNIGKIQQKMRS
Disordered Region (DISPRO)
***KWFILFQYRVLFSAIILLHLEPKTADSSSIRCIEEERKALLKFKQGLVDEFGFLSSWGSEGEKKDCCNWRGVRCSNQTGHVKVLDLHGTGRVKVLDIQTRVMSGNASLRGTLNPALLKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSLPSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGKIPTGTQLQSFNASVYDGNPELCGLPLPSKC*******************TSEDEDQFITLGFFVTLILGFIVGFWGVCGTLLLNNSWKHCFYNFLTVTKDWLYVTAVVNIGKIQQKM**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSKWFILFQYRVLFSAIILLHLEPKTADSSSIRCIEEERKALLKFKQGLVDEFGFLSSWGSEGEKKDCCNWRGVRCSNQTGHVKVLDLHGTGRVKVLDIQTRVMSGNASLRGTLNPALLKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSLPSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGKIPTGTQLQSFNASVYDGNPELCGLPLPSKCWDEESAPGPAITKGRDDADTSEDEDQFITLGFFVTLILGFIVGFWGVCGTLLLNNSWKHCFYNFLTVTKDWLYVTAVVNIGKIQQKMRS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	850	2.2.26 [Sep-21-2011]
Q9C9H7	847	Receptor-like protein 12	no	no	0.867	0.870	0.305	1e-73
Q9FL28	1173	LRR receptor-like serine/	no	no	0.836	0.606	0.303	2e-60
Q9SHI2	1101	Leucine-rich repeat recep	no	no	0.862	0.665	0.292	8e-58
C0LGS2	1136	Probable LRR receptor-lik	no	no	0.787	0.588	0.287	5e-57
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.745	0.507	0.304	2e-55
Q9LVP0	1102	Probable leucine-rich rep	no	no	0.809	0.624	0.303	8e-55
Q9LYN8	1192	Leucine-rich repeat recep	no	no	0.758	0.541	0.298	1e-53
Q8VZG8	1045	Probable LRR receptor-lik	no	no	0.747	0.607	0.292	4e-53
O22476	1196	Protein BRASSINOSTEROID I	no	no	0.811	0.576	0.295	4e-53
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.744	0.505	0.296	4e-50

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score =  278 bits (712), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 266/872 (30%), Positives = 399/872 (45%), Gaps = 135/872 (15%)

Query: 8   LFQYRVLFSAIILLHLEPKTADSSSIRCIEEERKALLKFKQGLVDEFGFLSSW------- 60
           +F  R++    +L+H     A SS   C +++R ALL+F+     EF   +SW       
Sbjct: 10  VFSSRIIIFLSLLVH---SLASSSPHFCRDDQRDALLEFR----GEFPINASWHIMNQWR 62

Query: 61  GSEGEKKDCCNWRGVRCSNQTGHVKVLDLHGTGRVKVLDIQTRVMSGNASLRGTLNPALL 120
           G   +  DCC W GV C++++G V  LD+  T     L                 N +L 
Sbjct: 63  GPWNKSTDCCLWNGVTCNDKSGQVISLDIPNTFLNNYLKT---------------NSSLF 107

Query: 121 KLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLG 180
           KL YLRHLDL+  N  G +IP  +G+LS L  ++L+   F G IP  +GNL++L++L L 
Sbjct: 108 KLQYLRHLDLTNCNLYG-EIPSSLGNLSHLTLVNLYFNKFVGEIPASIGNLNQLRHLILA 166

Query: 181 YNKLLRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIP-SLKTL-YLEQCDLQLQ 238
            N +L       +  L  L  L+L S  L         V KIP S+  L  L    L   
Sbjct: 167 -NNVLTGEIPSSLGNLSRLVNLELFSNRL---------VGKIPDSIGDLKQLRNLSLASN 216

Query: 239 PTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNEL 298
             I    S L +  +L  L L++N L          V  +P + G +I LR ++  +N L
Sbjct: 217 NLIGEIPSSLGNLSNLVHLVLTHNQL----------VGEVPASIGNLIELRVMSFENNSL 266

Query: 299 DGEIPKFFQNMFKLEGLSLRGNSLEGVI--SEHFFSNFSYLKM------GPHFPK----- 345
            G IP  F N+ KL    L  N+           F N  Y  +      GP FPK     
Sbjct: 267 SGNIPISFANLTKLSIFVLSSNNFTSTFPFDMSIFHNLEYFDVSYNSFSGP-FPKSLLLI 325

Query: 346 ------WLQTQKHFSVLDISSAGISDSIPDWFSDTSH-------------KLADLNFSHN 386
                 +LQ  +    ++ ++   S  + D     +               L +L+ SHN
Sbjct: 326 PSLESIYLQENQFTGPIEFANTSSSTKLQDLILGRNRLHGPIPESISRLLNLEELDISHN 385

Query: 387 QMTGRFPNYISSMFILESPGIDISSNHLEGPSPS---------LPSNAF----------- 426
             TG  P  IS +  L    +D+S N+LEG  P+         L  N+F           
Sbjct: 386 NFTGAIPPTISKLVNLLH--LDLSKNNLEGEVPACLWRLNTMVLSHNSFSSFENTSQEEA 443

Query: 427 ---YIDLSKNKFSGPISFL-CSFSGQNLVYLDLSSNLLSGKLPDCWLQFN-MLRILNLAN 481
               +DL+ N F GPI ++ C  S   L +LDLS+NL SG +P C   F+  ++ LNL +
Sbjct: 444 LIEELDLNSNSFQGPIPYMICKLSS--LGFLDLSNNLFSGSIPSCIRNFSGSIKELNLGD 501

Query: 482 NNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIG 541
           NNFSG +P+      ++++L + HN   G+ P  L N   L +V +E N I    P+W+ 
Sbjct: 502 NNFSGTLPDIFSKATELVSLDVSHNQLEGKFPKSLINCKALELVNVESNKIKDIFPSWL- 560

Query: 542 ESLLNLVVLDLRSNRFYGKIPFQLCHLA--DIQILDLSLNNISGNIPKC-FNNFTAMTQE 598
           ESL +L VL+LRSN+FYG +  +   +    ++I+D+S NN SG +P   F+N+  MT  
Sbjct: 561 ESLPSLHVLNLRSNKFYGPLYHRHASIGFQSLRIIDISHNNFSGTLPPYYFSNWKDMTTL 620

Query: 599 RSYNSSAIT--FSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKL 656
                  +T  + YA      M  V+          KG +  ++      +++D S NK+
Sbjct: 621 TEEMDQYMTEFWRYADSYYHEMEMVN----------KGVDMSFERIRRDFRAIDFSGNKI 670

Query: 657 GGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVN 716
            G +PE +  L  L  LNLS N  T  I   +  L  L+ LD+SRN+ SG IP  L+ ++
Sbjct: 671 NGNIPESLGYLKELRVLNLSGNAFTSVIPRFLANLTKLETLDISRNKLSGQIPQDLAALS 730

Query: 717 RLSVMDLSHNNLSGKIPTGTQLQSFNASVYDGNPELCGLPLPSKCWDEESAPGPAITKGR 776
            LS M+ SHN L G +P GTQ Q    S +  NP L G  L   C D   A  P      
Sbjct: 731 FLSYMNFSHNLLQGPVPRGTQFQRQKCSSFLDNPGLYG--LEDICRD-TGALNPTSQLPE 787

Query: 777 DDADTSEDEDQFI--TLGFFVTLILGFIVGFW 806
           D ++  E+   ++   + +   ++ G ++G +
Sbjct: 788 DLSEAEENMFNWVAAAIAYGPGVLCGLVIGHF 819

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  234 bits (597), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 253/833 (30%), Positives = 381/833 (45%), Gaps = 122/833 (14%)

Query: 3   SKWFILFQYRVLFSAIILLHLEPKTADSSSIRCIEEERKALLKFKQGLV-DEFGFLSSWG 61
           SK F++      F  I L           + +  E E +AL  FK G+  D  G LS W 
Sbjct: 5   SKTFLILTLTFFFFGIAL-----------AKQSFEPEIEALKSFKNGISNDPLGVLSDWT 53

Query: 62  SEGEKKDCCNWRGVRCSNQTGHVKVLDLHGTGRVKVLDIQTRVMSGNASLRGTLNPALLK 121
             G  + C NW G+ C + TGHV          V +L+ Q         L G L+PA+  
Sbjct: 54  IIGSLRHC-NWTGITC-DSTGHVV--------SVSLLEKQ---------LEGVLSPAIAN 94

Query: 122 LHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGY 181
           L YL+ LDL+ N+F+G +IP  IG L++L  L L+   FSG IP  +  L  + YL L  
Sbjct: 95  LTYLQVLDLTSNSFTG-KIPAEIGKLTELNQLILYLNYFSGSIPSGIWELKNIFYLDL-R 152

Query: 182 NKLLRAGNLDWISQLFSLRYLDLSSCNLS-KSTDWLQEV--------------DKIP-SL 225
           N LL     + I +  SL  +     NL+ K  + L ++                IP S+
Sbjct: 153 NNLLSGDVPEEICKTSSLVLIGFDYNNLTGKIPECLGDLVHLQMFVAAGNHLTGSIPVSI 212

Query: 226 KTLY-LEQCDL---QLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSS---- 277
            TL  L   DL   QL   I R F +L    +L++L L+ N L   I   + N SS    
Sbjct: 213 GTLANLTDLDLSGNQLTGKIPRDFGNL---LNLQSLVLTENLLEGDIPAEIGNCSSLVQL 269

Query: 278 ----------IPDAPGPMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVIS 327
                     IP   G ++ L+ L +  N+L   IP     + +L  L L  N L G IS
Sbjct: 270 ELYDNQLTGKIPAELGNLVQLQALRIYKNKLTSSIPSSLFRLTQLTHLGLSENHLVGPIS 329

Query: 328 EH--FFSNFSYLKMGPH-----FPKWLQTQKHFSVLDISSAGISDSIPDWFSDTSHKLAD 380
           E   F  +   L +  +     FP+ +   ++ +VL +    IS  +P      ++ L +
Sbjct: 330 EEIGFLESLEVLTLHSNNFTGEFPQSITNLRNLTVLTVGFNNISGELPADLGLLTN-LRN 388

Query: 381 LNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSL--PSNAFYIDLSKNKFSGP 438
           L+   N +TG  P+ IS+   L+   +D+S N + G  P      N  +I + +N F+G 
Sbjct: 389 LSAHDNLLTGPIPSSISNCTGLKL--LDLSHNQMTGEIPRGFGRMNLTFISIGRNHFTGE 446

Query: 439 IS---FLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYL 495
           I    F CS    NL  L ++ N L+G L     +   LRIL ++ N+ +G IP   G L
Sbjct: 447 IPDDIFNCS----NLETLSVADNNLTGTLKPLIGKLQKLRILQVSYNSLTGPIPREIGNL 502

Query: 496 QKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSN 555
           + +  L LH N F+G +P  + N T L+ + +  N + G IP  + +  L L VLDL +N
Sbjct: 503 KDLNILYLHSNGFTGRIPREMSNLTLLQGLRMYSNDLEGPIPEEMFDMKL-LSVLDLSNN 561

Query: 556 RFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAM-TQERSYNSSAITFSYAVPS 614
           +F G+IP     L  +  L L  N  +G+IP    + + + T + S N    T    + +
Sbjct: 562 KFSGQIPALFSKLESLTYLSLQGNKFNGSIPASLKSLSLLNTFDISDNLLTGTIPGELLA 621

Query: 615 RTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSN-------------------- 654
               + +++ F   LLT  G+  +    L +V+ +DLS+N                    
Sbjct: 622 SLKNMQLYLNFSNNLLT--GTIPKELGKLEMVQEIDLSNNLFSGSIPRSLQACKNVFTLD 679

Query: 655 ----KLGGEVPEEI---MDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGG 707
                L G +P+E+   MD++  I LNLSRN+ +G I    G +  L  LDLS N  +G 
Sbjct: 680 FSQNNLSGHIPDEVFQGMDMI--ISLNLSRNSFSGEIPQSFGNMTHLVSLDLSSNNLTGE 737

Query: 708 IPSSLSQVNRLSVMDLSHNNLSGKIPTGTQLQSFNASVYDGNPELCGLPLPSK 760
           IP SL+ ++ L  + L+ NNL G +P     ++ NAS   GN +LCG   P K
Sbjct: 738 IPESLANLSTLKHLKLASNNLKGHVPESGVFKNINASDLMGNTDLCGSKKPLK 790

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SHI2|Y1723_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS=Arabidopsis thaliana GN=At1g17230 PE=2 SV=2

 Score =  226 bits (575), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 241/823 (29%), Positives = 376/823 (45%), Gaps = 90/823 (10%)

Query: 12  RVLFSAIILLHLEPKTADSSSIRCIEEERKALLKFKQGLVDEFGFLSSWGSEGEKKDCCN 71
           R+ F AI++L     +     +R + EE + LL+FK  L D  G+L+SW       + CN
Sbjct: 4   RICFLAIVILC----SFSFILVRSLNEEGRVLLEFKAFLNDSNGYLASWNQL--DSNPCN 57

Query: 72  WRGVRCSNQTGHVKVLDLHGTGRVKVLDIQTRVMSGNASLRGTLNPALLKLHYLRHLDLS 131
           W G+ C++    V  +DL+G                  +L GTL+P + KLH LR L++S
Sbjct: 58  WTGIACTHLR-TVTSVDLNGM-----------------NLSGTLSPLICKLHGLRKLNVS 99

Query: 132 FNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAGNL- 190
            N  SG  IP  +     LE LDL    F G IP  L  +  L+ L L  N L   G++ 
Sbjct: 100 TNFISGP-IPQDLSLCRSLEVLDLCTNRFHGVIPIQLTMIITLKKLYLCENYLF--GSIP 156

Query: 191 DWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFS---- 246
             I  L SL+ L + S NL+            PS+  L      L++       FS    
Sbjct: 157 RQIGNLSSLQELVIYSNNLTGVIP--------PSMAKLR----QLRIIRAGRNGFSGVIP 204

Query: 247 -HLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIPKF 305
             ++   SL+ LGL+ N L  S+   L  + ++ D          L L  N L GEIP  
Sbjct: 205 SEISGCESLKVLGLAENLLEGSLPKQLEKLQNLTD----------LILWQNRLSGEIPPS 254

Query: 306 FQNMFKLEGLSLRGNSLEGVISEHF--FSNFSYL-----KMGPHFPKWLQTQKHFSVLDI 358
             N+ +LE L+L  N   G I       +    L     ++    P+ +      + +D 
Sbjct: 255 VGNISRLEVLALHENYFTGSIPREIGKLTKMKRLYLYTNQLTGEIPREIGNLIDAAEIDF 314

Query: 359 SSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPS 418
           S   ++  IP  F    + L  L+   N + G  P  +  + +LE   +D+S N L G  
Sbjct: 315 SENQLTGFIPKEFGHILN-LKLLHLFENILLGPIPRELGELTLLEK--LDLSINRLNGTI 371

Query: 419 P-SLPSNAFYIDLS--KNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLR 475
           P  L    + +DL    N+  G I  L  F   N   LD+S+N LSG +P  + +F  L 
Sbjct: 372 PQELQFLPYLVDLQLFDNQLEGKIPPLIGFY-SNFSVLDMSANSLSGPIPAHFCRFQTLI 430

Query: 476 ILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGN 535
           +L+L +N  SG IP      + +  L L  N  +G LP  L N  +L  + L +N +SGN
Sbjct: 431 LLSLGSNKLSGNIPRDLKTCKSLTKLMLGDNQLTGSLPIELFNLQNLTALELHQNWLSGN 490

Query: 536 IPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAM 595
           I A +G+ L NL  L L +N F G+IP ++ +L  I   ++S N ++G+IPK     + +
Sbjct: 491 ISADLGK-LKNLERLRLANNNFTGEIPPEIGNLTKIVGFNISSNQLTGHIPKELG--SCV 547

Query: 596 TQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLG---LVKSVDLS 652
           T +R  + S   FS  +      L   ++ +I+ L+      E  ++ G    +  + L 
Sbjct: 548 TIQR-LDLSGNKFSGYIAQELGQL---VYLEILRLSDNRLTGEIPHSFGDLTRLMELQLG 603

Query: 653 SNKLGGEVPEEIMDLVGL-IGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSS 711
            N L   +P E+  L  L I LN+S NNL+G I   +G LQ L+ L L+ N+ SG IP+S
Sbjct: 604 GNLLSENIPVELGKLTSLQISLNISHNNLSGTIPDSLGNLQMLEILYLNDNKLSGEIPAS 663

Query: 712 LSQVNRLSVMDLSHNNLSGKIPTGTQLQSFNASVYDGNPELCGLPLPSKCWDEESAPGPA 771
           +  +  L + ++S+NNL G +P     Q  ++S + GN  LC          + S   P 
Sbjct: 664 IGNLMSLLICNISNNNLVGTVPDTAVFQRMDSSNFAGNHGLCN--------SQRSHCQPL 715

Query: 772 ITKGRDDADTSEDEDQFITLGFFVTLILG--FIVGFWGVCGTL 812
           +       +   +  Q   +     +++G  F++ F G+C T+
Sbjct: 716 VPHSDSKLNWLINGSQRQKILTITCIVIGSVFLITFLGLCWTI 758

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGS2|Y4361_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g36180 OS=Arabidopsis thaliana GN=At4g36180 PE=1 SV=1

 Score =  223 bits (568), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 229/796 (28%), Positives = 363/796 (45%), Gaps = 127/796 (15%)

Query: 37  EEERKALLKFKQGLVDEFGFLSSWGSEGEKKDCCNWRGVRCSNQTGHVKVLDLHGTGRVK 96
           + E  AL  FK  L D  G L+SW         C+WRGV C+N          H    ++
Sbjct: 26  QAEIDALTAFKLNLHDPLGALTSW-DPSTPAAPCDWRGVGCTN----------HRVTEIR 74

Query: 97  VLDIQTRVMSGNASLRGTLNPALLKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLF 156
           +  +Q         L G ++  +  L  LR L L  N+F+G+ IP  +   ++L  + L 
Sbjct: 75  LPRLQ---------LSGRISDRISGLRMLRKLSLRSNSFNGT-IPTSLAYCTRLLSVFLQ 124

Query: 157 AASFSGPIPPLLGNLSRLQYLSLGYNKLLRAGNLDWISQLFSLRYLDLSSCNLSKSTDWL 216
             S SG +PP + NL+ L+  ++  N+L  +G +  +    SL++LD+SS   S      
Sbjct: 125 YNSLSGKLPPAMRNLTSLEVFNVAGNRL--SGEIP-VGLPSSLQFLDISSNTFS------ 175

Query: 217 QEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWL-FNV 275
               +IPS         +L     ++ S++ L        +  S  NL +  Y WL FN+
Sbjct: 176 ---GQIPS------GLANLTQLQLLNLSYNQLTGE-----IPASLGNLQSLQYLWLDFNL 221

Query: 276 --SSIPDAPGPMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSN 333
              ++P A     SL  L+ S+NE+ G IP  +  + KLE LSL  N+  G +    F N
Sbjct: 222 LQGTLPSAISNCSSLVHLSASENEIGGVIPAAYGALPKLEVLSLSNNNFSGTVPFSLFCN 281

Query: 334 FSYLKMGPHFPKWLQTQKHFSVLDISSAGISDSI-PDWFSDTSHKLADLNFSHNQMTGRF 392
            S                  +++ +     SD + P+  ++    L  L+   N+++GRF
Sbjct: 282 TS-----------------LTIVQLGFNAFSDIVRPETTANCRTGLQVLDLQENRISGRF 324

Query: 393 PNYISSMFILESPGIDISSNHLEGPSPSLPSNAFYID---LSKNKFSGPISFLCSFSGQN 449
           P +++++  L++  +D+S N   G  P    N   ++   L+ N  +G I       G +
Sbjct: 325 PLWLTNILSLKN--LDVSGNLFSGEIPPDIGNLKRLEELKLANNSLTGEIPVEIKQCG-S 381

Query: 450 LVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNN-- 507
           L  LD   N L G++P+       L++L+L  N+FSG +P+S   LQ++  L+L  NN  
Sbjct: 382 LDVLDFEGNSLKGQIPEFLGYMKALKVLSLGRNSFSGYVPSSMVNLQQLERLNLGENNLN 441

Query: 508 ----------------------FSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLL 545
                                 FSG +P  + N ++L  + L  N  SG IPA +G +L 
Sbjct: 442 GSFPVELMALTSLSELDLSGNRFSGAVPVSISNLSNLSFLNLSGNGFSGEIPASVG-NLF 500

Query: 546 NLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSA 605
            L  LDL      G++P +L  L ++Q++ L  NN SG +P+ F++  ++   R  N S+
Sbjct: 501 KLTALDLSKQNMSGEVPVELSGLPNVQVIALQGNNFSGVVPEGFSSLVSL---RYVNLSS 557

Query: 606 ITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIM 665
            +FS  +P     L + +   +      GS          ++ ++L SN+L G +P ++ 
Sbjct: 558 NSFSGEIPQTFGFLRLLVSLSLSDNHISGSIPPEIGNCSALEVLELRSNRLMGHIPADLS 617

Query: 666 DLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSH 725
            L  L  L+L +NNL+G I P+I Q  SL+ L L  N  SG IP S S ++ L+ MDLS 
Sbjct: 618 RLPRLKVLDLGQNNLSGEIPPEISQSSSLNSLSLDHNHLSGVIPGSFSGLSNLTKMDLSV 677

Query: 726 NNLSGKIPTGTQLQSF-------------------------NASVYDGNPELCGLPLPSK 760
           NNL+G+IP    L S                          N S + GN ELCG PL  +
Sbjct: 678 NNLTGEIPASLALISSNLVYFNVSSNNLKGEIPASLGSRINNTSEFSGNTELCGKPLNRR 737

Query: 761 CWDEESAPGPAITKGR 776
           C   ES+      K R
Sbjct: 738 C---ESSTAEGKKKKR 750

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  218 bits (554), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 215/706 (30%), Positives = 333/706 (47%), Gaps = 72/706 (10%)

Query: 36  IEEERKALLKFKQGLV---DEFGFLSSWGSEGEKKDCCNWRGVRCSNQTGHVKVLDLHGT 92
           I  + + LL+ K+ LV    E   L  W S+    + C+W GV C N TG  +V+ L+ T
Sbjct: 23  INNDLQTLLEVKKSLVTNPQEDDPLRQWNSD--NINYCSWTGVTCDN-TGLFRVIALNLT 79

Query: 93  GRVKVLDIQTRVMSGNASLRGTLNPALLKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEY 152
           G                 L G+++P   +   L HLDLS NN  G  IP  + +L+ LE 
Sbjct: 80  G---------------LGLTGSISPWFGRFDNLIHLDLSSNNLVGP-IPTALSNLTSLES 123

Query: 153 LDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAGNL-DWISQLFSLRYLDLSSCNLSK 211
           L LF+   +G IP  LG+L  ++ L +G N+L+  G++ + +  L +L+ L L+SC L+ 
Sbjct: 124 LFLFSNQLTGEIPSQLGSLVNIRSLRIGDNELV--GDIPETLGNLVNLQMLALASCRLTG 181

Query: 212 STDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPW 271
                 ++ ++  +++L L+  D  L+  I    + L +   L     + N L       
Sbjct: 182 PIP--SQLGRLVRVQSLILQ--DNYLEGPIP---AELGNCSDLTVFTAAENMLNG----- 229

Query: 272 LFNVSSIPDAPGPMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFF 331
                +IP   G + +L  L L++N L GEIP     M +L+ LSL  N L+G+I     
Sbjct: 230 -----TIPAELGRLENLEILNLANNSLTGEIPSQLGEMSQLQYLSLMANQLQGLI----- 279

Query: 332 SNFSYLKMGPHFPKWLQTQKHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGR 391
                       PK L    +   LD+S+  ++  IP+ F + S +L DL  ++N ++G 
Sbjct: 280 ------------PKSLADLGNLQTLDLSANNLTGEIPEEFWNMS-QLLDLVLANNHLSGS 326

Query: 392 FPNYISSMFI-LESPGIDISSNHLEGPSP---SLPSNAFYIDLSKNKFSGPISFLCSFSG 447
            P  I S    LE   + +S   L G  P   S   +   +DLS N  +G I     F  
Sbjct: 327 LPKSICSNNTNLEQ--LVLSGTQLSGEIPVELSKCQSLKQLDLSNNSLAGSIPEAL-FEL 383

Query: 448 QNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNN 507
             L  L L +N L G L         L+ L L +NN  GK+P     L+K+  L L+ N 
Sbjct: 384 VELTDLYLHNNTLEGTLSPSISNLTNLQWLVLYHNNLEGKLPKEISALRKLEVLFLYENR 443

Query: 508 FSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCH 567
           FSGE+P  + N T L+++ +  N   G IP  IG  L  L +L LR N   G +P  L +
Sbjct: 444 FSGEIPQEIGNCTSLKMIDMFGNHFEGEIPPSIGR-LKELNLLHLRQNELVGGLPASLGN 502

Query: 568 LADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDI 627
              + ILDL+ N +SG+IP  F     + Q   YN+S       +P     L      ++
Sbjct: 503 CHQLNILDLADNQLSGSIPSSFGFLKGLEQLMLYNNS---LQGNLPDSLISLRNLTRINL 559

Query: 628 VLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPK 687
                 G+ +    +   + S D+++N    E+P E+ +   L  L L +N LTG I   
Sbjct: 560 SHNRLNGTIHPLCGSSSYL-SFDVTNNGFEDEIPLELGNSQNLDRLRLGKNQLTGKIPWT 618

Query: 688 IGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGKIP 733
           +G+++ L  LD+S N  +G IP  L    +L+ +DL++N LSG IP
Sbjct: 619 LGKIRELSLLDMSSNALTGTIPLQLVLCKKLTHIDLNNNFLSGPIP 664

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LVP0|Y5639_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana GN=At5g63930 PE=1 SV=1

 Score =  216 bits (549), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 227/748 (30%), Positives = 331/748 (44%), Gaps = 60/748 (8%)

Query: 39  ERKALLKFKQGLVDEFGFLSSWGSEGEKKDCCNWRGVRCSNQTGHVKVLDLHGTGRVKVL 98
           E + LL+ K   VD    L +W S       C W GV CSN +   +VL L+ +  V   
Sbjct: 30  EGQYLLEIKSKFVDAKQNLRNWNSNDSVP--CGWTGVMCSNYSSDPEVLSLNLSSMV--- 84

Query: 99  DIQTRVMSGNASLRGTLNPALLKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAA 158
                       L G L+P++  L +L+ LDLS+N  SG +IP  IG+ S LE L L   
Sbjct: 85  ------------LSGKLSPSIGGLVHLKQLDLSYNGLSG-KIPKEIGNCSSLEILKLNNN 131

Query: 159 SFSGPIPPLLGNLSRLQYLSLGYNKLLRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQE 218
            F G IP  +G L  L+ L + YN  +       I  L SL  L   S N+S      Q 
Sbjct: 132 QFDGEIPVEIGKLVSLENLII-YNNRISGSLPVEIGNLLSLSQLVTYSNNISG-----QL 185

Query: 219 VDKIPSLKTLYLEQCDLQLQPTIHRSF-SHLNSSPSLETLGLSYNNLTASIYPWLFNVSS 277
              I +LK L   +     Q  I  S  S +    SL  LGL+ N L+  +         
Sbjct: 186 PRSIGNLKRLTSFRAG---QNMISGSLPSEIGGCESLVMLGLAQNQLSGEL--------- 233

Query: 278 IPDAPGPMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFS----N 333
            P   G +  L  + L +NE  G IP+   N   LE L+L  N L G I +         
Sbjct: 234 -PKEIGMLKKLSQVILWENEFSGFIPREISNCTSLETLALYKNQLVGPIPKELGDLQSLE 292

Query: 334 FSYL---KMGPHFPKWLQTQKHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTG 390
           F YL    +    P+ +    +   +D S   ++  IP    +    L  L    NQ+TG
Sbjct: 293 FLYLYRNGLNGTIPREIGNLSYAIEIDFSENALTGEIPLELGNI-EGLELLYLFENQLTG 351

Query: 391 RFPNYISSMFILESPGIDISSNHLEGPSP---SLPSNAFYIDLSKNKFSGPISFLCSFSG 447
             P  +S++  L    +D+S N L GP P         F + L +N  SG I     +  
Sbjct: 352 TIPVELSTLKNLSK--LDLSINALTGPIPLGFQYLRGLFMLQLFQNSLSGTIPPKLGWY- 408

Query: 448 QNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNN 507
            +L  LD+S N LSG++P      + + ILNL  NN SG IP      + ++ L L  NN
Sbjct: 409 SDLWVLDMSDNHLSGRIPSYLCLHSNMIILNLGTNNLSGNIPTGITTCKTLVQLRLARNN 468

Query: 508 FSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCH 567
             G  PS L    ++  + L +N   G+IP  +G +   L  L L  N F G++P ++  
Sbjct: 469 LVGRFPSNLCKQVNVTAIELGQNRFRGSIPREVG-NCSALQRLQLADNGFTGELPREIGM 527

Query: 568 LADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDI 627
           L+ +  L++S N ++G +P    N   + +    +     FS  +PS    L       +
Sbjct: 528 LSQLGTLNISSNKLTGEVPSEIFNCKMLQR---LDMCCNNFSGTLPSEVGSLYQLELLKL 584

Query: 628 VLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGL-IGLNLSRNNLTGYITP 686
                 G+       L  +  + +  N   G +P E+  L GL I LNLS N LTG I P
Sbjct: 585 SNNNLSGTIPVALGNLSRLTELQMGGNLFNGSIPRELGSLTGLQIALNLSYNKLTGEIPP 644

Query: 687 KIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGKIPTGTQLQSFNASVY 746
           ++  L  L+FL L+ N  SG IPSS + ++ L   + S+N+L+G IP    L++ + S +
Sbjct: 645 ELSNLVMLEFLLLNNNNLSGEIPSSFANLSSLLGYNFSYNSLTGPIPL---LRNISMSSF 701

Query: 747 DGNPELCGLPLPSKCWDEESAPGPAITK 774
            GN  LCG PL      +  AP  +  K
Sbjct: 702 IGNEGLCGPPLNQCIQTQPFAPSQSTGK 729

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LYN8|EXS_ARATH Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1

 Score =  211 bits (538), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 217/726 (29%), Positives = 325/726 (44%), Gaps = 81/726 (11%)

Query: 100 IQTRVMSGNASLRGTLNPALLKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAAS 159
           +QT  +SGN SL G L   L +L  L +LDLS N+FSGS  P F  SL  L  LD+   S
Sbjct: 115 LQTLDLSGN-SLTGLLPRLLSELPQLLYLDLSDNHFSGSLPPSFFISLPALSSLDVSNNS 173

Query: 160 FSGPIPPLLGNLSRLQYLSLGYNKLLRAGNL-DWISQLFSLRYLDLSSCNLSKSTDWLQE 218
            SG IPP +G LS L  L +G N    +G +   I  +  L+     SC  +      +E
Sbjct: 174 LSGEIPPEIGKLSNLSNLYMGLNSF--SGQIPSEIGNISLLKNFAAPSCFFNGPLP--KE 229

Query: 219 VDKIPSLKTLYLEQCDLQLQP---TIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNV 275
           + K+      +L + DL   P   +I +SF  L++   L  L L    L   I P L N 
Sbjct: 230 ISKLK-----HLAKLDLSYNPLKCSIPKSFGELHN---LSILNLVSAELIGLIPPELGNC 281

Query: 276 SSIPD---------APGPM----ISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSL 322
            S+            P P+    I L T +   N+L G +P +      L+ L L  N  
Sbjct: 282 KSLKSLMLSFNSLSGPLPLELSEIPLLTFSAERNQLSGSLPSWMGKWKVLDSLLLANNRF 341

Query: 323 EGVISEHFFSNFSYLK--------MGPHFPKWLQTQKHFSVLDISSAGISDSIPDWFSDT 374
            G I  H   +   LK        +    P+ L        +D+S   +S +I + F D 
Sbjct: 342 SGEIP-HEIEDCPMLKHLSLASNLLSGSIPRELCGSGSLEAIDLSGNLLSGTIEEVF-DG 399

Query: 375 SHKLADLNFSHNQMTGRFPNYI-----------SSMFILESPG----------IDISSNH 413
              L +L  ++NQ+ G  P  +           S+ F  E P              S N 
Sbjct: 400 CSSLGELLLTNNQINGSIPEDLWKLPLMALDLDSNNFTGEIPKSLWKSTNLMEFTASYNR 459

Query: 414 LEGPSPSLPSNAFYID---LSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQ 470
           LEG  P+   NA  +    LS N+ +G I         +L  L+L++N+  GK+P     
Sbjct: 460 LEGYLPAEIGNAASLKRLVLSDNQLTGEIPREIG-KLTSLSVLNLNANMFQGKIPVELGD 518

Query: 471 FNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSL------------LKN 518
              L  L+L +NN  G+IP+    L ++  L L +NN SG +PS             L  
Sbjct: 519 CTSLTTLDLGSNNLQGQIPDKITALAQLQCLVLSYNNLSGSIPSKPSAYFHQIEMPDLSF 578

Query: 519 FTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSL 578
             H  +  L  N +SG IP  +GE L+ LV + L +N   G+IP  L  L ++ ILDLS 
Sbjct: 579 LQHHGIFDLSYNRLSGPIPEELGECLV-LVEISLSNNHLSGEIPASLSRLTNLTILDLSG 637

Query: 579 NNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYE 638
           N ++G+IPK   N   +   +  N +    +  +P    +L   +  ++      G    
Sbjct: 638 NALTGSIPKEMGNSLKL---QGLNLANNQLNGHIPESFGLLGSLVKLNLTKNKLDGPVPA 694

Query: 639 YKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLD 698
               L  +  +DLS N L GE+  E+  +  L+GL + +N  TG I  ++G L  L++LD
Sbjct: 695 SLGNLKELTHMDLSFNNLSGELSSELSTMEKLVGLYIEQNKFTGEIPSELGNLTQLEYLD 754

Query: 699 LSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGKIPTGTQLQSFNASVYDGNPELCGLPLP 758
           +S N  SG IP+ +  +  L  ++L+ NNL G++P+    Q  + ++  GN ELCG  + 
Sbjct: 755 VSENLLSGEIPTKICGLPNLEFLNLAKNNLRGEVPSDGVCQDPSKALLSGNKELCGRVVG 814

Query: 759 SKCWDE 764
           S C  E
Sbjct: 815 SDCKIE 820

Receptor with a serine/threonine-protein kinase activity required for the specification of the correct number of male archesporial initials and for the subsequent specification of tapetal and middle cell layer identities. In seeds, required for enhancing cell size and the rate of embryonic development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8VZG8|Y4885_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=1 SV=3

 Score =  210 bits (535), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 215/734 (29%), Positives = 319/734 (43%), Gaps = 99/734 (13%)

Query: 30  SSSIRCIEEERKALLKFKQGLVDEFGF--LSSWGSEGEKKDCCNWRGVRCSNQTGHVKVL 87
           S ++    EE  ALLK+K    ++     LSSW +      C +W GV CS   G +  L
Sbjct: 41  SFAVSATVEEANALLKWKSTFTNQTSSSKLSSWVNPNTSSFCTSWYGVACS--LGSIIRL 98

Query: 88  DLHGTGRVKVLDIQTRVMSGNASLRGTLNP-ALLKLHYLRHLDLSFNNFSGSQIPMFIGS 146
           +L  TG                 + GT        L  L  +DLS N FSG+  P++ G 
Sbjct: 99  NLTNTG-----------------IEGTFEDFPFSSLPNLTFVDLSMNRFSGTISPLW-GR 140

Query: 147 LSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKL-----LRAGNLDWISQLFSLRY 201
            SKLEY DL      G IPP LG+LS L  L L  NKL        G L  ++++    Y
Sbjct: 141 FSKLEYFDLSINQLVGEIPPELGDLSNLDTLHLVENKLNGSIPSEIGRLTKVTEI--AIY 198

Query: 202 LDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSY 261
            +L +  +  S   L +      L  LYL      L  +I     +L   P+L  L L  
Sbjct: 199 DNLLTGPIPSSFGNLTK------LVNLYLFIN--SLSGSIPSEIGNL---PNLRELCLDR 247

Query: 262 NNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNS 321
           NNLT  I          P + G + ++  L + +N+L GEIP    NM  L+ LSL  N 
Sbjct: 248 NNLTGKI----------PSSFGNLKNVTLLNMFENQLSGEIPPEIGNMTALDTLSLHTNK 297

Query: 322 LEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAGISDSIPDWFSDTSHKLADL 381
           L G I                 P  L   K  +VL +    ++ SIP    +    + DL
Sbjct: 298 LTGPI-----------------PSTLGNIKTLAVLHLYLNQLNGSIPPELGEM-ESMIDL 339

Query: 382 NFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSLPSNAFYIDLSKNKFSGPISF 441
             S N++TG  P+    +  LE                       ++ L  N+ SGPI  
Sbjct: 340 EISENKLTGPVPDSFGKLTALE-----------------------WLFLRDNQLSGPIPP 376

Query: 442 LCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTL 501
             + S + L  L L +N  +G LPD   +   L  L L +N+F G +P S    + ++ +
Sbjct: 377 GIANSTE-LTVLQLDTNNFTGFLPDTICRGGKLENLTLDDNHFEGPVPKSLRDCKSLIRV 435

Query: 502 SLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPA-WIGESLLNLVVLDLRSNRFYGK 560
               N+FSG++      +  L  + L  N+  G + A W  E    LV   L +N   G 
Sbjct: 436 RFKGNSFSGDISEAFGVYPTLNFIDLSNNNFHGQLSANW--EQSQKLVAFILSNNSITGA 493

Query: 561 IPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLP 620
           IP ++ ++  +  LDLS N I+G +P+  +N   +++      +    S  +PS   +L 
Sbjct: 494 IPPEIWNMTQLSQLDLSSNRITGELPESISNINRISK---LQLNGNRLSGKIPSGIRLLT 550

Query: 621 VHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNL 680
              + D+    +        N L  +  ++LS N L   +PE +  L  L  L+LS N L
Sbjct: 551 NLEYLDLSSNRFSSEIPPTLNNLPRLYYMNLSRNDLDQTIPEGLTKLSQLQMLDLSYNQL 610

Query: 681 TGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGKIPTGTQLQS 740
            G I+ +   LQ+L+ LDLS N  SG IP S   +  L+ +D+SHNNL G IP     ++
Sbjct: 611 DGEISSQFRSLQNLERLDLSHNNLSGQIPPSFKDMLALTHVDVSHNNLQGPIPDNAAFRN 670

Query: 741 FNASVYDGNPELCG 754
                ++GN +LCG
Sbjct: 671 APPDAFEGNKDLCG 684

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O22476|BRI1_ARATH Protein BRASSINOSTEROID INSENSITIVE 1 OS=Arabidopsis thaliana GN=BRI1 PE=1 SV=1

 Score =  210 bits (534), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 238/806 (29%), Positives = 355/806 (44%), Gaps = 116/806 (14%)

Query: 30  SSSIRCIEEERKALLKFKQGLVDEFGFLSSWGSEGEKKDCCNWRGVRCSNQTGHVKVLDL 89
           +S  + +  E   L+ FK  L D+   L  W S    K+ C + GV C +    V  +DL
Sbjct: 26  ASPSQSLYREIHQLISFKDVLPDK-NLLPDWSS---NKNPCTFDGVTCRDD--KVTSIDL 79

Query: 90  HGTGRVKVLDIQTRVMSGNASLRGTLNPALLKLHYLRHLDLSFNNFSGSQIPMFIGSLSK 149
                 K L++    +S +      L    L      H++ S + F  S         + 
Sbjct: 80  SS----KPLNVGFSAVSSSLLSLTGLESLFLSN---SHINGSVSGFKCS---------AS 123

Query: 150 LEYLDLFAASFSGPIPPL--LGNLSRLQYLSLGYNKLLRAGNLDWISQLFSLRYLDLSSC 207
           L  LDL   S SGP+  L  LG+ S L++L++  N L   G +    +L SL  LDLS+ 
Sbjct: 124 LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSAN 183

Query: 208 NLSKS--TDWLQEVDKIPSLKTLYLE----QCDLQLQPTIHRSFSHLNSS---------- 251
           ++S +    W+   D    LK L +       D+ +   ++  F  ++S+          
Sbjct: 184 SISGANVVGWVLS-DGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLG 242

Query: 252 --PSLETLGLSYNNLTASIYPW--------LFNVSS----IPDAPGPMISLRTLTLSDNE 297
              +L+ L +S N L+              L N+SS     P  P P+ SL+ L+L++N+
Sbjct: 243 DCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENK 302

Query: 298 LDGEIPKFFQNMFK-LEGLSLRGNSLEGVISEHF------------FSNFSYLKMGPHFP 344
             GEIP F       L GL L GN   G +   F             +NFS    G    
Sbjct: 303 FTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFS----GELPM 358

Query: 345 KWLQTQKHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILES 404
             L   +   VLD+S    S  +P+  ++ S  L  L+ S N  +G              
Sbjct: 359 DTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSG-------------- 404

Query: 405 PGIDISSNHLEGPSPSLPSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKL 464
               I  N  + P  +L      + L  N F+G I    S   + LV L LS N LSG +
Sbjct: 405 ---PILPNLCQNPKNTLQE----LYLQNNGFTGKIPPTLSNCSE-LVSLHLSFNYLSGTI 456

Query: 465 PDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRV 524
           P      + LR L L  N   G+IP    Y++ + TL L  N+ +GE+PS L N T+L  
Sbjct: 457 PSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNW 516

Query: 525 VALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGN 584
           ++L  N ++G IP WIG  L NL +L L +N F G IP +L     +  LDL+ N  +G 
Sbjct: 517 ISLSNNRLTGEIPKWIGR-LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGT 575

Query: 585 IP--------KCFNNFTA-----------MTQERSYNSSAITFSYAVPSRTTMLPVHIFF 625
           IP        K   NF A           M +E     + + F      +   L      
Sbjct: 576 IPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPC 635

Query: 626 DIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYIT 685
           +I    + G      +  G +  +D+S N L G +P+EI  +  L  LNL  N+++G I 
Sbjct: 636 NITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP 695

Query: 686 PKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGKIPTGTQLQSFNASV 745
            ++G L+ L+ LDLS N+  G IP ++S +  L+ +DLS+NNLSG IP   Q ++F  + 
Sbjct: 696 DEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAK 755

Query: 746 YDGNPELCGLPLPSKCWDEESAPGPA 771
           +  NP LCG PLP +C D  +A G A
Sbjct: 756 FLNNPGLCGYPLP-RC-DPSNADGYA 779

Receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development, including expression of light- and stress-regulated genes, promotion of cell elongation, normal leaf and chloroplast senescence, and flowering. Binds brassinolide, and less effectively castasterone, but not 2,3,22,23-O-tetramethylbrassinolide or ecdysone. May be involved in a feedback regulation of brassinosteroid biosynthesis. Phosphorylates BRI1-associated receptor kinase 1 (BAK1), Transthyretin-Like protein (TTL) and SERK1 on 'Ser-299' and 'Thr-462' in vitro. May have a guanylyl cyclase activity.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  200 bits (508), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 209/705 (29%), Positives = 317/705 (44%), Gaps = 72/705 (10%)

Query: 37  EEERKALLKFKQGLV---DEFGFLSSWGSEGEKKDCCNWRGVRCSNQTGHVKVLDLHGTG 93
            ++ + LL+ K   +    E   L  W S       CNW GV C  +   +  L+L G G
Sbjct: 27  RDDLQTLLELKNSFITNPKEEDVLRDWNSG--SPSYCNWTGVTCGGR--EIIGLNLSGLG 82

Query: 94  RVKVLDIQTRVMSGNASLRGTLNPALLKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYL 153
                            L G+++P++ + + L H+DLS N   G          S LE L
Sbjct: 83  -----------------LTGSISPSIGRFNNLIHIDLSSNRLVGPIPTTLSNLSSSLESL 125

Query: 154 DLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAGNL-DWISQLFSLRYLDLSSCNLSKS 212
            LF+   SG IP  LG+L  L+ L LG N+L   G + +    L +L+ L L+SC L+  
Sbjct: 126 HLFSNLLSGDIPSQLGSLVNLKSLKLGDNEL--NGTIPETFGNLVNLQMLALASCRLTGL 183

Query: 213 TDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWL 272
                   ++  L+TL L+  D +L+  I    + + +  SL     ++N L        
Sbjct: 184 IP--SRFGRLVQLQTLILQ--DNELEGPIP---AEIGNCTSLALFAAAFNRLNG------ 230

Query: 273 FNVSSIPDAPGPMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFS 332
               S+P     + +L+TL L DN   GEIP    ++  ++ L+L GN L+G+I      
Sbjct: 231 ----SLPAELNRLKNLQTLNLGDNSFSGEIPSQLGDLVSIQYLNLIGNQLQGLI------ 280

Query: 333 NFSYLKMGPHFPKWLQTQKHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRF 392
                      PK L    +   LD+SS  ++  I + F    ++L  L  + N+++G  
Sbjct: 281 -----------PKRLTELANLQTLDLSSNNLTGVIHEEFWRM-NQLEFLVLAKNRLSGSL 328

Query: 393 PNYISSMFILESPGIDISSNHLEGPSPSLPSNA---FYIDLSKNKFSGPISFLCSFSGQN 449
           P  I S        + +S   L G  P+  SN      +DLS N  +G I     F    
Sbjct: 329 PKTICSNNT-SLKQLFLSETQLSGEIPAEISNCQSLKLLDLSNNTLTGQIPD-SLFQLVE 386

Query: 450 LVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFS 509
           L  L L++N L G L         L+   L +NN  GK+P   G+L K+  + L+ N FS
Sbjct: 387 LTNLYLNNNSLEGTLSSSISNLTNLQEFTLYHNNLEGKVPKEIGFLGKLEIMYLYENRFS 446

Query: 510 GELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLA 569
           GE+P  + N T L+ +    N +SG IP+ IG  L +L  L LR N   G IP  L +  
Sbjct: 447 GEMPVEIGNCTRLQEIDWYGNRLSGEIPSSIGR-LKDLTRLHLRENELVGNIPASLGNCH 505

Query: 570 DIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVL 629
            + ++DL+ N +SG+IP  F   TA+     YN+S       +P     L      +   
Sbjct: 506 QMTVIDLADNQLSGSIPSSFGFLTALELFMIYNNS---LQGNLPDSLINLKNLTRINFSS 562

Query: 630 LTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIG 689
             + GS      +   + S D++ N   G++P E+     L  L L +N  TG I    G
Sbjct: 563 NKFNGSISPLCGSSSYL-SFDVTENGFEGDIPLELGKSTNLDRLRLGKNQFTGRIPRTFG 621

Query: 690 QLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGKIPT 734
           ++  L  LD+SRN  SG IP  L    +L+ +DL++N LSG IPT
Sbjct: 622 KISELSLLDISRNSLSGIIPVELGLCKKLTHIDLNNNYLSGVIPT 666

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	850
359489995	867	PREDICTED: probable LRR receptor-like se	0.9	0.882	0.454	0.0
224115848	884	predicted protein [Populus trichocarpa]	0.918	0.883	0.423	1e-179
147811986	1085	hypothetical protein VITISV_012666 [Viti	0.904	0.708	0.456	1e-174
147834202	1270	hypothetical protein VITISV_011552 [Viti	0.882	0.590	0.426	1e-161
359477923	1022	PREDICTED: receptor-like protein 12-like	0.923	0.768	0.408	1e-157
224105895	963	predicted protein [Populus trichocarpa]	0.957	0.845	0.387	1e-156
225464712	1021	PREDICTED: receptor-like protein 12-like	0.803	0.668	0.461	1e-155
225466147	1024	PREDICTED: LRR receptor-like serine/thre	0.86	0.713	0.442	1e-155
359490576	972	PREDICTED: LRR receptor-like serine/thre	0.814	0.711	0.452	1e-154
225470187	870	PREDICTED: receptor-like protein kinase	0.907	0.886	0.379	1e-154

>gi|359489995|ref|XP_003634011.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180-like [Vitis vinifera]

 Score =  677 bits (1746), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 410/903 (45%), Positives = 542/903 (60%), Gaps = 138/903 (15%)

Query: 13  VLFSAIILLHLEPKTADSSSIRCIEEERKALLKFKQGLVDEFGFLSSWGSEGEKKDCCNW 72
           +LFS ++L+ +  K    +++ C+E ER+ALL+FK GLVD++G LSSW    + +DCC W
Sbjct: 11  LLFSFLVLVVVCAKAGLGTTVGCVERERQALLRFKHGLVDDYGILSSW----DTRDCCQW 66

Query: 73  RGVRCSNQTGHVKVLDLHGTGRVKVLDIQTRVMSGNASLRGTLNPALLKLHYLRHLDLSF 132
           RGVRCSNQ+GH+ +L L         + +   +    SLRG ++P+LL+L +L HLDLS 
Sbjct: 67  RGVRCSNQSGHIVMLHLPAPPT----EFEDEYVHKFQSLRGEISPSLLELEHLTHLDLSC 122

Query: 133 NNFSGSQIPMFIGSLSKLEYLDLFAASFSG-------------------------PIPPL 167
           N+F  S IP F+ SLSK++YL+L  A+F+G                         PIPP 
Sbjct: 123 NDFERSHIPPFVASLSKIQYLNLSYANFTGRLPSQLGNLSNLLSLDLSSNDFEGRPIPPF 182

Query: 168 LGNLSRLQYLSLG------------------------YNKLLRAGNLDWISQLFSLRYLD 203
           L +L+++Q+LSL                         YN  L  GNL+W+S L SLR+LD
Sbjct: 183 LASLTKIQHLSLSYANFTGRLPSHFGNLSNLLSLDLSYNYDLNCGNLEWLSHLSSLRHLD 242

Query: 204 LSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNN 263
           L   NLSK+  +L      P L T                SFS +NSS  L  L LS N+
Sbjct: 243 LKYVNLSKAIHYL------PPLTT---------------PSFSPVNSSAPLAFLDLSDND 281

Query: 264 LTASIYPWLFNVS----------SIPDAPGPMISLRTLTLSDNELDGEIPKFFQNMFKLE 313
             +SIYPWLFN +          S PD  G   SL+ L L  N+++G +PK    + KLE
Sbjct: 282 YDSSIYPWLFNFTTTLTDNQFAGSFPDFIG-FSSLKELELDHNQINGTLPKSIGQLTKLE 340

Query: 314 GLSLRGNSLEGVISEH---FFSNFSYL-----------------------------KMGP 341
            L +  NSL+GVISE      S  SYL                             ++GP
Sbjct: 341 ALIIGSNSLQGVISEAHLLHLSRLSYLDLSSNSFNFNMSSEWVPPFQLIFLQLTSCQLGP 400

Query: 342 HFPKWLQTQKHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFI 401
            FP WL+TQK    LDIS++ ISD IP WF + +  +   N S+NQ+TG  PN +SS F 
Sbjct: 401 RFPSWLRTQKQLQSLDISTSDISDVIPHWFWNLTSLIYFFNISNNQITGTLPN-LSSKF- 458

Query: 402 LESP-GIDISSNHLEGPSPSLPSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLL 460
            + P  ID+SSNHLEG  P LPS   ++DLS NKFSG I+ LC+ +   L YLDLS+NLL
Sbjct: 459 -DQPLYIDMSSNHLEGSIPQLPSGLSWLDLSNNKFSGSITLLCTVANSYLAYLDLSNNLL 517

Query: 461 SGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFT 520
           SG+LP+CW Q+  L +LNL NN FS KIP S G LQ + TL L + N  GELPS LK   
Sbjct: 518 SGELPNCWPQWKSLTVLNLENNQFSRKIPESFGSLQLIQTLHLRNKNLIGELPSSLKKCK 577

Query: 521 HLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNN 580
            L  + L +N +SG IP WIG +L NL+VL+L+SN+F G I  ++C L  IQILDLS NN
Sbjct: 578 SLSFIDLAKNRLSGEIPPWIGGNLPNLMVLNLQSNKFSGSISPEVCQLKKIQILDLSDNN 637

Query: 581 ISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYK 640
           +SG IP+C +NFTAMT++ S     IT+++++  +        + D   + WKG E+E+K
Sbjct: 638 MSGTIPRCLSNFTAMTKKESL---TITYNFSMSYQHWS-----YVDKEFVKWKGREFEFK 689

Query: 641 NTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLS 700
           NTLGLVKS+DLSSNKL GE+P+E+ DL+ L+ LN SRNNLTG I   IGQL+SLD LDLS
Sbjct: 690 NTLGLVKSIDLSSNKLTGEIPKEVTDLLELVSLNFSRNNLTGLIPITIGQLKSLDILDLS 749

Query: 701 RNQFSGGIPSSLSQVNRLSVMDLSHNNLSGKIPTGTQLQSFNASVYDGNPELCGLPLPSK 760
           +NQ  G IPSSLS+++RLS +DLS+NNLSG IP GTQLQSFN   Y+GNP LCG PL  K
Sbjct: 750 QNQLIGEIPSSLSEIDRLSTLDLSNNNLSGMIPQGTQLQSFNTFSYEGNPTLCGPPLLKK 809

Query: 761 CWDEESAPGPAITKGRDDADTSEDEDQFITLGFFVTLILGFIVGFWGVCGTLLLNNSWKH 820
           C  +++   P +    DD     ++     + F+V++ LGFIVGFWGVCGTLLLNNSW+H
Sbjct: 810 CPRDKAEGAPNVYSDEDDIQQDGND-----MWFYVSIALGFIVGFWGVCGTLLLNNSWRH 864

Query: 821 CFY 823
            ++
Sbjct: 865 AYF 867

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224115848|ref|XP_002332072.1| predicted protein [Populus trichocarpa] gi|222831958|gb|EEE70435.1| predicted protein [Populus trichocarpa]

 Score =  637 bits (1642), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 389/918 (42%), Positives = 528/918 (57%), Gaps = 137/918 (14%)

Query: 35  CIEEERKALLKFKQGLVDEFGFLSSWGSEGEKKDCCNWRGVRCSNQTGHVKVLDLHGTGR 94
           C+E E++ALLK K  LVDE   LSSWG+     DCCNW GVRC+N+TGHV  L L+    
Sbjct: 2   CMEREKQALLKLKDDLVDENDQLSSWGT---SDDCCNWTGVRCNNRTGHVYSLQLN---- 54

Query: 95  VKVLDIQTRVMSGNASLRGTLNPALLKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLD 154
                   + +  +   +G ++  LL+L +L +LD+S      + IP FIGSL  L +L+
Sbjct: 55  --------QQLDDSMQFKGDISSPLLELKHLAYLDMS--EVRATSIPQFIGSLKHLMHLN 104

Query: 155 LFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAGNLDWISQLFSLRYLDLSSCNLSKSTD 214
           +     +G IP  LGNL+RL +L L YN   +  +L W+S+L +L++LDLS+ +LS +TD
Sbjct: 105 MSFCDLTGTIPHQLGNLTRLVFLDLSYNNFNKVESLSWLSRLPALKHLDLSTADLSGTTD 164

Query: 215 WLQEVDKIPSLKTLYLEQCDLQ--LQPTIHRSFSHLNSSP-SLETLGLSYNNLTASIYPW 271
           W Q ++ +PSL  LYL  C L   + P + RS    N SP SL  + LS N L +SI+PW
Sbjct: 165 WFQAINSLPSLHNLYLSGCGLSSVISPPLFRS----NYSPASLADIDLSQNTLKSSIFPW 220

Query: 272 LFNVSS---------------IPDAPGPMISLRTLTLSDNELDGE--------------- 301
           L N ++               IP A G MI+L +L LS N  +GE               
Sbjct: 221 LLNFNNSLVHLKLYDNEFQGKIPKALGAMINLESLLLSGNHFEGEIPRALANLGRLESLD 280

Query: 302 ------------------IPKFFQNMFKLEG--------------LSLRGNSLEGVISEH 329
                             I + F +  KL G              L +  N + G ISE 
Sbjct: 281 LSWNSLVGEVPDMKNLSFITRLFLSDNKLNGSWIENIRLLSDLAYLDISYNFMNGTISEI 340

Query: 330 FFSNFSYL--------------------------------KMGPHFPKWLQTQKHFSVLD 357
            F N + L                                K+GP FP+WL+TQ+  S LD
Sbjct: 341 NFLNLTELTHLDISSNAFVFNLSLNWTPPFQLDTLIMSSCKLGPSFPQWLRTQRRISELD 400

Query: 358 ISSAGISDSIPDWFSDTSHKLADLNFSHNQMTG---RFPNYISSMFILESPGIDISSNHL 414
           IS+AGI D I   F     KL  LN SHNQ+TG   + P+ +      +S  +D+SSN L
Sbjct: 401 ISNAGIEDDISSRFGKLPFKLNYLNISHNQITGEAHKLPSVVG-----DSATVDMSSNFL 455

Query: 415 EGPSPSLPSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNML 474
            G  P LP NA  ++LSKN FSG IS LCS + + L YLDLS N LSG++PDCW+    L
Sbjct: 456 HGSLP-LPLNATILNLSKNLFSGTISNLCSIACERLFYLDLSDNCLSGEIPDCWMTCKEL 514

Query: 475 RILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISG 534
            ILNLA NNFSG+IP S G L  + TL+L +N+FSGELP  L N T L ++ L EN +SG
Sbjct: 515 NILNLAGNNFSGRIPASLGSLVFIQTLNLRNNSFSGELPPSLANCTQLEILDLGENRLSG 574

Query: 535 NIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTA 594
            IP+WIGE+L +LVVL LRSN   G +P  LCHLA +QILDLS NNIS +IP CF+NF+A
Sbjct: 575 KIPSWIGENLSSLVVLRLRSNYLDGTLPLVLCHLAHLQILDLSHNNISDDIPHCFSNFSA 634

Query: 595 MTQERSYNSSAITFSYAVPSRTTMLPVHI--FFDIVLLTWKGSEYEYKNTLGLVKSVDLS 652
           M++  S      T+ +   S    LP  I  + D V +  KG E EY  TL  VK +DLS
Sbjct: 635 MSKNGS------TYEFIGHSNNHTLPFFIILYHDSVRVVLKGMELEYGKTLEQVKIMDLS 688

Query: 653 SNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSL 712
           SN L GE+P+ I  L GL+ L+LS N LTG I P+IG ++SL+ LDLS NQ SGG+P+ L
Sbjct: 689 SNNLSGEIPDGIAKLEGLVSLHLSNNRLTGIIPPRIGLMRSLESLDLSTNQLSGGLPNGL 748

Query: 713 SQVNRLSVMDLSHNNLSGKIPTGTQLQSFNASVYDGNPELCGLPLPSKCWDEESAPGPAI 772
             +N LS +++S+NNLSGKIP  TQLQ+F+ + +  N ELCG PL ++C  E+ A  P+I
Sbjct: 749 RDLNFLSSLNVSYNNLSGKIPLSTQLQTFDNNSFVANAELCGKPLSNECAAEQ-AHDPSI 807

Query: 773 TKGRDDADTSEDEDQFITLGFFVTLILGFIVGFWGVCGTLLLNNSWKHCFYNFLTVTKDW 832
           ++G  + D  +DED FI+  F++++  GF  GFW VCGTLLL   W+H F+  +   +DW
Sbjct: 808 SQGSKNVDI-QDEDGFISRRFYLSMGTGFATGFWAVCGTLLLYRPWRHAFFRLMNHIEDW 866

Query: 833 LYVTAVVNIGKIQQKMRS 850
           L+VT V+ + ++Q+++R+
Sbjct: 867 LHVTTVLIMARLQRRLRN 884

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147811986|emb|CAN77037.1| hypothetical protein VITISV_012666 [Vitis vinifera]

 Score =  620 bits (1598), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 397/869 (45%), Positives = 513/869 (59%), Gaps = 100/869 (11%)

Query: 8   LFQYRVLFSAIILLHLEPKTADS-----SSIRCIEEERKALLKFKQGLVDEFGFLSSWGS 62
           LFQ+  L S ++LL  +     S     + + C+E ER+ALL FKQG+VD FG LSSWG+
Sbjct: 5   LFQH-FLGSFLLLLCFKAGLGSSFMLGDAKVGCMERERQALLHFKQGVVDHFGTLSSWGN 63

Query: 63  EGEKKDCCNWRGVRCSNQTGHVKVLDLHGTGRVKVLDIQTRVMSGNASLRGTLNPALLKL 122
              + DCC WRGV C NQTGHV +LDLHGTG   + D Q  ++ G  S    L P+L +L
Sbjct: 64  GEGETDCCKWRGVECDNQTGHVIMLDLHGTGHDGMGDFQ--ILGGRIS---QLGPSLSEL 118

Query: 123 HYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYN 182
            +L+HL+LSFN                          F G +P  LGNLS LQ L L  N
Sbjct: 119 QHLKHLNLSFN-------------------------LFEGVLPTQLGNLSNLQSLDLSDN 153

Query: 183 KLLRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPS-LKTLYLEQCDLQ-LQPT 240
             +   NL+W+S L SL +LDLS  +LSK+  W Q ++K+ S L  LYL    L  + PT
Sbjct: 154 FEMSCENLEWLSYLPSLTHLDLSGVDLSKAIHWPQAINKMSSSLTELYLSFTKLPWIIPT 213

Query: 241 IHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSS---------------IPDAPGPM 285
           I  S SH NSS SL  L LS N LT+SI PWLF  SS               I DA G M
Sbjct: 214 I--SISHTNSSTSLAVLDLSLNGLTSSINPWLFYFSSSLVHLDLFGNDLNGSILDALGNM 271

Query: 286 ISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPK 345
            +L  L LS N+L+GEIPK F     L  L L  N L G I +  F N + L        
Sbjct: 272 TNLAYLDLSLNQLEGEIPKSFS--ISLAHLDLSWNQLHGSIPD-AFGNMTTL-------- 320

Query: 346 WLQTQKHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESP 405
                   + LD+SS  ++ SIPD   + +  LA L  S NQ+ G  PN  ++     S 
Sbjct: 321 --------AYLDLSSNHLNGSIPDALGNMT-TLAHLYLSANQLEGTLPNLEAT----PSL 367

Query: 406 GIDISSNHLEGPSPSLPSNAFYIDLSKNKFSGPISFLCSFSGQN---LVYLDLSSNLLSG 462
           G+D+SSN L+G  P    N  ++DLSKN FSG +S  C  + Q+   L+++DLS+N LSG
Sbjct: 368 GMDMSSNCLKGSIPQSVFNGQWLDLSKNMFSGSVSLSCGTTNQSSWGLLHVDLSNNQLSG 427

Query: 463 KLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHL 522
           +LP CW Q+  L +LNL NNNFSG I NS G L +M TL L +N+ +G LP  LKN   L
Sbjct: 428 ELPKCWEQWKYLIVLNLTNNNFSGTIKNSIGMLHQMQTLHLRNNSLTGALPLSLKNCRDL 487

Query: 523 RVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNIS 582
           R++ L +N +SG +PAWIG  L +L+V++LRSN F G IP  LC L  +Q+LDLS NN+S
Sbjct: 488 RLIDLGKNKLSGKMPAWIGGXLSDLIVVNLRSNEFNGSIPLNLCQLKKVQMLDLSSNNLS 547

Query: 583 GNIPKCFNNFTAMTQERS----YNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYE 638
           G IPKC NN TAM Q  S    Y      F  ++           + D  ++ WKG E E
Sbjct: 548 GIIPKCLNNLTAMGQNGSLVIAYEERLFVFDSSIS----------YIDNTVVQWKGKELE 597

Query: 639 YKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLD 698
           YK TL LVKS+D S+NKL GE+P E+ DLV L  LNLS NNL G I   IGQL+SLDF B
Sbjct: 598 YKKTLXLVKSIDFSNNKLNGEIPIEVTDLVELXSLNLSXNNLIGSIPLMIGQLKSLDFXB 657

Query: 699 LSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGKIPTGTQLQSFNASVYDGNPELCGLPLP 758
           LS+NQ  GGIP SLSQ+  LSV+DLS N LSGKIP+GTQL SFNAS YDGNP LCG PL 
Sbjct: 658 LSQNQLHGGIPVSLSQIAGLSVLDLSDNILSGKIPSGTQLHSFNASTYDGNPGLCGPPLL 717

Query: 759 SKCWDEESAPGPAITKGRDDADTSEDEDQFITLGFFVTLILGFIVGFWGVCGTLLLNNSW 818
            KC ++E+    + T   ++ D  +D +    + F+  ++LGFI+GFWGVCGTLLLN SW
Sbjct: 718 KKCQEDETKE-VSFTSLINEKDIQDDTN---NIWFYGNIVLGFIIGFWGVCGTLLLNRSW 773

Query: 819 KHCFYNFLTVTKDWLYVTAVVNIGKIQQK 847
           ++ ++  L   KDWL++T   NI +++++
Sbjct: 774 RYSYFQTLNKIKDWLHMTTTTNINRLRRR 802

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147834202|emb|CAN64227.1| hypothetical protein VITISV_011552 [Vitis vinifera]

 Score =  575 bits (1483), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 393/922 (42%), Positives = 504/922 (54%), Gaps = 172/922 (18%)

Query: 31  SSIRCIEEERKALLKFKQGLVDEFGFLSSWGSEGEKKDCCNWRGVRCSNQTGHVKVLDLH 90
           + + CIE ER+ALL FKQG+VD++G LSSWG+  +K+DCC WRGV C+NQTGHV +    
Sbjct: 32  AKVGCIERERQALLHFKQGVVDDYGMLSSWGNGEDKRDCCKWRGVECNNQTGHVIM---- 87

Query: 91  GTGRVKVLDIQTRVMSGNASLRGTLNPALLKLHYLRHLDLSFNNFSGSQIPMFIGSLSKL 150
                        +      L G + P+L KL +L+HL+LS+N+F G             
Sbjct: 88  -------------LDLXGGYLGGKIGPSLAKLQHLKHLNLSWNDFEG------------- 121

Query: 151 EYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAGNLDWISQLFSLRYLDLSSCNLS 210
                        +P  LGNLS LQ L L YN+ +  GNLDW+S L  L +LDLS  NLS
Sbjct: 122 ------------ILPTQLGNLSNLQSLDLRYNRDMTCGNLDWLSHLHLLTHLDLSFVNLS 169

Query: 211 KSTDWLQEVDKIPSLKTLYLEQCDLQ-LQPTIHRSFSHLNSSPSLETLGLSYNNLTASIY 269
           K+  W Q V K+P+L  LYL    L  + PTI  S SH+NSS SL  L L  N+LT+SIY
Sbjct: 170 KAIHWPQAVKKMPALTELYLSNTQLPPIDPTI--SISHINSSTSLAVLELFENDLTSSIY 227

Query: 270 PWLFNVSS---------------IPDAPGPMISLRTLTLSDNELDGEIPKFFQNMFKLEG 314
           PWL N SS               IPDA G M +L  L LS N+L+GEIPK F     L  
Sbjct: 228 PWLLNFSSCLVHLDLSNNHLNGSIPDAFGNMTTLAYLDLSFNQLEGEIPKSFS--INLVT 285

Query: 315 LSLRGNSLEGVISEHF-------FSNFSYLKMGPHFPKWLQT------------------ 349
           L L  N L G I + F       + +FS  ++    PK L+                   
Sbjct: 286 LDLSWNHLHGSIPDAFGNMATLAYLHFSGNQLEGEIPKSLRGLCDLQILSLSQNNLTGLL 345

Query: 350 QKHF--------SVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFI 401
           +K F         VLD+S      S PD  S  S +L +L+   NQ+ G  P  I  +  
Sbjct: 346 EKDFLACSNNTLEVLDLSHNQFKGSFPD-LSGFS-QLRELHLEFNQLNGTLPESIGQLAQ 403

Query: 402 LESPGI-------DISSNHLEGPSPSLPSNAFYIDLSKNKFSGPISFL------------ 442
           L+   +        +S+NHL G S       + +DLS N  +  IS              
Sbjct: 404 LQVLSLRSNSLRGTVSANHLFGLS-----KLWDLDLSFNSLTVNISLEQVPQFQAIEIKL 458

Query: 443 --CSF---------SGQNLVYLDLSS----------------NLL-------------SG 462
             C           + ++L  LD+S+                NL+             SG
Sbjct: 459 ASCKLGPHFPNWLRTQKHLSMLDISASGIANAQFLYRAGLLINLVGVCLISTSQIIDCSG 518

Query: 463 KLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHL 522
           +LP CW Q+  L +LNLANNNFSGKI NS G    M TL L +N+ +G LP  LKN   L
Sbjct: 519 ELPKCWEQWKDLIVLNLANNNFSGKIKNSIGLSYHMQTLHLRNNSLTGALPWSLKNCRDL 578

Query: 523 RVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNIS 582
           R++ L +N +SG IP WIG SL NL+V++LRSN F G IP  LC L  I +LDLS NN+S
Sbjct: 579 RLLDLGKNKLSGKIPGWIGGSLSNLIVVNLRSNEFNGSIPLNLCQLKKIHMLDLSSNNLS 638

Query: 583 GNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNT 642
           G IPKC NN + M Q  S     IT+   +      L    ++D  L+ WKG E EY  T
Sbjct: 639 GTIPKCLNNLSGMAQNGSL---VITYEEDL----LFLMSLSYYDNTLVQWKGKELEYNKT 691

Query: 643 LGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRN 702
           LGLVKS+D S+NKL GE+P E+ DLV L+ LNLSRN L G I   IGQL+SLD LDLSRN
Sbjct: 692 LGLVKSIDFSNNKLIGEIPTEVTDLVELVSLNLSRNYLIGPIPLMIGQLKSLDSLDLSRN 751

Query: 703 QFSGGIPSSLSQVNRLSVMDLSHNNLSGKIPTGTQLQSFNASVYDGNPELCGLPLPSKCW 762
           +  GGIP SLSQ+ RLSV+DLS N LSGKIP+GTQLQSFNAS YDGNP LCG PL  KC 
Sbjct: 752 RLHGGIPXSLSQIARLSVLDLSDNILSGKIPSGTQLQSFNASTYDGNPGLCGPPLLKKCQ 811

Query: 763 DEESAPGPAITKGRDDADTSEDEDQFITLGFFVTLILGFIVGFWGVCGTLLLNNSWKHCF 822
           ++E+    + T   ++ D  +D +    + F+  ++LGFI+GFWGVCGTLLLN+SW++ +
Sbjct: 812 EDENRE-VSFTGLSNEEDIQDDAN---NIWFYGNIVLGFIIGFWGVCGTLLLNSSWRYAY 867

Query: 823 YNFLTVTKDWLYVTAVVNIGKI 844
           + FL+  KDWLYVT  VN+ KI
Sbjct: 868 FQFLSKIKDWLYVTTTVNMNKI 889

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359477923|ref|XP_002268448.2| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  563 bits (1452), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 359/878 (40%), Positives = 483/878 (55%), Gaps = 93/878 (10%)

Query: 31  SSIRCIEEERKALLKFKQGLVDEFGFLSSWGSEGEKKDCCNWRGVRCSNQTGHVKVLDLH 90
           S++ C E E++ALL FK  L D    LSSW      KDCC W GV C N T  V  LDL 
Sbjct: 21  STLVCNETEKRALLSFKHALSDPGHRLSSWSIH---KDCCGWNGVYCHNITSRVIQLDLM 77

Query: 91  GTGRVKVLDIQTRVMSGNASLRGTLNPALLKLHYLRHLDLSFNNFSGSQIPMFIGSLSKL 150
             G            S N SL G ++ ALL+L +L +LDLSFN+F G+ IP F+GS+  L
Sbjct: 78  NPG------------SSNFSLGGKVSHALLQLEFLNYLDLSFNDFGGTPIPSFLGSMQSL 125

Query: 151 EYLDLFAASFSGPIPPLLGNLSRLQYLSLG-----YNKLLRAGNLDWISQLFSLRYLDLS 205
            YLDL  ASF G IPP LGNLS LQYLSLG     Y   L   NL W S L SL YL +S
Sbjct: 126 TYLDLKYASFGGLIPPQLGNLSNLQYLSLGGAYSSYKPQLYVENLGWFSHLSSLEYLHMS 185

Query: 206 SCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLT 265
             +L +   WL+    + SL  LYL  C+L     +  S  ++N + SL  L L  N+  
Sbjct: 186 EVDLQREVHWLESTSMLSSLSKLYLGACELD---NMSPSLGYVNFT-SLTVLSLPLNHFN 241

Query: 266 ASIYPWLFNV-------------SSIPDAPGPMISLRTLTLSDNELDGEIPKFFQNMFKL 312
             +  WLFN+               IP+  G + SL  L+L  N L+G +P     +  L
Sbjct: 242 HEMPNWLFNLPLNSLDLSSNHLTGQIPEYLGNLSSLTVLSLYGNRLNGTLPSSLWLLSNL 301

Query: 313 EGLSLRGNSLEGVISEHFFSNFSYLK--------------------------------MG 340
             L +  NSLEG ISE  F   S LK                                +G
Sbjct: 302 VYLDIGNNSLEGTISEVHFDKLSKLKYIDMSSTSLIFKVKSNRVPAFQLEELWMSTCQIG 361

Query: 341 PHFPKWLQTQKHFSVLDISSAGISDSIPDWFSD-TSHKLADLNFSHNQMTGRFPNYISSM 399
           P FP W+QTQ     +DIS +GI D  P WF    SH    ++ S NQ++G       S 
Sbjct: 362 PKFPTWIQTQTSLQCVDISKSGIVDIAPKWFWKWASHIDLLIDLSDNQISGNL-----SG 416

Query: 400 FILESPGIDISSNHLEGPSPSLPSNAFYIDLSKNKFSGPIS-FLCS-FSGQ-NLVYLDLS 456
            +L +  ID+ SN   G  P L      ++++ N FSGPIS FLC   +G+ NL  LD+S
Sbjct: 417 VLLNNTYIDLRSNCFMGELPRLSPQVSRLNMANNSFSGPISPFLCQKLNGKSNLEILDMS 476

Query: 457 SNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLL 516
           +N LSG+L  CW  +  L  LNL NNN SGKIP+S G L ++  L LH+N  SG++P  L
Sbjct: 477 TNNLSGELSHCWTYWQSLTRLNLGNNNLSGKIPDSMGSLFELEALHLHNNRLSGDIPPSL 536

Query: 517 KNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDL 576
           +N   L ++ L  N +SGN+P+W+GE    L  L LRSN+  G IP Q+C L+ + ILD+
Sbjct: 537 RNCKSLGLLDLGGNKLSGNLPSWMGERT-TLTALRLRSNKLIGNIPPQICQLSSLIILDV 595

Query: 577 SLNNISGNIPKCFNNFTAM----TQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTW 632
           + N++SG IPKCFNNF+ M    T++ S+  S + F Y   S          ++ ++L  
Sbjct: 596 ANNSLSGTIPKCFNNFSLMATTGTEDDSF--SVLEFYYDYYSYYNRYTGAPNYENLMLVI 653

Query: 633 KGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQ 692
           KG E EY++ L  V+S+DLSSN L G +P EI  L GL  LNLS NNL G I  K+G ++
Sbjct: 654 KGKESEYRSILKFVRSIDLSSNDLWGSIPTEISSLSGLESLNLSCNNLMGSIPEKMGSMK 713

Query: 693 SLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGKIPTGTQLQSFNASVYDGNPEL 752
           +L+ LDLSRN  SG IP S+  ++ LS ++LS+NN SG+IP+ TQLQSF+   Y GN EL
Sbjct: 714 ALESLDLSRNHLSGEIPQSMKNLSFLSHLNLSYNNFSGRIPSSTQLQSFDEISYIGNAEL 773

Query: 753 CGLPLPSKCWDEESAPGPAITKGRDDADTSEDEDQFITLGFFVTLILGFIVGFWGVCGTL 812
           CG+PL   C ++E        +G D  D +E+  +     F++ + LGFIVGFWGVCG L
Sbjct: 774 CGVPLTKNCTEDEDF------QGIDVIDENEEGSEIP--WFYIGMGLGFIVGFWGVCGAL 825

Query: 813 LLNNSWKHCFYNFLTVTKDWLYVTAVVNIGKIQQKMRS 850
           L   +W+H ++ FL   KDW+YV   + + ++Q  +R+
Sbjct: 826 LFKKAWRHAYFQFLYRVKDWVYVAIAIRLNRLQNNLRA 863

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224105895|ref|XP_002333753.1| predicted protein [Populus trichocarpa] gi|222838401|gb|EEE76766.1| predicted protein [Populus trichocarpa]

 Score =  558 bits (1438), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 377/973 (38%), Positives = 521/973 (53%), Gaps = 159/973 (16%)

Query: 13  VLFSAIILLHLE----PKTADSSSIRCIEEERKALLKFKQGLVDEFGFLSSWGSEGEKKD 68
           VL   ++LLH+        A    I CIE ER+ALLKFK+ ++DE G LSSWG E EK+D
Sbjct: 6   VLIIVLVLLHIPFPGFITGATGGEIGCIERERQALLKFKEDIIDEDGVLSSWGGEEEKRD 65

Query: 69  CCNWRGVRCSNQTGHVKVLDLHGTGRVKVLDIQTRVMSGNASLRGTLNPALLKLHYLRHL 128
           CC WRGV C N TGHV  L+LH +   +              L G ++ +LL+L +L +L
Sbjct: 66  CCKWRGVGCDNITGHVTSLNLHSSPLYE---------HHFTPLTGKVSNSLLELQHLNYL 116

Query: 129 DLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGN------------------ 170
           DLS NN   S I  FIGSLS L YL+L    F+  IP  L N                  
Sbjct: 117 DLSLNNLDES-IMDFIGSLSSLRYLNLSYNLFTVTIPYHLRNLSRLQSLDLSYSFDASVE 175

Query: 171 -------LSRLQYLSLGYNKLLRAGNLDW---ISQLFSLRYLDLSSCNL----------- 209
                  LS L++L L  + L +    DW   ++ L  L+ L L+ C+L           
Sbjct: 176 NLGWLSHLSSLEHLDLSGSDLSKVN--DWLQVVTNLPRLKDLRLNQCSLTDIIPSPLSFM 233

Query: 210 -----------------SKSTDWLQEVD----------------------KIPSLKTLYL 230
                            S    WL  +                       K+ +L  L L
Sbjct: 234 NSSKFLAVLHLSNNNLSSAIYPWLYNLSNSLADLDLSGNQLQGLVPDGFRKMSALTNLVL 293

Query: 231 EQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMI---- 286
            +   QL+  I RS   +    SL TL L +NNLT  +     N+    ++   ++    
Sbjct: 294 SRN--QLEGGIPRSLGEM---CSLHTLDLCHNNLTGELSDLTRNLYGRTESSLEILRLCQ 348

Query: 287 --------------SLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFS 332
                         SLR L +S+N+L+G IP+    + KL+   +  NSL+G++S   FS
Sbjct: 349 NQLRGSLTDIARFSSLRELDISNNQLNGSIPESIGFLSKLDYFDVSFNSLQGLVSGGHFS 408

Query: 333 NFSYLK--------------------------------MGPHFPKWLQTQKHFSVLDISS 360
           N S LK                                +GP FPKWL+TQ    +LDISS
Sbjct: 409 NLSKLKHLDLSYNSLVLRFKSDWDPAFQLKNIHLSSCHLGPCFPKWLRTQIKVRLLDISS 468

Query: 361 AGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILES-PGIDISSNHLEGPSP 419
           A ISD++P+WF +   KLA LN SHN M G  P++ S   + ++ PG D+S N  EG  P
Sbjct: 469 ASISDTVPNWFWNLLPKLAFLNISHNLMRGTLPDFSSVDAVDDTFPGFDLSFNRFEGLLP 528

Query: 420 SLPSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNL 479
           + P N   + LS N FSGPIS +C+  G++L +LDLS+NLL+G+LP+C++ ++ L +LNL
Sbjct: 529 AFPFNTASLILSNNLFSGPISLICNIVGKDLSFLDLSNNLLTGQLPNCFMNWSTLVVLNL 588

Query: 480 ANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAW 539
           ANNN SG+IP+S G L  + TLSL+ N+  GELP  LKN + L+ + L  N +SG IPAW
Sbjct: 589 ANNNLSGEIPSSVGSLFSLQTLSLNKNSLYGELPMSLKNCSMLKFLDLSRNQLSGEIPAW 648

Query: 540 IGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQER 599
           IGESL +L+ L L+SN F G IP  LC L +++ILDLS N ISG IPKC NN T M   +
Sbjct: 649 IGESLSSLMFLSLKSNEFIGSIPLHLCQLTNLRILDLSQNTISGAIPKCLNNLTTMVL-K 707

Query: 600 SYNSSAITFSYAVPSRT-TMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGG 658
               + I   Y    R   +     + +   + WKG +YEY+  LGL++ +D + N L G
Sbjct: 708 GEAETIIDNLYLTSMRCGAIFSGRYYINKAWVGWKGRDYEYERYLGLLRVIDFAGNNLSG 767

Query: 659 EVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRL 718
           E+PEEI  L+GL+ LNLSRNNLTG I   IG L+SL+ LDLS NQFSG IP ++  +N L
Sbjct: 768 EIPEEITGLLGLVALNLSRNNLTGVIPQTIGLLKSLESLDLSGNQFSGAIPVTMGDLNFL 827

Query: 719 SVMDLSHNNLSGKIPTGTQLQSFNASVYDGNPELCGLPLPSKCWDEESAPGPAITKG--R 776
           S +++S+NNLSG+IP+ TQLQSF+AS + GNP LCGLP+ +KC   +  P   +  G  +
Sbjct: 828 SYLNVSYNNLSGQIPSSTQLQSFDASAFIGNPALCGLPVTNKCLGGD-LPRNLVMNGVIQ 886

Query: 777 DDADTSEDEDQFITLGFFVTLILGFIVGFWGVCGTLLLNNSWKHCFYNFLTVTKDWLYVT 836
           D+ +T  +   +    F   + +GF V FWGV G LLL  SW+H ++ FL  + DWLYV 
Sbjct: 887 DNQETVHEFSAW----FCTAMGIGFSVFFWGVSGALLLIRSWRHAYFRFLDESWDWLYVK 942

Query: 837 AVVNIGKIQQKMR 849
             V   ++Q++ +
Sbjct: 943 VAVRKARLQREFQ 955

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225464712|ref|XP_002276171.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  556 bits (1432), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 352/762 (46%), Positives = 440/762 (57%), Gaps = 79/762 (10%)

Query: 125  LRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKL 184
            L HLDLS N   G  IP   G +  LEYLDLF     G IP  L + S L +L L  N L
Sbjct: 287  LVHLDLSINQIQG-LIPDTFGEMVSLEYLDLFFNQLEGEIPQSLTSTS-LVHLDLSVNHL 344

Query: 185  LRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDL--QLQPTIH 242
                  D    + SL YLDLS   L       +    + SL+ + L    L  QL   + 
Sbjct: 345  -HGSIPDTFGHMTSLSYLDLSLNQLEGGIP--KSFKNLCSLQMVMLLSNSLTAQLPEFVQ 401

Query: 243  RSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEI 302
             S S   S  +LE L LS+N  T S           P+  G  + L  L +  N L+G  
Sbjct: 402  NSLS--CSKDTLEVLVLSWNQFTGSF----------PNFTGFSV-LGHLYIDHNRLNGTF 448

Query: 303  PKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYL------------------------- 337
            P+    + +LE L + GNSL G I+E   S+ S L                         
Sbjct: 449  PEHIGQLSQLEVLEISGNSLHGNITEAHLSSLSKLYWLDLSSNSLALELSPEWTPPFQVG 508

Query: 338  -------KMGPHFPKWLQTQKHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTG 390
                   KMGP+FP WLQTQK    LDIS++ ISD IP WF + + KL  L  ++NQ+ G
Sbjct: 509  YLGLLSCKMGPNFPGWLQTQKDLFSLDISNSSISDVIPSWFWNLTSKLIKLRIANNQIRG 568

Query: 391  RFPNYISSMFILESPGIDISSNHLEGPSPSLPSNAFYIDLSKNKFSGPISFLCSFSGQNL 450
            R P    S+ +  +  ID+S N  EGP PSLPS    + LSKN FSG IS LC+     L
Sbjct: 569  RVP----SLRMETAAVIDLSLNRFEGPIPSLPSGVRVLSLSKNLFSGSISLLCTIVDGAL 624

Query: 451  VYLDLSSNLLSGKLPDCWLQF-NMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFS 509
             YLDLS NLLSG LPDCW Q+ + L+ILNLANNNFSGK+P S G L  + TL L++N F 
Sbjct: 625  SYLDLSDNLLSGALPDCWQQWRDQLQILNLANNNFSGKLPYSLGSLAALQTLHLYNNGFL 684

Query: 510  GELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLA 569
            GELPS L N T LR+V + +N  SG IP WIGE L +LVVL LRSN F+G I   +C L 
Sbjct: 685  GELPSSLMNCTKLRLVDMGKNRFSGEIPTWIGERLSDLVVLSLRSNEFHGSISSDICLLK 744

Query: 570  DIQILDLSLNNISGNIPKCFNNFTAMTQE-----------------RSYNSSAITFSYAV 612
            ++QILD S NNISG IP+C NNFTAM Q+                 R  N+  IT  +A 
Sbjct: 745  ELQILDFSRNNISGTIPRCLNNFTAMAQKMIYSVIAHDYLALSIVPRGRNNLGITPRWAY 804

Query: 613  PSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIG 672
             S  +   +  + D  L+ WKG E+EYKN LGLV+S+DLSSNKL GE+P+EI  L+ LI 
Sbjct: 805  -SSGSFDTIARYVDSALIPWKGGEFEYKNILGLVRSIDLSSNKLSGEIPKEITKLMELIS 863

Query: 673  LNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGKI 732
            LNLSRN+L G I   IGQL+SLD LDLS+NQ  G IPSSLSQ++RLSV+DLS NNLSG+I
Sbjct: 864  LNLSRNHLNGQIPSMIGQLKSLDVLDLSKNQLDGKIPSSLSQIDRLSVLDLSSNNLSGQI 923

Query: 733  PTGTQLQSFNASVYDGNPELCGLPLPSKCWDEESAPGPAITKGRDDADTSEDEDQFITLG 792
            P+GTQLQ F AS Y GNPELCG PL +KC ++E+A     + G +D D  +DE       
Sbjct: 924  PSGTQLQGFEASSYMGNPELCGSPLKTKCQEDETAQTSPTSDGNED-DLQDDE---FDPW 979

Query: 793  FFVTLILGFIVGFWGVCGTLLLNNSWKHCFYNFLTVTKDWLY 834
            F+V++ LGF+VGFWGV GTL+L +SW   ++ FL   KDW +
Sbjct: 980  FYVSIALGFLVGFWGVWGTLVLKSSWSEAYFRFLNKIKDWFF 1021

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225466147|ref|XP_002270042.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Vitis vinifera]

 Score =  555 bits (1429), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 362/819 (44%), Positives = 485/819 (59%), Gaps = 88/819 (10%)

Query: 90   HGTGRVKVLDIQTRVMSGNASLRGTLNPALLKLHY-LRHLDLSFNNFSGSQIPMFIGSLS 148
            HG   V ++ +    +SGN  L  ++ P LL     L HLDLSFN  +GS      G++S
Sbjct: 236  HGNSSVPLVFLD---LSGNY-LTSSIYPWLLNFSTTLLHLDLSFNGLNGSIPEYAFGNMS 291

Query: 149  KLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAGNL-DWISQLFSLRYLDLSSC 207
             LEYLDL ++     IP  +G++  L YL +  N+L   G++ D + ++  L +LDLS  
Sbjct: 292  SLEYLDLHSSELDDEIPDTIGDMGSLAYLDISENQLW--GSIPDTVGKMVLLSHLDLSLN 349

Query: 208  NLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTAS 267
             L  S      V  + SLK L L +    LQ  I +S S+L    +L+ L L  NNL+  
Sbjct: 350  QLQGSIP--DTVGNMVSLKKLSLSEN--HLQGEIPKSLSNL---CNLQELELDRNNLSGQ 402

Query: 268  IYPWLFNVS----------------SIPDAPGPMISLRTLTLSDNELDGEIPKFFQNMFK 311
            + P     +                S+P   G   SLR L L  N+L+G +P+    +  
Sbjct: 403  LAPDFVACANDTLETLFLSDNQFSGSVPALIG-FSSLRELHLDFNQLNGTLPESVGQLAN 461

Query: 312  LEGLSLRGNSLEGVISEHFFSNFSYL--------------------------------KM 339
            L+ L +  NSL+G ISE    N S+L                                K+
Sbjct: 462  LQSLDIASNSLQGTISEAHLFNLSWLSYLNLSSNSLTFNMSLDWVPPFQLLSLRLASCKL 521

Query: 340  GPHFPKWLQTQKHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSM 399
            GP FP WL+TQ   S LDIS++ ISD +PDWF + +  +  L+ S+N++ G  PN +SS 
Sbjct: 522  GPRFPSWLRTQNQLSELDISNSEISDVLPDWFWNVTSTVNTLSISNNRIKGTLPN-LSSE 580

Query: 400  FILESPGIDISSNHLEGPSPSLPSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNL 459
            F   S  ID+SSN  EG  P LP +  ++DLS NK SG IS LC+  G  L+ LDLS+N 
Sbjct: 581  FGSFS-NIDMSSNCFEGSIPQLPYDVQWLDLSNNKLSGSISLLCTV-GTELLLLDLSNNS 638

Query: 460  LSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNF 519
            LSG LP+CW Q+  L +LNL NN FSG+IP S G L+ + TL L +NN +GELP   KN 
Sbjct: 639  LSGGLPNCWAQWESLVVLNLENNRFSGQIPISFGSLRSIQTLHLRNNNLTGELPLSFKNC 698

Query: 520  THLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLN 579
            T LR + L +N +SG IP WIG SL NL VL+L SNRF G I  +LC L +IQILDLS N
Sbjct: 699  TSLRFIDLAKNRLSGKIPEWIGGSLPNLTVLNLGSNRFSGGICPELCQLKNIQILDLSSN 758

Query: 580  NISGNIPKCFNNFTAMTQERS----YNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGS 635
            N+ G +P+C   FTAMT++ S    +N S   FS    S+ +++    + D  L+ WKG 
Sbjct: 759  NMLGVVPRCVGGFTAMTKKGSLVIVHNYSFADFS----SKYSLIRNAFYVDRALVKWKGR 814

Query: 636  EYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLD 695
            E+EYK+TLGLVKS+D SSNKL GE+PEE++DLV L+ LNLSRNNLT  I  +IGQL+SL+
Sbjct: 815  EFEYKSTLGLVKSIDFSSNKLSGEIPEEVIDLVELVSLNLSRNNLTRLIPARIGQLKSLE 874

Query: 696  FLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGKIPTGTQLQSFNASVYDGNPELCGL 755
             LDLS+NQ  G IP+SL +++ LSV+DLS NNLSGKIP GTQLQSFN   Y GNP LCGL
Sbjct: 875  VLDLSQNQLFGEIPASLVEISDLSVLDLSDNNLSGKIPQGTQLQSFNIDSYKGNPALCGL 934

Query: 756  PLPSKCWDEESAPGPAITKGRDDADTSEDEDQFITLG----FFVTLILGFIVGFWGVCGT 811
            PL  KC+++         K + D+ T   ED+    G    F+V++ LGFIVGFWGVCGT
Sbjct: 935  PLLKKCFED---------KIKQDSPTHNIEDKIQQDGNDMWFYVSVALGFIVGFWGVCGT 985

Query: 812  LLLNNSWKHCFYNFLTVTKDWLYVTAVVNIGKIQQKMRS 850
            LLLNNSW++ ++ FL   KDWLYV   +N+ ++Q+ ++S
Sbjct: 986  LLLNNSWRYAYFQFLNKIKDWLYVIIAINMARLQRSLQS 1024

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359490576|ref|XP_003634117.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Vitis vinifera]

 Score =  553 bits (1425), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 345/762 (45%), Positives = 458/762 (60%), Gaps = 70/762 (9%)

Query: 125 LRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKL 184
           L HLDLS+N+ +GS  P   G+++ L YLDL +    G IP   GN++ L YL L +NKL
Sbjct: 243 LVHLDLSWNDLNGS-TPDAFGNMTTLAYLDLSSNELRGSIPDAFGNMTTLAYLDLSWNKL 301

Query: 185 LRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRS 244
            R    D    + SL YLDLS   L       + +  + +L+ L+L Q +L    T  + 
Sbjct: 302 -RGSIPDAFGNMTSLAYLDLSLNELEGEIP--KSLTDLCNLQELWLSQNNL----TGLKE 354

Query: 245 FSHLNS-SPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIP 303
             +L   + +LE L LSYN L  S           P+  G    LR L L  N+L G + 
Sbjct: 355 KDYLACPNNTLEVLDLSYNQLKGSF----------PNLSG-FSQLRELFLDFNQLKGTLH 403

Query: 304 KFFQNMFKLEGLSLRGNSLEGVIS-EHFF--SNFSYL----------------------- 337
           +    + +L+ LS+  NSL G +S  H F  SN SYL                       
Sbjct: 404 ESIGQLAQLQLLSIPSNSLRGTVSANHLFGLSNLSYLDLSFNSLTFNISLEQVPQFRASS 463

Query: 338 ------KMGPHFPKWLQTQKHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGR 391
                 K+GP FP WLQTQ+  S LDIS++GISD IP+WF + +  L  LN S+N ++G 
Sbjct: 464 ILLASCKLGPRFPNWLQTQEVLSELDISASGISDVIPNWFWNLTSDLNWLNISNNHISGT 523

Query: 392 FPNYISSMFILESPGIDISSNHLEGPSPSLPSNAFYIDLSKNKFSGPISFLCSFSGQ--- 448
            PN  +  ++    G+D+SSN LEG  P    NA ++DLSKN FSG IS  C    Q   
Sbjct: 524 LPNLQARSYL----GMDMSSNCLEGSIPQSVFNARWLDLSKNLFSGSISLSCGTPNQPSW 579

Query: 449 NLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNF 508
            L +LDLS+N LSG+LP+CW Q+  L +L+LANNNFSGKI NS G L +M TL L +N+F
Sbjct: 580 GLSHLDLSNNRLSGELPNCWEQWKDLIVLDLANNNFSGKIKNSIGLLHQMQTLHLCNNSF 639

Query: 509 SGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHL 568
           +G LPS LKN   LR++ L +N +SG I AW+G SL +L+VL+LRSN F G IP  LC L
Sbjct: 640 TGALPSSLKNCRALRLIDLGKNKLSGKITAWMGGSLSDLIVLNLRSNEFNGSIPSSLCQL 699

Query: 569 ADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIV 628
             IQ+LDLS NN+SG IPKC  N TAM Q+ S        SY      + +P H + D  
Sbjct: 700 KQIQMLDLSSNNLSGKIPKCLKNLTAMAQKGSP-----VLSYETIYNLS-IPYH-YVDST 752

Query: 629 LLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKI 688
           L+ WKG E EYK TL  +KS+D S N+L GE+P E+ DLV L+ LNLSRNNL G I   I
Sbjct: 753 LVQWKGKEQEYKKTLRFIKSIDFSRNQLIGEIPIEVTDLVELVSLNLSRNNLIGSIPTTI 812

Query: 689 GQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGKIPTGTQLQSFNASVYDG 748
           GQL+ LD LDLS+NQ +G IP +LSQ+  LSV+DLS+N LSGKIP GTQLQSF+AS Y+G
Sbjct: 813 GQLKLLDVLDLSQNQLNGRIPDTLSQIADLSVLDLSNNTLSGKIPLGTQLQSFDASTYEG 872

Query: 749 NPELCGLPLPSKCWDEESAPGPAITKGRDDADTSED-EDQFITLGFFVTLILGFIVGFWG 807
           NP LCG PL  +C  E+   G + T G   +   ED +D    + F+  ++LGFI+GFWG
Sbjct: 873 NPGLCGPPLLIRC-PEDELGGVSFTSGL--SSKKEDIQDDANNIWFYGNIVLGFIIGFWG 929

Query: 808 VCGTLLLNNSWKHCFYNFLTVTKDWLYVTAVVNIGKIQQKMR 849
           VCGTLL N+SW++ ++  L+  KDWLY+T +VN+ +I++ ++
Sbjct: 930 VCGTLLFNSSWRYAYFQLLSKIKDWLYMTTIVNMNRIRRSLQ 971

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225470187|ref|XP_002268274.1| PREDICTED: receptor-like protein kinase 5-like [Vitis vinifera]

 Score =  551 bits (1420), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 342/901 (37%), Positives = 484/901 (53%), Gaps = 130/901 (14%)

Query: 30  SSSIRCIEEERKALLKFKQGLVDEFGFLSSWGSEGEKKDCCNWRGVRCSNQTGHVKVLDL 89
           ++++ C E+E++ALL FK  L+D    LSSW     K+DCC WRGV CSN T  V  L+L
Sbjct: 2   ANNLVCNEKEKQALLSFKHALLDPANQLSSWSI---KEDCCGWRGVHCSNVTARVLKLEL 58

Query: 90  HGTGRVKVLDIQTRVMSGNASLRGTLNPALLKLHYLRHLDLSFNNFSGSQIPMFIGSLSK 149
                               +L G ++PALLKL +L HLDLS N+F GS IP F+GS+  
Sbjct: 59  -----------------AEMNLGGEISPALLKLEFLDHLDLSSNDFKGSPIPSFLGSMGS 101

Query: 150 LEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAGNLDWISQLFSLRYLDLSSCNL 209
           L YL+L  A F+G +P  LGNLS L++L LGYN  L   NL WIS L  L+YL + S +L
Sbjct: 102 LRYLNLNDARFAGLVPHQLGNLSTLRHLDLGYNSGLYVENLGWISHLAFLKYLSMDSVDL 161

Query: 210 SKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIY 269
            +   WL+ V   PSL  L+L +C L    T    + +  S   L  L LS N +   + 
Sbjct: 162 HREVHWLESVSMFPSLSELHLSECKLDSNMTSSLGYDNFTS---LTFLDLSENKINQEMP 218

Query: 270 PWLFNVSS--------------------------------------IPDAPGPMISLRTL 291
            WLFN+SS                                      IP + G + SLR L
Sbjct: 219 NWLFNLSSLAFLSLSENQFKGQIPESLGHFKYLEYLDLSFNSFHGPIPTSIGNLSSLREL 278

Query: 292 TLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYL-------------- 337
            L  N L+G +P     +  L  L+L  +S+ G ISE  F+  S L              
Sbjct: 279 NLYYNRLNGTLPTSMGRLSNLMALALGYDSMTGAISEAHFTTLSKLETVQISETSFFFNV 338

Query: 338 ------------------KMGPHFPKWLQTQKHFSVLDISSAGISDSIPDWFSDTSHKLA 379
                             K+GP FP WLQTQK  S LD S +GI D+ P+WF   +  + 
Sbjct: 339 KSNWTPPFQLQFLLISSCKIGPKFPAWLQTQKSLSYLDFSRSGIEDTAPNWFWKFASYID 398

Query: 380 DLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSLPSNAFYIDLSKNKFSGPI 439
            ++ S+N+++G  P       +L +  ID+SSN   G  P L  N   ++++ N FSGPI
Sbjct: 399 QIHLSNNRISGDLPQ-----VVLNNTIIDLSSNCFSGRLPRLSPNVVVLNIANNSFSGPI 453

Query: 440 S-FLCS-FSGQN-LVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQ 496
           S F+C   +G + L  LD+S+N LSG++ DCW+ +  L  +N+ +NN SGKIPNS G L 
Sbjct: 454 SPFMCQKMNGTSKLEVLDISTNALSGEISDCWMHWQSLIHINMGSNNLSGKIPNSMGSLV 513

Query: 497 KMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNR 556
            +  LSLH+N+F G++PS L+N   L ++ L +N  SG IP WI E    L+V+ LRSN+
Sbjct: 514 GLKALSLHNNSFYGDVPSSLENCKVLGLINLSDNKFSGIIPRWIVERT-TLMVIHLRSNK 572

Query: 557 FYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQ-------ERSYNSSAITFS 609
           F G IP Q+C L+ + +LD + NN+SG IPKC NNF+AM +       +  Y++  + + 
Sbjct: 573 FNGIIPPQICQLSSLIVLDFADNNLSGEIPKCLNNFSAMAEGPIRGQYDIWYDALEVKYD 632

Query: 610 YAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVG 669
           Y             + + ++L  KG E EYK  L  V+++DLSSN L G +P EI  L G
Sbjct: 633 YES-----------YMESLVLDIKGRESEYKEILKYVRAIDLSSNNLSGSIPVEIFSLSG 681

Query: 670 LIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLS 729
           L  LNLS N+L G I+ KIG ++ L+ LDLSRN+ SG IP S++ +  LS +++S+NN S
Sbjct: 682 LQFLNLSCNHLRGMISAKIGGMEYLESLDLSRNRLSGEIPQSIANLTFLSYLNVSYNNFS 741

Query: 730 GKIPTGTQLQSFNASVYDGNPELCGLPLPSKCWDEESAPGPAITKGRDDADTSEDEDQFI 789
           G+IP+ TQLQS +   + GN ELCG PL   C  +E            D +T E+  +  
Sbjct: 742 GRIPSSTQLQSLDPLSFFGNAELCGAPLTKNCTKDEEP---------QDTNTDEESREHP 792

Query: 790 TLG-FFVTLILGFIVGFWGVCGTLLLNNSWKHCFYNFLTVTKDWLYVTAVVNIGKIQQKM 848
            +  F++ +  GF+VGFWGVCG L    +W+H ++  L   KD +YV   + +  +Q  +
Sbjct: 793 EIAWFYIGMGTGFVVGFWGVCGALFFKRAWRHAYFRVLDDMKDRVYVVIALRLKWLQNNL 852

Query: 849 R 849
           R
Sbjct: 853 R 853

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	850
TAIR|locus:2825384	847	RLP12 "AT1G71400" [Arabidopsis	0.896	0.899	0.297	3.7e-71
TAIR|locus:2137296	811	RLP46 "receptor like protein 4	0.864	0.906	0.302	2.6e-70
TAIR|locus:2119430	741	RLP47 "receptor like protein 4	0.798	0.916	0.327	4.3e-70
TAIR|locus:2094603	835	RLP37 "receptor like protein 3	0.892	0.908	0.299	2.4e-69
TAIR|locus:2046585	808	RLP27 "receptor like protein 2	0.776	0.816	0.319	1.7e-68
TAIR|locus:2087253	884	RLP39 "AT3G24900" [Arabidopsis	0.767	0.737	0.316	1.5e-67
TAIR|locus:2129246	891	RLP50 "receptor like protein 5	0.744	0.710	0.320	6.5e-67
TAIR|locus:2046515	864	RLP24 "receptor like protein 2	0.775	0.762	0.309	6.5e-67
TAIR|locus:2086974	881	RLP41 "AT3G25010" [Arabidopsis	0.774	0.746	0.308	1.7e-66
TAIR|locus:2037313	1000	RLP13 "AT1G74170" [Arabidopsis	0.864	0.735	0.291	2.5e-66

TAIR|locus:2825384 RLP12 "AT1G71400" [Arabidopsis thaliana (taxid:3702)]

 Score = 720 (258.5 bits), Expect = 3.7e-71, P = 3.7e-71
 Identities = 251/843 (29%), Positives = 396/843 (46%)

Query:     8 LFQYRVLFSAIILLHLEPKTADSSSIRCIEEERKALLKFKQGL-VD-EFGFLSSW-GSEG 64
             +F  R++    +L+H     A SS   C +++R ALL+F+    ++  +  ++ W G   
Sbjct:    10 VFSSRIIIFLSLLVH---SLASSSPHFCRDDQRDALLEFRGEFPINASWHIMNQWRGPWN 66

Query:    65 EKKDCCNWRGVRCSNQTGHVKVLDLHGTGRVKVLDIQTRVMS---------GNASLRGTL 115
             +  DCC W GV C++++G V  LD+  T     L   + +            N +L G +
Sbjct:    67 KSTDCCLWNGVTCNDKSGQVISLDIPNTFLNNYLKTNSSLFKLQYLRHLDLTNCNLYGEI 126

Query:   116 NPAXXXXXXXXXXXXSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQ 175
               +             FN F G +IP  IG+L++L +L L     +G IP  LGNLSRL 
Sbjct:   127 PSSLGNLSHLTLVNLYFNKFVG-EIPASIGNLNQLRHLILANNVLTGEIPSSLGNLSRLV 185

Query:   176 YLSLGYNKLLRAGNL-DWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCD 234
              L L  N+L+  G + D I  L  LR L L+S NL         +  + +L  L L    
Sbjct:   186 NLELFSNRLV--GKIPDSIGDLKQLRNLSLASNNLIGEIP--SSLGNLSNLVHLVLTHNQ 241

Query:   235 L--QLQPTIH-----RSFSHLNSSPSLETLGLSYNNLTA-SIYPWLFN--VSSIPDAPGP 284
             L  ++  +I      R  S  N+S S   + +S+ NLT  SI+    N   S+ P     
Sbjct:   242 LVGEVPASIGNLIELRVMSFENNSLS-GNIPISFANLTKLSIFVLSSNNFTSTFPFDMSI 300

Query:   285 MISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKM----- 339
               +L    +S N   G  PK    +  LE + L+ N   G I   F +  S  K+     
Sbjct:   301 FHNLEYFDVSYNSFSGPFPKSLLLIPSLESIYLQENQFTGPIE--FANTSSSTKLQDLIL 358

Query:   340 ------GPHFPKWLQTQKHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFP 393
                   GP  P+ +    +   LDIS    + +IP   S   + L  L+ S N + G  P
Sbjct:   359 GRNRLHGP-IPESISRLLNLEELDISHNNFTGAIPPTISKLVN-LLHLDLSKNNLEGEVP 416

Query:   394 NYISSMFILESPGIDISSNHLEGPSPSLPSNAFY--IDLSKNKFSGPISFL-CSFSGQNL 450
                + ++ L +  + +S N       +    A    +DL+ N F GPI ++ C  S  +L
Sbjct:   417 ---ACLWRLNT--MVLSHNSFSSFENTSQEEALIEELDLNSNSFQGPIPYMICKLS--SL 469

Query:   451 VYLDLSSNLLSGKLPDCWLQFN-MLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFS 509
              +LDLS+NL SG +P C   F+  ++ LNL +NNFSG +P+      ++++L + HN   
Sbjct:   470 GFLDLSNNLFSGSIPSCIRNFSGSIKELNLGDNNFSGTLPDIFSKATELVSLDVSHNQLE 529

Query:   510 GELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLA 569
             G+ P  L N   L +V +E N I    P+W+ ESL +L VL+LRSN+FYG +  +   + 
Sbjct:   530 GKFPKSLINCKALELVNVESNKIKDIFPSWL-ESLPSLHVLNLRSNKFYGPLYHRHASIG 588

Query:   570 --DIQILDLSLNNISGNIPKC-FNNF---TAMTQERSYNSSAITFSYAVPSRTTMLPVHI 623
                ++I+D+S NN SG +P   F+N+   T +T+E     +   + YA            
Sbjct:   589 FQSLRIIDISHNNFSGTLPPYYFSNWKDMTTLTEEMDQYMTEF-WRYA----------DS 637

Query:   624 FFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGY 683
             ++  + +  KG +  ++      +++D S NK+ G +PE +  L  L  LNLS N  T  
Sbjct:   638 YYHEMEMVNKGVDMSFERIRRDFRAIDFSGNKINGNIPESLGYLKELRVLNLSGNAFTSV 697

Query:   684 ITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGKIPTGTQLQSFNA 743
             I   +  L  L+ LD+SRN+ SG IP  L+ ++ LS M+ SHN L G +P GTQ Q    
Sbjct:   698 IPRFLANLTKLETLDISRNKLSGQIPQDLAALSFLSYMNFSHNLLQGPVPRGTQFQRQKC 757

Query:   744 SVYDGNPELCGLPLPSKCWDEESAPGPAITKGRDDADTSEDEDQFIT--LGFFVTLILGF 801
             S +  NP L GL     C D   A  P      D ++  E+   ++   + +   ++ G 
Sbjct:   758 SSFLDNPGLYGLE--DICRDT-GALNPTSQLPEDLSEAEENMFNWVAAAIAYGPGVLCGL 814

Query:   802 IVG 804
             ++G
Sbjct:   815 VIG 817

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2137296 RLP46 "receptor like protein 46" [Arabidopsis thaliana (taxid:3702)]

 Score = 712 (255.7 bits), Expect = 2.6e-70, P = 2.6e-70
 Identities = 247/816 (30%), Positives = 385/816 (47%)

Query:    32 SIRCIEEERKALLKFKQGLV----DEFGFLSSWGSEGEKKDCCNWRGVRCSNQTGHVKVL 87
             S  C +++R++LL+FK  L+    D +      G+     DCC W  V C+  +   +V+
Sbjct:    21 SFSCPQDQRQSLLEFKNLLIHNIKDNYTAFEELGTWRPNSDCCKWLRVTCNASSPSKEVI 80

Query:    88 DLH-----GTGRVK------VLDIQTRV---MSGNASLRGTL-NPAXXXXXXXXXXXXSF 132
             DL+       G V       +L I + V   +S N +++G +   A              
Sbjct:    81 DLNLFLLIPPGLVSSSILRPILRINSLVGLDVSFN-NIQGEIPGYAFVNLTSLISLDMCC 139

Query:   133 NNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAGNLDW 192
             N F+GS IP  + SL+ L+ LDL      G +   +  L  LQ L L  N L+       
Sbjct:   140 NRFNGS-IPHELFSLTNLQRLDLSRNVIGGTLSGDIKELKNLQELILDEN-LIGGAIPSE 197

Query:   193 ISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSP 252
             I  L  L  L L     + S      V ++  LKT+     DLQ      +    + +  
Sbjct:   198 IGSLVELLTLTLRQNMFNSSIP--SSVSRLTKLKTI-----DLQNNFLSSKIPDDIGNLV 250

Query:   253 SLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNE-LDGEIPK-FFQNMF 310
             +L TL LS N L+  I P     SSI +    + +L TL L +N  L GEIP  +   + 
Sbjct:   251 NLSTLSLSMNKLSGGI-P-----SSIHN----LKNLETLQLENNNGLSGEIPAAWLFGLQ 300

Query:   311 KLEGLSLRGNS-LE----GVISEHF-FSNFSYLKMG--PHFPKWLQTQKHFSVLDISSAG 362
             KL+ L L GN+ L+    G +   F  ++ S    G   + P WL+ Q     LD+S   
Sbjct:   301 KLKVLRLEGNNKLQWNNNGYVFPQFKLTHLSLRSCGLEGNIPDWLKNQTALVYLDLSINR 360

Query:   363 ISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGID---ISSNHLEGPSP 419
             +    P W +D   K+ ++  S N++TG  P    ++F  + P +    +S N+  G  P
Sbjct:   361 LEGRFPKWLADL--KIRNITLSDNRLTGSLP---PNLF--QRPSLYYLVLSRNNFSGQIP 413

Query:   420 SL--PSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRIL 477
                  S    + LS+N FSG +    +     L  LDLS N LSG+ P  +   + L  L
Sbjct:   414 DTIGESQVMVLMLSENNFSGSVPKSIT-KIPFLKLLDLSKNRLSGEFPR-FRPESYLEWL 471

Query:   478 NLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIP 537
             ++++N FSG +P   G    ML +S   NNFSGE P   +N ++L  + L +N ISG + 
Sbjct:   472 DISSNEFSGDVPAYFGGSTSMLLMS--QNNFSGEFPQNFRNLSYLIRLDLHDNKISGTVA 529

Query:   538 AWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQ 597
             + I +   ++ VL LR+N   G IP  + +L  +++LDLS NN+ G +P    N T M  
Sbjct:   530 SLISQLSSSVEVLSLRNNSLKGSIPEGISNLTSLKVLDLSENNLDGYLPSSLGNLTCMI- 588

Query:   598 ERSYNSSAITF-----SYA-VPSRTTMLPVHI--FFDIVLLTWKGSEYE-YKNTLGLVKS 648
              +S   SA+T      SY  +P+   ++ +     F +V+  WK S+   +     L   
Sbjct:   589 -KSPEPSAMTIRPYFSSYTDIPNIERLIEIESEDIFSLVV-NWKNSKQVLFDRNFYLYTL 646

Query:   649 VDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGI 708
             +DLS NKL GE+P  + +L  L  LNLS N  +G I    G L+ ++ LDLS N  +G I
Sbjct:   647 LDLSKNKLHGEIPTSLGNLKSLKVLNLSNNEFSGLIPQSFGDLEKVESLDLSHNNLTGEI 706

Query:   709 PSSLSQVNRLSVMDLSHNNLSGKIPTGTQLQSFN-ASVYDGNPELCGLPLPSKCWDEESA 767
             P +LS+++ L+ +DL +N L G+IP   QL   N  ++Y  N  +CG+ +   C+  ++ 
Sbjct:   707 PKTLSKLSELNTLDLRNNKLKGRIPESPQLDRLNNPNIYANNSGICGMQIQVPCFPTQTK 766

Query:   768 PGPAITKGRDDADTSEDEDQFITLGFFVTLILGFIV 803
               PA  K  ++ D  E+E  F      +    GF++
Sbjct:   767 Q-PAEEK--EEEDKEEEETIFSWNAAAIGCSCGFLI 799

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2119430 RLP47 "receptor like protein 47" [Arabidopsis thaliana (taxid:3702)]

 Score = 710 (255.0 bits), Expect = 4.3e-70, P = 4.3e-70
 Identities = 241/736 (32%), Positives = 354/736 (48%)

Query:    92 TGRVKVLDIQTRVMSGNASLRGTLNPAXXXXXXXXXXXXSFNNFSGSQIPMFIGSLSKLE 151
             TG V  LD+Q   ++G   LR   N +              N+ SG  +P  IG+L +L+
Sbjct:    23 TGVVVELDLQYSHLNG--PLRS--NSSLFRLQHLQKLVLGSNHLSGI-LPDSIGNLKRLK 77

Query:   152 YLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAG--NLDWISQLFSLRYLDLSSCNL 209
              L L   +  G IP  LGNLS L +L L YN     G  ++  +++L  +  L LSS   
Sbjct:    78 VLVLVNCNLFGKIPSSLGNLSYLTHLDLSYNDFTSEGPDSMGNLNRLTDM-LLKLSSVTW 136

Query:   210 SKSTDWLQEVDKIPS-LKTLY-LEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTAS 267
                 D  Q    +PS + +L  LE  D+          S L   PSL  L L  N+ +  
Sbjct:   137 IDLGD-NQLKGMLPSNMSSLSKLEAFDISGNSFSGTIPSSLFMIPSLILLHLGRNDFSG- 194

Query:   268 IYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIP--KFFQNMFKLEGLSLRGNSLEGV 325
               P  F + +I  +P    +L+ L +  N  + +I     F  +  L  L + G +L+  
Sbjct:   195 --P--FEIGNI-SSPS---NLQLLNIGRNNFNPDIVDLSIFSPLLSLGYLDVSGINLKIS 246

Query:   326 ISEHFFSNFSYLKMGP----HFPKWLQTQKHFSVLDISSAGISDSIPDWFSDTSHKLADL 381
              +    S   YL +       FPK+L+ Q     LDIS+  I   +P+W      +L  +
Sbjct:   247 STVSLPSPIEYLGLLSCNISEFPKFLRNQTSLEYLDISANQIEGQVPEWLWSLP-ELRYV 305

Query:   382 NFSHNQMTG-RFPNYISSMFILESPGIDISSNHLEGPSPSLPSNAF-YIDLSKNKFSGPI 439
             N SHN   G   P  +      E   +DISSN  + P P LP  +  Y+  S N+FSG I
Sbjct:   306 NISHNSFNGFEGPADVIQGG-RELLVLDISSNIFQDPFPLLPVVSMNYLFSSNNRFSGEI 364

Query:   440 -SFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKM 498
                +C     NL  L LS+N  SG +P C+   + L +L+L NNN SG  P        +
Sbjct:   365 PKTICELD--NLRILVLSNNNFSGSIPRCFENLH-LYVLHLRNNNLSGIFPEEA-ISHHL 420

Query:   499 LTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFY 558
              +  + HN FSGELP  L N + +  + +E+N I+   P+W+ E L NL +L LRSN FY
Sbjct:   421 QSFDVGHNLFSGELPKSLINCSDIEFLNVEDNRINDTFPSWL-ELLPNLQILVLRSNEFY 479

Query:   559 GKI--PFQLCHLADIQILDLSLNNISGNIPK-CFNNFTAMTQERSYNSSAITFSYAVPSR 615
             G I  P      + ++I D+S N  +G +P   F  ++ M+     +   I   Y V   
Sbjct:   480 GPIFSPGDSLSFSRLRIFDISENRFTGVLPSDYFVGWSVMSSVVDIDGRII--QYTV--- 534

Query:   616 TTMLPVHIFFDIVLLTWKGSEYEYKNT-LGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLN 674
              T +    +   V L  KG + E   +   + K++D+S N+L G++PE I  L  +I L+
Sbjct:   535 -TGIDRDFYHKSVALINKGLKMELVGSGFTIYKTIDVSGNRLEGDIPESIGLLKEVIVLS 593

Query:   675 LSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGKIPT 734
             +S N  TG+I P +  L +L  LDLS+N+ SG IP  L ++  L  M+ SHN L G IP 
Sbjct:   594 MSNNAFTGHIPPSLSNLSNLQSLDLSQNRLSGSIPGELGKLTFLEWMNFSHNRLEGPIPE 653

Query:   735 GTQLQSFNASVYDGNPELCGLPLPSKCWDEESAPGPAITKGRDDADTSEDEDQFITLGFF 794
              TQ+Q+ ++S +  NP LCG PL  KC  EE A     TK   D D  E+EDQ  +   +
Sbjct:   654 TTQIQTQDSSSFTENPGLCGAPLLKKCGGEEEA-----TKQEQDED-KEEEDQVFS---W 704

Query:   795 VTLILGFIVGFWGVCG 810
             +   +G++ G   VCG
Sbjct:   705 IAAAIGYVPGV--VCG 718

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2094603 RLP37 "receptor like protein 37" [Arabidopsis thaliana (taxid:3702)]

 Score = 703 (252.5 bits), Expect = 2.4e-69, P = 2.4e-69
 Identities = 251/837 (29%), Positives = 381/837 (45%)

Query:    20 LLHLEPKTADSSSIRCIEEERKALLKFKQGL-VDEFGF----LSSWGSEGEKKDCCNWRG 74
             LL L    A  +   C  ++R ALL+ K+   +   G       SW    +  DCC+W G
Sbjct:    22 LLSLPNTFASPTRSLCRSDQRDALLELKKEFPIHSNGSHHVTTLSWN---KTVDCCSWEG 78

Query:    75 VRCSNQTGHVKVLDL----------HGTGRVKVLDIQTRVMSGNASLRGTLNPAXXXXXX 124
             V C    G V  L+L            +   K+  ++   +S + +L+G +  +      
Sbjct:    79 VTCDATLGEVISLNLVSYIANTSLKSSSSLFKLRHLRHLELS-HCNLQGEIPSSIGNLSH 137

Query:   125 XXXXXXSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKL 184
                   SFN   G + P+ IG+L++LEY+DL+  +  G IP    NL++L  L L  N+ 
Sbjct:   138 LTYLDLSFNQLVG-EFPVSIGNLNQLEYIDLWVNALGGNIPTSFANLTKLSELHLRQNQF 196

Query:   185 LRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRS 244
                G++  +S L SL  +DLSS N   ST    ++ ++ +L+  ++ +      P    S
Sbjct:   197 T-GGDIV-LSNLTSLSIVDLSS-NYFNSTI-SADLSQLHNLERFWVSENSF-FGP--FPS 249

Query:   245 FSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIPK 304
             F  L   PSL  + LS N     I     N  +   +      L  L +S N LDG IPK
Sbjct:   250 F--LLMIPSLVDICLSENQFEGPI-----NFGNTTSSS----KLTELDVSYNNLDGLIPK 298

Query:   305 FFQNMFKLEGLSLRGNSLEGVISEHFFS--NFS--YLK---MGPHFPKWLQTQKHFSVLD 357
                 +  LE L L  N+  G +        N    YL     G   P  +    +   LD
Sbjct:   299 SISTLVSLEHLELSHNNFRGQVPSSISKLVNLDGLYLSHNNFGGQVPSSIFKLVNLEHLD 358

Query:   358 ISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGP 417
             +S       +P   S   + L+ L+ S+N+  G  P  I     L+S  +  +S +  G 
Sbjct:   359 LSHNDFGGRVPSSISKLVN-LSSLDLSYNKFEGHVPQCIWRSSKLDSVDLSYNSFNSFGR 417

Query:   418 SPSLPSNAFYID--LSKNKFSGPI-SFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNML 474
                L   +   D  LS N   GPI  ++C+F  +   +LD S+N L+G +P C       
Sbjct:   418 ILELGDESLERDWDLSSNSLQGPIPQWICNF--RFFSFLDFSNNHLNGSIPQCLKNSTDF 475

Query:   475 RILNLANNNFSGKIPNSC--GYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSI 532
              +LNL NN+ SG +P+ C  G +   L +SL  NN  G+LP    N   +  + +  N I
Sbjct:   476 YMLNLRNNSLSGFMPDFCMDGSMLGSLDVSL--NNLVGKLPESFINCEWMEYLNVRGNKI 533

Query:   533 SGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLA--DIQILDLSLNNISGNIPK-CF 589
                 P W+G SL  L VL LRSN FYG +     +L    ++I+D+S NN  G++P+  F
Sbjct:   534 KDTFPVWLG-SLQYLTVLVLRSNTFYGPVYKASAYLGFPSMRIMDISNNNFVGSLPQDYF 592

Query:   590 NNFTAMTQERSYNSSAITFSY----AVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGL 645
              N+T M+    +    +T  Y    A+P    M   +   D + L +KG + +++   G 
Sbjct:   593 ANWTEMSSV--WQRPMLTLDYKRNIAIPGSNYMGDDN-HQDSIDLVYKGVDTDFEQIFGG 649

Query:   646 VKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFS 705
              K +D S N+  G +P  I  L  L+ LNLS N  TG I P +  +  L+ LDLSRN  S
Sbjct:   650 FKVIDFSGNRFSGHIPRSIGLLSELLHLNLSGNAFTGNIPPSLASITKLETLDLSRNNLS 709

Query:   706 GGIPSSLSQVNRLSVMDLSHNNLSGKIPTGTQLQSFNASVYDGNPELCGLPLPSKCWDEE 765
             G IP  L +++ LS ++ SHN+L G +P  TQ  S N S + GNP L GL     C  E 
Sbjct:   710 GEIPRGLGKLSFLSNINFSHNHLEGLVPQSTQFGSQNCSSFMGNPRLYGLD--QIC-GET 766

Query:   766 SAPGPAITKGRDDADTSEDEDQFITLGFFVTLILGFIVGFWGVCGTLL--LNNSWKH 820
               P P  T    +    E E+  +    ++   + F  G +  CG ++  +  S+KH
Sbjct:   767 HVPIP--TSLHPEEPLLEPEETVLN---WIAAAIAFGPGVF--CGLVIGHIFTSYKH 816

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2046585 RLP27 "receptor like protein 27" [Arabidopsis thaliana (taxid:3702)]

 Score = 695 (249.7 bits), Expect = 1.7e-68, P = 1.7e-68
 Identities = 233/729 (31%), Positives = 355/729 (48%)

Query:   100 IQTRVMSGNASLRGTLNP--AXXXXXXXXXXXXSFNNFSGSQIPMFIGSLSKLEYLDLFA 157
             + T++   +  L G++ P  +            S NNF+ + +P   G+L++LE L L +
Sbjct:    72 VVTKLQLPSGCLHGSMKPNSSLFGLQHLRYLNLSNNNFTSASLPSGFGNLNRLEVLYLSS 131

Query:   158 ASFSGPIPPLLGNLSRLQYLSLGYNKLLRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQ 217
               F G +P    NLS+L  L L +N+L   G+  ++  L  L  L LS  + S +     
Sbjct:   132 NGFLGQVPSSFSNLSQLNILDLSHNEL--TGSFPFVQNLTKLSILVLSYNHFSGT----- 184

Query:   218 EVDKIPS-LKTL-YLEQCDLQLQPTIHRSFSHLNSSPS--LETLGLSYNNLTASIYPWLF 273
                 IPS L TL +L   DL+ +  +  S    NSS S  LE + L  N+    I   L 
Sbjct:   185 ----IPSSLLTLPFLSSLDLR-ENYLTGSIEAPNSSTSSRLEFMYLGNNHFEGQI---LE 236

Query:   274 NVSSIPDAPGPMISLRTLTLSDNELDGEIP-KFFQNMFKLEGLSLRGNSL--EGVISEHF 330
              +S +       I+L+ L LS  +    I    F +   L  L L GNSL    + S+  
Sbjct:   237 PISKL-------INLKHLDLSFLKTSYPIDLNLFSSFKSLVRLVLSGNSLLATSITSDSK 289

Query:   331 F----SNFSYLKMGP-HFPKWLQTQKHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSH 385
                   N   L  G   FP  L+       +D+S+  I   +P+WF +   +L  +N  +
Sbjct:   290 IPLNLENLVLLSCGLIEFPTILKNLTKLEHIDLSNNKIKGKVPEWFWNLP-RLRRVNLFN 348

Query:   386 NQMT---GRFPNYISSMFILESPGIDISSNHLEGPSPSLPSNAFYIDLSKNKFSGPISF- 441
             N  T   G     ++S   L    +D++ NH  GP P  P +   +    N F+G I   
Sbjct:   349 NLFTDLEGSEEVLVNSSVRL----LDLAYNHFRGPFPKPPLSINLLSAWNNSFTGNIPLE 404

Query:   442 LCSFSGQNLVYLDLSSNLLSGKLPDCWLQFN-MLRILNLANNNFSGKIPN--SCGYLQKM 498
              C+ S  +L  LDLS N L+G +P C   F   L ++NL  NN  G +P+  S G L + 
Sbjct:   405 TCNRS--SLAILDLSYNNLTGPIPRCLSDFQESLIVVNLRKNNLEGSLPDIFSDGALLR- 461

Query:   499 LTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFY 558
              TL + +N  +G+LP  L N + LR V+++ N I    P W+ ++L +L  L LRSN+F+
Sbjct:   462 -TLDVGYNQLTGKLPRSLLNCSMLRFVSVDHNKIKDTFPFWL-KALPDLQALTLRSNKFH 519

Query:   559 GKI-PFQLCHLA--DIQILDLSLNNISGNIP-KCFNNFTAMTQERSYNSSAITFSYAVPS 614
             G I P     LA   ++IL++S NN +G++P   F N+ A + + + +       Y  P 
Sbjct:   520 GPISPPDRGPLAFPKLRILEISDNNFTGSLPPNYFVNWEASSLQMNEDGRIYMGDYNNP- 578

Query:   615 RTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLN 674
                    +I+ D V L +KG   E    L    ++D S NKL G++PE I  L  LI LN
Sbjct:   579 ------YYIYEDTVDLQYKGLFMEQGKVLTSYATIDFSGNKLEGQIPESIGLLKALIALN 632

Query:   675 LSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGKIPT 734
             LS N  TG+I   +  +  L+ LDLSRNQ SG IP+ L  ++ L+ + ++HN L G+IP 
Sbjct:   633 LSNNAFTGHIPLSLANVTELESLDLSRNQLSGTIPNGLKTLSFLAYISVAHNQLIGEIPQ 692

Query:   735 GTQLQSFNASVYDGNPELCGLPLPSKCWDEESAPGPAITKGRDDADTSEDEDQFITLGFF 794
             GTQ+   + S ++GN  LCGLPL   C+    AP P      +D D      + + +G++
Sbjct:   693 GTQITGQSKSSFEGNAGLCGLPLQGSCF----AP-PTPQPKEEDEDEEVLNWKAVVIGYW 747

Query:   795 VTLILGFIV 803
               L+LG I+
Sbjct:   748 PGLLLGLIM 756

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2087253 RLP39 "AT3G24900" [Arabidopsis thaliana (taxid:3702)]

 Score = 686 (246.5 bits), Expect = 1.5e-67, P = 1.5e-67
 Identities = 227/718 (31%), Positives = 352/718 (49%)

Query:   113 GTLNPAXXXXXXXXXXXXSF--NNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGN 170
             GTLNP                 NNF+ S +P   G+L+KLE LD+ + SF G +PP + N
Sbjct:   185 GTLNPNSSLFELHNLAYLDLGSNNFTSSSLPYEFGNLNKLELLDVSSNSFFGQVPPTISN 244

Query:   171 LSRLQYLSLGYNKLLRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYL 230
             L++L  L L  N     G+L  +  L  L  L LS  + S +      +  +P L   YL
Sbjct:   245 LTQLTELYLPLNDF--TGSLPLVQNLTKLSILHLSDNHFSGTIP--SSLFTMPFLS--YL 298

Query:   231 EQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRT 290
             +     L  +I    S L+S   LE L L  N+    I      +  I      +I+L+ 
Sbjct:   299 DLGGNNLSGSIEVPNSSLSSR--LENLNLGENHFEGKI------IEPI----SKLINLKE 346

Query:   291 LTLSDNELDGEIP-KFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLK------MGPH- 342
             L LS       I  K F ++  L  L L G    G IS+   S  SY+       +  H 
Sbjct:   347 LHLSFLNTSYPINLKLFSSLKYLLLLDLSG----GWISQASLSLDSYIPSTLEALLLKHC 402

Query:   343 ----FPKWLQTQKHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISS 398
                 FP  L+T  +   + +S+  IS  IP+W      +L+ +    N  TG F    S 
Sbjct:   403 NISVFPNILKTLPNLEFIALSTNKISGKIPEWLWSLP-RLSSVFIEENLFTG-FEGS-SE 459

Query:   399 MFILESPGI-DISSNHLEGPSPSLPSNAFYIDLSKNKFSGPISF-LCSFSGQNLVYLDLS 456
             + +  S  I ++ SN+LEG  P LP +  Y     N++ G I   +CS   ++LV+LDLS
Sbjct:   460 ILVNSSVRILNLLSNNLEGALPHLPLSVNYFSARNNRYGGDIPLSICS--RRSLVFLDLS 517

Query:   457 SNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLL 516
              N  +G +P C    N L ILNL  NN  G IP++      + +L + +N  +G+LP  L
Sbjct:   518 YNNFTGPIPPC--PSNFL-ILNLRKNNLEGSIPDTYYADAPLRSLDVGYNRLTGKLPRSL 574

Query:   517 KNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKI--PFQ-LCHLADIQI 573
              N + L+ ++++ N I    P  + ++L  L VL L SN FYG +  P Q      +++I
Sbjct:   575 LNCSALQFLSVDHNGIKDTFPFSL-KALPKLQVLILHSNNFYGPLSPPNQGSLGFPELRI 633

Query:   574 LDLSLNNISGNIPK-CFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIF--FDIVLL 630
             L+++ N  +G++P   F N+ A +   + +       Y V ++  +   + F   + + L
Sbjct:   634 LEIAGNKFTGSLPPDFFENWKASSLTMNEDQGL----YMVYNKV-VYGTYYFTSLEAIDL 688

Query:   631 TWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQ 690
              +KG   E    L    ++D S N+L GE+PE I  L  LI LNLS N  TG+I   +  
Sbjct:   689 QYKGLSMEQNRVLSSSATIDFSGNRLEGEIPESIGLLKALIALNLSNNAFTGHIPLSLAN 748

Query:   691 LQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGKIPTGTQLQSFNASVYDGNP 750
             L+ ++ LDLS NQ SG IP+ +  ++ L+ M++SHN L+G+IP GTQ+     S ++GN 
Sbjct:   749 LKKIESLDLSSNQLSGTIPNGIGTLSFLAYMNVSHNQLNGEIPQGTQITGQPKSSFEGNA 808

Query:   751 ELCGLPLPSKCWDEESAPGPAITKGRDDADTSEDEDQFIT-----LGFFVTLILGFIV 803
              LCGLPL   C+   +AP PA    +++ +  E+E+Q +      +G+ V ++LG  +
Sbjct:   809 GLCGLPLQESCFGT-NAP-PA-QHPKEEEEEEEEEEQVLNWKGVGIGYGVGVLLGLAI 863

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2129246 RLP50 "receptor like protein 50" [Arabidopsis thaliana (taxid:3702)]

 Score = 680 (244.4 bits), Expect = 6.5e-67, P = 6.5e-67
 Identities = 225/701 (32%), Positives = 347/701 (49%)

Query:   131 SFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAG-- 188
             S+N F+G ++P  +G+L  L  L+L   +F G IP  LG+LS L  L +  N+    G  
Sbjct:   210 SWNYFTG-ELPDSMGNLKSLRVLNLHRCNFFGKIPTSLGSLSNLTDLDISKNEFTSEGPD 268

Query:   189 NLDWISQL--FSLRYLDLSSC-NLSKSTDWLQEVDKIPS-LKTLY-LEQCDLQLQPTIHR 243
             ++  +++L  F L  L+LSS  N+  S++  + +  +PS + +L  LE  D+        
Sbjct:   269 SMSSLNRLTDFQLMLLNLSSLTNVDLSSNQFKAM--LPSNMSSLSKLEAFDISGNSFSGT 326

Query:   244 SFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIP 303
               S L   PSL  L L  N+ +  +   + N+SS    P    +L+ L + +N ++G IP
Sbjct:   327 IPSSLFMLPSLIKLDLGTNDFSGPLK--IGNISS----PS---NLQELYIGENNINGPIP 377

Query:   304 KFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLK------MGPHFPKWLQTQKHFSVLD 357
             +    +  L  LSL      G++    F     L+      +  +         H   L 
Sbjct:   378 RSILKLVGLSALSLSFWDTGGIVDFSIFLQLKSLRSLDLSGINLNISSSHHLPSHMMHLI 437

Query:   358 ISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGP 417
             +SS  IS   P  F +    L  L+ S NQ+ G+ P ++  +  L    ++I+ N   G 
Sbjct:   438 LSSCNISQ-FPK-FLENQTSLYHLDISANQIEGQVPEWLWRLPTLRY--VNIAQNAFSGE 493

Query:   418 SPSLPSNAFYIDLSKNKFSGPIS-FLCSFSGQNLVYLDLSSNLLSGKLPDCW-LQFNMLR 475
                LP+  +    S NKFSG I   +C      LV   LS+N  SG +P C+ +    L 
Sbjct:   494 LTMLPNPIYSFIASDNKFSGEIPRAVCEIG--TLV---LSNNNFSGSIPPCFEISNKTLS 548

Query:   476 ILNLANNNFSGKIPNSC--GYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSIS 533
             IL+L NN+ SG IP     GYL+   +L +  N  SG+ P  L N ++L+ + +EEN I+
Sbjct:   549 ILHLRNNSLSGVIPEESLHGYLR---SLDVGSNRLSGQFPKSLINCSYLQFLNVEENRIN 605

Query:   534 GNIPAWIGESLLNLVVLDLRSNRFYGKI--PFQLCHLADIQILDLSLNNISGNIPKCFNN 591
                P+W+ +SL NL +L LRSN F+G I  P      + ++  D+S N  SG +P  +  
Sbjct:   606 DTFPSWL-KSLPNLQLLVLRSNEFHGPIFSPGDSLSFSKLRFFDISENRFSGVLPSDY-- 662

Query:   592 FTAMTQERSYNSSAITFSYAVPSRTTMLP-VHIFFDIVLLTWKGSEYEYKNT-LGLVKSV 649
             F       S  SS +      P  T +      F   V+LT KG   E   +   + K++
Sbjct:   663 FVGW----SVMSSFVDIIDNTPGFTVVGDDQESFHKSVVLTIKGLNMELVGSGFEIYKTI 718

Query:   650 DLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIP 709
             D+S N+L G++PE I  L  LI LN+S N  TG+I P +  L +L  LDLS+N+ SG IP
Sbjct:   719 DVSGNRLEGDIPESIGILKELIVLNMSNNAFTGHIPPSLSNLSNLQSLDLSQNRLSGSIP 778

Query:   710 SSLSQVNRLSVMDLSHNNLSGKIPTGTQLQSFNASVYDGNPELCGLPLPSKCWDEESAPG 769
               L ++  L+ M+ S+N L G IP GTQ+QS N+S +  NP LCG PL  KC  EE    
Sbjct:   779 GELGELTFLARMNFSYNMLEGPIPQGTQIQSQNSSSFAENPGLCGAPLQKKCGGEEE--- 835

Query:   770 PAITKGRDDADTSEDEDQFITLGFFVTLILGFIVGFWGVCG 810
                    +D +  E++D+ ++   +V   +G++ G +  CG
Sbjct:   836 -------EDKE-KEEKDKGLS---WVAAAIGYVPGLF--CG 863

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2046515 RLP24 "receptor like protein 24" [Arabidopsis thaliana (taxid:3702)]

 Score = 680 (244.4 bits), Expect = 6.5e-67, P = 6.5e-67
 Identities = 219/708 (30%), Positives = 340/708 (48%)

Query:   113 GTLNP--AXXXXXXXXXXXXSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGN 170
             GTLNP  +            +FNN S S +P   G+L+KLE L L    FSG   P + N
Sbjct:   171 GTLNPNNSLFELHSLRYLNLAFNNISSS-LPSKFGNLNKLEVLSLSFNGFSGQCFPTISN 229

Query:   171 LSRLQYLSLGYNKLLRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYL 230
             L+R+  L L  N+L   G+   +  L  L +L LS  NL   T     +   PSL TL L
Sbjct:   230 LTRITQLYLHNNEL--TGSFPLVQNLTKLSFLGLSD-NLFSGTI-PSYLFTFPSLSTLDL 285

Query:   231 EQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRT 290
              + DL     +  S    ++S  LE + L +N+L   I   L  +S +       I+L+ 
Sbjct:   286 RENDLSGSIEVPNS----STSSKLEIMYLGFNHLEGKI---LEPISKL-------INLKR 331

Query:   291 LTLSDNELDGEIPKFFQNMFK-LEGLSLRGNSLEGV-ISEHFFSNFSY----LKM-G-PH 342
             L LS       I     +  K L  L   GNSL    +S   +   S     L + G   
Sbjct:   332 LDLSFLNTSYPIDLNLLSPLKSLSYLDFSGNSLSPASLSSSSYIPLSMESIVLSLCGIRE 391

Query:   343 FPKWLQTQKHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFIL 402
             FP  L+  ++   +DI+S  I   IP+W   T  +L+ ++ S+N   G F         L
Sbjct:   392 FPNILKHLQNLIHIDITSNQIKGKIPEWLW-TLPQLSFVDISNNSFNG-FQGSAEVFVNL 449

Query:   403 ESPGIDISSNHLEGPSPSLPSNAFYIDLSKNKFSGPISF-LCSFSGQNLVYLDLSSNLLS 461
                 + + +N+ EG  P+LP +        N F+G I   +C+ +  +L  +DLS N  +
Sbjct:   450 SVRILMLDANNFEGALPTLPLSIIGFSAIHNSFTGEIPLSICNRT--SLTMVDLSYNNFT 507

Query:   462 GKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTH 521
             G +P C   F     +NL  N+  G IP++      + +L + +N  +G+LP  L N + 
Sbjct:   508 GPIPQCLSNF---MFVNLRKNDLEGSIPDTFYTDSSLKSLDVGYNRLTGKLPRSLLNCSS 564

Query:   522 LRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKI--PFQ-LCHLADIQILDLSL 578
             LR ++++ N +    P W+ ++L NL VL LRSN+FYG I  P Q      +++I +++ 
Sbjct:   565 LRFLSVDNNRVKDTFPFWL-KALPNLRVLTLRSNKFYGPISPPHQGPLGFPELRIFEIAD 623

Query:   579 NNISGNIPKCFN-NFTAMTQERSYNSSA-ITFSYAVPSRTTMLPV-HIFFDIVLLTWKGS 635
             N  +G++P  F  N+ A    ++ +    + + Y    +    PV + + D + L +KG 
Sbjct:   624 NMFTGSLPPSFFVNWKASALTKNEDGGLYMVYEY---DKAANSPVRYTYTDTIDLQYKGL 680

Query:   636 EYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLD 695
               E +  L    ++D S N+L G++PE I  L  LI LNLS N  TG+I      L +L+
Sbjct:   681 HMEQERVLTSYAAIDFSGNRLQGQIPESIGLLKALIALNLSNNAFTGHIPLSFANLMNLE 740

Query:   696 FLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGKIPTGTQLQSFNASVYDGNPELCGL 755
              LD+S NQ SG IP+ L  ++ L  + ++HN L G+IP GTQ+     S ++GN  LCGL
Sbjct:   741 SLDMSGNQLSGTIPNGLGSLSFLVYISVAHNKLKGEIPQGTQITGQIKSSFEGNAGLCGL 800

Query:   756 PLPSKCWDEESAPGPAITKGRDDADTSEDEDQFITLGFFVTLILGFIV 803
             PL   C+D  S P P   K  D+        + + +G+   L+ G  +
Sbjct:   801 PLQETCFDS-SVP-PIQPKQEDEEKGEVINWKAVAIGYAPGLLFGLAI 846

GO:0005886 "plasma membrane" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2086974 RLP41 "AT3G25010" [Arabidopsis thaliana (taxid:3702)]

 Score = 676 (243.0 bits), Expect = 1.7e-66, P = 1.7e-66
 Identities = 219/710 (30%), Positives = 347/710 (48%)

Query:   113 GTLNPAXXXXXXXXXXXXSF--NNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGN 170
             G LNP             S   N+F+ S +P   G+L+KLE LD+ + SF G +PP + N
Sbjct:   184 GILNPNSSLFELHHLTYLSLGSNSFTSSTLPYEFGNLNKLELLDVSSNSFFGQVPPTISN 243

Query:   171 LSRLQYLSLGYNKLLRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYL 230
             L++L  L L  N     G+L  +  L  L  L L   + S +      +  +P L  L L
Sbjct:   244 LTQLTELYLPLNDF--TGSLPLVQNLTKLSILALFGNHFSGTIP--SSLFTMPFLSYLSL 299

Query:   231 EQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRT 290
             +  +L     +  S    +SS  LE+L L  N+    I   L  +S +       I+L+ 
Sbjct:   300 KGNNLNGSIEVPNS----SSSSRLESLYLGKNHFEGKI---LKPISKL-------INLKE 345

Query:   291 LTLSDNELDGEIPKFFQNMFK-LEGLSLRGN--SLEGVISEHFFS---NFSYLKMG--PH 342
             L LS       I     + FK L  L L G+  S  G+ S+ + S      Y+K      
Sbjct:   346 LDLSFLSTSYPIDLSLFSSFKSLLVLDLTGDWISQAGLSSDSYISLTLEALYMKQCNISD 405

Query:   343 FPKWLQTQKHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFIL 402
             FP  L++  +   +D+S+  +S  IP+W      +L+ +    N +TG    +  S  IL
Sbjct:   406 FPNILKSLPNLECIDVSNNRVSGKIPEWLWSLP-RLSSVFIGDNLLTG----FEGSSEIL 460

Query:   403 ESPGIDI---SSNHLEGPSPSLPSNAFYIDLSKNKFSGPISF-LCSFSGQNLVYLDLSSN 458
              +  + I    SN LEG  P LP +  Y     N+F G I   +C+ S  +L  LDL  N
Sbjct:   461 VNSSVQILVLDSNSLEGALPHLPLSIIYFSARYNRFKGDIPLSICNRS--SLDVLDLRYN 518

Query:   459 LLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKN 518
               +G +P C L  N+L  LNL  NN  G IP++      + +L + +N  +G+LP  L N
Sbjct:   519 NFTGPIPPC-LS-NLL-FLNLRKNNLEGSIPDTYFADAPLRSLDVGYNRLTGKLPRSLLN 575

Query:   519 FTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKI--PFQ-LCHLADIQILD 575
              + L+ ++++ N I    P ++ + L  L VL L SN+FYG +  P Q      +++IL+
Sbjct:   576 CSALQFLSVDHNGIEDTFPFYL-KVLPKLQVLLLSSNKFYGPLSPPNQGSLGFPELRILE 634

Query:   576 LSLNNISGNIPK-CFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHI-FFDIVLLTWK 633
             ++ N ++G++P+  F N+ A +   + +       Y V S+      ++ +   + L +K
Sbjct:   635 IAGNKLTGSLPQDFFVNWKASSLTMNEDQGL----YMVYSKVVYGIYYLSYLATIDLQYK 690

Query:   634 GSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQS 693
             G   E K  L    ++DLS N+L GE+PE I  L  LI LNLS N  TG+I   +  L  
Sbjct:   691 GLSMEQKWVLTSSATIDLSGNRLEGEIPESIGLLKALIALNLSNNAFTGHIPLSLANLVK 750

Query:   694 LDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGKIPTGTQLQSFNASVYDGNPELC 753
             ++ LDLS NQ SG IP+ L  ++ L+ +++SHN L+G+IP GTQ+     S ++GN  LC
Sbjct:   751 IESLDLSSNQLSGTIPNGLGTLSFLAYVNVSHNQLNGEIPQGTQITGQPKSSFEGNAGLC 810

Query:   754 GLPLPSKCWDEESAPGPAITKGRDDADTSEDEDQFITLGFFVTLILGFIV 803
             GLPL  +C+   + P     +  D+        + + +G+ V ++LG  +
Sbjct:   811 GLPLQQRCFGTNAPPAHQFKEEEDEEQEQVLNWEGVAIGYGVGVLLGLAI 860

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

TAIR|locus:2037313 RLP13 "AT1G74170" [Arabidopsis thaliana (taxid:3702)]

 Score = 678 (243.7 bits), Expect = 2.5e-66, P = 2.5e-66
 Identities = 235/805 (29%), Positives = 360/805 (44%)

Query:    57 LSSWGSE--G-----EKKDCCNWRGVRCSNQ--TGHVKVLDLHGTGRVKVLDIQTRVMSG 107
             LS WG+   G     E +D  N   +  S     G + V  L    ++K LD+     S 
Sbjct:   178 LSLWGNNMGGPFPAKELRDLTNVELLDLSRNRFNGSIPVRALFALRKLKALDLSDNEFSS 237

Query:   108 NASLRGTL---NPAXXXXXXXXXXXXSF-NNFSGSQIPMFIGSLSKLEYLDLFAASFSGP 163
             +  L+G      P                NN    Q P+ + SL+ L  LDL +   +G 
Sbjct:   238 SVELQGKFAKTKPLSGTCPWKNMEELKLSNNKLAGQFPLCLTSLTGLRVLDLSSNQLTGN 297

Query:   164 IPPLLGNLSRLQYLSLGYNKLLRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIP 223
             +P  L NL  L+YLSL  N      +L  ++ L  L+ L L S + S   ++        
Sbjct:   298 VPSALANLESLEYLSLFGNNFEGFFSLGLLANLSKLKVLRLDSQSNSLEVEFETSWKPKF 357

Query:   224 SLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPG 283
              L  + L  C+L+  P  H     L     L  + LS N +  +   WL   ++      
Sbjct:   358 QLVVIALRSCNLEKVP--H----FLLHQKDLHHVDLSDNQIHGNFPSWLLENNT------ 405

Query:   284 PMISLRTLTLSDNELDG-EIPKFFQNMFKLEGLSLRGNSLE----GVISEHFFS-NFSYL 337
                 L  L L +N     ++PK   N+  L     + N L     G I  H    N +Y 
Sbjct:   406 ---KLEVLLLQNNSFTSFQLPKSAHNLLFLNVSVNKFNHLFLQNFGWILPHLVCVNLAYN 462

Query:   338 KMGPHFPKWLQTQKHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGR-FPNY- 395
                 + P  L   K    LD+S       +P  F    + L  L  SHN+++G  FP   
Sbjct:   463 GFQGNLPSSLDNMKSIEFLDLSHNRFHGKLPRRFLKGCYNLTILKLSHNKLSGEVFPEAA 522

Query:   396 -ISSMFILESPGIDISSNHLEGPSPSLPSNAFYIDLSKNKFSGPISFLCSFSG--QNLVY 452
               + ++++       + N  +G   SLPS    +D+S NK +G I    S+ G  Q L  
Sbjct:   523 NFTRLWVMSMDNNLFTGNIGKG-FRSLPS-LNVLDISNNKLTGVIP---SWIGERQGLFA 577

Query:   453 LDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGEL 512
             L LS+N+L G++P      + L++L+L++N  SG IP     +     L L +NN SG +
Sbjct:   578 LQLSNNMLEGEIPTSLFNISYLQLLDLSSNRLSGDIPPHVSSIYHGAVLLLQNNNLSGVI 637

Query:   513 PSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQ 572
             P  L    ++ V+ L  N +SGN+P +I     N+ +L LR N F G+IP Q C L++IQ
Sbjct:   638 PDTL--LLNVIVLDLRNNRLSGNLPEFINTQ--NISILLLRGNNFTGQIPHQFCSLSNIQ 693

Query:   573 ILDLSLNNISGNIPKCFNN--FTAMTQERSYNSSAIT-FSYAV-PSRTTMLPVHIFFDIV 628
             +LDLS N  +G+IP C +N  F     + SY     + F  A  P     L +   F++V
Sbjct:   694 LLDLSNNKFNGSIPSCLSNTSFGLRKGDDSYRYDVPSRFGTAKDPVYFESLLMIDEFNMV 753

Query:   629 LLTWKGSEYEYKN----------TLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRN 678
               T   ++ E+             L L+  +DLS N+L GE+P E+  LV L  LNLS N
Sbjct:   754 NETNSQTKIEFATKHRYDAYMGGNLKLLFGMDLSENELSGEIPVELGGLVELEALNLSHN 813

Query:   679 NLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGKIPTGTQL 738
             NL+G I      L++++ LDLS N+  G IP  L+ +  L+V ++S+NNLSG +P G Q 
Sbjct:   814 NLSGVILESFSGLKNVESLDLSFNRLQGPIPLQLTDMISLAVFNVSYNNLSGIVPQGRQF 873

Query:   739 QSFNASVYDGNPELCGLPLPSKCWDEESAPGPAITKGRDDADTSEDEDQFITLGFFVTLI 798
              +F    Y GNP LCG  +   C      P    T    +AD S  + +     F+ + +
Sbjct:   874 NTFETQSYFGNPLLCGKSIDISCASNNFHP----TDNGVEADESTVDME----SFYWSFV 925

Query:   799 LGFIVGFWGVCGTLLLNNSWKHCFY 823
               ++    G+  +L  ++ W   ++
Sbjct:   926 AAYVTILLGILASLSFDSPWSRAWF 950

GO:0007165 "signal transduction" evidence=IC

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_scaffold_208000019 hypothetical protein (884 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	850
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-64
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-17
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	9e-13
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-09
pfam08263	42	pfam08263, LRRNT_2, Leucine rich repeat N-terminal	8e-08
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	4e-07
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	5e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-05
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	3e-05
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	6e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	8e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	0.001
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	0.004
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.004
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.004

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  233 bits (597), Expect = 1e-64
 Identities = 214/754 (28%), Positives = 309/754 (40%), Gaps = 210/754 (27%)

Query: 38  EERKALLKFKQGLVDEFGFLSSWGSEGEKKDCCNWRGVRCSNQTGHVKVLDLHG---TGR 94
           EE + LL FK  + D   +LS+W S     D C W+G+ C+N +  V  +DL G   +G+
Sbjct: 29  EELELLLSFKSSINDPLKYLSNWNSSA---DVCLWQGITCNNSS-RVVSIDLSGKNISGK 84

Query: 95  VKVLD-----IQTRVMSGNASLRGTLNPALLKLHY-LRHLDLSFNNFSGS---------- 138
           +         IQT  +S N  L G +   +      LR+L+LS NNF+GS          
Sbjct: 85  ISSAIFRLPYIQTINLSNNQ-LSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLE 143

Query: 139 -----------QIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRA 187
                      +IP  IGS S L+ LDL      G IP  L NL+ L++L+L  N+L+  
Sbjct: 144 TLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLV-- 201

Query: 188 GNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSH 247
           G +                          +E+ ++ SLK +Y                  
Sbjct: 202 GQIP-------------------------RELGQMKSLKWIY------------------ 218

Query: 248 LNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIPKFFQ 307
                      L YNNL+            IP   G + SL  L L  N L G IP    
Sbjct: 219 -----------LGYNNLSG----------EIPYEIGGLTSLNHLDLVYNNLTGPIPSSLG 257

Query: 308 NMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAGISDSI 367
           N+  L+ L L  N L G I    FS              LQ                   
Sbjct: 258 NLKNLQYLFLYQNKLSGPIPPSIFS--------------LQ------------------- 284

Query: 368 PDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSP----SLPS 423
                    KL  L+ S N ++G  P  +  +  LE   + + SN+  G  P    SLP 
Sbjct: 285 ---------KLISLDLSDNSLSGEIPELVIQLQNLEI--LHLFSNNFTGKIPVALTSLPR 333

Query: 424 NAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNN 483
               + L  NKFSG I         NL  LDLS+N L+G++P+       L  L L +N+
Sbjct: 334 LQV-LQLWSNKFSGEIPKNLG-KHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNS 391

Query: 484 FSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVA---LEENSISGNIPAWI 540
             G+IP S G  + +  + L  N+FSGELPS    FT L +V    +  N++ G I +  
Sbjct: 392 LEGEIPKSLGACRSLRRVRLQDNSFSGELPS---EFTKLPLVYFLDISNNNLQGRINSRK 448

Query: 541 GESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERS 600
            + + +L +L L  N+F+G +P        ++ LDLS N  SG +P+   + + + Q   
Sbjct: 449 WD-MPSLQMLSLARNKFFGGLP-DSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQ--- 503

Query: 601 YNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEV 660
                                                           + LS NKL GE+
Sbjct: 504 ------------------------------------------------LKLSENKLSGEI 515

Query: 661 PEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSV 720
           P+E+     L+ L+LS N L+G I     ++  L  LDLS+NQ SG IP +L  V  L  
Sbjct: 516 PDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQ 575

Query: 721 MDLSHNNLSGKIPTGTQLQSFNASVYDGNPELCG 754
           +++SHN+L G +P+     + NAS   GN +LCG
Sbjct: 576 VNISHNHLHGSLPSTGAFLAINASAVAGNIDLCG 609

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 85.6 bits (212), Expect = 3e-17
 Identities = 50/132 (37%), Positives = 78/132 (59%), Gaps = 10/132 (7%)

Query: 632 WKGSEYEYKNTLG--LVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIG 689
           W G++ ++ +T G   +  + L +  L G +P +I  L  L  +NLS N++ G I P +G
Sbjct: 404 WSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLG 463

Query: 690 QLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGKIPT--GTQL---QSFNAS 744
            + SL+ LDLS N F+G IP SL Q+  L +++L+ N+LSG++P   G +L    SFN  
Sbjct: 464 SITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFN-- 521

Query: 745 VYDGNPELCGLP 756
            +  N  LCG+P
Sbjct: 522 -FTDNAGLCGIP 532

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 71.8 bits (176), Expect = 9e-13
 Identities = 34/93 (36%), Positives = 53/93 (56%)

Query: 453 LDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGEL 512
           L L +  L G +P+   +   L+ +NL+ N+  G IP S G +  +  L L +N+F+G +
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 513 PSLLKNFTHLRVVALEENSISGNIPAWIGESLL 545
           P  L   T LR++ L  NS+SG +PA +G  LL
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALGGRLL 515

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 67.9 bits (166), Expect = 1e-11
 Identities = 35/86 (40%), Positives = 51/86 (59%), Gaps = 1/86 (1%)

Query: 501 LSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGK 560
           L L +    G +P+ +    HL+ + L  NSI GNIP  +G S+ +L VLDL  N F G 
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLG-SITSLEVLDLSYNSFNGS 481

Query: 561 IPFQLCHLADIQILDLSLNNISGNIP 586
           IP  L  L  ++IL+L+ N++SG +P
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 59.8 bits (145), Expect = 4e-09
 Identities = 33/77 (42%), Positives = 48/77 (62%), Gaps = 1/77 (1%)

Query: 108 NASLRGTLNPALLKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPL 167
           N  LRG +   + KL +L+ ++LS N+  G+ IP  +GS++ LE LDL   SF+G IP  
Sbjct: 427 NQGLRGFIPNDISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPES 485

Query: 168 LGNLSRLQYLSLGYNKL 184
           LG L+ L+ L+L  N L
Sbjct: 486 LGQLTSLRILNLNGNSL 502

Length = 623

>gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain

 Score = 48.9 bits (117), Expect = 8e-08
 Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 3/44 (6%)

Query: 36 IEEERKALLKFKQGLV-DEFGFLSSWGSEGEKKDCCNWRGVRCS 78
          + ++R ALL FK  L  D  G LSSW       D C+W GV C 
Sbjct: 1  LNDDRDALLAFKSSLNGDPSGALSSWNPSSS--DPCSWTGVTCD 42

Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 52.7 bits (127), Expect = 4e-07
 Identities = 54/246 (21%), Positives = 80/246 (32%), Gaps = 56/246 (22%)

Query: 125 LRHLDLSFNNFSGSQ-----IPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSL 179
           L+ L LS N           +   +     L+ LDL   +       +L +L  L+  SL
Sbjct: 53  LKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESL--LRSSSL 110

Query: 180 GYNKLLRAGNLDWISQLF---------SLRYLDLSSCNLSK--STDWLQEVDKIPSLKTL 228
              KL   G  D   +L          +L  L L    L         + +     LK L
Sbjct: 111 QELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKEL 170

Query: 229 YLEQCDLQLQPTIH-----RSFSHLN----------------------SSPSLETLGLSY 261
            L    +            ++  +L                       S  SLE L L  
Sbjct: 171 NLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGD 230

Query: 262 NNLTASIYPWLFNVSSIPDA-PGPMISLRTLTLSDNELDGE----IPKFFQNMFKLEGLS 316
           NNLT +        +++  A   P ISL TL+LS N++  +    + +       L  L 
Sbjct: 231 NNLTDAG------AAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELD 284

Query: 317 LRGNSL 322
           LRGN  
Sbjct: 285 LRGNKF 290

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 52.7 bits (126), Expect = 5e-07
 Identities = 78/280 (27%), Positives = 117/280 (41%), Gaps = 40/280 (14%)

Query: 481 NNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWI 540
            ++  G            L L+L+    +    S L   T+L  + L+ N+I+ +IP  I
Sbjct: 80  ISSLDGSENLLNLLPLPSLDLNLNRLRSN---ISELLELTNLTSLDLDNNNIT-DIPPLI 135

Query: 541 GESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERS 600
           G    NL  LDL  N+    +P  L +L +++ LDLS N++S ++PK             
Sbjct: 136 GLLKSNLKELDLSDNK-IESLPSPLRNLPNLKNLDLSFNDLS-DLPK-----------LL 182

Query: 601 YNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEV 660
            N S +       ++ + LP  I              E  + L   + +DLS+N +  E+
Sbjct: 183 SNLSNLNNLDLSGNKISDLPPEI--------------ELLSAL---EELDLSNNSII-EL 224

Query: 661 PEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSV 720
              + +L  L GL LS N L       IG L +L+ LDLS NQ S    SSL  +  L  
Sbjct: 225 LSSLSNLKNLSGLELSNNKLEDLPES-IGNLSNLETLDLSNNQIS--SISSLGSLTNLRE 281

Query: 721 MDLSHNNLSGKIPTGTQLQSFNASVYDGNPELCGLPLPSK 760
           +DLS N+LS  +P               N  L    L  K
Sbjct: 282 LDLSGNSLSNALP--LIALLLLLLELLLNLLLTLKALELK 319

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 51.0 bits (122), Expect = 2e-06
 Identities = 40/130 (30%), Positives = 57/130 (43%), Gaps = 32/130 (24%)

Query: 365 DSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGP-SPSLPS 423
            +   WF D       L   +  + G  PN IS +  L+S  I++S N + G   PSL  
Sbjct: 413 STKGKWFIDG------LGLDNQGLRGFIPNDISKLRHLQS--INLSGNSIRGNIPPSL-- 462

Query: 424 NAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNN 483
                        G I+        +L  LDLS N  +G +P+   Q   LRILNL  N+
Sbjct: 463 -------------GSIT--------SLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNS 501

Query: 484 FSGKIPNSCG 493
            SG++P + G
Sbjct: 502 LSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 49.0 bits (117), Expect = 1e-05
 Identities = 24/69 (34%), Positives = 41/69 (59%)

Query: 448 QNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNN 507
           ++L  ++LS N + G +P        L +L+L+ N+F+G IP S G L  +  L+L+ N+
Sbjct: 442 RHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNS 501

Query: 508 FSGELPSLL 516
            SG +P+ L
Sbjct: 502 LSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 47.9 bits (114), Expect = 2e-05
 Identities = 51/149 (34%), Positives = 68/149 (45%), Gaps = 26/149 (17%)

Query: 38  EERKALLKFKQGLVDEFGFLSSWGSEGEKKDCC-----NWRGVRCS--NQTGH--VKVLD 88
           EE  AL   K  L    G    +G  G   D C      W G  C   +  G   +  L 
Sbjct: 372 EEVSALQTLKSSL----GLPLRFGWNG---DPCVPQQHPWSGADCQFDSTKGKWFIDGLG 424

Query: 89  LHGTGRVKVL--DI------QTRVMSGNASLRGTLNPALLKLHYLRHLDLSFNNFSGSQI 140
           L   G    +  DI      Q+  +SGN S+RG + P+L  +  L  LDLS+N+F+GS I
Sbjct: 425 LDNQGLRGFIPNDISKLRHLQSINLSGN-SIRGNIPPSLGSITSLEVLDLSYNSFNGS-I 482

Query: 141 PMFIGSLSKLEYLDLFAASFSGPIPPLLG 169
           P  +G L+ L  L+L   S SG +P  LG
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 46.6 bits (111), Expect = 3e-05
 Identities = 45/199 (22%), Positives = 73/199 (36%), Gaps = 26/199 (13%)

Query: 199 LRYLDLSSCNLSKST-DWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETL 257
           L+ LDLS   L       L+ + +  SL+ L L    L  +     +    +  P+LE L
Sbjct: 83  LQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKL 142

Query: 258 GLSYNNLT-ASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGE-IPKFFQNM---FKL 312
            L  N L  AS       + +  D       L+ L L++N +    I    + +     L
Sbjct: 143 VLGRNRLEGASCEALAKALRANRD-------LKELNLANNGIGDAGIRALAEGLKANCNL 195

Query: 313 EGLSLRGNSL--EGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAGISDSIPDW 370
           E L L  N L  EG  +         L       K L+   +    +++ AG +  +   
Sbjct: 196 EVLDLNNNGLTDEGASA---------LAETLASLKSLEVL-NLGDNNLTDAGAAA-LASA 244

Query: 371 FSDTSHKLADLNFSHNQMT 389
               +  L  L+ S N +T
Sbjct: 245 LLSPNISLLTLSLSCNDIT 263

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 42.3 bits (100), Expect = 6e-04
 Identities = 30/121 (24%), Positives = 45/121 (37%), Gaps = 8/121 (6%)

Query: 207 CNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTA 266
             L K+    + + K+  L+ L LE   L  +       S L   PSL+ L LS N    
Sbjct: 7   GELLKTERATELLPKLLCLQVLRLEGNTLG-EEAAKALASALRPQPSLKELCLSLNETGR 65

Query: 267 SIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIPKFFQNM---FKLEGLSLRGNSLE 323
                   + S+         L+ L LSDN L  +     +++     L+ L L  N L 
Sbjct: 66  IPR----GLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLG 121

Query: 324 G 324
            
Sbjct: 122 D 122

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 42.5 bits (100), Expect = 8e-04
 Identities = 23/56 (41%), Positives = 29/56 (51%), Gaps = 10/56 (17%)

Query: 248 LNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIP 303
           L S  SLE L LSYN+   SI          P++ G + SLR L L+ N L G +P
Sbjct: 462 LGSITSLEVLDLSYNSFNGSI----------PESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 41.9 bits (98), Expect = 0.001
 Identities = 49/152 (32%), Positives = 74/152 (48%), Gaps = 15/152 (9%)

Query: 114 TLNPALLKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSR 173
           +L   L  L  L++LDLSFN+ S   +P  + +LS L  LDL     S  +PP +  LS 
Sbjct: 154 SLPSPLRNLPNLKNLDLSFNDLS--DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSA 210

Query: 174 LQYLSLGYNKLLRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQC 233
           L+ L L  N ++    L  +S L +L  L+LS+  L    + +     + +L+TL L   
Sbjct: 211 LEELDLSNNSIIE--LLSSLSNLKNLSGLELSNNKLEDLPESIG---NLSNLETLDLSNN 265

Query: 234 DLQLQPTIHRSFSHLNSSPSLETLGLSYNNLT 265
            +        S S L S  +L  L LS N+L+
Sbjct: 266 QIS-------SISSLGSLTNLRELDLSGNSLS 290

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 40.6 bits (95), Expect = 0.004
 Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 10/71 (14%)

Query: 254 LETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIPKFFQNMFKLE 313
           L+++ LS N++  +I          P + G + SL  L LS N  +G IP+    +  L 
Sbjct: 444 LQSINLSGNSIRGNI----------PPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLR 493

Query: 314 GLSLRGNSLEG 324
            L+L GNSL G
Sbjct: 494 ILNLNGNSLSG 504

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.0 bits (84), Expect = 0.004
 Identities = 23/57 (40%), Positives = 29/57 (50%), Gaps = 2/57 (3%)

Query: 673 LNLSRNNLTGYITPKI-GQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNL 728
           L+LS N LT  I       L +L  LDLS N  +   P + S +  L  +DLS NNL
Sbjct: 5   LDLSNNRLT-VIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.0 bits (84), Expect = 0.004
 Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 1/42 (2%)

Query: 168 LGNLSRLQYLSLGYNKLLRAGNLDWISQLFSLRYLDLSSCNL 209
              L  L+ L L  N L    + +  S L SLR LDLS  NL
Sbjct: 20  FKGLPNLKVLDLSGNNLTSI-SPEAFSGLPSLRSLDLSGNNL 60

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	850
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.98
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.88
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.88
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.87
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.87
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.86
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.84
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.81
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.81
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.72
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.71
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.66
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.65
PLN03150	623	hypothetical protein; Provisional	99.59
PLN03150	623	hypothetical protein; Provisional	99.53
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.34
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.3
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.25
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.23
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.06
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.05
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.02
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.01
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.98
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.95
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.93
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.91
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	98.84
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.82
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.8
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.76
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.73
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.5
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.43
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.34
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.32
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.31
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.31
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.3
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.17
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.08
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.96
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.82
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.75
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.75
PRK15386	426	type III secretion protein GogB; Provisional	97.67
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.64
PRK15386	426	type III secretion protein GogB; Provisional	97.63
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.62
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.6
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.54
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.49
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.29
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.04
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.95
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.72
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.43
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.14
KOG4341	483	consensus F-box protein containing LRR [General fu	95.63
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.01
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.72
KOG4341	483	consensus F-box protein containing LRR [General fu	93.92
KOG4308	478	consensus LRR-containing protein [Function unknown	93.8
KOG4308	478	consensus LRR-containing protein [Function unknown	93.44
KOG0473	326	consensus Leucine-rich repeat protein [Function un	92.75
KOG1947	482	consensus Leucine rich repeat proteins, some prote	91.67
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	88.86
smart00370	26	LRR Leucine-rich repeats, outliers.	87.98
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	87.98
KOG0473	326	consensus Leucine-rich repeat protein [Function un	87.38
smart00370	26	LRR Leucine-rich repeats, outliers.	86.53
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	86.53
KOG1947	482	consensus Leucine rich repeat proteins, some prote	84.76
KOG3864	221	consensus Uncharacterized conserved protein [Funct	83.16
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	81.12

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.2e-72  Score=698.74  Aligned_cols=584  Identities=33%  Similarity=0.522  Sum_probs=507.4

Q ss_pred             cHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCccccceEecCCCCCEEEEEcCCCCCcccchhhhhccCCCCCCcccc
Q 048351           36 IEEERKALLKFKQGLVDEFGFLSSWGSEGEKKDCCNWRGVRCSNQTGHVKVLDLHGTGRVKVLDIQTRVMSGNASLRGTL  115 (850)
Q Consensus        36 ~~~~~~~Ll~~k~~~~~~~~~l~~W~~~~~~~~~c~w~gv~C~~~~~~v~~l~L~~~~~l~~l~l~~~~~~~~~~l~g~l  115 (850)
                      .++|++||++||+++.+|.+.+.+|.   .+.+||.|.||+|++ .++|+.++|++                 +.++|.+
T Consensus        27 ~~~~~~~l~~~~~~~~~~~~~~~~w~---~~~~~c~w~gv~c~~-~~~v~~L~L~~-----------------~~i~~~~   85 (968)
T PLN00113         27 HAEELELLLSFKSSINDPLKYLSNWN---SSADVCLWQGITCNN-SSRVVSIDLSG-----------------KNISGKI   85 (968)
T ss_pred             CHHHHHHHHHHHHhCCCCcccCCCCC---CCCCCCcCcceecCC-CCcEEEEEecC-----------------CCccccC
Confidence            56899999999999988888889997   467899999999985 57999999998                 5788999


Q ss_pred             cccccCCCCCCEEeCCCCCCCCCCCCcccC-CCCCCCEEeCCCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCCccccc
Q 048351          116 NPALLKLHYLRHLDLSFNNFSGSQIPMFIG-SLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAGNLDWIS  194 (850)
Q Consensus       116 ~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~  194 (850)
                      ++++..+++|++|+|++|.+++. +|..+. .+++|++|+|++|.+++.+|.  +.+++|++|+|++|.+. ...+..++
T Consensus        86 ~~~~~~l~~L~~L~Ls~n~~~~~-ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~-~~~p~~~~  161 (968)
T PLN00113         86 SSAIFRLPYIQTINLSNNQLSGP-IPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLS-GEIPNDIG  161 (968)
T ss_pred             ChHHhCCCCCCEEECCCCccCCc-CChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCccc-ccCChHHh
Confidence            99999999999999999999985 887655 899999999999999998885  56899999999999863 34455688


Q ss_pred             cCCCccEEeCCCCCCCCCcchhhhhcCCCCCcEEEccCCCCCCCCCccccccccCCCCcccEEEccCCCCCCccchhhhc
Q 048351          195 QLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFN  274 (850)
Q Consensus       195 ~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~  274 (850)
                      ++++|++|++++|.+.+.  +|..+.++++|++|++++|.+.+..|    ..+.++ ++|++|++++|++++.+      
T Consensus       162 ~l~~L~~L~L~~n~l~~~--~p~~~~~l~~L~~L~L~~n~l~~~~p----~~l~~l-~~L~~L~L~~n~l~~~~------  228 (968)
T PLN00113        162 SFSSLKVLDLGGNVLVGK--IPNSLTNLTSLEFLTLASNQLVGQIP----RELGQM-KSLKWIYLGYNNLSGEI------  228 (968)
T ss_pred             cCCCCCEEECccCccccc--CChhhhhCcCCCeeeccCCCCcCcCC----hHHcCc-CCccEEECcCCccCCcC------
Confidence            999999999999988774  56788889999999999999888776    566666 88999999999888764      


Q ss_pred             CCCCCCCCCCCCCCcEEEccCCcCCcccchhhhcCCCCcEEEccCCccccccccccccccccccCCCCCChhccCCCCCC
Q 048351          275 VSSIPDAPGPMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFS  354 (850)
Q Consensus       275 l~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~~~l~~~~p~~l~~l~~L~  354 (850)
                          |..++.+++|++|++++|.+++.+|..++++++|++|++++|.+.+.+|                 ..+.++++|+
T Consensus       229 ----p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-----------------~~l~~l~~L~  287 (968)
T PLN00113        229 ----PYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIP-----------------PSIFSLQKLI  287 (968)
T ss_pred             ----ChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCc-----------------hhHhhccCcC
Confidence                4446778889999999999988888889999999999999888876544                 3477788888


Q ss_pred             EEEccCCcCCCCCchhHhhcCcCCCEEecccCcCcccCChhhhhhccCCcCEEEccCCcCcccCCCCCCCCcEEEccCCc
Q 048351          355 VLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSLPSNAFYIDLSKNK  434 (850)
Q Consensus       355 ~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~L~~L~Ls~n~  434 (850)
                      .|++++|.+.+.+|..+... ++|++|++++|.+.+..|..+ ... ++|+.|++++|.+++.+|..+            
T Consensus       288 ~L~Ls~n~l~~~~p~~~~~l-~~L~~L~l~~n~~~~~~~~~~-~~l-~~L~~L~L~~n~l~~~~p~~l------------  352 (968)
T PLN00113        288 SLDLSDNSLSGEIPELVIQL-QNLEILHLFSNNFTGKIPVAL-TSL-PRLQVLQLWSNKFSGEIPKNL------------  352 (968)
T ss_pred             EEECcCCeeccCCChhHcCC-CCCcEEECCCCccCCcCChhH-hcC-CCCCEEECcCCCCcCcCChHH------------
Confidence            89998888888888877654 678888888888888877766 322 556666666665555444321            


Q ss_pred             CcCccccccccCCCCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCCCccccccCccEEeccCCccccCCch
Q 048351          435 FSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPS  514 (850)
Q Consensus       435 l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~  514 (850)
                               . .+++|+.|++++|.+++.+|..+..+++|+.|++++|.+.+.+|..++.+++|+.|++++|++++.+|.
T Consensus       353 ---------~-~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~  422 (968)
T PLN00113        353 ---------G-KHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPS  422 (968)
T ss_pred             ---------h-CCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECCh
Confidence                     1 347899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcCCCCcCeeccccccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccCcccCCccccCccc
Q 048351          515 LLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTA  594 (850)
Q Consensus       515 ~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  594 (850)
                      .+..+++|+.|++++|.+++.+|..+. .+++|++|++++|++.+.+|..+ ..++|+.|++++|++++.+|..+.+++.
T Consensus       423 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~  500 (968)
T PLN00113        423 EFTKLPLVYFLDISNNNLQGRINSRKW-DMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSE  500 (968)
T ss_pred             hHhcCCCCCEEECcCCcccCccChhhc-cCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhc
Confidence            999999999999999999988888776 69999999999999999888765 4689999999999999998887766655


Q ss_pred             CccccccCccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEe
Q 048351          595 MTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLN  674 (850)
Q Consensus       595 L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  674 (850)
                      |                                                   +.|+|++|++++.+|..++.+++|++|+
T Consensus       501 L---------------------------------------------------~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  529 (968)
T PLN00113        501 L---------------------------------------------------MQLKLSENKLSGEIPDELSSCKKLVSLD  529 (968)
T ss_pred             c---------------------------------------------------CEEECcCCcceeeCChHHcCccCCCEEE
Confidence            5                                                   8899999999999999999999999999


Q ss_pred             cCCCcCccCCCccccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCCcCcccCCCCCcCCCcCccccCCCCCCCC
Q 048351          675 LSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGKIPTGTQLQSFNASVYDGNPELCG  754 (850)
Q Consensus       675 Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~lc~  754 (850)
                      |++|.+++.+|..++.+++|+.|||++|+++|.+|..+..+++|++||+++|+++|.+|..+++.++...++.|||.+||
T Consensus       530 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~  609 (968)
T PLN00113        530 LSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCG  609 (968)
T ss_pred             CCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CC
Q 048351          755 LP  756 (850)
Q Consensus       755 ~~  756 (850)
                      .+
T Consensus       610 ~~  611 (968)
T PLN00113        610 GD  611 (968)
T ss_pred             Cc
Confidence            64

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=4.4e-58  Score=568.65  Aligned_cols=518  Identities=33%  Similarity=0.438  Sum_probs=446.8

Q ss_pred             CCCCEEeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCcccC-CCCCCcEEEccCCCCCCCCCccccccCCCccE
Q 048351          123 HYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLG-NLSRLQYLSLGYNKLLRAGNLDWISQLFSLRY  201 (850)
Q Consensus       123 ~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~  201 (850)
                      .+++.|||++|.+++. +|..+..+++|++|+|++|.+++.+|..+. .+++|++|+|++|.+....+   .+.+++|++
T Consensus        69 ~~v~~L~L~~~~i~~~-~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p---~~~l~~L~~  144 (968)
T PLN00113         69 SRVVSIDLSGKNISGK-ISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIP---RGSIPNLET  144 (968)
T ss_pred             CcEEEEEecCCCcccc-CChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccC---ccccCCCCE
Confidence            4789999999999996 888899999999999999999999998754 99999999999998643221   256889999


Q ss_pred             EeCCCCCCCCCcchhhhhcCCCCCcEEEccCCCCCCCCCccccccccCCCCcccEEEccCCCCCCccchhhhcCCCCCCC
Q 048351          202 LDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDA  281 (850)
Q Consensus       202 L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~ip~~  281 (850)
                      |++++|.+++.  ++..++.+++|++|++++|.+.+..|    ..+.++ ++|++|++++|++++.          +|..
T Consensus       145 L~Ls~n~~~~~--~p~~~~~l~~L~~L~L~~n~l~~~~p----~~~~~l-~~L~~L~L~~n~l~~~----------~p~~  207 (968)
T PLN00113        145 LDLSNNMLSGE--IPNDIGSFSSLKVLDLGGNVLVGKIP----NSLTNL-TSLEFLTLASNQLVGQ----------IPRE  207 (968)
T ss_pred             EECcCCccccc--CChHHhcCCCCCEEECccCcccccCC----hhhhhC-cCCCeeeccCCCCcCc----------CChH
Confidence            99999999864  66788999999999999999888777    566666 8999999999998876          4445


Q ss_pred             CCCCCCCcEEEccCCcCCcccchhhhcCCCCcEEEccCCccccccccccccccccccCCCCCChhccCCCCCCEEEccCC
Q 048351          282 PGPMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSA  361 (850)
Q Consensus       282 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n  361 (850)
                      ++.+++|++|++++|.+++.+|..++++++|++|++++|.+.+.+|                 ..+.++++|+.|++++|
T Consensus       208 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-----------------~~l~~l~~L~~L~L~~n  270 (968)
T PLN00113        208 LGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIP-----------------SSLGNLKNLQYLFLYQN  270 (968)
T ss_pred             HcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccC-----------------hhHhCCCCCCEEECcCC
Confidence            6788899999999999999999999999999999999998876544                 34788889999999999


Q ss_pred             cCCCCCchhHhhcCcCCCEEecccCcCcccCChhhhhhccCCcCEEEccCCcCcccCCCCCCCCcEEEccCCcCcCcccc
Q 048351          362 GISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSLPSNAFYIDLSKNKFSGPISF  441 (850)
Q Consensus       362 ~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~  441 (850)
                      .+.+.+|..+... ++|++|++++|.+.+.+|..+ ... .+++.|++++|.+++..|..+.                  
T Consensus       271 ~l~~~~p~~l~~l-~~L~~L~Ls~n~l~~~~p~~~-~~l-~~L~~L~l~~n~~~~~~~~~~~------------------  329 (968)
T PLN00113        271 KLSGPIPPSIFSL-QKLISLDLSDNSLSGEIPELV-IQL-QNLEILHLFSNNFTGKIPVALT------------------  329 (968)
T ss_pred             eeeccCchhHhhc-cCcCEEECcCCeeccCCChhH-cCC-CCCcEEECCCCccCCcCChhHh------------------
Confidence            9988888887664 688888998888888888776 322 5566666666655554443221                  


Q ss_pred             ccccCCCCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCCCccccccCccEEeccCCccccCCchhhcCCCC
Q 048351          442 LCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTH  521 (850)
Q Consensus       442 ~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~  521 (850)
                          .+++|+.|++++|.+.+.+|..+..+++|+.|++++|++++.+|..+..+++|+.|++++|++.+.+|..+..+++
T Consensus       330 ----~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~  405 (968)
T PLN00113        330 ----SLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRS  405 (968)
T ss_pred             ----cCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCC
Confidence                3478999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCeeccccccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccCcccCCccccCcccCcccccc
Q 048351          522 LRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSY  601 (850)
Q Consensus       522 L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~  601 (850)
                      |+.|++++|++++.+|..+. .+++|+.|++++|.+++.+|..+..+++|+.|++++|++.+.+|..+. .         
T Consensus       406 L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~-~---------  474 (968)
T PLN00113        406 LRRVRLQDNSFSGELPSEFT-KLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG-S---------  474 (968)
T ss_pred             CCEEECcCCEeeeECChhHh-cCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccc-c---------
Confidence            99999999999999998877 799999999999999999999999999999999999999988876542 1         


Q ss_pred             CccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCc
Q 048351          602 NSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLT  681 (850)
Q Consensus       602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  681 (850)
                                                                +.|+.||+++|++++.+|..+.++++|+.|+|++|+++
T Consensus       475 ------------------------------------------~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~  512 (968)
T PLN00113        475 ------------------------------------------KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLS  512 (968)
T ss_pred             ------------------------------------------ccceEEECcCCccCCccChhhhhhhccCEEECcCCcce
Confidence                                                      23489999999999999999999999999999999999


Q ss_pred             cCCCccccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCCcCcccCCCC-CcCCCcCccccCCCCCCCCCC
Q 048351          682 GYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGKIPTG-TQLQSFNASVYDGNPELCGLP  756 (850)
Q Consensus       682 ~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~lc~~~  756 (850)
                      +.+|..++++++|++|+|++|++++.+|..+..+++|++||+++|+++|.+|.. ..+..+....+.+|+..+..|
T Consensus       513 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p  588 (968)
T PLN00113        513 GEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP  588 (968)
T ss_pred             eeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCC
Confidence            999999999999999999999999999999999999999999999999999975 344556666788888776444

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=3.4e-38  Score=329.79  Aligned_cols=271  Identities=23%  Similarity=0.257  Sum_probs=194.4

Q ss_pred             CCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCCCccccccCccEEeccCCccccCCchhhcCCCCcCeecc
Q 048351          448 QNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVAL  527 (850)
Q Consensus       448 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L  527 (850)
                      .+|..|.|+.|+++...+..|.+++.|+.|+|..|+|.-.---.|.++++|+.|.|..|++...-...|..+.++++|+|
T Consensus       197 nsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L  276 (873)
T KOG4194|consen  197 NSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNL  276 (873)
T ss_pred             chheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeec
Confidence            56777788888887666667777888888888888776333456777888888888888887666677778888888888


Q ss_pred             ccccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccCcccCCccccCcccCccccccCccccc
Q 048351          528 EENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAIT  607 (850)
Q Consensus       528 ~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~  607 (850)
                      +.|+++..-..|++ ++++|+.|++++|.|...-++.+..+++|++|||++|+|+...+..|..+..|            
T Consensus       277 ~~N~l~~vn~g~lf-gLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~L------------  343 (873)
T KOG4194|consen  277 ETNRLQAVNEGWLF-GLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQL------------  343 (873)
T ss_pred             ccchhhhhhccccc-ccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHh------------
Confidence            88888744445666 68888888888888877777777778888888888888875555555444433            


Q ss_pred             cccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCCCc-
Q 048351          608 FSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITP-  686 (850)
Q Consensus       608 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~-  686 (850)
                                                             +.|+|++|.+...-...|..+++|++|||++|.+++.|.+ 
T Consensus       344 ---------------------------------------e~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDa  384 (873)
T KOG4194|consen  344 ---------------------------------------EELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDA  384 (873)
T ss_pred             ---------------------------------------hhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecc
Confidence                                                   6778888888766666777788888888888888776654 


Q ss_pred             --cccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCCcCcccCCCCCcCCCcCccccCCCCCCCCCCCC------
Q 048351          687 --KIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGKIPTGTQLQSFNASVYDGNPELCGLPLP------  758 (850)
Q Consensus       687 --~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~lc~~~~~------  758 (850)
                        .|..|++|+.|+|.+|+|..+....|.++..|++|||.+|.+-..-|....--.+....+..-..+|+|.+.      
T Consensus       385 a~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nSssflCDCql~Wl~qWl  464 (873)
T KOG4194|consen  385 AVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKELVMNSSSFLCDCQLKWLAQWL  464 (873)
T ss_pred             hhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccchhhhhhhcccceEEeccHHHHHHHH
Confidence              366678888888888888877777788888888888888877644443322224444455556677877543      


Q ss_pred             ----------CCCCCCCCCCCC
Q 048351          759 ----------SKCWDEESAPGP  770 (850)
Q Consensus       759 ----------~~c~~~~~~~~~  770 (850)
                                ..|.+|+...+.
T Consensus       465 ~~~~lq~sv~a~CayPe~Lad~  486 (873)
T KOG4194|consen  465 YRRKLQSSVIAKCAYPEPLADQ  486 (873)
T ss_pred             HhcccccceeeeccCCcccccc
Confidence                      468887776554

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=5.8e-41  Score=336.21  Aligned_cols=473  Identities=23%  Similarity=0.328  Sum_probs=248.7

Q ss_pred             CCEEeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCCccccccCCCccEEeC
Q 048351          125 LRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAGNLDWISQLFSLRYLDL  204 (850)
Q Consensus       125 L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~L  204 (850)
                      |+.|++++|.+.  .+.+.+.++..|.+|++++|+++ ..|.+++.+.+++.|+.++|++  ...++.+..+.+|+.+++
T Consensus        47 l~~lils~N~l~--~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~l--s~lp~~i~s~~~l~~l~~  121 (565)
T KOG0472|consen   47 LQKLILSHNDLE--VLREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKL--SELPEQIGSLISLVKLDC  121 (565)
T ss_pred             hhhhhhccCchh--hccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchH--hhccHHHhhhhhhhhhhc
Confidence            444455555544  23344444555555555555554 3444455555555555555543  222333444445555555


Q ss_pred             CCCCCCCCcchhhhhcCCCCCcEEEccCCCCCCCCCccccccccCCCCcccEEEccCCCCCCccchhhhcCCCCCCCCCC
Q 048351          205 SSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGP  284 (850)
Q Consensus       205 s~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~ip~~l~~  284 (850)
                      ++|.+..   .+++++.+..|+.++..+|+++..++     +++.+ .+|..+++.+|++..           +|+..-+
T Consensus       122 s~n~~~e---l~~~i~~~~~l~dl~~~~N~i~slp~-----~~~~~-~~l~~l~~~~n~l~~-----------l~~~~i~  181 (565)
T KOG0472|consen  122 SSNELKE---LPDSIGRLLDLEDLDATNNQISSLPE-----DMVNL-SKLSKLDLEGNKLKA-----------LPENHIA  181 (565)
T ss_pred             cccceee---cCchHHHHhhhhhhhccccccccCch-----HHHHH-HHHHHhhccccchhh-----------CCHHHHH
Confidence            5554444   23444445555555555555554443     33333 455555555555443           2222223


Q ss_pred             CCCCcEEEccCCcCCcccchhhhcCCCCcEEEccCCccccccccccccccccccCCCCCChhccCCCCCCEEEccCCcCC
Q 048351          285 MISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAGIS  364 (850)
Q Consensus       285 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~  364 (850)
                      ++.|++||...|.+. .+|..++.+.+|+.|+|.+|++...                  | .|..+..|.++.++.|++.
T Consensus       182 m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~~l------------------P-ef~gcs~L~Elh~g~N~i~  241 (565)
T KOG0472|consen  182 MKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIRFL------------------P-EFPGCSLLKELHVGENQIE  241 (565)
T ss_pred             HHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccccC------------------C-CCCccHHHHHHHhcccHHH
Confidence            455555555555544 4455555555555555555554421                  1 1344444444444444443


Q ss_pred             CCCchhHhhcCcCCCEEecccCcCcccCChhhhhhccCCcCEEEccCCcCcccCCCCCCCCcEEEccCCcCcCccccccc
Q 048351          365 DSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSLPSNAFYIDLSKNKFSGPISFLCS  444 (850)
Q Consensus       365 ~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~  444 (850)
                       .+|....+.++++..||+.+|+++ ..|..+ ... .++..||+++|.+++.++                     ... 
T Consensus       242 -~lpae~~~~L~~l~vLDLRdNklk-e~Pde~-clL-rsL~rLDlSNN~is~Lp~---------------------sLg-  295 (565)
T KOG0472|consen  242 -MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEI-CLL-RSLERLDLSNNDISSLPY---------------------SLG-  295 (565)
T ss_pred             -hhHHHHhcccccceeeeccccccc-cCchHH-HHh-hhhhhhcccCCccccCCc---------------------ccc-
Confidence             234444434445555555555555 344333 221 223333333333332222                     111 


Q ss_pred             cCCCCccEEEccCCCCCCCCCcccccCC---CCCEEE-------cCCCc---c-ccc-CC---CccccccCccEEeccCC
Q 048351          445 FSGQNLVYLDLSSNLLSGKLPDCWLQFN---MLRILN-------LANNN---F-SGK-IP---NSCGYLQKMLTLSLHHN  506 (850)
Q Consensus       445 ~~~~~L~~L~Ls~n~l~~~~p~~~~~l~---~L~~L~-------Ls~N~---l-~~~-~p---~~~~~l~~L~~L~Ls~N  506 (850)
                       ++ .|+.|.+.+|.+... -..+-+..   -|++|.       ++.-.   - .+. .+   .......+.+.|++++-
T Consensus       296 -nl-hL~~L~leGNPlrTi-Rr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~  372 (565)
T KOG0472|consen  296 -NL-HLKFLALEGNPLRTI-RREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDK  372 (565)
T ss_pred             -cc-eeeehhhcCCchHHH-HHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhccccc
Confidence             11 455555555554311 11110000   011110       00000   0 000 00   11223456667777777


Q ss_pred             ccccCCchhhcCCCC---cCeeccccccceeecchhHHhcCCCCCEE-EccCCccccccCcCcCCCCCcceeecccccCc
Q 048351          507 NFSGELPSLLKNFTH---LRVVALEENSISGNIPAWIGESLLNLVVL-DLRSNRFYGKIPFQLCHLADIQILDLSLNNIS  582 (850)
Q Consensus       507 ~l~~~~p~~l~~l~~---L~~L~L~~N~l~~~ip~~~~~~l~~L~~L-~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  582 (850)
                      +++ .+|+.......   ....+++.|++. ++|..+. .+..+.+. ++++|.+ +.+|..++.+++|..|+|++|.+.
T Consensus       373 qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~-~lkelvT~l~lsnn~i-sfv~~~l~~l~kLt~L~L~NN~Ln  448 (565)
T KOG0472|consen  373 QLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLV-ELKELVTDLVLSNNKI-SFVPLELSQLQKLTFLDLSNNLLN  448 (565)
T ss_pred             ccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhH-HHHHHHHHHHhhcCcc-ccchHHHHhhhcceeeecccchhh
Confidence            776 44544333333   666777777776 7776655 24444433 3444444 466777777777777777777665


Q ss_pred             ccCCccccCcccCccccccCccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChh
Q 048351          583 GNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPE  662 (850)
Q Consensus       583 ~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~  662 (850)
                       .+|..++.+-.                                                   |+.||+|+|+|. .+|.
T Consensus       449 -~LP~e~~~lv~---------------------------------------------------Lq~LnlS~NrFr-~lP~  475 (565)
T KOG0472|consen  449 -DLPEEMGSLVR---------------------------------------------------LQTLNLSFNRFR-MLPE  475 (565)
T ss_pred             -hcchhhhhhhh---------------------------------------------------hheecccccccc-cchH
Confidence             55555444333                                                   378888999887 7888


Q ss_pred             hhhccccCCeEecCCCcCccCCCccccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCCcCc
Q 048351          663 EIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLS  729 (850)
Q Consensus       663 ~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~  729 (850)
                      .+-.+..++.+-.++|++....|+.+.+|.+|..|||.+|.+. .+|..++++++|++|++++|++.
T Consensus       476 ~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  476 CLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             HHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence            8888888887777788888777777888999999999999988 77888999999999999999987

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=6.9e-36  Score=312.56  Aligned_cols=357  Identities=25%  Similarity=0.249  Sum_probs=202.6

Q ss_pred             CEEeCCCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCCccccccCCCccEEeCCCCCCCCCcchhhhhcCCCCCcEEEc
Q 048351          151 EYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYL  230 (850)
Q Consensus       151 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L  230 (850)
                      +.||+++|.++..-+..|.++++|+.+++.+|.+...  |...+...+|+.|+|.+|.|+.+.  .+++..++.|+.|||
T Consensus        81 ~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~I--P~f~~~sghl~~L~L~~N~I~sv~--se~L~~l~alrslDL  156 (873)
T KOG4194|consen   81 QTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRI--PRFGHESGHLEKLDLRHNLISSVT--SEELSALPALRSLDL  156 (873)
T ss_pred             eeeeccccccccCcHHHHhcCCcceeeeeccchhhhc--ccccccccceeEEeeecccccccc--HHHHHhHhhhhhhhh
Confidence            4466666666655555666666666666666654221  111222334666666666666552  255666666666666


Q ss_pred             cCCCCCCCCCccccccccCCCCcccEEEccCCCCCCccchhhhcCCCCCCCCCCCCCCcEEEccCCcCCcccchhhhcCC
Q 048351          231 EQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIPKFFQNMF  310 (850)
Q Consensus       231 ~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  310 (850)
                      +.|.++..+.    .++-.. .++++|+|++|+|+..          -...|..+.+|..|.|+.|+++...+..|.+++
T Consensus       157 SrN~is~i~~----~sfp~~-~ni~~L~La~N~It~l----------~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~  221 (873)
T KOG4194|consen  157 SRNLISEIPK----PSFPAK-VNIKKLNLASNRITTL----------ETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLP  221 (873)
T ss_pred             hhchhhcccC----CCCCCC-CCceEEeecccccccc----------ccccccccchheeeecccCcccccCHHHhhhcc
Confidence            6666665544    334343 6788888888887753          223466777888888888888876667778888


Q ss_pred             CCcEEEccCCccccccccccccccccccCCCCCChhccCCCCCCEEEccCCcCCCCCchhHhhcCcCCCEEecccCcCcc
Q 048351          311 KLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTG  390 (850)
Q Consensus       311 ~L~~L~L~~N~l~~~~~~~~~~~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~  390 (850)
                      +|+.|+|..|+|.-.--.+                 |..+++|+.|.+..|++...-...|+.+ .++++|+|+.|++..
T Consensus       222 ~L~~LdLnrN~irive~lt-----------------FqgL~Sl~nlklqrN~I~kL~DG~Fy~l-~kme~l~L~~N~l~~  283 (873)
T KOG4194|consen  222 KLESLDLNRNRIRIVEGLT-----------------FQGLPSLQNLKLQRNDISKLDDGAFYGL-EKMEHLNLETNRLQA  283 (873)
T ss_pred             hhhhhhccccceeeehhhh-----------------hcCchhhhhhhhhhcCcccccCcceeee-cccceeecccchhhh
Confidence            8888888888876332111                 6677777777777777776555555443 567777777776664


Q ss_pred             cCChhhhhhccCCcCEEEccCCcCcccCCCCCCCCcEEEccCCcCcCccccccccCCCCccEEEccCCCCCCCCCccccc
Q 048351          391 RFPNYISSMFILESPGIDISSNHLEGPSPSLPSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQ  470 (850)
Q Consensus       391 ~~p~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~  470 (850)
                      .-..++.                                                ++++|+.|+||+|.|...-++.+..
T Consensus       284 vn~g~lf------------------------------------------------gLt~L~~L~lS~NaI~rih~d~Wsf  315 (873)
T KOG4194|consen  284 VNEGWLF------------------------------------------------GLTSLEQLDLSYNAIQRIHIDSWSF  315 (873)
T ss_pred             hhccccc------------------------------------------------ccchhhhhccchhhhheeecchhhh
Confidence            3333321                                                2244555555555554444445555


Q ss_pred             CCCCCEEEcCCCcccccCCCccccccCccEEeccCCccccCCchhhcCCCCcCeeccccccceeecchh--HHhcCCCCC
Q 048351          471 FNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAW--IGESLLNLV  548 (850)
Q Consensus       471 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~--~~~~l~~L~  548 (850)
                      +++|++|+|++|+++...+.+|..+..|++|+|++|+++..-...|..+++|+.|||++|.++..|.+.  .+.++++|+
T Consensus       316 tqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~Lr  395 (873)
T KOG4194|consen  316 TQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLR  395 (873)
T ss_pred             cccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhh
Confidence            555555555555555444444555555555555555554433444455555555555555555444321  223445555


Q ss_pred             EEEccCCccccccCcCcCCCCCcceeecccccCcccCCccccCc
Q 048351          549 VLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNF  592 (850)
Q Consensus       549 ~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l  592 (850)
                      .|++.+|++..+.-.+|.++++|++|||.+|.|..+.|..|..+
T Consensus       396 kL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m  439 (873)
T KOG4194|consen  396 KLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM  439 (873)
T ss_pred             heeecCceeeecchhhhccCcccceecCCCCcceeecccccccc
Confidence            55555555554434445555555555555555554555554444

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=1.6e-38  Score=318.71  Aligned_cols=471  Identities=25%  Similarity=0.384  Sum_probs=317.9

Q ss_pred             ccccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCCccccc
Q 048351          115 LNPALLKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAGNLDWIS  194 (850)
Q Consensus       115 l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~  194 (850)
                      +.+.+.++..|.+|++++|+++  +.|++++.+..++.|+.++|+++ .+|+.++.+.+|+.|+.++|.+  ...++.++
T Consensus        60 l~~dl~nL~~l~vl~~~~n~l~--~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~--~el~~~i~  134 (565)
T KOG0472|consen   60 LREDLKNLACLTVLNVHDNKLS--QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNEL--KELPDSIG  134 (565)
T ss_pred             ccHhhhcccceeEEEeccchhh--hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhccccce--eecCchHH
Confidence            3455777888888888888887  57888888888888888888887 6788888888888888888875  33455677


Q ss_pred             cCCCccEEeCCCCCCCCCcchhhhhcCCCCCcEEEccCCCCCCCCCccccccccCCCCcccEEEccCCCCCCccchhhhc
Q 048351          195 QLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFN  274 (850)
Q Consensus       195 ~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~  274 (850)
                      .+..|..++..+|+++.   .|..+..+.+|..+++.+|++...++     ...++ +.|++||...|.++.        
T Consensus       135 ~~~~l~dl~~~~N~i~s---lp~~~~~~~~l~~l~~~~n~l~~l~~-----~~i~m-~~L~~ld~~~N~L~t--------  197 (565)
T KOG0472|consen  135 RLLDLEDLDATNNQISS---LPEDMVNLSKLSKLDLEGNKLKALPE-----NHIAM-KRLKHLDCNSNLLET--------  197 (565)
T ss_pred             HHhhhhhhhcccccccc---CchHHHHHHHHHHhhccccchhhCCH-----HHHHH-HHHHhcccchhhhhc--------
Confidence            88888888888888887   46677788888888888888887776     33334 788888888887764        


Q ss_pred             CCCCCCCCCCCCCCcEEEccCCcCCcccchhhhcCCCCcEEEccCCccccccccccccccccccCCCCCChhccCCCCCC
Q 048351          275 VSSIPDAPGPMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFS  354 (850)
Q Consensus       275 l~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~~~l~~~~p~~l~~l~~L~  354 (850)
                         +|..++.+.+|+.|+|..|++. ..| .|.++..|++++++.|+|.-...+                 ....++++.
T Consensus       198 ---lP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lpae-----------------~~~~L~~l~  255 (565)
T KOG0472|consen  198 ---LPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEMLPAE-----------------HLKHLNSLL  255 (565)
T ss_pred             ---CChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHhhHHH-----------------Hhcccccce
Confidence               6666778888888888888887 566 678888888888888887633222                 134778888


Q ss_pred             EEEccCCcCCCCCchhHhhcCcCCCEEecccCcCcccCChhhhhhccCCcCEEEccCCcCcccCCCC-----CCCCcEEE
Q 048351          355 VLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSL-----PSNAFYID  429 (850)
Q Consensus       355 ~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~l~~N~l~~~~~~~-----~~~L~~L~  429 (850)
                      +||+..|+++. .|+.+... .+|.+||+|+|.+++ .|..+ +.  ..++.|.+.+|.+...--..     ..-|++|.
T Consensus       256 vLDLRdNklke-~Pde~clL-rsL~rLDlSNN~is~-Lp~sL-gn--lhL~~L~leGNPlrTiRr~ii~~gT~~vLKyLr  329 (565)
T KOG0472|consen  256 VLDLRDNKLKE-VPDEICLL-RSLERLDLSNNDISS-LPYSL-GN--LHLKFLALEGNPLRTIRREIISKGTQEVLKYLR  329 (565)
T ss_pred             eeecccccccc-CchHHHHh-hhhhhhcccCCcccc-CCccc-cc--ceeeehhhcCCchHHHHHHHHcccHHHHHHHHH
Confidence            88888888874 55555443 568888888888874 45444 33  35666777777654211100     00011110


Q ss_pred             c--cCCcCcCccccccccCCCCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCCCcccccc---CccEEecc
Q 048351          430 L--SKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQ---KMLTLSLH  504 (850)
Q Consensus       430 L--s~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~---~L~~L~Ls  504 (850)
                      =  ..-.++..  ..     ..-..-+.    ..+..| ......+.+.|+++.-+++ .+|+......   -....+++
T Consensus       330 s~~~~dglS~s--e~-----~~e~~~t~----~~~~~~-~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~Vnfs  396 (565)
T KOG0472|consen  330 SKIKDDGLSQS--EG-----GTETAMTL----PSESFP-DIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFS  396 (565)
T ss_pred             HhhccCCCCCC--cc-----cccccCCC----CCCccc-chhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecc
Confidence            0  00000000  00     00000000    011111 1223455677777777776 4554432222   26677888


Q ss_pred             CCccccCCchhhcCCCCcCe-eccccccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccCcc
Q 048351          505 HNNFSGELPSLLKNFTHLRV-VALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISG  583 (850)
Q Consensus       505 ~N~l~~~~p~~l~~l~~L~~-L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  583 (850)
                      .|++. ++|..+..++.+.+ +++++|.++ .+|..+. .+++|..|+|++|.+. .+|..++.+..|+.||+|.|+|. 
T Consensus       397 kNqL~-elPk~L~~lkelvT~l~lsnn~is-fv~~~l~-~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-  471 (565)
T KOG0472|consen  397 KNQLC-ELPKRLVELKELVTDLVLSNNKIS-FVPLELS-QLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-  471 (565)
T ss_pred             cchHh-hhhhhhHHHHHHHHHHHhhcCccc-cchHHHH-hhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-
Confidence            88887 67776666665544 455555554 6776666 5888888888888876 67888888888888888888886 


Q ss_pred             cCCccccCcccCccccccCccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhh
Q 048351          584 NIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEE  663 (850)
Q Consensus       584 ~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~  663 (850)
                      .+|.++..+..+                                                   +.+-.++|++....|+.
T Consensus       472 ~lP~~~y~lq~l---------------------------------------------------Etllas~nqi~~vd~~~  500 (565)
T KOG0472|consen  472 MLPECLYELQTL---------------------------------------------------ETLLASNNQIGSVDPSG  500 (565)
T ss_pred             cchHHHhhHHHH---------------------------------------------------HHHHhccccccccChHH
Confidence            666665443333                                                   44555668887666666


Q ss_pred             hhccccCCeEecCCCcCccCCCccccccCCCCeeeCCCCcCc
Q 048351          664 IMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFS  705 (850)
Q Consensus       664 l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~  705 (850)
                      +.+|.+|..|||.+|.+. .||+.++++++|++|++++|.+.
T Consensus       501 l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  501 LKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             hhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence            888899999999999888 67888999999999999999888

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=100.00  E-value=3.7e-37  Score=339.23  Aligned_cols=482  Identities=25%  Similarity=0.276  Sum_probs=321.6

Q ss_pred             EeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCCccccccCCCccEEeCCCC
Q 048351          128 LDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAGNLDWISQLFSLRYLDLSSC  207 (850)
Q Consensus       128 L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~n  207 (850)
                      +|.+...+.  .||..+-.-..++.|+++.|.+-...-+.....-+|+.||+++|++...  +..+..+.+|+.|+++.|
T Consensus         3 vd~s~~~l~--~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~~f--p~~it~l~~L~~ln~s~n   78 (1081)
T KOG0618|consen    3 VDASDEQLE--LIPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQISSF--PIQITLLSHLRQLNLSRN   78 (1081)
T ss_pred             cccccccCc--ccchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccccC--CchhhhHHHHhhcccchh
Confidence            456666655  4665554444466666666655432222333444466666666554221  222444555555555555


Q ss_pred             CCCCCcchhhhhcCCCCCcEEEccCCCCCCCCCccccccccCCCCcccEEEccCCCCCCccchhhhcCCCCCCCCCCCCC
Q 048351          208 NLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMIS  287 (850)
Q Consensus       208 ~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~ip~~l~~l~~  287 (850)
                      .|...   |.+..++.+|++|.|.+|.+...+.     ++..+ ++|++||++.|++..           +|..+..++.
T Consensus        79 ~i~~v---p~s~~~~~~l~~lnL~~n~l~~lP~-----~~~~l-knl~~LdlS~N~f~~-----------~Pl~i~~lt~  138 (1081)
T KOG0618|consen   79 YIRSV---PSSCSNMRNLQYLNLKNNRLQSLPA-----SISEL-KNLQYLDLSFNHFGP-----------IPLVIEVLTA  138 (1081)
T ss_pred             hHhhC---chhhhhhhcchhheeccchhhcCch-----hHHhh-hcccccccchhccCC-----------CchhHHhhhH
Confidence            55542   3444445555555555554444332     23333 444444554444432           3333344444


Q ss_pred             CcEEEccCCcCCcccchhhhcCCCCcEEEccCCccccccccccccccccccCCCCCChhccCCCCCCEEEccCCcCCCCC
Q 048351          288 LRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAGISDSI  367 (850)
Q Consensus       288 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~  367 (850)
                      ++.++.++|....    .++... ++.+++..|.+                 .+.++..+..++.  .|||.+|.+.. .
T Consensus       139 ~~~~~~s~N~~~~----~lg~~~-ik~~~l~~n~l-----------------~~~~~~~i~~l~~--~ldLr~N~~~~-~  193 (1081)
T KOG0618|consen  139 EEELAASNNEKIQ----RLGQTS-IKKLDLRLNVL-----------------GGSFLIDIYNLTH--QLDLRYNEMEV-L  193 (1081)
T ss_pred             HHHHhhhcchhhh----hhcccc-chhhhhhhhhc-----------------ccchhcchhhhhe--eeecccchhhh-h
Confidence            4444444441111    111111 44444444444                 3444445666666  79999998862 1


Q ss_pred             chhHhhcCcCCCEEecccCcCcccCChhhhhhccCCcCEEEccCCcCcccCCCC-CCCCcEEEccCCcCcCccccccccC
Q 048351          368 PDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSL-PSNAFYIDLSKNKFSGPISFLCSFS  446 (850)
Q Consensus       368 ~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~l~~N~l~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~~  446 (850)
                        .+ ..+++|+.+....|++....      ...++++.|+.++|.++...+.. +.+++++++++|++++.....+  .
T Consensus       194 --dl-s~~~~l~~l~c~rn~ls~l~------~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~--~  262 (1081)
T KOG0618|consen  194 --DL-SNLANLEVLHCERNQLSELE------ISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIG--A  262 (1081)
T ss_pred             --hh-hhccchhhhhhhhcccceEE------ecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHH--h
Confidence              11 22367888888888887432      12277888999999998554443 7789999999999998775544  4


Q ss_pred             CCCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCCCccccccCccEEeccCCccccCCch-hhcCCCC-cCe
Q 048351          447 GQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPS-LLKNFTH-LRV  524 (850)
Q Consensus       447 ~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~-L~~  524 (850)
                      +.+|+.++..+|+++ .+|..+....+|+.|++.+|.+. .+|...++++.|++|+|..|++. .+|+ .+.-... |+.
T Consensus       263 ~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~  339 (1081)
T KOG0618|consen  263 CANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNT  339 (1081)
T ss_pred             cccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHH
Confidence            589999999999996 78888888999999999999998 67778888999999999999998 4554 3333333 788


Q ss_pred             eccccccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccCcccCCccccCcccCccccccCcc
Q 048351          525 VALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSS  604 (850)
Q Consensus       525 L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~  604 (850)
                      |..+.|++. ..|..-....+.|+.|++.+|.++...-..+.+.+.|++|+|++|++......++.++..          
T Consensus       340 ln~s~n~l~-~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~----------  408 (1081)
T KOG0618|consen  340 LNVSSNKLS-TLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEE----------  408 (1081)
T ss_pred             Hhhhhcccc-ccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHH----------
Confidence            888889887 677544445678999999999999877667888999999999999997433334444443          


Q ss_pred             ccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCC
Q 048351          605 AITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYI  684 (850)
Q Consensus       605 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~i  684 (850)
                                                               |+.|+||+|+++ .+|..+..+..|++|...+|++.. .
T Consensus       409 -----------------------------------------LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~~-f  445 (1081)
T KOG0618|consen  409 -----------------------------------------LEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLLS-F  445 (1081)
T ss_pred             -----------------------------------------hHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCceee-c
Confidence                                                     488999999998 788999999999999999999984 5


Q ss_pred             CccccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCCc
Q 048351          685 TPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNN  727 (850)
Q Consensus       685 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~  727 (850)
                      | .+.++++|+.+|+|.|+|+...-.....-++|++||+++|.
T Consensus       446 P-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  446 P-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT  487 (1081)
T ss_pred             h-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence            5 89999999999999999985443333333899999999996

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.98  E-value=2.7e-35  Score=324.56  Aligned_cols=265  Identities=26%  Similarity=0.296  Sum_probs=172.4

Q ss_pred             CCcCEEEccCCcCcccCCCC---CCCCcEEEccCCcCcCccccccccCCCCccEEEccCCCCCCCCCcccccCCCCCEEE
Q 048351          402 LESPGIDISSNHLEGPSPSL---PSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILN  478 (850)
Q Consensus       402 ~~L~~L~l~~N~l~~~~~~~---~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  478 (850)
                      .+++.+++++|++++.+ .+   +.+++.++..+|.++.......  ..++|+.|.+..|.++ -+|.....+++|++|+
T Consensus       241 ~nl~~~dis~n~l~~lp-~wi~~~~nle~l~~n~N~l~~lp~ri~--~~~~L~~l~~~~nel~-yip~~le~~~sL~tLd  316 (1081)
T KOG0618|consen  241 LNLQYLDISHNNLSNLP-EWIGACANLEALNANHNRLVALPLRIS--RITSLVSLSAAYNELE-YIPPFLEGLKSLRTLD  316 (1081)
T ss_pred             ccceeeecchhhhhcch-HHHHhcccceEecccchhHHhhHHHHh--hhhhHHHHHhhhhhhh-hCCCcccccceeeeee
Confidence            34444555555554443 22   4455566666666543322222  2367788888888887 5666677788888888


Q ss_pred             cCCCcccccCCC-cccccc-CccEEeccCCccccCCchhhcCCCCcCeeccccccceeecchhHHhcCCCCCEEEccCCc
Q 048351          479 LANNNFSGKIPN-SCGYLQ-KMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNR  556 (850)
Q Consensus       479 Ls~N~l~~~~p~-~~~~l~-~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~  556 (850)
                      |..|++. ..|+ .+..+. .|..|+.+.|++....-..=...+.|+.|.+.+|.+++..-+-+. +...|++|+|++|+
T Consensus       317 L~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~-~~~hLKVLhLsyNr  394 (1081)
T KOG0618|consen  317 LQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLV-NFKHLKVLHLSYNR  394 (1081)
T ss_pred             ehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhc-cccceeeeeecccc
Confidence            8888887 3444 333333 367777777777632211223456688888888888754433333 57788888888888


Q ss_pred             cccccCcCcCCCCCcceeecccccCcccCCccccCcccCccccccCccccccccccCCCcccCccceEeeEEEEEecCcc
Q 048351          557 FYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSE  636 (850)
Q Consensus       557 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  636 (850)
                      +.......+.+++.|+.|+||+|+++ .+|.++.++..|                                         
T Consensus       395 L~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L-----------------------------------------  432 (1081)
T KOG0618|consen  395 LNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRL-----------------------------------------  432 (1081)
T ss_pred             cccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhh-----------------------------------------
Confidence            87444445677888888888888887 666777666655                                         


Q ss_pred             cccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCCCccccccCCCCeeeCCCCcCcccCcccccCCC
Q 048351          637 YEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVN  716 (850)
Q Consensus       637 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  716 (850)
                                ++|...+|++. ..| ++.++++|+.+|+|.|+++...-..-..-++|++|||++|.-....-..|..+.
T Consensus       433 ----------~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~l~~l~  500 (1081)
T KOG0618|consen  433 ----------HTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLVFDHKTLKVLK  500 (1081)
T ss_pred             ----------HHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcccccchhhhHHhh
Confidence                      56667777776 566 788888888888888888755332222237888999998875445556677777


Q ss_pred             CCCEEEcCCC
Q 048351          717 RLSVMDLSHN  726 (850)
Q Consensus       717 ~L~~L~ls~N  726 (850)
                      ++..+++.-|
T Consensus       501 ~l~~~~i~~~  510 (1081)
T KOG0618|consen  501 SLSQMDITLN  510 (1081)
T ss_pred             hhhheecccC
Confidence            7777777766

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=4.9e-34  Score=300.10  Aligned_cols=399  Identities=26%  Similarity=0.379  Sum_probs=254.8

Q ss_pred             cCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCCccccccCCCc
Q 048351          120 LKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAGNLDWISQLFSL  199 (850)
Q Consensus       120 ~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L  199 (850)
                      +-|+..+-.|+++|.|+|...|.....+++++.|.|....+. .+|+.++.|.+|++|.+++|++...            
T Consensus         4 gVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~v------------   70 (1255)
T KOG0444|consen    4 GVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLISV------------   70 (1255)
T ss_pred             cccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHhh------------
Confidence            345667778889999987778888888888888888888776 5788888888888888888775321            


Q ss_pred             cEEeCCCCCCCCCcchhhhhcCCCCCcEEEccCCCCCCCCCccccccccCCCCcccEEEccCCCCCCccchhhhcCCCCC
Q 048351          200 RYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIP  279 (850)
Q Consensus       200 ~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~ip  279 (850)
                                      ...+..+|.|+.+.+..|++                             ...         .+|
T Consensus        71 ----------------hGELs~Lp~LRsv~~R~N~L-----------------------------Kns---------GiP   96 (1255)
T KOG0444|consen   71 ----------------HGELSDLPRLRSVIVRDNNL-----------------------------KNS---------GIP   96 (1255)
T ss_pred             ----------------hhhhccchhhHHHhhhcccc-----------------------------ccC---------CCC
Confidence                            12233333333333333332                             211         033


Q ss_pred             CCCCCCCCCcEEEccCCcCCcccchhhhcCCCCcEEEccCCccccccccccccccccccCCCCCChhccCCCCCCEEEcc
Q 048351          280 DAPGPMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDIS  359 (850)
Q Consensus       280 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~~~l~~~~p~~l~~l~~L~~L~Ls  359 (850)
                      ..+..+..|..||||+|++. ..|..+..-+++-.|+|++|+|..+                                  
T Consensus        97 ~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetI----------------------------------  141 (1255)
T KOG0444|consen   97 TDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETI----------------------------------  141 (1255)
T ss_pred             chhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccC----------------------------------
Confidence            33334444444444444444 3444444444444444444444321                                  


Q ss_pred             CCcCCCCCchhHhhcCcCCCEEecccCcCcccCChhhhhhccCCcCEEEccCCcCcccCCCCCCCCcEEEccCCcCcCcc
Q 048351          360 SAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSLPSNAFYIDLSKNKFSGPI  439 (850)
Q Consensus       360 ~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~L~~L~Ls~n~l~~~~  439 (850)
                              |..++-.+..|-+||||+|++.. +|+.+ .                                         
T Consensus       142 --------Pn~lfinLtDLLfLDLS~NrLe~-LPPQ~-R-----------------------------------------  170 (1255)
T KOG0444|consen  142 --------PNSLFINLTDLLFLDLSNNRLEM-LPPQI-R-----------------------------------------  170 (1255)
T ss_pred             --------CchHHHhhHhHhhhccccchhhh-cCHHH-H-----------------------------------------
Confidence                    11111111223333333333331 11111 0                                         


Q ss_pred             ccccccCCCCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCccc-ccCCCccccccCccEEeccCCccccCCchhhcC
Q 048351          440 SFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFS-GKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKN  518 (850)
Q Consensus       440 ~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~  518 (850)
                            .+..|++|+|++|.+....-..+..+++|++|.+++.+-+ ..+|.++..+.+|..+|+|.|.+. .+|+.+.+
T Consensus       171 ------RL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~  243 (1255)
T KOG0444|consen  171 ------RLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYK  243 (1255)
T ss_pred             ------HHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhh
Confidence                  0123444444444443222222334556666666665432 257778888888888888888887 78888888


Q ss_pred             CCCcCeeccccccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccCcc-cCCccccCcccCcc
Q 048351          519 FTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISG-NIPKCFNNFTAMTQ  597 (850)
Q Consensus       519 l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~  597 (850)
                      +++|+.|+|++|+|+ .+..... ...+|++|++|.|+++ .+|.+++.++.|+.|.+.+|+++- -+|..++.+..|  
T Consensus       244 l~~LrrLNLS~N~it-eL~~~~~-~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~L--  318 (1255)
T KOG0444|consen  244 LRNLRRLNLSGNKIT-ELNMTEG-EWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQL--  318 (1255)
T ss_pred             hhhhheeccCcCcee-eeeccHH-HHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhh--
Confidence            889999999999888 6766666 3678999999999998 789999999999999999998862 355555554444  


Q ss_pred             ccccCccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCC
Q 048351          598 ERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSR  677 (850)
Q Consensus       598 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~  677 (850)
                                                                       +.+..++|++. ..|+.++.+..|+.|.|++
T Consensus       319 -------------------------------------------------evf~aanN~LE-lVPEglcRC~kL~kL~L~~  348 (1255)
T KOG0444|consen  319 -------------------------------------------------EVFHAANNKLE-LVPEGLCRCVKLQKLKLDH  348 (1255)
T ss_pred             -------------------------------------------------HHHHhhccccc-cCchhhhhhHHHHHhcccc
Confidence                                                             77888888887 8999999999999999999


Q ss_pred             CcCccCCCccccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCC-----cCcccCCC
Q 048351          678 NNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHN-----NLSGKIPT  734 (850)
Q Consensus       678 N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N-----~l~g~iP~  734 (850)
                      |++- ..|+.+.-++.|+.||+..|.---..|.--..-++|+.-|+..-     ++-|..|.
T Consensus       349 NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPPKP~da~~~lefYNIDFSLq~QlrlAG~~pa  409 (1255)
T KOG0444|consen  349 NRLI-TLPEAIHLLPDLKVLDLRENPNLVMPPKPNDARKKLEFYNIDFSLQHQLRLAGQMPA  409 (1255)
T ss_pred             ccee-echhhhhhcCCcceeeccCCcCccCCCCcchhhhcceeeecceehhhHHhhccCCcc
Confidence            9998 68999999999999999999755344443333356666555432     45565553

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=5.7e-34  Score=299.60  Aligned_cols=370  Identities=25%  Similarity=0.299  Sum_probs=278.7

Q ss_pred             CEEEEEcCCCCCcccchhhhhccCCCCCCc-ccccccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCC
Q 048351           83 HVKVLDLHGTGRVKVLDIQTRVMSGNASLR-GTLNPALLKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFS  161 (850)
Q Consensus        83 ~v~~l~L~~~~~l~~l~l~~~~~~~~~~l~-g~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~  161 (850)
                      -|.++|+++                 +.++ +.+|.....+++++.|.|...++.  ++|+.++.|.+|++|.+++|++.
T Consensus         8 FVrGvDfsg-----------------NDFsg~~FP~~v~qMt~~~WLkLnrt~L~--~vPeEL~~lqkLEHLs~~HN~L~   68 (1255)
T KOG0444|consen    8 FVRGVDFSG-----------------NDFSGDRFPHDVEQMTQMTWLKLNRTKLE--QVPEELSRLQKLEHLSMAHNQLI   68 (1255)
T ss_pred             eeecccccC-----------------CcCCCCcCchhHHHhhheeEEEechhhhh--hChHHHHHHhhhhhhhhhhhhhH
Confidence            477888887                 5677 578999999999999999999998  69999999999999999999988


Q ss_pred             CCCCcccCCCCCCcEEEccCCCCCCCCCccccccCCCccEEeCCCCCCCCCcchhhhhcCCCCCcEEEccCCCCCCCCCc
Q 048351          162 GPIPPLLGNLSRLQYLSLGYNKLLRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTI  241 (850)
Q Consensus       162 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~  241 (850)
                       .+-..+..|+.|+.+++..|++...+.++.+..+..|+.||||+|++..   .|..+..-+++-.|+|++|+|...+. 
T Consensus        69 -~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~E---vP~~LE~AKn~iVLNLS~N~IetIPn-  143 (1255)
T KOG0444|consen   69 -SVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLRE---VPTNLEYAKNSIVLNLSYNNIETIPN-  143 (1255)
T ss_pred             -hhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhh---cchhhhhhcCcEEEEcccCccccCCc-
Confidence             4556788999999999999999888888889999999999999999988   45677777777888888888776654 


Q ss_pred             cccccccCCCCcccEEEccCCCCCCccchhhhcCCCCCCCCCCCCCCcEEEccCCcCCcccchhhhcCCCCcEEEccCCc
Q 048351          242 HRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNS  321 (850)
Q Consensus       242 ~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~  321 (850)
                         .-+.++ +.|-.||||+|++..           +|..+..+..|++|+|++|.+...--..+..+++|+.|.+++.+
T Consensus       144 ---~lfinL-tDLLfLDLS~NrLe~-----------LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~Tq  208 (1255)
T KOG0444|consen  144 ---SLFINL-TDLLFLDLSNNRLEM-----------LPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQ  208 (1255)
T ss_pred             ---hHHHhh-HhHhhhccccchhhh-----------cCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhccccc
Confidence               333344 666777777777664           34445566677777777776654322334445556666666554


Q ss_pred             cccccccccccccccccCCCCCChhccCCCCCCEEEccCCcCCCCCchhHhhcCcCCCEEecccCcCcccCChhhhhhcc
Q 048351          322 LEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFI  401 (850)
Q Consensus       322 l~~~~~~~~~~~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~  401 (850)
                      -+-.                .+|..+..+.+|..+|+|.|.+. ..|+.+.+. ++|+.|+||+|+|+..-.        
T Consensus       209 RTl~----------------N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l-~~LrrLNLS~N~iteL~~--------  262 (1255)
T KOG0444|consen  209 RTLD----------------NIPTSLDDLHNLRDVDLSENNLP-IVPECLYKL-RNLRRLNLSGNKITELNM--------  262 (1255)
T ss_pred             chhh----------------cCCCchhhhhhhhhccccccCCC-cchHHHhhh-hhhheeccCcCceeeeec--------
Confidence            3211                34555566666666666666654 345554443 355555555555542100        


Q ss_pred             CCcCEEEccCCcCcccCCCCCCCCcEEEccCCcCcCccccccccCCCCccEEEccCCCCCCCCCcccccCCCCCEEEcCC
Q 048351          402 LESPGIDISSNHLEGPSPSLPSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLAN  481 (850)
Q Consensus       402 ~~L~~L~l~~N~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~  481 (850)
                                                             ...  ...+|++|++|+|+++ .+|++++.++.|+.|.+.+
T Consensus       263 ---------------------------------------~~~--~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~  300 (1255)
T KOG0444|consen  263 ---------------------------------------TEG--EWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANN  300 (1255)
T ss_pred             ---------------------------------------cHH--HHhhhhhhccccchhc-cchHHHhhhHHHHHHHhcc
Confidence                                                   000  1267899999999998 8899999999999999999


Q ss_pred             Ccccc-cCCCccccccCccEEeccCCccccCCchhhcCCCCcCeeccccccceeecchhHHhcCCCCCEEEccCCccccc
Q 048351          482 NNFSG-KIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGK  560 (850)
Q Consensus       482 N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~  560 (850)
                      |+++- -+|..++++..|+.+..++|.+. ..|+.+..|.+|+.|.|+.|++. ++|+.+- -++.|++||+..|.---.
T Consensus       301 NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIH-lL~~l~vLDlreNpnLVM  377 (1255)
T KOG0444|consen  301 NKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIH-LLPDLKVLDLRENPNLVM  377 (1255)
T ss_pred             CcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhh-hcCCcceeeccCCcCccC
Confidence            98762 47889999999999999999997 88999999999999999999998 8999887 589999999999875434


Q ss_pred             cC
Q 048351          561 IP  562 (850)
Q Consensus       561 ~p  562 (850)
                      .|
T Consensus       378 PP  379 (1255)
T KOG0444|consen  378 PP  379 (1255)
T ss_pred             CC
Confidence            44

>PLN03210 Resistant to P

Probab=99.88  E-value=2.9e-21  Score=239.89  Aligned_cols=139  Identities=18%  Similarity=0.199  Sum_probs=71.3

Q ss_pred             hhhcCCCCCcEEEccCCCCCCC--CCccccccccCCCCcccEEEccCCCCCCccchhhhcCCCCCCCCCCCCCCcEEEcc
Q 048351          217 QEVDKIPSLKTLYLEQCDLQLQ--PTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLS  294 (850)
Q Consensus       217 ~~l~~l~~L~~L~L~~n~l~~~--~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~ip~~l~~l~~L~~L~Ls  294 (850)
                      ..|..+++|+.|.+..+.....  .....+.++.....+|+.|++.++.+..           +|..+ ...+|+.|+++
T Consensus       552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~-----------lP~~f-~~~~L~~L~L~  619 (1153)
T PLN03210        552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRC-----------MPSNF-RPENLVKLQMQ  619 (1153)
T ss_pred             HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCC-----------CCCcC-CccCCcEEECc
Confidence            4566667777776655432110  0000112333333456666666665542           34444 34566666666


Q ss_pred             CCcCCcccchhhhcCCCCcEEEccCCccccccccccccccccccCCCCCChhccCCCCCCEEEccCCcCCCCCchhHhhc
Q 048351          295 DNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAGISDSIPDWFSDT  374 (850)
Q Consensus       295 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~  374 (850)
                      +|++. .++..+..+++|+.|+|+++...+.+|.                  +..+++|+.|++++|.....+|..+...
T Consensus       620 ~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~------------------ls~l~~Le~L~L~~c~~L~~lp~si~~L  680 (1153)
T PLN03210        620 GSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD------------------LSMATNLETLKLSDCSSLVELPSSIQYL  680 (1153)
T ss_pred             Ccccc-ccccccccCCCCCEEECCCCCCcCcCCc------------------cccCCcccEEEecCCCCccccchhhhcc
Confidence            66665 4555556666666666666543332221                  4445566666666655545555554332


Q ss_pred             CcCCCEEecccCc
Q 048351          375 SHKLADLNFSHNQ  387 (850)
Q Consensus       375 ~~~L~~L~Ls~N~  387 (850)
                       ++|+.|++++|.
T Consensus       681 -~~L~~L~L~~c~  692 (1153)
T PLN03210        681 -NKLEDLDMSRCE  692 (1153)
T ss_pred             -CCCCEEeCCCCC
Confidence             355555555543

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.88  E-value=3.3e-21  Score=239.39  Aligned_cols=341  Identities=21%  Similarity=0.229  Sum_probs=200.0

Q ss_pred             cccCCCCCCcEEEccCCCCCC-----CCCccccccC-CCccEEeCCCCCCCCCcchhhhhcCCCCCcEEEccCCCCCCCC
Q 048351          166 PLLGNLSRLQYLSLGYNKLLR-----AGNLDWISQL-FSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQP  239 (850)
Q Consensus       166 ~~l~~l~~L~~L~Ls~N~l~~-----~~~~~~l~~l-~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~  239 (850)
                      .+|.++++|+.|.+..+....     ...+..+..+ .+|+.|++.++.+...   |..+ ...+|++|++.+|.+....
T Consensus       552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~l---P~~f-~~~~L~~L~L~~s~l~~L~  627 (1153)
T PLN03210        552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCM---PSNF-RPENLVKLQMQGSKLEKLW  627 (1153)
T ss_pred             HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCC---CCcC-CccCCcEEECcCccccccc
Confidence            446666667766665543110     0111223333 2466666666655553   2223 3455666666665554432


Q ss_pred             CccccccccCCCCcccEEEccCCCCCCccchhhhcCCCCCCCCCCCCCCcEEEccCCcCCcccchhhhcCCCCcEEEccC
Q 048351          240 TIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRG  319 (850)
Q Consensus       240 ~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~  319 (850)
                      .     +...+ ++|+.|+|+++.....          +|. ++.+++|++|+|++|.....+|..++++++|+.|++++
T Consensus       628 ~-----~~~~l-~~Lk~L~Ls~~~~l~~----------ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~  690 (1153)
T PLN03210        628 D-----GVHSL-TGLRNIDLRGSKNLKE----------IPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSR  690 (1153)
T ss_pred             c-----ccccC-CCCCEEECCCCCCcCc----------CCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCC
Confidence            2     22233 5566666655442222          221 44455566666665554445555555666666666655


Q ss_pred             CccccccccccccccccccCCCCCChhccCCCCCCEEEccCCcCCCCCchhHhhcCcCCCEEecccCcCcccCChhhhhh
Q 048351          320 NSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSM  399 (850)
Q Consensus       320 N~l~~~~~~~~~~~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~  399 (850)
                      |...+.+|.                 .+ ++++|+.|++++|...+.+|..    ..+|+.|++++|.+. .+|..+   
T Consensus       691 c~~L~~Lp~-----------------~i-~l~sL~~L~Lsgc~~L~~~p~~----~~nL~~L~L~~n~i~-~lP~~~---  744 (1153)
T PLN03210        691 CENLEILPT-----------------GI-NLKSLYRLNLSGCSRLKSFPDI----STNISWLDLDETAIE-EFPSNL---  744 (1153)
T ss_pred             CCCcCccCC-----------------cC-CCCCCCEEeCCCCCCccccccc----cCCcCeeecCCCccc-cccccc---
Confidence            432222221                 11 3455555555555443333321    234555555555543 233222   


Q ss_pred             ccCCcCEEEccCCcCcccCCCCCCCCcEEEccCCcCc---Ccc---ccccccCCCCccEEEccCCCCCCCCCcccccCCC
Q 048351          400 FILESPGIDISSNHLEGPSPSLPSNAFYIDLSKNKFS---GPI---SFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNM  473 (850)
Q Consensus       400 ~~~~L~~L~l~~N~l~~~~~~~~~~L~~L~Ls~n~l~---~~~---~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~  473 (850)
                                           .+++|++|++.++...   +..   ........++|+.|++++|...+.+|..++++++
T Consensus       745 ---------------------~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~  803 (1153)
T PLN03210        745 ---------------------RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHK  803 (1153)
T ss_pred             ---------------------cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCC
Confidence                                 1334444444432211   100   0001112368999999999887788999999999


Q ss_pred             CCEEEcCCCcccccCCCccccccCccEEeccCCccccCCchhhcCCCCcCeeccccccceeecchhHHhcCCCCCEEEcc
Q 048351          474 LRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLR  553 (850)
Q Consensus       474 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~  553 (850)
                      |+.|++++|...+.+|..+ .+++|+.|++++|.....+|..   .++|+.|+|++|.++ .+|.++. .+++|++|+++
T Consensus       804 L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~-~l~~L~~L~L~  877 (1153)
T PLN03210        804 LEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIE-KFSNLSFLDMN  877 (1153)
T ss_pred             CCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHh-cCCCCCEEECC
Confidence            9999999986555777766 6889999999998766566653   367889999999998 8898887 69999999999


Q ss_pred             CCccccccCcCcCCCCCcceeeccccc
Q 048351          554 SNRFYGKIPFQLCHLADIQILDLSLNN  580 (850)
Q Consensus       554 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~  580 (850)
                      +|+--..+|..+..+++|+.+++++|.
T Consensus       878 ~C~~L~~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        878 GCNNLQRVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             CCCCcCccCcccccccCCCeeecCCCc
Confidence            855444677788888999999998875

syringae 6; Provisional

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.87  E-value=1.2e-21  Score=225.30  Aligned_cols=261  Identities=25%  Similarity=0.347  Sum_probs=152.3

Q ss_pred             CCEEEccCCcCCCCCchhHhhcCcCCCEEecccCcCcccCChhhhhhccCCcCEEEccCCcCcccCCCCCCCCcEEEccC
Q 048351          353 FSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSLPSNAFYIDLSK  432 (850)
Q Consensus       353 L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~L~~L~Ls~  432 (850)
                      -..|+++.+.++ .+|..+.   ++|+.|++++|+++. +|.                          .+++|++|++++
T Consensus       203 ~~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~-LP~--------------------------lp~~Lk~LdLs~  251 (788)
T PRK15387        203 NAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTS-LPA--------------------------LPPELRTLEVSG  251 (788)
T ss_pred             CcEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCCC-CCC--------------------------CCCCCcEEEecC
Confidence            445666666665 3444432   245555665555552 332                          334445555555


Q ss_pred             CcCcCccccccccCCCCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCCCccccccCccEEeccCCccccCC
Q 048351          433 NKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGEL  512 (850)
Q Consensus       433 n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~  512 (850)
                      |+++.. |..    .++|+.|++++|.++ .+|..   .++|+.|++++|+++ .+|.   .+++|+.|++++|++++ +
T Consensus       252 N~LtsL-P~l----p~sL~~L~Ls~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~~-L  317 (788)
T PRK15387        252 NQLTSL-PVL----PPGLLELSIFSNPLT-HLPAL---PSGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLAS-L  317 (788)
T ss_pred             CccCcc-cCc----ccccceeeccCCchh-hhhhc---hhhcCEEECcCCccc-cccc---cccccceeECCCCcccc-C
Confidence            554432 111    145666666666665 33332   244666666666666 3343   23566677777776663 3


Q ss_pred             chhhcCCCCcCeeccccccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccCcccCCccccCc
Q 048351          513 PSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNF  592 (850)
Q Consensus       513 p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l  592 (850)
                      |..   ..+|+.|++++|+++ .+|..    ..+|++|++++|++++ +|..   ..+|+.|++++|++++ +|...   
T Consensus       318 p~l---p~~L~~L~Ls~N~L~-~LP~l----p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l~---  381 (788)
T PRK15387        318 PAL---PSELCKLWAYNNQLT-SLPTL----PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPALP---  381 (788)
T ss_pred             CCC---cccccccccccCccc-ccccc----ccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Ccccc---
Confidence            432   234666677777776 46631    2467777777777763 4432   2456677777777763 33211   


Q ss_pred             ccCccccccCccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCe
Q 048351          593 TAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIG  672 (850)
Q Consensus       593 ~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  672 (850)
                                                                         ..|+.|++++|+|++ +|..   .++|+.
T Consensus       382 ---------------------------------------------------~~L~~LdLs~N~Lt~-LP~l---~s~L~~  406 (788)
T PRK15387        382 ---------------------------------------------------SGLKELIVSGNRLTS-LPVL---PSELKE  406 (788)
T ss_pred             ---------------------------------------------------cccceEEecCCcccC-CCCc---ccCCCE
Confidence                                                               123677778887774 4433   246777


Q ss_pred             EecCCCcCccCCCccccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCCcCcccCCC
Q 048351          673 LNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGKIPT  734 (850)
Q Consensus       673 L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~  734 (850)
                      |++++|++++ +|...   .+|+.|++++|+|+ .+|..+.+++.|++|++++|+|+|.+|.
T Consensus       407 LdLS~N~Lss-IP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~  463 (788)
T PRK15387        407 LMVSGNRLTS-LPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ  463 (788)
T ss_pred             EEccCCcCCC-CCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence            8888888774 55432   45677888888887 6777777788888888888888877664

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.87  E-value=8e-22  Score=226.65  Aligned_cols=260  Identities=25%  Similarity=0.344  Sum_probs=152.6

Q ss_pred             cccccCCCCCChhccCCCCCCEEEccCCcCCCCCchhHhhcCcCCCEEecccCcCcccCChhhhhhccCCcCEEEccCCc
Q 048351          334 FSYLKMGPHFPKWLQTQKHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNH  413 (850)
Q Consensus       334 l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~l~~N~  413 (850)
                      ++.+.++ .+|..+.  ++|+.|++.+|+++. +|.    ..++|++|++++|+++. +|...     .+|+.|++++|.
T Consensus       208 Ls~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~-LP~----lp~~Lk~LdLs~N~Lts-LP~lp-----~sL~~L~Ls~N~  273 (788)
T PRK15387        208 VGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA----LPPELRTLEVSGNQLTS-LPVLP-----PGLLELSIFSNP  273 (788)
T ss_pred             cCCCCCC-cCCcchh--cCCCEEEccCCcCCC-CCC----CCCCCcEEEecCCccCc-ccCcc-----cccceeeccCCc
Confidence            3455555 5777665  489999999999986 443    24689999999999984 45433     566677777777


Q ss_pred             CcccCCCCCCCCcEEEccCCcCcCccccccccCCCCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCCCccc
Q 048351          414 LEGPSPSLPSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCG  493 (850)
Q Consensus       414 l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  493 (850)
                      ++.. |..+.+                         |+.|++++|+++ .+|.   ..++|+.|++++|++++ +|..  
T Consensus       274 L~~L-p~lp~~-------------------------L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~~-Lp~l--  320 (788)
T PRK15387        274 LTHL-PALPSG-------------------------LCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLAS-LPAL--  320 (788)
T ss_pred             hhhh-hhchhh-------------------------cCEEECcCCccc-cccc---cccccceeECCCCcccc-CCCC--
Confidence            6642 223344                         445555555554 2232   12445555555555553 2321  


Q ss_pred             cccCccEEeccCCccccCCchhhcCCCCcCeeccccccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcce
Q 048351          494 YLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQI  573 (850)
Q Consensus       494 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~  573 (850)
                       ..+|+.|++++|++++ +|..   ..+|+.|++++|+++ .+|..    ..+|+.|++++|++++ +|..   ..+|+.
T Consensus       321 -p~~L~~L~Ls~N~L~~-LP~l---p~~Lq~LdLS~N~Ls-~LP~l----p~~L~~L~Ls~N~L~~-LP~l---~~~L~~  386 (788)
T PRK15387        321 -PSELCKLWAYNNQLTS-LPTL---PSGLQELSVSDNQLA-SLPTL----PSELYKLWAYNNRLTS-LPAL---PSGLKE  386 (788)
T ss_pred             -cccccccccccCcccc-cccc---ccccceEecCCCccC-CCCCC----Ccccceehhhcccccc-Cccc---ccccce
Confidence             1235555555555552 3321   135566666666665 45532    2355666666666653 4432   245666


Q ss_pred             eecccccCcccCCccccCcccCccccccCccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCC
Q 048351          574 LDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSS  653 (850)
Q Consensus       574 L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~  653 (850)
                      |++++|+|++ +|...                                                      +.|+.|++++
T Consensus       387 LdLs~N~Lt~-LP~l~------------------------------------------------------s~L~~LdLS~  411 (788)
T PRK15387        387 LIVSGNRLTS-LPVLP------------------------------------------------------SELKELMVSG  411 (788)
T ss_pred             EEecCCcccC-CCCcc------------------------------------------------------cCCCEEEccC
Confidence            7777776653 33211                                                      1126677777


Q ss_pred             CCCCCCChhhhhccccCCeEecCCCcCccCCCccccccCCCCeeeCCCCcCcccCcccccC
Q 048351          654 NKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQ  714 (850)
Q Consensus       654 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~  714 (850)
                      |++++ +|...   .+|+.|++++|+++ .+|..+.++++|+.|+|++|+|++.+|..+..
T Consensus       412 N~Lss-IP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~  467 (788)
T PRK15387        412 NRLTS-LPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALRE  467 (788)
T ss_pred             CcCCC-CCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHH
Confidence            77763 45432   34666777777777 56777777777777777777777777666633

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.86  E-value=2.5e-23  Score=209.72  Aligned_cols=90  Identities=24%  Similarity=0.365  Sum_probs=53.6

Q ss_pred             ccccCCCCCEEEcCCCcccccCCCccccccCccEEeccCCccccCCchhhcCCCCcCeeccccccceeecchhHHhcCCC
Q 048351          467 CWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLN  546 (850)
Q Consensus       467 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~  546 (850)
                      +|..+++|+.|+|++|+++++-+.+|.+...+++|.|..|++...-...|.++..|+.|+|++|+|+ .+....|+.+.+
T Consensus       269 cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it-~~~~~aF~~~~~  347 (498)
T KOG4237|consen  269 CFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQIT-TVAPGAFQTLFS  347 (498)
T ss_pred             HHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeE-EEecccccccce
Confidence            4566666666666666666665666666666666666666665444455666666666666666666 343344445556


Q ss_pred             CCEEEccCCcc
Q 048351          547 LVVLDLRSNRF  557 (850)
Q Consensus       547 L~~L~L~~N~l  557 (850)
                      |.+|++-.|.+
T Consensus       348 l~~l~l~~Np~  358 (498)
T KOG4237|consen  348 LSTLNLLSNPF  358 (498)
T ss_pred             eeeeehccCcc
Confidence            66666655554

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.84  E-value=1.7e-22  Score=203.86  Aligned_cols=277  Identities=22%  Similarity=0.200  Sum_probs=147.5

Q ss_pred             CccEEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCCCccccccCccEEeccC-CccccCCchhhcCCCCcCeecc
Q 048351          449 NLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHH-NNFSGELPSLLKNFTHLRVVAL  527 (850)
Q Consensus       449 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~l~~l~~L~~L~L  527 (850)
                      .-+.++|..|+|+...|.+|+.+++|+.|||++|.|+.+-|++|.++.+|.+|-+.+ |+|+......|.++.+|+.|.+
T Consensus        68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll  147 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL  147 (498)
T ss_pred             cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence            456677777777766666777777777777777777766777777777666665554 7777555566777777777777


Q ss_pred             ccccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccCc------------ccCCccccCcccC
Q 048351          528 EENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNIS------------GNIPKCFNNFTAM  595 (850)
Q Consensus       528 ~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~------------~~~p~~~~~l~~L  595 (850)
                      .-|++. .++...+..+++|..|.+.+|.+...--..|..+.+++.+.+..|.+-            ...|..++.....
T Consensus       148 Nan~i~-Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~  226 (498)
T KOG4237|consen  148 NANHIN-CIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCV  226 (498)
T ss_pred             Chhhhc-chhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceec
Confidence            777776 566555556777777777777776443346667777777777776632            1112222222221


Q ss_pred             ccccccCccccccccccC-CCcccCccceE-eeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeE
Q 048351          596 TQERSYNSSAITFSYAVP-SRTTMLPVHIF-FDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGL  673 (850)
Q Consensus       596 ~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  673 (850)
                      .....+............ .....++.+.. .+.+.   .......++.+++|+.|+|++|+++++-+.+|.++..+++|
T Consensus       227 ~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d---~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL  303 (498)
T KOG4237|consen  227 SPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPD---SICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQEL  303 (498)
T ss_pred             chHHHHHHHhcccchhhhhhhHHhHHHhhccccCcC---CcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhh
Confidence            111111000000000000 00000000000 00000   00011123455555555555555555555555555555555


Q ss_pred             ecCCCcCccCCCccccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCCcCc
Q 048351          674 NLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLS  729 (850)
Q Consensus       674 ~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~  729 (850)
                      .|..|++...-...|.++..|+.|+|.+|+|+..-|..|..+.+|.+|+|-.|++.
T Consensus       304 ~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~  359 (498)
T KOG4237|consen  304 YLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN  359 (498)
T ss_pred             hcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence            55555555444455555555555555555555555555555555555555555554

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.81  E-value=1.1e-19  Score=210.77  Aligned_cols=181  Identities=23%  Similarity=0.342  Sum_probs=111.6

Q ss_pred             CCCEEecccCcCcccCChhhhhhccCCcCEEEccCCcCcccCCCCCCCCcEEEccCCcCcCccccccccCCCCccEEEcc
Q 048351          377 KLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSLPSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLS  456 (850)
Q Consensus       377 ~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls  456 (850)
                      +...|+++++.++ .+|..+   . ..++.|++++|+++..+...+.+|++|++++|+++...... .   .+|+.|+|+
T Consensus       179 ~~~~L~L~~~~Lt-sLP~~I---p-~~L~~L~Ls~N~LtsLP~~l~~nL~~L~Ls~N~LtsLP~~l-~---~~L~~L~Ls  249 (754)
T PRK15370        179 NKTELRLKILGLT-TIPACI---P-EQITTLILDNNELKSLPENLQGNIKTLYANSNQLTSIPATL-P---DTIQEMELS  249 (754)
T ss_pred             CceEEEeCCCCcC-cCCccc---c-cCCcEEEecCCCCCcCChhhccCCCEEECCCCccccCChhh-h---ccccEEECc
Confidence            5678888888887 355433   1 56777888888877655545667777777777766432211 1   357777777


Q ss_pred             CCCCCCCCCcccccCCCCCEEEcCCCcccccCCCccccccCccEEeccCCccccCCchhhcCCCCcCeeccccccceeec
Q 048351          457 SNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNI  536 (850)
Q Consensus       457 ~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~i  536 (850)
                      +|.+. .+|..+.  ++|+.|++++|+++ .+|..+.  ++|+.|++++|++++ +|..+.  ++|+.|++++|+++ .+
T Consensus       250 ~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt-~L  319 (754)
T PRK15370        250 INRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLT-AL  319 (754)
T ss_pred             CCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCccc-cC
Confidence            77776 4555443  46777777777776 3555443  467777777777663 444332  35666777777766 45


Q ss_pred             chhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccCc
Q 048351          537 PAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNIS  582 (850)
Q Consensus       537 p~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  582 (850)
                      |..+   .++|++|++++|.+++ +|..+.  ++|+.|++++|+|+
T Consensus       320 P~~l---~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~  359 (754)
T PRK15370        320 PETL---PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT  359 (754)
T ss_pred             Cccc---cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC
Confidence            5443   2466666666666663 454442  46666666666665

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.81  E-value=8.2e-20  Score=211.80  Aligned_cols=292  Identities=22%  Similarity=0.345  Sum_probs=196.7

Q ss_pred             CCCCEEEccCCcCCCCCchhHhhcCcCCCEEecccCcCcccCChhhhhhccCCcCEEEccCCcCcccCCCCCCCCcEEEc
Q 048351          351 KHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSLPSNAFYIDL  430 (850)
Q Consensus       351 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~L~~L~L  430 (850)
                      .+...|++++++++. +|..+.   +.++.|++++|+++. +|..+   . .+|+.|++++|+++..+...+.+|+.|++
T Consensus       178 ~~~~~L~L~~~~Lts-LP~~Ip---~~L~~L~Ls~N~Lts-LP~~l---~-~nL~~L~Ls~N~LtsLP~~l~~~L~~L~L  248 (754)
T PRK15370        178 NNKTELRLKILGLTT-IPACIP---EQITTLILDNNELKS-LPENL---Q-GNIKTLYANSNQLTSIPATLPDTIQEMEL  248 (754)
T ss_pred             cCceEEEeCCCCcCc-CCcccc---cCCcEEEecCCCCCc-CChhh---c-cCCCEEECCCCccccCChhhhccccEEEC
Confidence            456788898888875 555442   468899999998884 55433   1 57888999999988655455678899999


Q ss_pred             cCCcCcCccccccccCCCCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCCCccccccCccEEeccCCcccc
Q 048351          431 SKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSG  510 (850)
Q Consensus       431 s~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  510 (850)
                      ++|.+... |....   .+|+.|++++|+++ .+|..+.  ++|+.|++++|++++ +|..+.  ++|+.|++++|+++.
T Consensus       249 s~N~L~~L-P~~l~---s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~  318 (754)
T PRK15370        249 SINRITEL-PERLP---SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTA  318 (754)
T ss_pred             cCCccCcC-ChhHh---CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCcccc
Confidence            99988743 32221   57899999999888 4666553  579999999998884 555442  478889999999884


Q ss_pred             CCchhhcCCCCcCeeccccccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccCcccCCcccc
Q 048351          511 ELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFN  590 (850)
Q Consensus       511 ~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~  590 (850)
                       +|..+.  ++|+.|++++|.++ .+|..+   .++|+.|++++|+++ .+|..+  .++|+.|++++|+++ .+|..+.
T Consensus       319 -LP~~l~--~sL~~L~Ls~N~Lt-~LP~~l---~~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt-~LP~~l~  387 (754)
T PRK15370        319 -LPETLP--PGLKTLEAGENALT-SLPASL---PPELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALT-NLPENLP  387 (754)
T ss_pred             -CCcccc--ccceeccccCCccc-cCChhh---cCcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCC-CCCHhHH
Confidence             555442  68889999999988 688765   368999999999887 466655  367888888888887 3443321


Q ss_pred             CcccCccccccCccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhh----c
Q 048351          591 NFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIM----D  666 (850)
Q Consensus       591 ~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~----~  666 (850)
                                                                           ..|+.|++++|+++ .+|..+.    .
T Consensus       388 -----------------------------------------------------~sL~~LdLs~N~L~-~LP~sl~~~~~~  413 (754)
T PRK15370        388 -----------------------------------------------------AALQIMQASRNNLV-RLPESLPHFRGE  413 (754)
T ss_pred             -----------------------------------------------------HHHHHHhhccCCcc-cCchhHHHHhhc
Confidence                                                                 12367888888887 4455443    3


Q ss_pred             cccCCeEecCCCcCccCCCccccccCCCCeeeCCCCcCcc-cCcccccCCCCCCEEEcCCCcCcccCC
Q 048351          667 LVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSG-GIPSSLSQVNRLSVMDLSHNNLSGKIP  733 (850)
Q Consensus       667 l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~ls~N~l~g~iP  733 (850)
                      ++.+..|++.+|.++.      ..+.+|+.| ++.+...| .++..+.....++....-.+...+-+|
T Consensus       414 ~~~l~~L~L~~Npls~------~tl~~L~~L-l~s~~~~gp~i~~~~~~~~~l~~~~~l~~a~~~Wl~  474 (754)
T PRK15370        414 GPQPTRIIVEYNPFSE------RTIQNMQRL-MSSVGYQGPRVLFAMGDFSIVRVTRPLHQAVQGWLT  474 (754)
T ss_pred             CCCccEEEeeCCCccH------HHHHHHHHh-hhcccccCCcccccccccccccccchHHHHHhccCC
Confidence            4677788888888762      233444445 34444433 334444444444443333444444444

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.72  E-value=1.3e-18  Score=188.11  Aligned_cols=213  Identities=21%  Similarity=0.262  Sum_probs=108.1

Q ss_pred             cccCCCCCEEEcCCCcccccCCCccccccC---ccEEeccCCcccc----CCchhhcCC-CCcCeeccccccceeec---
Q 048351          468 WLQFNMLRILNLANNNFSGKIPNSCGYLQK---MLTLSLHHNNFSG----ELPSLLKNF-THLRVVALEENSISGNI---  536 (850)
Q Consensus       468 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~---L~~L~Ls~N~l~~----~~p~~l~~l-~~L~~L~L~~N~l~~~i---  536 (850)
                      +..+++|+.|++++|.+.+..+..+..+..   |++|++++|++++    .+...+..+ ++|+.|++++|.+++..   
T Consensus        77 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~  156 (319)
T cd00116          77 LTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEA  156 (319)
T ss_pred             HHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHH
Confidence            344445555555555554333333333333   5555555555542    122233444 55666666666555322   


Q ss_pred             -chhHHhcCCCCCEEEccCCccccc----cCcCcCCCCCcceeecccccCcccCCccccCcccCccccccCccccccccc
Q 048351          537 -PAWIGESLLNLVVLDLRSNRFYGK----IPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYA  611 (850)
Q Consensus       537 -p~~~~~~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~  611 (850)
                       +..+. .+++|++|++++|.+++.    ++..+...++|+.|++++|.+++.....+..                    
T Consensus       157 ~~~~~~-~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~--------------------  215 (319)
T cd00116         157 LAKALR-ANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAE--------------------  215 (319)
T ss_pred             HHHHHH-hCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHH--------------------
Confidence             22222 345566666666666532    2223334456666666666665322111100                    


Q ss_pred             cCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhc-----cccCCeEecCCCcCcc----
Q 048351          612 VPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMD-----LVGLIGLNLSRNNLTG----  682 (850)
Q Consensus       612 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~-----l~~L~~L~Ls~N~l~~----  682 (850)
                                                 ....++.|+.|++++|.+++.....+..     .+.|+.|++++|.++.    
T Consensus       216 ---------------------------~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~  268 (319)
T cd00116         216 ---------------------------TLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAK  268 (319)
T ss_pred             ---------------------------HhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHH
Confidence                                       0112234466777777766533333332     2577777777777752    


Q ss_pred             CCCccccccCCCCeeeCCCCcCccc----CcccccCC-CCCCEEEcCCCcC
Q 048351          683 YITPKIGQLQSLDFLDLSRNQFSGG----IPSSLSQV-NRLSVMDLSHNNL  728 (850)
Q Consensus       683 ~ip~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l-~~L~~L~ls~N~l  728 (850)
                      .+...+..+++|+.+|+++|.++..    ....+... +.|+++|+.+|++
T Consensus       269 ~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         269 DLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF  319 (319)
T ss_pred             HHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence            1233455556777777777777744    33334444 5677777777654

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.71  E-value=1.6e-18  Score=187.47  Aligned_cols=84  Identities=23%  Similarity=0.213  Sum_probs=45.3

Q ss_pred             EEeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCC----CCcccCCCCCCcEEEccCCCCCC-CC----CccccccCC
Q 048351          127 HLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGP----IPPLLGNLSRLQYLSLGYNKLLR-AG----NLDWISQLF  197 (850)
Q Consensus       127 ~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~-~~----~~~~l~~l~  197 (850)
                      .|+|..+.+++...+..+..+++|++|+++++.+++.    ++..+...++|++|+++++.+.. ..    ....+..++
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~   81 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC   81 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence            3566666666444555555566677777776666432    34445556666666666665321 00    012244455


Q ss_pred             CccEEeCCCCCCC
Q 048351          198 SLRYLDLSSCNLS  210 (850)
Q Consensus       198 ~L~~L~Ls~n~l~  210 (850)
                      +|++|++++|.+.
T Consensus        82 ~L~~L~l~~~~~~   94 (319)
T cd00116          82 GLQELDLSDNALG   94 (319)
T ss_pred             ceeEEEccCCCCC
Confidence            5666666655554

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.66  E-value=2.1e-18  Score=154.59  Aligned_cols=85  Identities=28%  Similarity=0.539  Sum_probs=47.3

Q ss_pred             cccCccEEeccCCccccCCchhhcCCCCcCeeccccccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcce
Q 048351          494 YLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQI  573 (850)
Q Consensus       494 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~  573 (850)
                      .+...+.|.+++|+++ .+|..+..+.+|+.|++.+|++. .+|..+. .+++|+.|+++-|++. ..|..|+.++.|+.
T Consensus        31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~is-sl~klr~lnvgmnrl~-~lprgfgs~p~lev  106 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSIS-SLPKLRILNVGMNRLN-ILPRGFGSFPALEV  106 (264)
T ss_pred             chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhh-hchhhhheecchhhhh-cCccccCCCchhhh
Confidence            3445555556666655 44444555555555555555555 5555554 3555555555555554 45555555555555


Q ss_pred             eecccccCc
Q 048351          574 LDLSLNNIS  582 (850)
Q Consensus       574 L~Ls~N~l~  582 (850)
                      |||++|++.
T Consensus       107 ldltynnl~  115 (264)
T KOG0617|consen  107 LDLTYNNLN  115 (264)
T ss_pred             hhccccccc
Confidence            555555554

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.65  E-value=4.8e-18  Score=152.36  Aligned_cols=163  Identities=26%  Similarity=0.450  Sum_probs=100.8

Q ss_pred             cCCCCCEEEcCCCcccccCCCccccccCccEEeccCCccccCCchhhcCCCCcCeeccccccceeecchhHHhcCCCCCE
Q 048351          470 QFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVV  549 (850)
Q Consensus       470 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~  549 (850)
                      ++..++.|.|++|+++ .+|..+..+.+|+.|++++|+++ .+|..++.+++|+.|+++-|++. .+|..++ .++.|++
T Consensus        31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfg-s~p~lev  106 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFG-SFPALEV  106 (264)
T ss_pred             chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccC-CCchhhh
Confidence            3445555566666665 45555666666666666666665 55666666666666666666665 6666666 4666777


Q ss_pred             EEccCCcccc-ccCcCcCCCCCcceeecccccCcccCCccccCcccCccccccCccccccccccCCCcccCccceEeeEE
Q 048351          550 LDLRSNRFYG-KIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIV  628 (850)
Q Consensus       550 L~L~~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  628 (850)
                      ||+.+|++.. .+|..|..++.|+.|.|++|.+. .+|..++++++|                                 
T Consensus       107 ldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~l---------------------------------  152 (264)
T KOG0617|consen  107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNL---------------------------------  152 (264)
T ss_pred             hhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcce---------------------------------
Confidence            7777666642 45666667777777777777775 445544444444                                 


Q ss_pred             EEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCCCccccc
Q 048351          629 LLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQ  690 (850)
Q Consensus       629 ~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~  690 (850)
                                        +.|.+..|.+- ..|.+++.++.|++|.+.+|+++ .+|+.+++
T Consensus       153 ------------------qil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~  194 (264)
T KOG0617|consen  153 ------------------QILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELAN  194 (264)
T ss_pred             ------------------eEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhh
Confidence                              45555555554 56666666666666666666666 45554443

>PLN03150 hypothetical protein; Provisional

Probab=99.59  E-value=5.4e-15  Score=171.59  Aligned_cols=117  Identities=37%  Similarity=0.665  Sum_probs=105.2

Q ss_pred             ccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCCCccccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCC
Q 048351          646 VKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSH  725 (850)
Q Consensus       646 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~  725 (850)
                      ++.|+|++|.++|.+|..++.+++|+.|+|++|+++|.+|..++.+++|+.|||++|+++|.+|..+.++++|++||+++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            58899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcCcccCCCCC--cCCCcCccccCCCCCCCCCCCCCCCC
Q 048351          726 NNLSGKIPTGT--QLQSFNASVYDGNPELCGLPLPSKCW  762 (850)
Q Consensus       726 N~l~g~iP~~~--~~~~~~~~~~~gN~~lc~~~~~~~c~  762 (850)
                      |+++|.+|..-  .+.......+.||+.+|+.|....|.
T Consensus       500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~  538 (623)
T PLN03150        500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG  538 (623)
T ss_pred             CcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence            99999999752  12233455689999999977555664

>PLN03150 hypothetical protein; Provisional

Probab=99.53  E-value=4.2e-14  Score=164.21  Aligned_cols=128  Identities=35%  Similarity=0.550  Sum_probs=107.8

Q ss_pred             CCCcHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCc----cccceEecC--CC--CCEEEEEcCCCCCcccchhhhhc
Q 048351           33 IRCIEEERKALLKFKQGLVDEFGFLSSWGSEGEKKDCC----NWRGVRCSN--QT--GHVKVLDLHGTGRVKVLDIQTRV  104 (850)
Q Consensus        33 ~~~~~~~~~~Ll~~k~~~~~~~~~l~~W~~~~~~~~~c----~w~gv~C~~--~~--~~v~~l~L~~~~~l~~l~l~~~~  104 (850)
                      ..+.++|.+||+++|+++.++..  .+|.    +..||    .|.||+|+.  ..  .+|+.++|++             
T Consensus       367 ~~t~~~~~~aL~~~k~~~~~~~~--~~W~----g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~-------------  427 (623)
T PLN03150        367 SKTLLEEVSALQTLKSSLGLPLR--FGWN----GDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDN-------------  427 (623)
T ss_pred             cccCchHHHHHHHHHHhcCCccc--CCCC----CCCCCCcccccccceeeccCCCCceEEEEEECCC-------------
Confidence            35677899999999999876532  4795    33443    799999952  22  2588999987             


Q ss_pred             cCCCCCCcccccccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCcccCCCCCCcEEEccCCCC
Q 048351          105 MSGNASLRGTLNPALLKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKL  184 (850)
Q Consensus       105 ~~~~~~l~g~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l  184 (850)
                          +.+.|.+|++++.+++|++|+|++|.++|. +|..++.+++|++|+|++|+++|.+|..++++++|++|+|++|++
T Consensus       428 ----n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l  502 (623)
T PLN03150        428 ----QGLRGFIPNDISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSL  502 (623)
T ss_pred             ----CCccccCCHHHhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcc
Confidence                588999999999999999999999999986 999999999999999999999999999999999999999988875

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.34  E-value=8.5e-14  Score=147.69  Aligned_cols=195  Identities=25%  Similarity=0.453  Sum_probs=144.8

Q ss_pred             CCCCCEEEcCCCcccccCCCccccccCccEEeccCCccccCCchhhcCCCCcCeeccccccceeecchhHHhcCCCCCEE
Q 048351          471 FNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVL  550 (850)
Q Consensus       471 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L  550 (850)
                      +.--...|++.|++. ++|..+..+..|+.+.|..|.+. .+|..+.++..|+++||+.|+++ .+|..++ .+ -|+.|
T Consensus        74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC-~l-pLkvl  148 (722)
T KOG0532|consen   74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLC-DL-PLKVL  148 (722)
T ss_pred             ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhh-cC-cceeE
Confidence            444557788888887 77888888888888888888887 77888888888888888888887 7888877 34 48888


Q ss_pred             EccCCccccccCcCcCCCCCcceeecccccCcccCCccccCcccCccccccCccccccccccCCCcccCccceEeeEEEE
Q 048351          551 DLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLL  630 (850)
Q Consensus       551 ~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  630 (850)
                      -+++|+++ .+|..++.+..|..||.+.|.+. .+|..++++.+|                                   
T Consensus       149 i~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~sl-----------------------------------  191 (722)
T KOG0532|consen  149 IVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSL-----------------------------------  191 (722)
T ss_pred             EEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHH-----------------------------------
Confidence            88888887 67777888888888888888886 455555444444                                   


Q ss_pred             EecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCCCccccccCCCCeeeCCCCcCcccCcc
Q 048351          631 TWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPS  710 (850)
Q Consensus       631 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~  710 (850)
                                      +.|.+..|++. ..|+++..|+ |..||+|+|+++ .||-.|.+|+.|++|-|.+|.|+ ..|.
T Consensus       192 ----------------r~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPA  251 (722)
T KOG0532|consen  192 ----------------RDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPA  251 (722)
T ss_pred             ----------------HHHHHhhhhhh-hCCHHHhCCc-eeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChH
Confidence                            66777777777 5667777554 777888888888 67888888888888888888887 4444


Q ss_pred             ccc---CCCCCCEEEcCCCc
Q 048351          711 SLS---QVNRLSVMDLSHNN  727 (850)
Q Consensus       711 ~l~---~l~~L~~L~ls~N~  727 (850)
                      .+.   ...-.++|+..-.+
T Consensus       252 qIC~kGkVHIFKyL~~qA~q  271 (722)
T KOG0532|consen  252 QICEKGKVHIFKYLSTQACQ  271 (722)
T ss_pred             HHHhccceeeeeeecchhcc
Confidence            432   23345666666553

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.30  E-value=1.6e-13  Score=145.56  Aligned_cols=196  Identities=28%  Similarity=0.428  Sum_probs=157.7

Q ss_pred             CCCCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCCCccccccCccEEeccCCccccCCchhhcCCCCcCee
Q 048351          446 SGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVV  525 (850)
Q Consensus       446 ~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  525 (850)
                      .+..-...|++.|++. .+|..++.+..|+.+.|..|.+. .+|..+..+..|+++||+.|+++ .+|..+..|+ |+.|
T Consensus        73 ~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvl  148 (722)
T KOG0532|consen   73 DLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVL  148 (722)
T ss_pred             cccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeE
Confidence            3455567889999988 78888888888999999999887 78888899999999999999998 6787777775 8899


Q ss_pred             ccccccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccCcccCCccccCcccCccccccCccc
Q 048351          526 ALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSA  605 (850)
Q Consensus       526 ~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~  605 (850)
                      .+++|+++ .+|..++ .+..|..||.+.|.+. .+|..++.+.+|+.|.+..|++. .+|+.+..++            
T Consensus       149 i~sNNkl~-~lp~~ig-~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp------------  212 (722)
T KOG0532|consen  149 IVSNNKLT-SLPEEIG-LLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP------------  212 (722)
T ss_pred             EEecCccc-cCCcccc-cchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc------------
Confidence            99999997 8998888 7888999999999987 67778889999999999999887 4454443222            


Q ss_pred             cccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCCC
Q 048351          606 ITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYIT  685 (850)
Q Consensus       606 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip  685 (850)
                                                              |..||+|+|+++ .+|-.|.+|+.|++|-|.+|.++. .|
T Consensus       213 ----------------------------------------Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqS-PP  250 (722)
T KOG0532|consen  213 ----------------------------------------LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQS-PP  250 (722)
T ss_pred             ----------------------------------------eeeeecccCcee-ecchhhhhhhhheeeeeccCCCCC-Ch
Confidence                                                    267999999998 889999999999999999999983 55


Q ss_pred             ccc---cccCCCCeeeCCCCc
Q 048351          686 PKI---GQLQSLDFLDLSRNQ  703 (850)
Q Consensus       686 ~~l---~~l~~L~~L~Ls~N~  703 (850)
                      ..+   +...--++|+..-++
T Consensus       251 AqIC~kGkVHIFKyL~~qA~q  271 (722)
T KOG0532|consen  251 AQICEKGKVHIFKYLSTQACQ  271 (722)
T ss_pred             HHHHhccceeeeeeecchhcc
Confidence            444   333445677776664

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.25  E-value=8.2e-12  Score=139.00  Aligned_cols=199  Identities=35%  Similarity=0.538  Sum_probs=109.5

Q ss_pred             EEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCCCcccccc-CccEEeccCCccccCCchhhcCCCCcCeeccccc
Q 048351          452 YLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQ-KMLTLSLHHNNFSGELPSLLKNFTHLRVVALEEN  530 (850)
Q Consensus       452 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N  530 (850)
                      .++++.|.+...+ .....++.++.|++.+|.++ .+|....... +|+.|++++|.+. .+|..+..+++|+.|++++|
T Consensus        97 ~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N  173 (394)
T COG4886          97 SLDLNLNRLRSNI-SELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN  173 (394)
T ss_pred             eeeccccccccCc-hhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence            4566666553222 22334456667777777666 4444455553 6777777777666 45455666777777777777


Q ss_pred             cceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccCcccCCccccCcccCccccccCcccccccc
Q 048351          531 SISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSY  610 (850)
Q Consensus       531 ~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~  610 (850)
                      +++ .+|.... ..++|+.|++++|++. .+|.....+..|+++++++|++. ..+..+.+++.+               
T Consensus       174 ~l~-~l~~~~~-~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l---------------  234 (394)
T COG4886         174 DLS-DLPKLLS-NLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNL---------------  234 (394)
T ss_pred             hhh-hhhhhhh-hhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccc---------------
Confidence            776 5665543 3566667777777666 44444444455666666666422 222222222222               


Q ss_pred             ccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCCCccccc
Q 048351          611 AVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQ  690 (850)
Q Consensus       611 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~  690 (850)
                                                          ..+.+++|++. .++..++.++.++.|++++|.++.. +. ++.
T Consensus       235 ------------------------------------~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i-~~-~~~  275 (394)
T COG4886         235 ------------------------------------SGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSI-SS-LGS  275 (394)
T ss_pred             ------------------------------------cccccCCceee-eccchhccccccceecccccccccc-cc-ccc
Confidence                                                33445555554 2244555555566666666666533 22 555


Q ss_pred             cCCCCeeeCCCCcCcccCccc
Q 048351          691 LQSLDFLDLSRNQFSGGIPSS  711 (850)
Q Consensus       691 l~~L~~L~Ls~N~l~~~~p~~  711 (850)
                      +.+++.||+++|.++...|..
T Consensus       276 ~~~l~~L~~s~n~~~~~~~~~  296 (394)
T COG4886         276 LTNLRELDLSGNSLSNALPLI  296 (394)
T ss_pred             cCccCEEeccCccccccchhh
Confidence            566666666666655444443

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.23  E-value=1e-11  Score=138.21  Aligned_cols=200  Identities=34%  Similarity=0.489  Sum_probs=162.3

Q ss_pred             CEEEcCCCcccccCCCccccccCccEEeccCCccccCCchhhcCCC-CcCeeccccccceeecchhHHhcCCCCCEEEcc
Q 048351          475 RILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFT-HLRVVALEENSISGNIPAWIGESLLNLVVLDLR  553 (850)
Q Consensus       475 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~  553 (850)
                      ..+++..|.+...+ ..+..++.++.|++.+|.++ .+|......+ +|+.|++++|++. .+|..+. .+++|+.|+++
T Consensus        96 ~~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~-~l~~L~~L~l~  171 (394)
T COG4886          96 PSLDLNLNRLRSNI-SELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLR-NLPNLKNLDLS  171 (394)
T ss_pred             ceeeccccccccCc-hhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhh-ccccccccccC
Confidence            46888888875332 34455688999999999999 5666666674 9999999999998 8876776 69999999999


Q ss_pred             CCccccccCcCcCCCCCcceeecccccCcccCCccccCcccCccccccCccccccccccCCCcccCccceEeeEEEEEec
Q 048351          554 SNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWK  633 (850)
Q Consensus       554 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  633 (850)
                      +|+++ .+|...+.++.|+.|++++|+++ .+|......                                         
T Consensus       172 ~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~-----------------------------------------  208 (394)
T COG4886         172 FNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELL-----------------------------------------  208 (394)
T ss_pred             Cchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhh-----------------------------------------
Confidence            99998 55655558899999999999998 444432211                                         


Q ss_pred             CcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCCCccccccCCCCeeeCCCCcCcccCccccc
Q 048351          634 GSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLS  713 (850)
Q Consensus       634 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~  713 (850)
                                ..|++|++++|++. .++..+..+..+..|.+++|++.. ++..++.++++++|++++|+++...+  +.
T Consensus       209 ----------~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-~~~~~~~l~~l~~L~~s~n~i~~i~~--~~  274 (394)
T COG4886         209 ----------SALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-LPESIGNLSNLETLDLSNNQISSISS--LG  274 (394)
T ss_pred             ----------hhhhhhhhcCCcce-ecchhhhhcccccccccCCceeee-ccchhccccccceecccccccccccc--cc
Confidence                      22478999999654 677889999999999999999984 47789999999999999999995544  89


Q ss_pred             CCCCCCEEEcCCCcCcccCCCC
Q 048351          714 QVNRLSVMDLSHNNLSGKIPTG  735 (850)
Q Consensus       714 ~l~~L~~L~ls~N~l~g~iP~~  735 (850)
                      .+.+++.|++++|.++...|..
T Consensus       275 ~~~~l~~L~~s~n~~~~~~~~~  296 (394)
T COG4886         275 SLTNLRELDLSGNSLSNALPLI  296 (394)
T ss_pred             ccCccCEEeccCccccccchhh
Confidence            9999999999999999776654

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.06  E-value=2.8e-11  Score=125.22  Aligned_cols=190  Identities=28%  Similarity=0.285  Sum_probs=127.0

Q ss_pred             cCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCC--cccCCCCCCcEEEccCCCCCCCCCccccccCC
Q 048351          120 LKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIP--PLLGNLSRLQYLSLGYNKLLRAGNLDWISQLF  197 (850)
Q Consensus       120 ~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p--~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~  197 (850)
                      .++.+|+...|.+..+....+......|++++.||||.|-|..-.|  .....|++|+.|+|+.|++........-..++
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~  197 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS  197 (505)
T ss_pred             hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence            5678888888888877632121356778999999999998874333  34567889999999999864332222233677


Q ss_pred             CccEEeCCCCCCCCCcchhhhhcCCCCCcEEEccCCCCCCCCCccccccccCCCCcccEEEccCCCCCCccchhhhcCCC
Q 048351          198 SLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSS  277 (850)
Q Consensus       198 ~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~  277 (850)
                      +|+.|.|+.|.++. .++...+..+|+|+.|+|..|.......    ...... ..|+.|||++|++...- +       
T Consensus       198 ~lK~L~l~~CGls~-k~V~~~~~~fPsl~~L~L~~N~~~~~~~----~~~~i~-~~L~~LdLs~N~li~~~-~-------  263 (505)
T KOG3207|consen  198 HLKQLVLNSCGLSW-KDVQWILLTFPSLEVLYLEANEIILIKA----TSTKIL-QTLQELDLSNNNLIDFD-Q-------  263 (505)
T ss_pred             hhheEEeccCCCCH-HHHHHHHHhCCcHHHhhhhcccccceec----chhhhh-hHHhhccccCCcccccc-c-------
Confidence            88888898888873 3455566678888888888885221111    122222 67888888888876421 0       


Q ss_pred             CCCCCCCCCCCcEEEccCCcCCcc-cchh-----hhcCCCCcEEEccCCcccc
Q 048351          278 IPDAPGPMISLRTLTLSDNELDGE-IPKF-----FQNMFKLEGLSLRGNSLEG  324 (850)
Q Consensus       278 ip~~l~~l~~L~~L~Ls~N~l~~~-~p~~-----l~~l~~L~~L~L~~N~l~~  324 (850)
                      . ...+.++.|+.|+++.+.+... +|+.     ...+++|++|++..|++..
T Consensus       264 ~-~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~  315 (505)
T KOG3207|consen  264 G-YKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRD  315 (505)
T ss_pred             c-cccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcccc
Confidence            0 2256778888888888887642 2332     3467788888888888753

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.05  E-value=4e-11  Score=124.02  Aligned_cols=64  Identities=28%  Similarity=0.176  Sum_probs=27.1

Q ss_pred             CCCCCCEEeCCCCCCCCCCC--cccCCCCCCcEEEccCCCCCCCCCc-cccccCCCccEEeCCCCCCC
Q 048351          146 SLSKLEYLDLFAASFSGPIP--PLLGNLSRLQYLSLGYNKLLRAGNL-DWISQLFSLRYLDLSSCNLS  210 (850)
Q Consensus       146 ~l~~L~~L~Ls~n~l~~~~p--~~l~~l~~L~~L~Ls~N~l~~~~~~-~~l~~l~~L~~L~Ls~n~l~  210 (850)
                      ++.+|+...|.++.... .+  .....|++++.||||+|-+...... .....+++|+.|+++.|++.
T Consensus       119 n~kkL~~IsLdn~~V~~-~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~  185 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVED-AGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLS  185 (505)
T ss_pred             hHHhhhheeecCccccc-cchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccccccc
Confidence            44555555555544431 11  1334455555555555543221111 11234444444444444443

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.02  E-value=5.7e-11  Score=116.65  Aligned_cols=83  Identities=29%  Similarity=0.331  Sum_probs=55.1

Q ss_pred             ccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCCCccccccCCCCeeeCCCCcCcccC-cccccCCCCCCEEEcC
Q 048351          646 VKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGI-PSSLSQVNRLSVMDLS  724 (850)
Q Consensus       646 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~ls  724 (850)
                      |+.||||+|.++ .+...-..+-+.+.|+|+.|.+...  ..++++-+|..||+++|+|.... -..+++++-|+++.+.
T Consensus       331 L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~  407 (490)
T KOG1259|consen  331 LQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLT  407 (490)
T ss_pred             ceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhc
Confidence            366777777666 3444444566677777777777644  45667777777777777776332 2356777888888888


Q ss_pred             CCcCccc
Q 048351          725 HNNLSGK  731 (850)
Q Consensus       725 ~N~l~g~  731 (850)
                      +|++.+.
T Consensus       408 ~NPl~~~  414 (490)
T KOG1259|consen  408 GNPLAGS  414 (490)
T ss_pred             CCCcccc
Confidence            8888754

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.01  E-value=3.9e-11  Score=120.93  Aligned_cols=228  Identities=22%  Similarity=0.203  Sum_probs=143.2

Q ss_pred             ccccccCCCCCCEEeCCCCCCCCC---CCCc-------ccCCCCCCCEEeCCCCCCCCCCCcc----cCCCCCCcEEEcc
Q 048351          115 LNPALLKLHYLRHLDLSFNNFSGS---QIPM-------FIGSLSKLEYLDLFAASFSGPIPPL----LGNLSRLQYLSLG  180 (850)
Q Consensus       115 l~~~l~~l~~L~~L~Ls~n~l~~~---~~p~-------~~~~l~~L~~L~Ls~n~l~~~~p~~----l~~l~~L~~L~Ls  180 (850)
                      +.+.+.+.+.|+.-++|+- ++|.   .+|+       .+-.+++|++||||+|.|.-.-+..    +..++.|++|.|.
T Consensus        50 i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~  128 (382)
T KOG1909|consen   50 IAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLN  128 (382)
T ss_pred             HHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhh
Confidence            3455666777777777753 2331   1332       2334567888888888776443332    4567788888888


Q ss_pred             CCCCCCCCCc------------cccccCCCccEEeCCCCCCCCC--cchhhhhcCCCCCcEEEccCCCCCCCCCcccccc
Q 048351          181 YNKLLRAGNL------------DWISQLFSLRYLDLSSCNLSKS--TDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFS  246 (850)
Q Consensus       181 ~N~l~~~~~~------------~~l~~l~~L~~L~Ls~n~l~~~--~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~  246 (850)
                      +|.+-....-            ...+.-+.|+++..+.|++...  ..+...+...+.|+.+.+..|.+..........+
T Consensus       129 N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~ea  208 (382)
T KOG1909|consen  129 NCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEA  208 (382)
T ss_pred             cCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHH
Confidence            7765221111            1134456788888888888765  2345567778889999999888865443333345


Q ss_pred             ccCCCCcccEEEccCCCCCCccchhhhcCCCCCCCCCCCCCCcEEEccCCcCCcccchhhh-----cCCCCcEEEccCCc
Q 048351          247 HLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIPKFFQ-----NMFKLEGLSLRGNS  321 (850)
Q Consensus       247 ~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~-----~l~~L~~L~L~~N~  321 (850)
                      +..+ ++|++|||.+|-++......      +...+..+++|+.|++++|.+...-...|.     ..++|+.|.+.+|.
T Consensus       209 l~~~-~~LevLdl~DNtft~egs~~------LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNe  281 (382)
T KOG1909|consen  209 LEHC-PHLEVLDLRDNTFTLEGSVA------LAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNE  281 (382)
T ss_pred             HHhC-CcceeeecccchhhhHHHHH------HHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcch
Confidence            5666 88999999999887543222      234456677899999999988754443332     46789999999998


Q ss_pred             cccccccccccccccccCCCCCChhccCCCCCCEEEccCCcC
Q 048351          322 LEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAGI  363 (850)
Q Consensus       322 l~~~~~~~~~~~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l  363 (850)
                      ++......             +-..+...+.|..|+|++|.+
T Consensus       282 It~da~~~-------------la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  282 ITRDAALA-------------LAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             hHHHHHHH-------------HHHHHhcchhhHHhcCCcccc
Confidence            87432221             011134456666666666666

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.98  E-value=2.9e-11  Score=121.85  Aligned_cols=259  Identities=22%  Similarity=0.251  Sum_probs=137.8

Q ss_pred             cccccCCCCCCEEeCCCCCCCCC---CCCcccCCCCCCCEEeCCCCCCCC----CCCc-------ccCCCCCCcEEEccC
Q 048351          116 NPALLKLHYLRHLDLSFNNFSGS---QIPMFIGSLSKLEYLDLFAASFSG----PIPP-------LLGNLSRLQYLSLGY  181 (850)
Q Consensus       116 ~~~l~~l~~L~~L~Ls~n~l~~~---~~p~~~~~l~~L~~L~Ls~n~l~~----~~p~-------~l~~l~~L~~L~Ls~  181 (850)
                      -+.+.....+++++||+|.|...   .+...+.+.++|+..++|+- ++|    .+|+       ++..+++|++||||.
T Consensus        23 ~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSD  101 (382)
T KOG1909|consen   23 EEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSD  101 (382)
T ss_pred             HHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccc
Confidence            34566778899999999988632   13345667788999888764 333    3443       345566888888888


Q ss_pred             CCCCCCCCcc---ccccCCCccEEeCCCCCCCCCcchhhhhcCCCCCcEEEccCCCCCCCCCccccccccCCCCcccEEE
Q 048351          182 NKLLRAGNLD---WISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLG  258 (850)
Q Consensus       182 N~l~~~~~~~---~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~  258 (850)
                      |.+-..+...   .+..++.|++|.|.+|.+.....  ..++.  -|..|.  .+           .....- +.|+++.
T Consensus       102 NA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag--~~l~~--al~~l~--~~-----------kk~~~~-~~Lrv~i  163 (382)
T KOG1909|consen  102 NAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAG--GRLGR--ALFELA--VN-----------KKAASK-PKLRVFI  163 (382)
T ss_pred             cccCccchHHHHHHHHhccCHHHHhhhcCCCChhHH--HHHHH--HHHHHH--HH-----------hccCCC-cceEEEE
Confidence            8763333221   24556666666666666543210  00000  000000  00           011111 5566666


Q ss_pred             ccCCCCCCccchhhhcCCCCCCCCCCCCCCcEEEccCCcCCc----ccchhhhcCCCCcEEEccCCcccccccccccccc
Q 048351          259 LSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDG----EIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNF  334 (850)
Q Consensus       259 Ls~N~l~~~~~~~l~~l~~ip~~l~~l~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l  334 (850)
                      ..+|++...-...      +...|...+.|+.+.++.|.|..    .+...|..+++|+.|||.+|-++.....      
T Consensus       164 ~~rNrlen~ga~~------~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~------  231 (382)
T KOG1909|consen  164 CGRNRLENGGATA------LAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSV------  231 (382)
T ss_pred             eeccccccccHHH------HHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHH------
Confidence            6666654321111      12234445566666666666542    1223455666677777766666533221      


Q ss_pred             ccccCCCCCChhccCCCCCCEEEccCCcCCCCCchhH----hhcCcCCCEEecccCcCcccCC----hhhhhhccCCcCE
Q 048351          335 SYLKMGPHFPKWLQTQKHFSVLDISSAGISDSIPDWF----SDTSHKLADLNFSHNQMTGRFP----NYISSMFILESPG  406 (850)
Q Consensus       335 ~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~----~~~~~~L~~L~Ls~N~l~~~~p----~~~~~~~~~~L~~  406 (850)
                             .+...+..+++|+.|++++|.+.......+    ....|+|+.+.+.+|.++...-    ..+ .. .+.+..
T Consensus       232 -------~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~-~e-k~dL~k  302 (382)
T KOG1909|consen  232 -------ALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACM-AE-KPDLEK  302 (382)
T ss_pred             -------HHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHH-hc-chhhHH
Confidence                   112224455666677777666665433332    3334567777777776653221    111 11 266667


Q ss_pred             EEccCCcC
Q 048351          407 IDISSNHL  414 (850)
Q Consensus       407 L~l~~N~l  414 (850)
                      |++++|.+
T Consensus       303 LnLngN~l  310 (382)
T KOG1909|consen  303 LNLNGNRL  310 (382)
T ss_pred             hcCCcccc
Confidence            77777777

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.95  E-value=3.8e-10  Score=107.30  Aligned_cols=131  Identities=31%  Similarity=0.347  Sum_probs=44.8

Q ss_pred             ccCCCCCCEEeCCCCCCCCCCCCcccC-CCCCCCEEeCCCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCCcccc-ccC
Q 048351          119 LLKLHYLRHLDLSFNNFSGSQIPMFIG-SLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAGNLDWI-SQL  196 (850)
Q Consensus       119 l~~l~~L~~L~Ls~n~l~~~~~p~~~~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~l-~~l  196 (850)
                      +.+..++++|+|++|.|+.  + +.++ .+.+|+.|+|++|.++.. + .+..+++|++|++++|++....  +.+ ..+
T Consensus        15 ~~n~~~~~~L~L~~n~I~~--I-e~L~~~l~~L~~L~Ls~N~I~~l-~-~l~~L~~L~~L~L~~N~I~~i~--~~l~~~l   87 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQIST--I-ENLGATLDKLEVLDLSNNQITKL-E-GLPGLPRLKTLDLSNNRISSIS--EGLDKNL   87 (175)
T ss_dssp             ------------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S-C--HHHHHH-
T ss_pred             ccccccccccccccccccc--c-cchhhhhcCCCEEECCCCCCccc-c-CccChhhhhhcccCCCCCCccc--cchHHhC
Confidence            4455678889999998874  3 2454 578888899998888853 2 4777888888888888864432  223 357


Q ss_pred             CCccEEeCCCCCCCCCcchhhhhcCCCCCcEEEccCCCCCCCCCccccccccCCCCcccEEEc
Q 048351          197 FSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGL  259 (850)
Q Consensus       197 ~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L  259 (850)
                      ++|++|++++|+|....+ ...+..+++|+.|+|.+|.++.... +...-+..+ |+|+.||-
T Consensus        88 p~L~~L~L~~N~I~~l~~-l~~L~~l~~L~~L~L~~NPv~~~~~-YR~~vi~~l-P~Lk~LD~  147 (175)
T PF14580_consen   88 PNLQELYLSNNKISDLNE-LEPLSSLPKLRVLSLEGNPVCEKKN-YRLFVIYKL-PSLKVLDG  147 (175)
T ss_dssp             TT--EEE-TTS---SCCC-CGGGGG-TT--EEE-TT-GGGGSTT-HHHHHHHH--TT-SEETT
T ss_pred             CcCCEEECcCCcCCChHH-hHHHHcCCCcceeeccCCcccchhh-HHHHHHHHc-ChhheeCC
Confidence            888888888888877643 3556677777777777777654321 111222233 55665553

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.93  E-value=5.2e-10  Score=106.37  Aligned_cols=121  Identities=30%  Similarity=0.402  Sum_probs=35.7

Q ss_pred             CCccEEEccCCCCCCCCCcccc-cCCCCCEEEcCCCcccccCCCccccccCccEEeccCCccccCCchhh-cCCCCcCee
Q 048351          448 QNLVYLDLSSNLLSGKLPDCWL-QFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLL-KNFTHLRVV  525 (850)
Q Consensus       448 ~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L  525 (850)
                      .++++|+|++|.|+. +. .++ .+.+|+.|++++|.++..  +.+..++.|++|++++|+++. +...+ ..+++|++|
T Consensus        19 ~~~~~L~L~~n~I~~-Ie-~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~L   93 (175)
T PF14580_consen   19 VKLRELNLRGNQIST-IE-NLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQEL   93 (175)
T ss_dssp             -------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--EE
T ss_pred             ccccccccccccccc-cc-chhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCc-cccchHHhCCcCCEE
Confidence            456677777777762 22 233 456677777777777632  245566677777777777763 33223 346667777


Q ss_pred             ccccccceeecch--hHHhcCCCCCEEEccCCccccccC---cCcCCCCCcceee
Q 048351          526 ALEENSISGNIPA--WIGESLLNLVVLDLRSNRFYGKIP---FQLCHLADIQILD  575 (850)
Q Consensus       526 ~L~~N~l~~~ip~--~~~~~l~~L~~L~L~~N~l~~~~p---~~l~~l~~L~~L~  575 (850)
                      ++++|+|. .+..  .+. .+++|++|++.+|.++...-   ..+..+|+|+.||
T Consensus        94 ~L~~N~I~-~l~~l~~L~-~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD  146 (175)
T PF14580_consen   94 YLSNNKIS-DLNELEPLS-SLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD  146 (175)
T ss_dssp             E-TTS----SCCCCGGGG-G-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred             ECcCCcCC-ChHHhHHHH-cCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence            77777665 2221  122 46666666666666653210   1244556666665

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.91  E-value=4e-10  Score=110.80  Aligned_cols=139  Identities=27%  Similarity=0.334  Sum_probs=106.5

Q ss_pred             CCchhhcCCCCcCeeccccccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccCcccCCcccc
Q 048351          511 ELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFN  590 (850)
Q Consensus       511 ~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~  590 (850)
                      ..-..+.....|+.+||++|.|+ .|.+.+- -.|.++.|++++|.+...-  .+..+++|+.||||+|.++.. ...  
T Consensus       275 ~~~~~~dTWq~LtelDLS~N~I~-~iDESvK-L~Pkir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~Ls~~-~Gw--  347 (490)
T KOG1259|consen  275 SALVSADTWQELTELDLSGNLIT-QIDESVK-LAPKLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNLLAEC-VGW--  347 (490)
T ss_pred             ceEEecchHhhhhhccccccchh-hhhhhhh-hccceeEEeccccceeeeh--hhhhcccceEeecccchhHhh-hhh--
Confidence            33334445677899999999998 8888775 5789999999999998433  378899999999999988721 110  


Q ss_pred             CcccCccccccCccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccC
Q 048351          591 NFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGL  670 (850)
Q Consensus       591 ~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L  670 (850)
                                                                       ...+.+++.|.|++|.+..  -..++.+-+|
T Consensus       348 -------------------------------------------------h~KLGNIKtL~La~N~iE~--LSGL~KLYSL  376 (490)
T KOG1259|consen  348 -------------------------------------------------HLKLGNIKTLKLAQNKIET--LSGLRKLYSL  376 (490)
T ss_pred             -------------------------------------------------HhhhcCEeeeehhhhhHhh--hhhhHhhhhh
Confidence                                                             0133445889999998853  3567888999


Q ss_pred             CeEecCCCcCccCC-CccccccCCCCeeeCCCCcCccc
Q 048351          671 IGLNLSRNNLTGYI-TPKIGQLQSLDFLDLSRNQFSGG  707 (850)
Q Consensus       671 ~~L~Ls~N~l~~~i-p~~l~~l~~L~~L~Ls~N~l~~~  707 (850)
                      ..||+++|+|...- -..+++++.|+.+.|-+|.+.+.
T Consensus       377 vnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~  414 (490)
T KOG1259|consen  377 VNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS  414 (490)
T ss_pred             eeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence            99999999997542 25789999999999999999854

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=98.84  E-value=3.8e-09  Score=75.33  Aligned_cols=40  Identities=48%  Similarity=0.978  Sum_probs=30.4

Q ss_pred             HHHHHHHHHhhhcCC-CCCCCCCCCCCCCC-CCCCccccceEec
Q 048351           37 EEERKALLKFKQGLV-DEFGFLSSWGSEGE-KKDCCNWRGVRCS   78 (850)
Q Consensus        37 ~~~~~~Ll~~k~~~~-~~~~~l~~W~~~~~-~~~~c~w~gv~C~   78 (850)
                      ++|++||++||+++. +|.+.+.+|+.  . ..+||+|.||+|+
T Consensus         2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~--~~~~~~C~W~GV~Cd   43 (43)
T PF08263_consen    2 NQDRQALLAFKKSLNNDPSGVLSSWNP--SSDSDPCSWSGVTCD   43 (43)
T ss_dssp             HHHHHHHHHHHHCTT-SC-CCCTT--T--T--S-CCCSTTEEE-
T ss_pred             cHHHHHHHHHHHhcccccCcccccCCC--cCCCCCeeeccEEeC
Confidence            689999999999998 57789999984  2 2799999999995

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.82  E-value=4.6e-10  Score=125.05  Aligned_cols=85  Identities=24%  Similarity=0.291  Sum_probs=56.0

Q ss_pred             ccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCCCccccccCCCCeeeCCCCcCccc---Cccc-ccCCCCCCEE
Q 048351          646 VKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGG---IPSS-LSQVNRLSVM  721 (850)
Q Consensus       646 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~---~p~~-l~~l~~L~~L  721 (850)
                      |+.+++++|.+. .++..+..+..+..|++++|++...  ..+.....+..+..+.|.+...   .... ....+.+...
T Consensus       234 L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (414)
T KOG0531|consen  234 LRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTL  310 (414)
T ss_pred             HHHHhcccCccc-cccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhcccccccccccccc
Confidence            577888888876 4445566777788888888887755  4455667777777777776621   1111 4445677777


Q ss_pred             EcCCCcCcccCC
Q 048351          722 DLSHNNLSGKIP  733 (850)
Q Consensus       722 ~ls~N~l~g~iP  733 (850)
                      .+.+|......+
T Consensus       311 ~~~~~~~~~~~~  322 (414)
T KOG0531|consen  311 TLELNPIRKISS  322 (414)
T ss_pred             ccccCccccccc
Confidence            777777765444

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.80  E-value=2.4e-09  Score=83.57  Aligned_cols=60  Identities=38%  Similarity=0.521  Sum_probs=41.2

Q ss_pred             cCCeEecCCCcCccCCCccccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCCcC
Q 048351          669 GLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNL  728 (850)
Q Consensus       669 ~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l  728 (850)
                      +|++|++++|+++...+..|.++++|++|++++|+++...|..|.++++|++|++++|+|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            566677777777765556667777777777777777766666677777777777777654

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.76  E-value=1.4e-09  Score=121.19  Aligned_cols=57  Identities=33%  Similarity=0.413  Sum_probs=30.0

Q ss_pred             CCeEecCCCcCccCCCccccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCCcCc
Q 048351          670 LIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLS  729 (850)
Q Consensus       670 L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~  729 (850)
                      |+.+++++|.+. .++..+..+..+..||+++|++...  ..+.....+..+....|.+.
T Consensus       234 L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~  290 (414)
T KOG0531|consen  234 LRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLA  290 (414)
T ss_pred             HHHHhcccCccc-cccccccccccccccchhhcccccc--ccccccchHHHhccCcchhc
Confidence            556666666665 2334455556666666666665533  22334444555555555544

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.73  E-value=5e-09  Score=81.81  Aligned_cols=61  Identities=39%  Similarity=0.515  Sum_probs=56.9

Q ss_pred             ccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCCCccccccCCCCeeeCCCCcC
Q 048351          644 GLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQF  704 (850)
Q Consensus       644 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l  704 (850)
                      ++|++|++++|+++...+..|.++++|++|++++|+++...|..|.++++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            3579999999999988778999999999999999999988889999999999999999986

...

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.50  E-value=1.5e-07  Score=112.20  Aligned_cols=111  Identities=36%  Similarity=0.465  Sum_probs=84.5

Q ss_pred             ccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCCccccccCCC
Q 048351          119 LLKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAGNLDWISQLFS  198 (850)
Q Consensus       119 l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~  198 (850)
                      |..++.|++|||++|.=-+ .+|.+++.|-+||+|+|+++.+. .+|..+++|.+|.+|++..+...... +.....+++
T Consensus       567 f~~m~~LrVLDLs~~~~l~-~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~-~~i~~~L~~  643 (889)
T KOG4658|consen  567 FRSLPLLRVLDLSGNSSLS-KLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESI-PGILLELQS  643 (889)
T ss_pred             HhhCcceEEEECCCCCccC-cCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccc-cchhhhccc
Confidence            6779999999999975433 69999999999999999999998 78999999999999999987642222 344566999


Q ss_pred             ccEEeCCCCCCCCCcchhhhhcCCCCCcEEEccC
Q 048351          199 LRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQ  232 (850)
Q Consensus       199 L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~  232 (850)
                      ||+|.+..............+..+.+|+.+....
T Consensus       644 Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~  677 (889)
T KOG4658|consen  644 LRVLRLPRSALSNDKLLLKELENLEHLENLSITI  677 (889)
T ss_pred             ccEEEeeccccccchhhHHhhhcccchhhheeec
Confidence            9999997765433323345556666666665543

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.43  E-value=7.7e-09  Score=113.37  Aligned_cols=107  Identities=28%  Similarity=0.297  Sum_probs=77.0

Q ss_pred             cccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCCCccccccCCCCeeeCCCCcCcccCcccccCCCCCCEEE
Q 048351          643 LGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMD  722 (850)
Q Consensus       643 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  722 (850)
                      ++.++.||||+|+++..  +.+..++.|+.|||++|.++...--....+. |+.|.+++|.++..  ..+.+|.+|+.||
T Consensus       186 l~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~LksL~~LD  260 (1096)
T KOG1859|consen  186 LPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL--RGIENLKSLYGLD  260 (1096)
T ss_pred             HHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhh--hhHHhhhhhhccc
Confidence            44558899999999744  2788899999999999999854332333444 99999999998854  4678889999999


Q ss_pred             cCCCcCcccCCC--CCcCCCcCccccCCCCCCCC
Q 048351          723 LSHNNLSGKIPT--GTQLQSFNASVYDGNPELCG  754 (850)
Q Consensus       723 ls~N~l~g~iP~--~~~~~~~~~~~~~gN~~lc~  754 (850)
                      +|+|-|++.---  ...+..+....++|||.-|.
T Consensus       261 lsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~  294 (1096)
T KOG1859|consen  261 LSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCA  294 (1096)
T ss_pred             hhHhhhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence            999988764111  01223344556889998885

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.34  E-value=1.1e-08  Score=112.07  Aligned_cols=180  Identities=29%  Similarity=0.258  Sum_probs=107.6

Q ss_pred             CCccccccCccEEeccCCccccCCchhhcCC-CCcCeeccccccce----------eecchhHHhcCCCCCEEEccCCcc
Q 048351          489 PNSCGYLQKMLTLSLHHNNFSGELPSLLKNF-THLRVVALEENSIS----------GNIPAWIGESLLNLVVLDLRSNRF  557 (850)
Q Consensus       489 p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~L~~N~l~----------~~ip~~~~~~l~~L~~L~L~~N~l  557 (850)
                      |-.+..+.+|++|.+.++.+.. .- .+..+ .+|++|.- .|.+.          |.+.....  ...|.+.+.+.|.+
T Consensus       102 pi~ifpF~sLr~LElrg~~L~~-~~-GL~~lr~qLe~LIC-~~Sl~Al~~v~ascggd~~ns~~--Wn~L~~a~fsyN~L  176 (1096)
T KOG1859|consen  102 PISIFPFRSLRVLELRGCDLST-AK-GLQELRHQLEKLIC-HNSLDALRHVFASCGGDISNSPV--WNKLATASFSYNRL  176 (1096)
T ss_pred             CceeccccceeeEEecCcchhh-hh-hhHHHHHhhhhhhh-hccHHHHHHHHHHhccccccchh--hhhHhhhhcchhhH
Confidence            4556778899999999999873 11 11111 12333321 11111          12211111  23566777777877


Q ss_pred             ccccCcCcCCCCCcceeecccccCcccCCccccCcccCccccccCccccccccccCCCcccCccceEeeEEEEEecCccc
Q 048351          558 YGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEY  637 (850)
Q Consensus       558 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  637 (850)
                      . ....++.-++.|+.|||++|+++..-  .                                                 
T Consensus       177 ~-~mD~SLqll~ale~LnLshNk~~~v~--~-------------------------------------------------  204 (1096)
T KOG1859|consen  177 V-LMDESLQLLPALESLNLSHNKFTKVD--N-------------------------------------------------  204 (1096)
T ss_pred             H-hHHHHHHHHHHhhhhccchhhhhhhH--H-------------------------------------------------
Confidence            6 44556666777888888888876211  1                                                 


Q ss_pred             ccccccccccEEEcCCCCCCCCChh-hhhccccCCeEecCCCcCccCCCccccccCCCCeeeCCCCcCcccCc-ccccCC
Q 048351          638 EYKNTLGLVKSVDLSSNKLGGEVPE-EIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIP-SSLSQV  715 (850)
Q Consensus       638 ~~~~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p-~~l~~l  715 (850)
                        +..++.|++|||+.|.+. .+|. ....+. |+.|+|++|.++..  ..+.+|.+|+.||+|+|-|.+--. .-+..|
T Consensus       205 --Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsL  278 (1096)
T KOG1859|consen  205 --LRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSL  278 (1096)
T ss_pred             --HHhcccccccccccchhc-cccccchhhhh-heeeeecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHH
Confidence              123344577888888887 3443 223333 78888888888754  567788888888888887774321 123445


Q ss_pred             CCCCEEEcCCCcCccc
Q 048351          716 NRLSVMDLSHNNLSGK  731 (850)
Q Consensus       716 ~~L~~L~ls~N~l~g~  731 (850)
                      .+|+.|+|.+|++.+.
T Consensus       279 s~L~~L~LeGNPl~c~  294 (1096)
T KOG1859|consen  279 SSLIVLWLEGNPLCCA  294 (1096)
T ss_pred             HHHHHHhhcCCccccC
Confidence            6777888888887643

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.32  E-value=7.9e-09  Score=101.91  Aligned_cols=184  Identities=23%  Similarity=0.228  Sum_probs=94.8

Q ss_pred             CCEEeCCCCCCCCC-CCcccCCCCCCcEEEccCCCCCCCCCccccccCCCccEEeCCCCC-CCCCcchhhhhcCCCCCcE
Q 048351          150 LEYLDLFAASFSGP-IPPLLGNLSRLQYLSLGYNKLLRAGNLDWISQLFSLRYLDLSSCN-LSKSTDWLQEVDKIPSLKT  227 (850)
Q Consensus       150 L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~l~~l~~L~~  227 (850)
                      |++||||+..++-. +-.-+..|.+|+.|.+.++++ .......+++-.+|+.||++.+. ++.. ..---+.+++.|.+
T Consensus       187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~L-dD~I~~~iAkN~~L~~lnlsm~sG~t~n-~~~ll~~scs~L~~  264 (419)
T KOG2120|consen  187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRL-DDPIVNTIAKNSNLVRLNLSMCSGFTEN-ALQLLLSSCSRLDE  264 (419)
T ss_pred             hHHhhcchhheeHHHHHHHHHHHHhhhhcccccccc-CcHHHHHHhccccceeeccccccccchh-HHHHHHHhhhhHhh
Confidence            55555555444311 112234455555555555543 22222234455555555555543 2221 11223456677777


Q ss_pred             EEccCCCCCCCCCccccccccCCCCcccEEEccCCCCCCccchhhhcCCCCCCCCCCCCCCcEEEccCCc-CCcccchhh
Q 048351          228 LYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNE-LDGEIPKFF  306 (850)
Q Consensus       228 L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~ip~~l~~l~~L~~L~Ls~N~-l~~~~p~~l  306 (850)
                      |+|++|.+.......   ......++|+.|+|++.+-.-... .      +..-...+++|.+|||++|. ++...-..|
T Consensus       265 LNlsWc~l~~~~Vtv---~V~hise~l~~LNlsG~rrnl~~s-h------~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~  334 (419)
T KOG2120|consen  265 LNLSWCFLFTEKVTV---AVAHISETLTQLNLSGYRRNLQKS-H------LSTLVRRCPNLVHLDLSDSVMLKNDCFQEF  334 (419)
T ss_pred             cCchHhhccchhhhH---HHhhhchhhhhhhhhhhHhhhhhh-H------HHHHHHhCCceeeeccccccccCchHHHHH
Confidence            777777665443211   112222677777777654110000 0      11113467888888888775 443344556


Q ss_pred             hcCCCCcEEEccCCccccccccccccccccccCCCCCChhccCCCCCCEEEccCC
Q 048351          307 QNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSA  361 (850)
Q Consensus       307 ~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n  361 (850)
                      ..++.|++|.++.+.  +++|..++              .+...+.|.+||+.++
T Consensus       335 ~kf~~L~~lSlsRCY--~i~p~~~~--------------~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  335 FKFNYLQHLSLSRCY--DIIPETLL--------------ELNSKPSLVYLDVFGC  373 (419)
T ss_pred             Hhcchheeeehhhhc--CCChHHee--------------eeccCcceEEEEeccc
Confidence            788888888888875  33443321              2556677777776554

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.31  E-value=2.5e-08  Score=87.23  Aligned_cols=85  Identities=27%  Similarity=0.366  Sum_probs=41.7

Q ss_pred             cEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCCCccccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCC
Q 048351          647 KSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHN  726 (850)
Q Consensus       647 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N  726 (850)
                      +.|+|++|+|+ .+|.++..++.|+.||++.|.+. ..|..+..+.++..||..+|.+. .||..+---+.....++.++
T Consensus        80 t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgne  156 (177)
T KOG4579|consen   80 TTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNE  156 (177)
T ss_pred             hhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCC
Confidence            45555555555 45555555555555555555555 33444444555555555555554 33333222222233344444


Q ss_pred             cCcccCCC
Q 048351          727 NLSGKIPT  734 (850)
Q Consensus       727 ~l~g~iP~  734 (850)
                      ++.+..|.
T Consensus       157 pl~~~~~~  164 (177)
T KOG4579|consen  157 PLGDETKK  164 (177)
T ss_pred             cccccCcc
Confidence            55444443

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.31  E-value=5.7e-07  Score=107.24  Aligned_cols=129  Identities=28%  Similarity=0.305  Sum_probs=81.1

Q ss_pred             CCCcEEEccCCcCcCccccccccCCCCccEEEccCCC--CCCCCCcccccCCCCCEEEcCCCcccccCCCccccccCccE
Q 048351          423 SNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNL--LSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLT  500 (850)
Q Consensus       423 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~--l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  500 (850)
                      ...+...+-+|.+.......   .+++|++|-+..|.  +....++.|..++.|++|||++|.=-+.+|..++.+-+|++
T Consensus       523 ~~~rr~s~~~~~~~~~~~~~---~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lry  599 (889)
T KOG4658|consen  523 NSVRRMSLMNNKIEHIAGSS---ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRY  599 (889)
T ss_pred             hheeEEEEeccchhhccCCC---CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhc
Confidence            34445555555443322211   22467777777775  44344455667777777777777655677777777777777


Q ss_pred             EeccCCccccCCchhhcCCCCcCeeccccccceeecchhHHhcCCCCCEEEccCCc
Q 048351          501 LSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNR  556 (850)
Q Consensus       501 L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~  556 (850)
                      |++++..+. .+|..+.++..|.+|++..+.-...+|.... .+++|++|.+..-.
T Consensus       600 L~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~-~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  600 LDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILL-ELQSLRVLRLPRSA  653 (889)
T ss_pred             ccccCCCcc-ccchHHHHHHhhheeccccccccccccchhh-hcccccEEEeeccc
Confidence            777777777 6777777777777777777665544443333 47777777765543

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.30  E-value=2.4e-07  Score=91.62  Aligned_cols=86  Identities=23%  Similarity=0.250  Sum_probs=53.4

Q ss_pred             CCcEEEccCCCCCCCCCccccc-cCCCccEEeCCCCCCCCCcchhhhhcCCCCCcEEEccCCCCCCCCCccccccc-cCC
Q 048351          173 RLQYLSLGYNKLLRAGNLDWIS-QLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSH-LNS  250 (850)
Q Consensus       173 ~L~~L~Ls~N~l~~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~-~~~  250 (850)
                      -++.|-+.++.+-..++...++ ..+.++.+||.+|.|+...++...+.++|.|++|+++.|.+...+.     .+ ...
T Consensus        46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~-----~lp~p~  120 (418)
T KOG2982|consen   46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIK-----SLPLPL  120 (418)
T ss_pred             chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccc-----cCcccc
Confidence            3444555555443444444343 4677888899999888876666677788888888888888776553     11 122


Q ss_pred             CCcccEEEccCCCC
Q 048351          251 SPSLETLGLSYNNL  264 (850)
Q Consensus       251 ~~~L~~L~Ls~N~l  264 (850)
                       .+|++|-|.+..+
T Consensus       121 -~nl~~lVLNgT~L  133 (418)
T KOG2982|consen  121 -KNLRVLVLNGTGL  133 (418)
T ss_pred             -cceEEEEEcCCCC
Confidence             4555555555443

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.17  E-value=1.1e-07  Score=83.36  Aligned_cols=100  Identities=21%  Similarity=0.336  Sum_probs=78.8

Q ss_pred             ccEEEcCCCCCCCCChhhhhc-cccCCeEecCCCcCccCCCccccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcC
Q 048351          646 VKSVDLSSNKLGGEVPEEIMD-LVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLS  724 (850)
Q Consensus       646 L~~L~Ls~N~l~~~~p~~l~~-l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls  724 (850)
                      |+.++|++|.+. ..|..|.. .+.++.|||++|.++ .+|..++.++.|+.|+++.|.+. ..|..+..|.+|.+||.-
T Consensus        55 l~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~  131 (177)
T KOG4579|consen   55 LTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSP  131 (177)
T ss_pred             EEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCC
Confidence            478999999998 45555554 568999999999999 57888999999999999999999 677888889999999999


Q ss_pred             CCcCcccCCCCCcCCCcCccccCCC
Q 048351          725 HNNLSGKIPTGTQLQSFNASVYDGN  749 (850)
Q Consensus       725 ~N~l~g~iP~~~~~~~~~~~~~~gN  749 (850)
                      +|.+- +||......+..+..-.||
T Consensus       132 ~na~~-eid~dl~~s~~~al~~lgn  155 (177)
T KOG4579|consen  132 ENARA-EIDVDLFYSSLPALIKLGN  155 (177)
T ss_pred             CCccc-cCcHHHhccccHHHHHhcC
Confidence            99876 7776533333333332344

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.08  E-value=3.9e-07  Score=89.05  Aligned_cols=199  Identities=21%  Similarity=0.127  Sum_probs=106.8

Q ss_pred             ccCCCCCCEEeCCCCCCCCC---CCCcccCCCCCCCEEeCCCCCCCCC----CC-------cccCCCCCCcEEEccCCCC
Q 048351          119 LLKLHYLRHLDLSFNNFSGS---QIPMFIGSLSKLEYLDLFAASFSGP----IP-------PLLGNLSRLQYLSLGYNKL  184 (850)
Q Consensus       119 l~~l~~L~~L~Ls~n~l~~~---~~p~~~~~l~~L~~L~Ls~n~l~~~----~p-------~~l~~l~~L~~L~Ls~N~l  184 (850)
                      +.-+..++.+|||+|.|...   .+...+.+-.+|+..+++.- ++|.    +|       .++-.|++|+..+||.|.+
T Consensus        26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf  104 (388)
T COG5238          26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF  104 (388)
T ss_pred             HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence            44578889999999988642   12334566778888888764 2332    33       3456788888888888876


Q ss_pred             CCCCCc---cccccCCCccEEeCCCCCCCCCcc--hh---------hhhcCCCCCcEEEccCCCCCCCCCccccccccCC
Q 048351          185 LRAGNL---DWISQLFSLRYLDLSSCNLSKSTD--WL---------QEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNS  250 (850)
Q Consensus       185 ~~~~~~---~~l~~l~~L~~L~Ls~n~l~~~~~--~~---------~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~  250 (850)
                      -...+.   +.+++-+.|.+|.|++|.+..+..  +-         ....+-|.|++.....|++...........+...
T Consensus       105 g~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh  184 (388)
T COG5238         105 GSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESH  184 (388)
T ss_pred             CcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhh
Confidence            332222   246677778888888887654311  11         1122345666666666665543332111111111


Q ss_pred             CCcccEEEccCCCCCCccchhhhcCCCCCCCCCCCCCCcEEEccCCcCCccc----chhhhcCCCCcEEEccCCcccc
Q 048351          251 SPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEI----PKFFQNMFKLEGLSLRGNSLEG  324 (850)
Q Consensus       251 ~~~L~~L~Ls~N~l~~~~~~~l~~l~~ip~~l~~l~~L~~L~Ls~N~l~~~~----p~~l~~l~~L~~L~L~~N~l~~  324 (850)
                       ..|+++.+..|.|.-.....+.     -..+..+.+|+.|||.+|.++-.-    ...+...+.|+.|.+.+|-++.
T Consensus       185 -~~lk~vki~qNgIrpegv~~L~-----~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~  256 (388)
T COG5238         185 -ENLKEVKIQQNGIRPEGVTMLA-----FLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSN  256 (388)
T ss_pred             -cCceeEEeeecCcCcchhHHHH-----HHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhcc
Confidence             3566666666655422111100     001234556666666666655321    2223344455666666665543

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.96  E-value=3.9e-07  Score=90.27  Aligned_cols=60  Identities=25%  Similarity=0.219  Sum_probs=35.7

Q ss_pred             CcccEEEccCCCCCCccchhhhcCCCCCCCCCCCCCCcEEEccCCcCCcccchhhhcCCCCcEEEccCC
Q 048351          252 PSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGN  320 (850)
Q Consensus       252 ~~L~~L~Ls~N~l~~~~~~~l~~l~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N  320 (850)
                      +.|++|||++..|+..--.         ..+..+.+|+.|.|.++++...+...+..-.+|+.|+|+.+
T Consensus       185 sRlq~lDLS~s~it~stl~---------~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~  244 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVSTLH---------GILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMC  244 (419)
T ss_pred             hhhHHhhcchhheeHHHHH---------HHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccc
Confidence            4577777776666532111         11345566666666666666666666666666666666654

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.82  E-value=1.1e-05  Score=79.24  Aligned_cols=93  Identities=16%  Similarity=0.162  Sum_probs=57.4

Q ss_pred             cCCCCCCCEEeCCCCCCCCC----CCcccCCCCCCcEEEccCCCCCCCC---------CccccccCCCccEEeCCCCCCC
Q 048351          144 IGSLSKLEYLDLFAASFSGP----IPPLLGNLSRLQYLSLGYNKLLRAG---------NLDWISQLFSLRYLDLSSCNLS  210 (850)
Q Consensus       144 ~~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~---------~~~~l~~l~~L~~L~Ls~n~l~  210 (850)
                      +..+..++.+|||+|.|...    +...+++-.+|+..+++.-..-...         ..+++.+|++|+..+||.|-+.
T Consensus        26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg  105 (388)
T COG5238          26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG  105 (388)
T ss_pred             HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence            34477888899999988644    2334566677888777653211100         0133566777888888887765


Q ss_pred             CC--cchhhhhcCCCCCcEEEccCCCCC
Q 048351          211 KS--TDWLQEVDKIPSLKTLYLEQCDLQ  236 (850)
Q Consensus       211 ~~--~~~~~~l~~l~~L~~L~L~~n~l~  236 (850)
                      ..  +.+-+.+++-+.|++|.|++|.+.
T Consensus       106 ~~~~e~L~d~is~~t~l~HL~l~NnGlG  133 (388)
T COG5238         106 SEFPEELGDLISSSTDLVHLKLNNNGLG  133 (388)
T ss_pred             cccchHHHHHHhcCCCceeEEeecCCCC
Confidence            43  223344566677777777777654

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.75  E-value=1.8e-05  Score=56.41  Aligned_cols=17  Identities=35%  Similarity=0.597  Sum_probs=6.5

Q ss_pred             ccccCCCCeeeCCCCcC
Q 048351          688 IGQLQSLDFLDLSRNQF  704 (850)
Q Consensus       688 l~~l~~L~~L~Ls~N~l  704 (850)
                      ++++++|+.|++++|++
T Consensus        20 l~~l~~L~~L~l~~N~i   36 (44)
T PF12799_consen   20 LSNLPNLETLNLSNNPI   36 (44)
T ss_dssp             GTTCTTSSEEEETSSCC
T ss_pred             HhCCCCCCEEEecCCCC
Confidence            33333333333333333

...

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.75  E-value=4.4e-06  Score=82.97  Aligned_cols=184  Identities=23%  Similarity=0.300  Sum_probs=116.8

Q ss_pred             CCCCCCEEeCCCCCCCCC-CCCcccCCCCCCCEEeCCCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCCccccccCCCc
Q 048351          121 KLHYLRHLDLSFNNFSGS-QIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAGNLDWISQLFSL  199 (850)
Q Consensus       121 ~l~~L~~L~Ls~n~l~~~-~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L  199 (850)
                      ..++++.|||.+|.|+.- ++..-+.++++|++|+|+.|.++..|-..=..+.+|++|-|.+..+.-......+..++.+
T Consensus        69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v  148 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV  148 (418)
T ss_pred             HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence            467889999999988742 2344567899999999999988754432214667888888888776444444557778888


Q ss_pred             cEEeCCCCCCCCCc-------ch---hhhhcCCCCCcEEEccCCCCCCCCCccccccccCCCCcccEEEccCCCCCCccc
Q 048351          200 RYLDLSSCNLSKST-------DW---LQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIY  269 (850)
Q Consensus       200 ~~L~Ls~n~l~~~~-------~~---~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~  269 (850)
                      +.|.+|.|++...-       ++   ...+...+.+..++++-|++.            +..+++..+.+..|.+...- 
T Consensus       149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~------------r~Fpnv~sv~v~e~PlK~~s-  215 (418)
T KOG2982|consen  149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLS------------RIFPNVNSVFVCEGPLKTES-  215 (418)
T ss_pred             hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHH------------hhcccchheeeecCcccchh-
Confidence            88888888543320       01   111222233333333333332            22266777777766554321 


Q ss_pred             hhhhcCCCCCCCCCCCCCCcEEEccCCcCCcc-cchhhhcCCCCcEEEccCCccccc
Q 048351          270 PWLFNVSSIPDAPGPMISLRTLTLSDNELDGE-IPKFFQNMFKLEGLSLRGNSLEGV  325 (850)
Q Consensus       270 ~~l~~l~~ip~~l~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~L~~N~l~~~  325 (850)
                              --+.+..++.+-.|+|+.|+|..- --+.+..+++|..|.+++|.+...
T Consensus       216 --------~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~  264 (418)
T KOG2982|consen  216 --------SEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDP  264 (418)
T ss_pred             --------hcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccccc
Confidence                    112345567777899999988642 225678899999999999987643

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.67  E-value=8.5e-05  Score=79.66  Aligned_cols=76  Identities=14%  Similarity=0.136  Sum_probs=49.2

Q ss_pred             cccccCccEEeccCCccccCCchhhcCCCCcCeeccccccceeecchhHHhcCCCCCEEEccCC-ccccccCcCcCCCCC
Q 048351          492 CGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSN-RFYGKIPFQLCHLAD  570 (850)
Q Consensus       492 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N-~l~~~~p~~l~~l~~  570 (850)
                      +..+.+++.|++++|.++ .+|.   -..+|+.|.++++.--..+|..+   .++|++|++++| .+. .+|.      +
T Consensus        48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~-sLP~------s  113 (426)
T PRK15386         48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEIS-GLPE------S  113 (426)
T ss_pred             HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh---hhhhhheEccCccccc-cccc------c
Confidence            344678888999988877 4562   23468888888744333677544   357888888888 443 4443      4


Q ss_pred             cceeecccccC
Q 048351          571 IQILDLSLNNI  581 (850)
Q Consensus       571 L~~L~Ls~N~l  581 (850)
                      |+.|+++.|..
T Consensus       114 Le~L~L~~n~~  124 (426)
T PRK15386        114 VRSLEIKGSAT  124 (426)
T ss_pred             cceEEeCCCCC
Confidence            66677766554

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.64  E-value=6.6e-05  Score=70.88  Aligned_cols=107  Identities=26%  Similarity=0.324  Sum_probs=74.0

Q ss_pred             CCCCEEeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCCccccccCCCccEE
Q 048351          123 HYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAGNLDWISQLFSLRYL  202 (850)
Q Consensus       123 ~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L  202 (850)
                      .+...+||++|.+..  + ..+..++.|.+|.|++|.|+.+-|.--.-+++|..|.|.+|.+...++..-+..+++|++|
T Consensus        42 d~~d~iDLtdNdl~~--l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L  118 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLRK--L-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL  118 (233)
T ss_pred             cccceecccccchhh--c-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence            456778888888863  2 3456788888899999888877676556677888888888888777777777777888888


Q ss_pred             eCCCCCCCCCcch-hhhhcCCCCCcEEEccC
Q 048351          203 DLSSCNLSKSTDW-LQEVDKIPSLKTLYLEQ  232 (850)
Q Consensus       203 ~Ls~n~l~~~~~~-~~~l~~l~~L~~L~L~~  232 (850)
                      .+-+|.++.-... .-.+..+|+|++||...
T Consensus       119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             eecCCchhcccCceeEEEEecCcceEeehhh
Confidence            8777776653211 11234455555555543

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.63  E-value=0.0002  Score=76.86  Aligned_cols=142  Identities=17%  Similarity=0.178  Sum_probs=88.0

Q ss_pred             cccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCCccccccCC
Q 048351          118 ALLKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAGNLDWISQLF  197 (850)
Q Consensus       118 ~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~  197 (850)
                      .+..+.++++|++++|.++  .+|. +  -.+|++|+++++.--..+|..+  .++|++|++++|.....       -..
T Consensus        47 r~~~~~~l~~L~Is~c~L~--sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~s-------LP~  112 (426)
T PRK15386         47 QIEEARASGRLYIKDCDIE--SLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISG-------LPE  112 (426)
T ss_pred             HHHHhcCCCEEEeCCCCCc--ccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccc-------ccc
Confidence            3555688999999999888  4673 2  3479999999865444667655  36899999998842211       124


Q ss_pred             CccEEeCCCCCCCCCcchhhhhcCCCCCcEEEccCCCCCCCCCccccccccCCCCcccEEEccCCCCCCccchhhhcCCC
Q 048351          198 SLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSS  277 (850)
Q Consensus       198 ~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~  277 (850)
                      +|+.|+++.+....+..+|.      +|+.|.+.+++......    .. ..+.++|++|++++|....           
T Consensus       113 sLe~L~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~----lp-~~LPsSLk~L~Is~c~~i~-----------  170 (426)
T PRK15386        113 SVRSLEIKGSATDSIKNVPN------GLTSLSINSYNPENQAR----ID-NLISPSLKTLSLTGCSNII-----------  170 (426)
T ss_pred             ccceEEeCCCCCcccccCcc------hHhheeccccccccccc----cc-cccCCcccEEEecCCCccc-----------
Confidence            68888888776655433343      46677764432111000    00 1123689999998877542           


Q ss_pred             CCCCCCCCCCCcEEEccCCc
Q 048351          278 IPDAPGPMISLRTLTLSDNE  297 (850)
Q Consensus       278 ip~~l~~l~~L~~L~Ls~N~  297 (850)
                      +|..+.  .+|++|+++.+.
T Consensus       171 LP~~LP--~SLk~L~ls~n~  188 (426)
T PRK15386        171 LPEKLP--ESLQSITLHIEQ  188 (426)
T ss_pred             Cccccc--ccCcEEEecccc
Confidence            222221  478888887763

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.62  E-value=8e-05  Score=53.11  Aligned_cols=39  Identities=31%  Similarity=0.549  Sum_probs=27.8

Q ss_pred             CCCcEEEccCCcCCcccchhhhcCCCCcEEEccCCccccc
Q 048351          286 ISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGV  325 (850)
Q Consensus       286 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~  325 (850)
                      ++|++|++++|+|+ .+|..++++++|++|++++|+++..
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~i   39 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISDI   39 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCCC
Confidence            36778888888887 4666678888888888888887643

...

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.60  E-value=2.7e-05  Score=90.80  Aligned_cols=155  Identities=18%  Similarity=0.250  Sum_probs=93.3

Q ss_pred             CCCCEEeCCCCCCC-CCCCcccC-CCCCCcEEEccCCCCCCCCCccccccCCCccEEeCCCCCCCCCcchhhhhcCCCCC
Q 048351          148 SKLEYLDLFAASFS-GPIPPLLG-NLSRLQYLSLGYNKLLRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSL  225 (850)
Q Consensus       148 ~~L~~L~Ls~n~l~-~~~p~~l~-~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L  225 (850)
                      .+|++||+++.... ..-|..++ .||.|++|.+++-.+....-.....++++|+.||+|+.+++..    .+++++++|
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl----~GIS~LknL  197 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL----SGISRLKNL  197 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc----HHHhccccH
Confidence            46777777765432 22233333 4677888877765542222123356788888888888888774    667888888


Q ss_pred             cEEEccCCCCCCCCCccccccccCCCCcccEEEccCCCCCCcc--chhhhcCCCCCCCCCCCCCCcEEEccCCcCCcccc
Q 048351          226 KTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASI--YPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIP  303 (850)
Q Consensus       226 ~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~--~~~l~~l~~ip~~l~~l~~L~~L~Ls~N~l~~~~p  303 (850)
                      ++|.+.+=.+......   ..++++ ++|+.||+|..+....-  ..-.-      +.-..+++|+.||.|++.+.+.+-
T Consensus       198 q~L~mrnLe~e~~~~l---~~LF~L-~~L~vLDIS~~~~~~~~~ii~qYl------ec~~~LpeLrfLDcSgTdi~~~~l  267 (699)
T KOG3665|consen  198 QVLSMRNLEFESYQDL---IDLFNL-KKLRVLDISRDKNNDDTKIIEQYL------ECGMVLPELRFLDCSGTDINEEIL  267 (699)
T ss_pred             HHHhccCCCCCchhhH---HHHhcc-cCCCeeeccccccccchHHHHHHH------HhcccCccccEEecCCcchhHHHH
Confidence            8888887666543221   356666 88888888876654321  11110      112346788888888887776544


Q ss_pred             hhhh-cCCCCcEEE
Q 048351          304 KFFQ-NMFKLEGLS  316 (850)
Q Consensus       304 ~~l~-~l~~L~~L~  316 (850)
                      +.+. .-++|+.+.
T Consensus       268 e~ll~sH~~L~~i~  281 (699)
T KOG3665|consen  268 EELLNSHPNLQQIA  281 (699)
T ss_pred             HHHHHhCccHhhhh
Confidence            4332 334444443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.54  E-value=0.00013  Score=69.02  Aligned_cols=103  Identities=24%  Similarity=0.326  Sum_probs=62.4

Q ss_pred             CCCEEEcCCCcccccCCCccccccCccEEeccCCccccCCchhhcCCCCcCeeccccccce--eecchhHHhcCCCCCEE
Q 048351          473 MLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSIS--GNIPAWIGESLLNLVVL  550 (850)
Q Consensus       473 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~--~~ip~~~~~~l~~L~~L  550 (850)
                      +...+||++|.+...  +.|..++.|.+|.+++|+|+.+-|..-.-+++|..|.|.+|.|.  |.+..- . .++.|++|
T Consensus        43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pL-a-~~p~L~~L  118 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPL-A-SCPKLEYL  118 (233)
T ss_pred             ccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchh-c-cCCcccee
Confidence            455666666666421  34556666677777777776655555555566777777777665  122221 1 46777777


Q ss_pred             EccCCcccccc---CcCcCCCCCcceeecccc
Q 048351          551 DLRSNRFYGKI---PFQLCHLADIQILDLSLN  579 (850)
Q Consensus       551 ~L~~N~l~~~~---p~~l~~l~~L~~L~Ls~N  579 (850)
                      .+-+|.++..-   -..++.+++|++||.+.=
T Consensus       119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             eecCCchhcccCceeEEEEecCcceEeehhhh
Confidence            77777765322   124667888888887653

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.49  E-value=6.7e-05  Score=74.06  Aligned_cols=97  Identities=25%  Similarity=0.272  Sum_probs=64.5

Q ss_pred             ccccccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEeCCCC--CCCCCCCcccCCCCCCcEEEccCCCCCCCCCc
Q 048351          113 GTLNPALLKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAA--SFSGPIPPLLGNLSRLQYLSLGYNKLLRAGNL  190 (850)
Q Consensus       113 g~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n--~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~  190 (850)
                      |.+..-.-.+..|+.|++.+..++..   ..+-.|++|++|.+|.|  .+++.++.....+++|++|+++.|++......
T Consensus        33 g~~~gl~d~~~~le~ls~~n~gltt~---~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl  109 (260)
T KOG2739|consen   33 GKLGGLTDEFVELELLSVINVGLTTL---TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTL  109 (260)
T ss_pred             CCcccccccccchhhhhhhccceeec---ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccccccc
Confidence            33444445556666666666666532   23445788889999988  66666666666778888888888887544444


Q ss_pred             cccccCCCccEEeCCCCCCCCC
Q 048351          191 DWISQLFSLRYLDLSSCNLSKS  212 (850)
Q Consensus       191 ~~l~~l~~L~~L~Ls~n~l~~~  212 (850)
                      ..+..+.+|..||+.+|..+..
T Consensus       110 ~pl~~l~nL~~Ldl~n~~~~~l  131 (260)
T KOG2739|consen  110 RPLKELENLKSLDLFNCSVTNL  131 (260)
T ss_pred             chhhhhcchhhhhcccCCcccc
Confidence            5566677777777777765553

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.29  E-value=0.00014  Score=84.91  Aligned_cols=146  Identities=21%  Similarity=0.238  Sum_probs=91.0

Q ss_pred             CCCCCEEeCCCCCCCCCCCCcccC-CCCCCCEEeCCCCCCCCC-CCcccCCCCCCcEEEccCCCCCCCCCccccccCCCc
Q 048351          122 LHYLRHLDLSFNNFSGSQIPMFIG-SLSKLEYLDLFAASFSGP-IPPLLGNLSRLQYLSLGYNKLLRAGNLDWISQLFSL  199 (850)
Q Consensus       122 l~~L~~L~Ls~n~l~~~~~p~~~~-~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L  199 (850)
                      -.+|++||+++...-...-|..+| .||+|++|.+++-.+... .-....++++|..||+|+..+.   ....++++++|
T Consensus       121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~---nl~GIS~LknL  197 (699)
T KOG3665|consen  121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS---NLSGISRLKNL  197 (699)
T ss_pred             HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc---CcHHHhccccH
Confidence            356788888776543222333343 478888888877666432 2334567788888888877642   33457777888


Q ss_pred             cEEeCCCCCCCCCcchhhhhcCCCCCcEEEccCCCCCCCCCc-cccccccCCCCcccEEEccCCCCCCccchh
Q 048351          200 RYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTI-HRSFSHLNSSPSLETLGLSYNNLTASIYPW  271 (850)
Q Consensus       200 ~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~-~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~  271 (850)
                      ++|.+.+=.+.... ....+.++++|+.||+|.......... ..-.+....+|+|+.||.|++.+...+-..
T Consensus       198 q~L~mrnLe~e~~~-~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~  269 (699)
T KOG3665|consen  198 QVLSMRNLEFESYQ-DLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEE  269 (699)
T ss_pred             HHHhccCCCCCchh-hHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHH
Confidence            88877776666543 234566788888888887655433310 000122233489999999998888765443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.04  E-value=0.0013  Score=60.06  Aligned_cols=102  Identities=17%  Similarity=0.221  Sum_probs=41.0

Q ss_pred             CCCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCCCccccccCccEEeccCCccccCCchhhcCCCCcCeec
Q 048351          447 GQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVA  526 (850)
Q Consensus       447 ~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  526 (850)
                      +++|+.+.+.. .+......+|.++++|+.+++.++ +.......|.++++++.+.+.+ .+.......|..+++|+.++
T Consensus        11 ~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~   87 (129)
T PF13306_consen   11 CSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNID   87 (129)
T ss_dssp             -TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEE
T ss_pred             CCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccc
Confidence            34566666553 344344445555656666666553 4433334455555566666544 33223334455555555555


Q ss_pred             cccccceeecchhHHhcCCCCCEEEccC
Q 048351          527 LEENSISGNIPAWIGESLLNLVVLDLRS  554 (850)
Q Consensus       527 L~~N~l~~~ip~~~~~~l~~L~~L~L~~  554 (850)
                      +..+ +. .++...+.+. +|+.+.+..
T Consensus        88 ~~~~-~~-~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   88 IPSN-IT-EIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             ETTT--B-EEHTTTTTT--T--EEE-TT
T ss_pred             cCcc-cc-EEchhhhcCC-CceEEEECC
Confidence            5443 33 4444444333 555555443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.95  E-value=0.0021  Score=58.76  Aligned_cols=124  Identities=14%  Similarity=0.186  Sum_probs=73.6

Q ss_pred             CcccccCCCCCEEEcCCCcccccCCCccccccCccEEeccCCccccCCchhhcCCCCcCeeccccccceeecchhHHhcC
Q 048351          465 PDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESL  544 (850)
Q Consensus       465 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l  544 (850)
                      ..+|.++++|+.+.+.. .+.......|.++++|+.+.+.++ +...-...|.++++++.+.+.+ .+. .++...+..+
T Consensus         5 ~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~F~~~   80 (129)
T PF13306_consen    5 NNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK-SIGDNAFSNC   80 (129)
T ss_dssp             TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT--EE-TTTTTT-
T ss_pred             HHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccc-cccccccccc
Confidence            35688888999999985 566566678899989999999886 6655667788998999999976 554 6777777678


Q ss_pred             CCCCEEEccCCccccccCcCcCCCCCcceeecccccCcccCCccccCcccC
Q 048351          545 LNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAM  595 (850)
Q Consensus       545 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L  595 (850)
                      ++|+.+++..+ +.......|.+. .|+.+.+.. .+......+|.++++|
T Consensus        81 ~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   81 TNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred             ccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence            99999999776 655566678887 899998876 4444555667666554

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.72  E-value=5.4e-05  Score=74.71  Aligned_cols=86  Identities=23%  Similarity=0.201  Sum_probs=65.6

Q ss_pred             CCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCCccccccCCCcc
Q 048351          121 KLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAGNLDWISQLFSLR  200 (850)
Q Consensus       121 ~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~  200 (850)
                      .+.+.+.|++.++.+++++   -...++.|++|.||-|.|+..-  .+..|++|+.|+|..|.+........+.++++|+
T Consensus        17 dl~~vkKLNcwg~~L~DIs---ic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr   91 (388)
T KOG2123|consen   17 DLENVKKLNCWGCGLDDIS---ICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLR   91 (388)
T ss_pred             HHHHhhhhcccCCCccHHH---HHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhh
Confidence            4667788999999998653   3457899999999999998543  3788899999999988876555556677777777


Q ss_pred             EEeCCCCCCCC
Q 048351          201 YLDLSSCNLSK  211 (850)
Q Consensus       201 ~L~Ls~n~l~~  211 (850)
                      .|.|..|.-.+
T Consensus        92 ~LWL~ENPCc~  102 (388)
T KOG2123|consen   92 TLWLDENPCCG  102 (388)
T ss_pred             hHhhccCCccc
Confidence            77777775443

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.43  E-value=0.0014  Score=65.01  Aligned_cols=63  Identities=29%  Similarity=0.374  Sum_probs=30.9

Q ss_pred             ccCCCCCEEEcCCCcccccCCCccccccCccEEeccCC--ccccCCchhhcCCCCcCeeccccccce
Q 048351          469 LQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHN--NFSGELPSLLKNFTHLRVVALEENSIS  533 (850)
Q Consensus       469 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N--~l~~~~p~~l~~l~~L~~L~L~~N~l~  533 (850)
                      ..+..|+.|.+.+..++..  ..+-.+++|+.|.++.|  ++.+.++.....+++|+++++++|++.
T Consensus        40 d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~  104 (260)
T KOG2739|consen   40 DEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK  104 (260)
T ss_pred             ccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence            3344445555554444421  22334555556666655  444444444444555555555555554

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.14  E-value=0.00043  Score=68.57  Aligned_cols=86  Identities=23%  Similarity=0.228  Sum_probs=50.6

Q ss_pred             CCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCCCccccccCccEEeccCCccccCC-chhhcCCCCcCeec
Q 048351          448 QNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGEL-PSLLKNFTHLRVVA  526 (850)
Q Consensus       448 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~  526 (850)
                      .+.+.|+.-+|.++++.  ....++.|++|.|+-|+|+..-  .+..|++|++|+|..|.|...- -..+.++++|+.|.
T Consensus        19 ~~vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW   94 (388)
T KOG2123|consen   19 ENVKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW   94 (388)
T ss_pred             HHhhhhcccCCCccHHH--HHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence            45666777777766321  2345667777777777776442  3566677777777777665211 12345666666666


Q ss_pred             cccccceeecc
Q 048351          527 LEENSISGNIP  537 (850)
Q Consensus       527 L~~N~l~~~ip  537 (850)
                      |..|.-.|.-+
T Consensus        95 L~ENPCc~~ag  105 (388)
T KOG2123|consen   95 LDENPCCGEAG  105 (388)
T ss_pred             hccCCcccccc
Confidence            66665554433

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=95.63  E-value=0.00059  Score=71.56  Aligned_cols=36  Identities=25%  Similarity=0.287  Sum_probs=15.8

Q ss_pred             CCcEEEccCCCCCCCCCcc-ccccCCCccEEeCCCCC
Q 048351          173 RLQYLSLGYNKLLRAGNLD-WISQLFSLRYLDLSSCN  208 (850)
Q Consensus       173 ~L~~L~Ls~N~l~~~~~~~-~l~~l~~L~~L~Ls~n~  208 (850)
                      .|+.|.+.+++-....... +..+++++++|++.++.
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~  175 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCK  175 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhcce
Confidence            4555666655422222111 22344555555555543

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.01  E-value=0.0079  Score=35.58  Aligned_cols=11  Identities=45%  Similarity=0.899  Sum_probs=4.5

Q ss_pred             CeeeCCCCcCc
Q 048351          695 DFLDLSRNQFS  705 (850)
Q Consensus       695 ~~L~Ls~N~l~  705 (850)
                      ++|||++|+++
T Consensus         3 ~~Ldls~n~l~   13 (22)
T PF00560_consen    3 EYLDLSGNNLT   13 (22)
T ss_dssp             SEEEETSSEES
T ss_pred             cEEECCCCcCE
Confidence            33444444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.72  E-value=0.01  Score=35.07  Aligned_cols=19  Identities=47%  Similarity=0.473  Sum_probs=9.7

Q ss_pred             CCeEecCCCcCccCCCcccc
Q 048351          670 LIGLNLSRNNLTGYITPKIG  689 (850)
Q Consensus       670 L~~L~Ls~N~l~~~ip~~l~  689 (850)
                      |++|||++|+++ .+|++|+
T Consensus         2 L~~Ldls~n~l~-~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTT
T ss_pred             ccEEECCCCcCE-eCChhhc
Confidence            455555555555 4444444

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=93.92  E-value=0.0038  Score=65.71  Aligned_cols=88  Identities=20%  Similarity=0.254  Sum_probs=51.4

Q ss_pred             cCCCCCCEEeCCCCC-CCCCCCCcccCCCCCCCEEeCCCC-CCCCCCCc-ccCCCCCCcEEEccCCCCCCCCCcc-cccc
Q 048351          120 LKLHYLRHLDLSFNN-FSGSQIPMFIGSLSKLEYLDLFAA-SFSGPIPP-LLGNLSRLQYLSLGYNKLLRAGNLD-WISQ  195 (850)
Q Consensus       120 ~~l~~L~~L~Ls~n~-l~~~~~p~~~~~l~~L~~L~Ls~n-~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~~~~~-~l~~  195 (850)
                      .+.+++++|++.++. ++....-..-..+++|++|+|..+ .++...-. -...+++|++|+++.+.-+...... ...+
T Consensus       161 ~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG  240 (483)
T KOG4341|consen  161 SNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRG  240 (483)
T ss_pred             hhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhcc
Confidence            467788888888775 222211222345788888888773 34433222 2246888888888887643332222 3455


Q ss_pred             CCCccEEeCCCC
Q 048351          196 LFSLRYLDLSSC  207 (850)
Q Consensus       196 l~~L~~L~Ls~n  207 (850)
                      +..++.+.+.+|
T Consensus       241 ~~~l~~~~~kGC  252 (483)
T KOG4341|consen  241 CKELEKLSLKGC  252 (483)
T ss_pred             chhhhhhhhccc
Confidence            666666655554

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=93.80  E-value=0.00089  Score=74.87  Aligned_cols=92  Identities=29%  Similarity=0.253  Sum_probs=46.9

Q ss_pred             CCCcEEEccCCCCCCCCCc---cccccCCCccEEeCCCCCCCCC--cchhhhhcCC-CCCcEEEccCCCCCCCCCccccc
Q 048351          172 SRLQYLSLGYNKLLRAGNL---DWISQLFSLRYLDLSSCNLSKS--TDWLQEVDKI-PSLKTLYLEQCDLQLQPTIHRSF  245 (850)
Q Consensus       172 ~~L~~L~Ls~N~l~~~~~~---~~l~~l~~L~~L~Ls~n~l~~~--~~~~~~l~~l-~~L~~L~L~~n~l~~~~~~~~~~  245 (850)
                      ..+..|.|.+|.+...+..   ..+.....|+.|++++|.+...  ..+...+... ..|++|++..|.++.........
T Consensus        87 ~~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~  166 (478)
T KOG4308|consen   87 ASLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAA  166 (478)
T ss_pred             hhHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHH
Confidence            3477888888876333221   1355666777777777777642  1111222222 34555555555555444322223


Q ss_pred             cccCCCCcccEEEccCCCC
Q 048351          246 SHLNSSPSLETLGLSYNNL  264 (850)
Q Consensus       246 ~~~~~~~~L~~L~Ls~N~l  264 (850)
                      .+... ..++.+|++.|.+
T Consensus       167 ~L~~~-~~l~~l~l~~n~l  184 (478)
T KOG4308|consen  167 VLEKN-EHLTELDLSLNGL  184 (478)
T ss_pred             HHhcc-cchhHHHHHhccc
Confidence            33332 5555555555554

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=93.44  E-value=0.00063  Score=76.07  Aligned_cols=98  Identities=26%  Similarity=0.280  Sum_probs=58.8

Q ss_pred             CCCCCcEEEccCCCCCCCCCccccccccCCCCc-ccEEEccCCCCCCccchhhhcCCCCCCCCCCC-CCCcEEEccCCcC
Q 048351          221 KIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPS-LETLGLSYNNLTASIYPWLFNVSSIPDAPGPM-ISLRTLTLSDNEL  298 (850)
Q Consensus       221 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~-L~~L~Ls~N~l~~~~~~~l~~l~~ip~~l~~l-~~L~~L~Ls~N~l  298 (850)
                      ...++++|++.+|.++...-......+... +. +..+++..|++.+.....      +...+..+ ..++.++++.|.|
T Consensus       202 ~~~~le~L~L~~~~~t~~~c~~l~~~l~~~-~~~~~el~l~~n~l~d~g~~~------L~~~l~~~~~~l~~l~l~~nsi  274 (478)
T KOG4308|consen  202 PLSSLETLKLSRCGVTSSSCALLDEVLASG-ESLLRELDLASNKLGDVGVEK------LLPCLSVLSETLRVLDLSRNSI  274 (478)
T ss_pred             ccccHHHHhhhhcCcChHHHHHHHHHHhcc-chhhHHHHHHhcCcchHHHHH------HHHHhcccchhhhhhhhhcCCc
Confidence            355677777777766532221111222222 33 666888888877542222      12223334 6788899999988


Q ss_pred             Ccc----cchhhhcCCCCcEEEccCCccccc
Q 048351          299 DGE----IPKFFQNMFKLEGLSLRGNSLEGV  325 (850)
Q Consensus       299 ~~~----~p~~l~~l~~L~~L~L~~N~l~~~  325 (850)
                      +..    +...+..++.++++.++.|.+...
T Consensus       275 ~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~  305 (478)
T KOG4308|consen  275 TEKGVRDLAEVLVSCRQLEELSLSNNPLTDY  305 (478)
T ss_pred             cccchHHHHHHHhhhHHHHHhhcccCccccH
Confidence            764    334556777899999999987754

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=92.75  E-value=0.0067  Score=58.75  Aligned_cols=83  Identities=22%  Similarity=0.243  Sum_probs=73.2

Q ss_pred             ccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCCCccccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEc
Q 048351          644 GLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDL  723 (850)
Q Consensus       644 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l  723 (850)
                      ...+.||++.|++. ..-..|.-++.|..|+++.|++. ..|..+++...+..+++..|.++ ..|.++..++.++++++
T Consensus        42 kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~  118 (326)
T KOG0473|consen   42 KRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQ  118 (326)
T ss_pred             ceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhh
Confidence            34478999999987 45567888899999999999998 68899999999999999999998 78899999999999999


Q ss_pred             CCCcCc
Q 048351          724 SHNNLS  729 (850)
Q Consensus       724 s~N~l~  729 (850)
                      -.|.+.
T Consensus       119 k~~~~~  124 (326)
T KOG0473|consen  119 KKTEFF  124 (326)
T ss_pred             ccCcch
Confidence            999875

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=91.67  E-value=0.041  Score=62.99  Aligned_cols=39  Identities=21%  Similarity=0.310  Sum_probs=19.2

Q ss_pred             CCCCCCEEEccCCc-CCCCCchhHhhcCcCCCEEecccCc
Q 048351          349 TQKHFSVLDISSAG-ISDSIPDWFSDTSHKLADLNFSHNQ  387 (850)
Q Consensus       349 ~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~L~~L~Ls~N~  387 (850)
                      .+++|+.|+++.+. +++..-..+...+++|+.|.+.++.
T Consensus       241 ~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~  280 (482)
T KOG1947|consen  241 ICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCS  280 (482)
T ss_pred             hcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCC
Confidence            34555555555555 4444334444444455555544443

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=88.86  E-value=0.21  Score=27.32  Aligned_cols=13  Identities=54%  Similarity=0.677  Sum_probs=5.6

Q ss_pred             CCCEEeCCCCCCC
Q 048351          124 YLRHLDLSFNNFS  136 (850)
Q Consensus       124 ~L~~L~Ls~n~l~  136 (850)
                      +|+.|++++|+++
T Consensus         2 ~L~~L~l~~n~L~   14 (17)
T PF13504_consen    2 NLRTLDLSNNRLT   14 (17)
T ss_dssp             T-SEEEETSS--S
T ss_pred             ccCEEECCCCCCC
Confidence            4555555555554

...

>smart00370 LRR Leucine-rich repeats, outliers

Probab=87.98  E-value=0.37  Score=29.70  Aligned_cols=14  Identities=57%  Similarity=0.629  Sum_probs=6.7

Q ss_pred             CCCCeeeCCCCcCc
Q 048351          692 QSLDFLDLSRNQFS  705 (850)
Q Consensus       692 ~~L~~L~Ls~N~l~  705 (850)
                      ++|+.|+|++|+|+
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00370        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            34444455555444

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=87.98  E-value=0.37  Score=29.70  Aligned_cols=14  Identities=57%  Similarity=0.629  Sum_probs=6.7

Q ss_pred             CCCCeeeCCCCcCc
Q 048351          692 QSLDFLDLSRNQFS  705 (850)
Q Consensus       692 ~~L~~L~Ls~N~l~  705 (850)
                      ++|+.|+|++|+|+
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00369        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            34444455555444

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=87.38  E-value=0.025  Score=54.98  Aligned_cols=86  Identities=19%  Similarity=0.226  Sum_probs=43.2

Q ss_pred             cccCCCCCEEEcCCCcccccCCCccccccCccEEeccCCccccCCchhhcCCCCcCeeccccccceeecchhHHhcCCCC
Q 048351          468 WLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNL  547 (850)
Q Consensus       468 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L  547 (850)
                      +......+.||++.|++. ..-..|..++.+.+|+++.|.+. ..|..+.....+..+++.+|..+ ..|.+.. ..+.+
T Consensus        38 i~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~-k~~~~  113 (326)
T KOG0473|consen   38 IASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQK-KEPHP  113 (326)
T ss_pred             hhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCcccc-ccCCc
Confidence            344455566666666554 22334445555555555555554 45555555555555555555554 4444433 24444


Q ss_pred             CEEEccCCcc
Q 048351          548 VVLDLRSNRF  557 (850)
Q Consensus       548 ~~L~L~~N~l  557 (850)
                      +++++.+|.+
T Consensus       114 k~~e~k~~~~  123 (326)
T KOG0473|consen  114 KKNEQKKTEF  123 (326)
T ss_pred             chhhhccCcc
Confidence            4444444443

>smart00370 LRR Leucine-rich repeats, outliers

Probab=86.53  E-value=0.45  Score=29.30  Aligned_cols=21  Identities=29%  Similarity=0.403  Sum_probs=10.8

Q ss_pred             CCcCeeccccccceeecchhHH
Q 048351          520 THLRVVALEENSISGNIPAWIG  541 (850)
Q Consensus       520 ~~L~~L~L~~N~l~~~ip~~~~  541 (850)
                      ++|+.|+|++|+++ .+|...+
T Consensus         2 ~~L~~L~L~~N~l~-~lp~~~f   22 (26)
T smart00370        2 PNLRELDLSNNQLS-SLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCC-cCCHHHc
Confidence            34555555555554 5554443

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=86.53  E-value=0.45  Score=29.30  Aligned_cols=21  Identities=29%  Similarity=0.403  Sum_probs=10.8

Q ss_pred             CCcCeeccccccceeecchhHH
Q 048351          520 THLRVVALEENSISGNIPAWIG  541 (850)
Q Consensus       520 ~~L~~L~L~~N~l~~~ip~~~~  541 (850)
                      ++|+.|+|++|+++ .+|...+
T Consensus         2 ~~L~~L~L~~N~l~-~lp~~~f   22 (26)
T smart00369        2 PNLRELDLSNNQLS-SLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCC-cCCHHHc
Confidence            34555555555554 5554443

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=84.76  E-value=0.25  Score=56.48  Aligned_cols=138  Identities=25%  Similarity=0.289  Sum_probs=85.3

Q ss_pred             cCCCCCCEEeCCCCC-CCCCCCCcccCCCCCCCEEeCCCC-CCCCCCC----cccCCCCCCcEEEccCCCCCCCCCcccc
Q 048351          120 LKLHYLRHLDLSFNN-FSGSQIPMFIGSLSKLEYLDLFAA-SFSGPIP----PLLGNLSRLQYLSLGYNKLLRAGNLDWI  193 (850)
Q Consensus       120 ~~l~~L~~L~Ls~n~-l~~~~~p~~~~~l~~L~~L~Ls~n-~l~~~~p----~~l~~l~~L~~L~Ls~N~l~~~~~~~~l  193 (850)
                      ...+.|+.|.+..+. +....+-.....+++|+.|+++++ ......+    .....+++|+.|+++++..........+
T Consensus       185 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l  264 (482)
T KOG1947|consen  185 SSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL  264 (482)
T ss_pred             hhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence            347888888888773 332112344567899999999873 2221222    2345678999999998874333334444


Q ss_pred             c-cCCCccEEeCCCCC-CCCCcchhhhhcCCCCCcEEEccCCCCCCCCCccccccccCCCCcccEEEccC
Q 048351          194 S-QLFSLRYLDLSSCN-LSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSY  261 (850)
Q Consensus       194 ~-~l~~L~~L~Ls~n~-l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~  261 (850)
                      + .+++|++|.+.++. ++.. .+......+++|++|++++|........   ......+++|+.|.+..
T Consensus       265 ~~~c~~L~~L~l~~c~~lt~~-gl~~i~~~~~~L~~L~l~~c~~~~d~~l---~~~~~~c~~l~~l~~~~  330 (482)
T KOG1947|consen  265 ASRCPNLETLSLSNCSNLTDE-GLVSIAERCPSLRELDLSGCHGLTDSGL---EALLKNCPNLRELKLLS  330 (482)
T ss_pred             HhhCCCcceEccCCCCccchh-HHHHHHHhcCcccEEeeecCccchHHHH---HHHHHhCcchhhhhhhh
Confidence            4 37899999988777 5543 3445556788899999998876422111   11122236666665443

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=83.16  E-value=0.2  Score=48.00  Aligned_cols=82  Identities=28%  Similarity=0.267  Sum_probs=43.9

Q ss_pred             CCCEEeCCCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCCccccc-cCCCccEEeCCCCC-CCCCcchhhhhcCCCCCc
Q 048351          149 KLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAGNLDWIS-QLFSLRYLDLSSCN-LSKSTDWLQEVDKIPSLK  226 (850)
Q Consensus       149 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~-~l~~L~~L~Ls~n~-l~~~~~~~~~l~~l~~L~  226 (850)
                      .++.+|-++..|..+--+.+.+++.++.|.+.++.-...-..+.++ -.++|+.|++++|. |+..  -...+..+++|+
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~--GL~~L~~lknLr  179 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDG--GLACLLKLKNLR  179 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechh--HHHHHHHhhhhH
Confidence            4556666666665544455666666666666666532222222222 23566666666653 4442  334555566666


Q ss_pred             EEEccC
Q 048351          227 TLYLEQ  232 (850)
Q Consensus       227 ~L~L~~  232 (850)
                      .|.+.+
T Consensus       180 ~L~l~~  185 (221)
T KOG3864|consen  180 RLHLYD  185 (221)
T ss_pred             HHHhcC
Confidence            665543

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=81.12  E-value=0.59  Score=28.13  Aligned_cols=17  Identities=41%  Similarity=0.493  Sum_probs=7.5

Q ss_pred             CCCcEEEccCCcCCccc
Q 048351          286 ISLRTLTLSDNELDGEI  302 (850)
Q Consensus       286 ~~L~~L~Ls~N~l~~~~  302 (850)
                      ++|++|+|++|+|++..
T Consensus         2 ~~L~~L~l~~n~i~~~g   18 (24)
T PF13516_consen    2 PNLETLDLSNNQITDEG   18 (24)
T ss_dssp             TT-SEEE-TSSBEHHHH
T ss_pred             CCCCEEEccCCcCCHHH
Confidence            34555555555554433

...

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	850
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		7e-54
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		9e-54
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		6e-19

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  209 bits (531), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 203/660 (30%), Positives = 301/660 (45%), Gaps = 87/660 (13%)
Query: 147 LSKLEYLDLFAASFSGPIPP---LLGNLSRLQYLSLGYNKLLRAGNLDWISQLFSLRYLD 203
           L+ LE LDL A S SG       L      L++L++  NK+  +G++D +S+  +L +LD
Sbjct: 150 LNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKI--SGDVD-VSRCVNLEFLD 206
Query: 204 LSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNN 263
           +SS N S    +L +   +      +L+    +L     R+ S   +   L+ L +S N 
Sbjct: 207 VSSNNFSTGIPFLGDCSALQ-----HLDISGNKLSGDFSRAIS---TCTELKLLNISSNQ 258
Query: 264 LTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIPKFFQNMFK-LEGLSLRGNSL 322
               I P             P+ SL+ L+L++N+  GEIP F       L GL L GN  
Sbjct: 259 FVGPIPPL------------PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHF 306
Query: 323 EGVISEHF------------FSNFSYLKMGPHFPKWLQTQKHFSVLDISSAGISDSIPDW 370
            G +   F             +NFS    G      L   +   VLD+S    S  +P+ 
Sbjct: 307 YGAVPPFFGSCSLLESLALSSNNFS----GELPMDTLLKMRGLKVLDLSFNEFSGELPES 362
Query: 371 FSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSLPSNAFYIDL 430
            ++ S  L  L+ S N  +G                  I  N  + P  +L      + L
Sbjct: 363 LTNLSASLLTLDLSSNNFSGP-----------------ILPNLCQNPKNTLQE----LYL 401
Query: 431 SKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPN 490
             N F+G I    S   + LV L LS N LSG +P      + LR L L  N   G+IP 
Sbjct: 402 QNNGFTGKIPPTLSNCSE-LVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ 460
Query: 491 SCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVL 550
              Y++ + TL L  N+ +GE+PS L N T+L  ++L  N ++G IP WIG  L NL +L
Sbjct: 461 ELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR-LENLAIL 519
Query: 551 DLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIP--------KCFNNFTA-------- 594
            L +N F G IP +L     +  LDL+ N  +G IP        K   NF A        
Sbjct: 520 KLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIK 579
Query: 595 ---MTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDL 651
              M +E     + + F      +   L      +I    + G      +  G +  +D+
Sbjct: 580 NDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDM 639
Query: 652 SSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSS 711
           S N L G +P+EI  +  L  LNL  N+++G I  ++G L+ L+ LDLS N+  G IP +
Sbjct: 640 SYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQA 699
Query: 712 LSQVNRLSVMDLSHNNLSGKIPTGTQLQSFNASVYDGNPELCGLPLPSKCWDEESAPGPA 771
           +S +  L+ +DLS+NNLSG IP   Q ++F  + +  NP LCG PLP +C D  +A G A
Sbjct: 700 MSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RC-DPSNADGYA 757

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  208 bits (530), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 203/660 (30%), Positives = 301/660 (45%), Gaps = 87/660 (13%)
Query: 147 LSKLEYLDLFAASFSGPIPP---LLGNLSRLQYLSLGYNKLLRAGNLDWISQLFSLRYLD 203
           L+ LE LDL A S SG       L      L++L++  NK+  +G++D +S+  +L +LD
Sbjct: 147 LNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKI--SGDVD-VSRCVNLEFLD 203
Query: 204 LSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNN 263
           +SS N S    +L +   +      +L+    +L     R+ S   +   L+ L +S N 
Sbjct: 204 VSSNNFSTGIPFLGDCSALQ-----HLDISGNKLSGDFSRAIS---TCTELKLLNISSNQ 255
Query: 264 LTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIPKFFQNMFK-LEGLSLRGNSL 322
               I P             P+ SL+ L+L++N+  GEIP F       L GL L GN  
Sbjct: 256 FVGPIPPL------------PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHF 303
Query: 323 EGVISEHF------------FSNFSYLKMGPHFPKWLQTQKHFSVLDISSAGISDSIPDW 370
            G +   F             +NFS    G      L   +   VLD+S    S  +P+ 
Sbjct: 304 YGAVPPFFGSCSLLESLALSSNNFS----GELPMDTLLKMRGLKVLDLSFNEFSGELPES 359
Query: 371 FSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSLPSNAFYIDL 430
            ++ S  L  L+ S N  +G                  I  N  + P  +L      + L
Sbjct: 360 LTNLSASLLTLDLSSNNFSG-----------------PILPNLCQNPKNTLQE----LYL 398
Query: 431 SKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPN 490
             N F+G I    S   + LV L LS N LSG +P      + LR L L  N   G+IP 
Sbjct: 399 QNNGFTGKIPPTLSNCSE-LVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ 457
Query: 491 SCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVL 550
              Y++ + TL L  N+ +GE+PS L N T+L  ++L  N ++G IP WIG  L NL +L
Sbjct: 458 ELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR-LENLAIL 516
Query: 551 DLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIP--------KCFNNFTA-------- 594
            L +N F G IP +L     +  LDL+ N  +G IP        K   NF A        
Sbjct: 517 KLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIK 576
Query: 595 ---MTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDL 651
              M +E     + + F      +   L      +I    + G      +  G +  +D+
Sbjct: 577 NDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDM 636
Query: 652 SSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSS 711
           S N L G +P+EI  +  L  LNL  N+++G I  ++G L+ L+ LDLS N+  G IP +
Sbjct: 637 SYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQA 696
Query: 712 LSQVNRLSVMDLSHNNLSGKIPTGTQLQSFNASVYDGNPELCGLPLPSKCWDEESAPGPA 771
           +S +  L+ +DLS+NNLSG IP   Q ++F  + +  NP LCG PLP +C D  +A G A
Sbjct: 697 MSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RC-DPSNADGYA 754

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 93.2 bits (230), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 74/258 (28%), Positives = 120/258 (46%), Gaps = 37/258 (14%)
Query: 506 NNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQL 565
           NN  G +P  +   T L  + +   ++SG IP ++ + +  LV LD   N   G +P  +
Sbjct: 87  NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ-IKTLVTLDFSYNALSGTLPPSI 145
Query: 566 CHLADIQILDLSLNNISGNIPKCFNNF----TAMTQERSYNSSAITFSYAVPSRTTMLPV 621
             L ++  +    N ISG IP  + +F    T+MT  R+  +  I  ++A         +
Sbjct: 146 SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN--------L 197
Query: 622 HIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLT 681
           ++ F                       VDLS N L G+             ++L++N+L 
Sbjct: 198 NLAF-----------------------VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL- 233
Query: 682 GYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGKIPTGTQLQSF 741
            +   K+G  ++L+ LDL  N+  G +P  L+Q+  L  +++S NNL G+IP G  LQ F
Sbjct: 234 AFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRF 293
Query: 742 NASVYDGNPELCGLPLPS 759
           + S Y  N  LCG PLP+
Sbjct: 294 DVSAYANNKCLCGSPLPA 311

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	850
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-180
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-82
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-70
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-46
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-39
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-37
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-71
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-57
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-41
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-31
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-68
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-49
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-42
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-35
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-26
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-21
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-13
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-04
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-66
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-46
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-40
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-40
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-15
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-13
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-58
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-53
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-33
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-20
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-57
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-53
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-39
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-25
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-57
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-52
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-49
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-36
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-36
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-22
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-15
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-45
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-38
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-41
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-37
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-35
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-29
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-28
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-19
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-38
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-37
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-29
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-29
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-21
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-33
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-30
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-27
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-23
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-22
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-21
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-30
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-29
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-20
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-29
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-28
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-27
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-26
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-21
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-29
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-25
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-25
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-24
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-26
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-21
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-21
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-24
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-22
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-22
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-19
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-19
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-10
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-24
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	8e-24
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-22
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-21
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-18
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-07
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-24
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-21
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-20
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-19
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-18
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-16
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-16
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	9e-10
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-22
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-19
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-14
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-12
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-09
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-22
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-19
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-18
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-16
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-12
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-12
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-22
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-21
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-20
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-19
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-18
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-18
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-22
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-21
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-19
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-19
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-12
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-22
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-21
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-20
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-15
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-15
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-14
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-13
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-13
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-06
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-21
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-19
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-15
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-15
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-14
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-14
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-20
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-18
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-17
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-16
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-16
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-15
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-15
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-06
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-19
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-17
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-10
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-10
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	7e-10
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-09
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-19
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-18
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-12
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-19
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-13
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-13
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	9e-13
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-12
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	9e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-19
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-13
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-13
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-11
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	9e-19
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-16
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-14
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-14
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-13
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-12
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	8e-11
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-18
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-18
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-17
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-16
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-15
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-15
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-18
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-16
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-12
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-10
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-09
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-17
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-14
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-11
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-11
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-11
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	9e-11
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-09
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-17
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	8e-16
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-12
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	9e-12
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-10
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-16
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-15
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-14
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-14
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-14
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-14
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-12
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-08
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-15
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-14
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-12
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-10
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-08
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-07
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-14
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-13
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-13
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-12
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	9e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	9e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-13
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	8e-09
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	7e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	9e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-13
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-12
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	8e-13
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	7e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	9e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-12
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-12
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-10
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	6e-10
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	7e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	2e-11
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-10
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	8e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	8e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-10
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-09
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	9e-10
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	7e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	9e-09
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	6e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-08
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-08
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-08
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	5e-08
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	6e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	4e-08
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	4e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-08
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-08
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	7e-08
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	8e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	7e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	8e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	9e-08
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	7e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	6e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	7e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-07
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	4e-07
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	7e-07
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	3e-07
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	4e-06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	4e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	8e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	6e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-06
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	4e-06
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	5e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	8e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	6e-04
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	7e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  537 bits (1385), Expect = e-180
 Identities = 214/814 (26%), Positives = 329/814 (40%), Gaps = 132/814 (16%)

Query: 30  SSSIRCIEEERKALLKFKQGLVDEFGFLSSWGSEGEKKDCCNWRGVRCSNQTGHVKVLDL 89
           +S  + +  E   L+ FK  L D+   L  W S    K+ C + GV C +    V  +DL
Sbjct: 4   ASPSQSLYREIHQLISFKDVLPDK-NLLPDWSSN---KNPCTFDGVTCRD--DKVTSIDL 57

Query: 90  HGTG----------------RVKVLDIQTRVMSG-----------------NASLRGTL- 115
                                ++ L +    ++G                   SL G + 
Sbjct: 58  SSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVT 117

Query: 116 -NPALLKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPP---LLGNL 171
              +L     L+ L++S N             L+ LE LDL A S SG       L    
Sbjct: 118 TLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGC 177

Query: 172 SRLQYLSLGYNKLLRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLE 231
             L++L++  NK+  +G++D +S+  +L +LD+SS N S           IP        
Sbjct: 178 GELKHLAISGNKI--SGDVD-VSRCVNLEFLDVSSNNFS---------TGIPF------- 218

Query: 232 QCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTL 291
                           L    +L+ L +S N L+      +               L+ L
Sbjct: 219 ----------------LGDCSALQHLDISGNKLSGDFSRAIST----------CTELKLL 252

Query: 292 TLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKM---------GPH 342
            +S N+  G IP     +  L+ LSL  N   G I +        L           G  
Sbjct: 253 NISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGA- 309

Query: 343 FPKWLQTQKHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFI- 401
            P +  +      L +SS   S  +P         L  L+ S N+ +G  P  ++++   
Sbjct: 310 VPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSAS 369

Query: 402 LESPGIDISSNHLEGPSPS-----LPSNAFYIDLSKNKFSGPI-SFLCSFSGQNLVYLDL 455
           L +  +D+SSN+  GP          +    + L  N F+G I   L + S   LV L L
Sbjct: 370 LLT--LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCS--ELVSLHL 425

Query: 456 SSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSL 515
           S N LSG +P      + LR L L  N   G+IP    Y++ + TL L  N+ +GE+PS 
Sbjct: 426 SFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSG 485

Query: 516 LKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILD 575
           L N T+L  ++L  N ++G IP WIG  L NL +L L +N F G IP +L     +  LD
Sbjct: 486 LSNCTNLNWISLSNNRLTGEIPKWIG-RLENLAILKLSNNSFSGNIPAELGDCRSLIWLD 544

Query: 576 LSLNNISGNIPKCFNNFTAMT-------------------QERSYNSSAITFSYAVPSRT 616
           L+ N  +G IP      +                      +E     + + F      + 
Sbjct: 545 LNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQL 604

Query: 617 TMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLS 676
             L      +I    + G      +  G +  +D+S N L G +P+EI  +  L  LNL 
Sbjct: 605 NRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLG 664

Query: 677 RNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGKIPTGT 736
            N+++G I  ++G L+ L+ LDLS N+  G IP ++S +  L+ +DLS+NNLSG IP   
Sbjct: 665 HNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMG 724

Query: 737 QLQSFNASVYDGNPELCGLPLPSKCWDEESAPGP 770
           Q ++F  + +  NP LCG PLP            
Sbjct: 725 QFETFPPAKFLNNPGLCGYPLPRCDPSNADGYAH 758

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  277 bits (710), Expect = 3e-82
 Identities = 132/694 (19%), Positives = 223/694 (32%), Gaps = 90/694 (12%)

Query: 95  VKVLDIQTRVMSGNASLRGTLNPALLKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLD 154
           + VL++     + N  LR        +   L  LD+ FN  S    P     L  L+ L+
Sbjct: 27  ITVLNL-----THN-QLRRLPAANFTRYSQLTSLDVGFNTISKL-EPELCQKLPMLKVLN 79

Query: 155 LFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAGNLDWISQLFSLRYLDLSSCNLSKSTD 214
           L     S          + L  L L  N + +  N +   +  +L  LDLS   LS +  
Sbjct: 80  LQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKN-NPFVKQKNLITLDLSHNGLSSTKL 138

Query: 215 WLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFN 274
                 ++ +L+ L L     ++Q           +S SL+ L LS N +          
Sbjct: 139 --GTQVQLENLQELLLSNN--KIQALKSEELDIFANS-SLKKLELSSNQIK--------- 184

Query: 275 VSSIPDAPGPMISLRTLTLSDNELDGEIPK---FFQNMFKLEGLSLRGNSLEGVISEHFF 331
               P     +  L  L L++ +L   + +          +  LSL  + L    +  F 
Sbjct: 185 -EFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFL 243

Query: 332 SNFSYLKMGPHFPKWLQTQKHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGR 391
                               + ++LD+S   ++    D F+    +L      +N +   
Sbjct: 244 GL---------------KWTNLTMLDLSYNNLNVVGNDSFAW-LPQLEYFFLEYNNIQHL 287

Query: 392 FPNYISSMFILES-------PGIDISSNHLEGPSPSLPSNAF---YIDLSKNKFSGPISF 441
           F + +  +F +             IS   L               ++++  N   G  S 
Sbjct: 288 FSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSN 347

Query: 442 LCSFSG-QNLVYLDLSSNLLSGKLPDCW----LQFNMLRILNLANNNFSGKIPNSCGYLQ 496
              F+G  NL YL LS++  S +         L  + L ILNL  N  S    ++  +L 
Sbjct: 348 --MFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLG 405

Query: 497 KMLTLSLHHNNFSGELP-SLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSN 555
            +  L L  N    EL     +   ++  + L  N             + +L  L LR  
Sbjct: 406 HLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFAL-VPSLQRLMLRRV 464

Query: 556 RFYG--KIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQ-ERSYNSSAITFSYAV 612
                   P     L ++ ILDLS NNI+            +   +  +N+     +   
Sbjct: 465 ALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNN----LARLW 520

Query: 613 PSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIG 672
                  P++                    L  +  ++L SN       E   DL  L  
Sbjct: 521 KHANPGGPIYFLKG----------------LSHLHILNLESNGFDEIPVEVFKDLFELKI 564

Query: 673 LNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNR-LSVMDLSHNNLSGK 731
           ++L  NNL            SL  L+L +N  +           R L+ +D+  N     
Sbjct: 565 IDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCT 624

Query: 732 IPTGTQLQSFNASVYDGNPEL-----CGLPLPSK 760
             +     ++    +   PEL     C  P    
Sbjct: 625 CESIAWFVNWINETHTNIPELSSHYLCNTPPHYH 658

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  243 bits (622), Expect = 6e-70
 Identities = 113/654 (17%), Positives = 205/654 (31%), Gaps = 125/654 (19%)

Query: 124 YLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNK 183
                D S    +  Q+P  +   + +  L+L                S+L  L +G+N 
Sbjct: 5   SHEVADCSHLKLT--QVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT 60

Query: 184 LLRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHR 243
            +     +   +L  L+ L+L    LS+ +D  +      +L  L+L      +Q   + 
Sbjct: 61  -ISKLEPELCQKLPMLKVLNLQHNELSQLSD--KTFAFCTNLTELHLMSN--SIQKIKNN 115

Query: 244 SFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSI----------------PDAPGPMIS 287
            F       +L TL LS+N L+++       + ++                        S
Sbjct: 116 PFVKQ---KNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSS 172

Query: 288 LRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWL 347
           L+ L LS N++    P  F  + +L GL L    L   ++E      +            
Sbjct: 173 LKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELA------------ 220

Query: 348 QTQKHFSVLDISSAGISDSIPDWFSDTSH-KLADLNFSHNQMTGRFPNYISSMFILESPG 406
                   L +S++ +S +    F       L  L+ S+N +     +  + +  LE   
Sbjct: 221 --NTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEY-- 276

Query: 407 IDISSNHLEGPSPS------------LPSNAFYIDLSKNKFSGPISFLCSFSG-QNLVYL 453
             +  N+++                 L  +     +S         F  SF   + L +L
Sbjct: 277 FFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDF--SFQWLKCLEHL 334

Query: 454 DLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCG----YLQKMLTLSLHHNNFS 509
           ++  N + G   + +     L+ L+L+N+  S +   +          +  L+L  N  S
Sbjct: 335 NMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKIS 394

Query: 510 GELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLA 569
                      HL V+ L  N I   +       L N+  + L  N++          + 
Sbjct: 395 KIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVP 454

Query: 570 DIQILDLSLNNISG--NIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDI 627
            +Q L L    +    + P  F     +T                               
Sbjct: 455 SLQRLMLRRVALKNVDSSPSPFQPLRNLT------------------------------- 483

Query: 628 VLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLT------ 681
                                +DLS+N +     + +  L  L  L+L  NNL       
Sbjct: 484 --------------------ILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHA 523

Query: 682 --GYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGKIP 733
             G     +  L  L  L+L  N F          +  L ++DL  NNL+    
Sbjct: 524 NPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPA 577

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  175 bits (445), Expect = 4e-46
 Identities = 83/495 (16%), Positives = 153/495 (30%), Gaps = 85/495 (17%)

Query: 253 SLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIPKFFQNMFKL 312
           S E    S+  LT  +   L              ++  L L+ N+L       F    +L
Sbjct: 5   SHEVADCSHLKLT-QVPDDLPT------------NITVLNLTHNQLRRLPAANFTRYSQL 51

Query: 313 EGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAGISDSIPDWFS 372
             L +  N++  +  E        LK                VL++    +S      F+
Sbjct: 52  TSLDVGFNTISKLEPELC-QKLPMLK----------------VLNLQHNELSQLSDKTFA 94

Query: 373 DTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSLPSNAFYIDLSK 432
             ++ L +L+   N +     N       L +  +D+S N L                  
Sbjct: 95  FCTN-LTELHLMSNSIQKIKNNPFVKQKNLIT--LDLSHNGLSSTKLGTQVQL------- 144

Query: 433 NKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPD--CWLQFNMLRILNLANNNFSGKIPN 490
                          +NL  L LS+N +     +       + L+ L L++N      P 
Sbjct: 145 ---------------ENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPG 189

Query: 491 SCGYLQKMLTLSLHHNNFSGELPSLLKNF---THLRVVALEENSISGNIPAWI-GESLLN 546
               + ++  L L++      L   L      T +R ++L  + +S        G    N
Sbjct: 190 CFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTN 249

Query: 547 LVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQER-SYNSSA 605
           L +LDL  N            L  ++   L  NNI        +    +       + + 
Sbjct: 250 LTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTK 309

Query: 606 ITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIM 665
            + S A       +    F                  L  ++ +++  N + G       
Sbjct: 310 QSISLA---SLPKIDDFSF----------------QWLKCLEHLNMEDNDIPGIKSNMFT 350

Query: 666 DLVGLIGLNLSRNNLTGYITPKIG----QLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVM 721
            L+ L  L+LS +  +                L  L+L++N+ S     + S +  L V+
Sbjct: 351 GLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVL 410

Query: 722 DLSHNNLSGKIPTGT 736
           DL  N +  ++    
Sbjct: 411 DLGLNEIGQELTGQE 425

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  155 bits (394), Expect = 2e-39
 Identities = 64/352 (18%), Positives = 119/352 (33%), Gaps = 35/352 (9%)

Query: 407 IDISSNHLEGPSPSLPSNAFYIDLSKNKFSGPISFLCSFSG-QNLVYLDLSSNLLSGKLP 465
            D S   L      LP+N   ++L+ N+     +   +F+    L  LD+  N +S   P
Sbjct: 9   ADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAA--NFTRYSQLTSLDVGFNTISKLEP 66

Query: 466 DCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVV 525
           +   +  ML++LNL +N  S     +  +   +  L L  N+      +      +L  +
Sbjct: 67  ELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITL 126

Query: 526 ALEENSISGNIPAWIGESLLNLVVLDLRSNRFYG--KIPFQLCHLADIQILDLSLNNISG 583
            L  N +S          L NL  L L +N+          +   + ++ L+LS N I  
Sbjct: 127 DLSHNGLSSTKLGTQV-QLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKE 185

Query: 584 NIPKCFNNFTAMTQ-ERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNT 642
             P CF+    +     +                  L   +  ++   +           
Sbjct: 186 FSPGCFHAIGRLFGLFLNNV-----------QLGPSLTEKLCLELANTS----------- 223

Query: 643 LGLVKSVDLSSNKLGGEVPEEI--MDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLS 700
              ++++ LS+++L          +    L  L+LS NNL          L  L++  L 
Sbjct: 224 ---IRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLE 280

Query: 701 RNQFSGGIPSSLSQVNRLSVMDLSHNNLSGKIPTGTQLQSFNASVYDGNPEL 752
            N        SL  +  +  ++L  +     I     L   +   +     L
Sbjct: 281 YNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSIS-LASLPKIDDFSFQWLKCL 331

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  149 bits (379), Expect = 1e-37
 Identities = 76/412 (18%), Positives = 140/412 (33%), Gaps = 60/412 (14%)

Query: 355 VLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHL 414
           V D S   ++    D  ++ +     LN +HNQ+        +    L S  +D+  N +
Sbjct: 8   VADCSHLKLTQVPDDLPTNITV----LNLTHNQLRRLPAANFTRYSQLTS--LDVGFNTI 61

Query: 415 EGPSPSLPSNAF-------YIDLSKNKFSGPISFLCSFSG-QNLVYLDLSSNLLSGKLPD 466
                 L             ++L  N+ S       +F+   NL  L L SN +     +
Sbjct: 62  SK----LEPELCQKLPMLKVLNLQHNELSQLSDK--TFAFCTNLTELHLMSNSIQKIKNN 115

Query: 467 CWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNF--THLRV 524
            +++   L  L+L++N  S     +   L+ +  L L +N         L  F  + L+ 
Sbjct: 116 PFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKK 175

Query: 525 VALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLC---HLADIQILDLSLNNI 581
           + L  N I    P     ++  L  L L + +    +  +LC       I+ L LS + +
Sbjct: 176 LELSSNQIKEFSPGCFH-AIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQL 234

Query: 582 SGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKN 641
           S      F         +  N + +  SY   +   ++    F  +  L +         
Sbjct: 235 STTSNTTFLGL------KWTNLTMLDLSY---NNLNVVGNDSFAWLPQLEY--------- 276

Query: 642 TLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRN---------NLTGYITPKIGQLQ 692
                    L  N +       +  L  +  LNL R+         +L          L+
Sbjct: 277 -------FFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLK 329

Query: 693 SLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGKIPTGTQLQSFNAS 744
            L+ L++  N   G   +  + +  L  + LS++  S +  T     S   S
Sbjct: 330 CLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHS 381

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 44.6 bits (106), Expect = 1e-04
 Identities = 26/160 (16%), Positives = 47/160 (29%), Gaps = 34/160 (21%)

Query: 78  SNQTGHVKVLDLHGTGRVKVLDIQTRVMSGNASLRGTLNPALLKLHYLRHLDLSFNNFSG 137
            +      +  L G   + +L++       N             L  L+ +DL  NN + 
Sbjct: 521 KHANPGGPIYFLKGLSHLHILNL-----ESN-GFDEIPVEVFKDLFELKIIDLGLNNLNT 574

Query: 138 SQIPMFIGSLSKLEYLDLFAASFSGPIPPLLG-NLSRLQYLSLGYNKL-----LRAGNLD 191
                   +   L+ L+L     +     + G     L  L + +N         A  ++
Sbjct: 575 L-PASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVN 633

Query: 192 WISQLF---------------------SLRYLDLSSCNLS 210
           WI++                        +R  D SSC  S
Sbjct: 634 WINETHTNIPELSSHYLCNTPPHYHGFPVRLFDTSSCKDS 673

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  244 bits (626), Expect = 4e-71
 Identities = 117/647 (18%), Positives = 219/647 (33%), Gaps = 103/647 (15%)

Query: 125 LRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKL 184
            ++LDLSFN         F  S  +L+ LDL              +LS L  L L  N  
Sbjct: 30  TKNLDLSFNPLRHLGSYSF-FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP- 87

Query: 185 LRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRS 244
           +++  L   S L SL+ L     NL+   +    +  + +LK L +    +Q    +   
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASLEN--FPIGHLKTLKELNVAHNLIQSFK-LPEY 144

Query: 245 FSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIPK 304
           FS+L    +LE L LS N + +     L  +  +P      +   +L LS N ++   P 
Sbjct: 145 FSNL---TNLEHLDLSSNKIQSIYCTDLRVLHQMP------LLNLSLDLSLNPMNFIQPG 195

Query: 305 FFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISS---- 360
            F+ + +L  L+LR N     + +      + L++        + + +    D S+    
Sbjct: 196 AFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL 254

Query: 361 -------------AGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGI 407
                            D I D F+  ++ ++  +     +        S  F  +   +
Sbjct: 255 CNLTIEEFRLAYLDYYLDDIIDLFNCLTN-VSSFSLVSVTIERVKD--FSYNFGWQH--L 309

Query: 408 DISSNHLEGPSPSLPSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLS--GKLP 465
           ++ +            +   +  + NK     S +      +L +LDLS N LS  G   
Sbjct: 310 ELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEV---DLPSLEFLDLSRNGLSFKGCCS 366

Query: 466 DCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELP-SLLKNFTHLRV 524
                   L+ L+L+ N     + ++   L+++  L   H+N       S+  +  +L  
Sbjct: 367 QSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 425

Query: 525 VALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKI-PFQLCHLADIQILDLSLNNISG 583
           + +                L +L VL +  N F     P     L ++  LDLS   +  
Sbjct: 426 LDISHTHTRVAFNGIFN-GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ 484

Query: 584 NIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTL 643
             P  FN+ +++                                                
Sbjct: 485 LSPTAFNSLSSL------------------------------------------------ 496

Query: 644 GLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQL-QSLDFLDLSRN 702
              + +++S N            L  L  L+ S N++      ++     SL FL+L++N
Sbjct: 497 ---QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 553

Query: 703 QFSGGIPSS--LSQVNRLSVMDLSHNNLSGKIPT---GTQLQSFNAS 744
            F+        L  +     + +    +    P+   G  + S N +
Sbjct: 554 DFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPVLSLNIT 600

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  205 bits (524), Expect = 5e-57
 Identities = 83/494 (16%), Positives = 159/494 (32%), Gaps = 35/494 (7%)

Query: 110 SLRGTLNPALLKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLG 169
           +L    N  +  L  L+ L+++ N     ++P +  +L+ LE+LDL +          L 
Sbjct: 111 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR 170

Query: 170 NLSRLQY----LSLGYNKLLRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSL 225
            L ++      L L  N +          +   L  L L +   S +      +  +  L
Sbjct: 171 VLHQMPLLNLSLDLSLNPM--NFIQPGAFKEIRLHKLTLRNNFDSLNVMKTC-IQGLAGL 227

Query: 226 KTLYLEQCDLQLQPTIHR-SFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGP 284
           +   L   + + +  + +   S L    +L         L   +         I D    
Sbjct: 228 EVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYL-------DDIIDLFNC 280

Query: 285 MISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHF--FSNFSYLKMGPH 342
           + ++ + +L    ++      F   F  + L L         +         ++      
Sbjct: 281 LTNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGG 338

Query: 343 FPKWLQTQKHFSVLDISSAGIS--DSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMF 400
                        LD+S  G+S           T+  L  L+ S N +     N++    
Sbjct: 339 NAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTS-LKYLDLSFNGVITMSSNFLGLEQ 397

Query: 401 ILESPGIDISSNHLEGPSPSLP----SNAFYIDLSKNKFSGPISFLCSFSG-QNLVYLDL 455
           +     +D   ++L+  S         N  Y+D+S        +    F+G  +L  L +
Sbjct: 398 LEH---LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN--GIFNGLSSLEVLKM 452

Query: 456 SSNLLSGKLPDCWLQ-FNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPS 514
           + N                L  L+L+        P +   L  +  L++ HNNF      
Sbjct: 453 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTF 512

Query: 515 LLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQ--LCHLADIQ 572
             K    L+V+    N I  +    +     +L  L+L  N F      Q  L  + D +
Sbjct: 513 PYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQR 572

Query: 573 ILDLSLNNISGNIP 586
            L + +  +    P
Sbjct: 573 QLLVEVERMECATP 586

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  160 bits (408), Expect = 1e-41
 Identities = 85/435 (19%), Positives = 139/435 (31%), Gaps = 64/435 (14%)

Query: 114 TLNPALLKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSG------PIPPL 167
            + P   K   L  L L  N  S + +   I  L+ LE   L    F             
Sbjct: 191 FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA 250

Query: 168 LGNLSRLQYLSLGYNKLLRAGNL--DWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSL 225
           L  L  L         L    +   D  + L ++    L S  + +  D+          
Sbjct: 251 LEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYN----FGW 306

Query: 226 KTLYLEQCDL-QLQPTIHRSFSHLNSS-------------PSLETLGLSYNNLTASIYPW 271
           + L L  C   Q      +S   L  +             PSLE L LS N L+      
Sbjct: 307 QHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFK---- 362

Query: 272 LFNVSSIPDAPGPMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFF 331
                    +     SL+ L LS N +   +   F  + +LE L  + ++L+ +     F
Sbjct: 363 ----GCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVF 417

Query: 332 SNFSYLKMGPHFPKWLQTQKHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGR 391
            +   L                  LDIS      +    F+  S  L  L  + N     
Sbjct: 418 LSLRNLI----------------YLDISHTHTRVAFNGIFNGLSS-LEVLKMAGNSFQEN 460

Query: 392 F-PNYISSMFILESPGIDISSNHLEGPSPSLPSNAF---YIDLSKNKFSGPISFLCSFSG 447
           F P+  + +  L    +D+S   LE  SP+  ++      +++S N F    +    +  
Sbjct: 461 FLPDIFTELRNLTF--LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT--FPYKC 516

Query: 448 -QNLVYLDLSSNLLSGKLPDCWLQ-FNMLRILNLANNNFSGKIPNSC--GYLQKMLTLSL 503
             +L  LD S N +            + L  LNL  N+F+    +     +++    L +
Sbjct: 517 LNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLV 576

Query: 504 HHNNFSGELPSLLKN 518
                    PS  + 
Sbjct: 577 EVERMECATPSDKQG 591

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  130 bits (328), Expect = 1e-31
 Identities = 59/336 (17%), Positives = 101/336 (30%), Gaps = 15/336 (4%)

Query: 408 DISSNHLEGPSPSLPSNAFYIDLSKNKFSGPISFLCSFSG-QNLVYLDLSSNLLSGKLPD 466
                +      +LP +   +DLS N      S+  SF     L  LDLS   +      
Sbjct: 13  QCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSY--SFFSFPELQVLDLSRCEIQTIEDG 70

Query: 467 CWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVA 526
            +   + L  L L  N        +   L  +  L     N +      + +   L+ + 
Sbjct: 71  AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN 130

Query: 527 LEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQI----LDLSLNNIS 582
           +  N I          +L NL  LDL SN+        L  L  + +    LDLSLN ++
Sbjct: 131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN 190

Query: 583 GNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNT 642
              P  F            N  ++            L VH             E   K+ 
Sbjct: 191 FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA 250

Query: 643 LGLVKSVDLSSNKL------GGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDF 696
           L  + ++ +   +L        ++ +    L  +   +L    +                
Sbjct: 251 LEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER--VKDFSYNFGWQH 308

Query: 697 LDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGKI 732
           L+L   +F       L  + RL+       N   ++
Sbjct: 309 LELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEV 344

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  238 bits (608), Expect = 3e-68
 Identities = 94/720 (13%), Positives = 196/720 (27%), Gaps = 137/720 (19%)

Query: 37  EEERKALLKFKQGLVDEFGFLSSWGSEGEKKDC----------CNWRGVRCSNQTGHVKV 86
           +      L      + ++  L         K+            NW   +  +  G    
Sbjct: 15  DAIVPIKLSRTAEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPG 74

Query: 87  LDLHGTGRVKVLDIQTRVMSGNASLRGTLNPALLKLHYLRHLDLSFNNFSGSQIPMFIGS 146
           + L+  GRV  L +      G     G +  A+ +L  L  L L  +    ++       
Sbjct: 75  VSLNSNGRVTGLSL-----EGF-GASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKG 128

Query: 147 LSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKL----LRAGNLDWISQLFSLRYL 202
           +S     +             +    R  +  L  + +     +               +
Sbjct: 129 ISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQI 188

Query: 203 DLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYN 262
              S N++      + V ++  L+  Y+              F   N   + E     Y 
Sbjct: 189 GQLSNNITF---VSKAVMRLTKLRQFYMGNS----------PFVAENICEAWENENSEYA 235

Query: 263 NLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSL 322
                         +       +  L  + + +     ++P F + + +++ +++  N  
Sbjct: 236 QQY----------KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRG 285

Query: 323 EGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAGISD-SIPDWFSDTSHKLADL 381
                         LK            +   ++ I    +    +         KL  L
Sbjct: 286 ISGEQ---------LKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMK-KLGML 335

Query: 382 NFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSLPSNA---FYIDLSKNKFSGP 438
              +NQ+ G       S   L S  ++++ N +     +          +  + NK    
Sbjct: 336 ECLYNQLEG-KLPAFGSEIKLAS--LNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYI 392

Query: 439 ISFLCSFSGQNLVYLDLSSNLLSG-------KLPDCWLQFNMLRILNLANNNFSGKIPNS 491
            +   + S   +  +D S N +          L     +   +  +NL+NN  S      
Sbjct: 393 PNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKEL 452

Query: 492 CGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLD 551
                 + +++L  N  +  +P                 +   +       +   L  +D
Sbjct: 453 FSTGSPLSSINLMGNMLTE-IPK----------------NSLKDENENFK-NTYLLTSID 494

Query: 552 LRSNRFYGKIP--FQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFS 609
           LR N+   K+   F+   L  +  +DLS N+ S   P    N + +              
Sbjct: 495 LRFNKL-TKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLK------------- 539

Query: 610 YAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVG 669
                                             G+    D   N+   E PE I     
Sbjct: 540 --------------------------------GFGIRNQRDAQGNRTLREWPEGITLCPS 567

Query: 670 LIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLS 729
           L  L +  N++   +  KI    ++  LD+  N       S +       +  L ++   
Sbjct: 568 LTQLQIGSNDIRK-VNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  182 bits (465), Expect = 6e-49
 Identities = 80/501 (15%), Positives = 147/501 (29%), Gaps = 100/501 (19%)

Query: 117 PALLKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQY 176
            A+++L  LR   +  + F               EY   +             NL  L  
Sbjct: 200 KAVMRLTKLRQFYMGNSPFVAE-NICEAWENENSEYAQQY-----KTEDLKWDNLKDLTD 253

Query: 177 LSLGYNKLLRAGNL-DWISQLFSLRYLDLSSCNLSKSTDW------LQEVDKIPSLKTLY 229
           + +     L    L  ++  L  ++ ++++                L +      ++ +Y
Sbjct: 254 VEVYNCPNL--TKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIY 311

Query: 230 LEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLR 289
           +   +L+  P +  S   +     L  L   YN L                A G  I L 
Sbjct: 312 IGYNNLKTFP-VETSLQKM---KKLGMLECLYNQLE-----------GKLPAFGSEIKLA 356

Query: 290 TLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQT 349
           +L L+ N++      F     ++E LS   N L+ + +     + S +            
Sbjct: 357 SLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMS----------- 405

Query: 350 QKHFSVLDISSAGISDSIPDWFSD------TSHKLADLNFSHNQMTGRFPNYISSMFILE 403
                 +D S   I       F            ++ +N S+NQ++       S+   L 
Sbjct: 406 -----AIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLS 460

Query: 404 SPGIDISSNHLEGPSPSLPSNAF----------YIDLSKNKFSGPISFLCSFSGQNLVYL 453
           S  I++  N L     +   +             IDL  NK +       + +   LV +
Sbjct: 461 S--INLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGI 518

Query: 454 DLSSNLLSGKLPDCWLQ------FNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNN 507
           DLS N  S   P   L       F +    +   N    + P        +  L +  N+
Sbjct: 519 DLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND 577

Query: 508 FSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCH 567
                                       +   I     N+ VLD++ N         +C 
Sbjct: 578 IRK-------------------------VNEKI---TPNISVLDIKDNPNISIDLSYVCP 609

Query: 568 LADIQILDLSLNNISGNIPKC 588
             +  +  L  +    +I  C
Sbjct: 610 YIEAGMYMLFYDKTQ-DIRGC 629

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  161 bits (410), Expect = 8e-42
 Identities = 55/466 (11%), Positives = 126/466 (27%), Gaps = 98/466 (21%)

Query: 287 SLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKW 346
            +  L+L      G +P     + +LE L+L  +  +           S           
Sbjct: 82  RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANM-------- 133

Query: 347 LQTQKHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPG 406
                                                        F +Y       +   
Sbjct: 134 ------------------------------SDEQKQKMRMHYQKTFVDYDPREDFSDLIK 163

Query: 407 IDISSNHLEGPSPS---LPSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGK 463
             I+S+  +        +      I    N  +     +   +   L    + ++    +
Sbjct: 164 DCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLT--KLRQFYMGNSPFVAE 221

Query: 464 LPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLR 523
                         N                L+ +  + +++     +LP+ LK    ++
Sbjct: 222 NI-----CEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQ 276

Query: 524 VVALEENSI--------SGNIPAWIGESLLNLVVLDLRSNRF-YGKIPFQLCHLADIQIL 574
           ++ +  N               A        + ++ +  N      +   L  +  + +L
Sbjct: 277 LINVACNRGISGEQLKDDWQALADAP-VGEKIQIIYIGYNNLKTFPVETSLQKMKKLGML 335

Query: 575 DLSLNNISGNIPKCFNNFTAMTQ-ERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWK 633
           +   N + G +P  F +   +     +YN   IT           +P +           
Sbjct: 336 ECLYNQLEGKLP-AFGSEIKLASLNLAYNQ--ITE----------IPANFC--------- 373

Query: 634 GSEYEYKNTLGLVKSVDLSSNKLGGEVPE--EIMDLVGLIGLNLSRNNLTGY-------I 684
                       V+++  + NKL   +P   +   +  +  ++ S N +          +
Sbjct: 374 -------GFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPL 425

Query: 685 TPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSG 730
            P   +  ++  ++LS NQ S       S  + LS ++L  N L+ 
Sbjct: 426 DPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTE 471

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  142 bits (361), Expect = 1e-35
 Identities = 48/377 (12%), Positives = 115/377 (30%), Gaps = 63/377 (16%)

Query: 373 DTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGP-SPSLPSN------A 425
           +++ ++  L+      +GR P+ I  +  LE   + + S+  +       P         
Sbjct: 78  NSNGRVTGLSLEGFGASGRVPDAIGQLTELEV--LALGSHGEKVNERLFGPKGISANMSD 135

Query: 426 FYIDLSKNKFSGPI-SFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNF 484
                 +  +      +       +L+   ++S+     +            +   +NN 
Sbjct: 136 EQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNI 195

Query: 485 SGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESL 544
           +  +  +   L K+    + ++ F  E         +      E              +L
Sbjct: 196 TF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENS-----EYAQQYKTEDLKWD-NL 248

Query: 545 LNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSS 604
            +L  +++ +     K+P  L  L ++Q+++++ N       +  +++ A+         
Sbjct: 249 KDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGIS-GEQLKDDWQALADAPVGEK- 306

Query: 605 AITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKL-GGEVPEE 663
                                                    ++ + +  N L    V   
Sbjct: 307 -----------------------------------------IQIIYIGYNNLKTFPVETS 325

Query: 664 IMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDL 723
           +  +  L  L    N L G + P  G    L  L+L+ NQ +    +      ++  +  
Sbjct: 326 LQKMKKLGMLECLYNQLEGKL-PAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSF 384

Query: 724 SHNNLSGKIPTGTQLQS 740
           +HN L   IP     +S
Sbjct: 385 AHNKLKY-IPNIFDAKS 400

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  113 bits (284), Expect = 4e-26
 Identities = 31/289 (10%), Positives = 79/289 (27%), Gaps = 51/289 (17%)

Query: 474 LRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSG----ELPSLLKNFTHLRVVALEE 529
           +  L+L     SG++P++ G L ++  L+L  +          P  +             
Sbjct: 83  VTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMR 142

Query: 530 NSISGNIPAWIG-ESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKC 588
                    +   E   +L+   + S+     I            +    NNI+  + K 
Sbjct: 143 MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKA 201

Query: 589 FNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKS 648
               T + Q                                     S +  +N     ++
Sbjct: 202 VMRLTKLRQ--------------------------------FYMGNSPFVAENICEAWEN 229

Query: 649 VDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQF---- 704
            +    +       +  +L  L  + +        +   +  L  +  ++++ N+     
Sbjct: 230 ENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGE 289

Query: 705 ----SGGIPSSLSQVNRLSVMDLSHNNL-SGKIPTG----TQLQSFNAS 744
                    +      ++ ++ + +NNL +  + T      +L      
Sbjct: 290 QLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECL 338

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 99.0 bits (247), Expect = 1e-21
 Identities = 30/258 (11%), Positives = 73/258 (28%), Gaps = 38/258 (14%)

Query: 478 NLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIP 537
           N   + +  +   S     ++  LSL     SG +P  +   T L V+AL  +    N  
Sbjct: 63  NKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNER 122

Query: 538 AWIGES---LLNLVVLDLRSNRFYGKIPFQL--CHLADIQILDLSLNNISGNIPKCFNNF 592
            +  +     ++          +             +D+    ++ +    +I K     
Sbjct: 123 LFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRIT 182

Query: 593 TAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLS 652
              TQ    +           +  T +   +                   L  ++   + 
Sbjct: 183 LKDTQIGQLS-----------NNITFVSKAVM-----------------RLTKLRQFYMG 214

Query: 653 SNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSL 712
           ++    E   E  +       N            K   L+ L  +++        +P+ L
Sbjct: 215 NSPFVAENICEAWEN-----ENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL 269

Query: 713 SQVNRLSVMDLSHNNLSG 730
             +  + +++++ N    
Sbjct: 270 KALPEMQLINVACNRGIS 287

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 70.8 bits (174), Expect = 8e-13
 Identities = 17/122 (13%), Positives = 37/122 (30%), Gaps = 6/122 (4%)

Query: 641 NTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTG----YITPKIGQLQSLDF 696
           N+ G V  + L      G VP+ I  L  L  L L  +        +    I    S + 
Sbjct: 78  NSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ 137

Query: 697 LDLSRNQFSGGIPSSLSQVN--RLSVMDLSHNNLSGKIPTGTQLQSFNASVYDGNPELCG 754
               R  +         + +   L    ++ +     I   +++   +  +   +  +  
Sbjct: 138 KQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF 197

Query: 755 LP 756
           + 
Sbjct: 198 VS 199

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 42.3 bits (100), Expect = 7e-04
 Identities = 9/47 (19%), Positives = 17/47 (36%)

Query: 688 IGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGKIPT 734
           +     +  L L     SG +P ++ Q+  L V+ L  +        
Sbjct: 77  LNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERL 123

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  222 bits (567), Expect = 5e-66
 Identities = 84/314 (26%), Positives = 133/314 (42%), Gaps = 40/314 (12%)

Query: 453 LDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSG--KIPNSCGYLQKMLTLSLHH-NNFS 509
            D  +    G L D   Q   +  L+L+  N      IP+S   L  +  L +   NN  
Sbjct: 31  TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV 90

Query: 510 GELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLA 569
           G +P  +   T L  + +   ++SG IP ++   +  LV LD   N   G +P  +  L 
Sbjct: 91  GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLS-QIKTLVTLDFSYNALSGTLPPSISSLP 149

Query: 570 DIQILDLSLNNISGNIPKCFNNFTAMTQER--SYNSSAITFSYAVPSRTTMLPVHIFFDI 627
           ++  +    N ISG IP  + +F+ +      S N      +  +P              
Sbjct: 150 NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR----LTGKIPP------------- 192

Query: 628 VLLTWKGSEYEYKNTLGLVK--SVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYIT 685
                         T   +    VDLS N L G+             ++L++N+L   + 
Sbjct: 193 --------------TFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL- 237

Query: 686 PKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGKIPTGTQLQSFNASV 745
            K+G  ++L+ LDL  N+  G +P  L+Q+  L  +++S NNL G+IP G  LQ F+ S 
Sbjct: 238 GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSA 297

Query: 746 YDGNPELCGLPLPS 759
           Y  N  LCG PLP+
Sbjct: 298 YANNKCLCGSPLPA 311

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  168 bits (427), Expect = 2e-46
 Identities = 79/327 (24%), Positives = 129/327 (39%), Gaps = 55/327 (16%)

Query: 34  RCIEEERKALLKFKQGLVDEFGFLSSWGSEGEKKDCCN--WRGVRCSN--QTGHVKVLDL 89
            C  ++++ALL+ K+ L +    LSSW       DCCN  W GV C    QT  V  LDL
Sbjct: 2   LCNPQDKQALLQIKKDLGNP-TTLSSWLPTT---DCCNRTWLGVLCDTDTQTYRVNNLDL 57

Query: 90  HGTGRVKVLDI----------QTRVMSGNASLRGTLNPALLKLHYLRHLDLSFNNFSGSQ 139
            G    K   I              + G  +L G + PA+ KL  L +L ++  N SG+ 
Sbjct: 58  SGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGA- 116

Query: 140 IPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAGNL-DWISQLFS 198
           IP F+  +  L  LD    + SG +PP + +L  L  ++   N++  +G + D       
Sbjct: 117 IPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRI--SGAIPDSYGSFSK 174

Query: 199 L-RYLDLSSCNLSKSTDWLQEVDKIP------SLKTLYLEQCDLQLQPTIHRSFSHLNSS 251
           L   + +S   L+           IP      +L  + L +    L+      F      
Sbjct: 175 LFTSMTISRNRLTGK---------IPPTFANLNLAFVDLSRN--MLEGDASVLFGSD--- 220

Query: 252 PSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIPKFFQNMFK 311
            + + + L+ N+L   +   +              +L  L L +N + G +P+    +  
Sbjct: 221 KNTQKIHLAKNSLAFDL-GKVGL----------SKNLNGLDLRNNRIYGTLPQGLTQLKF 269

Query: 312 LEGLSLRGNSLEGVI-SEHFFSNFSYL 337
           L  L++  N+L G I        F   
Sbjct: 270 LHSLNVSFNNLCGEIPQGGNLQRFDVS 296

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  151 bits (383), Expect = 1e-40
 Identities = 72/314 (22%), Positives = 114/314 (36%), Gaps = 57/314 (18%)

Query: 290 TLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGV--ISEHFFSNFSYLKMGPHFPKWL 347
           T    +    G +       +++  L L G +L     I     +N  YL          
Sbjct: 30  TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSL-ANLPYLN--------- 79

Query: 348 QTQKHFSVLDISSA-GISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPG 406
                   L I     +   IP   +  + +L  L  +H  ++G  P+++S +  L +  
Sbjct: 80  -------FLYIGGINNLVGPIPPAIAKLT-QLHYLYITHTNVSGAIPDFLSQIKTLVT-- 129

Query: 407 IDISSNHLEGPSPS---LPSNAFYIDLSKNKFSGPI-SFLCSFSGQNLVYLDLSSNLLSG 462
           +D S N L G  P       N   I    N+ SG I     SFS      + +S N L+G
Sbjct: 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSK-LFTSMTISRNRLTG 188

Query: 463 KLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHL 522
           K+P  +   N L  ++L+ N   G      G  +    + L  N+ + +L  +       
Sbjct: 189 KIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKV------- 240

Query: 523 RVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNIS 582
                                  NL  LDLR+NR YG +P  L  L  +  L++S NN+ 
Sbjct: 241 -------------------GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281

Query: 583 GNIPK--CFNNFTA 594
           G IP+      F  
Sbjct: 282 GEIPQGGNLQRFDV 295

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  149 bits (378), Expect = 5e-40
 Identities = 59/232 (25%), Positives = 98/232 (42%), Gaps = 17/232 (7%)

Query: 375 SHKLADLNFSHNQMTGRF--PNYISSMFILESPGIDISS-NHLEGPSPS----LPSNAFY 427
           ++++ +L+ S   +   +  P+ ++++  L    + I   N+L GP P     L +   Y
Sbjct: 49  TYRVNNLDLSGLNLPKPYPIPSSLANLPYLNF--LYIGGINNLVGPIPPAIAKL-TQLHY 105

Query: 428 IDLSKNKFSGPI-SFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSG 486
           + ++    SG I  FL       LV LD S N LSG LP        L  +    N  SG
Sbjct: 106 LYITHTNVSGAIPDFLSQIK--TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG 163

Query: 487 KIPNSCGYLQKMLT-LSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLL 545
            IP+S G   K+ T +++  N  +G++P    N   L  V L  N + G+     G S  
Sbjct: 164 AIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFG-SDK 221

Query: 546 NLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQ 597
           N   + L  N     +  ++    ++  LDL  N I G +P+       +  
Sbjct: 222 NTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHS 272

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 77.6 bits (192), Expect = 1e-15
 Identities = 25/104 (24%), Positives = 46/104 (44%), Gaps = 7/104 (6%)

Query: 648 SVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTG--YITPKIGQLQSLDFLDLS-RNQF 704
           + D  +    G + +       +  L+LS  NL     I   +  L  L+FL +   N  
Sbjct: 30  TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL 89

Query: 705 SGGIPSSLSQVNRLSVMDLSHNNLSGKIPTG----TQLQSFNAS 744
            G IP +++++ +L  + ++H N+SG IP        L + + S
Sbjct: 90  VGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFS 133

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 70.3 bits (173), Expect = 4e-13
 Identities = 25/86 (29%), Positives = 35/86 (40%), Gaps = 4/86 (4%)

Query: 105 MSGNASLRGTLNPALLKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPI 164
           ++ N SL   L   +     L  LDL  N   G+ +P  +  L  L  L++   +  G I
Sbjct: 228 LAKN-SLAFDL-GKVGLSKNLNGLDLRNNRIYGT-LPQGLTQLKFLHSLNVSFNNLCGEI 284

Query: 165 PPLLGNLSRLQYLSLGYNKLLRAGNL 190
           P   GNL R    +   NK L    L
Sbjct: 285 PQG-GNLQRFDVSAYANNKCLCGSPL 309

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  213 bits (545), Expect = 3e-58
 Identities = 90/703 (12%), Positives = 192/703 (27%), Gaps = 143/703 (20%)

Query: 45  KFKQGLVDEFGFLSSWGSEGEKKDCCNWRGVRCSNQTGHVKVLDLHGTGRVKVLDIQTRV 104
           ++  G ++      +W    E     +  GV   N  G V  L L               
Sbjct: 287 RYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNN-GRVTGLSL--------------- 330

Query: 105 MSGNASLRGTLNPALLKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPI 164
            +G    +G +  A+ +L  L+ L    ++ + S        L+     +          
Sbjct: 331 -AGF-GAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYK 388

Query: 165 PPLLGNLSRLQYLSLGYNKLLRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVD---- 220
              L    RL    L  + + R      +  +     + L    +   T+ +  +     
Sbjct: 389 KMFLDYDQRLNLSDLLQDAINRNPE---MKPIKKDSRISLKDTQIGNLTNRITFISKAIQ 445

Query: 221 KIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPD 280
           ++  L+ +Y               F++ N +   E     Y               +   
Sbjct: 446 RLTKLQIIYFANS----------PFTYDNIAVDWEDANSDYAKQY----------ENEEL 485

Query: 281 APGPMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMG 340
           +   +  L  + L +     ++P F  ++ +L+ L++  N                    
Sbjct: 486 SWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWT------- 538

Query: 341 PHFPKWLQTQKHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMF 400
                   T     +  +    + +           KL  L+  HN++         +  
Sbjct: 539 -RLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR--HLEAFGTNV 595

Query: 401 ILESPGIDISSNHLEGPSPSLPSNAF-------YIDLSKNKFSGPISFLCSFSGQNLVYL 453
            L    + +  N +E     +P +          +  S NK     +   + S   +  +
Sbjct: 596 KLTD--LKLDYNQIE----EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSV 649

Query: 454 DLSSNLLSGKLPDC-----WLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNF 508
           D S N +  +  +        +      + L+ N               + T+ L +N  
Sbjct: 650 DFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLM 709

Query: 509 SGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIP--FQLC 566
           +  +P                 +           +   L  +DLR N+    +   F+  
Sbjct: 710 T-SIPE----------------NSLKPKDGNYK-NTYLLTTIDLRFNKL-TSLSDDFRAT 750

Query: 567 HLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFD 626
            L  +  +D+S N  S   P    N + +                               
Sbjct: 751 TLPYLSNMDVSYNCFSS-FPTQPLNSSQLK------------------------------ 779

Query: 627 IVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITP 686
                            G+    D   N++  + P  I     LI L +  N++   +  
Sbjct: 780 ---------------AFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK-VDE 823

Query: 687 KIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLS 729
           K+     L  LD++ N       +S+       +  L ++   
Sbjct: 824 KL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  199 bits (507), Expect = 2e-53
 Identities = 92/646 (14%), Positives = 183/646 (28%), Gaps = 124/646 (19%)

Query: 134 NFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAGNLDWI 193
           +  G Q  + + +  ++  L L      G +P  +G L+ L+ LS G +    +G L + 
Sbjct: 309 DMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRL-FG 367

Query: 194 SQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPS 253
            +  +    +     +      +  +D    L    L Q  +   P +         S  
Sbjct: 368 DEELTPDMSEERKHRIRMHYKKMF-LDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLK 426

Query: 254 LETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIPKFFQNMFKLE 313
              +G   N +T            I  A   +  L+ +  +++    +           +
Sbjct: 427 DTQIGNLTNRIT-----------FISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSD 475

Query: 314 GLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAGISDSIPDWFSD 373
                 N       E  +SN   L                  +++ +      +PD+  D
Sbjct: 476 YAKQYENE------ELSWSNLKDLT----------------DVELYNCPNMTQLPDFLYD 513

Query: 374 TSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSLPSNAFYIDLSKN 433
              +L  LN + N+             + +      +   ++              +  N
Sbjct: 514 LP-ELQSLNIACNRGISAAQLKADWTRLADDED---TGPKIQ-----------IFYMGYN 558

Query: 434 KFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCG 493
                 +         L  LD   N +   L   +     L  L L  N     IP    
Sbjct: 559 NLEEFPASASLQKMVKLGLLDCVHNKVR-HLEA-FGTNVKLTDLKLDYNQIEE-IPEDFC 615

Query: 494 YLQKMLT-LSLHHNNFSGELPSL--LKNFTHLRVVALEENSISGNIPAWIGESL-----L 545
                +  L   HN     +P++   K+   +  V    N I       I  S+     +
Sbjct: 616 AFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGS-EGRNISCSMDDYKGI 673

Query: 546 NLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSA 605
           N   + L  N             + I  + LS N ++                       
Sbjct: 674 NASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT----------------------- 710

Query: 606 ITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIM 665
                ++P  +       + +  LLT                 +DL  NKL   + ++  
Sbjct: 711 -----SIPENSLKPKDGNYKNTYLLTT----------------IDLRFNKLT-SLSDDFR 748

Query: 666 --DLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSR------NQFSGGIPSSLSQVNR 717
              L  L  +++S N  +     +      L    +        N+     P+ ++    
Sbjct: 749 ATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPS 807

Query: 718 LSVMDLSHNNLSGKIPTG--TQLQSFNASVYDGNPELCGLPLPSKC 761
           L  + +  N++  K+      QL   + +    NP    + + S C
Sbjct: 808 LIQLQIGSNDIR-KVDEKLTPQLYILDIA---DNP-NISIDVTSVC 848

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  137 bits (347), Expect = 2e-33
 Identities = 55/374 (14%), Positives = 114/374 (30%), Gaps = 52/374 (13%)

Query: 113 GTLNPALLKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLS 172
             L         ++   + +NN         +  + KL  LD              G   
Sbjct: 538 TRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR--HLEAFGTNV 595

Query: 173 RLQYLSLGYNKLLRAGNL--DWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYL 230
           +L  L L YN++     +  D+ +    +  L  S   L    +       +  + ++  
Sbjct: 596 KLTDLKLDYNQI---EEIPEDFCAFTDQVEGLGFSHNKLKYIPNIF-NAKSVYVMGSVDF 651

Query: 231 EQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRT 290
               +  +              +  T+ LSYN +               +       + T
Sbjct: 652 SYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ----------KFPTELFATGSPIST 701

Query: 291 LTLSDNELD-------GEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHF 343
           + LS+N +              ++N + L  + LR N L  +  +   +   YL      
Sbjct: 702 IILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLS----- 756

Query: 344 PKWLQTQKHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSH------NQMTGRFPNYIS 397
                       +D+S    S S P    ++S +L      H      N++  ++P  I+
Sbjct: 757 -----------NMDVSYNCFS-SFPTQPLNSS-QLKAFGIRHQRDAEGNRILRQWPTGIT 803

Query: 398 SMFILESPGIDISSNHLEGPSPSLPSNAFYIDLSKNKF-SGPISFLCSFSGQNLVYLDLS 456
           +   L    + I SN +      L    + +D++ N   S  ++ +C +    +  L   
Sbjct: 804 TCPSLIQ--LQIGSNDIRKVDEKLTPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYD 861

Query: 457 SNLLSGKLPDCWLQ 470
                       ++
Sbjct: 862 KTQDIRGCDALGIE 875

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 94.6 bits (235), Expect = 6e-20
 Identities = 30/268 (11%), Positives = 75/268 (27%), Gaps = 28/268 (10%)

Query: 477 LNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNI 536
            N   + +  +         ++  LSL      G +P  +   T L+V++   +S + + 
Sbjct: 304 FNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSG 363

Query: 537 PAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMT 596
             +  E L   +  + +           L +   + + DL  + I+ N          + 
Sbjct: 364 RLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRN-----PEMKPIK 418

Query: 597 QERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKL 656
           ++   +         + +R T +   I                   L  ++ +  +++  
Sbjct: 419 KDSRISLKDTQIG-NLTNRITFISKAIQ-----------------RLTKLQIIYFANSPF 460

Query: 657 GGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVN 716
             +        V     N                L+ L  ++L        +P  L  + 
Sbjct: 461 TYDNIA-----VDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLP 515

Query: 717 RLSVMDLSHNNLSGKIPTGTQLQSFNAS 744
            L  ++++ N                  
Sbjct: 516 ELQSLNIACNRGISAAQLKADWTRLADD 543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  206 bits (525), Expect = 4e-57
 Identities = 105/608 (17%), Positives = 193/608 (31%), Gaps = 86/608 (14%)

Query: 125 LRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKL 184
            +++DLSFN     +   F  + S+L++LDL               L  L  L L  N +
Sbjct: 34  TKNIDLSFNPLKILKSYSF-SNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPI 92

Query: 185 LRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRS 244
            ++ +    S L SL  L      L+        + ++ +LK L +    +     +   
Sbjct: 93  -QSFSPGSFSGLTSLENLVAVETKLASLES--FPIGQLITLKKLNVAHNFIH-SCKLPAY 148

Query: 245 FSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIPK 304
           FS+L    +L  + LSYN +       L  +   P          +L +S N +D    +
Sbjct: 149 FSNL---TNLVHVDLSYNYIQTITVNDLQFLRENP------QVNLSLDMSLNPIDFIQDQ 199

Query: 305 FFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAGIS 364
            FQ + KL  L+LRGN     I +    N + L +       L   +     ++      
Sbjct: 200 AFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHV-----HRLILGEFKDERNLEI--FE 251

Query: 365 DSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEG-PSPSLPS 423
            SI +   D +    +   ++             +  + +  + ++   ++         
Sbjct: 252 PSIMEGLCDVTID--EFRLTYTNDFSDDIVKFHCLANVSA--MSLAGVSIKYLEDVPKHF 307

Query: 424 NAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNN 483
               + + + +     +         L  L L+ N  S       L    L  L+L+ N 
Sbjct: 308 KWQSLSIIRCQLKQFPTLDLP----FLKSLTLTMNKGSISFKKVALP--SLSYLDLSRNA 361

Query: 484 FSGKIPNSCGYLQ--KMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIG 541
            S     S   L    +  L L  N     + +       L+ +  + +++         
Sbjct: 362 LSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAF 420

Query: 542 ESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSY 601
            SL  L+ LD+               L  +  L ++ N+   N                 
Sbjct: 421 LSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDN----------------- 463

Query: 602 NSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVP 661
                               ++F                     +  +DLS  +L     
Sbjct: 464 -----------------TLSNVF----------------ANTTNLTFLDLSKCQLEQISW 490

Query: 662 EEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVM 721
                L  L  LN+S NNL    +    QL SL  LD S N+              L+  
Sbjct: 491 GVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFF 550

Query: 722 DLSHNNLS 729
           +L++N+++
Sbjct: 551 NLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  194 bits (494), Expect = 6e-53
 Identities = 100/607 (16%), Positives = 175/607 (28%), Gaps = 93/607 (15%)

Query: 105 MSGNASLRGTLNPALLKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPI 164
           +S N  L+   + +      L+ LDLS               L  L  L L         
Sbjct: 39  LSFN-PLKILKSYSFSNFSELQWLDLSRCEIETI-EDKAWHGLHHLSNLILTGNPIQSFS 96

Query: 165 PPLLGNLSRLQYLSLGYNKLLRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPS 224
           P     L+ L+ L     KL    +   I QL +L+ L+++   +  S         + +
Sbjct: 97  PGSFSGLTSLENLVAVETKLASLES-FPIGQLITLKKLNVAHNFIH-SCKLPAYFSNLTN 154

Query: 225 LKTLYLEQCDLQLQPTIHRSFSHL-NSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPG 283
           L  + L    +Q           L  +     +L +S N +             I D   
Sbjct: 155 LVHVDLSYNYIQTIT--VNDLQFLRENPQVNLSLDMSLNPID-----------FIQDQAF 201

Query: 284 PMISLRTLTLSDNELDGEIPK-FFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPH 342
             I L  LTL  N     I K   QN+  L    L     +   +   F       +   
Sbjct: 202 QGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGL--- 258

Query: 343 FPKWLQTQKHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFIL 402
                          ++           F   ++ ++ ++ +   +   +   +   F  
Sbjct: 259 ------CDVTIDEFRLTYTNDFSDDIVKFHCLAN-VSAMSLAGVSIK--YLEDVPKHFKW 309

Query: 403 ESPGIDISSNHLEGPSPSLPSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSG 462
           +S  + I    L+            + L+ NK S     +      +L YLDLS N LS 
Sbjct: 310 QS--LSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVAL---PSLSYLDLSRNALSF 364

Query: 463 KLPDC--WLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELP-SLLKNF 519
                   L  N LR L+L+ N     +  +   L+++  L   H+        S   + 
Sbjct: 365 SGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSL 423

Query: 520 THLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIP-FQLCHLADIQILDLSL 578
             L  + +   +        I   L +L  L +  N F          +  ++  LDLS 
Sbjct: 424 EKLLYLDISYTNTK-IDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSK 482

Query: 579 NNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYE 638
             +       F+    +                                           
Sbjct: 483 CQLEQISWGVFDTLHRL------------------------------------------- 499

Query: 639 YKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLD 698
                   + +++S N L          L  L  L+ S N +           +SL F +
Sbjct: 500 --------QLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFN 551

Query: 699 LSRNQFS 705
           L+ N  +
Sbjct: 552 LTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  153 bits (388), Expect = 4e-39
 Identities = 82/510 (16%), Positives = 150/510 (29%), Gaps = 92/510 (18%)

Query: 249 NSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIPKFFQN 308
           +   S + + LS+N L                +      L+ L LS  E++    K +  
Sbjct: 29  DIPSSTKNIDLSFNPLK----------ILKSYSFSNFSELQWLDLSRCEIETIEDKAWHG 78

Query: 309 MFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAGISDSIP 368
           +  L  L L GN ++   S   FS  + L+                 L      ++    
Sbjct: 79  LHHLSNLILTGNPIQS-FSPGSFSGLTSLE----------------NLVAVETKLASLES 121

Query: 369 DWFSDTSHKLADLNFSHNQMTG-RFPNYISSMFILESPGIDISSNHLEGPSPS------- 420
                    L  LN +HN +   + P Y S++  L    +D+S N+++  + +       
Sbjct: 122 FPIGQ-LITLKKLNVAHNFIHSCKLPAYFSNLTNLVH--VDLSYNYIQTITVNDLQFLRE 178

Query: 421 LPSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLP-DCWLQFNMLRILNL 479
            P     +D+S N     I     F G  L  L L  N  S  +   C      L +  L
Sbjct: 179 NPQVNLSLDMSLNPIDF-IQDQA-FQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRL 236

Query: 480 ANNNFSGKIPNSCGYLQ--------KMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENS 531
               F  +                  +    L + N   +         ++  ++L   S
Sbjct: 237 ILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVS 296

Query: 532 ISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNN 591
           I                 L +   +        L  L   + L L++N  S         
Sbjct: 297 IKYLED---VPKHFKWQSLSIIRCQLKQFPTLDLPFL---KSLTLTMNKGSI-----SFK 345

Query: 592 FTAMTQER----SYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVK 647
             A+        S N+  ++F               + D+   +              ++
Sbjct: 346 KVALPSLSYLDLSRNA--LSF----------SGCCSYSDLGTNS--------------LR 379

Query: 648 SVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPK-IGQLQSLDFLDLSRNQFSG 706
            +DLS N     +    M L  L  L+   + L           L+ L +LD+S      
Sbjct: 380 HLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKI 438

Query: 707 GIPSSLSQVNRLSVMDLSHNNLSGKIPTGT 736
                   +  L+ + ++ N+      +  
Sbjct: 439 DFDGIFLGLTSLNTLKMAGNSFKDNTLSNV 468

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  112 bits (281), Expect = 1e-25
 Identities = 90/495 (18%), Positives = 145/495 (29%), Gaps = 119/495 (24%)

Query: 256 TLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIPKFFQNMFKLEGL 315
           T       L+            +PD      S + + LS N L       F N  +L+ L
Sbjct: 15  TYQCMDQKLS-----------KVPDDIPS--STKNIDLSFNPLKILKSYSFSNFSELQWL 61

Query: 316 SLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAGISDSIPDWFSDTS 375
            L    +E  I +  +    +L                  L ++   I    P  FS  +
Sbjct: 62  DLSRCEIET-IEDKAWHGLHHLS----------------NLILTGNPIQSFSPGSFSGLT 104

Query: 376 HKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSLPSNAFYIDLSKNKF 435
             L +L     ++       I  +  L+                        ++++ N  
Sbjct: 105 S-LENLVAVETKLASLESFPIGQLITLK-----------------------KLNVAHNFI 140

Query: 436 SGPISFLCSFSG-QNLVYLDLSSNLLSGKLPDCWLQF-----NMLRILNLANNNFSGKIP 489
                    FS   NLV++DLS N +   +    LQF      +   L+++ N     I 
Sbjct: 141 HS-CKLPAYFSNLTNLVHVDLSYNYIQT-ITVNDLQFLRENPQVNLSLDMSLNPID-FIQ 197

Query: 490 NSCGYLQKMLTLSLHHNNFSGELPS-LLKNFTHLRVVALEENSISGNIPAWIGESLLNLV 548
           +      K+  L+L  N  S  +    L+N   L V  L                  NL 
Sbjct: 198 DQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDER---------NLE 248

Query: 549 VLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQER-SYNSSAIT 607
           + +             LC +  I    L+  N   +    F+    ++    +  S    
Sbjct: 249 IFEPSIMEG-------LCDV-TIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVS---- 296

Query: 608 FSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDL 667
                      L                           +S+ +   +L         DL
Sbjct: 297 --------IKYLEDVPK------------------HFKWQSLSIIRCQLKQFPTL---DL 327

Query: 668 VGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVN--RLSVMDLSH 725
             L  L L+ N  +  I+ K   L SL +LDLSRN  S     S S +    L  +DLS 
Sbjct: 328 PFLKSLTLTMNKGS--ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSF 385

Query: 726 NNLSGKIPTGTQLQS 740
           N           L+ 
Sbjct: 386 NGAIIMSANFMGLEE 400

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  205 bits (524), Expect = 5e-57
 Identities = 98/628 (15%), Positives = 185/628 (29%), Gaps = 123/628 (19%)

Query: 125 LRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKL 184
              L+ SFN     Q   F   L  L +LDL              +  RL  L L  N L
Sbjct: 35  TECLEFSFNVLPTIQNTTF-SRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPL 93

Query: 185 LRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRS 244
           +       +S   +L++L      +S        +    +L++LYL      +       
Sbjct: 94  IFMAE-TALSGPKALKHLFFIQTGISSIDF--IPLHNQKTLESLYLGSN--HISSIKLPK 148

Query: 245 FSHLNSSPSLETLGLSYNNLTASIYPWLF----------------NVSSIPDAPGPMISL 288
                    L+ L    N +   +                     +++ I          
Sbjct: 149 GFPT---EKLKVLDFQNNAIH-YLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVF 204

Query: 289 RTLTLSDNELDGEIPK--FFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKW 346
           ++L     +    I K      +  L   +      E  IS   F     +         
Sbjct: 205 QSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDED-ISPAVFEGLCEM--------- 254

Query: 347 LQTQKHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPG 406
                    +++      +   + F   S  L +L+ +   ++   P+ +  +  L+   
Sbjct: 255 -----SVESINLQKHYFFNISSNTFHCFSG-LQELDLTATHLS-ELPSGLVGLSTLK--- 304

Query: 407 IDISSNHLEGPSPSLPSNAFYIDLSKNKFSGPISFLCSFSG-QNLVYLDLSSNLLSGKLP 465
                                + LS NKF        S S   +L +L +  N    +L 
Sbjct: 305 --------------------KLVLSANKFENLCQI--SASNFPSLTHLSIKGNTKRLELG 342

Query: 466 DCWLQ-FNMLRILNLANNN--FSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHL 522
              L+    LR L+L++++   S         L  + +L+L +N          K    L
Sbjct: 343 TGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQL 402

Query: 523 RVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNIS 582
            ++ L    +         ++L  L VL+L  +            L  +Q L+L  N+  
Sbjct: 403 ELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFP 462

Query: 583 GNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNT 642
               +  N+   + +                                             
Sbjct: 463 KGNIQKTNSLQTLGR--------------------------------------------- 477

Query: 643 LGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRN 702
              ++ + LS   L          L  +  ++LS N LT      +  L+ + +L+L+ N
Sbjct: 478 ---LEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASN 533

Query: 703 QFSGGIPSSLSQVNRLSVMDLSHNNLSG 730
             S  +PS L  +++   ++L  N L  
Sbjct: 534 HISIILPSLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  193 bits (492), Expect = 1e-52
 Identities = 99/613 (16%), Positives = 183/613 (29%), Gaps = 115/613 (18%)

Query: 126 RHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLL 185
           +  +      +  +IP  +   +  E L+                L  L +L L   ++ 
Sbjct: 15  KTYNCENLGLN--EIPGTL--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIY 70

Query: 186 RAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSF 245
                D       L  L L++  L    +                             + 
Sbjct: 71  WIHE-DTFQSQHRLDTLVLTANPLIFMAE----------------------------TAL 101

Query: 246 SHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIPKF 305
           S      +L+ L      ++          S          +L +L L  N +       
Sbjct: 102 SGP---KALKHLFFIQTGIS----------SIDFIPLHNQKTLESLYLGSNHISSIKLPK 148

Query: 306 FQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAGISD 365
                KL+ L  + N++   +S+   S+                      L+++   I+ 
Sbjct: 149 GFPTEKLKVLDFQNNAIHY-LSKEDMSSLQQAT--------------NLSLNLNGNDIAG 193

Query: 366 SIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSLPSNA 425
             P  F         LNF   Q        + +  I             E  SP++    
Sbjct: 194 IEPGAFDSAV--FQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEG- 250

Query: 426 FYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFS 485
                                  ++  ++L  +       + +  F+ L+ L+L   + S
Sbjct: 251 -------------------LCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS 291

Query: 486 GKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLL 545
            ++P+    L  +  L L  N F         NF  L  ++++ N+    +     E+L 
Sbjct: 292 -ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLE 350

Query: 546 NLVVLDLRSNRFY--GKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNS 603
           NL  LDL  +          QL +L+ +Q L+LS N       + F     +        
Sbjct: 351 NLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLEL------ 404

Query: 604 SAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEE 663
             +  ++   +R  +      F                 L L+K ++LS + L     + 
Sbjct: 405 --LDLAF---TRLKVKDAQSPF---------------QNLHLLKVLNLSHSLLDISSEQL 444

Query: 664 IMDLVGLIGLNLSRNNLTGYITPKIGQLQ---SLDFLDLSRNQFSGGIPSSLSQVNRLSV 720
              L  L  LNL  N+       K   LQ    L+ L LS    S     + + +  ++ 
Sbjct: 445 FDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNH 504

Query: 721 MDLSHNNLSGKIP 733
           +DLSHN L+    
Sbjct: 505 VDLSHNRLTSSSI 517

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  184 bits (470), Expect = 1e-49
 Identities = 93/510 (18%), Positives = 164/510 (32%), Gaps = 62/510 (12%)

Query: 89  LHGTGRVKVLDIQTRVMSGNASLRGTLNPALLKLHYLRHLDLSFNNFSGSQIPMFIGSLS 148
           L G   +K L            +       L     L  L L  N+ S  ++P       
Sbjct: 101 LSGPKALKHLF-----FIQT-GISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFP-TE 153

Query: 149 KLEYLDLFAASFSGPIPPLLGNLSRLQ--YLSLGYNKLLRAGNLDWISQLFSLRYLDLSS 206
           KL+ LD    +        + +L +     L+L  N +               + L+   
Sbjct: 154 KLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIE--PGAFDSAVFQSLNFGG 211

Query: 207 CNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTA 266
                      +   I SL     E  D+  +      F  L    S+E++ L  +    
Sbjct: 212 TQNLLVIFKGLKNSTIQSLWLGTFE--DMDDEDISPAVFEGL-CEMSVESINLQKHYFF- 267

Query: 267 SIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVI 326
                    +   +       L+ L L+   L  E+P     +  L+ L L  N  E  +
Sbjct: 268 ---------NISSNTFHCFSGLQELDLTATHL-SELPSGLVGLSTLKKLVLSANKFEN-L 316

Query: 327 SEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHN 386
            +   SNF  L                  L I        +     +    L +L+ SH+
Sbjct: 317 CQISASNFPSLT----------------HLSIKGNTKRLELGTGCLENLENLRELDLSHD 360

Query: 387 QMT--GRFPNYISSMFILESPGIDISSNHLEGPSPSLPSNAF-------YIDLSKNKFSG 437
            +         + ++  L+S  +++S N       SL + AF        +DL+  +   
Sbjct: 361 DIETSDCCNLQLRNLSHLQS--LNLSYNEPL----SLKTEAFKECPQLELLDLAFTRLKV 414

Query: 438 PISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKI---PNSCGY 494
             +     +   L  L+LS +LL       +     L+ LNL  N+F        NS   
Sbjct: 415 KDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQT 474

Query: 495 LQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRS 554
           L ++  L L   + S        +   +  V L  N ++ +    +  S L  + L+L S
Sbjct: 475 LGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEAL--SHLKGIYLNLAS 532

Query: 555 NRFYGKIPFQLCHLADIQILDLSLNNISGN 584
           N     +P  L  L+  + ++L  N +   
Sbjct: 533 NHISIILPSLLPILSQQRTINLRQNPLDCT 562

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  145 bits (369), Expect = 1e-36
 Identities = 75/493 (15%), Positives = 142/493 (28%), Gaps = 111/493 (22%)

Query: 251 SPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIPKFFQNMF 310
             S E L  S+N L  +I    F           +I+L  L L+  ++       FQ+  
Sbjct: 32  PNSTECLEFSFNVLP-TIQNTTF---------SRLINLTFLDLTRCQIYWIHEDTFQSQH 81

Query: 311 KLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAGISDSIPDW 370
           +L+ L L  N L  +      S    LK                 L     GIS      
Sbjct: 82  RLDTLVLTANPLIFMAETAL-SGPKALK----------------HLFFIQTGISSIDFIP 124

Query: 371 FSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSLPSNAFYIDL 430
             +    L  L    N ++            L+   +D  +N +      L         
Sbjct: 125 LHN-QKTLESLYLGSNHISSIKLPKGFPTEKLKV--LDFQNNAIH----YLSKEDM---- 173

Query: 431 SKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPN 490
                        S      + L+L+ N ++G +        + + LN         I  
Sbjct: 174 ------------SSLQQATNLSLNLNGNDIAG-IEPGAFDSAVFQSLNFGGTQNLLVIFK 220

Query: 491 SCGY--LQKMLTLSLHHNNFSGELPSLLKNFTHLRVVAL--EENSISGNIPAWIGESLLN 546
                 +Q +   +    +     P++ +    + V ++  +++                
Sbjct: 221 GLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFH-CFSG 279

Query: 547 LVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAI 606
           L  LDL +     ++P  L  L+ ++ L LS N          +NF ++           
Sbjct: 280 LQELDLTATHL-SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSL----------- 327

Query: 607 TFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIM- 665
                                                     + +  N    E+    + 
Sbjct: 328 ----------------------------------------THLSIKGNTKRLELGTGCLE 347

Query: 666 DLVGLIGLNLSRNNLT--GYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDL 723
           +L  L  L+LS +++        ++  L  L  L+LS N+       +  +  +L ++DL
Sbjct: 348 NLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDL 407

Query: 724 SHNNLSGKIPTGT 736
           +   L  K     
Sbjct: 408 AFTRLKVKDAQSP 420

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  143 bits (362), Expect = 8e-36
 Identities = 67/334 (20%), Positives = 121/334 (36%), Gaps = 9/334 (2%)

Query: 407 IDISSNHLEGPSPSLPSNAFYIDLSKNKFSGPISFLCSFSG-QNLVYLDLSSNLLSGKLP 465
            +  +  L     +LP++   ++ S N      +   +FS   NL +LDL+   +     
Sbjct: 17  YNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNT--TFSRLINLTFLDLTRCQIYWIHE 74

Query: 466 DCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVV 525
           D +   + L  L L  N        +    + +  L       S      L N   L  +
Sbjct: 75  DTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESL 134

Query: 526 ALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQI--LDLSLNNISG 583
            L  N IS +I    G     L VLD ++N  +      +  L       L+L+ N+I+G
Sbjct: 135 YLGSNHIS-SIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG 193

Query: 584 NIPKCFNNFTAMTQERSYNS-SAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNT 642
             P  F++    +          + F     S    L +  F D+       + +E    
Sbjct: 194 IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCE 253

Query: 643 LGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRN 702
           + + +S++L  +              GL  L+L+  +L+  +   +  L +L  L LS N
Sbjct: 254 MSV-ESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSAN 311

Query: 703 QFSGGIPSSLSQVNRLSVMDLSHNNLSGKIPTGT 736
           +F      S S    L+ + +  N    ++ TG 
Sbjct: 312 KFENLCQISASNFPSLTHLSIKGNTKRLELGTGC 345

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  101 bits (254), Expect = 2e-22
 Identities = 57/262 (21%), Positives = 98/262 (37%), Gaps = 27/262 (10%)

Query: 89  LHGTGRVKVLDIQTRVMSGNASLRGTLNP-ALLKLHYLRHLDLSFNNFSGSQI-PMFIGS 146
                 +  L      + GN + R  L    L  L  LR LDLS ++   S    + + +
Sbjct: 321 ASNFPSLTHLS-----IKGN-TKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRN 374

Query: 147 LSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAGNLDWISQLFSLRYLDLSS 206
           LS L+ L+L                 +L+ L L + +L           L  L+ L+LS 
Sbjct: 375 LSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSH 434

Query: 207 CNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTA 266
             L  S++ L   D +P+L+ L L+           +  + L +   LE L LS+ +L+ 
Sbjct: 435 SLLDISSEQL--FDGLPALQHLNLQGN--HFPKGNIQKTNSLQTLGRLEILVLSFCDLS- 489

Query: 267 SIYPWLF--------------NVSSIPDAPGPMISLRTLTLSDNELDGEIPKFFQNMFKL 312
           SI    F               ++S        +    L L+ N +   +P     + + 
Sbjct: 490 SIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISIILPSLLPILSQQ 549

Query: 313 EGLSLRGNSLEGVISEHFFSNF 334
             ++LR N L+   S  +F  +
Sbjct: 550 RTINLRQNPLDCTCSNIYFLEW 571

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 78.5 bits (194), Expect = 4e-15
 Identities = 36/263 (13%), Positives = 70/263 (26%), Gaps = 57/263 (21%)

Query: 489 PNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLV 548
              C   +   T +  +   + E+P  L        +    N +   I       L+NL 
Sbjct: 5   DQKCIEKEVNKTYNCENLGLN-EIPGTL--PNSTECLEFSFNVLP-TIQNTTFSRLINLT 60

Query: 549 VLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITF 608
            LDL   + Y            +  L L+ N +        +   A+             
Sbjct: 61  FLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKAL------------- 107

Query: 609 SYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLV 668
                                                 K +      +       + +  
Sbjct: 108 --------------------------------------KHLFFIQTGISSIDFIPLHNQK 129

Query: 669 GLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVM--DLSHN 726
            L  L L  N+++    PK    + L  LD   N         +S + + + +  +L+ N
Sbjct: 130 TLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGN 189

Query: 727 NLSGKIPTGTQLQSFNASVYDGN 749
           +++G  P       F +  + G 
Sbjct: 190 DIAGIEPGAFDSAVFQSLNFGGT 212

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  174 bits (443), Expect = 2e-45
 Identities = 136/729 (18%), Positives = 226/729 (31%), Gaps = 104/729 (14%)

Query: 123 HYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYN 182
              R     F N +  Q+P     L+  E L L               L +LQ L LG  
Sbjct: 4   FDGRIAFYRFCNLT--QVP---QVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQ 58

Query: 183 KLLRAGNLDWISQLFSLRYLDLSSCNLSK-STDWLQEVDKIPSLKTLYLEQCDLQLQPTI 241
                 + +    L +LR LDL S  +     D  Q    +  L  L L  C L      
Sbjct: 59  YTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQ---GLFHLFELRLYFCGLSDAVLK 115

Query: 242 HRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGE 301
              F +L    +L  L LS N + +      F         G + SL+++  S N++   
Sbjct: 116 DGYFRNL---KALTRLDLSKNQIRSLYLHPSF---------GKLNSLKSIDFSSNQIFLV 163

Query: 302 IPKFFQN--MFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDIS 359
                +      L   SL  NSL   +S  +    +  +                +LD+S
Sbjct: 164 CEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFR-----------NMVLEILDVS 212

Query: 360 SAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSP 419
             G +  I   FS+   K    +                       G     ++++    
Sbjct: 213 GNGWTVDITGNFSNAISKSQAFSLILAHHI---------------MGAGFGFHNIK---- 253

Query: 420 SLPSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNL 479
                    D  +N F+G    L      ++ +LDLS   +       +     L++LNL
Sbjct: 254 ---------DPDQNTFAG----LAR---SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNL 297

Query: 480 ANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAW 539
           A N  +     +   L  +  L+L +N       S       +  + L++N I+  I   
Sbjct: 298 AYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA-IIQDQ 356

Query: 540 IGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQER 599
             + L  L  LDLR N         +  +  I  + LS N +   +PK   N TA     
Sbjct: 357 TFKFLEKLQTLDLRDNAL-----TTIHFIPSIPDIFLSGNKLV-TLPK--INLTANLIHL 408

Query: 600 SYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGE 659
           S N            R   L   +  +    +    +        L + + L  N L   
Sbjct: 409 SENRLENLDILYFLLRVPHL-QILILNQNRFSSCSGDQTPSENPSL-EQLFLGENMLQLA 466

Query: 660 VPEEI-----MDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQ 714
              E+       L  L  L L+ N L          L +L  L L+ N+ +    + L  
Sbjct: 467 WETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP- 525

Query: 715 VNRLSVMDLSHNNLSGKIP-----------------TGTQLQSFNASVYDGNPELCGLPL 757
              L ++D+S N L    P                    +L +F   +   N  + G P 
Sbjct: 526 -ANLEILDISRNQLLAPNPDVFVSLSVLDITHNKFICECELSTFINWLNHTNVTIAGPPA 584

Query: 758 PSKCWDEESAPGPAITKGRDDADTSEDEDQFITLGFFVTLILGFIVGFWGVCGTLLLNNS 817
              C   +S  G ++     +    E+  + +    F+   +   +    +         
Sbjct: 585 DIYCVYPDSFSGVSLFSLSTEGCDEEEVLKSLKFSLFIVCTVTLTLFLMTILTVTKFRGF 644

Query: 818 WKHCFYNFL 826
              C+    
Sbjct: 645 CFICYKTAQ 653

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  152 bits (385), Expect = 4e-38
 Identities = 99/531 (18%), Positives = 171/531 (32%), Gaps = 70/531 (13%)

Query: 78  SNQTGHVKVLDLHGTGRVKVLDIQTRVMSGNASLRGTLNPALLK-LHYLRHLDLSFNNFS 136
           S++   +      G   +  L      +         L     + L  L  LDLS N   
Sbjct: 82  SSKIYFLHPDAFQGLFHLFELR-----LYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIR 136

Query: 137 GSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLS--RLQYLSLGYNKLLRAGNLDWIS 194
              +    G L+ L+ +D  +          L  L    L + SL  N L    ++DW  
Sbjct: 137 SLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGK 196

Query: 195 QLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSL 254
            +   R + L   ++S +                 ++                L  +  +
Sbjct: 197 CMNPFRNMVLEILDVSGN--------------GWTVDITGNFSNAISKSQAFSLILAHHI 242

Query: 255 ETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIPKFFQNMFKLEG 314
              G  ++N+        F       A     S+R L LS   +     + F+ +  L+ 
Sbjct: 243 MGAGFGFHNIK-DPDQNTF-------AGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKV 294

Query: 315 LSLRGNSLEGVISEHFFS-------NFSYLKMGPHFPKWLQTQKHFSVLDISSAGISDSI 367
           L+L  N +  +  E F+        N SY  +G  +          + +D+    I+   
Sbjct: 295 LNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQ 354

Query: 368 PDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILES-PGIDISSNHLEGPSPSLPSNAF 426
              F      L  L+   N +T        ++  + S P I +S N L     +LP    
Sbjct: 355 DQTFKFLEK-LQTLDLRDNALT--------TIHFIPSIPDIFLSGNKLV----TLPKINL 401

Query: 427 ---YIDLSKNKFSG--PISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFN-MLRILNLA 480
               I LS+N+      + FL      +L  L L+ N  S    D     N  L  L L 
Sbjct: 402 TANLIHLSENRLENLDILYFLLRVP--HLQILILNQNRFSSCSGDQTPSENPSLEQLFLG 459

Query: 481 NNNFSGKIPNSC-----GYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGN 535
            N                 L  +  L L+HN  +   P +  + T LR ++L  N ++  
Sbjct: 460 ENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT-V 518

Query: 536 IPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIP 586
           +      +  NL +LD+  N+              + +LD++ N       
Sbjct: 519 LSHNDLPA--NLEILDISRNQLLA---PNPDVFVSLSVLDITHNKFICECE 564

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  159 bits (404), Expect = 2e-41
 Identities = 105/588 (17%), Positives = 190/588 (32%), Gaps = 93/588 (15%)

Query: 125 LRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKL 184
            ++LDLSFN         F  S  +L+ LDL              +LS L  L L  N +
Sbjct: 30  TKNLDLSFNPLRHLGSYSF-FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88

Query: 185 LRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRS 244
                L   S L SL+ L     NL+   +    +  + +LK L +    +Q    +   
Sbjct: 89  QSL-ALGAFSGLSSLQKLVAVETNLASLEN--FPIGHLKTLKELNVAHNLIQSFK-LPEY 144

Query: 245 FSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIPK 304
           FS+L    +LE L LS N + +     L  +  +P      +   +L LS N ++   P 
Sbjct: 145 FSNL---TNLEHLDLSSNKIQSIYCTDLRVLHQMP------LLNLSLDLSLNPMNFIQPG 195

Query: 305 FFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAGIS 364
            F+ + +L  L+LR N     + +      + L+                 L +      
Sbjct: 196 AFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLE--------------VHRLVLGEFRNE 240

Query: 365 DSIPDWFSDTSHKLADLNFSHNQMTG--RFPNYISSMF--ILESPGIDISSNHLEGPSPS 420
            ++  +       L +L     ++     + + I  +F  +       + S  +E     
Sbjct: 241 GNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE----R 296

Query: 421 LPSNAFYIDLSKNKFSG-PISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNL 479
           +   ++       +          +   ++L  L  +SN       +  L    L  L+L
Sbjct: 297 VKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLP--SLEFLDL 354

Query: 480 ANN--NFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIP 537
           + N  +F G    S      +  L L  N     + S       L  +  + +++     
Sbjct: 355 SRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSE 413

Query: 538 AWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQ 597
             +  SL NL+ LD+               L+ +++L ++ N+   N     + FT +  
Sbjct: 414 FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP--DIFTELRN 471

Query: 598 ERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLG 657
                                                           +  +DLS  +L 
Sbjct: 472 ------------------------------------------------LTFLDLSQCQLE 483

Query: 658 GEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFS 705
              P     L  L  LN++ N L         +L SL  + L  N + 
Sbjct: 484 QLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  146 bits (370), Expect = 5e-37
 Identities = 95/497 (19%), Positives = 162/497 (32%), Gaps = 70/497 (14%)

Query: 118 ALLKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYL 177
           A   L +L  L L+ N      +  F G LS L+ L     + +      +G+L  L+ L
Sbjct: 71  AYQSLSHLSTLILTGNPIQSLALGAFSG-LSSLQKLVAVETNLASLENFPIGHLKTLKEL 129

Query: 178 SLGYNKLLRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQL 237
           ++ +N +      ++ S L +L +LDLSS  +                           +
Sbjct: 130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS-------------------------I 164

Query: 238 QPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNE 297
             T  R    +       +L LS N +             I       I L  LTL +N 
Sbjct: 165 YCTDLRVLHQM--PLLNLSLDLSLNPMN-----------FIQPGAFKEIRLHKLTLRNNF 211

Query: 298 LDGEIPK-FFQNMFKLEGLSLRGNSLEG-----VISEHFFSNFSYLKM-----------G 340
               + K   Q +  LE   L               +        L +            
Sbjct: 212 DSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYL 271

Query: 341 PHFPKWLQTQKHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMF 400
                      + S   + S  I   + D+  +       L   + +          ++ 
Sbjct: 272 DDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNFG--WQHLELVNCKF-----GQFPTLK 323

Query: 401 ILESPGIDISSNHLEGPSP--SLPSNAFYIDLSKNKFSGPISFLCSFSG-QNLVYLDLSS 457
           +     +  +SN          LPS   ++DLS+N  S       S  G  +L YLDLS 
Sbjct: 324 LKSLKRLTFTSNKGGNAFSEVDLPSLE-FLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSF 382

Query: 458 NLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSC-GYLQKMLTLSLHHNNFSGELPSLL 516
           N +   +   +L    L  L+  ++N       S    L+ ++ L + H +       + 
Sbjct: 383 NGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 441

Query: 517 KNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDL 576
              + L V+ +  NS   N    I   L NL  LDL   +     P     L+ +Q+L++
Sbjct: 442 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 501

Query: 577 SLNNISGNIPKCFNNFT 593
           + N +       F+  T
Sbjct: 502 ASNQLKSVPDGIFDRLT 518

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  139 bits (353), Expect = 7e-35
 Identities = 113/594 (19%), Positives = 194/594 (32%), Gaps = 105/594 (17%)

Query: 174 LQYLSLGYNKL--LRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLE 231
            + L L +N L  L + +         L+ LDLS C +    D       +  L TL L 
Sbjct: 30  TKNLDLSFNPLRHLGSYSF---FSFPELQVLDLSRCEIQTIED--GAYQSLSHLSTLILT 84

Query: 232 QCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTL 291
              +Q       +FS L    SL+ L     NL           S      G + +L+ L
Sbjct: 85  GNPIQSLAL--GAFSGL---SSLQKLVAVETNLA----------SLENFPIGHLKTLKEL 129

Query: 292 TLSDNEL-DGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQ 350
            ++ N +   ++P++F N+  LE L L  N ++ +                      Q  
Sbjct: 130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH-------------QMP 176

Query: 351 KHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGR-FPNYISSMFILESPGIDI 409
                LD+S   ++   P  F +    L  L   +N  +       I  +  LE   + +
Sbjct: 177 LLNLSLDLSLNPMNFIQPGAFKEIR--LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVL 234

Query: 410 SSNHLEGPSPSLPSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSS-NLLSGKLPDCW 468
                EG       +A                LC+     +    L+  +     + D +
Sbjct: 235 GEFRNEGNLEKFDKSAL-------------EGLCNL---TIEEFRLAYLDYYLDDIIDLF 278

Query: 469 LQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALE 528
                +   +L +         S  +  + L L    N   G+ P+L      L+ +   
Sbjct: 279 NCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELV---NCKFGQFPTL--KLKSLKRLTFT 333

Query: 529 ENSISGNIPAWIGESLLNLVVLDLRSNR--FYGKIPFQLCHLADIQILDLSLNNISGNIP 586
            N    N  +     L +L  LDL  N   F G           ++ LDLS N +   + 
Sbjct: 334 SNKGG-NAFS--EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMS 389

Query: 587 KCFNNFTAMTQ-ERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGL 645
             F     +   +  ++                +     F                +L  
Sbjct: 390 SNFLGLEQLEHLDFQHS------------NLKQMSEFSVFL---------------SLRN 422

Query: 646 VKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKI-GQLQSLDFLDLSRNQF 704
           +  +D+S              L  L  L ++ N+      P I  +L++L FLDLS+ Q 
Sbjct: 423 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 482

Query: 705 SGGIPSSLSQVNRLSVMDLSHNNLSGKIPTG-----TQLQSFNASVYDGNPELC 753
               P++ + ++ L V++++ N L   +P G     T LQ         NP  C
Sbjct: 483 EQLSPTAFNSLSSLQVLNMASNQLK-SVPDGIFDRLTSLQKIWLH---TNPWDC 532

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  123 bits (311), Expect = 1e-29
 Identities = 85/509 (16%), Positives = 161/509 (31%), Gaps = 93/509 (18%)

Query: 251 SPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIPKFFQNMF 310
             S + L LS+N L   +  + F              L+ L LS  E+       +Q++ 
Sbjct: 27  PFSTKNLDLSFNPLR-HLGSYSF---------FSFPELQVLDLSRCEIQTIEDGAYQSLS 76

Query: 311 KLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAGISDSIPDW 370
            L  L L GN ++  ++   FS  S L+                 L      ++      
Sbjct: 77  HLSTLILTGNPIQS-LALGAFSGLSSLQ----------------KLVAVETNLASLENFP 119

Query: 371 FSDTSHKLADLNFSHNQMT-GRFPNYISSMFILESPGIDISSNHLEGPSP-------SLP 422
                  L +LN +HN +   + P Y S++  LE   +D+SSN ++            +P
Sbjct: 120 IGH-LKTLKELNVAHNLIQSFKLPEYFSNLTNLEH--LDLSSNKIQSIYCTDLRVLHQMP 176

Query: 423 SNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPD-CWLQFNMLRILNLA- 480
                +DLS N  +       +F    L  L L +N  S  +   C      L +  L  
Sbjct: 177 LLNLSLDLSLNPMNFIQPG--AFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVL 234

Query: 481 -----NNNFSGKIPNSCGYLQKMLTLSLHHN---NFSGELPSLLKNFTHLRVVALEENSI 532
                  N      ++   L  +            +  ++  L    T++   +L   +I
Sbjct: 235 GEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI 294

Query: 533 SGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNF 592
                        +L +++ +  +F          L  ++ L  + N           + 
Sbjct: 295 ERVKDFSYNFGWQHLELVNCKFGQF------PTLKLKSLKRLTFTSNKGGN-----AFSE 343

Query: 593 TAMTQER----SYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKS 648
             +        S N                           L++KG   +       +K 
Sbjct: 344 VDLPSLEFLDLSRNG--------------------------LSFKGCCSQSDFGTTSLKY 377

Query: 649 VDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKI-GQLQSLDFLDLSRNQFSGG 707
           +DLS N +   +    + L  L  L+   +NL       +   L++L +LD+S       
Sbjct: 378 LDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA 436

Query: 708 IPSSLSQVNRLSVMDLSHNNLSGKIPTGT 736
                + ++ L V+ ++ N+         
Sbjct: 437 FNGIFNGLSSLEVLKMAGNSFQENFLPDI 465

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  119 bits (299), Expect = 5e-28
 Identities = 76/435 (17%), Positives = 144/435 (33%), Gaps = 51/435 (11%)

Query: 118 ALLKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQY- 176
            +  L  L+ L+++ N     ++P +  +L+ LE+LDL +          L  L ++   
Sbjct: 119 PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL 178

Query: 177 ---LSLGYNKLLRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQC 233
              L L  N +          +   L  L L +   S +      +  +  L+   L   
Sbjct: 179 NLSLDLSLNPMNFIQ--PGAFKEIRLHKLTLRNNFDSLNVMK-TCIQGLAGLEVHRLVLG 235

Query: 234 DLQLQPTIHR-SFSHLNSSPSL--ETLGLSYNNLTASIYPWLFNV--------------S 276
           + + +  + +   S L    +L  E   L+Y +        LFN                
Sbjct: 236 EFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE 295

Query: 277 SIPDAPGPMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSY 336
            + D        + L L + +         ++   L+ L+   N      SE    +  +
Sbjct: 296 RVKDFSY-NFGWQHLELVNCKFGQFPTLKLKS---LKRLTFTSNKGGNAFSEVDLPSLEF 351

Query: 337 LKMG-------PHFPKWLQTQKHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMT 389
           L +            +          LD+S  G+  ++   F     +L  L+F H+ + 
Sbjct: 352 LDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFL-GLEQLEHLDFQHSNLK 409

Query: 390 GRFPNYI-SSMFILESPGIDISSNHLEGPSPSLPSNAF-------YIDLSKNKFSGPISF 441
                 +  S+  L    +DIS  H         +  F        + ++ N F      
Sbjct: 410 QMSEFSVFLSLRNLIY--LDISHTHTR----VAFNGIFNGLSSLEVLKMAGNSFQENFLP 463

Query: 442 LCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTL 501
                 +NL +LDLS   L    P  +   + L++LN+A+N            L  +  +
Sbjct: 464 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKI 523

Query: 502 SLHHNNFSGELPSLL 516
            LH N +    P + 
Sbjct: 524 WLHTNPWDCSCPRID 538

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 92.9 bits (231), Expect = 1e-19
 Identities = 61/345 (17%), Positives = 103/345 (29%), Gaps = 21/345 (6%)

Query: 408 DISSNHLEGPSPSLPSNAFYIDLSKNKFSGPISFLCSFSG-QNLVYLDLSSNLLSGKLPD 466
                +      +LP +   +DLS N      S   SF     L  LDLS   +      
Sbjct: 13  QCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGS--YSFFSFPELQVLDLSRCEIQTIEDG 70

Query: 467 CWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVA 526
            +   + L  L L  N        +   L  +  L     N +      + +   L+ + 
Sbjct: 71  AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN 130

Query: 527 LEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQI----LDLSLNNIS 582
           +  N I          +L NL  LDL SN+        L  L  + +    LDLSLN ++
Sbjct: 131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN 190

Query: 583 GNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNT 642
              P  F            N  ++            L VH             E   K+ 
Sbjct: 191 FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA 250

Query: 643 LGLVKSVDLSSNKL------GGEVPEEIMDLVGLIGLNLSRNNLTG-YITPKIGQLQSLD 695
           L  + ++ +   +L        ++ +    L  +   +L    +            Q L+
Sbjct: 251 LEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLE 310

Query: 696 FLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGKIPTGTQLQS 740
            ++    QF      SL ++        + N       +   L S
Sbjct: 311 LVNCKFGQFPTLKLKSLKRL------TFTSNKGG-NAFSEVDLPS 348

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  148 bits (376), Expect = 6e-38
 Identities = 87/508 (17%), Positives = 171/508 (33%), Gaps = 71/508 (13%)

Query: 125 LRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKL 184
           ++ LDLSFN  +         + + L+ L L ++  +        +L  L++L L  N  
Sbjct: 28  MKSLDLSFNKITYIGHGDL-RACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH- 85

Query: 185 LRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRS 244
           L + +  W   L SL+YL+L                 + +L+TL +              
Sbjct: 86  LSSLSSSWFGPLSSLKYLNLMGNPYQTLGV-TSLFPNLTNLQTLRIGNV-ETFSEIRRID 143

Query: 245 FSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIPK 304
           F+ L    SL  L +   +L           +    +   +  +  LTL  +E    +  
Sbjct: 144 FAGL---TSLNELEIKALSLR----------NYQSQSLKSIRDIHHLTLHLSESAFLLEI 190

Query: 305 FFQNMFKLEGLSLRGNSLEGVISEHF------------------FSNFSYLKMGPHFPKW 346
           F   +  +  L LR  +L                           ++ S+ ++       
Sbjct: 191 FADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYI 250

Query: 347 LQTQKHFSVLDISSAGISDSIPDWFSDTSH-------KLADLNFSHNQMTGRFPNYISSM 399
           L+        D +  G+ D  P      S         +  L+     +        S +
Sbjct: 251 LELS-EVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLL 309

Query: 400 FILESPGIDISSNHLEGPSPSLPSNAF-------YIDLSKNKFSGPISFLCSFSGQ--NL 450
             ++   I + ++ +      +P +         ++DLS+N          +  G   +L
Sbjct: 310 EKVKR--ITVENSKVF----LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSL 363

Query: 451 VYLDLSSNLLS--GKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNF 508
             L LS N L    K  +  L    L  L+++ N F   +P+SC + +KM  L+L     
Sbjct: 364 QTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGI 422

Query: 509 SGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHL 568
              + + +     L V+ +  N++           L  L  L +  N+    +P      
Sbjct: 423 R-VVKTCI--PQTLEVLDVSNNNLDS-----FSLFLPRLQELYISRNKLK-TLP-DASLF 472

Query: 569 ADIQILDLSLNNISGNIPKCFNNFTAMT 596
             + ++ +S N +       F+  T++ 
Sbjct: 473 PVLLVMKISRNQLKSVPDGIFDRLTSLQ 500

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  146 bits (370), Expect = 3e-37
 Identities = 98/608 (16%), Positives = 189/608 (31%), Gaps = 115/608 (18%)

Query: 128 LDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRA 187
            D    +F+   IP   G  + ++ LDL     +      L   + LQ L L  +++   
Sbjct: 10  CDGRSRSFT--SIP--SGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTI 65

Query: 188 GNLDWISQLFSLRYLDLSSCNLSK-STDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFS 246
              D    L SL +LDLS  +LS  S+ W      + SLK L L     Q    +   F 
Sbjct: 66  EG-DAFYSLGSLEHLDLSDNHLSSLSSSWFG---PLSSLKYLNLMGNPYQTLG-VTSLFP 120

Query: 247 HLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIPKFF 306
           +L    +L+TL +      + I    F           + SL  L +    L     +  
Sbjct: 121 NL---TNLQTLRIGNVETFSEIRRIDFA---------GLTSLNELEIKALSLRNYQSQSL 168

Query: 307 QNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAGISDS 366
           +++  +  L+L  +     + E F    S ++                 L++    ++  
Sbjct: 169 KSIRDIHHLTLHLSESA-FLLEIFADILSSVR----------------YLELRDTNLA-R 210

Query: 367 IPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSLPSNAF 426
                       + +     + +       + +  L    +++S    +        N  
Sbjct: 211 FQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDD----CTLNGL 266

Query: 427 -YIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFS 485
              + S++     +  + +     +  L +    L   L   +     ++ + + N+   
Sbjct: 267 GDFNPSESDVVSELGKVETV---TIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF 323

Query: 486 GKIPNSCGYLQKMLTLSLHHNNFSGEL---PSLLKNFTHLRVVALEENSISGNIPAWIG- 541
               +   +L+ +  L L  N    E     +    +  L+ + L +N +  ++      
Sbjct: 324 LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR-SMQKTGEI 382

Query: 542 -ESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERS 600
             +L NL  LD+  N F   +P        ++ L+LS   I                   
Sbjct: 383 LLTLKNLTSLDISRNTF-HPMPDSCQWPEKMRFLNLSSTGI------------------- 422

Query: 601 YNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEV 660
                            ++   I   + +L                   D+S+N L    
Sbjct: 423 ----------------RVVKTCIPQTLEVL-------------------DVSNNNLD-SF 446

Query: 661 PEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSV 720
               + L  L  L +SRN L     P       L  + +SRNQ          ++  L  
Sbjct: 447 S---LFLPRLQELYISRNKLK--TLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQK 501

Query: 721 MDLSHNNL 728
           + L  N  
Sbjct: 502 IWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  123 bits (310), Expect = 2e-29
 Identities = 87/567 (15%), Positives = 163/567 (28%), Gaps = 122/567 (21%)

Query: 198 SLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETL 257
           +    D  S + +     L       ++K+L L    +      H          +L+ L
Sbjct: 6   ASGVCDGRSRSFTSIPSGLT-----AAMKSLDLSFNKITYIG--HGDLRAC---ANLQVL 55

Query: 258 GLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSL 317
            L  + +  +I    F           + SL  L LSDN L      +F  +  L+ L+L
Sbjct: 56  ILKSSRIN-TIEGDAF---------YSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105

Query: 318 RGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAGISDSIPDWFSDTSHK 377
            GN  + +     F N + L+                 L I +      I          
Sbjct: 106 MGNPYQTLGVTSLFPNLTNLQ----------------TLRIGNVETFSEIRRIDFAGLTS 149

Query: 378 LADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSLPS-------------N 424
           L +L      +       + S+  +    + +  +                        N
Sbjct: 150 LNELEIKALSLRNYQSQSLKSIRDIHH--LTLHLSESAFLLEIFADILSSVRYLELRDTN 207

Query: 425 AFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNF 484
                 S        S +   + +  V  D S N L  KL    L+ + +   +   N  
Sbjct: 208 LARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELL-KLLRYILELSEVEFDDCTLNGL 266

Query: 485 SGKIPNSCGYLQKM--------LTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNI 536
               P+    + ++          L +       +L ++      ++ + +E + +   +
Sbjct: 267 GDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LV 325

Query: 537 PAWIGESLLNLVVLDLRSNRFYGKIPFQ---LCHLADIQILDLSLNNISGNIPKCFNNFT 593
           P    + L +L  LDL  N    +             +Q L LS N++  ++ K      
Sbjct: 326 PCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR-SMQKTGEILL 384

Query: 594 AMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSS 653
            +                                  LT                 +D+S 
Sbjct: 385 TLKN--------------------------------LTS----------------LDISR 396

Query: 654 NKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLS 713
           N     +P+       +  LNLS   +   +   I   Q+L+ LD+S N         L 
Sbjct: 397 NTF-HPMPDSCQWPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLD-SFSLFLP 451

Query: 714 QVNRLSVMDLSHNNLSGKIPTGTQLQS 740
           ++  L    +S N L   +P  +    
Sbjct: 452 RLQEL---YISRNKLK-TLPDASLFPV 474

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  123 bits (310), Expect = 2e-29
 Identities = 75/486 (15%), Positives = 158/486 (32%), Gaps = 63/486 (12%)

Query: 78  SNQTGHVKVLDLHGTGRVKVLDIQTRVMSGNASLRGTLNPALLKLHYLRHLDLSFNNFSG 137
            N    +          +K L++      GN      +      L  L+ L +       
Sbjct: 83  DNHLSSLSSSWFGPLSSLKYLNL-----MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFS 137

Query: 138 SQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKL--LRAGNLDWISQ 195
               +    L+ L  L++ A S        L ++  + +L+L  ++   L     D +S 
Sbjct: 138 EIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSS 197

Query: 196 LFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLE 255
           +  L   D +      S   + EV                +    + +   ++     +E
Sbjct: 198 VRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVE 257

Query: 256 TLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIPKFFQNMFKLEGL 315
               + N L          VS +       +++R L +    L  ++   +  + K++ +
Sbjct: 258 FDDCTLNGLGDFNPSESDVVSELGKV--ETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRI 315

Query: 316 SLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAGISDSIPDW--FSD 373
           ++  + +  ++   F  +   L+                 LD+S   + +          
Sbjct: 316 TVENSKVF-LVPCSFSQHLKSLE----------------FLDLSENLMVEEYLKNSACKG 358

Query: 374 TSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSLPSNAFYIDLSKN 433
               L  L  S N +            + ++  I ++  +L             +D+S+N
Sbjct: 359 AWPSLQTLVLSQNHLR----------SMQKTGEILLTLKNLT-----------SLDISRN 397

Query: 434 KFSGPISFLCSFSG-QNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSC 492
            F        S    + + +L+LSS  +   +  C      L +L+++NNN         
Sbjct: 398 TFH---PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLD-SFSLFL 450

Query: 493 GYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDL 552
             LQ    L +  N     LP     F  L V+ +  N +  ++P  I + L +L  + L
Sbjct: 451 PRLQ---ELYISRNKLK-TLPDAS-LFPVLLVMKISRNQLK-SVPDGIFDRLTSLQKIWL 504

Query: 553 RSNRFY 558
            +N + 
Sbjct: 505 HTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 99.0 bits (247), Expect = 1e-21
 Identities = 72/495 (14%), Positives = 145/495 (29%), Gaps = 112/495 (22%)

Query: 250 SSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIPKFFQNM 309
           S  +         + T           SIP   G   ++++L LS N++        +  
Sbjct: 3   SCDASGVCDGRSRSFT-----------SIP--SGLTAAMKSLDLSFNKITYIGHGDLRAC 49

Query: 310 FKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAGISDSIPD 369
             L+ L L+ + +   I    F +   L+                 LD+S   +S     
Sbjct: 50  ANLQVLILKSSRIN-TIEGDAFYSLGSLE----------------HLDLSDNHLSSLSSS 92

Query: 370 WFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSLPSNAFYID 429
           WF   S  L  LN   N                                 +L   + + +
Sbjct: 93  WFGPLS-SLKYLNLMGNPYQ------------------------------TLGVTSLFPN 121

Query: 430 LSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQ-FNMLRILNLANNNFSGKI 488
           L+                 NL  L + +     ++          L  L +   +     
Sbjct: 122 LT-----------------NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQ 164

Query: 489 PNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWI--GESLLN 546
             S   ++ +  L+LH +  +  L       + +R + L + +++    + +   E    
Sbjct: 165 SQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSP 224

Query: 547 LVVLDLRSNRFYG-------KIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQER 599
           +  L  R +           K+   +  L++++  D +LN +    P   +  + + +  
Sbjct: 225 MKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVE 284

Query: 600 SYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGE 659
           +     +                ++                  L  VK + + ++K+   
Sbjct: 285 TVTIRRLHIPQ---FYLFYDLSTVYSL----------------LEKVKRITVENSKVFLV 325

Query: 660 VPEEIMDLVGLIGLNLSRNNLTGYITPK---IGQLQSLDFLDLSRNQFS--GGIPSSLSQ 714
                  L  L  L+LS N +           G   SL  L LS+N           L  
Sbjct: 326 PCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLT 385

Query: 715 VNRLSVMDLSHNNLS 729
           +  L+ +D+S N   
Sbjct: 386 LKNLTSLDISRNTFH 400

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  132 bits (334), Expect = 7e-33
 Identities = 84/509 (16%), Positives = 164/509 (32%), Gaps = 77/509 (15%)

Query: 117 PALLKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQY 176
                L       L   N + +        L ++  L              +  L+ L  
Sbjct: 18  FTDTALAEKMKTVLGKTNVTDTV---SQTDLDQVTTLQADRLGIKSIDG--VEYLNNLTQ 72

Query: 177 LSLGYNKLLRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQ 236
           ++   N+L    ++  +  L  L  + +++  ++     +  +  + +L  L L    + 
Sbjct: 73  INFSNNQL---TDITPLKNLTKLVDILMNNNQIAD----ITPLANLTNLTGLTLFNNQI- 124

Query: 237 LQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYP----------WLFNVSSIPDAPGPMI 286
                      L +  +L  L LS N ++  I               N  +       + 
Sbjct: 125 ------TDIDPLKNLTNLNRLELSSNTIS-DISALSGLTSLQQLSFGNQVTDLKPLANLT 177

Query: 287 SLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKW 346
           +L  L +S N++          +  LE L    N +  +         + L         
Sbjct: 178 TLERLDISSNKV--SDISVLAKLTNLESLIATNNQISDITP---LGILTNLDE------- 225

Query: 347 LQTQKHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPG 406
                    L ++   + D      +  +  L DL+ ++NQ++      +S +  L    
Sbjct: 226 ---------LSLNGNQLKDIGT--LASLT-NLTDLDLANNQISN-LAP-LSGLTKLTE-- 269

Query: 407 IDISSNHLEGPSP-SLPSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLP 465
           + + +N +   SP +  +    ++L++N+    IS + +    NL YL L  N +S   P
Sbjct: 270 LKLGANQISNISPLAGLTALTNLELNENQLED-ISPISNLK--NLTYLTLYFNNISDISP 326

Query: 466 DCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVV 525
                   L+ L   NN  S    +S   L  +  LS  HN  S   P  L N T +  +
Sbjct: 327 --VSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQL 380

Query: 526 ALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKI-PFQLCHLADIQILDLSLNNISGN 584
            L + + +            N+ + +   N     I P  +         D++ N  S  
Sbjct: 381 GLNDQAWTNAPV----NYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLPSYT 436

Query: 585 IPKCFNNFTAMTQERSYNSSAITFSYAVP 613
               +      +Q  +      TFS  V 
Sbjct: 437 NEVSYT----FSQPVTIGKGTTTFSGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  125 bits (315), Expect = 2e-30
 Identities = 100/548 (18%), Positives = 183/548 (33%), Gaps = 106/548 (19%)

Query: 168 LGNLSRLQYLSLGYNKLLRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKT 227
              L+      LG   +    +    + L  +  L      +      +  V+ + +L  
Sbjct: 20  DTALAEKMKTVLGKTNV---TDTVSQTDLDQVTTLQADRLGIKS----IDGVEYLNNLTQ 72

Query: 228 LYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMIS 287
           +      L          + L +   L  + ++ N +         +++ +      + +
Sbjct: 73  INFSNNQL-------TDITPLKNLTKLVDILMNNNQIA--------DITPL----ANLTN 113

Query: 288 LRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWL 347
           L  LTL +N++    P   +N+  L  L L  N++  + +    S  + L+         
Sbjct: 114 LTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISA---LSGLTSLQ--------- 159

Query: 348 QTQKHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGI 407
                   L   +  ++D  P         L  L+ S N+++    + ++ +  LES  +
Sbjct: 160 -------QLSFGN-QVTDLKPL---ANLTTLERLDISSNKVSD--ISVLAKLTNLES--L 204

Query: 408 DISSNHLEGPSP-SLPSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPD 466
             ++N +   +P  + +N   + L+ N+    I  L S +  NL  LDL++N +S   P 
Sbjct: 205 IATNNQISDITPLGILTNLDELSLNGNQLKD-IGTLASLT--NLTDLDLANNQISNLAPL 261

Query: 467 CWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVA 526
             L    L  L L  N  S   P     L  +  L L+ N       S + N  +L  + 
Sbjct: 262 SGLT--KLTELKLGANQISNISP--LAGLTALTNLELNENQLED--ISPISNLKNLTYLT 315

Query: 527 LEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIP 586
           L  N+IS   P     SL  L  L   +N+        L +L +I  L    N IS   P
Sbjct: 316 LYFNNISDISPV---SSLTKLQRLFFYNNKV--SDVSSLANLTNINWLSAGHNQISDLTP 370

Query: 587 KCFNNFTAMTQ-ERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGL 645
               N T +TQ   +                T  PV+   ++ +                
Sbjct: 371 --LANLTRITQLGLNDQ------------AWTNAPVNYKANVSIP--------------- 401

Query: 646 VKSVDLSSNKLGGEV-PEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQF 704
               +   N  G  + P  I D       +++ N  + Y             +      F
Sbjct: 402 ----NTVKNVTGALIAPATISDGGSYTEPDITWNLPS-YTNEVSYTFSQPVTIGKGTTTF 456

Query: 705 SGGIPSSL 712
           SG +   L
Sbjct: 457 SGTVTQPL 464

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  115 bits (289), Expect = 3e-27
 Identities = 74/425 (17%), Positives = 146/425 (34%), Gaps = 89/425 (20%)

Query: 117 PALLKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQY 176
             L  L  L  L L  N  +       + +L+ L  L+L + + S      L  L+ LQ 
Sbjct: 106 TPLANLTNLTGLTLFNNQITDID---PLKNLTNLNRLELSSNTISDISA--LSGLTSLQQ 160

Query: 177 LSLGYNKLLRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQ 236
           LS G        +L  ++ L +L  LD+SS  +S     +  + K+ +L++L      + 
Sbjct: 161 LSFGNQVT----DLKPLANLTTLERLDISSNKVSD----ISVLAKLTNLESLIATNNQIS 212

Query: 237 LQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDN 296
                    + L    +L+ L L+ N L         ++ ++      + +L  L L++N
Sbjct: 213 -------DITPLGILTNLDELSLNGNQLK--------DIGTL----ASLTNLTDLDLANN 253

Query: 297 ELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVL 356
           ++    P     + KL  L L  N +  +      +  + L                  L
Sbjct: 254 QISNLAP--LSGLTKLTELKLGANQISNISP---LAGLTALT----------------NL 292

Query: 357 DISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEG 416
           +++   + D  P   S+    L  L    N ++   P  +SS+  L+   +   +N +  
Sbjct: 293 ELNENQLEDISP--ISNLK-NLTYLTLYFNNISDISP--VSSLTKLQR--LFFYNNKVSD 345

Query: 417 PSP-SLPSNAFYIDLSKNKFSG--PISFLCSFSGQNLVYLDLSSNLLSG---------KL 464
            S  +  +N  ++    N+ S   P++ L       +  L L+    +           +
Sbjct: 346 VSSLANLTNINWLSAGHNQISDLTPLANL-----TRITQLGLNDQAWTNAPVNYKANVSI 400

Query: 465 PDCWLQFNMLRIL--------NLANNNFSG----KIPNSCGYLQKMLTLSLHHNNFSGEL 512
           P+         I         +    + +               + +T+      FSG +
Sbjct: 401 PNTVKNVTGALIAPATISDGGSYTEPDITWNLPSYTNEVSYTFSQPVTIGKGTTTFSGTV 460

Query: 513 PSLLK 517
              LK
Sbjct: 461 TQPLK 465

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  102 bits (256), Expect = 5e-23
 Identities = 75/473 (15%), Positives = 153/473 (32%), Gaps = 89/473 (18%)

Query: 285 MISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFP 344
           +       L    +   +     ++ ++  L      ++ +         + L       
Sbjct: 23  LAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSIDG---VEYLNNLT------ 71

Query: 345 KWLQTQKHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILES 404
                      ++ S+  ++D  P    + + KL D+  ++NQ+       ++++  L  
Sbjct: 72  ----------QINFSNNQLTDITP--LKNLT-KLVDILMNNNQIAD--ITPLANLTNLTG 116

Query: 405 PGIDISSNHLEGPSP-SLPSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLS-- 461
             + + +N +    P    +N   ++LS N  S   +        +L  L   + +    
Sbjct: 117 --LTLFNNQITDIDPLKNLTNLNRLELSSNTISDISAL---SGLTSLQQLSFGNQVTDLK 171

Query: 462 --GKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNF 519
               L         L  L++++N  S    +    L  + +L   +N  S   P  L   
Sbjct: 172 PLANLTT-------LERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGIL 220

Query: 520 THLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLN 579
           T+L  ++L  N +  +I      SL NL  LDL +N+     P     L  +  L L  N
Sbjct: 221 TNLDELSLNGNQLK-DIGTL--ASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGAN 275

Query: 580 NISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEY 639
            IS   P      TA+T     N + +     + +   +                     
Sbjct: 276 QISNISP--LAGLTALT-NLELNENQLEDISPISNLKNL--------------------- 311

Query: 640 KNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDL 699
                    + L  N +       +  L  L  L    N ++      +  L ++++L  
Sbjct: 312 -------TYLTLYFNNI--SDISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSA 360

Query: 700 SRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGKIPTGTQLQSFNASVYDGNPEL 752
             NQ S   P  L+ + R++ + L+    +          S   +V +    L
Sbjct: 361 GHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGAL 411

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  101 bits (253), Expect = 1e-22
 Identities = 81/552 (14%), Positives = 164/552 (29%), Gaps = 146/552 (26%)

Query: 193 ISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSP 252
            + L       L   N++           +  + TL  ++  ++       S   +    
Sbjct: 20  DTALAEKMKTVLGKTNVTD----TVSQTDLDQVTTLQADRLGIK-------SIDGVEYLN 68

Query: 253 SLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIPKFFQNMFKL 312
           +L  +  S N LT        +++ +      +  L  + +++N++    P    N+  L
Sbjct: 69  NLTQINFSNNQLT--------DITPL----KNLTKLVDILMNNNQIADITP--LANLTNL 114

Query: 313 EGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAGISDSIPDWFS 372
            GL+L  N +  +           L                                   
Sbjct: 115 TGLTLFNNQITDI------DPLKNLT---------------------------------- 134

Query: 373 DTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSLPSNAFYIDLSK 432
                L  L  S N ++    + +S +  L+   +   +   +    +  +    +D+S 
Sbjct: 135 ----NLNRLELSSNTISD--ISALSGLTSLQQ--LSFGNQVTDLKPLANLTTLERLDISS 186

Query: 433 NKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSC 492
           NK S  IS L   +  NL  L  ++N +S   P        L  L+L  N        + 
Sbjct: 187 NKVSD-ISVLAKLT--NLESLIATNNQISDITPLG--ILTNLDELSLNGNQLKD--IGTL 239

Query: 493 GYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDL 552
             L  +  L L +N  S   P  L   T L  + L  N IS   P      L  L  L+L
Sbjct: 240 ASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPL---AGLTALTNLEL 294

Query: 553 RSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAV 612
             N+     P  + +L ++  L      +  N     +  +++T+               
Sbjct: 295 NENQLEDISP--ISNLKNLTYLT-----LYFNNISDISPVSSLTK--------------- 332

Query: 613 PSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIG 672
                                            ++ +   +NK+       + +L  +  
Sbjct: 333 ---------------------------------LQRLFFYNNKVSD--VSSLANLTNINW 357

Query: 673 LNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLS--G 730
           L+   N ++      +  L  +  L L+   ++    +  + V+  + +      L    
Sbjct: 358 LSAGHNQISDL--TPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPA 415

Query: 731 KIPTGTQLQSFN 742
            I  G      +
Sbjct: 416 TISDGGSYTEPD 427

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 96.2 bits (240), Expect = 5e-21
 Identities = 90/461 (19%), Positives = 154/461 (33%), Gaps = 104/461 (22%)

Query: 287 SLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKW 346
            L + T++ +    +I      + +     L   ++   +S    ++   +         
Sbjct: 2   PLGSATITQDTPINQIFTD-TALAEKMKTVLGKTNVTDTVS---QTDLDQVT-------- 49

Query: 347 LQTQKHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPG 406
                    L     GI   I          L  +NFS+NQ+T   P  + ++  L    
Sbjct: 50  --------TLQADRLGIKS-IDGVEYLN--NLTQINFSNNQLTDITP--LKNLTKLVD-- 94

Query: 407 IDISSNHLEGPSP-SLPSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLP 465
           I +++N +   +P +  +N   + L  N+ +  I  L + +  NL  L+LSSN +S    
Sbjct: 95  ILMNNNQIADITPLANLTNLTGLTLFNNQITD-IDPLKNLT--NLNRLELSSNTISD--I 149

Query: 466 DCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVV 525
                   L+ L+   N  +   P     L  +  L +  N  S    S+L   T+L  +
Sbjct: 150 SALSGLTSLQQLSF-GNQVTDLKPL--ANLTTLERLDISSNKVSD--ISVLAKLTNLESL 204

Query: 526 ALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNI 585
               N IS   P      L NL  L L  N+    I   L  L ++  LDL+ N IS   
Sbjct: 205 IATNNQISDITPL---GILTNLDELSLNGNQL-KDIGT-LASLTNLTDLDLANNQISNLA 259

Query: 586 PKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGL 645
           P   +  T +T                                                 
Sbjct: 260 P--LSGLTKLT------------------------------------------------- 268

Query: 646 VKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFS 705
              + L +N++       +  L  L  L L+ N L       I  L++L +L L  N  S
Sbjct: 269 --ELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNIS 322

Query: 706 GGIPSSLSQVNRLSVMDLSHNNLSGKIPTG--TQLQSFNAS 744
              P  +S + +L  +   +N +S        T +   +A 
Sbjct: 323 DISP--VSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAG 361

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  124 bits (314), Expect = 2e-30
 Identities = 83/458 (18%), Positives = 151/458 (32%), Gaps = 97/458 (21%)

Query: 125 LRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKL 184
           L  L  S N+ +  ++P    SL  L   +    + S   P        L+YL +  N+L
Sbjct: 93  LESLVASCNSLT--ELPELPQSLKSLLVDNNNLKALSDLPP-------LLEYLGVSNNQL 143

Query: 185 LRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRS 244
                L  +     L+ +D+ + +L K  D        PSL+ +      L+        
Sbjct: 144 ---EKLPELQNSSFLKIIDVDNNSLKKLPDLP------PSLEFIAAGNNQLE-------E 187

Query: 245 FSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIPK 304
              L + P L  +    N+L             +PD P    SL ++   +N L  E   
Sbjct: 188 LPELQNLPFLTAIYADNNSLK-----------KLPDLPL---SLESIVAGNNIL--EELP 231

Query: 305 FFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAGIS 364
             QN+  L  +    N L+                    P    + +  +V D     + 
Sbjct: 232 ELQNLPFLTTIYADNNLLK------------------TLPDLPPSLEALNVRDNYLTDLP 273

Query: 365 DSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSLPSN 424
           +            L  L+ S N  +        +++ L     + SSN +      LP +
Sbjct: 274 ELPQ--------SLTFLDVSENIFS-GLSELPPNLYYL-----NASSNEIRS-LCDLPPS 318

Query: 425 AFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNF 484
              +++S NK     +         L  L  S N L+ ++P+       L+ L++  N  
Sbjct: 319 LEELNVSNNKLIELPALPP-----RLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPL 369

Query: 485 SGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESL 544
             + P+    ++      L  N+   E+P L +N   L    +E N +    P       
Sbjct: 370 R-EFPDIPESVE-----DLRMNSHLAEVPELPQNLKQLH---VETNPLR-EFPDIPE--- 416

Query: 545 LNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNIS 582
            ++  L + S R      F       ++      ++  
Sbjct: 417 -SVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  122 bits (308), Expect = 1e-29
 Identities = 88/498 (17%), Positives = 166/498 (33%), Gaps = 104/498 (20%)

Query: 114 TLNPALLKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSG----------- 162
            +      +        +++ +  +  P   G   ++    L                  
Sbjct: 25  EMPVEAENVKSKTEYYNAWSEWERN-APPGNGEQREMAVSRLRDCLDRQAHELELNNLGL 83

Query: 163 -PIPPLLGNLSRLQYLSLGYNKLLRAGNL-DWISQLFSLRYLDLSSCNLSKSTDWLQEVD 220
             +P L  +   L+ L    N L     L +    L SL   + +   LS         D
Sbjct: 84  SSLPELPPH---LESLVASCNSL---TELPELPQSLKSLLVDNNNLKALS---------D 128

Query: 221 KIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPD 280
             P L+ L +    L+           L +S  L+ + +  N+L             +PD
Sbjct: 129 LPPLLEYLGVSNNQLE-------KLPELQNSSFLKIIDVDNNSLK-----------KLPD 170

Query: 281 APGPMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMG 340
            P    SL  +   +N+L+ E+P+  QN+  L  +    NSL+ +       +   +  G
Sbjct: 171 LPP---SLEFIAAGNNQLE-ELPE-LQNLPFLTAIYADNNSLKKLPDL--PLSLESIVAG 223

Query: 341 -------PHFPKWLQTQKHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFP 393
                  P            + +   +  +  ++PD        L  LN   N +T   P
Sbjct: 224 NNILEELPELQNL----PFLTTIYADNNLLK-TLPDLPP----SLEALNVRDNYLT-DLP 273

Query: 394 NYISSMFILESPGIDISSNHLEGPSPSLPSNAFYIDLSKNKFSGPISFLCSFSGQNLVYL 453
               S+  L     D+S N   G    LP N +Y++ S N+              +L  L
Sbjct: 274 ELPQSLTFL-----DVSENIFSGL-SELPPNLYYLNASSNEIRSLCDLP-----PSLEEL 322

Query: 454 DLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELP 513
           ++S+N L  +LP    +   L  L  + N+ + ++P     L++   L + +N    E P
Sbjct: 323 NVSNNKLI-ELPALPPR---LERLIASFNHLA-EVPELPQNLKQ---LHVEYNPLR-EFP 373

Query: 514 SLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQI 573
            + ++   LR+          +  A + E   NL  L + +N    + P     +   + 
Sbjct: 374 DIPESVEDLRM---------NSHLAEVPELPQNLKQLHVETNPLR-EFPDIPESV---ED 420

Query: 574 LDLSLNNISGNIPKCFNN 591
           L ++   +          
Sbjct: 421 LRMNSERVVDPYEFAHET 438

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 93.1 bits (232), Expect = 4e-20
 Identities = 79/498 (15%), Positives = 156/498 (31%), Gaps = 103/498 (20%)

Query: 249 NSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIPKFFQN 308
            S+  L+      +NLT            +P     + S      + +E +   P     
Sbjct: 8   VSNTFLQEPLRHSSNLT-----------EMPVEAENVKSKTEYYNAWSEWERNAPPGNGE 56

Query: 309 MFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAGISDSIP 368
             ++    LR                                +    L++++ G+S S+P
Sbjct: 57  QREMAVSRLRDCLD----------------------------RQAHELELNNLGLS-SLP 87

Query: 369 DWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSLPSNAFYI 428
           +        L  L  S N +T   P    S+  L     + +   L      LP    Y+
Sbjct: 88  ELPP----HLESLVASCNSLT-ELPELPQSLKSLLV--DNNNLKAL----SDLPPLLEYL 136

Query: 429 DLSKNKFSG--PISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSG 486
            +S N+      +          L  +D+ +N L  KLPD       L  +   NN    
Sbjct: 137 GVSNNQLEKLPELQNS-----SFLKIIDVDNNSLK-KLPD---LPPSLEFIAAGNNQLE- 186

Query: 487 KIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLN 546
           ++P     L  +  +   +N+   +LP L  +   +       N +   +P    ++L  
Sbjct: 187 ELPE-LQNLPFLTAIYADNNSLK-KLPDLPLSLESIV---AGNNILE-ELPEL--QNLPF 238

Query: 547 LVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAI 606
           L  +   +N     +P     L  + + D  L ++    P+   + T +    +  S   
Sbjct: 239 LTTIYADNNLL-KTLPDLPPSLEALNVRDNYLTDL----PELPQSLTFLDVSENIFSG-- 291

Query: 607 TFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMD 666
                +      L  ++      +          +    ++ +++S+NKL  E+P     
Sbjct: 292 -----LSELPPNL-YYLNASSNEIR------SLCDLPPSLEELNVSNNKLI-ELPALP-- 336

Query: 667 LVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHN 726
              L  L  S N+L   +      L+ L    +  N      P     V  L +    ++
Sbjct: 337 -PRLERLIASFNHLA-EVPELPQNLKQLH---VEYNPLR-EFPDIPESVEDLRM----NS 386

Query: 727 NLSGKIPTGTQLQSFNAS 744
           +L+        L+  +  
Sbjct: 387 HLAEVPELPQNLKQLHVE 404

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  119 bits (300), Expect = 2e-29
 Identities = 75/432 (17%), Positives = 150/432 (34%), Gaps = 89/432 (20%)

Query: 125 LRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKL 184
              L       +  QI      L++     L  AS +  +      L  +  L +   K+
Sbjct: 2   AATLATLPAPIN--QIF-PDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKV 56

Query: 185 LRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRS 244
               ++  I  L +L YL+L+   ++     +  +  +  L  LY+    +         
Sbjct: 57  ---ASIQGIEYLTNLEYLNLNGNQITD----ISPLSNLVKLTNLYIGTNKIT-------D 102

Query: 245 FSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIPK 304
            S L +  +L  L L+ +N++        ++S +      +  + +L L  N        
Sbjct: 103 ISALQNLTNLRELYLNEDNIS--------DISPL----ANLTKMYSLNLGANHN-LSDLS 149

Query: 305 FFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAGIS 364
              NM  L  L++  + ++ V      +N + L                  L ++   I 
Sbjct: 150 PLSNMTGLNYLTVTESKVKDVTP---IANLTDLYS----------------LSLNYNQIE 190

Query: 365 DSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSLPSN 424
           D  P     +   L       NQ+T      +++M  L S  + I +N +   SP     
Sbjct: 191 DISP---LASLTSLHYFTAYVNQITD-ITP-VANMTRLNS--LKIGNNKITDLSP----- 238

Query: 425 AFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNF 484
                         ++ L       L +L++ +N +S    +       L++LN+ +N  
Sbjct: 239 --------------LANL-----SQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQI 277

Query: 485 SGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESL 544
           S    +    L ++ +L L++N    E   ++   T+L  + L +N I+   P     SL
Sbjct: 278 SD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPL---ASL 332

Query: 545 LNLVVLDLRSNR 556
             +   D  +  
Sbjct: 333 SKMDSADFANQV 344

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  115 bits (291), Expect = 3e-28
 Identities = 71/416 (17%), Positives = 141/416 (33%), Gaps = 88/416 (21%)

Query: 168 LGNLSRLQYLSLGYNKLLRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKT 227
             +L+      L    +    ++    +L S+  L ++   ++     +Q ++ + +L+ 
Sbjct: 18  DADLAEGIRAVLQKASV---TDVVTQEELESITKLVVAGEKVAS----IQGIEYLTNLEY 70

Query: 228 LYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMIS 287
           L L    +          S L++   L  L +  N +T               A   + +
Sbjct: 71  LNLNGNQIT-------DISPLSNLVKLTNLYIGTNKIT------------DISALQNLTN 111

Query: 288 LRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWL 347
           LR L L+++ +    P    N+ K+  L+L  N     +S       S +          
Sbjct: 112 LRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-----PLSNMT--------- 155

Query: 348 QTQKHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGI 407
                                         L  L  + +++       I+++  L S  +
Sbjct: 156 -----------------------------GLNYLTVTESKVKD--VTPIANLTDLYS--L 182

Query: 408 DISSNHLEGPSP-SLPSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPD 466
            ++ N +E  SP +  ++  Y     N+ +  I+ + + +   L  L + +N ++     
Sbjct: 183 SLNYNQIEDISPLASLTSLHYFTAYVNQITD-ITPVANMT--RLNSLKIGNNKITD--LS 237

Query: 467 CWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVA 526
                + L  L +  N  S    N+   L K+  L++  N  S    S+L N + L  + 
Sbjct: 238 PLANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLF 293

Query: 527 LEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNIS 582
           L  N +       IG  L NL  L L  N      P     L+ +   D +   I 
Sbjct: 294 LNNNQLGNEDMEVIG-GLTNLTTLFLSQNHITDIRPLA--SLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  114 bits (287), Expect = 1e-27
 Identities = 71/393 (18%), Positives = 141/393 (35%), Gaps = 84/393 (21%)

Query: 117 PALLKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQY 176
               +L  +  L ++      + I   I  L+ LEYL+L     +   P  L NL +L  
Sbjct: 38  VTQEELESITKLVVAGEKV--ASIQ-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTN 92

Query: 177 LSLGYNKLLRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQ 236
           L +G NK+    ++  +  L +LR L L+  N+S     +  +  +  + +L L      
Sbjct: 93  LYIGTNKI---TDISALQNLTNLRELYLNEDNISD----ISPLANLTKMYSLNLGANHNL 145

Query: 237 LQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDN 296
              +     S++     L  L ++ + +         +V+ I      +  L +L+L+ N
Sbjct: 146 ---SDLSPLSNM---TGLNYLTVTESKVK--------DVTPI----ANLTDLYSLSLNYN 187

Query: 297 ELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVL 356
           +++   P    ++  L   +   N +  +      +N + L                  L
Sbjct: 188 QIEDISP--LASLTSLHYFTAYVNQITDITP---VANMTRLN----------------SL 226

Query: 357 DISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEG 416
            I +  I+D  P   ++ S +L  L    NQ++    N +  +  L+   +++ SN +  
Sbjct: 227 KIGNNKITDLSP--LANLS-QLTWLEIGTNQISD--INAVKDLTKLKM--LNVGSNQISD 279

Query: 417 PSPSLPSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRI 476
            S                    ++ L       L  L L++N L  +  +       L  
Sbjct: 280 IS-------------------VLNNL-----SQLNSLFLNNNQLGNEDMEVIGGLTNLTT 315

Query: 477 LNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFS 509
           L L+ N+ +   P     L KM +    +    
Sbjct: 316 LFLSQNHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  111 bits (279), Expect = 1e-26
 Identities = 74/393 (18%), Positives = 140/393 (35%), Gaps = 60/393 (15%)

Query: 356 LDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLE 415
           L    A I+   PD       +          +T         +  +    + ++   + 
Sbjct: 5   LATLPAPINQIFPD---ADLAEGIRAVLQKASVTD--VVTQEELESITK--LVVAGEKVA 57

Query: 416 GPSP-SLPSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNML 474
                   +N  Y++L+ N+ +  IS L +     L  L + +N ++            L
Sbjct: 58  SIQGIEYLTNLEYLNLNGNQITD-ISPLSNLV--KLTNLYIGTNKITD--ISALQNLTNL 112

Query: 475 RILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISG 534
           R L L  +N S   P     L KM +L+L  N+      S L N T L  + + E+ +  
Sbjct: 113 RELYLNEDNISDISPL--ANLTKMYSLNLGANHNLS-DLSPLSNMTGLNYLTVTESKVK- 168

Query: 535 NIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTA 594
           ++      +L +L  L L  N+     P  L  L  +      +N I+   P    N T 
Sbjct: 169 DVTPI--ANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTR 222

Query: 595 MTQ-ERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSS 653
           +   +   N   IT                  D+  L            L  +  +++ +
Sbjct: 223 LNSLKIGNNK--IT------------------DLSPLA----------NLSQLTWLEIGT 252

Query: 654 NKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLS 713
           N++       + DL  L  LN+  N ++  I+  +  L  L+ L L+ NQ        + 
Sbjct: 253 NQI--SDINAVKDLTKLKMLNVGSNQISD-ISV-LNNLSQLNSLFLNNNQLGNEDMEVIG 308

Query: 714 QVNRLSVMDLSHNNLSGKIPTG--TQLQSFNAS 744
            +  L+ + LS N+++   P    +++ S + +
Sbjct: 309 GLTNLTTLFLSQNHITDIRPLASLSKMDSADFA 341

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 94.5 bits (236), Expect = 5e-21
 Identities = 81/421 (19%), Positives = 150/421 (35%), Gaps = 79/421 (18%)

Query: 288 LRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWL 347
             TL      ++   P    ++ +     L+  S+  V++         +          
Sbjct: 2   AATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVT---QEELESIT--------- 47

Query: 348 QTQKHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGI 407
                   L ++   ++  I      T+  L  LN + NQ+T    + +S++  L +  +
Sbjct: 48  -------KLVVAGEKVAS-IQGIEYLTN--LEYLNLNGNQITD--ISPLSNLVKLTN--L 93

Query: 408 DISSNHLEGPSP-SLPSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPD 466
            I +N +   S     +N   + L+++  S  IS L + +   +  L+L +N     L  
Sbjct: 94  YIGTNKITDISALQNLTNLRELYLNEDNISD-ISPLANLT--KMYSLNLGANHNLSDLSP 150

Query: 467 -CWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVV 525
              +    L  L +  +      P     L  + +LSL++N      P  L + T L   
Sbjct: 151 LSNMTG--LNYLTVTESKVKDVTPI--ANLTDLYSLSLNYNQIEDISP--LASLTSLHYF 204

Query: 526 ALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNI 585
               N I+   P     ++  L  L + +N+     P  L +L+ +  L++  N IS   
Sbjct: 205 TAYVNQITDITP---VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD-- 257

Query: 586 PKCFNNFTAMTQ-ERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLG 644
                + T +       N   I+                  DI +L          N L 
Sbjct: 258 INAVKDLTKLKMLNVGSNQ--IS------------------DISVL----------NNLS 287

Query: 645 LVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQF 704
            + S+ L++N+LG E  E I  L  L  L LS+N++T      +  L  +D  D +    
Sbjct: 288 QLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDI--RPLASLSKMDSADFANQVI 345

Query: 705 S 705
            
Sbjct: 346 K 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 64.9 bits (159), Expect = 3e-11
 Identities = 35/247 (14%), Positives = 80/247 (32%), Gaps = 67/247 (27%)

Query: 500 TLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYG 559
           TL+      +   P    +        L++ S++  +     E L ++  L +   +   
Sbjct: 4   TLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVTQ---EELESITKLVVAGEKV-A 57

Query: 560 KIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTML 619
            I   + +L +++ L+L+ N I+   P   +N                            
Sbjct: 58  SIQG-IEYLTNLEYLNLNGNQITDISP--LSNLVK------------------------- 89

Query: 620 PVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNN 679
                                     + ++ + +NK+       + +L  L  L L+ +N
Sbjct: 90  --------------------------LTNLYIGTNKI--TDISALQNLTNLRELYLNEDN 121

Query: 680 LTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGKIPTG--TQ 737
           ++      +  L  +  L+L  N       S LS +  L+ + ++ + +    P    T 
Sbjct: 122 ISDI--SPLANLTKMYSLNLGANHNL-SDLSPLSNMTGLNYLTVTESKVKDVTPIANLTD 178

Query: 738 LQSFNAS 744
           L S + +
Sbjct: 179 LYSLSLN 185

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 57.6 bits (140), Expect = 6e-09
 Identities = 20/95 (21%), Positives = 40/95 (42%), Gaps = 6/95 (6%)

Query: 117 PALLKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQY 176
            A+  L  L+ L++  N  S   +   + +LS+L  L L           ++G L+ L  
Sbjct: 259 NAVKDLTKLKMLNVGSNQISDISV---LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTT 315

Query: 177 LSLGYNKLLRAGNLDWISQLFSLRYLDLSSCNLSK 211
           L L  N +    ++  ++ L  +   D ++  + K
Sbjct: 316 LFLSQNHI---TDIRPLASLSKMDSADFANQVIKK 347

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 44.8 bits (107), Expect = 8e-05
 Identities = 15/100 (15%), Positives = 39/100 (39%), Gaps = 8/100 (8%)

Query: 647 KSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSG 706
            ++      +    P+   DL   I   L + ++T  +T    +L+S+  L ++  + + 
Sbjct: 3   ATLATLPAPINQIFPDA--DLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVAS 58

Query: 707 GIPSSLSQVNRLSVMDLSHNNLSGKIPTG--TQLQSFNAS 744
                +  +  L  ++L+ N ++   P     +L +    
Sbjct: 59  --IQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIG 96

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  120 bits (303), Expect = 6e-29
 Identities = 69/543 (12%), Positives = 150/543 (27%), Gaps = 82/543 (15%)

Query: 144 IGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAGNLDWISQLFSLRYLD 203
             + ++ +   +  +S    +  L  +   ++ L L  N L +      ++    L  L+
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISA-ADLAPFTKLELLN 64

Query: 204 LSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNN 263
           LSS  L +      +++ + +L+TL L    +            L   PS+ETL  + NN
Sbjct: 65  LSSNVLYE----TLDLESLSTLRTLDLNNNYV----------QELLVGPSIETLHAANNN 110

Query: 264 LTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLE 323
           ++            +          + + L++N++            +++ L L+ N ++
Sbjct: 111 IS-----------RVS--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID 157

Query: 324 GVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAGISDSIPDWFSDTSHKLADLNF 383
            V      ++   L+                 L++    I   +          L  L+ 
Sbjct: 158 TVNFAELAASSDTLE----------------HLNLQYNFIY-DVKGQVVFAK--LKTLDL 198

Query: 384 SHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSLPSNAFYIDLSKNKFSGPISFLC 443
           S N++         S   +    I + +N L      +                 + F  
Sbjct: 199 SSNKLA-FMGPEFQSAAGVTW--ISLRNNKLV----LIEKA--------------LRFS- 236

Query: 444 SFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSL 503
               QNL + DL  N         +      R+  +A          +            
Sbjct: 237 ----QNLEHFDLRGNGFHCGTLRDFFS-KNQRVQTVAKQTVKKLTGQNEEECTVPTLGHY 291

Query: 504 HHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIG---ESLLNLVVLDLRSNRFYGK 560
                             L+       S  G+    +    E+      +D    ++   
Sbjct: 292 GAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTV 351

Query: 561 IPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLP 620
           I            L+     +   +         +          I   +A   ++ +  
Sbjct: 352 IDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQL 411

Query: 621 VHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEI--MDLVGLIGLNLSRN 678
           +          +   +    N +   +  D+  +K      E      L G   L L+  
Sbjct: 412 LRAIVKRYEEMYVEQQSVQNNAI---RDWDMYQHKETQLAEENARLKKLNGEADLALASA 468

Query: 679 NLT 681
           N T
Sbjct: 469 NAT 471

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  109 bits (274), Expect = 3e-25
 Identities = 66/459 (14%), Positives = 141/459 (30%), Gaps = 45/459 (9%)

Query: 277 SIPDAPGPMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSY 336
           +I +        +   ++D+ L   +    Q+ + ++ L L GN L   IS    + F+ 
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQ-ISAADLAPFTK 59

Query: 337 LKMGPHFPKWLQTQKHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYI 396
           L+                +L++SS  + +++       S  L  L+ ++N +       +
Sbjct: 60  LE----------------LLNLSSNVLYETLD--LESLS-TLRTLDLNNNYVQE-----L 95

Query: 397 SSMFILESPGIDISSNHLEGPSPSLPSNAFYIDLSKNKFSGPISFLCSFSG-QNLVYLDL 455
                +E+  +  ++N++   S S       I L+ NK +              + YLDL
Sbjct: 96  LVGPSIET--LHAANNNISRVSCSRGQGKKNIYLANNKITMLRDL--DEGCRSRVQYLDL 151

Query: 456 SSNLLSG-KLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPS 514
             N +      +     + L  LNL  N     +        K+ TL L  N  +  +  
Sbjct: 152 KLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA-FMGP 208

Query: 515 LLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQIL 574
             ++   +  ++L  N +   I   +     NL   DLR N F+           + ++ 
Sbjct: 209 EFQSAAGVTWISLRNNKLV-LIEKALR-FSQNLEHFDLRGNGFHCGTLRDF-FSKNQRVQ 265

Query: 575 DLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPV----HIFFDIVLL 630
            ++   +     +     T  T                  R   L       +       
Sbjct: 266 TVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSET 325

Query: 631 TWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQ 690
                E E +      + +D    +    + +  +     I L   +  L   ++     
Sbjct: 326 ERLECERENQARQ---REIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRA 382

Query: 691 LQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLS 729
              LD            +  +  + + L ++        
Sbjct: 383 HAELDGTLQQAVG-QIELQHATEEQSPLQLLRAIVKRYE 420

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  109 bits (274), Expect = 3e-25
 Identities = 70/505 (13%), Positives = 138/505 (27%), Gaps = 86/505 (17%)

Query: 94  RVKVLDIQTRVMSGNASLRGTLNPALLKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYL 153
           R K+  +     + + SL+  L         ++ LDLS N  S       +   +KLE L
Sbjct: 11  RYKIEKV-----TDS-SLKQALASLRQSAWNVKELDLSGNPLSQIS-AADLAPFTKLELL 63

Query: 154 DLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAGNLDWISQLFSLRYLDLSSCNLSKST 213
           +L +      +   L +LS L+ L L  N +        +    S+  L  ++ N+S+  
Sbjct: 64  NLSSNVLYETLD--LESLSTLRTLDLNNNYVQE------LLVGPSIETLHAANNNISRV- 114

Query: 214 DWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLF 273
                  +    K +YL    + +                ++ L L  N +    +  L 
Sbjct: 115 ----SCSRGQGKKNIYLANNKITMLRD--LDEGCR---SRVQYLDLKLNEIDTVNFAELA 165

Query: 274 --------------NVSSIPDAPGPMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRG 319
                          +  +         L+TL LS N+L   +   FQ+   +  +SLR 
Sbjct: 166 ASSDTLEHLNLQYNFIYDVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRN 223

Query: 320 NSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAGIS-DSIPDWFSDTSHKL 378
           N L  +           L+                  D+   G    ++ D+FS      
Sbjct: 224 NKLVLIEKA--LRFSQNLE----------------HFDLRGNGFHCGTLRDFFSKN---Q 262

Query: 379 ADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSLPSNAFYIDLSKNKFSGP 438
                +   +            +         +   E            +   ++     
Sbjct: 263 RVQTVAKQTVKKLTGQNEEECTVPTL--GHYGAYCCEDLPAPFADRLIALKRKEHAL--- 317

Query: 439 ISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKM 498
                         L    +    +L          R ++     +   I       Q  
Sbjct: 318 --------------LSGQGSETE-RLECERENQARQREIDALKEQYRTVIDQVTLRKQAK 362

Query: 499 LTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRF- 557
           +TL         ++ +  +    L     +             E    L +L     R+ 
Sbjct: 363 ITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQ--IELQHATEEQSPLQLLRAIVKRYE 420

Query: 558 YGKIPFQLCHLADIQILDLSLNNIS 582
              +  Q      I+  D+  +  +
Sbjct: 421 EMYVEQQSVQNNAIRDWDMYQHKET 445

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  107 bits (268), Expect = 1e-24
 Identities = 57/498 (11%), Positives = 142/498 (28%), Gaps = 63/498 (12%)

Query: 241 IHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDG 300
           IH    + N     +   ++ ++L            ++        +++ L LS N L  
Sbjct: 2   IHEIKQNGNR---YKIEKVTDSSLK----------QALASLRQSAWNVKELDLSGNPLSQ 48

Query: 301 EIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISS 360
                     KLE L+L  N L   +      + S L+                 LD+++
Sbjct: 49  ISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLR----------------TLDLNN 89

Query: 361 AGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPS 420
             +   +          +  L+ ++N ++    +       +      +++N +      
Sbjct: 90  NYVQ-ELL-----VGPSIETLHAANNNISRVSCSRGQGKKNI-----YLANNKIT----M 134

Query: 421 LPSNAF-------YIDLSKNKFSGPISFLCSFSG-QNLVYLDLSSNLLSGKLPDCWLQFN 472
           L            Y+DL  N+    ++F    +    L +L+L  N +   +    + F 
Sbjct: 135 LRDLDEGCRSRVQYLDLKLNEIDT-VNFAELAASSDTLEHLNLQYNFIY-DVKG-QVVFA 191

Query: 473 MLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSI 532
            L+ L+L++N  +  +         +  +SL +N     +   L+   +L    L  N  
Sbjct: 192 KLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGF 249

Query: 533 SGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNF 592
                         +  +  ++ +       + C +    +                +  
Sbjct: 250 HCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTV--PTLGHYGAYCCEDLPAPFADRL 307

Query: 593 TAMTQER-SYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDL 651
            A+ ++  +  S   + +  +             D +   ++    +         +++ 
Sbjct: 308 IALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQ 367

Query: 652 SSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSS 711
               L  +V         L G                 Q        + +      +   
Sbjct: 368 KKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQ 427

Query: 712 LSQVNRLSVMDLSHNNLS 729
             Q N +   D+  +  +
Sbjct: 428 SVQNNAIRDWDMYQHKET 445

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 48.7 bits (116), Expect = 5e-06
 Identities = 15/81 (18%), Positives = 31/81 (38%), Gaps = 1/81 (1%)

Query: 660 VPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLS 719
           + E   +        ++ ++L   +        ++  LDLS N  S    + L+   +L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 720 VMDLSHNNLSGKIPTGTQLQS 740
           +++LS N L         L +
Sbjct: 62  LLNLSSNVLYE-TLDLESLST 81

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  111 bits (279), Expect = 3e-26
 Identities = 71/398 (17%), Positives = 135/398 (33%), Gaps = 63/398 (15%)

Query: 164 IPPLLGNLSRLQYLSLGYNKLLRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIP 223
           I   L        + +           + I+ L + + +   +  + K    L  +D   
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDIT-LNNQKIVTFKNSTMRKLPAAL--LDSFR 69

Query: 224 SLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPG 283
            ++ L L    ++   T   +F++     +++ L + +N +   + P +F          
Sbjct: 70  QVELLNLNDLQIEEIDT--YAFAYA---HTIQKLYMGFNAIR-YLPPHVFQ--------- 114

Query: 284 PMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHF 343
            +  L  L L  N+L       F N  KL  LS+  N+LE  I +  F   + L+     
Sbjct: 115 NVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQ----- 168

Query: 344 PKWLQTQKHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILE 403
                       L +SS  ++             L   N S+N ++      ++    +E
Sbjct: 169 -----------NLQLSSNRLTHVDLSLIP----SLFHANVSYNLLS-----TLAIPIAVE 208

Query: 404 SPGIDISSNHLEGPSPSLPSNAF----YIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNL 459
              +D S N +      +          + L  N  +     L   +   LV +DLS N 
Sbjct: 209 E--LDASHNSIN----VVRGPVNVELTILKLQHNNLTDTAWLL---NYPGLVEVDLSYNE 259

Query: 460 LSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNF 519
           L   +   +++   L  L ++NN     +      +  +  L L HN+    +      F
Sbjct: 260 LEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQF 317

Query: 520 THLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRF 557
             L  + L+ NSI   +      +   L  L L  N +
Sbjct: 318 DRLENLYLDHNSIV-TLKL---STHHTLKNLTLSHNDW 351

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 95.9 bits (239), Expect = 3e-21
 Identities = 66/485 (13%), Positives = 142/485 (29%), Gaps = 113/485 (23%)

Query: 276 SSIPDAPGPMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFS 335
             I            + +     D         +   + ++ + +++   +      +F 
Sbjct: 11  KCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFR 69

Query: 336 YLKMGPHFPKWLQTQKHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNY 395
            ++                +L+++   I +     F+     +  L    N +    P+ 
Sbjct: 70  QVE----------------LLNLNDLQIEEIDTYAFAYAHT-IQKLYMGFNAIRYLPPHV 112

Query: 396 ISSMFILESPGIDISSNHLEGPSPSLPSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDL 455
             ++ +L    + +  N L     SLP   F+ +                    L  L +
Sbjct: 113 FQNVPLLTV--LVLERNDLS----SLPRGIFH-NTP-----------------KLTTLSM 148

Query: 456 SSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSL 515
           S+N L     D +     L+ L L++N  +  +      +  +   ++ +N  S  L   
Sbjct: 149 SNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDL--SLIPSLFHANVSYNLLS-TLAIP 204

Query: 516 LKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILD 575
                 +  +    NSI+  +        + L +L L+ N       + L +   +  +D
Sbjct: 205 ----IAVEELDASHNSIN-VVRG---PVNVELTILKLQHNNL-TDTAW-LLNYPGLVEVD 254

Query: 576 LSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGS 635
           LS N +                                     +  H F  +  L     
Sbjct: 255 LSYNEL-----------------------------------EKIMYHPFVKMQRLER--- 276

Query: 636 EYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLD 695
                        + +S+N+L   +      +  L  L+LS N+L  ++     Q   L+
Sbjct: 277 -------------LYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLE 321

Query: 696 FLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGKIPTGTQLQSFNASVYDGNPELCGL 755
            L L  N       S+   +  L    LSHN+           ++      D   + C +
Sbjct: 322 NLYLDHNSIVTLKLSTHHTLKNL---TLSHNDWDC-NSLRALFRNVARPAVDDADQHCKI 377

Query: 756 PLPSK 760
               +
Sbjct: 378 DYQLE 382

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 94.7 bits (236), Expect = 7e-21
 Identities = 65/324 (20%), Positives = 106/324 (32%), Gaps = 64/324 (19%)

Query: 118 ALLKLHYLRHLDLSFNNFSGSQIPMFI-GSLSKLEYLDLFAASFSGPIPPLLGNLSRLQY 176
           A    H ++ L + FN      +P  +  ++  L  L L     S     +  N  +L  
Sbjct: 88  AFAYAHTIQKLYMGFNAI--RYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTT 145

Query: 177 LSLGYNKLLRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQ 236
           LS+  N L R  + D      SL+ L LSS  L+           IPSL    +      
Sbjct: 146 LSMSNNNLERIED-DTFQATTSLQNLQLSSNRLTHVDL-----SLIPSLFHANVS----- 194

Query: 237 LQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDN 296
                +   S L    ++E L  S+N++             +       + L  L L  N
Sbjct: 195 -----YNLLSTLAIPIAVEELDASHNSIN-----------VVR--GPVNVELTILKLQHN 236

Query: 297 ELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVL 356
            L  +   +  N   L  + L  N LE  I  H F     L+                 L
Sbjct: 237 NLT-DTA-WLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLE----------------RL 277

Query: 357 DISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEG 416
            IS+  +  ++  +       L  L+ SHN +             LE+  + +  N +  
Sbjct: 278 YISNNRLV-ALNLYGQPIP-TLKVLDLSHNHLL-HVERNQPQFDRLEN--LYLDHNSIV- 331

Query: 417 PSPSLPSNAF----YIDLSKNKFS 436
              +L  +       + LS N + 
Sbjct: 332 ---TLKLSTHHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 52.0 bits (125), Expect = 4e-07
 Identities = 28/139 (20%), Positives = 43/139 (30%), Gaps = 15/139 (10%)

Query: 117 PALLKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQY 176
             LL    L  +DLS+N         F+  + +LE L +        +      +  L+ 
Sbjct: 242 AWLLNYPGLVEVDLSYNELEKIMYHPFVK-MQRLERLYISNNRLVA-LNLYGQPIPTLKV 299

Query: 177 LSLGYNKLLRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQ---- 232
           L L +N LL         Q   L  L L   ++      L+      +LK L L      
Sbjct: 300 LDLSHNHLLHVE--RNQPQFDRLENLYLDHNSIVT----LKL-STHHTLKNLTLSHNDWD 352

Query: 233 --CDLQLQPTIHRSFSHLN 249
                 L   + R      
Sbjct: 353 CNSLRALFRNVARPAVDDA 371

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 45.4 bits (108), Expect = 5e-05
 Identities = 18/91 (19%), Positives = 28/91 (30%), Gaps = 5/91 (5%)

Query: 114 TLNPALLKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSR 173
            LN     +  L+ LDLS N+     +        +LE L L   S    +         
Sbjct: 286 ALNLYGQPIPTLKVLDLSHNHLL--HVERNQPQFDRLENLYLDHNSIV-TLKL--STHHT 340

Query: 174 LQYLSLGYNKLLRAGNLDWISQLFSLRYLDL 204
           L+ L+L +N             +      D 
Sbjct: 341 LKNLTLSHNDWDCNSLRALFRNVARPAVDDA 371

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  104 bits (262), Expect = 1e-24
 Identities = 59/394 (14%), Positives = 123/394 (31%), Gaps = 79/394 (20%)

Query: 140 IPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAGNLDWISQLFSL 199
           I     + ++ +   +  +S    +  L  +   ++ L L  N  L   +   ++    L
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNP-LSQISAADLAPFTKL 60

Query: 200 RYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGL 259
             L+LSS  L +      +++ + +L+TL L    +            L   PS+ETL  
Sbjct: 61  ELLNLSSNVLYE----TLDLESLSTLRTLDLNNNYV----------QELLVGPSIETLHA 106

Query: 260 SYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRG 319
           + NN++            +          + + L++N++            +++ L L+ 
Sbjct: 107 ANNNIS-----------RVS--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKL 153

Query: 320 NSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAGISDSIPDWFSDTSHKLA 379
           N ++ V      ++   L+                 L++    I   +          L 
Sbjct: 154 NEIDTVNFAELAASSDTLE----------------HLNLQYNFIY-DVKGQVVFAK--LK 194

Query: 380 DLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSLPSNAFYIDLSKNKFSGPI 439
            L+ S N++         S   +    I + +N L      +                 +
Sbjct: 195 TLDLSSNKLA-FMGPEFQSAAGVTW--ISLRNNKLV----LIEKA--------------L 233

Query: 440 SFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKML 499
            F      QNL + DL  N                R+  +A      K+         + 
Sbjct: 234 RFS-----QNLEHFDLRGNGFHC-GTLRDFFSKNQRVQTVAKQTVK-KLTGQNEEECTVP 286

Query: 500 TLSLHHNNFSGELPSLLKNFTHLRVVALEENSIS 533
           TL  +      +LP+        R++AL  +   
Sbjct: 287 TLGHYGAYCCEDLPAPF----ADRLIALGHHHHH 316

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 97.8 bits (244), Expect = 3e-22
 Identities = 54/308 (17%), Positives = 109/308 (35%), Gaps = 37/308 (12%)

Query: 277 SIPDAPGPMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSY 336
           +I +        +   ++D+ L   +    Q+ + ++ L L GN L   IS    + F+ 
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQ-ISAADLAPFTK 59

Query: 337 LKMGPHFPKWLQTQKHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYI 396
           L+                +L++SS  +     D     S  L  L+ ++N +       +
Sbjct: 60  LE----------------LLNLSSNVLY-ETLD-LESLS-TLRTLDLNNNYVQ-----EL 95

Query: 397 SSMFILESPGIDISSNHLEGPSPSLPSNAFYIDLSKNKFSGPISFLCSFSG-QNLVYLDL 455
                +E+  +  ++N++   S S       I L+ NK +              + YLDL
Sbjct: 96  LVGPSIET--LHAANNNISRVSCSRGQGKKNIYLANNKITMLRDL--DEGCRSRVQYLDL 151

Query: 456 SSNLLSG-KLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPS 514
             N +      +     + L  LNL  N     +        K+ TL L  N  +  +  
Sbjct: 152 KLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVV-FAKLKTLDLSSNKLA-FMGP 208

Query: 515 LLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQIL 574
             ++   +  ++L  N +   I   +     NL   DLR N F+     +     + ++ 
Sbjct: 209 EFQSAAGVTWISLRNNKLV-LIEKALR-FSQNLEHFDLRGNGFHC-GTLRDFFSKNQRVQ 265

Query: 575 DLSLNNIS 582
            ++   + 
Sbjct: 266 TVAKQTVK 273

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 96.2 bits (240), Expect = 7e-22
 Identities = 65/339 (19%), Positives = 111/339 (32%), Gaps = 53/339 (15%)

Query: 427 YIDLSKNKFSGPISFLCSFSG-QNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFS 485
              ++ +     ++ L       N+  LDLS N LS         F  L +LNL++N   
Sbjct: 14  IEKVTDSSLKQALASL--RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY 71

Query: 486 GKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLL 545
            +  +    L  + TL L++N    EL         +  +    N+IS  +         
Sbjct: 72  -ETLDLES-LSTLRTLDLNNNYVQ-ELLVG----PSIETLHAANNNIS-RVSC---SRGQ 120

Query: 546 NLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISG-NIPKCFNNFTAMTQER-SYNS 603
               + L +N+            + +Q LDL LN I   N  +   +   +      YN 
Sbjct: 121 GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN- 179

Query: 604 SAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEE 663
                          +   +                      +K++DLSSNKL   +  E
Sbjct: 180 -----------FIYDVKGQVV------------------FAKLKTLDLSSNKLA-FMGPE 209

Query: 664 IMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGG-IPSSLSQVNRLSVMD 722
                G+  ++L  N L   I   +   Q+L+  DL  N F  G +    S+  R+  + 
Sbjct: 210 FQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVA 268

Query: 723 LSHNN----LSGKIPTGTQLQSFNASVYDGNPELCGLPL 757
                     + +  T   L  + A   +  P      L
Sbjct: 269 KQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRL 307

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 90.0 bits (224), Expect = 1e-19
 Identities = 50/276 (18%), Positives = 94/276 (34%), Gaps = 37/276 (13%)

Query: 464 LPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLR 523
           + +     N  +I  + +++    + +       +  L L  N  S    + L  FT L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 524 VVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISG 583
           ++ L  N +         ESL  L  LDL +N        +L     I+ L  + NNIS 
Sbjct: 62  LLNLSSNVLY-ETLDL--ESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS- 112

Query: 584 NIPKCFNNFTAMTQER-SYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTW---------K 633
            +    +          + N            + TML          + +          
Sbjct: 113 RVS--CSRGQGKKNIYLANN------------KITMLRDLDEGCRSRVQYLDLKLNEIDT 158

Query: 634 GSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQS 693
            +  E   +   ++ ++L  N +  +V  +++    L  L+LS N L  ++ P+      
Sbjct: 159 VNFAELAASSDTLEHLNLQYNFI-YDVKGQVV-FAKLKTLDLSSNKLA-FMGPEFQSAAG 215

Query: 694 LDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLS 729
           + ++ L  N+    I  +L     L   DL  N   
Sbjct: 216 VTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 87.7 bits (218), Expect = 6e-19
 Identities = 36/205 (17%), Positives = 65/205 (31%), Gaps = 26/205 (12%)

Query: 118 ALLKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYL 177
            LL    +  L  + NN S  ++          + + L     +       G  SR+QYL
Sbjct: 94  ELLVGPSIETLHAANNNIS--RVS--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYL 149

Query: 178 SLGYNKLLRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQL 237
            L  N++      +  +   +L +L+L    +      ++       LKTL L    L  
Sbjct: 150 DLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD----VKGQVVFAKLKTLDLSSNKLA- 204

Query: 238 QPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNE 297
              +   F        +  + L  N L             I  A     +L    L  N 
Sbjct: 205 --FMGPEFQSA---AGVTWISLRNNKLV-----------LIEKALRFSQNLEHFDLRGNG 248

Query: 298 LD-GEIPKFFQNMFKLEGLSLRGNS 321
              G +  FF    +++ ++ +   
Sbjct: 249 FHCGTLRDFFSKNQRVQTVAKQTVK 273

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 62.3 bits (152), Expect = 2e-10
 Identities = 21/107 (19%), Positives = 44/107 (41%), Gaps = 3/107 (2%)

Query: 638 EYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFL 697
           E K      K   ++ + L   +         +  L+LS N L+      +     L+ L
Sbjct: 4   EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELL 63

Query: 698 DLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGKIPTGTQLQSFNAS 744
           +LS N         L  ++ L  +DL++N +  ++  G  +++ +A+
Sbjct: 64  NLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ-ELLVGPSIETLHAA 107

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 56.5 bits (137), Expect = 1e-08
 Identities = 15/90 (16%), Positives = 31/90 (34%), Gaps = 3/90 (3%)

Query: 117 PALLKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQY 176
              +    L+ LDLS N    + +     S + + ++ L        I   L     L++
Sbjct: 185 KGQVVFAKLKTLDLSSNKL--AFMGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEH 241

Query: 177 LSLGYNKLLRAGNLDWISQLFSLRYLDLSS 206
             L  N        D+ S+   ++ +   +
Sbjct: 242 FDLRGNGFHCGTLRDFFSKNQRVQTVAKQT 271

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 48.1 bits (115), Expect = 7e-06
 Identities = 15/80 (18%), Positives = 31/80 (38%), Gaps = 1/80 (1%)

Query: 661 PEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSV 720
            E   +        ++ ++L   +        ++  LDLS N  S    + L+   +L +
Sbjct: 3   HEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLEL 62

Query: 721 MDLSHNNLSGKIPTGTQLQS 740
           ++LS N L  +      L +
Sbjct: 63  LNLSSNVLY-ETLDLESLST 81

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  107 bits (268), Expect = 2e-24
 Identities = 79/401 (19%), Positives = 128/401 (31%), Gaps = 117/401 (29%)

Query: 125 LRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPP-LLGNLSRLQYLSLGYNK 183
            R LDL  N         F      LE L+L     S  + P    NL  L+ L L  N+
Sbjct: 34  TRLLDLGKNRIKTLNQDEFAS-FPHLEELELNENIVSA-VEPGAFNNLFNLRTLGLRSNR 91

Query: 184 L--LRAGNLDWISQLFSLRYLDLSSCNLSK-STDWLQEVDKIPSLKTLYLEQCDLQ-LQP 239
           L  +  G     + L +L  LD+S   +        Q+   + +LK+L +   DL  +  
Sbjct: 92  LKLIPLGVF---TGLSNLTKLDISENKIVILLDYMFQD---LYNLKSLEVGDNDLVYISH 145

Query: 240 TIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPD-APGPMISLRTLTLSDNEL 298
              R+FS L    SLE L L   NLT           SIP  A   +  L  L L    +
Sbjct: 146 ---RAFSGL---NSLEQLTLEKCNLT-----------SIPTEALSHLHGLIVLRLRHLNI 188

Query: 299 DGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDI 358
           +      F+ +++L+ L +        ++ +     +                       
Sbjct: 189 NAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLN----------------------- 225

Query: 359 SSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPS 418
                              L  L+ +H  +T                             
Sbjct: 226 -------------------LTSLSITHCNLT----------------------------- 237

Query: 419 PSLPSNAF-------YIDLSKNKFSGPISFL--CSFSG-QNLVYLDLSSNLLSGKLPDCW 468
            ++P  A        +++LS N    PIS +          L  + L    L+   P  +
Sbjct: 238 -AVPYLAVRHLVYLRFLNLSYN----PISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAF 292

Query: 469 LQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFS 509
              N LR+LN++ N  +    +    +  + TL L  N  +
Sbjct: 293 RGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  104 bits (262), Expect = 8e-24
 Identities = 68/343 (19%), Positives = 120/343 (34%), Gaps = 51/343 (14%)

Query: 251 SPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIPKFFQNMF 310
                 L L  N +  ++    F              L  L L++N +    P  F N+F
Sbjct: 31  PTETRLLDLGKNRIK-TLNQDEF---------ASFPHLEELELNENIVSAVEPGAFNNLF 80

Query: 311 KLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAGISDSIPDW 370
            L  L LR N L+ +I    F+  S L                  LDIS   I   +   
Sbjct: 81  NLRTLGLRSNRLK-LIPLGVFTGLSNLT----------------KLDISENKIVILLDYM 123

Query: 371 FSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSLPSNAF---- 426
           F D  + L  L    N +        S +  LE   + +   +L     S+P+ A     
Sbjct: 124 FQDLYN-LKSLEVGDNDLVYISHRAFSGLNSLEQ--LTLEKCNLT----SIPTEALSHLH 176

Query: 427 ---YIDLSKNKFSGPISFL--CSFSG-QNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLA 480
               + L        I+ +   SF     L  L++S       +    L    L  L++ 
Sbjct: 177 GLIVLRLRHL----NINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSIT 232

Query: 481 NNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWI 540
           + N +     +  +L  +  L+L +N  S    S+L     L+ + L    ++  +  + 
Sbjct: 233 HCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLA-VVEPYA 291

Query: 541 GESLLNLVVLDLRSNRFYGKIPFQLCH-LADIQILDLSLNNIS 582
              L  L VL++  N+    +   + H + +++ L L  N ++
Sbjct: 292 FRGLNYLRVLNVSGNQL-TTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  101 bits (254), Expect = 1e-22
 Identities = 67/346 (19%), Positives = 117/346 (33%), Gaps = 43/346 (12%)

Query: 403 ESPGIDISSNHLEGPSPSLPSNAFYIDLSKNKFSGPISFLC--SFSG-QNLVYLDLSSNL 459
           +   +             +P+    +DL KN+    I  L    F+   +L  L+L+ N+
Sbjct: 12  QDRAVLCHRKRFVAVPEGIPTETRLLDLGKNR----IKTLNQDEFASFPHLEELELNENI 67

Query: 460 LSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNF 519
           +S   P  +     LR L L +N            L  +  L +  N     L  + ++ 
Sbjct: 68  VSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDL 127

Query: 520 THLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQ-LCHLADIQILDLSL 578
            +L+ + + +N +   I       L +L  L L        IP + L HL  + +L L  
Sbjct: 128 YNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNL-TSIPTEALSHLHGLIVLRLRH 185

Query: 579 NNISGNIPKCFNNFTAM-TQERSYNSSAITFSYAVPSRT------------TMLPVHIFF 625
            NI+      F     +   E S+     T +                   T +P     
Sbjct: 186 LNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVR 245

Query: 626 DIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEI-MDLVGLIGLNLSRNNLTGYI 684
            +V L                + ++LS N +   +   +  +L+ L  + L    L   +
Sbjct: 246 HLVYL----------------RFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQLA-VV 287

Query: 685 TPKI-GQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLS 729
            P     L  L  L++S NQ +    S    V  L  + L  N L+
Sbjct: 288 EPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 98.3 bits (245), Expect = 1e-21
 Identities = 64/329 (19%), Positives = 111/329 (33%), Gaps = 56/329 (17%)

Query: 118 ALLKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYL 177
                 +L  L+L+ N  S  +   F   L  L  L L +         +   LS L  L
Sbjct: 51  EFASFPHLEELELNENIVSAVEPGAFNN-LFNLRTLGLRSNRLKLIPLGVFTGLSNLTKL 109

Query: 178 SLGYNKL--LRAGNLDWISQLFSLRYLDLSSCNLSK-STDWLQEVDKIPSLKTLYLEQCD 234
            +  NK+  L          L++L+ L++   +L   S      +    SL+ L LE+C+
Sbjct: 110 DISENKIVILLDYMF---QDLYNLKSLEVGDNDLVYISHRAFSGL---NSLEQLTLEKCN 163

Query: 235 LQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLS 294
           L   PT   + SHL     L  L L + N+  +I  + F           +  L+ L +S
Sbjct: 164 LTSIPT--EALSHL---HGLIVLRLRHLNIN-AIRDYSFK---------RLYRLKVLEIS 208

Query: 295 DNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFS 354
                  +         L  LS+   +L   +      +  YL+                
Sbjct: 209 HWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLR---------------- 251

Query: 355 VLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHL 414
            L++S   IS        +   +L ++     Q+    P     +  L    +++S N L
Sbjct: 252 FLNLSYNPISTIEGSMLHEL-LRLQEIQLVGGQLAVVEPYAFRGLNYLRV--LNVSGNQL 308

Query: 415 EGPSPSLPSNAF-------YIDLSKNKFS 436
                +L  + F        + L  N  +
Sbjct: 309 T----TLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 87.9 bits (218), Expect = 3e-18
 Identities = 49/289 (16%), Positives = 85/289 (29%), Gaps = 55/289 (19%)

Query: 449 NLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNF 508
               LDL  N +     D +  F  L  L L  N  S   P +   L  + TL L  N  
Sbjct: 33  ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL 92

Query: 509 SGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQ-LCH 567
                 +    ++L  + + EN I   +  ++ + L NL  L++  N     I  +    
Sbjct: 93  KLIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDL-VYISHRAFSG 150

Query: 568 LADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDI 627
           L  ++ L L   N+                                   T +P       
Sbjct: 151 LNSLEQLTLEKCNL-----------------------------------TSIPTEALSH- 174

Query: 628 VLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPK 687
                          L  +  + L    +          L  L  L +S       +TP 
Sbjct: 175 ---------------LHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPN 219

Query: 688 IGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGKIPTGT 736
                +L  L ++    +     ++  +  L  ++LS+N +S  I    
Sbjct: 220 CLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS-TIEGSM 267

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 52.8 bits (127), Expect = 3e-07
 Identities = 34/186 (18%), Positives = 67/186 (36%), Gaps = 36/186 (19%)

Query: 554 SNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQER-SYNSSAITFSYAV 612
             + +  +P  +    + ++LDL  N I       F +F  + +   + N          
Sbjct: 19  HRKRFVAVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNEN---------- 66

Query: 613 PSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMD-LVGLI 671
               + +    F +                L  ++++ L SN+L   +P  +   L  L 
Sbjct: 67  --IVSAVEPGAFNN----------------LFNLRTLGLRSNRLK-LIPLGVFTGLSNLT 107

Query: 672 GLNLSRNNLTGYITPKI-GQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSG 730
            L++S N +   +   +   L +L  L++  N        + S +N L  + L   NL+ 
Sbjct: 108 KLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT- 165

Query: 731 KIPTGT 736
            IPT  
Sbjct: 166 SIPTEA 171

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  102 bits (256), Expect = 8e-24
 Identities = 59/395 (14%), Positives = 106/395 (26%), Gaps = 98/395 (24%)

Query: 168 LGNLSRLQYLSLGYNKLLRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKT 227
             + S  + L    +  LR    D +SQ       D +  + +          +  +   
Sbjct: 8   HHHSSGRENLYFQGSTALRP-YHDVLSQWQRHYNADRNRWHSAW---------RQANSNN 57

Query: 228 LYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMIS 287
             +E    +             + P    L L    L              PD    +  
Sbjct: 58  PQIETRTGRALKATADLLEDA-TQPGRVALELRSVPLP-----------QFPDQAFRLSH 105

Query: 288 LRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWL 347
           L+ +T+    L  E+P   Q    LE L+L  N L                         
Sbjct: 106 LQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR------------------------ 140

Query: 348 QTQKHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPG- 406
                             ++P   +  + +L +L+          P  ++S         
Sbjct: 141 ------------------ALPASIASLN-RLRELSIRACPELTELPEPLASTDASGEHQG 181

Query: 407 ------IDISSNHLEGPSPSLPSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLL 460
                 + +    +     SLP++              I+ L     QNL  L + ++ L
Sbjct: 182 LVNLQSLRLEWTGIR----SLPAS--------------IANL-----QNLKSLKIRNSPL 218

Query: 461 SGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFT 520
           S  L         L  L+L         P   G    +  L L   +    LP  +   T
Sbjct: 219 S-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLT 277

Query: 521 HLRVVALEENSISGNIPAWIGESLLNLVVLDLRSN 555
            L  + L        +P+ I   L    ++ +  +
Sbjct: 278 QLEKLDLRGCVNLSRLPSLIA-QLPANCIILVPPH 311

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 95.0 bits (237), Expect = 3e-21
 Identities = 44/210 (20%), Positives = 78/210 (37%), Gaps = 31/210 (14%)

Query: 120 LKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSL 179
                   L+L        Q P     LS L+++ + AA     +P  +   + L+ L+L
Sbjct: 78  ATQPGRVALELRSVPLP--QFPDQAFRLSHLQHMTIDAAGLME-LPDTMQQFAGLETLTL 134

Query: 180 GYNKLLRAGNL-DWISQLFSLRYLDLSSCNLSKS-------TDWLQEVDKIPSLKTLYLE 231
             N L     L   I+ L  LR L + +C            TD   E   + +L++L LE
Sbjct: 135 ARNPL---RALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLE 191

Query: 232 QCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTL 291
              ++   ++  S ++L    +L++L +  + L+           ++  A   +  L  L
Sbjct: 192 WTGIR---SLPASIANLQ---NLKSLKIRNSPLS-----------ALGPAIHHLPKLEEL 234

Query: 292 TLSDNELDGEIPKFFQNMFKLEGLSLRGNS 321
            L         P  F     L+ L L+  S
Sbjct: 235 DLRGCTALRNYPPIFGGRAPLKRLILKDCS 264

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 91.2 bits (227), Expect = 5e-20
 Identities = 41/289 (14%), Positives = 86/289 (29%), Gaps = 33/289 (11%)

Query: 448 QNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQ--KMLTLSLHH 505
           Q     D +    + +  +     N  +I             +          + L L  
Sbjct: 36  QRHYNADRNRWHSAWRQAN----SNNPQIETRTGRALK-ATADLLEDATQPGRVALELRS 90

Query: 506 NNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQL 565
                + P      +HL+ + ++   +   +P  +      L  L L  N     +P  +
Sbjct: 91  VPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQ-QFAGLETLTLARNPL-RALPASI 146

Query: 566 CHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFF 625
             L  ++ L +        +P+   +  A  + +   +  +       +    LP  I  
Sbjct: 147 ASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVN--LQSLRLEWTGIRSLPASIA- 203

Query: 626 DIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYIT 685
                            L  +KS+ + ++ L   +   I  L  L  L+L          
Sbjct: 204 ----------------NLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYP 246

Query: 686 PKIGQLQSLDFLDLS-RNQFSGGIPSSLSQVNRLSVMDLSHNNLSGKIP 733
           P  G    L  L L   +     +P  + ++ +L  +DL       ++P
Sbjct: 247 PIFGGRAPLKRLILKDCSNLL-TLPLDIHRLTQLEKLDLRGCVNLSRLP 294

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 87.7 bits (218), Expect = 7e-19
 Identities = 47/336 (13%), Positives = 108/336 (32%), Gaps = 43/336 (12%)

Query: 378 LADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSLPSNAFYIDLSKNKFSG 437
             +L F  +     + + +S      +   D +  H      +  +N      +      
Sbjct: 14  RENLYFQGSTALRPYHDVLSQWQRHYNA--DRNRWHSAWRQANS-NNPQIETRTGRALKA 70

Query: 438 PISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQK 497
               L   +    V L+L S  L  + PD   + + L+ + +       ++P++      
Sbjct: 71  TADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAG 128

Query: 498 MLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIG--------ESLLNLVV 549
           + TL+L  N     LP+ + +   LR +++        +P  +         + L+NL  
Sbjct: 129 LETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQS 187

Query: 550 LDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFS 609
           L L        +P  + +L +++ L +  + +S  +    ++   + +      +A+   
Sbjct: 188 LRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALR-- 243

Query: 610 YAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVG 669
                     P                         +K + L        +P +I  L  
Sbjct: 244 --------NYPPIFGG-----------------RAPLKRLILKDCSNLLTLPLDIHRLTQ 278

Query: 670 LIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFS 705
           L  L+L        +   I QL +   + +  +  +
Sbjct: 279 LEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 85.0 bits (211), Expect = 6e-18
 Identities = 57/375 (15%), Positives = 102/375 (27%), Gaps = 62/375 (16%)

Query: 143 FIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAGNLDWISQLFSLRYL 202
                S  E L    ++   P   +L    R                    +   + +  
Sbjct: 7   HHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWR-----QANSNNPQIE 61

Query: 203 DLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYN 262
             +   L  + D L++    P    L L    L            L+    L+ + +   
Sbjct: 62  TRTGRALKATADLLEDA-TQPGRVALELRSVPLP---QFPDQAFRLSH---LQHMTIDAA 114

Query: 263 NLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSL 322
            L             +PD       L TLTL+ N L   +P    ++ +L  LS+R    
Sbjct: 115 GLM-----------ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPE 162

Query: 323 EGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAGISDSIPDWFSDTSHKLADLN 382
              + E   S  +            Q   +   L +   GI  S+P   ++    L  L 
Sbjct: 163 LTELPEPLASTDA--------SGEHQGLVNLQSLRLEWTGIR-SLPASIANLQ-NLKSLK 212

Query: 383 FSHNQMTGRFPNYISSMFILESPGIDISS-NHLEGPSPSLPSNAFYIDLSKNKFSGPISF 441
             ++ ++      I  +  LE   +D+     L     + P                   
Sbjct: 213 IRNSPLSA-LGPAIHHLPKLEE--LDLRGCTALR----NYPPI--------------FGG 251

Query: 442 LCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTL 501
                   L  L L        LP    +   L  L+L       ++P+    L     +
Sbjct: 252 R-----APLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCII 306

Query: 502 SLHHNNFSGELPSLL 516
            +   +   +L    
Sbjct: 307 LV-PPHLQAQLDQHR 320

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 80.4 bits (199), Expect = 2e-16
 Identities = 53/359 (14%), Positives = 102/359 (28%), Gaps = 70/359 (19%)

Query: 247 HLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIPKFF 306
           H + S   E L    +              ++      +   +    +D        +  
Sbjct: 7   HHHHSSGRENLYFQGST-------------ALRPYHDVLSQWQRHYNADRNRWHSAWRQ- 52

Query: 307 QNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAGISDS 366
            N    +  +  G +L+        +                       L++ S  +   
Sbjct: 53  ANSNNPQIETRTGRALKATADLLEDATQPGRV----------------ALELRSVPLP-Q 95

Query: 367 IPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSLPSNAF 426
            PD     SH L  +      +    P+ +     LE+  + ++ N L     +LP++  
Sbjct: 96  FPDQAFRLSH-LQHMTIDAAGLM-ELPDTMQQFAGLET--LTLARNPLR----ALPAS-- 145

Query: 427 YIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPD---------CWLQFNMLRIL 477
                       I+ L       L  L + +     +LP+                L+ L
Sbjct: 146 ------------IASL-----NRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSL 188

Query: 478 NLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIP 537
            L        +P S   LQ + +L + ++  S  L   + +   L  + L   +   N P
Sbjct: 189 RLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYP 246

Query: 538 AWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMT 596
              G     L  L L+       +P  +  L  ++ LDL        +P       A  
Sbjct: 247 PIFG-GRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANC 304

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 79.2 bits (196), Expect = 4e-16
 Identities = 48/349 (13%), Positives = 108/349 (30%), Gaps = 51/349 (14%)

Query: 85  KVLDLHGTGRVKVLDIQTRVMSGNASLRGTLNPALLKLHYLRHLDLSFNNFSG-SQIPMF 143
           + L   G+  ++           + +       +  +     +  +              
Sbjct: 15  ENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADL 74

Query: 144 IGSLS--KLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAGNL-DWISQLFSLR 200
           +   +      L+L +       P     LS LQ++++    L+    L D + Q   L 
Sbjct: 75  LEDATQPGRVALELRSVPLPQ-FPDQAFRLSHLQHMTIDAAGLME---LPDTMQQFAGLE 130

Query: 201 YLDLSSCNLSKSTDWL-QEVDKIPSLKTLYLEQCDL--QLQPTI--HRSFSHLNSSPSLE 255
            L L+   L      L   +  +  L+ L +  C    +L   +    +        +L+
Sbjct: 131 TLTLARNPLRA----LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQ 186

Query: 256 TLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIPKFFQNMFKLEGL 315
           +L L +  +            S+P +   + +L++L + ++ L   +     ++ KLE L
Sbjct: 187 SLRLEWTGIR-----------SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEEL 234

Query: 316 SLRG-NSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAGISDSIPDWFSDT 374
            LRG  +L                   ++P     +     L +       ++P      
Sbjct: 235 DLRGCTALR------------------NYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRL 276

Query: 375 SHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSLPS 423
           + +L  L+        R P+ I+ +       I +  +         P 
Sbjct: 277 T-QLEKLDLRGCVNLSRLPSLIAQLPANCI--ILVPPHLQAQLDQHRPV 322

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 60.0 bits (146), Expect = 9e-10
 Identities = 32/281 (11%), Positives = 72/281 (25%), Gaps = 56/281 (19%)

Query: 491 SCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVL 550
              +      L    +        +L  +             +            N   +
Sbjct: 7   HHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA------NSNNPQI 60

Query: 551 DLRSNRFYGKIP--FQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITF 608
           + R+ R         +         L+L    +    P      + +          +T 
Sbjct: 61  ETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQH--------MTI 111

Query: 609 SYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLV 668
                +    LP  +                      ++++ L+ N L   +P  I  L 
Sbjct: 112 DA---AGLMELPDTMQ-----------------QFAGLETLTLARNPLR-ALPASIASLN 150

Query: 669 GLIGLNLSRNNLTGYITPKIGQ---------LQSLDFLDLSRNQFSGGIPSSLSQVNRLS 719
            L  L++        +   +           L +L  L L        +P+S++ +  L 
Sbjct: 151 RLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLK 209

Query: 720 VMDLSHNNLSGKIPTG----TQLQSFNASVYDGNPELCGLP 756
            + + ++ LS  +        +L+  +     G   L   P
Sbjct: 210 SLKIRNSPLS-ALGPAIHHLPKLEELDLR---GCTALRNYP 246

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  101 bits (253), Expect = 1e-22
 Identities = 90/439 (20%), Positives = 140/439 (31%), Gaps = 95/439 (21%)

Query: 125 LRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKL 184
           + ++DLS N+            +++L        SFS         L  LQ+L +     
Sbjct: 32  VNYVDLSLNS------------IAELN-----ETSFSR--------LQDLQFLKVEQQTP 66

Query: 185 LRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQE--VDKIPSLKTLYLEQCDLQLQPTIH 242
                 +    L SL  L L      +    L+    + + +L+ L L QC+L       
Sbjct: 67  GLVIRNNTFRGLSSLIILKLDYNQFLQ----LETGAFNGLANLEVLTLTQCNLDGAVLSG 122

Query: 243 RSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEI 302
             F  L    SLE L L  NN+   I P  F ++        M     L L+ N++    
Sbjct: 123 NFFKPL---TSLEMLVLRDNNIK-KIQPASFFLN--------MRRFHVLDLTFNKVKSIC 170

Query: 303 PKFFQNMFK--LEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISS 360
            +   N        L L   +L          + +   +G             + LD+S 
Sbjct: 171 EEDLLNFQGKHFTLLRLSSITL---------QDMNEYWLGWEKCGNPFKNTSITTLDLSG 221

Query: 361 AGISDSIPDWFSD--TSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPS 418
            G  +S+   F D     K+  L  S++   G                            
Sbjct: 222 NGFKESMAKRFFDAIAGTKIQSLILSNSYNMGS--------------------------- 254

Query: 419 PSLPSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILN 478
            S     F  D     F G            +   DLS + +   L   +  F  L  L 
Sbjct: 255 -SFGHTNF-KDPDNFTFKG-------LEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLT 305

Query: 479 LANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPS-LLKNFTHLRVVALEENSISGNIP 537
           LA N  +    N+   L  +L L+L  N     + S + +N   L V+ L  N I   + 
Sbjct: 306 LAQNEINKIDDNAFWGLTHLLKLNLSQNFLG-SIDSRMFENLDKLEVLDLSYNHIR-ALG 363

Query: 538 AWIGESLLNLVVLDLRSNR 556
                 L NL  L L +N+
Sbjct: 364 DQSFLGLPNLKELALDTNQ 382

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 91.0 bits (226), Expect = 2e-19
 Identities = 81/374 (21%), Positives = 134/374 (35%), Gaps = 56/374 (14%)

Query: 419 PSLPSNAFYIDLSKNKFS--GPISFLCSFSGQNLVYLDLSSNLLSGKLP-DCWLQFNMLR 475
           P LP++  Y+DLS N  +     SF      Q+L +L +        +  + +   + L 
Sbjct: 26  PELPAHVNYVDLSLNSIAELNETSFS---RLQDLQFLKVEQQTPGLVIRNNTFRGLSSLI 82

Query: 476 ILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNF-SGELPS-LLKNFTHLRVVALEENSIS 533
           IL L  N F      +   L  +  L+L   N     L     K  T L ++ L +N+I 
Sbjct: 83  ILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIK 142

Query: 534 GNIPAWIGESLLNLVVLDLRSNR--------FYG--KIPFQLCHLADIQILDLSLNNISG 583
              PA    ++    VLDL  N+                F L  L+ I + D++   +  
Sbjct: 143 KIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGW 202

Query: 584 NIPKCF-------------NNFTAMTQERSYNSSAIT-----FSYAVPSRTTMLPVHIFF 625
                              N F     +R +++ A T           +  +      F 
Sbjct: 203 EKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFK 262

Query: 626 DIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMD-LVGLIGLNLSRNNLTGYI 684
           D    T+KG E         VK+ DLS +K+   + + +      L  L L++N +   I
Sbjct: 263 DPDNFTFKGLEASG------VKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEIN-KI 314

Query: 685 TPKI-GQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGKIPTGTQLQSFNA 743
                  L  L  L+LS+N            +++L V+DLS+N           +++   
Sbjct: 315 DDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYN----------HIRALGD 364

Query: 744 SVYDGNPELCGLPL 757
             + G P L  L L
Sbjct: 365 QSFLGLPNLKELAL 378

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 74.0 bits (182), Expect = 6e-14
 Identities = 65/368 (17%), Positives = 117/368 (31%), Gaps = 74/368 (20%)

Query: 252 PSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIPK-FFQNMF 310
             +  + LS N++   +    F+          +  L+ L +        I    F+ + 
Sbjct: 30  AHVNYVDLSLNSIA-ELNETSFS---------RLQDLQFLKVEQQTPGLVIRNNTFRGLS 79

Query: 311 KLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAGI-SDSIPD 369
            L  L L  N     +    F+  + L+                VL ++   +    +  
Sbjct: 80  SLIILKLDYNQFL-QLETGAFNGLANLE----------------VLTLTQCNLDGAVLSG 122

Query: 370 WFSDTSHKLADLNFSHNQMTGRFPNYI-SSMFILESPGIDISSNHLEGPSPSLPSNAFY- 427
            F      L  L    N +    P     +M       +D++ N ++    S+       
Sbjct: 123 NFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHV--LDLTFNKVK----SICEEDLLN 176

Query: 428 --------IDLSKNKFS-------GPISFLCSFSGQNLVYLDLSSNLLSG---------- 462
                   + LS            G       F   ++  LDLS N              
Sbjct: 177 FQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAI 236

Query: 463 ---KLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQ--KMLTLSLHHNNFSGELPSLLK 517
              K+    L  +     +  + NF      +   L+   + T  L  +     L S+  
Sbjct: 237 AGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFS 296

Query: 518 NFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIP---FQLCHLADIQIL 574
           +FT L  + L +N I+  I       L +L+ L+L  N   G I    F+  +L  +++L
Sbjct: 297 HFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFL-GSIDSRMFE--NLDKLEVL 352

Query: 575 DLSLNNIS 582
           DLS N+I 
Sbjct: 353 DLSYNHIR 360

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 68.6 bits (168), Expect = 3e-12
 Identities = 66/338 (19%), Positives = 118/338 (34%), Gaps = 48/338 (14%)

Query: 118 ALLKLHYLRHLDLSFNNFSGSQIP--MFIGSLSKLEYLDLFAASFSGPIPP--LLGNLSR 173
           A   L  L  L L+  N  G+ +    F   L+ LE L L   +    I P     N+ R
Sbjct: 98  AFNGLANLEVLTLTQCNLDGAVLSGNFFKP-LTSLEMLVLRDNNIKK-IQPASFFLNMRR 155

Query: 174 LQYLSLGYNKLLRAGNLDWIS------QLFSLRYLDLSSCNLSKSTDWLQEV-DKIPSLK 226
              L L +NK+      D ++       L  L  + L   N             K  S+ 
Sbjct: 156 FHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSIT 215

Query: 227 TLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPW--LFNVSSIPDAPGP 284
           TL L       + ++ + F    +   +++L LS +    S +      +  +       
Sbjct: 216 TLDLSGN--GFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLE 273

Query: 285 MISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFP 344
              ++T  LS +++   +   F +   LE L+L  N +   I ++ F   ++L       
Sbjct: 274 ASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLL------ 326

Query: 345 KWLQTQKHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILES 404
                      L++S   +  SI     +   KL  L+ S+N +          +  L+ 
Sbjct: 327 ----------KLNLSQNFLG-SIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKE 375

Query: 405 PGIDISSNHLEGPSPSLPSNAF-------YIDLSKNKF 435
             + + +N L+    S+P   F        I L  N +
Sbjct: 376 --LALDTNQLK----SVPDGIFDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 59.4 bits (144), Expect = 2e-09
 Identities = 39/187 (20%), Positives = 65/187 (34%), Gaps = 31/187 (16%)

Query: 120 LKLHYLRHLDLSFNNFSGSQIPMFIG-SLSKLEYLDLFAASFSGPIPP-LLGNLSRLQYL 177
           L   Y         NF       F G   S ++  DL  +     +   +  + + L+ L
Sbjct: 246 LSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFA-LLKSVFSHFTDLEQL 304

Query: 178 SLGYNKL--LRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEV--DKIPSLKTLYLEQC 233
           +L  N++  +          L  L  L+LS   L      +     + +  L+ L L   
Sbjct: 305 TLAQNEINKIDDNAFW---GLTHLLKLNLSQNFLG----SIDSRMFENLDKLEVLDLSYN 357

Query: 234 DLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPD-APGPMISLRTLT 292
            ++      +SF  L   P+L+ L L  N L            S+PD     + SL+ + 
Sbjct: 358 HIRALG--DQSFLGL---PNLKELALDTNQLK-----------SVPDGIFDRLTSLQKIW 401

Query: 293 LSDNELD 299
           L  N  D
Sbjct: 402 LHTNPWD 408

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 46.7 bits (111), Expect = 3e-05
 Identities = 40/259 (15%), Positives = 67/259 (25%), Gaps = 61/259 (23%)

Query: 511 ELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLC-HLA 569
           ++P L  +  ++    L  NSI+  +       L +L  L +        I       L+
Sbjct: 24  QVPELPAHVNYVD---LSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLS 79

Query: 570 DIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVL 629
            + IL L  N                                       L    F  +  
Sbjct: 80  SLIILKLDYNQF-----------------------------------LQLETGAFNGLAN 104

Query: 630 LTWKGSEYEYKNTLGLVKSVDLSSNKL-GGEVPEEIMD-LVGLIGLNLSRNNLTGYITPK 687
           L                  + L+   L G  +       L  L  L L  NN+   I P 
Sbjct: 105 LEV----------------LTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIK-KIQPA 147

Query: 688 I--GQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGKIPTGTQLQSFNASV 745
                ++    LDL+ N+        L          L  ++++ +      L       
Sbjct: 148 SFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGN 207

Query: 746 YDGNPELCGLPLPSKCWDE 764
              N  +  L L    + E
Sbjct: 208 PFKNTSITTLDLSGNGFKE 226

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  101 bits (254), Expect = 1e-22
 Identities = 87/556 (15%), Positives = 163/556 (29%), Gaps = 119/556 (21%)

Query: 172 SRLQYLSLGYNKL--LRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEV--DKIPSLKT 227
            +   L++  N +  L   ++  +S+L   R L +S   +      L          L+ 
Sbjct: 21  QKTTILNISQNYISELWTSDILSLSKL---RILIISHNRIQY----LDISVFKFNQELEY 73

Query: 228 LYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAP--GPM 285
           L L    L        S        +L+ L LS+N              ++P     G M
Sbjct: 74  LDLSHNKLV-----KISCHPT---VNLKHLDLSFNAFD-----------ALPICKEFGNM 114

Query: 286 ISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPK 345
             L+ L LS   L+        ++   + L + G +           +F+   +      
Sbjct: 115 SQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESL------ 168

Query: 346 WLQTQKHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISS------- 398
                     +   +      I D    T   L   N        +   ++S        
Sbjct: 169 ---------HIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTN 219

Query: 399 --MFILESPGIDISSNHL-EGPSPSLPSNAFYIDLSKNKFSGPISF----LCSFSGQNLV 451
             +  L    I+ + N           +  +Y  +S  K  G + F        S + L 
Sbjct: 220 PKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALS 279

Query: 452 YLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGE 511
              + S++        +  F+ + I N   +            +   L L   +N  +  
Sbjct: 280 IHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDT 339

Query: 512 LPSLLKNFTHLRVVALEENSISGNIPAWIG--ESLLNLVVLDLRSNRFYGKIPFQLC-HL 568
           +     + T L  + L+ N +   +         + +L  LD+  N          C   
Sbjct: 340 VFENCGHLTELETLILQMNQLK-ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWT 398

Query: 569 ADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIV 628
             +  L++S N ++  I +C                        P R  +L         
Sbjct: 399 KSLLSLNMSSNILTDTIFRCL-----------------------PPRIKVL--------- 426

Query: 629 LLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKI 688
                                DL SNK+   +P++++ L  L  LN++ N L        
Sbjct: 427 ---------------------DLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIF 464

Query: 689 GQLQSLDFLDLSRNQF 704
            +L SL  + L  N +
Sbjct: 465 DRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 91.5 bits (227), Expect = 2e-19
 Identities = 81/469 (17%), Positives = 153/469 (32%), Gaps = 78/469 (16%)

Query: 118 ALLKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYL 177
            +L L  LR L +S N      I +F     +LEYLDL        I         L++L
Sbjct: 40  DILSLSKLRILIISHNRIQYLDISVF-KFNQELEYLDLSHNKLVK-IS--CHPTVNLKHL 95

Query: 178 SLGYNKLLRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQL 237
            L +N             +  L++L LS+ +L KS                         
Sbjct: 96  DLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS------------------------- 130

Query: 238 QPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNE 297
                 S   +      + L +          P                   T +L    
Sbjct: 131 ------SVLPIAHLNISKVLLVLGETYGEKEDPEGLQ------------DFNTESLHIVF 172

Query: 298 LDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLD 357
              +   F  ++      +L  ++++ V+ ++  S F            LQT    S L 
Sbjct: 173 PTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLS------ILAKLQTNPKLSNLT 226

Query: 358 ISSAGISD-SIPDWFSDTSHK-LADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLE 415
           +++   +  S         H  +   + S+ ++ G           L+    D S   L+
Sbjct: 227 LNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQG----------QLDFRDFDYSGTSLK 276

Query: 416 GPSPSLPSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLR 475
                         +  + F  P S++      N+   + + +        C  + +   
Sbjct: 277 --------ALSIHQVVSDVFGFPQSYIYE-IFSNMNIKNFTVSGTRMVHMLCPSKISPFL 327

Query: 476 ILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFS--GELPSLLKNFTHLRVVALEENSIS 533
            L+ +NN  +  +  +CG+L ++ TL L  N      ++  +      L+ + + +NS+S
Sbjct: 328 HLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVS 387

Query: 534 GNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNIS 582
            +          +L+ L++ SN       F+ C    I++LDL  N I 
Sbjct: 388 YDEKKGDCSWTKSLLSLNMSSNIL-TDTIFR-CLPPRIKVLDLHSNKIK 434

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 87.6 bits (217), Expect = 3e-18
 Identities = 80/422 (18%), Positives = 159/422 (37%), Gaps = 43/422 (10%)

Query: 121 KLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLG 180
               L+HLDLSFN F    I    G++S+L++L L              ++  + +L++ 
Sbjct: 88  PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK------SSVLPIAHLNIS 141

Query: 181 YNKLLRAGNLDWISQLFSLRYLDLSSCNLSKSTDW-LQEVDKIPSLKTLYLEQCDLQLQP 239
              L+             L+  +  S ++   T+     +  +       LE  +++   
Sbjct: 142 KVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVL 201

Query: 240 TIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELD 299
             ++    L+    L+T     +NLT +     +N            ++   ++S+ +L 
Sbjct: 202 EDNKCSYFLSILAKLQTNP-KLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQ 260

Query: 300 GEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDIS 359
           G   +     F   G SL+  S+  V+S+ F    SY+             + FS ++I 
Sbjct: 261 G---QLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYI------------YEIFSNMNIK 305

Query: 360 SAGISD--SIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGP 417
           +  +S    +             L+FS+N +T         +  LE+  + +  N L+  
Sbjct: 306 NFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELET--LILQMNQLK-- 361

Query: 418 SPSLPSNAF---------YIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCW 468
              L   A           +D+S+N  S           ++L+ L++SSN+L+  +  C 
Sbjct: 362 --ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL 419

Query: 469 LQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALE 528
                +++L+L +N     IP     L+ +  L++  N        +    T L+ + L 
Sbjct: 420 PP--RIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLH 476

Query: 529 EN 530
            N
Sbjct: 477 TN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 81.4 bits (201), Expect = 3e-16
 Identities = 85/538 (15%), Positives = 166/538 (30%), Gaps = 103/538 (19%)

Query: 242 HRSFSHL--NSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELD 299
                H+  + S     L +S N ++                   +  LR L +S N + 
Sbjct: 9   KNGLIHVPKDLSQKTTILNISQNYIS----------ELWTSDILSLSKLRILIISHNRIQ 58

Query: 300 GEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDIS 359
                 F+   +LE L L  N L   IS H   N  +L +  +    L   K F  +   
Sbjct: 59  YLDISVFKFNQELEYLDLSHNKLVK-ISCHPTVNLKHLDLSFNAFDALPICKEFGNM--- 114

Query: 360 SAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSP 419
                            +L  L  S   +       I+ + I +   + +   + E   P
Sbjct: 115 ----------------SQLKFLGLSTTHLEKSSVLPIAHLNISKV-LLVLGETYGEKEDP 157

Query: 420 SLPSNAFYIDLSKNKFS-GPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILN 478
               +     L     +     F+   S + +  L+LS               N+  +L 
Sbjct: 158 EGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELS---------------NIKCVLE 202

Query: 479 LANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNF---THLRVVALEENSISGN 535
               ++   I        K+  L+L++   +      +      T +   ++    + G 
Sbjct: 203 DNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQ 262

Query: 536 I----PAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNN 591
           +      + G SL  L +  + S+ F     +     +++ I + +++        C + 
Sbjct: 263 LDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSK 322

Query: 592 FTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDL 651
            +            + FS    +  T         +  L                  + L
Sbjct: 323 ISPFLH--------LDFSN---NLLTDTVFENCGHLTELET----------------LIL 355

Query: 652 SSNKLG--GEVPEEIMDLVGLIGLNLSRNNLTGYITPKI-GQLQSLDFLDLSRNQFSGGI 708
             N+L    ++ E    +  L  L++S+N+++           +SL  L++S N  +  I
Sbjct: 356 QMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTI 415

Query: 709 PSSLSQVNRLSVMDLSHNNLSGKIPTGT--------------QLQSFNASVYDGNPEL 752
              L    R+ V+DL  N +   IP                 QL+S    ++D    L
Sbjct: 416 FRCLPP--RIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSL 470

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 70.3 bits (172), Expect = 1e-12
 Identities = 54/363 (14%), Positives = 100/363 (27%), Gaps = 46/363 (12%)

Query: 407 IDISSNHLEGPSPSLPSNAFYIDLSKNKFSGPISFLCSFSG-QNLVYLDLSSNLLSGKLP 465
           +D S N L      L      +++S+N  S   +          L  L +S N +   L 
Sbjct: 5   VDRSKNGLIHVPKDLSQKTTILNISQNYISELWTS--DILSLSKLRILIISHNRIQ-YLD 61

Query: 466 DCWLQFN-MLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFS--------GELPSL- 515
               +FN  L  L+L++N    KI   C     +  L L  N F         G +  L 
Sbjct: 62  ISVFKFNQELEYLDLSHNKLV-KIS--CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLK 118

Query: 516 -------------LKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIP 562
                        +    HL +  +              E L +     L       K  
Sbjct: 119 FLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEF 178

Query: 563 FQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVH 622
             +  ++   + +L L+NI   +     ++      +   +  ++        TT     
Sbjct: 179 HFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFI 238

Query: 623 IFFDIVLLT----------------WKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMD 666
               +V  T                          +L  +    + S+  G         
Sbjct: 239 RILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEI 298

Query: 667 LVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHN 726
              +   N + +           ++     LD S N  +  +  +   +  L  + L  N
Sbjct: 299 FSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMN 358

Query: 727 NLS 729
            L 
Sbjct: 359 QLK 361

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 68.0 bits (166), Expect = 6e-12
 Identities = 43/194 (22%), Positives = 70/194 (36%), Gaps = 27/194 (13%)

Query: 110 SLRGTLNPALLKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFS--GPIPPL 167
             R        K+    HLD S N  +   +    G L++LE L L          I  +
Sbjct: 311 GTRMVHMLCPSKISPFLHLDFSNNLLT-DTVFENCGHLTELETLILQMNQLKELSKIAEM 369

Query: 168 LGNLSRLQYLSLGYNKLLRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPS-LK 226
              +  LQ L +  N +         S   SL  L++SS  L+ +         +P  +K
Sbjct: 370 TTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTI-----FRCLPPRIK 424

Query: 227 TLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPD-APGPM 285
            L L    ++   +I +    L    +L+ L ++ N L            S+PD     +
Sbjct: 425 VLDLHSNKIK---SIPKQVVKL---EALQELNVASNQLK-----------SVPDGIFDRL 467

Query: 286 ISLRTLTLSDNELD 299
            SL+ + L  N  D
Sbjct: 468 TSLQKIWLHTNPWD 481

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  102 bits (255), Expect = 1e-22
 Identities = 65/331 (19%), Positives = 106/331 (32%), Gaps = 75/331 (22%)

Query: 253 SLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIPKFFQNMFKL 312
               L +  + LT           ++PD       + TL + DN L   +P        L
Sbjct: 41  GNAVLNVGESGLT-----------TLPDCLPA--HITTLVIPDNNLT-SLPALPPE---L 83

Query: 313 EGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAGISDSIPDWFS 372
             L + GN L                     P         S+       +         
Sbjct: 84  RTLEVSGNQLT------------------SLPVLPPGLLELSIFSNPLTHLPALPS---- 121

Query: 373 DTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSLPSNAFYIDLSK 432
                L  L    NQ+T   P     +  L      +S N L    P+LPS    +    
Sbjct: 122 ----GLCKLWIFGNQLT-SLPVLPPGLQEL-----SVSDNQLASL-PALPSELCKLWAYN 170

Query: 433 NKFSG-PISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNS 491
           N+ +  P+          L  L +S N L+  LP      + L  L   NN  +  +P  
Sbjct: 171 NQLTSLPMLP------SGLQELSVSDNQLA-SLPT---LPSELYKLWAYNNRLT-SLPAL 219

Query: 492 CGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLD 551
              L++   L +  N  +  LP L      L    +  N ++ ++P         L+ L 
Sbjct: 220 PSGLKE---LIVSGNRLT-SLPVLPSELKELM---VSGNRLT-SLPMLPS----GLLSLS 267

Query: 552 LRSNRFYGKIPFQLCHLADIQILDLSLNNIS 582
           +  N+   ++P  L HL+    ++L  N +S
Sbjct: 268 VYRNQL-TRLPESLIHLSSETTVNLEGNPLS 297

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 96.5 bits (240), Expect = 9e-21
 Identities = 57/309 (18%), Positives = 109/309 (35%), Gaps = 49/309 (15%)

Query: 421 LPSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLA 480
           L +    +++ ++     ++ L      ++  L +  N L+  LP        LR L ++
Sbjct: 38  LNNGNAVLNVGESG----LTTLPDCLPAHITTLVIPDNNLT-SLPA---LPPELRTLEVS 89

Query: 481 NNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWI 540
            N  +  +P     L ++   S         LP+L      L    +  N ++ ++P   
Sbjct: 90  GNQLT-SLPVLPPGLLELSIFSNPLT----HLPALPSGLCKLW---IFGNQLT-SLPVLP 140

Query: 541 GESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERS 600
                 L  L +  N+    +P     L     L    N ++ ++P   +    ++   S
Sbjct: 141 P----GLQELSVSDNQL-ASLPALPSEL---CKLWAYNNQLT-SLPMLPSGLQELSV--S 189

Query: 601 YNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEV 660
            N            +   LP        L  +             +K + +S N+L   +
Sbjct: 190 DN------------QLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLT-SL 236

Query: 661 PEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSV 720
           P    +L  L    +S N LT  +      L S   L + RNQ +  +P SL  ++  + 
Sbjct: 237 PVLPSELKEL---MVSGNRLT-SLPMLPSGLLS---LSVYRNQLT-RLPESLIHLSSETT 288

Query: 721 MDLSHNNLS 729
           ++L  N LS
Sbjct: 289 VNLEGNPLS 297

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 94.2 bits (234), Expect = 5e-20
 Identities = 71/378 (18%), Positives = 118/378 (31%), Gaps = 80/378 (21%)

Query: 224 SLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPG 283
               L + +  L   P              + TL +  NNLT           S+P  P 
Sbjct: 41  GNAVLNVGESGLTTLPD--------CLPAHITTLVIPDNNLT-----------SLPALPP 81

Query: 284 PMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHF 343
               LRTL +S N+L   +P     + +L   S     L                  P  
Sbjct: 82  ---ELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHL------------------PAL 119

Query: 344 PKWLQTQKHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILE 403
           P  L        L I    ++ S+P         L +L+ S NQ+    P   S +  L 
Sbjct: 120 PSGLCK------LWIFGNQLT-SLPVLPP----GLQELSVSDNQLA-SLPALPSELCKL- 166

Query: 404 SPGIDISSNHLEGPSPSLPSNAFYIDLSKNKFSG-PISFLCSFSGQNLVYLDLSSNLLSG 462
                  +N L    P LPS    + +S N+ +  P           L  L   +N L+ 
Sbjct: 167 ----WAYNNQLTS-LPMLPSGLQELSVSDNQLASLPTLP------SELYKLWAYNNRLT- 214

Query: 463 KLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHL 522
            LP      + L+ L ++ N  +  +P     L++   L +  N  +  LP L      L
Sbjct: 215 SLPA---LPSGLKELIVSGNRLTS-LPVLPSELKE---LMVSGNRLT-SLPMLPSGLLSL 266

Query: 523 RVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNIS 582
               +  N ++  +P  +   L +   ++L  N    +    L  +         +    
Sbjct: 267 S---VYRNQLT-RLPESLI-HLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFD 321

Query: 583 GNIPKCFNNFTAMTQERS 600
                      A+    +
Sbjct: 322 MAGASAPRETRALHLAAA 339

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 91.1 bits (226), Expect = 4e-19
 Identities = 74/396 (18%), Positives = 123/396 (31%), Gaps = 98/396 (24%)

Query: 351 KHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDIS 410
            H + L I    ++ S+P        +L  L  S NQ+T   P     +  L        
Sbjct: 61  AHITTLVIPDNNLT-SLPALPP----ELRTLEVSGNQLT-SLPVLPPGLLELSI--FSNP 112

Query: 411 SNHLEGPSPSLPSNAFYIDLSKNKFSG-PISFLCSFSGQNLVYLDLSSNLLSGKLPDCWL 469
             HL    P+LPS    + +  N+ +  P+          L  L +S N L+  LP    
Sbjct: 113 LTHL----PALPSGLCKLWIFGNQLTSLPVLP------PGLQELSVSDNQLA-SLPA--- 158

Query: 470 QFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEE 529
             + L  L   NN  +  +P     LQ+   LS+  N  +  LP+L      L       
Sbjct: 159 LPSELCKLWAYNNQLT-SLPMLPSGLQE---LSVSDNQLA-SLPTLPSELYKLW---AYN 210

Query: 530 NSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCF 589
           N ++ ++PA        L  L +  NR    +P     L   + L +S N +        
Sbjct: 211 NRLT-SLPALPS----GLKELIVSGNRL-TSLPVLPSEL---KELMVSGNRL-------- 253

Query: 590 NNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSV 649
                                      T LP                         + S+
Sbjct: 254 ---------------------------TSLP--------------------MLPSGLLSL 266

Query: 650 DLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIP 709
            +  N+L   +PE ++ L     +NL  N L+      + ++ S         +F     
Sbjct: 267 SVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGA 325

Query: 710 SSLSQVNRL--SVMDLSHNNLSGKIPTGTQLQSFNA 743
           S+  +   L  +  D       G+     +   F  
Sbjct: 326 SAPRETRALHLAAADWLVPAREGEPAPADRWHMFGQ 361

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 89.2 bits (221), Expect = 2e-18
 Identities = 54/297 (18%), Positives = 100/297 (33%), Gaps = 69/297 (23%)

Query: 449 NLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNF 508
               L++  + L+  LPDC      +  L + +NN +  +P     L+   TL +  N  
Sbjct: 41  GNAVLNVGESGLT-TLPDCLPAH--ITTLVIPDNNLT-SLPALPPELR---TLEVSGNQL 93

Query: 509 SGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHL 568
           +  LP L      L + +     +              L  L +  N+    +P     L
Sbjct: 94  T-SLPVLPPGLLELSIFSNPLTHLP--------ALPSGLCKLWIFGNQL-TSLPVLPPGL 143

Query: 569 ADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIV 628
              Q L +S N ++ ++P   +    +      N            + T LP+       
Sbjct: 144 ---QELSVSDNQLA-SLPALPSELCKLW--AYNN------------QLTSLPMLP----- 180

Query: 629 LLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKI 688
                            ++ + +S N+L   +P        L  L    N LT  +    
Sbjct: 181 ---------------SGLQELSVSDNQL-ASLPTLP---SELYKLWAYNNRLT-SLPALP 220

Query: 689 GQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGKIPTG-TQLQSFNAS 744
             L+    L +S N+ +  +P   S+   L  + +S N L+  +P   + L S +  
Sbjct: 221 SGLKE---LIVSGNRLT-SLPVLPSE---LKELMVSGNRLT-SLPMLPSGLLSLSVY 269

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 88.0 bits (218), Expect = 4e-18
 Identities = 62/361 (17%), Positives = 110/361 (30%), Gaps = 60/361 (16%)

Query: 125 LRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKL 184
           +  L +  NN +   +P       +L  L++     +  +P L   L  L   S     L
Sbjct: 63  ITTLVIPDNNLT--SLP---ALPPELRTLEVSGNQLTS-LPVLPPGLLELSIFSNPLTHL 116

Query: 185 LRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRS 244
                    +    L  L +    L+            P L+ L +    L   P     
Sbjct: 117 --------PALPSGLCKLWIFGNQLTSLPVL------PPGLQELSVSDNQLASLP----- 157

Query: 245 FSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIPK 304
                    L  L    N LT           S+P  P     L+ L++SDN+L   +P 
Sbjct: 158 ----ALPSELCKLWAYNNQLT-----------SLPMLPS---GLQELSVSDNQL-ASLPT 198

Query: 305 FFQNMFKLEGLSLRGNSLEGVIS--EHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAG 362
               ++KL   + R  SL  + S  +    + + L   P  P  L+       L +S   
Sbjct: 199 LPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVLPSELKE------LMVSGNR 252

Query: 363 ISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSLP 422
           ++ S+P   S     L  L+   NQ+T R P  +  +    +  +++  N L   +    
Sbjct: 253 LT-SLPMLPS----GLLSLSVYRNQLT-RLPESLIHLSSETT--VNLEGNPLSERTLQAL 304

Query: 423 SNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANN 482
                                S   +       +++ L           +   +    +N
Sbjct: 305 REITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWHMFGQEDN 364

Query: 483 N 483
            
Sbjct: 365 A 365

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 49.1 bits (117), Expect = 5e-06
 Identities = 34/226 (15%), Positives = 68/226 (30%), Gaps = 77/226 (34%)

Query: 520 THLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLN 579
               V+ + E+ ++  +P  +     ++  L +  N     +P     L   + L++S N
Sbjct: 40  NGNAVLNVGESGLT-TLPDCLPA---HITTLVIPDNNL-TSLPALPPEL---RTLEVSGN 91

Query: 580 NISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEY 639
            ++ ++P        ++                                           
Sbjct: 92  QLT-SLPVLPPGLLELSI------------------------------------------ 108

Query: 640 KNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDL 699
                           L    P       GL  L +  N LT  +      LQ    L +
Sbjct: 109 ---------FSNPLTHL----PAL---PSGLCKLWIFGNQLT-SLPVLPPGLQE---LSV 148

Query: 700 SRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGKIPTG-TQLQSFNAS 744
           S NQ +  +P+  S++ +L      +N L+  +P   + LQ  + S
Sbjct: 149 SDNQLA-SLPALPSELCKL---WAYNNQLT-SLPMLPSGLQELSVS 189

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  101 bits (254), Expect = 1e-22
 Identities = 77/497 (15%), Positives = 155/497 (31%), Gaps = 116/497 (23%)

Query: 114 TLNPALLKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSR 173
                 + L+  + +    +     ++P                         LL +  +
Sbjct: 42  YFGFEDITLNNQKIVTFKNSTM--RKLP-----------------------AALLDSFRQ 76

Query: 174 LQYLSLGYNKL--LRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLE 231
           ++ L+L   ++  +        +   +++ L +    +                      
Sbjct: 77  VELLNLNDLQIEEIDTYAF---AYAHTIQKLYMGFNAIR--------------------- 112

Query: 232 QCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIP-DAPGPMISLRT 290
                L P +   F ++   P L  L L  N+L+           S+P         L T
Sbjct: 113 ----YLPPHV---FQNV---PLLTVLVLERNDLS-----------SLPRGIFHNTPKLTT 151

Query: 291 LTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQ 350
           L++S+N L+      FQ    L+ L L  N L   +      +  +  +  +    L   
Sbjct: 152 LSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDLSLIPSLFHANVSYNLLSTLAIP 210

Query: 351 KHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDIS 410
                LD S   I+  +       + +L  L   HN +T     ++ +   L    +D+S
Sbjct: 211 IAVEELDASHNSIN-VVRG---PVNVELTILKLQHNNLTD--TAWLLNYPGLVE--VDLS 262

Query: 411 SNHLEGPSPSLPSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQ 470
            N LE     +  + F                     Q L  L +S+N L   L      
Sbjct: 263 YNELE----KIMYHPFV------------------KMQRLERLYISNNRLV-ALNLYGQP 299

Query: 471 FNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEEN 530
              L++L+L++N+    +  +     ++  L L HN+    L   L     L+ + L  N
Sbjct: 300 IPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHN 355

Query: 531 SISGNIPAWIGESLLNLVVLDLRSNRFYG-KIPFQLC------HLADIQILDLSLNNISG 583
               N    +  ++    V D   +     ++   LC         D  +  ++L ++  
Sbjct: 356 DWDCNSLRALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIALTSVVE 415

Query: 584 NIPKCFNNFTAMTQERS 600
            + +     +A     S
Sbjct: 416 KVQRAQGRCSATDTINS 432

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 97.7 bits (243), Expect = 4e-21
 Identities = 59/323 (18%), Positives = 119/323 (36%), Gaps = 20/323 (6%)

Query: 420 SLPSNAFYIDLSKNKFSGPISFLCSFSG-QNLVYLDLSSNLLSGKLPDCWLQFNMLRILN 478
           +L  +  + D+  +  +  + F        N   +   ++ +          F  + +LN
Sbjct: 22  NLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLN 81

Query: 479 LANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPA 538
           L +         +  Y   +  L +  N      P + +N   L V+ LE N +S ++P 
Sbjct: 82  LNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPR 140

Query: 539 WIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQ- 597
            I  +   L  L + +N               +Q L LS N ++ ++    +   ++   
Sbjct: 141 GIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHA 197

Query: 598 ERSYNS-SAITFSYAVPS------RTTMLPVHIFFDIVLLTWKG---SEYEYKNTLGLVK 647
             SYN  S +    AV           ++   +  ++ +L  +    ++  +      + 
Sbjct: 198 NVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLV 257

Query: 648 SVDLSSNKLGGEVPEEIMD-LVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSG 706
            VDLS N+L  ++       +  L  L +S N L   +      + +L  LDLS N    
Sbjct: 258 EVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL- 314

Query: 707 GIPSSLSQVNRLSVMDLSHNNLS 729
            +  +  Q +RL  + L HN++ 
Sbjct: 315 HVERNQPQFDRLENLYLDHNSIV 337

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 92.7 bits (230), Expect = 1e-19
 Identities = 70/418 (16%), Positives = 136/418 (32%), Gaps = 72/418 (17%)

Query: 356 LDISSAGISDSIPDWFSDTS-HKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHL 414
            D+     +  +   F D + +    + F ++ M       + S   +E   ++++   +
Sbjct: 30  YDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVEL--LNLNDLQI 87

Query: 415 EGPSPSLPSNAF-------YIDLSKNKFSGPISFL--CSFSG-QNLVYLDLSSNLLSGKL 464
           E     + + AF        + +  N     I +L    F     L  L L  N LS   
Sbjct: 88  E----EIDTYAFAYAHTIQKLYMGFNA----IRYLPPHVFQNVPLLTVLVLERNDLSSLP 139

Query: 465 PDCWLQFNMLRILNLANNNFSGKIPNSC-GYLQKMLTLSLHHNNFSGELPSLLKNFTHLR 523
              +     L  L+++NNN   +I +        +  L L  N  +  +   L     L 
Sbjct: 140 RGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLF 195

Query: 524 VVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISG 583
              +  N +S  +        + +  LD   N     +   +    ++ IL L  NN++ 
Sbjct: 196 HANVSYNLLS-TLAI-----PIAVEELDASHNSI-NVVRGPVN--VELTILKLQHNNLT- 245

Query: 584 NIPKCFNNFTAMTQ-ERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNT 642
           +      N+  + + + SYN                +  H F  +  L            
Sbjct: 246 DTAW-LLNYPGLVEVDLSYN------------ELEKIMYHPFVKMQRLE----------- 281

Query: 643 LGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRN 702
                 + +S+N+L   +      +  L  L+LS N+L  ++     Q   L+ L L  N
Sbjct: 282 -----RLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHN 334

Query: 703 QFSGGIPSSLSQVNRLSVMDLSHNNLSGKIPTGTQLQSFNASVYDGNPELCGLPLPSK 760
                  S+      L  + LSHN+           ++      D   + C +    +
Sbjct: 335 SIVTLKLSTHH---TLKNLTLSHNDWDC-NSLRALFRNVARPAVDDADQHCKIDYQLE 388

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 91.1 bits (226), Expect = 4e-19
 Identities = 72/485 (14%), Positives = 144/485 (29%), Gaps = 123/485 (25%)

Query: 244 SFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIP 303
                N         +  +  T  +Y    ++         + + + +T  ++ +     
Sbjct: 17  KCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDI--------TLNNQKIVTFKNSTMRKLPA 68

Query: 304 KFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAGI 363
               +  ++E L+L    +E  I  + F+    ++                 L +    I
Sbjct: 69  ALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQ----------------KLYMGFNAI 111

Query: 364 SDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYI-SSMFILESPGIDISSNHLEGPSPSLP 422
               P  F +    L  L    N ++   P  I  +   L +  + +S+N+LE     + 
Sbjct: 112 RYLPPHVFQNVP-LLTVLVLERNDLS-SLPRGIFHNTPKLTT--LSMSNNNLE----RIE 163

Query: 423 SNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANN 482
            + F                   +  +L  L LSSN L+  +         L   N++ N
Sbjct: 164 DDTFQ------------------ATTSLQNLQLSSNRLT-HVDLSL--IPSLFHANVSYN 202

Query: 483 NFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGE 542
             S     +      +  L   HN+ +  +   +     L ++ L+ N+++ +    +  
Sbjct: 203 LLS-----TLAIPIAVEELDASHNSIN-VVRGPV--NVELTILKLQHNNLT-DTAWLLN- 252

Query: 543 SLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYN 602
               LV +DL  N     +      +  ++ L +S N +   +         +       
Sbjct: 253 -YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTL------- 303

Query: 603 SSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPE 662
                                                       K +DLS N L   V  
Sbjct: 304 --------------------------------------------KVLDLSHNHLL-HVER 318

Query: 663 EIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGG-IPSSLSQVNRLSVM 721
                  L  L L  N++    T K+    +L  L LS N +    + +    V R +V 
Sbjct: 319 NQPQFDRLENLYLDHNSIV---TLKLSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVD 375

Query: 722 DLSHN 726
           D   +
Sbjct: 376 DADQH 380

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 69.2 bits (169), Expect = 3e-12
 Identities = 64/414 (15%), Positives = 121/414 (29%), Gaps = 39/414 (9%)

Query: 125 LRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKL 184
           +  LD S N+ +   +        +L  L L   + +      L N   L  + L YN+ 
Sbjct: 213 VEELDASHNSIN--VVR--GPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNE- 265

Query: 185 LRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRS 244
           L         ++  L  L +S+  L     + Q    IP+LK L L    L     + R+
Sbjct: 266 LEKIMYHPFVKMQRLERLYISNNRLVALNLYGQ---PIPTLKVLDLSHNHLL---HVERN 319

Query: 245 FSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDG-EIP 303
                    LE L L +N++            ++        +L+ LTLS N+ D   + 
Sbjct: 320 QPQF---DRLENLYLDHNSIV-----------TLK--LSTHHTLKNLTLSHNDWDCNSLR 363

Query: 304 KFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAGI 363
             F+N+ +        +       EH        K  P+  + LQ     SV++      
Sbjct: 364 ALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDK--PYLDRLLQYIALTSVVEKVQRAQ 421

Query: 364 SDS-------IPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEG 416
                          S    +   +    N+      N + +     +         L+G
Sbjct: 422 GRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQQLTNEQIQQEQLLQG 481

Query: 417 PSPSLPSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRI 476
               + +N     L K+  +     L                    +  +   +      
Sbjct: 482 LHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQARRTEADAKQKETED 541

Query: 477 LNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEEN 530
           L   N     ++ N      ++   +        +L +        R V+   +
Sbjct: 542 LEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNRNPDTRRVSHHHH 595

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 97.0 bits (242), Expect = 3e-22
 Identities = 46/223 (20%), Positives = 75/223 (33%), Gaps = 20/223 (8%)

Query: 118 ALLKLHYLRHLDLSFNNFSGSQIPMFIGS-LSKLEYLDLFAASFSGPIPPLLGNLSRLQY 176
              KL  L  L LS N  S            + L+YLDL        +      L +L++
Sbjct: 47  VFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEH 105

Query: 177 LSLGYNKLLRAGNLDWISQLFSLRYLDLSSCNLSK-STDWLQEVDKIPSLKTLYLEQCDL 235
           L   ++ L +         L +L YLD+S  +              + SL+ L +     
Sbjct: 106 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN---GLSSLEVLKMAGN-S 161

Query: 236 QLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSD 295
             +  +   F+ L    +L  L LS   L   + P  FN          + SL+ L +S 
Sbjct: 162 FQENFLPDIFTEL---RNLTFLDLSQCQLE-QLSPTAFN---------SLSSLQVLNMSH 208

Query: 296 NELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLK 338
           N         ++ +  L+ L    N +     +      S L 
Sbjct: 209 NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLA 251

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 93.9 bits (234), Expect = 4e-21
 Identities = 63/279 (22%), Positives = 95/279 (34%), Gaps = 45/279 (16%)

Query: 164 IPPLLGNLSRLQYLSLGYNKL--LRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDK 221
           +P  +   S    L L  NKL  L  G      +L  L  L LSS  LS      Q    
Sbjct: 22  VPTGI--PSSATRLELESNKLQSLPHGVF---DKLTQLTKLSLSSNGLSFKGCCSQSDFG 76

Query: 222 IPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDA 281
             SLK L L    +    T+  +F  L     LE L   ++NL       +F        
Sbjct: 77  TTSLKYLDLSFNGVI---TMSSNFLGL---EQLEHLDFQHSNLKQMSEFSVFL------- 123

Query: 282 PGPMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGP 341
              + +L  L +S           F  +  LE L + GNS +       F+    L    
Sbjct: 124 --SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT--- 178

Query: 342 HFPKWLQTQKHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFI 401
                         LD+S   +   +     ++   L  LN SHN            +  
Sbjct: 179 -------------FLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNS 224

Query: 402 LESPGIDISSNHLEGPSPS----LPSNAFYIDLSKNKFS 436
           L+   +D S NH+           PS+  +++L++N F+
Sbjct: 225 LQV--LDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 92.0 bits (229), Expect = 2e-20
 Identities = 56/270 (20%), Positives = 96/270 (35%), Gaps = 47/270 (17%)

Query: 125 LRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLF--AASFSGPIPPLLGNLSRLQYLSLGYN 182
              L+L  N        +F   L++L  L L     SF G         + L+YL L +N
Sbjct: 30  ATRLELESNKLQSLPHGVFDK-LTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88

Query: 183 KL--LRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVD---KIPSLKTLYLEQCDLQL 237
            +  + +        L  L +LD    NL +    + E      + +L  L +     ++
Sbjct: 89  GVITMSSN----FLGLEQLEHLDFQHSNLKQ----MSEFSVFLSLRNLIYLDISHTHTRV 140

Query: 238 QPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNE 297
               +  F+ L    SLE L ++ N+   +          +PD    + +L  L LS  +
Sbjct: 141 AF--NGIFNGL---SSLEVLKMAGNSFQENF---------LPDIFTELRNLTFLDLSQCQ 186

Query: 298 LDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLD 357
           L+   P  F ++  L+ L++  N+    +    +   + L+                VLD
Sbjct: 187 LEQLSPTAFNSLSSLQVLNMSHNNFF-SLDTFPYKCLNSLQ----------------VLD 229

Query: 358 ISSAGISDSIPDWFSDTSHKLADLNFSHNQ 387
            S   I  S           LA LN + N 
Sbjct: 230 YSLNHIMTSKKQELQHFPSSLAFLNLTQND 259

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 77.0 bits (190), Expect = 2e-15
 Identities = 51/228 (22%), Positives = 81/228 (35%), Gaps = 30/228 (13%)

Query: 83  HVKVLDLHGTGRVKVLDIQTRVMSGNASLR---------GTLNPALLKLHYLRHLDLSFN 133
            +  L L     +      ++   G  SL+          T++   L L  L HLD   +
Sbjct: 53  QLTKLSLSSN-GLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHS 111

Query: 134 NFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAGNLDWI 193
           N           SL  L YLD+           +   LS L+ L +  N        D  
Sbjct: 112 NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF 171

Query: 194 SQLFSLRYLDLSSCNLSK-STDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRS-FSHLNSS 251
           ++L +L +LDLS C L + S         + SL+ L +   +     ++    +  L   
Sbjct: 172 TELRNLTFLDLSQCQLEQLSPTAFN---SLSSLQVLNMSHNNFF---SLDTFPYKCL--- 222

Query: 252 PSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELD 299
            SL+ L  S N++  S    L +  S         SL  L L+ N+  
Sbjct: 223 NSLQVLDYSLNHIMTSKKQELQHFPS---------SLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 76.2 bits (188), Expect = 4e-15
 Identities = 55/292 (18%), Positives = 95/292 (32%), Gaps = 63/292 (21%)

Query: 198 SLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETL 257
           S   L+L S  L          DK+  L  L L    L  +    +S        SL+ L
Sbjct: 29  SATRLELESNKLQSLPH--GVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGT---TSLKYL 83

Query: 258 GLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIPK--FFQNMFKLEGL 315
            LS+N +            ++      +  L  L    + L  ++ +   F ++  L  L
Sbjct: 84  DLSFNGVI-----------TMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYL 131

Query: 316 SLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAGISDSIPDWFSDTS 375
            +       V     F+  S L+                VL ++     ++         
Sbjct: 132 DISHTHTR-VAFNGIFNGLSSLE----------------VLKMAGNSFQENFLPDIFTEL 174

Query: 376 HKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSLPSNAFYIDLSKNKF 435
             L  L+ S  Q+    P   +S+  L+   +++S N+      SL +  +   L+    
Sbjct: 175 RNLTFLDLSQCQLEQLSPTAFNSLSSLQV--LNMSHNNFF----SLDTFPYK-CLN---- 223

Query: 436 SGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQ--FNMLRILNLANNNFS 485
                        +L  LD S N +        LQ   + L  LNL  N+F+
Sbjct: 224 -------------SLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 72.4 bits (178), Expect = 8e-14
 Identities = 49/265 (18%), Positives = 82/265 (30%), Gaps = 45/265 (16%)

Query: 500 TLSLHHNNFSGELPSLLKNFTHLRVVALEENSIS-GNIPAWIGESLLNLVVLDLRSNRFY 558
            L L  N        +    T L  ++L  N +S     +       +L  LDL  N   
Sbjct: 32  RLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI 91

Query: 559 GKIPFQLCHLADIQILDLSLNNISGNIPKC-FNNFTAMTQER-SYNSSAITFSYAVPSRT 616
             +      L  ++ LD   +N+        F +   +     S+              T
Sbjct: 92  -TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT------------HT 138

Query: 617 TMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEI-MDLVGLIGLNL 675
            +    IF  +  L                  + ++ N        +I  +L  L  L+L
Sbjct: 139 RVAFNGIFNGLSSLEV----------------LKMAGNSFQENFLPDIFTELRNLTFLDL 182

Query: 676 SRNNLTGYITPKI-GQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGKIPT 734
           S+  L   ++P     L SL  L++S N F          +N L V+D S N++      
Sbjct: 183 SQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM-TSKK 240

Query: 735 G------TQLQSFNASVYDGNPELC 753
                  + L   N +    N   C
Sbjct: 241 QELQHFPSSLAFLNLT---QNDFAC 262

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 71.2 bits (175), Expect = 2e-13
 Identities = 47/199 (23%), Positives = 77/199 (38%), Gaps = 14/199 (7%)

Query: 407 IDISSNHLEGPSPSLPSNAF-------YIDLSKNKFSGPISFLCSFSG-QNLVYLDLSSN 458
           +++ SN L+    SLP   F        + LS N  S       S  G  +L YLDLS N
Sbjct: 33  LELESNKLQ----SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88

Query: 459 LLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSC-GYLQKMLTLSLHHNNFSGELPSLLK 517
            +   +   +L    L  L+  ++N       S    L+ ++ L + H +       +  
Sbjct: 89  GVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN 147

Query: 518 NFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLS 577
             + L V+ +  NS   N    I   L NL  LDL   +     P     L+ +Q+L++S
Sbjct: 148 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS 207

Query: 578 LNNISGNIPKCFNNFTAMT 596
            NN        +    ++ 
Sbjct: 208 HNNFFSLDTFPYKCLNSLQ 226

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 69.7 bits (171), Expect = 5e-13
 Identities = 58/279 (20%), Positives = 91/279 (32%), Gaps = 55/279 (19%)

Query: 287 SLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGV-ISEHFFSNFSYLKMGPHFPK 345
           S   L L  N+L       F  + +L  LSL  N L             + LK       
Sbjct: 29  SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLK------- 81

Query: 346 WLQTQKHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMT-----GRFPNYISSMF 400
                     LD+S  G+  ++   F     +L  L+F H+ +        F + + ++ 
Sbjct: 82  ---------YLDLSFNGVI-TMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLS-LRNLI 129

Query: 401 ILESPGIDISSNHLEGPSPSLPSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSN-L 459
            L     DIS  H         +  F   LS                 +L  L ++ N  
Sbjct: 130 YL-----DISHTHTR----VAFNGIFN-GLS-----------------SLEVLKMAGNSF 162

Query: 460 LSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNF 519
               LPD + +   L  L+L+        P +   L  +  L++ HNNF        K  
Sbjct: 163 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCL 222

Query: 520 THLRVVALEENSISGNIPAWIGESLL-NLVVLDLRSNRF 557
             L+V+    N I         +    +L  L+L  N F
Sbjct: 223 NSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 50.4 bits (121), Expect = 1e-06
 Identities = 29/124 (23%), Positives = 47/124 (37%), Gaps = 15/124 (12%)

Query: 105 MSGNASLRGTLNPALLKLHYLRHLDLSFNNFSGSQIP--MFIGSLSKLEYLDLFAASFSG 162
           M+GN+     L     +L  L  LDLS       Q+    F   LS L+ L++   +F  
Sbjct: 157 MAGNSFQENFLPDIFTELRNLTFLDLSQCQL--EQLSPTAFNS-LSSLQVLNMSHNNFFS 213

Query: 163 PIPPLLGNLSRLQYLSLGYNKL--LRAGNLDWISQLFSLRYLDLS------SCNLSKSTD 214
                   L+ LQ L    N +   +   L       SL +L+L+      +C       
Sbjct: 214 LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ--HFPSSLAFLNLTQNDFACTCEHQSFLQ 271

Query: 215 WLQE 218
           W+++
Sbjct: 272 WIKD 275

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 28/170 (16%), Positives = 54/170 (31%), Gaps = 29/170 (17%)

Query: 569 ADIQILDLSLNNISGNIPKCFNNFTAMTQER-SYNSSAITFSYAVPSRTTMLPVHIFFDI 627
           +    L+L  N +       F+  T +T+   S N                     F   
Sbjct: 28  SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNG------------------LSFKGC 69

Query: 628 VLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPK 687
              +  G           +K +DLS N +   +    + L  L  L+   +NL       
Sbjct: 70  CSQSDFG--------TTSLKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFS 120

Query: 688 I-GQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGKIPTGT 736
           +   L++L +LD+S            + ++ L V+ ++ N+         
Sbjct: 121 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 170

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 93.5 bits (233), Expect = 8e-21
 Identities = 61/327 (18%), Positives = 93/327 (28%), Gaps = 68/327 (20%)

Query: 125 LRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPP-LLGNLSRLQYLSLGYNK 183
              LDL  N+ S  +   F G L  L  L L     S  I       L +LQ L +  N 
Sbjct: 56  TTLLDLQNNDISELRKDDFKG-LQHLYALVLVNNKISK-IHEKAFSPLRKLQKLYISKNH 113

Query: 184 L--LRAGNLDWISQLF-SLRYLDLSSCNLSK-STDWLQEVDKIPSLKTLYLEQCDLQLQP 239
           L  +          L  SL  L +    + K           + ++  + +    L+   
Sbjct: 114 LVEIPPN-------LPSSLVELRIHDNRIRKVPKGVFS---GLRNMNCIEMGGNPLENSG 163

Query: 240 TIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELD 299
               +F  L     L  L +S   LT            IP       +L  L L  N++ 
Sbjct: 164 FEPGAFDGLK----LNYLRISEAKLT-----------GIP--KDLPETLNELHLDHNKIQ 206

Query: 300 GEIPKF-FQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDI 358
             I         KL  L L  N +  +I     S    L+                 L +
Sbjct: 207 -AIELEDLLRYSKLYRLGLGHNQIR-MIENGSLSFLPTLR----------------ELHL 248

Query: 359 SSAGISDSIPDWFSDTSHKLADLNFSHNQMT----GRFPNYISSMFILESPGIDISSNHL 414
            +  +S  +P    D    L  +    N +T      F      +      GI + +N +
Sbjct: 249 DNNKLS-RVPAGLPDL-KLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPV 306

Query: 415 EGPSPSLPSNAF-------YIDLSKNK 434
                 +    F        I     K
Sbjct: 307 P--YWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 87.8 bits (218), Expect = 7e-19
 Identities = 47/273 (17%), Positives = 90/273 (32%), Gaps = 41/273 (15%)

Query: 118 ALLKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPP-LLGNLSRLQY 176
           A   L  L+ L +S N+    +IP      S L  L +        +P  +   L  +  
Sbjct: 97  AFSPLRKLQKLYISKNHL--VEIPP--NLPSSLVELRIHDNRIRK-VPKGVFSGLRNMNC 151

Query: 177 LSLGYNKLLRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQ 236
           + +G N L  +G          L YL +S   L+     L       +L  L+L+   +Q
Sbjct: 152 IEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDL-----PETLNELHLDHNKIQ 206

Query: 237 LQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDN 296
                            L  LGL +N +   I     +          + +LR L L +N
Sbjct: 207 AIEL--EDLLRY---SKLYRLGLGHNQIR-MIENGSLS---------FLPTLRELHLDNN 251

Query: 297 ELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVL 356
           +L   +P    ++  L+ + L  N++   +  + F    +     +             +
Sbjct: 252 KLS-RVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAY----YNG------I 299

Query: 357 DISSAGISDSI--PDWFSDTSHKLADLNFSHNQ 387
            + +  +      P  F   +     + F + +
Sbjct: 300 SLFNNPVPYWEVQPATFRCVTD-RLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 78.1 bits (193), Expect = 1e-15
 Identities = 57/317 (17%), Positives = 98/317 (30%), Gaps = 49/317 (15%)

Query: 251 SPSLETLGLSYNNLTASIYPWLFNVSSIP-DAPGPMISLRTLTLSDNELDGEIPKFFQNM 309
           SP    L L  N+++            +  D    +  L  L L +N++     K F  +
Sbjct: 53  SPDTTLLDLQNNDIS-----------ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPL 101

Query: 310 FKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAGISDSIPD 369
            KL+ L +  N L   I  +  S+             L        L I    I      
Sbjct: 102 RKLQKLYISKNHLV-EIPPNLPSS-------------LVE------LRIHDNRIRKVPKG 141

Query: 370 WFSDTSHKLADLNFSHNQMTGRFPNYISSMFI-LESPGIDISSNHLEGPSPSLPSNAFYI 428
            FS   + +  +    N +           F  L+   + IS   L G    LP     +
Sbjct: 142 VFSGLRN-MNCIEMGGNPLENSGFE--PGAFDGLKLNYLRISEAKLTGIPKDLPETLNEL 198

Query: 429 DLSKNKFSGPISFLCSFSG-QNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGK 487
            L  NK    I           L  L L  N +             LR L+L NN  S +
Sbjct: 199 HLDHNKIQA-IELE-DLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-R 255

Query: 488 IPNSCGYLQKMLTLSLHHNNFSGELPS-------LLKNFTHLRVVALEENSIS-GNIPAW 539
           +P     L+ +  + LH NN + ++               +   ++L  N +    +   
Sbjct: 256 VPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPA 314

Query: 540 IGESLLNLVVLDLRSNR 556
               + + + +   + +
Sbjct: 315 TFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 77.0 bits (190), Expect = 3e-15
 Identities = 59/253 (23%), Positives = 99/253 (39%), Gaps = 16/253 (6%)

Query: 355 VLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHL 414
           +LD+ +  IS+   D F    H L  L   +N+++       S +  L+   + IS NHL
Sbjct: 58  LLDLQNNDISELRKDDFKGLQH-LYALVLVNNKISKIHEKAFSPLRKLQK--LYISKNHL 114

Query: 415 EGPSPSLPSNAFYIDLSKNKFSGPISFL--CSFSG-QNLVYLDLSSNLL-SGKLPDCWLQ 470
               P+LPS+   + +  N+    I  +    FSG +N+  +++  N L +         
Sbjct: 115 VEIPPNLPSSLVELRIHDNR----IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFD 170

Query: 471 FNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEEN 530
              L  L ++    +  IP      + +  L L HN         L  ++ L  + L  N
Sbjct: 171 GLKLNYLRISEAKLT-GIPK--DLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHN 227

Query: 531 SISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFN 590
            I   I       L  L  L L +N+   ++P  L  L  +Q++ L  NNI+      F 
Sbjct: 228 QIR-MIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFC 285

Query: 591 NFTAMTQERSYNS 603
                 +   YN 
Sbjct: 286 PVGFGVKRAYYNG 298

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 75.1 bits (185), Expect = 1e-14
 Identities = 63/316 (19%), Positives = 98/316 (31%), Gaps = 62/316 (19%)

Query: 287 SLRTLTLSDNELDGEIPKFFQNMFK-LEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPK 345
            LR +  SD  L   +P   + +      L L+ N +   + +  F    +L        
Sbjct: 34  HLRVVQCSDLGLK-AVP---KEISPDTTLLDLQNNDIS-ELRKDDFKGLQHLY------- 81

Query: 346 WLQTQKHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMT----GRFPNYISSMFI 401
                     L + +  IS      FS    KL  L  S N +         +       
Sbjct: 82  ---------ALVLVNNKISKIHEKAFSPL-RKLQKLYISKNHLVEIPPNLPSS------- 124

Query: 402 LESPGIDISSNHLEGPSPSLPSNAF-------YIDLSKNKFSGPISFLCSFSGQNLVYLD 454
           L    + I  N +      +P   F        I++  N          +F G  L YL 
Sbjct: 125 LVE--LRIHDNRIR----KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLR 178

Query: 455 LSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIP-NSCGYLQKMLTLSLHHNNFSGELP 513
           +S   L+  +P        L  L+L +N     I         K+  L L HN       
Sbjct: 179 ISEAKLT-GIPK--DLPETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIEN 234

Query: 514 SLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIP-------FQLC 566
             L     LR + L+ N +S  +PA +   L  L V+ L +N    K+            
Sbjct: 235 GSLSFLPTLRELHLDNNKLS-RVPAGL-PDLKLLQVVYLHTNNI-TKVGVNDFCPVGFGV 291

Query: 567 HLADIQILDLSLNNIS 582
             A    + L  N + 
Sbjct: 292 KRAYYNGISLFNNPVP 307

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 73.1 bits (180), Expect = 5e-14
 Identities = 56/294 (19%), Positives = 94/294 (31%), Gaps = 71/294 (24%)

Query: 449 NLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNF 508
           +   LDL +N +S    D +     L  L L NN  S     +   L+K+  L +  N+ 
Sbjct: 55  DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHL 114

Query: 509 SGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFY-GKIP---FQ 564
             E+P  L   + L  + + +N I   +P  +   L N+  +++  N           F 
Sbjct: 115 V-EIPPNL--PSSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFD 170

Query: 565 LCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIF 624
              L     L +S   +                                   T +P  + 
Sbjct: 171 GLKL---NYLRISEAKL-----------------------------------TGIPKDLP 192

Query: 625 FDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMD-LVGLIGLNLSRNNLTGY 683
             +  L                    L  NK+   +  E +     L  L L  N +   
Sbjct: 193 ETLNEL-------------------HLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIR-M 231

Query: 684 ITPKI-GQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGKIPTGT 736
           I       L +L  L L  N+ S  +P+ L  +  L V+ L  NN++ K+    
Sbjct: 232 IENGSLSFLPTLRELHLDNNKLSR-VPAGLPDLKLLQVVYLHTNNIT-KVGVND 283

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 61.2 bits (149), Expect = 5e-10
 Identities = 47/264 (17%), Positives = 80/264 (30%), Gaps = 63/264 (23%)

Query: 474 LRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSIS 533
           LR++  ++      +P           L L +N+ S       K   HL  + L  N IS
Sbjct: 35  LRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS 91

Query: 534 GNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFT 593
             I       L  L  L +  N    +IP  L   + +  L +  N I            
Sbjct: 92  -KIHEKAFSPLRKLQKLYISKNHLV-EIPPNL--PSSLVELRIHDNRI------------ 135

Query: 594 AMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSS 653
                                    +P  +F  +  +                  +++  
Sbjct: 136 -----------------------RKVPKGVFSGLRNMN----------------CIEMGG 156

Query: 654 NKLG-GEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSL 712
           N L          D + L  L +S   LT  I   +   ++L+ L L  N+        L
Sbjct: 157 NPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPKDL--PETLNELHLDHNKIQAIELEDL 213

Query: 713 SQVNRLSVMDLSHNNLSGKIPTGT 736
            + ++L  + L HN +   I  G+
Sbjct: 214 LRYSKLYRLGLGHNQIR-MIENGS 236

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 89.3 bits (222), Expect = 1e-19
 Identities = 49/216 (22%), Positives = 78/216 (36%), Gaps = 23/216 (10%)

Query: 125 LRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKL 184
            + + L  N  S      F      L  L L +   +         L+ L+ L L  N  
Sbjct: 34  SQRIFLHGNRISHVPAASFRA-CRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 185 LRAGNLDWISQLFSLRYLDLSSCNLSK-STDWLQEVDKIPSLKTLYLEQCDLQLQPTIHR 243
           LR+ +      L  L  L L  C L +           + +L+ LYL+   LQ  P    
Sbjct: 93  LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLF---RGLAALQYLYLQDNALQALPD--D 147

Query: 244 SFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPD-APGPMISLRTLTLSDNELDGEI 302
           +F  L    +L  L L  N ++           S+P+ A   + SL  L L  N +    
Sbjct: 148 TFRDL---GNLTHLFLHGNRIS-----------SVPERAFRGLHSLDRLLLHQNRVAHVH 193

Query: 303 PKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLK 338
           P  F+++ +L  L L  N+L   +     +    L+
Sbjct: 194 PHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQ 228

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 83.1 bits (206), Expect = 1e-17
 Identities = 52/209 (24%), Positives = 72/209 (34%), Gaps = 26/209 (12%)

Query: 118 ALLKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPP-LLGNLSRLQY 176
           +      L  L L  N  +      F G L+ LE LDL   +    + P     L RL  
Sbjct: 51  SFRACRNLTILWLHSNVLARIDAAAFTG-LALLEQLDLSDNAQLRSVDPATFHGLGRLHT 109

Query: 177 LSLGYNKL--LRAGNLDWISQLFSLRYLDLSSCNLSK-STDWLQEVDKIPSLKTLYLEQC 233
           L L    L  L  G       L +L+YL L    L     D       + +L  L+L   
Sbjct: 110 LHLDRCGLQELGPGLFR---GLAALQYLYLQDNALQALPDDTF---RDLGNLTHLFLHGN 163

Query: 234 DLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTL 293
            +   P   R+F  L    SL+ L L  N +   ++P  F           +  L TL L
Sbjct: 164 RISSVP--ERAFRGL---HSLDRLLLHQNRVA-HVHPHAFR---------DLGRLMTLYL 208

Query: 294 SDNELDGEIPKFFQNMFKLEGLSLRGNSL 322
             N L     +    +  L+ L L  N  
Sbjct: 209 FANNLSALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 61.5 bits (150), Expect = 2e-10
 Identities = 49/260 (18%), Positives = 78/260 (30%), Gaps = 61/260 (23%)

Query: 474 LRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSIS 533
            + + L  N  S     S    + +  L LH N  +    +       L  + L +N+  
Sbjct: 34  SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93

Query: 534 GNIPAWIGESLLNLVVLDLRSNRFYGKIP---FQLCHLADIQILDLSLNNISGNIPKCFN 590
            ++       L  L  L L       ++    F+   LA +Q L L  N +         
Sbjct: 94  RSVDPATFHGLGRLHTLHLDRCGL-QELGPGLFR--GLAALQYLYLQDNAL--------- 141

Query: 591 NFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVD 650
                                       LP   F D+  LT                 + 
Sbjct: 142 --------------------------QALPDDTFRDLGNLTH----------------LF 159

Query: 651 LSSNKLGGEVPEEI-MDLVGLIGLNLSRNNLTGYITPKI-GQLQSLDFLDLSRNQFSGGI 708
           L  N++   VPE     L  L  L L +N +  ++ P     L  L  L L  N  S   
Sbjct: 160 LHGNRI-SSVPERAFRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYLFANNLSALP 217

Query: 709 PSSLSQVNRLSVMDLSHNNL 728
             +L+ +  L  + L+ N  
Sbjct: 218 TEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 60.4 bits (147), Expect = 6e-10
 Identities = 51/271 (18%), Positives = 75/271 (27%), Gaps = 70/271 (25%)

Query: 287 SLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKW 346
           + + + L  N +       F+    L  L L  N L   I    F+  + L+        
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLE-------- 83

Query: 347 LQTQKHFSVLDISSAGISDSIP-DWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESP 405
                    LD+S      S+    F     +L  L+     +                 
Sbjct: 84  --------QLDLSDNAQLRSVDPATFHGLG-RLHTLHLDRCGLQ---------------- 118

Query: 406 GIDISSNHLEGPSPSLPSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLP 465
                          L    F   L+                  L YL L  N L   LP
Sbjct: 119 --------------ELGPGLFR-GLA-----------------ALQYLYLQDNALQ-ALP 145

Query: 466 DCWLQF-NMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRV 524
           D   +    L  L L  N  S     +   L  +  L LH N  +   P   ++   L  
Sbjct: 146 DDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMT 205

Query: 525 VALEENSISGNIPAWIGESLLNLVVLDLRSN 555
           + L  N++S  +P      L  L  L L  N
Sbjct: 206 LYLFANNLS-ALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 60.0 bits (146), Expect = 7e-10
 Identities = 54/264 (20%), Positives = 85/264 (32%), Gaps = 70/264 (26%)

Query: 500 TLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYG 559
            + LH N  S    +  +   +L ++ L  N ++  I A     L  L  LDL  N    
Sbjct: 36  RIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDNAQLR 94

Query: 560 KIP---FQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRT 616
            +    F    L  +  L L    +                                   
Sbjct: 95  SVDPATFH--GLGRLHTLHLDRCGL----------------------------------- 117

Query: 617 TMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEI-MDLVGLIGLNL 675
             L   +F  +  L +                + L  N L   +P++   DL  L  L L
Sbjct: 118 QELGPGLFRGLAALQY----------------LYLQDNALQ-ALPDDTFRDLGNLTHLFL 160

Query: 676 SRNNLTGYITPKI-GQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGKIPT 734
             N ++  +  +    L SLD L L +N+ +   P +   + RL  + L  NNLS  +PT
Sbjct: 161 HGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS-ALPT 218

Query: 735 G-----TQLQSFNASVYDGNPELC 753
                   LQ    +    NP +C
Sbjct: 219 EALAPLRALQYLRLN---DNPWVC 239

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 58.1 bits (141), Expect = 3e-09
 Identities = 50/282 (17%), Positives = 82/282 (29%), Gaps = 79/282 (28%)

Query: 251 SPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIPKFFQNMF 310
             + + + L  N ++  +    F             +L  L L  N L       F  + 
Sbjct: 31  PAASQRIFLHGNRIS-HVPAASFR---------ACRNLTILWLHSNVLARIDAAAFTGLA 80

Query: 311 KLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAGISDSIP-D 369
            LE L L  N+    +    F     L                  L +   G+   +   
Sbjct: 81  LLEQLDLSDNAQLRSVDPATFHGLGRLH----------------TLHLDRCGLQ-ELGPG 123

Query: 370 WFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSLPSNAFYID 429
            F   +  L  L    N +                               +LP + F  D
Sbjct: 124 LFRGLA-ALQYLYLQDNALQ------------------------------ALPDDTFR-D 151

Query: 430 LSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQ-FNMLRILNLANNNFSGKI 488
           L                  NL +L L  N +S  +P+   +  + L  L L  N  +   
Sbjct: 152 LG-----------------NLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVH 193

Query: 489 PNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEEN 530
           P++   L +++TL L  NN S      L     L+ + L +N
Sbjct: 194 PHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 48.1 bits (115), Expect = 6e-06
 Identities = 32/110 (29%), Positives = 40/110 (36%), Gaps = 14/110 (12%)

Query: 118 ALLKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPP-LLGNLSRLQY 176
               L  L HL L  N  S      F G L  L+ L L     +  + P    +L RL  
Sbjct: 148 TFRDLGNLTHLFLHGNRISSVPERAFRG-LHSLDRLLLHQNRVAH-VHPHAFRDLGRLMT 205

Query: 177 LSLGYNKL--LRAGNLDWISQLFSLRYLDLS------SCNLSKSTDWLQE 218
           L L  N L  L    L     L +L+YL L+       C       WLQ+
Sbjct: 206 LYLFANNLSALPTEALA---PLRALQYLRLNDNPWVCDCRARPLWAWLQK 252

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 46.1 bits (110), Expect = 2e-05
 Identities = 36/203 (17%), Positives = 58/203 (28%), Gaps = 50/203 (24%)

Query: 569 ADIQILDLSLNNISGNIPKCFNNFTAMTQER-SYNSSAITFSYAVPSRTTMLPVHIFFDI 627
           A  Q + L  N IS      F     +T      N                +    F  +
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSN------------VLARIDAAAFTGL 79

Query: 628 VLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEI-MDLVGLIGLNLSRNNLTGYITP 686
            LL                + +DLS N     V       L  L  L+L R  L   + P
Sbjct: 80  ALL----------------EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGP 122

Query: 687 KI-GQLQSLDFLDLSRNQFSGGIPS-SLSQVNRLSVMDLSHNNLSGKIPTGT-------- 736
            +   L +L +L L  N     +P  +   +  L+ + L  N +S  +P           
Sbjct: 123 GLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLD 180

Query: 737 -------QLQSFNASVYDGNPEL 752
                  ++   +   +     L
Sbjct: 181 RLLLHQNRVAHVHPHAFRDLGRL 203

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 45.0 bits (107), Expect = 6e-05
 Identities = 16/89 (17%), Positives = 29/89 (32%), Gaps = 3/89 (3%)

Query: 648 SVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGG 707
           +       L   VP  I        + L  N ++          ++L  L L  N  +  
Sbjct: 15  TTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI 71

Query: 708 IPSSLSQVNRLSVMDLSHNNLSGKIPTGT 736
             ++ + +  L  +DLS N     +   T
Sbjct: 72  DAAAFTGLALLEQLDLSDNAQLRSVDPAT 100

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 90.3 bits (224), Expect = 6e-19
 Identities = 88/450 (19%), Positives = 160/450 (35%), Gaps = 64/450 (14%)

Query: 125 LRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKL 184
           LR L LS N        +F+     LEYLD+        I      ++ L++L L +N  
Sbjct: 78  LRVLRLSHNRIRSLDFHVFL-FNQDLEYLDVSHNRLQN-ISC--CPMASLRHLDLSFNDF 133

Query: 185 LRAGNLDWISQLFSLRYLDLSSCNLSKST----DWLQEVDKIPSLKTLYLEQCDLQLQPT 240
                      L  L +L LS+    +        L     +  L + +++  + +    
Sbjct: 134 DVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQI 193

Query: 241 IHRSFSHLNSSP-------------SLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMIS 287
            + +  HL   P             +L  L LS   L          + +         +
Sbjct: 194 PNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDE---NCQRLMTFLSELTRGPT 250

Query: 288 LRTLTLSDNEL-DGEIPKFFQNMF--KLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFP 344
           L  +TL   E       K FQ  +   +E L++   ++   I       F+Y +      
Sbjct: 251 LLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERI---DREEFTYSETALKSL 307

Query: 345 KWLQ------------TQKHFSVLDISSAGISDS--IPDWFSDTSHKLADLNFSHNQMTG 390
                               F+ ++I    ISD+  I      +      LNF+ N  T 
Sbjct: 308 MIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTD 367

Query: 391 RFPNYISSMFILESPGIDISSNHLEGPSPSLPSNAF---------YIDLSKNKF-SGPIS 440
                 S++  L++  + +  N L+    +    A           +D+S N   S    
Sbjct: 368 SVFQGCSTLKRLQT--LILQRNGLK----NFFKVALMTKNMSSLETLDVSLNSLNSHAYD 421

Query: 441 FLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLT 500
             C+++ ++++ L+LSSN+L+G +  C L    +++L+L NN     IP    +LQ +  
Sbjct: 422 RTCAWA-ESILVLNLSSNMLTGSVFRC-LPPK-VKVLDLHNNRIM-SIPKDVTHLQALQE 477

Query: 501 LSLHHNNFSGELPSLLKNFTHLRVVALEEN 530
           L++  N        +    T L+ + L +N
Sbjct: 478 LNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 89.5 bits (222), Expect = 1e-18
 Identities = 94/516 (18%), Positives = 170/516 (32%), Gaps = 68/516 (13%)

Query: 198 SLRYLDLSSCNLSKSTDWLQE--VDKIPSLKTLYLEQCDLQLQPTIHRS-FSHLNSSPSL 254
             + L LS  ++S+    L+   +  +  L+ L L    ++   ++    F        L
Sbjct: 53  RTKALSLSQNSISE----LRMPDISFLSELRVLRLSHNRIR---SLDFHVFLFN---QDL 102

Query: 255 ETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIP--KFFQNMFKL 312
           E L +S+N L            +I     PM SLR L LS N+ D  +P  K F N+ KL
Sbjct: 103 EYLDVSHNRLQ-----------NIS--CCPMASLRHLDLSFNDFD-VLPVCKEFGNLTKL 148

Query: 313 EGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAGISDSIPDWFS 372
             L L       +         ++L +                LD+ S  I     +   
Sbjct: 149 TFLGLSAAKFRQL----DLLPVAHLHLSCIL------------LDLVSYHIKGGETESLQ 192

Query: 373 DTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSLPSNAFYIDLSK 432
             +  +  L F  N +     +   +M +     + +S+  L   +              
Sbjct: 193 IPNTTVLHLVFHPNSL----FSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRG 248

Query: 433 NKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSC 492
                    L + + Q++      S  L        +++  +  L +       +   S 
Sbjct: 249 PT-------LLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSE 301

Query: 493 GYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDL 552
             L+ ++   + +  F     +L   F  + +  L  +     I      S  +   L+ 
Sbjct: 302 TALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTP-FIHMVCPPSPSSFTFLNF 360

Query: 553 RSNRFYGKIPFQLCH-LADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYA 611
             N F     FQ C  L  +Q L L  N +  N  K       M+   + + S  + +  
Sbjct: 361 TQNVF-TDSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSLETLDVSLNSLNSH 418

Query: 612 VPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSV---DLSSNKLGGEVPEEIMDLV 668
              RT      I      L    +         L   V   DL +N++   +P+++  L 
Sbjct: 419 AYDRTCAWAESILV----LNLSSNMLTGSVFRCLPPKVKVLDLHNNRIM-SIPKDVTHLQ 473

Query: 669 GLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQF 704
            L  LN++ N L         +L SL ++ L  N +
Sbjct: 474 ALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 68.7 bits (168), Expect = 4e-12
 Identities = 84/514 (16%), Positives = 160/514 (31%), Gaps = 109/514 (21%)

Query: 252 PSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIPKFFQNMFK 311
           P  + L LS N+++  +     +          +  LR L LS N +       F     
Sbjct: 52  PRTKALSLSQNSIS-ELRMPDIS---------FLSELRVLRLSHNRIRSLDFHVFLFNQD 101

Query: 312 LEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAGISDSIPDW- 370
           LE L +  N L+  IS    ++  +L +   F  +                  D +P   
Sbjct: 102 LEYLDVSHNRLQN-ISCCPMASLRHLDL--SFNDF------------------DVLPVCK 140

Query: 371 -FSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSLPSNAFYID 429
            F + + KL  L  S  +               +   + ++  HL             I 
Sbjct: 141 EFGNLT-KLTFLGLSAAK-------------FRQLDLLPVAHLHL-----------SCIL 175

Query: 430 LSKNKFSGPISFLCSFSGQNLVYLDLSSN---LLSGKLPD--CWLQFNMLRILNLANNNF 484
           L    +        S    N   L L  +   L S ++      L    L  + L + N 
Sbjct: 176 LDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENC 235

Query: 485 SGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGN--------- 535
              +       +    L++   +        +K F       +E  +I            
Sbjct: 236 QRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDRE 295

Query: 536 IPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAM 595
              +   +L +L++  +++  F           A++ I  LS+++       C  + ++ 
Sbjct: 296 EFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSF 355

Query: 596 TQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNK 655
           T         + F+    +  T         +  L                  + L  N 
Sbjct: 356 TF--------LNFTQ---NVFTDSVFQGCSTLKRLQT----------------LILQRNG 388

Query: 656 LG--GEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQL-QSLDFLDLSRNQFSGGIPSSL 712
           L    +V     ++  L  L++S N+L  +   +     +S+  L+LS N  +G +   L
Sbjct: 389 LKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL 448

Query: 713 SQVNRLSVMDLSHNNLSGKIPTG----TQLQSFN 742
               ++ V+DL +N +   IP        LQ  N
Sbjct: 449 PP--KVKVLDLHNNRIM-SIPKDVTHLQALQELN 479

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 89.4 bits (222), Expect = 6e-19
 Identities = 53/230 (23%), Positives = 97/230 (42%), Gaps = 39/230 (16%)

Query: 118 ALLKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPP-LLGNLSRLQY 176
           +   L +L  L LS N+    +I  F G L+ L  L+LF    +  IP      LS+L+ 
Sbjct: 83  SFKHLRHLEILQLSRNHIRTIEIGAFNG-LANLNTLELFDNRLTT-IPNGAFVYLSKLKE 140

Query: 177 LSLGYNKL--LRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEV-----DKIPSLKTLY 229
           L L  N +  + +      +++ SLR LDL           L  +     + + +L+ L 
Sbjct: 141 LWLRNNPIESIPSYAF---NRIPSLRRLDLGELK------RLSYISEGAFEGLSNLRYLN 191

Query: 230 LEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIP-DAPGPMISL 288
           L  C+L+  P      + L     L+ L LS N+L+           +I   +   ++ L
Sbjct: 192 LAMCNLREIPN----LTPL---IKLDELDLSGNHLS-----------AIRPGSFQGLMHL 233

Query: 289 RTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLK 338
           + L +  +++       F N+  L  ++L  N+L  ++    F+   +L+
Sbjct: 234 QKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLE 282

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 72.1 bits (177), Expect = 2e-13
 Identities = 49/257 (19%), Positives = 92/257 (35%), Gaps = 28/257 (10%)

Query: 352 HFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISS 411
            FS +      +   +PD  S        LN   NQ+     N    +  LE   + +S 
Sbjct: 44  QFSKVICVRKNLR-EVPDGISTN---TRLLNLHENQIQIIKVNSFKHLRHLEI--LQLSR 97

Query: 412 NHLEGPSPSLPSNAF-------YIDLSKNKFSGPISFL--CSFSG-QNLVYLDLSSNLLS 461
           NH+     ++   AF        ++L  N+    ++ +   +F     L  L L +N + 
Sbjct: 98  NHIR----TIEIGAFNGLANLNTLELFDNR----LTTIPNGAFVYLSKLKELWLRNNPIE 149

Query: 462 GKLPDCWLQFNMLRILNLANNNFSGKIPNSC-GYLQKMLTLSLHHNNFSGELPSLLKNFT 520
                 + +   LR L+L        I       L  +  L+L   N   E+P+ L    
Sbjct: 150 SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN-LTPLI 207

Query: 521 HLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNN 580
            L  + L  N +S  I     + L++L  L +  ++          +L  +  ++L+ NN
Sbjct: 208 KLDELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNN 266

Query: 581 ISGNIPKCFNNFTAMTQ 597
           ++      F     + +
Sbjct: 267 LTLLPHDLFTPLHHLER 283

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 70.9 bits (174), Expect = 6e-13
 Identities = 63/288 (21%), Positives = 105/288 (36%), Gaps = 62/288 (21%)

Query: 223 PSLKTLYLEQCDLQ-LQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDA 281
            + + L L +  +Q ++     SF HL     LE L LS N++  +I    FN       
Sbjct: 64  TNTRLLNLHENQIQIIKV---NSFKHL---RHLEILQLSRNHIR-TIEIGAFN------- 109

Query: 282 PGPMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGP 341
              + +L TL L DN L       F  + KL+ L LR N +E  I  + F+    L+   
Sbjct: 110 --GLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLR--- 163

Query: 342 HFPKWLQTQKHFSVLDISSAGISDSIP-DWFSDTSHKLADLNFSHNQMTGRFPNYISSMF 400
                         LD+        I    F   S  L  LN +   +       ++ + 
Sbjct: 164 -------------RLDLGELKRLSYISEGAFEGLS-NLRYLNLAMCNLR--EIPNLTPLI 207

Query: 401 ILESPGIDISSNHLEGPSPSLPSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLL 460
            L+   +D+S NHL     ++   +F   L                  +L  L +  + +
Sbjct: 208 KLDE--LDLSGNHLS----AIRPGSFQ-GLM-----------------HLQKLWMIQSQI 243

Query: 461 SGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNF 508
                + +     L  +NLA+NN +    +    L  +  + LHHN +
Sbjct: 244 QVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 70.2 bits (172), Expect = 9e-13
 Identities = 55/290 (18%), Positives = 83/290 (28%), Gaps = 69/290 (23%)

Query: 251 SPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIPKFFQNMF 310
           S +   L L  N +   I    F           +  L  L LS N +       F  + 
Sbjct: 63  STNTRLLNLHENQIQ-IIKVNSFK---------HLRHLEILQLSRNHIRTIEIGAFNGLA 112

Query: 311 KLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAGISDSIPDW 370
            L  L L  N L   I    F   S LK                 L + +  I       
Sbjct: 113 NLNTLELFDNRLT-TIPNGAFVYLSKLK----------------ELWLRNNPIESIPSYA 155

Query: 371 FSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSLPSNAF---- 426
           F+     L  L+                               L      +   AF    
Sbjct: 156 FNRIP-SLRRLDLGEL-------------------------KRLS----YISEGAFEGLS 185

Query: 427 ---YIDLSKNKFSGPISFLCSFSG-QNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANN 482
              Y++L+       +  + + +    L  LDLS N LS   P  +     L+ L +  +
Sbjct: 186 NLRYLNLAMCN----LREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS 241

Query: 483 NFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSI 532
                  N+   LQ ++ ++L HNN +     L     HL  + L  N  
Sbjct: 242 QIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 67.9 bits (166), Expect = 5e-12
 Identities = 58/287 (20%), Positives = 99/287 (34%), Gaps = 66/287 (22%)

Query: 474 LRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSIS 533
            R+LNL  N       NS  +L+ +  L L  N+             +L  + L +N ++
Sbjct: 66  TRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT 125

Query: 534 GNIPAWIGESLLNLVVLDLRSNRFYGKIP-FQLCHLADIQILDLSLNNISGNIPKCFNNF 592
             IP      L  L  L LR+N     IP +    +  ++ LDL                
Sbjct: 126 -TIPNGAFVYLSKLKELWLRNNPI-ESIPSYAFNRIPSLRRLDLGELK------------ 171

Query: 593 TAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLS 652
                                 R + +    F                  L  ++ ++L+
Sbjct: 172 ----------------------RLSYISEGAFEG----------------LSNLRYLNLA 193

Query: 653 SNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKI-GQLQSLDFLDLSRNQFSGGIPSS 711
              L  E+P  +  L+ L  L+LS N+L+  I P     L  L  L + ++Q      ++
Sbjct: 194 MCNL-REIP-NLTPLIKLDELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQVIERNA 250

Query: 712 LSQVNRLSVMDLSHNNLSGKIPTGT-----QLQSFNASVYDGNPELC 753
              +  L  ++L+HNNL+  +P         L+  +      NP  C
Sbjct: 251 FDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHL---HHNPWNC 293

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 44.7 bits (106), Expect = 9e-05
 Identities = 25/91 (27%), Positives = 36/91 (39%), Gaps = 6/91 (6%)

Query: 647 KSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKI-GQLQSLDFLDLSRNQFS 705
             V      L  EVP+ I        LNL  N +   I       L+ L+ L LSRN   
Sbjct: 46  SKVICVRKNLR-EVPDGI--STNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIR 101

Query: 706 GGIPSSLSQVNRLSVMDLSHNNLSGKIPTGT 736
                + + +  L+ ++L  N L+  IP G 
Sbjct: 102 TIEIGAFNGLANLNTLELFDNRLT-TIPNGA 131

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 89.4 bits (222), Expect = 7e-19
 Identities = 52/230 (22%), Positives = 90/230 (39%), Gaps = 39/230 (16%)

Query: 118 ALLKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPP-LLGNLSRLQY 176
               LH+L  L L  N+    ++  F G L+ L  L+LF    +  IP      LS+L+ 
Sbjct: 94  TFRHLHHLEVLQLGRNSIRQIEVGAFNG-LASLNTLELFDNWLTV-IPSGAFEYLSKLRE 151

Query: 177 LSLGYNKL--LRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVD-----KIPSLKTLY 229
           L L  N +  + +      +++ SL  LDL           L+ +       + +LK L 
Sbjct: 152 LWLRNNPIESIPSYAF---NRVPSLMRLDLGELK------KLEYISEGAFEGLFNLKYLN 202

Query: 230 LEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIP-DAPGPMISL 288
           L  C+++  P      + L     LE L +S N+              I   +   + SL
Sbjct: 203 LGMCNIKDMPN----LTPL---VGLEELEMSGNHFP-----------EIRPGSFHGLSSL 244

Query: 289 RTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLK 338
           + L + ++++       F  +  L  L+L  N+L   +    F+   YL 
Sbjct: 245 KKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLV 293

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 71.7 bits (176), Expect = 3e-13
 Identities = 66/288 (22%), Positives = 106/288 (36%), Gaps = 62/288 (21%)

Query: 223 PSLKTLYLEQCDLQ-LQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDA 281
            + + L L + ++Q +Q     +F HL     LE L L  N++   I    FN       
Sbjct: 75  SNTRYLNLMENNIQMIQA---DTFRHL---HHLEVLQLGRNSIR-QIEVGAFN------- 120

Query: 282 PGPMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGP 341
              + SL TL L DN L       F+ + KL  L LR N +E  I  + F+    L    
Sbjct: 121 --GLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLM--- 174

Query: 342 HFPKWLQTQKHFSVLDISSAGISDSIP-DWFSDTSHKLADLNFSHNQMTGRFPNYISSMF 400
                         LD+      + I    F      L  LN     +       ++ + 
Sbjct: 175 -------------RLDLGELKKLEYISEGAFEGLF-NLKYLNLGMCNIK--DMPNLTPLV 218

Query: 401 ILESPGIDISSNHLEGPSPSLPSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLL 460
            LE   +++S NH       +   +F+  LS                 +L  L + ++ +
Sbjct: 219 GLEE--LEMSGNHFP----EIRPGSFH-GLS-----------------SLKKLWVMNSQV 254

Query: 461 SGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNF 508
           S    + +     L  LNLA+NN S    +    L+ ++ L LHHN +
Sbjct: 255 SLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 70.5 bits (173), Expect = 7e-13
 Identities = 57/305 (18%), Positives = 86/305 (28%), Gaps = 78/305 (25%)

Query: 251 SPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIPKFFQNMF 310
             +   L L  NN+   I    F           +  L  L L  N +       F  + 
Sbjct: 74  PSNTRYLNLMENNIQ-MIQADTFR---------HLHHLEVLQLGRNSIRQIEVGAFNGLA 123

Query: 311 KLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAGISDSIPDW 370
            L  L L  N L  VI    F   S L+                 L + +  I       
Sbjct: 124 SLNTLELFDNWLT-VIPSGAFEYLSKLR----------------ELWLRNNPIESIPSYA 166

Query: 371 FSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSLPSNAFYIDL 430
           F+     L  L+                               LE     +   AF   L
Sbjct: 167 FNRVP-SLMRLDLGEL-------------------------KKLE----YISEGAFE-GL 195

Query: 431 SKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPN 490
                             NL YL+L    +   +P+       L  L ++ N+F    P 
Sbjct: 196 F-----------------NLKYLNLGMCNIK-DMPN-LTPLVGLEELEMSGNHFPEIRPG 236

Query: 491 SCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVL 550
           S   L  +  L + ++  S    +       L  + L  N++S ++P  +   L  LV L
Sbjct: 237 SFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVEL 295

Query: 551 DLRSN 555
            L  N
Sbjct: 296 HLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 64.8 bits (158), Expect = 5e-11
 Identities = 49/238 (20%), Positives = 83/238 (34%), Gaps = 23/238 (9%)

Query: 500 TLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYG 559
            L+L  NN         ++  HL V+ L  NSI   I       L +L  L+L  N    
Sbjct: 79  YLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNWL-T 136

Query: 560 KIPFQ-LCHLADIQILDLSLNNISGNIPK-CFNNFTAMTQERSYNSSAITFSYAVPSRTT 617
            IP     +L+ ++ L L  N I  +IP   FN   ++ +        + +         
Sbjct: 137 VIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEY--------- 186

Query: 618 MLPVHIFFDIVLLTW------KGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLI 671
            +    F  +  L +         +      L  ++ +++S N      P     L  L 
Sbjct: 187 -ISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLK 245

Query: 672 GLNLSRNNLTGYITPK-IGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNL 728
            L +  + ++  I       L SL  L+L+ N  S       + +  L  + L HN  
Sbjct: 246 KLWVMNSQVS-LIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 90.0 bits (223), Expect = 9e-19
 Identities = 55/355 (15%), Positives = 105/355 (29%), Gaps = 78/355 (21%)

Query: 381 LNFSHNQMTGRFPNYISSMFILESPGIDISS--NHLEGPSPSLPSNAFYIDLSKNKFSGP 438
            N  +N ++G + +Y S+    E   +   +    +      L +    + L++      
Sbjct: 15  QNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLN---- 70

Query: 439 ISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKM 498
           +S L       +  L+++ N L   LP+       L  L+  +N  S  +P     L+  
Sbjct: 71  LSSLPDNLPPQITVLEITQNALI-SLPE---LPASLEYLDACDNRLS-TLPELPASLKH- 124

Query: 499 LTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFY 558
             L + +N  +  LP L     ++     + N ++  +P        +L VL +R+N+  
Sbjct: 125 --LDVDNNQLT-MLPELPALLEYIN---ADNNQLT-MLPELPT----SLEVLSVRNNQL- 172

Query: 559 GKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTM 618
             +P     L   + LD+S N +                                     
Sbjct: 173 TFLPELPESL---EALDVSTNLL-----------------------------------ES 194

Query: 619 LPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRN 678
           LP     +                           N++   +PE I+ L     + L  N
Sbjct: 195 LPAVPVRNHHSEE-------------TEIFFRCRENRIT-HIPENILSLDPTCTIILEDN 240

Query: 679 NLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGKIP 733
            L+  I   + Q  +       R  FS              + D           
Sbjct: 241 PLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQ--QNTLHRPLADAVTAWFPENKQ 293

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 81.2 bits (200), Expect = 5e-16
 Identities = 51/331 (15%), Positives = 102/331 (30%), Gaps = 62/331 (18%)

Query: 439 ISFLCSFSGQNLVYLDLSSNLLSG---KLPDCWLQFNMLRILNLANNNFSGKIPNSCGYL 495
           +S +   +    +  +   N +SG        W ++    +     N     +      +
Sbjct: 1   MSIMLPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKEC--LI 58

Query: 496 QKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSN 555
            +   L L+  N S  LP  L     + V+ + +N++  ++P        +L  LD   N
Sbjct: 59  NQFSELQLNRLNLS-SLPDNL--PPQITVLEITQNALI-SLPELPA----SLEYLDACDN 110

Query: 556 RFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSR 615
           R    +P     L   + LD+  N ++  +P+              N            +
Sbjct: 111 RL-STLPELPASL---KHLDVDNNQLT-MLPELPALLE--YINADNN------------Q 151

Query: 616 TTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNL 675
            TMLP                         ++ + + +N+L   +PE    L  L   ++
Sbjct: 152 LTMLP--------------------ELPTSLEVLSVRNNQLT-FLPELPESLEAL---DV 187

Query: 676 SRNNLTGYITPKIGQLQSL----DFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGK 731
           S N L   +     +         F     N+ +  IP ++  ++    + L  N LS +
Sbjct: 188 STNLLES-LPAVPVRNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLSSR 245

Query: 732 IPTGTQLQSFNASVYDGNPELCGLPLPSKCW 762
           I      Q+     +                
Sbjct: 246 IRESLSQQTAQPDYHGPRIYFSMSDGQQNTL 276

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 75.8 bits (186), Expect = 2e-14
 Identities = 50/313 (15%), Positives = 101/313 (32%), Gaps = 58/313 (18%)

Query: 249 NSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIPKFFQN 308
           N++ SL      YN ++ +        +    A            + NE    + +   N
Sbjct: 8   NNNFSLSQN-SFYNTISGTY-------ADYFSAWDKWEKQALPGENRNEAVSLLKECLIN 59

Query: 309 MFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAGISDSIP 368
             +   L L   +L   + ++                 +       VL+I+   +  S+P
Sbjct: 60  --QFSELQLNRLNLS-SLPDNLPPQ-------------IT------VLEITQNALI-SLP 96

Query: 369 DWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSLPSNAFYI 428
           +  +     L  L+   N+++   P   +S+  L     D+ +N L    P LP+   YI
Sbjct: 97  ELPAS----LEYLDACDNRLS-TLPELPASLKHL-----DVDNNQLTM-LPELPALLEYI 145

Query: 429 DLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKI 488
           +   N+    ++ L      +L  L + +N L+  LP+       L  L+++ N     +
Sbjct: 146 NADNNQ----LTMLPE-LPTSLEVLSVRNNQLT-FLPE---LPESLEALDVSTNLLES-L 195

Query: 489 PNSCGYLQKMLT----LSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESL 544
           P                    N  +  +P  + +      + LE+N +S +         
Sbjct: 196 PAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLS-SRIRESLSQQ 253

Query: 545 LNLVVLDLRSNRF 557
                       F
Sbjct: 254 TAQPDYHGPRIYF 266

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 75.0 bits (184), Expect = 4e-14
 Identities = 56/309 (18%), Positives = 97/309 (31%), Gaps = 61/309 (19%)

Query: 236 QLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSD 295
            +  T    FS  +        G + N   + +   L N                L L+ 
Sbjct: 21  TISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLIN------------QFSELQLNR 68

Query: 296 NELDGEIPK-FFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFS 354
             L   +P         +  L +  N+L  +               P  P  L+      
Sbjct: 69  LNLS-SLPDNLPPQ---ITVLEITQNALISL---------------PELPASLEY----- 104

Query: 355 VLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHL 414
            LD     +S ++P+  +     L  L+  +NQ+T   P   +    LE   I+  +N L
Sbjct: 105 -LDACDNRLS-TLPELPA----SLKHLDVDNNQLT-MLPELPAL---LEY--INADNNQL 152

Query: 415 EGPSPSLPSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNML 474
               P LP++   + +  N+ +           ++L  LD+S+NLL   LP   ++ +  
Sbjct: 153 TM-LPELPTSLEVLSVRNNQLTFLPELP-----ESLEALDVSTNLLES-LPAVPVRNHHS 205

Query: 475 R----ILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEEN 530
                      N  +  IP +   L    T+ L  N  S  +   L   T          
Sbjct: 206 EETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRI 264

Query: 531 SISGNIPAW 539
             S +    
Sbjct: 265 YFSMSDGQQ 273

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 73.5 bits (180), Expect = 1e-13
 Identities = 40/237 (16%), Positives = 73/237 (30%), Gaps = 54/237 (22%)

Query: 105 MSGNASLRGTLNPALLKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPI 164
           + G              ++    L L+  N   S +P  +    ++  L++   +    +
Sbjct: 41  LPGENRNEAVSLLKECLINQFSELQLNRLNL--SSLPDNLP--PQITVLEITQNALI-SL 95

Query: 165 PPLLGNLSRLQYLSLGYNKL--------------LRAGNLDWISQLF-SLRYLDLSSCNL 209
           P L  +   L+YL    N+L              +    L  + +L   L Y++  +  L
Sbjct: 96  PELPAS---LEYLDACDNRLSTLPELPASLKHLDVDNNQLTMLPELPALLEYINADNNQL 152

Query: 210 SKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIY 269
           +   +         SL+ L +    L   P             SLE L +S N L     
Sbjct: 153 TMLPELPT------SLEVLSVRNNQLTFLP---------ELPESLEALDVSTNLLE---- 193

Query: 270 PWLFNVSSIPDAPGPMISLRT----LTLSDNELDGEIPKFFQNMFKLEGLSLRGNSL 322
                  S+P  P                +N +   IP+   ++     + L  N L
Sbjct: 194 -------SLPAVPVRNHHSEETEIFFRCRENRI-THIPENILSLDPTCTIILEDNPL 242

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 69.6 bits (170), Expect = 2e-12
 Identities = 68/429 (15%), Positives = 125/429 (29%), Gaps = 113/429 (26%)

Query: 164 IPPLLGNLSRLQYLSLGYNKLLRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIP 223
                    +        N+ +    L     +     L L+  NLS   D L      P
Sbjct: 29  YFSAWDKWEKQALPGENRNEAVS---LLKECLINQFSELQLNRLNLSSLPDNL-----PP 80

Query: 224 SLKTLYLEQCDLQLQPTIHRSFSHLNSSP-SLETLGLSYNNLTASIYPWLFNVSSIPDAP 282
            +  L + Q  L            L   P SLE L    N L+           ++P+ P
Sbjct: 81  QITVLEITQNAL----------ISLPELPASLEYLDACDNRLS-----------TLPELP 119

Query: 283 GPMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPH 342
               SL+ L + +N+L   +P+       LE ++   N L                    
Sbjct: 120 A---SLKHLDVDNNQLT-MLPELPAL---LEYINADNNQLT------------------- 153

Query: 343 FPKWLQTQKHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFIL 402
                                   +P+  +     L  L+  +NQ+T   P    S+  L
Sbjct: 154 -----------------------MLPELPT----SLEVLSVRNNQLT-FLPELPESLEAL 185

Query: 403 ESPGIDISSNHLEGPSPSLPSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSG 462
                D+S+N LE    SLP+                      S +  ++     N ++ 
Sbjct: 186 -----DVSTNLLE----SLPAVP---------------VRNHHSEETEIFFRCRENRIT- 220

Query: 463 KLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHL 522
            +P+  L  +    + L +N  S +I  S    Q+      H       +    +N  H 
Sbjct: 221 HIPENILSLDPTCTIILEDNPLSSRIRESLS--QQTAQPDYHGPRIYFSMSDGQQNTLHR 278

Query: 523 RVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNIS 582
            +          N  + +   + +    +  +N F   +  +L      +        ++
Sbjct: 279 PLADAVTAWFPENKQSDV-SQIWHAFEHEEHANTFSAFLD-RLSDTVSARNTSGFREQVA 336

Query: 583 GNIPKCFNN 591
             + K   +
Sbjct: 337 AWLEKLSAS 345

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 64.6 bits (157), Expect = 8e-11
 Identities = 44/251 (17%), Positives = 77/251 (30%), Gaps = 45/251 (17%)

Query: 125 LRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKL 184
           L +LD   N  S   +P    SL   ++LD+     +  +P L   L   +Y++   N+L
Sbjct: 102 LEYLDACDNRLS--TLPELPASL---KHLDVDNNQLTM-LPELPALL---EYINADNNQL 152

Query: 185 LRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDL-QLQPTIHR 243
                L       SL  L + +  L+   +  +      SL+ L +    L  L     R
Sbjct: 153 ---TMLP--ELPTSLEVLSVRNNQLTFLPELPE------SLEALDVSTNLLESLPAVPVR 201

Query: 244 SFSHLNSS--------------------PSLETLGLSYNNLTASIYPWLFNVSSIPDAPG 283
           +     +                         T+ L  N L++ I   L   ++ PD  G
Sbjct: 202 NHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHG 261

Query: 284 PMISLRTLTLSDN---ELDGEIPKFFQNMFKLEGLSLRGNSLEGVI-SEHFFSNFSYLKM 339
           P I         N       +    +    K   +S   ++ E    +  F +    L  
Sbjct: 262 PRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLDRLSD 321

Query: 340 GPHFPKWLQTQ 350
                     +
Sbjct: 322 TVSARNTSGFR 332

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 87.0 bits (216), Expect = 1e-18
 Identities = 65/319 (20%), Positives = 101/319 (31%), Gaps = 52/319 (16%)

Query: 251 SPSLETLGLSYNNLTASIYPWLFNVSSIP-DAPGPMISLRTLTLSDNELDGEIPKFFQNM 309
            P    L L  N +T            I       + +L TL L +N++    P  F  +
Sbjct: 51  PPDTALLDLQNNKIT-----------EIKDGDFKNLKNLHTLILINNKISKISPGAFAPL 99

Query: 310 FKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAGISDSIPD 369
            KLE L L  N L+  + E                  LQ       L +    I+     
Sbjct: 100 VKLERLYLSKNQLK-ELPEKMPKT-------------LQE------LRVHENEITKVRKS 139

Query: 370 WFSDTSHKLADLNFSHNQMTGRF--PNYISSMFILESPGIDISSNHLEGPSPSLPSNAFY 427
            F+  +  +  +    N +            M  L    I I+  ++      LP +   
Sbjct: 140 VFNGLNQ-MIVVELGTNPLKSSGIENGAFQGMKKLSY--IRIADTNITTIPQGLPPSLTE 196

Query: 428 IDLSKNKFSGPISFL--CSFSG-QNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNF 484
           + L  NK    I+ +   S  G  NL  L LS N +S            LR L+L NN  
Sbjct: 197 LHLDGNK----ITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL 252

Query: 485 SGKIPNSCGYLQKMLTLSLHHNNFSG------ELPSLLKNFTHLRVVALEENSIS-GNIP 537
             K+P      + +  + LH+NN S         P           V+L  N +    I 
Sbjct: 253 V-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQ 311

Query: 538 AWIGESLLNLVVLDLRSNR 556
                 +     + L + +
Sbjct: 312 PSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 86.6 bits (215), Expect = 2e-18
 Identities = 44/245 (17%), Positives = 84/245 (34%), Gaps = 41/245 (16%)

Query: 118 ALLKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPP-LLGNLSRLQY 176
           A   L  L  L LS N     ++P        L+ L +     +  +   +   L+++  
Sbjct: 95  AFAPLVKLERLYLSKNQLK--ELPE--KMPKTLQELRVHENEITK-VRKSVFNGLNQMIV 149

Query: 177 LSLGYNKLLRAG-NLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDL 235
           + LG N L  +G        +  L Y+ ++  N++     L      PSL  L+L+   +
Sbjct: 150 VELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL-----PPSLTELHLDGNKI 204

Query: 236 QLQPTIH-RSFSHLNSSPSLETLGLSYNNLTASIYPWLF--------------NVSSIPD 280
                +   S   L    +L  LGLS+N+++ ++                    +  +P 
Sbjct: 205 T---KVDAASLKGL---NNLAKLGLSFNSIS-AVDNGSLANTPHLRELHLNNNKLVKVPG 257

Query: 281 APGPMISLRTLTLSDNEL------DGEIPKFFQNMFKLEGLSLRGNSLEGV-ISEHFFSN 333
                  ++ + L +N +      D   P +        G+SL  N ++   I    F  
Sbjct: 258 GLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRC 317

Query: 334 FSYLK 338
                
Sbjct: 318 VYVRA 322

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 83.9 bits (208), Expect = 1e-17
 Identities = 53/294 (18%), Positives = 95/294 (32%), Gaps = 60/294 (20%)

Query: 118 ALLKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLF--------AASFSG------- 162
               L  L  L L  N  S      F   L KLE L L                      
Sbjct: 71  DFKNLKNLHTLILINNKISKISPGAFAP-LVKLERLYLSKNQLKELPEKMPKTLQELRVH 129

Query: 163 -----PIPP-LLGNLSRLQYLSLGYNKLLRAG-NLDWISQLFSLRYLDLSSCNLSKSTDW 215
                 +   +   L+++  + LG N L  +G        +  L Y+ ++  N++     
Sbjct: 130 ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQG 189

Query: 216 LQEVDKIPSLKTLYLEQCDLQLQPTIH-RSFSHLNSSPSLETLGLSYNNLTASIYPWLFN 274
           L      PSL  L+L+   +     +   S   L    +L  LGLS+N+++ ++      
Sbjct: 190 L-----PPSLTELHLDGNKIT---KVDAASLKGL---NNLAKLGLSFNSIS-AVDNGSLA 237

Query: 275 VSSIPDAPGPMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNF 334
                        LR L L++N+L  ++P    +   ++ + L  N++  + S  F    
Sbjct: 238 ---------NTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPG 287

Query: 335 SYLKMGPHFPKWLQTQKHFSVLDISSAGISDSI--PDWFSDTSHKLADLNFSHN 386
              K              +S + + S  +      P  F       A +   + 
Sbjct: 288 YNTKK-----------ASYSGVSLFSNPVQYWEIQPSTFRCVY-VRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 81.2 bits (201), Expect = 1e-16
 Identities = 58/342 (16%), Positives = 101/342 (29%), Gaps = 75/342 (21%)

Query: 407 IDISSNHLEGPSPSLPSNAFYIDLSKNKFSGPISFL--CSFSG-QNLVYLDLSSNLLSGK 463
           +  S   LE     LP +   +DL  NK    I+ +    F   +NL  L L +N +S  
Sbjct: 36  VQCSDLGLEKVPKDLPPDTALLDLQNNK----ITEIKDGDFKNLKNLHTLILINNKISKI 91

Query: 464 LPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLR 523
            P  +     L  L L+ N    ++P      + +  L +H N  +    S+      + 
Sbjct: 92  SPGAFAPLVKLERLYLSKNQLK-ELPE--KMPKTLQELRVHENEITKVRKSVFNGLNQMI 148

Query: 524 VVALEENSI-SGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNIS 582
           VV L  N + S  I     + +  L  + +        IP  L     +  L L  N I+
Sbjct: 149 VVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI-TTIPQGL--PPSLTELHLDGNKIT 205

Query: 583 GNIPK-CFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKN 641
             +          +                                              
Sbjct: 206 -KVDAASLKGLNNL---------------------------------------------- 218

Query: 642 TLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSR 701
                  + LS N +       + +   L  L+L+ N L   +   +   + +  + L  
Sbjct: 219 -----AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHN 272

Query: 702 NQFSG------GIPSSLSQVNRLSVMDLSHNNLS-GKIPTGT 736
           N  S         P   ++    S + L  N +   +I   T
Sbjct: 273 NNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPST 314

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 78.1 bits (193), Expect = 1e-15
 Identities = 54/233 (23%), Positives = 102/233 (43%), Gaps = 17/233 (7%)

Query: 355 VLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHL 414
           +LD+ +  I++     F +  + L  L   +N+++   P   + +  LE   + +S N L
Sbjct: 56  LLDLQNNKITEIKDGDFKNLKN-LHTLILINNKISKISPGAFAPLVKLER--LYLSKNQL 112

Query: 415 EGPSPSLPSNAFYIDLSKNKFSGPISFL--CSFSG-QNLVYLDLSSNLL-SGKLPDCWLQ 470
           +     +P     + + +N+    I+ +    F+G   ++ ++L +N L S  + +   Q
Sbjct: 113 KELPEKMPKTLQELRVHENE----ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 168

Query: 471 -FNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEE 529
               L  + +A+ N +  IP   G    +  L L  N  +    + LK   +L  + L  
Sbjct: 169 GMKKLSYIRIADTNIT-TIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSF 225

Query: 530 NSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNIS 582
           NSIS  +      +  +L  L L +N+   K+P  L     IQ++ L  NNIS
Sbjct: 226 NSIS-AVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS 276

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 77.7 bits (192), Expect = 1e-15
 Identities = 65/344 (18%), Positives = 119/344 (34%), Gaps = 63/344 (18%)

Query: 253 SLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIPKFFQNMFKL 312
            L  +  S   L             +P    P      L L +N++       F+N+  L
Sbjct: 32  HLRVVQCSDLGLE-----------KVPKDLPP--DTALLDLQNNKITEIKDGDFKNLKNL 78

Query: 313 EGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAGISDSIPDWFS 372
             L L  N +   IS   F+    L+                 L +S   +   +P    
Sbjct: 79  HTLILINNKIS-KISPGAFAPLVKLE----------------RLYLSKNQLK-ELP---E 117

Query: 373 DTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSLPSNAF------ 426
                L +L    N++T    +  + +  +    +++ +N L+  S  + + AF      
Sbjct: 118 KMPKTLQELRVHENEITKVRKSVFNGLNQMIV--VELGTNPLK--SSGIENGAFQGMKKL 173

Query: 427 -YIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQ-FNMLRILNLANNNF 484
            YI ++       I+ +      +L  L L  N ++ K+    L+  N L  L L+ N+ 
Sbjct: 174 SYIRIADTN----ITTIPQGLPPSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSI 228

Query: 485 SGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSIS-----GNIPAW 539
           S     S      +  L L++N    ++P  L +  +++VV L  N+IS        P  
Sbjct: 229 SAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPG 287

Query: 540 IGESLLNLVVLDLRSNRF-YGKIP---FQLCHLADIQILDLSLN 579
                 +   + L SN   Y +I    F+   +     + L   
Sbjct: 288 YNTKKASYSGVSLFSNPVQYWEIQPSTFR--CVYVRAAVQLGNY 329

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 87.4 bits (217), Expect = 4e-18
 Identities = 85/501 (16%), Positives = 150/501 (29%), Gaps = 109/501 (21%)

Query: 117 PALLKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQY 176
             + KL  L  L  + NN   + +   +   + L YL   +   +  +   +  L++L Y
Sbjct: 58  TGIEKLTGLTKLICTSNNI--TTLD--LSQNTNLTYLACDSNKLTN-LD--VTPLTKLTY 110

Query: 177 LSLGYNKLLRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQ 236
           L+   NKL     LD +SQ   L YL+ +   L++      +V     L  L        
Sbjct: 111 LNCDTNKL---TKLD-VSQNPLLTYLNCARNTLTE-----IDVSHNTQLTELDCHLNKKI 161

Query: 237 LQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDN 296
            +  +            L TL  S+N +T        +VS           L  L    N
Sbjct: 162 TKLDV-------TPQTQLTTLDCSFNKITE------LDVSQNK-------LLNRLNCDTN 201

Query: 297 ELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVL 356
            +  ++        +L  L    N     ++E   +  + L                   
Sbjct: 202 NIT-KLD--LNQNIQLTFLDCSSNK----LTEIDVTPLTQLT----------------YF 238

Query: 357 DISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEG 416
           D S   ++  +      T  KL  L+     +                  ID++ N    
Sbjct: 239 DCSVNPLT-ELDVS---TLSKLTTLHCIQTDLL----------------EIDLTHN---- 274

Query: 417 PSPSLPSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRI 476
                 +   Y      +    I  L       L  LD  +  ++ +L     Q   L  
Sbjct: 275 ------TQLIYFQAEGCRK---IKELDVTHNTQLYLLDCQAAGIT-ELDLS--QNPKLVY 322

Query: 477 LNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNI 536
           L L N   + ++     +  K+ +LS  + +   +  S +     L      E       
Sbjct: 323 LYLNNTELT-ELD--VSHNTKLKSLSCVNAHIQ-DFSS-VGKIPALNNNFEAEGQTITMP 377

Query: 537 PAWIGESLLNLVV----LDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNF 592
              +  + L + V    LD   N     I      + D     ++  N+S + P     F
Sbjct: 378 KETLTNNSLTIAVSPDLLDQFGNPM--NIEPGDGGVYDQATNTITWENLSTDNPAVTYTF 435

Query: 593 TAMTQERSYNSSAITFSYAVP 613
              T E       +T  +  P
Sbjct: 436 ---TSENGAIVGTVTTPFEAP 453

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 81.3 bits (201), Expect = 3e-16
 Identities = 64/416 (15%), Positives = 128/416 (30%), Gaps = 102/416 (24%)

Query: 168 LGNLSRLQYLSLGYNKLLRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKT 227
              L+ L  L    + +    ++  I +L  L  L  +S N++       ++ +  +L  
Sbjct: 38  EEQLATLTSLDCHNSSIT---DMTGIEKLTGLTKLICTSNNITT-----LDLSQNTNLTY 89

Query: 228 LYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMIS 287
           L  +   L            +     L  L    N LT            +         
Sbjct: 90  LACDSNKLTNLD--------VTPLTKLTYLNCDTNKLT-----------KLD--VSQNPL 128

Query: 288 LRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWL 347
           L  L  + N L  EI     +  +L  L    N     I++   +  + L          
Sbjct: 129 LTYLNCARNTLT-EID--VSHNTQLTELDCHLNKK---ITKLDVTPQTQLT--------- 173

Query: 348 QTQKHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGI 407
                   LD S                 K+ +L+ S N++             L    +
Sbjct: 174 -------TLDCSFN---------------KITELDVSQNKL-------------LNR--L 196

Query: 408 DISSNHLEGPSPSLPSNAFYIDLSKNKFSG-PISFLCSFSGQNLVYLDLSSNLLSGKLPD 466
           +  +N++     +      ++D S NK +   ++ L       L Y D S N L+ +L  
Sbjct: 197 NCDTNNITKLDLNQNIQLTFLDCSSNKLTEIDVTPL-----TQLTYFDCSVNPLT-ELDV 250

Query: 467 CWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVA 526
                + L  L+    +   +I  +  +  +++           EL   + + T L ++ 
Sbjct: 251 S--TLSKLTTLHCIQTDLL-EIDLT--HNTQLIYFQAEGCRKIKELD--VTHNTQLYLLD 303

Query: 527 LEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNIS 582
            +   I+  +          LV L L +     ++   + H   ++ L     +I 
Sbjct: 304 CQAAGIT-ELDL---SQNPKLVYLYLNNTELT-ELD--VSHNTKLKSLSCVNAHIQ 352

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 69.7 bits (171), Expect = 1e-12
 Identities = 69/410 (16%), Positives = 132/410 (32%), Gaps = 62/410 (15%)

Query: 360 SAGISDSIPDWFSDTS-HKLADLNFSHNQMT----GRFPN----YISSMFILESPGI--- 407
            AG + S  DWF D +        F           +          +  I +  GI   
Sbjct: 4   KAGQTQSFNDWFPDDNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTGIEKL 63

Query: 408 ------DISSNHLEGPSPSLPSNAFYIDLSKNKFSG-PISFLCSFSGQNLVYLDLSSNLL 460
                   +SN++     S  +N  Y+    NK +   ++ L       L YL+  +N L
Sbjct: 64  TGLTKLICTSNNITTLDLSQNTNLTYLACDSNKLTNLDVTPL-----TKLTYLNCDTNKL 118

Query: 461 SGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFT 520
           + KL     Q  +L  LN A N  + +I  S  +  ++  L  H N    +L   +   T
Sbjct: 119 T-KLDVS--QNPLLTYLNCARNTLT-EIDVS--HNTQLTELDCHLNKKITKLD--VTPQT 170

Query: 521 HLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNN 580
            L  +    N I+  +          L  L+  +N    K+         +  LD S N 
Sbjct: 171 QLTTLDCSFNKIT-ELDV---SQNKLLNRLNCDTNNIT-KLDL--NQNIQLTFLDCSSNK 223

Query: 581 ISGNIPKCFNNFTAMTQ-ERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEY 639
           ++  I       T +T  + S N              T L V     +  L    ++   
Sbjct: 224 LT-EID--VTPLTQLTYFDCSVN------------PLTELDVSTLSKLTTLHCIQTDLLE 268

Query: 640 KNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDL 699
            +     + +   +         ++     L  L+     +T      + Q   L +L L
Sbjct: 269 IDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGIT---ELDLSQNPKLVYLYL 325

Query: 700 SRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGKIPTGTQLQSFNASVYDGN 749
           +  + +  +   +S   +L  +   + ++     +  ++ + N +     
Sbjct: 326 NNTELT-ELD--VSHNTKLKSLSCVNAHIQ-DFSSVGKIPALNNNFEAEG 371

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 61.6 bits (150), Expect = 5e-10
 Identities = 78/525 (14%), Positives = 152/525 (28%), Gaps = 129/525 (24%)

Query: 223 PSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAP 282
            +  +      ++Q   TI  S   L    +L +L    +++T        +++ I    
Sbjct: 18  DNFASEVAAAFEMQATDTI--SEEQL---ATLTSLDCHNSSIT--------DMTGIEKLT 64

Query: 283 GPMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPH 342
                L  L  + N +   +         L  L+   N L                    
Sbjct: 65  ----GLTKLICTSNNIT-TLD--LSQNTNLTYLACDSNKL-------------------- 97

Query: 343 FPKWLQTQKHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFIL 402
                      + LD++                 KL  LN   N++T      +S   +L
Sbjct: 98  -----------TNLDVTP--------------LTKLTYLNCDTNKLT---KLDVSQNPLL 129

Query: 403 ESPGIDISSNHLEGPSPSLPSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSG 462
               ++ + N L     S  +    +D   NK    +          L  LD S N ++ 
Sbjct: 130 TY--LNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDV---TPQTQLTTLDCSFNKIT- 183

Query: 463 KLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHL 522
           +L     Q  +L  LN   NN + K+  +     ++  L    N  + E+   +   T L
Sbjct: 184 ELDVS--QNKLLNRLNCDTNNIT-KLDLN--QNIQLTFLDCSSNKLT-EID--VTPLTQL 235

Query: 523 RVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNIS 582
                  N ++  +      +L  L  L              L  +       L      
Sbjct: 236 TYFDCSVNPLT-ELDVS---TLSKLTTLHCIQT--------DLLEIDLTHNTQLIYFQAE 283

Query: 583 GNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNT 642
           G       + T  TQ    +  A   +    S+   L                       
Sbjct: 284 GCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKL----------------------- 320

Query: 643 LGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRN 702
                 + L++ +L  E+   +     L  L+    ++  +    +G++ +L+    +  
Sbjct: 321 ----VYLYLNNTELT-ELD--VSHNTKLKSLSCVNAHIQDF--SSVGKIPALNNNFEAEG 371

Query: 703 QFSGGIPSSLSQVNRLSVMDLSHNNLSGKIPTGTQLQSFNASVYD 747
           Q    +P      N L++      +L  +      ++  +  VYD
Sbjct: 372 QTI-TMPKETLTNNSLTI--AVSPDLLDQFGNPMNIEPGDGGVYD 413

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 58.9 bits (143), Expect = 4e-09
 Identities = 41/224 (18%), Positives = 69/224 (30%), Gaps = 46/224 (20%)

Query: 114 TLNPALLKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSR 173
                +     L  LD SFN    +++   +     L  L+    + +  +   L    +
Sbjct: 161 ITKLDVTPQTQLTTLDCSFNKI--TELD--VSQNKLLNRLNCDTNNITK-LD--LNQNIQ 213

Query: 174 LQYLSLGYNKLLRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQC 233
           L +L    NKL     +D ++ L  L Y D S   L++          +  L TL+  Q 
Sbjct: 214 LTFLDCSSNKLT---EID-VTPLTQLTYFDCSVNPLTELDVS-----TLSKLTTLHCIQT 264

Query: 234 DL------QLQPTIHRSFSHLNSS--------PSLETLGLSYNNLTASIYPWLFNVSSIP 279
           DL           I+                   L  L      +T            + 
Sbjct: 265 DLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGIT-----------ELD 313

Query: 280 DAPGPMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLE 323
                   L  L L++ EL  E+     +  KL+ LS     ++
Sbjct: 314 --LSQNPKLVYLYLNNTELT-ELD--VSHNTKLKSLSCVNAHIQ 352

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 53.2 bits (128), Expect = 2e-07
 Identities = 52/313 (16%), Positives = 99/313 (31%), Gaps = 64/313 (20%)

Query: 448 QNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNN 507
             L  LD  ++ ++  +     +   L  L   +NN +    +    L     L+   N 
Sbjct: 42  ATLTSLDCHNSSIT-DMTGIE-KLTGLTKLICTSNNITTLDLSQNTNLT---YLACDSNK 96

Query: 508 FSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCH 567
            +  L   +   T L  +  + N ++  +          L  L+   N         + H
Sbjct: 97  LT-NLD--VTPLTKLTYLNCDTNKLT-KLDV---SQNPLLTYLNCARNTLT---EIDVSH 146

Query: 568 LADIQILDLSLNNISGNIPKCFNNFTAMTQ-ERSYNS-SAITFSYAVPSRTTMLPVHIFF 625
              +  LD  LN     +       T +T  + S+N  + +  S                
Sbjct: 147 NTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKITELDVSQ--------------- 189

Query: 626 DIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYIT 685
                              L+  ++  +N +  ++   +   + L  L+ S N LT    
Sbjct: 190 -----------------NKLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLT---E 226

Query: 686 PKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSG-KIPTGTQLQSFNAS 744
             +  L  L + D S N  +    S+LS++  L        +L    +   TQL  F A 
Sbjct: 227 IDVTPLTQLTYFDCSVNPLTELDVSTLSKLTTL---HCIQTDLLEIDLTHNTQLIYFQAE 283

Query: 745 VYDGNPELCGLPL 757
              G  ++  L +
Sbjct: 284 ---GCRKIKELDV 293

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 83.6 bits (207), Expect = 2e-17
 Identities = 47/226 (20%), Positives = 83/226 (36%), Gaps = 21/226 (9%)

Query: 118 ALLKLHYLRHLDLSFNNFSGSQIP--MFIGSLSKLEYLDLFAASFSGPIPP--LLGNLSR 173
           +   L  L HLDLS+N  S   +    F   LS L +L+L    +   +    L  +L++
Sbjct: 95  SFSSLGSLEHLDLSYNYLS--NLSSSWFKP-LSSLTFLNLLGNPYKT-LGETSLFSHLTK 150

Query: 174 LQYLSLGYNKLLRAGNLDWISQLFSLRYLDLSSCNLSK-STDWLQEVDKIPSLKTLYLEQ 232
           LQ L +G             + L  L  L++ + +L       L     I ++  L L  
Sbjct: 151 LQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSL---KSIQNVSHLILHM 207

Query: 233 CDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLT 292
               L   I           S+E L L   +L    +  L    +  ++     + R + 
Sbjct: 208 KQHILLLEI--FVDVT---SSVECLELRDTDLDTFHFSELSTGET--NSLIKKFTFRNVK 260

Query: 293 LSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLK 338
           ++D  L  ++ K    +  L  L    N L+  + +  F   + L+
Sbjct: 261 ITDESL-FQVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQ 304

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 73.6 bits (181), Expect = 5e-14
 Identities = 71/337 (21%), Positives = 116/337 (34%), Gaps = 52/337 (15%)

Query: 110 SLRGTLNPALLKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLG 169
           S   + N A L          S  + +   IP   G    ++ LDL     +      L 
Sbjct: 18  SKEESSNQASLSCDRNGICKGSSGSLN--SIP--SGLTEAVKSLDLSNNRITYISNSDLQ 73

Query: 170 NLSRLQYLSLGYNKL--LRAGNLDWISQLFSLRYLDLSSCNLSK-STDWLQEVDKIPSLK 226
               LQ L L  N +  +   +      L SL +LDLS   LS  S+ W      + SL 
Sbjct: 74  RCVNLQALVLTSNGINTIEEDSFS---SLGSLEHLDLSYNYLSNLSSSWF---KPLSSLT 127

Query: 227 TLYLEQCDLQ-LQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPM 285
            L L     + L  T    FSHL     L+ L +   +    I                +
Sbjct: 128 FLNLLGNPYKTLGETSL--FSHL---TKLQILRVGNMDTFTKIQ---------RKDFAGL 173

Query: 286 ISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPK 345
             L  L +  ++L    PK  +++  +  L L       ++ E F    S ++       
Sbjct: 174 TFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDT 232

Query: 346 WLQTQKHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESP 405
            L T  HFS L   S G ++S+   F+       ++  +   +  +    ++ +  L   
Sbjct: 233 DLDT-FHFSEL---STGETNSLIKKFT-----FRNVKITDESLF-QVMKLLNQISGLLE- 281

Query: 406 GIDISSNHLEGPSPSLPSNAF-------YIDLSKNKF 435
            ++ S N L+    S+P   F        I L  N +
Sbjct: 282 -LEFSRNQLK----SVPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 65.1 bits (159), Expect = 3e-11
 Identities = 51/326 (15%), Positives = 100/326 (30%), Gaps = 54/326 (16%)

Query: 408 DISSNHLEGPSPSLPSNAFYIDLSKNKFSGPISFL--CSFSG-QNLVYLDLSSNLLSGKL 464
             SS  L      L      +DLS N+    I+++         NL  L L+SN ++   
Sbjct: 37  KGSSGSLNSIPSGLTEAVKSLDLSNNR----ITYISNSDLQRCVNLQALVLTSNGIN--- 89

Query: 465 PDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRV 524
                         +  ++FS         L  +  L L +N  S    S  K  + L  
Sbjct: 90  -------------TIEEDSFSS--------LGSLEHLDLSYNYLSNLSSSWFKPLSSLTF 128

Query: 525 VALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQ-LCHLADIQILDLSLNNISG 583
           + L  N         +   L  L +L + +   + KI  +    L  ++ L++  +++  
Sbjct: 129 LNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS 188

Query: 584 NIPKCFNNFTAMTQ-ERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNT 642
             PK   +   ++                   +  +L          +          +T
Sbjct: 189 YEPKSLKSIQNVSHLILHMK------------QHILLLEIFVDVTSSVECLELRDTDLDT 236

Query: 643 LGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRN 702
               +     +N L        +       + ++  +L   +   + Q+  L  L+ SRN
Sbjct: 237 FHFSELSTGETNSL--------IKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRN 287

Query: 703 QFSGGIPSSLSQVNRLSVMDLSHNNL 728
           Q          ++  L  + L  N  
Sbjct: 288 QLKSVPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 63.6 bits (155), Expect = 7e-11
 Identities = 43/290 (14%), Positives = 93/290 (32%), Gaps = 48/290 (16%)

Query: 449 NLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNF 508
            +  LDLS+N ++        +   L+ L L +N  +    +S   L  +  L L +N  
Sbjct: 53  AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 112

Query: 509 SGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQ-LCH 567
           S    S  K  + L  + L  N         +   L  L +L + +   + KI  +    
Sbjct: 113 SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAG 172

Query: 568 LADIQILDLSLNNISGNIPKCFNNFTAMTQ-ERSYNSSAITFSYAVPSRTTMLPVHIFFD 626
           L  ++ L++  +++    PK   +   ++                   +  +L       
Sbjct: 173 LTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMK------------QHILLLEIFV-- 218

Query: 627 IVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITP 686
                         +    V+ ++L    L                     + L+   T 
Sbjct: 219 --------------DVTSSVECLELRDTDLD----------------TFHFSELSTGETN 248

Query: 687 KIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGKIPTGT 736
            + +  +   + ++       +   L+Q++ L  ++ S N L   +P G 
Sbjct: 249 SLIKKFTFRNVKITDESLFQ-VMKLLNQISGLLELEFSRNQLKS-VPDGI 296

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 63.6 bits (155), Expect = 7e-11
 Identities = 52/317 (16%), Positives = 99/317 (31%), Gaps = 62/317 (19%)

Query: 251 SPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIPKFFQNMF 310
           + ++++L LS N +T  I                 ++L+ L L+ N ++      F ++ 
Sbjct: 51  TEAVKSLDLSNNRIT-YISNSDLQ---------RCVNLQALVLTSNGINTIEEDSFSSLG 100

Query: 311 KLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAGISDSIPDW 370
            LE L L  N L   +S  +F   S L                  L++            
Sbjct: 101 SLEHLDLSYNYLS-NLSSSWFKPLSSLT----------------FLNLLGNPYKTLGETS 143

Query: 371 FSDTSHKLADLNFSHN-QMTGRFPNYISSMFILESPGIDISSNHLEGPSPSLPSNAFYID 429
                 KL  L   +    T       + +  LE   ++I ++ L     S    +    
Sbjct: 144 LFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEE--LEIDASDL----QSYEPKSLK-- 195

Query: 430 LSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNN------ 483
                           S QN+ +L L        L       + +  L L + +      
Sbjct: 196 ----------------SIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHF 239

Query: 484 --FSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIG 541
              S    NS         + +   +   ++  LL   + L  +    N +  ++P  I 
Sbjct: 240 SELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLK-SVPDGIF 297

Query: 542 ESLLNLVVLDLRSNRFY 558
           + L +L  + L +N + 
Sbjct: 298 DRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 63.6 bits (155), Expect = 9e-11
 Identities = 58/340 (17%), Positives = 103/340 (30%), Gaps = 88/340 (25%)

Query: 198 SLRYLDLSSCNLSK-STDWLQEVDKIPSLKTLYLEQCDLQLQPTIH-RSFSHLNSSPSLE 255
           +++ LDLS+  ++  S   L    +  +L+ L L    +    TI   SFS L    SLE
Sbjct: 53  AVKSLDLSNNRITYISNSDL---QRCVNLQALVLTSNGIN---TIEEDSFSSL---GSLE 103

Query: 256 TLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIPK--FFQNMFKLE 313
            L LSYN L+ ++    F          P+ SL  L L  N     + +   F ++ KL+
Sbjct: 104 HLDLSYNYLS-NLSSSWFK---------PLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQ 152

Query: 314 GLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAGISDSIPDWFSD 373
            L +        I    F+  ++L+                 L+I ++ +    P     
Sbjct: 153 ILRVGNMDTFTKIQRKDFAGLTFLE----------------ELEIDASDLQSYEPKSLKS 196

Query: 374 TSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSLPSNAFYIDLSKN 433
               ++ L     Q                                 L            
Sbjct: 197 IQ-NVSHLILHMKQHI------------------------------LLLEIFV------- 218

Query: 434 KFSGPISFLCSFSGQNLVYLDLSSN---LLSGKLPDCWLQFNMLRILNLANNNFSGKIPN 490
                     S     L   DL +     LS    +  ++    R + + + +   ++  
Sbjct: 219 ------DVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMK 271

Query: 491 SCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEEN 530
               +  +L L    N        +    T L+ + L  N
Sbjct: 272 LLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 58.6 bits (142), Expect = 3e-09
 Identities = 44/260 (16%), Positives = 93/260 (35%), Gaps = 27/260 (10%)

Query: 355 VLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHL 414
            LD+S+  I+           + L  L  + N +     +  SS+  LE   +D+S N+L
Sbjct: 56  SLDLSNNRITYISNSDLQRCVN-LQALVLTSNGINTIEEDSFSSLGSLEH--LDLSYNYL 112

Query: 415 EGPSPSLPSNAF-------YIDLSKNKFSGPISFLCSFSGQ-NLVYLDLSSNLLSGKLPD 466
                +L S+ F       +++L  N +   +     FS    L  L + +     K+  
Sbjct: 113 S----NLSSSWFKPLSSLTFLNLLGNPYKT-LGETSLFSHLTKLQILRVGNMDTFTKIQR 167

Query: 467 CWLQ-FNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVV 525
                   L  L +  ++     P S   +Q +  L LH       L   +   + +  +
Sbjct: 168 KDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECL 227

Query: 526 ALEENSISGN----IPAWIGESLLNLVVL---DLRSNRFYGKIPFQLCHLADIQILDLSL 578
            L +  +       +      SL+         +     + ++   L  ++ +  L+ S 
Sbjct: 228 ELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSR 286

Query: 579 NNISGNIPK-CFNNFTAMTQ 597
           N +  ++P   F+  T++ +
Sbjct: 287 NQLK-SVPDGIFDRLTSLQK 305

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 45.1 bits (107), Expect = 7e-05
 Identities = 37/210 (17%), Positives = 64/210 (30%), Gaps = 41/210 (19%)

Query: 531 SISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFN 590
           SI   +          +  LDL +NR        L    ++Q L L+ N I+      F+
Sbjct: 45  SIPSGLTE-------AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFS 97

Query: 591 NFTAMTQER-SYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSV 649
           +  ++     SYN              + L    F  +  LT                 +
Sbjct: 98  SLGSLEHLDLSYN------------YLSNLSSSWFKPLSSLT----------------FL 129

Query: 650 DLSSNKLGGEVPEEIM--DLVGLIGLNLSRNNLTGYITPKI-GQLQSLDFLDLSRNQFSG 706
           +L  N     + E  +   L  L  L +   +    I  K    L  L+ L++  +    
Sbjct: 130 NLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS 188

Query: 707 GIPSSLSQVNRLSVMDLSHNNLSGKIPTGT 736
             P SL  +  +S + L        +    
Sbjct: 189 YEPKSLKSIQNVSHLILHMKQHI-LLLEIF 217

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 83.9 bits (208), Expect = 4e-17
 Identities = 76/479 (15%), Positives = 140/479 (29%), Gaps = 90/479 (18%)

Query: 125 LRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFS----GPIPPLLGNLSRLQYLSLG 180
           ++ LD+     S ++    +  L + + + L     +      I   L     L  L+L 
Sbjct: 5   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 64

Query: 181 YNKLLRAGNLDWISQL----FSLRYLDLSSCNLS-KSTDWLQEV-DKIPSLKTLYLEQCD 234
            N+L   G    +  L      ++ L L +C L+      L      +P+L+ L+L    
Sbjct: 65  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 124

Query: 235 LQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLS 294
           L            L+    LE L L Y +L+A+          +          + LT+S
Sbjct: 125 LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAAS------CEPLASVLRAKPDFKELTVS 178

Query: 295 DNELDGE-----IPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQT 349
           +N+++             +  +LE L L    +                        + +
Sbjct: 179 NNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGI-------------VAS 225

Query: 350 QKHFSVLDISSAGISDS----IPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESP 405
           +     L + S  + D     +       S +L  L      +T +    +  +      
Sbjct: 226 KASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVL----- 280

Query: 406 GIDISSNHLEGPSPSLPSNAFYIDLSKNKFSGP----ISFLCSFSGQNLVYLDLSSNLLS 461
               +   L+            + L+ N+        +       G  L  L + S   +
Sbjct: 281 ---RAKESLK-----------ELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFT 326

Query: 462 GK----LPDCWLQFNM-LRILNLANNNFSG----------KIPNSCGYLQKMLTLSLHHN 506
                      L  N  L  L ++NN                P S      +  L L   
Sbjct: 327 AACCSHFSSV-LAQNRFLLELQISNNRLEDAGVRELCQGLGQPGS-----VLRVLWLADC 380

Query: 507 NFSGE----LPSLLKNFTHLRVVALEENSISGNIPAWIGESL----LNLVVLDLRSNRF 557
           + S      L + L     LR + L  N +       + ES+      L  L L    +
Sbjct: 381 DVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYW 439

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 80.0 bits (198), Expect = 8e-16
 Identities = 75/459 (16%), Positives = 135/459 (29%), Gaps = 102/459 (22%)

Query: 174 LQYLSLGYNKLLRAGNLDWISQLFSLRYLDLSSCNLSKSTDW--LQEVDKI-PSLKTLYL 230
           +Q L +   +L  A   + +  L   + + L  C L+       +    ++ P+L  L L
Sbjct: 5   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLT-EARCKDISSALRVNPALAELNL 63

Query: 231 EQCDLQLQPTIHRSFSHL-----NSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPM 285
              +L            +       S  ++ L L    LT +          +      +
Sbjct: 64  RSNELG-----DVGVHCVLQGLQTPSCKIQKLSLQNCCLTGA------GCGVLSSTLRTL 112

Query: 286 ISLRTLTLSDNELDGE-----IPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMG 340
            +L+ L LSDN L                 +LE L L   SL     E   S        
Sbjct: 113 PTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLAS-------- 164

Query: 341 PHFPKWLQTQKHFSVLDISSAGISDS----IPDWFSDTSHKLADLNFSHNQMTGRFPNYI 396
                 L+ +  F  L +S+  I+++    +     D+  +L  L      +T      +
Sbjct: 165 -----VLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDL 219

Query: 397 SSMFILESPGIDISSNHLEGPSPSLPSNAFYIDLSKNKFSGP-ISFLCS---FSGQNLVY 452
             +          S   L             + L  NK     ++ LC         L  
Sbjct: 220 CGIV--------ASKASLR-----------ELALGSNKLGDVGMAELCPGLLHPSSRLRT 260

Query: 453 LDLSSNLLSGKLPDCW------LQFN-MLRILNLANNNFSG----------KIPNSCGYL 495
           L +    ++             L+    L+ L+LA N                P      
Sbjct: 261 LWIWECGIT---AKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGC---- 313

Query: 496 QKMLTLSLHHNNFSGE----LPSLLKNFTHLRVVALEENSISGNIPAWIGESLLN----L 547
            ++ +L +   +F+        S+L     L  + +  N +       + + L      L
Sbjct: 314 -QLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVL 372

Query: 548 VVLDLRSNRF----YGKIPFQLCHLADIQILDLSLNNIS 582
            VL L            +   L     ++ LDLS N + 
Sbjct: 373 RVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 70.4 bits (173), Expect = 1e-12
 Identities = 93/457 (20%), Positives = 146/457 (31%), Gaps = 96/457 (21%)

Query: 118 ALLKLHYLRHLDLSFNNFSGSQIPMFIGSLS----KLEYLDLFAASFS----GPIPPLLG 169
           AL     L  L+L  N      +   +  L     K++ L L     +    G +   L 
Sbjct: 51  ALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLR 110

Query: 170 NLSRLQYLSLGYNKLLRAGNLDWISQLF-----SLRYLDLSSCNLS-KSTDWLQEV-DKI 222
            L  LQ L L  N L  AG L  + +        L  L L  C+LS  S + L  V    
Sbjct: 111 TLPTLQELHLSDNLLGDAG-LQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAK 169

Query: 223 PSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAP 282
           P  K L +   D+             +S   LE L L    +T+       N   +    
Sbjct: 170 PDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSD------NCRDLCGIV 223

Query: 283 GPMISLRTLTLSDNELDGE-----IPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYL 337
               SLR L L  N+L         P       +L  L +        I+     +   +
Sbjct: 224 ASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECG----ITAKGCGDLCRV 279

Query: 338 KMGPHFPKWLQTQKHFSVLDISSAGISDS----IPDWFSDTSHKLADLNFSHNQMTGRFP 393
                    L+ ++    L ++   + D     + +   +   +L  L       T    
Sbjct: 280 ---------LRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACC 330

Query: 394 NYISSMFILESPGIDISSN-HLEGPSPSLPSNAFYIDLSKNKFSGP-ISFLCSFSGQN-- 449
           ++ SS+         ++ N  L             + +S N+     +  LC   GQ   
Sbjct: 331 SHFSSV---------LAQNRFLL-----------ELQISNNRLEDAGVRELCQGLGQPGS 370

Query: 450 -LVYLDLSSNLLSGKLPDCW-----LQFNM-LRILNLANNNFSG----------KIPNSC 492
            L  L L+   +S     C      L  N  LR L+L+NN              + P   
Sbjct: 371 VLRVLWLADCDVSDS--SCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC- 427

Query: 493 GYLQKMLTLSLHHNNFSGE----LPSLLKNFTHLRVV 525
                +  L L+   +S E    L +L K+   LRV+
Sbjct: 428 ----LLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 460

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 67.3 bits (165), Expect = 9e-12
 Identities = 74/489 (15%), Positives = 144/489 (29%), Gaps = 127/489 (25%)

Query: 287 SLRTLTLSDNEL-DGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPK 345
            +++L +   EL D    +    + + + + L        ++E    + S          
Sbjct: 4   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCG----LTEARCKDISSA-------- 51

Query: 346 WLQTQKHFSVLDISSAGISDS----IPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFI 401
            L+     + L++ S  + D     +       S K+  L+  +  +TG     +SS   
Sbjct: 52  -LRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLR 110

Query: 402 LESPGIDISSNHLEGPSPSLPSNAFYIDLSKNKFSGP-ISFLCSFSGQN---LVYLDLSS 457
                   +   L+            + LS N      +  LC         L  L L  
Sbjct: 111 --------TLPTLQ-----------ELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEY 151

Query: 458 NLLSGKLPDCW------LQFN-MLRILNLANNNFSGK-IPNSCGYLQ----KMLTLSLHH 505
             LS             L+     + L ++NN+ +   +   C  L+    ++  L L  
Sbjct: 152 CSLS---AASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLES 208

Query: 506 NNFSGE----LPSLLKNFTHLRVVALEENSISGNIPAWIGESLLN----LVVLDLRSNRF 557
              + +    L  ++ +   LR +AL  N +     A +   LL+    L  L +     
Sbjct: 209 CGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGI 268

Query: 558 ----YGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVP 613
                G +   L     ++ L L+ N +                    +  A      + 
Sbjct: 269 TAKGCGDLCRVLRAKESLKELSLAGNELG-------------------DEGARLLCETLL 309

Query: 614 SRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVG---- 669
                L                           +S+ + S             ++     
Sbjct: 310 EPGCQL---------------------------ESLWVKSCSFTAACCSHFSSVLAQNRF 342

Query: 670 LIGLNLSRNNLTGYITPKIGQL-----QSLDFLDLSRNQFS----GGIPSSLSQVNRLSV 720
           L+ L +S N L      ++ Q        L  L L+    S      + ++L   + L  
Sbjct: 343 LLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRE 402

Query: 721 MDLSHNNLS 729
           +DLS+N L 
Sbjct: 403 LDLSNNCLG 411

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 63.4 bits (155), Expect = 1e-10
 Identities = 54/302 (17%), Positives = 99/302 (32%), Gaps = 50/302 (16%)

Query: 115 LNPALLKLHYLRHLDLSFNNFSGSQIPMFIGSLS----KLEYLDLFAASFS----GPIPP 166
           L   L      + L +S N+ + + + +    L     +LE L L +   +      +  
Sbjct: 162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCG 221

Query: 167 LLGNLSRLQYLSLGYNKLLRAGNLD----WISQLFSLRYLDLSSCNLS-KSTDWLQEVDK 221
           ++ + + L+ L+LG NKL   G  +     +     LR L +  C ++ K    L  V +
Sbjct: 222 IVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLR 281

Query: 222 I-PSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPD 280
              SLK L L   +L  +       + L     LE+L +   + TA+        S    
Sbjct: 282 AKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAA------CCSHFSS 335

Query: 281 APGPMISLRTLTLSDNELDGEIPKFF-----QNMFKLEGLSLRGNSL--EGV--ISEHFF 331
                  L  L +S+N L+    +       Q    L  L L    +       ++    
Sbjct: 336 VLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLL 395

Query: 332 SNFSYLKMGPHFPKWLQTQKHFSVLDISSAGISDS----IPDWFSDTSHKLADLNFSHNQ 387
           +N                      LD+S+  + D+    + +        L  L      
Sbjct: 396 AN-----------------HSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIY 438

Query: 388 MT 389
            +
Sbjct: 439 WS 440

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 79.6 bits (196), Expect = 3e-16
 Identities = 57/305 (18%), Positives = 96/305 (31%), Gaps = 44/305 (14%)

Query: 122 LHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPL---LGNLSRLQYLS 178
              L +L    +  +       I     L+ L + AA     I      +  +S LQ L+
Sbjct: 42  GRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELT 101

Query: 179 LGYNKLLRAGNLDWIS-QLFSLRYLDLSSCNLSKSTDWLQEV--DKIPSLKTLYLEQCDL 235
           L   ++        +      L  L+L + + +    WL E+     P LK L + Q   
Sbjct: 102 LENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHS 161

Query: 236 QLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSD 295
                       +   P+L TL LS N                   P    +L+ L L +
Sbjct: 162 LNFS-----CEQVRVFPALSTLDLSDNPELGERGLISALC------PLKFPTLQVLALRN 210

Query: 296 NE---LDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKH 352
                  G          +L+GL L  NSL            S L               
Sbjct: 211 AGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLN-------------- 256

Query: 353 FSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSN 412
              L++S  G+   +P        KL+ L+ S+N++  R P+    +  + +  + +  N
Sbjct: 257 --SLNLSFTGLK-QVP---KGLPAKLSVLDLSYNRLD-RNPS-PDELPQVGN--LSLKGN 306

Query: 413 HLEGP 417
                
Sbjct: 307 PFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 77.2 bits (190), Expect = 2e-15
 Identities = 51/280 (18%), Positives = 87/280 (31%), Gaps = 33/280 (11%)

Query: 291 LTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQ 350
           L   D E D            L+ L++R   +   I            +           
Sbjct: 49  LKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGL----------- 97

Query: 351 KHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPG---I 407
           +  ++ ++   G +   P     T   L  LN  +         +++ +     PG   +
Sbjct: 98  QELTLENLEVTGTAP--PPLLEATGPDLNILNLRNVSWAT-RDAWLAELQQWLKPGLKVL 154

Query: 408 DISSNHLEGPSPSLPSNAF---YIDLSKNKFSGPISF---LCSFSGQNLVYLDLSSNL-- 459
            I+  H    S            +DLS N   G       LC      L  L L +    
Sbjct: 155 SIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGME 214

Query: 460 -LSGKLPDCWLQFNMLRILNLANNNFSGKIPN-SCGYLQKMLTLSLHHNNFSGELPSLLK 517
             SG           L+ L+L++N+        SC +  ++ +L+L       ++P  L 
Sbjct: 215 TPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGL- 272

Query: 518 NFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRF 557
               L V+ L  N +  N        L  +  L L+ N F
Sbjct: 273 -PAKLSVLDLSYNRLDRNPSPD---ELPQVGNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 74.9 bits (184), Expect = 1e-14
 Identities = 55/314 (17%), Positives = 94/314 (29%), Gaps = 37/314 (11%)

Query: 132 FNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAGNLD 191
           FN    + + ++ G  S    L              +     L+ L++   ++       
Sbjct: 28  FNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFG 87

Query: 192 WISQL--FSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLN 249
            +  L    L+ L L +  ++ +          P L  L L       +           
Sbjct: 88  ALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQW- 146

Query: 250 SSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIP----KF 305
             P L+ L ++  +        +              +L TL LSDN   GE        
Sbjct: 147 LKPGLKVLSIAQAHSLNFSCEQVRV----------FPALSTLDLSDNPELGERGLISALC 196

Query: 306 FQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAGISD 365
                 L+ L+LR   +E   S    +  +           LQ       LD+S   + D
Sbjct: 197 PLKFPTLQVLALRNAGME-TPSGVCSALAAARVQ-------LQ------GLDLSHNSLRD 242

Query: 366 SIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEG-PSPSLPSN 424
           +      D   +L  LN S   +        + + +L     D+S N L+  PSP     
Sbjct: 243 AAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKLSVL-----DLSYNRLDRNPSPDELPQ 297

Query: 425 AFYIDLSKNKFSGP 438
              + L  N F   
Sbjct: 298 VGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 74.9 bits (184), Expect = 1e-14
 Identities = 40/227 (17%), Positives = 78/227 (34%), Gaps = 23/227 (10%)

Query: 375 SHKLADLNFSHNQMTGRFPNYISSMFILESPGI---DISSNHLEGPSPSLPSNAF----- 426
           S  L  L     ++  R      ++ +L   G+    + +  + G +P     A      
Sbjct: 67  SLSLKRLTVRAARIPSRILF--GALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLN 124

Query: 427 YIDLSKNKFSGPISF---LCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNN 483
            ++L    ++   ++   L  +    L  L ++         +    F  L  L+L++N 
Sbjct: 125 ILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNP 184

Query: 484 FSGKIPNSC----GYLQKMLTLSLHHNNF---SGELPSLLKNFTHLRVVALEENSISGNI 536
             G+              +  L+L +      SG   +L      L+ + L  NS+    
Sbjct: 185 ELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAA 244

Query: 537 PAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISG 583
            A   +    L  L+L       ++P  L   A + +LDLS N +  
Sbjct: 245 GAPSCDWPSQLNSLNLSFTGLK-QVPKGL--PAKLSVLDLSYNRLDR 288

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 74.5 bits (183), Expect = 1e-14
 Identities = 52/300 (17%), Positives = 95/300 (31%), Gaps = 50/300 (16%)

Query: 424 NAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQF---NMLRILNLA 480
           +  Y+    +  +    F       +L  L + +  +  ++    L+    + L+ L L 
Sbjct: 44  SLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLE 103

Query: 481 NNNFSGKIPNSCG--YLQKMLTLSLHHNNFSGELPSLLKNF----THLRVVALEENSISG 534
           N   +G  P          +  L+L + +++     L +        L+V+++ +     
Sbjct: 104 NLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSL- 162

Query: 535 NIPAWIGESLLNLVVLDLRSNRFYGKIPF----QLCHLADIQILDLSLNNISGNIPKCFN 590
           N           L  LDL  N   G+              +Q+L L    +      C  
Sbjct: 163 NFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSA 222

Query: 591 NFTAMTQER----SYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLV 646
              A  Q +    S+NS       A  + +   P  +                       
Sbjct: 223 LAAARVQLQGLDLSHNS----LRDAAGAPSCDWPSQL----------------------- 255

Query: 647 KSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSG 706
            S++LS   L  +VP+ +     L  L+LS N L     P   +L  +  L L  N F  
Sbjct: 256 NSLNLSFTGL-KQVPKGL--PAKLSVLDLSYNRLDR--NPSPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 73.0 bits (179), Expect = 5e-14
 Identities = 60/345 (17%), Positives = 94/345 (27%), Gaps = 73/345 (21%)

Query: 167 LLGNLSRLQYLSLGYNKLLRAGNLDWISQLFSLRYLDLSSCNLS-KSTDWLQEVDKIPSL 225
           L G    L+YL    +     G    I +  SL+ L + +  +  +       V  I  L
Sbjct: 38  LYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGL 97

Query: 226 KTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPM 285
           + L LE  ++              + P L  L L  N   A+   WL  +          
Sbjct: 98  QELTLENLEVT---GTAPPPLLEATGPDLNILNLR-NVSWATRDAWLAELQQWLKP---- 149

Query: 286 ISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPK 345
             L+ L+++         +  +    L  L L  N   G                     
Sbjct: 150 -GLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGL----------------- 191

Query: 346 WLQTQKHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESP 405
                            IS   P  F      L  L   +  M        S++      
Sbjct: 192 -----------------ISALCPLKFP----TLQVLALRNAGME-TPSGVCSALA----- 224

Query: 406 GIDISSNHLEGPSPSLPSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLP 465
                         +       +DLS N                L  L+LS   L  ++P
Sbjct: 225 --------------AARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVP 269

Query: 466 DCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSG 510
                   L +L+L+ N      P+    L ++  LSL  N F  
Sbjct: 270 KGLPA--KLSVLDLSYNRLDR-NPSPDE-LPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 67.2 bits (164), Expect = 4e-12
 Identities = 47/226 (20%), Positives = 70/226 (30%), Gaps = 28/226 (12%)

Query: 108 NASLRGTLNPALLKLHYLRHLDLSFNNFSGSQIPMFIGSLS-----KLEYLDLFAASFSG 162
           N  + GT  P LL+        L+  N S +    ++  L       L+ L +  A    
Sbjct: 104 NLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLN 163

Query: 163 PIPPLLGNLSRLQYLSLGYNKLLRAGNLDWI---SQLFSLRYLDLSSCNLSK-STDWLQE 218
                +     L  L L  N  L    L       +  +L+ L L +  +   S      
Sbjct: 164 FSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSAL 223

Query: 219 VDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSI 278
                 L+ L L    L+       S         L +L LS+  L   +   L      
Sbjct: 224 AAARVQLQGLDLSHNSLRDAA-GAPSCDWP---SQLNSLNLSFTGLK-QVPKGLPA---- 274

Query: 279 PDAPGPMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEG 324
                    L  L LS N LD   P     + ++  LSL+GN    
Sbjct: 275 --------KLSVLDLSYNRLD-RNP-SPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 54.5 bits (131), Expect = 5e-08
 Identities = 41/254 (16%), Positives = 68/254 (26%), Gaps = 59/254 (23%)

Query: 494 YLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGE--SLLNLVVLD 551
           YL K +        F+  + SL      L+ + +    I   I         +  L  L 
Sbjct: 47  YLLKRVDTEADLGQFTDIIKSL-----SLKRLTVRAARIPSRILFGALRVLGISGLQELT 101

Query: 552 LRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYA 611
           L +    G  P  L       +  L+L N+S                      A    + 
Sbjct: 102 LENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR--------------DAWLAELQQWL 147

Query: 612 VPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLI 671
            P                                +K + ++         E++     L 
Sbjct: 148 KPG-------------------------------LKVLSIAQAHSLNFSCEQVRVFPALS 176

Query: 672 GLNLSRNNLTGYITPKI----GQLQSLDFLDLSRNQF---SGGIPSSLSQVNRLSVMDLS 724
            L+LS N   G           +  +L  L L        SG   +  +   +L  +DLS
Sbjct: 177 TLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLS 236

Query: 725 HNNLSGKIPTGTQL 738
           HN+L       +  
Sbjct: 237 HNSLRDAAGAPSCD 250

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 79.4 bits (195), Expect = 2e-15
 Identities = 56/321 (17%), Positives = 103/321 (32%), Gaps = 61/321 (19%)

Query: 119 LLKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFA---ASFSGPIPPLLGNLSRLQ 175
                     +L   + +     +    L+ ++ +        S  G     +  L  + 
Sbjct: 17  DDAFAETIKDNLKKKSVTD---AVTQNELNSIDQIIANNSDIKSVQG-----IQYLPNVT 68

Query: 176 YLSLGYNKLLRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDL 235
            L L  NKL     L   + L +L +L L    +      L  +  +  LK+L LE   +
Sbjct: 69  KLFLNGNKLTDIKPL---TNLKNLGWLFLDENKIKD----LSSLKDLKKLKSLSLEHNGI 121

Query: 236 QLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSD 295
                     + L   P LE+L L  N +T        +++ +      +  L TL+L D
Sbjct: 122 -------SDINGLVHLPQLESLYLGNNKIT--------DITVL----SRLTKLDTLSLED 162

Query: 296 NELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSV 355
           N++  +I      + KL+ L L  N +         S+   L             K+  V
Sbjct: 163 NQIS-DIV-PLAGLTKLQNLYLSKNHI---------SDLRALA----------GLKNLDV 201

Query: 356 LDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLE 415
           L++ S    +   +  S+       +  +   +    P  IS     E P +        
Sbjct: 202 LELFSQECLNKPINHQSNLVV-PNTVKNTDGSL--VTPEIISDDGDYEKPNVKWHLPEFT 258

Query: 416 GPSPSLPSNAFYIDLSKNKFS 436
                +      I  +K +F 
Sbjct: 259 NEVSFIFYQPVTIGKAKARFH 279

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 74.8 bits (183), Expect = 6e-14
 Identities = 40/206 (19%), Positives = 76/206 (36%), Gaps = 33/206 (16%)

Query: 117 PALLKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQY 176
               +L+ +  +  + ++     +   I  L  +  L L     +  I P L NL  L +
Sbjct: 37  VTQNELNSIDQIIANNSDI--KSVQ-GIQYLPNVTKLFLNGNKLTD-IKP-LTNLKNLGW 91

Query: 177 LSLGYNKLLRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQ 236
           L L  NK+    +L  +  L  L+ L L    +S     +  +  +P L++LYL    + 
Sbjct: 92  LFLDENKIK---DLSSLKDLKKLKSLSLEHNGISD----INGLVHLPQLESLYLGNNKIT 144

Query: 237 LQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDN 296
                    + L+    L+TL L  N ++        ++  +      +  L+ L LS N
Sbjct: 145 -------DITVLSRLTKLDTLSLEDNQIS--------DIVPLAG----LTKLQNLYLSKN 185

Query: 297 ELDGEIPKFFQNMFKLEGLSLRGNSL 322
            +     +    +  L+ L L     
Sbjct: 186 HI--SDLRALAGLKNLDVLELFSQEC 209

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 68.6 bits (167), Expect = 5e-12
 Identities = 55/346 (15%), Positives = 108/346 (31%), Gaps = 102/346 (29%)

Query: 168 LGNLSRLQYLSLGYNKLLRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKT 227
               +     +L    +    +    ++L S+  +  ++ ++      +Q +  +P++  
Sbjct: 17  DDAFAETIKDNLKKKSV---TDAVTQNELNSIDQIIANNSDIKS----VQGIQYLPNVTK 69

Query: 228 LYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMIS 287
           L+L    L            L +  +L  L L  N +         ++SS+ D    +  
Sbjct: 70  LFLNGNKL-------TDIKPLTNLKNLGWLFLDENKIK--------DLSSLKD----LKK 110

Query: 288 LRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWL 347
           L++L+L  N +  +I     ++ +LE L L  N +  +      +  S L          
Sbjct: 111 LKSLSLEHNGIS-DIN-GLVHLPQLESLYLGNNKITDI------TVLSRLT--------- 153

Query: 348 QTQKHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGI 407
                                        KL  L+   NQ        IS +  L     
Sbjct: 154 -----------------------------KLDTLSLEDNQ--------ISDIVPLAG--- 173

Query: 408 DISSNHLEGPSPSLPSNAFYIDLSKNKFSGPISFLCSFSG-QNLVYLDLSSNLLSGKLPD 466
                 L+            + LSKN     IS L + +G +NL  L+L S     K  +
Sbjct: 174 ---LTKLQ-----------NLYLSKNH----ISDLRALAGLKNLDVLELFSQECLNKPIN 215

Query: 467 CWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGEL 512
                 +   +   + +       S     +   +  H   F+ E+
Sbjct: 216 HQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEV 261

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 63.6 bits (154), Expect = 2e-10
 Identities = 51/284 (17%), Positives = 98/284 (34%), Gaps = 29/284 (10%)

Query: 351 KHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESP----G 406
                 ++    ++D++    ++ +  +  +  +++         I S+  ++       
Sbjct: 21  AETIKDNLKKKSVTDAVT--QNELN-SIDQIIANNSD--------IKSVQGIQYLPNVTK 69

Query: 407 IDISSNHLEGPSP-SLPSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLP 465
           + ++ N L    P +   N  ++ L +NK    +S L       L  L L  N +S  + 
Sbjct: 70  LFLNGNKLTDIKPLTNLKNLGWLFLDENKIKD-LSSLKDLK--KLKSLSLEHNGIS-DIN 125

Query: 466 DCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVV 525
                   L  L L NN  +  I      L K+ TLSL  N  S ++  L    T L+ +
Sbjct: 126 GLV-HLPQLESLYLGNNKIT-DITVLSR-LTKLDTLSLEDNQIS-DIVPL-AGLTKLQNL 180

Query: 526 ALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNI 585
            L +N IS ++ A     L NL VL+L S     K      +L     +  +  ++    
Sbjct: 181 YLSKNHIS-DLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPE 237

Query: 586 PKC-FNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIV 628
                 ++     +          S+      T+      F   
Sbjct: 238 IISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGR 281

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 56.7 bits (136), Expect = 2e-08
 Identities = 42/255 (16%), Positives = 86/255 (33%), Gaps = 16/255 (6%)

Query: 117 PALLKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQY 176
            +L  L  L+ L L  N  S   I   +  L +LE L L     +      L  L++L  
Sbjct: 103 SSLKDLKKLKSLSLEHNGIS--DIN-GLVHLPQLESLYLGNNKITDITV--LSRLTKLDT 157

Query: 177 LSLGYNKLLRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQ 236
           LSL  N++    ++  ++ L  L+ L LS  ++S     L+ +  + +L  L L   +  
Sbjct: 158 LSLEDNQI---SDIVPLAGLTKLQNLYLSKNHISD----LRALAGLKNLDVLELFSQECL 210

Query: 237 LQPTIHRSFSHLNSSPSLETL-GLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSD 295
            +P  H   S+L    +++   G        S        +     P     +  +    
Sbjct: 211 NKPINH--QSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQP 268

Query: 296 NELDGEIPKFFQNMFK-LEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFS 354
             +     +F   + + L+ +      ++G + +      + +       K     K + 
Sbjct: 269 VTIGKAKARFHGRVTQPLKEVYTVSYDVDGTVIKTKVEAGTRITAPKPPTKQGYVFKGWY 328

Query: 355 VLDISSAGISDSIPD 369
                    + +   
Sbjct: 329 TEKNGGHEWNFNTDY 343

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 54.0 bits (129), Expect = 2e-07
 Identities = 41/214 (19%), Positives = 78/214 (36%), Gaps = 42/214 (19%)

Query: 516 LKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILD 575
              F       L++ S++  +       L ++  +   ++     +   + +L ++  L 
Sbjct: 17  DDAFAETIKDNLKKKSVTDAVTQ---NELNSIDQIIANNSDI-KSVQG-IQYLPNVTKLF 71

Query: 576 LSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGS 635
           L+ N ++ +I K   N   +      + + I                   D+  L     
Sbjct: 72  LNGNKLT-DI-KPLTNLKNLG-WLFLDENKIK------------------DLSSL----- 105

Query: 636 EYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLD 695
                  L  +KS+ L  N +       ++ L  L  L L  N +T  IT  + +L  LD
Sbjct: 106 -----KDLKKLKSLSLEHNGI--SDINGLVHLPQLESLYLGNNKITD-ITV-LSRLTKLD 156

Query: 696 FLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLS 729
            L L  NQ S      L+ + +L  + LS N++S
Sbjct: 157 TLSLEDNQISD--IVPLAGLTKLQNLYLSKNHIS 188

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 50.9 bits (121), Expect = 1e-06
 Identities = 44/243 (18%), Positives = 81/243 (33%), Gaps = 52/243 (21%)

Query: 495 LQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSIS--GNIPAWIGESLLNLVVLDL 552
             + +  +L   + +  +         +  +    + I     I     + L N+  L L
Sbjct: 20  FAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQGI-----QYLPNVTKLFL 72

Query: 553 RSNRFYGKIP--FQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSY 610
             N    K+     L +L ++  L L  N I  ++     +   +    S   + I+   
Sbjct: 73  NGN----KLTDIKPLTNLKNLGWLFLDENKIK-DLS-SLKDLKKLK-SLSLEHNGIS--- 122

Query: 611 AVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGL 670
                          DI  L            L  ++S+ L +NK+       +  L  L
Sbjct: 123 ---------------DINGL----------VHLPQLESLYLGNNKI--TDITVLSRLTKL 155

Query: 671 IGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSG 730
             L+L  N ++  I P +  L  L  L LS+N  S     +L+ +  L V++L       
Sbjct: 156 DTLSLEDNQIS-DIVP-LAGLTKLQNLYLSKNHIS--DLRALAGLKNLDVLELFSQECLN 211

Query: 731 KIP 733
           K  
Sbjct: 212 KPI 214

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 74.0 bits (182), Expect = 2e-14
 Identities = 31/206 (15%), Positives = 78/206 (37%), Gaps = 33/206 (16%)

Query: 117 PALLKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQY 176
             +  L+ L  L+L  N    + +   + +L+K+  L+L            +  L  ++ 
Sbjct: 57  EGVQYLNNLIGLELKDNQI--TDLA-PLKNLTKITELELSGNPLKNVSA--IAGLQSIKT 111

Query: 177 LSLGYNKLLRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQ 236
           L L   ++    ++  ++ L +L+ L L    ++     +  +  + +L+ L +    + 
Sbjct: 112 LDLTSTQI---TDVTPLAGLSNLQVLYLDLNQITN----ISPLAGLTNLQYLSIGNAQV- 163

Query: 237 LQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDN 296
                    + L +   L TL    N ++        ++S +      + +L  + L +N
Sbjct: 164 ------SDLTPLANLSKLTTLKADDNKIS--------DISPLAS----LPNLIEVHLKNN 205

Query: 297 ELDGEIPKFFQNMFKLEGLSLRGNSL 322
           ++    P    N   L  ++L   ++
Sbjct: 206 QISDVSP--LANTSNLFIVTLTNQTI 229

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 70.5 bits (173), Expect = 3e-13
 Identities = 42/223 (18%), Positives = 88/223 (39%), Gaps = 33/223 (14%)

Query: 117 PALLKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQY 176
                L  +  L       +  +    +  L+ L  L+L     +  + P L NL+++  
Sbjct: 35  VTQADLDGITTLSAFGTGVTTIE---GVQYLNNLIGLELKDNQITD-LAP-LKNLTKITE 89

Query: 177 LSLGYNKLLRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQ 236
           L L  N L    N+  I+ L S++ LDL+S  ++     +  +  + +L+ LYL+   + 
Sbjct: 90  LELSGNPL---KNVSAIAGLQSIKTLDLTSTQITD----VTPLAGLSNLQVLYLDLNQI- 141

Query: 237 LQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDN 296
                  + S L    +L+ L +    ++        +++ +      +  L TL   DN
Sbjct: 142 ------TNISPLAGLTNLQYLSIGNAQVS--------DLTPL----ANLSKLTTLKADDN 183

Query: 297 ELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKM 339
           ++  +I     ++  L  + L+ N +  V      SN   + +
Sbjct: 184 KIS-DIS-PLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTL 224

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 69.7 bits (171), Expect = 6e-13
 Identities = 48/284 (16%), Positives = 100/284 (35%), Gaps = 55/284 (19%)

Query: 119 LLKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLS 178
              L     +    +N +     +    L  +  L  F    +  I  +   L+ L  L 
Sbjct: 15  DPALANAIKIAAGKSNVTD---TVTQADLDGITTLSAFGTGVTT-IEGV-QYLNNLIGLE 69

Query: 179 LGYNKLLRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQ 238
           L  N++    +L  +  L  +  L+LS   L      +  +  + S+KTL L    +   
Sbjct: 70  LKDNQI---TDLAPLKNLTKITELELSGNPLKN----VSAIAGLQSIKTLDLTSTQI--- 119

Query: 239 PTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNEL 298
                  + L    +L+ L L  N +T        N+S +      + +L+ L++ + ++
Sbjct: 120 ----TDVTPLAGLSNLQVLYLDLNQIT--------NISPLAG----LTNLQYLSIGNAQV 163

Query: 299 DGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDI 358
               P    N+ KL  L    N +  +      ++   L                  + +
Sbjct: 164 SDLTP--LANLSKLTTLKADDNKISDI---SPLASLPNLI----------------EVHL 202

Query: 359 SSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFIL 402
            +  ISD  P   ++TS  L  +  ++  +T +   Y +++ + 
Sbjct: 203 KNNQISDVSP--LANTS-NLFIVTLTNQTITNQPVFYNNNLVVP 243

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 68.9 bits (169), Expect = 1e-12
 Identities = 43/206 (20%), Positives = 80/206 (38%), Gaps = 31/206 (15%)

Query: 117 PALLKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQY 176
             L  L  +  L+LS N      +   I  L  ++ LDL +   +   P  L  LS LQ 
Sbjct: 79  APLKNLTKITELELSGNPLK--NVS-AIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQV 133

Query: 177 LSLGYNKLLRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQ 236
           L L  N++    N+  ++ L +L+YL + +  +S     L  +  +  L TL  +   + 
Sbjct: 134 LYLDLNQI---TNISPLAGLTNLQYLSIGNAQVSD----LTPLANLSKLTTLKADDNKI- 185

Query: 237 LQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDN 296
                    S L S P+L  + L  N ++        +VS +        +L  +TL++ 
Sbjct: 186 ------SDISPLASLPNLIEVHLKNNQIS--------DVSPL----ANTSNLFIVTLTNQ 227

Query: 297 ELDGEIPKFFQNMFKLEGLSLRGNSL 322
            +  +   +  N+     +     + 
Sbjct: 228 TITNQPVFYNNNLVVPNVVKGPSGAP 253

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 58.5 bits (142), Expect = 3e-09
 Identities = 49/265 (18%), Positives = 104/265 (39%), Gaps = 36/265 (13%)

Query: 364 SDSIPDWFSDTS-HKLADLNFSHNQMTGRFP--------------NYISSMFILESP--- 405
             +I   F D +      +    + +T                    ++++  ++     
Sbjct: 6   PTAINVIFPDPALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEGVQYLNNL 65

Query: 406 -GIDISSNHLEGPSP-SLPSNAFYIDLSKNKFSGPISFLCSFSG-QNLVYLDLSSNLLSG 462
            G+++  N +   +P    +    ++LS N     +  + + +G Q++  LDL+S  ++ 
Sbjct: 66  IGLELKDNQITDLAPLKNLTKITELELSGNP----LKNVSAIAGLQSIKTLDLTSTQITD 121

Query: 463 KLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHL 522
             P   L    L++L L  N  +  I    G L  +  LS+ +   S +L  L  N + L
Sbjct: 122 VTPLAGLS--NLQVLYLDLNQIT-NISPLAG-LTNLQYLSIGNAQVS-DLTPL-ANLSKL 175

Query: 523 RVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNIS 582
             +  ++N IS +I      SL NL+ + L++N+     P    + +++ I+ L+   I+
Sbjct: 176 TTLKADDNKIS-DISPL--ASLPNLIEVHLKNNQISDVSPLA--NTSNLFIVTLTNQTIT 230

Query: 583 GNIPKCFNNFTAMTQERSYNSSAIT 607
                  NN       +  + + I 
Sbjct: 231 NQPVFYNNNLVVPNVVKGPSGAPIA 255

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 50.8 bits (122), Expect = 9e-07
 Identities = 40/256 (15%), Positives = 92/256 (35%), Gaps = 46/256 (17%)

Query: 474 LRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSIS 533
              +    +N +  +  +   L  + TLS      +  +  + +   +L  + L++N I+
Sbjct: 21  AIKIAAGKSNVTDTVTQAD--LDGITTLSAFGTGVT-TIEGV-QYLNNLIGLELKDNQIT 76

Query: 534 GNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFT 593
            ++     ++L  +  L+L  N    K    +  L  I+ LDL+   I+   P      +
Sbjct: 77  -DLAPL--KNLTKITELELSGNPL--KNVSAIAGLQSIKTLDLTSTQITDVTP--LAGLS 129

Query: 594 AMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSS 653
            +      + + IT                  +I  L            L  ++ + + +
Sbjct: 130 NLQ-VLYLDLNQIT------------------NISPLA----------GLTNLQYLSIGN 160

Query: 654 NKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLS 713
            ++       + +L  L  L    N ++      +  L +L  + L  NQ S    S L+
Sbjct: 161 AQV--SDLTPLANLSKLTTLKADDNKISDI--SPLASLPNLIEVHLKNNQISD--VSPLA 214

Query: 714 QVNRLSVMDLSHNNLS 729
             + L ++ L++  ++
Sbjct: 215 NTSNLFIVTLTNQTIT 230

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 49.3 bits (118), Expect = 3e-06
 Identities = 37/215 (17%), Positives = 81/215 (37%), Gaps = 44/215 (20%)

Query: 516 LKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILD 575
                +   +A  +++++  +       L  +  L          I   + +L ++  L+
Sbjct: 15  DPALANAIKIAAGKSNVTDTVTQ---ADLDGITTLSAFGTGV-TTIEG-VQYLNNLIGLE 69

Query: 576 LSLNNISGNIPKCFNNFTAMTQ-ERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKG 634
           L  N I+ ++     N T +T+ E S N   +                   ++  +    
Sbjct: 70  LKDNQIT-DLA-PLKNLTKITELELSGNP--LK------------------NVSAI---- 103

Query: 635 SEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSL 694
                   L  +K++DL+S ++       +  L  L  L L  N +T  I+P +  L +L
Sbjct: 104 ------AGLQSIKTLDLTSTQITD--VTPLAGLSNLQVLYLDLNQITN-ISP-LAGLTNL 153

Query: 695 DFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLS 729
            +L +   Q S    + L+ +++L+ +    N +S
Sbjct: 154 QYLSIGNAQVSD--LTPLANLSKLTTLKADDNKIS 186

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 69.2 bits (170), Expect = 1e-13
 Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 14/145 (9%)

Query: 121 KLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLG 180
             H ++ L ++  + +       I  LS LE L +     +    P L  L+ L  L + 
Sbjct: 64  YAHNIKDLTINNIHATNYN---PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120

Query: 181 YNKLLRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPT 240
           ++       L  I+ L  +  +DLS          +  +  +P LK+L ++   +     
Sbjct: 121 HSA-HDDSILTKINTLPKVNSIDLSYNGAITD---IMPLKTLPELKSLNIQFDGV----- 171

Query: 241 IHRSFSHLNSSPSLETLGLSYNNLT 265
               +  +   P L  L      + 
Sbjct: 172 --HDYRGIEDFPKLNQLYAFSQTIG 194

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 65.4 bits (160), Expect = 3e-12
 Identities = 30/181 (16%), Positives = 66/181 (36%), Gaps = 26/181 (14%)

Query: 121 KLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLG 180
           +++ L ++ L+  N +       I     ++ L +     +   P  +  LS L+ L + 
Sbjct: 42  QMNSLTYITLANINVTDLT---GIEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIM 96

Query: 181 YNKLLRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPT 240
               + +  +  +S L SL  LD+S      S   L +++ +P + ++ L          
Sbjct: 97  GKD-VTSDKIPNLSGLTSLTLLDISHSAHDDSI--LTKINTLPKVNSIDLSYNGAI---- 149

Query: 241 IHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDG 300
                  L + P L++L + ++ +         +   I D       L  L      + G
Sbjct: 150 --TDIMPLKTLPELKSLNIQFDGVH--------DYRGIED----FPKLNQLYAFSQTIGG 195

Query: 301 E 301
           +
Sbjct: 196 K 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 64.6 bits (158), Expect = 5e-12
 Identities = 28/177 (15%), Positives = 64/177 (36%), Gaps = 25/177 (14%)

Query: 144 IGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAGNLDWISQLFSLRYLD 203
              ++ L Y+ L   + +  +  +      ++ L++         N + IS L +L  L 
Sbjct: 40  EAQMNSLTYITLANINVTD-LTGI-EYAHNIKDLTINNIHA---TNYNPISGLSNLERLR 94

Query: 204 LSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNN 263
           +   ++  ++D +  +  + SL  L +               + +N+ P + ++ LSYN 
Sbjct: 95  IMGKDV--TSDKIPNLSGLTSLTLLDISHSAHD-----DSILTKINTLPKVNSIDLSYNG 147

Query: 264 LTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGN 320
               I P L            +  L++L +  + +        ++  KL  L     
Sbjct: 148 AITDIMP-LKT----------LPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQ 191

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 64.2 bits (157), Expect = 7e-12
 Identities = 21/114 (18%), Positives = 46/114 (40%), Gaps = 7/114 (6%)

Query: 118 ALLKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYL 177
            +  L  L  L +   + +  +IP  +  L+ L  LD+  ++    I   +  L ++  +
Sbjct: 83  PISGLSNLERLRIMGKDVTSDKIP-NLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSI 141

Query: 178 SLGYNKLLRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLE 231
            L YN  +   ++  +  L  L+ L++    +       + ++  P L  LY  
Sbjct: 142 DLSYNGAIT--DIMPLKTLPELKSLNIQFDGVHD----YRGIEDFPKLNQLYAF 189

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 61.5 bits (150), Expect = 6e-11
 Identities = 39/221 (17%), Positives = 72/221 (32%), Gaps = 46/221 (20%)

Query: 170 NLSRLQYLSLGYNKLLRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLY 229
                    LG +      N+   +Q+ SL Y+ L++ N++     L  ++   ++K L 
Sbjct: 21  TFKAYLNGLLGQSST---ANIT-EAQMNSLTYITLANINVTD----LTGIEYAHNIKDLT 72

Query: 230 LEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLR 289
           +             +++ ++   +LE L +   ++T+   P L            + SL 
Sbjct: 73  INNIHA-------TNYNPISGLSNLERLRIMGKDVTSDKIPNLSG----------LTSLT 115

Query: 290 TLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQT 349
            L +S +  D  I      + K+  + L  N     I          LK           
Sbjct: 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELK----------- 162

Query: 350 QKHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTG 390
                 L+I   G+ D       D   KL  L      + G
Sbjct: 163 -----SLNIQFDGVHDYRG--IEDFP-KLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 56.9 bits (138), Expect = 3e-09
 Identities = 20/162 (12%), Positives = 53/162 (32%), Gaps = 19/162 (11%)

Query: 427 YIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLS-----GKLPDCWLQFNMLRILNLAN 481
           YI L+    +  ++ +      N+  L +++   +       L +       L  L +  
Sbjct: 48  YITLANINVTD-LTGIEYAH--NIKDLTINNIHATNYNPISGLSN-------LERLRIMG 97

Query: 482 NNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIG 541
            + +     +   L  +  L + H+     + + +     +  + L  N    +I     
Sbjct: 98  KDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPL-- 155

Query: 542 ESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISG 583
           ++L  L  L+++ +  +     +      +  L      I G
Sbjct: 156 KTLPELKSLNIQFDGVHDYRGIE--DFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 55.4 bits (134), Expect = 9e-09
 Identities = 26/236 (11%), Positives = 73/236 (30%), Gaps = 62/236 (26%)

Query: 495 LQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRS 554
            +  L   L  ++ +    + + + T++    L   +++ ++     E   N+  L + +
Sbjct: 22  FKAYLNGLLGQSSTANITEAQMNSLTYIT---LANINVT-DLTGI--EYAHNIKDLTINN 75

Query: 555 NRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPS 614
                  P  +  L++++ L +   +++ +     +  T++T                  
Sbjct: 76  IHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT------------------ 115

Query: 615 RTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLN 674
                                             +D+S +     +  +I  L  +  ++
Sbjct: 116 ---------------------------------LLDISHSAHDDSILTKINTLPKVNSID 142

Query: 675 LSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSG 730
           LS N     I P +  L  L  L++  +         +    +L+ +      + G
Sbjct: 143 LSYNGAITDIMP-LKTLPELKSLNIQFDGVHD--YRGIEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 51.9 bits (125), Expect = 1e-07
 Identities = 23/94 (24%), Positives = 37/94 (39%), Gaps = 5/94 (5%)

Query: 117 PALLKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQY 176
           P L  L  L  LD+S +    S +   I +L K+  +DL        I P L  L  L+ 
Sbjct: 106 PNLSGLTSLTLLDISHSAHDDSILT-KINTLPKVNSIDLSYNGAITDIMP-LKTLPELKS 163

Query: 177 LSLGYNKLLRAGNLDWISQLFSLRYLDLSSCNLS 210
           L++ ++ +    +   I     L  L   S  + 
Sbjct: 164 LNIQFDGV---HDYRGIEDFPKLNQLYAFSQTIG 194

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 51.5 bits (124), Expect = 2e-07
 Identities = 19/86 (22%), Positives = 38/86 (44%), Gaps = 2/86 (2%)

Query: 647 KSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSG 706
           K + +++          I  L  L  L +   ++T    P +  L SL  LD+S +    
Sbjct: 69  KDLTINNIHA--TNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDD 126

Query: 707 GIPSSLSQVNRLSVMDLSHNNLSGKI 732
            I + ++ + +++ +DLS+N     I
Sbjct: 127 SILTKINTLPKVNSIDLSYNGAITDI 152

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 47.6 bits (114), Expect = 3e-06
 Identities = 19/103 (18%), Positives = 42/103 (40%), Gaps = 8/103 (7%)

Query: 646 VKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFS 705
           +  + L++  +       I     +  L ++  + T    P I  L +L+ L +     +
Sbjct: 46  LTYITLANINV--TDLTGIEYAHNIKDLTINNIHATN-YNP-ISGLSNLERLRIMGKDVT 101

Query: 706 GGIPSSLSQVNRLSVMDLSHNNLSGKIPTG----TQLQSFNAS 744
                +LS +  L+++D+SH+     I T      ++ S + S
Sbjct: 102 SDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLS 144

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 45.7 bits (109), Expect = 1e-05
 Identities = 21/116 (18%), Positives = 50/116 (43%), Gaps = 5/116 (4%)

Query: 470 QFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEE 529
           Q N L  + LAN N +  +     Y   +  L++++ + +    + +   ++L  + +  
Sbjct: 42  QMNSLTYITLANINVT-DLTG-IEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMG 97

Query: 530 NSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNI 585
             ++ +    +   L +L +LD+  +     I  ++  L  +  +DLS N    +I
Sbjct: 98  KDVTSDKIPNL-SGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI 152

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 44.6 bits (106), Expect = 4e-05
 Identities = 31/237 (13%), Positives = 61/237 (25%), Gaps = 64/237 (27%)

Query: 472 NMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSL--LKNFTHLRVVALEE 529
                LN      S     +   +  +  ++L + N +     L  ++   +++ + +  
Sbjct: 21  TFKAYLNGLLGQSSTA-NITEAQMNSLTYITLANINVT----DLTGIEYAHNIKDLTINN 75

Query: 530 NSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCF 589
              +   P      L NL  L +            L  L  + +LD+S +    +I    
Sbjct: 76  IHATNYNPI---SGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKI 132

Query: 590 NNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSV 649
           N    +                                                    S+
Sbjct: 133 NTLPKVN---------------------------------------------------SI 141

Query: 650 DLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSG 706
           DLS N    ++   +  L  L  LN+  + +       I     L+ L        G
Sbjct: 142 DLSYNGAITDI-MPLKTLPELKSLNIQFDGVHD-YRG-IEDFPKLNQLYAFSQTIGG 195

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 70.0 bits (172), Expect = 1e-13
 Identities = 39/221 (17%), Positives = 77/221 (34%), Gaps = 28/221 (12%)

Query: 125 LRHLDLSFNNFSGSQIPM--FIGSLSKLEYLDLFAASFSGPIPP-LLGNLSRLQYLSLGY 181
            + L L   +     IP   F   L  +  + +        +      NLS++ ++ +  
Sbjct: 33  TQTLKLIETHLR--TIPSHAFSN-LPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN 89

Query: 182 NKLLRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLY-LEQCD-LQLQP 239
            + L   + D + +L  L++L + +  L        ++ K+ S    + LE  D   +  
Sbjct: 90  TRNLTYIDPDALKELPLLKFLGIFNTGLKM----FPDLTKVYSTDIFFILEITDNPYMTS 145

Query: 240 TIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELD 299
               +F  L +     TL L  N  T S+  + FN +           L  + L+ N+  
Sbjct: 146 IPVNAFQGLCN--ETLTLKLYNNGFT-SVQGYAFNGT----------KLDAVYLNKNKYL 192

Query: 300 GEIPKF-FQNMF-KLEGLSLRGNSLEGVISEHFFSNFSYLK 338
             I K  F  ++     L +   S+   +      +   L 
Sbjct: 193 TVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSKGLEHLKELI 232

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 56.2 bits (136), Expect = 8e-09
 Identities = 44/280 (15%), Positives = 89/280 (31%), Gaps = 79/280 (28%)

Query: 216 LQEVDKIP-SLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFN 274
           +Q +  +P S +TL L +  L+  P+   +FS+L   P++  + +S +     +    F 
Sbjct: 23  IQRIPSLPPSTQTLKLIETHLRTIPS--HAFSNL---PNISRIYVSIDVTLQQLESHSFY 77

Query: 275 VSSIPDAPGPMISLRTLTLSDNELDGEIPKF-FQNMFKLEGLSLRGNSLEGVISEHFFSN 333
                     +  +  + + +      I     + +  L+ L +    L+         +
Sbjct: 78  ---------NLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYS 128

Query: 334 FSYLKMGPHFPKWLQTQKHFSVLDISSAGISDSIP-DWFSDTSHKLADLNFSHNQMTGRF 392
                +                L+I+      SIP + F    ++   L   +N  T   
Sbjct: 129 TDIFFI----------------LEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT--- 169

Query: 393 PNYISSMFILESPGIDISSNHLEGPSPSLPSNAF------YIDLSKNKFSGPISFLC--S 444
                                      S+   AF       + L+KNK+   ++ +   +
Sbjct: 170 ---------------------------SVQGYAFNGTKLDAVYLNKNKY---LTVIDKDA 199

Query: 445 FSG--QNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANN 482
           F G       LD+S   ++  LP        L+ L   N 
Sbjct: 200 FGGVYSGPSLLDVSQTSVT-ALPS--KGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 47.3 bits (113), Expect = 7e-06
 Identities = 30/214 (14%), Positives = 65/214 (30%), Gaps = 38/214 (17%)

Query: 500 TLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYG 559
           TL L   +          N  ++  + +  +     + +    +L  +  +++R+ R   
Sbjct: 35  TLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT 94

Query: 560 KIP---FQLCHLADIQILDLSLNNISGNIP---KCFNNFTAMTQERSYNSSAITFSYAVP 613
            I     +   L  ++ L +    +    P   K ++       E + N           
Sbjct: 95  YIDPDALK--ELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDN----------- 140

Query: 614 SRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGL 673
              T +PV+ F  +   T                ++ L +N     V     +   L  +
Sbjct: 141 PYMTSIPVNAFQGLCNET---------------LTLKLYNNGF-TSVQGYAFNGTKLDAV 184

Query: 674 NLSRNNLTGYITPKI--GQLQSLDFLDLSRNQFS 705
            L++N     I      G       LD+S+   +
Sbjct: 185 YLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 46.9 bits (112), Expect = 9e-06
 Identities = 42/288 (14%), Positives = 85/288 (29%), Gaps = 79/288 (27%)

Query: 274 NVSSIPDAPGPMISLRTLTLSDNELDGEIPKF-FQNMFKLEGLSLRGNSLEGVISEHFFS 332
           ++  IP  P    S +TL L +  L   IP   F N+  +  + +  +     +  H F 
Sbjct: 22  DIQRIPSLP---PSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFY 77

Query: 333 NFSYLKMGPHFPKWLQTQKHFSVLDISSAGISDSIP-DWFSDTSHKLADLNFSHNQMTGR 391
           N S +                  ++I +      I  D   +    L  L   +  +   
Sbjct: 78  NLSKVT----------------HIEIRNTRNLTYIDPDALKELP-LLKFLGIFNTGLK-- 118

Query: 392 FPNYISSMFILESPGIDISSNHLEGPSPSLPSNAFYIDLSKNKFSGPISFLCSFSGQNLV 451
                                         P                      +S     
Sbjct: 119 ----------------------------MFPDLTK-----------------VYSTDIFF 133

Query: 452 YLDLSSNLLSGKLPDCWLQ--FNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFS 509
            L+++ N     +P    Q   N    L L NN F+  +        K+  + L+ N + 
Sbjct: 134 ILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYL 192

Query: 510 GELP--SLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSN 555
             +   +    ++   ++ + + S++  +P+   + L +L  L  R+ 
Sbjct: 193 TVIDKDAFGGVYSGPSLLDVSQTSVT-ALPS---KGLEHLKELIARNT 236

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 69.4 bits (170), Expect = 6e-13
 Identities = 44/183 (24%), Positives = 64/183 (34%), Gaps = 31/183 (16%)

Query: 118 ALLKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYL 177
            L+    L  L+L     +  ++ +  G+L  L  LDL        +P L   L  L  L
Sbjct: 50  TLMPYTRLTQLNLDRAELT--KLQVD-GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVL 105

Query: 178 SLGYNKL--LRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQE--VDKIPSLKTLYLEQC 233
            + +N+L  L  G L     L  L+ L L    L      L    +   P L+ L L   
Sbjct: 106 DVSFNRLTSLPLGALR---GLGELQELYLKGNELKT----LPPGLLTPTPKLEKLSLANN 158

Query: 234 DLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTL 293
           +L   P      + L    +L+TL L  N+L            +IP        L    L
Sbjct: 159 NLTELP--AGLLNGL---ENLDTLLLQENSLY-----------TIPKGFFGSHLLPFAFL 202

Query: 294 SDN 296
             N
Sbjct: 203 HGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 65.9 bits (161), Expect = 7e-12
 Identities = 47/189 (24%), Positives = 66/189 (34%), Gaps = 28/189 (14%)

Query: 150 LEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAGNLDWISQLFSLRYLDLSSCNL 209
              L L            L   +RL  L+L   +L     L     L  L  LDLS   L
Sbjct: 33  TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL---TKLQVDGTLPVLGTLDLSHNQL 89

Query: 210 SKSTDWLQEV-DKIPSLKTLYLEQCDLQ-LQPTIHRSFSHLNSSPSLETLGLSYNNLTAS 267
                 L  +   +P+L  L +    L  L          L     L+ L L  N L  +
Sbjct: 90  QS----LPLLGQTLPALTVLDVSFNRLTSLPLGA---LRGL---GELQELYLKGNELK-T 138

Query: 268 IYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIPK-FFQNMFKLEGLSLRGNSLEGVI 326
           + P L           P   L  L+L++N L  E+P      +  L+ L L+ NSL   I
Sbjct: 139 LPPGLLT---------PTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYT-I 187

Query: 327 SEHFFSNFS 335
            + FF +  
Sbjct: 188 PKGFFGSHL 196

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 52.0 bits (125), Expect = 3e-07
 Identities = 36/153 (23%), Positives = 58/153 (37%), Gaps = 12/153 (7%)

Query: 449 NLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNF 508
           +   L LS NLL        + +  L  LNL     + K+      L  + TL L HN  
Sbjct: 32  DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVDGT-LPVLGTLDLSHNQL 89

Query: 509 SGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIP---FQL 565
              LP L +    L V+ +  N ++ ++P      L  L  L L+ N     +P      
Sbjct: 90  Q-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNEL-KTLPPGLLT- 145

Query: 566 CHLADIQILDLSLNNISGNIPK-CFNNFTAMTQ 597
                ++ L L+ NN++  +P    N    +  
Sbjct: 146 -PTPKLEKLSLANNNLT-ELPAGLLNGLENLDT 176

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 51.3 bits (123), Expect = 5e-07
 Identities = 39/204 (19%), Positives = 65/204 (31%), Gaps = 36/204 (17%)

Query: 501 LSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGK 560
           L L  N       + L  +T L  + L+   ++  +      +L  L  LDL  N+    
Sbjct: 36  LHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQV--DGTLPVLGTLDLSHNQL-QS 91

Query: 561 IPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQER-SYNSSAITFSYAVPSRTTML 619
           +P     L  + +LD+S N ++            + +     N                L
Sbjct: 92  LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN------------ELKTL 139

Query: 620 PVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMD-LVGLIGLNLSRN 678
           P  +      L                  + L++N L  E+P  +++ L  L  L L  N
Sbjct: 140 PPGLLTPTPKLEK----------------LSLANNNL-TELPAGLLNGLENLDTLLLQEN 182

Query: 679 NLTGYITPKIGQLQSLDFLDLSRN 702
           +L   I         L F  L  N
Sbjct: 183 SLYT-IPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 46.3 bits (110), Expect = 2e-05
 Identities = 41/180 (22%), Positives = 65/180 (36%), Gaps = 44/180 (24%)

Query: 569 ADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIV 628
            D  IL LS N +          +T +TQ                +  T L V       
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR-----------AELTKLQV---DG-- 74

Query: 629 LLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKI 688
                        TL ++ ++DLS N+L   +P     L  L  L++S N LT  +    
Sbjct: 75  -------------TLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLT-SLPLGA 119

Query: 689 -GQLQSLDFLDLSRNQFS---GGIPSSLSQVNRLSVMDLSHNNLSGKIPTG-----TQLQ 739
              L  L  L L  N+      G+ +   ++ +L    L++NNL+ ++P G       L 
Sbjct: 120 LRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL---SLANNNLT-ELPAGLLNGLENLD 175

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 45/241 (18%), Positives = 74/241 (30%), Gaps = 53/241 (21%)

Query: 251 SPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIPKFFQNMF 310
             S   +     NLT           ++P  P        L LS+N L            
Sbjct: 9   VASHLEVNCDKRNLT-----------ALP--PDLPKDTTILHLSENLLYTFSLATLMPYT 55

Query: 311 KLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAGISDSIPDW 370
           +L  L+L    L  +           L                  LD+S   +  S+P  
Sbjct: 56  RLTQLNLDRAELTKL---QVDGTLPVLG----------------TLDLSHNQLQ-SLPLL 95

Query: 371 FSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSLPSNAF---- 426
                  L  L+ S N++T      +  +  L+   + +  N L+    +LP        
Sbjct: 96  GQTLP-ALTVLDVSFNRLTSLPLGALRGLGELQE--LYLKGNELK----TLPPGLLTPTP 148

Query: 427 ---YIDLSKNKFSG-PISFLCSFSG-QNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLAN 481
               + L+ N  +  P       +G +NL  L L  N L   +P  +   ++L    L  
Sbjct: 149 KLEKLSLANNNLTELPAG---LLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHG 204

Query: 482 N 482
           N
Sbjct: 205 N 205

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 69.9 bits (171), Expect = 8e-13
 Identities = 42/180 (23%), Positives = 59/180 (32%), Gaps = 23/180 (12%)

Query: 125 LRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPP-LLGNLSRLQYLSLGYNK 183
              LDLS NN S  +       L+ L  L L     +  I       +  L+YL L  N 
Sbjct: 41  TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNF-ISSEAFVPVPNLRYLDLSSNH 99

Query: 184 L--LRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQE--VDKIPSLKTLYLEQCDLQLQP 239
           L  L          L +L  L L + ++      +     + +  L+ LYL Q   Q+  
Sbjct: 100 LHTLDEFLFS---DLQALEVLLLYNNHIVV----VDRNAFEDMAQLQKLYLSQN--QISR 150

Query: 240 TIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELD 299
                    N  P L  L LS N L   +               P      L L +N L+
Sbjct: 151 FPVELIKDGNKLPKLMLLDLSSNKLK-KLPLTDLQ-------KLPAWVKNGLYLHNNPLE 202

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 55.6 bits (134), Expect = 3e-08
 Identities = 45/166 (27%), Positives = 72/166 (43%), Gaps = 6/166 (3%)

Query: 419 PSLPSNAFYIDLSKNKFSGPISFLCSFSG-QNLVYLDLSSNLLSGKLPDCWLQFNMLRIL 477
            SLPS    +DLS N  S  +    + +   NL  L LS N L+    + ++    LR L
Sbjct: 35  QSLPSYTALLDLSHNNLSR-LRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYL 93

Query: 478 NLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIP 537
           +L++N+           LQ +  L L++N+      +  ++   L+ + L +N IS   P
Sbjct: 94  DLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFP 152

Query: 538 AWI---GESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNN 580
             +   G  L  L++LDL SN+        L  L       L L+N
Sbjct: 153 VELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHN 198

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 51.4 bits (123), Expect = 7e-07
 Identities = 35/151 (23%), Positives = 54/151 (35%), Gaps = 34/151 (22%)

Query: 118 ALLKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYL 177
           A + +  LR+LDLS N                L  LD     FS         L  L+ L
Sbjct: 83  AFVPVPNLRYLDLSSN---------------HLHTLD--EFLFSD--------LQALEVL 117

Query: 178 SLGYNKL--LRAGNLDWISQLFSLRYLDLSSCNLSK-STDWLQEVDKIPSLKTLYLEQCD 234
            L  N +  +     +    +  L+ L LS   +S+   + +++ +K+P L  L L    
Sbjct: 118 LLYNNHIVVVDRNAFE---DMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNK 174

Query: 235 LQLQPTIHRSFSHLNSSPSLETLGLSYNNLT 265
           L+  P        L  +     L L  N L 
Sbjct: 175 LKKLP--LTDLQKL-PAWVKNGLYLHNNPLE 202

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 48.7 bits (116), Expect = 5e-06
 Identities = 39/182 (21%), Positives = 67/182 (36%), Gaps = 36/182 (19%)

Query: 251 SPSLETLGLSYNNLTASIYP-------------WLFN--VSSIP-DAPGPMISLRTLTLS 294
                 L LS+NNL+  +                L +  ++ I  +A  P+ +LR L LS
Sbjct: 38  PSYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96

Query: 295 DNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFS 354
            N L       F ++  LE L L  N +  V+  + F + + L+                
Sbjct: 97  SNHLHTLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQ---------------- 139

Query: 355 VLDISSAGISDSIPDWFSDTSH--KLADLNFSHNQMTGRFPNYISSMFILESPGIDISSN 412
            L +S   IS    +   D +   KL  L+ S N++       +  +      G+ + +N
Sbjct: 140 KLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199

Query: 413 HL 414
            L
Sbjct: 200 PL 201

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 44.8 bits (106), Expect = 9e-05
 Identities = 40/175 (22%), Positives = 65/175 (37%), Gaps = 38/175 (21%)

Query: 569 ADIQILDLSLNNISGNIPKC-FNNFTAMTQER-SYNSSAITFSYAVPSRTTMLPVHIFFD 626
           +   +LDLS NN+S    +      T +     S+N                +    F  
Sbjct: 39  SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN------------HLNFISSEAFVP 86

Query: 627 IVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEI-MDLVGLIGLNLSRNNLTGYIT 685
           +  L +                +DLSSN L   + E +  DL  L  L L  N++   + 
Sbjct: 87  VPNLRY----------------LDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIV-VVD 128

Query: 686 PKI-GQLQSLDFLDLSRNQ---FSGGIPSSLSQVNRLSVMDLSHNNLSGKIPTGT 736
                 +  L  L LS+NQ   F   +    +++ +L ++DLS N L  K+P   
Sbjct: 129 RNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK-KLPLTD 182

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 43.7 bits (103), Expect = 2e-04
 Identities = 41/218 (18%), Positives = 70/218 (32%), Gaps = 65/218 (29%)

Query: 519 FTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIP---FQLCHLADIQILD 575
            ++  ++ L  N++S     W    L NL  L L  N     I    F    + +++ LD
Sbjct: 38  PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHL-NFISSEAFV--PVPNLRYLD 94

Query: 576 LSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGS 635
           LS N++                                     L   +F D+  L     
Sbjct: 95  LSSNHL-----------------------------------HTLDEFLFSDLQALEV--- 116

Query: 636 EYEYKNTLGLVKSVDLSSNKLGGEVPEEIMD-LVGLIGLNLSRNNLTGYITPKI----GQ 690
                        + L +N +   V     + +  L  L LS+N ++     ++     +
Sbjct: 117 -------------LLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNK 161

Query: 691 LQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLS-HNN 727
           L  L  LDLS N+      + L ++       L  HNN
Sbjct: 162 LPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 42.9 bits (101), Expect = 3e-04
 Identities = 44/231 (19%), Positives = 64/231 (27%), Gaps = 78/231 (33%)

Query: 287 SLRTLTLSDNELDGEIPK--FFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFP 344
               L LS N L   +        +  L  L L  N L   IS   F     L+      
Sbjct: 40  YTALLDLSHNNL-SRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLR------ 91

Query: 345 KWLQTQKHFSVLDISSAGISDSIP-DWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILE 403
                      LD+SS  +  ++    FSD    L  L   +N +               
Sbjct: 92  ----------YLDLSSNHLH-TLDEFLFSDLQ-ALEVLLLYNNHIV-------------- 125

Query: 404 SPGIDISSNHLEGPSPSLPSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGK 463
                            +  NAF  D++                  L  L LS N +S +
Sbjct: 126 ----------------VVDRNAFE-DMA-----------------QLQKLYLSQNQIS-R 150

Query: 464 LP----DCWLQFNMLRILNLANNNFSGKIPNSCGYLQKM--LTLSLHHNNF 508
            P        +   L +L+L++N            L       L LH+N  
Sbjct: 151 FPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPL 201

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 42.1 bits (99), Expect = 6e-04
 Identities = 24/123 (19%), Positives = 45/123 (36%), Gaps = 22/123 (17%)

Query: 647 KSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKI--GQLQSLDFLDLSRNQF 704
             +  S  +L   VP+ +        L+LS NNL+  +  +    +L +L  L LS N  
Sbjct: 21  NILSCSKQQLP-NVPQSL--PSYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHL 76

Query: 705 SGGIPSSLSQVNRLSVMDLSHNNLSGKIPTGT---------------QLQSFNASVYDGN 749
           +     +   V  L  +DLS N+L   +                    +   + + ++  
Sbjct: 77  NFISSEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDM 135

Query: 750 PEL 752
            +L
Sbjct: 136 AQL 138

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 70.7 bits (173), Expect = 1e-12
 Identities = 73/509 (14%), Positives = 152/509 (29%), Gaps = 60/509 (11%)

Query: 76  RCSNQTGHVKVLDLHGTGRVKVLDIQTRVMSGNASLRGTLNPALLKLHYLRHLDLSFNNF 135
           R       V+ ++L G       D           +   +        +L  + L     
Sbjct: 64  RFPK----VRSVELKGKPHFA--DFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVV 117

Query: 136 SGSQIPMFIGSLSKLEYLDL-FAASFSGP-IPPLLGNLSRLQYLSLGYNKLLRAGNLDWI 193
           +   + +   S    + L L     FS   +  +      L+ L L  + +       W+
Sbjct: 118 TDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSG-HWL 176

Query: 194 SQLF----SLRYLDLSSCNLSKSTDWLQE-VDKIPSLKTLYLEQCDLQLQPTIHRSFSHL 248
           S       SL  L++S      S   L+  V + P+LK+L L +        + +  + L
Sbjct: 177 SHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA-----VPLEKLATLL 231

Query: 249 NSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIPKFFQN 308
             +P LE LG                 S +  A      LR L+   + +   +P  +  
Sbjct: 232 QRAPQLEELGTGGYTAEVR----PDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSV 287

Query: 309 MFKLEGLSLRG-----NSLEGVISE----------HFFSNFSYLKMGPHFPKW--LQTQK 351
             +L  L+L         L  ++ +           +  +     +         L+   
Sbjct: 288 CSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFP 347

Query: 352 HFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISS 411
               +   +  +++      S    KL  + +   QMT        ++  +       + 
Sbjct: 348 SEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNA------ALITIAR-----NR 396

Query: 412 NHLEGPSPSLPSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQF 471
            ++      +        L+          +     ++L  L LS  L            
Sbjct: 397 PNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVE-HCKDLRRLSLSGLLTDKVFEYIGTYA 455

Query: 472 NMLRILNLANNNFSGK----IPNSCGYLQKMLTLSLHHNNFSGE-LPSLLKNFTHLRVVA 526
             + +L++A    S      + + C  L+K   L +    F  + L +       +R + 
Sbjct: 456 KKMEMLSVAFAGDSDLGMHHVLSGCDSLRK---LEIRDCPFGDKALLANASKLETMRSLW 512

Query: 527 LEENSISGNIPAWIGESLLNLVVLDLRSN 555
           +   S+S      +G+ +  L V  +   
Sbjct: 513 MSSCSVSFGACKLLGQKMPKLNVEVIDER 541

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 43.7 bits (103), Expect = 2e-04
 Identities = 26/128 (20%), Positives = 45/128 (35%), Gaps = 5/128 (3%)

Query: 123 HYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGP-IPPLLGNLSRLQYLSLGY 181
             LR L LS    +            K+E L +  A  S   +  +L     L+ L +  
Sbjct: 432 KDLRRLSLS-GLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRD 490

Query: 182 NKLLRAGNLDWISQLFSLRYLDLSSCNLS-KSTDWLQEVDKIPSLKTLYLEQCDLQLQPT 240
                   L   S+L ++R L +SSC++S  +   L    K+P L    +++        
Sbjct: 491 CPFGDKALLANASKLETMRSLWMSSCSVSFGACKLL--GQKMPKLNVEVIDERGAPDSRP 548

Query: 241 IHRSFSHL 248
                  +
Sbjct: 549 ESCPVERV 556

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 66.6 bits (163), Expect = 5e-12
 Identities = 40/206 (19%), Positives = 78/206 (37%), Gaps = 33/206 (16%)

Query: 117 PALLKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQY 176
               +L+ +  +  + ++     +   I  L  +  L L     +  I P L NL  L +
Sbjct: 40  VTQNELNSIDQIIANNSDI--KSVQ-GIQYLPNVTKLFLNGNKLTD-IKP-LANLKNLGW 94

Query: 177 LSLGYNKLLRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQ 236
           L L  NK+    +L  +  L  L+ L L    +S     +  +  +P L++LYL    + 
Sbjct: 95  LFLDENKVK---DLSSLKDLKKLKSLSLEHNGISD----INGLVHLPQLESLYLGNNKIT 147

Query: 237 LQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDN 296
                    + L+    L+TL L  N ++        ++  +      +  L+ L LS N
Sbjct: 148 -------DITVLSRLTKLDTLSLEDNQIS--------DIVPLAG----LTKLQNLYLSKN 188

Query: 297 ELDGEIPKFFQNMFKLEGLSLRGNSL 322
            +  ++ +    +  L+ L L     
Sbjct: 189 HIS-DL-RALAGLKNLDVLELFSQEC 212

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 64.7 bits (158), Expect = 2e-11
 Identities = 39/207 (18%), Positives = 76/207 (36%), Gaps = 37/207 (17%)

Query: 119 LLKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFA---ASFSGPIPPLLGNLSRLQ 175
           +  L  +  L L+ N    + I   + +L  L +L L        S      L +L +L+
Sbjct: 64  IQYLPNVTKLFLNGNKL--TDIK-PLANLKNLGWLFLDENKVKDLSS-----LKDLKKLK 115

Query: 176 YLSLGYNKLLRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDL 235
            LSL +N +    +++ +  L  L  L L +  ++     +  + ++  L TL LE   +
Sbjct: 116 SLSLEHNGI---SDINGLVHLPQLESLYLGNNKITD----ITVLSRLTKLDTLSLEDNQI 168

Query: 236 QLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSD 295
                       L     L+ L LS N+++        ++ ++      + +L  L L  
Sbjct: 169 -------SDIVPLAGLTKLQNLYLSKNHIS--------DLRALAG----LKNLDVLELFS 209

Query: 296 NELDGEIPKFFQNMFKLEGLSLRGNSL 322
            E   +      N+     +     SL
Sbjct: 210 QECLNKPINHQSNLVVPNTVKNTDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 62.8 bits (153), Expect = 1e-10
 Identities = 37/261 (14%), Positives = 94/261 (36%), Gaps = 56/261 (21%)

Query: 146 SLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAGNLDWISQLFSLRYLDLS 205
           + ++    +L   S +  +      L+ +  +    + +    ++  I  L ++  L L+
Sbjct: 22  AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDI---KSVQGIQYLPNVTKLFLN 76

Query: 206 SCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLT 265
              L+     ++ +  + +L  L+L++  +       +  S L     L++L L +N ++
Sbjct: 77  GNKLTD----IKPLANLKNLGWLFLDENKV-------KDLSSLKDLKKLKSLSLEHNGIS 125

Query: 266 ASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGV 325
                   +++ +      +  L +L L +N++          + KL+ LSL  N +  +
Sbjct: 126 --------DINGL----VHLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQISDI 171

Query: 326 ISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAGISDSIPDWFSDTSH--KLADLNF 383
                 +  + L+                 L +S   ISD         +    L  L  
Sbjct: 172 ---VPLAGLTKLQ----------------NLYLSKNHISD-----LRALAGLKNLDVLEL 207

Query: 384 SHNQMTGRFPNYISSMFILES 404
              +   +  N+ S++ +  +
Sbjct: 208 FSQECLNKPINHQSNLVVPNT 228

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 60.1 bits (146), Expect = 6e-10
 Identities = 51/325 (15%), Positives = 106/325 (32%), Gaps = 63/325 (19%)

Query: 168 LGNLSRLQYLSLGYNKLLRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKT 227
               +     +L    +    +    ++L S+  +  ++ ++      +Q +  +P++  
Sbjct: 20  DDAFAETIKDNLKKKSV---TDAVTQNELNSIDQIIANNSDIKS----VQGIQYLPNVTK 72

Query: 228 LYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMIS 287
           L+L    L            L +  +L  L L  N +         ++SS+ D    +  
Sbjct: 73  LFLNGNKL-------TDIKPLANLKNLGWLFLDENKVK--------DLSSLKD----LKK 113

Query: 288 LRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWL 347
           L++L+L  N +  +I     ++ +LE L L  N +  +      +  S L          
Sbjct: 114 LKSLSLEHNGIS-DIN-GLVHLPQLESLYLGNNKITDI------TVLSRL---------- 155

Query: 348 QTQKHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILES--- 404
                   L +    ISD +P        KL +L  S N         IS +  L     
Sbjct: 156 ---TKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNH--------ISDLRALAGLKN 201

Query: 405 -PGIDISSNHLEGPSPSLPSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGK 463
              +++ S        +  SN    +  KN     ++        +    ++  +L    
Sbjct: 202 LDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFT 261

Query: 464 LPDCWLQFNMLRILNLANNNFSGKI 488
             +    F     +  A   F G++
Sbjct: 262 -NEVSFIFYQPVTIGKAKARFHGRV 285

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 48.5 bits (116), Expect = 4e-06
 Identities = 46/240 (19%), Positives = 87/240 (36%), Gaps = 29/240 (12%)

Query: 377 KLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSP-SLPSNAFYIDLSKNKF 435
           +    N     +T       + +  ++   I  +++ ++         N   + L+ NK 
Sbjct: 25  ETIKDNLKKKSVTD--AVTQNELNSIDQ--IIANNSDIKSVQGIQYLPNVTKLFLNGNKL 80

Query: 436 SGPISFLCSFSGQNLVYLDLSSNLLS-----GKLPDCWLQFNMLRILNLANNNFSGKIPN 490
           +  I  L +    NL +L L  N +        L         L+ L+L +N  S  I  
Sbjct: 81  TD-IKPLANLK--NLGWLFLDENKVKDLSSLKDLKK-------LKSLSLEHNGIS-DING 129

Query: 491 SCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVL 550
              +L ++ +L L +N  +    ++L   T L  ++LE+N IS +I       L  L  L
Sbjct: 130 -LVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQIS-DIVPL--AGLTKLQNL 183

Query: 551 DLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSY 610
            L  N         L  L ++ +L+L             +N       ++ + S +T   
Sbjct: 184 YLSKNHISDLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEI 241

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 47.7 bits (114), Expect = 7e-06
 Identities = 50/237 (21%), Positives = 91/237 (38%), Gaps = 40/237 (16%)

Query: 356 LDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESP----GIDISS 411
            ++    ++D++     +  + +  +  +++         I S+  ++       + ++ 
Sbjct: 29  DNLKKKSVTDAVT---QNELNSIDQIIANNSD--------IKSVQGIQYLPNVTKLFLNG 77

Query: 412 NHLEGPSP-SLPSNAFYIDLSKNKFSGPISFLCSFSG-QNLVYLDLSSNLLS-----GKL 464
           N L    P +   N  ++ L +NK    +  L S    + L  L L  N +S       L
Sbjct: 78  NKLTDIKPLANLKNLGWLFLDENK----VKDLSSLKDLKKLKSLSLEHNGISDINGLVHL 133

Query: 465 PDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRV 524
           P        L  L L NN  +  I      L K+ TLSL  N  S ++  L    T L+ 
Sbjct: 134 PQ-------LESLYLGNNKIT-DITVLSR-LTKLDTLSLEDNQIS-DIVPL-AGLTKLQN 182

Query: 525 VALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNI 581
           + L +N IS ++ A     L NL VL+L S     K      +L     +  +  ++
Sbjct: 183 LYLSKNHIS-DLRAL--AGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 47.4 bits (113), Expect = 1e-05
 Identities = 40/214 (18%), Positives = 78/214 (36%), Gaps = 42/214 (19%)

Query: 516 LKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILD 575
              F       L++ S++  +       L ++  +   ++     +   + +L ++  L 
Sbjct: 20  DDAFAETIKDNLKKKSVTDAVTQ---NELNSIDQIIANNSDI-KSVQG-IQYLPNVTKLF 74

Query: 576 LSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGS 635
           L+ N ++ +I K   N   +      + + +                   D+  L     
Sbjct: 75  LNGNKLT-DI-KPLANLKNLG-WLFLDENKVK------------------DLSSL----- 108

Query: 636 EYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLD 695
                  L  +KS+ L  N +       ++ L  L  L L  N +T  IT  + +L  LD
Sbjct: 109 -----KDLKKLKSLSLEHNGI--SDINGLVHLPQLESLYLGNNKITD-ITV-LSRLTKLD 159

Query: 696 FLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLS 729
            L L  NQ S      L+ + +L  + LS N++S
Sbjct: 160 TLSLEDNQISD--IVPLAGLTKLQNLYLSKNHIS 191

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 42.7 bits (101), Expect = 3e-04
 Identities = 45/290 (15%), Positives = 95/290 (32%), Gaps = 70/290 (24%)

Query: 439 ISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKM 498
           I    +F+    +  +L    ++        + N +  +   N++    +     YL  +
Sbjct: 17  IFSDDAFA--ETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIK-SVQG-IQYLPNV 70

Query: 499 LTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFY 558
             L L+ N  +   P  L N  +L  + L+EN +  ++ +   + L  L  L L  N   
Sbjct: 71  TKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVK-DLSS--LKDLKKLKSLSLEHNGI- 124

Query: 559 GKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTM 618
             I   L HL  ++ L L       N        + +T+                     
Sbjct: 125 SDING-LVHLPQLESLYL-----GNNKITDITVLSRLTK--------------------- 157

Query: 619 LPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRN 678
                                      + ++ L  N++       +  L  L  L LS+N
Sbjct: 158 ---------------------------LDTLSLEDNQI--SDIVPLAGLTKLQNLYLSKN 188

Query: 679 NLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNL 728
           +++  +   +  L++LD L+L   +      +  S +   + +  +  +L
Sbjct: 189 HIS-DLRA-LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 42.3 bits (100), Expect = 3e-04
 Identities = 41/237 (17%), Positives = 81/237 (34%), Gaps = 48/237 (20%)

Query: 495 LQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRS 554
             + +  +L   + +  +         +  +    + I  ++     + L N+  L L  
Sbjct: 23  FAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQGI--QYLPNVTKLFLNG 77

Query: 555 NRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMT--QERSYNSSAITFSYAV 612
           N+    I   L +L ++  L L  N +        ++   +   +  S   + I+     
Sbjct: 78  NKL-TDI-KPLANLKNLGWLFLDENKVK-----DLSSLKDLKKLKSLSLEHNGIS----- 125

Query: 613 PSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIG 672
                        DI  L            L  ++S+ L +NK+       +  L  L  
Sbjct: 126 -------------DINGL----------VHLPQLESLYLGNNKI--TDITVLSRLTKLDT 160

Query: 673 LNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLS 729
           L+L  N ++  I P +  L  L  L LS+N  S     +L+ +  L V++L      
Sbjct: 161 LSLEDNQIS-DIVP-LAGLTKLQNLYLSKNHISD--LRALAGLKNLDVLELFSQECL 213

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 64.9 bits (158), Expect = 2e-11
 Identities = 52/257 (20%), Positives = 82/257 (31%), Gaps = 25/257 (9%)

Query: 68  DCCNWRGVRCSNQTGHVKVLDLHGTGRVKVLDIQTRVMSGNASLRGTLNPALLKLHYLRH 127
           D   W+ +  + +  H  V         ++L           S              ++H
Sbjct: 45  DESLWQTLDLTGKNLHPDVTG-------RLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQH 97

Query: 128 LDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRA 187
           +DLS +    S +   +   SKL+ L L     S PI   L   S L  L+L        
Sbjct: 98  MDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSE 157

Query: 188 GNLDWISQ-LFSLRYLDLSSCNLSKSTDWLQEVDKI-PSLKTLYLEQCDLQLQPTIHRSF 245
             L  +      L  L+LS C           V  +  ++  L L      LQ       
Sbjct: 158 FALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQ---KSDL 214

Query: 246 SHLNSS-PSLETLGLSY-NNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSD-NELDGEI 302
           S L    P+L  L LS    L    +   F ++           L+ L+LS   ++  E 
Sbjct: 215 STLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLN----------YLQHLSLSRCYDIIPET 264

Query: 303 PKFFQNMFKLEGLSLRG 319
                 +  L+ L + G
Sbjct: 265 LLELGEIPTLKTLQVFG 281

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 62.5 bits (152), Expect = 2e-10
 Identities = 57/286 (19%), Positives = 94/286 (32%), Gaps = 58/286 (20%)

Query: 249 NSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIPKF-FQ 307
           +   +   L      L   I    F+             L  + +S N++   I    F 
Sbjct: 27  DLPRNAIELRFVLTKLR-VIQKGAFS---------GFGDLEKIEISQNDVLEVIEADVFS 76

Query: 308 NMFKLEGLSL-RGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAGISDS 366
           N+ KL  + + + N+L   I+   F N   L+                 L IS+ GI   
Sbjct: 77  NLPKLHEIRIEKANNLL-YINPEAFQNLPNLQ----------------YLLISNTGIK-H 118

Query: 367 IPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSLPSNAF 426
           +PD     S +   L+   N         I +          I  N   G    L   + 
Sbjct: 119 LPDVHKIHSLQKVLLDIQDN-------INIHT----------IERNSFVG----LSFESV 157

Query: 427 YIDLSKNKFSGPISFLCSFSGQNLVYLDLSS-NLLSGKLPDCWLQFNMLRILNLANNNFS 485
            + L+KN     I     F+G  L  L+LS  N L     D +   +   IL+++     
Sbjct: 158 ILWLNKNGIQE-IHNSA-FNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH 215

Query: 486 GKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENS 531
                    L+K+   S ++     +LP+ L+    L   +L   S
Sbjct: 216 SLPSYGLENLKKLRARSTYNLK---KLPT-LEKLVALMEASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 59.8 bits (145), Expect = 1e-09
 Identities = 43/275 (15%), Positives = 74/275 (26%), Gaps = 52/275 (18%)

Query: 126 RHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPP-LLGNLSRLQYLSLGYNKL 184
           R      +  +  +IP  +        L          I          L+ + +  N +
Sbjct: 12  RVFLCQESKVT--EIPSDL--PRNAIELRFVLTKLRV-IQKGAFSGFGDLEKIEISQNDV 66

Query: 185 LRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEV-----DKIPSLKTLYLEQCDLQLQP 239
           L     D  S L  L  + +   N       L  +       +P+L+ L +    ++  P
Sbjct: 67  LEVIEADVFSNLPKLHEIRIEKAN------NLLYINPEAFQNLPNLQYLLISNTGIKHLP 120

Query: 240 TIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAP--GPMISLRTLTLSDNE 297
                  H         L +  N           N+ +I      G       L L+ N 
Sbjct: 121 --DVHKIHS---LQKVLLDIQDNI----------NIHTIERNSFVGLSFESVILWLNKNG 165

Query: 298 LDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLD 357
           +       F      E      N+LE  +    F   S                   +LD
Sbjct: 166 IQEIHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPV----------------ILD 208

Query: 358 ISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRF 392
           IS   I  S+P +  +   KL   +  + +     
Sbjct: 209 ISRTRIH-SLPSYGLENLKKLRARSTYNLKKLPTL 242

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 56.0 bits (135), Expect = 2e-08
 Identities = 45/223 (20%), Positives = 77/223 (34%), Gaps = 44/223 (19%)

Query: 118 ALLKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYL 177
           A      L  +++S N+            L  +E     A  FS        NL +L  +
Sbjct: 49  AFSGFGDLEKIEISQND-----------VLEVIE-----ADVFS--------NLPKLHEI 84

Query: 178 SLGYNKLLRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCD-LQ 236
            +     L   N +    L +L+YL +S+  +      L +V KI SL+ + L+  D + 
Sbjct: 85  RIEKANNLLYINPEAFQNLPNLQYLLISNTGIKH----LPDVHKIHSLQKVLLDIQDNIN 140

Query: 237 LQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDN 296
           +      SF  L  S     L L+ N +   I+   FN +                  +N
Sbjct: 141 IHTIERNSFVGL--SFESVILWLNKNGIQ-EIHNSAFNGTQ---------LDELNLSDNN 188

Query: 297 ELDGEIPKF-FQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLK 338
            L+ E+P   F        L +    +   +  +   N   L+
Sbjct: 189 NLE-ELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLR 229

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 51.0 bits (122), Expect = 8e-07
 Identities = 34/233 (14%), Positives = 67/233 (28%), Gaps = 36/233 (15%)

Query: 500 TLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYG 559
            L                 F  L  + + +N +   I A +  +L  L  + +       
Sbjct: 34  ELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL 93

Query: 560 KIPFQLC-HLADIQILDLSLNNISGNIPKCFNNFTAMTQER----SYNSSAITFSYAVPS 614
            I  +   +L ++Q L +S   I  ++P    +     Q+       N            
Sbjct: 94  YINPEAFQNLPNLQYLLISNTGIK-HLPD--VHKIHSLQKVLLDIQDN-----------I 139

Query: 615 RTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLN 674
               +  + F  +   +                 + L+ N +  E+     +   L  LN
Sbjct: 140 NIHTIERNSFVGLSFES---------------VILWLNKNGI-QEIHNSAFNGTQLDELN 183

Query: 675 LSRNNLTGYITPKI-GQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHN 726
           LS NN    +   +         LD+SR +        L  + +L      + 
Sbjct: 184 LSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL 236

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 44.8 bits (106), Expect = 8e-05
 Identities = 47/305 (15%), Positives = 85/305 (27%), Gaps = 71/305 (23%)

Query: 407 IDISSNHLEGPSPSLPSNAFYIDLSKNKFSGPISFLCS--FSG-QNLVYLDLSSNLLSGK 463
                + +      LP NA  +     K    +  +    FSG  +L  +++S N +   
Sbjct: 14  FLCQESKVTEIPSDLPRNAIELRFVLTK----LRVIQKGAFSGFGDLEKIEISQNDVLEV 69

Query: 464 LPDCWLQF-NMLRILNLANNNFSGKIP-NSCGYLQKMLTLSLHHNNFSGELPSLLKNFTH 521
           +          L  + +   N    I   +   L  +  L + +                
Sbjct: 70  IEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK------------ 117

Query: 522 LRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIP---FQLCHLADIQILDLSL 578
                        ++P       L  V+LD++ N     I    F      +  IL L+ 
Sbjct: 118 -------------HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLS-FESVILWLNK 163

Query: 579 NNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYE 638
           N I       FN         S N           +    LP  +F              
Sbjct: 164 NGIQEIHNSAFNGTQLDELNLSDN-----------NNLEELPNDVFHGASGPVI------ 206

Query: 639 YKNTLGLVKSVDLSSNKLGGEVPEEIMD-LVGLIGLNLSRNNLTGYITPKIGQLQSLDFL 697
                     +D+S  ++   +P   ++ L  L   +    NL     P + +L +L   
Sbjct: 207 ----------LDISRTRI-HSLPSYGLENLKKLRARST--YNLK--KLPTLEKLVALMEA 251

Query: 698 DLSRN 702
            L+  
Sbjct: 252 SLTYP 256

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 60.4 bits (147), Expect = 5e-10
 Identities = 40/185 (21%), Positives = 71/185 (38%), Gaps = 27/185 (14%)

Query: 121 KLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPP-LLGNLSRLQYLSL 179
            L +L  L L+ N      +  F G LS L+ L     + +  +    +G+L  L+ L++
Sbjct: 74  SLSHLSTLILTGNPIQSLALGAFSG-LSSLQKLVAVETNLAS-LENFPIGHLKTLKELNV 131

Query: 180 GYNKLLRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQE--VDKIPSLKTLYLEQ--CDL 235
            +N +      ++ S L +L +LDLSS  +      +    +  +  +  L L       
Sbjct: 132 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS----IYCTDLRVLHQMPLLNLSLDLSLN 187

Query: 236 QLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPD-APGPMISLRTLTLS 294
            +      +F  +     L+ L L  N L            S+PD     + SL+ + L 
Sbjct: 188 PMNFIQPGAFKEIR----LKELALDTNQLK-----------SVPDGIFDRLTSLQKIWLH 232

Query: 295 DNELD 299
            N  D
Sbjct: 233 TNPWD 237

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 57.7 bits (140), Expect = 3e-09
 Identities = 51/239 (21%), Positives = 77/239 (32%), Gaps = 77/239 (32%)

Query: 125 LRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKL 184
            ++LDLSFN             L  L      + SF         +   LQ L L   ++
Sbjct: 30  TKNLDLSFNP------------LRHLG-----SYSFF--------SFPELQVLDLSRCEI 64

Query: 185 --LRAGNLDWISQL-----------------F----SLRYLDLSSCNLSKSTDWLQEV-- 219
             +  G    +S L                 F    SL+ L     NL+     L+    
Sbjct: 65  QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS----LENFPI 120

Query: 220 DKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLF------ 273
             + +LK L +    +Q    +   FS+L    +LE L LS N +  SIY          
Sbjct: 121 GHLKTLKELNVAHNLIQSFK-LPEYFSNL---TNLEHLDLSSNKIQ-SIYCTDLRVLHQM 175

Query: 274 ------------NVSSIPDAPGPMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGN 320
                        ++ I       I L+ L L  N+L       F  +  L+ + L  N
Sbjct: 176 PLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 50.0 bits (120), Expect = 1e-06
 Identities = 44/234 (18%), Positives = 77/234 (32%), Gaps = 34/234 (14%)

Query: 474 LRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSIS 533
            + L+L+ N        S     ++  L L             ++ +HL  + L  N I 
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 534 GNIPAWIGESLLNLVVLDLRSNRFYG--KIPFQLCHLADIQILDLSLNNI-SGNIPKCFN 590
            ++       L +L  L             P    HL  ++ L+++ N I S  +P+ F+
Sbjct: 90  -SLALGAFSGLSSLQKLVAVETNLASLENFPIG--HLKTLKELNVAHNLIQSFKLPEYFS 146

Query: 591 NFTAMTQ-ERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSV 649
           N T +   + S N            +   +       +  +              L  S+
Sbjct: 147 NLTNLEHLDLSSN------------KIQSIYCTDLRVLHQMPL------------LNLSL 182

Query: 650 DLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKI-GQLQSLDFLDLSRN 702
           DLS N +   +       + L  L L  N L   +   I  +L SL  + L  N
Sbjct: 183 DLSLNPMN-FIQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 47.3 bits (113), Expect = 1e-05
 Identities = 55/245 (22%), Positives = 95/245 (38%), Gaps = 52/245 (21%)

Query: 252 PSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIPKFFQNMFK 311
            S + L LS+N L   +  + F   S P        L+ L LS  E+       +Q++  
Sbjct: 28  FSTKNLDLSFNPLR-HLGSYSF--FSFP-------ELQVLDLSRCEIQTIEDGAYQSLSH 77

Query: 312 LEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAGISDSIPDWF 371
           L  L L GN ++  ++   FS  S L+                 L      ++ S+ ++ 
Sbjct: 78  LSTLILTGNPIQ-SLALGAFSGLSSLQ----------------KLVAVETNLA-SLENFP 119

Query: 372 SDTSHKLADLNFSHNQMTG-RFPNYISSMFILESPGIDISSNHLEGPSPSLPSNAF---- 426
                 L +LN +HN +   + P Y S++  LE   +D+SSN ++    S+         
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH--LDLSSNKIQ----SIYCTDLRVLH 173

Query: 427 -------YIDLSKNKFSGPISFL--CSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRIL 477
                   +DLS N     ++F+   +F    L  L L +N L       + +   L+ +
Sbjct: 174 QMPLLNLSLDLSLNP----MNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKI 229

Query: 478 NLANN 482
            L  N
Sbjct: 230 WLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 46.5 bits (111), Expect = 2e-05
 Identities = 35/197 (17%), Positives = 61/197 (30%), Gaps = 40/197 (20%)

Query: 569 ADIQILDLSLNNISGNIPKCFNNFTAMTQ-ERSYNSSAITFSYAVPSRTTMLPVHIFFDI 627
              + LDLS N +       F +F  +   + S                  +    +  +
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC------------EIQTIEDGAYQSL 75

Query: 628 VLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMD-LVGLIGLNLSRNNLTGYITP 686
             L+          TL       L+ N +   +       L  L  L     NL   +  
Sbjct: 76  SHLS----------TL------ILTGNPI-QSLALGAFSGLSSLQKLVAVETNLA-SLEN 117

Query: 687 KI-GQLQSLDFLDLSRNQF-SGGIPSSLSQVNRLSVMDLSHNNLSGKIPTG-----TQLQ 739
              G L++L  L+++ N   S  +P   S +  L  +DLS N +   I         Q+ 
Sbjct: 118 FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMP 176

Query: 740 SFNASVYDGNPELCGLP 756
             N S+      +  + 
Sbjct: 177 LLNLSLDLSLNPMNFIQ 193

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 46.1 bits (110), Expect = 2e-05
 Identities = 47/245 (19%), Positives = 73/245 (29%), Gaps = 67/245 (27%)

Query: 501 LSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGK 560
           L L  N           +F  L+V+ L    I   I     +SL +L  L L  N     
Sbjct: 33  LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPI-QS 90

Query: 561 IP---FQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTT 617
           +    F    L+ +Q L     N+                                    
Sbjct: 91  LALGAFS--GLSSLQKLVAVETNL-----------------------------------A 113

Query: 618 MLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGG-EVPEEIMDLVGLIGLNLS 676
            L       +  L                  ++++ N +   ++PE   +L  L  L+LS
Sbjct: 114 SLENFPIGHLKTLKE----------------LNVAHNLIQSFKLPEYFSNLTNLEHLDLS 157

Query: 677 RNNLTGYITPKI----GQLQSLDF-LDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGK 731
            N +   I         Q+  L+  LDLS N  +  I     +  RL  + L  N L   
Sbjct: 158 SNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLK-S 214

Query: 732 IPTGT 736
           +P G 
Sbjct: 215 VPDGI 219

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 43.4 bits (103), Expect = 2e-04
 Identities = 46/261 (17%), Positives = 77/261 (29%), Gaps = 72/261 (27%)

Query: 287 SLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKW 346
           S + L LS N L       F +  +L+ L L    ++  I +  + + S+L         
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLS-------- 79

Query: 347 LQTQKHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPG 406
                    L ++   I       FS  S  L  L      +                  
Sbjct: 80  --------TLILTGNPIQSLALGAFSGLS-SLQKLVAVETNLA----------------- 113

Query: 407 IDISSNHLEGPSPSLPSNAF-------YIDLSKNKFSGPISFLCS---FSG-QNLVYLDL 455
                        SL +           ++++ N     I        FS   NL +LDL
Sbjct: 114 -------------SLENFPIGHLKTLKELNVAHNL----IQSFKLPEYFSNLTNLEHLDL 156

Query: 456 SSNLLSGKLPDC------WLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFS 509
           SSN +   +          +    L  L+L+ N  +  I        ++  L+L  N   
Sbjct: 157 SSNKIQ-SIYCTDLRVLHQMPLLNLS-LDLSLNPMN-FIQPGAFKEIRLKELALDTNQLK 213

Query: 510 GELPSLLKNFTHLRVVALEEN 530
                +    T L+ + L  N
Sbjct: 214 SVPDGIFDRLTSLQKIWLHTN 234

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 59.3 bits (144), Expect = 9e-10
 Identities = 32/197 (16%), Positives = 67/197 (34%), Gaps = 38/197 (19%)

Query: 119 LLKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFA---ASFSGPIPPLLGNLSRLQ 175
             +L  +++ +   +N     +   +   + L+ L L     +  S      L +L++L+
Sbjct: 37  QKELSGVQNFNGDNSNI--QSLA-GMQFFTNLKELHLSHNQISDLSP-----LKDLTKLE 88

Query: 176 YLSLGYNKLLRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDL 235
            LS+  N+L     +        L  L L +  L         +  + +L+ L +    L
Sbjct: 89  ELSVNRNRLKNLNGIP----SACLSRLFLDNNELRD----TDSLIHLKNLEILSIRNNKL 140

Query: 236 QLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSD 295
                  +S   L     LE L L  N +T        N   +      +  +  + L+ 
Sbjct: 141 -------KSIVMLGFLSKLEVLDLHGNEIT--------NTGGLTR----LKKVNWIDLTG 181

Query: 296 NELDGEIPKFFQNMFKL 312
            +   E  K+   ++  
Sbjct: 182 QKCVNEPVKYQPELYIT 198

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 57.3 bits (139), Expect = 5e-09
 Identities = 35/194 (18%), Positives = 70/194 (36%), Gaps = 31/194 (15%)

Query: 144 IGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAGNLDWISQLFSLRYLD 203
              L+     +L   S +  +      LS +Q  +   + +    +L  +    +L+ L 
Sbjct: 15  DPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQ---SLAGMQFFTNLKELH 69

Query: 204 LSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNN 263
           LS   +S     L  +  +  L+ L + +  L       ++ + +  S  L  L L  N 
Sbjct: 70  LSHNQISD----LSPLKDLTKLEELSVNRNRL-------KNLNGI-PSACLSRLFLDNNE 117

Query: 264 LTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLE 323
           L         +  S+      + +L  L++ +N+L   I      + KLE L L GN + 
Sbjct: 118 LR--------DTDSLIH----LKNLEILSIRNNKLK-SIV-MLGFLSKLEVLDLHGNEIT 163

Query: 324 GVISEHFFSNFSYL 337
                      +++
Sbjct: 164 NTGGLTRLKKVNWI 177

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 24/139 (17%), Positives = 47/139 (33%), Gaps = 15/139 (10%)

Query: 119 LLKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLS 178
           L  L  L  L ++ N      +       + L  L L            L +L  L+ LS
Sbjct: 81  LKDLTKLEELSVNRNRLK--NLNGI--PSACLSRLFLDNNELRDTDS--LIHLKNLEILS 134

Query: 179 LGYNKLLRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQ 238
           +  NKL    ++  +  L  L  LDL    ++        + ++  +  + L       +
Sbjct: 135 IRNNKL---KSIVMLGFLSKLEVLDLHGNEITN----TGGLTRLKKVNWIDLTGQKCVNE 187

Query: 239 PTIHRSFSHLNSSPSLETL 257
           P  +     L  + +++  
Sbjct: 188 PVKY--QPELYITNTVKDP 204

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 60.9 bits (147), Expect = 1e-09
 Identities = 51/323 (15%), Positives = 95/323 (29%), Gaps = 18/323 (5%)

Query: 412 NHLEGPSPSLPSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQF 471
              E        +    +   +        + S  G  L+ +D +   +  + PD   + 
Sbjct: 237 GRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRP 296

Query: 472 NMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFS----GELPSLLKNFTHLRVVAL 527
           + + + +L   + + ++P     +    + S                       L    L
Sbjct: 297 SHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCEL 356

Query: 528 EENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPK 587
                +  + + + ES   L  L+  +      I   +  L  +     +L   S     
Sbjct: 357 SVEKST-VLQSEL-ESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 414

Query: 588 CFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVK 647
                  +   RS      +      +   +L +       L      E      L LV 
Sbjct: 415 DPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLA---HKDLTVLCHLEQ-----LLLVT 466

Query: 648 SVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSG- 706
            +DLS N+L   +P  +  L  L  L  S N L       +  L  L  L L  N+    
Sbjct: 467 HLDLSHNRLR-ALPPALAALRCLEVLQASDNALE--NVDGVANLPRLQELLLCNNRLQQS 523

Query: 707 GIPSSLSQVNRLSVMDLSHNNLS 729
                L    RL +++L  N+L 
Sbjct: 524 AAIQPLVSCPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 60.2 bits (145), Expect = 2e-09
 Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 11/116 (9%)

Query: 117 PALLKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFA---ASFSGPIPPLLGNLSR 173
             L +L  + HLDLS N      +P  + +L  LE L        +  G     + NL R
Sbjct: 457 CHLEQLLLVTHLDLSHNRLR--ALPPALAALRCLEVLQASDNALENVDG-----VANLPR 509

Query: 174 LQYLSLGYNKLLRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKI-PSLKTL 228
           LQ L L  N+L ++  +  +     L  L+L   +L +     + + ++ PS+ ++
Sbjct: 510 LQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 58.2 bits (140), Expect = 7e-09
 Identities = 40/226 (17%), Positives = 69/226 (30%), Gaps = 28/226 (12%)

Query: 114 TLNPALLKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSR 173
                      L   +LS    +   +   + S  +L+ L+         I  L+  L  
Sbjct: 340 CWCRDSATDEQLFRCELSVEKST--VLQSELESCKELQELEPENKWCLLTIILLMRALDP 397

Query: 174 LQYLSLGYNKLLRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQC 233
           L Y             +D       +R   L         +      +   ++ L+L   
Sbjct: 398 LLYEKETLQYFSTLKAVD------PMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHK 451

Query: 234 DLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTL 293
           DL           HL     +  L LS+N L            ++P A   +  L  L  
Sbjct: 452 DL-------TVLCHLEQLLLVTHLDLSHNRLR-----------ALPPALAALRCLEVLQA 493

Query: 294 SDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKM 339
           SDN L+  +     N+ +L+ L L  N L+   +     +   L +
Sbjct: 494 SDNALE-NVDG-VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVL 537

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 54.4 bits (130), Expect = 1e-07
 Identities = 33/163 (20%), Positives = 52/163 (31%), Gaps = 30/163 (18%)

Query: 144 IGSLSKLEYLD--------LFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAGNLDWISQ 195
           +   S L+ +D           + F      L    + ++ L L +  L     L  + Q
Sbjct: 405 LQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTV---LCHLEQ 461

Query: 196 LFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLE 255
           L  + +LDLS   L      L     +  L+ L      L        +   + + P L+
Sbjct: 462 LLLVTHLDLSHNRLRALPPAL---AALRCLEVLQASDNAL-------ENVDGVANLPRLQ 511

Query: 256 TLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNEL 298
            L L  N L       +  + S P        L  L L  N L
Sbjct: 512 ELLLCNNRLQQ--SAAIQPLVSCP-------RLVLLNLQGNSL 545

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 52.8 bits (126), Expect = 4e-07
 Identities = 27/98 (27%), Positives = 37/98 (37%), Gaps = 10/98 (10%)

Query: 168 LGNLSRLQYLSLGYNKLLRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKT 227
           L  L  + +L L +N+L        ++ L  L  L  S   L      +  V  +P L+ 
Sbjct: 459 LEQLLLVTHLDLSHNRLRAL--PPALAALRCLEVLQASDNALEN----VDGVANLPRLQE 512

Query: 228 LYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLT 265
           L L    LQ    I      L S P L  L L  N+L 
Sbjct: 513 LLLCNNRLQQSAAI----QPLVSCPRLVLLNLQGNSLC 546

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 55.8 bits (135), Expect = 9e-09
 Identities = 35/176 (19%), Positives = 61/176 (34%), Gaps = 50/176 (28%)

Query: 128 LDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKL--L 185
           L L+ N              + LE   +F              L +L+ ++   NK+  +
Sbjct: 37  LRLNNN------------EFTVLEATGIFK------------KLPQLRKINFSNNKITDI 72

Query: 186 RAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEV-DKIPSLKTLYLEQCDLQLQPTIHRS 244
             G  +       +  + L+S N  ++     ++   + SLKTL L    +      + S
Sbjct: 73  EEGAFE---GASGVNEILLTS-NRLENVQH--KMFKGLESLKTLMLRSNRITCVG--NDS 124

Query: 245 FSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPD-APGPMISLRTLTLSDNELD 299
           F  L    S+  L L  N +T           ++   A   + SL TL L  N  +
Sbjct: 125 FIGL---SSVRLLSLYDNQIT-----------TVAPGAFDTLHSLSTLNLLANPFN 166

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 50.8 bits (122), Expect = 4e-07
 Identities = 33/148 (22%), Positives = 57/148 (38%), Gaps = 21/148 (14%)

Query: 175 QYLSLGYNKLLRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQE--VDKIPSLKTLYLEQ 232
             L L  N+           +L  LR ++ S+  ++     ++E   +    +  + L  
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITD----IEEGAFEGASGVNEILLTS 90

Query: 233 CDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLT 292
             L+     H+ F  L    SL+TL L  N +T  +    F           + S+R L+
Sbjct: 91  NRLENVQ--HKMFKGL---ESLKTLMLRSNRIT-CVGNDSFI---------GLSSVRLLS 135

Query: 293 LSDNELDGEIPKFFQNMFKLEGLSLRGN 320
           L DN++    P  F  +  L  L+L  N
Sbjct: 136 LYDNQITTVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 41.2 bits (97), Expect = 6e-04
 Identities = 34/173 (19%), Positives = 57/173 (32%), Gaps = 35/173 (20%)

Query: 70  CNWRGVRCSNQ------TG---HVKVLDLHGTGRVKVLDIQTRVMSGNASLRGTLNPALL 120
           C    V CSNQ           +   L L+          +  V+      +        
Sbjct: 11  CEGTTVDCSNQKLNKIPEHIPQYTAELRLNNN--------EFTVLEATGIFKK------- 55

Query: 121 KLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPP-LLGNLSRLQYLSL 179
            L  LR ++ S N  +  +   F G  S +  + L +      +   +   L  L+ L L
Sbjct: 56  -LPQLRKINFSNNKITDIEEGAFEG-ASGVNEILLTSNRLEN-VQHKMFKGLESLKTLML 112

Query: 180 GYNKL--LRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYL 230
             N++  +   +      L S+R L L    ++         D + SL TL L
Sbjct: 113 RSNRITCVGNDSFI---GLSSVRLLSLYDNQITTVAP--GAFDTLHSLSTLNL 160

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 58.3 bits (140), Expect = 1e-08
 Identities = 55/289 (19%), Positives = 95/289 (32%), Gaps = 54/289 (18%)

Query: 195 QLFSLRYLDLSSCNLSKSTDWLQEVDKI-PSLKTLYLEQCDLQLQPTIHRS--FSHLNSS 251
            L   +YLD    +L +      EV    P      L      ++  +     + H+N  
Sbjct: 305 SLLL-KYLDCRPQDLPR------EVLTTNP----RRLSIIAESIRDGLATWDNWKHVNCD 353

Query: 252 PSLETLGLSYNNLTASIYPWLFNVSSI--PDAPGPMISLRTLTLSDNELDGEIPKFFQNM 309
                +  S N L  + Y  +F+  S+  P A    I    L+L   ++         N 
Sbjct: 354 KLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH---IPTILLSLIWFDVIKSDVMVVVN- 409

Query: 310 FKLEGLSL-RGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLD-------ISSA 361
            KL   SL      E  IS        YL++        +   H S++D         S 
Sbjct: 410 -KLHKYSLVEKQPKESTISIPSI----YLELKVKLEN--EYALHRSIVDHYNIPKTFDSD 462

Query: 362 GISDSIPD--WFSDTSHKLADLNFSHNQMTGRFPN-YISSMFI---LESPGIDISSNHLE 415
            +     D  ++S   H L ++   H +    F   ++   F+   +       + N   
Sbjct: 463 DLIPPYLDQYFYSHIGHHLKNIE--HPERMTLFRMVFLDFRFLEQKIRHDS--TAWNASG 518

Query: 416 GPSPSLPSNAFY---IDLSKNKFSGPISFLCSFS---GQNLV---YLDL 455
               +L    FY   I  +  K+   ++ +  F     +NL+   Y DL
Sbjct: 519 SILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDL 567

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.5 bits (130), Expect = 1e-07
 Identities = 84/620 (13%), Positives = 178/620 (28%), Gaps = 197/620 (31%)

Query: 123 HYLRHLDLSFN--NFSGSQI-----PMFIGSLSKLEYLDLFAASFSGP-IPPLLGNLSRL 174
           H+  H+D       +    I       F+ +    +  D+  +  S   I  ++ +   +
Sbjct: 2   HHHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAV 61

Query: 175 QYLSLGYNKLLRAGNLDWISQLFSLRYLDLSSCNLSKSTDWL----QEVDKIPSLKT-LY 229
                 +  LL       + Q F    L         +  +L    +   + PS+ T +Y
Sbjct: 62  SGTLRLFWTLLSKQEE--MVQKFVEEVLR-------INYKFLMSPIKTEQRQPSMMTRMY 112

Query: 230 LEQCD----------------LQLQPTIHRSFSHLNSSPSLETLGL-----SYNNLTAS- 267
           +EQ D                LQ    + ++   L  + ++   G+     ++  +    
Sbjct: 113 IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW--VALDV 170

Query: 268 -------------IYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIPKFFQNMFKLEG 314
                        I+ WL N+ +       +  L+ L     ++D   P +         
Sbjct: 171 CLSYKVQCKMDFKIF-WL-NLKNCNSPETVLEMLQKLLY---QID---PNWTSRSDHSSN 222

Query: 315 LSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWL------QTQKHFSVLDISS-------- 360
           + LR +S++  +     S          +   L      Q  K ++  ++S         
Sbjct: 223 IKLRIHSIQAELRRLLKS--------KPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRF 274

Query: 361 AGISDSI-PDWFSDTSHKLADLNFSHNQMTGRFPNYIS------------------SMF- 400
             ++D +     +  S     +  + +++      Y+                   S+  
Sbjct: 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIA 334

Query: 401 --ILESPG----------------IDISSNHLEGPSPSLPSN--AFYIDLS--------- 431
             I +                   I+ S N LE      P+     +  LS         
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE------PAEYRKMFDRLSVFPPSAHIP 388

Query: 432 ---------KNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNML-------- 474
                        S  +  +      +LV      + +S  +P  +L+  +         
Sbjct: 389 TILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS--IPSIYLELKVKLENEYALH 446

Query: 475 -RILN-------LANNNFSGKIPNSCGYLQKMLTLSLHH--NNFSGELPSLLKN-FTHLR 523
             I++         +++     P    Y    +    HH  N    E  +L +  F   R
Sbjct: 447 RSIVDHYNIPKTFDSDDLI--PPYLDQYFYSHIG---HHLKNIEHPERMTLFRMVFLDFR 501

Query: 524 VVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQ-ILDLSLNNIS 582
            +   E  I  +  AW     +   +  L+   FY        ++ D     +  +N I 
Sbjct: 502 FL---EQKIRHDSTAWNASGSILNTLQQLK---FYKP------YICDNDPKYERLVNAIL 549

Query: 583 GNIPKCFNN-----FTAMTQ 597
             +PK   N     +T + +
Sbjct: 550 DFLPKIEENLICSKYTDLLR 569

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.6 bits (107), Expect = 8e-05
 Identities = 77/480 (16%), Positives = 130/480 (27%), Gaps = 168/480 (35%)

Query: 326 ISEHFFSNFSYLKMGPHF-PKWLQTQKHFSVLDISSAGIS----DSI---PDWFSDTSHK 377
             EH    + Y  +   F   ++       V D+  + +S    D I    D  S T   
Sbjct: 11  TGEH---QYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL 67

Query: 378 LADLNFSHNQMTGRF------PNYISSMFILESPGIDISSNHLEGPSPSLPSNAFYIDLS 431
              L     +M  +F       NY    F++      I     E   PS+ +   YI+  
Sbjct: 68  FWTLLSKQEEMVQKFVEEVLRINY---KFLMSP----I---KTEQRQPSMMTRM-YIEQR 116

Query: 432 KNKFSGPISF-----------------LCSFSGQNLVYLD---------LSSNLLSGKLP 465
              ++    F                 L        V +D         ++ ++      
Sbjct: 117 DRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKV 176

Query: 466 DC-------WLQFNMLR----ILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPS 514
            C       WL          +L +         PN          + L  ++   EL  
Sbjct: 177 QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236

Query: 515 LLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQIL 574
           LLK+  +                      LL   VL                   ++Q  
Sbjct: 237 LLKSKPYEN-------------------CLL---VLL------------------NVQ-- 254

Query: 575 DLSLNNISGNIPKCFNN-----FTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVL 629
                  +      FN       T  T+ +      +T   +  + T     HI  D   
Sbjct: 255 -------NAKAWNAFNLSCKILLT--TRFKQ-----VTDFLSAATTT-----HISLDHHS 295

Query: 630 LTWKGSEYEYKNTLGLV-KSVDLSSNKLGGEVPEEIMD----LVGLIGLNLSRNNLT--G 682
           +T    E        L+ K +D     L    P E++      + +I  ++     T   
Sbjct: 296 MTLTPDE-----VKSLLLKYLDCRPQDL----PREVLTTNPRRLSIIAESIRDGLATWDN 346

Query: 683 YITPKIGQLQ-----SLDFLDLSRNQFSGGIPSSLSQV-NRLSVMDLSHNNLSGKIPTGT 736
           +      +L      SL+ L+          P+   ++ +RLSV        S  IPT  
Sbjct: 347 WKHVNCDKLTTIIESSLNVLE----------PAEYRKMFDRLSVF-----PPSAHIPTIL 391

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 55.4 bits (134), Expect = 1e-08
 Identities = 25/134 (18%), Positives = 45/134 (33%), Gaps = 26/134 (19%)

Query: 170 NLSRLQYLSLGYNKL--LRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEV-DKIPSLK 226
              +L+ + L  N++  L          L SL  L L    +         + + + SL+
Sbjct: 54  PYKKLRRIDLSNNQISELAPDAFQ---GLRSLNSLVLYGNKI-TELPK--SLFEGLFSLQ 107

Query: 227 TLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPD-APGPM 285
            L L    +        +F  L    +L  L L  N L            +I      P+
Sbjct: 108 LLLLNANKINCLR--VDAFQDL---HNLNLLSLYDNKLQ-----------TIAKGTFSPL 151

Query: 286 ISLRTLTLSDNELD 299
            +++T+ L+ N   
Sbjct: 152 RAIQTMHLAQNPFI 165

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 51.6 bits (124), Expect = 2e-07
 Identities = 33/151 (21%), Positives = 55/151 (36%), Gaps = 28/151 (18%)

Query: 175 QYLSLGYNKL--LRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQE--VDKIPSLKTLYL 230
             + L  N +  +  G          LR +DLS+  +S+    L       + SL +L L
Sbjct: 35  TEIRLEQNTIKVIPPGAFS---PYKKLRRIDLSNNQISE----LAPDAFQGLRSLNSLVL 87

Query: 231 EQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIP-DAPGPMISLR 289
               +   P     F  L    SL+ L L+ N +             +  DA   + +L 
Sbjct: 88  YGNKITELPK--SLFEGL---FSLQLLLLNANKIN-----------CLRVDAFQDLHNLN 131

Query: 290 TLTLSDNELDGEIPKFFQNMFKLEGLSLRGN 320
            L+L DN+L       F  +  ++ + L  N
Sbjct: 132 LLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 26/112 (23%), Positives = 43/112 (38%), Gaps = 17/112 (15%)

Query: 220 DKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIP 279
                L+ + L    +        +F  L    SL +L L  N +T  +   LF      
Sbjct: 53  SPYKKLRRIDLSNNQISELAP--DAFQGL---RSLNSLVLYGNKIT-ELPKSLFE----- 101

Query: 280 DAPGPMISLRTLTLSDNELDGEIPKF-FQNMFKLEGLSLRGNSLEGVISEHF 330
                + SL+ L L+ N++   +    FQ++  L  LSL  N L+ +    F
Sbjct: 102 ----GLFSLQLLLLNANKI-NCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTF 148

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 41.9 bits (99), Expect = 4e-04
 Identities = 31/127 (24%), Positives = 56/127 (44%), Gaps = 1/127 (0%)

Query: 453 LDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGEL 512
           + L  N +    P  +  +  LR ++L+NN  S   P++   L+ + +L L+ N  +   
Sbjct: 37  IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELP 96

Query: 513 PSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQ 572
            SL +    L+++ L  N I+  +     + L NL +L L  N+           L  IQ
Sbjct: 97  KSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQ 155

Query: 573 ILDLSLN 579
            + L+ N
Sbjct: 156 TMHLAQN 162

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 56.6 bits (137), Expect = 1e-08
 Identities = 45/312 (14%), Positives = 86/312 (27%), Gaps = 62/312 (19%)

Query: 118 ALLKLHYLRHLDLSFNNFS---GSQIPMFIGSLSKLEYLDL---FAASFSGPIPP----- 166
            LL+   ++ + LS N         +   I S   LE  +    F       IP      
Sbjct: 27  VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLL 86

Query: 167 --LLGNLSRLQYLSLGYNKLLRAGNL---DWISQLFSLRYLDLSSCNLS----------- 210
              L    +L  + L  N           D++S+   L +L L +  L            
Sbjct: 87  LQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARAL 146

Query: 211 KSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLT-ASIY 269
           +     ++    P L+++   +  L+       +     S   L T+ +  N +    I 
Sbjct: 147 QELAVNKKAKNAPPLRSIICGRNRLENGSMKEWA-KTFQSHRLLHTVKMVQNGIRPEGI- 204

Query: 270 PWLFNVSSIPDAPGPMISLRTLTLSDNELDGE----IPKFFQNMFKLEGLSLRGNSL--E 323
                   + +       L+ L L DN         +    ++   L  L L    L   
Sbjct: 205 -----EHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSAR 259

Query: 324 GV--ISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAGISD----SIPDWFSDTSHK 377
           G   + +             +             L +    I      ++     +    
Sbjct: 260 GAAAVVDA-------FSKLEN--------IGLQTLRLQYNEIELDAVRTLKTVIDEKMPD 304

Query: 378 LADLNFSHNQMT 389
           L  L  + N+ +
Sbjct: 305 LLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 55.9 bits (135), Expect = 3e-08
 Identities = 61/381 (16%), Positives = 105/381 (27%), Gaps = 78/381 (20%)

Query: 197 FSLRYLDLSSCNLSKS--TDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSL 254
           FS+    L    ++          + +  S+K + L    +  +     S  ++ S   L
Sbjct: 4   FSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLS-ENIASKKDL 62

Query: 255 ETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGE----IPKFFQNMF 310
           E    S              +  +  A      L T+ LSDN         +  F     
Sbjct: 63  EIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHT 122

Query: 311 KLEGLSLRGNSL--EGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAGISDSIP 368
            LE L L  N L  +                                  I+ A + +   
Sbjct: 123 PLEHLYLHNNGLGPQAGAK------------------------------IARA-LQELAV 151

Query: 369 DWFSDTSHKLADLNFSHNQMTGRFPNYISSMFI----LESPGIDISSNHL--EGPSP--- 419
           +  +  +  L  +    N++        +  F     L +  + +  N +  EG      
Sbjct: 152 NKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHT--VKMVQNGIRPEGIEHLLL 209

Query: 420 -SLPSNAF--YIDLSKNKFSGP-ISFLCSF--SGQNLVYLDLSSNLLSGK--------LP 465
             L        +DL  N F+    S L     S  NL  L L+  LLS +          
Sbjct: 210 EGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFS 269

Query: 466 DCWLQFNMLRILNLANNNFSGK----IPNSCGYLQKMLT-LSLHHNNFS------GELPS 514
               +   L+ L L  N         +          L  L L+ N FS       E+  
Sbjct: 270 KL--ENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIRE 327

Query: 515 LLKNFTHLRVVALEENSISGN 535
           +        +  L++     +
Sbjct: 328 VFSTRGRGELDELDDMEELTD 348

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 55.1 bits (133), Expect = 5e-08
 Identities = 53/238 (22%), Positives = 83/238 (34%), Gaps = 38/238 (15%)

Query: 115 LNPALLKLHYLRHLDLSFNNFS---GSQIPMFIGSLSKLEYLDLF-------------AA 158
           L  ALLK   L  + LS N F       +  F+   + LE+L L               A
Sbjct: 86  LLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARA 145

Query: 159 SFSGPIPPLLGNLSRLQYLSLGYNKLLRAGNLDWISQLF----SLRYLDLSSCNLSKS-- 212
                +     N   L+ +  G N+L     +   ++ F     L  + +    +     
Sbjct: 146 LQELAVNKKAKNAPPLRSIICGRNRLENGS-MKEWAKTFQSHRLLHTVKMVQNGIRPEGI 204

Query: 213 TDWLQEVDKI-PSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPW 271
              L E       LK L L+        +   +   L S P+L  LGL+   L+A     
Sbjct: 205 EHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA-IALKSWPNLRELGLNDCLLSAR---- 259

Query: 272 LFNVSSIPDA--PGPMISLRTLTLSDNELDGEIPKFF-----QNMFKLEGLSLRGNSL 322
               +++ DA      I L+TL L  NE++ +  +       + M  L  L L GN  
Sbjct: 260 --GAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 48.6 bits (116), Expect = 6e-06
 Identities = 47/335 (14%), Positives = 89/335 (26%), Gaps = 91/335 (27%)

Query: 287 SLRTLTLSDNELDGE----IPKFFQNMFKLEGLSLRGNSL--EG--VISEHFFSNFSYLK 338
           S+   +L  + +  E    +         ++ + L GN++  E    +SE+         
Sbjct: 5   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSEN--------- 55

Query: 339 MGPHFPKWLQTQKHFSVLDISSAGISDSIPDWFSDTSH---------KLADLNFSHNQMT 389
                   + ++K   + + S         +                KL  +  S N   
Sbjct: 56  --------IASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG 107

Query: 390 GRFPNYISSMFILESPGIDISSN-HLEGPSPSLPSNAFYIDLSKNKFSGPISFLCSFSGQ 448
                 +            +S +  LE           ++ L  N            +G 
Sbjct: 108 PTAQEPLIDF---------LSKHTPLE-----------HLYLHNNGLG-------PQAGA 140

Query: 449 NLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKML-------TL 501
            +     +  L    +         LR +    N        S     K         T+
Sbjct: 141 KI-----ARALQELAVNKKAKNAPPLRSIICGRNRLE---NGSMKEWAKTFQSHRLLHTV 192

Query: 502 SLHHNNFSGE-----LPSLLKNFTHLRVVALEENSISGNIPAWIGESLL---NLVVLDLR 553
            +  N    E     L   L     L+V+ L++N+ +    + +  +L    NL  L L 
Sbjct: 193 KMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLN 252

Query: 554 SNRFYGK------IPFQLCHLADIQILDLSLNNIS 582
                 +        F       +Q L L  N I 
Sbjct: 253 DCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE 287

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 38/295 (12%), Positives = 78/295 (26%), Gaps = 78/295 (26%)

Query: 474 LRILNLANNNFSGKIPNSCGYLQKML-------TLSLHHNNFSGE----LPSLLKNFTHL 522
           +   +L  +  +         +  +L        + L  N    E    L   + +   L
Sbjct: 6   IEGKSLKLDAIT---TEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDL 62

Query: 523 RVVALEENSISGNIPAW------IGESLL---NLVVLDLRSNRF--YGKIPF--QLCHLA 569
            +    +                + ++LL    L  + L  N F    + P    L    
Sbjct: 63  EIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHT 122

Query: 570 DIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVL 629
            ++ L L  N +                      +    + A+                 
Sbjct: 123 PLEHLYLHNNGLG-------------------PQAGAKIARALQELA------------- 150

Query: 630 LTWKGSEYEYKNTLGLVKSVDLSSNKLGGE----VPEEIMDLVGLIGLNLSRNNLTGY-I 684
                 + +    L   +S+    N+L         +       L  + + +N +    I
Sbjct: 151 ---VNKKAKNAPPL---RSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGI 204

Query: 685 TPKIGQL----QSLDFLDLSRNQFSG----GIPSSLSQVNRLSVMDLSHNNLSGK 731
              + +     Q L  LDL  N F+      +  +L     L  + L+   LS +
Sbjct: 205 EHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSAR 259

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 55.5 bits (134), Expect = 4e-08
 Identities = 36/217 (16%), Positives = 64/217 (29%), Gaps = 36/217 (16%)

Query: 118 ALLKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYL 177
           +   L  LR L+L+    +  +       ++ +                L      L  +
Sbjct: 67  SAEVLSSLRQLNLAGVRMTPVKCT----VVAAV----------------LGSGRHALDEV 106

Query: 178 SLGYNKLLRAGNLDWISQLFSLRYLDLSSCNLS-KSTDWLQEVDKIP--SLKTLYLEQCD 234
           +L   +L  AG    +      R L L   +L  ++   L+++       + TL L    
Sbjct: 107 NLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNP 166

Query: 235 LQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLS 294
           L            L  + S+  L L +  L          +  +         L+ L ++
Sbjct: 167 LTAAGVAVLM-EGLAGNTSVTHLSLLHTGLGDE------GLELLAAQLDRNRQLQELNVA 219

Query: 295 DNELDGEIPKFFQNMFK----LEGLSLRGNSL--EGV 325
            N              +    LE L L  N L  EG 
Sbjct: 220 YNGAGDTAALALARAAREHPSLELLHLYFNELSSEGR 256

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 42.4 bits (100), Expect = 4e-04
 Identities = 31/162 (19%), Positives = 53/162 (32%), Gaps = 36/162 (22%)

Query: 448 QNLVYLDLSSNLLSGKLPDCW------LQFNM--LRILNLANNNFSGKIPNSCGYLQKML 499
            +L  L+L+   ++   P         L      L  +NLA+       P     L  + 
Sbjct: 72  SSLRQLNLAGVRMT---PVKCTVVAAVLGSGRHALDEVNLASCQLD---PAGLRTLLPVF 125

Query: 500 T----LSLHHNNFSGE----LPSLLK-NFTHLRVVALEENSISGNIPAWIGESLL---NL 547
                L L  N+   E    L  LL  +   +  + L  N ++    A + E L    ++
Sbjct: 126 LRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSV 185

Query: 548 VVLDLRSNRFYGKIPFQLCHLAD-------IQILDLSLNNIS 582
             L L       +    L  LA        +Q L+++ N   
Sbjct: 186 THLSLLHTGLGDE---GLELLAAQLDRNRQLQELNVAYNGAG 224

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 52.4 bits (126), Expect = 6e-08
 Identities = 27/135 (20%), Positives = 49/135 (36%), Gaps = 11/135 (8%)

Query: 427 YIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSG 486
            +D  K+           F   NL +L L +  L   + +   +   L+ L L+ N   G
Sbjct: 30  VLDNCKSNDGKIEGLTAEF--VNLEFLSLINVGLI-SVSNLP-KLPKLKKLELSENRIFG 85

Query: 487 KIPNSCGYLQKMLTLSLHHNNFSGELPSL--LKNFTHLRVVALEENSISGNIP---AWIG 541
            +      L  +  L+L  N    ++ +L  LK    L+ + L    ++ N+      + 
Sbjct: 86  GLDMLAEKLPNLTHLNLSGNKLK-DISTLEPLKKLECLKSLDLFNCEVT-NLNDYRESVF 143

Query: 542 ESLLNLVVLDLRSNR 556
           + L  L  LD     
Sbjct: 144 KLLPQLTYLDGYDRE 158

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 51.7 bits (124), Expect = 8e-08
 Identities = 32/131 (24%), Positives = 54/131 (41%), Gaps = 4/131 (3%)

Query: 99  DIQTRVMSGNASLRGTLNPALLKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAA 158
            ++  V+    S  G +     +   L  L L         +   +  L KL+ L+L   
Sbjct: 25  AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI--SVS-NLPKLPKLKKLELSEN 81

Query: 159 SFSGPIPPLLGNLSRLQYLSLGYNKLLRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQE 218
              G +  L   L  L +L+L  NKL     L+ + +L  L+ LDL +C ++   D+ + 
Sbjct: 82  RIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRES 141

Query: 219 V-DKIPSLKTL 228
           V   +P L  L
Sbjct: 142 VFKLLPQLTYL 152

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 8/88 (9%)

Query: 497 KMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSIS--GNIPAWIGESLLNLVVLDLRS 554
           + L L    +N  G++  L   F +L  ++L    +    N+P      L  L  L+L  
Sbjct: 27  RELVLDNCKSN-DGKIEGLTAEFVNLEFLSLINVGLISVSNLP-----KLPKLKKLELSE 80

Query: 555 NRFYGKIPFQLCHLADIQILDLSLNNIS 582
           NR +G +      L ++  L+LS N + 
Sbjct: 81  NRIFGGLDMLAEKLPNLTHLNLSGNKLK 108

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 30/119 (25%), Positives = 44/119 (36%), Gaps = 9/119 (7%)

Query: 468 WLQFNMLRILNLANNNFS-GKIPNSCGYLQKMLTLSLHHNNFSGELPSL--LKNFTHLRV 524
                 +R L L N   + GKI         +  LSL +      L S+  L     L+ 
Sbjct: 20  NRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG----LISVSNLPKLPKLKK 75

Query: 525 VALEENSISGNIPAWIGESLLNLVVLDLRSNRFYG-KIPFQLCHLADIQILDLSLNNIS 582
           + L EN I       + E L NL  L+L  N+         L  L  ++ LDL    ++
Sbjct: 76  LELSENRIF-GGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVT 133

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.5 bits (95), Expect = 6e-04
 Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 3/85 (3%)

Query: 646 VKSVDLSSNKLGGEVPEEIMD-LVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQF 704
           V+ + L + K      E +    V L  L+L    L       + +L  L  L+LS N+ 
Sbjct: 26  VRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI--SVSNLPKLPKLKKLELSENRI 83

Query: 705 SGGIPSSLSQVNRLSVMDLSHNNLS 729
            GG+     ++  L+ ++LS N L 
Sbjct: 84  FGGLDMLAEKLPNLTHLNLSGNKLK 108

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 53.8 bits (130), Expect = 7e-08
 Identities = 46/169 (27%), Positives = 72/169 (42%), Gaps = 34/169 (20%)

Query: 170 NLSRLQYLSLGYNKL--LRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEV-----DKI 222
            L++L+ L L  NKL  L AG      +L +L  L ++          LQ +     D++
Sbjct: 59  RLTKLRLLYLNDNKLQTLPAGIFK---ELKNLETLWVTDN-------KLQALPIGVFDQL 108

Query: 223 PSLKTLYLEQCDLQ-LQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDA 281
            +L  L L++  L+ L P +   F  L     L  L L YN L  S+   +F+       
Sbjct: 109 VNLAELRLDRNQLKSLPPRV---FDSL---TKLTYLSLGYNELQ-SLPKGVFD------- 154

Query: 282 PGPMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHF 330
              + SL+ L L +N+L       F  + +L+ L L  N L+ V    F
Sbjct: 155 --KLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAF 201

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 49.6 bits (119), Expect = 1e-06
 Identities = 52/207 (25%), Positives = 75/207 (36%), Gaps = 38/207 (18%)

Query: 501 LSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGK 560
           L L  N  S          T LR++ L +N +   +PA I + L NL  L +  N+    
Sbjct: 42  LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKL-QA 99

Query: 561 IP---FQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQER-SYNSSAITFSYAVPSRT 616
           +P   F    L ++  L L  N +    P+ F++ T +T     YN              
Sbjct: 100 LPIGVFD--QLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN------------EL 145

Query: 617 TMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMD-LVGLIGLNL 675
             LP  +F                + L  +K + L +N+L   VPE   D L  L  L L
Sbjct: 146 QSLPKGVF----------------DKLTSLKELRLYNNQL-KRVPEGAFDKLTELKTLKL 188

Query: 676 SRNNLTGYITPKIGQLQSLDFLDLSRN 702
             N L          L+ L  L L  N
Sbjct: 189 DNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 47.3 bits (113), Expect = 8e-06
 Identities = 51/217 (23%), Positives = 79/217 (36%), Gaps = 57/217 (26%)

Query: 569 ADIQILDLSLNNISGNIPKCFNNFTAMTQER-SYNSSAITFSYAVPSRTTMLPVHIFFDI 627
           AD + LDL  N +S    K F+  T +     + N            +   LP  IF ++
Sbjct: 37  ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN------------KLQTLPAGIFKEL 84

Query: 628 VLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMD-LVGLIGLNLSRNNLTGYITP 686
             L                 ++ ++ NKL   +P  + D LV L  L L RN L   + P
Sbjct: 85  KNLE----------------TLWVTDNKL-QALPIGVFDQLVNLAELRLDRNQLK-SLPP 126

Query: 687 KI-GQLQSLDFLDLSRNQFSGGIPS----SLSQVNRLSVMDLSHNNLSGKIPTGT----- 736
           ++   L  L +L L  N+    +P      L+ +  L    L +N L  ++P G      
Sbjct: 127 RVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELR---LYNNQLK-RVPEGAFDKLT 181

Query: 737 ----------QLQSFNASVYDGNPELCGLPLPSKCWD 763
                     QL+      +D   +L  L L    WD
Sbjct: 182 ELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 44.6 bits (106), Expect = 7e-05
 Identities = 48/156 (30%), Positives = 69/156 (44%), Gaps = 26/156 (16%)

Query: 121 KLHYLRHLDLSFNNFSGSQIP--MFIGSLSKLEYLDLFAASFSGPIPP-LLGNLSRLQYL 177
           +L  L  L ++ N      +P  +F   L  L  L L        +PP +  +L++L YL
Sbjct: 83  ELKNLETLWVTDNKLQ--ALPIGVFDQ-LVNLAELRLDRNQLKS-LPPRVFDSLTKLTYL 138

Query: 178 SLGYNKL--LRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDL 235
           SLGYN+L  L  G  D   +L SL+ L L +  L +  +     DK+  LKTL L+   L
Sbjct: 139 SLGYNELQSLPKGVFD---KLTSLKELRLYNNQLKRVPEGA--FDKLTELKTLKLDNNQL 193

Query: 236 QLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPW 271
           +  P    +F  L     L+ L L  N       PW
Sbjct: 194 KRVP--EGAFDSL---EKLKMLQLQEN-------PW 217

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 41.1 bits (97), Expect = 8e-04
 Identities = 38/191 (19%), Positives = 66/191 (34%), Gaps = 33/191 (17%)

Query: 381 LNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSLPSNAF-------YIDLSKN 433
           L+   N+++         +  L    + ++ N L+    +LP+  F        + ++ N
Sbjct: 42  LDLQSNKLSSLPSKAFHRLTKLRL--LYLNDNKLQ----TLPAGIFKELKNLETLWVTDN 95

Query: 434 K--------FSGPISFLCSFSGQNLVYLDLSSNLLSGKLP-DCWLQFNMLRILNLANNNF 484
           K        F   +         NL  L L  N L   LP   +     L  L+L  N  
Sbjct: 96  KLQALPIGVFDQLV---------NLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNEL 145

Query: 485 SGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESL 544
                     L  +  L L++N             T L+ + L+ N +   +P    +SL
Sbjct: 146 QSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSL 204

Query: 545 LNLVVLDLRSN 555
             L +L L+ N
Sbjct: 205 EKLKMLQLQEN 215

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 52.4 bits (126), Expect = 9e-08
 Identities = 28/117 (23%), Positives = 51/117 (43%), Gaps = 8/117 (6%)

Query: 115 LNPALLKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRL 174
           ++  L  L   +HL LS NN    +I   +  +  L  L L        I  L      L
Sbjct: 40  MDATLSTLKACKHLALSTNNI--EKI-SSLSGMENLRILSLGRNLIKK-IENLDAVADTL 95

Query: 175 QYLSLGYNKLLRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLE 231
           + L + YN++    +L  I +L +LR L +S+  ++   + + ++  +  L+ L L 
Sbjct: 96  EELWISYNQI---ASLSGIEKLVNLRVLYMSNNKITNWGE-IDKLAALDKLEDLLLA 148

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 51.2 bits (123), Expect = 2e-07
 Identities = 27/133 (20%), Positives = 49/133 (36%), Gaps = 22/133 (16%)

Query: 164 IPPLLGNLSRLQYLSLGYNKLLRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIP 223
           +   L  L   ++L+L  N + +  +L     + +LR L L    + K  +         
Sbjct: 40  MDATLSTLKACKHLALSTNNIEKISSLS---GMENLRILSLGRNLIKKIENLDA---VAD 93

Query: 224 SLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPG 283
           +L+ L++    +        S S +    +L  L +S N +T        N   I D   
Sbjct: 94  TLEELWISYNQI-------ASLSGIEKLVNLRVLYMSNNKIT--------NWGEI-DKLA 137

Query: 284 PMISLRTLTLSDN 296
            +  L  L L+ N
Sbjct: 138 ALDKLEDLLLAGN 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 49.7 bits (119), Expect = 7e-07
 Identities = 29/134 (21%), Positives = 46/134 (34%), Gaps = 18/134 (13%)

Query: 429 DLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKI 488
            LS N     IS L     +NL  L L  NL+  K+ +     + L  L ++ N  +  +
Sbjct: 54  ALSTNNIEK-ISSLSGM--ENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA-SL 108

Query: 489 PNSCGYLQKMLTLSLHHNNFSGELPSL--LKNFTHLRVVALEENSISGNIPAWIGES--- 543
                 L  +  L + +N  +     +  L     L  + L  N +  +       S   
Sbjct: 109 SG-IEKLVNLRVLYMSNNKIT-NWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYR 166

Query: 544 ------LLNLVVLD 551
                 L NL  LD
Sbjct: 167 IEVVKRLPNLKKLD 180

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 43.9 bits (104), Expect = 6e-05
 Identities = 30/121 (24%), Positives = 44/121 (36%), Gaps = 18/121 (14%)

Query: 119 LLKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFA---ASFSGPIPPLLGNLSRLQ 175
           L  +  LR L L  N     +I         LE L +     AS SG     +  L  L+
Sbjct: 66  LSGMENLRILSLGRNLIK--KIENLDAVADTLEELWISYNQIASLSG-----IEKLVNLR 118

Query: 176 YLSLGYNKLLRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVD--------KIPSLKT 227
            L +  NK+   G +D ++ L  L  L L+   L                   ++P+LK 
Sbjct: 119 VLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKK 178

Query: 228 L 228
           L
Sbjct: 179 L 179

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 31/144 (21%), Positives = 51/144 (35%), Gaps = 29/144 (20%)

Query: 449 NLVYLDLSSNLLS-----GKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSL 503
              +L LS+N +        +         LRIL+L  N    KI N       +  L +
Sbjct: 49  ACKHLALSTNNIEKISSLSGME-------NLRILSLGRNLIK-KIENLDAVADTLEELWI 100

Query: 504 HHNNFSGELPSL--LKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKI 561
            +N  +    SL  ++   +LRV+ +  N I+         +L  L  L L  N  Y   
Sbjct: 101 SYNQIA----SLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDY 156

Query: 562 PFQ----------LCHLADIQILD 575
                        +  L +++ LD
Sbjct: 157 KENNATSEYRIEVVKRLPNLKKLD 180

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 40.8 bits (96), Expect = 7e-04
 Identities = 25/107 (23%), Positives = 45/107 (42%), Gaps = 7/107 (6%)

Query: 450 LVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFS 509
            V L      +  K+          + L L+ NN   KI +  G ++ +  LSL  N   
Sbjct: 27  KVELHGMIPPIE-KMDATLSTLKACKHLALSTNNIE-KISSLSG-MENLRILSLGRNLIK 83

Query: 510 GELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNR 556
            ++ +L      L  + +  N I+ ++     E L+NL VL + +N+
Sbjct: 84  -KIENLDAVADTLEELWISYNQIA-SLSGI--EKLVNLRVLYMSNNK 126

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 50.8 bits (122), Expect = 1e-07
 Identities = 32/132 (24%), Positives = 59/132 (44%), Gaps = 6/132 (4%)

Query: 99  DIQTRVMSGNASLRGTLNPALLKLHYLRHLDLSFNNFSG-SQIPMFIGSLSKLEYLDLFA 157
           D++  V+  + S  G L     +   L  L       +  + +P     L+KL+ L+L  
Sbjct: 18  DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLP----KLNKLKKLELSD 73

Query: 158 ASFSGPIPPLLGNLSRLQYLSLGYNKLLRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQ 217
              SG +  L      L +L+L  NK+     ++ + +L +L+ LDL +C ++   D+ +
Sbjct: 74  NRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRE 133

Query: 218 EV-DKIPSLKTL 228
            V   +P L  L
Sbjct: 134 NVFKLLPQLTYL 145

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 49.7 bits (119), Expect = 3e-07
 Identities = 26/130 (20%), Positives = 53/130 (40%), Gaps = 11/130 (8%)

Query: 427 YIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSG 486
            +D S++           F  + L +L   +  L+  + +   + N L+ L L++N  SG
Sbjct: 23  VLDNSRSNEGKLEGLTDEF--EELEFLSTINVGLT-SIANLP-KLNKLKKLELSDNRVSG 78

Query: 487 KIPNSCGYLQKMLTLSLHHNNFSGELPSL--LKNFTHLRVVALEENSISGNIP---AWIG 541
            +         +  L+L  N    +L ++  LK   +L+ + L    ++ N+      + 
Sbjct: 79  GLEVLAEKCPNLTHLNLSGNKIK-DLSTIEPLKKLENLKSLDLFNCEVT-NLNDYRENVF 136

Query: 542 ESLLNLVVLD 551
           + L  L  LD
Sbjct: 137 KLLPQLTYLD 146

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 45.4 bits (108), Expect = 8e-06
 Identities = 31/104 (29%), Positives = 41/104 (39%), Gaps = 3/104 (2%)

Query: 452 YLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGE 511
            LD S +   GKL     +F  L  L+  N   +  I N    L K+  L L  N  SG 
Sbjct: 23  VLDNSRSNE-GKLEGLTDEFEELEFLSTINVGLT-SIAN-LPKLNKLKKLELSDNRVSGG 79

Query: 512 LPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSN 555
           L  L +   +L  + L  N I         + L NL  LDL + 
Sbjct: 80  LEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 22/86 (25%), Positives = 34/86 (39%), Gaps = 8/86 (9%)

Query: 499 LTLSLHHNNFSGELPSLLKNFTHLRVVALEENSIS--GNIPAWIGESLLNLVVLDLRSNR 556
           L L    +N  G+L  L   F  L  ++     ++   N+P      L  L  L+L  NR
Sbjct: 22  LVLDNSRSN-EGKLEGLTDEFEELEFLSTINVGLTSIANLP-----KLNKLKKLELSDNR 75

Query: 557 FYGKIPFQLCHLADIQILDLSLNNIS 582
             G +        ++  L+LS N I 
Sbjct: 76  VSGGLEVLAEKCPNLTHLNLSGNKIK 101

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 23/130 (17%), Positives = 48/130 (36%), Gaps = 20/130 (15%)

Query: 170 NLSRLQYLSLGYNKLLRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLY 229
             S ++ L L  ++           +   L +L   +  L+     +  + K+  LK L 
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS----IANLPKLNKLKKLE 70

Query: 230 LEQCDL-QLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISL 288
           L    +      +          P+L  L LS N +         ++S+I +    + +L
Sbjct: 71  LSDNRVSGGLEVLAEKC------PNLTHLNLSGNKIK--------DLSTI-EPLKKLENL 115

Query: 289 RTLTLSDNEL 298
           ++L L + E+
Sbjct: 116 KSLDLFNCEV 125

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.0 bits (94), Expect = 7e-04
 Identities = 23/115 (20%), Positives = 43/115 (37%), Gaps = 16/115 (13%)

Query: 224 SLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPG 283
            +K L L+      +    +     +    LE L      LT        +++++P    
Sbjct: 18  DVKELVLDNS----RSNEGKLEGLTDEFEELEFLSTINVGLT--------SIANLPK--- 62

Query: 284 PMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLK 338
            +  L+ L LSDN + G +    +    L  L+L GN ++ + +         LK
Sbjct: 63  -LNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLK 116

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 53.9 bits (130), Expect = 1e-07
 Identities = 51/332 (15%), Positives = 103/332 (31%), Gaps = 59/332 (17%)

Query: 118 ALLKLHYLRHLDLSFNNFSGSQI----PMFIGSLSKLEYLDLFAASFSGP-----IPPLL 168
                H +  LDLS NN            F  + + +  L+L   S         +  L 
Sbjct: 17  FTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILA 76

Query: 169 GNLSRLQYLSLGYNKLLRAGNLDWISQLF-----SLRYLDLSSCNLSKS-----TDWLQE 218
              + +  L+L  N L      D + +       ++  LDL   + S             
Sbjct: 77  AIPANVTSLNLSGNFLSYKS-SDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSN 135

Query: 219 VDKIPSLKTLYLEQCDLQLQPTIH--RSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVS 276
           +    S+ +L L   DL ++ +    +  + + +  ++ +L L  NNL +       N +
Sbjct: 136 LPA--SITSLNLRGNDLGIKSSDELIQILAAIPA--NVNSLNLRGNNLASK------NCA 185

Query: 277 SIPDA-PGPMISLRTLTLSDNELDGEIPKFFQNMFK-----LEGLSLRGNSLEGVISEHF 330
            +         S+ +L LS N L  +       +F      +  L+L  N L G   E+ 
Sbjct: 186 ELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENL 245

Query: 331 FSNFSYLKMGPHFPKWLQTQKHFSVLDISSAGISDSIPDWFSD------TSHKLADLNFS 384
                             + KH   + +    + +   +             K+  ++ +
Sbjct: 246 KL-------------LKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKN 292

Query: 385 HNQMTGRFPNYISSMFILESPGIDISSNHLEG 416
             ++       IS++  +           L  
Sbjct: 293 GKEIHPSHSIPISNL--IRELSGKADVPSLLN 322

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 52.0 bits (125), Expect = 4e-07
 Identities = 47/286 (16%), Positives = 81/286 (28%), Gaps = 56/286 (19%)

Query: 347 LQTQKHFSVLDISSAGISDS----IPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFIL 402
                  + LD+S   +       +   F++T   +  LN S N +  +  + +  +   
Sbjct: 18  TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA 77

Query: 403 ESPGI---DISSNHLEGPSPSLPSNAF--------YIDLSKNKFSGP-ISFLCS---FSG 447
               +   ++S N L   S                 +DL  N FS    S          
Sbjct: 78  IPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLP 137

Query: 448 QNLVYLDLSSN--------LLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKML 499
            ++  L+L  N         L   L         +  LNL  NN +     +C  L K L
Sbjct: 138 ASITSLNLRGNDLGIKSSDELIQILAAIPAN---VNSLNLRGNNLA---SKNCAELAKFL 191

Query: 500 --------TLSLHHNNFSGE-----LPSLLKNFTHLRVVALEENSISGNIPAWIGESLL- 545
                   +L L  N    +              H+  + L  N + G     +      
Sbjct: 192 ASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDS 251

Query: 546 --NLVVLDLRSNRFYGKIPFQLCHLAD-------IQILDLSLNNIS 582
             +L  + L  +        Q   L         I ++D +   I 
Sbjct: 252 LKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 51.2 bits (123), Expect = 7e-07
 Identities = 54/352 (15%), Positives = 104/352 (29%), Gaps = 76/352 (21%)

Query: 448 QNLVYLDLSSNLLSGKLPDCW------LQFNM--LRILNLANNNFSGKIPNSCGYLQKML 499
             +  LDLS N L                     +  LNL+ N+       +   L ++L
Sbjct: 22  HGVTSLDLSLNNLY---SISTVELIQAFANTPASVTSLNLSGNSLG---FKNSDELVQIL 75

Query: 500 --------TLSLHHNNFSGE-----LPSLLKNFTHLRVVALEENSISGNIPAWIGESLLN 546
                   +L+L  N  S +     + +L      + V+ L  N  S    +   ++  N
Sbjct: 76  AAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSN 135

Query: 547 ----LVVLDLRSNRFYGK--------IPFQLCHLADIQILDLSLNNISGNIPKCFNNFTA 594
               +  L+LR N    K        +     ++     L+L  NN++            
Sbjct: 136 LPASITSLNLRGNDLGIKSSDELIQILAAIPANV---NSLNLRGNNLA------------ 180

Query: 595 MTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEY---EYKNTLGLVKSVDL 651
                  + +    +  + S    +   +     LL  K        + +    V S++L
Sbjct: 181 -------SKNCAELAKFLASIPASV-TSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNL 232

Query: 652 SSNKLGGEVPEEIMDLVG----LIGLNLSRNNLTG-------YITPKIGQLQSLDFLDLS 700
             N L G   E +  L      L  + L  + +          +      +Q +  +D +
Sbjct: 233 CLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKN 292

Query: 701 RNQFSGGIPSSLSQVNRLSVMDLSHNNLSGKIPTGTQLQSFNASVYDGNPEL 752
             +        +S + R         +L  +     Q    N    +   EL
Sbjct: 293 GKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDEL 344

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 52.3 bits (124), Expect = 3e-07
 Identities = 36/203 (17%), Positives = 66/203 (32%), Gaps = 18/203 (8%)

Query: 120 LKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSL 179
            +  +   +D      S  +       L  +  L+      +  +         L+ L +
Sbjct: 141 FEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEI 200

Query: 180 GYNKLLRAGNLDWI--SQLFSLRYLDLSSCNLSKSTD-------WLQEVDKIPSLKTLYL 230
               L  +  ++ I  S L +L  L L         D        L   D+ P+LK L +
Sbjct: 201 ISGGLPDSV-VEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGI 259

Query: 231 EQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRT 290
                + Q  +   F   +  P LET+ +S   LT            + D    +  L+ 
Sbjct: 260 VDA--EEQNVVVEMFLESDILPQLETMDISAGVLTDE------GARLLLDHVDKIKHLKF 311

Query: 291 LTLSDNELDGEIPKFFQNMFKLE 313
           + +  N L  E+ K  Q    ++
Sbjct: 312 INMKYNYLSDEMKKELQKSLPMK 334

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 49.2 bits (116), Expect = 4e-06
 Identities = 18/122 (14%), Positives = 40/122 (32%), Gaps = 14/122 (11%)

Query: 103 RVMSGNASLRGTLNPALLKLHYLRHLDLSF--NNFSGSQIPMFI------GSLSKLEYLD 154
            ++SG        +     L  L  L L     ++                    L++L 
Sbjct: 199 EIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLG 258

Query: 155 LFAASFSGPIPPLLGN---LSRLQYLSLGYNKLLRAGN---LDWISQLFSLRYLDLSSCN 208
           +  A     +  +      L +L+ + +    L   G    LD + ++  L+++++    
Sbjct: 259 IVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY 318

Query: 209 LS 210
           LS
Sbjct: 319 LS 320

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 42.6 bits (99), Expect = 4e-04
 Identities = 28/254 (11%), Positives = 59/254 (23%), Gaps = 16/254 (6%)

Query: 342 HFPKWLQTQKHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFI 401
           +F    + +K    L                    K+    ++ +         +    +
Sbjct: 42  NFSSAGEAEKAAGKLIAEKTKKGYVETLEEVAKEMKVEAKKYALSYDEAEEGVNLMDKIL 101

Query: 402 LESPGIDISSNHLEGPSPSLPSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLS 461
            +     +    +          +   D           F   F G         S +  
Sbjct: 102 KDKKLPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQ 161

Query: 462 GKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGE-----LPSLL 516
             L        +L  L +   N           L+   +L +             L S L
Sbjct: 162 VDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLK---SLEIISGGLPDSVVEDILGSDL 218

Query: 517 KNFTHLRVVALEENSISGN-----IPAWIGESLLNLVVLDLRSNRFYGKIPFQLCH---L 568
            N   L +    E+           P +  +   NL  L +        +         L
Sbjct: 219 PNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDIL 278

Query: 569 ADIQILDLSLNNIS 582
             ++ +D+S   ++
Sbjct: 279 PQLETMDISAGVLT 292

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 50.0 bits (120), Expect = 4e-07
 Identities = 28/110 (25%), Positives = 44/110 (40%), Gaps = 8/110 (7%)

Query: 122 LHYLRHLDLSFNNFSGSQIPMFIG--SLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSL 179
           L     +D S N     +I    G   L +L+ L +           L   L  L  L L
Sbjct: 41  LDQFDAIDFSDN-----EIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL 95

Query: 180 GYNKLLRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEV-DKIPSLKTL 228
             N L+  G+LD ++ L SL YL +    ++    +   V  K+P ++ L
Sbjct: 96  TNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVL 145

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 49.3 bits (118), Expect = 8e-07
 Identities = 27/123 (21%), Positives = 46/123 (37%), Gaps = 10/123 (8%)

Query: 119 LLKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPL--LGNLSRLQY 176
                  R LDL         I     +L + + +D    S +  I  L     L RL+ 
Sbjct: 15  YTNAVRDRELDLRGYKIP--VIENLGATLDQFDAIDF---SDNE-IRKLDGFPLLRRLKT 68

Query: 177 LSLGYNKLLRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQ 236
           L +  N++ R G       L  L  L L++ +L +  D L  +  + SL  L + +  + 
Sbjct: 69  LLVNNNRICRIGE-GLDQALPDLTELILTNNSLVELGD-LDPLASLKSLTYLCILRNPVT 126

Query: 237 LQP 239
            + 
Sbjct: 127 NKK 129

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 24/111 (21%), Positives = 42/111 (37%), Gaps = 9/111 (8%)

Query: 448 QNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNN 507
                +D S N +  KL D +     L+ L + NN            L  +  L L +N+
Sbjct: 42  DQFDAIDFSDNEIR-KL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNS 99

Query: 508 FSGELPSL--LKNFTHLRVVALEENSISGNIP---AWIGESLLNLVVLDLR 553
              EL  L  L +   L  + +  N ++ N      ++   +  + VLD +
Sbjct: 100 LV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQ 148

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 47.0 bits (112), Expect = 4e-06
 Identities = 27/132 (20%), Positives = 46/132 (34%), Gaps = 22/132 (16%)

Query: 168 LGNLSRLQYLSLGYNKLLRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKT 227
             N  R + L L   K+    NL   + L     +D S   + K    L     +  LKT
Sbjct: 15  YTNAVRDRELDLRGYKIPVIENLG--ATLDQFDAIDFSDNEIRK----LDGFPLLRRLKT 68

Query: 228 LYLEQCDLQ-LQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMI 286
           L +    +  +   + ++       P L  L L+ N+L          +  + D    + 
Sbjct: 69  LLVNNNRICRIGEGLDQAL------PDLTELILTNNSLV--------ELGDL-DPLASLK 113

Query: 287 SLRTLTLSDNEL 298
           SL  L +  N +
Sbjct: 114 SLTYLCILRNPV 125

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 19/107 (17%), Positives = 39/107 (36%), Gaps = 3/107 (2%)

Query: 449 NLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNF 508
               LDL    +   + +     +    ++ ++N    K+      L+++ TL +++N  
Sbjct: 20  RDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KLDGF-PLLRRLKTLLVNNNRI 76

Query: 509 SGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSN 555
                 L +    L  + L  NS+          SL +L  L +  N
Sbjct: 77  CRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 43.9 bits (104), Expect = 4e-05
 Identities = 19/111 (17%), Positives = 33/111 (29%), Gaps = 14/111 (12%)

Query: 476 ILNLANNNFSGKIPNSCGY--LQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSIS 533
           ++ L        I  +  Y    +   L L        + +L         +   +N I 
Sbjct: 1   MVKLTAEL----IEQAAQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR 55

Query: 534 --GNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNIS 582
                P      L  L  L + +NR           L D+  L L+ N++ 
Sbjct: 56  KLDGFP-----LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV 101

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 40.8 bits (96), Expect = 6e-04
 Identities = 18/123 (14%), Positives = 41/123 (33%), Gaps = 24/123 (19%)

Query: 202 LDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSS-PSLETLGLS 260
           + L++  + ++     +       + L L    +           +L ++    + +  S
Sbjct: 2   VKLTAELIEQAA----QYTNAVRDRELDLRGYKIP-------VIENLGATLDQFDAIDFS 50

Query: 261 YNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGN 320
            N +          +   P     +  L+TL +++N +        Q +  L  L L  N
Sbjct: 51  DNEIR--------KLDGFP----LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNN 98

Query: 321 SLE 323
           SL 
Sbjct: 99  SLV 101

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 50.9 bits (121), Expect = 1e-06
 Identities = 22/112 (19%), Positives = 43/112 (38%), Gaps = 19/112 (16%)

Query: 189 NLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHR-SFSH 247
           +L  +    +L  L + +    +  +  +++  +  L+ L + +  L+    +   +F  
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLEL-RDLRGLGELRNLTIVKSGLR---FVAPDAFHF 78

Query: 248 LNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELD 299
               P L  L LS+N L            S+       +SL+ L LS N L 
Sbjct: 79  T---PRLSRLNLSFNALE-----------SLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 47.0 bits (111), Expect = 1e-05
 Identities = 19/100 (19%), Positives = 32/100 (32%), Gaps = 12/100 (12%)

Query: 237 LQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDN 296
            +     S  HL  + +L  L +        +                +  LR LT+  +
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDL---------RGLGELRNLTIVKS 66

Query: 297 ELDGEIPKF-FQNMFKLEGLSLRGNSLEGVISEHFFSNFS 335
            L   +    F    +L  L+L  N+LE  +S       S
Sbjct: 67  GLR-FVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLS 104

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.4 bits (99), Expect = 4e-04
 Identities = 21/103 (20%), Positives = 36/103 (34%), Gaps = 3/103 (2%)

Query: 653 SNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPK-IGQLQSLDFLDLSRNQFSGGIPSS 711
           +     +    +     L  L +       ++  + +  L  L  L + ++      P +
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDA 75

Query: 712 LSQVNRLSVMDLSHNNLSGKIPTGT-QLQSFNASVYDGNPELC 753
                RLS ++LS N L   +   T Q  S    V  GNP  C
Sbjct: 76  FHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLHC 117

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 50.7 bits (121), Expect = 2e-06
 Identities = 70/513 (13%), Positives = 147/513 (28%), Gaps = 73/513 (14%)

Query: 83  HVKVLDLHGTGRVKVLDIQTRVMSGNASLRGTLNPALLKLHYLRHLDLSFNNFSGSQIPM 142
           +++ L L G  R  + ++      G  +    +      L  L+ +       S   +  
Sbjct: 74  NLRSLKLKGKPRAAMFNLIPENWGGYVTP--WVTEISNNLRQLKSVHFRRMIVSDLDLDR 131

Query: 143 FIGS-LSKLEYLDLFAAS--FSGPIPPLLGNLSRLQYLSLGYNKLLRAGNLDWISQLF-- 197
              +    LE L L   S   +  +  ++ +  +++ L +  +         W+ +L   
Sbjct: 132 LAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKD-GKWLHELAQH 190

Query: 198 --SLRYLDLSSCNLSKSTDW-LQEVDKI-PSLKTLYLEQCDLQLQPTIHRSFSHLNSSPS 253
             SL  L+      +K +   L+ + +   SL ++ +   ++              ++ +
Sbjct: 191 NTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEI------LELVGFFKAAAN 244

Query: 254 LETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSD--NELDGEIPKFFQNMFK 311
           LE                L     +P+    ++  R L           E+P  F    +
Sbjct: 245 LEEFCGG----------SLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQ 294

Query: 312 LEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAGISDSIPDWF 371
           +  L L    LE             L+                VL+  +  I D   +  
Sbjct: 295 IRKLDLLYALLETEDHCTLIQKCPNLE----------------VLETRN-VIGDRGLEVL 337

Query: 372 SDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSLPSNAFYIDLS 431
           +    +L  L               +    +E     +S   L   +        Y+ + 
Sbjct: 338 AQYCKQLKRLRIERG----------ADEQGMEDEEGLVSQRGLIALAQGCQELE-YMAVY 386

Query: 432 KNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNS 491
            +  +           +NL    L        L          RI +L  +N    +   
Sbjct: 387 VSDITNESLESIGTYLKNLCDFRLVL------LDREE------RITDLPLDNGVRSLLIG 434

Query: 492 CGYLQKMLTLSLHHNNFSGE-LPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVL 550
           C  L++     L     +   L  + +   ++R + L     S            NL  L
Sbjct: 435 CKKLRR-FAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKL 493

Query: 551 DLRSNRFYGKIPFQLC-HLADIQILDLSLNNIS 582
           ++R   F  +        L  ++ L +     S
Sbjct: 494 EMRGCCFSERAIAAAVTKLPSLRYLWVQGYRAS 526

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 49.2 bits (117), Expect = 4e-06
 Identities = 68/469 (14%), Positives = 133/469 (28%), Gaps = 86/469 (18%)

Query: 118 ALLKLHYLRHLDLSF-NNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSR--- 173
           A  +   L  L L   + F+   +   +    K++ L +  +SFS      L  L++   
Sbjct: 133 AKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNT 192

Query: 174 -LQYLSLGYNKLLRAGNLD---WISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLY 229
            L+ L+    +  +    D         SL  + +    + +   + +    +       
Sbjct: 193 SLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGS 252

Query: 230 LEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLR 289
           L +        +   + +L     L  LGLS   +  +  P LF  ++          +R
Sbjct: 253 LNED-----IGMPEKYMNLVFPRKLCRLGLS--YMGPNEMPILFPFAA---------QIR 296

Query: 290 TLTLSDNEL-DGEIPKFFQNMFKLEGLSLRG----NSLEGVISEHFFSNFSYLKMGPHFP 344
            L L    L   +     Q    LE L  R       LE +    +      L++     
Sbjct: 297 KLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQ--YCKQLKRLRIERGAD 354

Query: 345 KWLQTQKHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILES 404
           +     +   V       ++            +L  +    + +T               
Sbjct: 355 EQGMEDEEGLVSQRGLIALAQGCQ--------ELEYMAVYVSDIT--------------- 391

Query: 405 PGIDISSNHLEGPSPSLPSNAFYIDLSKNKFSGPISFLCSFSG--------QNLVYLDLS 456
              + S   +     +L        L        I+ L   +G        + L      
Sbjct: 392 ---NESLESIGTYLKNLCD----FRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFY 444

Query: 457 SNLLSGKLPDCWLQF-----NMLRILNLANNNFSGK----IPNSCGYLQKMLTLSLHHNN 507
                G L D  L +       +R + L     S +        C  LQK   L +    
Sbjct: 445 LR--QGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQK---LEMRGCC 499

Query: 508 FSGE-LPSLLKNFTHLRVVALEENSISGNIPAW--IGESLLNLVVLDLR 553
           FS   + + +     LR + ++    S        +     N+ ++  R
Sbjct: 500 FSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR 548

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 44.5 bits (105), Expect = 1e-04
 Identities = 17/120 (14%), Positives = 36/120 (30%), Gaps = 4/120 (3%)

Query: 119 LLKLHYLRHLDLSFN--NFSGSQIPMFIGSLSKLEYLDLFAASFSGP-IPPLLGNLSRLQ 175
           L+    LR           +   +         + ++ L     S   +         LQ
Sbjct: 432 LIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQ 491

Query: 176 YLSLGYNKLLRAGNLDWISQLFSLRYLDLSSCNLSKS-TDWLQEVDKIPSLKTLYLEQCD 234
            L +             +++L SLRYL +     S +  D +Q      +++ +   +  
Sbjct: 492 KLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSRRVP 551

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 42.6 bits (100), Expect = 5e-04
 Identities = 25/163 (15%), Positives = 56/163 (34%), Gaps = 12/163 (7%)

Query: 107 GNASLRGTLNPALLKLHYLRHLDLSF-----NNFSGSQIPMFIGSLSKLEYLDLFAASFS 161
            N SL  ++   L  L   R + L       +    + +   +    KL     +     
Sbjct: 391 TNESLE-SIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGG 449

Query: 162 ---GPIPPLLGNLSRLQYLSLGYNKLLRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQE 218
                +  +      ++++ LGY      G +++     +L+ L++  C  S+       
Sbjct: 450 LTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERA-IAAA 508

Query: 219 VDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSY 261
           V K+PSL+ L+++    +   T            ++E +    
Sbjct: 509 VTKLPSLRYLWVQGY--RASMTGQDLMQMARPYWNIELIPSRR 549

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 51/173 (29%), Positives = 75/173 (43%), Gaps = 24/173 (13%)

Query: 151 EYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKL--LRAGNLDWISQLFSLRYLDLSSCN 208
           E LDL +   +         L++L +L+L YN+L  L AG  D    L  L  L L++  
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFD---DLTELGTLGLANNQ 94

Query: 209 LSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASI 268
           L+     +   D +  L  LYL    L+  P     F  L     L+ L L+ N L    
Sbjct: 95  LASLPLGV--FDHLTQLDKLYLGGNQLKSLP--SGVFDRL---TKLKELRLNTNQLQ--- 144

Query: 269 YPWLFNVSSIPD-APGPMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGN 320
                   SIP  A   + +L+TL+LS N+L       F  + KL+ ++L GN
Sbjct: 145 --------SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 44.2 bits (105), Expect = 8e-05
 Identities = 49/200 (24%), Positives = 85/200 (42%), Gaps = 29/200 (14%)

Query: 128 LDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRA 187
            +L   + +          L+ ++ +    +         +  L  ++YL+LG NKL   
Sbjct: 24  ANLKKKSVT--DAVTQNE-LNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI 78

Query: 188 GNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQ-LQPTIHRSFS 246
             L    +L +L YL L+   L    + +   DK+ +LK L L +  LQ L   +   F 
Sbjct: 79  SALK---ELTNLTYLILTGNQLQSLPNGV--FDKLTNLKELVLVENQLQSLPDGV---FD 130

Query: 247 HLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIPK-F 305
            L    +L  L L++N L  S+   +F+          + +L  L LS N+L   +P+  
Sbjct: 131 KLT---NLTYLNLAHNQLQ-SLPKGVFD---------KLTNLTELDLSYNQL-QSLPEGV 176

Query: 306 FQNMFKLEGLSLRGNSLEGV 325
           F  + +L+ L L  N L+ V
Sbjct: 177 FDKLTQLKDLRLYQNQLKSV 196

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 47/149 (31%), Positives = 61/149 (40%), Gaps = 24/149 (16%)

Query: 151 EYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKL--LRAGNLDWISQLFSLRYLDLSSCN 208
            YLDL   S       +   L+ L  L LG NKL  L  G  +   +L SL YL+LS+  
Sbjct: 31  TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFN---KLTSLTYLNLSTNQ 87

Query: 209 LSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASI 268
           L    + +   DK+  LK L L    LQ  P     F  L     L+ L L  N L    
Sbjct: 88  LQSLPNGV--FDKLTQLKELALNTNQLQSLP--DGVFDKL---TQLKDLRLYQNQLK--- 137

Query: 269 YPWLFNVSSIPD-APGPMISLRTLTLSDN 296
                   S+PD     + SL+ + L DN
Sbjct: 138 --------SVPDGVFDRLTSLQYIWLHDN 158

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 41.2 bits (97), Expect = 6e-04
 Identities = 36/148 (24%), Positives = 50/148 (33%), Gaps = 23/148 (15%)

Query: 175 QYLSLGYNKL--LRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQ 232
           Q L L  N++  L  G  D +  L   + L L S  L      +   D +  L  L L  
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINL---KELYLGSNQLGALPVGV--FDSLTQLTVLDLGT 97

Query: 233 CDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLT 292
             L + P+    F  L     L+ L +  N LT            +P     +  L  L 
Sbjct: 98  NQLTVLPS--AVFDRL---VHLKELFMCCNKLT-----------ELPRGIERLTHLTHLA 141

Query: 293 LSDNELDGEIPKFFQNMFKLEGLSLRGN 320
           L  N+L       F  +  L    L GN
Sbjct: 142 LDQNQLKSIPHGAFDRLSSLTHAYLFGN 169

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A Length = 267

 Score = 41.5 bits (97), Expect = 7e-04
 Identities = 30/123 (24%), Positives = 39/123 (31%), Gaps = 26/123 (21%)

Query: 223 PSLKTLYLEQCDLQLQPTIHRSFSHLNSS--------------PSLETLGLSYNNLTASI 268
            S + L L+                LN                P L +L LS N L    
Sbjct: 127 GSQQALDLKGLRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLY--- 183

Query: 269 YPWLFNVSSIPDAPGPMISLRTLTLSDNELD--GEIPKFFQNMFKLEGLSLRGNSLEGVI 326
                 +  +        +L+ L LS NEL    E+ K      KLE L L GNSL    
Sbjct: 184 -----RLDDMSSIVQKAPNLKILNLSGNELKSERELDKI--KGLKLEELWLDGNSLCDTF 236

Query: 327 SEH 329
            + 
Sbjct: 237 RDQ 239

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	850
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.98
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.98
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.96
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.96
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.96
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.95
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.95
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.94
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.94
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.94
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.93
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.93
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.93
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.92
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.92
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.92
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.92
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.91
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.91
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.91
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.91
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.9
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.9
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.9
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.9
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.89
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.88
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.88
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.88
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.87
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.87
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.87
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.86
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.86
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.86
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.86
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.86
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.85
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.85
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.83
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.82
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.82
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.82
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.82
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.81
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.81
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.79
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.77
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.77
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.77
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.76
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.76
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.75
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.75
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.75
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.74
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.74
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.74
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.73
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.73
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.72
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.71
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.71
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.71
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.7
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.69
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.68
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.65
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.64
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.63
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.62
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.61
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.59
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.57
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.56
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.56
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.56
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.52
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.47
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.46
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.46
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.46
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.45
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.42
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.41
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.39
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.35
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.3
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.25
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.21
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.2
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.2
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.2
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.9
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.89
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.83
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.71
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.61
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.55
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.51
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.39
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.34
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.28
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.88
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.6
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.25
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.98
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.85
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.48

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=1.2e-87  Score=810.67  Aligned_cols=693  Identities=31%  Similarity=0.431  Sum_probs=452.9

Q ss_pred             CCCCcHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCccccceEecCCCCCEEEEEcCCCCCcccchhhhhccCCCCCC
Q 048351           32 SIRCIEEERKALLKFKQGLVDEFGFLSSWGSEGEKKDCCNWRGVRCSNQTGHVKVLDLHGTGRVKVLDIQTRVMSGNASL  111 (850)
Q Consensus        32 ~~~~~~~~~~~Ll~~k~~~~~~~~~l~~W~~~~~~~~~c~w~gv~C~~~~~~v~~l~L~~~~~l~~l~l~~~~~~~~~~l  111 (850)
                      +..+.++||+||++||+++.||. .+++|+   .+++||+|+||+|+  .++|++++|++.                 .+
T Consensus         6 ~~~~~~~~~~all~~k~~~~~~~-~l~~W~---~~~~~C~w~gv~C~--~~~v~~L~L~~~-----------------~l   62 (768)
T 3rgz_A            6 PSQSLYREIHQLISFKDVLPDKN-LLPDWS---SNKNPCTFDGVTCR--DDKVTSIDLSSK-----------------PL   62 (768)
T ss_dssp             --CCHHHHHHHHHHHHTTCSCTT-SSTTCC---TTSCGGGSTTEEEE--TTEEEEEECTTS-----------------CC
T ss_pred             cccCCHHHHHHHHHHHhhCCCcc-cccCCC---CCCCCcCCcceEEC--CCcEEEEECCCC-----------------Cc
Confidence            44568899999999999999988 899997   46899999999998  689999999984                 45


Q ss_pred             ccc---ccccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCc--ccCCCCCCcEEEccCCCCCC
Q 048351          112 RGT---LNPALLKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPP--LLGNLSRLQYLSLGYNKLLR  186 (850)
Q Consensus       112 ~g~---l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~--~l~~l~~L~~L~Ls~N~l~~  186 (850)
                      .|.   +|+++.++++|+.++++.|.+.  .+|..++++++|++|+|++|.++|.+|.  .++++++|++|++++|.+..
T Consensus        63 ~g~~~~l~~~l~~L~~L~~l~~~~~~~~--~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~  140 (768)
T 3rgz_A           63 NVGFSAVSSSLLSLTGLESLFLSNSHIN--GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDF  140 (768)
T ss_dssp             CEEHHHHHHHTTTCTTCCEEECTTSCEE--ECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEEC
T ss_pred             CCccCccChhHhccCcccccCCcCCCcC--CCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCC
Confidence            555   5555555555555555555543  2445555555555555555555555555  55555555555555555432


Q ss_pred             CCCccccccCCCccEEeCCCCCCCCCcchhhh---hcCCCCCcEEEccCCCCCCCCCccccccccCCCCcccEEEccCCC
Q 048351          187 AGNLDWISQLFSLRYLDLSSCNLSKSTDWLQE---VDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNN  263 (850)
Q Consensus       187 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~---l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~N~  263 (850)
                      ......+.++++|++|++++|++++.  .+..   +.++++|++|++++|.+++..+      ...+ ++|++|++++|+
T Consensus       141 ~~~~~~~~~l~~L~~L~Ls~n~l~~~--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~------~~~l-~~L~~L~Ls~n~  211 (768)
T 3rgz_A          141 PGKVSGGLKLNSLEVLDLSANSISGA--NVVGWVLSDGCGELKHLAISGNKISGDVD------VSRC-VNLEFLDVSSNN  211 (768)
T ss_dssp             CSSCCSCCCCTTCSEEECCSSCCEEE--THHHHHHTTCCTTCCEEECCSSEEESCCB------CTTC-TTCCEEECCSSC
T ss_pred             cCCHHHhccCCCCCEEECCCCccCCc--CChhhhhhccCCCCCEEECCCCcccccCC------cccC-CcCCEEECcCCc
Confidence            22222234555555555555555543  1222   4455555555555555544333      1222 455555555555


Q ss_pred             CCCccchhhhcCCC--------------CCCCCCCCCCCcEEEccCCcCCcccchhhhcCCCCcEEEccCCccccccccc
Q 048351          264 LTASIYPWLFNVSS--------------IPDAPGPMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEH  329 (850)
Q Consensus       264 l~~~~~~~l~~l~~--------------ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~  329 (850)
                      +++.+|. +.+++.              +|..++.+++|++|++++|.+++.+|..  .+++|++|++++|.+++.+|..
T Consensus       212 l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~  288 (768)
T 3rgz_A          212 FSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDF  288 (768)
T ss_dssp             CCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCC
T ss_pred             CCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHH
Confidence            5443211 000000              1112334445555555555554444432  4455555555555555444443


Q ss_pred             ccc---cc-----ccccCCCCCChhccCCCCCCEEEccCCcCCCCCchhHhhcCcCCCEEecccCcCcccCChhhhhhcc
Q 048351          330 FFS---NF-----SYLKMGPHFPKWLQTQKHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFI  401 (850)
Q Consensus       330 ~~~---~l-----~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~  401 (850)
                      ++.   ++     +.|++.+.+|..++.+++|++|++++|.+++.+|......+++|++|++++|.+++.+|..+ ....
T Consensus       289 ~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l-~~l~  367 (768)
T 3rgz_A          289 LSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESL-TNLS  367 (768)
T ss_dssp             SCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTH-HHHT
T ss_pred             HHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHH-Hhhh
Confidence            321   11     34455556666666666666666666666666665522334566666666666666666665 2221


Q ss_pred             CCcCEEEccCCcCcccCCCC-----CCCCcEEEccCCcCcCccccccccCCCCccEEEccCCCCCCCCCcccccCCCCCE
Q 048351          402 LESPGIDISSNHLEGPSPSL-----PSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRI  476 (850)
Q Consensus       402 ~~L~~L~l~~N~l~~~~~~~-----~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  476 (850)
                      .+++.|++++|.+++.+|..     +++|++|++++|.+++.++.... .+++|++|++++|.+++.+|..+..+++|++
T Consensus       368 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  446 (768)
T 3rgz_A          368 ASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS-NCSELVSLHLSFNYLSGTIPSSLGSLSKLRD  446 (768)
T ss_dssp             TTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGG-GCTTCCEEECCSSEEESCCCGGGGGCTTCCE
T ss_pred             cCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHh-cCCCCCEEECcCCcccCcccHHHhcCCCCCE
Confidence            36666777777766655543     34577777777777766554332 4567777777777777777777777777777


Q ss_pred             EEcCCCcccccCCCccccccCccEEeccCCccccCCchhhcCCCCcCeeccccccceeecchhHHhcCCCCCEEEccCCc
Q 048351          477 LNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNR  556 (850)
Q Consensus       477 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~  556 (850)
                      |++++|.+++.+|..+..+++|++|++++|++++.+|..+.++++|++|++++|++++.+|.++. .+++|++|++++|+
T Consensus       447 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~L~~N~  525 (768)
T 3rgz_A          447 LKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG-RLENLAILKLSNNS  525 (768)
T ss_dssp             EECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG-GCTTCCEEECCSSC
T ss_pred             EECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHh-cCCCCCEEECCCCc
Confidence            77777777777777777777777777777777777777777777777777777777777777776 57777777777777


Q ss_pred             cccccCcCcCCCCCcceeecccccCcccCCccccCcccCccccccCcccc-------------------ccccccCCCcc
Q 048351          557 FYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAI-------------------TFSYAVPSRTT  617 (850)
Q Consensus       557 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~-------------------~~~~~~~~~~~  617 (850)
                      +++.+|..++.+++|++|++++|+++|.+|..+.....+..+........                   .+.+..+....
T Consensus       526 l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  605 (768)
T 3rgz_A          526 FSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLN  605 (768)
T ss_dssp             CEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGG
T ss_pred             ccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhh
Confidence            77777777777777777777777777777777666554433221110000                   00000010000


Q ss_pred             cCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCCCccccccCCCCee
Q 048351          618 MLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFL  697 (850)
Q Consensus       618 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L  697 (850)
                      .++.....++....+.|..+..+..++.|+.|||++|+++|.+|.+++++++|+.|+|++|+++|.+|..++++++|++|
T Consensus       606 ~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L  685 (768)
T 3rgz_A          606 RLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNIL  685 (768)
T ss_dssp             GGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEE
T ss_pred             ccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEE
Confidence            00000000000112345556667788999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCcCcccCcccccCCCCCCEEEcCCCcCcccCCCCCcCCCcCccccCCCCCCCCCCCCCCCCCCC
Q 048351          698 DLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGKIPTGTQLQSFNASVYDGNPELCGLPLPSKCWDEE  765 (850)
Q Consensus       698 ~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~lc~~~~~~~c~~~~  765 (850)
                      ||++|+++|.+|..++.+++|++||+|+|+++|.||.++++.+|...+|.|||++||.|+. .|....
T Consensus       686 dLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~-~C~~~~  752 (768)
T 3rgz_A          686 DLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RCDPSN  752 (768)
T ss_dssp             ECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC-CCCSCC
T ss_pred             ECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCc-CCCCCc
Confidence            9999999999999999999999999999999999999999999999999999999999987 886443

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=7.6e-65  Score=612.02  Aligned_cols=569  Identities=28%  Similarity=0.366  Sum_probs=417.7

Q ss_pred             CCCcccccc--cccCCCCCCEEeCCCCCCCCCCCCccc-CCCCCCCEEeCCCCCCCCCCCcc---cCCCCCCcEEEccCC
Q 048351          109 ASLRGTLNP--ALLKLHYLRHLDLSFNNFSGSQIPMFI-GSLSKLEYLDLFAASFSGPIPPL---LGNLSRLQYLSLGYN  182 (850)
Q Consensus       109 ~~l~g~l~~--~l~~l~~L~~L~Ls~n~l~~~~~p~~~-~~l~~L~~L~Ls~n~l~~~~p~~---l~~l~~L~~L~Ls~N  182 (850)
                      +.+.|.+|.  .++++++|++|||++|.+++. +|..+ +++++|++|+|++|.+++..|..   +.++++|++|++++|
T Consensus       110 n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n  188 (768)
T 3rgz_A          110 NSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFP-GKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGN  188 (768)
T ss_dssp             SEEEEEGGGGGGGGGCTTCCEEECCSSEEECC-SSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSS
T ss_pred             CcCCCcCCChHHHhCCCCCCEEECcCCccCCc-CCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCC
Confidence            445555665  666666666666666666654 45443 56666666666666666655554   556666666666666


Q ss_pred             CCCCCCCccccccCCCccEEeCCCCCCCCCcchhhhhcCCCCCcEEEccCCCCCCCCCccccccccCCCCcccEEEccCC
Q 048351          183 KLLRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYN  262 (850)
Q Consensus       183 ~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~N  262 (850)
                      ++....   .+..+++|++|++++|++++.  ++. ++.+++|++|++++|.+++..+    ..+..+ ++|++|++++|
T Consensus       189 ~l~~~~---~~~~l~~L~~L~Ls~n~l~~~--~~~-l~~l~~L~~L~Ls~n~l~~~~~----~~l~~l-~~L~~L~Ls~n  257 (768)
T 3rgz_A          189 KISGDV---DVSRCVNLEFLDVSSNNFSTG--IPF-LGDCSALQHLDISGNKLSGDFS----RAISTC-TELKLLNISSN  257 (768)
T ss_dssp             EEESCC---BCTTCTTCCEEECCSSCCCSC--CCB-CTTCCSCCEEECCSSCCCSCHH----HHTTTC-SSCCEEECCSS
T ss_pred             cccccC---CcccCCcCCEEECcCCcCCCC--Ccc-cccCCCCCEEECcCCcCCCccc----HHHhcC-CCCCEEECCCC
Confidence            542211   124555666666666665553  122 5556666666666666555444    334444 55666666666


Q ss_pred             CCCCccchhhhcCCCCCCCCCCCCCCcEEEccCCcCCcccchhhhcC-CCCcEEEccCCcccccccccc--ccc-----c
Q 048351          263 NLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIPKFFQNM-FKLEGLSLRGNSLEGVISEHF--FSN-----F  334 (850)
Q Consensus       263 ~l~~~~~~~l~~l~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~L~~N~l~~~~~~~~--~~~-----l  334 (850)
                      ++++.+|.          .  .+++|++|++++|++++.+|..+... ++|++|++++|.+++.+|..+  +.+     +
T Consensus       258 ~l~~~~~~----------~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L  325 (768)
T 3rgz_A          258 QFVGPIPP----------L--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLAL  325 (768)
T ss_dssp             CCEESCCC----------C--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEEC
T ss_pred             cccCccCc----------c--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEEC
Confidence            55544332          1  45666666666666666666655543 666666666666666555432  111     1


Q ss_pred             ccccCCCCCChh-ccCCCCCCEEEccCCcCCCCCchhHhhcCcCCCEEecccCcCcccCChhhhhhccCCcCEEEccCCc
Q 048351          335 SYLKMGPHFPKW-LQTQKHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNH  413 (850)
Q Consensus       335 ~~~~l~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~l~~N~  413 (850)
                      +.|++.|.+|.. +..+++|++|++++|.+++.+|..+....++|++|++++|.+++.+|..+......+++.|++++|.
T Consensus       326 ~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~  405 (768)
T 3rgz_A          326 SSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNG  405 (768)
T ss_dssp             CSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSE
T ss_pred             CCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCc
Confidence            444555566655 8899999999999999999999988877558999999999999988877633223789999999999


Q ss_pred             CcccCCCC---CCCCcEEEccCCcCcCccccccccCCCCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCCC
Q 048351          414 LEGPSPSL---PSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPN  490 (850)
Q Consensus       414 l~~~~~~~---~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~  490 (850)
                      +++.+|..   +++|++|++++|.+++.++.... .+++|++|++++|.+++.+|..+..+++|++|++++|++++.+|.
T Consensus       406 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~  484 (768)
T 3rgz_A          406 FTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLG-SLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPS  484 (768)
T ss_dssp             EEEECCGGGGGCTTCCEEECCSSEEESCCCGGGG-GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCG
T ss_pred             cccccCHHHhcCCCCCEEECcCCcccCcccHHHh-cCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCH
Confidence            99888864   67899999999999988776543 568999999999999999999999999999999999999999999


Q ss_pred             ccccccCccEEeccCCccccCCchhhcCCCCcCeeccccccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCC
Q 048351          491 SCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLAD  570 (850)
Q Consensus       491 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~  570 (850)
                      .+..+++|++|++++|++++.+|..+..+++|++|++++|+++|.+|..+. .+++|++|++++|+++|.+|..+.....
T Consensus       485 ~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~-~l~~L~~L~Ls~N~l~g~ip~~~~~~~~  563 (768)
T 3rgz_A          485 GLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELG-DCRSLIWLDLNTNLFNGTIPAAMFKQSG  563 (768)
T ss_dssp             GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGG-GCTTCCEEECCSSEEESBCCGGGGTTTT
T ss_pred             HHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHc-CCCCCCEEECCCCccCCcCChHHhcccc
Confidence            999999999999999999999999999999999999999999999999887 6999999999999999999887665443


Q ss_pred             cce----------------------------------------------eecccccCcccCCccccCcccCccccccCcc
Q 048351          571 IQI----------------------------------------------LDLSLNNISGNIPKCFNNFTAMTQERSYNSS  604 (850)
Q Consensus       571 L~~----------------------------------------------L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~  604 (850)
                      +..                                              ++++.|.++|.+|..+.+++.|+.++...+ 
T Consensus       564 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N-  642 (768)
T 3rgz_A          564 KIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYN-  642 (768)
T ss_dssp             CBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSS-
T ss_pred             hhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCC-
Confidence            332                                              334445666666666666666654433222 


Q ss_pred             ccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCC
Q 048351          605 AITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYI  684 (850)
Q Consensus       605 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~i  684 (850)
                                                .+.|..+..++.++.|+.|+|++|+++|.+|..++++++|+.|||++|+++|.+
T Consensus       643 --------------------------~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~i  696 (768)
T 3rgz_A          643 --------------------------MLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI  696 (768)
T ss_dssp             --------------------------CCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECC
T ss_pred             --------------------------cccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcC
Confidence                                      134555566677888899999999999999999999999999999999999999


Q ss_pred             CccccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCCc-Cccc
Q 048351          685 TPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNN-LSGK  731 (850)
Q Consensus       685 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~-l~g~  731 (850)
                      |..++++++|++||+++|+++|.||.. ..+..+....+.+|+ ++|.
T Consensus       697 p~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~Lcg~  743 (768)
T 3rgz_A          697 PQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGLCGY  743 (768)
T ss_dssp             CGGGGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGGGGCSCTEEEST
T ss_pred             ChHHhCCCCCCEEECcCCcccccCCCc-hhhccCCHHHhcCCchhcCC
Confidence            999999999999999999999999975 334445555667775 6653

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=1.6e-57  Score=543.47  Aligned_cols=575  Identities=20%  Similarity=0.148  Sum_probs=390.1

Q ss_pred             CCCCEEeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCCccccccCCCccEE
Q 048351          123 HYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAGNLDWISQLFSLRYL  202 (850)
Q Consensus       123 ~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L  202 (850)
                      +++++|+|++|.+++. .+..++++++|++|+|++|.+++..|..|+++++|++|++++|++. ..+...++++++|++|
T Consensus        25 ~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L  102 (680)
T 1ziw_A           25 TNITVLNLTHNQLRRL-PAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS-QLSDKTFAFCTNLTEL  102 (680)
T ss_dssp             TTCSEEECCSSCCCCC-CGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEE
T ss_pred             CCCcEEECCCCCCCCc-CHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccC-ccChhhhccCCCCCEE
Confidence            5777777777777764 4456777777777777777777777777777777777777777753 2223347777777777


Q ss_pred             eCCCCCCCCCcchhhhhcCCCCCcEEEccCCCCCCCCCccccccccCCCCcccEEEccCCCCCCccchhhhcCCCCCCCC
Q 048351          203 DLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAP  282 (850)
Q Consensus       203 ~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~ip~~l  282 (850)
                      ++++|++++.+  +..++++++|++|++++|.+++.++    ..+.++ ++|++|++++|++++..+..+.        +
T Consensus       103 ~L~~n~l~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l-~~L~~L~L~~n~l~~~~~~~~~--------~  167 (680)
T 1ziw_A          103 HLMSNSIQKIK--NNPFVKQKNLITLDLSHNGLSSTKL----GTQVQL-ENLQELLLSNNKIQALKSEELD--------I  167 (680)
T ss_dssp             ECCSSCCCCCC--SCTTTTCTTCCEEECCSSCCSCCCC----CSSSCC-TTCCEEECCSSCCCCBCHHHHG--------G
T ss_pred             ECCCCccCccC--hhHccccCCCCEEECCCCcccccCc----hhhccc-ccCCEEEccCCcccccCHHHhh--------c
Confidence            77777777652  2567777777777777777776655    344454 7777777777777765444321        1


Q ss_pred             CCCCCCcEEEccCCcCCcccchhhhcCCCCcEEEccCCccccccccccccccccccCCCCCChhccCCCCCCEEEccCCc
Q 048351          283 GPMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAG  362 (850)
Q Consensus       283 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~  362 (850)
                      ..+++|++|++++|++++..|..+..+++|+.|+++++.+.+.....             ++..+ ..++|+.|++++|.
T Consensus       168 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~-------------~~~~l-~~~~L~~L~L~~n~  233 (680)
T 1ziw_A          168 FANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEK-------------LCLEL-ANTSIRNLSLSNSQ  233 (680)
T ss_dssp             GTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHH-------------HHHHH-TTSCCCEEECTTSC
T ss_pred             cccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHH-------------HHHHh-hhccccEEEccCCc
Confidence            23467777777777777777777777777777777777765432221             11111 23667777777777


Q ss_pred             CCCCCchhHhhcC-cCCCEEecccCcCcccCChhhhhhccCCcCEEEccCCcCcccCCCC---CCCCcEEEccCCcCcCc
Q 048351          363 ISDSIPDWFSDTS-HKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSL---PSNAFYIDLSKNKFSGP  438 (850)
Q Consensus       363 l~~~~~~~~~~~~-~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~l~~N~l~~~~~~~---~~~L~~L~Ls~n~l~~~  438 (850)
                      +++..|.++.... ++|++|++++|.+++..|..+ ... ++++.|++++|.+++..|..   +++|++|++++|...+.
T Consensus       234 l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~-~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~  311 (680)
T 1ziw_A          234 LSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSF-AWL-PQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQS  311 (680)
T ss_dssp             CCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTT-TTC-TTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC-
T ss_pred             ccccChhHhhccCcCCCCEEECCCCCcCccCcccc-cCc-ccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcc
Confidence            7766666665432 237777777777776666665 333 66777777777777666543   55677777776655432


Q ss_pred             c-----cc---ccccCCCCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCccccc--CCCccccc--cCccEEeccCC
Q 048351          439 I-----SF---LCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGK--IPNSCGYL--QKMLTLSLHHN  506 (850)
Q Consensus       439 ~-----~~---~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~--~p~~~~~l--~~L~~L~Ls~N  506 (850)
                      +     +.   .....+++|++|++++|.+++..+..|.++++|++|++++|.+.+.  .+..|..+  ++|+.|++++|
T Consensus       312 ~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n  391 (680)
T 1ziw_A          312 ISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKN  391 (680)
T ss_dssp             -----CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTS
T ss_pred             cccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCC
Confidence            2     11   1222456777777777777777777777777777777777764322  22233332  46777777777


Q ss_pred             ccccCCchhhcCCCCcCeeccccccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccCc--cc
Q 048351          507 NFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNIS--GN  584 (850)
Q Consensus       507 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~--~~  584 (850)
                      ++++..|..|..+++|+.|++++|++++.+|...+.++++|++|++++|++++..+..+..+++|+.|++++|.++  +.
T Consensus       392 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  471 (680)
T 1ziw_A          392 KISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDS  471 (680)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTC
T ss_pred             CCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhcccccccccc
Confidence            7777777777777777777777777776666544446777777777777777777777777777777777777775  45


Q ss_pred             CCccccCcccCccccccCccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCCh---
Q 048351          585 IPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVP---  661 (850)
Q Consensus       585 ~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p---  661 (850)
                      +|..+.++++|+.+....+.                           +.+.....+..++.|++|+|++|++++..+   
T Consensus       472 ~p~~~~~l~~L~~L~Ls~N~---------------------------l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  524 (680)
T 1ziw_A          472 SPSPFQPLRNLTILDLSNNN---------------------------IANINDDMLEGLEKLEILDLQHNNLARLWKHAN  524 (680)
T ss_dssp             SSCTTTTCTTCCEEECCSSC---------------------------CCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTS
T ss_pred             CCcccccCCCCCEEECCCCC---------------------------CCcCChhhhccccccCEEeCCCCCccccchhhc
Confidence            66777777777665443321                           112222334556677889999998875422   


Q ss_pred             -----hhhhccccCCeEecCCCcCccCCCccccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCCcCcccCCCCC
Q 048351          662 -----EEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGKIPTGT  736 (850)
Q Consensus       662 -----~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~  736 (850)
                           ..+.++++|+.|+|++|+++...+..|+++++|+.|||++|++++..+..|..+++|++|++++|++++..|...
T Consensus       525 ~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  604 (680)
T 1ziw_A          525 PGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVF  604 (680)
T ss_dssp             TTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHH
T ss_pred             cCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHh
Confidence                 237788899999999999986555578889999999999999998777778888999999999999987655422


Q ss_pred             --cCCCcCccccCCCCCCCCCCC
Q 048351          737 --QLQSFNASVYDGNPELCGLPL  757 (850)
Q Consensus       737 --~~~~~~~~~~~gN~~lc~~~~  757 (850)
                        .+..+....+.|||+.|+|+.
T Consensus       605 ~~~~~~L~~l~l~~N~~~c~c~~  627 (680)
T 1ziw_A          605 GPAFRNLTELDMRFNPFDCTCES  627 (680)
T ss_dssp             HHHHTTCSEEECTTCCCCBCCCC
T ss_pred             cccccccCEEEccCCCcccCCcc
Confidence              356666777889999998874

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=1.3e-56  Score=535.54  Aligned_cols=568  Identities=20%  Similarity=0.196  Sum_probs=349.8

Q ss_pred             CCCcccccccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCcccCCCCCCcEEEccCCCCCCCC
Q 048351          109 ASLRGTLNPALLKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAG  188 (850)
Q Consensus       109 ~~l~g~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~  188 (850)
                      +.+++..+.+|.++++|++|+|++|.+++. .|..++++++|++|+|++|.+++..+.+|+++++|++|++++|++. ..
T Consensus        35 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~-~~  112 (680)
T 1ziw_A           35 NQLRRLPAANFTRYSQLTSLDVGFNTISKL-EPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQ-KI  112 (680)
T ss_dssp             SCCCCCCGGGGGGGTTCSEEECCSSCCCCC-CTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CC
T ss_pred             CCCCCcCHHHHhCCCcCcEEECCCCccCcc-CHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccC-cc
Confidence            567776677899999999999999999986 7888999999999999999999766668999999999999999863 33


Q ss_pred             CccccccCCCccEEeCCCCCCCCCcchhhhhcCCCCCcEEEccCCCCCCCCCccccccccCCCCcccEEEccCCCCCCcc
Q 048351          189 NLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASI  268 (850)
Q Consensus       189 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~  268 (850)
                      .+..++++++|++|++++|.+++.  .+..+.++++|++|++++|.+++.++..  ...... ++|++|++++|++++..
T Consensus       113 ~~~~~~~l~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~~~~-~~L~~L~L~~n~l~~~~  187 (680)
T 1ziw_A          113 KNNPFVKQKNLITLDLSHNGLSST--KLGTQVQLENLQELLLSNNKIQALKSEE--LDIFAN-SSLKKLELSSNQIKEFS  187 (680)
T ss_dssp             CSCTTTTCTTCCEEECCSSCCSCC--CCCSSSCCTTCCEEECCSSCCCCBCHHH--HGGGTT-CEESEEECTTCCCCCBC
T ss_pred             ChhHccccCCCCEEECCCCccccc--CchhhcccccCCEEEccCCcccccCHHH--hhcccc-ccccEEECCCCcccccC
Confidence            445689999999999999999886  4567889999999999999998876511  112344 89999999999999875


Q ss_pred             chhhhcCCCCCCCCCCCCCCcEEEccCCcCCcccchhhh---cCCCCcEEEccCCccccccccccccccccccCCCCCCh
Q 048351          269 YPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIPKFFQ---NMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPK  345 (850)
Q Consensus       269 ~~~l~~l~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~---~l~~L~~L~L~~N~l~~~~~~~~~~~l~~~~l~~~~p~  345 (850)
                      |..          +..+++|+.|++++|.+.+.....+.   ..++|+.|++++|.+++..+..                
T Consensus       188 ~~~----------~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~----------------  241 (680)
T 1ziw_A          188 PGC----------FHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTT----------------  241 (680)
T ss_dssp             TTG----------GGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTT----------------
T ss_pred             hhh----------hhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhH----------------
Confidence            544          44455555555555554432222111   2345555555555555443322                


Q ss_pred             hccCCC--CCCEEEccCCcCCCCCchhHhhcCcCCCEEecccCcCcccCChhhhhhccCCcCEEEccCCcCccc-----C
Q 048351          346 WLQTQK--HFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGP-----S  418 (850)
Q Consensus       346 ~l~~l~--~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~l~~N~l~~~-----~  418 (850)
                       +..++  +|+.|++++|.+++..+..+... ++|++|++++|.+++..|..+ ... .+++.|++++|...+.     +
T Consensus       242 -~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~-~~l-~~L~~L~L~~~~~~~~~~~~~l  317 (680)
T 1ziw_A          242 -FLGLKWTNLTMLDLSYNNLNVVGNDSFAWL-PQLEYFFLEYNNIQHLFSHSL-HGL-FNVRYLNLKRSFTKQSISLASL  317 (680)
T ss_dssp             -TGGGGGSCCCEEECTTSCCCEECTTTTTTC-TTCCEEECCSCCBSEECTTTT-TTC-TTCCEEECTTCBCCC------C
T ss_pred             -hhccCcCCCCEEECCCCCcCccCcccccCc-ccccEeeCCCCccCccChhhh-cCC-CCccEEeccchhhhcccccccc
Confidence             22222  24555555555444444433322 345555555555444444444 222 4444455444433221     1


Q ss_pred             C-------CCCCCCcEEEccCCcCcCccccccccCCCCccEEEccCCCCCCC--CCcccccC--CCCCEEEcCCCccccc
Q 048351          419 P-------SLPSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGK--LPDCWLQF--NMLRILNLANNNFSGK  487 (850)
Q Consensus       419 ~-------~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~--~p~~~~~l--~~L~~L~Ls~N~l~~~  487 (850)
                      |       ..+++|++|++++|.+++..+.... .+++|++|++++|.+...  .+..|..+  ++|+.|++++|++++.
T Consensus       318 p~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~  396 (680)
T 1ziw_A          318 PKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFT-GLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKI  396 (680)
T ss_dssp             CEECTTTTTTCTTCCEEECCSCCBCCCCTTTTT-TCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEE
T ss_pred             cccChhhcccCCCCCEEECCCCccCCCChhHhc-cccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeE
Confidence            1       1134445555555554443332211 334455555555443211  11122221  3455555555555544


Q ss_pred             CCCccccccCccEEeccCCccccCCc-hhhcCCCCcCeeccccccceeecchhHHhcCCCCCEEEccCCccc--cccCcC
Q 048351          488 IPNSCGYLQKMLTLSLHHNNFSGELP-SLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFY--GKIPFQ  564 (850)
Q Consensus       488 ~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~--~~~p~~  564 (850)
                      .|..+..+++|+.|++++|.+++.+| ..+.++++|++|++++|++++..+..+. .+++|++|++++|.+.  +.+|..
T Consensus       397 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~p~~  475 (680)
T 1ziw_A          397 ESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFA-LVPSLQRLMLRRVALKNVDSSPSP  475 (680)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTT-TCTTCCEEECTTSCCBCTTCSSCT
T ss_pred             ChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhh-cCcccccchhccccccccccCCcc
Confidence            44445555555555555555544333 3444455555555555554422222222 3455555555555443  334444


Q ss_pred             cCCCCCcceeecccccCcccCCccccCcccCccccccCccccccccccCCCcccCccceEeeEEEEEecCcccccccccc
Q 048351          565 LCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLG  644 (850)
Q Consensus       565 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  644 (850)
                      +..+++|++|++++|++++..|..+.++++|+.+....+....+....                   ..+.....+..++
T Consensus       476 ~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-------------------~~~~~~~~~~~l~  536 (680)
T 1ziw_A          476 FQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHA-------------------NPGGPIYFLKGLS  536 (680)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTT-------------------STTSCCCTTTTCT
T ss_pred             cccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhh-------------------ccCCcchhhcCCC
Confidence            455555555555555555444444444444444433222110000000                   0011122345677


Q ss_pred             cccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCCCccccccCCCCeeeCCCCcCcccCccccc-CCCCCCEEEc
Q 048351          645 LVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLS-QVNRLSVMDL  723 (850)
Q Consensus       645 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~l  723 (850)
                      .|+.|+|++|+++...+..|.++++|+.|+|++|++++..+..|.++++|+.|+|++|++++..|..+. .+++|+++++
T Consensus       537 ~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l  616 (680)
T 1ziw_A          537 HLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDM  616 (680)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEEC
T ss_pred             CCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEc
Confidence            889999999999966566799999999999999999988778889999999999999999999998887 7899999999


Q ss_pred             CCCcCcccCCC
Q 048351          724 SHNNLSGKIPT  734 (850)
Q Consensus       724 s~N~l~g~iP~  734 (850)
                      ++|++.+..+.
T Consensus       617 ~~N~~~c~c~~  627 (680)
T 1ziw_A          617 RFNPFDCTCES  627 (680)
T ss_dssp             TTCCCCBCCCC
T ss_pred             cCCCcccCCcc
Confidence            99999988764

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=1.2e-55  Score=537.47  Aligned_cols=571  Identities=22%  Similarity=0.217  Sum_probs=298.6

Q ss_pred             EeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCCccccccCCCccEEeCCCC
Q 048351          128 LDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAGNLDWISQLFSLRYLDLSSC  207 (850)
Q Consensus       128 L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~n  207 (850)
                      .|.++++++  .+|.   -.++|++|||++|.+++..|..|.++++|++|+|++|.......+..|.++++|++|+|++|
T Consensus         9 ~dcs~~~L~--~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N   83 (844)
T 3j0a_A            9 AFYRFCNLT--QVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS   83 (844)
T ss_dssp             EEESCCCSS--CCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC
T ss_pred             EEccCCCCC--CCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC
Confidence            444555555  2444   23455555555555555555555555555555555554322222334555555556666555


Q ss_pred             CCCCCcchhhhhcCCCCCcEEEccCCCCCCCCCccccccccCCCCcccEEEccCCCCCCccchhhhcCCCCCCCCCCCCC
Q 048351          208 NLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMIS  287 (850)
Q Consensus       208 ~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~ip~~l~~l~~  287 (850)
                      .+++.  .+..+.++++|++|+|++|.+++..+..  ..+.++ ++|++|+|++|.+++..+         +..++++++
T Consensus        84 ~l~~~--~p~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~~~~L-~~L~~L~Ls~N~l~~~~~---------~~~~~~L~~  149 (844)
T 3j0a_A           84 KIYFL--HPDAFQGLFHLFELRLYFCGLSDAVLKD--GYFRNL-KALTRLDLSKNQIRSLYL---------HPSFGKLNS  149 (844)
T ss_dssp             CCCEE--CTTSSCSCSSCCCEECTTCCCSSCCSTT--CCCSSC-SSCCEEEEESCCCCCCCC---------CGGGGTCSS
T ss_pred             cCccc--CHhHccCCcccCEeeCcCCCCCcccccC--cccccc-CCCCEEECCCCccccccc---------chhHhhCCC
Confidence            55553  2455556666666666666665533210  113333 666666666666655321         123556666


Q ss_pred             CcEEEccCCcCCcccchhhhcC--CCCcEEEccCCccccccccccccccccccCCCCCChhccCCCCCCEEEccCCcCCC
Q 048351          288 LRTLTLSDNELDGEIPKFFQNM--FKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAGISD  365 (850)
Q Consensus       288 L~~L~Ls~N~l~~~~p~~l~~l--~~L~~L~L~~N~l~~~~~~~~~~~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~  365 (850)
                      |++|++++|.+++..+..+..+  ++|+.|++++|.+.+..+..+ .         ..+..+.+ ..|+.|++++|.+++
T Consensus       150 L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~-~---------~~~~~~~~-~~L~~L~Ls~n~l~~  218 (844)
T 3j0a_A          150 LKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDW-G---------KCMNPFRN-MVLEILDVSGNGWTV  218 (844)
T ss_dssp             CCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCC-C---------SSSCTTTT-CCBSEEBCSSCCSST
T ss_pred             CCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccch-h---------hcCCcccc-CceeEEecCCCcCch
Confidence            6666666666666666666655  666666666666655443320 0         00001111 136666666666666


Q ss_pred             CCchhHhhcC--cCCCEEecccC---------cCcccCChhhhhhccCCcCEEEccCCcCcccCCCC---CCCCcEEEcc
Q 048351          366 SIPDWFSDTS--HKLADLNFSHN---------QMTGRFPNYISSMFILESPGIDISSNHLEGPSPSL---PSNAFYIDLS  431 (850)
Q Consensus       366 ~~~~~~~~~~--~~L~~L~Ls~N---------~l~~~~p~~~~~~~~~~L~~L~l~~N~l~~~~~~~---~~~L~~L~Ls  431 (850)
                      ..+..+....  ..++.+.++++         .+.+..+..+.+....+++.|++++|.+++..+..   +++|+.|+++
T Consensus       219 ~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  298 (844)
T 3j0a_A          219 DITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLA  298 (844)
T ss_dssp             TTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEE
T ss_pred             hHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECC
Confidence            6555554332  23555555422         22222233332332356666777777666655543   4566677777


Q ss_pred             CCcCcCccccccccCCCCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCCCccccccCccEEeccCCccccC
Q 048351          432 KNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGE  511 (850)
Q Consensus       432 ~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  511 (850)
                      +|.+++..+.... .+++|++|++++|.+++..|..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+++ 
T Consensus       299 ~n~i~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-  376 (844)
T 3j0a_A          299 YNKINKIADEAFY-GLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT-  376 (844)
T ss_dssp             SCCCCEECTTTTT-TCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC-
T ss_pred             CCcCCCCChHHhc-CCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc-
Confidence            7766655443222 44667777777777766666677777777777777777766666666777777777777777663 


Q ss_pred             CchhhcCCCCcCeeccccccceeecchhHHhcCCCCCEEEccCCccccccC-cCcCCCCCcceeecccccCcccCCc-cc
Q 048351          512 LPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIP-FQLCHLADIQILDLSLNNISGNIPK-CF  589 (850)
Q Consensus       512 ~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~-~~  589 (850)
                      ++    .+++|+.|++++|+++ .+|..    ..+++.|++++|++++... ..+..+++|+.|++++|++++..+. .+
T Consensus       377 i~----~~~~L~~L~l~~N~l~-~l~~~----~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  447 (844)
T 3j0a_A          377 IH----FIPSIPDIFLSGNKLV-TLPKI----NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTP  447 (844)
T ss_dssp             CS----SCCSCSEEEEESCCCC-CCCCC----CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSS
T ss_pred             cc----CCCCcchhccCCCCcc-ccccc----ccccceeecccCccccCchhhhhhcCCccceeeCCCCccccccccccc
Confidence            22    2566777777777776 55542    3466777777777664321 1244666777777777777654332 12


Q ss_pred             cCcccCccccccCccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhcccc
Q 048351          590 NNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVG  669 (850)
Q Consensus       590 ~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~  669 (850)
                      ..+++|+.+....+......                      ..+.....+..++.|+.|+|++|++++.+|..|.++++
T Consensus       448 ~~~~~L~~L~Ls~N~l~~~~----------------------~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  505 (844)
T 3j0a_A          448 SENPSLEQLFLGENMLQLAW----------------------ETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTA  505 (844)
T ss_dssp             CSCTTCCBCEEESCCCSSSC----------------------CSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCS
T ss_pred             ccCCccccccCCCCcccccc----------------------ccccchhhhcCcccccEEECCCCcccccChhHccchhh
Confidence            22333322111110000000                      00011111223344455555555555555555555555


Q ss_pred             CCeEecCCCcCccCCCccccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCCcCcccCCCCCcCCCcCccccCCC
Q 048351          670 LIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGKIPTGTQLQSFNASVYDGN  749 (850)
Q Consensus       670 L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN  749 (850)
                      |+.|+|++|++++.+|..+.  ++|+.|||++|++++.+|..|.   +|+++++++|++.|..+    +..|......+|
T Consensus       506 L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~---~L~~l~l~~Np~~C~c~----~~~f~~~~~~~~  576 (844)
T 3j0a_A          506 LRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFV---SLSVLDITHNKFICECE----LSTFINWLNHTN  576 (844)
T ss_dssp             CSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCS---SCCEEEEEEECCCCSSS----CCSHHHHHHHTT
T ss_pred             hheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHhC---CcCEEEecCCCcccccc----cHHHHHHHHhcC
Confidence            55555555555544444443  4555555555555555554432   34555555555554433    222222223344


Q ss_pred             CCCCCCCCCCCCCCCCCCCCC
Q 048351          750 PELCGLPLPSKCWDEESAPGP  770 (850)
Q Consensus       750 ~~lc~~~~~~~c~~~~~~~~~  770 (850)
                      ..+||.+....|..|....+.
T Consensus       577 ~~~~~~~~~~~C~~p~~~~g~  597 (844)
T 3j0a_A          577 VTIAGPPADIYCVYPDSFSGV  597 (844)
T ss_dssp             TTTCCCGGGCCCSSCSSSCSC
T ss_pred             cccccccccCccCCchhhCCC
Confidence            444555555678777665554

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=2.4e-53  Score=500.51  Aligned_cols=523  Identities=20%  Similarity=0.189  Sum_probs=362.7

Q ss_pred             cccccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCCcccc
Q 048351          114 TLNPALLKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAGNLDWI  193 (850)
Q Consensus       114 ~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~l  193 (850)
                      .+|..+.  +++++|||++|.+++. .|..++++++|++|+|++|.+++..|.+|+++++|++|++++|++. ...+..+
T Consensus        26 ~iP~~l~--~~l~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~  101 (606)
T 3t6q_A           26 EIPGTLP--NSTECLEFSFNVLPTI-QNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLI-FMAETAL  101 (606)
T ss_dssp             SCCTTSC--TTCCEEECTTCCCSEE-CTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCS-EECTTTT
T ss_pred             cCcCCCC--CcCcEEEccCCccCcC-ChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCccc-ccChhhh
Confidence            4555554  3789999999999875 6778899999999999999999888889999999999999999863 3334568


Q ss_pred             ccCCCccEEeCCCCCCCCCcchhhhhcCCCCCcEEEccCCCCCCCCCccccccccCCCCcccEEEccCCCCCCccchhhh
Q 048351          194 SQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLF  273 (850)
Q Consensus       194 ~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~  273 (850)
                      +++++|++|++++|.+++..  +..+..+++|++|++++|.+++...    ..+..+ ++|++|++++|++++..+..  
T Consensus       102 ~~l~~L~~L~L~~n~i~~l~--~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l-~~L~~L~L~~n~l~~~~~~~--  172 (606)
T 3t6q_A          102 SGPKALKHLFFIQTGISSID--FIPLHNQKTLESLYLGSNHISSIKL----PKGFPT-EKLKVLDFQNNAIHYLSKED--  172 (606)
T ss_dssp             SSCTTCCEEECTTSCCSCGG--GSCCTTCTTCCEEECCSSCCCCCCC----CTTCCC-TTCCEEECCSSCCCEECHHH--
T ss_pred             cccccccEeeccccCcccCC--cchhccCCcccEEECCCCcccccCc----ccccCC-cccCEEEcccCcccccChhh--
Confidence            88889999999999888752  3557888888888888888877543    233444 78888888888887654443  


Q ss_pred             cCCCCCCCCCCCCCCc--EEEccCCcCCcccchhhhcCCCCcEEEccCCccccccccccccccccccCCCCCChhccCCC
Q 048351          274 NVSSIPDAPGPMISLR--TLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQK  351 (850)
Q Consensus       274 ~l~~ip~~l~~l~~L~--~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~~~l~~~~p~~l~~l~  351 (850)
                              ++.+++|+  .|++++|.+++..|..+.. .+|+.|++++|....                    ..+..+.
T Consensus       173 --------~~~l~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~~~~--------------------~~~~~l~  223 (606)
T 3t6q_A          173 --------MSSLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQNLL--------------------VIFKGLK  223 (606)
T ss_dssp             --------HHTTTTCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCSCHH--------------------HHHHHTT
T ss_pred             --------hhhhcccceeEEecCCCccCccChhHhhh-ccccccccCCchhHH--------------------HHhhhcc
Confidence                    44556677  7888888888766665543 578888888776211                    1122233


Q ss_pred             CCCEEEccCCcCC-----CCCchhHhhcC-cCCCEEecccCcCcccCChhhhhhccCCcCEEEccCCcCcccCCCC--CC
Q 048351          352 HFSVLDISSAGIS-----DSIPDWFSDTS-HKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSL--PS  423 (850)
Q Consensus       352 ~L~~L~Ls~n~l~-----~~~~~~~~~~~-~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~l~~N~l~~~~~~~--~~  423 (850)
                      +++...+....+.     ...+..+.... .+++.|++++|.+++..+..+ ... ++++.|++++|.++..++..  ++
T Consensus       224 ~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~-~~l-~~L~~L~l~~n~l~~lp~~l~~l~  301 (606)
T 3t6q_A          224 NSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTF-HCF-SGLQELDLTATHLSELPSGLVGLS  301 (606)
T ss_dssp             TCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTT-TTC-TTCSEEECTTSCCSCCCSSCCSCT
T ss_pred             ccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHh-ccc-cCCCEEeccCCccCCCChhhcccc
Confidence            3322222221111     11111121111 157777777777776666655 333 67777777777776433222  45


Q ss_pred             CCcEEEccCCcCcCccccccccCCCCccEEEccCCCCCCCCCc-ccccCCCCCEEEcCCCcccccC--CCccccccCccE
Q 048351          424 NAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPD-CWLQFNMLRILNLANNNFSGKI--PNSCGYLQKMLT  500 (850)
Q Consensus       424 ~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~--p~~~~~l~~L~~  500 (850)
                      +|++|++++|.+++..+.... .+++|++|++++|.+.+.+|. .+..+++|++|++++|.+++..  +..+..+++|++
T Consensus       302 ~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~  380 (606)
T 3t6q_A          302 TLKKLVLSANKFENLCQISAS-NFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQS  380 (606)
T ss_dssp             TCCEEECTTCCCSBGGGGCGG-GCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCE
T ss_pred             cCCEEECccCCcCcCchhhhh-ccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCE
Confidence            677777777777665443222 446777777777777655544 4677777777777777777654  666777777777


Q ss_pred             EeccCCccccCCchhhcCCCCcCeeccccccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeeccccc
Q 048351          501 LSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNN  580 (850)
Q Consensus       501 L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~  580 (850)
                      |++++|++.+..|..+..+++|++|++++|++++..|...+..+++|++|++++|.+++..|..+..+++|++|++++|+
T Consensus       381 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~  460 (606)
T 3t6q_A          381 LNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNH  460 (606)
T ss_dssp             EECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCB
T ss_pred             EECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCC
Confidence            77777777776677777777777777777777755555433467777777777777777777777777777777777777


Q ss_pred             CcccC-C--ccccCcccCccccccCccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCC
Q 048351          581 ISGNI-P--KCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLG  657 (850)
Q Consensus       581 l~~~~-p--~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~  657 (850)
                      +++.. |  ..+.                                                   .++.|+.|++++|+++
T Consensus       461 l~~~~~~~~~~~~---------------------------------------------------~l~~L~~L~Ls~n~l~  489 (606)
T 3t6q_A          461 FPKGNIQKTNSLQ---------------------------------------------------TLGRLEILVLSFCDLS  489 (606)
T ss_dssp             CGGGEECSSCGGG---------------------------------------------------GCTTCCEEECTTSCCC
T ss_pred             CCccccccchhhc---------------------------------------------------cCCCccEEECCCCccC
Confidence            76521 1  2222                                                   3334478888888888


Q ss_pred             CCChhhhhccccCCeEecCCCcCccCCCccccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCCcCcccCC
Q 048351          658 GEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGKIP  733 (850)
Q Consensus       658 ~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP  733 (850)
                      +..|..|+.+++|+.|+|++|++++.+|..+.+++.| .||+++|++++.+|..+..+++|++|++++|+++|..+
T Consensus       490 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  564 (606)
T 3t6q_A          490 SIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS  564 (606)
T ss_dssp             EECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred             ccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence            8888888888888888888888888888888888888 88888888888888888888888888888888887655

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=3.3e-55  Score=515.93  Aligned_cols=517  Identities=17%  Similarity=0.210  Sum_probs=320.3

Q ss_pred             CCcHHHHHHHHHhhhcCCCCC--------CCCCCCCCCCCCCCCccc---cceEecCCCCCEEEEEcCCCCCcccchhhh
Q 048351           34 RCIEEERKALLKFKQGLVDEF--------GFLSSWGSEGEKKDCCNW---RGVRCSNQTGHVKVLDLHGTGRVKVLDIQT  102 (850)
Q Consensus        34 ~~~~~~~~~Ll~~k~~~~~~~--------~~l~~W~~~~~~~~~c~w---~gv~C~~~~~~v~~l~L~~~~~l~~l~l~~  102 (850)
                      +....|+.||.++|+++.++.        ....+|.   .+++||.|   .||+|+.. +||++++|++           
T Consensus        26 ~~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~---~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~-----------   90 (636)
T 4eco_A           26 AEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWN---FNKELDMWGAQPGVSLNSN-GRVTGLSLEG-----------   90 (636)
T ss_dssp             CHHHHHHHHHHHHHHHTTGGGCCCCC------CCCC---CSSCGGGTTCCTTEEECTT-CCEEEEECTT-----------
T ss_pred             hhHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCC---CCCCcccccCCCCeEEcCC-CCEEEEEecC-----------
Confidence            345689999999999986442        1234787   56899999   99999864 8999999998           


Q ss_pred             hccCCCCCCcccccccccCCCCCCEEeCCCCCCCCC-----------CCCcccCCCCCCCEEeCCCCCCCCCCCcccCC-
Q 048351          103 RVMSGNASLRGTLNPALLKLHYLRHLDLSFNNFSGS-----------QIPMFIGSLSKLEYLDLFAASFSGPIPPLLGN-  170 (850)
Q Consensus       103 ~~~~~~~~l~g~l~~~l~~l~~L~~L~Ls~n~l~~~-----------~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~-  170 (850)
                            ++++|.+|++++++++|++|||++|.+...           .+|...  +..|+ +++++|.+.+.+|..+.. 
T Consensus        91 ------~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~  161 (636)
T 4eco_A           91 ------FGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDL  161 (636)
T ss_dssp             ------SCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCHH
T ss_pred             ------cccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhhHHHH
Confidence                  589999999999999999999999976211           133332  44566 677777777766665542 


Q ss_pred             CCCCcEEEccCCCCCCCCCccccccCCCccEEeCC--CCCCCCCcchhhhhcCCCCCcEEEccCCCCCCC-CCccccccc
Q 048351          171 LSRLQYLSLGYNKLLRAGNLDWISQLFSLRYLDLS--SCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQ-PTIHRSFSH  247 (850)
Q Consensus       171 l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls--~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~~~  247 (850)
                      +.++..+++....+..       .....++.+.+.  .|++++   +|..++++++|++|+|++|.+++. .+.    . 
T Consensus       162 ~~~l~~~~l~~~~~~~-------~~~~~l~~l~l~~~~n~l~~---ip~~l~~l~~L~~L~Ls~n~l~~~~~~~----~-  226 (636)
T 4eco_A          162 IKDCINSDPQQKSIKK-------SSRITLKDTQIGQLSNNITF---VSKAVMRLTKLRQFYMGNSPFVAENICE----A-  226 (636)
T ss_dssp             HHHHHHHCTTSCCCCC-------CCCCCCCTTTTTCCSCEEEE---ECGGGGGCTTCCEEEEESCCCCGGGBSS----S-
T ss_pred             HHHHhhcCcccccccc-------ccccchhhhhhccccCCCcc---CCHHHhcccCCCEEECcCCccccccccc----c-
Confidence            2223333332221100       011112222222  344444   344555666666666666665552 000    0 


Q ss_pred             cCCCCcccEEEccCCCCCCccchhhhc-CCCCCCCCC--CCCCCcEEEccCCcCCcccchhhhcCCCCcEEEccCCc-cc
Q 048351          248 LNSSPSLETLGLSYNNLTASIYPWLFN-VSSIPDAPG--PMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNS-LE  323 (850)
Q Consensus       248 ~~~~~~L~~L~Ls~N~l~~~~~~~l~~-l~~ip~~l~--~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~-l~  323 (850)
                                         .+|..... ...+|+.++  ++++|++|++++|++.+.+|..++++++|++|++++|+ ++
T Consensus       227 -------------------~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~  287 (636)
T 4eco_A          227 -------------------WENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGIS  287 (636)
T ss_dssp             -------------------CSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSC
T ss_pred             -------------------ccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCc
Confidence                               00000000 000344444  55555555555555555555555555555555555555 55


Q ss_pred             c-ccccccccccccccCCCCCChhccCCCCCCEEEccCCcCCCCCch--hHhhcCcCCCEEecccCcCcccCChhhhhhc
Q 048351          324 G-VISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAGISDSIPD--WFSDTSHKLADLNFSHNQMTGRFPNYISSMF  400 (850)
Q Consensus       324 ~-~~~~~~~~~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~--~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~  400 (850)
                      + .+|..+ ..+          ..+..+++|++|++++|.++ .+|.  .+... ++|++|++++|.++|.+| .+ .. 
T Consensus       288 ~~~lp~~~-~~L----------~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l-~~L~~L~L~~N~l~g~ip-~~-~~-  351 (636)
T 4eco_A          288 GEQLKDDW-QAL----------ADAPVGEKIQIIYIGYNNLK-TFPVETSLQKM-KKLGMLECLYNQLEGKLP-AF-GS-  351 (636)
T ss_dssp             HHHHHHHH-HHH----------HHSGGGGTCCEEECCSSCCS-SCCCHHHHTTC-TTCCEEECCSCCCEEECC-CC-EE-
T ss_pred             cccchHHH-Hhh----------hccccCCCCCEEECCCCcCC-ccCchhhhccC-CCCCEEeCcCCcCccchh-hh-CC-
Confidence            4 333320 000          00112256666666666666 4555  44443 567777777777776666 33 11 


Q ss_pred             cCCcCEEEccCCcCcccCCCCCCCCcEEEccCCcCcCccccccccCCCCccEEEccCCCCCCCCCcccccCCC-CCEEEc
Q 048351          401 ILESPGIDISSNHLEGPSPSLPSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNM-LRILNL  479 (850)
Q Consensus       401 ~~~L~~L~l~~N~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~-L~~L~L  479 (850)
                                                                    +++|++|++++|.++ .+|..+..+++ |++|++
T Consensus       352 ----------------------------------------------l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~L  384 (636)
T 4eco_A          352 ----------------------------------------------EIKLASLNLAYNQIT-EIPANFCGFTEQVENLSF  384 (636)
T ss_dssp             ----------------------------------------------EEEESEEECCSSEEE-ECCTTSEEECTTCCEEEC
T ss_pred             ----------------------------------------------CCCCCEEECCCCccc-cccHhhhhhcccCcEEEc
Confidence                                                          134555666666555 55555666666 666666


Q ss_pred             CCCcccccCCCcccccc--CccEEeccCCccccCCchhhc-------CCCCcCeeccccccceeecchhHHhcCCCCCEE
Q 048351          480 ANNNFSGKIPNSCGYLQ--KMLTLSLHHNNFSGELPSLLK-------NFTHLRVVALEENSISGNIPAWIGESLLNLVVL  550 (850)
Q Consensus       480 s~N~l~~~~p~~~~~l~--~L~~L~Ls~N~l~~~~p~~l~-------~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L  550 (850)
                      ++|.++ .+|..+..++  +|++|++++|++++.+|..+.       .+++|++|++++|+++ .+|..++..+++|++|
T Consensus       385 s~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L  462 (636)
T 4eco_A          385 AHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSI  462 (636)
T ss_dssp             CSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEE
T ss_pred             cCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEE
Confidence            666666 5555555433  566666666666666666555       5667777777777776 6666666556777777


Q ss_pred             EccCCccccccCcCcCC--------CCCcceeecccccCcccCCcccc--CcccCccccccCccccccccccCCCcccCc
Q 048351          551 DLRSNRFYGKIPFQLCH--------LADIQILDLSLNNISGNIPKCFN--NFTAMTQERSYNSSAITFSYAVPSRTTMLP  620 (850)
Q Consensus       551 ~L~~N~l~~~~p~~l~~--------l~~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~  620 (850)
                      ++++|+++ .+|..+..        +++|+.|++++|+++ .+|..+.  .+++|                         
T Consensus       463 ~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L-------------------------  515 (636)
T 4eco_A          463 NLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYL-------------------------  515 (636)
T ss_dssp             ECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTC-------------------------
T ss_pred             ECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCc-------------------------
Confidence            77777776 44443322        227888888888887 5665554  44444                         


Q ss_pred             cceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEec------CCCcCccCCCccccccCCC
Q 048351          621 VHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNL------SRNNLTGYITPKIGQLQSL  694 (850)
Q Consensus       621 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L------s~N~l~~~ip~~l~~l~~L  694 (850)
                                                +.|+|++|++++ +|..++.+++|+.|+|      ++|++.+.+|..++++++|
T Consensus       516 --------------------------~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L  568 (636)
T 4eco_A          516 --------------------------VGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSL  568 (636)
T ss_dssp             --------------------------CEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSC
T ss_pred             --------------------------CEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCC
Confidence                                      778888888886 7778888888888888      5688899999999999999


Q ss_pred             CeeeCCCCcCcccCcccccCCCCCCEEEcCCCcCcc
Q 048351          695 DFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSG  730 (850)
Q Consensus       695 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g  730 (850)
                      ++|+|++|++ +.+|..+.  ++|++||+++|++..
T Consensus       569 ~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~  601 (636)
T 4eco_A          569 TQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNIS  601 (636)
T ss_dssp             CEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCE
T ss_pred             CEEECCCCcC-CccCHhHh--CcCCEEECcCCCCcc
Confidence            9999999999 67888776  799999999998874

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=2.7e-53  Score=500.06  Aligned_cols=518  Identities=19%  Similarity=0.151  Sum_probs=339.1

Q ss_pred             cccccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCCcccc
Q 048351          114 TLNPALLKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAGNLDWI  193 (850)
Q Consensus       114 ~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~l  193 (850)
                      .+|..+.  ++|++|+|++|.+++. .+..++++++|++|+|++|.+++..|.+|+++++|++|+|++|++. ...+..+
T Consensus        25 ~ip~~~~--~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~-~~~p~~~  100 (606)
T 3vq2_A           25 KVPDDIP--SSTKNIDLSFNPLKIL-KSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQ-SFSPGSF  100 (606)
T ss_dssp             SCCTTSC--TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-CCCTTSS
T ss_pred             cCCCCCC--CCcCEEECCCCCcCEe-ChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCccc-ccChhhc
Confidence            3555443  7888888888888864 5567888888888888888888877888888888888888888753 3345568


Q ss_pred             ccCCCccEEeCCCCCCCCCcchhhhhcCCCCCcEEEccCCCCCC-CCCccccccccCCCCcccEEEccCCCCCCccchhh
Q 048351          194 SQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQL-QPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWL  272 (850)
Q Consensus       194 ~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l  272 (850)
                      +++++|++|++++|.+++.+  +..++++++|++|++++|.+++ ..|    ..+.++ ++|++|++++|++++..+.. 
T Consensus       101 ~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~lp----~~~~~l-~~L~~L~Ls~n~l~~~~~~~-  172 (606)
T 3vq2_A          101 SGLTSLENLVAVETKLASLE--SFPIGQLITLKKLNVAHNFIHSCKLP----AYFSNL-TNLVHVDLSYNYIQTITVND-  172 (606)
T ss_dssp             TTCTTCCEEECTTSCCCCSS--SSCCTTCTTCCEEECCSSCCCCCCCC----GGGGTC-TTCCEEECCSSCCCEECTTT-
T ss_pred             CCcccCCEEEccCCcccccc--ccccCCCCCCCEEeCCCCcccceech----HhHhhc-CCCCEEEccCCcceecChhh-
Confidence            88888888888888887753  2457888888888888888875 334    455566 88888888888887753333 


Q ss_pred             hcCCCCCCCCCCCCC----CcEEEccCCcCCcccchhhhcCCCCcEEEccCCccccccccccccccccccCCCCCChhcc
Q 048351          273 FNVSSIPDAPGPMIS----LRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQ  348 (850)
Q Consensus       273 ~~l~~ip~~l~~l~~----L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~~~l~~~~p~~l~  348 (850)
                               ++.+++    +++|++++|.+++..+..+... +|++|++++|.+.+..                +|.++.
T Consensus       173 ---------~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~----------------~~~~~~  226 (606)
T 3vq2_A          173 ---------LQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNI----------------MKTCLQ  226 (606)
T ss_dssp             ---------THHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHH----------------HHHHHH
T ss_pred             ---------hhhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhH----------------HHHHhc
Confidence                     333333    3478888888886555544444 7888888888776432                233467


Q ss_pred             CCCCCCEEEccCCcCCCC------C---chhHhhcCcCCCEEec-ccCcCcccCChhhhhhccCCcCEEEccCCcCcccC
Q 048351          349 TQKHFSVLDISSAGISDS------I---PDWFSDTSHKLADLNF-SHNQMTGRFPNYISSMFILESPGIDISSNHLEGPS  418 (850)
Q Consensus       349 ~l~~L~~L~Ls~n~l~~~------~---~~~~~~~~~~L~~L~L-s~N~l~~~~p~~~~~~~~~~L~~L~l~~N~l~~~~  418 (850)
                      +++.|+.+++..+.+.+.      .   +..+...  .++.+++ ..|.+.+.+|. + ... .+++.+++++|.++...
T Consensus       227 ~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l--~l~~l~l~~~~~~~~~~~~-~-~~l-~~L~~L~l~~~~~~~l~  301 (606)
T 3vq2_A          227 NLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDV--TIDEFRLTYTNDFSDDIVK-F-HCL-ANVSAMSLAGVSIKYLE  301 (606)
T ss_dssp             TTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGS--EEEEEEECCCTTCCGGGGS-C-GGG-TTCSEEEEESCCCCCCC
T ss_pred             cccccccccccccccccCCcccccChHHhhhhhhc--cHhheeccccccccccccc-c-ccC-CCCCEEEecCccchhhh
Confidence            777777777765444321      1   1111111  3455555 55666666665 3 222 66777777777765433


Q ss_pred             CCC--CCCCcEEEccCCcCcCccccccccCCCCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCccccc--CCCcccc
Q 048351          419 PSL--PSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGK--IPNSCGY  494 (850)
Q Consensus       419 ~~~--~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~--~p~~~~~  494 (850)
                       ..  +++|++|++++|.+ +.++..   .+++|++|++++|...+..  .+..+++|++|++++|.+++.  +|..+..
T Consensus       302 -~l~~~~~L~~L~l~~n~l-~~lp~~---~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~  374 (606)
T 3vq2_A          302 -DVPKHFKWQSLSIIRCQL-KQFPTL---DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLG  374 (606)
T ss_dssp             -CCCTTCCCSEEEEESCCC-SSCCCC---CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHC
T ss_pred             -hccccccCCEEEcccccC-cccccC---CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhcc
Confidence             22  45666666666666 444432   3466666666666443333  345666666666666666654  2555666


Q ss_pred             ccCccEEeccCCccccCCchhhcCCCCcCeeccccccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCccee
Q 048351          495 LQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQIL  574 (850)
Q Consensus       495 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L  574 (850)
                      +++|++|++++|.+++ +|..+..+++|+.|++++|++.+..|...+..+++|++|++++|.+++..|..+..+++|++|
T Consensus       375 ~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  453 (606)
T 3vq2_A          375 TNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTL  453 (606)
T ss_dssp             CSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEE
T ss_pred             CCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEE
Confidence            6666666666666653 445666666666666666666644442222356666666666666666666666666666666


Q ss_pred             ecccccCcc-cCCccccCcccCccccccCccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCC
Q 048351          575 DLSLNNISG-NIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSS  653 (850)
Q Consensus       575 ~Ls~N~l~~-~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~  653 (850)
                      ++++|++++ .+|..+.++++|                                                   +.|+|++
T Consensus       454 ~l~~n~l~~~~~~~~~~~l~~L---------------------------------------------------~~L~Ls~  482 (606)
T 3vq2_A          454 KMAGNSFKDNTLSNVFANTTNL---------------------------------------------------TFLDLSK  482 (606)
T ss_dssp             ECTTCEEGGGEECSCCTTCTTC---------------------------------------------------CEEECTT
T ss_pred             ECCCCcCCCcchHHhhccCCCC---------------------------------------------------CEEECCC
Confidence            666666665 245555444444                                                   6777777


Q ss_pred             CCCCCCChhhhhccccCCeEecCCCcCccCCCccccccCCCCeeeCCCCcCcccCcccccCCC-CCCEEEcCCCcCcccC
Q 048351          654 NKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVN-RLSVMDLSHNNLSGKI  732 (850)
Q Consensus       654 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~ls~N~l~g~i  732 (850)
                      |++++..|..++++++|+.|+|++|++++.+|..++++++|++|||++|+++ .+|..+..++ +|++|++++|++.|..
T Consensus       483 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c  561 (606)
T 3vq2_A          483 CQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACIC  561 (606)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSS
T ss_pred             CcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCC
Confidence            7777777777777777777777777777777777777777777777777777 5566677765 4777777777777665


Q ss_pred             CC
Q 048351          733 PT  734 (850)
Q Consensus       733 P~  734 (850)
                      |.
T Consensus       562 ~~  563 (606)
T 3vq2_A          562 EH  563 (606)
T ss_dssp             TT
T ss_pred             cc
Confidence            53

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=2.1e-52  Score=492.49  Aligned_cols=509  Identities=19%  Similarity=0.137  Sum_probs=423.4

Q ss_pred             CCCcccccccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCcccCCCCCCcEEEccCCCCCCCC
Q 048351          109 ASLRGTLNPALLKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAG  188 (850)
Q Consensus       109 ~~l~g~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~  188 (850)
                      +.+++..+.+|.++++|++|+|++|.+++. .|..++++++|++|+|++|.+++..|.+|+++++|++|++++|++... 
T Consensus        42 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i-~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-  119 (606)
T 3vq2_A           42 NPLKILKSYSFSNFSELQWLDLSRCEIETI-EDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASL-  119 (606)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCS-
T ss_pred             CCcCEeChhhccCCccCcEEeCCCCccccc-CHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccc-
Confidence            577777788999999999999999999975 678899999999999999999998899999999999999999997433 


Q ss_pred             CccccccCCCccEEeCCCCCCCCCcchhhhhcCCCCCcEEEccCCCCCCCCCccccccccCCCCc----ccEEEccCCCC
Q 048351          189 NLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPS----LETLGLSYNNL  264 (850)
Q Consensus       189 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~----L~~L~Ls~N~l  264 (850)
                      .+..++++++|++|++++|.+++. .+|..++++++|++|++++|.+++.++    ..+..+ ++    +++|++++|.+
T Consensus       120 ~~~~~~~l~~L~~L~L~~n~l~~~-~lp~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l-~~L~~~l~~L~l~~n~l  193 (606)
T 3vq2_A          120 ESFPIGQLITLKKLNVAHNFIHSC-KLPAYFSNLTNLVHVDLSYNYIQTITV----NDLQFL-RENPQVNLSLDMSLNPI  193 (606)
T ss_dssp             SSSCCTTCTTCCEEECCSSCCCCC-CCCGGGGTCTTCCEEECCSSCCCEECT----TTTHHH-HHCTTCCCEEECTTCCC
T ss_pred             cccccCCCCCCCEEeCCCCcccce-echHhHhhcCCCCEEEccCCcceecCh----hhhhhh-hccccccceeeccCCCc
Confidence            334589999999999999999864 257889999999999999999998766    334333 44    45899999999


Q ss_pred             CCccchhhhcCCCCCCCCCCCCCCcEEEccCCcCC-cccchhhhcCCCCcEEEccCCccccccccccccccccccCCCCC
Q 048351          265 TASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELD-GEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHF  343 (850)
Q Consensus       265 ~~~~~~~l~~l~~ip~~l~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~~~l~~~~  343 (850)
                      ++.           |.......+|++|++++|.++ +.+|..+.++++|+.+++..+.+.+.....        .+.+..
T Consensus       194 ~~~-----------~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~--------~~~~~~  254 (606)
T 3vq2_A          194 DFI-----------QDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLE--------IFEPSI  254 (606)
T ss_dssp             CEE-----------CTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCS--------CCCGGG
T ss_pred             cee-----------CcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCccc--------ccChHH
Confidence            863           333334448999999999997 467888999999999998776654321110        011111


Q ss_pred             ChhccCCCCCCEEEc-cCCcCCCCCchhHhhcCcCCCEEecccCcCcccCChhhhhhccCCcCEEEccCCcCcccCCC-C
Q 048351          344 PKWLQTQKHFSVLDI-SSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPS-L  421 (850)
Q Consensus       344 p~~l~~l~~L~~L~L-s~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~l~~N~l~~~~~~-~  421 (850)
                      +..+..+ .++.+++ ..+.+.+.+|. +. .+++|+.|++++|.+.. +| .+ ... .+++.|++++|.+ +.+|. .
T Consensus       255 ~~~l~~l-~l~~l~l~~~~~~~~~~~~-~~-~l~~L~~L~l~~~~~~~-l~-~l-~~~-~~L~~L~l~~n~l-~~lp~~~  326 (606)
T 3vq2_A          255 MEGLCDV-TIDEFRLTYTNDFSDDIVK-FH-CLANVSAMSLAGVSIKY-LE-DV-PKH-FKWQSLSIIRCQL-KQFPTLD  326 (606)
T ss_dssp             GTTGGGS-EEEEEEECCCTTCCGGGGS-CG-GGTTCSEEEEESCCCCC-CC-CC-CTT-CCCSEEEEESCCC-SSCCCCC
T ss_pred             hhhhhhc-cHhheeccccccccccccc-cc-cCCCCCEEEecCccchh-hh-hc-ccc-ccCCEEEcccccC-cccccCC
Confidence            2222333 4667777 77888888887 44 45799999999999974 55 44 233 7899999999999 55554 4


Q ss_pred             CCCCcEEEccCCcCcCccccccccCCCCccEEEccCCCCCCC--CCcccccCCCCCEEEcCCCcccccCCCccccccCcc
Q 048351          422 PSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGK--LPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKML  499 (850)
Q Consensus       422 ~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~--~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~  499 (850)
                      +++|++|++++|...+.++   ...+++|++|++++|.+++.  +|..+..+++|++|++++|.+++ +|..+..+++|+
T Consensus       327 l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~  402 (606)
T 3vq2_A          327 LPFLKSLTLTMNKGSISFK---KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQ  402 (606)
T ss_dssp             CSSCCEEEEESCSSCEECC---CCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCC
T ss_pred             CCccceeeccCCcCccchh---hccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCC
Confidence            7899999999997666543   22568999999999999866  48889999999999999999985 668899999999


Q ss_pred             EEeccCCccccCCc-hhhcCCCCcCeeccccccceeecchhHHhcCCCCCEEEccCCcccc-ccCcCcCCCCCcceeecc
Q 048351          500 TLSLHHNNFSGELP-SLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYG-KIPFQLCHLADIQILDLS  577 (850)
Q Consensus       500 ~L~Ls~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~-~~p~~l~~l~~L~~L~Ls  577 (850)
                      +|++++|++.+..| ..+..+++|++|++++|++++.+|..+. .+++|++|++++|.+++ .+|..+..+++|++|+++
T Consensus       403 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls  481 (606)
T 3vq2_A          403 HLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFL-GLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLS  481 (606)
T ss_dssp             EEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTT-TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECT
T ss_pred             eeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhc-CCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECC
Confidence            99999999998877 6899999999999999999987887776 79999999999999998 479999999999999999


Q ss_pred             cccCcccCCccccCcccCccccccCccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCC
Q 048351          578 LNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLG  657 (850)
Q Consensus       578 ~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~  657 (850)
                      +|++++..|..+.++++|                                                   ++|+|++|+++
T Consensus       482 ~n~l~~~~~~~~~~l~~L---------------------------------------------------~~L~Ls~N~l~  510 (606)
T 3vq2_A          482 KCQLEQISWGVFDTLHRL---------------------------------------------------QLLNMSHNNLL  510 (606)
T ss_dssp             TSCCCEECTTTTTTCTTC---------------------------------------------------CEEECCSSCCS
T ss_pred             CCcCCccChhhhcccccC---------------------------------------------------CEEECCCCcCC
Confidence            999999888888777666                                                   89999999999


Q ss_pred             CCChhhhhccccCCeEecCCCcCccCCCccccccC-CCCeeeCCCCcCcccCc
Q 048351          658 GEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQ-SLDFLDLSRNQFSGGIP  709 (850)
Q Consensus       658 ~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~-~L~~L~Ls~N~l~~~~p  709 (850)
                      +.+|..++++++|+.|+|++|+++ .+|..+..++ +|++|++++|.+.+..+
T Consensus       511 ~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~  562 (606)
T 3vq2_A          511 FLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICE  562 (606)
T ss_dssp             CEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred             CcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence            999999999999999999999999 5777799987 69999999999997554

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=6.2e-52  Score=488.45  Aligned_cols=511  Identities=18%  Similarity=0.143  Sum_probs=423.8

Q ss_pred             CCCcccccccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCcccCCCCCCcEEEccCCCCCCCC
Q 048351          109 ASLRGTLNPALLKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAG  188 (850)
Q Consensus       109 ~~l~g~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~  188 (850)
                      +.+++..|.+|.++++|++|+|++|.+++. .|..++++++|++|+|++|.+++..|..|+++++|++|++++|++.. .
T Consensus        43 n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~-l  120 (606)
T 3t6q_A           43 NVLPTIQNTTFSRLINLTFLDLTRCQIYWI-HEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISS-I  120 (606)
T ss_dssp             CCCSEECTTTSTTCTTCSEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSC-G
T ss_pred             CccCcCChhHhccCccceEEECCCCcccee-ChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCccc-C
Confidence            577877788999999999999999999975 78899999999999999999999999999999999999999999643 2


Q ss_pred             CccccccCCCccEEeCCCCCCCCCcchhhhhcCCCCCcEEEccCCCCCCCCCccccccccCCCCccc--EEEccCCCCCC
Q 048351          189 NLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLE--TLGLSYNNLTA  266 (850)
Q Consensus       189 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~--~L~Ls~N~l~~  266 (850)
                      .+..++++++|++|++++|.+++.+  ...+..+++|++|++++|.+++..+    ..+..+ ++|+  .|++++|++++
T Consensus       121 ~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l-~~L~~l~L~l~~n~l~~  193 (606)
T 3t6q_A          121 DFIPLHNQKTLESLYLGSNHISSIK--LPKGFPTEKLKVLDFQNNAIHYLSK----EDMSSL-QQATNLSLNLNGNDIAG  193 (606)
T ss_dssp             GGSCCTTCTTCCEEECCSSCCCCCC--CCTTCCCTTCCEEECCSSCCCEECH----HHHHTT-TTCCSEEEECTTCCCCE
T ss_pred             CcchhccCCcccEEECCCCcccccC--cccccCCcccCEEEcccCcccccCh----hhhhhh-cccceeEEecCCCccCc
Confidence            2345899999999999999999852  1344559999999999999997766    455566 8888  89999999997


Q ss_pred             ccchhhhcCCCCCCCCCCCCCCcEEEccCCcCCcccchhhhcCCCCcEEEccCCccccccccccccccccccCCCCCChh
Q 048351          267 SIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKW  346 (850)
Q Consensus       267 ~~~~~l~~l~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~~~l~~~~p~~  346 (850)
                      ..|.          .+ ...+|++|++++|.   .++..+..+.+++...+....+.+...         ..+.+.....
T Consensus       194 ~~~~----------~~-~~~~L~~L~l~~~~---~~~~~~~~l~~~~l~~l~~~~~~~~~~---------~~i~~~~~~~  250 (606)
T 3t6q_A          194 IEPG----------AF-DSAVFQSLNFGGTQ---NLLVIFKGLKNSTIQSLWLGTFEDMDD---------EDISPAVFEG  250 (606)
T ss_dssp             ECTT----------TT-TTCEEEEEECTTCS---CHHHHHHHTTTCEEEEEECCCCTTSCC---------CCCCGGGGGG
T ss_pred             cChh----------Hh-hhccccccccCCch---hHHHHhhhccccchhheechhhccccc---------cccChhHhch
Confidence            5333          23 34689999999997   466677777776665555443332111         1111111111


Q ss_pred             ccCCCCCCEEEccCCcCCCCCchhHhhcCcCCCEEecccCcCcccCChhhhhhccCCcCEEEccCCcCcccCCCC---CC
Q 048351          347 LQTQKHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSL---PS  423 (850)
Q Consensus       347 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~l~~N~l~~~~~~~---~~  423 (850)
                      +... +|+.|++++|.+++..+..+... ++|++|++++|.++ .+|..+ ... ++++.|++++|.+++..|..   ++
T Consensus       251 l~~~-~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~-~lp~~l-~~l-~~L~~L~l~~n~l~~~~~~~~~~l~  325 (606)
T 3t6q_A          251 LCEM-SVESINLQKHYFFNISSNTFHCF-SGLQELDLTATHLS-ELPSGL-VGL-STLKKLVLSANKFENLCQISASNFP  325 (606)
T ss_dssp             GGGS-EEEEEECTTCCCSSCCTTTTTTC-TTCSEEECTTSCCS-CCCSSC-CSC-TTCCEEECTTCCCSBGGGGCGGGCT
T ss_pred             hhcC-ceeEEEeecCccCccCHHHhccc-cCCCEEeccCCccC-CCChhh-ccc-ccCCEEECccCCcCcCchhhhhccC
Confidence            2222 78899999999988777766554 68999999999988 667666 333 78999999999998876643   78


Q ss_pred             CCcEEEccCCcCcCccccccccCCCCccEEEccCCCCCCCC--CcccccCCCCCEEEcCCCcccccCCCccccccCccEE
Q 048351          424 NAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKL--PDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTL  501 (850)
Q Consensus       424 ~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~--p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  501 (850)
                      +|++|++++|.+.+.++......+++|++|++++|.+++..  +..+..+++|++|++++|.+.+..|..+..+++|++|
T Consensus       326 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  405 (606)
T 3t6q_A          326 SLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELL  405 (606)
T ss_dssp             TCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEE
T ss_pred             cCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeE
Confidence            89999999999988777655556799999999999998765  7789999999999999999999999999999999999


Q ss_pred             eccCCccccCCch-hhcCCCCcCeeccccccceeecchhHHhcCCCCCEEEccCCccccc---cCcCcCCCCCcceeecc
Q 048351          502 SLHHNNFSGELPS-LLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGK---IPFQLCHLADIQILDLS  577 (850)
Q Consensus       502 ~Ls~N~l~~~~p~-~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~---~p~~l~~l~~L~~L~Ls  577 (850)
                      ++++|++++..|. .+..+++|++|++++|.+++..|..+. .+++|++|++++|.+++.   .+..+..+++|++|+++
T Consensus       406 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls  484 (606)
T 3t6q_A          406 DLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFD-GLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLS  484 (606)
T ss_dssp             ECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTT-TCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECT
T ss_pred             ECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHh-CCCCCCEEECCCCCCCccccccchhhccCCCccEEECC
Confidence            9999999977654 489999999999999999966676665 699999999999999873   23568899999999999


Q ss_pred             cccCcccCCccccCcccCccccccCccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCC
Q 048351          578 LNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLG  657 (850)
Q Consensus       578 ~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~  657 (850)
                      +|++++..|..+.++++|                                                   +.|+|++|+++
T Consensus       485 ~n~l~~~~~~~~~~l~~L---------------------------------------------------~~L~Ls~N~l~  513 (606)
T 3t6q_A          485 FCDLSSIDQHAFTSLKMM---------------------------------------------------NHVDLSHNRLT  513 (606)
T ss_dssp             TSCCCEECTTTTTTCTTC---------------------------------------------------CEEECCSSCCC
T ss_pred             CCccCccChhhhccccCC---------------------------------------------------CEEECCCCccC
Confidence            999999888888777666                                                   89999999999


Q ss_pred             CCChhhhhccccCCeEecCCCcCccCCCccccccCCCCeeeCCCCcCcccCc
Q 048351          658 GEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIP  709 (850)
Q Consensus       658 ~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p  709 (850)
                      +..|..+.+++.| .|+|++|++++.+|..++.+++|+.|++++|.+.+..+
T Consensus       514 ~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  564 (606)
T 3t6q_A          514 SSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS  564 (606)
T ss_dssp             GGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred             cCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence            9999999999999 99999999999999999999999999999999997655

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=1.2e-51  Score=502.16  Aligned_cols=534  Identities=21%  Similarity=0.151  Sum_probs=406.5

Q ss_pred             ccccceEecCCCCCEEEEEcCCCCCcccchhhhhccCCCCCCcccccccccCCCCCCEEeCCCCCCCCCCC-CcccCCCC
Q 048351           70 CNWRGVRCSNQTGHVKVLDLHGTGRVKVLDIQTRVMSGNASLRGTLNPALLKLHYLRHLDLSFNNFSGSQI-PMFIGSLS  148 (850)
Q Consensus        70 c~w~gv~C~~~~~~v~~l~L~~~~~l~~l~l~~~~~~~~~~l~g~l~~~l~~l~~L~~L~Ls~n~l~~~~~-p~~~~~l~  148 (850)
                      |.|..|.+  ...+++.+||++                 +.+++..+.+|.++++|++|||++|.+.+. + |..+++++
T Consensus        14 ~~L~~vP~--lp~~l~~LdLs~-----------------N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~-i~~~~f~~L~   73 (844)
T 3j0a_A           14 CNLTQVPQ--VLNTTERLLLSF-----------------NYIRTVTASSFPFLEQLQLLELGSQYTPLT-IDKEAFRNLP   73 (844)
T ss_dssp             CCSSCCCS--SCTTCCEEEEES-----------------CCCCEECSSSCSSCCSCSEEEECTTCCCCE-ECTTTTSSCT
T ss_pred             CCCCCCCC--CCCCcCEEECCC-----------------CcCCccChhHCcccccCeEEeCCCCCCccc-cCHHHhcCCC
Confidence            56777776  356788888877                 577888888999999999999999976654 5 77899999


Q ss_pred             CCCEEeCCCCCCCCCCCcccCCCCCCcEEEccCCCCCCCC-CccccccCCCccEEeCCCCCCCCCcchhhhhcCCCCCcE
Q 048351          149 KLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAG-NLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKT  227 (850)
Q Consensus       149 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~  227 (850)
                      +|++|+|++|.+++..|..|+++++|++|+|++|.+.... ...++.++++|++|+|++|.+++.. .+..++++++|++
T Consensus        74 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~-~~~~~~~L~~L~~  152 (844)
T 3j0a_A           74 NLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLY-LHPSFGKLNSLKS  152 (844)
T ss_dssp             TCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCC-CCGGGGTCSSCCE
T ss_pred             CCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccc-cchhHhhCCCCCE
Confidence            9999999999999988999999999999999999874322 2234889999999999999998862 2357899999999


Q ss_pred             EEccCCCCCCCCCccccccccCC-CCcccEEEccCCCCCCccchhhhcCCCCCCCCCCCCCCcEEEccCCcCCcccchhh
Q 048351          228 LYLEQCDLQLQPTIHRSFSHLNS-SPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIPKFF  306 (850)
Q Consensus       228 L~L~~n~l~~~~~~~~~~~~~~~-~~~L~~L~Ls~N~l~~~~~~~l~~l~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l  306 (850)
                      |++++|.+++..+    ..+..+ .++|+.|++++|.+.+..|..+..+.   ..+.. ..|++|++++|.+++.++..+
T Consensus       153 L~Ls~N~i~~~~~----~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~---~~~~~-~~L~~L~Ls~n~l~~~~~~~~  224 (844)
T 3j0a_A          153 IDFSSNQIFLVCE----HELEPLQGKTLSFFSLAANSLYSRVSVDWGKCM---NPFRN-MVLEILDVSGNGWTVDITGNF  224 (844)
T ss_dssp             EEEESSCCCCCCS----GGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSS---CTTTT-CCBSEEBCSSCCSSTTTTSGG
T ss_pred             EECCCCcCCeeCH----HHcccccCCccceEECCCCccccccccchhhcC---Ccccc-CceeEEecCCCcCchhHHHHH
Confidence            9999999988766    333221 16899999999999987554432211   11222 259999999999998888777


Q ss_pred             hcC---CCCcEEEccCCccccccccccccccccccCCCCCChhccCC--CCCCEEEccCCcCCCCCchhHhhcCcCCCEE
Q 048351          307 QNM---FKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQ--KHFSVLDISSAGISDSIPDWFSDTSHKLADL  381 (850)
Q Consensus       307 ~~l---~~L~~L~L~~N~l~~~~~~~~~~~l~~~~l~~~~p~~l~~l--~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L  381 (850)
                      ...   ++++.+.++.+.+....        ..+.+.+..+..+..+  ++|+.|++++|.+.+..+..+... ++|+.|
T Consensus       225 ~~~l~~~~l~~L~l~~~~~~~~~--------~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L  295 (844)
T 3j0a_A          225 SNAISKSQAFSLILAHHIMGAGF--------GFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETL-KDLKVL  295 (844)
T ss_dssp             GGTSCSCCBSEEECCSSCCBCSS--------SCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSC-CCCCEE
T ss_pred             HhhcCcccccceecccccccccc--------cccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcC-CCCCEE
Confidence            643   57888888755433211        1112222222234443  689999999999988777776554 789999


Q ss_pred             ecccCcCcccCChhhhhhccCCcCEEEccCCcCcccCCCC---CCCCcEEEccCCcCcCccccccccCCCCccEEEccCC
Q 048351          382 NFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSL---PSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSN  458 (850)
Q Consensus       382 ~Ls~N~l~~~~p~~~~~~~~~~L~~L~l~~N~l~~~~~~~---~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n  458 (850)
                      ++++|.+++..|..+ ... .+|+.|++++|.+++..+..   +++|++|++++|.+.+..+... ..+++|++|++++|
T Consensus       296 ~L~~n~i~~~~~~~~-~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~-~~l~~L~~L~Ls~N  372 (844)
T 3j0a_A          296 NLAYNKINKIADEAF-YGL-DNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTF-KFLEKLQTLDLRDN  372 (844)
T ss_dssp             EEESCCCCEECTTTT-TTC-SSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCS-CSCCCCCEEEEETC
T ss_pred             ECCCCcCCCCChHHh-cCC-CCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhh-cCCCCCCEEECCCC
Confidence            999999998888877 333 78999999999998876654   6678888888888876555432 25678888888888


Q ss_pred             CCCCCCCcccccCCCCCEEEcCCCcccccCCCccccccCccEEeccCCccccCC-chhhcCCCCcCeeccccccceeecc
Q 048351          459 LLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGEL-PSLLKNFTHLRVVALEENSISGNIP  537 (850)
Q Consensus       459 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~L~~N~l~~~ip  537 (850)
                      .+++. +    .+++|+.|++++|+++ .+|..   ..+++.|++++|++++.. +..+..+++|+.|++++|++++..+
T Consensus       373 ~l~~i-~----~~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~  443 (844)
T 3j0a_A          373 ALTTI-H----FIPSIPDIFLSGNKLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSG  443 (844)
T ss_dssp             CSCCC-S----SCCSCSEEEEESCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCS
T ss_pred             CCCcc-c----CCCCcchhccCCCCcc-ccccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCccccccc
Confidence            88742 2    2778888888888887 45543   457888888888888532 3345678888888888888875444


Q ss_pred             hhHHhcCCCCCEEEccCCccc-----cccCcCcCCCCCcceeecccccCcccCCccccCcccCccccccCcccccccccc
Q 048351          538 AWIGESLLNLVVLDLRSNRFY-----GKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAV  612 (850)
Q Consensus       538 ~~~~~~l~~L~~L~L~~N~l~-----~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~  612 (850)
                      ......+++|++|++++|.++     +..+..|..+++|+.|+|++|++++..|..|.++++|                 
T Consensus       444 ~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L-----------------  506 (844)
T 3j0a_A          444 DQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTAL-----------------  506 (844)
T ss_dssp             SSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSC-----------------
T ss_pred             ccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhh-----------------
Confidence            333335788888888888886     3445567788888888888888888777777666655                 


Q ss_pred             CCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCCCccccccC
Q 048351          613 PSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQ  692 (850)
Q Consensus       613 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~  692 (850)
                                                        +.|+|++|++++..|..+.  ++|+.|+|++|++++.+|..|   .
T Consensus       507 ----------------------------------~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~  547 (844)
T 3j0a_A          507 ----------------------------------RGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF---V  547 (844)
T ss_dssp             ----------------------------------SEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---S
T ss_pred             ----------------------------------heeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHh---C
Confidence                                              8999999999988777766  899999999999999999876   4


Q ss_pred             CCCeeeCCCCcCcccCc
Q 048351          693 SLDFLDLSRNQFSGGIP  709 (850)
Q Consensus       693 ~L~~L~Ls~N~l~~~~p  709 (850)
                      +|+.|++++|.+.+..+
T Consensus       548 ~L~~l~l~~Np~~C~c~  564 (844)
T 3j0a_A          548 SLSVLDITHNKFICECE  564 (844)
T ss_dssp             SCCEEEEEEECCCCSSS
T ss_pred             CcCEEEecCCCcccccc
Confidence            79999999999987543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=1.2e-51  Score=492.46  Aligned_cols=504  Identities=17%  Similarity=0.231  Sum_probs=281.1

Q ss_pred             CCCCcHHHHHHHHHhhhcCCCCCCCCCCCCCCC--CCCCC--ccc------------cceEecCCCCCEEEEEcCCCCCc
Q 048351           32 SIRCIEEERKALLKFKQGLVDEFGFLSSWGSEG--EKKDC--CNW------------RGVRCSNQTGHVKVLDLHGTGRV   95 (850)
Q Consensus        32 ~~~~~~~~~~~Ll~~k~~~~~~~~~l~~W~~~~--~~~~~--c~w------------~gv~C~~~~~~v~~l~L~~~~~l   95 (850)
                      ..++..+|+.||++||+++.+|     +|+..+  ...+|  |.|            .||+|+. .+||+.++|++    
T Consensus       263 ~~~~~~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~----  332 (876)
T 4ecn_A          263 ETAEYIKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAG----  332 (876)
T ss_dssp             CCCHHHHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTT----
T ss_pred             ccccchHHHHHHHHHHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECcc----
Confidence            4456788999999999999876     786311  01355  999            9999986 68999999998    


Q ss_pred             ccchhhhhccCCCCCCcccccccccCCCCCCEEeC-CCCCCCCCCCCcccCCCC-CCCE--------------EeC-CCC
Q 048351           96 KVLDIQTRVMSGNASLRGTLNPALLKLHYLRHLDL-SFNNFSGSQIPMFIGSLS-KLEY--------------LDL-FAA  158 (850)
Q Consensus        96 ~~l~l~~~~~~~~~~l~g~l~~~l~~l~~L~~L~L-s~n~l~~~~~p~~~~~l~-~L~~--------------L~L-s~n  158 (850)
                                   +++.|.+|++|++|++|++||| ++|.++|. .|....... .+..              ++. ...
T Consensus       333 -------------~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~-~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~  398 (876)
T 4ecn_A          333 -------------FGAKGRVPDAIGQLTELKVLSFGTHSETVSG-RLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRL  398 (876)
T ss_dssp             -------------TCCEEEECGGGGGCTTCCEEESCCTTHHHHT-TCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGG
T ss_pred             -------------CCCCCcCchHHhccccceEeeeccccccccc-ccccccccccccchhHHHHHHHhhhhhhhccCcch
Confidence                         5899999999999999999999 88988764 332211010 0000              000 000


Q ss_pred             CCCC-----------CCCcccCCCCCCcEEEccC--CCCCCCCCccccccCCCccEEeCCCCCCCCCcchhhhhcCCCCC
Q 048351          159 SFSG-----------PIPPLLGNLSRLQYLSLGY--NKLLRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSL  225 (850)
Q Consensus       159 ~l~~-----------~~p~~l~~l~~L~~L~Ls~--N~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L  225 (850)
                      .+++           ..+........++.+.+..  |++..  .+..++++++|++|+|++|++++.. ++....     
T Consensus       399 ~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~--IP~~l~~L~~L~~L~Ls~N~Lsg~~-i~~~~~-----  470 (876)
T 4ecn_A          399 NLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF--ISKAIQRLTKLQIIYFANSPFTYDN-IAVDWE-----  470 (876)
T ss_dssp             GSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE--ECGGGGGCTTCCEEEEESCCCCGGG-BSSSCS-----
T ss_pred             hhhHHHHHHhhhCccccccccccccchhhceeccccCcccc--hhHHHhcCCCCCEEECcCCcCCCCc-cccccc-----
Confidence            0000           0011111222233332322  33322  3344666666666666666665510 000000     


Q ss_pred             cEEEccCCCCCCCCCccccccccCCCCcccEEEccCCCCCCccchhhhcCCCCCCCCC--CCCCCcEEEccCCcCCcccc
Q 048351          226 KTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPG--PMISLRTLTLSDNELDGEIP  303 (850)
Q Consensus       226 ~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~ip~~l~--~l~~L~~L~Ls~N~l~~~~p  303 (850)
                         ..+.                             |.+++.          +|+.++  ++++|++|+|++|.+.+.+|
T Consensus       471 ---~~s~-----------------------------n~~~g~----------iP~~l~f~~L~~L~~L~Ls~N~l~~~iP  508 (876)
T 4ecn_A          471 ---DANS-----------------------------DYAKQY----------ENEELSWSNLKDLTDVELYNCPNMTQLP  508 (876)
T ss_dssp             ---CTTS-----------------------------HHHHHH----------TTSCCCGGGCTTCCEEEEESCTTCCSCC
T ss_pred             ---cccc-----------------------------cccccc----------CChhhhhccCCCCCEEECcCCCCCccCh
Confidence               0000                             111111          222333  44444444444444444444


Q ss_pred             hhhhcCCCCcEEEccCCc-ccc-ccccccccccccccCCCCCChhccCCCCCCEEEccCCcCCCCCch--hHhhcCcCCC
Q 048351          304 KFFQNMFKLEGLSLRGNS-LEG-VISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAGISDSIPD--WFSDTSHKLA  379 (850)
Q Consensus       304 ~~l~~l~~L~~L~L~~N~-l~~-~~~~~~~~~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~--~~~~~~~~L~  379 (850)
                      ..++++++|+.|+|++|+ +++ .+|..+ ..+         +..+..+++|+.|++++|.++ .+|.  .+... ++|+
T Consensus       509 ~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i-~~L---------~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L-~~L~  576 (876)
T 4ecn_A          509 DFLYDLPELQSLNIACNRGISAAQLKADW-TRL---------ADDEDTGPKIQIFYMGYNNLE-EFPASASLQKM-VKLG  576 (876)
T ss_dssp             GGGGGCSSCCEEECTTCTTSCHHHHHHHH-HHH---------HHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTC-TTCC
T ss_pred             HHHhCCCCCCEEECcCCCCcccccchHHH-Hhh---------hhcccccCCccEEEeeCCcCC-ccCChhhhhcC-CCCC
Confidence            444444444444444444 443 333210 000         001223345555555555555 4444  44332 4566


Q ss_pred             EEecccCcCcccCChhhhhhccCCcCEEEccCCcCcccCCCCCCCCcEEEccCCcCcCccccccccCCCCccEEEccCCC
Q 048351          380 DLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSLPSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNL  459 (850)
Q Consensus       380 ~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~  459 (850)
                      .|++++|.++ .+| .+ .                                               .+++|+.|++++|.
T Consensus       577 ~L~Ls~N~l~-~lp-~~-~-----------------------------------------------~L~~L~~L~Ls~N~  606 (876)
T 4ecn_A          577 LLDCVHNKVR-HLE-AF-G-----------------------------------------------TNVKLTDLKLDYNQ  606 (876)
T ss_dssp             EEECTTSCCC-BCC-CC-C-----------------------------------------------TTSEESEEECCSSC
T ss_pred             EEECCCCCcc-cch-hh-c-----------------------------------------------CCCcceEEECcCCc
Confidence            6666666555 344 22 1                                               11445555555555


Q ss_pred             CCCCCCcccccCCC-CCEEEcCCCcccccCCCccccccC--ccEEeccCCccccCCchhh---c--CCCCcCeecccccc
Q 048351          460 LSGKLPDCWLQFNM-LRILNLANNNFSGKIPNSCGYLQK--MLTLSLHHNNFSGELPSLL---K--NFTHLRVVALEENS  531 (850)
Q Consensus       460 l~~~~p~~~~~l~~-L~~L~Ls~N~l~~~~p~~~~~l~~--L~~L~Ls~N~l~~~~p~~l---~--~l~~L~~L~L~~N~  531 (850)
                      ++ .+|..+..+++ |+.|++++|.++ .+|..+..++.  |+.|++++|++.+.+|...   .  .+++|+.|++++|+
T Consensus       607 l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~  684 (876)
T 4ecn_A          607 IE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNE  684 (876)
T ss_dssp             CS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSC
T ss_pred             cc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCc
Confidence            55 45555555555 555555555555 45555544432  5566666665555443211   1  23356666666666


Q ss_pred             ceeecchhHHhcCCCCCEEEccCCccccccCcCcCC--------CCCcceeecccccCcccCCcccc--CcccCcccccc
Q 048351          532 ISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCH--------LADIQILDLSLNNISGNIPKCFN--NFTAMTQERSY  601 (850)
Q Consensus       532 l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~--------l~~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~l~~~  601 (850)
                      ++ .+|..++..+++|+.|+|++|+++ .+|..+..        +++|+.|+|++|+++ .+|..+.  .+++|      
T Consensus       685 L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L------  755 (876)
T 4ecn_A          685 IQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYL------  755 (876)
T ss_dssp             CC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTC------
T ss_pred             CC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCc------
Confidence            66 566666555666666666666666 44443332        226777777777776 5555443  33333      


Q ss_pred             CccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCC----
Q 048351          602 NSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSR----  677 (850)
Q Consensus       602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~----  677 (850)
                                                                   +.|+|++|++++ +|..++.+++|+.|+|++    
T Consensus       756 ---------------------------------------------~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~l  789 (876)
T 4ecn_A          756 ---------------------------------------------SNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDA  789 (876)
T ss_dssp             ---------------------------------------------CEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCT
T ss_pred             ---------------------------------------------CEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCc
Confidence                                                         667777777775 566777777777777755    


Q ss_pred             --CcCccCCCccccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCCcCccc
Q 048351          678 --NNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGK  731 (850)
Q Consensus       678 --N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~  731 (850)
                        |++.+.+|..++++++|+.|+|++|++ +.+|..+.  ++|+.||+++|++...
T Consensus       790 s~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i  842 (876)
T 4ecn_A          790 EGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISI  842 (876)
T ss_dssp             TCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEE
T ss_pred             ccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCcc
Confidence              778888888888888999999999988 67887766  5888999999988643

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=2.1e-48  Score=455.00  Aligned_cols=500  Identities=20%  Similarity=0.172  Sum_probs=347.5

Q ss_pred             CCCCEEeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCCccccccCCCccEE
Q 048351          123 HYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAGNLDWISQLFSLRYL  202 (850)
Q Consensus       123 ~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L  202 (850)
                      +++++|||++|.+++. .+..+.++++|++|+|++|.+++..|..|+++++|++|++++|++.. ..+..+.++++|++|
T Consensus        28 ~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L  105 (570)
T 2z63_A           28 FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS-LALGAFSGLSSLQKL  105 (570)
T ss_dssp             SSCCEEECCSCCCCEE-CTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE-ECTTTTTTCTTCCEE
T ss_pred             ccccEEEccCCccCcc-ChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCc-cCHhhhcCccccccc
Confidence            4677778877777754 45567777777777777777777666777777777777777776422 233456677777777


Q ss_pred             eCCCCCCCCCcchhhhhcCCCCCcEEEccCCCCCCC-CCccccccccCCCCcccEEEccCCCCCCccchhhhcCCCCCCC
Q 048351          203 DLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQ-PTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDA  281 (850)
Q Consensus       203 ~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~ip~~  281 (850)
                      ++++|+++..+.  ..++.+++|++|++++|.+++. .|    ..+.++ ++|++|++++|++++..+..+         
T Consensus       106 ~L~~n~l~~l~~--~~~~~l~~L~~L~L~~n~l~~~~lp----~~~~~l-~~L~~L~l~~n~l~~~~~~~~---------  169 (570)
T 2z63_A          106 VAVETNLASLEN--FPIGHLKTLKELNVAHNLIQSFKLP----EYFSNL-TNLEHLDLSSNKIQSIYCTDL---------  169 (570)
T ss_dssp             ECTTSCCCCSTT--CSCTTCTTCCEEECCSSCCCCCCCC----GGGGGC-TTCCEEECTTSCCCEECGGGG---------
T ss_pred             cccccccccCCC--ccccccccccEEecCCCccceecCh----hhhccc-CCCCEEeCcCCccceecHHHc---------
Confidence            777777766432  2356666666666666666542 23    334444 666666666666655433322         


Q ss_pred             CCCCCCC----cEEEccCCcCCcccchhhhcCCCCcEEEccCCccccccccccccccccccCCCCCChhccCCCCCCEEE
Q 048351          282 PGPMISL----RTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLD  357 (850)
Q Consensus       282 l~~l~~L----~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~~~l~~~~p~~l~~l~~L~~L~  357 (850)
                       +.+++|    +.|++++|.+++..|..+... +|+.|++++|.....                .+|..+..++.++.++
T Consensus       170 -~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~----------------~~~~~~~~l~~l~~~~  231 (570)
T 2z63_A          170 -RVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLN----------------VMKTCIQGLAGLEVHR  231 (570)
T ss_dssp             -HHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTT----------------HHHHHHHTTTTCEEEE
T ss_pred             -cchhccchhhhhcccCCCCceecCHHHhccC-cceeEeccccccccc----------------chhhhhcCccccceee
Confidence             223333    566666666665555554443 566666665532211                1122344444444444


Q ss_pred             ccCCcCCCCCchhHhhcCcCCCEEecccCcCcccCChhhhhhccCCcCEEEccCC-cCcccCCCC---CCCCcEEEccCC
Q 048351          358 ISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSN-HLEGPSPSL---PSNAFYIDLSKN  433 (850)
Q Consensus       358 Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~l~~N-~l~~~~~~~---~~~L~~L~Ls~n  433 (850)
                      +....+...                   ..+.......+.+.....++.++++++ .+.+..+..   +++++.|++++|
T Consensus       232 l~~~~~~~~-------------------~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~  292 (570)
T 2z63_A          232 LVLGEFRNE-------------------GNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSV  292 (570)
T ss_dssp             EEEEECCCC-------------------SSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESC
T ss_pred             eccccccCc-------------------hhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCc
Confidence            332221110                   000101111111222233445555555 444444433   456677777777


Q ss_pred             cCcCccccccccCCCCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCCCccccccCccEEeccCCccccCC-
Q 048351          434 KFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGEL-  512 (850)
Q Consensus       434 ~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-  512 (850)
                      .+++..... . .+ +|++|++++|.+. .+|.  ..+++|+.|++++|.+.+..+.  ..+++|++|++++|++++.. 
T Consensus       293 ~l~~l~~~~-~-~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~  364 (570)
T 2z63_A          293 TIERVKDFS-Y-NF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGC  364 (570)
T ss_dssp             EECSCCBCC-S-CC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEE
T ss_pred             cchhhhhhh-c-cC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCcccc
Confidence            766433222 2 33 8999999999988 5665  4788999999999998876665  67899999999999998654 


Q ss_pred             -chhhcCCCCcCeeccccccceeecchhHHhcCCCCCEEEccCCccccccC-cCcCCCCCcceeecccccCcccCCcccc
Q 048351          513 -PSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIP-FQLCHLADIQILDLSLNNISGNIPKCFN  590 (850)
Q Consensus       513 -p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~~~  590 (850)
                       |..+..+++|++|++++|+++ .+|..+. .+++|++|++++|.+.+..| ..+..+++|++|++++|.+++..|..+.
T Consensus       365 ~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  442 (570)
T 2z63_A          365 CSQSDFGTTSLKYLDLSFNGVI-TMSSNFL-GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN  442 (570)
T ss_dssp             EEHHHHTCSCCCEEECCSCSEE-EEEEEEE-TCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTT
T ss_pred             ccccccccCccCEEECCCCccc-ccccccc-ccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhh
Confidence             788899999999999999998 4555554 79999999999999988766 5688999999999999999988887777


Q ss_pred             CcccCccccccCccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCC-CCChhhhhcccc
Q 048351          591 NFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLG-GEVPEEIMDLVG  669 (850)
Q Consensus       591 ~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~  669 (850)
                      ++++|                                                   +.|++++|+++ +.+|..+..+++
T Consensus       443 ~l~~L---------------------------------------------------~~L~l~~n~l~~~~~p~~~~~l~~  471 (570)
T 2z63_A          443 GLSSL---------------------------------------------------EVLKMAGNSFQENFLPDIFTELRN  471 (570)
T ss_dssp             TCTTC---------------------------------------------------CEEECTTCEEGGGEECSCCTTCTT
T ss_pred             cCCcC---------------------------------------------------cEEECcCCcCccccchhhhhcccC
Confidence            66665                                                   89999999998 678999999999


Q ss_pred             CCeEecCCCcCccCCCccccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCCcCcccCCCCCcC
Q 048351          670 LIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGKIPTGTQL  738 (850)
Q Consensus       670 L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~  738 (850)
                      |+.|+|++|++++..|..|+++++|++|++++|++++.+|..|..+++|++|++++|+++|.+|....+
T Consensus       472 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~  540 (570)
T 2z63_A          472 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL  540 (570)
T ss_dssp             CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHH
T ss_pred             CCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchHHH
Confidence            999999999999998999999999999999999999999999999999999999999999999875433

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=3.1e-48  Score=451.31  Aligned_cols=486  Identities=19%  Similarity=0.194  Sum_probs=345.0

Q ss_pred             cccccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCCcccc
Q 048351          114 TLNPALLKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAGNLDWI  193 (850)
Q Consensus       114 ~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~l  193 (850)
                      .+|+.+.  ++|++|+|++|.+++. .|..++++++|++|+|++|.+++..|.+|+++++|++|++++|++. ...+..+
T Consensus        19 ~ip~~~~--~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~   94 (549)
T 2z81_A           19 SIPSGLT--AAMKSLDLSFNKITYI-GHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS-SLSSSWF   94 (549)
T ss_dssp             SCCSCCC--TTCCEEECCSSCCCEE-CSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC-SCCHHHH
T ss_pred             cccccCC--CCccEEECcCCccCcc-ChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccC-ccCHHHh
Confidence            3555543  7899999999999975 6788999999999999999999988899999999999999999863 3344558


Q ss_pred             ccCCCccEEeCCCCCCCCCcchhhhhcCCCCCcEEEccCCCCCCCCCccccccccCCCCcccEEEccCCCCCCccchhhh
Q 048351          194 SQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLF  273 (850)
Q Consensus       194 ~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~  273 (850)
                      +++++|++|++++|.+++.+ .+..++.+++|++|++++|.+.+..+.   ..+..+ ++|++|++++|++++.      
T Consensus        95 ~~l~~L~~L~Ls~n~l~~~~-~~~~~~~l~~L~~L~L~~n~~~~~~~~---~~~~~l-~~L~~L~L~~n~l~~~------  163 (549)
T 2z81_A           95 GPLSSLKYLNLMGNPYQTLG-VTSLFPNLTNLQTLRIGNVETFSEIRR---IDFAGL-TSLNELEIKALSLRNY------  163 (549)
T ss_dssp             TTCTTCCEEECTTCCCSSSC-SSCSCTTCTTCCEEEEEESSSCCEECT---TTTTTC-CEEEEEEEEETTCCEE------
T ss_pred             ccCCCCcEEECCCCcccccc-hhhhhhccCCccEEECCCCccccccCH---hhhhcc-cccCeeeccCCccccc------
Confidence            89999999999999988642 345678888899999988874433321   344555 8888888888888876      


Q ss_pred             cCCCCCCCCCCCCCCcEEEccCCcCCcccchh-hhcCCCCcEEEccCCccccccccccccccccccCCCCCChhccCCCC
Q 048351          274 NVSSIPDAPGPMISLRTLTLSDNELDGEIPKF-FQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKH  352 (850)
Q Consensus       274 ~l~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~~~l~~~~p~~l~~l~~  352 (850)
                          .|..++.+++|++|++++|.+.. +|.. +..+++|++|++++|++++.....              ......+++
T Consensus       164 ----~~~~l~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--------------~~~~~~~~~  224 (549)
T 2z81_A          164 ----QSQSLKSIRDIHHLTLHLSESAF-LLEIFADILSSVRYLELRDTNLARFQFSP--------------LPVDEVSSP  224 (549)
T ss_dssp             ----CTTTTTTCSEEEEEEEECSBSTT-HHHHHHHSTTTBSEEEEESCBCTTCCCCC--------------CSSCCCCCC
T ss_pred             ----ChhhhhccccCceEecccCcccc-cchhhHhhcccccEEEccCCccccccccc--------------cchhhhhhc
Confidence                44557778888888888888764 4443 456888888888888877642110              001233556


Q ss_pred             CCEEEccCCcCCCCCchhHhhcCcCCCEEecccCcCcccCChhhhhhccCCcCEEEccCCcCcccCCCCCCCCcEEEccC
Q 048351          353 FSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSLPSNAFYIDLSK  432 (850)
Q Consensus       353 L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~L~~L~Ls~  432 (850)
                      |+.|++++|.+++..+..+....                      ... .+++.+++++|.+.+.........       
T Consensus       225 L~~L~l~~n~l~~~~~~~l~~~~----------------------~~~-~~L~~l~l~~~~~~~~~~~~~~~~-------  274 (549)
T 2z81_A          225 MKKLAFRGSVLTDESFNELLKLL----------------------RYI-LELSEVEFDDCTLNGLGDFNPSES-------  274 (549)
T ss_dssp             CCEEEEESCEEEHHHHHHHHGGG----------------------GGC-TTCCEEEEESCEEECCSCCCCCTT-------
T ss_pred             ccceeccccccchhHHHHHHHHh----------------------hhh-ccccccccccccccccccccccch-------
Confidence            66666666665554433332110                      001 333444444444333211000000       


Q ss_pred             CcCcCccccccccCCCCccEEEccCCCCCC-----CCCcccccCCCCCEEEcCCCcccccCCCcc-ccccCccEEeccCC
Q 048351          433 NKFSGPISFLCSFSGQNLVYLDLSSNLLSG-----KLPDCWLQFNMLRILNLANNNFSGKIPNSC-GYLQKMLTLSLHHN  506 (850)
Q Consensus       433 n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~-----~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~Ls~N  506 (850)
                             .  ....+++++.|++.++.+..     .++..+...++|+.|++++|.+. .+|..+ ..+++|++|++++|
T Consensus       275 -------~--~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N  344 (549)
T 2z81_A          275 -------D--VVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSEN  344 (549)
T ss_dssp             -------T--CCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSS
T ss_pred             -------h--hhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCC
Confidence                   0  00022456666666655432     12223344567888888888776 556554 46788888888888


Q ss_pred             ccccCCch---hhcCCCCcCeeccccccceeecch--hHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccC
Q 048351          507 NFSGELPS---LLKNFTHLRVVALEENSISGNIPA--WIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNI  581 (850)
Q Consensus       507 ~l~~~~p~---~l~~l~~L~~L~L~~N~l~~~ip~--~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  581 (850)
                      ++++.+|.   .+..+++|++|++++|+++ .++.  ..+..+++|++|++++|+++ .+|..+..+++|++|++++|++
T Consensus       345 ~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l  422 (549)
T 2z81_A          345 LMVEEYLKNSACKGAWPSLQTLVLSQNHLR-SMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGI  422 (549)
T ss_dssp             CCCHHHHHHHTCTTSSTTCCEEECTTSCCC-CHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCC
T ss_pred             ccccccccchhhhhccccCcEEEccCCccc-ccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCc
Confidence            88776543   3677888888888888887 4442  23346889999999999998 6788888899999999999998


Q ss_pred             cccCCccccCcccCccccccCccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCCh
Q 048351          582 SGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVP  661 (850)
Q Consensus       582 ~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p  661 (850)
                      ++ +|..+.                                                     +.|++|||++|++++.+ 
T Consensus       423 ~~-l~~~~~-----------------------------------------------------~~L~~L~Ls~N~l~~~~-  447 (549)
T 2z81_A          423 RV-VKTCIP-----------------------------------------------------QTLEVLDVSNNNLDSFS-  447 (549)
T ss_dssp             SC-CCTTSC-----------------------------------------------------TTCSEEECCSSCCSCCC-
T ss_pred             cc-ccchhc-----------------------------------------------------CCceEEECCCCChhhhc-
Confidence            73 332211                                                     13489999999999754 


Q ss_pred             hhhhccccCCeEecCCCcCccCCCccccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCCcCcccCCCC
Q 048351          662 EEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGKIPTG  735 (850)
Q Consensus       662 ~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~  735 (850)
                         +.+++|++|+|++|+++ .+|. .+.+++|++|||++|++++.+|..+..+++|++|++++|+++|.+|..
T Consensus       448 ---~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~  516 (549)
T 2z81_A          448 ---LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI  516 (549)
T ss_dssp             ---CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHHH
T ss_pred             ---ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCccH
Confidence               57899999999999999 5676 578999999999999999999999999999999999999999988743

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=6.2e-47  Score=442.59  Aligned_cols=498  Identities=19%  Similarity=0.144  Sum_probs=382.0

Q ss_pred             CCcccchhhhhccCCCCCCcccccccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCcccCCCC
Q 048351           93 GRVKVLDIQTRVMSGNASLRGTLNPALLKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLS  172 (850)
Q Consensus        93 ~~l~~l~l~~~~~~~~~~l~g~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~  172 (850)
                      ..++.|+++.      +.+++..+.+|.++++|++|||++|.+++. .|..++++++|++|+|++|.+++..|..|++++
T Consensus        28 ~~l~~L~Ls~------n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  100 (570)
T 2z63_A           28 FSTKNLDLSF------NPLRHLGSYSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS  100 (570)
T ss_dssp             SSCCEEECCS------CCCCEECTTTTTTCSSCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCT
T ss_pred             ccccEEEccC------CccCccChhHhhCCCCceEEECCCCcCCcc-CcccccCchhCCEEeCcCCcCCccCHhhhcCcc
Confidence            4567777654      567777777999999999999999999975 567899999999999999999988889999999


Q ss_pred             CCcEEEccCCCCCCCCCccccccCCCccEEeCCCCCCCCCcchhhhhcCCCCCcEEEccCCCCCCCCCccccccccCCCC
Q 048351          173 RLQYLSLGYNKLLRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSP  252 (850)
Q Consensus       173 ~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~  252 (850)
                      +|++|++++|++..... ..++++++|++|++++|.+++.. +|..++++++|++|++++|.+++.++    ..+..+ +
T Consensus       101 ~L~~L~L~~n~l~~l~~-~~~~~l~~L~~L~L~~n~l~~~~-lp~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l-~  173 (570)
T 2z63_A          101 SLQKLVAVETNLASLEN-FPIGHLKTLKELNVAHNLIQSFK-LPEYFSNLTNLEHLDLSSNKIQSIYC----TDLRVL-H  173 (570)
T ss_dssp             TCCEEECTTSCCCCSTT-CSCTTCTTCCEEECCSSCCCCCC-CCGGGGGCTTCCEEECTTSCCCEECG----GGGHHH-H
T ss_pred             ccccccccccccccCCC-ccccccccccEEecCCCccceec-ChhhhcccCCCCEEeCcCCccceecH----HHccch-h
Confidence            99999999998744332 24899999999999999998742 56789999999999999999988765    444444 6


Q ss_pred             cc----cEEEccCCCCCCccchhhhcCCCCCCCCCCCCCCcEEEccCCcCCc-ccchhhhcCCCCcEEEccCCccccccc
Q 048351          253 SL----ETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDG-EIPKFFQNMFKLEGLSLRGNSLEGVIS  327 (850)
Q Consensus       253 ~L----~~L~Ls~N~l~~~~~~~l~~l~~ip~~l~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~L~~N~l~~~~~  327 (850)
                      +|    +.|++++|.+++..          |..+... +|++|++++|.... .++..+..+++++.+.+....+.....
T Consensus       174 ~L~~~~~~L~l~~n~l~~~~----------~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~  242 (570)
T 2z63_A          174 QMPLLNLSLDLSLNPMNFIQ----------PGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGN  242 (570)
T ss_dssp             TCTTCCCEEECTTCCCCEEC----------TTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSS
T ss_pred             ccchhhhhcccCCCCceecC----------HHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchh
Confidence            66    89999999998753          3334444 89999999986543 567778889998887776443321100


Q ss_pred             cccccccccccCCCCCChhccCCCCCCEEEccCCcCCCCCchhHhhcCcCCCEEecccC-cCcccCChhhhhhccCCcCE
Q 048351          328 EHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHN-QMTGRFPNYISSMFILESPG  406 (850)
Q Consensus       328 ~~~~~~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~N-~l~~~~p~~~~~~~~~~L~~  406 (850)
                      .   ..     +..   ..+..++++                       .++.++++++ .+.+..|..+ ... .+++.
T Consensus       243 l---~~-----~~~---~~~~~l~~l-----------------------~l~~l~l~~~~~~~~~~~~~~-~~l-~~L~~  286 (570)
T 2z63_A          243 L---EK-----FDK---SALEGLCNL-----------------------TIEEFRLAYLDYYLDDIIDLF-NCL-TNVSS  286 (570)
T ss_dssp             C---EE-----CCT---TTTGGGGGS-----------------------EEEEEEEEETTEEESCSTTTT-GGG-TTCSE
T ss_pred             h---hh-----cch---hhhcccccc-----------------------chhhhhhhcchhhhhhchhhh-cCc-CcccE
Confidence            0   00     000   001111111                       2334444444 3444444444 222 45555


Q ss_pred             EEccCCcCcccCCCC--CCCCcEEEccCCcCcCccccccccCCCCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCcc
Q 048351          407 IDISSNHLEGPSPSL--PSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNF  484 (850)
Q Consensus       407 L~l~~N~l~~~~~~~--~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l  484 (850)
                      |++++|.+++..+..  . +|++|++++|.+.. ++.   ..+++|++|++++|.+.+..+.  ..+++|++|++++|.+
T Consensus       287 L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~-l~~---~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l  359 (570)
T 2z63_A          287 FSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQ-FPT---LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGL  359 (570)
T ss_dssp             EEEESCEECSCCBCCSCC-CCSEEEEESCBCSS-CCB---CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCC
T ss_pred             EEecCccchhhhhhhccC-CccEEeeccCcccc-cCc---ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCcc
Confidence            555555554322111  3 66677777776662 222   1447899999999998876665  7789999999999999


Q ss_pred             cccC--CCccccccCccEEeccCCccccCCchhhcCCCCcCeeccccccceeecchhHHhcCCCCCEEEccCCccccccC
Q 048351          485 SGKI--PNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIP  562 (850)
Q Consensus       485 ~~~~--p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p  562 (850)
                      ++..  |..+..+++|++|++++|.+.+..+. +..+++|++|++++|.+.+..|...+..+++|++|++++|.+.+..|
T Consensus       360 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  438 (570)
T 2z63_A          360 SFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN  438 (570)
T ss_dssp             BEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCT
T ss_pred             CccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccch
Confidence            8654  67788899999999999999865444 89999999999999999866664444579999999999999999999


Q ss_pred             cCcCCCCCcceeecccccCc-ccCCccccCcccCccccccCccccccccccCCCcccCccceEeeEEEEEecCccccccc
Q 048351          563 FQLCHLADIQILDLSLNNIS-GNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKN  641 (850)
Q Consensus       563 ~~l~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  641 (850)
                      ..+..+++|++|++++|+++ +.+|..+..+++|                                              
T Consensus       439 ~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L----------------------------------------------  472 (570)
T 2z63_A          439 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL----------------------------------------------  472 (570)
T ss_dssp             TTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC----------------------------------------------
T ss_pred             hhhhcCCcCcEEECcCCcCccccchhhhhcccCC----------------------------------------------
Confidence            99999999999999999998 5788777666655                                              


Q ss_pred             ccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCCCccccccCCCCeeeCCCCcCcccCcc
Q 048351          642 TLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPS  710 (850)
Q Consensus       642 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~  710 (850)
                           +.|+|++|++++..|..++.+++|+.|++++|++++.+|..|.++++|+.|++++|.+++..|.
T Consensus       473 -----~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  536 (570)
T 2z63_A          473 -----TFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  536 (570)
T ss_dssp             -----CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             -----CEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence                 8999999999999999999999999999999999998888899999999999999999988764

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=4e-46  Score=433.53  Aligned_cols=487  Identities=21%  Similarity=0.179  Sum_probs=365.2

Q ss_pred             CCEEeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCCccccccCCCccEEeC
Q 048351          125 LRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAGNLDWISQLFSLRYLDL  204 (850)
Q Consensus       125 L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~L  204 (850)
                      ..+.|.+++.++  .+|..+.  ++|++|+|++|.+++..|.+|+++++|++|++++|++. ...+..+.++++|++|++
T Consensus         7 ~~~c~~~~~~l~--~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L   81 (549)
T 2z81_A            7 SGVCDGRSRSFT--SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN-TIEGDAFYSLGSLEHLDL   81 (549)
T ss_dssp             TSEEECTTSCCS--SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEEC
T ss_pred             CceEECCCCccc--cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcC-ccChhhccccccCCEEEC
Confidence            344688899998  5787665  89999999999999888999999999999999999863 334456889999999999


Q ss_pred             CCCCCCCCcchhhhhcCCCCCcEEEccCCCCCCCC-CccccccccCCCCcccEEEccCCCCCCccchhhhcCCCCCCCCC
Q 048351          205 SSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQP-TIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPG  283 (850)
Q Consensus       205 s~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~ip~~l~  283 (850)
                      ++|++++.  .+..++.+++|++|++++|.+++.. +    ..+.++ ++|++|++++|++.+.+|+         ..++
T Consensus        82 s~n~l~~~--~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~~l-~~L~~L~L~~n~~~~~~~~---------~~~~  145 (549)
T 2z81_A           82 SDNHLSSL--SSSWFGPLSSLKYLNLMGNPYQTLGVT----SLFPNL-TNLQTLRIGNVETFSEIRR---------IDFA  145 (549)
T ss_dssp             TTSCCCSC--CHHHHTTCTTCCEEECTTCCCSSSCSS----CSCTTC-TTCCEEEEEESSSCCEECT---------TTTT
T ss_pred             CCCccCcc--CHHHhccCCCCcEEECCCCcccccchh----hhhhcc-CCccEEECCCCccccccCH---------hhhh
Confidence            99999886  3456889999999999999887642 2    344555 8888888888885554332         3577


Q ss_pred             CCCCCcEEEccCCcCCcccchhhhcCCCCcEEEccCCccccccccccccccccccCCCCCChhccCCCCCCEEEccCCcC
Q 048351          284 PMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAGI  363 (850)
Q Consensus       284 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l  363 (850)
                      .+++|++|++++|++++..|..++.+++|++|++++|.+......                 .+..+++|+.|++++|.+
T Consensus       146 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-----------------~~~~l~~L~~L~L~~n~l  208 (549)
T 2z81_A          146 GLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEI-----------------FADILSSVRYLELRDTNL  208 (549)
T ss_dssp             TCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHH-----------------HHHSTTTBSEEEEESCBC
T ss_pred             cccccCeeeccCCcccccChhhhhccccCceEecccCcccccchh-----------------hHhhcccccEEEccCCcc
Confidence            788888888888888888888888888888888888876532111                 134567777777777777


Q ss_pred             CCCC--chhHhhcCcCCCEEecccCcCcccCChhhhhhccCCcCEEEccCCcCcccCCCCCCCCcEEEccCCcCcCcccc
Q 048351          364 SDSI--PDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSLPSNAFYIDLSKNKFSGPISF  441 (850)
Q Consensus       364 ~~~~--~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~  441 (850)
                      ++..  +..+....++|+.|++++|.+++..+..+....                                         
T Consensus       209 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~-----------------------------------------  247 (549)
T 2z81_A          209 ARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLL-----------------------------------------  247 (549)
T ss_dssp             TTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGG-----------------------------------------
T ss_pred             ccccccccchhhhhhcccceeccccccchhHHHHHHHHh-----------------------------------------
Confidence            6532  222222334566666666655544443331110                                         


Q ss_pred             ccccCCCCccEEEccCCCCCCC------CCcccccCCCCCEEEcCCCccccc-----CCCccccccCccEEeccCCcccc
Q 048351          442 LCSFSGQNLVYLDLSSNLLSGK------LPDCWLQFNMLRILNLANNNFSGK-----IPNSCGYLQKMLTLSLHHNNFSG  510 (850)
Q Consensus       442 ~~~~~~~~L~~L~Ls~n~l~~~------~p~~~~~l~~L~~L~Ls~N~l~~~-----~p~~~~~l~~L~~L~Ls~N~l~~  510 (850)
                         ..+++|+.+++++|.+.+.      ....+..+++|+.|++.++.+...     ++..+...++|+.|++++|++. 
T Consensus       248 ---~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-  323 (549)
T 2z81_A          248 ---RYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-  323 (549)
T ss_dssp             ---GGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-
T ss_pred             ---hhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-
Confidence               0224566666666655432      123456688999999999877532     1222334578999999999998 


Q ss_pred             CCchhh-cCCCCcCeeccccccceeecchh---HHhcCCCCCEEEccCCccccccC--cCcCCCCCcceeecccccCccc
Q 048351          511 ELPSLL-KNFTHLRVVALEENSISGNIPAW---IGESLLNLVVLDLRSNRFYGKIP--FQLCHLADIQILDLSLNNISGN  584 (850)
Q Consensus       511 ~~p~~l-~~l~~L~~L~L~~N~l~~~ip~~---~~~~l~~L~~L~L~~N~l~~~~p--~~l~~l~~L~~L~Ls~N~l~~~  584 (850)
                      .+|..+ ..+++|++|++++|++++.+|..   +. .+++|++|++++|++++..+  ..+..+++|++|++++|+++ .
T Consensus       324 ~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~  401 (549)
T 2z81_A          324 LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKG-AWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-P  401 (549)
T ss_dssp             CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTT-SSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-C
T ss_pred             cCCHHHHhcCccccEEEccCCccccccccchhhhh-ccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-c
Confidence            677665 67999999999999999877643   33 68999999999999986543  45888999999999999998 5


Q ss_pred             CCccccCcccCccccccCccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhh
Q 048351          585 IPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEI  664 (850)
Q Consensus       585 ~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l  664 (850)
                      +|..+..+++|                                                   ++|++++|++++ +|..+
T Consensus       402 lp~~~~~~~~L---------------------------------------------------~~L~Ls~N~l~~-l~~~~  429 (549)
T 2z81_A          402 MPDSCQWPEKM---------------------------------------------------RFLNLSSTGIRV-VKTCI  429 (549)
T ss_dssp             CCSCCCCCTTC---------------------------------------------------CEEECTTSCCSC-CCTTS
T ss_pred             CChhhcccccc---------------------------------------------------cEEECCCCCccc-ccchh
Confidence            67666555444                                                   899999999984 45443


Q ss_pred             hccccCCeEecCCCcCccCCCccccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCCcCcccCCCC-CcCCCcCc
Q 048351          665 MDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGKIPTG-TQLQSFNA  743 (850)
Q Consensus       665 ~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~  743 (850)
                      .  ++|++|+|++|++++.+    ..+++|++|||++|+++ .+|. ...+++|++||+++|++++.+|.. ..+..+..
T Consensus       430 ~--~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  501 (549)
T 2z81_A          430 P--QTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQK  501 (549)
T ss_dssp             C--TTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCE
T ss_pred             c--CCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCE
Confidence            2  68999999999999753    57899999999999999 6776 567999999999999999887763 56667777


Q ss_pred             cccCCCCCCCCCC
Q 048351          744 SVYDGNPELCGLP  756 (850)
Q Consensus       744 ~~~~gN~~lc~~~  756 (850)
                      ..+.|||+.|+|+
T Consensus       502 L~l~~N~~~~~~~  514 (549)
T 2z81_A          502 IWLHTNPWDCSCP  514 (549)
T ss_dssp             EECCSSCBCCCHH
T ss_pred             EEecCCCccCCCc
Confidence            7899999999886

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=3.2e-45  Score=433.94  Aligned_cols=551  Identities=21%  Similarity=0.158  Sum_probs=381.3

Q ss_pred             CCCCEEeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCCccccccCCCccEE
Q 048351          123 HYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAGNLDWISQLFSLRYL  202 (850)
Q Consensus       123 ~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L  202 (850)
                      +++++|||++|+|+++ .|..|.++++|++|+|++|++++..|.+|+++++|++|+|++|++. ..++..|.++++|++|
T Consensus        52 ~~~~~LdLs~N~i~~l-~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~f~~L~~L~~L  129 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKL  129 (635)
T ss_dssp             TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECGGGGTTCTTCCEE
T ss_pred             cCCCEEEeeCCCCCCC-CHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC-CCCHHHhcCCCCCCEE
Confidence            4789999999999864 4567899999999999999999877888999999999999999863 3344568899999999


Q ss_pred             eCCCCCCCCCcchhhhhcCCCCCcEEEccCCCCCCCCCccccccccCCCCcccEEEccCCCCCCccchhhhcCCCCCCCC
Q 048351          203 DLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAP  282 (850)
Q Consensus       203 ~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~ip~~l  282 (850)
                      ++++|++++++  +..++++++|++|++++|.+++....   ..+..+ ++|++|++++|++++..+..+..+...+   
T Consensus       130 ~Ls~N~l~~l~--~~~~~~L~~L~~L~Ls~N~l~~~~~~---~~~~~l-~~L~~L~L~~N~l~~~~~~~l~~L~~l~---  200 (635)
T 4g8a_A          130 VAVETNLASLE--NFPIGHLKTLKELNVAHNLIQSFKLP---EYFSNL-TNLEHLDLSSNKIQSIYCTDLRVLHQMP---  200 (635)
T ss_dssp             ECTTSCCCCST--TCCCTTCTTCCEEECCSSCCCCCCCC---GGGGGC-TTCCEEECCSSCCCEECGGGGHHHHTCT---
T ss_pred             ECCCCcCCCCC--hhhhhcCcccCeeccccCccccCCCc---hhhccc-hhhhhhcccCccccccccccccchhhhh---
Confidence            99999998863  24588899999999999988764320   334444 8899999999998887666554433221   


Q ss_pred             CCCCCCcEEEccCCcCCcccchhhhcCCCCcEEEccCCccccccccccccccccccCCCCCChhccCCCCCCEEEccCCc
Q 048351          283 GPMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAG  362 (850)
Q Consensus       283 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~  362 (850)
                         ..+..++++.|.++...+.. .....++.+++.+|.....+...                .+..+..++...+..+.
T Consensus       201 ---~~~~~~~ls~n~l~~i~~~~-~~~~~~~~l~l~~n~~~~~~~~~----------------~~~~l~~l~~~~l~~~~  260 (635)
T 4g8a_A          201 ---LLNLSLDLSLNPMNFIQPGA-FKEIRLHKLTLRNNFDSLNVMKT----------------CIQGLAGLEVHRLVLGE  260 (635)
T ss_dssp             ---TCCCEEECTTCCCCEECTTT-TTTCEEEEEEEESCCSSHHHHHH----------------HHHTTTTCEEEEEEEEC
T ss_pred             ---hhhhhhhcccCcccccCccc-ccchhhhhhhhhcccccccccch----------------hhcCCcccccccccccc
Confidence               13457888888888544443 34446677888877655433322                23444555544443222


Q ss_pred             CC------CCCchhHhhcCcCCCEEecccCcCcc---cCChhhhhhccCCcCEEEccCCcCcccCCC-CCCCCcEEEccC
Q 048351          363 IS------DSIPDWFSDTSHKLADLNFSHNQMTG---RFPNYISSMFILESPGIDISSNHLEGPSPS-LPSNAFYIDLSK  432 (850)
Q Consensus       363 l~------~~~~~~~~~~~~~L~~L~Ls~N~l~~---~~p~~~~~~~~~~L~~L~l~~N~l~~~~~~-~~~~L~~L~Ls~  432 (850)
                      ..      ......+.. ...+....+..+....   ..+..+ ... ..+..+++..+.+.+..+. ....++.|++.+
T Consensus       261 ~~~~~~l~~~~~~~~~~-~~~l~~~~l~~~~~~~~~~~~~~~~-~~~-~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~  337 (635)
T 4g8a_A          261 FRNEGNLEKFDKSALEG-LCNLTIEEFRLAYLDYYLDGIIDLF-NCL-TNVSSFSLVSVTIERVKDFSYNFGWQHLELVN  337 (635)
T ss_dssp             CTTSCCCSCCCTTTTGG-GGGSEEEEEEEECCCSCEEECTTTT-GGG-TTCSEEEEESCEEEECGGGGSCCCCSEEEEES
T ss_pred             ccccccccccccccccc-ccchhhhhhhhhhhcccccchhhhh-hhh-cccccccccccccccccccccchhhhhhhccc
Confidence            11      111111211 1234444443332221   112222 111 5666677777666554332 245677777777


Q ss_pred             CcCcCccccccccCCCCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCcccc--cCCCccccccCccEEeccCCcccc
Q 048351          433 NKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSG--KIPNSCGYLQKMLTLSLHHNNFSG  510 (850)
Q Consensus       433 n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~  510 (850)
                      |.+.+....    .+..|+.+++..|.+....  ....+++|+.|++++|.+..  ..+..+..+.+|+.++++.|....
T Consensus       338 ~~~~~~~~~----~l~~L~~l~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~  411 (635)
T 4g8a_A          338 CKFGQFPTL----KLKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT  411 (635)
T ss_dssp             CEESSCCCC----BCTTCCEEEEESCCSCCBC--CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE
T ss_pred             ccccCcCcc----cchhhhhcccccccCCCCc--ccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc
Confidence            776654332    2367888888888766433  34567888888888887753  345556667788888888888763


Q ss_pred             CCchhhcCCCCcCeeccccccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccCc-ccCCccc
Q 048351          511 ELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNIS-GNIPKCF  589 (850)
Q Consensus       511 ~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~~~p~~~  589 (850)
                       .+..+..+++|+.+++..|......+...+..+++++.++++.|.+.+..+..+..++.|+.|++++|++. +..|..|
T Consensus       412 -~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~  490 (635)
T 4g8a_A          412 -MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF  490 (635)
T ss_dssp             -ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCC
T ss_pred             -ccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhh
Confidence             45567778888888888888776666666667888888888888888888888888888888888888754 3456666


Q ss_pred             cCcccCccccccCccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhcccc
Q 048351          590 NNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVG  669 (850)
Q Consensus       590 ~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~  669 (850)
                      ..+++|                                                   ++|||++|++++.+|..|+++++
T Consensus       491 ~~l~~L---------------------------------------------------~~L~Ls~N~L~~l~~~~f~~l~~  519 (635)
T 4g8a_A          491 TELRNL---------------------------------------------------TFLDLSQCQLEQLSPTAFNSLSS  519 (635)
T ss_dssp             TTCTTC---------------------------------------------------CEEECTTSCCCEECTTTTTTCTT
T ss_pred             hhcccc---------------------------------------------------CEEECCCCccCCcChHHHcCCCC
Confidence            555544                                                   88999999999888999999999


Q ss_pred             CCeEecCCCcCccCCCccccccCCCCeeeCCCCcCcccCcccccCC-CCCCEEEcCCCcCcccCCCCCcCCCcCccccCC
Q 048351          670 LIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQV-NRLSVMDLSHNNLSGKIPTGTQLQSFNASVYDG  748 (850)
Q Consensus       670 L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~g  748 (850)
                      |++|+|++|+|++.+|..|+++++|++|||++|+|++.+|..|..+ ++|++|++++|++++..    .+..|..+ +..
T Consensus       520 L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C----~~~~~~~w-l~~  594 (635)
T 4g8a_A          520 LQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC----EHQSFLQW-IKD  594 (635)
T ss_dssp             CCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSG----GGHHHHHH-HHH
T ss_pred             CCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccC----CcHHHHHH-HHh
Confidence            9999999999998888889999999999999999999999999888 68999999999998753    33333221 111


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCC
Q 048351          749 NPELCGLPLPSKCWDEESAPGP  770 (850)
Q Consensus       749 N~~lc~~~~~~~c~~~~~~~~~  770 (850)
                      +...-.......|..|+...+.
T Consensus       595 ~~~~~~~~~~~~C~~P~~~~g~  616 (635)
T 4g8a_A          595 QRQLLVEVERMECATPSDKQGM  616 (635)
T ss_dssp             TTTTBSCGGGCBBCSSTTTTTC
T ss_pred             CCCccCCCCCceeCCchHHCCC
Confidence            1111111223468777776665

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=2.4e-46  Score=432.15  Aligned_cols=204  Identities=16%  Similarity=0.200  Sum_probs=124.2

Q ss_pred             CCCccEEEccCCCCCCCCC-cccccC---CCCCEEEcCCCcccccCCCccccccCccEEeccCCccccCCchhhcCCCCc
Q 048351          447 GQNLVYLDLSSNLLSGKLP-DCWLQF---NMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHL  522 (850)
Q Consensus       447 ~~~L~~L~Ls~n~l~~~~p-~~~~~l---~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L  522 (850)
                      +++|+.+++++|.+  .+| ..+..+   .+|+.|++++|.+.+..  .+..+++|++|++++|++++.+|..+..+++|
T Consensus       275 l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  350 (520)
T 2z7x_B          275 LKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTEL  350 (520)
T ss_dssp             CCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSC
T ss_pred             CceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCC
Confidence            35677777777776  344 334333   55777777777665321  12456666666666666666566666666666


Q ss_pred             Ceecccccccee--ecchhHHhcCCCCCEEEccCCccccccCcC-cCCCCCcceeecccccCcccCCccccCcccCcccc
Q 048351          523 RVVALEENSISG--NIPAWIGESLLNLVVLDLRSNRFYGKIPFQ-LCHLADIQILDLSLNNISGNIPKCFNNFTAMTQER  599 (850)
Q Consensus       523 ~~L~L~~N~l~~--~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~  599 (850)
                      ++|++++|++++  .+|..+. .+++|++|++++|.+++.+|.. +..+++|                            
T Consensus       351 ~~L~L~~N~l~~l~~~~~~~~-~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L----------------------------  401 (520)
T 2z7x_B          351 ETLILQMNQLKELSKIAEMTT-QMKSLQQLDISQNSVSYDEKKGDCSWTKSL----------------------------  401 (520)
T ss_dssp             CEEECCSSCCCBHHHHHHHHT-TCTTCCEEECCSSCCBCCGGGCSCCCCTTC----------------------------
T ss_pred             CEEEccCCccCccccchHHHh-hCCCCCEEECCCCcCCcccccchhccCccC----------------------------
Confidence            666666666653  2333333 3455555555555544423321 3333333                            


Q ss_pred             ccCccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCc
Q 048351          600 SYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNN  679 (850)
Q Consensus       600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~  679 (850)
                                                                     +.|++++|++++.+|..+.  ++|+.|+|++|+
T Consensus       402 -----------------------------------------------~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~  432 (520)
T 2z7x_B          402 -----------------------------------------------LSLNMSSNILTDTIFRCLP--PRIKVLDLHSNK  432 (520)
T ss_dssp             -----------------------------------------------CEEECCSSCCCGGGGGSCC--TTCCEEECCSSC
T ss_pred             -----------------------------------------------CEEECcCCCCCcchhhhhc--ccCCEEECCCCc
Confidence                                                           5566666666555555443  567778888887


Q ss_pred             CccCCCccccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCCcCcccCC
Q 048351          680 LTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGKIP  733 (850)
Q Consensus       680 l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP  733 (850)
                      ++ .+|..+..+++|++|+|++|++++..+..+..+++|++|++++|+++|.+|
T Consensus       433 l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~  485 (520)
T 2z7x_B          433 IK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  485 (520)
T ss_dssp             CC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             cc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCC
Confidence            77 567777788888888888888884333347888888888888888887654

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=1.7e-46  Score=441.72  Aligned_cols=461  Identities=19%  Similarity=0.226  Sum_probs=356.9

Q ss_pred             CCCCEEeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCC------C------CCCcccCCCCCCcEEEccCCCCCCCCCc
Q 048351          123 HYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFS------G------PIPPLLGNLSRLQYLSLGYNKLLRAGNL  190 (850)
Q Consensus       123 ~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~------~------~~p~~l~~l~~L~~L~Ls~N~l~~~~~~  190 (850)
                      .+++.|+|++|.++|. +|..++++++|++|+|++|.+.      |      .+|...                      
T Consensus        81 ~~V~~L~L~~~~l~g~-lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~----------------------  137 (636)
T 4eco_A           81 GRVTGLSLEGFGASGR-VPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ----------------------  137 (636)
T ss_dssp             CCEEEEECTTSCCEEE-ECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH----------------------
T ss_pred             CCEEEEEecCcccCCc-CChHHhcCccceEEECcCCccccCCccccccccccCchHHH----------------------
Confidence            4678899999999885 8888899999999999988762      2      222222                      


Q ss_pred             cccccCCCccEEeCCCCCCCCCcchhhhhcC-CCCCcEEEccCCCCCCCCCccccccccCCCCcccEEEc--cCCCCCCc
Q 048351          191 DWISQLFSLRYLDLSSCNLSKSTDWLQEVDK-IPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGL--SYNNLTAS  267 (850)
Q Consensus       191 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~-l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L--s~N~l~~~  267 (850)
                           +..|+ +++++|.+.+.  .+..+.. +..+..+++....+.....           ..++.+.+  ..|++++ 
T Consensus       138 -----~~~l~-l~l~~~~l~~~--~~~~~~~~~~~l~~~~l~~~~~~~~~~-----------~~l~~l~l~~~~n~l~~-  197 (636)
T 4eco_A          138 -----KQKMR-MHYQKTFVDYD--PREDFSDLIKDCINSDPQQKSIKKSSR-----------ITLKDTQIGQLSNNITF-  197 (636)
T ss_dssp             -----HHHHH-THHHHHHTCCC--GGGGSCHHHHHHHHHCTTSCCCCCCCC-----------CCCCTTTTTCCSCEEEE-
T ss_pred             -----HHHHH-hhHHHhhhccC--chhhHHHHHHHHhhcCccccccccccc-----------cchhhhhhccccCCCcc-
Confidence                 23333 44444444332  1222221 1112222222211111100           22222223  3567776 


Q ss_pred             cchhhhcCCCCCCCCCCCCCCcEEEccCCcCCcc-----------------cchhhh--cCCCCcEEEccCCcccccccc
Q 048351          268 IYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGE-----------------IPKFFQ--NMFKLEGLSLRGNSLEGVISE  328 (850)
Q Consensus       268 ~~~~l~~l~~ip~~l~~l~~L~~L~Ls~N~l~~~-----------------~p~~l~--~l~~L~~L~L~~N~l~~~~~~  328 (850)
                      +|.          .++++++|++|+|++|.+++.                 +|..++  ++++|++|++++|.+.+.+|.
T Consensus       198 ip~----------~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~  267 (636)
T 4eco_A          198 VSK----------AVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPT  267 (636)
T ss_dssp             ECG----------GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCT
T ss_pred             CCH----------HHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChH
Confidence            444          467788999999999999986                 999988  999999999999998876554


Q ss_pred             ccccccccccCCCCCChhccCCCCCCEEEccCCc-CCC-CCchhHhhc-----CcCCCEEecccCcCcccCCh--hhhhh
Q 048351          329 HFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAG-ISD-SIPDWFSDT-----SHKLADLNFSHNQMTGRFPN--YISSM  399 (850)
Q Consensus       329 ~~~~~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~-~~~~~~~~~-----~~~L~~L~Ls~N~l~~~~p~--~~~~~  399 (850)
                                       .+.++++|++|++++|+ +++ .+|..+...     +++|++|++++|+++ .+|.  .+ . 
T Consensus       268 -----------------~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l-~-  327 (636)
T 4eco_A          268 -----------------FLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSL-Q-  327 (636)
T ss_dssp             -----------------TTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHH-T-
T ss_pred             -----------------HHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhh-c-
Confidence                             48999999999999998 998 899888764     368999999999999 6776  55 1 


Q ss_pred             ccCCcCEEEccCCcCcccCCCCCCCCcEEEccCCcCcCccccccccCCCCccEEEccCCCCCCCCCcccccCCCCCEEEc
Q 048351          400 FILESPGIDISSNHLEGPSPSLPSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNL  479 (850)
Q Consensus       400 ~~~~L~~L~l~~N~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L  479 (850)
                                                                    .+++|++|++++|.++|.+| .+..+++|++|++
T Consensus       328 ----------------------------------------------~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L  360 (636)
T 4eco_A          328 ----------------------------------------------KMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNL  360 (636)
T ss_dssp             ----------------------------------------------TCTTCCEEECCSCCCEEECC-CCEEEEEESEEEC
T ss_pred             ----------------------------------------------cCCCCCEEeCcCCcCccchh-hhCCCCCCCEEEC
Confidence                                                          22689999999999998899 8999999999999


Q ss_pred             CCCcccccCCCccccccC-ccEEeccCCccccCCchhhcCCC--CcCeeccccccceeecchhHHh------cCCCCCEE
Q 048351          480 ANNNFSGKIPNSCGYLQK-MLTLSLHHNNFSGELPSLLKNFT--HLRVVALEENSISGNIPAWIGE------SLLNLVVL  550 (850)
Q Consensus       480 s~N~l~~~~p~~~~~l~~-L~~L~Ls~N~l~~~~p~~l~~l~--~L~~L~L~~N~l~~~ip~~~~~------~l~~L~~L  550 (850)
                      ++|.++ .+|..+..+++ |++|++++|+++ .+|..+..++  +|++|++++|++++.+|..+..      .+++|++|
T Consensus       361 ~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L  438 (636)
T 4eco_A          361 AYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSI  438 (636)
T ss_dssp             CSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEE
T ss_pred             CCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEE
Confidence            999999 88999999999 999999999999 7888887765  8999999999999888876541      36799999


Q ss_pred             EccCCccccccCcCcCCCCCcceeecccccCcccCCccccC-cccCccccccCccccccccccCCCcccCccceEeeEEE
Q 048351          551 DLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNN-FTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVL  629 (850)
Q Consensus       551 ~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~-l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  629 (850)
                      ++++|.+++..+..+..+++|++|++++|+++ .+|..... ...                                   
T Consensus       439 ~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~-----------------------------------  482 (636)
T 4eco_A          439 NLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENE-----------------------------------  482 (636)
T ss_dssp             ECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTE-----------------------------------
T ss_pred             ECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccc-----------------------------------
Confidence            99999999544444567999999999999999 66654321 110                                   


Q ss_pred             EEecCcccccccccccccEEEcCCCCCCCCChhhhh--ccccCCeEecCCCcCccCCCccccccCCCCeeeC------CC
Q 048351          630 LTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIM--DLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDL------SR  701 (850)
Q Consensus       630 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~--~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~L------s~  701 (850)
                               ....++.|+.|+|++|+++ .+|..+.  .+++|+.|+|++|++++ +|..+.++++|+.|+|      ++
T Consensus       483 ---------~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~  551 (636)
T 4eco_A          483 ---------NFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQG  551 (636)
T ss_dssp             ---------ECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTC
T ss_pred             ---------cccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCccccc
Confidence                     0123446699999999999 7888887  99999999999999998 8999999999999999      56


Q ss_pred             CcCcccCcccccCCCCCCEEEcCCCcCcccCCCCCcCCCcCccccCCCCCCCC
Q 048351          702 NQFSGGIPSSLSQVNRLSVMDLSHNNLSGKIPTGTQLQSFNASVYDGNPELCG  754 (850)
Q Consensus       702 N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~lc~  754 (850)
                      |++.+.+|..+..+++|++|++++|++ +.||... ...+....+.+|+..|-
T Consensus       552 N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~-~~~L~~L~Ls~N~l~~~  602 (636)
T 4eco_A          552 NRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKI-TPNISVLDIKDNPNISI  602 (636)
T ss_dssp             CBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCC-CTTCCEEECCSCTTCEE
T ss_pred             CcccccChHHHhcCCCCCEEECCCCcC-CccCHhH-hCcCCEEECcCCCCccc
Confidence            889999999999999999999999999 7899763 36677777999998873

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.1e-44  Score=418.28  Aligned_cols=455  Identities=20%  Similarity=0.191  Sum_probs=334.2

Q ss_pred             CCCcccccccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCcccCCCCCCcEEEccCCCCCCCC
Q 048351          109 ASLRGTLNPALLKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAG  188 (850)
Q Consensus       109 ~~l~g~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~  188 (850)
                      +.++ .+|..+.  ++|++|+|++|.+++. .|..+.++++|++|+|++|.+++..|..|+++++|++|+|++|++..  
T Consensus        10 n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--   83 (520)
T 2z7x_B           10 NGLI-HVPKDLS--QKTTILNISQNYISEL-WTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVK--   83 (520)
T ss_dssp             SCCS-SCCCSCC--TTCSEEECCSSCCCCC-CHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCE--
T ss_pred             CCcc-ccccccc--ccccEEECCCCccccc-ChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceee--
Confidence            4555 4676665  8999999999999875 56788899999999999999998888899999999999999998642  


Q ss_pred             CccccccCCCccEEeCCCCCCCCCcchhhhhcCCCCCcEEEccCCCCCCCCCccccccccCCCCcc--cEEEccCCCC--
Q 048351          189 NLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSL--ETLGLSYNNL--  264 (850)
Q Consensus       189 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L--~~L~Ls~N~l--  264 (850)
                       .+.. .+++|++|++++|.+++.+ +|..++.+++|++|++++|.+++.       .+..+ ++|  ++|++++|++  
T Consensus        84 -lp~~-~l~~L~~L~L~~N~l~~~~-~p~~~~~l~~L~~L~L~~n~l~~~-------~~~~l-~~L~L~~L~l~~n~l~~  152 (520)
T 2z7x_B           84 -ISCH-PTVNLKHLDLSFNAFDALP-ICKEFGNMSQLKFLGLSTTHLEKS-------SVLPI-AHLNISKVLLVLGETYG  152 (520)
T ss_dssp             -EECC-CCCCCSEEECCSSCCSSCC-CCGGGGGCTTCCEEEEEESSCCGG-------GGGGG-TTSCEEEEEEEECTTTT
T ss_pred             -cCcc-ccCCccEEeccCCcccccc-chhhhccCCcceEEEecCcccchh-------hcccc-ccceeeEEEeecccccc
Confidence             2222 7889999999999988742 457888899999999999988752       23333 666  9999999988  


Q ss_pred             CCccchhhhcCCCCCCCCCCCC-CCcEEEccCCcCCcccch-hhhcCCCCcEEEccCCc-------cccccccccccccc
Q 048351          265 TASIYPWLFNVSSIPDAPGPMI-SLRTLTLSDNELDGEIPK-FFQNMFKLEGLSLRGNS-------LEGVISEHFFSNFS  335 (850)
Q Consensus       265 ~~~~~~~l~~l~~ip~~l~~l~-~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~L~~N~-------l~~~~~~~~~~~l~  335 (850)
                      .+..|          ..+..+. ....+++++|.+.+.++. .+.++++|+.|++++|.       +.+.++        
T Consensus       153 ~~~~~----------~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~--------  214 (520)
T 2z7x_B          153 EKEDP----------EGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA--------  214 (520)
T ss_dssp             SSCCT----------TTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH--------
T ss_pred             ccccc----------ccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh--------
Confidence            55533          3344443 344678888888775554 56778888888888886       554443        


Q ss_pred             cccCCCCCChhccCCCCCCEEEccCCcCCCCCchhHhh--cCcCCCEEecccCcCcccCChhhhhhccCCcCEEEccCCc
Q 048351          336 YLKMGPHFPKWLQTQKHFSVLDISSAGISDSIPDWFSD--TSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNH  413 (850)
Q Consensus       336 ~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~--~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~l~~N~  413 (850)
                                .+..+++|+.|++++|.+++..+..+..  ..++|++|++++|+++|.+|..+....             
T Consensus       215 ----------~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~-------------  271 (520)
T 2z7x_B          215 ----------KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYS-------------  271 (520)
T ss_dssp             ----------GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCC-------------
T ss_pred             ----------hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcc-------------
Confidence                      2677788888888887776543332221  123677777777777766665430000             


Q ss_pred             CcccCCCCCCCCcEEEccCCcCcCcccc--ccc-cCCCCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCCC
Q 048351          414 LEGPSPSLPSNAFYIDLSKNKFSGPISF--LCS-FSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPN  490 (850)
Q Consensus       414 l~~~~~~~~~~L~~L~Ls~n~l~~~~~~--~~~-~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~  490 (850)
                           ...++.|+.+++++|.+  .+|.  ... ....+|+.|++++|.+.+..  .+..+++|++|++++|++++.+|.
T Consensus       272 -----~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~  342 (520)
T 2z7x_B          272 -----GTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFE  342 (520)
T ss_dssp             -----SCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTT
T ss_pred             -----cccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhh
Confidence                 02245566777777776  2221  110 01157999999999987432  236889999999999999998999


Q ss_pred             ccccccCccEEeccCCcccc--CCchhhcCCCCcCeeccccccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCC
Q 048351          491 SCGYLQKMLTLSLHHNNFSG--ELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHL  568 (850)
Q Consensus       491 ~~~~l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l  568 (850)
                      .++.+++|++|++++|++++  .+|..+..+++|++|++++|++++.+|...+..+++|++|++++|++++.+|..+.  
T Consensus       343 ~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--  420 (520)
T 2z7x_B          343 NCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--  420 (520)
T ss_dssp             TCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--
T ss_pred             hhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--
Confidence            99999999999999999996  56788999999999999999999769987555789999999999999876655432  


Q ss_pred             CCcceeecccccCcccCCccccCcccCccccccCccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccE
Q 048351          569 ADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKS  648 (850)
Q Consensus       569 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~  648 (850)
                      ++|                                                                           +.
T Consensus       421 ~~L---------------------------------------------------------------------------~~  425 (520)
T 2z7x_B          421 PRI---------------------------------------------------------------------------KV  425 (520)
T ss_dssp             TTC---------------------------------------------------------------------------CE
T ss_pred             ccC---------------------------------------------------------------------------CE
Confidence            333                                                                           45


Q ss_pred             EEcCCCCCCCCChhhhhccccCCeEecCCCcCccCCCc-cccccCCCCeeeCCCCcCcccCc
Q 048351          649 VDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITP-KIGQLQSLDFLDLSRNQFSGGIP  709 (850)
Q Consensus       649 L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~-~l~~l~~L~~L~Ls~N~l~~~~p  709 (850)
                      |+|++|+++ .+|..+..+++|+.|+|++|++++ +|. .+..+++|++|++++|++++..+
T Consensus       426 L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~  485 (520)
T 2z7x_B          426 LDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCP  485 (520)
T ss_dssp             EECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             EECCCCccc-ccchhhhcCCCCCEEECCCCcCCc-cCHHHhccCCcccEEECcCCCCcccCC
Confidence            556666665 556666677778888888888874 444 37778888888888888876544

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=1.5e-43  Score=419.54  Aligned_cols=527  Identities=17%  Similarity=0.128  Sum_probs=400.8

Q ss_pred             eCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCCccccccCCCccEEeCCCCC
Q 048351          129 DLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAGNLDWISQLFSLRYLDLSSCN  208 (850)
Q Consensus       129 ~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~n~  208 (850)
                      +-++-+++  .+|..+.  +++++|||++|+|++..|.+|.++++|++|+|++|++. ..++.+|.++++|++|+|++|+
T Consensus        37 ~c~~~~l~--~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls~N~  111 (635)
T 4g8a_A           37 QCMELNFY--KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNP  111 (635)
T ss_dssp             ECTTSCCS--SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCC
T ss_pred             ECCCCCcC--ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEccCCc
Confidence            44555566  4777653  58999999999999888889999999999999999863 3344568999999999999999


Q ss_pred             CCCCcchhhhhcCCCCCcEEEccCCCCCCCCCccccccccCCCCcccEEEccCCCCCCccchhhhcCCCCCCCCCCCCCC
Q 048351          209 LSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISL  288 (850)
Q Consensus       209 l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~ip~~l~~l~~L  288 (850)
                      |++.+  +..|.++++|++|+|++|++++.++    ..+.++ ++|++|++++|++++..         +|..++.+++|
T Consensus       112 l~~l~--~~~f~~L~~L~~L~Ls~N~l~~l~~----~~~~~L-~~L~~L~Ls~N~l~~~~---------~~~~~~~l~~L  175 (635)
T 4g8a_A          112 IQSLA--LGAFSGLSSLQKLVAVETNLASLEN----FPIGHL-KTLKELNVAHNLIQSFK---------LPEYFSNLTNL  175 (635)
T ss_dssp             CCEEC--GGGGTTCTTCCEEECTTSCCCCSTT----CCCTTC-TTCCEEECCSSCCCCCC---------CCGGGGGCTTC
T ss_pred             CCCCC--HHHhcCCCCCCEEECCCCcCCCCCh----hhhhcC-cccCeeccccCccccCC---------Cchhhccchhh
Confidence            99863  3678999999999999999998876    456666 99999999999997631         34557788999


Q ss_pred             cEEEccCCcCCcccchhhhcCCCCc----EEEccCCccccccccccccccccccCCCCCChhccCCCCCCEEEccCCcCC
Q 048351          289 RTLTLSDNELDGEIPKFFQNMFKLE----GLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAGIS  364 (850)
Q Consensus       289 ~~L~Ls~N~l~~~~p~~l~~l~~L~----~L~L~~N~l~~~~~~~~~~~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~  364 (850)
                      ++|++++|++++..|..+..+.+++    .++++.|.+....+.                  ......++.+++.+|...
T Consensus       176 ~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~------------------~~~~~~~~~l~l~~n~~~  237 (635)
T 4g8a_A          176 EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG------------------AFKEIRLHKLTLRNNFDS  237 (635)
T ss_dssp             CEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTT------------------TTTTCEEEEEEEESCCSS
T ss_pred             hhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcc------------------cccchhhhhhhhhccccc
Confidence            9999999999988888887766544    688899988765443                  233445677888888766


Q ss_pred             CCCchhHhhcCcCCCEEecccCcCc------ccCChhhhhhccCCcCEEEccCCcCc----ccCC--CCCCCCcEEEccC
Q 048351          365 DSIPDWFSDTSHKLADLNFSHNQMT------GRFPNYISSMFILESPGIDISSNHLE----GPSP--SLPSNAFYIDLSK  432 (850)
Q Consensus       365 ~~~~~~~~~~~~~L~~L~Ls~N~l~------~~~p~~~~~~~~~~L~~L~l~~N~l~----~~~~--~~~~~L~~L~Ls~  432 (850)
                      ..++......+..++...+..+...      ......+...  ..+...++..+...    +...  ....++..+++.+
T Consensus       238 ~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~--~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~  315 (635)
T 4g8a_A          238 LNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL--CNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVS  315 (635)
T ss_dssp             HHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGG--GGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEES
T ss_pred             ccccchhhcCCcccccccccccccccccccccccccccccc--cchhhhhhhhhhhcccccchhhhhhhhcccccccccc
Confidence            5444443333456666555433222      1222222122  23333343333222    1111  1256788888888


Q ss_pred             CcCcCccccccccCCCCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCCCccccccCccEEeccCCccc--c
Q 048351          433 NKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFS--G  510 (850)
Q Consensus       433 n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~--~  510 (850)
                      +.+....+..   ....++.|++.+|.+.+..+.   .+..|+.+++.+|.+....  ....+++|+.|++++|.+.  +
T Consensus       316 ~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~---~l~~L~~l~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~  387 (635)
T 4g8a_A          316 VTIERVKDFS---YNFGWQHLELVNCKFGQFPTL---KLKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKG  387 (635)
T ss_dssp             CEEEECGGGG---SCCCCSEEEEESCEESSCCCC---BCTTCCEEEEESCCSCCBC--CCCBCTTCCEEECCSSCCBEEE
T ss_pred             cccccccccc---cchhhhhhhcccccccCcCcc---cchhhhhcccccccCCCCc--ccccccccccchhhcccccccc
Confidence            8776654432   236789999999988755443   4677889999988876432  3457889999999999886  3


Q ss_pred             CCchhhcCCCCcCeeccccccceeecchhHHhcCCCCCEEEccCCccccccC-cCcCCCCCcceeecccccCcccCCccc
Q 048351          511 ELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIP-FQLCHLADIQILDLSLNNISGNIPKCF  589 (850)
Q Consensus       511 ~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~~  589 (850)
                      ..+..+..+.+|+.+++..|.+. .++..+. .+++|+.+++++|......+ ..+..+++++.+++++|.+.+..|..+
T Consensus       388 ~~~~~~~~~~~L~~L~~~~~~~~-~~~~~~~-~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~  465 (635)
T 4g8a_A          388 CCSQSDFGTISLKYLDLSFNGVI-TMSSNFL-GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF  465 (635)
T ss_dssp             ECCHHHHSCSCCCEEECCSCSEE-EECSCCT-TCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTT
T ss_pred             ccccchhhhhhhhhhhccccccc-ccccccc-ccccccchhhhhcccccccccccccccccccccccccccccccccccc
Confidence            45667778889999999999887 4555554 68899999999888776554 457788999999999999988777776


Q ss_pred             cCcccCccccccCccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCC-CCCChhhhhccc
Q 048351          590 NNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKL-GGEVPEEIMDLV  668 (850)
Q Consensus       590 ~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~p~~l~~l~  668 (850)
                      ..++.+                                                   +.|+|++|++ .+.+|..|..++
T Consensus       466 ~~~~~L---------------------------------------------------~~L~Ls~N~~~~~~~~~~~~~l~  494 (635)
T 4g8a_A          466 NGLSSL---------------------------------------------------EVLKMAGNSFQENFLPDIFTELR  494 (635)
T ss_dssp             TTCTTC---------------------------------------------------CEEECTTCEEGGGEECSCCTTCT
T ss_pred             ccchhh---------------------------------------------------hhhhhhhcccccccCchhhhhcc
Confidence            665554                                                   8899999975 456788999999


Q ss_pred             cCCeEecCCCcCccCCCccccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCCcCcccCCCCC-cC-CCcCcccc
Q 048351          669 GLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGKIPTGT-QL-QSFNASVY  746 (850)
Q Consensus       669 ~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~-~~-~~~~~~~~  746 (850)
                      +|++|+|++|++++.+|..|+++++|++|+|++|+|++.+|..|..+++|++||+++|++++.+|... .+ .++....+
T Consensus       495 ~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L  574 (635)
T 4g8a_A          495 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNL  574 (635)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEEC
T ss_pred             ccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEe
Confidence            99999999999999999999999999999999999999999999999999999999999999888653 22 45666779


Q ss_pred             CCCCCCCCCCC
Q 048351          747 DGNPELCGLPL  757 (850)
Q Consensus       747 ~gN~~lc~~~~  757 (850)
                      .|||+.|+|.+
T Consensus       575 ~~Np~~C~C~~  585 (635)
T 4g8a_A          575 TQNDFACTCEH  585 (635)
T ss_dssp             TTCCBCCSGGG
T ss_pred             eCCCCcccCCc
Confidence            99999999874

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=9.8e-44  Score=424.40  Aligned_cols=475  Identities=17%  Similarity=0.168  Sum_probs=346.7

Q ss_pred             CCccEEeCCCCCCCCCcchhhhhcCCCCCcEEEc-cCCCCCCCCCccccccccCCCCcc--cEEE----------ccCCC
Q 048351          197 FSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYL-EQCDLQLQPTIHRSFSHLNSSPSL--ETLG----------LSYNN  263 (850)
Q Consensus       197 ~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L-~~n~l~~~~~~~~~~~~~~~~~~L--~~L~----------Ls~N~  263 (850)
                      ..++.|+|++|.+++.  +|..++++++|++|+| ++|.+.|..+.........+ +..  +.+.          .....
T Consensus       323 ~~V~~L~Ls~~~L~G~--ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l-~~~~l~~lr~~~~~~~l~~~~~~~  399 (876)
T 4ecn_A          323 GRVTGLSLAGFGAKGR--VPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDM-SEERKHRIRMHYKKMFLDYDQRLN  399 (876)
T ss_dssp             SCEEEEECTTTCCEEE--ECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSC-CHHHHHHHHTHHHHHHTCCCGGGG
T ss_pred             CCEEEEECccCCCCCc--CchHHhccccceEeeeccccccccccccccccccccc-chhHHHHHHHhhhhhhhccCcchh
Confidence            3567777777777664  5667777777777777 66666655331100000000 000  0000          00011


Q ss_pred             CCCccchhhhcCCC-CCCCCCCCCCCcEEEccC--CcCCcccchhhhcCCCCcEEEccCCccccc-cccccccccccccC
Q 048351          264 LTASIYPWLFNVSS-IPDAPGPMISLRTLTLSD--NELDGEIPKFFQNMFKLEGLSLRGNSLEGV-ISEHFFSNFSYLKM  339 (850)
Q Consensus       264 l~~~~~~~l~~l~~-ip~~l~~l~~L~~L~Ls~--N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~-~~~~~~~~l~~~~l  339 (850)
                      +.+.++..+..... .+........++.+.+..  |++++ +|..++++++|++|+|++|.+++. ++... ...+.+.+
T Consensus       400 ~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~-~~~s~n~~  477 (876)
T 4ecn_A          400 LSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDW-EDANSDYA  477 (876)
T ss_dssp             SCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSC-SCTTSHHH
T ss_pred             hhHHHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccc-cccccccc
Confidence            11111111111000 111122333455555554  88888 899999999999999999999882 22211 11122333


Q ss_pred             CCCCChhcc--CCCCCCEEEccCCcCCCCCchhHhhcCcCCCEEecccCc-Ccc-cCChhhhhh-----ccCCcCEEEcc
Q 048351          340 GPHFPKWLQ--TQKHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQ-MTG-RFPNYISSM-----FILESPGIDIS  410 (850)
Q Consensus       340 ~~~~p~~l~--~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~N~-l~~-~~p~~~~~~-----~~~~L~~L~l~  410 (850)
                      .|.+|..++  ++++|+.|++++|.+.+.+|..+... ++|+.|++++|+ +++ .+|..+...     ..++|+.|+++
T Consensus       478 ~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L-~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls  556 (876)
T 4ecn_A          478 KQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDL-PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMG  556 (876)
T ss_dssp             HHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGC-SSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECC
T ss_pred             cccCChhhhhccCCCCCEEECcCCCCCccChHHHhCC-CCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEee
Confidence            345677777  99999999999999999999888765 699999999998 998 888776322     11489999999


Q ss_pred             CCcCcccCCC--CCCCCcEEEccCCcCcCccccccccCCCCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccC
Q 048351          411 SNHLEGPSPS--LPSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKI  488 (850)
Q Consensus       411 ~N~l~~~~~~--~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~  488 (850)
                      +|.++ .+|.  .+.                      .+++|++|++++|.++ .+| .|..+++|+.|++++|.++ .+
T Consensus       557 ~N~L~-~ip~~~~l~----------------------~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~l  610 (876)
T 4ecn_A          557 YNNLE-EFPASASLQ----------------------KMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EI  610 (876)
T ss_dssp             SSCCC-BCCCHHHHT----------------------TCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CC
T ss_pred             CCcCC-ccCChhhhh----------------------cCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cc
Confidence            99988 4443  222                      3478999999999999 888 8999999999999999999 89


Q ss_pred             CCccccccC-ccEEeccCCccccCCchhhcCCCC--cCeeccccccceeecchhH---H-hcCCCCCEEEccCCcccccc
Q 048351          489 PNSCGYLQK-MLTLSLHHNNFSGELPSLLKNFTH--LRVVALEENSISGNIPAWI---G-ESLLNLVVLDLRSNRFYGKI  561 (850)
Q Consensus       489 p~~~~~l~~-L~~L~Ls~N~l~~~~p~~l~~l~~--L~~L~L~~N~l~~~ip~~~---~-~~l~~L~~L~L~~N~l~~~~  561 (850)
                      |..+..+++ |+.|++++|+++ .+|..+..++.  |+.|++++|++++.+|...   . ..+++|++|++++|.++ .+
T Consensus       611 p~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~l  688 (876)
T 4ecn_A          611 PEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KF  688 (876)
T ss_dssp             CTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SC
T ss_pred             hHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-cc
Confidence            999999999 999999999999 78888877755  9999999999987766322   1 02458999999999999 56


Q ss_pred             CcCc-CCCCCcceeecccccCcccCCccccCcccCccccccCccccccccccCCCcccCccceEeeEEEEEecCcccccc
Q 048351          562 PFQL-CHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYK  640 (850)
Q Consensus       562 p~~l-~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  640 (850)
                      |..+ ..+++|+.|+|++|+++ .+|..+.....                                           ...
T Consensus       689 p~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~-------------------------------------------~~l  724 (876)
T 4ecn_A          689 PTELFATGSPISTIILSNNLMT-SIPENSLKPKD-------------------------------------------GNY  724 (876)
T ss_dssp             CHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTT-------------------------------------------SCC
T ss_pred             CHHHHccCCCCCEEECCCCcCC-ccChHHhcccc-------------------------------------------ccc
Confidence            6554 48899999999999998 66654432110                                           001


Q ss_pred             cccccccEEEcCCCCCCCCChhhhh--ccccCCeEecCCCcCccCCCccccccCCCCeeeCCC------CcCcccCcccc
Q 048351          641 NTLGLVKSVDLSSNKLGGEVPEEIM--DLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSR------NQFSGGIPSSL  712 (850)
Q Consensus       641 ~~l~~L~~L~Ls~N~l~~~~p~~l~--~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~------N~l~~~~p~~l  712 (850)
                      ..++.|+.|+|++|+++ .+|..+.  .+++|+.|+|++|++++ +|..+.++++|+.|+|++      |++.+.+|..+
T Consensus       725 ~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l  802 (876)
T 4ecn_A          725 KNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGI  802 (876)
T ss_dssp             TTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTG
T ss_pred             cccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHH
Confidence            23446699999999999 7888887  99999999999999998 799999999999999977      88999999999


Q ss_pred             cCCCCCCEEEcCCCcCcccCCCCCcCCCcCccccCCCCCCC
Q 048351          713 SQVNRLSVMDLSHNNLSGKIPTGTQLQSFNASVYDGNPELC  753 (850)
Q Consensus       713 ~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~lc  753 (850)
                      ..+++|++|++++|++ +.||... ...+....+.+|+...
T Consensus       803 ~~L~~L~~L~Ls~N~L-~~Ip~~l-~~~L~~LdLs~N~l~~  841 (876)
T 4ecn_A          803 TTCPSLIQLQIGSNDI-RKVDEKL-TPQLYILDIADNPNIS  841 (876)
T ss_dssp             GGCSSCCEEECCSSCC-CBCCSCC-CSSSCEEECCSCTTCE
T ss_pred             hcCCCCCEEECCCCCC-CccCHhh-cCCCCEEECCCCCCCc
Confidence            9999999999999999 8999863 3566667788887654

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=1.1e-42  Score=405.00  Aligned_cols=460  Identities=20%  Similarity=0.215  Sum_probs=253.9

Q ss_pred             CCEEeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCCccccccCCCccEEeC
Q 048351          125 LRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAGNLDWISQLFSLRYLDL  204 (850)
Q Consensus       125 L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~L  204 (850)
                      .+++|+++|.++  .+|..+.  ++|++|+|++|.+++..|.+|+++++|++|++++|++. ...+..+.++++|++|++
T Consensus        33 ~~~l~ls~~~L~--~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L  107 (562)
T 3a79_B           33 ESMVDYSNRNLT--HVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDV  107 (562)
T ss_dssp             CCEEECTTSCCC--SCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCC-EECTTTTTTCTTCCEEEC
T ss_pred             CcEEEcCCCCCc--cCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCC-cCCHHHhCCCCCCCEEEC
Confidence            367777777777  3565543  67777777777777666667777777777777777652 223345666777777777


Q ss_pred             CCCCCCCCcchhhhhcCCCCCcEEEccCCCCCCCC-CccccccccCCCCcccEEEccCCCCCCccchhhhcCCCCCCCCC
Q 048351          205 SSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQP-TIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPG  283 (850)
Q Consensus       205 s~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~ip~~l~  283 (850)
                      ++|+++.+   +..  .+++|++|++++|.+++.+ |    ..+.++ ++|++|++++|++++.             .+.
T Consensus       108 s~N~l~~l---p~~--~l~~L~~L~Ls~N~l~~l~~p----~~~~~l-~~L~~L~L~~n~l~~~-------------~~~  164 (562)
T 3a79_B          108 SHNRLQNI---SCC--PMASLRHLDLSFNDFDVLPVC----KEFGNL-TKLTFLGLSAAKFRQL-------------DLL  164 (562)
T ss_dssp             TTSCCCEE---CSC--CCTTCSEEECCSSCCSBCCCC----GGGGGC-TTCCEEEEECSBCCTT-------------TTG
T ss_pred             CCCcCCcc---Ccc--ccccCCEEECCCCCccccCch----Hhhccc-CcccEEecCCCccccC-------------chh
Confidence            77776653   222  5666666666666666532 2    234444 6666666666666542             122


Q ss_pred             CCCCC--cEEEccCCcC--CcccchhhhcCC-CCcEEEccCCccccccccccccccccccCCCCCChhccCCCCCCEEEc
Q 048351          284 PMISL--RTLTLSDNEL--DGEIPKFFQNMF-KLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDI  358 (850)
Q Consensus       284 ~l~~L--~~L~Ls~N~l--~~~~p~~l~~l~-~L~~L~L~~N~l~~~~~~~~~~~l~~~~l~~~~p~~l~~l~~L~~L~L  358 (850)
                      .+++|  ++|++++|.+  ++..|..+..+. ..-.+++++|.+.+.++..                .+..+++|+.+++
T Consensus       165 ~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~----------------~~~~l~~L~~L~l  228 (562)
T 3a79_B          165 PVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNM----------------SVNALGHLQLSNI  228 (562)
T ss_dssp             GGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEE----------------EESSEEEEEEEEE
T ss_pred             hhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhh----------------cccccceEEEecc
Confidence            33333  6666666666  555555555443 1113455555555433321                1344555555666


Q ss_pred             cCCcCCC----CCchhHhhcCcCCCEEecccCcCcccCChhhhhhccCCcCEEEccCCcCcccCCCCCCCCcEEEccCCc
Q 048351          359 SSAGISD----SIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSLPSNAFYIDLSKNK  434 (850)
Q Consensus       359 s~n~l~~----~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~L~~L~Ls~n~  434 (850)
                      ++|...-    .....+.. .++++.++++++.+.+.....+                                      
T Consensus       229 ~~n~~~~~~l~~~~~~l~~-l~~L~~L~L~~~~l~~~~~~~~--------------------------------------  269 (562)
T 3a79_B          229 KLNDENCQRLMTFLSELTR-GPTLLNVTLQHIETTWKCSVKL--------------------------------------  269 (562)
T ss_dssp             ECCSTTHHHHHHHHHHHHS-CSSCEEEEEEEEEECHHHHHHH--------------------------------------
T ss_pred             cccccccchHHHHHHHHhc-cCcceEEEecCCcCcHHHHHHH--------------------------------------
Confidence            5553110    00111111 2345555555444432211110                                      


Q ss_pred             CcCccccccccCCCCccEEEccCCCCCCCCCccc-----ccCCCCCEEEcCCCcccccCCC-cccc---ccCccEEeccC
Q 048351          435 FSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCW-----LQFNMLRILNLANNNFSGKIPN-SCGY---LQKMLTLSLHH  505 (850)
Q Consensus       435 l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~-----~~l~~L~~L~Ls~N~l~~~~p~-~~~~---l~~L~~L~Ls~  505 (850)
                          .+..   ..++|++|++++|.++|.+|..+     .+++.|+.++++.|.+  .+|. .+..   ..+|++|++++
T Consensus       270 ----~~~~---~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~  340 (562)
T 3a79_B          270 ----FQFF---WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISD  340 (562)
T ss_dssp             ----HHHH---TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEES
T ss_pred             ----HHhh---hcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccC
Confidence                0000   01234444444444444444333     3333333333333333  1221 1111   13345555555


Q ss_pred             CccccCCchhhcCCCCcCeeccccccceeecchhHHhcCCCCCEEEccCCcccc--ccCcCcCCCCCcceeecccccCcc
Q 048351          506 NNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYG--KIPFQLCHLADIQILDLSLNNISG  583 (850)
Q Consensus       506 N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~  583 (850)
                      |.+....  ....+++|++|++++|++++.+|..+. .+++|++|++++|++++  .+|..+..+++|++|++++|++++
T Consensus       341 n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~  417 (562)
T 3a79_B          341 TPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCS-TLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNS  417 (562)
T ss_dssp             SCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCC-SCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBS
T ss_pred             CCccccc--CccCCCCceEEECCCCccccchhhhhc-ccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCC
Confidence            5443211  013445555555555555544444443 45555555555555554  223456666667777777777665


Q ss_pred             cCCcc-ccCcccCccccccCccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChh
Q 048351          584 NIPKC-FNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPE  662 (850)
Q Consensus       584 ~~p~~-~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~  662 (850)
                      .+|.. +..+++                                                   |+.|+|++|++++.+|.
T Consensus       418 ~~~~~~~~~l~~---------------------------------------------------L~~L~l~~n~l~~~~~~  446 (562)
T 3a79_B          418 HAYDRTCAWAES---------------------------------------------------ILVLNLSSNMLTGSVFR  446 (562)
T ss_dssp             CCSSCCCCCCTT---------------------------------------------------CCEEECCSSCCCGGGGS
T ss_pred             ccChhhhcCccc---------------------------------------------------CCEEECCCCCCCcchhh
Confidence            44432 333332                                                   36777777777766665


Q ss_pred             hhhccccCCeEecCCCcCccCCCccccccCCCCeeeCCCCcCcccCccc-ccCCCCCCEEEcCCCcCcccCCC
Q 048351          663 EIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSS-LSQVNRLSVMDLSHNNLSGKIPT  734 (850)
Q Consensus       663 ~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~ls~N~l~g~iP~  734 (850)
                      .+.  ++|+.|+|++|+++ .+|..+..+++|++|+|++|++++ +|.. +..+++|++|++++|+++|.+|.
T Consensus       447 ~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~~  515 (562)
T 3a79_B          447 CLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCTCPG  515 (562)
T ss_dssp             SCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCC-CCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred             hhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCC-CCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence            544  67888888888888 577777788899999999999984 4544 88899999999999999887664

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=1.6e-41  Score=395.24  Aligned_cols=458  Identities=18%  Similarity=0.173  Sum_probs=321.9

Q ss_pred             CCCcccccccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCcccCCCCCCcEEEccCCCCCCCC
Q 048351          109 ASLRGTLNPALLKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAG  188 (850)
Q Consensus       109 ~~l~g~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~  188 (850)
                      +++++ +|..+.  ++|++|+|++|.+++. .|..++++++|++|+|++|.+++..|.+|+++++|++|++++|++....
T Consensus        41 ~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp  116 (562)
T 3a79_B           41 RNLTH-VPKDLP--PRTKALSLSQNSISEL-RMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNIS  116 (562)
T ss_dssp             SCCCS-CCTTSC--TTCCEEECCSSCCCCC-CGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEEC
T ss_pred             CCCcc-CCCCCC--CCcCEEECCCCCcccc-ChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccC
Confidence            35664 666554  8999999999999975 6678999999999999999999988999999999999999999975322


Q ss_pred             CccccccCCCccEEeCCCCCCCCCcchhhhhcCCCCCcEEEccCCCCCCCCCccccccccCCCCcc--cEEEccCCCC--
Q 048351          189 NLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSL--ETLGLSYNNL--  264 (850)
Q Consensus       189 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L--~~L~Ls~N~l--  264 (850)
                        . . .+++|++|++++|++++.+ .+..++++++|++|++++|.+++..       +..+ ++|  ++|++++|++  
T Consensus       117 --~-~-~l~~L~~L~Ls~N~l~~l~-~p~~~~~l~~L~~L~L~~n~l~~~~-------~~~l-~~L~L~~L~L~~n~l~~  183 (562)
T 3a79_B          117 --C-C-PMASLRHLDLSFNDFDVLP-VCKEFGNLTKLTFLGLSAAKFRQLD-------LLPV-AHLHLSCILLDLVSYHI  183 (562)
T ss_dssp             --S-C-CCTTCSEEECCSSCCSBCC-CCGGGGGCTTCCEEEEECSBCCTTT-------TGGG-TTSCEEEEEEEESSCCC
T ss_pred             --c-c-ccccCCEEECCCCCccccC-chHhhcccCcccEEecCCCccccCc-------hhhh-hhceeeEEEeecccccc
Confidence              2 2 8999999999999998853 3578999999999999999998632       2222 455  9999999999  


Q ss_pred             CCccchhhhcCCCCCCCCCCCC-CCcEEEccCCcCCcccch-hhhcCCCCcEEEccCCccccccccccccccccccCCCC
Q 048351          265 TASIYPWLFNVSSIPDAPGPMI-SLRTLTLSDNELDGEIPK-FFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPH  342 (850)
Q Consensus       265 ~~~~~~~l~~l~~ip~~l~~l~-~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~~~l~~~  342 (850)
                      ++..|..+          ..+. ..-.+++++|.+.+.++. .+..+++|+.+++++|+.....-.             .
T Consensus       184 ~~~~~~~l----------~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~-------------~  240 (562)
T 3a79_B          184 KGGETESL----------QIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLM-------------T  240 (562)
T ss_dssp             CSSSCCEE----------EECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHH-------------H
T ss_pred             cccCcccc----------cccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHH-------------H
Confidence            77655443          3322 122668899998876654 456789999999999862110000             0


Q ss_pred             CChhccCCCCCCEEEccCCcCCCCCchhHhh--cCcCCCEEecccCcCcccCChhhhhhccCCcCEEEccCCcCcccCCC
Q 048351          343 FPKWLQTQKHFSVLDISSAGISDSIPDWFSD--TSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPS  420 (850)
Q Consensus       343 ~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~--~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~l~~N~l~~~~~~  420 (850)
                      .+..+..+++|+.++++++.+.+.....+..  ..++|++|++++|.++|.+|..+....                    
T Consensus       241 ~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~--------------------  300 (562)
T 3a79_B          241 FLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYS--------------------  300 (562)
T ss_dssp             HHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCC--------------------
T ss_pred             HHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcc--------------------
Confidence            1123677889999998888776532221111  112567777777776666654430000                    


Q ss_pred             CCCCCcEEEccCCcCcCccccccccCCCCccEEEccCCCCCCCCC-ccccc---CCCCCEEEcCCCcccccCCCcccccc
Q 048351          421 LPSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLP-DCWLQ---FNMLRILNLANNNFSGKIPNSCGYLQ  496 (850)
Q Consensus       421 ~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p-~~~~~---l~~L~~L~Ls~N~l~~~~p~~~~~l~  496 (850)
                       ..                      .++.|+.++++.+.+  .+| ..+..   ..+|+.|++++|.+....  ....++
T Consensus       301 -~~----------------------~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~  353 (562)
T 3a79_B          301 -ET----------------------ALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPS  353 (562)
T ss_dssp             -SC----------------------SCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCC
T ss_pred             -cc----------------------cchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCC
Confidence             01                      123444444444444  233 12211   245666666666654221  114566


Q ss_pred             CccEEeccCCccccCCchhhcCCCCcCeecccccccee--ecchhHHhcCCCCCEEEccCCccccccCc-CcCCCCCcce
Q 048351          497 KMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISG--NIPAWIGESLLNLVVLDLRSNRFYGKIPF-QLCHLADIQI  573 (850)
Q Consensus       497 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~--~ip~~~~~~l~~L~~L~L~~N~l~~~~p~-~l~~l~~L~~  573 (850)
                      +|++|++++|++++.+|..+.++++|++|++++|++++  .+|..+. .+++|++|++++|.+++.+|. .+..+++|++
T Consensus       354 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~-~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~  432 (562)
T 3a79_B          354 SFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTK-NMSSLETLDVSLNSLNSHAYDRTCAWAESILV  432 (562)
T ss_dssp             CCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTT-TCTTCCEEECTTSCCBSCCSSCCCCCCTTCCE
T ss_pred             CceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhc-CCCCCCEEECCCCcCCCccChhhhcCcccCCE
Confidence            77777777777776667777777777777777777763  2233343 577888888888888774544 4777888888


Q ss_pred             eecccccCcccCCccccCcccCccccccCccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCC
Q 048351          574 LDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSS  653 (850)
Q Consensus       574 L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~  653 (850)
                      |++++|++++.+|..+.  +                                                   .|+.|+|++
T Consensus       433 L~l~~n~l~~~~~~~l~--~---------------------------------------------------~L~~L~L~~  459 (562)
T 3a79_B          433 LNLSSNMLTGSVFRCLP--P---------------------------------------------------KVKVLDLHN  459 (562)
T ss_dssp             EECCSSCCCGGGGSSCC--T---------------------------------------------------TCSEEECCS
T ss_pred             EECCCCCCCcchhhhhc--C---------------------------------------------------cCCEEECCC
Confidence            88888888876655432  2                                                   238899999


Q ss_pred             CCCCCCChhhhhccccCCeEecCCCcCccCCCcc-ccccCCCCeeeCCCCcCcccCc
Q 048351          654 NKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPK-IGQLQSLDFLDLSRNQFSGGIP  709 (850)
Q Consensus       654 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-l~~l~~L~~L~Ls~N~l~~~~p  709 (850)
                      |+++ .+|..+..+++|+.|+|++|++++ +|.. +..+++|+.|++++|.+.+..|
T Consensus       460 N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~  514 (562)
T 3a79_B          460 NRIM-SIPKDVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCTCP  514 (562)
T ss_dssp             SCCC-CCCTTTTSSCCCSEEECCSSCCCC-CCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred             CcCc-ccChhhcCCCCCCEEECCCCCCCC-CCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence            9998 677777799999999999999995 5555 9999999999999999997665

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=9.4e-42  Score=383.77  Aligned_cols=408  Identities=23%  Similarity=0.269  Sum_probs=212.9

Q ss_pred             ccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCCccccccC
Q 048351          117 PALLKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAGNLDWISQL  196 (850)
Q Consensus       117 ~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~l  196 (850)
                      |.-.+.++|++|++++|.+ | .+|..++++++|++|++++|.+.|.+|.+++++++|+.+++..|.            .
T Consensus         5 p~~~~~~~L~~L~l~~n~l-~-~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~------------~   70 (454)
T 1jl5_A            5 PRNVSNTFLQEPLRHSSNL-T-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCL------------D   70 (454)
T ss_dssp             -------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHH------------H
T ss_pred             ccccccccchhhhcccCch-h-hCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhh------------c
Confidence            3444678999999999999 5 599999999999999999999999999999999999888887764            1


Q ss_pred             CCccEEeCCCCCCCCCcchhhhhcCCCCCcEEEccCCCCCCCCCccccccccCCCCcccEEEccCCCCCCccchhhhcCC
Q 048351          197 FSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVS  276 (850)
Q Consensus       197 ~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~  276 (850)
                      .++++|++++|.+++++.+      .++|++|++++|.+++.+.     .    .++|++|++++|++++          
T Consensus        71 ~~l~~L~l~~~~l~~lp~~------~~~L~~L~l~~n~l~~lp~-----~----~~~L~~L~l~~n~l~~----------  125 (454)
T 1jl5_A           71 RQAHELELNNLGLSSLPEL------PPHLESLVASCNSLTELPE-----L----PQSLKSLLVDNNNLKA----------  125 (454)
T ss_dssp             HTCSEEECTTSCCSCCCSC------CTTCSEEECCSSCCSSCCC-----C----CTTCCEEECCSSCCSC----------
T ss_pred             cCCCEEEecCCccccCCCC------cCCCCEEEccCCcCCcccc-----c----cCCCcEEECCCCccCc----------
Confidence            5688899999988886432      3678888888888877432     1    1678888888888775          


Q ss_pred             CCCCCCCCCCCCcEEEccCCcCCcccchhhhcCCCCcEEEccCCccccccccccccccccccCCCCCChhccCCCCCCEE
Q 048351          277 SIPDAPGPMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVL  356 (850)
Q Consensus       277 ~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~~~l~~~~p~~l~~l~~L~~L  356 (850)
                       +|..   .++|++|++++|++++ +| .++++++|++|++++|++++. |.                 .   ..+|++|
T Consensus       126 -l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~l-p~-----------------~---~~~L~~L  178 (454)
T 1jl5_A          126 -LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKKL-PD-----------------L---PPSLEFI  178 (454)
T ss_dssp             -CCSC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSCC-CC-----------------C---CTTCCEE
T ss_pred             -ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCccc-CC-----------------C---cccccEE
Confidence             2211   1578888888888875 56 477788888888888877642 21                 0   1245555


Q ss_pred             EccCCcCCCCCchhHhhcCcCCCEEecccCcCcccCChhhhhhccCCcCEEEccCCcCcccCCCCCCCCcEEEccCCcCc
Q 048351          357 DISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSLPSNAFYIDLSKNKFS  436 (850)
Q Consensus       357 ~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~L~~L~Ls~n~l~  436 (850)
                      ++++|.+++ +| .+.. +                          ++++.|++++|++++ +|..+              
T Consensus       179 ~L~~n~l~~-l~-~~~~-l--------------------------~~L~~L~l~~N~l~~-l~~~~--------------  214 (454)
T 1jl5_A          179 AAGNNQLEE-LP-ELQN-L--------------------------PFLTAIYADNNSLKK-LPDLP--------------  214 (454)
T ss_dssp             ECCSSCCSS-CC-CCTT-C--------------------------TTCCEEECCSSCCSS-CCCCC--------------
T ss_pred             ECcCCcCCc-Cc-cccC-C--------------------------CCCCEEECCCCcCCc-CCCCc--------------
Confidence            555555444 22 1211 2                          333444444444333 11111              


Q ss_pred             CccccccccCCCCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCCCccccccCccEEeccCCccccCCchhh
Q 048351          437 GPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLL  516 (850)
Q Consensus       437 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l  516 (850)
                                 ++|++|++++|.++ .+|. +..+++|++|++++|++++ +|..   +++|++|++++|++++ +|.. 
T Consensus       215 -----------~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~-  275 (454)
T 1jl5_A          215 -----------LSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL-  275 (454)
T ss_dssp             -----------TTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC-
T ss_pred             -----------CcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc-
Confidence                       34556666666555 4442 5566666666666666653 3322   2556666666666654 3432 


Q ss_pred             cCCCCcCeeccccccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccCcccCCccccCcccCc
Q 048351          517 KNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMT  596 (850)
Q Consensus       517 ~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~  596 (850)
                        .++|++|++++|++++ +|.    ..++|++|++++|++++. +.   -.++|++|++++|++++ +|..   ++   
T Consensus       276 --~~~L~~L~ls~N~l~~-l~~----~~~~L~~L~l~~N~l~~i-~~---~~~~L~~L~Ls~N~l~~-lp~~---~~---  337 (454)
T 1jl5_A          276 --PQSLTFLDVSENIFSG-LSE----LPPNLYYLNASSNEIRSL-CD---LPPSLEELNVSNNKLIE-LPAL---PP---  337 (454)
T ss_dssp             --CTTCCEEECCSSCCSE-ESC----CCTTCCEEECCSSCCSEE-CC---CCTTCCEEECCSSCCSC-CCCC---CT---
T ss_pred             --cCcCCEEECcCCccCc-ccC----cCCcCCEEECcCCcCCcc-cC---CcCcCCEEECCCCcccc-cccc---CC---
Confidence              2566666666666653 332    124666666666666642 21   11466677777776664 3332   11   


Q ss_pred             cccccCccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecC
Q 048351          597 QERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLS  676 (850)
Q Consensus       597 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls  676 (850)
                                                                      .|+.|++++|+++ .+|.   .+++|+.|+++
T Consensus       338 ------------------------------------------------~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~  365 (454)
T 1jl5_A          338 ------------------------------------------------RLERLIASFNHLA-EVPE---LPQNLKQLHVE  365 (454)
T ss_dssp             ------------------------------------------------TCCEEECCSSCCS-CCCC---CCTTCCEEECC
T ss_pred             ------------------------------------------------cCCEEECCCCccc-cccc---hhhhccEEECC
Confidence                                                            2266777777776 3444   35667777777


Q ss_pred             CCcCcc--CCCccccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCCcCcc--cCCC
Q 048351          677 RNNLTG--YITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSG--KIPT  734 (850)
Q Consensus       677 ~N~l~~--~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g--~iP~  734 (850)
                      +|++++  .+|.+++++        +.|++.|.+|..   +++|++||+++|+++|  .+|.
T Consensus       366 ~N~l~~l~~ip~~l~~L--------~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP~  416 (454)
T 1jl5_A          366 YNPLREFPDIPESVEDL--------RMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIPE  416 (454)
T ss_dssp             SSCCSSCCCCCTTCCEE--------ECCC---------------------------------
T ss_pred             CCCCCcCCCChHHHHhh--------hhcccccccccc---cCcCCEEECCCCcCCccccchh
Confidence            777776  455554432        335555666553   3566777777777766  5554

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=3.3e-39  Score=366.08  Aligned_cols=394  Identities=18%  Similarity=0.153  Sum_probs=279.0

Q ss_pred             cEEeCCCCCCCCCcchhhhhcCCCCCcEEEccCCCCCCCCCccccccccCCCCcccEEEccCCCCCCccchhhhcCCCCC
Q 048351          200 RYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIP  279 (850)
Q Consensus       200 ~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~ip  279 (850)
                      +.++.+++.++.++.    +  .++|++|+|++|.+++..+    ..+.++ ++|++|++++|.+.+.++         |
T Consensus        13 ~~~~c~~~~l~~lp~----l--~~~l~~L~Ls~n~i~~~~~----~~~~~l-~~L~~L~L~~n~~~~~i~---------~   72 (455)
T 3v47_A           13 YNAICINRGLHQVPE----L--PAHVNYVDLSLNSIAELNE----TSFSRL-QDLQFLKVEQQTPGLVIR---------N   72 (455)
T ss_dssp             TEEECCSSCCSSCCC----C--CTTCCEEECCSSCCCEECT----TTTSSC-TTCCEEECCCCSTTCEEC---------T
T ss_pred             cccCcCCCCcccCCC----C--CCccCEEEecCCccCcCCh----hHhccC-ccccEEECcCCcccceEC---------c
Confidence            355666666666432    1  1567777777777766555    445555 778888888887765542         2


Q ss_pred             CCCCCCCCCcEEEccCCcCCcccchhhhcCCCCcEEEccCCccccccccccccccccccCCCCCChhccCCCCCCEEEcc
Q 048351          280 DAPGPMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDIS  359 (850)
Q Consensus       280 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~~~l~~~~p~~l~~l~~L~~L~Ls  359 (850)
                      ..|..+++|++|++++|++++..|..|+++++|++|++++|.+++..+..               ..+..+++|++|+++
T Consensus        73 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---------------~~~~~l~~L~~L~L~  137 (455)
T 3v47_A           73 NTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSG---------------NFFKPLTSLEMLVLR  137 (455)
T ss_dssp             TTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHS---------------STTTTCTTCCEEECC
T ss_pred             ccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCc---------------ccccCcccCCEEECC
Confidence            34677788888888888888777778888888888888888877644331               125667778888888


Q ss_pred             CCcCCCCCchhHhhcCcCCCEEecccCcCcccCChhhhhhccCCcCEEEccCCcCcccCCCCCCCCcEEEccCCcCcCcc
Q 048351          360 SAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSLPSNAFYIDLSKNKFSGPI  439 (850)
Q Consensus       360 ~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~L~~L~Ls~n~l~~~~  439 (850)
                      +|.+++..|..+...+++|++|++++|.+++..|..+.....                                      
T Consensus       138 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~--------------------------------------  179 (455)
T 3v47_A          138 DNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQG--------------------------------------  179 (455)
T ss_dssp             SSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTT--------------------------------------
T ss_pred             CCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccc--------------------------------------
Confidence            888777767664444467777777777777666655422111                                      


Q ss_pred             ccccccCCCCccEEEccCCCCCCCCCcc--------cccCCCCCEEEcCCCcccccCCCccccc---cCccEEeccCCcc
Q 048351          440 SFLCSFSGQNLVYLDLSSNLLSGKLPDC--------WLQFNMLRILNLANNNFSGKIPNSCGYL---QKMLTLSLHHNNF  508 (850)
Q Consensus       440 ~~~~~~~~~~L~~L~Ls~n~l~~~~p~~--------~~~l~~L~~L~Ls~N~l~~~~p~~~~~l---~~L~~L~Ls~N~l  508 (850)
                              .+|+.|++++|.+.+..+..        +..+++|++|++++|.+++..|..+...   ++|+.|++++|.+
T Consensus       180 --------~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~  251 (455)
T 3v47_A          180 --------KHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYN  251 (455)
T ss_dssp             --------CEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTT
T ss_pred             --------ccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccc
Confidence                    34455555555554333221        2234556666666666665555544433   5666677766665


Q ss_pred             ccCCchhhcCCCCcCeeccccccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccCcccCCcc
Q 048351          509 SGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKC  588 (850)
Q Consensus       509 ~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~  588 (850)
                      .+.... ...++.+..     ..+.     . . ..++|++|++++|.+++..|..+..+++|++|++++|++++..|..
T Consensus       252 ~~~~~~-~~~~~~~~~-----~~~~-----~-~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~  318 (455)
T 3v47_A          252 MGSSFG-HTNFKDPDN-----FTFK-----G-L-EASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNA  318 (455)
T ss_dssp             TSCCTT-CCSSCCCCT-----TTTG-----G-G-TTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTT
T ss_pred             cccccc-hhhhccCcc-----cccc-----c-c-cccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhH
Confidence            432110 111111110     0110     0 0 2468999999999999999999999999999999999999888887


Q ss_pred             ccCcccCccccccCccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccc
Q 048351          589 FNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLV  668 (850)
Q Consensus       589 ~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  668 (850)
                      +.++++|                                                   ++|+|++|++++..|..++.++
T Consensus       319 ~~~l~~L---------------------------------------------------~~L~Ls~N~l~~~~~~~~~~l~  347 (455)
T 3v47_A          319 FWGLTHL---------------------------------------------------LKLNLSQNFLGSIDSRMFENLD  347 (455)
T ss_dssp             TTTCTTC---------------------------------------------------CEEECCSSCCCEECGGGGTTCT
T ss_pred             hcCcccC---------------------------------------------------CEEECCCCccCCcChhHhcCcc
Confidence            7776665                                                   8899999999988899999999


Q ss_pred             cCCeEecCCCcCccCCCccccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCCcCcccCCCCCcC
Q 048351          669 GLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGKIPTGTQL  738 (850)
Q Consensus       669 ~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~  738 (850)
                      +|++|+|++|++++..|..|.++++|++|+|++|++++..+..+..+++|++|++++|+++|.+|....+
T Consensus       348 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~l  417 (455)
T 3v47_A          348 KLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL  417 (455)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHH
T ss_pred             cCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcchHH
Confidence            9999999999999999999999999999999999999888888899999999999999999999865433

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=1.7e-38  Score=360.14  Aligned_cols=379  Identities=21%  Similarity=0.167  Sum_probs=230.2

Q ss_pred             CCCCEEeCCCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCCccccccCCCccEEeCCCCCCCCCcchhhhhcCCCCCcE
Q 048351          148 SKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKT  227 (850)
Q Consensus       148 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~  227 (850)
                      ++|++|+|++|.+++..|..|+++++|++|++++|.+.....+..+.++++|++|++++|++++.  .+..++++++|++
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~  107 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQL--ETGAFNGLANLEV  107 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEE--CTTTTTTCTTCCE
T ss_pred             CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCcc--ChhhccCcccCCE
Confidence            34444444444444444444444444444444444432112222344444444444444444432  2334444455555


Q ss_pred             EEccCCCCCCCCCccccccccCCCCcccEEEccCCCCCCccchhhhcCCCCCCCCCCCCCCcEEEccCCcCCcccchhhh
Q 048351          228 LYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIPKFFQ  307 (850)
Q Consensus       228 L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~  307 (850)
                      |++++|.+++..+..  ..+..+ ++|++|++++|++++..|..         .+..+++|++|++++|++++..|..+.
T Consensus       108 L~L~~n~l~~~~~~~--~~~~~l-~~L~~L~L~~n~l~~~~~~~---------~~~~l~~L~~L~L~~n~l~~~~~~~l~  175 (455)
T 3v47_A          108 LTLTQCNLDGAVLSG--NFFKPL-TSLEMLVLRDNNIKKIQPAS---------FFLNMRRFHVLDLTFNKVKSICEEDLL  175 (455)
T ss_dssp             EECTTSCCBTHHHHS--STTTTC-TTCCEEECCSSBCCSCCCCG---------GGGGCTTCCEEECTTCCBSCCCTTTSG
T ss_pred             EeCCCCCCCccccCc--ccccCc-ccCCEEECCCCccCccCccc---------ccCCCCcccEEeCCCCcccccChhhhh
Confidence            555555444322100  112222 55555555555555432211         034455666666666666655555555


Q ss_pred             cC--CCCcEEEccCCccccccccccccccccccCCCCCChhccCCCCCCEEEccCCcCCCCCchhHhhcC--cCCCEEec
Q 048351          308 NM--FKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAGISDSIPDWFSDTS--HKLADLNF  383 (850)
Q Consensus       308 ~l--~~L~~L~L~~N~l~~~~~~~~~~~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~--~~L~~L~L  383 (850)
                      .+  .+|+.|++++|.+.+..+...         .......+..+++|+.|++++|.+++..|..+....  .+|+.|++
T Consensus       176 ~l~~~~L~~L~l~~n~l~~~~~~~~---------~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l  246 (455)
T 3v47_A          176 NFQGKHFTLLRLSSITLQDMNEYWL---------GWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLIL  246 (455)
T ss_dssp             GGTTCEEEEEECTTCBCTTCSTTCT---------THHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEEC
T ss_pred             ccccccccccccccCcccccchhhc---------cccccccccccceeeeEecCCCcccccchhhhhccccccceeeEee
Confidence            44  456666666666554322110         000001122345566666666666555555544321  34555555


Q ss_pred             ccCcCcccCChhhhhhccCCcCEEEccCCcCcccCCCCCCCCcEEEccCCcCcCccccccccCCCCccEEEccCCCCCCC
Q 048351          384 SHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSLPSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGK  463 (850)
Q Consensus       384 s~N~l~~~~p~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~  463 (850)
                      ++|.+.+....                .+.+.+..+             ..       ......++|++|++++|.+++.
T Consensus       247 ~~~~~~~~~~~----------------~~~~~~~~~-------------~~-------~~~~~~~~L~~L~l~~n~l~~~  290 (455)
T 3v47_A          247 SNSYNMGSSFG----------------HTNFKDPDN-------------FT-------FKGLEASGVKTCDLSKSKIFAL  290 (455)
T ss_dssp             TTCTTTSCCTT----------------CCSSCCCCT-------------TT-------TGGGTTSCCCEEECCSSCCCEE
T ss_pred             ccccccccccc----------------hhhhccCcc-------------cc-------cccccccCceEEEecCcccccc
Confidence            55544322110                001110000             00       0011236899999999999998


Q ss_pred             CCcccccCCCCCEEEcCCCcccccCCCccccccCccEEeccCCccccCCchhhcCCCCcCeeccccccceeecchhHHhc
Q 048351          464 LPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGES  543 (850)
Q Consensus       464 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~  543 (850)
                      .|..+..+++|++|++++|.+++..|..|..+++|++|++++|++++..|..+.++++|++|++++|++++..|..+. .
T Consensus       291 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~  369 (455)
T 3v47_A          291 LKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFL-G  369 (455)
T ss_dssp             CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTT-T
T ss_pred             chhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcc-c
Confidence            999999999999999999999998899999999999999999999988899999999999999999999976677776 6


Q ss_pred             CCCCCEEEccCCccccccCcCcCCCCCcceeecccccCcccCC
Q 048351          544 LLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIP  586 (850)
Q Consensus       544 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p  586 (850)
                      +++|++|++++|++++..+..+..+++|++|++++|++++..|
T Consensus       370 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          370 LPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             cccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence            9999999999999998777778999999999999999998777

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=1.7e-39  Score=348.06  Aligned_cols=293  Identities=28%  Similarity=0.402  Sum_probs=207.6

Q ss_pred             CCcHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCcc--ccceEecCCC--CCEEEEEcCCCCCcccchhhhhccCCCC
Q 048351           34 RCIEEERKALLKFKQGLVDEFGFLSSWGSEGEKKDCCN--WRGVRCSNQT--GHVKVLDLHGTGRVKVLDIQTRVMSGNA  109 (850)
Q Consensus        34 ~~~~~~~~~Ll~~k~~~~~~~~~l~~W~~~~~~~~~c~--w~gv~C~~~~--~~v~~l~L~~~~~l~~l~l~~~~~~~~~  109 (850)
                      .|.++|++||++||+++.+|. .+++|.   .+++||.  |.||+|+...  ++|+.++|++                 +
T Consensus         2 ~c~~~~~~aL~~~k~~~~~~~-~l~~W~---~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~-----------------~   60 (313)
T 1ogq_A            2 LCNPQDKQALLQIKKDLGNPT-TLSSWL---PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSG-----------------L   60 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCG-GGTTCC---TTSCTTTTCSTTEEECCSSSCCCEEEEEEEC-----------------C
T ss_pred             CCCHHHHHHHHHHHHhcCCcc-cccCCC---CCCCCCcCCCcceEeCCCCCCceEEEEECCC-----------------C
Confidence            599999999999999998876 788997   4678998  9999998654  8999999998                 5


Q ss_pred             CCcc--cccccccCCCCCCEEeCCC-CCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCcccCCCCCCcEEEccCCCCCC
Q 048351          110 SLRG--TLNPALLKLHYLRHLDLSF-NNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLR  186 (850)
Q Consensus       110 ~l~g--~l~~~l~~l~~L~~L~Ls~-n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  186 (850)
                      .+.|  .+|+++.++++|++|+|++ |.+.+. +|..++++++|++|+|++|.+++.+|..|+++++|++|++++|++. 
T Consensus        61 ~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~-  138 (313)
T 1ogq_A           61 NLPKPYPIPSSLANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALS-  138 (313)
T ss_dssp             CCSSCEECCGGGGGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEE-
T ss_pred             CccCCcccChhHhCCCCCCeeeCCCCCccccc-CChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccC-
Confidence            7888  8999999999999999995 999986 9999999999999999999999999999999999999999999863 


Q ss_pred             CCCccccccCCCccEEeCCCCCCCCCcchhhhhcCCC-CCcEEEccCCCCCCCCCccccccccCCCCcccEEEccCCCCC
Q 048351          187 AGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIP-SLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLT  265 (850)
Q Consensus       187 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~  265 (850)
                      ...+..+..+++|++|++++|++++.  ++..+..++ +|++|++++|.+++..+    ..+... + |++|++++|+++
T Consensus       139 ~~~p~~~~~l~~L~~L~L~~N~l~~~--~p~~l~~l~~~L~~L~L~~N~l~~~~~----~~~~~l-~-L~~L~Ls~N~l~  210 (313)
T 1ogq_A          139 GTLPPSISSLPNLVGITFDGNRISGA--IPDSYGSFSKLFTSMTISRNRLTGKIP----PTFANL-N-LAFVDLSRNMLE  210 (313)
T ss_dssp             SCCCGGGGGCTTCCEEECCSSCCEEE--CCGGGGCCCTTCCEEECCSSEEEEECC----GGGGGC-C-CSEEECCSSEEE
T ss_pred             CcCChHHhcCCCCCeEECcCCcccCc--CCHHHhhhhhcCcEEECcCCeeeccCC----hHHhCC-c-ccEEECcCCccc
Confidence            23445677788888888888877643  455666665 66666666666665444    333333 3 666666666555


Q ss_pred             CccchhhhcCCCCCCCCCCCCCCcEEEccCCcCCcccchhhhcCCCCcEEEccCCccccccccccccccccccCCCCCCh
Q 048351          266 ASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPK  345 (850)
Q Consensus       266 ~~~~~~l~~l~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~~~l~~~~p~  345 (850)
                      +.+          |..+..+++|++|++++|++++.+|. +..+++|++|++++|++++.+|.                 
T Consensus       211 ~~~----------~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~-----------------  262 (313)
T 1ogq_A          211 GDA----------SVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQ-----------------  262 (313)
T ss_dssp             ECC----------GGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCG-----------------
T ss_pred             CcC----------CHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCCh-----------------
Confidence            442          22344555566666666665544443 45555555555555555543332                 


Q ss_pred             hccCCCCCCEEEccCCcCCCCCchhHhhcCcCCCEEecccCc
Q 048351          346 WLQTQKHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQ  387 (850)
Q Consensus       346 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~N~  387 (850)
                      ++..+++|+.|++++|.+++.+|..  ..+++|+.+++++|+
T Consensus       263 ~l~~l~~L~~L~Ls~N~l~~~ip~~--~~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          263 GLTQLKFLHSLNVSFNNLCGEIPQG--GNLQRFDVSAYANNK  302 (313)
T ss_dssp             GGGGCTTCCEEECCSSEEEEECCCS--TTGGGSCGGGTCSSS
T ss_pred             HHhcCcCCCEEECcCCcccccCCCC--ccccccChHHhcCCC
Confidence            2455555555555555555554443  222345555555554

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=6e-38  Score=352.78  Aligned_cols=382  Identities=23%  Similarity=0.335  Sum_probs=241.7

Q ss_pred             CCCcccccccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCC-------------CEEeCCCCCCCCCCCcccCCCCCCc
Q 048351          109 ASLRGTLNPALLKLHYLRHLDLSFNNFSGSQIPMFIGSLSKL-------------EYLDLFAASFSGPIPPLLGNLSRLQ  175 (850)
Q Consensus       109 ~~l~g~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L-------------~~L~Ls~n~l~~~~p~~l~~l~~L~  175 (850)
                      +.+ |.+|++++++++|++|++++|.++|. +|..++++++|             ++|++++|.+++ +|..   .++|+
T Consensus        21 n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~-~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~~---~~~L~   94 (454)
T 1jl5_A           21 SNL-TEMPVEAENVKSKTEYYNAWSEWERN-APPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPEL---PPHLE   94 (454)
T ss_dssp             --------------CCHHHHHHHHHHHHHT-SCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCSC---CTTCS
T ss_pred             Cch-hhCChhHhcccchhhhhccCCccccc-CCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CCCC---cCCCC
Confidence            466 88999999999999999999999885 89999988865             999999999886 4442   37899


Q ss_pred             EEEccCCCCCCCCCccccccCCCccEEeCCCCCCCCCcchhhhhcCCCCCcEEEccCCCCCCCCCccccccccCCCCccc
Q 048351          176 YLSLGYNKLLRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLE  255 (850)
Q Consensus       176 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~  255 (850)
                      +|++++|++...  +.   .+++|++|++++|++++.+..+      ++|++|++++|.+++. |     ++.++ ++|+
T Consensus        95 ~L~l~~n~l~~l--p~---~~~~L~~L~l~~n~l~~l~~~~------~~L~~L~L~~n~l~~l-p-----~~~~l-~~L~  156 (454)
T 1jl5_A           95 SLVASCNSLTEL--PE---LPQSLKSLLVDNNNLKALSDLP------PLLEYLGVSNNQLEKL-P-----ELQNS-SFLK  156 (454)
T ss_dssp             EEECCSSCCSSC--CC---CCTTCCEEECCSSCCSCCCSCC------TTCCEEECCSSCCSSC-C-----CCTTC-TTCC
T ss_pred             EEEccCCcCCcc--cc---ccCCCcEEECCCCccCcccCCC------CCCCEEECcCCCCCCC-c-----ccCCC-CCCC
Confidence            999999986442  21   2478999999999888754321      6889999999988873 3     34555 8899


Q ss_pred             EEEccCCCCCCccchhhhcCCCCCCCCCCCCCCcEEEccCCcCCcccchhhhcCCCCcEEEccCCccccccccccccccc
Q 048351          256 TLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFS  335 (850)
Q Consensus       256 ~L~Ls~N~l~~~~~~~l~~l~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~  335 (850)
                      +|++++|++++           +|..+   .+|++|++++|++++ +| .++++++|++|++++|++++. |.       
T Consensus       157 ~L~l~~N~l~~-----------lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l-~~-------  212 (454)
T 1jl5_A          157 IIDVDNNSLKK-----------LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKL-PD-------  212 (454)
T ss_dssp             EEECCSSCCSC-----------CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSC-CC-------
T ss_pred             EEECCCCcCcc-----------cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcC-CC-------
Confidence            99999998876           33322   488999999999886 56 588889999999999988753 21       


Q ss_pred             cccCCCCCChhccCCCCCCEEEccCCcCCCCCchhHhhcCcCCCEEecccCcCcccCChhhhhhccCCcCEEEccCCcCc
Q 048351          336 YLKMGPHFPKWLQTQKHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLE  415 (850)
Q Consensus       336 ~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~l~~N~l~  415 (850)
                                   ..++|+.|++++|.++ .+|. +. .+++|++|++++|++++ +|...     .+++.|++++|+++
T Consensus       213 -------------~~~~L~~L~l~~n~l~-~lp~-~~-~l~~L~~L~l~~N~l~~-l~~~~-----~~L~~L~l~~N~l~  270 (454)
T 1jl5_A          213 -------------LPLSLESIVAGNNILE-ELPE-LQ-NLPFLTTIYADNNLLKT-LPDLP-----PSLEALNVRDNYLT  270 (454)
T ss_dssp             -------------CCTTCCEEECCSSCCS-SCCC-CT-TCTTCCEEECCSSCCSS-CCSCC-----TTCCEEECCSSCCS
T ss_pred             -------------CcCcccEEECcCCcCC-cccc-cC-CCCCCCEEECCCCcCCc-ccccc-----cccCEEECCCCccc
Confidence                         1247888888888887 4553 43 34678888888888875 44433     67788888888887


Q ss_pred             ccCCCCCCCCcEEEccCCcCcCccccccccCCCCccEEEccCCCCCCCCCcccccC-CCCCEEEcCCCcccccCCCcccc
Q 048351          416 GPSPSLPSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQF-NMLRILNLANNNFSGKIPNSCGY  494 (850)
Q Consensus       416 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l-~~L~~L~Ls~N~l~~~~p~~~~~  494 (850)
                      + +|..+++|++|++++|.+++... .    .++|++|++++|.+++ ++    .+ ++|++|++++|++++ +|..   
T Consensus       271 ~-l~~~~~~L~~L~ls~N~l~~l~~-~----~~~L~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~~-lp~~---  335 (454)
T 1jl5_A          271 D-LPELPQSLTFLDVSENIFSGLSE-L----PPNLYYLNASSNEIRS-LC----DLPPSLEELNVSNNKLIE-LPAL---  335 (454)
T ss_dssp             C-CCCCCTTCCEEECCSSCCSEESC-C----CTTCCEEECCSSCCSE-EC----CCCTTCCEEECCSSCCSC-CCCC---
T ss_pred             c-cCcccCcCCEEECcCCccCcccC-c----CCcCCEEECcCCcCCc-cc----CCcCcCCEEECCCCcccc-cccc---
Confidence            6 45556778888888888776321 1    1567888888887774 22    22 477888888888775 5543   


Q ss_pred             ccCccEEeccCCccccCCchhhcCCCCcCeecccccccee--ecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcc
Q 048351          495 LQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISG--NIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQ  572 (850)
Q Consensus       495 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~--~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~  572 (850)
                      +++|++|++++|+++ .+|.   .+++|++|++++|++++  .+|.++.       .  ++.|.+.+.+|..   +++|+
T Consensus       336 ~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~-------~--L~~n~~~~~i~~~---~~~L~  399 (454)
T 1jl5_A          336 PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVE-------D--LRMNSHLAEVPEL---PQNLK  399 (454)
T ss_dssp             CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCC-------E--EECCC----------------
T ss_pred             CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHH-------h--hhhcccccccccc---cCcCC
Confidence            467888888888877 4555   46778888888888875  5555432       1  2335555555542   35677


Q ss_pred             eeecccccCcc--cCCccccC
Q 048351          573 ILDLSLNNISG--NIPKCFNN  591 (850)
Q Consensus       573 ~L~Ls~N~l~~--~~p~~~~~  591 (850)
                      .|++++|++++  .+|..+..
T Consensus       400 ~L~ls~N~l~~~~~iP~sl~~  420 (454)
T 1jl5_A          400 QLHVETNPLREFPDIPESVED  420 (454)
T ss_dssp             ---------------------
T ss_pred             EEECCCCcCCccccchhhHhh
Confidence            77777777776  56655443

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=2.7e-36  Score=339.62  Aligned_cols=367  Identities=20%  Similarity=0.189  Sum_probs=292.9

Q ss_pred             CcccccccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCCc
Q 048351          111 LRGTLNPALLKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAGNL  190 (850)
Q Consensus       111 l~g~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~  190 (850)
                      ..+..+.+++++++|++|++++|.+++  +| .++.+++|++|+|++|.+++. |  ++.+++|++|++++|++...   
T Consensus        30 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~---  100 (457)
T 3bz5_A           30 MQATDTISEEQLATLTSLDCHNSSITD--MT-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL---  100 (457)
T ss_dssp             CCTTSEEEHHHHTTCCEEECCSSCCCC--CT-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC---
T ss_pred             cCcccccChhHcCCCCEEEccCCCccc--Ch-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee---
Confidence            344556678999999999999999996  45 688999999999999999974 4  89999999999999997543   


Q ss_pred             cccccCCCccEEeCCCCCCCCCcchhhhhcCCCCCcEEEccCCCCCCCCCccccccccCCCCcccEEEccCCCCCCccch
Q 048351          191 DWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYP  270 (850)
Q Consensus       191 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~  270 (850)
                      + ++++++|++|++++|++++.   +  ++.+++|++|++++|.+++.       .+..+ ++|++|++++|+..+.+  
T Consensus       101 ~-~~~l~~L~~L~L~~N~l~~l---~--~~~l~~L~~L~l~~N~l~~l-------~l~~l-~~L~~L~l~~n~~~~~~--  164 (457)
T 3bz5_A          101 D-VTPLTKLTYLNCDTNKLTKL---D--VSQNPLLTYLNCARNTLTEI-------DVSHN-TQLTELDCHLNKKITKL--  164 (457)
T ss_dssp             C-CTTCTTCCEEECCSSCCSCC---C--CTTCTTCCEEECTTSCCSCC-------CCTTC-TTCCEEECTTCSCCCCC--
T ss_pred             e-cCCCCcCCEEECCCCcCCee---c--CCCCCcCCEEECCCCcccee-------ccccC-CcCCEEECCCCCccccc--
Confidence            2 88999999999999999985   2  78999999999999999874       23445 89999999999765542  


Q ss_pred             hhhcCCCCCCCCCCCCCCcEEEccCCcCCcccchhhhcCCCCcEEEccCCccccccccccccccccccCCCCCChhccCC
Q 048351          271 WLFNVSSIPDAPGPMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQ  350 (850)
Q Consensus       271 ~l~~l~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~~~l~~~~p~~l~~l  350 (850)
                                .++.+++|++|++++|++++ +|  +..+++|+.|++++|++++. +                   +..+
T Consensus       165 ----------~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~-~-------------------l~~l  211 (457)
T 3bz5_A          165 ----------DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL-D-------------------LNQN  211 (457)
T ss_dssp             ----------CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC-C-------------------CTTC
T ss_pred             ----------ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee-c-------------------cccC
Confidence                      26788999999999999997 45  88999999999999998864 1                   6778


Q ss_pred             CCCCEEEccCCcCCCCCchhHhhcCcCCCEEecccCcCcccCChhhhhhccCCcCEEEccCCcCcccCCCCCCCCcEEEc
Q 048351          351 KHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSLPSNAFYIDL  430 (850)
Q Consensus       351 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~L~~L~L  430 (850)
                      ++|+.|++++|++++ +|  +. .+++|++|++++|++++..+..+     .+++.|+++.|+           ++.+++
T Consensus       212 ~~L~~L~Ls~N~l~~-ip--~~-~l~~L~~L~l~~N~l~~~~~~~l-----~~L~~L~l~~n~-----------L~~L~l  271 (457)
T 3bz5_A          212 IQLTFLDCSSNKLTE-ID--VT-PLTQLTYFDCSVNPLTELDVSTL-----SKLTTLHCIQTD-----------LLEIDL  271 (457)
T ss_dssp             TTCSEEECCSSCCSC-CC--CT-TCTTCSEEECCSSCCSCCCCTTC-----TTCCEEECTTCC-----------CSCCCC
T ss_pred             CCCCEEECcCCcccc-cC--cc-ccCCCCEEEeeCCcCCCcCHHHC-----CCCCEEeccCCC-----------CCEEEC
Confidence            999999999999998 45  33 34789999999999987655444     778888887764           456778


Q ss_pred             cCCcCcCccccccccCCCCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCCCccccccCccEEeccCCcccc
Q 048351          431 SKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSG  510 (850)
Q Consensus       431 s~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  510 (850)
                      ++|.+.+.++.   ..+++|+.|++++|...+.+|.   ..++|+.|++++|             ++|++|++++|++++
T Consensus       272 ~~n~~~~~~~~---~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~-------------~~L~~L~L~~N~l~~  332 (457)
T 3bz5_A          272 THNTQLIYFQA---EGCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQN-------------PKLVYLYLNNTELTE  332 (457)
T ss_dssp             TTCTTCCEEEC---TTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC-------------TTCCEEECTTCCCSC
T ss_pred             CCCccCCcccc---cccccCCEEECCCCcccceecc---CCCcceEechhhc-------------ccCCEEECCCCcccc
Confidence            88887776653   2457888888888887766663   3445555555544             678889999999887


Q ss_pred             CCchhhcCCCCcCeeccccccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccCcccCCcccc
Q 048351          511 ELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFN  590 (850)
Q Consensus       511 ~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~  590 (850)
                      . +  +..+++|+.|++++|++++         ++.|..|++++|.+.|.     +.+..|+.+++++|+++|.+|..+.
T Consensus       333 l-~--l~~l~~L~~L~l~~N~l~~---------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~~  395 (457)
T 3bz5_A          333 L-D--VSHNTKLKSLSCVNAHIQD---------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDLL  395 (457)
T ss_dssp             C-C--CTTCTTCSEEECCSSCCCB---------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTCB
T ss_pred             c-c--cccCCcCcEEECCCCCCCC---------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChhHh
Confidence            3 3  7888899999999998873         34566677888888876     3456788889999999999987653


Q ss_pred             C
Q 048351          591 N  591 (850)
Q Consensus       591 ~  591 (850)
                      .
T Consensus       396 ~  396 (457)
T 3bz5_A          396 D  396 (457)
T ss_dssp             C
T ss_pred             c
Confidence            3

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=5.9e-36  Score=336.83  Aligned_cols=360  Identities=21%  Similarity=0.193  Sum_probs=206.1

Q ss_pred             CCcccCCCCCCCEEeCCCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCCccccccCCCccEEeCCCCCCCCCcchhhhh
Q 048351          140 IPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEV  219 (850)
Q Consensus       140 ~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l  219 (850)
                      .+..++++++|++|++++|.+++. | .++.+++|++|++++|++...   + ++.+++|++|++++|++++.     .+
T Consensus        34 ~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~---~-~~~l~~L~~L~Ls~N~l~~~-----~~  102 (457)
T 3bz5_A           34 DTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL---D-LSQNTNLTYLACDSNKLTNL-----DV  102 (457)
T ss_dssp             SEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC---C-CTTCTTCSEEECCSSCCSCC-----CC
T ss_pred             cccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE---c-cccCCCCCEEECcCCCCcee-----ec
Confidence            445667788888888888888764 4 577777777777777775332   1 56666666666666666653     14


Q ss_pred             cCCCCCcEEEccCCCCCCCCCccccccccCCCCcccEEEccCCCCCCccchhhhcCCCCCCCCCCCCCCcEEEccCCcCC
Q 048351          220 DKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELD  299 (850)
Q Consensus       220 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~ip~~l~~l~~L~~L~Ls~N~l~  299 (850)
                      +.+++|++|++++|.+++.                                        |  ++.+++|++|++++|+++
T Consensus       103 ~~l~~L~~L~L~~N~l~~l----------------------------------------~--~~~l~~L~~L~l~~N~l~  140 (457)
T 3bz5_A          103 TPLTKLTYLNCDTNKLTKL----------------------------------------D--VSQNPLLTYLNCARNTLT  140 (457)
T ss_dssp             TTCTTCCEEECCSSCCSCC----------------------------------------C--CTTCTTCCEEECTTSCCS
T ss_pred             CCCCcCCEEECCCCcCCee----------------------------------------c--CCCCCcCCEEECCCCccc
Confidence            4455555555555544432                                        1  333444444444444444


Q ss_pred             cccchhhhcCCCCcEEEccCCccccccccccccccccccCCCCCChhccCCCCCCEEEccCCcCCCCCchhHhhcCcCCC
Q 048351          300 GEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAGISDSIPDWFSDTSHKLA  379 (850)
Q Consensus       300 ~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~  379 (850)
                      +. +  ++++++|++|++++|...+.++                   +..+++|+.|++++|.+++. |  +. .+++|+
T Consensus       141 ~l-~--l~~l~~L~~L~l~~n~~~~~~~-------------------~~~l~~L~~L~ls~n~l~~l-~--l~-~l~~L~  194 (457)
T 3bz5_A          141 EI-D--VSHNTQLTELDCHLNKKITKLD-------------------VTPQTQLTTLDCSFNKITEL-D--VS-QNKLLN  194 (457)
T ss_dssp             CC-C--CTTCTTCCEEECTTCSCCCCCC-------------------CTTCTTCCEEECCSSCCCCC-C--CT-TCTTCC
T ss_pred             ee-c--cccCCcCCEEECCCCCcccccc-------------------cccCCcCCEEECCCCcccee-c--cc-cCCCCC
Confidence            32 1  4444455555555443222111                   23334444444444443331 1  11 112333


Q ss_pred             EEecccCcCcccCChhhhhhccCCcCEEEccCCcCcccCCCCCCCCcEEEccCCcCcCccccccccCCCCccEEEccCCC
Q 048351          380 DLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSLPSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNL  459 (850)
Q Consensus       380 ~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~  459 (850)
                      .|++++|++++. +  +                                                ..+++|++|++++|+
T Consensus       195 ~L~l~~N~l~~~-~--l------------------------------------------------~~l~~L~~L~Ls~N~  223 (457)
T 3bz5_A          195 RLNCDTNNITKL-D--L------------------------------------------------NQNIQLTFLDCSSNK  223 (457)
T ss_dssp             EEECCSSCCSCC-C--C------------------------------------------------TTCTTCSEEECCSSC
T ss_pred             EEECcCCcCCee-c--c------------------------------------------------ccCCCCCEEECcCCc
Confidence            333333333321 0  0                                                022456666666666


Q ss_pred             CCCCCCcccccCCCCCEEEcCCCcccccCCCccccccCccEEeccCCccccCCchhhcCCCCcCeeccccccceeecchh
Q 048351          460 LSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAW  539 (850)
Q Consensus       460 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~  539 (850)
                      +++ +|  +..+++|++|++++|++++..   ++.+++|+.|++++|              +|+.|++++|++.+.+|. 
T Consensus       224 l~~-ip--~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~~-  282 (457)
T 3bz5_A          224 LTE-ID--VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQA-  282 (457)
T ss_dssp             CSC-CC--CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEEC-
T ss_pred             ccc-cC--ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCC--------------CCCEEECCCCccCCcccc-
Confidence            664 34  556666666666666666532   334556666665554              344566666666656652 


Q ss_pred             HHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccCcccCCccccCcccCccccccCccccccccccCCCcccC
Q 048351          540 IGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTML  619 (850)
Q Consensus       540 ~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~  619 (850)
                       . .+++|+.|++++|...+.+|.   ..++|+.|++++|                                        
T Consensus       283 -~-~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~----------------------------------------  317 (457)
T 3bz5_A          283 -E-GCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQN----------------------------------------  317 (457)
T ss_dssp             -T-TCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC----------------------------------------
T ss_pred             -c-ccccCCEEECCCCcccceecc---CCCcceEechhhc----------------------------------------
Confidence             1 456666666666665555543   2344444444443                                        


Q ss_pred             ccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCCCccccccCCCCeeeC
Q 048351          620 PVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDL  699 (850)
Q Consensus       620 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~L  699 (850)
                                              +.|+.|++++|++++. +  ++.+++|+.|++++|++++.        +.|+.|++
T Consensus       318 ------------------------~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~l--------~~L~~L~l  362 (457)
T 3bz5_A          318 ------------------------PKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQDF--------SSVGKIPA  362 (457)
T ss_dssp             ------------------------TTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCBC--------TTGGGSSG
T ss_pred             ------------------------ccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCCc--------cccccccc
Confidence                                    2237888888888874 3  78888888899998888862        56777888


Q ss_pred             CCCcCcccCcccccCCCCCCEEEcCCCcCcccCCCC
Q 048351          700 SRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGKIPTG  735 (850)
Q Consensus       700 s~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~  735 (850)
                      ++|+++|.     ..+..|..+++++|+++|.||..
T Consensus       363 ~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~  393 (457)
T 3bz5_A          363 LNNNFEAE-----GQTITMPKETLTNNSLTIAVSPD  393 (457)
T ss_dssp             GGTSEEEE-----EEEEECCCBCCBTTBEEEECCTT
T ss_pred             cCCcEEec-----ceeeecCccccccCcEEEEcChh
Confidence            88888876     23456777889999999998864

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=9.3e-36  Score=339.59  Aligned_cols=347  Identities=18%  Similarity=0.170  Sum_probs=214.0

Q ss_pred             cEEEccCCCCCCccchhhhcCCCCCCCCCCCCCCcEEEccCCcCCcccchhhhcCCCCcEEEccCCcccccccccccccc
Q 048351          255 ETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNF  334 (850)
Q Consensus       255 ~~L~Ls~N~l~~~~~~~l~~l~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l  334 (850)
                      +.++.++++++.           +|..+.  +++++|+|++|++++..|..|.++++|++|+|++|.+++..+..     
T Consensus        14 ~~v~c~~~~l~~-----------ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~-----   75 (477)
T 2id5_A           14 RAVLCHRKRFVA-----------VPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGA-----   75 (477)
T ss_dssp             TEEECCSCCCSS-----------CCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTT-----
T ss_pred             CEEEeCCCCcCc-----------CCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhh-----
Confidence            456666666653           444332  46778888888887766777777777888888777776654432     


Q ss_pred             ccccCCCCCChhccCCCCCCEEEccCCcCCCCCchhHhhcCcCCCEEecccCcCcccCChhhhhhccCCcCEEEccCCcC
Q 048351          335 SYLKMGPHFPKWLQTQKHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHL  414 (850)
Q Consensus       335 ~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~l~~N~l  414 (850)
                                  |.++++|++|++++|.+++..+..|.                                          
T Consensus        76 ------------~~~l~~L~~L~L~~n~l~~~~~~~~~------------------------------------------  101 (477)
T 2id5_A           76 ------------FNNLFNLRTLGLRSNRLKLIPLGVFT------------------------------------------  101 (477)
T ss_dssp             ------------TTTCTTCCEEECCSSCCCSCCTTSST------------------------------------------
T ss_pred             ------------hhCCccCCEEECCCCcCCccCccccc------------------------------------------
Confidence                        44555555555555544432221111                                          


Q ss_pred             cccCCCCCCCCcEEEccCCcCcCccccccccCCCCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCCCcccc
Q 048351          415 EGPSPSLPSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGY  494 (850)
Q Consensus       415 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  494 (850)
                                                     .+++|++|++++|.+.+..|..|..+++|++|++++|.+++..+..|..
T Consensus       102 -------------------------------~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  150 (477)
T 2id5_A          102 -------------------------------GLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSG  150 (477)
T ss_dssp             -------------------------------TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTT
T ss_pred             -------------------------------CCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccC
Confidence                                           1245555666666655555555666666666666666666655666666


Q ss_pred             ccCccEEeccCCccccCCchhhcCCCCcCeeccccccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCccee
Q 048351          495 LQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQIL  574 (850)
Q Consensus       495 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L  574 (850)
                      +++|++|++++|++++..+..+..+++|+.|++++|.+.+..+..+ ..+++|++|++++|.+.+.+|.......+|+.|
T Consensus       151 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  229 (477)
T 2id5_A          151 LNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSF-KRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSL  229 (477)
T ss_dssp             CTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCS-CSCTTCCEEEEECCTTCCEECTTTTTTCCCSEE
T ss_pred             CCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhc-ccCcccceeeCCCCccccccCcccccCccccEE
Confidence            6666666666666665555556666666666666666663333233 356666666666666666666555555567777


Q ss_pred             ecccccCcccCCccccCcccCccccccCccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCC
Q 048351          575 DLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSN  654 (850)
Q Consensus       575 ~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N  654 (850)
                      ++++|++++..+..+.++++|                                                   +.|+|++|
T Consensus       230 ~l~~n~l~~~~~~~~~~l~~L---------------------------------------------------~~L~Ls~n  258 (477)
T 2id5_A          230 SITHCNLTAVPYLAVRHLVYL---------------------------------------------------RFLNLSYN  258 (477)
T ss_dssp             EEESSCCCSCCHHHHTTCTTC---------------------------------------------------CEEECCSS
T ss_pred             ECcCCcccccCHHHhcCcccc---------------------------------------------------CeeECCCC
Confidence            777777664332344443333                                                   66777777


Q ss_pred             CCCCCChhhhhccccCCeEecCCCcCccCCCccccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCCcCcccCCC
Q 048351          655 KLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGKIPT  734 (850)
Q Consensus       655 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~  734 (850)
                      ++++..+..|..+++|+.|+|++|++++..|..|.++++|+.|||++|++++..+..|..+++|++|++++|++++..+.
T Consensus       259 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~  338 (477)
T 2id5_A          259 PISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRL  338 (477)
T ss_dssp             CCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGG
T ss_pred             cCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccch
Confidence            77766666677777777777777777777777777777777777777777776666777777777777777777765432


Q ss_pred             CCcCCCcCccccCCCCCCCCCC
Q 048351          735 GTQLQSFNASVYDGNPELCGLP  756 (850)
Q Consensus       735 ~~~~~~~~~~~~~gN~~lc~~~  756 (850)
                      ...+.......+.++...|..|
T Consensus       339 ~~~~~~~~~~~~~~~~~~C~~p  360 (477)
T 2id5_A          339 LWVFRRRWRLNFNRQQPTCATP  360 (477)
T ss_dssp             HHHHTTTTSSCCTTCCCBEEES
T ss_pred             HhHHhhhhccccCccCceeCCc
Confidence            2222222223455666666443

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=2.6e-34  Score=326.15  Aligned_cols=106  Identities=17%  Similarity=0.217  Sum_probs=78.6

Q ss_pred             cCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCCccccccCCCc
Q 048351          120 LKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAGNLDWISQLFSL  199 (850)
Q Consensus       120 ~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L  199 (850)
                      ..+++++.|+++++.+..  +|. +..+++|++|+|++|.+++..|  +.++++|++|++++|++...  + .+.++++|
T Consensus        43 ~~l~~l~~L~l~~~~i~~--l~~-~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~-~~~~l~~L  114 (466)
T 1o6v_A           43 TDLDQVTTLQADRLGIKS--IDG-VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADI--T-PLANLTNL  114 (466)
T ss_dssp             HHHHTCCEEECCSSCCCC--CTT-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--G-GGTTCTTC
T ss_pred             hHhccccEEecCCCCCcc--Ccc-hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccC--h-hhcCCCCC
Confidence            456789999999999884  564 6779999999999999986544  88899999999988876322  1 27777788


Q ss_pred             cEEeCCCCCCCCCcchhhhhcCCCCCcEEEccCCCCCC
Q 048351          200 RYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQL  237 (850)
Q Consensus       200 ~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~  237 (850)
                      ++|++++|.+++.+    .+..+++|++|++++|.+.+
T Consensus       115 ~~L~L~~n~l~~~~----~~~~l~~L~~L~l~~n~l~~  148 (466)
T 1o6v_A          115 TGLTLFNNQITDID----PLKNLTNLNRLELSSNTISD  148 (466)
T ss_dssp             CEEECCSSCCCCCG----GGTTCTTCSEEEEEEEEECC
T ss_pred             CEEECCCCCCCCCh----HHcCCCCCCEEECCCCccCC
Confidence            88888877777642    25666666666666666554

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=5e-36  Score=321.03  Aligned_cols=259  Identities=33%  Similarity=0.535  Sum_probs=243.5

Q ss_pred             CCccEEEccCCCCCC--CCCcccccCCCCCEEEcCC-CcccccCCCccccccCccEEeccCCccccCCchhhcCCCCcCe
Q 048351          448 QNLVYLDLSSNLLSG--KLPDCWLQFNMLRILNLAN-NNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRV  524 (850)
Q Consensus       448 ~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  524 (850)
                      .+++.|++++|.+++  .+|..+.++++|++|++++ |.+.+.+|..++.+++|++|++++|++++.+|..+..+++|++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            579999999999998  8999999999999999995 9999999999999999999999999999999999999999999


Q ss_pred             eccccccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCC-CcceeecccccCcccCCccccCcccCccccccCc
Q 048351          525 VALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLA-DIQILDLSLNNISGNIPKCFNNFTAMTQERSYNS  603 (850)
Q Consensus       525 L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~  603 (850)
                      |++++|.+++.+|..+. .+++|++|++++|++++.+|..+..++ +|++|++++|++++.+|..+..++ |        
T Consensus       130 L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L--------  199 (313)
T 1ogq_A          130 LDFSYNALSGTLPPSIS-SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-L--------  199 (313)
T ss_dssp             EECCSSEEESCCCGGGG-GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-C--------
T ss_pred             EeCCCCccCCcCChHHh-cCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-c--------
Confidence            99999999989998887 699999999999999999999999998 999999999999999998776554 3        


Q ss_pred             cccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccC
Q 048351          604 SAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGY  683 (850)
Q Consensus       604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~  683 (850)
                                                                 +.|+|++|++++.+|..+..+++|+.|+|++|++++.
T Consensus       200 -------------------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  236 (313)
T 1ogq_A          200 -------------------------------------------AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFD  236 (313)
T ss_dssp             -------------------------------------------SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCB
T ss_pred             -------------------------------------------cEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeee
Confidence                                                       8999999999999999999999999999999999987


Q ss_pred             CCccccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCCcCcccCCCCCcCCCcCccccCCCCCCCCCCCCCCC
Q 048351          684 ITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGKIPTGTQLQSFNASVYDGNPELCGLPLPSKC  761 (850)
Q Consensus       684 ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~lc~~~~~~~c  761 (850)
                      +|. +..+++|++|+|++|++++.+|..+..+++|++|++++|+++|.+|...++..+....+.|||++||.|+. .|
T Consensus       237 ~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~~-~C  312 (313)
T 1ogq_A          237 LGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-AC  312 (313)
T ss_dssp             GGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred             cCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCCCCC-CC
Confidence            766 88899999999999999999999999999999999999999999999988899999999999999998875 56

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=5.9e-34  Score=323.20  Aligned_cols=216  Identities=26%  Similarity=0.362  Sum_probs=178.0

Q ss_pred             CCCCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCCCccccccCccEEeccCCccccCCchhhcCCCCcCee
Q 048351          446 SGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVV  525 (850)
Q Consensus       446 ~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  525 (850)
                      .+++|++|++++|.+++.  ..+..+++|++|++++|.+++..|  ++.+++|++|++++|++++.  ..+..+++|+.|
T Consensus       175 ~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L  248 (466)
T 1o6v_A          175 NLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDL  248 (466)
T ss_dssp             TCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEE
T ss_pred             cCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEE
Confidence            347788888888888743  347888889999999988886655  67788899999999988753  357888999999


Q ss_pred             ccccccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccCcccCCccccCcccCccccccCccc
Q 048351          526 ALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSA  605 (850)
Q Consensus       526 ~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~  605 (850)
                      ++++|++++..|  +. .+++|++|++++|.+++..+  +..+++|+.|++++|++++..|  +..+             
T Consensus       249 ~l~~n~l~~~~~--~~-~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l-------------  308 (466)
T 1o6v_A          249 DLANNQISNLAP--LS-GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNL-------------  308 (466)
T ss_dssp             ECCSSCCCCCGG--GT-TCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGC-------------
T ss_pred             ECCCCccccchh--hh-cCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCC-------------
Confidence            999999985443  33 68999999999999986554  7889999999999999886433  3333             


Q ss_pred             cccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCCC
Q 048351          606 ITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYIT  685 (850)
Q Consensus       606 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip  685 (850)
                                                            +.|+.|+|++|++++..|  +..+++|+.|++++|++++.  
T Consensus       309 --------------------------------------~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--  346 (466)
T 1o6v_A          309 --------------------------------------KNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--  346 (466)
T ss_dssp             --------------------------------------TTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--
T ss_pred             --------------------------------------CCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--
Confidence                                                  344899999999998776  78999999999999999976  


Q ss_pred             ccccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCCcCccc
Q 048351          686 PKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGK  731 (850)
Q Consensus       686 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~  731 (850)
                      +.++++++|+.|++++|++++.+|  +..+++|++|++++|++++.
T Consensus       347 ~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~  390 (466)
T 1o6v_A          347 SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA  390 (466)
T ss_dssp             GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred             hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCC
Confidence            579999999999999999998887  89999999999999999973

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=3.3e-33  Score=318.56  Aligned_cols=323  Identities=18%  Similarity=0.180  Sum_probs=258.9

Q ss_pred             CEEEccCCcCCCCCchhHhhcCcCCCEEecccCcCcccCChhhhhhccCCcCEEEccCCcCcccCCCCCCCCcEEEccCC
Q 048351          354 SVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSLPSNAFYIDLSKN  433 (850)
Q Consensus       354 ~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~L~~L~Ls~n  433 (850)
                      +.++.+++.++. +|..+   .++++.|++++|.+++..+..+ ... .+|++|++++|.+++..|..+.          
T Consensus        14 ~~v~c~~~~l~~-ip~~~---~~~l~~L~L~~n~l~~~~~~~~-~~l-~~L~~L~L~~n~i~~~~~~~~~----------   77 (477)
T 2id5_A           14 RAVLCHRKRFVA-VPEGI---PTETRLLDLGKNRIKTLNQDEF-ASF-PHLEELELNENIVSAVEPGAFN----------   77 (477)
T ss_dssp             TEEECCSCCCSS-CCSCC---CTTCSEEECCSSCCCEECTTTT-TTC-TTCCEEECTTSCCCEECTTTTT----------
T ss_pred             CEEEeCCCCcCc-CCCCC---CCCCcEEECCCCccceECHhHc-cCC-CCCCEEECCCCccCEeChhhhh----------
Confidence            456666666653 34332   2356777777777766655555 222 4555555555554443332221          


Q ss_pred             cCcCccccccccCCCCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCCCccccccCccEEeccCCccccCCc
Q 048351          434 KFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELP  513 (850)
Q Consensus       434 ~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p  513 (850)
                                  .+++|++|+|++|.+++..+..|.++++|++|++++|.+++..|..|..+++|++|++++|.+++..+
T Consensus        78 ------------~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  145 (477)
T 2id5_A           78 ------------NLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISH  145 (477)
T ss_dssp             ------------TCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECT
T ss_pred             ------------CCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeCh
Confidence                        45789999999999997777778999999999999999998888899999999999999999998888


Q ss_pred             hhhcCCCCcCeeccccccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccCcccCCccccCcc
Q 048351          514 SLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFT  593 (850)
Q Consensus       514 ~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  593 (850)
                      ..|.++++|++|++++|+++ .+|...+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+.+|.......
T Consensus       146 ~~~~~l~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~  224 (477)
T 2id5_A          146 RAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL  224 (477)
T ss_dssp             TSSTTCTTCCEEEEESCCCS-SCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTC
T ss_pred             hhccCCCCCCEEECCCCcCc-ccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCc
Confidence            89999999999999999998 56665555799999999999999988888899999999999999988777665433222


Q ss_pred             cCccccccCccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeE
Q 048351          594 AMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGL  673 (850)
Q Consensus       594 ~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  673 (850)
                                                                         +|+.|+|++|++++..+..+..+++|+.|
T Consensus       225 ---------------------------------------------------~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  253 (477)
T 2id5_A          225 ---------------------------------------------------NLTSLSITHCNLTAVPYLAVRHLVYLRFL  253 (477)
T ss_dssp             ---------------------------------------------------CCSEEEEESSCCCSCCHHHHTTCTTCCEE
T ss_pred             ---------------------------------------------------cccEEECcCCcccccCHHHhcCccccCee
Confidence                                                               34899999999997777889999999999


Q ss_pred             ecCCCcCccCCCccccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCCcCcccCCCC-CcCCCcCccccCCCCCC
Q 048351          674 NLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGKIPTG-TQLQSFNASVYDGNPEL  752 (850)
Q Consensus       674 ~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~l  752 (850)
                      +|++|++++..+..|..+++|+.|+|++|++++..|..|..+++|++|++++|++++..|.. ..+..+....+.+||+.
T Consensus       254 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  333 (477)
T 2id5_A          254 NLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA  333 (477)
T ss_dssp             ECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred             ECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence            99999999988889999999999999999999999999999999999999999999654432 34456667779999999


Q ss_pred             CCCC
Q 048351          753 CGLP  756 (850)
Q Consensus       753 c~~~  756 (850)
                      |+|+
T Consensus       334 c~c~  337 (477)
T 2id5_A          334 CDCR  337 (477)
T ss_dssp             CSGG
T ss_pred             Cccc
Confidence            9875

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=5.2e-33  Score=308.06  Aligned_cols=312  Identities=21%  Similarity=0.212  Sum_probs=195.7

Q ss_pred             cCCCCCCEEeCCCCCCCCCCCCc-ccCCCCCCCEEeCCCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCCccccccCCC
Q 048351          120 LKLHYLRHLDLSFNNFSGSQIPM-FIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAGNLDWISQLFS  198 (850)
Q Consensus       120 ~~l~~L~~L~Ls~n~l~~~~~p~-~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~  198 (850)
                      ..++++++|++++|.++.  +|. .+..+++|++|+|++|.+++..|..|+.+++|++|++++|.+.. ..+..++++++
T Consensus        42 ~~l~~l~~l~l~~~~l~~--l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~  118 (390)
T 3o6n_A           42 ITLNNQKIVTFKNSTMRK--LPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY-LPPHVFQNVPL  118 (390)
T ss_dssp             GGGCCCSEEEEESCEESE--ECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTT
T ss_pred             cccCCceEEEecCCchhh--CChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCc-CCHHHhcCCCC
Confidence            457899999999999884  555 46789999999999999987777788888888888888887522 22233444444


Q ss_pred             ccEEeCCCCCCCCCcchhhhhcCCCCCcEEEccCCCCCCCCCccccccccCCCCcccEEEccCCCCCCccchhhhcCCCC
Q 048351          199 LRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSI  278 (850)
Q Consensus       199 L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~i  278 (850)
                      |++|++++|.++..                          ++    ..+..+ ++|++|++++|++++.          .
T Consensus       119 L~~L~L~~n~l~~l--------------------------~~----~~~~~l-~~L~~L~L~~n~l~~~----------~  157 (390)
T 3o6n_A          119 LTVLVLERNDLSSL--------------------------PR----GIFHNT-PKLTTLSMSNNNLERI----------E  157 (390)
T ss_dssp             CCEEECCSSCCCCC--------------------------CT----TTTTTC-TTCCEEECCSSCCCBC----------C
T ss_pred             CCEEECCCCccCcC--------------------------CH----HHhcCC-CCCcEEECCCCccCcc----------C
Confidence            44444444444432                          21    111122 4444444444444432          1


Q ss_pred             CCCCCCCCCCcEEEccCCcCCcccchhhhcCCCCcEEEccCCccccccccccccccccccCCCCCChhccCCCCCCEEEc
Q 048351          279 PDAPGPMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDI  358 (850)
Q Consensus       279 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~~~l~~~~p~~l~~l~~L~~L~L  358 (850)
                      |..++.+++|++|++++|++++.   .+..+++|+.|++++|.+++..                                
T Consensus       158 ~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~~~--------------------------------  202 (390)
T 3o6n_A          158 DDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTLA--------------------------------  202 (390)
T ss_dssp             TTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSEEE--------------------------------
T ss_pred             hhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccccccC--------------------------------
Confidence            22344455555555555555532   1334445555555555443210                                


Q ss_pred             cCCcCCCCCchhHhhcCcCCCEEecccCcCcccCChhhhhhccCCcCEEEccCCcCcccCCCCCCCCcEEEccCCcCcCc
Q 048351          359 SSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSLPSNAFYIDLSKNKFSGP  438 (850)
Q Consensus       359 s~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~L~~L~Ls~n~l~~~  438 (850)
                                     ..++|++|++++|.+... |.                         .                  
T Consensus       203 ---------------~~~~L~~L~l~~n~l~~~-~~-------------------------~------------------  223 (390)
T 3o6n_A          203 ---------------IPIAVEELDASHNSINVV-RG-------------------------P------------------  223 (390)
T ss_dssp             ---------------CCSSCSEEECCSSCCCEE-EC-------------------------C------------------
T ss_pred             ---------------CCCcceEEECCCCeeeec-cc-------------------------c------------------
Confidence                           012344455554444321 10                         0                  


Q ss_pred             cccccccCCCCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCCCccccccCccEEeccCCccccCCchhhcC
Q 048351          439 ISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKN  518 (850)
Q Consensus       439 ~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~  518 (850)
                             ..++|++|++++|.+++.  ..+..+++|++|++++|.+++..|..+..+++|++|++++|++++ +|..+..
T Consensus       224 -------~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~  293 (390)
T 3o6n_A          224 -------VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQP  293 (390)
T ss_dssp             -------CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSC
T ss_pred             -------ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCC
Confidence                   014566777777776643  456777777777777777777777777777778888888887774 5556667


Q ss_pred             CCCcCeeccccccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccCccc
Q 048351          519 FTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGN  584 (850)
Q Consensus       519 l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~  584 (850)
                      +++|++|++++|+++ .+|..+. .+++|++|++++|.+++. +  +..+++|+.|++++|++++.
T Consensus       294 l~~L~~L~L~~n~l~-~~~~~~~-~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~  354 (390)
T 3o6n_A          294 IPTLKVLDLSHNHLL-HVERNQP-QFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCN  354 (390)
T ss_dssp             CTTCCEEECCSSCCC-CCGGGHH-HHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHH
T ss_pred             CCCCCEEECCCCcce-ecCcccc-ccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccch
Confidence            788888888888887 6777666 578888888888888744 2  56778888888888888753

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=6.5e-33  Score=307.29  Aligned_cols=335  Identities=18%  Similarity=0.203  Sum_probs=240.3

Q ss_pred             CCCCcEEEccCCcCCcccchhhhcCCCCcEEEccCCccccccccccccccccccCCCCCChhccCCCCCCEEEccCCcCC
Q 048351          285 MISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAGIS  364 (850)
Q Consensus       285 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~  364 (850)
                      ++++++|++++|.++...+..+..+++|++|++++|.+++..+..                 +..+++|++|++++|.++
T Consensus        44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~-----------------~~~l~~L~~L~L~~n~l~  106 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYA-----------------FAYAHTIQKLYMGFNAIR  106 (390)
T ss_dssp             GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTT-----------------TTTCTTCCEEECCSSCCC
T ss_pred             cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhh-----------------ccCCCCcCEEECCCCCCC
Confidence            457777888877777544455677888888888888776554332                 566677777777777776


Q ss_pred             CCCchhHhhcCcCCCEEecccCcCcccCChhhhhhccCCcCEEEccCCcCcccCCCCCCCCcEEEccCCcCcCccccccc
Q 048351          365 DSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSLPSNAFYIDLSKNKFSGPISFLCS  444 (850)
Q Consensus       365 ~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~  444 (850)
                      +..|..+... ++|++|++++|.++...+..+ .                                              
T Consensus       107 ~~~~~~~~~l-~~L~~L~L~~n~l~~l~~~~~-~----------------------------------------------  138 (390)
T 3o6n_A          107 YLPPHVFQNV-PLLTVLVLERNDLSSLPRGIF-H----------------------------------------------  138 (390)
T ss_dssp             CCCTTTTTTC-TTCCEEECCSSCCCCCCTTTT-T----------------------------------------------
T ss_pred             cCCHHHhcCC-CCCCEEECCCCccCcCCHHHh-c----------------------------------------------
Confidence            6555554433 466666666666653222222 0                                              


Q ss_pred             cCCCCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCCCccccccCccEEeccCCccccCCchhhcCCCCcCe
Q 048351          445 FSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRV  524 (850)
Q Consensus       445 ~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  524 (850)
                       .+++|++|++++|.+++..|..+..+++|++|++++|.+++.   .+..+++|+.|++++|.+++     +...++|+.
T Consensus       139 -~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~-----~~~~~~L~~  209 (390)
T 3o6n_A          139 -NTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST-----LAIPIAVEE  209 (390)
T ss_dssp             -TCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSE-----EECCSSCSE
T ss_pred             -CCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccccc-----cCCCCcceE
Confidence             236777777777777766677777788888888888887753   25567788888888887763     233457888


Q ss_pred             eccccccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccCcccCCccccCcccCccccccCcc
Q 048351          525 VALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSS  604 (850)
Q Consensus       525 L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~  604 (850)
                      |++++|.+. .+|...   .++|++|++++|.+++.  ..+..+++|++|++++|.+++..|..+..+++|         
T Consensus       210 L~l~~n~l~-~~~~~~---~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L---------  274 (390)
T 3o6n_A          210 LDASHNSIN-VVRGPV---NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRL---------  274 (390)
T ss_dssp             EECCSSCCC-EEECCC---CSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSC---------
T ss_pred             EECCCCeee-eccccc---cccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccC---------
Confidence            888888887 555532   56888888888888754  467788888888888888887777777666555         


Q ss_pred             ccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCC
Q 048351          605 AITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYI  684 (850)
Q Consensus       605 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~i  684 (850)
                                                                +.|+|++|++++ +|..+..+++|+.|+|++|+++ .+
T Consensus       275 ------------------------------------------~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~  310 (390)
T 3o6n_A          275 ------------------------------------------ERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HV  310 (390)
T ss_dssp             ------------------------------------------CEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CC
T ss_pred             ------------------------------------------CEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ec
Confidence                                                      788888888874 5666778889999999999998 46


Q ss_pred             CccccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCCcCcccCCCCCcCCCcCccccCCCCCCCCCC
Q 048351          685 TPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGKIPTGTQLQSFNASVYDGNPELCGLP  756 (850)
Q Consensus       685 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~lc~~~  756 (850)
                      |..++.+++|+.|++++|+++.. |  +..+++|++|++++|++++... ...+..+....+.+++..|.++
T Consensus       311 ~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~~-~~~~~~~~~~~~~~~~~~c~~~  378 (390)
T 3o6n_A          311 ERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSL-RALFRNVARPAVDDADQHCKID  378 (390)
T ss_dssp             GGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHH-HHHTTTCCTTTBCCCCSCCCTT
T ss_pred             CccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccchhH-HHHHHHHHhhcccccCceeccc
Confidence            77788899999999999999865 3  6778899999999999987522 1234445555677777777653

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=5.7e-33  Score=324.77  Aligned_cols=335  Identities=18%  Similarity=0.203  Sum_probs=250.8

Q ss_pred             CCCCcEEEccCCcCCcccchhhhcCCCCcEEEccCCccccccccccccccccccCCCCCChhccCCCCCCEEEccCCcCC
Q 048351          285 MISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAGIS  364 (850)
Q Consensus       285 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~  364 (850)
                      +.+++.+++++|.+....+..+.++++|++|+|++|.+++..+..                 +..+++|+.|++++|.++
T Consensus        50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~-----------------~~~l~~L~~L~L~~n~l~  112 (597)
T 3oja_B           50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYA-----------------FAYAHTIQKLYMGFNAIR  112 (597)
T ss_dssp             GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTT-----------------TTTCTTCCEEECCSSCCC
T ss_pred             CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHH-----------------hcCCCCCCEEECCCCcCC
Confidence            456777777777777655566777778888888887777654432                 566677777777777766


Q ss_pred             CCCchhHhhcCcCCCEEecccCcCcccCChhhhhhccCCcCEEEccCCcCcccCCCCCCCCcEEEccCCcCcCccccccc
Q 048351          365 DSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSLPSNAFYIDLSKNKFSGPISFLCS  444 (850)
Q Consensus       365 ~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~  444 (850)
                      +..|..|... ++|++|++++|.+++..+..+ .                                              
T Consensus       113 ~~~~~~~~~l-~~L~~L~L~~n~l~~l~~~~~-~----------------------------------------------  144 (597)
T 3oja_B          113 YLPPHVFQNV-PLLTVLVLERNDLSSLPRGIF-H----------------------------------------------  144 (597)
T ss_dssp             CCCTTTTTTC-TTCCEEECCSSCCCCCCTTTT-T----------------------------------------------
T ss_pred             CCCHHHHcCC-CCCCEEEeeCCCCCCCCHHHh-c----------------------------------------------
Confidence            6555554433 466666666666653332222 0                                              


Q ss_pred             cCCCCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCCCccccccCccEEeccCCccccCCchhhcCCCCcCe
Q 048351          445 FSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRV  524 (850)
Q Consensus       445 ~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  524 (850)
                       .+++|++|++++|.+++..|..|..+++|++|++++|.+++.   .++.+++|+.|++++|.+++     +...++|+.
T Consensus       145 -~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~  215 (597)
T 3oja_B          145 -NTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST-----LAIPIAVEE  215 (597)
T ss_dssp             -TCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCCSE-----EECCTTCSE
T ss_pred             -cCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCcccc-----ccCCchhhe
Confidence             236788888888888877777788888888888888888754   25567788888888888764     234567888


Q ss_pred             eccccccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccCcccCCccccCcccCccccccCcc
Q 048351          525 VALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSS  604 (850)
Q Consensus       525 L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~  604 (850)
                      |++++|.++ .+|..+   .++|+.|++++|.+++  +..+..+++|+.|+|++|.+++..|..+.++++|         
T Consensus       216 L~ls~n~l~-~~~~~~---~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L---------  280 (597)
T 3oja_B          216 LDASHNSIN-VVRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRL---------  280 (597)
T ss_dssp             EECCSSCCC-EEECSC---CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSC---------
T ss_pred             eeccCCccc-cccccc---CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCC---------
Confidence            888888887 555443   4688999999999886  3568888999999999999988888877766665         


Q ss_pred             ccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCC
Q 048351          605 AITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYI  684 (850)
Q Consensus       605 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~i  684 (850)
                                                                +.|+|++|++++ +|..+..+++|+.|+|++|.++ .+
T Consensus       281 ------------------------------------------~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i  316 (597)
T 3oja_B          281 ------------------------------------------ERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HV  316 (597)
T ss_dssp             ------------------------------------------CEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CC
T ss_pred             ------------------------------------------CEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-cc
Confidence                                                      789999999985 5777778899999999999999 57


Q ss_pred             CccccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCCcCcccCCCCCcCCCcCccccCCCCCCCCCC
Q 048351          685 TPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGKIPTGTQLQSFNASVYDGNPELCGLP  756 (850)
Q Consensus       685 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~lc~~~  756 (850)
                      |..++.+++|+.|+|++|++++..   +..+++|++|++++|+++|..+. ..+..+....+.+++..|+.+
T Consensus       317 ~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~C~~~  384 (597)
T 3oja_B          317 ERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCKID  384 (597)
T ss_dssp             GGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCCCCCTT
T ss_pred             CcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCChhHH-HHHHHHhhhccccccccCCcc
Confidence            888899999999999999998653   67788999999999999986432 345566666788999999764

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=3.2e-32  Score=318.45  Aligned_cols=312  Identities=21%  Similarity=0.190  Sum_probs=196.2

Q ss_pred             CCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCCccccccCCCcc
Q 048351          121 KLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAGNLDWISQLFSLR  200 (850)
Q Consensus       121 ~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~  200 (850)
                      .+.+++.|++++|.+... .+..++++++|++|+|++|.+++..|..|+.+++|++|+|++|.+.. ..+..++++++|+
T Consensus        49 ~l~~l~~l~l~~~~l~~l-p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~  126 (597)
T 3oja_B           49 TLNNQKIVTFKNSTMRKL-PAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY-LPPHVFQNVPLLT  126 (597)
T ss_dssp             GGCCCSEEEESSCEESEE-CTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCC
T ss_pred             cCCCceEEEeeCCCCCCc-CHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCC-CCHHHHcCCCCCC
Confidence            467889999999998853 33456788999999999999988777788888888888888776422 2222334444444


Q ss_pred             EEeCCCCCCCCCcchhhhhcCCCCCcEEEccCCCCCCCCCccccccccCCCCcccEEEccCCCCCCccchhhhcCCCCCC
Q 048351          201 YLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPD  280 (850)
Q Consensus       201 ~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~ip~  280 (850)
                      +|+|++|.++.                          .++    ..+..+ ++|++|+|++|.+++.          .|.
T Consensus       127 ~L~L~~n~l~~--------------------------l~~----~~~~~l-~~L~~L~Ls~N~l~~~----------~~~  165 (597)
T 3oja_B          127 VLVLERNDLSS--------------------------LPR----GIFHNT-PKLTTLSMSNNNLERI----------EDD  165 (597)
T ss_dssp             EEECCSSCCCC--------------------------CCT----TTTTTC-TTCCEEECCSSCCCBC----------CTT
T ss_pred             EEEeeCCCCCC--------------------------CCH----HHhccC-CCCCEEEeeCCcCCCC----------Chh
Confidence            44444444433                          222    111222 4444444444444432          222


Q ss_pred             CCCCCCCCcEEEccCCcCCcccchhhhcCCCCcEEEccCCccccccccccccccccccCCCCCChhccCCCCCCEEEccC
Q 048351          281 APGPMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISS  360 (850)
Q Consensus       281 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~~~l~~~~p~~l~~l~~L~~L~Ls~  360 (850)
                      .++.+++|++|++++|.+++..   ++.+++|+.|++++|.+++..                                  
T Consensus       166 ~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~l~----------------------------------  208 (597)
T 3oja_B          166 TFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTLA----------------------------------  208 (597)
T ss_dssp             TTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSEEE----------------------------------
T ss_pred             hhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCcccccc----------------------------------
Confidence            3444455555555555554321   233444455555444443211                                  


Q ss_pred             CcCCCCCchhHhhcCcCCCEEecccCcCcccCChhhhhhccCCcCEEEccCCcCcccCCCCCCCCcEEEccCCcCcCccc
Q 048351          361 AGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSLPSNAFYIDLSKNKFSGPIS  440 (850)
Q Consensus       361 n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~L~~L~Ls~n~l~~~~~  440 (850)
                                   ..++|+.|++++|.+....                          +.                    
T Consensus       209 -------------~~~~L~~L~ls~n~l~~~~--------------------------~~--------------------  229 (597)
T 3oja_B          209 -------------IPIAVEELDASHNSINVVR--------------------------GP--------------------  229 (597)
T ss_dssp             -------------CCTTCSEEECCSSCCCEEE--------------------------CS--------------------
T ss_pred             -------------CCchhheeeccCCcccccc--------------------------cc--------------------
Confidence                         0123444444444443111                          00                    


Q ss_pred             cccccCCCCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCCCccccccCccEEeccCCccccCCchhhcCCC
Q 048351          441 FLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFT  520 (850)
Q Consensus       441 ~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  520 (850)
                           ..++|+.|++++|.+++  +..+..+++|+.|+|++|.+++..|..|+.+++|+.|+|++|++++ +|..+..++
T Consensus       230 -----~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~  301 (597)
T 3oja_B          230 -----VNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIP  301 (597)
T ss_dssp             -----CCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCT
T ss_pred             -----cCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCC
Confidence                 01456777777777765  3567777888888888888887777778888888888888888875 566667788


Q ss_pred             CcCeeccccccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccCccc
Q 048351          521 HLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGN  584 (850)
Q Consensus       521 ~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~  584 (850)
                      +|+.|+|++|.++ .+|..+. .+++|++|++++|.+++. |  +..+++|+.|++++|++++.
T Consensus       302 ~L~~L~Ls~N~l~-~i~~~~~-~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~  360 (597)
T 3oja_B          302 TLKVLDLSHNHLL-HVERNQP-QFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCN  360 (597)
T ss_dssp             TCCEEECCSSCCC-CCGGGHH-HHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHH
T ss_pred             CCcEEECCCCCCC-ccCcccc-cCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCCh
Confidence            8888888888887 7887776 588888888888888754 2  56778888899999888754

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.98  E-value=1e-30  Score=284.88  Aligned_cols=79  Identities=25%  Similarity=0.339  Sum_probs=43.9

Q ss_pred             cEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCCCccccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCC
Q 048351          647 KSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHN  726 (850)
Q Consensus       647 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N  726 (850)
                      +.|++++|++++.  ..+..+++|+.|++++|++++..|..++.+++|++|++++|++++..|  +..+++|++||+++|
T Consensus       268 ~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N  343 (347)
T 4fmz_A          268 KMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQ  343 (347)
T ss_dssp             CEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC
T ss_pred             CEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhh
Confidence            5555555555533  235555566666666666655555555666666666666666665444  555666666666666


Q ss_pred             cCc
Q 048351          727 NLS  729 (850)
Q Consensus       727 ~l~  729 (850)
                      +++
T Consensus       344 ~i~  346 (347)
T 4fmz_A          344 VIK  346 (347)
T ss_dssp             ---
T ss_pred             ccc
Confidence            553

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.98  E-value=1.6e-30  Score=283.44  Aligned_cols=308  Identities=22%  Similarity=0.315  Sum_probs=184.5

Q ss_pred             cccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCCccccccCC
Q 048351          118 ALLKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAGNLDWISQLF  197 (850)
Q Consensus       118 ~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~  197 (850)
                      .+..+++|++|++++|.+..  +|. ++.+++|++|++++|.+++. |. +..+++|++|++++|.+..   .+.+.+++
T Consensus        39 ~~~~l~~L~~L~l~~~~i~~--~~~-~~~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~~---~~~~~~l~  110 (347)
T 4fmz_A           39 TQEELESITKLVVAGEKVAS--IQG-IEYLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKITD---ISALQNLT  110 (347)
T ss_dssp             CHHHHTTCSEEECCSSCCCC--CTT-GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC---CGGGTTCT
T ss_pred             cchhcccccEEEEeCCcccc--chh-hhhcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCcccC---chHHcCCC
Confidence            35678899999999999984  554 78899999999999999864 43 8899999999999997633   34578888


Q ss_pred             CccEEeCCCCCCCCCcchhhhhcCCCCCcEEEccCCCCCCCCCccccccccCCCCcccEEEccCCCCCCccchhhhcCCC
Q 048351          198 SLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSS  277 (850)
Q Consensus       198 ~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~  277 (850)
                      +|++|++++|.+++.+   . +..+++|++|++++|......+     .+..+ ++|++|++++|.+.+..+        
T Consensus       111 ~L~~L~l~~n~i~~~~---~-~~~l~~L~~L~l~~n~~~~~~~-----~~~~l-~~L~~L~l~~~~~~~~~~--------  172 (347)
T 4fmz_A          111 NLRELYLNEDNISDIS---P-LANLTKMYSLNLGANHNLSDLS-----PLSNM-TGLNYLTVTESKVKDVTP--------  172 (347)
T ss_dssp             TCSEEECTTSCCCCCG---G-GTTCTTCCEEECTTCTTCCCCG-----GGTTC-TTCCEEECCSSCCCCCGG--------
T ss_pred             cCCEEECcCCcccCch---h-hccCCceeEEECCCCCCccccc-----chhhC-CCCcEEEecCCCcCCchh--------
Confidence            8888888888887742   2 6677777777777775444332     23333 566666666665554211        


Q ss_pred             CCCCCCCCCCCcEEEccCCcCCcccchhhhcCCCCcEEEccCCccccccccccccccccccCCCCCChhccCCCCCCEEE
Q 048351          278 IPDAPGPMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLD  357 (850)
Q Consensus       278 ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~~~l~~~~p~~l~~l~~L~~L~  357 (850)
                          +..+++|++|++++|.+.+..+  +..+++|+.|++++|.+.                                  
T Consensus       173 ----~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~----------------------------------  212 (347)
T 4fmz_A          173 ----IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQIT----------------------------------  212 (347)
T ss_dssp             ----GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCC----------------------------------
T ss_pred             ----hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCC----------------------------------
Confidence                3345555555555555553222  455555555555555544                                  


Q ss_pred             ccCCcCCCCCchhHhhcCcCCCEEecccCcCcccCChhhhhhccCCcCEEEccCCcCcccCCCCCCCCcEEEccCCcCcC
Q 048351          358 ISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSLPSNAFYIDLSKNKFSG  437 (850)
Q Consensus       358 Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~L~~L~Ls~n~l~~  437 (850)
                             +..+  + ..+++|++|++++|.+++..+  + .                                       
T Consensus       213 -------~~~~--~-~~~~~L~~L~l~~n~l~~~~~--~-~---------------------------------------  240 (347)
T 4fmz_A          213 -------DITP--V-ANMTRLNSLKIGNNKITDLSP--L-A---------------------------------------  240 (347)
T ss_dssp             -------CCGG--G-GGCTTCCEEECCSSCCCCCGG--G-T---------------------------------------
T ss_pred             -------CCch--h-hcCCcCCEEEccCCccCCCcc--h-h---------------------------------------
Confidence                   3322  1 122456666666665553221  1 0                                       


Q ss_pred             ccccccccCCCCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCCCccccccCccEEeccCCccccCCchhhc
Q 048351          438 PISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLK  517 (850)
Q Consensus       438 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~  517 (850)
                              .+++|++|++++|.+++.  +.+..+++|++|++++|.+++.  +.+..+++|+.|++++|++++..|..+.
T Consensus       241 --------~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~  308 (347)
T 4fmz_A          241 --------NLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIG  308 (347)
T ss_dssp             --------TCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHH
T ss_pred             --------cCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhh
Confidence                    113455555555555432  2355555556666666555532  2355556666666666666655555666


Q ss_pred             CCCCcCeeccccccceeecchhHHhcCCCCCEEEccCCccc
Q 048351          518 NFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFY  558 (850)
Q Consensus       518 ~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~  558 (850)
                      .+++|++|++++|++++..|  +. .+++|++|++++|.++
T Consensus       309 ~l~~L~~L~L~~n~l~~~~~--~~-~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          309 GLTNLTTLFLSQNHITDIRP--LA-SLSKMDSADFANQVIK  346 (347)
T ss_dssp             TCTTCSEEECCSSSCCCCGG--GG-GCTTCSEESSSCC---
T ss_pred             ccccCCEEEccCCccccccC--hh-hhhccceeehhhhccc
Confidence            66666666666666653333  22 4666666666666654

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.97  E-value=4.2e-32  Score=292.28  Aligned_cols=275  Identities=18%  Similarity=0.215  Sum_probs=231.9

Q ss_pred             CCCCcHHHHHHHHHhhhcCC-CCCCCCCCCCC-CCCCCCCccccceEecC--------CCCCEEEEEcCCCCCcccchhh
Q 048351           32 SIRCIEEERKALLKFKQGLV-DEFGFLSSWGS-EGEKKDCCNWRGVRCSN--------QTGHVKVLDLHGTGRVKVLDIQ  101 (850)
Q Consensus        32 ~~~~~~~~~~~Ll~~k~~~~-~~~~~l~~W~~-~~~~~~~c~w~gv~C~~--------~~~~v~~l~L~~~~~l~~l~l~  101 (850)
                      ...+..+|+.||++||+++. ++.+..++|.. .....++|.|.|++|+.        ...+|+.++|++          
T Consensus        21 ~~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~----------   90 (328)
T 4fcg_A           21 GSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRS----------   90 (328)
T ss_dssp             --CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEES----------
T ss_pred             ccccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccC----------
Confidence            44567789999999999984 77666778830 01457899999999952        346899999988          


Q ss_pred             hhccCCCCCCcccccccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCcccCCCCCCcEEEccC
Q 048351          102 TRVMSGNASLRGTLNPALLKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGY  181 (850)
Q Consensus       102 ~~~~~~~~~l~g~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~  181 (850)
                             +.++ .+|+.++++++|++|+|++|.++  .+|..++++++|++|+|++|.++ .+|..++++++|++|++++
T Consensus        91 -------n~l~-~lp~~l~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~  159 (328)
T 4fcg_A           91 -------VPLP-QFPDQAFRLSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRA  159 (328)
T ss_dssp             -------SCCS-SCCSCGGGGTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEE
T ss_pred             -------CCch-hcChhhhhCCCCCEEECCCCCcc--chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCC
Confidence                   4565 78889999999999999999999  48999999999999999999999 7899999999999999999


Q ss_pred             CCCCCCCCccc---------cccCCCccEEeCCCCCCCCCcchhhhhcCCCCCcEEEccCCCCCCCCCccccccccCCCC
Q 048351          182 NKLLRAGNLDW---------ISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSP  252 (850)
Q Consensus       182 N~l~~~~~~~~---------l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~  252 (850)
                      |++.... +..         +.++++|++|++++|+++.   +|..+..+++|++|++++|.+++.++     .+..+ +
T Consensus       160 n~~~~~~-p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~---lp~~l~~l~~L~~L~L~~N~l~~l~~-----~l~~l-~  229 (328)
T 4fcg_A          160 CPELTEL-PEPLASTDASGEHQGLVNLQSLRLEWTGIRS---LPASIANLQNLKSLKIRNSPLSALGP-----AIHHL-P  229 (328)
T ss_dssp             ETTCCCC-CSCSEEEC-CCCEEESTTCCEEEEEEECCCC---CCGGGGGCTTCCEEEEESSCCCCCCG-----GGGGC-T
T ss_pred             CCCcccc-ChhHhhccchhhhccCCCCCEEECcCCCcCc---chHhhcCCCCCCEEEccCCCCCcCch-----hhccC-C
Confidence            8754332 222         4459999999999999996   56779999999999999999997654     45666 9


Q ss_pred             cccEEEccCCCCCCccchhhhcCCCCCCCCCCCCCCcEEEccCCcCCcccchhhhcCCCCcEEEccCCcccccccccccc
Q 048351          253 SLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFS  332 (850)
Q Consensus       253 ~L~~L~Ls~N~l~~~~~~~l~~l~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~  332 (850)
                      +|++|++++|++.+.          +|..++.+++|++|++++|++.+.+|..+.++++|++|+|++|.+.+.+|     
T Consensus       230 ~L~~L~Ls~n~~~~~----------~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP-----  294 (328)
T 4fcg_A          230 KLEELDLRGCTALRN----------YPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP-----  294 (328)
T ss_dssp             TCCEEECTTCTTCCB----------CCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCC-----
T ss_pred             CCCEEECcCCcchhh----------hHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhcc-----
Confidence            999999999999987          56668889999999999999999999999999999999999999877554     


Q ss_pred             ccccccCCCCCChhccCCCCCCEEEccCCcCC
Q 048351          333 NFSYLKMGPHFPKWLQTQKHFSVLDISSAGIS  364 (850)
Q Consensus       333 ~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~  364 (850)
                                  .++..+++|+.+++..+.+.
T Consensus       295 ------------~~l~~L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          295 ------------SLIAQLPANCIILVPPHLQA  314 (328)
T ss_dssp             ------------GGGGGSCTTCEEECCGGGSC
T ss_pred             ------------HHHhhccCceEEeCCHHHHH
Confidence                        45889999999998877654

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=3.6e-34  Score=325.15  Aligned_cols=115  Identities=20%  Similarity=0.226  Sum_probs=73.1

Q ss_pred             CCCCEEeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCC----CCCcccCCCCCCcEEEccCCCCCCCCCccccccCC-
Q 048351          123 HYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSG----PIPPLLGNLSRLQYLSLGYNKLLRAGNLDWISQLF-  197 (850)
Q Consensus       123 ~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~-  197 (850)
                      ++|++|||++|+++.......+..+++|++|+|++|.+++    .++..+..+++|++|++++|.+...+.......++ 
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~   82 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   82 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence            4677888888887754233336677888888888888774    34666777788888888887753221111223344 


Q ss_pred             ---CccEEeCCCCCCCCC--cchhhhhcCCCCCcEEEccCCCCCC
Q 048351          198 ---SLRYLDLSSCNLSKS--TDWLQEVDKIPSLKTLYLEQCDLQL  237 (850)
Q Consensus       198 ---~L~~L~Ls~n~l~~~--~~~~~~l~~l~~L~~L~L~~n~l~~  237 (850)
                         +|++|++++|+++..  ..++..+..+++|++|++++|.++.
T Consensus        83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~  127 (461)
T 1z7x_W           83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD  127 (461)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHH
T ss_pred             CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCch
Confidence               577777777777642  1245566666666666666666543

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=5.2e-33  Score=315.65  Aligned_cols=364  Identities=18%  Similarity=0.139  Sum_probs=210.9

Q ss_pred             CcccEEEccCCCCCCccchhhhcCCCCCCCCCCCCCCcEEEccCCcCCc----ccchhhhcCCCCcEEEccCCccccccc
Q 048351          252 PSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDG----EIPKFFQNMFKLEGLSLRGNSLEGVIS  327 (850)
Q Consensus       252 ~~L~~L~Ls~N~l~~~~~~~l~~l~~ip~~l~~l~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~L~~N~l~~~~~  327 (850)
                      ++|++||+++|+++......+         +..+++|++|++++|.+++    .++..+..+++|++|++++|.+....+
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~---------~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~   73 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAEL---------LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGV   73 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHH---------HHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHH
T ss_pred             ccceehhhhhcccCchhHHHH---------HhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHH
Confidence            567777777777664322211         2345567777777777664    245556666777777777776654333


Q ss_pred             cccccccccccCCCCCChhccCCC----CCCEEEccCCcCCCC----CchhHhhcCcCCCEEecccCcCcccCChhhhhh
Q 048351          328 EHFFSNFSYLKMGPHFPKWLQTQK----HFSVLDISSAGISDS----IPDWFSDTSHKLADLNFSHNQMTGRFPNYISSM  399 (850)
Q Consensus       328 ~~~~~~l~~~~l~~~~p~~l~~l~----~L~~L~Ls~n~l~~~----~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~  399 (850)
                      ..+                ...++    +|++|++++|.+++.    ++..+.. +++|++|++++|.+++..+..+...
T Consensus        74 ~~l----------------~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~-~~~L~~L~Ls~n~i~~~~~~~l~~~  136 (461)
T 1z7x_W           74 HCV----------------LQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRT-LPTLQELHLSDNLLGDAGLQLLCEG  136 (461)
T ss_dssp             HHH----------------HHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTS-CTTCCEEECCSSBCHHHHHHHHHHH
T ss_pred             HHH----------------HHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHcc-CCceeEEECCCCcCchHHHHHHHHH
Confidence            221                11122    466666666665532    2333332 2455666666655554333322111


Q ss_pred             ccCCcCEEEccCCcCcccCCCCCCCCcEEEccCCcCcCccccccccCCCCccEEEccCCCCCCC----CCcccccCCCCC
Q 048351          400 FILESPGIDISSNHLEGPSPSLPSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGK----LPDCWLQFNMLR  475 (850)
Q Consensus       400 ~~~~L~~L~l~~N~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~  475 (850)
                      .                                           ....++|++|++++|.+++.    ++..+..+++|+
T Consensus       137 l-------------------------------------------~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~  173 (461)
T 1z7x_W          137 L-------------------------------------------LDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFK  173 (461)
T ss_dssp             H-------------------------------------------TSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCC
T ss_pred             H-------------------------------------------hcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCC
Confidence            0                                           00123566666666666543    244455567777


Q ss_pred             EEEcCCCcccccCCCccc-----cccCccEEeccCCccccC----CchhhcCCCCcCeeccccccceeec----chhHHh
Q 048351          476 ILNLANNNFSGKIPNSCG-----YLQKMLTLSLHHNNFSGE----LPSLLKNFTHLRVVALEENSISGNI----PAWIGE  542 (850)
Q Consensus       476 ~L~Ls~N~l~~~~p~~~~-----~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~~~i----p~~~~~  542 (850)
                      +|++++|.+++..+..+.     ..++|++|++++|.+++.    ++..+..+++|++|++++|++++.-    +..+..
T Consensus       174 ~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~  253 (461)
T 1z7x_W          174 ELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLH  253 (461)
T ss_dssp             EEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTS
T ss_pred             EEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhc
Confidence            777777776644333332     134677777777777653    4566666777777777777765322    122222


Q ss_pred             cCCCCCEEEccCCccccc----cCcCcCCCCCcceeecccccCcccCCccccCcccCccccccCccccccccccCCCccc
Q 048351          543 SLLNLVVLDLRSNRFYGK----IPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTM  618 (850)
Q Consensus       543 ~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~  618 (850)
                      .+++|++|++++|.+++.    ++..+..+++|++|++++|.+++..+..+...                          
T Consensus       254 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~--------------------------  307 (461)
T 1z7x_W          254 PSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCET--------------------------  307 (461)
T ss_dssp             TTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHH--------------------------
T ss_pred             CCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHH--------------------------
Confidence            366777777777777653    45556667777777777777764333222110                          


Q ss_pred             CccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCC----ChhhhhccccCCeEecCCCcCccCCCccccc----
Q 048351          619 LPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGE----VPEEIMDLVGLIGLNLSRNNLTGYITPKIGQ----  690 (850)
Q Consensus       619 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~----  690 (850)
                                          .....+.|+.|+|++|.+++.    ++..+..+++|+.|+|++|.+++..+..+..    
T Consensus       308 --------------------l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~  367 (461)
T 1z7x_W          308 --------------------LLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQ  367 (461)
T ss_dssp             --------------------HTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTS
T ss_pred             --------------------hccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcC
Confidence                                000112447777777777765    4555666677777777777777654444443    


Q ss_pred             -cCCCCeeeCCCCcCcc----cCcccccCCCCCCEEEcCCCcCcc
Q 048351          691 -LQSLDFLDLSRNQFSG----GIPSSLSQVNRLSVMDLSHNNLSG  730 (850)
Q Consensus       691 -l~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~ls~N~l~g  730 (850)
                       .++|++|+|++|++++    .+|..+..+++|++||+++|++++
T Consensus       368 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~  412 (461)
T 1z7x_W          368 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD  412 (461)
T ss_dssp             TTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred             CCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence             5677777777777775    667777777777777777777764

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=1.5e-29  Score=273.67  Aligned_cols=264  Identities=19%  Similarity=0.193  Sum_probs=165.5

Q ss_pred             CcCEEEccCCcCcccCCCC---CCCCcEEEccCCcCcCccccccccCCCCccEEEccCCCCCCCCCcccccCCCCCEEEc
Q 048351          403 ESPGIDISSNHLEGPSPSL---PSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNL  479 (850)
Q Consensus       403 ~L~~L~l~~N~l~~~~~~~---~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L  479 (850)
                      .++.|++++|.+++..+..   +++|++|++++|.+++..+... ..+++|++|++++|.++ .+|..+.  ++|++|++
T Consensus        55 ~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l  130 (332)
T 2ft3_A           55 DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAF-SPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRI  130 (332)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGS-TTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEEC
T ss_pred             CCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHh-hCcCCCCEEECCCCcCC-ccCcccc--ccCCEEEC
Confidence            3444444444444433321   3445555555555544333222 13466777777777776 4444333  66777777


Q ss_pred             CCCcccccCCCccccccCccEEeccCCccc--cCCchhhcCCCCcCeeccccccceeecchhHHhcCCCCCEEEccCCcc
Q 048351          480 ANNNFSGKIPNSCGYLQKMLTLSLHHNNFS--GELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRF  557 (850)
Q Consensus       480 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~--~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l  557 (850)
                      ++|.+++..+..+..+++|++|++++|.++  +..|..+..+ +|++|++++|+++ .+|..+.   ++|++|++++|.+
T Consensus       131 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~-~l~~~~~---~~L~~L~l~~n~i  205 (332)
T 2ft3_A          131 HDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT-GIPKDLP---ETLNELHLDHNKI  205 (332)
T ss_dssp             CSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS-SCCSSSC---SSCSCCBCCSSCC
T ss_pred             CCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC-ccCcccc---CCCCEEECCCCcC
Confidence            777777555555677777777777777774  3556666666 7777777777776 4665442   5677777777777


Q ss_pred             ccccCcCcCCCCCcceeecccccCcccCCccccCcccCccccccCccccccccccCCCcccCccceEeeEEEEEecCccc
Q 048351          558 YGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEY  637 (850)
Q Consensus       558 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  637 (850)
                      ++..+..+..+++|+.|++++|++++..+..+..+++|                                          
T Consensus       206 ~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L------------------------------------------  243 (332)
T 2ft3_A          206 QAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTL------------------------------------------  243 (332)
T ss_dssp             CCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTC------------------------------------------
T ss_pred             CccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCC------------------------------------------
Confidence            76666677777777777777777776555555444443                                          


Q ss_pred             ccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCCCcccccc------CCCCeeeCCCCcCc--ccCc
Q 048351          638 EYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQL------QSLDFLDLSRNQFS--GGIP  709 (850)
Q Consensus       638 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l------~~L~~L~Ls~N~l~--~~~p  709 (850)
                               +.|+|++|+++ .+|..+..+++|+.|++++|++++..+..|...      ..|+.|++++|.+.  +..|
T Consensus       244 ---------~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~  313 (332)
T 2ft3_A          244 ---------RELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQP  313 (332)
T ss_dssp             ---------CEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCG
T ss_pred             ---------CEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCc
Confidence                     67777777777 666677777777777777777776666655543      55777777777776  5666


Q ss_pred             ccccCCCCCCEEEcCCCc
Q 048351          710 SSLSQVNRLSVMDLSHNN  727 (850)
Q Consensus       710 ~~l~~l~~L~~L~ls~N~  727 (850)
                      ..|..++.|+.+++++|+
T Consensus       314 ~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          314 ATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             GGGTTBCCSTTEEC----
T ss_pred             ccccccchhhhhhccccc
Confidence            777777777777777764

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=8.5e-29  Score=267.74  Aligned_cols=250  Identities=22%  Similarity=0.279  Sum_probs=164.1

Q ss_pred             cccEEEccCCCCCCccchhhhcCCCCCCCCCCCCCCcEEEccCCcCCcccchhhhcCCCCcEEEccCCcccccccccccc
Q 048351          253 SLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFS  332 (850)
Q Consensus       253 ~L~~L~Ls~N~l~~~~~~~l~~l~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~  332 (850)
                      +++.++++++.++.           +|..+.  ++|++|++++|.+++..|..|.++++|++|++++|++++..+..   
T Consensus        34 ~l~~l~~~~~~l~~-----------ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---   97 (332)
T 2ft3_A           34 HLRVVQCSDLGLKA-----------VPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKA---   97 (332)
T ss_dssp             ETTEEECCSSCCSS-----------CCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGG---
T ss_pred             cCCEEECCCCCccc-----------cCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhH---
Confidence            56777777776653           343332  46777777777777666667777777777777777776554432   


Q ss_pred             ccccccCCCCCChhccCCCCCCEEEccCCcCCCCCchhHhhcCcCCCEEecccCcCcccCChhhhhhccCCcCEEEccCC
Q 048351          333 NFSYLKMGPHFPKWLQTQKHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSN  412 (850)
Q Consensus       333 ~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~l~~N  412 (850)
                                    +..+++|++|++++|.++. +|..+.   ++|++|++++|.+++..+..+ .              
T Consensus        98 --------------~~~l~~L~~L~L~~n~l~~-l~~~~~---~~L~~L~l~~n~i~~~~~~~~-~--------------  144 (332)
T 2ft3_A           98 --------------FSPLRKLQKLYISKNHLVE-IPPNLP---SSLVELRIHDNRIRKVPKGVF-S--------------  144 (332)
T ss_dssp             --------------STTCTTCCEEECCSSCCCS-CCSSCC---TTCCEEECCSSCCCCCCSGGG-S--------------
T ss_pred             --------------hhCcCCCCEEECCCCcCCc-cCcccc---ccCCEEECCCCccCccCHhHh-C--------------
Confidence                          5666666666666666653 332221   356666666666554333323 1              


Q ss_pred             cCcccCCCCCCCCcEEEccCCcCcCccccccccCCCCccEEEccCCCCC--CCCCcccccCCCCCEEEcCCCcccccCCC
Q 048351          413 HLEGPSPSLPSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLS--GKLPDCWLQFNMLRILNLANNNFSGKIPN  490 (850)
Q Consensus       413 ~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~--~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~  490 (850)
                                                       .+++|++|++++|.++  +..|..+..+ +|++|++++|.+++ +|.
T Consensus       145 ---------------------------------~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~  189 (332)
T 2ft3_A          145 ---------------------------------GLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPK  189 (332)
T ss_dssp             ---------------------------------SCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCS
T ss_pred             ---------------------------------CCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCc
Confidence                                             2256666777777664  2556666666 77777777777774 454


Q ss_pred             ccccccCccEEeccCCccccCCchhhcCCCCcCeeccccccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCC
Q 048351          491 SCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLAD  570 (850)
Q Consensus       491 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~  570 (850)
                      .+.  ++|++|++++|++++..+..+..+++|++|++++|++++..+..+. .+++|++|++++|+++ .+|..+..+++
T Consensus       190 ~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~-~lp~~l~~l~~  265 (332)
T 2ft3_A          190 DLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLS-FLPTLRELHLDNNKLS-RVPAGLPDLKL  265 (332)
T ss_dssp             SSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGG-GCTTCCEEECCSSCCC-BCCTTGGGCTT
T ss_pred             ccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhh-CCCCCCEEECCCCcCe-ecChhhhcCcc
Confidence            443  6777888888888776667777788888888888888744444444 6788888888888887 66777778888


Q ss_pred             cceeecccccCcccCCcccc
Q 048351          571 IQILDLSLNNISGNIPKCFN  590 (850)
Q Consensus       571 L~~L~Ls~N~l~~~~p~~~~  590 (850)
                      |++|++++|++++..+..|.
T Consensus       266 L~~L~l~~N~l~~~~~~~~~  285 (332)
T 2ft3_A          266 LQVVYLHTNNITKVGVNDFC  285 (332)
T ss_dssp             CCEEECCSSCCCBCCTTSSS
T ss_pred             CCEEECCCCCCCccChhHcc
Confidence            88888888888765555443

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=4.8e-29  Score=269.50  Aligned_cols=224  Identities=19%  Similarity=0.226  Sum_probs=138.3

Q ss_pred             CCCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCCCccccccCccEEeccCCccccCCchhhcCCCCcCeec
Q 048351          447 GQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVA  526 (850)
Q Consensus       447 ~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  526 (850)
                      +++|++|++++|.+++..|..|.++++|++|++++|.++ .+|..+.  ++|++|++++|++++..+..+.++++|++|+
T Consensus        75 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  151 (330)
T 1xku_A           75 LKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVE  151 (330)
T ss_dssp             CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEE
T ss_pred             CCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEE
Confidence            356666666666666666666666666666666666666 3444433  5666666666666665556666666666666


Q ss_pred             ccccccee--ecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccCcccCCccccCcccCccccccCcc
Q 048351          527 LEENSISG--NIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSS  604 (850)
Q Consensus       527 L~~N~l~~--~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~  604 (850)
                      +++|.+..  ..+..+. .+++|++|++++|.++. +|..+.  ++|++|++++|++++..|..+..+++|         
T Consensus       152 l~~n~l~~~~~~~~~~~-~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L---------  218 (330)
T 1xku_A          152 LGTNPLKSSGIENGAFQ-GMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNL---------  218 (330)
T ss_dssp             CCSSCCCGGGBCTTGGG-GCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTC---------
T ss_pred             CCCCcCCccCcChhhcc-CCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCC---------
Confidence            66666642  3333333 56666677776666663 444332  566667777766666555555544444         


Q ss_pred             ccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCC
Q 048351          605 AITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYI  684 (850)
Q Consensus       605 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~i  684 (850)
                                                                +.|+|++|++++..+..+..+++|+.|+|++|+++ .+
T Consensus       219 ------------------------------------------~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~l  255 (330)
T 1xku_A          219 ------------------------------------------AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KV  255 (330)
T ss_dssp             ------------------------------------------CEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SC
T ss_pred             ------------------------------------------CEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cC
Confidence                                                      56666666666665656666666666666666666 45


Q ss_pred             CccccccCCCCeeeCCCCcCcccCcccccCC------CCCCEEEcCCCcCc
Q 048351          685 TPKIGQLQSLDFLDLSRNQFSGGIPSSLSQV------NRLSVMDLSHNNLS  729 (850)
Q Consensus       685 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l------~~L~~L~ls~N~l~  729 (850)
                      |..+..+++|++|++++|++++..+..|...      +.|+.+++++|++.
T Consensus       256 p~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~  306 (330)
T 1xku_A          256 PGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ  306 (330)
T ss_dssp             CTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             ChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCccc
Confidence            6666666666666666666666555555432      45666666666664

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.96  E-value=1.7e-28  Score=265.15  Aligned_cols=224  Identities=23%  Similarity=0.309  Sum_probs=139.5

Q ss_pred             CCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCCCccccccCccEEeccCCccccCCchhhcCCCCcCeecc
Q 048351          448 QNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVAL  527 (850)
Q Consensus       448 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L  527 (850)
                      +++++|++++|.+++..+..|.++++|++|++++|.+++..|..|..+++|++|++++|+++ .+|..+.  ++|++|++
T Consensus        52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l  128 (330)
T 1xku_A           52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRV  128 (330)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEEC
T ss_pred             CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEEC
Confidence            45666666666666555556666666666666666666665666666666666666666666 3444332  56666666


Q ss_pred             ccccceeecchhHHhcCCCCCEEEccCCcccc--ccCcCcCCCCCcceeecccccCcccCCccccCcccCccccccCccc
Q 048351          528 EENSISGNIPAWIGESLLNLVVLDLRSNRFYG--KIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSA  605 (850)
Q Consensus       528 ~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~  605 (850)
                      ++|+++ .++...+.++++|++|++++|.+..  ..+..+..+++|++|++++|.++. +|..+.               
T Consensus       129 ~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~---------------  191 (330)
T 1xku_A          129 HENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP---------------  191 (330)
T ss_dssp             CSSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC---------------
T ss_pred             CCCccc-ccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCcccc---------------
Confidence            666666 3443333356666666666666642  455566666666666666666652 232211               


Q ss_pred             cccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCCC
Q 048351          606 ITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYIT  685 (850)
Q Consensus       606 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip  685 (850)
                                                            +.|+.|++++|++++..|..+..+++|+.|+|++|++++..+
T Consensus       192 --------------------------------------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~  233 (330)
T 1xku_A          192 --------------------------------------PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN  233 (330)
T ss_dssp             --------------------------------------TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECT
T ss_pred             --------------------------------------ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeCh
Confidence                                                  123666666666666666666666666666666666666666


Q ss_pred             ccccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCCcCcc
Q 048351          686 PKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSG  730 (850)
Q Consensus       686 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g  730 (850)
                      ..+..+++|++|+|++|+++ .+|..+..+++|++|++++|++++
T Consensus       234 ~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~  277 (330)
T 1xku_A          234 GSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA  277 (330)
T ss_dssp             TTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCC
T ss_pred             hhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCc
Confidence            66666666666666666666 556666666666666666666664

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.96  E-value=2.2e-31  Score=312.37  Aligned_cols=412  Identities=14%  Similarity=0.035  Sum_probs=183.9

Q ss_pred             cccccCCCCCCEEeCCCCCC---CCCCCCcccC------------CCCCCCEEeCCCCCCCCCCCcccCC-CC-CCcEEE
Q 048351          116 NPALLKLHYLRHLDLSFNNF---SGSQIPMFIG------------SLSKLEYLDLFAASFSGPIPPLLGN-LS-RLQYLS  178 (850)
Q Consensus       116 ~~~l~~l~~L~~L~Ls~n~l---~~~~~p~~~~------------~l~~L~~L~Ls~n~l~~~~p~~l~~-l~-~L~~L~  178 (850)
                      +..+.++++|++|+|+++..   .+. +|..++            .+++|++|+|++|.+++..+..+.. ++ +|++|+
T Consensus        66 ~~~~~~~~~L~~L~L~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~  144 (592)
T 3ogk_B           66 DRLSRRFPNLRSLKLKGKPRAAMFNL-IPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLK  144 (592)
T ss_dssp             HHHHHHCTTCSEEEEECSCGGGGGTC-SCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEE
T ss_pred             HHHHHhCCCCeEEEecCCcchhhccc-ccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEE
Confidence            33455667777777766432   111 332222            4566666666666655544444443 22 366666


Q ss_pred             ccCCCCCCCCCc-cccccCCCccEEeCCCCCCCCCcc--hhhhhcCCCCCcEEEccCCCCCCCCCccccccccCCCCccc
Q 048351          179 LGYNKLLRAGNL-DWISQLFSLRYLDLSSCNLSKSTD--WLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLE  255 (850)
Q Consensus       179 Ls~N~l~~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~--~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~  255 (850)
                      +++|........ ....++++|++|+|++|.+++...  +......+++|++|++++|.+++.........+.++ ++|+
T Consensus       145 L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~-~~L~  223 (592)
T 3ogk_B          145 LDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNC-RSLV  223 (592)
T ss_dssp             EESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHC-TTCC
T ss_pred             CcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhC-CCCc
Confidence            665541100001 112245555555555555443210  122233445555555555554422110000111122 4455


Q ss_pred             EEEccCCCCCCccchhhhcCCCCCCCCCCCCCCcEEEccCCcCC---cccchhhhcCCCCcEEEccCCcccccccccccc
Q 048351          256 TLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELD---GEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFS  332 (850)
Q Consensus       256 ~L~Ls~N~l~~~~~~~l~~l~~ip~~l~~l~~L~~L~Ls~N~l~---~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~  332 (850)
                      +|++++|.+.+ ++.          .+..+++|++|+++.+...   +..+..+..+++|+.|+++++...         
T Consensus       224 ~L~L~~~~~~~-l~~----------~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~---------  283 (592)
T 3ogk_B          224 SVKVGDFEILE-LVG----------FFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN---------  283 (592)
T ss_dssp             EEECSSCBGGG-GHH----------HHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT---------
T ss_pred             EEeccCccHHH-HHH----------HHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchh---------
Confidence            55555544433 111          1223344444444432111   112223334444444444432111         


Q ss_pred             ccccccCCCCCChhccCCCCCCEEEccCCcCCCCCchhHhhcCcCCCEEecccCcCcccCChhhhhhccCCcCEEEccC-
Q 048351          333 NFSYLKMGPHFPKWLQTQKHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISS-  411 (850)
Q Consensus       333 ~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~l~~-  411 (850)
                               .+|..+..+++|+.|++++|.+++.....+...+++|++|+++ +.+.......+...+ ++|+.|++++ 
T Consensus       284 ---------~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~-~~L~~L~L~~g  352 (592)
T 3ogk_B          284 ---------EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYC-KQLKRLRIERG  352 (592)
T ss_dssp             ---------TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHC-TTCCEEEEECC
T ss_pred             ---------HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhC-CCCCEEEeecC
Confidence                     2223344445555555555554433322222333455555555 222222111111122 4455555552 


Q ss_pred             ----------CcCcccCC----CCCCCCcEEEccCCcCcCccccccccCCCCccEEEcc----CCCCCCC-----CCccc
Q 048351          412 ----------NHLEGPSP----SLPSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLS----SNLLSGK-----LPDCW  468 (850)
Q Consensus       412 ----------N~l~~~~~----~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls----~n~l~~~-----~p~~~  468 (850)
                                |.+++...    ..+++|++|+++.|.+++.........+++|+.|+++    .|.+++.     ++..+
T Consensus       353 ~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~  432 (592)
T 3ogk_B          353 ADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLL  432 (592)
T ss_dssp             CCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHH
T ss_pred             ccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHH
Confidence                      33332110    1134555555555555443222111124566666664    4555542     22234


Q ss_pred             ccCCCCCEEEcCCCc--ccccCCCccc-cccCccEEeccCCcccc-CCchhhcCCCCcCeeccccccceeecchhHHhcC
Q 048351          469 LQFNMLRILNLANNN--FSGKIPNSCG-YLQKMLTLSLHHNNFSG-ELPSLLKNFTHLRVVALEENSISGNIPAWIGESL  544 (850)
Q Consensus       469 ~~l~~L~~L~Ls~N~--l~~~~p~~~~-~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l  544 (850)
                      .++++|+.|++++|.  +++..+..+. .+++|++|++++|++++ .++..+..+++|++|++++|.+++.....+...+
T Consensus       433 ~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l  512 (592)
T 3ogk_B          433 IGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKL  512 (592)
T ss_dssp             HHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHC
T ss_pred             HhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhc
Confidence            556667777775432  4443333332 25667777777776654 3344456666777777777766544333333356


Q ss_pred             CCCCEEEccCCccccc
Q 048351          545 LNLVVLDLRSNRFYGK  560 (850)
Q Consensus       545 ~~L~~L~L~~N~l~~~  560 (850)
                      ++|++|++++|++++.
T Consensus       513 ~~L~~L~ls~n~it~~  528 (592)
T 3ogk_B          513 PSLRYLWVQGYRASMT  528 (592)
T ss_dssp             SSCCEEEEESCBCCTT
T ss_pred             CccCeeECcCCcCCHH
Confidence            6777777777776544

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.96  E-value=3.2e-28  Score=260.10  Aligned_cols=233  Identities=22%  Similarity=0.252  Sum_probs=199.9

Q ss_pred             CCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCccccc--CCCccccccCccEEeccCCccccCCchhhcCCCCcCee
Q 048351          448 QNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGK--IPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVV  525 (850)
Q Consensus       448 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~--~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  525 (850)
                      ++|++|++++|.+++..+..|.++++|++|++++|.++..  .+..+..+++|++|++++|.++ .+|..+..+++|++|
T Consensus        28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L  106 (306)
T 2z66_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHL  106 (306)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEE
T ss_pred             CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEE
Confidence            5788899999998865556688899999999999988733  3566777899999999999988 567778899999999


Q ss_pred             ccccccceeecch-hHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccCcc-cCCccccCcccCccccccCc
Q 048351          526 ALEENSISGNIPA-WIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISG-NIPKCFNNFTAMTQERSYNS  603 (850)
Q Consensus       526 ~L~~N~l~~~ip~-~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~l~~~~~  603 (850)
                      ++++|+++ .++. ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++ .+|..+..+++|        
T Consensus       107 ~l~~n~l~-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L--------  177 (306)
T 2z66_A          107 DFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL--------  177 (306)
T ss_dssp             ECTTSEEE-SSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC--------
T ss_pred             ECCCCccc-ccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCC--------
Confidence            99999998 4443 333478999999999999998888889999999999999999986 567666665555        


Q ss_pred             cccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccC
Q 048351          604 SAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGY  683 (850)
Q Consensus       604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~  683 (850)
                                                                 ++|+|++|++++..|..+..+++|+.|+|++|++++.
T Consensus       178 -------------------------------------------~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  214 (306)
T 2z66_A          178 -------------------------------------------TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL  214 (306)
T ss_dssp             -------------------------------------------CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBC
T ss_pred             -------------------------------------------CEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCcc
Confidence                                                       8999999999988899999999999999999999988


Q ss_pred             CCccccccCCCCeeeCCCCcCcccCcccccCCC-CCCEEEcCCCcCcccCC
Q 048351          684 ITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVN-RLSVMDLSHNNLSGKIP  733 (850)
Q Consensus       684 ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~ls~N~l~g~iP  733 (850)
                      .+..+..+++|+.|||++|++++.+|..+..++ +|++|++++|+++|..+
T Consensus       215 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~  265 (306)
T 2z66_A          215 DTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE  265 (306)
T ss_dssp             CSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGG
T ss_pred             ChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccC
Confidence            888899999999999999999999999999985 99999999999987643

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.96  E-value=2.4e-28  Score=262.87  Aligned_cols=226  Identities=19%  Similarity=0.268  Sum_probs=200.7

Q ss_pred             CCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCCCccccccCccEEeccCCccccCCchhhcCCCCcCeecc
Q 048351          448 QNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVAL  527 (850)
Q Consensus       448 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L  527 (850)
                      ++++.|++++|.++ .+|..+.++++|++|++++|.++ .+|..++.+++|++|++++|+++ .+|..+.++++|++|++
T Consensus        81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L  157 (328)
T 4fcg_A           81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI  157 (328)
T ss_dssp             TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred             cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence            67899999999998 77888888999999999999998 88888999999999999999998 78888999999999999


Q ss_pred             ccccceeecchhHH--------hcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccCcccCCccccCcccCcccc
Q 048351          528 EENSISGNIPAWIG--------ESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQER  599 (850)
Q Consensus       528 ~~N~l~~~ip~~~~--------~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~  599 (850)
                      ++|++.+.+|..+.        .++++|++|++++|.++ .+|..+..+++|++|++++|++++ +|..+..+++|    
T Consensus       158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L----  231 (328)
T 4fcg_A          158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKL----  231 (328)
T ss_dssp             EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTC----
T ss_pred             CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCC----
Confidence            99888888888764        13889999999999998 788889999999999999999985 55555555444    


Q ss_pred             ccCccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCc
Q 048351          600 SYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNN  679 (850)
Q Consensus       600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~  679 (850)
                                                                     +.|+|++|++.+.+|..++.+++|+.|+|++|.
T Consensus       232 -----------------------------------------------~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~  264 (328)
T 4fcg_A          232 -----------------------------------------------EELDLRGCTALRNYPPIFGGRAPLKRLILKDCS  264 (328)
T ss_dssp             -----------------------------------------------CEEECTTCTTCCBCCCCTTCCCCCCEEECTTCT
T ss_pred             -----------------------------------------------CEEECcCCcchhhhHHHhcCCCCCCEEECCCCC
Confidence                                                           889999999999999999999999999999999


Q ss_pred             CccCCCccccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCCcCc
Q 048351          680 LTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLS  729 (850)
Q Consensus       680 l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~  729 (850)
                      +.+.+|..++++++|++|+|++|++.+.+|..+.++++|+.+++..|.+.
T Consensus       265 ~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          265 NLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA  314 (328)
T ss_dssp             TCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred             chhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence            99999999999999999999999999999999999999999999987665

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=1.2e-28  Score=269.08  Aligned_cols=276  Identities=19%  Similarity=0.149  Sum_probs=173.5

Q ss_pred             EEEccCCcCcccCCCCCCCCcEEEccCCcCcCccccccccCCCCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCccc
Q 048351          406 GIDISSNHLEGPSPSLPSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFS  485 (850)
Q Consensus       406 ~L~l~~N~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~  485 (850)
                      ..+++++.++..+....+++++|++++|.+++..+.. ...+++|++|++++|.+++..|..|.++++|++|++++|+++
T Consensus        35 ~c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  113 (353)
T 2z80_A           35 ICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSD-LQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS  113 (353)
T ss_dssp             EEECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTT-TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred             EeeCCCCCcccccccccccCcEEECCCCcCcccCHHH-hccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCC
Confidence            3555555555544444445555555555555433211 113466666666666666655666666666666666666666


Q ss_pred             ccCCCccccccCccEEeccCCccccCCc-hhhcCCCCcCeecccccc-ceeecchhHHhcCCCCCEEEccCCccccccCc
Q 048351          486 GKIPNSCGYLQKMLTLSLHHNNFSGELP-SLLKNFTHLRVVALEENS-ISGNIPAWIGESLLNLVVLDLRSNRFYGKIPF  563 (850)
Q Consensus       486 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~L~~N~-l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~  563 (850)
                      +..+..++.+++|++|++++|++++..+ ..+..+++|++|++++|. +. .++...+..+++|++|++++|.+++..|.
T Consensus       114 ~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  192 (353)
T 2z80_A          114 NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFT-KIQRKDFAGLTFLEELEIDASDLQSYEPK  192 (353)
T ss_dssp             SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCC-EECTTTTTTCCEEEEEEEEETTCCEECTT
T ss_pred             cCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCcccc-ccCHHHccCCCCCCEEECCCCCcCccCHH
Confidence            4433346666666666666666663322 356666666666666663 44 33332222566666666666666666666


Q ss_pred             CcCCCCCcceeecccccCcccCCccccCcccCccccccCccccccccccCCCcccCccceEeeEEEEEecCccccccccc
Q 048351          564 QLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTL  643 (850)
Q Consensus       564 ~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  643 (850)
                      .+..+++|++|++++|+++. +|..                                                  +...+
T Consensus       193 ~l~~l~~L~~L~l~~n~l~~-~~~~--------------------------------------------------~~~~~  221 (353)
T 2z80_A          193 SLKSIQNVSHLILHMKQHIL-LLEI--------------------------------------------------FVDVT  221 (353)
T ss_dssp             TTTTCSEEEEEEEECSCSTT-HHHH--------------------------------------------------HHHHT
T ss_pred             HHhccccCCeecCCCCcccc-chhh--------------------------------------------------hhhhc
Confidence            66666666666666666542 2211                                                  11234


Q ss_pred             ccccEEEcCCCCCCCCChhhhh---ccccCCeEecCCCcCcc----CCCccccccCCCCeeeCCCCcCcccCcccccCCC
Q 048351          644 GLVKSVDLSSNKLGGEVPEEIM---DLVGLIGLNLSRNNLTG----YITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVN  716 (850)
Q Consensus       644 ~~L~~L~Ls~N~l~~~~p~~l~---~l~~L~~L~Ls~N~l~~----~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  716 (850)
                      +.|+.|++++|++++..+..+.   ....++.++|+++.+++    .+|..+.++++|++||+++|+++...+..|..++
T Consensus       222 ~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~  301 (353)
T 2z80_A          222 SSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLT  301 (353)
T ss_dssp             TTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             ccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCC
Confidence            4558888899988876655543   35667888888888876    3677788899999999999999844434468899


Q ss_pred             CCCEEEcCCCcCcccCCC
Q 048351          717 RLSVMDLSHNNLSGKIPT  734 (850)
Q Consensus       717 ~L~~L~ls~N~l~g~iP~  734 (850)
                      +|++|++++|+++|.+|.
T Consensus       302 ~L~~L~L~~N~~~~~~~~  319 (353)
T 2z80_A          302 SLQKIWLHTNPWDCSCPR  319 (353)
T ss_dssp             TCCEEECCSSCBCCCHHH
T ss_pred             CCCEEEeeCCCccCcCCC
Confidence            999999999999887663

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=3.5e-28  Score=259.80  Aligned_cols=275  Identities=21%  Similarity=0.242  Sum_probs=222.4

Q ss_pred             EEEccCCcCcccCCCCCCCCcEEEccCCcCcCccccccccCCCCccEEEccCCCCCCC--CCcccccCCCCCEEEcCCCc
Q 048351          406 GIDISSNHLEGPSPSLPSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGK--LPDCWLQFNMLRILNLANNN  483 (850)
Q Consensus       406 ~L~l~~N~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~--~p~~~~~l~~L~~L~Ls~N~  483 (850)
                      .++++++.++..+...++++++|++++|.++...+. .+..+++|++|++++|.++..  .+..+..+++|++|++++|.
T Consensus        11 ~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~   89 (306)
T 2z66_A           11 EIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHG-VFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG   89 (306)
T ss_dssp             EEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTT-TTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS
T ss_pred             EEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHh-HhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc
Confidence            466666666655555566778888888887754332 223568999999999998733  36677789999999999999


Q ss_pred             ccccCCCccccccCccEEeccCCccccCCc-hhhcCCCCcCeeccccccceeecchhHHhcCCCCCEEEccCCcccc-cc
Q 048351          484 FSGKIPNSCGYLQKMLTLSLHHNNFSGELP-SLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYG-KI  561 (850)
Q Consensus       484 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~-~~  561 (850)
                      ++ .+|..+..+++|++|++++|++++..+ ..+..+++|++|++++|.+.+..|..+. .+++|++|++++|.+++ .+
T Consensus        90 i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~  167 (306)
T 2z66_A           90 VI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN-GLSSLEVLKMAGNSFQENFL  167 (306)
T ss_dssp             EE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTT-TCTTCCEEECTTCEEGGGEE
T ss_pred             cc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcc-cCcCCCEEECCCCccccccc
Confidence            98 467778899999999999999986655 6789999999999999999866666555 69999999999999987 68


Q ss_pred             CcCcCCCCCcceeecccccCcccCCccccCcccCccccccCccccccccccCCCcccCccceEeeEEEEEecCccccccc
Q 048351          562 PFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKN  641 (850)
Q Consensus       562 p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  641 (850)
                      |..+..+++|++|++++|++++..|..+..+++|                                              
T Consensus       168 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L----------------------------------------------  201 (306)
T 2z66_A          168 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL----------------------------------------------  201 (306)
T ss_dssp             CSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC----------------------------------------------
T ss_pred             hhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCC----------------------------------------------
Confidence            8899999999999999999998878777766655                                              


Q ss_pred             ccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCCCcccccc-CCCCeeeCCCCcCcccCcc--cccCCCCC
Q 048351          642 TLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQL-QSLDFLDLSRNQFSGGIPS--SLSQVNRL  718 (850)
Q Consensus       642 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l-~~L~~L~Ls~N~l~~~~p~--~l~~l~~L  718 (850)
                           +.|+|++|++++..+..+..+++|+.|+|++|++++.+|..+..+ ++|++|+|++|.+++..+.  ....+...
T Consensus       202 -----~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~  276 (306)
T 2z66_A          202 -----QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQ  276 (306)
T ss_dssp             -----CEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHT
T ss_pred             -----CEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhh
Confidence                 899999999998888889999999999999999999999999998 4999999999999875331  12223334


Q ss_pred             CEEEcCCCcCcccCCC
Q 048351          719 SVMDLSHNNLSGKIPT  734 (850)
Q Consensus       719 ~~L~ls~N~l~g~iP~  734 (850)
                      +.+.+..+.+.+..|.
T Consensus       277 ~~~~~~~~~~~C~~p~  292 (306)
T 2z66_A          277 RQLLVEVERMECATPS  292 (306)
T ss_dssp             GGGBSCGGGCBEEESG
T ss_pred             hhhhccccccccCCch
Confidence            4555666777776664

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.95  E-value=2.7e-27  Score=267.30  Aligned_cols=231  Identities=21%  Similarity=0.233  Sum_probs=202.1

Q ss_pred             CCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCCCccccccCccEEeccCCccccCCchhhcCCCCcCeecc
Q 048351          448 QNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVAL  527 (850)
Q Consensus       448 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L  527 (850)
                      +++++|+|++|.+++..|..|.++++|++|+|++|.+++..+..|.++++|++|+|++|++++..+..|..+++|++|++
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  154 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL  154 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred             CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence            57899999999999888889999999999999999999888889999999999999999999777778999999999999


Q ss_pred             ccccceeecchhHHhcCCCCCEEEccCC-ccccccCcCcCCCCCcceeecccccCcccCCccccCcccCccccccCcccc
Q 048351          528 EENSISGNIPAWIGESLLNLVVLDLRSN-RFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAI  606 (850)
Q Consensus       528 ~~N~l~~~ip~~~~~~l~~L~~L~L~~N-~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~  606 (850)
                      ++|+++ .+|...+..+++|++|++++| .+....+..|..+++|++|++++|++++. | .+..+              
T Consensus       155 ~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l--------------  217 (452)
T 3zyi_A          155 RNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPL--------------  217 (452)
T ss_dssp             CSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTC--------------
T ss_pred             CCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-ccccc--------------
Confidence            999998 677665567999999999995 55544455688999999999999999843 3 23222              


Q ss_pred             ccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCCCc
Q 048351          607 TFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITP  686 (850)
Q Consensus       607 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~  686 (850)
                                                           ++|+.|+|++|++++..|..|.++++|+.|+|++|++++..|.
T Consensus       218 -------------------------------------~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  260 (452)
T 3zyi_A          218 -------------------------------------VGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERN  260 (452)
T ss_dssp             -------------------------------------TTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTT
T ss_pred             -------------------------------------ccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHH
Confidence                                                 3448999999999999999999999999999999999999999


Q ss_pred             cccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCCcCcccC
Q 048351          687 KIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGKI  732 (850)
Q Consensus       687 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~i  732 (850)
                      .|.++++|+.|||++|++++..+..|..+++|++|++++|++.+..
T Consensus       261 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC  306 (452)
T 3zyi_A          261 AFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDC  306 (452)
T ss_dssp             TTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECST
T ss_pred             HhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCC
Confidence            9999999999999999999888888999999999999999988653

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=5.8e-28  Score=263.54  Aligned_cols=277  Identities=18%  Similarity=0.172  Sum_probs=232.0

Q ss_pred             CCCcEEEccCCcCcCccccccccCCCCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCCCccccccCccEEe
Q 048351          423 SNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLS  502 (850)
Q Consensus       423 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  502 (850)
                      +.....+.+++.++.......    ++|++|++++|.+++..+..+.++++|++|++++|.+++..|..|.++++|++|+
T Consensus        31 ~~~~~c~~~~~~l~~iP~~~~----~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (353)
T 2z80_A           31 DRNGICKGSSGSLNSIPSGLT----EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD  106 (353)
T ss_dssp             CTTSEEECCSTTCSSCCTTCC----TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCeEeeCCCCCccccccccc----ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEE
Confidence            334458888998886544322    5899999999999977777899999999999999999988888999999999999


Q ss_pred             ccCCccccCCchhhcCCCCcCeeccccccceeecch-hHHhcCCCCCEEEccCC-ccccccCcCcCCCCCcceeeccccc
Q 048351          503 LHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPA-WIGESLLNLVVLDLRSN-RFYGKIPFQLCHLADIQILDLSLNN  580 (850)
Q Consensus       503 Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~-~~~~~l~~L~~L~L~~N-~l~~~~p~~l~~l~~L~~L~Ls~N~  580 (850)
                      +++|++++..+..+.++++|++|++++|+++ .+|. ..+..+++|++|++++| .+.+..+..+..+++|++|++++|+
T Consensus       107 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~  185 (353)
T 2z80_A          107 LSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD  185 (353)
T ss_dssp             CCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred             CCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC
Confidence            9999999766666999999999999999998 6776 44447999999999999 5777777889999999999999999


Q ss_pred             CcccCCccccCcccCccccccCccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCC
Q 048351          581 ISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEV  660 (850)
Q Consensus       581 l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  660 (850)
                      +++..|..+.++++|                                                   ++|++++|+++...
T Consensus       186 l~~~~~~~l~~l~~L---------------------------------------------------~~L~l~~n~l~~~~  214 (353)
T 2z80_A          186 LQSYEPKSLKSIQNV---------------------------------------------------SHLILHMKQHILLL  214 (353)
T ss_dssp             CCEECTTTTTTCSEE---------------------------------------------------EEEEEECSCSTTHH
T ss_pred             cCccCHHHHhccccC---------------------------------------------------CeecCCCCccccch
Confidence            998888877666555                                                   88999999997544


Q ss_pred             hhhhhccccCCeEecCCCcCccCCCcccc---ccCCCCeeeCCCCcCcc----cCcccccCCCCCCEEEcCCCcCcccCC
Q 048351          661 PEEIMDLVGLIGLNLSRNNLTGYITPKIG---QLQSLDFLDLSRNQFSG----GIPSSLSQVNRLSVMDLSHNNLSGKIP  733 (850)
Q Consensus       661 p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~---~l~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~ls~N~l~g~iP  733 (850)
                      +..+..+++|+.|++++|++++..+..+.   ..+.++.++|++|.+++    .+|..+..+++|++||+++|+++ .+|
T Consensus       215 ~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~  293 (353)
T 2z80_A          215 EIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVP  293 (353)
T ss_dssp             HHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCC
T ss_pred             hhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccC
Confidence            44556789999999999999987665544   35778899999998886    47888999999999999999999 677


Q ss_pred             CC--CcCCCcCccccCCCCCCCCCC
Q 048351          734 TG--TQLQSFNASVYDGNPELCGLP  756 (850)
Q Consensus       734 ~~--~~~~~~~~~~~~gN~~lc~~~  756 (850)
                      ..  ..+..+....+.+||..|+|+
T Consensus       294 ~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          294 DGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             TTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             HHHHhcCCCCCEEEeeCCCccCcCC
Confidence            64  456777778899999999875

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.95  E-value=4.4e-27  Score=264.61  Aligned_cols=230  Identities=22%  Similarity=0.263  Sum_probs=196.1

Q ss_pred             CCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCCCccccccCccEEeccCCccccCCchhhcCCCCcCeecc
Q 048351          448 QNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVAL  527 (850)
Q Consensus       448 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L  527 (850)
                      ++++.|+|++|++++..+..|.++++|++|+|++|.+++..+..|.++++|++|+|++|++++..+..|..+++|++|++
T Consensus        64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  143 (440)
T 3zyj_A           64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL  143 (440)
T ss_dssp             TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred             CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence            57888888888888777888889999999999999998777788888999999999999998766778889999999999


Q ss_pred             ccccceeecchhHHhcCCCCCEEEccCC-ccccccCcCcCCCCCcceeecccccCcccCCccccCcccCccccccCcccc
Q 048351          528 EENSISGNIPAWIGESLLNLVVLDLRSN-RFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAI  606 (850)
Q Consensus       528 ~~N~l~~~ip~~~~~~l~~L~~L~L~~N-~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~  606 (850)
                      ++|+++ .+|...+..+++|++|++++| .+....+..|..+++|++|++++|+++ .+|. +..               
T Consensus       144 ~~N~i~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~-~~~---------------  205 (440)
T 3zyj_A          144 RNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN-LTP---------------  205 (440)
T ss_dssp             CSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCCC-CTT---------------
T ss_pred             CCCccc-ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-cccc-cCC---------------
Confidence            999998 666655557899999999985 444444457888999999999999987 3332 222               


Q ss_pred             ccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCCCc
Q 048351          607 TFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITP  686 (850)
Q Consensus       607 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~  686 (850)
                                                          +++|+.|+|++|++++..|..|.++++|+.|+|++|++++..+.
T Consensus       206 ------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  249 (440)
T 3zyj_A          206 ------------------------------------LIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERN  249 (440)
T ss_dssp             ------------------------------------CSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTT
T ss_pred             ------------------------------------CcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChh
Confidence                                                23448999999999998899999999999999999999999999


Q ss_pred             cccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCCcCccc
Q 048351          687 KIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGK  731 (850)
Q Consensus       687 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~  731 (850)
                      .|.++++|+.|||++|++++..+..|..+++|++|++++|++.+.
T Consensus       250 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd  294 (440)
T 3zyj_A          250 AFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCN  294 (440)
T ss_dssp             SSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECS
T ss_pred             hhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCC
Confidence            999999999999999999988888899999999999999999864

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.95  E-value=1e-27  Score=253.23  Aligned_cols=228  Identities=20%  Similarity=0.154  Sum_probs=180.8

Q ss_pred             cEEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCCCccccccCccEEeccCCccccCCchhhcCCCCcCeeccccc
Q 048351          451 VYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEEN  530 (850)
Q Consensus       451 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N  530 (850)
                      ++++.+++.++ .+|..+  .++|++|++++|.+++..+..|..+++|++|++++|.+++..|..|..+++|++|++++|
T Consensus        14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n   90 (285)
T 1ozn_A           14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (285)
T ss_dssp             CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence            56777777776 445433  457888888888888766677888888888888888888777778888888888888888


Q ss_pred             c-ceeec-chhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccCcccCCccccCcccCccccccCcccccc
Q 048351          531 S-ISGNI-PAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITF  608 (850)
Q Consensus       531 ~-l~~~i-p~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~  608 (850)
                      + +. .+ |..+. .+++|++|++++|.+++..|..+..+++|++|++++|++++..+..+.++++|             
T Consensus        91 ~~l~-~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-------------  155 (285)
T 1ozn_A           91 AQLR-SVDPATFH-GLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNL-------------  155 (285)
T ss_dssp             TTCC-CCCTTTTT-TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-------------
T ss_pred             CCcc-ccCHHHhc-CCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCc-------------
Confidence            6 65 45 44443 68888888888888887777788888888888888888886655556555544             


Q ss_pred             ccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCCCccc
Q 048351          609 SYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKI  688 (850)
Q Consensus       609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l  688 (850)
                                                            +.|+|++|++++..+..+..+++|+.|+|++|++++..|..+
T Consensus       156 --------------------------------------~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  197 (285)
T 1ozn_A          156 --------------------------------------THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAF  197 (285)
T ss_dssp             --------------------------------------CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTT
T ss_pred             --------------------------------------cEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHc
Confidence                                                  788888888887777778888899999999999988888888


Q ss_pred             cccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCCcCcccCCC
Q 048351          689 GQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGKIPT  734 (850)
Q Consensus       689 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~  734 (850)
                      +++++|+.|++++|++++..+..+..+++|++|++++|++.+..+.
T Consensus       198 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~  243 (285)
T 1ozn_A          198 RDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA  243 (285)
T ss_dssp             TTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG
T ss_pred             cCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCc
Confidence            8899999999999999987777888889999999999988876553

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.95  E-value=6.1e-27  Score=263.41  Aligned_cols=252  Identities=22%  Similarity=0.246  Sum_probs=217.7

Q ss_pred             CccEEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCCCccccccCccEEeccCCccccCCchhhcCCCCcCeeccc
Q 048351          449 NLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALE  528 (850)
Q Consensus       449 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~  528 (850)
                      ....++.+++.++ .+|..+.  ++++.|+|++|++++..+..|.++++|++|+|++|++++..+..|.++++|++|+|+
T Consensus        44 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~  120 (440)
T 3zyj_A           44 QFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF  120 (440)
T ss_dssp             TSCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred             CCCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence            4567888888888 6676554  689999999999998888999999999999999999998888999999999999999


Q ss_pred             cccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccCcccCC-ccccCcccCccccccCccccc
Q 048351          529 ENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIP-KCFNNFTAMTQERSYNSSAIT  607 (850)
Q Consensus       529 ~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~l~~~~~~~~~  607 (850)
                      +|+++ .+|...+..+++|++|++++|.+++..+..|..+++|++|++++|+..+.++ ..|.++++|            
T Consensus       121 ~n~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L------------  187 (440)
T 3zyj_A          121 DNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNL------------  187 (440)
T ss_dssp             SSCCS-SCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSC------------
T ss_pred             CCcCC-eeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhccccc------------
Confidence            99998 6776555579999999999999998888889999999999999955443443 345554444            


Q ss_pred             cccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCCCcc
Q 048351          608 FSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPK  687 (850)
Q Consensus       608 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~  687 (850)
                                                             ++|+|++|+++ .+| .+..+++|+.|+|++|++++..|..
T Consensus       188 ---------------------------------------~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~  226 (440)
T 3zyj_A          188 ---------------------------------------RYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGS  226 (440)
T ss_dssp             ---------------------------------------CEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTT
T ss_pred             ---------------------------------------CeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhh
Confidence                                                   89999999998 555 4889999999999999999999999


Q ss_pred             ccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCCcCcccCCCC-CcCCCcCccccCCCCCCCCCCC
Q 048351          688 IGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGKIPTG-TQLQSFNASVYDGNPELCGLPL  757 (850)
Q Consensus       688 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~lc~~~~  757 (850)
                      |.++++|+.|+|++|++++..|..|..+++|++||+++|++++..|.. ..+..+....+.+||+.|+|.+
T Consensus       227 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l  297 (440)
T 3zyj_A          227 FQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDI  297 (440)
T ss_dssp             TTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSSTT
T ss_pred             hccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCCc
Confidence            999999999999999999999999999999999999999999654432 3456677778999999999853

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.94  E-value=1.9e-26  Score=260.38  Aligned_cols=250  Identities=21%  Similarity=0.213  Sum_probs=216.9

Q ss_pred             cCEEEccCCcCcccCCCCCCCCcEEEccCCcCcCccccccccCCCCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCc
Q 048351          404 SPGIDISSNHLEGPSPSLPSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNN  483 (850)
Q Consensus       404 L~~L~l~~N~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~  483 (850)
                      ...++.+++.++..+...++++++|++++|.+++..+.... .+++|++|+|++|.+++..+..|.++++|++|+|++|.
T Consensus        56 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~-~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~  134 (452)
T 3zyi_A           56 FSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFR-HLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW  134 (452)
T ss_dssp             SCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             CcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcC-CCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc
Confidence            34566666666665555567788888888888776544332 56899999999999998888999999999999999999


Q ss_pred             ccccCCCccccccCccEEeccCCccccCCchhhcCCCCcCeeccccccceeecchhHHhcCCCCCEEEccCCccccccCc
Q 048351          484 FSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPF  563 (850)
Q Consensus       484 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~  563 (850)
                      +++..+..|..+++|++|++++|++++..+..|.++++|+.|++++|...+.++...+.++++|++|++++|++++. | 
T Consensus       135 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-  212 (452)
T 3zyi_A          135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-  212 (452)
T ss_dssp             CSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-
T ss_pred             CCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-
Confidence            99877778999999999999999999777778999999999999996555588887666899999999999999854 4 


Q ss_pred             CcCCCCCcceeecccccCcccCCccccCcccCccccccCccccccccccCCCcccCccceEeeEEEEEecCccccccccc
Q 048351          564 QLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTL  643 (850)
Q Consensus       564 ~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  643 (850)
                      .+..+++|+.|+|++|++++..|..|.++++|                                                
T Consensus       213 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L------------------------------------------------  244 (452)
T 3zyi_A          213 NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSL------------------------------------------------  244 (452)
T ss_dssp             CCTTCTTCCEEECTTSCCSEECGGGGTTCTTC------------------------------------------------
T ss_pred             cccccccccEEECcCCcCcccCcccccCccCC------------------------------------------------
Confidence            58899999999999999998888888777665                                                


Q ss_pred             ccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCCCccccccCCCCeeeCCCCcCccc
Q 048351          644 GLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGG  707 (850)
Q Consensus       644 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~  707 (850)
                         +.|+|++|++++..|..|.++++|+.|+|++|++++..+..|..+++|+.|+|++|.+...
T Consensus       245 ---~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd  305 (452)
T 3zyi_A          245 ---KKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCD  305 (452)
T ss_dssp             ---CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECS
T ss_pred             ---CEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCC
Confidence               8999999999999999999999999999999999988888899999999999999998743

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=6.3e-27  Score=247.23  Aligned_cols=235  Identities=20%  Similarity=0.212  Sum_probs=175.7

Q ss_pred             CCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCCCccccccCccEEeccCCc-cccCCchhhcCCCCcCeec
Q 048351          448 QNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNN-FSGELPSLLKNFTHLRVVA  526 (850)
Q Consensus       448 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~  526 (850)
                      ++|++|++++|.+++..+..|..+++|++|++++|.+++..|..+..+++|++|++++|+ +....|..+..+++|++|+
T Consensus        32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~  111 (285)
T 1ozn_A           32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (285)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence            567778888887776666777778888888888888877777778888888888888886 6665577788888888888


Q ss_pred             cccccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccCcccCCccccCcccCccccccCcccc
Q 048351          527 LEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAI  606 (850)
Q Consensus       527 L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~  606 (850)
                      +++|++++..|..+. .+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|           
T Consensus       112 l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-----------  179 (285)
T 1ozn_A          112 LDRCGLQELGPGLFR-GLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSL-----------  179 (285)
T ss_dssp             CTTSCCCCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC-----------
T ss_pred             CCCCcCCEECHhHhh-CCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCcccc-----------
Confidence            888888744444444 67888888888888887666667888888888888888876555555555444           


Q ss_pred             ccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCCCc
Q 048351          607 TFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITP  686 (850)
Q Consensus       607 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~  686 (850)
                                                              +.|+|++|++++..|..+..+++|+.|++++|++++..+.
T Consensus       180 ----------------------------------------~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  219 (285)
T 1ozn_A          180 ----------------------------------------DRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTE  219 (285)
T ss_dssp             ----------------------------------------CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHH
T ss_pred             ----------------------------------------CEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHH
Confidence                                                    7788888888888788888888888888888888876666


Q ss_pred             cccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCCcCcccCCCC
Q 048351          687 KIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGKIPTG  735 (850)
Q Consensus       687 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~  735 (850)
                      .+..+++|+.|++++|.+....+.. .-...++.++.+.|.+.+..|..
T Consensus       220 ~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~  267 (285)
T 1ozn_A          220 ALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQR  267 (285)
T ss_dssp             HHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGG
T ss_pred             HcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchH
Confidence            7888888888888888887654421 11123444557778888888754

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.94  E-value=2.5e-28  Score=286.40  Aligned_cols=238  Identities=12%  Similarity=-0.004  Sum_probs=148.8

Q ss_pred             CCCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCC-CccccccCccEEeccCCccccCCchhhcCCCCcCee
Q 048351          447 GQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIP-NSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVV  525 (850)
Q Consensus       447 ~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  525 (850)
                      +++|+.|+++++.. +.+|..+..+++|++|++++|.+++... ..+..+++|++|+++++...+.++..+..+++|++|
T Consensus       269 ~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L  347 (592)
T 3ogk_B          269 PRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRL  347 (592)
T ss_dssp             CTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEE
T ss_pred             cccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEE
Confidence            35677777776533 3556666677777777777777654332 234567777777777333333344445667777777


Q ss_pred             cccc-----------ccceeecchhHHhcCCCCCEEEccCCccccccCcCcCC-CCCcceeecc----cccCcccCCccc
Q 048351          526 ALEE-----------NSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCH-LADIQILDLS----LNNISGNIPKCF  589 (850)
Q Consensus       526 ~L~~-----------N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~-l~~L~~L~Ls----~N~l~~~~p~~~  589 (850)
                      ++++           |.+++.-...+...+++|++|+++.|.+++..+..+.. +++|+.|+++    .|.+++...+. 
T Consensus       348 ~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~-  426 (592)
T 3ogk_B          348 RIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDN-  426 (592)
T ss_dssp             EEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHH-
T ss_pred             EeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHH-
Confidence            7772           45553323333335777777777777777665555544 6777777775    44554321000 


Q ss_pred             cCcccCccccccCccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCC--CCCCCChhhhhc-
Q 048351          590 NNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSN--KLGGEVPEEIMD-  666 (850)
Q Consensus       590 ~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N--~l~~~~p~~l~~-  666 (850)
                                                                   ........+++|+.|+|+++  .+++..+..++. 
T Consensus       427 ---------------------------------------------~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~  461 (592)
T 3ogk_B          427 ---------------------------------------------GVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQY  461 (592)
T ss_dssp             ---------------------------------------------HHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHS
T ss_pred             ---------------------------------------------HHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHh
Confidence                                                         00011233555688888754  366666666655 


Q ss_pred             cccCCeEecCCCcCccC-CCccccccCCCCeeeCCCCcCccc-CcccccCCCCCCEEEcCCCcCccc
Q 048351          667 LVGLIGLNLSRNNLTGY-ITPKIGQLQSLDFLDLSRNQFSGG-IPSSLSQVNRLSVMDLSHNNLSGK  731 (850)
Q Consensus       667 l~~L~~L~Ls~N~l~~~-ip~~l~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~ls~N~l~g~  731 (850)
                      +++|+.|+|++|++++. ++..+..+++|++|+|++|.+++. ++.....+++|++|++++|++++.
T Consensus       462 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~  528 (592)
T 3ogk_B          462 SPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT  528 (592)
T ss_dssp             CTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred             CccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence            78888888888888763 344557788888888888888755 344445688888888888887743

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.94  E-value=1.3e-27  Score=255.65  Aligned_cols=110  Identities=22%  Similarity=0.184  Sum_probs=63.2

Q ss_pred             CCccEEEccCCCCCCCCCccc--ccCCCCCEEEcCCCcccccCCCccccc-----cCccEEeccCCccccCCchhhcCCC
Q 048351          448 QNLVYLDLSSNLLSGKLPDCW--LQFNMLRILNLANNNFSGKIPNSCGYL-----QKMLTLSLHHNNFSGELPSLLKNFT  520 (850)
Q Consensus       448 ~~L~~L~Ls~n~l~~~~p~~~--~~l~~L~~L~Ls~N~l~~~~p~~~~~l-----~~L~~L~Ls~N~l~~~~p~~l~~l~  520 (850)
                      ++|++|++++|.+++.+|..+  ..+++|++|++++|++++. |..++.+     ++|++|++++|++++..|..+..++
T Consensus        95 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~  173 (312)
T 1wwl_A           95 SGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP  173 (312)
T ss_dssp             SCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCS
T ss_pred             CCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCC
Confidence            566666666666666666554  5666666666666666655 5555555     5666666666666655556666666


Q ss_pred             CcCeeccccccceeec--chhH-HhcCCCCCEEEccCCccc
Q 048351          521 HLRVVALEENSISGNI--PAWI-GESLLNLVVLDLRSNRFY  558 (850)
Q Consensus       521 ~L~~L~L~~N~l~~~i--p~~~-~~~l~~L~~L~L~~N~l~  558 (850)
                      +|++|++++|++.+.+  |..+ +..+++|++|++++|+++
T Consensus       174 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~  214 (312)
T 1wwl_A          174 ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGME  214 (312)
T ss_dssp             SCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCC
T ss_pred             CCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCc
Confidence            6666666666655432  2121 113444444444444444

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.94  E-value=3.1e-28  Score=260.60  Aligned_cols=224  Identities=21%  Similarity=0.236  Sum_probs=165.4

Q ss_pred             ccEEEccCCCCC-CCCCcccc-------cCCCCCEEEcCCCcccccCCCcc--ccccCccEEeccCCccccCCchhhcCC
Q 048351          450 LVYLDLSSNLLS-GKLPDCWL-------QFNMLRILNLANNNFSGKIPNSC--GYLQKMLTLSLHHNNFSGELPSLLKNF  519 (850)
Q Consensus       450 L~~L~Ls~n~l~-~~~p~~~~-------~l~~L~~L~Ls~N~l~~~~p~~~--~~l~~L~~L~Ls~N~l~~~~p~~l~~l  519 (850)
                      |+.|++++|.+. ..+|..+.       ++++|++|++++|.+++.+|..+  ..+++|++|++++|++++. |..+..+
T Consensus        65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l  143 (312)
T 1wwl_A           65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAEL  143 (312)
T ss_dssp             HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHH
T ss_pred             HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHH
Confidence            777777777773 34555554       67888888888888888777765  7788888888888888866 7767666


Q ss_pred             -----CCcCeeccccccceeecchhHHhcCCCCCEEEccCCcccccc--CcCc--CCCCCcceeecccccCccc--CCcc
Q 048351          520 -----THLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKI--PFQL--CHLADIQILDLSLNNISGN--IPKC  588 (850)
Q Consensus       520 -----~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~--p~~l--~~l~~L~~L~Ls~N~l~~~--~p~~  588 (850)
                           ++|++|++++|++++..|..+. .+++|++|++++|++.+.+  |..+  ..+++|++|++++|++++.  ++..
T Consensus       144 ~~~~~~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  222 (312)
T 1wwl_A          144 QQWLKPGLKVLSIAQAHSLNFSCEQVR-VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSA  222 (312)
T ss_dssp             HTTCCTTCCEEEEESCSCCCCCTTTCC-CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHH
T ss_pred             HHhhcCCCcEEEeeCCCCccchHHHhc-cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHH
Confidence                 7888888888888754445554 6888888888888876652  2233  6778888888888887631  1110


Q ss_pred             ccCcccCccccccCccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCCh-hhhhcc
Q 048351          589 FNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVP-EEIMDL  667 (850)
Q Consensus       589 ~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l  667 (850)
                                                                        ....++.|+.|+|++|++++.+| ..+..+
T Consensus       223 --------------------------------------------------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l  252 (312)
T 1wwl_A          223 --------------------------------------------------LAAARVQLQGLDLSHNSLRDAAGAPSCDWP  252 (312)
T ss_dssp             --------------------------------------------------HHHTTCCCSEEECTTSCCCSSCCCSCCCCC
T ss_pred             --------------------------------------------------HHhcCCCCCEEECCCCcCCcccchhhhhhc
Confidence                                                              11223445888888888888775 456667


Q ss_pred             ccCCeEecCCCcCccCCCccccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCCcCcc
Q 048351          668 VGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSG  730 (850)
Q Consensus       668 ~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g  730 (850)
                      ++|+.|+|++|+++ .+|..+.  ++|++|||++|++++. |. +..+++|++|++++|++++
T Consensus       253 ~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          253 SQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             TTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred             CCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence            88888888888888 6777766  7888888888888866 55 8888888888888888875

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.93  E-value=4.5e-25  Score=255.28  Aligned_cols=242  Identities=24%  Similarity=0.274  Sum_probs=147.9

Q ss_pred             CCcCEEEccCCcCcccCCCCCCCCcEEEccCCcCcCccccccccCCCCccEEEccCCCCCCCCCcccccCCCCCEEEcCC
Q 048351          402 LESPGIDISSNHLEGPSPSLPSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLAN  481 (850)
Q Consensus       402 ~~L~~L~l~~N~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~  481 (850)
                      ++++.|++++|.++.. |..+++|++|++++|++++...     .+++|++|++++|.+++ +|.   .+++|+.|++++
T Consensus        61 ~~L~~L~L~~N~l~~l-p~~l~~L~~L~Ls~N~l~~lp~-----~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~  130 (622)
T 3g06_A           61 AHITTLVIPDNNLTSL-PALPPELRTLEVSGNQLTSLPV-----LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFG  130 (622)
T ss_dssp             TTCSEEEECSCCCSCC-CCCCTTCCEEEECSCCCSCCCC-----CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECCS
T ss_pred             CCCcEEEecCCCCCCC-CCcCCCCCEEEcCCCcCCcCCC-----CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECCC
Confidence            3444444444444432 2244555555555555553222     23566777777776664 333   456677777777


Q ss_pred             CcccccCCCccccccCccEEeccCCccccCCchhhcCCCCcCeeccccccceeecchhHHhcCCCCCEEEccCCcccccc
Q 048351          482 NNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKI  561 (850)
Q Consensus       482 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~  561 (850)
                      |++++ +|..   +++|++|++++|++++ +|.   .+++|+.|++++|+++ .+|    ..+++|+.|++++|.+++ +
T Consensus       131 N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~-~l~----~~~~~L~~L~Ls~N~l~~-l  196 (622)
T 3g06_A          131 NQLTS-LPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLT-SLP----MLPSGLQELSVSDNQLAS-L  196 (622)
T ss_dssp             SCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSC-C
T ss_pred             CCCCc-CCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCC-CCc----ccCCCCcEEECCCCCCCC-C
Confidence            77663 4432   3667777777777763 333   2456777777777776 466    135677777777777764 3


Q ss_pred             CcCcCCCCCcceeecccccCcccCCccccCcccCccccccCccccccccccCCCcccCccceEeeEEEEEecCccccccc
Q 048351          562 PFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKN  641 (850)
Q Consensus       562 p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  641 (850)
                      |..   +++|+.|++++|.++. +|..+                                                    
T Consensus       197 ~~~---~~~L~~L~L~~N~l~~-l~~~~----------------------------------------------------  220 (622)
T 3g06_A          197 PTL---PSELYKLWAYNNRLTS-LPALP----------------------------------------------------  220 (622)
T ss_dssp             CCC---CTTCCEEECCSSCCSS-CCCCC----------------------------------------------------
T ss_pred             CCc---cchhhEEECcCCcccc-cCCCC----------------------------------------------------
Confidence            332   3567777777777762 23211                                                    


Q ss_pred             ccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCCCccccccCCCCeeeCCCCcCcccCcccccCCCCCCEE
Q 048351          642 TLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVM  721 (850)
Q Consensus       642 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  721 (850)
                        ++|+.|+|++|++++ +|   ..+++|+.|+|++|+|++ +|.   .+++|+.|+|++|+|+ .+|..+..+++|+.|
T Consensus       221 --~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L  289 (622)
T 3g06_A          221 --SGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTV  289 (622)
T ss_dssp             --TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEE
T ss_pred             --CCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEE
Confidence              123677777777774 44   345677777777777774 444   4567777777777777 567777777777777


Q ss_pred             EcCCCcCcccCCC
Q 048351          722 DLSHNNLSGKIPT  734 (850)
Q Consensus       722 ~ls~N~l~g~iP~  734 (850)
                      ++++|+++|.+|.
T Consensus       290 ~L~~N~l~~~~~~  302 (622)
T 3g06_A          290 NLEGNPLSERTLQ  302 (622)
T ss_dssp             ECCSCCCCHHHHH
T ss_pred             EecCCCCCCcCHH
Confidence            7777777776654

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.93  E-value=1.7e-26  Score=262.09  Aligned_cols=220  Identities=23%  Similarity=0.198  Sum_probs=188.9

Q ss_pred             CCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCCCccccccCccEEeccCCccccCCchhhcCCCCcCeecc
Q 048351          448 QNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVAL  527 (850)
Q Consensus       448 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L  527 (850)
                      ++|++|+|++|.+++..|..|..+++|++|+|++|.+++..|  +..+++|++|++++|.+++..+     .++|++|++
T Consensus        34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L  106 (487)
T 3oja_A           34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHA  106 (487)
T ss_dssp             GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEEC
T ss_pred             CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEEC
Confidence            589999999999998888899999999999999999997766  8899999999999999985433     389999999


Q ss_pred             ccccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccCcccCCcccc-CcccCccccccCcccc
Q 048351          528 EENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFN-NFTAMTQERSYNSSAI  606 (850)
Q Consensus       528 ~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~l~~~~~~~~  606 (850)
                      ++|.+++..+.    .+++|++|++++|.+++..|..+..+++|++|+|++|.+++.+|..+. .++.            
T Consensus       107 ~~N~l~~~~~~----~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~------------  170 (487)
T 3oja_A          107 ANNNISRVSCS----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT------------  170 (487)
T ss_dssp             CSSCCCCEEEC----CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTT------------
T ss_pred             cCCcCCCCCcc----ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCc------------
Confidence            99999854443    478999999999999999898999999999999999999987776654 3444            


Q ss_pred             ccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCCCc
Q 048351          607 TFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITP  686 (850)
Q Consensus       607 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~  686 (850)
                                                             |+.|+|++|.+++..+  +..+++|+.|+|++|++++.+ +
T Consensus       171 ---------------------------------------L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~-~  208 (487)
T 3oja_A          171 ---------------------------------------LEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMG-P  208 (487)
T ss_dssp             ---------------------------------------CCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEEC-G
T ss_pred             ---------------------------------------ccEEecCCCccccccc--cccCCCCCEEECCCCCCCCCC-H
Confidence                                                   4899999999987633  346899999999999999754 4


Q ss_pred             cccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCCcCc-ccCC
Q 048351          687 KIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLS-GKIP  733 (850)
Q Consensus       687 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~-g~iP  733 (850)
                      .+..+++|+.|||++|++++ +|..+..+++|++|++++|++. +.+|
T Consensus       209 ~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~  255 (487)
T 3oja_A          209 EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLR  255 (487)
T ss_dssp             GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHH
T ss_pred             hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchH
Confidence            59999999999999999996 6778999999999999999998 4444

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.93  E-value=1.5e-24  Score=250.82  Aligned_cols=269  Identities=22%  Similarity=0.328  Sum_probs=224.7

Q ss_pred             CCCCEEEccCCcCCCCCchhHhhcCcCCCEEecccCcCcccCChhhhhhccCCcCEEEccCCcCcccCCCCCCCCcEEEc
Q 048351          351 KHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSLPSNAFYIDL  430 (850)
Q Consensus       351 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~L~~L~L  430 (850)
                      .+++.|++++|.++ .+|..+.   ++|++|++++|.++ .+|..+     .+|+.|++++|++++.. ..+++|++|++
T Consensus        40 ~~l~~L~ls~n~L~-~lp~~l~---~~L~~L~L~~N~l~-~lp~~l-----~~L~~L~Ls~N~l~~lp-~~l~~L~~L~L  108 (622)
T 3g06_A           40 NGNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLT-SLPALP-----PELRTLEVSGNQLTSLP-VLPPGLLELSI  108 (622)
T ss_dssp             HCCCEEECCSSCCS-CCCSCCC---TTCSEEEECSCCCS-CCCCCC-----TTCCEEEECSCCCSCCC-CCCTTCCEEEE
T ss_pred             CCCcEEEecCCCcC-ccChhhC---CCCcEEEecCCCCC-CCCCcC-----CCCCEEEcCCCcCCcCC-CCCCCCCEEEC
Confidence            46899999999998 5666543   58999999999998 455533     89999999999998644 48899999999


Q ss_pred             cCCcCcCccccccccCCCCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCCCccccccCccEEeccCCcccc
Q 048351          431 SKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSG  510 (850)
Q Consensus       431 s~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  510 (850)
                      ++|.+++...     .+++|+.|++++|++++ +|..   +++|++|++++|++++ +|.   .+++|+.|++++|++++
T Consensus       109 s~N~l~~l~~-----~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~  175 (622)
T 3g06_A          109 FSNPLTHLPA-----LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS  175 (622)
T ss_dssp             CSCCCCCCCC-----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC
T ss_pred             cCCcCCCCCC-----CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC
Confidence            9999998544     34789999999999985 5543   4899999999999985 454   35789999999999995


Q ss_pred             CCchhhcCCCCcCeeccccccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccCcccCCcccc
Q 048351          511 ELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFN  590 (850)
Q Consensus       511 ~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~  590 (850)
                       +|   ..+++|+.|++++|+++ .+|.    .+++|+.|++++|.++ .+|..   +++|+.|++++|++++ +|.   
T Consensus       176 -l~---~~~~~L~~L~Ls~N~l~-~l~~----~~~~L~~L~L~~N~l~-~l~~~---~~~L~~L~Ls~N~L~~-lp~---  238 (622)
T 3g06_A          176 -LP---MLPSGLQELSVSDNQLA-SLPT----LPSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS-LPV---  238 (622)
T ss_dssp             -CC---CCCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSC-CCC---
T ss_pred             -Cc---ccCCCCcEEECCCCCCC-CCCC----ccchhhEEECcCCccc-ccCCC---CCCCCEEEccCCccCc-CCC---
Confidence             66   55789999999999998 5775    3579999999999998 45543   4789999999999985 441   


Q ss_pred             CcccCccccccCccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccC
Q 048351          591 NFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGL  670 (850)
Q Consensus       591 ~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L  670 (850)
                      .++                                                   +|+.|+|++|+|+ .+|.   .+++|
T Consensus       239 ~l~---------------------------------------------------~L~~L~Ls~N~L~-~lp~---~~~~L  263 (622)
T 3g06_A          239 LPS---------------------------------------------------ELKELMVSGNRLT-SLPM---LPSGL  263 (622)
T ss_dssp             CCT---------------------------------------------------TCCEEECCSSCCS-CCCC---CCTTC
T ss_pred             CCC---------------------------------------------------cCcEEECCCCCCC-cCCc---ccccC
Confidence            222                                                   3489999999999 4665   67899


Q ss_pred             CeEecCCCcCccCCCccccccCCCCeeeCCCCcCcccCcccccCCC
Q 048351          671 IGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVN  716 (850)
Q Consensus       671 ~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  716 (850)
                      +.|+|++|+|+ .+|..+.++++|+.|+|++|.+++.+|..+..++
T Consensus       264 ~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~  308 (622)
T 3g06_A          264 LSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT  308 (622)
T ss_dssp             CEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred             cEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence            99999999999 6799999999999999999999999999887765

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.93  E-value=7.8e-25  Score=229.98  Aligned_cols=228  Identities=21%  Similarity=0.186  Sum_probs=183.9

Q ss_pred             EEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCCCccccccCccEEeccCCccccCCchhhcCCCCcCeecccccc
Q 048351          452 YLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENS  531 (850)
Q Consensus       452 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~  531 (850)
                      ..+-.+..+. .+|..+.  ++|++|++++|.+++..+..|..+++|++|++++|++++..+..|.++++|++|++++|+
T Consensus        11 ~~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~   87 (276)
T 2z62_A           11 TYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP   87 (276)
T ss_dssp             EEECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred             eEEecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc
Confidence            3455555555 4555442  468888888888887777678888888888888888887777788888888888888888


Q ss_pred             ceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccCccc-CCccccCcccCccccccCcccccccc
Q 048351          532 ISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGN-IPKCFNNFTAMTQERSYNSSAITFSY  610 (850)
Q Consensus       532 l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~l~~~~~~~~~~~~  610 (850)
                      +++..+..+. ++++|++|++++|.+++..+..+..+++|++|++++|++++. +|..+.++++|               
T Consensus        88 l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L---------------  151 (276)
T 2z62_A           88 IQSLALGAFS-GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL---------------  151 (276)
T ss_dssp             CCEECTTTTT-TCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTC---------------
T ss_pred             cCccChhhhc-CCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCC---------------
Confidence            8854444444 688999999999999877777788999999999999998863 46666655554               


Q ss_pred             ccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCC----eEecCCCcCccCCCc
Q 048351          611 AVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLI----GLNLSRNNLTGYITP  686 (850)
Q Consensus       611 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~----~L~Ls~N~l~~~ip~  686 (850)
                                                          +.|+|++|++++..+..+..+++|+    .|++++|++++..+.
T Consensus       152 ------------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~  195 (276)
T 2z62_A          152 ------------------------------------EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG  195 (276)
T ss_dssp             ------------------------------------CEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTT
T ss_pred             ------------------------------------CEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCcc
Confidence                                                8899999999988888888888887    899999999976665


Q ss_pred             cccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCCcCcccCCCC
Q 048351          687 KIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGKIPTG  735 (850)
Q Consensus       687 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~  735 (850)
                      .+.. .+|+.|+|++|++++..+..|..+++|++|++++|+++|..|.-
T Consensus       196 ~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l  243 (276)
T 2z62_A          196 AFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI  243 (276)
T ss_dssp             SSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTT
T ss_pred             ccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCch
Confidence            5554 58999999999999888888899999999999999999887754

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.92  E-value=3.9e-26  Score=244.81  Aligned_cols=217  Identities=23%  Similarity=0.193  Sum_probs=170.1

Q ss_pred             CCCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCCCccccccCccEEeccCCccccCCchhhcCCCCcCeec
Q 048351          447 GQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVA  526 (850)
Q Consensus       447 ~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  526 (850)
                      +++|++|++++|.+++..|..|..+++|++|++++|.+++..+  +..+++|++|++++|++++..     ..++|++|+
T Consensus        33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~~L~  105 (317)
T 3o53_A           33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLH  105 (317)
T ss_dssp             GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE-----ECTTCCEEE
T ss_pred             CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc-----CCCCcCEEE
Confidence            3678999999999988777888899999999999999887654  888899999999999887432     347899999


Q ss_pred             cccccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccCcccCCcccc-CcccCccccccCccc
Q 048351          527 LEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFN-NFTAMTQERSYNSSA  605 (850)
Q Consensus       527 L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~l~~~~~~~  605 (850)
                      +++|++++..+.    .+++|++|++++|++++..+..+..+++|++|++++|.+++..|..+. .++            
T Consensus       106 l~~n~l~~~~~~----~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~------------  169 (317)
T 3o53_A          106 AANNNISRVSCS----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD------------  169 (317)
T ss_dssp             CCSSCCSEEEEC----CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTT------------
T ss_pred             CCCCccCCcCcc----ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccC------------
Confidence            999998844332    367899999999999888787888889999999999998876555442 333            


Q ss_pred             cccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCCC
Q 048351          606 ITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYIT  685 (850)
Q Consensus       606 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip  685 (850)
                                                             .|++|+|++|++++. |. ...+++|+.|+|++|++++. |
T Consensus       170 ---------------------------------------~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~l-~  207 (317)
T 3o53_A          170 ---------------------------------------TLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFM-G  207 (317)
T ss_dssp             ---------------------------------------TCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEE-C
T ss_pred             ---------------------------------------cCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCcc-h
Confidence                                                   347888888888755 32 33478888888888888854 4


Q ss_pred             ccccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCCcCc
Q 048351          686 PKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLS  729 (850)
Q Consensus       686 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~  729 (850)
                      ..+..+++|+.|+|++|+++ .+|..+..+++|++|++++|+++
T Consensus       208 ~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~  250 (317)
T 3o53_A          208 PEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH  250 (317)
T ss_dssp             GGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCB
T ss_pred             hhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCcc
Confidence            45888888888888888888 46777888888888888888887

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.92  E-value=2.4e-28  Score=286.63  Aligned_cols=418  Identities=12%  Similarity=0.053  Sum_probs=217.3

Q ss_pred             cccCCCCCCEEeCCCCCCCC-C-CCCc------------ccCCCCCCCEEeCCCCCCCCCCCcccC-CCCCCcEEEccCC
Q 048351          118 ALLKLHYLRHLDLSFNNFSG-S-QIPM------------FIGSLSKLEYLDLFAASFSGPIPPLLG-NLSRLQYLSLGYN  182 (850)
Q Consensus       118 ~l~~l~~L~~L~Ls~n~l~~-~-~~p~------------~~~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~Ls~N  182 (850)
                      .+.++++|++|+++++.... . ..|.            ....+++|++|+|++|.+++..+..+. .+++|++|++++|
T Consensus        61 ~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~  140 (594)
T 2p1m_B           61 VIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSC  140 (594)
T ss_dssp             HHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESC
T ss_pred             HHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCc
Confidence            46678899999999875321 0 0121            123577888888888888776666664 6888888888887


Q ss_pred             CCCCCC-CccccccCCCccEEeCCCCCCCCCc-c-hhhhhcCCCCCcEEEccCCCCCCCCCccccccc-cCCCCcccEEE
Q 048351          183 KLLRAG-NLDWISQLFSLRYLDLSSCNLSKST-D-WLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSH-LNSSPSLETLG  258 (850)
Q Consensus       183 ~l~~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~-~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~-~~~~~~L~~L~  258 (850)
                      ...... ....+.++++|++|++++|.+++.. . +......+++|++|++++|. . .........+ ..+ ++|++|+
T Consensus       141 ~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~-~~~~~~l~~l~~~~-~~L~~L~  217 (594)
T 2p1m_B          141 EGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-S-EVSFSALERLVTRC-PNLKSLK  217 (594)
T ss_dssp             EEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-S-CCCHHHHHHHHHHC-TTCCEEE
T ss_pred             CCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-C-cCCHHHHHHHHHhC-CCCcEEe
Confidence            321111 1122346788888888888766531 1 12222356677777777765 1 1110000111 122 6677777


Q ss_pred             ccCCCCCCccchhhhcCCCCCCCCCCCCCCcEEEccCCc-------CCcccchhhhcCCCCcEE-EccCCcccccccccc
Q 048351          259 LSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNE-------LDGEIPKFFQNMFKLEGL-SLRGNSLEGVISEHF  330 (850)
Q Consensus       259 Ls~N~l~~~~~~~l~~l~~ip~~l~~l~~L~~L~Ls~N~-------l~~~~p~~l~~l~~L~~L-~L~~N~l~~~~~~~~  330 (850)
                      +++|.-.+.++..          +..+++|++|+++.+.       +.+ ++..+.++++|+.| .+.+....       
T Consensus       218 L~~~~~~~~l~~~----------~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~~-------  279 (594)
T 2p1m_B          218 LNRAVPLEKLATL----------LQRAPQLEELGTGGYTAEVRPDVYSG-LSVALSGCKELRCLSGFWDAVPA-------  279 (594)
T ss_dssp             CCTTSCHHHHHHH----------HHHCTTCSEEECSBCCCCCCHHHHHH-HHHHHHTCTTCCEEECCBTCCGG-------
T ss_pred             cCCCCcHHHHHHH----------HhcCCcceEcccccccCccchhhHHH-HHHHHhcCCCcccccCCcccchh-------
Confidence            7766221112222          3345567777654432       222 33456666667666 23222111       


Q ss_pred             ccccccccCCCCCChhccCCCCCCEEEccCCcCCCCCchhHhhcCcCCCEEecccCcCcccCChhhhhhccCCcCEEEcc
Q 048351          331 FSNFSYLKMGPHFPKWLQTQKHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDIS  410 (850)
Q Consensus       331 ~~~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~l~  410 (850)
                                 .+|..+..+++|+.|++++|.+++.....+...+++|++|++++| +.......+...+ ++|+.|++.
T Consensus       280 -----------~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~-~~L~~L~L~  346 (594)
T 2p1m_B          280 -----------YLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTC-KDLRELRVF  346 (594)
T ss_dssp             -----------GGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHC-TTCCEEEEE
T ss_pred             -----------hHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhC-CCCCEEEEe
Confidence                       123334456777777777777655444443444567777777776 3322222221222 556666663


Q ss_pred             CCcCcccCCCCCCCCcEEEccCCcCcCccccccccCCCCccEEEccCCCCCCCCCcccc-cCCCCCEEEcC--C----Cc
Q 048351          411 SNHLEGPSPSLPSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWL-QFNMLRILNLA--N----NN  483 (850)
Q Consensus       411 ~N~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~Ls--~----N~  483 (850)
                      .+.-.|            ..+.+.+++.........+++|++|+++.|.+++..+..+. .+++|+.|+++  +    |.
T Consensus       347 ~~~~~g------------~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~  414 (594)
T 2p1m_B          347 PSEPFV------------MEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDY  414 (594)
T ss_dssp             CSCTTC------------SSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCT
T ss_pred             cCcccc------------cccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCccc
Confidence            321000            00111222111000001235666666666666544333333 35666666666  2    33


Q ss_pred             cccc-----CCCccccccCccEEeccCCccccCCchhhcC-CCCcCeeccccccceeecchhHHhcCCCCCEEEccCCcc
Q 048351          484 FSGK-----IPNSCGYLQKMLTLSLHHNNFSGELPSLLKN-FTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRF  557 (850)
Q Consensus       484 l~~~-----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~-l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l  557 (850)
                      +++.     ++..+..+++|+.|++++ .+++..+..+.. +++|+.|++++|.+++..+..+...+++|++|++++|.+
T Consensus       415 l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~  493 (594)
T 2p1m_B          415 LTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF  493 (594)
T ss_dssp             TTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC
T ss_pred             ccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC
Confidence            4311     111134556666666655 444433333433 666666666666665444444433566666666666666


Q ss_pred             ccccCc-CcCCCCCcceeecccccCc
Q 048351          558 YGKIPF-QLCHLADIQILDLSLNNIS  582 (850)
Q Consensus       558 ~~~~p~-~l~~l~~L~~L~Ls~N~l~  582 (850)
                      ++.... ....+++|+.|++++|+++
T Consensus       494 ~~~~~~~~~~~l~~L~~L~l~~~~~~  519 (594)
T 2p1m_B          494 GDKALLANASKLETMRSLWMSSCSVS  519 (594)
T ss_dssp             CHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred             cHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence            443322 2334566666777666664

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.92  E-value=5.4e-26  Score=243.77  Aligned_cols=269  Identities=19%  Similarity=0.184  Sum_probs=178.5

Q ss_pred             CcccEEEccCCCCCCccchhhhcCCCCCCCCCCCCCCcEEEccCCcCCcccchhhhcCCCCcEEEccCCccccccccccc
Q 048351          252 PSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFF  331 (850)
Q Consensus       252 ~~L~~L~Ls~N~l~~~~~~~l~~l~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~  331 (850)
                      .+++..+++.+.+......          .+..+++|++|++++|++++..|..|.++++|++|++++|.+++..+    
T Consensus        10 ~~l~i~~ls~~~l~~~~~~----------~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----   75 (317)
T 3o53_A           10 NRYKIEKVTDSSLKQALAS----------LRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD----   75 (317)
T ss_dssp             TEEEEESCCTTTHHHHHHH----------HHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE----
T ss_pred             CceeEeeccccchhhhHHH----------HhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh----
Confidence            4566667776665432211          12345678888888888887777788888888888888888775432    


Q ss_pred             cccccccCCCCCChhccCCCCCCEEEccCCcCCCCCchhHhhcCcCCCEEecccCcCcccCChhhhhhccCCcCEEEccC
Q 048351          332 SNFSYLKMGPHFPKWLQTQKHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISS  411 (850)
Q Consensus       332 ~~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~l~~  411 (850)
                                     +..+++|++|++++|.+++..+.      ++|++|++++|.+++                     
T Consensus        76 ---------------~~~l~~L~~L~Ls~n~l~~l~~~------~~L~~L~l~~n~l~~---------------------  113 (317)
T 3o53_A           76 ---------------LESLSTLRTLDLNNNYVQELLVG------PSIETLHAANNNISR---------------------  113 (317)
T ss_dssp             ---------------ETTCTTCCEEECCSSEEEEEEEC------TTCCEEECCSSCCSE---------------------
T ss_pred             ---------------hhhcCCCCEEECcCCccccccCC------CCcCEEECCCCccCC---------------------
Confidence                           45566677777777666542211      345555555555543                     


Q ss_pred             CcCcccCCCCCCCCcEEEccCCcCcCccccccccCCCCccEEEccCCCCCCCCCcccc-cCCCCCEEEcCCCcccccCCC
Q 048351          412 NHLEGPSPSLPSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWL-QFNMLRILNLANNNFSGKIPN  490 (850)
Q Consensus       412 N~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~  490 (850)
                           ..+..+++|++|++++|.+++..+.... .+++|++|++++|.+++..+..+. .+++|++|++++|.+++. +.
T Consensus       114 -----~~~~~~~~L~~L~l~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~  186 (317)
T 3o53_A          114 -----VSCSRGQGKKNIYLANNKITMLRDLDEG-CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG  186 (317)
T ss_dssp             -----EEECCCSSCEEEECCSSCCCSGGGBCTG-GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC
T ss_pred             -----cCccccCCCCEEECCCCCCCCccchhhh-ccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc
Confidence                 3333344555666666666554432221 346788888888888776666553 678888888888888755 22


Q ss_pred             ccccccCccEEeccCCccccCCchhhcCCCCcCeeccccccceeecchhHHhcCCCCCEEEccCCccc-cccCcCcCCCC
Q 048351          491 SCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFY-GKIPFQLCHLA  569 (850)
Q Consensus       491 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~-~~~p~~l~~l~  569 (850)
                       ...+++|++|++++|++++ +|..+..+++|++|++++|+++ .+|..+. .+++|++|++++|.+. +.+|..+..++
T Consensus       187 -~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~-~l~~L~~L~l~~N~~~~~~~~~~~~~~~  262 (317)
T 3o53_A          187 -QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALR-FSQNLEHFDLRGNGFHCGTLRDFFSKNQ  262 (317)
T ss_dssp             -CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCC-CCTTCCEEECTTCCCBHHHHHHHHHTCH
T ss_pred             -ccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhh-cCCCCCEEEccCCCccCcCHHHHHhccc
Confidence             2347788888888888874 4445777888888888888887 6777665 5788888888888887 66677777788


Q ss_pred             Ccceeecc-cccCcccCCc
Q 048351          570 DIQILDLS-LNNISGNIPK  587 (850)
Q Consensus       570 ~L~~L~Ls-~N~l~~~~p~  587 (850)
                      .|+.++++ .+.++|..|.
T Consensus       263 ~L~~l~l~~~~~l~~~~~~  281 (317)
T 3o53_A          263 RVQTVAKQTVKKLTGQNEE  281 (317)
T ss_dssp             HHHHHHHHHHHHHHSSSSC
T ss_pred             cceEEECCCchhccCCchh
Confidence            88888887 4455555443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.92  E-value=6.8e-24  Score=221.85  Aligned_cols=205  Identities=21%  Similarity=0.279  Sum_probs=142.3

Q ss_pred             CCEEEcCCCcccccCCCccccccCccEEeccCCccccCCchhhcCCCCcCeeccccccceeecchhHHhcCCCCCEEEcc
Q 048351          474 LRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLR  553 (850)
Q Consensus       474 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~  553 (850)
                      .+.++++++.++ .+|..+.  +++++|++++|++++..+..|.++++|++|++++|+++ .+|..++..+++|++|+++
T Consensus        18 ~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~   93 (270)
T 2o6q_A           18 KNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVT   93 (270)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEECC
T ss_pred             CCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEECC
Confidence            344444444444 2333222  34555555555555444445555555555555555555 4555444456666666666


Q ss_pred             CCccccccCcCcCCCCCcceeecccccCcccCCccccCcccCccccccCccccccccccCCCcccCccceEeeEEEEEec
Q 048351          554 SNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWK  633 (850)
Q Consensus       554 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  633 (850)
                      +|.+++..+..+..+++|++|++++|++++..+..|.++++|                                      
T Consensus        94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L--------------------------------------  135 (270)
T 2o6q_A           94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKL--------------------------------------  135 (270)
T ss_dssp             SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTC--------------------------------------
T ss_pred             CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCC--------------------------------------
Confidence            666665555566677777777777777776665555555444                                      


Q ss_pred             CcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCCCccccccCCCCeeeCCCCcCcccCccccc
Q 048351          634 GSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLS  713 (850)
Q Consensus       634 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~  713 (850)
                                   ++|+|++|++++..+..|..+++|+.|+|++|++++..+..|..+++|++|+|++|++++..+..|.
T Consensus       136 -------------~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  202 (270)
T 2o6q_A          136 -------------TYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFD  202 (270)
T ss_dssp             -------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred             -------------CEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhc
Confidence                         7788888888877667788889999999999999987777889999999999999999987777889


Q ss_pred             CCCCCCEEEcCCCcCcccCC
Q 048351          714 QVNRLSVMDLSHNNLSGKIP  733 (850)
Q Consensus       714 ~l~~L~~L~ls~N~l~g~iP  733 (850)
                      .+++|++|++++|++.+..+
T Consensus       203 ~l~~L~~L~l~~N~~~c~c~  222 (270)
T 2o6q_A          203 SLEKLKMLQLQENPWDCTCN  222 (270)
T ss_dssp             TCTTCCEEECCSSCBCCSSS
T ss_pred             cccCCCEEEecCCCeeCCCc
Confidence            99999999999999987654

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.91  E-value=4.4e-25  Score=250.49  Aligned_cols=221  Identities=19%  Similarity=0.117  Sum_probs=190.4

Q ss_pred             cCCCCCEEEcCCCcccccCCCccccccCccEEeccCCccccCCchhhcCCCCcCeeccccccceeecchhHHhcCCCCCE
Q 048351          470 QFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVV  549 (850)
Q Consensus       470 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~  549 (850)
                      .+++|++|+|++|.+++..|..|..+++|++|+|++|.+++..|  +..+++|++|++++|.++ .+|.     .++|++
T Consensus        32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~~-----~~~L~~  103 (487)
T 3oja_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-ELLV-----GPSIET  103 (487)
T ss_dssp             TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEE-EEEE-----CTTCCE
T ss_pred             cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCC-CCCC-----CCCcCE
Confidence            34489999999999998888899999999999999999997666  899999999999999998 5552     489999


Q ss_pred             EEccCCccccccCcCcCCCCCcceeecccccCcccCCccccCcccCccccccCccccccccccCCCcccCccceEeeEEE
Q 048351          550 LDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVL  629 (850)
Q Consensus       550 L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  629 (850)
                      |++++|.+++..+.   .+++|+.|++++|.+++..|..+.++++|                                  
T Consensus       104 L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L----------------------------------  146 (487)
T 3oja_A          104 LHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRV----------------------------------  146 (487)
T ss_dssp             EECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSE----------------------------------
T ss_pred             EECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCC----------------------------------
Confidence            99999999987664   35789999999999998878777665554                                  


Q ss_pred             EEecCcccccccccccccEEEcCCCCCCCCChhhhh-ccccCCeEecCCCcCccCCCccccccCCCCeeeCCCCcCcccC
Q 048351          630 LTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIM-DLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGI  708 (850)
Q Consensus       630 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~  708 (850)
                                       +.|+|++|++++.+|..+. .+++|+.|+|++|.+++..  .+..+++|+.|+|++|++++.+
T Consensus       147 -----------------~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~~~  207 (487)
T 3oja_A          147 -----------------QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAFMG  207 (487)
T ss_dssp             -----------------EEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCEEC
T ss_pred             -----------------CEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccc--ccccCCCCCEEECCCCCCCCCC
Confidence                             8999999999999999887 7999999999999999873  3456999999999999999765


Q ss_pred             cccccCCCCCCEEEcCCCcCcccCCCCCcCCCcCccccCCCCCCCCC
Q 048351          709 PSSLSQVNRLSVMDLSHNNLSGKIPTGTQLQSFNASVYDGNPELCGL  755 (850)
Q Consensus       709 p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~lc~~  755 (850)
                      |. +..+++|++||+++|++++..+....+..+....+.||+..|++
T Consensus       208 ~~-~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~  253 (487)
T 3oja_A          208 PE-FQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGT  253 (487)
T ss_dssp             GG-GGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHH
T ss_pred             Hh-HcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcc
Confidence            54 89999999999999999974333345566777789999999864

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.91  E-value=2.4e-26  Score=269.56  Aligned_cols=389  Identities=14%  Similarity=0.113  Sum_probs=212.3

Q ss_pred             CcccEEEccCCCCCCccchhhhcCCCCCCCCCCCCCCcEEEccCC-cCCcc-cchhhhcCCCCcEEEccCCccccccccc
Q 048351          252 PSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDN-ELDGE-IPKFFQNMFKLEGLSLRGNSLEGVISEH  329 (850)
Q Consensus       252 ~~L~~L~Ls~N~l~~~~~~~l~~l~~ip~~l~~l~~L~~L~Ls~N-~l~~~-~p~~l~~l~~L~~L~L~~N~l~~~~~~~  329 (850)
                      ++|++|++++|.+++..+..+.         ..+++|++|++++| .++.. ++..+.++++|++|++++|.+++..+..
T Consensus       105 ~~L~~L~L~~~~~~~~~~~~l~---------~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~  175 (594)
T 2p1m_B          105 TWLEEIRLKRMVVTDDCLELIA---------KSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHW  175 (594)
T ss_dssp             TTCCEEEEESCBCCHHHHHHHH---------HHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGG
T ss_pred             CCCCeEEeeCcEEcHHHHHHHH---------HhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHH
Confidence            6788888888877765444321         13567888888887 44432 4445557888888888888776543321


Q ss_pred             cccccccccCCCCCChhccCCCCCCEEEccCCc--CCCCCchhHhhcCcCCCEEecccCcCcccCChhhhhhccCCcCEE
Q 048351          330 FFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAG--ISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGI  407 (850)
Q Consensus       330 ~~~~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~--l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L  407 (850)
                                   ++.....+++|+.|++++|.  +.......+...+++|++|++++|.-.+.++..+ ... ++++.|
T Consensus       176 -------------l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~-~~~-~~L~~L  240 (594)
T 2p1m_B          176 -------------LSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLL-QRA-PQLEEL  240 (594)
T ss_dssp             -------------GGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHH-HHC-TTCSEE
T ss_pred             -------------HHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHH-hcC-CcceEc
Confidence                         12223466788888888876  2211122222334678888888773322355444 232 566666


Q ss_pred             EccCCcCcccCCCCCCCCcEEEccCCcCcCccccccccCCCCccEE-EccCCCCCCCCCcccccCCCCCEEEcCCCcccc
Q 048351          408 DISSNHLEGPSPSLPSNAFYIDLSKNKFSGPISFLCSFSGQNLVYL-DLSSNLLSGKLPDCWLQFNMLRILNLANNNFSG  486 (850)
Q Consensus       408 ~l~~N~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L-~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  486 (850)
                      +++.+..              +++.+.+.+..+..  ..+++|+.| .+.+... +.++..+..+++|+.|++++|.+++
T Consensus       241 ~l~~~~~--------------~~~~~~~~~l~~~l--~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~  303 (594)
T 2p1m_B          241 GTGGYTA--------------EVRPDVYSGLSVAL--SGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQS  303 (594)
T ss_dssp             ECSBCCC--------------CCCHHHHHHHHHHH--HTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCH
T ss_pred             ccccccC--------------ccchhhHHHHHHHH--hcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCH
Confidence            6544321              01112222211111  134566666 3332221 2334444456677777777776554


Q ss_pred             cCC-CccccccCccEEeccCCccc-cCCchhhcCCCCcCeecc---------ccccceeecchhHHhcCCCCCEEEccCC
Q 048351          487 KIP-NSCGYLQKMLTLSLHHNNFS-GELPSLLKNFTHLRVVAL---------EENSISGNIPAWIGESLLNLVVLDLRSN  555 (850)
Q Consensus       487 ~~p-~~~~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~L---------~~N~l~~~ip~~~~~~l~~L~~L~L~~N  555 (850)
                      ... ..+..+++|++|++++| +. ..++.....+++|++|++         +.+.+++.....+...+++|++|+++.|
T Consensus       304 ~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~  382 (594)
T 2p1m_B          304 YDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCR  382 (594)
T ss_dssp             HHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEES
T ss_pred             HHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcC
Confidence            322 12345667777777766 33 222333334677777766         2344443333333334677777777777


Q ss_pred             ccccccCcCcC-CCCCcceeeccc------ccCcccCCccccCcccCccccccCccccccccccCCCcccCccceEeeEE
Q 048351          556 RFYGKIPFQLC-HLADIQILDLSL------NNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIV  628 (850)
Q Consensus       556 ~l~~~~p~~l~-~l~~L~~L~Ls~------N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  628 (850)
                      .+++..+..+. .+++|+.|+++.      |.+++...+.                                        
T Consensus       383 ~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~----------------------------------------  422 (594)
T 2p1m_B          383 QMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDI----------------------------------------  422 (594)
T ss_dssp             CCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHH----------------------------------------
T ss_pred             CcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhh----------------------------------------
Confidence            77655444443 466777777772      2332110000                                        


Q ss_pred             EEEecCcccccccccccccEEEcCCCCCCCCChhhhhc-cccCCeEecCCCcCccCCCccc-cccCCCCeeeCCCCcCcc
Q 048351          629 LLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMD-LVGLIGLNLSRNNLTGYITPKI-GQLQSLDFLDLSRNQFSG  706 (850)
Q Consensus       629 ~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~-l~~L~~L~Ls~N~l~~~ip~~l-~~l~~L~~L~Ls~N~l~~  706 (850)
                            ........++.|+.|+|++ .+++..+..++. +++|+.|+|++|.+++..+..+ ..+++|++|+|++|.+++
T Consensus       423 ------~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~  495 (594)
T 2p1m_B          423 ------GFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGD  495 (594)
T ss_dssp             ------HHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCH
T ss_pred             ------HHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcH
Confidence                  0000112344557777766 566555555555 6777777777777765544444 556777777777777755


Q ss_pred             cCcc-cccCCCCCCEEEcCCCcCc
Q 048351          707 GIPS-SLSQVNRLSVMDLSHNNLS  729 (850)
Q Consensus       707 ~~p~-~l~~l~~L~~L~ls~N~l~  729 (850)
                      ..+. ....+++|++|++++|+++
T Consensus       496 ~~~~~~~~~l~~L~~L~l~~~~~~  519 (594)
T 2p1m_B          496 KALLANASKLETMRSLWMSSCSVS  519 (594)
T ss_dssp             HHHHHTGGGGGGSSEEEEESSCCB
T ss_pred             HHHHHHHHhCCCCCEEeeeCCCCC
Confidence            4443 2334667777777777664

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.91  E-value=1.3e-23  Score=220.59  Aligned_cols=226  Identities=23%  Similarity=0.229  Sum_probs=190.7

Q ss_pred             CEEEcCCCcccccCCCccccccCccEEeccCCccccCCchhhcCCCCcCeeccccccceeecchhHHhcCCCCCEEEccC
Q 048351          475 RILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRS  554 (850)
Q Consensus       475 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~  554 (850)
                      ...+..+..+. .+|..+.  ++|++|++++|++++..+..|.++++|++|++++|+++ .++...+..+++|++|++++
T Consensus        10 ~~~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~   85 (276)
T 2z62_A           10 ITYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTG   85 (276)
T ss_dssp             TEEECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTT
T ss_pred             ceEEecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCC-ccCHHHccCCcCCCEEECCC
Confidence            35667777776 5676553  68999999999999877779999999999999999998 55544344799999999999


Q ss_pred             CccccccCcCcCCCCCcceeecccccCcccCCccccCcccCccccccCccccccccccCCCcccCccceEeeEEEEEecC
Q 048351          555 NRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKG  634 (850)
Q Consensus       555 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  634 (850)
                      |.+++..+..+..+++|++|++++|++++..+..+.++++|                                       
T Consensus        86 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L---------------------------------------  126 (276)
T 2z62_A           86 NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL---------------------------------------  126 (276)
T ss_dssp             CCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTC---------------------------------------
T ss_pred             CccCccChhhhcCCccccEEECCCCCccccCchhcccCCCC---------------------------------------
Confidence            99998888999999999999999999987666566555554                                       


Q ss_pred             cccccccccccccEEEcCCCCCCCC-ChhhhhccccCCeEecCCCcCccCCCccccccCCCC----eeeCCCCcCcccCc
Q 048351          635 SEYEYKNTLGLVKSVDLSSNKLGGE-VPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLD----FLDLSRNQFSGGIP  709 (850)
Q Consensus       635 ~~~~~~~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~----~L~Ls~N~l~~~~p  709 (850)
                                  ++|++++|++++. +|..++.+++|+.|+|++|++++..+..+..+++|+    .|++++|++++..+
T Consensus       127 ------------~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~  194 (276)
T 2z62_A          127 ------------KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP  194 (276)
T ss_dssp             ------------CEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECT
T ss_pred             ------------CEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCc
Confidence                        8999999999874 699999999999999999999998888898888888    89999999998777


Q ss_pred             ccccCCCCCCEEEcCCCcCcccCCCC-CcCCCcCccccCCCCCCCCCC
Q 048351          710 SSLSQVNRLSVMDLSHNNLSGKIPTG-TQLQSFNASVYDGNPELCGLP  756 (850)
Q Consensus       710 ~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~lc~~~  756 (850)
                      ..+.. .+|++|++++|++++..|.. ..+..+....+.+||+.|+|+
T Consensus       195 ~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  241 (276)
T 2z62_A          195 GAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  241 (276)
T ss_dssp             TSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred             cccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence            66655 48999999999999654432 456667777899999999986

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.91  E-value=2.4e-23  Score=219.52  Aligned_cols=205  Identities=21%  Similarity=0.232  Sum_probs=168.1

Q ss_pred             cccCCCCCEEEcCCCcccccCCCccccccCccEEeccCCccccCCchhhcCCCCcCeeccccccceeecchhHHhcCCCC
Q 048351          468 WLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNL  547 (850)
Q Consensus       468 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L  547 (850)
                      +.++++++.+++++|.++ .+|..+.  ++++.|++++|++++..+..|..+++|++|++++|.++ .++..  ..+++|
T Consensus         6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~--~~l~~L   79 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD--GTLPVL   79 (290)
T ss_dssp             EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECC--SCCTTC
T ss_pred             ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-cccCC--CCCCcC
Confidence            556777778888887777 4555443  57888888888888777778888888888888888887 45543  268889


Q ss_pred             CEEEccCCccccccCcCcCCCCCcceeecccccCcccCCccccCcccCccccccCccccccccccCCCcccCccceEeeE
Q 048351          548 VVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDI  627 (850)
Q Consensus       548 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  627 (850)
                      ++|++++|+++ .+|..+..+++|++|++++|++++..|..|.++++|                                
T Consensus        80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L--------------------------------  126 (290)
T 1p9a_G           80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL--------------------------------  126 (290)
T ss_dssp             CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTC--------------------------------
T ss_pred             CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCC--------------------------------
Confidence            99999999987 677788889999999999999987766777666655                                


Q ss_pred             EEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCCCccccccCCCCeeeCCCCcCccc
Q 048351          628 VLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGG  707 (850)
Q Consensus       628 ~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~  707 (850)
                                         +.|+|++|++++..+..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|+++ .
T Consensus       127 -------------------~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~  186 (290)
T 1p9a_G          127 -------------------QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-T  186 (290)
T ss_dssp             -------------------CEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-C
T ss_pred             -------------------CEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-c
Confidence                               88999999999888888889999999999999999777777888999999999999998 6


Q ss_pred             CcccccCCCCCCEEEcCCCcCccc
Q 048351          708 IPSSLSQVNRLSVMDLSHNNLSGK  731 (850)
Q Consensus       708 ~p~~l~~l~~L~~L~ls~N~l~g~  731 (850)
                      +|..+..+.+|+++++++|++.+.
T Consensus       187 ip~~~~~~~~L~~l~L~~Np~~C~  210 (290)
T 1p9a_G          187 IPKGFFGSHLLPFAFLHGNPWLCN  210 (290)
T ss_dssp             CCTTTTTTCCCSEEECCSCCBCCS
T ss_pred             cChhhcccccCCeEEeCCCCccCc
Confidence            788888888999999999999764

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.90  E-value=6.8e-23  Score=214.25  Aligned_cols=205  Identities=23%  Similarity=0.294  Sum_probs=171.4

Q ss_pred             CccEEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCCCccccccCccEEeccCCccccCCchhhcCCCCcCeeccc
Q 048351          449 NLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALE  528 (850)
Q Consensus       449 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~  528 (850)
                      ..+.++++++.++ .+|..+.  ++++.|++++|++++..+..|..+++|++|++++|++++..+..|.++++|++|+++
T Consensus        17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~   93 (270)
T 2o6q_A           17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT   93 (270)
T ss_dssp             TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred             CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence            5678888888888 4565443  578889999998887766788888899999999998886666667888999999999


Q ss_pred             cccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccCcccCCccccCcccCccccccCcccccc
Q 048351          529 ENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITF  608 (850)
Q Consensus       529 ~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~  608 (850)
                      +|+++ .+|...+..+++|++|++++|.+++..+..|..+++|++|++++|++++..+..+..+++|             
T Consensus        94 ~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L-------------  159 (270)
T 2o6q_A           94 DNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSL-------------  159 (270)
T ss_dssp             SSCCC-CCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-------------
T ss_pred             CCcCC-cCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCccc-------------
Confidence            99988 5666555578999999999999998888888999999999999999986665556555554             


Q ss_pred             ccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCCCccc
Q 048351          609 SYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKI  688 (850)
Q Consensus       609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l  688 (850)
                                                            +.|+|++|++++..+..|..+++|+.|+|++|++++..+..|
T Consensus       160 --------------------------------------~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  201 (270)
T 2o6q_A          160 --------------------------------------KELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAF  201 (270)
T ss_dssp             --------------------------------------CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred             --------------------------------------ceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHh
Confidence                                                  889999999998888889999999999999999998777789


Q ss_pred             cccCCCCeeeCCCCcCcccC
Q 048351          689 GQLQSLDFLDLSRNQFSGGI  708 (850)
Q Consensus       689 ~~l~~L~~L~Ls~N~l~~~~  708 (850)
                      ..+++|+.|+|++|.+....
T Consensus       202 ~~l~~L~~L~l~~N~~~c~c  221 (270)
T 2o6q_A          202 DSLEKLKMLQLQENPWDCTC  221 (270)
T ss_dssp             TTCTTCCEEECCSSCBCCSS
T ss_pred             ccccCCCEEEecCCCeeCCC
Confidence            99999999999999987553

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.90  E-value=5.4e-24  Score=222.81  Aligned_cols=222  Identities=21%  Similarity=0.266  Sum_probs=176.2

Q ss_pred             CccEEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCCCccccccCccEEeccCCccccCCchhhcCCCCcCeeccc
Q 048351          449 NLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALE  528 (850)
Q Consensus       449 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~  528 (850)
                      ++..+++.++.+.+..  ....+++|+.|++++|.++. + ..+..+++|++|++++|++++ + ..+..+++|++|+++
T Consensus        20 ~l~~l~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~   93 (272)
T 3rfs_A           20 ETIKANLKKKSVTDAV--TQNELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILT   93 (272)
T ss_dssp             HHHHHHHTCSCTTSEE--CHHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECT
T ss_pred             HHHHHHhcCccccccc--ccccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECC
Confidence            4555666666665432  35667888888888888763 2 357778888888888888875 3 367788888888888


Q ss_pred             cccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccCcccCCccccCcccCccccccCcccccc
Q 048351          529 ENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITF  608 (850)
Q Consensus       529 ~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~  608 (850)
                      +|.++ .++...+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|             
T Consensus        94 ~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L-------------  159 (272)
T 3rfs_A           94 GNQLQ-SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNL-------------  159 (272)
T ss_dssp             TSCCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-------------
T ss_pred             CCccC-ccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccC-------------
Confidence            88888 4554443468889999999998887777778888999999999999887666666655555             


Q ss_pred             ccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCCCccc
Q 048351          609 SYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKI  688 (850)
Q Consensus       609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l  688 (850)
                                                            +.|++++|++++..+..++.+++|+.|++++|++++..|..+
T Consensus       160 --------------------------------------~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  201 (272)
T 3rfs_A          160 --------------------------------------TELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVF  201 (272)
T ss_dssp             --------------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred             --------------------------------------CEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHH
Confidence                                                  889999999998888888899999999999999998888888


Q ss_pred             cccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCCcCcccCCCC
Q 048351          689 GQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGKIPTG  735 (850)
Q Consensus       689 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~  735 (850)
                      +.+++|+.|++++|.+.+..       +.|++++++.|.++|.+|..
T Consensus       202 ~~l~~L~~L~l~~N~~~~~~-------~~l~~l~~~~n~~~g~ip~~  241 (272)
T 3rfs_A          202 DRLTSLQYIWLHDNPWDCTC-------PGIRYLSEWINKHSGVVRNS  241 (272)
T ss_dssp             TTCTTCCEEECCSSCBCCCT-------TTTHHHHHHHHHTGGGBBCT
T ss_pred             hCCcCCCEEEccCCCccccC-------cHHHHHHHHHHhCCCcccCc
Confidence            99999999999999988654       46888999999999999864

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.90  E-value=1.5e-23  Score=219.41  Aligned_cols=207  Identities=20%  Similarity=0.219  Sum_probs=178.3

Q ss_pred             CCCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCCCccccccCccEEeccCCccccCCchhhcCCCCcCeec
Q 048351          447 GQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVA  526 (850)
Q Consensus       447 ~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  526 (850)
                      +++|+.|++++|.++. ++ .+..+++|++|++++|.+++.  ..+..+++|++|++++|++++..+..+..+++|++|+
T Consensus        40 l~~L~~L~l~~~~i~~-~~-~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  115 (272)
T 3rfs_A           40 LNSIDQIIANNSDIKS-VQ-GIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV  115 (272)
T ss_dssp             HTTCCEEECTTSCCCC-CT-TGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred             ccceeeeeeCCCCccc-cc-ccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence            3789999999998873 33 588899999999999999863  4788899999999999999988888889999999999


Q ss_pred             cccccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccCcccCCccccCcccCccccccCcccc
Q 048351          527 LEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAI  606 (850)
Q Consensus       527 L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~  606 (850)
                      +++|+++ .+|...+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|           
T Consensus       116 L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-----------  183 (272)
T 3rfs_A          116 LVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQL-----------  183 (272)
T ss_dssp             CTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-----------
T ss_pred             CCCCcCC-ccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccC-----------
Confidence            9999998 5555544479999999999999998888788999999999999999997777666666555           


Q ss_pred             ccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCCCc
Q 048351          607 TFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITP  686 (850)
Q Consensus       607 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~  686 (850)
                                                              +.|++++|++++..|..++.+++|+.|+|++|.+.+.   
T Consensus       184 ----------------------------------------~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~---  220 (272)
T 3rfs_A          184 ----------------------------------------KDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT---  220 (272)
T ss_dssp             ----------------------------------------CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC---
T ss_pred             ----------------------------------------CEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc---
Confidence                                                    8999999999998888899999999999999999865   


Q ss_pred             cccccCCCCeeeCCCCcCcccCcccccCCC
Q 048351          687 KIGQLQSLDFLDLSRNQFSGGIPSSLSQVN  716 (850)
Q Consensus       687 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  716 (850)
                          +++|+.|+++.|+++|.+|..++.+.
T Consensus       221 ----~~~l~~l~~~~n~~~g~ip~~~~~~~  246 (272)
T 3rfs_A          221 ----CPGIRYLSEWINKHSGVVRNSAGSVA  246 (272)
T ss_dssp             ----TTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred             ----CcHHHHHHHHHHhCCCcccCcccccC
Confidence                45799999999999999999887654

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.90  E-value=7.5e-23  Score=215.76  Aligned_cols=207  Identities=23%  Similarity=0.251  Sum_probs=176.9

Q ss_pred             cccccCccEEeccCCccccCCchhhcCCCCcCeeccccccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCc
Q 048351          492 CGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADI  571 (850)
Q Consensus       492 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L  571 (850)
                      ++.+++++++++++|+++ .+|..+.  ++++.|++++|++++..|..+. .+++|++|++++|.+++..+.  ..+++|
T Consensus         6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~--~~l~~L   79 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLM-PYTRLTQLNLDRAELTKLQVD--GTLPVL   79 (290)
T ss_dssp             EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGT-TCTTCCEEECTTSCCCEEECC--SCCTTC
T ss_pred             ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhh-cCCCCCEEECCCCccCcccCC--CCCCcC
Confidence            567889999999999998 5665553  6899999999999955555555 799999999999999976543  789999


Q ss_pred             ceeecccccCcccCCccccCcccCccccccCccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEc
Q 048351          572 QILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDL  651 (850)
Q Consensus       572 ~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L  651 (850)
                      ++|++++|+++ .+|..+..+++|                                                   +.|+|
T Consensus        80 ~~L~Ls~N~l~-~l~~~~~~l~~L---------------------------------------------------~~L~l  107 (290)
T 1p9a_G           80 GTLDLSHNQLQ-SLPLLGQTLPAL---------------------------------------------------TVLDV  107 (290)
T ss_dssp             CEEECCSSCCS-SCCCCTTTCTTC---------------------------------------------------CEEEC
T ss_pred             CEEECCCCcCC-cCchhhccCCCC---------------------------------------------------CEEEC
Confidence            99999999998 566655555444                                                   89999


Q ss_pred             CCCCCCCCChhhhhccccCCeEecCCCcCccCCCccccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCCcCccc
Q 048351          652 SSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGK  731 (850)
Q Consensus       652 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~  731 (850)
                      ++|++++..|..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|++++..+..|..+++|++|++++|+++ .
T Consensus       108 ~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~  186 (290)
T 1p9a_G          108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-T  186 (290)
T ss_dssp             CSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-C
T ss_pred             CCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-c
Confidence            999999888899999999999999999999888888999999999999999999887778899999999999999999 6


Q ss_pred             CCCC-CcCCCcCccccCCCCCCCCCCC
Q 048351          732 IPTG-TQLQSFNASVYDGNPELCGLPL  757 (850)
Q Consensus       732 iP~~-~~~~~~~~~~~~gN~~lc~~~~  757 (850)
                      +|.. .....+....+.|||+.|+|..
T Consensus       187 ip~~~~~~~~L~~l~L~~Np~~C~c~~  213 (290)
T 1p9a_G          187 IPKGFFGSHLLPFAFLHGNPWLCNCEI  213 (290)
T ss_dssp             CCTTTTTTCCCSEEECCSCCBCCSGGG
T ss_pred             cChhhcccccCCeEEeCCCCccCcCcc
Confidence            6654 3344566667899999998753

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.89  E-value=3.8e-24  Score=233.97  Aligned_cols=257  Identities=21%  Similarity=0.208  Sum_probs=187.4

Q ss_pred             EEEccCCcCcCccccccccCCCCccEEEccCCCCCCCCC----cccccCC-CCCEEEcCCCcccccCCCccccc-----c
Q 048351          427 YIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLP----DCWLQFN-MLRILNLANNNFSGKIPNSCGYL-----Q  496 (850)
Q Consensus       427 ~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p----~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l-----~  496 (850)
                      +++++.|.+++.++.... ..++|++|++++|.+++..+    ..+..++ +|++|++++|.+++..+..+..+     +
T Consensus         2 ~~~ls~n~~~~~~~~~~~-~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~   80 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTS-IPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA   80 (362)
T ss_dssp             EEECCCCTTCCHHHHHHT-SCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred             ccccccccchHHHHHHHh-CCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence            356677777776665433 23558999999999886666    6777888 89999999999987767666665     8


Q ss_pred             CccEEeccCCccccCCchhh----cCC-CCcCeeccccccceeecchhHHh---c-CCCCCEEEccCCcccccc----Cc
Q 048351          497 KMLTLSLHHNNFSGELPSLL----KNF-THLRVVALEENSISGNIPAWIGE---S-LLNLVVLDLRSNRFYGKI----PF  563 (850)
Q Consensus       497 ~L~~L~Ls~N~l~~~~p~~l----~~l-~~L~~L~L~~N~l~~~ip~~~~~---~-l~~L~~L~L~~N~l~~~~----p~  563 (850)
                      +|++|++++|++++..+..+    ..+ ++|++|++++|++++..+..+..   . .++|++|++++|.+++..    +.
T Consensus        81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~  160 (362)
T 3goz_A           81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ  160 (362)
T ss_dssp             TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred             CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH
Confidence            89999999999987666643    444 88999999999998554444432   2 358999999999988543    33


Q ss_pred             CcCCCC-CcceeecccccCcccCCccccCcccCccccccCccccccccccCCCcccCccceEeeEEEEEecCcccccccc
Q 048351          564 QLCHLA-DIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNT  642 (850)
Q Consensus       564 ~l~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  642 (850)
                      .+..++ +|++|+|++|++++..+..+...                                               ...
T Consensus       161 ~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~-----------------------------------------------l~~  193 (362)
T 3goz_A          161 ILAAIPANVNSLNLRGNNLASKNCAELAKF-----------------------------------------------LAS  193 (362)
T ss_dssp             HHHTSCTTCCEEECTTSCGGGSCHHHHHHH-----------------------------------------------HHT
T ss_pred             HHhcCCccccEeeecCCCCchhhHHHHHHH-----------------------------------------------HHh
Confidence            344554 89999999999986655433211                                               011


Q ss_pred             c-ccccEEEcCCCCCCCC----Chhhhhcc-ccCCeEecCCCcCccCCC----ccccccCCCCeeeCCCCcCcccCc---
Q 048351          643 L-GLVKSVDLSSNKLGGE----VPEEIMDL-VGLIGLNLSRNNLTGYIT----PKIGQLQSLDFLDLSRNQFSGGIP---  709 (850)
Q Consensus       643 l-~~L~~L~Ls~N~l~~~----~p~~l~~l-~~L~~L~Ls~N~l~~~ip----~~l~~l~~L~~L~Ls~N~l~~~~p---  709 (850)
                      . +.|+.|||++|++++.    ++..+..+ ++|+.|+|++|.+++..+    ..+..+++|+.|+|++|.+.+..+   
T Consensus       194 ~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~  273 (362)
T 3goz_A          194 IPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQC  273 (362)
T ss_dssp             SCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHH
T ss_pred             CCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHH
Confidence            2 2458999999999864    45556553 589999999999987655    334667899999999999654433   


Q ss_pred             ----ccccCCCCCCEEEcCCCcCccc
Q 048351          710 ----SSLSQVNRLSVMDLSHNNLSGK  731 (850)
Q Consensus       710 ----~~l~~l~~L~~L~ls~N~l~g~  731 (850)
                          ..+..+++|++||+++|++.+.
T Consensus       274 ~~l~~~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          274 KALGAAFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             HHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred             HHHHHHhccCCceEEEecCCCcCCCc
Confidence                3677888899999999998765

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.88  E-value=4.2e-23  Score=220.50  Aligned_cols=228  Identities=19%  Similarity=0.192  Sum_probs=145.2

Q ss_pred             CccEEEccCCCCCCCC-Cc--ccccCCCCCEEEcCCCcccccCCCcc--ccccCccEEeccCCccccCCc----hhhcCC
Q 048351          449 NLVYLDLSSNLLSGKL-PD--CWLQFNMLRILNLANNNFSGKIPNSC--GYLQKMLTLSLHHNNFSGELP----SLLKNF  519 (850)
Q Consensus       449 ~L~~L~Ls~n~l~~~~-p~--~~~~l~~L~~L~Ls~N~l~~~~p~~~--~~l~~L~~L~Ls~N~l~~~~p----~~l~~l  519 (850)
                      .++.+.+.++.+.... ..  .+..+++|++|++++|.+++..|..+  ..+++|++|++++|++++..+    ..+..+
T Consensus        65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~  144 (310)
T 4glp_A           65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK  144 (310)
T ss_dssp             CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred             ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence            4556666665553210 00  12234557777777777776666666  667777777777777765444    334456


Q ss_pred             CCcCeeccccccceeecchhHHhcCCCCCEEEccCCccccc--c--CcCcCCCCCcceeecccccCcccCCccccCcccC
Q 048351          520 THLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGK--I--PFQLCHLADIQILDLSLNNISGNIPKCFNNFTAM  595 (850)
Q Consensus       520 ~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~--~--p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L  595 (850)
                      ++|++|++++|++++..|..+. .+++|++|++++|++.+.  +  +..+..+++|++|++++|+++.. +...      
T Consensus       145 ~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~------  216 (310)
T 4glp_A          145 PGLKVLSIAQAHSPAFSCEQVR-AFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETP-TGVC------  216 (310)
T ss_dssp             SCCCEEEEECCSSCCCCTTSCC-CCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCH-HHHH------
T ss_pred             cCCCEEEeeCCCcchhhHHHhc-cCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCch-HHHH------
Confidence            7777777777777643334443 577777777777776542  1  22335677788888888877521 1100      


Q ss_pred             ccccccCccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhcc---ccCCe
Q 048351          596 TQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDL---VGLIG  672 (850)
Q Consensus       596 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l---~~L~~  672 (850)
                                                               ......++.|++|||++|++++..|..++.+   ++|+.
T Consensus       217 -----------------------------------------~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~  255 (310)
T 4glp_A          217 -----------------------------------------AALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNS  255 (310)
T ss_dssp             -----------------------------------------HHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCC
T ss_pred             -----------------------------------------HHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCE
Confidence                                                     0001223445778888888887777777666   58888


Q ss_pred             EecCCCcCccCCCccccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCCcCcc
Q 048351          673 LNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSG  730 (850)
Q Consensus       673 L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g  730 (850)
                      |+|++|+++ .+|..+.  ++|++|||++|++++. |. +..+++|++|++++|+++.
T Consensus       256 L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          256 LNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             EECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred             EECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence            888888888 5666664  7888888888888864 33 6777888888888888863

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.88  E-value=3e-22  Score=206.83  Aligned_cols=211  Identities=19%  Similarity=0.205  Sum_probs=138.3

Q ss_pred             ccEEeccCCccccCCchhhcCCCCcCeeccccccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecc
Q 048351          498 MLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLS  577 (850)
Q Consensus       498 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls  577 (850)
                      .++++++++.++ .+|..+.  +.++.|++++|++++..+..+. ++++|++|++++|.+++..+..+..+++|++|+++
T Consensus        16 ~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   91 (251)
T 3m19_A           16 KKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFR-GLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA   91 (251)
T ss_dssp             GTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTT-TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             CeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhc-CcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence            444555555554 3333332  3555555555555533333333 46666666666666666666667777777777777


Q ss_pred             cccCcccCCccccCcccCccccccCccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCC
Q 048351          578 LNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLG  657 (850)
Q Consensus       578 ~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~  657 (850)
                      +|++++..+..|..+++|                                                   ++|+|++|+++
T Consensus        92 ~n~l~~~~~~~~~~l~~L---------------------------------------------------~~L~L~~N~l~  120 (251)
T 3m19_A           92 NNQLASLPLGVFDHLTQL---------------------------------------------------DKLYLGGNQLK  120 (251)
T ss_dssp             TSCCCCCCTTTTTTCTTC---------------------------------------------------CEEECCSSCCC
T ss_pred             CCcccccChhHhcccCCC---------------------------------------------------CEEEcCCCcCC
Confidence            777776555555555444                                                   77888888888


Q ss_pred             CCChhhhhccccCCeEecCCCcCccCCCccccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCCcCcccCCCCCc
Q 048351          658 GEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGKIPTGTQ  737 (850)
Q Consensus       658 ~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~~  737 (850)
                      +..+..|..+++|+.|+|++|++++..+..|+.+++|++|+|++|++++..+..+..+++|++|++++|++++..+....
T Consensus       121 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~  200 (251)
T 3m19_A          121 SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCEILY  200 (251)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTSTTHHH
T ss_pred             CcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCccccHH
Confidence            77777788888999999999999987777888999999999999999988888899999999999999999876433211


Q ss_pred             CCCc------CccccCCCCCCCCCCCCCCCCCC
Q 048351          738 LQSF------NASVYDGNPELCGLPLPSKCWDE  764 (850)
Q Consensus       738 ~~~~------~~~~~~gN~~lc~~~~~~~c~~~  764 (850)
                      +..+      ......|+ .+|+.+....|..+
T Consensus       201 l~~~~~~~~~~~~~~~~~-~~~~~~~~~~C~~~  232 (251)
T 3m19_A          201 LSQWIRENSNKVKDGTGQ-NLHESPDGVTCSDG  232 (251)
T ss_dssp             HHHHHHHSGGGBCC--------CCGGGCBBTTS
T ss_pred             HHHHHHhcccceeeccCc-ccccCCCcCccCCC
Confidence            1111      11112344 35666666677654

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.88  E-value=5.2e-24  Score=235.23  Aligned_cols=236  Identities=18%  Similarity=0.194  Sum_probs=179.6

Q ss_pred             CCCccEEEccCCCCCCCCC----cccccCCCCCEEEcCCC---cccccCCCcc-------ccccCccEEeccCCcccc--
Q 048351          447 GQNLVYLDLSSNLLSGKLP----DCWLQFNMLRILNLANN---NFSGKIPNSC-------GYLQKMLTLSLHHNNFSG--  510 (850)
Q Consensus       447 ~~~L~~L~Ls~n~l~~~~p----~~~~~l~~L~~L~Ls~N---~l~~~~p~~~-------~~l~~L~~L~Ls~N~l~~--  510 (850)
                      +++|++|+|++|.+.+..+    ..+..+++|++|+|++|   ++++.+|..+       ..+++|++|+|++|++++  
T Consensus        31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~  110 (386)
T 2ca6_A           31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA  110 (386)
T ss_dssp             CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred             CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence            3678888888888775433    34667888888888885   4455555544       577888899999988886  


Q ss_pred             --CCchhhcCCCCcCeeccccccceeecchhHHh---cC---------CCCCEEEccCCccc-cccC---cCcCCCCCcc
Q 048351          511 --ELPSLLKNFTHLRVVALEENSISGNIPAWIGE---SL---------LNLVVLDLRSNRFY-GKIP---FQLCHLADIQ  572 (850)
Q Consensus       511 --~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~---~l---------~~L~~L~L~~N~l~-~~~p---~~l~~l~~L~  572 (850)
                        .+|..+..+++|++|+|++|.+++..+..+..   .+         ++|++|++++|+++ +.+|   ..+..+++|+
T Consensus       111 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~  190 (386)
T 2ca6_A          111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH  190 (386)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred             HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcC
Confidence              46778888889999999999886443433332   23         78999999999987 3444   3566788999


Q ss_pred             eeecccccCcc-----cCCccccCcccCccccccCccccccccccCCCcccCccceEeeEEEEEecCccccccccccccc
Q 048351          573 ILDLSLNNISG-----NIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVK  647 (850)
Q Consensus       573 ~L~Ls~N~l~~-----~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~  647 (850)
                      +|++++|+++.     ..|..+.                                                   .++.|+
T Consensus       191 ~L~L~~n~l~~~g~~~l~~~~l~---------------------------------------------------~~~~L~  219 (386)
T 2ca6_A          191 TVKMVQNGIRPEGIEHLLLEGLA---------------------------------------------------YCQELK  219 (386)
T ss_dssp             EEECCSSCCCHHHHHHHHHTTGG---------------------------------------------------GCTTCC
T ss_pred             EEECcCCCCCHhHHHHHHHHHhh---------------------------------------------------cCCCcc
Confidence            99999998872     1222333                                                   334458


Q ss_pred             EEEcCCCCCC----CCChhhhhccccCCeEecCCCcCccC----CCcccc--ccCCCCeeeCCCCcCcc----cCcccc-
Q 048351          648 SVDLSSNKLG----GEVPEEIMDLVGLIGLNLSRNNLTGY----ITPKIG--QLQSLDFLDLSRNQFSG----GIPSSL-  712 (850)
Q Consensus       648 ~L~Ls~N~l~----~~~p~~l~~l~~L~~L~Ls~N~l~~~----ip~~l~--~l~~L~~L~Ls~N~l~~----~~p~~l-  712 (850)
                      .|+|++|+++    +.+|..+..+++|+.|+|++|.+++.    +|..+.  .+++|+.|+|++|.+++    .+|..+ 
T Consensus       220 ~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~  299 (386)
T 2ca6_A          220 VLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVID  299 (386)
T ss_dssp             EEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHH
T ss_pred             EEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHH
Confidence            9999999996    67888899999999999999999876    566663  48999999999999998    488877 


Q ss_pred             cCCCCCCEEEcCCCcCcccCC
Q 048351          713 SQVNRLSVMDLSHNNLSGKIP  733 (850)
Q Consensus       713 ~~l~~L~~L~ls~N~l~g~iP  733 (850)
                      .++++|++|++++|++++..|
T Consensus       300 ~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          300 EKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             HHCTTCCEEECTTSBSCTTSH
T ss_pred             hcCCCceEEEccCCcCCcchh
Confidence            668999999999999997654

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.87  E-value=4.2e-22  Score=204.19  Aligned_cols=196  Identities=14%  Similarity=0.154  Sum_probs=107.9

Q ss_pred             CCCEEEcCCCcccccCCCccccccCccEEeccCCc-cccCCchhhcCCCCcCeecccc-ccceeecchhHHhcCCCCCEE
Q 048351          473 MLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNN-FSGELPSLLKNFTHLRVVALEE-NSISGNIPAWIGESLLNLVVL  550 (850)
Q Consensus       473 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~L~~-N~l~~~ip~~~~~~l~~L~~L  550 (850)
                      +|++|++++|++++..+..|.++++|++|++++|+ +++..+..|.++++|++|++++ |+++ .+|...+.++++|++|
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~-~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT-YIDPDALKELPLLKFL  110 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC-EECTTSEECCTTCCEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee-EcCHHHhCCCCCCCEE
Confidence            55556666665555444455555556666666554 5544444555555566666655 5555 3443333345556666


Q ss_pred             EccCCccccccCcCcCCCCCcc---eeecccc-cCcccCCccccCcccCccccccCccccccccccCCCcccCccceEee
Q 048351          551 DLRSNRFYGKIPFQLCHLADIQ---ILDLSLN-NISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFD  626 (850)
Q Consensus       551 ~L~~N~l~~~~p~~l~~l~~L~---~L~Ls~N-~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  626 (850)
                      ++++|.+++ +|. +..+++|+   +|++++| ++++..+..|.++++|                               
T Consensus       111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L-------------------------------  157 (239)
T 2xwt_C          111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNE-------------------------------  157 (239)
T ss_dssp             EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSS-------------------------------
T ss_pred             eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcc-------------------------------
Confidence            666665554 343 55555555   6666666 5554444444444333                               


Q ss_pred             EEEEEecCccccccccccccc-EEEcCCCCCCCCChhhhhccccCCeEecCCCc-CccCCCcccccc-CCCCeeeCCCCc
Q 048351          627 IVLLTWKGSEYEYKNTLGLVK-SVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNN-LTGYITPKIGQL-QSLDFLDLSRNQ  703 (850)
Q Consensus       627 ~~~~~~~~~~~~~~~~l~~L~-~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~ip~~l~~l-~~L~~L~Ls~N~  703 (850)
                                          + .|++++|+++ .+|......++|+.|+|++|+ +++..+..|..+ ++|+.||+++|+
T Consensus       158 --------------------~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~  216 (239)
T 2xwt_C          158 --------------------TLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTS  216 (239)
T ss_dssp             --------------------EEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCC
T ss_pred             --------------------eeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCc
Confidence                                5 5666666665 333332222566666666663 665555566666 666666666666


Q ss_pred             CcccCcccccCCCCCCEEEcCCC
Q 048351          704 FSGGIPSSLSQVNRLSVMDLSHN  726 (850)
Q Consensus       704 l~~~~p~~l~~l~~L~~L~ls~N  726 (850)
                      +++..+.   .+++|+.|+++++
T Consensus       217 l~~l~~~---~~~~L~~L~l~~~  236 (239)
T 2xwt_C          217 VTALPSK---GLEHLKELIARNT  236 (239)
T ss_dssp             CCCCCCT---TCTTCSEEECTTC
T ss_pred             cccCChh---HhccCceeeccCc
Confidence            6643332   4456666666654

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.87  E-value=1.2e-22  Score=222.09  Aligned_cols=237  Identities=16%  Similarity=0.152  Sum_probs=124.7

Q ss_pred             EEccCCcCCcccchhhhcCCCCcEEEccCCccccccccccccccccccCCCCCChhccCCC-CCCEEEccCCcCCCCCch
Q 048351          291 LTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQK-HFSVLDISSAGISDSIPD  369 (850)
Q Consensus       291 L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~~~l~~~~p~~l~~l~-~L~~L~Ls~n~l~~~~~~  369 (850)
                      ++++.|.+++.+|..+...++|++|+|++|.+++..+..             +...+..++ +|++|++++|.+++..+.
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~-------------l~~~l~~~~~~L~~L~Ls~N~l~~~~~~   69 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVE-------------LIQAFANTPASVTSLNLSGNSLGFKNSD   69 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHH-------------HHHHHHTCCTTCCEEECCSSCGGGSCHH
T ss_pred             cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHH-------------HHHHHHhCCCceeEEECcCCCCCHHHHH
Confidence            445555555555555555555666666666555433211             001244444 555555555555555444


Q ss_pred             hHhhc----CcCCCEEecccCcCcccCChhhhhhccCCcCEEEccCCcCcccCCCCCCCCcEEEccCCcCcCcccccccc
Q 048351          370 WFSDT----SHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSLPSNAFYIDLSKNKFSGPISFLCSF  445 (850)
Q Consensus       370 ~~~~~----~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~  445 (850)
                      .+...    .++|++|++++|.+++..+..+.... .                                           
T Consensus        70 ~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l-~-------------------------------------------  105 (362)
T 3goz_A           70 ELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTL-A-------------------------------------------  105 (362)
T ss_dssp             HHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHH-H-------------------------------------------
T ss_pred             HHHHHHhccCCCccEEECcCCcCChHHHHHHHHHH-H-------------------------------------------
Confidence            44432    24566666666666655444331111 0                                           


Q ss_pred             CC-CCccEEEccCCCCCCCCCcccc----c-CCCCCEEEcCCCcccccCC----Ccccccc-CccEEeccCCccccCCch
Q 048351          446 SG-QNLVYLDLSSNLLSGKLPDCWL----Q-FNMLRILNLANNNFSGKIP----NSCGYLQ-KMLTLSLHHNNFSGELPS  514 (850)
Q Consensus       446 ~~-~~L~~L~Ls~n~l~~~~p~~~~----~-l~~L~~L~Ls~N~l~~~~p----~~~~~l~-~L~~L~Ls~N~l~~~~p~  514 (850)
                      .+ ++|++|++++|.+++..+..+.    . .++|++|++++|.+++..+    ..+..++ +|++|++++|++++..+.
T Consensus       106 ~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~  185 (362)
T 3goz_A          106 AIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCA  185 (362)
T ss_dssp             TSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHH
T ss_pred             hCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHH
Confidence            01 3455555555555443333322    2 2456666666666653222    2223333 666666666666655443


Q ss_pred             h----hcCC-CCcCeecccccccee----ecchhHHhcCCCCCEEEccCCccccccC----cCcCCCCCcceeecccccC
Q 048351          515 L----LKNF-THLRVVALEENSISG----NIPAWIGESLLNLVVLDLRSNRFYGKIP----FQLCHLADIQILDLSLNNI  581 (850)
Q Consensus       515 ~----l~~l-~~L~~L~L~~N~l~~----~ip~~~~~~l~~L~~L~L~~N~l~~~~p----~~l~~l~~L~~L~Ls~N~l  581 (850)
                      .    +..+ ++|++|+|++|.+++    .++..+....++|++|++++|.+++..+    ..+..+++|++|++++|.+
T Consensus       186 ~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l  265 (362)
T 3goz_A          186 ELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIV  265 (362)
T ss_dssp             HHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHH
T ss_pred             HHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCc
Confidence            3    3333 467777777777763    1455554324577778887777765433    2345667788888888876


Q ss_pred             ccc
Q 048351          582 SGN  584 (850)
Q Consensus       582 ~~~  584 (850)
                      .+.
T Consensus       266 ~~i  268 (362)
T 3goz_A          266 KNM  268 (362)
T ss_dssp             TTC
T ss_pred             ccc
Confidence            543

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.87  E-value=1.2e-22  Score=216.91  Aligned_cols=206  Identities=21%  Similarity=0.165  Sum_probs=129.3

Q ss_pred             CCccEEEccCCCCCCCCCccc--ccCCCCCEEEcCCCcccccCC----CccccccCccEEeccCCccccCCchhhcCCCC
Q 048351          448 QNLVYLDLSSNLLSGKLPDCW--LQFNMLRILNLANNNFSGKIP----NSCGYLQKMLTLSLHHNNFSGELPSLLKNFTH  521 (850)
Q Consensus       448 ~~L~~L~Ls~n~l~~~~p~~~--~~l~~L~~L~Ls~N~l~~~~p----~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~  521 (850)
                      ++|++|++++|.+.+..|..+  ..+++|++|++++|.+++..+    ..+..+++|++|++++|++.+..+..+..+++
T Consensus        91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~  170 (310)
T 4glp_A           91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA  170 (310)
T ss_dssp             SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred             CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence            446666666666666666655  666666666666666665433    22334666667777777666666666666666


Q ss_pred             cCeeccccccceee--cch-hHHhcCCCCCEEEccCCcccccc--Cc-CcCCCCCcceeecccccCcccCCccccCcccC
Q 048351          522 LRVVALEENSISGN--IPA-WIGESLLNLVVLDLRSNRFYGKI--PF-QLCHLADIQILDLSLNNISGNIPKCFNNFTAM  595 (850)
Q Consensus       522 L~~L~L~~N~l~~~--ip~-~~~~~l~~L~~L~L~~N~l~~~~--p~-~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L  595 (850)
                      |++|++++|++.+.  ++. .....+++|++|++++|+++...  +. .+..+++|++|||++|++++..|..+..+..+
T Consensus       171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~  250 (310)
T 4glp_A          171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWS  250 (310)
T ss_dssp             CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCC
T ss_pred             CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCc
Confidence            77777777665532  221 11124666777777777665211  11 23556777777777777776666655444211


Q ss_pred             ccccccCccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEec
Q 048351          596 TQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNL  675 (850)
Q Consensus       596 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L  675 (850)
                                                                      +.|++|+|++|+++ .+|..+.  ++|+.|+|
T Consensus       251 ------------------------------------------------~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~L  279 (310)
T 4glp_A          251 ------------------------------------------------SALNSLNLSFAGLE-QVPKGLP--AKLRVLDL  279 (310)
T ss_dssp             ------------------------------------------------TTCCCEECCSSCCC-SCCSCCC--SCCSCEEC
T ss_pred             ------------------------------------------------CcCCEEECCCCCCC-chhhhhc--CCCCEEEC
Confidence                                                            22367778888877 5566554  68888888


Q ss_pred             CCCcCccCCCccccccCCCCeeeCCCCcCcc
Q 048351          676 SRNNLTGYITPKIGQLQSLDFLDLSRNQFSG  706 (850)
Q Consensus       676 s~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~  706 (850)
                      ++|++++. |. +..+++|+.|+|++|+++.
T Consensus       280 s~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          280 SSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             CSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred             CCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence            88888864 33 6777888888888888874

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.86  E-value=5.2e-23  Score=222.81  Aligned_cols=252  Identities=17%  Similarity=0.207  Sum_probs=184.7

Q ss_pred             CcEEEccCCcCcCccccccccCCCCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCccccc-CCCccccccCccEEec
Q 048351          425 AFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGK-IPNSCGYLQKMLTLSL  503 (850)
Q Consensus       425 L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~L  503 (850)
                      ++.++++++.+....  ......++++.|++++|.+.+..+. +..+++|++|++++|.+++. +|..+..+++|++|++
T Consensus        49 ~~~l~l~~~~~~~~~--~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L  125 (336)
T 2ast_B           49 WQTLDLTGKNLHPDV--TGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL  125 (336)
T ss_dssp             SSEEECTTCBCCHHH--HHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEEC
T ss_pred             heeeccccccCCHHH--HHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeC
Confidence            445666665554211  1100115788899999988876665 55788999999999988765 7777888899999999


Q ss_pred             cCCccccCCchhhcCCCCcCeeccccc-cceee-cchhHHhcCCCCCEEEccCC-ccccc-cCcCcCCCC-Ccceeeccc
Q 048351          504 HHNNFSGELPSLLKNFTHLRVVALEEN-SISGN-IPAWIGESLLNLVVLDLRSN-RFYGK-IPFQLCHLA-DIQILDLSL  578 (850)
Q Consensus       504 s~N~l~~~~p~~l~~l~~L~~L~L~~N-~l~~~-ip~~~~~~l~~L~~L~L~~N-~l~~~-~p~~l~~l~-~L~~L~Ls~  578 (850)
                      ++|.+++..+..+..+++|++|++++| .+++. ++..+. .+++|++|++++| .+++. ++..+..++ +|++|++++
T Consensus       126 ~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~-~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~  204 (336)
T 2ast_B          126 EGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLS-SCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG  204 (336)
T ss_dssp             TTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHH-HCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCS
T ss_pred             cCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHh-cCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCC
Confidence            999988888888888999999999998 67653 555554 6899999999999 88764 566677888 999999999


Q ss_pred             cc--Cc-ccCCccccCcccCccccccCccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCC
Q 048351          579 NN--IS-GNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNK  655 (850)
Q Consensus       579 N~--l~-~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~  655 (850)
                      |.  ++ +.+|..+.+                                                   +++|+.|++++|.
T Consensus       205 ~~~~~~~~~l~~~~~~---------------------------------------------------~~~L~~L~l~~~~  233 (336)
T 2ast_B          205 YRKNLQKSDLSTLVRR---------------------------------------------------CPNLVHLDLSDSV  233 (336)
T ss_dssp             CGGGSCHHHHHHHHHH---------------------------------------------------CTTCSEEECTTCT
T ss_pred             CcccCCHHHHHHHHhh---------------------------------------------------CCCCCEEeCCCCC
Confidence            84  44 233333333                                                   3445899999998


Q ss_pred             -CCCCChhhhhccccCCeEecCCCc-CccCCCccccccCCCCeeeCCCCcCcccCcccccCC-CCCCEEEcCCCcCcccC
Q 048351          656 -LGGEVPEEIMDLVGLIGLNLSRNN-LTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQV-NRLSVMDLSHNNLSGKI  732 (850)
Q Consensus       656 -l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~ls~N~l~g~i  732 (850)
                       +++..+..+..+++|+.|++++|. ++......++++++|+.|++++| ++..   .+..+ ..+..|++++|+++|..
T Consensus       234 ~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~---~~~~l~~~l~~L~l~~n~l~~~~  309 (336)
T 2ast_B          234 MLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDG---TLQLLKEALPHLQINCSHFTTIA  309 (336)
T ss_dssp             TCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTT---CHHHHHHHSTTSEESCCCSCCTT
T ss_pred             cCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHH---HHHHHHhhCcceEEecccCcccc
Confidence             777888889999999999999995 33222236788999999999998 4432   33333 24677778999999887


Q ss_pred             CCC
Q 048351          733 PTG  735 (850)
Q Consensus       733 P~~  735 (850)
                      |..
T Consensus       310 ~~~  312 (336)
T 2ast_B          310 RPT  312 (336)
T ss_dssp             CSS
T ss_pred             CCc
Confidence            753

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.86  E-value=1.6e-21  Score=207.77  Aligned_cols=193  Identities=23%  Similarity=0.398  Sum_probs=112.3

Q ss_pred             cCCCCCEEEcCCCcccccCCCccccccCccEEeccCCccccCCchhhcCCCCcCeeccccccceeecchhHHhcCCCCCE
Q 048351          470 QFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVV  549 (850)
Q Consensus       470 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~  549 (850)
                      .+++|+.|++++|.++. +| .+..+++|++|++++|++++..+  +..+++|++|++++|+++ .++ .+. .+++|++
T Consensus        39 ~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~-~~~-~~~-~l~~L~~  111 (308)
T 1h6u_A           39 DLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK-NVS-AIA-GLQSIKT  111 (308)
T ss_dssp             HHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS-CCG-GGT-TCTTCCE
T ss_pred             HcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCC-Cch-hhc-CCCCCCE
Confidence            34455555555555542 22 34455555555555555553222  555555555555555555 333 232 4566666


Q ss_pred             EEccCCccccccCcCcCCCCCcceeecccccCcccCCccccCcccCccccccCccccccccccCCCcccCccceEeeEEE
Q 048351          550 LDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVL  629 (850)
Q Consensus       550 L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  629 (850)
                      |++++|.+++. + .+..+++|++|++++|++++..+  +..+                                     
T Consensus       112 L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l-------------------------------------  150 (308)
T 1h6u_A          112 LDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGL-------------------------------------  150 (308)
T ss_dssp             EECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGC-------------------------------------
T ss_pred             EECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCC-------------------------------------
Confidence            66666666543 2 25666666666666666654322  2222                                     


Q ss_pred             EEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCCCccccccCCCCeeeCCCCcCcccCc
Q 048351          630 LTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIP  709 (850)
Q Consensus       630 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p  709 (850)
                                    +.|+.|+|++|++++..+  +..+++|+.|++++|++++..+  +..+++|++|+|++|++++..|
T Consensus       151 --------------~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~  212 (308)
T 1h6u_A          151 --------------TNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP  212 (308)
T ss_dssp             --------------TTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG
T ss_pred             --------------CCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc
Confidence                          223667777777764333  6677777777777777775432  6777777777777777775543


Q ss_pred             ccccCCCCCCEEEcCCCcCcc
Q 048351          710 SSLSQVNRLSVMDLSHNNLSG  730 (850)
Q Consensus       710 ~~l~~l~~L~~L~ls~N~l~g  730 (850)
                        +..+++|++|++++|++++
T Consensus       213 --l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          213 --LANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             --GTTCTTCCEEEEEEEEEEC
T ss_pred             --ccCCCCCCEEEccCCeeec
Confidence              6777777777777777764

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.86  E-value=2.1e-21  Score=206.76  Aligned_cols=193  Identities=20%  Similarity=0.318  Sum_probs=157.3

Q ss_pred             CCCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCCCccccccCccEEeccCCccccCCchhhcCCCCcCeec
Q 048351          447 GQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVA  526 (850)
Q Consensus       447 ~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  526 (850)
                      +++|++|++++|.++. +| .+..+++|++|++++|.+++..+  +..+++|++|++++|++++ ++ .+..+++|++|+
T Consensus        40 l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~  113 (308)
T 1h6u_A           40 LDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLD  113 (308)
T ss_dssp             HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEE
T ss_pred             cCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEE
Confidence            3678899999998874 44 58889999999999999886544  8889999999999999885 33 688899999999


Q ss_pred             cccccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccCcccCCccccCcccCccccccCcccc
Q 048351          527 LEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAI  606 (850)
Q Consensus       527 L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~  606 (850)
                      +++|+++ .++. +. .+++|++|++++|.+++..+  +..+++|+.|++++|++++..+  +..+++            
T Consensus       114 l~~n~l~-~~~~-l~-~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~------------  174 (308)
T 1h6u_A          114 LTSTQIT-DVTP-LA-GLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSK------------  174 (308)
T ss_dssp             CTTSCCC-CCGG-GT-TCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTT------------
T ss_pred             CCCCCCC-Cchh-hc-CCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCC------------
Confidence            9999998 4664 44 68999999999999986544  7889999999999999875333  444433            


Q ss_pred             ccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCCCc
Q 048351          607 TFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITP  686 (850)
Q Consensus       607 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~  686 (850)
                                                             |+.|++++|++++..+  +..+++|+.|+|++|++++..  
T Consensus       175 ---------------------------------------L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--  211 (308)
T 1h6u_A          175 ---------------------------------------LTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--  211 (308)
T ss_dssp             ---------------------------------------CCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--
T ss_pred             ---------------------------------------CCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--
Confidence                                                   4889999999986554  888999999999999999764  


Q ss_pred             cccccCCCCeeeCCCCcCccc
Q 048351          687 KIGQLQSLDFLDLSRNQFSGG  707 (850)
Q Consensus       687 ~l~~l~~L~~L~Ls~N~l~~~  707 (850)
                      .+..+++|+.|++++|++++.
T Consensus       212 ~l~~l~~L~~L~l~~N~i~~~  232 (308)
T 1h6u_A          212 PLANTSNLFIVTLTNQTITNQ  232 (308)
T ss_dssp             GGTTCTTCCEEEEEEEEEECC
T ss_pred             cccCCCCCCEEEccCCeeecC
Confidence            388999999999999999853

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.86  E-value=1.6e-21  Score=199.84  Aligned_cols=197  Identities=17%  Similarity=0.185  Sum_probs=165.6

Q ss_pred             CCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCc-ccccCCCccccccCccEEeccC-CccccCCchhhcCCCCcCee
Q 048351          448 QNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNN-FSGKIPNSCGYLQKMLTLSLHH-NNFSGELPSLLKNFTHLRVV  525 (850)
Q Consensus       448 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~l~~l~~L~~L  525 (850)
                      ++|++|++++|++++..+..|.++++|++|++++|+ +++..+..|.++++|++|++++ |++++..+..|.++++|++|
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            478899999999987777789999999999999997 8876667899999999999998 99997777889999999999


Q ss_pred             ccccccceeecchhHHhcCCCCC---EEEccCC-ccccccCcCcCCCCCcc-eeecccccCcccCCc-cccCcccCcccc
Q 048351          526 ALEENSISGNIPAWIGESLLNLV---VLDLRSN-RFYGKIPFQLCHLADIQ-ILDLSLNNISGNIPK-CFNNFTAMTQER  599 (850)
Q Consensus       526 ~L~~N~l~~~ip~~~~~~l~~L~---~L~L~~N-~l~~~~p~~l~~l~~L~-~L~Ls~N~l~~~~p~-~~~~l~~L~~l~  599 (850)
                      ++++|+++ .+|. +. .+++|+   +|++++| .+++..+..|..+++|+ .|++++|+++ .+|. .+.. +      
T Consensus       111 ~l~~n~l~-~lp~-~~-~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~-~------  179 (239)
T 2xwt_C          111 GIFNTGLK-MFPD-LT-KVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNG-T------  179 (239)
T ss_dssp             EEEEECCC-SCCC-CT-TCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTT-C------
T ss_pred             eCCCCCCc-cccc-cc-cccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCC-C------
Confidence            99999998 5886 43 688888   9999999 99887777899999999 9999999998 4443 2222 2      


Q ss_pred             ccCccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCC-CCCCChhhhhcc-ccCCeEecCC
Q 048351          600 SYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNK-LGGEVPEEIMDL-VGLIGLNLSR  677 (850)
Q Consensus       600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~l-~~L~~L~Ls~  677 (850)
                                                                   .|+.|+|++|+ +++..+..|..+ ++|+.|++++
T Consensus       180 ---------------------------------------------~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~  214 (239)
T 2xwt_C          180 ---------------------------------------------KLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ  214 (239)
T ss_dssp             ---------------------------------------------EEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTT
T ss_pred             ---------------------------------------------CCCEEEcCCCCCcccCCHHHhhccccCCcEEECCC
Confidence                                                         34899999995 997778889999 9999999999


Q ss_pred             CcCccCCCccccccCCCCeeeCCCCc
Q 048351          678 NNLTGYITPKIGQLQSLDFLDLSRNQ  703 (850)
Q Consensus       678 N~l~~~ip~~l~~l~~L~~L~Ls~N~  703 (850)
                      |++++. |..  .+++|+.|+++++.
T Consensus       215 N~l~~l-~~~--~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          215 TSVTAL-PSK--GLEHLKELIARNTW  237 (239)
T ss_dssp             CCCCCC-CCT--TCTTCSEEECTTC-
T ss_pred             CccccC-Chh--HhccCceeeccCcc
Confidence            999964 443  67899999998763

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.86  E-value=8.9e-23  Score=220.94  Aligned_cols=256  Identities=16%  Similarity=0.199  Sum_probs=182.0

Q ss_pred             CCCEEecccCcCcccCChhhhhhccCCcCEEEccCCcCcccCCCCCCCCcEEEccCCcCcCccccccccCCCCccEEEcc
Q 048351          377 KLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSLPSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLS  456 (850)
Q Consensus       377 ~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls  456 (850)
                      .++.+++++|.+.   +..+.......++.+++++|.+++..+                     ...  .+++|++|+++
T Consensus        48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~---------------------~~~--~~~~L~~L~L~  101 (336)
T 2ast_B           48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLA---------------------EHF--SPFRVQHMDLS  101 (336)
T ss_dssp             TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCC---------------------SCC--CCBCCCEEECT
T ss_pred             hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccch---------------------hhc--cCCCCCEEEcc
Confidence            3677777777665   222322222455555555555554433                     222  34788888888


Q ss_pred             CCCCCCC-CCcccccCCCCCEEEcCCCcccccCCCccccccCccEEeccCC-cccc-CCchhhcCCCCcCeeccccc-cc
Q 048351          457 SNLLSGK-LPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHN-NFSG-ELPSLLKNFTHLRVVALEEN-SI  532 (850)
Q Consensus       457 ~n~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~-~~p~~l~~l~~L~~L~L~~N-~l  532 (850)
                      +|.+++. ++..+..+++|++|++++|.+++..+..++.+++|++|++++| .+++ .++..+..+++|++|++++| .+
T Consensus       102 ~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l  181 (336)
T 2ast_B          102 NSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDF  181 (336)
T ss_dssp             TCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTC
T ss_pred             CCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCc
Confidence            8888755 6777888888999999998888777778888889999999988 6765 36777888889999999998 88


Q ss_pred             eee-cchhHHhcCC-CCCEEEccCC--ccc-cccCcCcCCCCCcceeeccccc-CcccCCccccCcccCccccccCcccc
Q 048351          533 SGN-IPAWIGESLL-NLVVLDLRSN--RFY-GKIPFQLCHLADIQILDLSLNN-ISGNIPKCFNNFTAMTQERSYNSSAI  606 (850)
Q Consensus       533 ~~~-ip~~~~~~l~-~L~~L~L~~N--~l~-~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~l~~~~~~~~  606 (850)
                      ++. ++..+. .++ +|++|++++|  .++ +.+|..+..+++|+.|++++|. +++..+..+.++++|           
T Consensus       182 ~~~~~~~~~~-~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L-----------  249 (336)
T 2ast_B          182 TEKHVQVAVA-HVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYL-----------  249 (336)
T ss_dssp             CHHHHHHHHH-HSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTC-----------
T ss_pred             ChHHHHHHHH-hcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCC-----------
Confidence            754 555555 688 8999999998  455 4556667788899999999988 666555555444443           


Q ss_pred             ccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCC-CCCCChhhhhccccCCeEecCCCcCccCCC
Q 048351          607 TFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNK-LGGEVPEEIMDLVGLIGLNLSRNNLTGYIT  685 (850)
Q Consensus       607 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip  685 (850)
                                                              +.|++++|. ++......++++++|+.|++++| ++.   
T Consensus       250 ----------------------------------------~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~---  285 (336)
T 2ast_B          250 ----------------------------------------QHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD---  285 (336)
T ss_dssp             ----------------------------------------CEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT---
T ss_pred             ----------------------------------------CEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCH---
Confidence                                                    888998885 32222236788899999999988 332   


Q ss_pred             cccccc-CCCCeeeCCCCcCcccCcccccC
Q 048351          686 PKIGQL-QSLDFLDLSRNQFSGGIPSSLSQ  714 (850)
Q Consensus       686 ~~l~~l-~~L~~L~Ls~N~l~~~~p~~l~~  714 (850)
                      ..+..+ ..++.|++++|++++..|..++.
T Consensus       286 ~~~~~l~~~l~~L~l~~n~l~~~~~~~~~~  315 (336)
T 2ast_B          286 GTLQLLKEALPHLQINCSHFTTIARPTIGN  315 (336)
T ss_dssp             TCHHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred             HHHHHHHhhCcceEEecccCccccCCcccc
Confidence            345555 34888889999999988887664

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.85  E-value=7.6e-21  Score=196.31  Aligned_cols=180  Identities=22%  Similarity=0.219  Sum_probs=106.7

Q ss_pred             CccEEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCCCccccccCccEEeccCCccccCCchhhcCCCCcCeeccc
Q 048351          449 NLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALE  528 (850)
Q Consensus       449 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~  528 (850)
                      ..++++++++.++ .+|..+.  ++++.|++++|.+++..+..|..+++|++|++++|++++..+..|..          
T Consensus        15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~----------   81 (251)
T 3m19_A           15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDD----------   81 (251)
T ss_dssp             GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTT----------
T ss_pred             CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhcc----------
Confidence            3455666666555 3443332  34555555555555554445555555555555555555444444444          


Q ss_pred             cccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccCcccCCccccCcccCccccccCcccccc
Q 048351          529 ENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITF  608 (850)
Q Consensus       529 ~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~  608 (850)
                                     +++|++|++++|++++..+..+..+++|++|+|++|++++..+..+..+++|             
T Consensus        82 ---------------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L-------------  133 (251)
T 3m19_A           82 ---------------LTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKL-------------  133 (251)
T ss_dssp             ---------------CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-------------
T ss_pred             ---------------CCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcc-------------
Confidence                           4555555555555554444455556666666666666664444444444333             


Q ss_pred             ccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCCCccc
Q 048351          609 SYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKI  688 (850)
Q Consensus       609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l  688 (850)
                                                            +.|+|++|++++..+..|+.+++|+.|+|++|++++..+..+
T Consensus       134 --------------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  175 (251)
T 3m19_A          134 --------------------------------------KELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAF  175 (251)
T ss_dssp             --------------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred             --------------------------------------cEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHH
Confidence                                                  667777777776666667777777777777777777666677


Q ss_pred             cccCCCCeeeCCCCcCccc
Q 048351          689 GQLQSLDFLDLSRNQFSGG  707 (850)
Q Consensus       689 ~~l~~L~~L~Ls~N~l~~~  707 (850)
                      ..+++|+.|+|++|++++.
T Consensus       176 ~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          176 DRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             TTCTTCCEEECCSCCBCTT
T ss_pred             hCCCCCCEEEeeCCceeCC
Confidence            7777777777777777765

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.85  E-value=2.2e-22  Score=222.15  Aligned_cols=138  Identities=21%  Similarity=0.304  Sum_probs=93.0

Q ss_pred             CCcCeeccccccce-eecc---hhHHhcCCCCCEEEccCCccc--c---ccCcCcCCCCCcceeecccccCc----ccCC
Q 048351          520 THLRVVALEENSIS-GNIP---AWIGESLLNLVVLDLRSNRFY--G---KIPFQLCHLADIQILDLSLNNIS----GNIP  586 (850)
Q Consensus       520 ~~L~~L~L~~N~l~-~~ip---~~~~~~l~~L~~L~L~~N~l~--~---~~p~~l~~l~~L~~L~Ls~N~l~----~~~p  586 (850)
                      ++|++|++++|+++ +.+|   ..+. .+++|++|++++|+++  |   ..|..+..+++|+.|+|++|.++    +.+|
T Consensus       159 ~~L~~L~L~~n~l~~~~~~~l~~~l~-~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~  237 (386)
T 2ca6_A          159 PPLRSIICGRNRLENGSMKEWAKTFQ-SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA  237 (386)
T ss_dssp             CCCCEEECCSSCCTGGGHHHHHHHHH-HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHH
T ss_pred             CCCcEEECCCCCCCcHHHHHHHHHHH-hCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHH
Confidence            56666666666665 3333   2232 4667777777777766  2   33446677777888888887775    3444


Q ss_pred             ccccCcccCccccccCccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCC----Chh
Q 048351          587 KCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGE----VPE  662 (850)
Q Consensus       587 ~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~----~p~  662 (850)
                      ..+..+++                                                   |+.|+|++|++++.    +|.
T Consensus       238 ~~l~~~~~---------------------------------------------------L~~L~L~~n~i~~~~~~~l~~  266 (386)
T 2ca6_A          238 IALKSWPN---------------------------------------------------LRELGLNDCLLSARGAAAVVD  266 (386)
T ss_dssp             HHGGGCTT---------------------------------------------------CCEEECTTCCCCHHHHHHHHH
T ss_pred             HHHccCCC---------------------------------------------------cCEEECCCCCCchhhHHHHHH
Confidence            44433333                                                   37788888888765    556


Q ss_pred             hhhc--cccCCeEecCCCcCcc----CCCccc-cccCCCCeeeCCCCcCcccCc
Q 048351          663 EIMD--LVGLIGLNLSRNNLTG----YITPKI-GQLQSLDFLDLSRNQFSGGIP  709 (850)
Q Consensus       663 ~l~~--l~~L~~L~Ls~N~l~~----~ip~~l-~~l~~L~~L~Ls~N~l~~~~p  709 (850)
                      .+..  +++|+.|+|++|.+++    .+|..+ .++++|++|++++|++++..|
T Consensus       267 ~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          267 AFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             HHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred             HHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence            6633  7888888888888887    467766 667888899999998887764

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.83  E-value=2.3e-20  Score=202.80  Aligned_cols=223  Identities=19%  Similarity=0.209  Sum_probs=154.9

Q ss_pred             CCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCC-CccccccCccE-EeccCCccccCCchhhcCCCCcCee
Q 048351          448 QNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIP-NSCGYLQKMLT-LSLHHNNFSGELPSLLKNFTHLRVV  525 (850)
Q Consensus       448 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~-L~Ls~N~l~~~~p~~l~~l~~L~~L  525 (850)
                      +++++|+|++|+|+...+.+|.++++|++|+|++|++.+.+| ..|.+++++++ +.+++|++++..|..|..+++|++|
T Consensus        30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L  109 (350)
T 4ay9_X           30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL  109 (350)
T ss_dssp             TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred             CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence            467888888888885555678888888888888888766555 45777777664 5666788887777888888888888


Q ss_pred             ccccccceeecchhHHhcCCCCCEEEccC-CccccccCcCcCCCC-CcceeecccccCcccCCccccCcccCccccccCc
Q 048351          526 ALEENSISGNIPAWIGESLLNLVVLDLRS-NRFYGKIPFQLCHLA-DIQILDLSLNNISGNIPKCFNNFTAMTQERSYNS  603 (850)
Q Consensus       526 ~L~~N~l~~~ip~~~~~~l~~L~~L~L~~-N~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~  603 (850)
                      ++++|+++ .+|...+....++..|++.+ +.+....+..|..+. .++.|++++|+|+...+..+. ..+         
T Consensus       110 ~l~~n~l~-~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~-~~~---------  178 (350)
T 4ay9_X          110 LISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFN-GTQ---------  178 (350)
T ss_dssp             EEEEECCS-SCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSST-TEE---------
T ss_pred             cccccccc-cCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhcc-ccc---------
Confidence            88888887 45544333456677788865 566655555666654 588889999988754333332 222         


Q ss_pred             cccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCC-CCCCCCChhhhhccccCCeEecCCCcCcc
Q 048351          604 SAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSS-NKLGGEVPEEIMDLVGLIGLNLSRNNLTG  682 (850)
Q Consensus       604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  682 (850)
                                                                ++.+++++ |.++...++.|..+++|+.|||++|+|+.
T Consensus       179 ------------------------------------------L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~  216 (350)
T 4ay9_X          179 ------------------------------------------LDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS  216 (350)
T ss_dssp             ------------------------------------------EEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCC
T ss_pred             ------------------------------------------hhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCc
Confidence                                                      37788875 56664444567889999999999999986


Q ss_pred             CCCccccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCCc
Q 048351          683 YITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNN  727 (850)
Q Consensus       683 ~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~  727 (850)
                      ..+..+.++++|+.+++  ++++ .+| .+.++++|+.++++++.
T Consensus       217 lp~~~~~~L~~L~~l~~--~~l~-~lP-~l~~l~~L~~l~l~~~~  257 (350)
T 4ay9_X          217 LPSYGLENLKKLRARST--YNLK-KLP-TLEKLVALMEASLTYPS  257 (350)
T ss_dssp             CCSSSCTTCCEEECTTC--TTCC-CCC-CTTTCCSCCEEECSCHH
T ss_pred             cChhhhccchHhhhccC--CCcC-cCC-CchhCcChhhCcCCCCc
Confidence            55555555444444433  2343 566 47888889999988753

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.82  E-value=9.2e-20  Score=182.39  Aligned_cols=63  Identities=22%  Similarity=0.166  Sum_probs=34.8

Q ss_pred             cEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCCCccccccCCCCeeeCCCCcCcccCcccccCCC
Q 048351          647 KSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVN  716 (850)
Q Consensus       647 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  716 (850)
                      +.|+|++|++++..+..+..+++|+.|++++|.+.+.       +++|+.|+++.|+++|.+|..++.++
T Consensus       127 ~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~L~~~~n~~~g~ip~~~~~l~  189 (208)
T 2o6s_A          127 KDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSVA  189 (208)
T ss_dssp             CEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCC-------TTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred             CEEECCCCccceeCHHHhccCCCccEEEecCCCeecC-------CCCHHHHHHHHHhCCceeeccCcccc
Confidence            4555555555544444455555556666666555432       23556666666666666666555544

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.82  E-value=5.7e-20  Score=209.89  Aligned_cols=188  Identities=23%  Similarity=0.321  Sum_probs=110.1

Q ss_pred             CccEEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCCCccccccCccEEeccCCccccCCchhhcCCCCcCeeccc
Q 048351          449 NLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALE  528 (850)
Q Consensus       449 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~  528 (850)
                      +++.|++++|.+++ +|..+  .++|++|++++|+++ .+|   ..+++|++|++++|++++ +|. +..  +|++|+++
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls  128 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD  128 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred             CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence            56666666666654 44433  255666666666666 444   335666666666666664 444 433  66666666


Q ss_pred             cccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccCcccCCccccCcccCccccccCcccccc
Q 048351          529 ENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITF  608 (850)
Q Consensus       529 ~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~  608 (850)
                      +|++++ +|.    .+++|++|++++|.+++ +|.   .+++|++|+|++|++++ +|. +.  ++              
T Consensus       129 ~N~l~~-lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~--------------  181 (571)
T 3cvr_A          129 NNQLTM-LPE----LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ES--------------  181 (571)
T ss_dssp             SSCCSC-CCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TT--------------
T ss_pred             CCcCCC-CCC----cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CC--------------
Confidence            666663 554    25666666666666664 443   35566666666666654 443 22  22              


Q ss_pred             ccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccC-------CeEecCCCcCc
Q 048351          609 SYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGL-------IGLNLSRNNLT  681 (850)
Q Consensus       609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L-------~~L~Ls~N~l~  681 (850)
                                                           |+.|+|++|+|+ .+|. +..  +|       +.|+|++|+|+
T Consensus       182 -------------------------------------L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~  220 (571)
T 3cvr_A          182 -------------------------------------LEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT  220 (571)
T ss_dssp             -------------------------------------CCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC
T ss_pred             -------------------------------------CCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce
Confidence                                                 256666666666 4444 443  45       67777777776


Q ss_pred             cCCCccccccCCCCeeeCCCCcCcccCcccccCCC
Q 048351          682 GYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVN  716 (850)
Q Consensus       682 ~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  716 (850)
                       .+|..+..+++|+.|+|++|++++.+|..+..++
T Consensus       221 -~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~  254 (571)
T 3cvr_A          221 -HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT  254 (571)
T ss_dssp             -CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred             -ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence             3566666677777777777777777776666543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.82  E-value=6.4e-20  Score=209.51  Aligned_cols=182  Identities=22%  Similarity=0.327  Sum_probs=155.0

Q ss_pred             CCCEEEcCCCcccccCCCccccccCccEEeccCCccccCCchhhcCCCCcCeeccccccceeecchhHHhcCCCCCEEEc
Q 048351          473 MLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDL  552 (850)
Q Consensus       473 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L  552 (850)
                      +|+.|++++|.+++ +|..+  .++|++|++++|+++ .+|   ..+++|++|++++|++++ +|. +.   .+|++|++
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~---~~L~~L~L  127 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LP---ASLKHLDV  127 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CC---TTCCEEEC
T ss_pred             CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hh---cCCCEEEC
Confidence            89999999999996 77665  378999999999999 677   557999999999999995 888 54   29999999


Q ss_pred             cCCccccccCcCcCCCCCcceeecccccCcccCCccccCcccCccccccCccccccccccCCCcccCccceEeeEEEEEe
Q 048351          553 RSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTW  632 (850)
Q Consensus       553 ~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  632 (850)
                      ++|.+++ +|.   .+++|+.|++++|+|++ +|.   .+++                                      
T Consensus       128 s~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~--------------------------------------  161 (571)
T 3cvr_A          128 DNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTS--------------------------------------  161 (571)
T ss_dssp             CSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTT--------------------------------------
T ss_pred             CCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCC--------------------------------------
Confidence            9999997 665   68999999999999986 554   2233                                      


Q ss_pred             cCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCCCccccccCCC-------CeeeCCCCcCc
Q 048351          633 KGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSL-------DFLDLSRNQFS  705 (850)
Q Consensus       633 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L-------~~L~Ls~N~l~  705 (850)
                                   |+.|+|++|++++ +|. |.  ++|+.|+|++|+|+ .+|. +..  +|       +.|+|++|+|+
T Consensus       162 -------------L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~  220 (571)
T 3cvr_A          162 -------------LEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT  220 (571)
T ss_dssp             -------------CCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC
T ss_pred             -------------cCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce
Confidence                         3899999999997 676 66  89999999999999 5676 665  77       99999999999


Q ss_pred             ccCcccccCCCCCCEEEcCCCcCcccCCC
Q 048351          706 GGIPSSLSQVNRLSVMDLSHNNLSGKIPT  734 (850)
Q Consensus       706 ~~~p~~l~~l~~L~~L~ls~N~l~g~iP~  734 (850)
                       .+|..+..+++|++|++++|+++|.+|.
T Consensus       221 -~lp~~l~~l~~L~~L~L~~N~l~~~~p~  248 (571)
T 3cvr_A          221 -HIPENILSLDPTCTIILEDNPLSSRIRE  248 (571)
T ss_dssp             -CCCGGGGGSCTTEEEECCSSSCCHHHHH
T ss_pred             -ecCHHHhcCCCCCEEEeeCCcCCCcCHH
Confidence             5888888899999999999999998774

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.82  E-value=6e-20  Score=183.77  Aligned_cols=81  Identities=22%  Similarity=0.236  Sum_probs=53.0

Q ss_pred             cEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCCCccccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCC
Q 048351          647 KSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHN  726 (850)
Q Consensus       647 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N  726 (850)
                      ++|+|++|++++..+..+..+++|+.|+|++|++++..+..+..+++|++|++++|.+.+.       ++.|++|+++.|
T Consensus       103 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~L~~~~n  175 (208)
T 2o6s_A          103 KELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWIN  175 (208)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCC-------TTTTHHHHHHHH
T ss_pred             CEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecC-------CCCHHHHHHHHH
Confidence            5566666666655555566667777777777777765555566677777777777766543       345666777777


Q ss_pred             cCcccCCC
Q 048351          727 NLSGKIPT  734 (850)
Q Consensus       727 ~l~g~iP~  734 (850)
                      +++|.+|.
T Consensus       176 ~~~g~ip~  183 (208)
T 2o6s_A          176 KHSGVVRN  183 (208)
T ss_dssp             HCTTTBBC
T ss_pred             hCCceeec
Confidence            77777764

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.81  E-value=3.5e-20  Score=186.84  Aligned_cols=157  Identities=22%  Similarity=0.233  Sum_probs=130.2

Q ss_pred             CeeccccccceeecchhHHhcCCCCCEEEccCCccccccC-cCcCCCCCcceeecccccCcccCCccccCcccCcccccc
Q 048351          523 RVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIP-FQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSY  601 (850)
Q Consensus       523 ~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~  601 (850)
                      +.+++++|.++ .+|..+.   ..+++|++++|.+++..| ..|..+++|++|+|++|+|++..+..|.++++|      
T Consensus        14 ~~l~~s~n~l~-~iP~~~~---~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L------   83 (220)
T 2v70_A           14 TTVDCSNQKLN-KIPEHIP---QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGV------   83 (220)
T ss_dssp             TEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTC------
T ss_pred             CEeEeCCCCcc-cCccCCC---CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCC------
Confidence            35666667665 5665543   356788888888876644 457788888888888888887776667666555      


Q ss_pred             CccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCc
Q 048351          602 NSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLT  681 (850)
Q Consensus       602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  681 (850)
                                                                   ++|+|++|++++..|..|..+++|++|+|++|+++
T Consensus        84 ---------------------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  118 (220)
T 2v70_A           84 ---------------------------------------------NEILLTSNRLENVQHKMFKGLESLKTLMLRSNRIT  118 (220)
T ss_dssp             ---------------------------------------------CEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCC
T ss_pred             ---------------------------------------------CEEECCCCccCccCHhHhcCCcCCCEEECCCCcCC
Confidence                                                         78999999999888888999999999999999999


Q ss_pred             cCCCccccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCCcCcccCCC
Q 048351          682 GYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGKIPT  734 (850)
Q Consensus       682 ~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~  734 (850)
                      +..|..|..+++|++|+|++|++++..|..|..+++|++|++++|+++|..+.
T Consensus       119 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l  171 (220)
T 2v70_A          119 CVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYL  171 (220)
T ss_dssp             CBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGG
T ss_pred             eECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCch
Confidence            98899999999999999999999999999999999999999999999987553

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.81  E-value=1.1e-19  Score=197.31  Aligned_cols=244  Identities=16%  Similarity=0.110  Sum_probs=173.3

Q ss_pred             cEEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCCCccccccCccEEeccCCccccCCc-hhhcCCCCcCe-eccc
Q 048351          451 VYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELP-SLLKNFTHLRV-VALE  528 (850)
Q Consensus       451 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~-L~L~  528 (850)
                      ++++-++++++ .+|..+  .+++++|+|++|+|+...+.+|.++++|++|+|++|++.+.+| ..|.++++++. +.++
T Consensus        12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~   88 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   88 (350)
T ss_dssp             TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred             CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence            46777888887 566554  3578888999888886555678888888888888888866555 46778877765 5566


Q ss_pred             cccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeeccc-ccCcccCCccccCcccCccccccCccccc
Q 048351          529 ENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSL-NNISGNIPKCFNNFTAMTQERSYNSSAIT  607 (850)
Q Consensus       529 ~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~l~~~~~~~~~  607 (850)
                      .|+++ .++...+..+++|++|++++|++++..+..+.....+..+++.+ |++....+..|..+.              
T Consensus        89 ~N~l~-~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~--------------  153 (350)
T 4ay9_X           89 ANNLL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLS--------------  153 (350)
T ss_dssp             ETTCC-EECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSB--------------
T ss_pred             CCccc-ccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcc--------------
Confidence            78887 56555545788888888888888877666676777777888765 455544333443322              


Q ss_pred             cccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCC-CcCccCCCc
Q 048351          608 FSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSR-NNLTGYITP  686 (850)
Q Consensus       608 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~-N~l~~~ip~  686 (850)
                                                          ..++.|+|++|+|+. +|.......+|+.|++++ |.++...+.
T Consensus       154 ------------------------------------~~l~~L~L~~N~i~~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~  196 (350)
T 4ay9_X          154 ------------------------------------FESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDNNNLEELPND  196 (350)
T ss_dssp             ------------------------------------SSCEEEECCSSCCCE-ECTTSSTTEEEEEEECTTCTTCCCCCTT
T ss_pred             ------------------------------------hhhhhhccccccccC-CChhhccccchhHHhhccCCcccCCCHH
Confidence                                                124789999999994 555555667899999985 667755556


Q ss_pred             cccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCCcCcccCCCCCcCCCcCccccCCCCCCC
Q 048351          687 KIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGKIPTGTQLQSFNASVYDGNPELC  753 (850)
Q Consensus       687 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~lc  753 (850)
                      .|+++++|++|||++|+|+...+..|   ..|+.|.+.+++--..+|....+..+....+ ++++.|
T Consensus       197 ~f~~l~~L~~LdLs~N~l~~lp~~~~---~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l-~~~~~c  259 (350)
T 4ay9_X          197 VFHGASGPVILDISRTRIHSLPSYGL---ENLKKLRARSTYNLKKLPTLEKLVALMEASL-TYPSHC  259 (350)
T ss_dssp             TTTTEECCSEEECTTSCCCCCCSSSC---TTCCEEECTTCTTCCCCCCTTTCCSCCEEEC-SCHHHH
T ss_pred             HhccCcccchhhcCCCCcCccChhhh---ccchHhhhccCCCcCcCCCchhCcChhhCcC-CCCccc
Confidence            78999999999999999996655555   4566666665544447786555555544333 466666

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.79  E-value=6.9e-19  Score=177.34  Aligned_cols=154  Identities=21%  Similarity=0.270  Sum_probs=129.9

Q ss_pred             CeeccccccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccCcccCCccccCcccCccccccC
Q 048351          523 RVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYN  602 (850)
Q Consensus       523 ~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~  602 (850)
                      +.++++++.++ .+|..+.   ++++.|++++|.+++..+..|..+++|++|+|++|++++..|..|.++++|       
T Consensus        14 ~~v~c~~~~l~-~iP~~l~---~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L-------   82 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP---ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSL-------   82 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC---TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSC-------
T ss_pred             CEEEcCCCCcC-cCCCccC---cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCC-------
Confidence            45666677776 6666542   578888888888887777788888889999999999888778777766655       


Q ss_pred             ccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCcc
Q 048351          603 SSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTG  682 (850)
Q Consensus       603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  682 (850)
                                                                  ++|+|++|++++..+..|..+++|+.|+|++|++++
T Consensus        83 --------------------------------------------~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~  118 (220)
T 2v9t_B           83 --------------------------------------------NSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINC  118 (220)
T ss_dssp             --------------------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred             --------------------------------------------CEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCE
Confidence                                                        789999999987777778889999999999999999


Q ss_pred             CCCccccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCCcCccc
Q 048351          683 YITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGK  731 (850)
Q Consensus       683 ~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~  731 (850)
                      ..|..|..+++|+.|+|++|++++..+..|..+++|++|++++|++.+.
T Consensus       119 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~  167 (220)
T 2v9t_B          119 LRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICD  167 (220)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred             eCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCC
Confidence            8899999999999999999999988888899999999999999999864

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.77  E-value=2e-18  Score=174.02  Aligned_cols=157  Identities=18%  Similarity=0.193  Sum_probs=119.2

Q ss_pred             cEEeccCCccccCCchhhcCCCCcCeeccccccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeeccc
Q 048351          499 LTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSL  578 (850)
Q Consensus       499 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~  578 (850)
                      +.+++++|.++ .+|..+.  ..+++|++++|++++..|...+..+++|++|++++|++++..+..|..+++|++|+|++
T Consensus        14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   90 (220)
T 2v70_A           14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS   90 (220)
T ss_dssp             TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence            35566666555 3444332  34566777777776443444344678888888888888877777888888888888888


Q ss_pred             ccCcccCCccccCcccCccccccCccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCC
Q 048351          579 NNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGG  658 (850)
Q Consensus       579 N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~  658 (850)
                      |++++..|..|.++++|                                                   ++|+|++|++++
T Consensus        91 N~l~~~~~~~~~~l~~L---------------------------------------------------~~L~Ls~N~l~~  119 (220)
T 2v70_A           91 NRLENVQHKMFKGLESL---------------------------------------------------KTLMLRSNRITC  119 (220)
T ss_dssp             SCCCCCCGGGGTTCSSC---------------------------------------------------CEEECTTSCCCC
T ss_pred             CccCccCHhHhcCCcCC---------------------------------------------------CEEECCCCcCCe
Confidence            88887766666665555                                                   788999999988


Q ss_pred             CChhhhhccccCCeEecCCCcCccCCCccccccCCCCeeeCCCCcCcccCc
Q 048351          659 EVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIP  709 (850)
Q Consensus       659 ~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p  709 (850)
                      ..|..|..+++|+.|+|++|++++..|..|..+++|+.|+|++|.+++..+
T Consensus       120 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  170 (220)
T 2v70_A          120 VGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY  170 (220)
T ss_dssp             BCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred             ECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence            888889999999999999999998888899999999999999999886654

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.77  E-value=2.8e-18  Score=174.14  Aligned_cols=156  Identities=23%  Similarity=0.215  Sum_probs=132.0

Q ss_pred             cCeeccccccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccCcccCCccccCcccCcccccc
Q 048351          522 LRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSY  601 (850)
Q Consensus       522 L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~  601 (850)
                      -+.++.++++++ .+|..+   .++|++|++++|.+++..|..|..+++|++|+|++|++++..+..|..+++|      
T Consensus        21 ~~~v~c~~~~l~-~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L------   90 (229)
T 3e6j_A           21 GTTVDCRSKRHA-SVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQL------   90 (229)
T ss_dssp             TTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC------
T ss_pred             CCEeEccCCCcC-ccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCc------
Confidence            445677777776 777654   3688899999999988888888889999999999999876555555555555      


Q ss_pred             CccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCc
Q 048351          602 NSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLT  681 (850)
Q Consensus       602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  681 (850)
                                                                   +.|+|++|++++..+..|..+++|+.|+|++|+++
T Consensus        91 ---------------------------------------------~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~  125 (229)
T 3e6j_A           91 ---------------------------------------------TVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT  125 (229)
T ss_dssp             ---------------------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             ---------------------------------------------CEEECCCCcCCccChhHhCcchhhCeEeccCCccc
Confidence                                                         88999999999888888899999999999999999


Q ss_pred             cCCCccccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCCcCcccCC
Q 048351          682 GYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGKIP  733 (850)
Q Consensus       682 ~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP  733 (850)
                       .+|..+..+++|+.|+|++|++++..+..|..+++|++|++++|++.+..+
T Consensus       126 -~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A          126 -ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             -SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred             -ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence             678899999999999999999998888889999999999999999998765

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.77  E-value=9.4e-19  Score=190.85  Aligned_cols=176  Identities=26%  Similarity=0.271  Sum_probs=102.2

Q ss_pred             CEEEcCCCcccccCCCccccccCccEEeccCCccccCCchhhc-CCCCcCeeccccccceeecchhHHhcCCCCCEEEcc
Q 048351          475 RILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLK-NFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLR  553 (850)
Q Consensus       475 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~  553 (850)
                      +.++++++.++ .+|..+.  ..++.|+|++|++++..+..+. ++++|+.|+|++|+++ .++...+.++++|++|+|+
T Consensus        21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~Ls   96 (361)
T 2xot_A           21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLS   96 (361)
T ss_dssp             TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECC
T ss_pred             CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCC-ccChhhccCCCCCCEEECC
Confidence            57777777777 4565443  3567777777777765555565 6667777777777766 3333322356666666666


Q ss_pred             CCccccccCcCcCCCCCcceeecccccCcccCCccccCcccCccccccCccccccccccCCCcccCccceEeeEEEEEec
Q 048351          554 SNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWK  633 (850)
Q Consensus       554 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  633 (850)
                      +|++++..+..|..+++|++|+|++|+|++..|..|.++++|                                      
T Consensus        97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L--------------------------------------  138 (361)
T 2xot_A           97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQL--------------------------------------  138 (361)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC--------------------------------------
T ss_pred             CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccC--------------------------------------
Confidence            666665555556666666666666666665555555444433                                      


Q ss_pred             CcccccccccccccEEEcCCCCCCCCChhhh---hccccCCeEecCCCcCccCCCccccccCC--CCeeeCCCCcCc
Q 048351          634 GSEYEYKNTLGLVKSVDLSSNKLGGEVPEEI---MDLVGLIGLNLSRNNLTGYITPKIGQLQS--LDFLDLSRNQFS  705 (850)
Q Consensus       634 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l---~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~--L~~L~Ls~N~l~  705 (850)
                                   +.|+|++|+|++..+..|   ..+++|+.|+|++|+|++..+..+..++.  |+.|+|++|.+.
T Consensus       139 -------------~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          139 -------------QKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             -------------CEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             -------------CEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence                         556666666654333333   34555555555555555444444555544  255555555554

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.76  E-value=1.4e-18  Score=183.22  Aligned_cols=120  Identities=23%  Similarity=0.313  Sum_probs=56.6

Q ss_pred             EEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCCCccccccCccEEeccCCccccCCchhhcCCCCcCeecccccc
Q 048351          452 YLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENS  531 (850)
Q Consensus       452 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~  531 (850)
                      .+.+..+.+++..  .+..+++|+.|++++|.+.+. + .+..+++|++|++++|++++..+  +..+++|++|++++|+
T Consensus        28 ~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~  101 (291)
T 1h6t_A           28 KDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENK  101 (291)
T ss_dssp             HHHTTCSCTTSEE--CHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred             HHHhcCCCccccc--chhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCc
Confidence            3344444444322  233455566666666665532 2 35555566666666665554322  5555555555555555


Q ss_pred             ceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccCc
Q 048351          532 ISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNIS  582 (850)
Q Consensus       532 l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  582 (850)
                      ++ .+|. +. .+++|++|++++|++++.  ..+..+++|+.|++++|+++
T Consensus       102 l~-~~~~-l~-~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~  147 (291)
T 1h6t_A          102 VK-DLSS-LK-DLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKIT  147 (291)
T ss_dssp             CC-CGGG-GT-TCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCC
T ss_pred             CC-CChh-hc-cCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCC
Confidence            54 2332 22 344455555555444432  12333444444444444433

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.76  E-value=3.3e-18  Score=180.32  Aligned_cols=190  Identities=21%  Similarity=0.259  Sum_probs=157.8

Q ss_pred             CCCEEEcCCCcccccCCCccccccCccEEeccCCccccCCchhhcCCCCcCeeccccccceeecchhHHhcCCCCCEEEc
Q 048351          473 MLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDL  552 (850)
Q Consensus       473 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L  552 (850)
                      .+..+.+..+.+++..  .+..+++|+.|++++|.+... + .+..+++|++|++++|+++ .++. +. .+++|++|++
T Consensus        25 ~~~~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~-~~~~-l~-~l~~L~~L~l   97 (291)
T 1h6t_A           25 ETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLT-DIKP-LA-NLKNLGWLFL   97 (291)
T ss_dssp             HHHHHHTTCSCTTSEE--CHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCC-CCGG-GT-TCTTCCEEEC
T ss_pred             HHHHHHhcCCCccccc--chhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccC-CCcc-cc-cCCCCCEEEC
Confidence            3445567777776543  346789999999999999854 4 4889999999999999998 4555 44 7999999999


Q ss_pred             cCCccccccCcCcCCCCCcceeecccccCcccCCccccCcccCccccccCccccccccccCCCcccCccceEeeEEEEEe
Q 048351          553 RSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTW  632 (850)
Q Consensus       553 ~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  632 (850)
                      ++|.+++ +| .+..+++|++|++++|++++.  +.+..+                                        
T Consensus        98 ~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~~--~~l~~l----------------------------------------  133 (291)
T 1h6t_A           98 DENKVKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHL----------------------------------------  133 (291)
T ss_dssp             CSSCCCC-GG-GGTTCTTCCEEECTTSCCCCC--GGGGGC----------------------------------------
T ss_pred             CCCcCCC-Ch-hhccCCCCCEEECCCCcCCCC--hhhcCC----------------------------------------
Confidence            9999986 33 489999999999999999853  233333                                        


Q ss_pred             cCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCCCccccccCCCCeeeCCCCcCcccCcccc
Q 048351          633 KGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSL  712 (850)
Q Consensus       633 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l  712 (850)
                                 +.|+.|++++|++++.  ..+..+++|+.|++++|++++..|  +..+++|+.|++++|++++. | .+
T Consensus       134 -----------~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l  196 (291)
T 1h6t_A          134 -----------PQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-AL  196 (291)
T ss_dssp             -----------TTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GG
T ss_pred             -----------CCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC-h-hh
Confidence                       3458999999999976  679999999999999999997655  99999999999999999964 4 48


Q ss_pred             cCCCCCCEEEcCCCcCcc
Q 048351          713 SQVNRLSVMDLSHNNLSG  730 (850)
Q Consensus       713 ~~l~~L~~L~ls~N~l~g  730 (850)
                      ..+++|++|++++|+++.
T Consensus       197 ~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          197 AGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             TTCTTCSEEEEEEEEEEC
T ss_pred             ccCCCCCEEECcCCcccC
Confidence            999999999999999985

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.75  E-value=6.1e-20  Score=210.98  Aligned_cols=189  Identities=19%  Similarity=0.212  Sum_probs=97.2

Q ss_pred             cCCCCCEEEcCCCcccccCCCccccccCccEEeccCCc-------------cccCCchhhcCCCCcCeec-cccccceee
Q 048351          470 QFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNN-------------FSGELPSLLKNFTHLRVVA-LEENSISGN  535 (850)
Q Consensus       470 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~-------------l~~~~p~~l~~l~~L~~L~-L~~N~l~~~  535 (850)
                      .++.|+.|+|++|.++ .+|..++.+++|+.|++++|.             ..+..|..+..+++|+.|+ ++.|.+. .
T Consensus       347 ~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~-~  424 (567)
T 1dce_A          347 TDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD-D  424 (567)
T ss_dssp             TTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-H
T ss_pred             cCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-h
Confidence            3455556666666655 455556666666666665543             4455666677777777776 5555443 2


Q ss_pred             cchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccCcccCCccccCcccCccccccCccccccccccCCC
Q 048351          536 IPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSR  615 (850)
Q Consensus       536 ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~  615 (850)
                      ++           .+.+++|.++...+      ..|+.|+|++|.+++ +|. +.++++|                    
T Consensus       425 L~-----------~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L--------------------  465 (567)
T 1dce_A          425 LR-----------SKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLV--------------------  465 (567)
T ss_dssp             HH-----------HHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGTTC--------------------
T ss_pred             hh-----------hhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccccccC--------------------
Confidence            22           22233333332211      124555555555543 232 3332222                    


Q ss_pred             cccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCCCccccccCCCC
Q 048351          616 TTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLD  695 (850)
Q Consensus       616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~  695 (850)
                                                     +.|+|++|+|+ .+|..++.+++|+.|+|++|+|++ +| .++++++|+
T Consensus       466 -------------------------------~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~  511 (567)
T 1dce_A          466 -------------------------------THLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQ  511 (567)
T ss_dssp             -------------------------------CEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCC
T ss_pred             -------------------------------cEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCc
Confidence                                           45555555555 445555555555555555555554 33 455555555


Q ss_pred             eeeCCCCcCcccC-cccccCCCCCCEEEcCCCcCcccCC
Q 048351          696 FLDLSRNQFSGGI-PSSLSQVNRLSVMDLSHNNLSGKIP  733 (850)
Q Consensus       696 ~L~Ls~N~l~~~~-p~~l~~l~~L~~L~ls~N~l~g~iP  733 (850)
                      .|+|++|+|++.+ |..+..+++|++|++++|++++.+|
T Consensus       512 ~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~  550 (567)
T 1dce_A          512 ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG  550 (567)
T ss_dssp             EEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred             EEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence            5555555555544 5555555555555555555555444

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.75  E-value=2e-18  Score=199.53  Aligned_cols=124  Identities=24%  Similarity=0.274  Sum_probs=53.0

Q ss_pred             CCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCCCccccccCccEEeccCCccccCCchhhcCCCCcCeecc
Q 048351          448 QNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVAL  527 (850)
Q Consensus       448 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L  527 (850)
                      ++|+.|++++|.+.. ++ .+..+++|+.|+|++|.+++..|  +..+++|+.|+|++|++++ +| .+..+++|+.|+|
T Consensus        43 ~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~L  116 (605)
T 1m9s_A           43 NSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSL  116 (605)
T ss_dssp             TTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEEC
T ss_pred             CCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEe
Confidence            344444555444442 22 24444444555554444443322  4444444444444444442 12 3444444444444


Q ss_pred             ccccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccCc
Q 048351          528 EENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNIS  582 (850)
Q Consensus       528 ~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  582 (850)
                      ++|+++ .++. +. .+++|+.|+|++|.+++.  ..+..+++|+.|+|++|+++
T Consensus       117 s~N~l~-~l~~-l~-~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~  166 (605)
T 1m9s_A          117 EHNGIS-DING-LV-HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS  166 (605)
T ss_dssp             TTSCCC-CCGG-GG-GCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCC
T ss_pred             cCCCCC-CCcc-cc-CCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCC
Confidence            444444 2221 22 344444444444444432  23344444444444444443

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.75  E-value=2.3e-17  Score=167.37  Aligned_cols=135  Identities=21%  Similarity=0.255  Sum_probs=92.5

Q ss_pred             CCCCCccccceEecCCCCCEEEEEcCCCCCcccchhhhhccCCCCCCcccccccccCCCCCCEEeCCCCCCCCCCCCccc
Q 048351           65 EKKDCCNWRGVRCSNQTGHVKVLDLHGTGRVKVLDIQTRVMSGNASLRGTLNPALLKLHYLRHLDLSFNNFSGSQIPMFI  144 (850)
Q Consensus        65 ~~~~~c~w~gv~C~~~~~~v~~l~L~~~~~l~~l~l~~~~~~~~~~l~g~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~  144 (850)
                      .++..|+|++|.|++.                             .+ +.+|..+.  ++|++|+|++|.+++. .|..+
T Consensus        14 ~~~~~Cs~~~v~c~~~-----------------------------~l-~~ip~~~~--~~L~~L~Ls~n~i~~~-~~~~~   60 (229)
T 3e6j_A           14 PSQCSCSGTTVDCRSK-----------------------------RH-ASVPAGIP--TNAQILYLHDNQITKL-EPGVF   60 (229)
T ss_dssp             CTTCEEETTEEECTTS-----------------------------CC-SSCCSCCC--TTCSEEECCSSCCCCC-CTTTT
T ss_pred             CCCCEEeCCEeEccCC-----------------------------Cc-CccCCCCC--CCCCEEEcCCCccCcc-CHHHh
Confidence            3577899999999642                             11 23444333  7899999999999975 67888


Q ss_pred             CCCCCCCEEeCCCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCCccccccCCCccEEeCCCCCCCCCcchhhhhcCCCC
Q 048351          145 GSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPS  224 (850)
Q Consensus       145 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~  224 (850)
                      ..+++|++|+|++|.+++..+..|..+++|++|+|++|++. ......+..+++|++|+|++|+++.+   +..+..+++
T Consensus        61 ~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~l---p~~~~~l~~  136 (229)
T 3e6j_A           61 DSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT-VLPSAVFDRLVHLKELFMCCNKLTEL---PRGIERLTH  136 (229)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCSC---CTTGGGCTT
T ss_pred             hCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCC-ccChhHhCcchhhCeEeccCCccccc---CcccccCCC
Confidence            89999999999999998666667788888888888888763 22233456666666666666666642   333444444


Q ss_pred             CcEEEccCCCCC
Q 048351          225 LKTLYLEQCDLQ  236 (850)
Q Consensus       225 L~~L~L~~n~l~  236 (850)
                      |++|+|++|.++
T Consensus       137 L~~L~L~~N~l~  148 (229)
T 3e6j_A          137 LTHLALDQNQLK  148 (229)
T ss_dssp             CSEEECCSSCCC
T ss_pred             CCEEECCCCcCC
Confidence            444444444444

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.74  E-value=9.9e-18  Score=168.84  Aligned_cols=152  Identities=22%  Similarity=0.267  Sum_probs=106.4

Q ss_pred             EEeccCCccccCCchhhcCCCCcCeeccccccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccc
Q 048351          500 TLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLN  579 (850)
Q Consensus       500 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N  579 (850)
                      .++++++.++ .+|..+.  ++|+.|++++|+++ .+|...+..+++|++|+|++|++++..|..|..+++|++|+|++|
T Consensus        15 ~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~-~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           15 IVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             EEECTTSCCS-SCCSSCC--TTCCEEECCSSCCC-EECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred             EEEcCCCCcC-cCCCccC--cCCCEEECCCCcCC-CcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence            4455555554 3343332  45666666666665 344333335677777777777777666777777778888888888


Q ss_pred             cCcccCCccccCcccCccccccCccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCC
Q 048351          580 NISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGE  659 (850)
Q Consensus       580 ~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~  659 (850)
                      +|++..+..|.++++|                                                   +.|+|++|++++.
T Consensus        91 ~l~~l~~~~f~~l~~L---------------------------------------------------~~L~L~~N~l~~~  119 (220)
T 2v9t_B           91 KITELPKSLFEGLFSL---------------------------------------------------QLLLLNANKINCL  119 (220)
T ss_dssp             CCCCCCTTTTTTCTTC---------------------------------------------------CEEECCSSCCCCC
T ss_pred             cCCccCHhHccCCCCC---------------------------------------------------CEEECCCCCCCEe
Confidence            8775544445554444                                                   7788888888888


Q ss_pred             ChhhhhccccCCeEecCCCcCccCCCccccccCCCCeeeCCCCcCcc
Q 048351          660 VPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSG  706 (850)
Q Consensus       660 ~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~  706 (850)
                      .|..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|.+..
T Consensus       120 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B          120 RVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             CHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence            88888888888888888888888777778888889999999988874

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.74  E-value=6.3e-18  Score=184.31  Aligned_cols=176  Identities=26%  Similarity=0.222  Sum_probs=142.1

Q ss_pred             EEEccCCcCcccCCCCCCCCcEEEccCCcCcCccccccccCCCCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCccc
Q 048351          406 GIDISSNHLEGPSPSLPSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFS  485 (850)
Q Consensus       406 ~L~l~~N~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~  485 (850)
                      .++++++.++..+...+..++.|++++|.+++..+......+++|++|+|++|++++..+..|.++++|++|+|++|+++
T Consensus        22 ~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~  101 (361)
T 2xot_A           22 ILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLH  101 (361)
T ss_dssp             EEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred             EEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCC
Confidence            45666666655444445567777777777776554433224588999999999999888888999999999999999999


Q ss_pred             ccCCCccccccCccEEeccCCccccCCchhhcCCCCcCeeccccccceeecchhHH---hcCCCCCEEEccCCccccccC
Q 048351          486 GKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIG---ESLLNLVVLDLRSNRFYGKIP  562 (850)
Q Consensus       486 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~---~~l~~L~~L~L~~N~l~~~~p  562 (850)
                      +..+..|..+++|++|+|++|++++..|..|.++++|+.|+|++|+++ .+|..++   ..+++|++|+|++|++++..+
T Consensus       102 ~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~  180 (361)
T 2xot_A          102 TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPL  180 (361)
T ss_dssp             EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCGGGTC----CTTCCEEECCSSCCCCCCH
T ss_pred             cCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC-eeCHHHhcCcccCCcCCEEECCCCCCCccCH
Confidence            877778999999999999999999888889999999999999999998 6887765   358999999999999996665


Q ss_pred             cCcCCCCC--cceeecccccCc
Q 048351          563 FQLCHLAD--IQILDLSLNNIS  582 (850)
Q Consensus       563 ~~l~~l~~--L~~L~Ls~N~l~  582 (850)
                      ..+..++.  ++.|+|++|++.
T Consensus       181 ~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          181 TDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             HHHHHSCHHHHTTEECCSSCEE
T ss_pred             HHhhhccHhhcceEEecCCCcc
Confidence            66777776  488999999986

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.74  E-value=1.5e-17  Score=192.08  Aligned_cols=147  Identities=28%  Similarity=0.311  Sum_probs=72.8

Q ss_pred             CCCCcEEEccCCcCcCccccccccCCCCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCCCccccccCccEE
Q 048351          422 PSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTL  501 (850)
Q Consensus       422 ~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  501 (850)
                      +..|+.|++++|.+..... +  ..+++|+.|+|++|.+++..|  +..+++|+.|+|++|.+++ +| .+..+++|+.|
T Consensus        42 L~~L~~L~l~~n~i~~l~~-l--~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L  114 (605)
T 1m9s_A           42 LNSIDQIIANNSDIKSVQG-I--QYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSL  114 (605)
T ss_dssp             HTTCCCCBCTTCCCCCCTT-G--GGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEE
T ss_pred             CCCCCEEECcCCCCCCChH-H--ccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEE
Confidence            4455555555555544321 1  123455555555555554332  5555555555555555543 22 45555555555


Q ss_pred             eccCCccccCCchhhcCCCCcCeeccccccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccC
Q 048351          502 SLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNI  581 (850)
Q Consensus       502 ~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  581 (850)
                      +|++|++++ + ..+..+++|+.|+|++|+++ .+ ..+. .+++|+.|+|++|.+.+..|  +..+++|+.|+|++|+|
T Consensus       115 ~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~-~l-~~l~-~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i  187 (605)
T 1m9s_A          115 SLEHNGISD-I-NGLVHLPQLESLYLGNNKIT-DI-TVLS-RLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI  187 (605)
T ss_dssp             ECTTSCCCC-C-GGGGGCTTCSEEECCSSCCC-CC-GGGG-SCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred             EecCCCCCC-C-ccccCCCccCEEECCCCccC-Cc-hhhc-ccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCC
Confidence            555555553 2 23455555555555555555 22 2222 45555555555555554433  45555555555555555


Q ss_pred             c
Q 048351          582 S  582 (850)
Q Consensus       582 ~  582 (850)
                      +
T Consensus       188 ~  188 (605)
T 1m9s_A          188 S  188 (605)
T ss_dssp             C
T ss_pred             C
Confidence            4

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.73  E-value=1.6e-18  Score=205.53  Aligned_cols=193  Identities=19%  Similarity=0.209  Sum_probs=110.3

Q ss_pred             EcCCCcccccCCCccccccCccEEeccCCccccCCchhhcCCCCcCeeccccccceeecchhHHhcCCCCCEEEccCCcc
Q 048351          478 NLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRF  557 (850)
Q Consensus       478 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l  557 (850)
                      +++.|.+. ..|..+..++.|+.|+|++|++. .+|..+..+++|++|+|++|.++ .+|..+. .+++|++|+|++|.|
T Consensus       207 ~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~-~l~~L~~L~Ls~N~l  282 (727)
T 4b8c_D          207 DDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIK-NLSNLRVLDLSHNRL  282 (727)
T ss_dssp             ----------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGG-GGTTCCEEECTTSCC
T ss_pred             ccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhh-CCCCCCEEeCcCCcC
Confidence            33444444 45666777788888888888877 56666667888888888888887 7887776 688888888888888


Q ss_pred             ccccCcCcCCCCCcceeecccccCcccCCccccCcccCccccccCccccccccccCCCcccCccceEeeEEEEEecCccc
Q 048351          558 YGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEY  637 (850)
Q Consensus       558 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  637 (850)
                      + .+|..|+.+++|++|+|++|.|+ .+|..|+++++|                                          
T Consensus       283 ~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L------------------------------------------  318 (727)
T 4b8c_D          283 T-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNL------------------------------------------  318 (727)
T ss_dssp             S-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTC------------------------------------------
T ss_pred             C-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCc------------------------------------------
Confidence            8 66888888888888888888886 667666666555                                          


Q ss_pred             ccccccccccEEEcCCCCCCCCChhhhhcccc-CCeEecCCCcCccCCCccccccCCCCeeeCCCC--------cCcccC
Q 048351          638 EYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVG-LIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRN--------QFSGGI  708 (850)
Q Consensus       638 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~-L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N--------~l~~~~  708 (850)
                               +.|+|++|+|++.+|..+..+.. +..|+|++|.+++.+|.      .|+.|++++|        .+.+..
T Consensus       319 ---------~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n~~~~~~~~~l~~~~  383 (727)
T 4b8c_D          319 ---------QFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTDGEPQREYDSLQQST  383 (727)
T ss_dssp             ---------CCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C-----------------------
T ss_pred             ---------cEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeEeecccccccccCCccccc
Confidence                     77888888888888887766532 23478888888888775      4456667766        455555


Q ss_pred             cccccCCCCCCEEEcCCCcCcccCC
Q 048351          709 PSSLSQVNRLSVMDLSHNNLSGKIP  733 (850)
Q Consensus       709 p~~l~~l~~L~~L~ls~N~l~g~iP  733 (850)
                      +..+..+..+....+++|-+.+...
T Consensus       384 ~~~~~~l~~~~~~~ls~Nil~~~~~  408 (727)
T 4b8c_D          384 EHLATDLAKRTFTVLSYNTLCQHYA  408 (727)
T ss_dssp             ------------------CCCGGGC
T ss_pred             cchhhcccccceeeeeccccccccC
Confidence            5666677777888888888865433

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.73  E-value=4.7e-18  Score=167.32  Aligned_cols=155  Identities=21%  Similarity=0.291  Sum_probs=118.5

Q ss_pred             CEEEccCCccccccCcCcCCCCCcceeecccccCcccCCc-cccCcccCccccccCccccccccccCCCcccCccceEee
Q 048351          548 VVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPK-CFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFD  626 (850)
Q Consensus       548 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  626 (850)
                      +++++++|.++ .+|..+..  ++++|++++|++++..+. .+..+++|                               
T Consensus        11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L-------------------------------   56 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHL-------------------------------   56 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTC-------------------------------
T ss_pred             CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCC-------------------------------
Confidence            57777777775 56655533  788888888888765553 24444444                               


Q ss_pred             EEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCCCccccccCCCCeeeCCCCcCcc
Q 048351          627 IVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSG  706 (850)
Q Consensus       627 ~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~  706 (850)
                                          ++|+|++|++++..|..|.++++|++|+|++|++++..|..|.++++|++|+|++|++++
T Consensus        57 --------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  116 (192)
T 1w8a_A           57 --------------------VKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISC  116 (192)
T ss_dssp             --------------------CEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCE
T ss_pred             --------------------CEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCe
Confidence                                889999999998889999999999999999999999888889999999999999999999


Q ss_pred             cCcccccCCCCCCEEEcCCCcCcccCCCCCcCCCcCccccCCCCCCCCCC
Q 048351          707 GIPSSLSQVNRLSVMDLSHNNLSGKIPTGTQLQSFNASVYDGNPELCGLP  756 (850)
Q Consensus       707 ~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~lc~~~  756 (850)
                      .+|..+..+++|++|++++|+++|..|.......+....+.++...|+.|
T Consensus       117 ~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P  166 (192)
T 1w8a_A          117 VMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAP  166 (192)
T ss_dssp             ECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSS
T ss_pred             eCHHHhhcCCCCCEEEeCCCCccCcCcchHHHHHHHHcCCCCCCCCCCCC
Confidence            99999999999999999999999876643221122223345555555443

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.72  E-value=2.2e-17  Score=163.40  Aligned_cols=154  Identities=14%  Similarity=0.212  Sum_probs=101.6

Q ss_pred             cCCCCcCeeccccccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccCcccCCccccCcccCc
Q 048351          517 KNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMT  596 (850)
Q Consensus       517 ~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~  596 (850)
                      ..+++|+.|++++|.++ .+| .+. .+++|++|++++|.++.  +..+..+++|++|++++|++++..|..+..+++| 
T Consensus        41 ~~l~~L~~L~l~~n~i~-~l~-~l~-~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L-  114 (197)
T 4ezg_A           41 AQMNSLTYITLANINVT-DLT-GIE-YAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSL-  114 (197)
T ss_dssp             HHHHTCCEEEEESSCCS-CCT-TGG-GCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTC-
T ss_pred             hhcCCccEEeccCCCcc-ChH-HHh-cCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCC-
Confidence            34455556666666655 455 333 46666666666665542  2356667777777777777776556555554444 


Q ss_pred             cccccCccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecC
Q 048351          597 QERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLS  676 (850)
Q Consensus       597 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls  676 (850)
                                                                        ++|+|++|++++..|..++.+++|+.|+++
T Consensus       115 --------------------------------------------------~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~  144 (197)
T 4ezg_A          115 --------------------------------------------------TLLDISHSAHDDSILTKINTLPKVNSIDLS  144 (197)
T ss_dssp             --------------------------------------------------CEEECCSSBCBGGGHHHHTTCSSCCEEECC
T ss_pred             --------------------------------------------------CEEEecCCccCcHhHHHHhhCCCCCEEEcc
Confidence                                                              677777777777777778888888888888


Q ss_pred             CCc-CccCCCccccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCCcCcc
Q 048351          677 RNN-LTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSG  730 (850)
Q Consensus       677 ~N~-l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g  730 (850)
                      +|+ ++ .+| .+..+++|+.|++++|++++. + .+..+++|++|++++|++.+
T Consensus       145 ~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          145 YNGAIT-DIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             SCTBCC-CCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC----
T ss_pred             CCCCcc-ccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCcccCC
Confidence            887 55 444 577888888888888888753 3 67778888888888888753

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.71  E-value=9.8e-18  Score=173.84  Aligned_cols=171  Identities=19%  Similarity=0.280  Sum_probs=119.8

Q ss_pred             cccCccEEeccCCccccCCchhhcCCCCcCeeccccccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcce
Q 048351          494 YLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQI  573 (850)
Q Consensus       494 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~  573 (850)
                      .+.++..+++++|.+++ ++ .+..+++|++|++++|.++ .+| .+. .+++|++|++++|++++..+  +..+++|++
T Consensus        17 ~l~~l~~l~l~~~~i~~-~~-~~~~l~~L~~L~l~~n~i~-~l~-~l~-~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~   89 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVTD-LV-SQKELSGVQNFNGDNSNIQ-SLA-GMQ-FFTNLKELHLSHNQISDLSP--LKDLTKLEE   89 (263)
T ss_dssp             HHHHHHHHHHTCSCTTS-EE-CHHHHTTCSEEECTTSCCC-CCT-TGG-GCTTCCEEECCSSCCCCCGG--GTTCSSCCE
T ss_pred             HHHHHHHHHhcCCCccc-cc-chhhcCcCcEEECcCCCcc-cch-HHh-hCCCCCEEECCCCccCCChh--hccCCCCCE
Confidence            35556666667666663 23 4566677777777777776 565 343 57777777777777775444  677777777


Q ss_pred             eecccccCcccCCccccCcccCccccccCccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCC
Q 048351          574 LDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSS  653 (850)
Q Consensus       574 L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~  653 (850)
                      |++++|++++. |....                                                     +.|+.|+|++
T Consensus        90 L~L~~N~l~~l-~~~~~-----------------------------------------------------~~L~~L~L~~  115 (263)
T 1xeu_A           90 LSVNRNRLKNL-NGIPS-----------------------------------------------------ACLSRLFLDN  115 (263)
T ss_dssp             EECCSSCCSCC-TTCCC-----------------------------------------------------SSCCEEECCS
T ss_pred             EECCCCccCCc-Ccccc-----------------------------------------------------CcccEEEccC
Confidence            77777777642 21110                                                     2237788888


Q ss_pred             CCCCCCChhhhhccccCCeEecCCCcCccCCCccccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCCcCccc
Q 048351          654 NKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGK  731 (850)
Q Consensus       654 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~  731 (850)
                      |++++. + .+..+++|+.|+|++|++++. + .++.+++|+.|++++|++++.  ..+..+++|++|++++|++++.
T Consensus       116 N~l~~~-~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          116 NELRDT-D-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             SCCSBS-G-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             CccCCC-h-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence            888753 3 577888888888888888864 3 688888888888888888876  6678888888888888888754

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.71  E-value=3.4e-17  Score=162.05  Aligned_cols=155  Identities=19%  Similarity=0.247  Sum_probs=107.0

Q ss_pred             ccccCccEEeccCCccccCCchhhcCCCCcCeeccccccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcc
Q 048351          493 GYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQ  572 (850)
Q Consensus       493 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~  572 (850)
                      ..+++|+.|++++|.++ .+| .+..+++|++|++++|.++ .++ .+. .+++|++|++++|.+++..+..+..+++|+
T Consensus        41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~~~-~l~-~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~  115 (197)
T 4ezg_A           41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-NYN-PIS-GLSNLERLRIMGKDVTSDKIPNLSGLTSLT  115 (197)
T ss_dssp             HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-CCG-GGT-TCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred             hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-cch-hhh-cCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence            34555566666666555 334 4556666666666666554 333 333 577788888888888777777788888888


Q ss_pred             eeecccccCcccCCccccCcccCccccccCccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcC
Q 048351          573 ILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLS  652 (850)
Q Consensus       573 ~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls  652 (850)
                      +|++++|++++..|..+..+++|                                                   +.|+++
T Consensus       116 ~L~Ls~n~i~~~~~~~l~~l~~L---------------------------------------------------~~L~L~  144 (197)
T 4ezg_A          116 LLDISHSAHDDSILTKINTLPKV---------------------------------------------------NSIDLS  144 (197)
T ss_dssp             EEECCSSBCBGGGHHHHTTCSSC---------------------------------------------------CEEECC
T ss_pred             EEEecCCccCcHhHHHHhhCCCC---------------------------------------------------CEEEcc
Confidence            88888888877666666555544                                                   788888


Q ss_pred             CCCCCCCChhhhhccccCCeEecCCCcCccCCCccccccCCCCeeeCCCCcCcc
Q 048351          653 SNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSG  706 (850)
Q Consensus       653 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~  706 (850)
                      +|++.+.+| .+..+++|+.|++++|++++. + .+..+++|+.|++++|++.+
T Consensus       145 ~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          145 YNGAITDIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             SCTBCCCCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC----
T ss_pred             CCCCccccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCcccCC
Confidence            887333555 688888999999999998864 3 78888999999999998864

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.71  E-value=5.9e-19  Score=202.77  Aligned_cols=197  Identities=16%  Similarity=0.150  Sum_probs=138.5

Q ss_pred             ccccCccEEeccCCccccCCchhhcCCCCcCeeccccccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcc
Q 048351          493 GYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQ  572 (850)
Q Consensus       493 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~  572 (850)
                      ..+++|+.|+|++|+++ .+|..++++++|+.|++++|.....+|..+.            .+.+.+.+|..+..+++|+
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~------------~~~~~~~~~~~l~~l~~L~  412 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMR------------ALDPLLYEKETLQYFSTLK  412 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH------------HHCTGGGHHHHHHHHHHHH
T ss_pred             ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHH------------hcccccCCHHHHHHHHhcc
Confidence            45677888888888887 6788888888888888876652212221111            1123345555666666666


Q ss_pred             eee-cccccCcccCCccccCcccCccccccCccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEc
Q 048351          573 ILD-LSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDL  651 (850)
Q Consensus       573 ~L~-Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L  651 (850)
                      .|+ ++.|.+..        ++.+   ....+.                                ... -....|+.|+|
T Consensus       413 ~L~~l~~n~~~~--------L~~l---~l~~n~--------------------------------i~~-l~~~~L~~L~L  448 (567)
T 1dce_A          413 AVDPMRAAYLDD--------LRSK---FLLENS--------------------------------VLK-MEYADVRVLHL  448 (567)
T ss_dssp             HHCGGGHHHHHH--------HHHH---HHHHHH--------------------------------HHH-HHHTTCSEEEC
T ss_pred             cCcchhhcccch--------hhhh---hhhccc--------------------------------ccc-cCccCceEEEe
Confidence            666 55554431        1110   000000                                000 00012589999


Q ss_pred             CCCCCCCCChhhhhccccCCeEecCCCcCccCCCccccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCCcCccc
Q 048351          652 SSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGK  731 (850)
Q Consensus       652 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~  731 (850)
                      ++|+|++ +|. ++.+++|+.|+|++|+|+ .+|..++++++|+.|+|++|+|++ +| .+..+++|++|++++|++++.
T Consensus       449 s~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~  523 (567)
T 1dce_A          449 AHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQS  523 (567)
T ss_dssp             TTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSS
T ss_pred             cCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCC
Confidence            9999996 676 999999999999999999 789999999999999999999997 67 899999999999999999988


Q ss_pred             C-CCC-CcCCCcCccccCCCCC
Q 048351          732 I-PTG-TQLQSFNASVYDGNPE  751 (850)
Q Consensus       732 i-P~~-~~~~~~~~~~~~gN~~  751 (850)
                      + |.. ..+..+....+.+|+.
T Consensus       524 ~~p~~l~~l~~L~~L~L~~N~l  545 (567)
T 1dce_A          524 AAIQPLVSCPRLVLLNLQGNSL  545 (567)
T ss_dssp             STTGGGGGCTTCCEEECTTSGG
T ss_pred             CCcHHHhcCCCCCEEEecCCcC
Confidence            6 643 4566677777888864

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.70  E-value=2.6e-18  Score=203.70  Aligned_cols=134  Identities=24%  Similarity=0.328  Sum_probs=87.9

Q ss_pred             EEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCCCccccccCccEEeccCCccccCCchhhcCCCCcCeecccccc
Q 048351          452 YLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENS  531 (850)
Q Consensus       452 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~  531 (850)
                      .++++.|.+. ..++.+..++.|+.|+|++|.+. .+|..+..+++|++|+|++|+++ .+|..|.++++|++|+|++|+
T Consensus       205 ~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~  281 (727)
T 4b8c_D          205 EDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNR  281 (727)
T ss_dssp             ------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSC
T ss_pred             Ccccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCc
Confidence            3444445544 45666777777777777777777 56666667777777777777777 677777777777888888777


Q ss_pred             ceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccCcccCCccccC
Q 048351          532 ISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNN  591 (850)
Q Consensus       532 l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~  591 (850)
                      |+ .+|..+. .+++|++|+|++|.++ .+|..|+.+++|++|+|++|+|++.+|..+..
T Consensus       282 l~-~lp~~~~-~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~  338 (727)
T 4b8c_D          282 LT-SLPAELG-SCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTE  338 (727)
T ss_dssp             CS-SCCSSGG-GGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHH
T ss_pred             CC-ccChhhc-CCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhh
Confidence            77 7777766 5777888888888776 66767777778888888888877777765543

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.69  E-value=3.2e-17  Score=161.33  Aligned_cols=132  Identities=23%  Similarity=0.291  Sum_probs=93.0

Q ss_pred             CeeccccccceeecchhHHhcCCCCCEEEccCCccccccCc-CcCCCCCcceeecccccCcccCCccccCcccCcccccc
Q 048351          523 RVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPF-QLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSY  601 (850)
Q Consensus       523 ~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~  601 (850)
                      +.+++++|+++ .+|..+.   .++++|++++|.+++..+. .+..+++|++|+|++|+|++..|..|.++++|      
T Consensus        11 ~~l~~s~~~l~-~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L------   80 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHI------   80 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTC------
T ss_pred             CEEEcCCCCcC-cCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccC------
Confidence            45566666664 5665443   2667777777777655543 36677777777777777776666666555544      


Q ss_pred             CccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCc
Q 048351          602 NSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLT  681 (850)
Q Consensus       602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  681 (850)
                                                                   ++|+|++|++++..|..|.++++|+.|+|++|+++
T Consensus        81 ---------------------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  115 (192)
T 1w8a_A           81 ---------------------------------------------QELQLGENKIKEISNKMFLGLHQLKTLNLYDNQIS  115 (192)
T ss_dssp             ---------------------------------------------CEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCC
T ss_pred             ---------------------------------------------CEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCC
Confidence                                                         67777777777777777777888888888888888


Q ss_pred             cCCCccccccCCCCeeeCCCCcCcccCc
Q 048351          682 GYITPKIGQLQSLDFLDLSRNQFSGGIP  709 (850)
Q Consensus       682 ~~ip~~l~~l~~L~~L~Ls~N~l~~~~p  709 (850)
                      +.+|..|..+++|++|+|++|.+++..+
T Consensus       116 ~~~~~~~~~l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A          116 CVMPGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             EECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             eeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence            7778888888888888888888876654

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.68  E-value=2.7e-17  Score=170.49  Aligned_cols=169  Identities=20%  Similarity=0.256  Sum_probs=95.1

Q ss_pred             CCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCCCccccccCccEEeccCCccccCCchhhcCCCCcCeecc
Q 048351          448 QNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVAL  527 (850)
Q Consensus       448 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L  527 (850)
                      .+++.+++++|.+++..  .+..+++|++|++++|.++ .++ .+..+++|++|++++|++++..+  +..+        
T Consensus        19 ~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l--------   84 (263)
T 1xeu_A           19 ANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDL--------   84 (263)
T ss_dssp             HHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTC--------
T ss_pred             HHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccC--------
Confidence            34555566666655322  3555566666666666555 233 44555555555555555553222  4444        


Q ss_pred             ccccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccCcccCCccccCcccCccccccCccccc
Q 048351          528 EENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAIT  607 (850)
Q Consensus       528 ~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~  607 (850)
                                       ++|++|++++|++++. |. +.. ++|+.|++++|++++. + .+..+++             
T Consensus        85 -----------------~~L~~L~L~~N~l~~l-~~-~~~-~~L~~L~L~~N~l~~~-~-~l~~l~~-------------  129 (263)
T 1xeu_A           85 -----------------TKLEELSVNRNRLKNL-NG-IPS-ACLSRLFLDNNELRDT-D-SLIHLKN-------------  129 (263)
T ss_dssp             -----------------SSCCEEECCSSCCSCC-TT-CCC-SSCCEEECCSSCCSBS-G-GGTTCTT-------------
T ss_pred             -----------------CCCCEEECCCCccCCc-Cc-ccc-CcccEEEccCCccCCC-h-hhcCccc-------------
Confidence                             4455555555554432 21 112 5566666666666542 1 2322222             


Q ss_pred             cccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCCCcc
Q 048351          608 FSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPK  687 (850)
Q Consensus       608 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~  687 (850)
                                                            |+.|+|++|++++. | .++.+++|+.|+|++|++++.  ..
T Consensus       130 --------------------------------------L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~  167 (263)
T 1xeu_A          130 --------------------------------------LEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GG  167 (263)
T ss_dssp             --------------------------------------CCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TT
T ss_pred             --------------------------------------ccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HH
Confidence                                                  36677777777654 3 567777777777777777765  56


Q ss_pred             ccccCCCCeeeCCCCcCccc
Q 048351          688 IGQLQSLDFLDLSRNQFSGG  707 (850)
Q Consensus       688 l~~l~~L~~L~Ls~N~l~~~  707 (850)
                      +..+++|+.|++++|++++.
T Consensus       168 l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          168 LTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             STTCCCCCEEEEEEEEEECC
T ss_pred             hccCCCCCEEeCCCCcccCC
Confidence            77777777777777777755

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.65  E-value=2e-16  Score=170.06  Aligned_cols=219  Identities=11%  Similarity=0.047  Sum_probs=147.7

Q ss_pred             CCCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCCCccccccCccEEeccCCcc----ccCCchhhcCCCCc
Q 048351          447 GQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNF----SGELPSLLKNFTHL  522 (850)
Q Consensus       447 ~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l----~~~~p~~l~~l~~L  522 (850)
                      +++|+.|+|.+ .++...+.+|.+|++|+.+++++|.+....+.+|.++.++..+.+..+..    ...-...|.++..|
T Consensus       100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L  178 (329)
T 3sb4_A          100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL  178 (329)
T ss_dssp             CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred             cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence            67888888888 77766667788888888888888888767777788777777777665322    22234456666666


Q ss_pred             C-eeccccccceeecchhHHhc---CCCCCEEEccCCccccccCcCcCCCCCcceeecccccCcccCCccccCcccCccc
Q 048351          523 R-VVALEENSISGNIPAWIGES---LLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQE  598 (850)
Q Consensus       523 ~-~L~L~~N~l~~~ip~~~~~~---l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l  598 (850)
                      + .+.+...   +.++..++..   ..+++.+.+.++-...........+++|+.+++++|+++...+.+|.++++|   
T Consensus       179 ~~~i~~~~~---~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L---  252 (329)
T 3sb4_A          179 ETTIQVGAM---GKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYL---  252 (329)
T ss_dssp             EEEEEECTT---CCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTC---
T ss_pred             ceeEEecCC---CcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCC---
Confidence            6 4444332   2444444322   4456666665543221111111236778888888888876555666666655   


Q ss_pred             cccCccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCC-eEecCC
Q 048351          599 RSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLI-GLNLSR  677 (850)
Q Consensus       599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~-~L~Ls~  677 (850)
                                                                      +.|+|++| ++...+..|.++++|+ .+++++
T Consensus       253 ------------------------------------------------~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~  283 (329)
T 3sb4_A          253 ------------------------------------------------LKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA  283 (329)
T ss_dssp             ------------------------------------------------CEEECCTT-CCEECTTTTTTCTTCCEEEEECT
T ss_pred             ------------------------------------------------CEEECCcc-cceehHHHhhCChhccEEEEEcc
Confidence                                                            67778777 6666667788888888 888887


Q ss_pred             CcCccCCCccccccCCCCeeeCCCCcCcccCcccccCCCCCCEEE
Q 048351          678 NNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMD  722 (850)
Q Consensus       678 N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  722 (850)
                       .++.+.+.+|.++++|+.+++++|+++...+..|.++++|+.++
T Consensus       284 -~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          284 -SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             -TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             -cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence             77766677888888888888888888877777888888888775

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.64  E-value=5.5e-16  Score=149.04  Aligned_cols=137  Identities=21%  Similarity=0.214  Sum_probs=114.8

Q ss_pred             CCCCCEEEccCCccc-cccCcCcCCCCCcceeecccccCcccCCccccCcccCccccccCccccccccccCCCcccCccc
Q 048351          544 LLNLVVLDLRSNRFY-GKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVH  622 (850)
Q Consensus       544 l~~L~~L~L~~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~  622 (850)
                      .++|++|++++|.++ +.+|..+..+++|++|++++|.+++.  ..+..+++                            
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~----------------------------   72 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPK----------------------------   72 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSS----------------------------
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCC----------------------------
Confidence            468899999999987 67888888899999999999998854  44444443                            


Q ss_pred             eEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCC-CccccccCCCCeeeCCC
Q 048351          623 IFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYI-TPKIGQLQSLDFLDLSR  701 (850)
Q Consensus       623 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~i-p~~l~~l~~L~~L~Ls~  701 (850)
                                             |+.|+|++|++++.+|..+..+++|+.|+|++|++++.. +..+..+++|+.|++++
T Consensus        73 -----------------------L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~  129 (168)
T 2ell_A           73 -----------------------LKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFN  129 (168)
T ss_dssp             -----------------------CCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCS
T ss_pred             -----------------------CCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeC
Confidence                                   488999999999888888888999999999999999753 27889999999999999


Q ss_pred             CcCcccCc---ccccCCCCCCEEEcCCCcCcccCCC
Q 048351          702 NQFSGGIP---SSLSQVNRLSVMDLSHNNLSGKIPT  734 (850)
Q Consensus       702 N~l~~~~p---~~l~~l~~L~~L~ls~N~l~g~iP~  734 (850)
                      |++++..+   ..+..+++|++||+++|.+. .+|.
T Consensus       130 N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~  164 (168)
T 2ell_A          130 CEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPD  164 (168)
T ss_dssp             SGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred             CcCcchHHHHHHHHHhCccCcEecCCCCChh-hccc
Confidence            99997766   58899999999999999987 4453

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.63  E-value=5.1e-16  Score=152.64  Aligned_cols=129  Identities=23%  Similarity=0.304  Sum_probs=105.5

Q ss_pred             CEEEccCCccccccCcCcCCCCCcceeecccccCcccCCccccCcccCccccccCccccccccccCCCcccCccceEeeE
Q 048351          548 VVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDI  627 (850)
Q Consensus       548 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  627 (850)
                      +++++++|.++ .+|..+.  ++|++|++++|+|+ .+|..|.++++|                                
T Consensus        13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L--------------------------------   56 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHL--------------------------------   56 (193)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTC--------------------------------
T ss_pred             CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCC--------------------------------
Confidence            46777777776 4555442  57888888888887 556555554444                                


Q ss_pred             EEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCCCccccccCCCCeeeCCCCcCccc
Q 048351          628 VLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGG  707 (850)
Q Consensus       628 ~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~  707 (850)
                                         +.|+|++|++++..+..|.++++|+.|+|++|++++..|..|..+++|+.|+|++|++++.
T Consensus        57 -------------------~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~  117 (193)
T 2wfh_A           57 -------------------TLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVV  117 (193)
T ss_dssp             -------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBC
T ss_pred             -------------------CEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCee
Confidence                               7888999999888888899999999999999999988888899999999999999999987


Q ss_pred             CcccccCCCCCCEEEcCCCcCccc
Q 048351          708 IPSSLSQVNRLSVMDLSHNNLSGK  731 (850)
Q Consensus       708 ~p~~l~~l~~L~~L~ls~N~l~g~  731 (850)
                      .+..|..+++|++|++++|++.+.
T Consensus       118 ~~~~~~~l~~L~~L~L~~N~~~C~  141 (193)
T 2wfh_A          118 PEGAFNDLSALSHLAIGANPLYCD  141 (193)
T ss_dssp             CTTTTTTCTTCCEEECCSSCEECS
T ss_pred             ChhhhhcCccccEEEeCCCCeecC
Confidence            777899999999999999999865

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.62  E-value=8.6e-16  Score=144.39  Aligned_cols=129  Identities=19%  Similarity=0.213  Sum_probs=110.0

Q ss_pred             CCCCCEEEccCCccc-cccCcCcCCCCCcceeecccccCcccCCccccCcccCccccccCccccccccccCCCcccCccc
Q 048351          544 LLNLVVLDLRSNRFY-GKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVH  622 (850)
Q Consensus       544 l~~L~~L~L~~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~  622 (850)
                      .++|+.|++++|.++ +.+|..+..+++|++|++++|.+++.  ..+.++++                            
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~----------------------------   65 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNK----------------------------   65 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTT----------------------------
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCC----------------------------
Confidence            467999999999998 78888888999999999999998865  44444433                            


Q ss_pred             eEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccC-CCccccccCCCCeeeCCC
Q 048351          623 IFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGY-ITPKIGQLQSLDFLDLSR  701 (850)
Q Consensus       623 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-ip~~l~~l~~L~~L~Ls~  701 (850)
                                             |++|+|++|++++.+|..++.+++|+.|++++|++++. .+..++.+++|++|++++
T Consensus        66 -----------------------L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~  122 (149)
T 2je0_A           66 -----------------------LKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFN  122 (149)
T ss_dssp             -----------------------CCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTT
T ss_pred             -----------------------CCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcC
Confidence                                   48999999999988999998999999999999999974 347899999999999999


Q ss_pred             CcCcccCc---ccccCCCCCCEEEcCC
Q 048351          702 NQFSGGIP---SSLSQVNRLSVMDLSH  725 (850)
Q Consensus       702 N~l~~~~p---~~l~~l~~L~~L~ls~  725 (850)
                      |++++..+   ..+..+++|++||+++
T Consensus       123 N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A          123 CEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             CGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             CcccchHHHHHHHHHHCCCcccccCCC
Confidence            99998776   6789999999999874

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.61  E-value=3.3e-15  Score=144.92  Aligned_cols=134  Identities=19%  Similarity=0.205  Sum_probs=104.3

Q ss_pred             CCEEEccCCccccccCcCcCCCCCcceeecccccCcccCCccccCcccCccccccCccccccccccCCCcccCccceEee
Q 048351          547 LVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFD  626 (850)
Q Consensus       547 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  626 (850)
                      .+.+++++|+++ .+|..+  .++|+.|++++|++++..+..+..+++|                               
T Consensus         9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L-------------------------------   54 (177)
T 2o6r_A            9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQL-------------------------------   54 (177)
T ss_dssp             TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTC-------------------------------
T ss_pred             CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccc-------------------------------
Confidence            456777777776 344333  3577888888888776555555554444                               


Q ss_pred             EEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCCCccccccCCCCeeeCCCCcCcc
Q 048351          627 IVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSG  706 (850)
Q Consensus       627 ~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~  706 (850)
                                          ++|++++|++++..+..++.+++|+.|+|++|++++..+..+..+++|++|++++|++++
T Consensus        55 --------------------~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~  114 (177)
T 2o6r_A           55 --------------------TKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKS  114 (177)
T ss_dssp             --------------------SEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             --------------------cEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceE
Confidence                                788888888887777778888999999999999998777778889999999999999997


Q ss_pred             cCcccccCCCCCCEEEcCCCcCcccCCC
Q 048351          707 GIPSSLSQVNRLSVMDLSHNNLSGKIPT  734 (850)
Q Consensus       707 ~~p~~l~~l~~L~~L~ls~N~l~g~iP~  734 (850)
                      ..+..+..+++|++|++++|+++|.+|.
T Consensus       115 ~~~~~~~~l~~L~~L~l~~N~~~~~~~~  142 (177)
T 2o6r_A          115 VPDGIFDRLTSLQKIWLHTNPWDCSCPR  142 (177)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred             eCHHHhcCCcccCEEEecCCCeeccCcc
Confidence            7777788899999999999999987663

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.59  E-value=2.6e-15  Score=144.30  Aligned_cols=135  Identities=22%  Similarity=0.194  Sum_probs=114.3

Q ss_pred             CCccEEEccCCCCC-CCCCcccccCCCCCEEEcCCCcccccCCCccccccCccEEeccCCccccCCchhhcCCCCcCeec
Q 048351          448 QNLVYLDLSSNLLS-GKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVA  526 (850)
Q Consensus       448 ~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  526 (850)
                      ++|++|++++|.++ +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|++++.+|..+..+++|++|+
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            67899999999987 67888888899999999999998865  7788899999999999999987888888899999999


Q ss_pred             cccccceeecc--hhHHhcCCCCCEEEccCCccccccC---cCcCCCCCcceeecccccCcccCCc
Q 048351          527 LEENSISGNIP--AWIGESLLNLVVLDLRSNRFYGKIP---FQLCHLADIQILDLSLNNISGNIPK  587 (850)
Q Consensus       527 L~~N~l~~~ip--~~~~~~l~~L~~L~L~~N~l~~~~p---~~l~~l~~L~~L~Ls~N~l~~~~p~  587 (850)
                      +++|+++ .+|  ..+. .+++|++|++++|.+++..+   ..+..+++|++|++++|.+. .+|.
T Consensus       102 Ls~N~l~-~~~~~~~l~-~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~  164 (168)
T 2ell_A          102 LSGNKLK-DISTLEPLK-KLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPD  164 (168)
T ss_dssp             CBSSSCC-SSGGGGGGS-SCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred             ccCCccC-cchhHHHHh-cCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hccc
Confidence            9999998 554  4444 68999999999999986655   47888999999999999886 3443

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.57  E-value=3.4e-15  Score=160.47  Aligned_cols=285  Identities=12%  Similarity=0.048  Sum_probs=194.1

Q ss_pred             CCCCCEEEccCCcCCCCCchhHhhcCcCCCEEecccCcCc--ccCChhhhhhccCCcCEEEccCCcCcccCCCC------
Q 048351          350 QKHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMT--GRFPNYISSMFILESPGIDISSNHLEGPSPSL------  421 (850)
Q Consensus       350 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~--~~~p~~~~~~~~~~L~~L~l~~N~l~~~~~~~------  421 (850)
                      +.+++.|.++++ +....-..+...+++|+.|+|++|++.  ...+..+     +.+..+.+..|.+.......      
T Consensus        24 ~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~-----~~~~~~~~~~~~I~~~aF~~~~~~~~   97 (329)
T 3sb4_A           24 ANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTY-----PNGKFYIYMANFVPAYAFSNVVNGVT   97 (329)
T ss_dssp             HHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSS-----GGGCCEEECTTEECTTTTEEEETTEE
T ss_pred             hCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCccccc-----cccccccccccccCHHHhcccccccc
Confidence            456778888764 221112233333567899999998887  3222222     12233444444433222223      


Q ss_pred             --CCCCcEEEccCCcCcCccccccccCCCCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCcc----cccCCCccccc
Q 048351          422 --PSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNF----SGKIPNSCGYL  495 (850)
Q Consensus       422 --~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l----~~~~p~~~~~l  495 (850)
                        +++|+.+++.+ .++. ++...+..+++|+.+++++|.+....+.+|.++.++..+.+..+..    .......|.++
T Consensus        98 ~g~~~L~~l~L~~-~i~~-I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~  175 (329)
T 3sb4_A           98 KGKQTLEKVILSE-KIKN-IEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEG  175 (329)
T ss_dssp             EECTTCCC-CBCT-TCCE-ECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEES
T ss_pred             cccCCCcEEECCc-cccc-hhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccc
Confidence              68888999988 6654 4445555789999999999999878888999988888888776432    22334456677


Q ss_pred             cCcc-EEeccCCccccCCchhh----cCCCCcCeeccccccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCC
Q 048351          496 QKML-TLSLHHNNFSGELPSLL----KNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLAD  570 (850)
Q Consensus       496 ~~L~-~L~Ls~N~l~~~~p~~l----~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~  570 (850)
                      ..|+ .+.+....   .++..+    ....+++.+.+.++-.. .-...+...+++|+.+++++|+++...+.+|.++++
T Consensus       176 ~~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~  251 (329)
T 3sb4_A          176 EPLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKY  251 (329)
T ss_dssp             CCCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTT
T ss_pred             cccceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCC
Confidence            7777 55554432   233222    13456666666654322 222233334889999999999999777788999999


Q ss_pred             cceeecccccCcccCCccccCcccCccccccCccccccccccCCCcccCccceEeeEEEEEecCccccccccccccc-EE
Q 048351          571 IQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVK-SV  649 (850)
Q Consensus       571 L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~-~L  649 (850)
                      |+.+++.+| ++...+.+|.++++|                                                   + .+
T Consensus       252 L~~l~l~~n-i~~I~~~aF~~~~~L---------------------------------------------------~~~l  279 (329)
T 3sb4_A          252 LLKIKLPHN-LKTIGQRVFSNCGRL---------------------------------------------------AGTL  279 (329)
T ss_dssp             CCEEECCTT-CCEECTTTTTTCTTC---------------------------------------------------CEEE
T ss_pred             CCEEECCcc-cceehHHHhhCChhc---------------------------------------------------cEEE
Confidence            999999998 776666777777666                                                   6 78


Q ss_pred             EcCCCCCCCCChhhhhccccCCeEecCCCcCccCCCccccccCCCCeeeC
Q 048351          650 DLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDL  699 (850)
Q Consensus       650 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~L  699 (850)
                      ++.+ +++...+..|.++++|+.+++++|+++...+..|.++++|+.++.
T Consensus       280 ~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          280 ELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             EECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             EEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence            8877 777677789999999999999999999888889999999998864

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.56  E-value=5.1e-15  Score=139.10  Aligned_cols=127  Identities=24%  Similarity=0.216  Sum_probs=106.8

Q ss_pred             CCccEEEccCCCCC-CCCCcccccCCCCCEEEcCCCcccccCCCccccccCccEEeccCCccccCCchhhcCCCCcCeec
Q 048351          448 QNLVYLDLSSNLLS-GKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVA  526 (850)
Q Consensus       448 ~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  526 (850)
                      ++|+.|++++|.++ +.+|..+..+++|++|++++|.+++.  ..++.+++|++|++++|++++.+|..+..+++|++|+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            57889999999987 77888888899999999999999865  6788889999999999999877888888899999999


Q ss_pred             cccccceeecc--hhHHhcCCCCCEEEccCCccccccC---cCcCCCCCcceeeccc
Q 048351          527 LEENSISGNIP--AWIGESLLNLVVLDLRSNRFYGKIP---FQLCHLADIQILDLSL  578 (850)
Q Consensus       527 L~~N~l~~~ip--~~~~~~l~~L~~L~L~~N~l~~~~p---~~l~~l~~L~~L~Ls~  578 (850)
                      +++|++++ +|  ..+. .+++|++|++++|.+++..+   ..+..+++|+.||+++
T Consensus        95 ls~N~i~~-~~~~~~~~-~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           95 LSGNKIKD-LSTIEPLK-KLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             CTTSCCCS-HHHHGGGG-GCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             CCCCcCCC-hHHHHHHh-hCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            99999884 43  5555 68899999999999987665   4678888999998864

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.56  E-value=1e-14  Score=143.38  Aligned_cols=129  Identities=26%  Similarity=0.318  Sum_probs=98.4

Q ss_pred             CeeccccccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccCcccCCccccCcccCccccccC
Q 048351          523 RVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYN  602 (850)
Q Consensus       523 ~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~  602 (850)
                      +.+++++|.++ .+|..+   .++|++|++++|.++ .+|..+..+++|++|+|++|+|++..+..|.++++|       
T Consensus        13 ~~l~~~~~~l~-~ip~~~---~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L-------   80 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGI---PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQL-------   80 (193)
T ss_dssp             TEEECTTSCCS-SCCSCC---CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTC-------
T ss_pred             CEEEcCCCCCC-cCCCCC---CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCC-------
Confidence            35666666665 666543   246777777777776 566777777888888888888877666666655555       


Q ss_pred             ccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCcc
Q 048351          603 SSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTG  682 (850)
Q Consensus       603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  682 (850)
                                                                  ++|+|++|++++..|..|..+++|+.|+|++|++++
T Consensus        81 --------------------------------------------~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~  116 (193)
T 2wfh_A           81 --------------------------------------------LTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISV  116 (193)
T ss_dssp             --------------------------------------------CEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCB
T ss_pred             --------------------------------------------CEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCe
Confidence                                                        778888888888888888888899999999999987


Q ss_pred             CCCccccccCCCCeeeCCCCcCccc
Q 048351          683 YITPKIGQLQSLDFLDLSRNQFSGG  707 (850)
Q Consensus       683 ~ip~~l~~l~~L~~L~Ls~N~l~~~  707 (850)
                      ..+..|..+++|+.|+|++|.+...
T Consensus       117 ~~~~~~~~l~~L~~L~L~~N~~~C~  141 (193)
T 2wfh_A          117 VPEGAFNDLSALSHLAIGANPLYCD  141 (193)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCEECS
T ss_pred             eChhhhhcCccccEEEeCCCCeecC
Confidence            7667788899999999999988753

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.56  E-value=1.4e-14  Score=140.40  Aligned_cols=133  Identities=23%  Similarity=0.222  Sum_probs=103.5

Q ss_pred             cCeeccccccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccCcccCCccccCcccCcccccc
Q 048351          522 LRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSY  601 (850)
Q Consensus       522 L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~  601 (850)
                      .+.+++++|+++ .+|..+   .++|++|++++|++++..+..+..+++|++|++++|++++..+..+.++++|      
T Consensus         9 ~~~l~~~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L------   78 (177)
T 2o6r_A            9 GTEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKL------   78 (177)
T ss_dssp             TTEEECCSSCCS-SCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTC------
T ss_pred             CCEEEecCCCCc-cCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCcc------
Confidence            356666667666 566543   3578888888888876666667888888888888888886655555555544      


Q ss_pred             CccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCc
Q 048351          602 NSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLT  681 (850)
Q Consensus       602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  681 (850)
                                                                   +.|+|++|++++..+..+..+++|+.|+|++|+++
T Consensus        79 ---------------------------------------------~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  113 (177)
T 2o6r_A           79 ---------------------------------------------TILYLHENKLQSLPNGVFDKLTQLKELALDTNQLK  113 (177)
T ss_dssp             ---------------------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             ---------------------------------------------CEEECCCCCccccCHHHhhCCcccCEEECcCCcce
Confidence                                                         78899999998777777888999999999999999


Q ss_pred             cCCCccccccCCCCeeeCCCCcCcccCc
Q 048351          682 GYITPKIGQLQSLDFLDLSRNQFSGGIP  709 (850)
Q Consensus       682 ~~ip~~l~~l~~L~~L~Ls~N~l~~~~p  709 (850)
                      +..+..+..+++|++|++++|.+++..|
T Consensus       114 ~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A          114 SVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             EeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            7766677889999999999999987665

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.52  E-value=3.6e-16  Score=154.75  Aligned_cols=155  Identities=22%  Similarity=0.275  Sum_probs=114.3

Q ss_pred             hcCCCCcCeeccccccceeecch------hHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccCcccCCccc
Q 048351          516 LKNFTHLRVVALEENSISGNIPA------WIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCF  589 (850)
Q Consensus       516 l~~l~~L~~L~L~~N~l~~~ip~------~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~  589 (850)
                      +.....++.++++.+.++|.+|.      .+. .+++|++|++++|.+++ +| .+..+++|++|++++|+++ .+|..+
T Consensus        14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~-~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~   89 (198)
T 1ds9_A           14 FEERKSVVATEAEKVELHGMIPPIEKMDATLS-TLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLD   89 (198)
T ss_dssp             HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHH-HTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHH
T ss_pred             HHhcccccCcchheeEeccccCcHhhhhHHHh-cCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchh
Confidence            44455666667777777666665      565 58888888888888876 56 7788888888888888887 445433


Q ss_pred             cCcccCccccccCccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhcccc
Q 048351          590 NNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVG  669 (850)
Q Consensus       590 ~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~  669 (850)
                      ..++                                                   .|+.|+|++|++++ +| .+..+++
T Consensus        90 ~~~~---------------------------------------------------~L~~L~L~~N~l~~-l~-~~~~l~~  116 (198)
T 1ds9_A           90 AVAD---------------------------------------------------TLEELWISYNQIAS-LS-GIEKLVN  116 (198)
T ss_dssp             HHHH---------------------------------------------------HCSEEEEEEEECCC-HH-HHHHHHH
T ss_pred             hcCC---------------------------------------------------cCCEEECcCCcCCc-CC-ccccCCC
Confidence            3333                                                   34788888888885 45 6888888


Q ss_pred             CCeEecCCCcCccCCC-ccccccCCCCeeeCCCCcCcccCccc----------ccCCCCCCEEEcCCCcCc
Q 048351          670 LIGLNLSRNNLTGYIT-PKIGQLQSLDFLDLSRNQFSGGIPSS----------LSQVNRLSVMDLSHNNLS  729 (850)
Q Consensus       670 L~~L~Ls~N~l~~~ip-~~l~~l~~L~~L~Ls~N~l~~~~p~~----------l~~l~~L~~L~ls~N~l~  729 (850)
                      |+.|++++|++++..+ ..+..+++|++|++++|.+++.+|..          +..+++|++||  +|.++
T Consensus       117 L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred             CCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence            9999999998886432 46888888999999999888776653          77888888887  56554

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.47  E-value=5.7e-14  Score=135.96  Aligned_cols=81  Identities=22%  Similarity=0.290  Sum_probs=57.1

Q ss_pred             cEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCCCc--cccccCCCCeeeCCCCcCcccCcc----cccCCCCCCE
Q 048351          647 KSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITP--KIGQLQSLDFLDLSRNQFSGGIPS----SLSQVNRLSV  720 (850)
Q Consensus       647 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~--~l~~l~~L~~L~Ls~N~l~~~~p~----~l~~l~~L~~  720 (850)
                      +.|+|++|++++..|..++.+++|+.|+|++|+++. +|.  .+..+++|+.|++++|.++ .+|.    .+..+++|++
T Consensus        67 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~  144 (176)
T 1a9n_A           67 KTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRV  144 (176)
T ss_dssp             CEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSE
T ss_pred             CEEECCCCcccccCcchhhcCCCCCEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccce
Confidence            667777777775544555777777777777777753 444  6777777888888888777 3444    3777788888


Q ss_pred             EEcCCCcCc
Q 048351          721 MDLSHNNLS  729 (850)
Q Consensus       721 L~ls~N~l~  729 (850)
                      ||+++|...
T Consensus       145 Ld~~~n~~~  153 (176)
T 1a9n_A          145 LDFQKVKLK  153 (176)
T ss_dssp             ETTEECCHH
T ss_pred             eCCCcCCHH
Confidence            888877665

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.46  E-value=1.2e-12  Score=143.51  Aligned_cols=220  Identities=9%  Similarity=0.059  Sum_probs=150.5

Q ss_pred             CCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCCCccccccCccEEeccCCccccCCchhhcCCCCcCeecc
Q 048351          448 QNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVAL  527 (850)
Q Consensus       448 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L  527 (850)
                      .+|+.+.+.. .++..-+.+|.+|++|+.+++.+|+++......|. +.+|+.+.+.++ ++..-...|.+|++|+.+++
T Consensus       157 ~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l  233 (401)
T 4fdw_A          157 STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEI  233 (401)
T ss_dssp             CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEEC
T ss_pred             CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEec
Confidence            3577787775 56555667788888888888888887755555555 578888888744 66566677888888888888


Q ss_pred             ccccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccCc-----ccCCccccCcccCccccccC
Q 048351          528 EENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNIS-----GNIPKCFNNFTAMTQERSYN  602 (850)
Q Consensus       528 ~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-----~~~p~~~~~l~~L~~l~~~~  602 (850)
                      .+| ++ .|+...|.+ .+|+.+.+ .+.++...+.+|.++++|+.+++.+|.+.     ...+.+|.++++        
T Consensus       234 ~~~-l~-~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~--------  301 (401)
T 4fdw_A          234 PEN-VS-TIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPK--------  301 (401)
T ss_dssp             CTT-CC-EECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTT--------
T ss_pred             CCC-cc-Ccccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCcc--------
Confidence            765 44 677776654 67888888 44566566677788888888888777664     222333443333        


Q ss_pred             ccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCcc
Q 048351          603 SSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTG  682 (850)
Q Consensus       603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  682 (850)
                                                                 |+.++|. +.++..-...|.++++|+.++|..| ++.
T Consensus       302 -------------------------------------------L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~  336 (401)
T 4fdw_A          302 -------------------------------------------LARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQ  336 (401)
T ss_dssp             -------------------------------------------CCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCE
T ss_pred             -------------------------------------------CCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccE
Confidence                                                       3667776 3466555667777788888888554 665


Q ss_pred             CCCccccccCCCCeeeCCCCcCcccCcccccCCC-CCCEEEcCCCcC
Q 048351          683 YITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVN-RLSVMDLSHNNL  728 (850)
Q Consensus       683 ~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~ls~N~l  728 (850)
                      .-+.+|.++ +|+.+++++|.+....+..|.+++ .++.+.+..+.+
T Consensus       337 I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~  382 (401)
T 4fdw_A          337 INFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV  382 (401)
T ss_dssp             ECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred             EcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence            556677777 788888888877766667777764 667777766554

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.46  E-value=1.2e-13  Score=133.61  Aligned_cols=130  Identities=15%  Similarity=0.199  Sum_probs=105.9

Q ss_pred             CCCCccEEEccCCCCCCCCCcccccC-CCCCEEEcCCCcccccCCCccccccCccEEeccCCccccCCchhhcCCCCcCe
Q 048351          446 SGQNLVYLDLSSNLLSGKLPDCWLQF-NMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRV  524 (850)
Q Consensus       446 ~~~~L~~L~Ls~n~l~~~~p~~~~~l-~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  524 (850)
                      .+.+|++|++++|.++. +|. +..+ ++|++|++++|.+++.  ..+..+++|++|++++|++++..+..+..+++|++
T Consensus        17 ~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   92 (176)
T 1a9n_A           17 NAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE   92 (176)
T ss_dssp             CTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred             CcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence            34788999999999884 454 4444 4899999999999865  67888999999999999998665566688999999


Q ss_pred             eccccccceeecch--hHHhcCCCCCEEEccCCccccccCcC----cCCCCCcceeecccccCc
Q 048351          525 VALEENSISGNIPA--WIGESLLNLVVLDLRSNRFYGKIPFQ----LCHLADIQILDLSLNNIS  582 (850)
Q Consensus       525 L~L~~N~l~~~ip~--~~~~~l~~L~~L~L~~N~l~~~~p~~----l~~l~~L~~L~Ls~N~l~  582 (850)
                      |++++|+++ .+|.  .+. .+++|++|++++|.++ .+|..    +..+++|+.||+++|.+.
T Consensus        93 L~L~~N~i~-~~~~~~~l~-~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           93 LILTNNSLV-ELGDLDPLA-SLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             EECCSCCCC-CGGGGGGGG-GCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             EECCCCcCC-cchhhHhhh-cCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            999999996 7776  555 6899999999999998 45553    788999999999999875

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.46  E-value=2e-13  Score=131.12  Aligned_cols=88  Identities=22%  Similarity=0.205  Sum_probs=80.6

Q ss_pred             ccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCCCccccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCC
Q 048351          646 VKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSH  725 (850)
Q Consensus       646 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~  725 (850)
                      ++.|+|++|+|++..|..|.++++|+.|+|++|+|++..+..|..+++|++|+|++|+|++..+..|..+++|++|++++
T Consensus        32 l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~  111 (170)
T 3g39_A           32 TQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLN  111 (170)
T ss_dssp             CSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCC
Confidence            37899999999988899999999999999999999988777889999999999999999988888899999999999999


Q ss_pred             CcCcccCC
Q 048351          726 NNLSGKIP  733 (850)
Q Consensus       726 N~l~g~iP  733 (850)
                      |++++..+
T Consensus       112 N~~~c~c~  119 (170)
T 3g39_A          112 NPWDCACS  119 (170)
T ss_dssp             SCBCTTBG
T ss_pred             CCCCCCch
Confidence            99997755

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.45  E-value=1.1e-15  Score=151.25  Aligned_cols=132  Identities=23%  Similarity=0.236  Sum_probs=79.2

Q ss_pred             hhcCCCCcCeeccccccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccCcccCCccccCccc
Q 048351          515 LLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTA  594 (850)
Q Consensus       515 ~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  594 (850)
                      .+..+++|++|++++|+++ .+| .+. .+++|++|++++|.++ .+|..+..+++|++|++++|++++ +| .+..+  
T Consensus        43 ~~~~l~~L~~L~ls~n~l~-~l~-~~~-~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l--  114 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIE-KIS-SLS-GMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKL--  114 (198)
T ss_dssp             HHHHTTTCSEEECSEEEES-CCC-CHH-HHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHH--
T ss_pred             HHhcCCCCCEEECCCCCCc-ccc-ccc-cCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccC--
Confidence            5555666666666666665 355 333 4566666666666665 445555555666666666666654 22 22222  


Q ss_pred             CccccccCccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCCh-hhhhccccCCeE
Q 048351          595 MTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVP-EEIMDLVGLIGL  673 (850)
Q Consensus       595 L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L  673 (850)
                                                                       +.|+.|++++|++++..+ ..+..+++|+.|
T Consensus       115 -------------------------------------------------~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L  145 (198)
T 1ds9_A          115 -------------------------------------------------VNLRVLYMSNNKITNWGEIDKLAALDKLEDL  145 (198)
T ss_dssp             -------------------------------------------------HHSSEEEESEEECCCHHHHHHHTTTTTCSEE
T ss_pred             -------------------------------------------------CCCCEEECCCCcCCchhHHHHHhcCCCCCEE
Confidence                                                             223667777777764322 466777777777


Q ss_pred             ecCCCcCccCCCcc----------ccccCCCCeeeCCCCcCc
Q 048351          674 NLSRNNLTGYITPK----------IGQLQSLDFLDLSRNQFS  705 (850)
Q Consensus       674 ~Ls~N~l~~~ip~~----------l~~l~~L~~L~Ls~N~l~  705 (850)
                      ++++|.+++.+|..          +..+++|+.||  +|.++
T Consensus       146 ~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          146 LLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             EECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred             EecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence            77777777665542          67777888776  56655

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.42  E-value=5.9e-13  Score=128.22  Aligned_cols=88  Identities=23%  Similarity=0.239  Sum_probs=78.0

Q ss_pred             ccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCCCccccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCC
Q 048351          646 VKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSH  725 (850)
Q Consensus       646 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~  725 (850)
                      |+.|+|++|+|++..|..|+++++|+.|+|++|+|++..+..|.++++|++|||++|+|++..+..|..+++|++|++++
T Consensus        35 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~  114 (174)
T 2r9u_A           35 KQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYN  114 (174)
T ss_dssp             CSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCS
T ss_pred             CcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCC
Confidence            37899999999988899999999999999999999987777788999999999999999987777799999999999999


Q ss_pred             CcCcccCC
Q 048351          726 NNLSGKIP  733 (850)
Q Consensus       726 N~l~g~iP  733 (850)
                      |++.+..+
T Consensus       115 N~~~c~~~  122 (174)
T 2r9u_A          115 NPWDCECR  122 (174)
T ss_dssp             SCBCTTBG
T ss_pred             CCcccccc
Confidence            99986543

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.41  E-value=3.8e-12  Score=139.67  Aligned_cols=218  Identities=10%  Similarity=0.066  Sum_probs=134.9

Q ss_pred             CccEEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCCCccccccCccEEeccCCccccCCchhhcCCCCcCeeccc
Q 048351          449 NLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALE  528 (850)
Q Consensus       449 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~  528 (850)
                      +|+.+.+..+ ++..-..+|.++ +|+.+.+.+ .+...-+.+|.++++|+.+++.+|+++......|. +.+|+.+.+.
T Consensus       136 ~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp  211 (401)
T 4fdw_A          136 QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLP  211 (401)
T ss_dssp             CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECC
T ss_pred             CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeC
Confidence            4666666554 443444455553 466666654 44444445566666666666666666543333443 4566666665


Q ss_pred             cccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccCcccCCccccCcccCccccccCcccccc
Q 048351          529 ENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITF  608 (850)
Q Consensus       529 ~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~  608 (850)
                      ++ ++ .|+...|.++++|+.+++..| ++..-..+|.+ .+|+.+++ .+.++...+.+|.+++               
T Consensus       212 ~~-l~-~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~---------------  271 (401)
T 4fdw_A          212 VT-LK-EIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCP---------------  271 (401)
T ss_dssp             TT-CC-EECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCT---------------
T ss_pred             Cc-hh-eehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCC---------------
Confidence            33 44 555555555566666666553 33333444444 45666655 2334433344444444               


Q ss_pred             ccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCC-----CCChhhhhccccCCeEecCCCcCccC
Q 048351          609 SYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLG-----GEVPEEIMDLVGLIGLNLSRNNLTGY  683 (850)
Q Consensus       609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-----~~~p~~l~~l~~L~~L~Ls~N~l~~~  683 (850)
                                                          +|+.+++.+|.+.     ...+..|.++++|+.++|. +.++..
T Consensus       272 ------------------------------------~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I  314 (401)
T 4fdw_A          272 ------------------------------------ELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRIL  314 (401)
T ss_dssp             ------------------------------------TCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEE
T ss_pred             ------------------------------------CCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEE
Confidence                                                4477777776654     3556788889999999998 457766


Q ss_pred             CCccccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCCcCc
Q 048351          684 ITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLS  729 (850)
Q Consensus       684 ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~  729 (850)
                      ....|.++++|+.++|..| ++...+..|.++ +|+.+++++|.+.
T Consensus       315 ~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~  358 (401)
T 4fdw_A          315 GQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPP  358 (401)
T ss_dssp             CTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCC
T ss_pred             hhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCc
Confidence            7778999999999999655 777777889988 8999999988664

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.39  E-value=1.3e-12  Score=125.25  Aligned_cols=109  Identities=23%  Similarity=0.265  Sum_probs=87.0

Q ss_pred             CCEEEccCCccccccCcCcCCCCCcceeecccccCcccCCccccCcccCccccccCccccccccccCCCcccCccceEee
Q 048351          547 LVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFD  626 (850)
Q Consensus       547 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  626 (850)
                      .+++++++|.++ .+|..+  .++|++|+|++|+|++..|..|.++++|                               
T Consensus        11 ~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L-------------------------------   56 (170)
T 3g39_A           11 GTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQL-------------------------------   56 (170)
T ss_dssp             TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTC-------------------------------
T ss_pred             CCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccC-------------------------------
Confidence            467788888777 356554  3678888888888887777777666655                               


Q ss_pred             EEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCCCccccccCCCCeeeCCCCcCcc
Q 048351          627 IVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSG  706 (850)
Q Consensus       627 ~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~  706 (850)
                                          ++|+|++|+|++..+..|..+++|+.|+|++|+|++..+..|..+++|+.|+|++|.++.
T Consensus        57 --------------------~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  116 (170)
T 3g39_A           57 --------------------TRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDC  116 (170)
T ss_dssp             --------------------SEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred             --------------------CEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence                                788888888887777778889999999999999998777779999999999999999886


Q ss_pred             cCc
Q 048351          707 GIP  709 (850)
Q Consensus       707 ~~p  709 (850)
                      ..+
T Consensus       117 ~c~  119 (170)
T 3g39_A          117 ACS  119 (170)
T ss_dssp             TBG
T ss_pred             Cch
Confidence            543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.35  E-value=3.2e-12  Score=123.06  Aligned_cols=106  Identities=24%  Similarity=0.294  Sum_probs=81.9

Q ss_pred             CEEEccCCccccccCcCcCCCCCcceeecccccCcccCCccccCcccCccccccCccccccccccCCCcccCccceEeeE
Q 048351          548 VVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDI  627 (850)
Q Consensus       548 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  627 (850)
                      +.+++++|.++ .+|..+.  ++|++|+|++|+|++..|..|.++++|                                
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L--------------------------------   59 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNL--------------------------------   59 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTC--------------------------------
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCC--------------------------------
Confidence            56777777775 5555553  677888888888877777666666555                                


Q ss_pred             EEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCCCccccccCCCCeeeCCCCcCccc
Q 048351          628 VLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGG  707 (850)
Q Consensus       628 ~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~  707 (850)
                                         +.|+|++|+|++..+..|..+++|+.|+|++|+|++..+..|..+++|+.|+|++|.+...
T Consensus        60 -------------------~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~  120 (174)
T 2r9u_A           60 -------------------QQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCE  120 (174)
T ss_dssp             -------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred             -------------------CEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcccc
Confidence                               7788888888876666678888899999999999876666688899999999999988854

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.30  E-value=8.6e-14  Score=151.25  Aligned_cols=66  Identities=23%  Similarity=0.236  Sum_probs=30.9

Q ss_pred             cEEEcCCCCCCCC----ChhhhhccccCCeEecCCCcCccC----CCccccccCCCCeeeCCCCcCcccCcccc
Q 048351          647 KSVDLSSNKLGGE----VPEEIMDLVGLIGLNLSRNNLTGY----ITPKIGQLQSLDFLDLSRNQFSGGIPSSL  712 (850)
Q Consensus       647 ~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~----ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l  712 (850)
                      ++|||++|++++.    ++..+...++|+.|+|++|.+++.    ++..+...++|++|||++|.|+......+
T Consensus       186 ~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L  259 (372)
T 3un9_A          186 THLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVL  259 (372)
T ss_dssp             CEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred             CEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHH
Confidence            4555555555432    233344445555555555555432    22223334555555555555554433333

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.25  E-value=1.7e-10  Score=127.03  Aligned_cols=217  Identities=10%  Similarity=0.095  Sum_probs=126.6

Q ss_pred             CCCCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCCCccccccCccEEeccCCccccCCchhhcCCCCcCee
Q 048351          446 SGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVV  525 (850)
Q Consensus       446 ~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  525 (850)
                      .+++|+.+.+.++. ......+|.++.+|+.+++..+ ++......|.++..|+.+.+..+...  +...+....+|+.+
T Consensus       160 ~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~l~~i  235 (394)
T 4fs7_A          160 TCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY--LGDFALSKTGVKNI  235 (394)
T ss_dssp             TCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTCCCCEE
T ss_pred             ccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE--eehhhcccCCCceE
Confidence            44667777776543 2244556777777777777665 44344556677777777776665443  23334445667777


Q ss_pred             ccccccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccCcccCCccccCcccCccccccCccc
Q 048351          526 ALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSA  605 (850)
Q Consensus       526 ~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~  605 (850)
                      .+..+ ++ .+....+.++..|+.+.+..+... .....|..+..++.+....+.+.   ...|..+.+|          
T Consensus       236 ~ip~~-~~-~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L----------  299 (394)
T 4fs7_A          236 IIPDS-FT-ELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSL----------  299 (394)
T ss_dssp             EECTT-CC-EECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTC----------
T ss_pred             EECCC-ce-ecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeec---cccccccccc----------
Confidence            66543 22 455555556777777777666443 44556777777777766554321   2234344333          


Q ss_pred             cccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCCC
Q 048351          606 ITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYIT  685 (850)
Q Consensus       606 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip  685 (850)
                                                               +.+.+..+ ++..-...|.++++|+.++|..+ ++..-.
T Consensus       300 -----------------------------------------~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~  336 (394)
T 4fs7_A          300 -----------------------------------------TEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGK  336 (394)
T ss_dssp             -----------------------------------------CEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECT
T ss_pred             -----------------------------------------cccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhH
Confidence                                                     44444333 33334455666666777766543 554445


Q ss_pred             ccccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCC
Q 048351          686 PKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHN  726 (850)
Q Consensus       686 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N  726 (850)
                      .+|.++++|+.+++..| ++......|.++++|+.+++..+
T Consensus       337 ~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          337 RSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR  376 (394)
T ss_dssp             TTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred             HhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence            56666777777777655 55555566777777777766543

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.21  E-value=3.3e-10  Score=124.63  Aligned_cols=287  Identities=12%  Similarity=0.022  Sum_probs=179.0

Q ss_pred             ccCCCCCCEEEccCCcCCCCCchhHhhcCcCCCEEecccCcCcccCChhhhhhccCCcCEEEccCCcCcccCCCCCCCCc
Q 048351          347 LQTQKHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSLPSNAF  426 (850)
Q Consensus       347 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~L~  426 (850)
                      |.++.+|+.+.+..+ ++......|.. +.+|+.+++.++ ++......| ..+ ..|+.+.+..+            ++
T Consensus        67 F~~c~~L~~i~lp~~-i~~I~~~aF~~-c~~L~~i~lp~~-l~~I~~~aF-~~c-~~L~~i~~p~~------------l~  129 (394)
T 4fs7_A           67 FQGCRKVTEIKIPST-VREIGEFAFEN-CSKLEIINIPDS-VKMIGRCTF-SGC-YALKSILLPLM------------LK  129 (394)
T ss_dssp             TTTCTTEEEEECCTT-CCEECTTTTTT-CTTCCEECCCTT-CCEECTTTT-TTC-TTCCCCCCCTT------------CC
T ss_pred             hhCCCCceEEEeCCC-ccCcchhHhhC-CCCCcEEEeCCC-ceEccchhh-ccc-ccchhhcccCc------------ee
Confidence            677888888888643 55444455544 357888888654 443333344 111 33333222211            11


Q ss_pred             EEEccCCcCcCccccccccCCCCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCCCccccccCccEEeccCC
Q 048351          427 YIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHN  506 (850)
Q Consensus       427 ~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N  506 (850)
                      .+           ...++..+. +....... .....-..+|.++++|+.+.+.++. .......|.++.+|+.+++..+
T Consensus       130 ~i-----------~~~aF~~~~-~~~~~~~~-~~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~  195 (394)
T 4fs7_A          130 SI-----------GVEAFKGCD-FKEITIPE-GVTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN  195 (394)
T ss_dssp             EE-----------CTTTTTTCC-CSEEECCT-TCCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT
T ss_pred             ee-----------cceeeeccc-ccccccCc-cccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC
Confidence            11           111111222 22222222 1222334678889999999997654 3355567888899999998876


Q ss_pred             ccccCCchhhcCCCCcCeeccccccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccCcccCC
Q 048351          507 NFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIP  586 (850)
Q Consensus       507 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p  586 (850)
                       ++..-...|.++..|+.+.+.++...  +....+ ...+|+.+.+..+ ++......+..+..|+.+.+..+... ...
T Consensus       196 -~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~-~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~  269 (394)
T 4fs7_A          196 -LKIIRDYCFAECILLENMEFPNSLYY--LGDFAL-SKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGG  269 (394)
T ss_dssp             -CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTT-TTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECS
T ss_pred             -ceEeCchhhccccccceeecCCCceE--eehhhc-ccCCCceEEECCC-ceecccccccccccceeEEcCCCcce-eec
Confidence             55455678888999999888877543  444444 4678888888654 33344567788888999888776543 334


Q ss_pred             ccccCcccCccccccCccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhc
Q 048351          587 KCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMD  666 (850)
Q Consensus       587 ~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~  666 (850)
                      ..|.++..+                                                   +.+....+.+   ....|..
T Consensus       270 ~~F~~~~~l---------------------------------------------------~~~~~~~~~i---~~~~F~~  295 (394)
T 4fs7_A          270 SLFYNCSGL---------------------------------------------------KKVIYGSVIV---PEKTFYG  295 (394)
T ss_dssp             CTTTTCTTC---------------------------------------------------CEEEECSSEE---CTTTTTT
T ss_pred             ccccccccc---------------------------------------------------ceeccCceee---ccccccc
Confidence            445544444                                                   3333333322   2345777


Q ss_pred             cccCCeEecCCCcCccCCCccccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCC
Q 048351          667 LVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHN  726 (850)
Q Consensus       667 l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N  726 (850)
                      +.+|+.+.+..+ ++..-..+|.++++|+.+++..+ ++......|.++++|+.+++..|
T Consensus       296 ~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~  353 (394)
T 4fs7_A          296 CSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS  353 (394)
T ss_dssp             CTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT
T ss_pred             cccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc
Confidence            888999998765 66555678889999999999754 77667788999999999988766

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.20  E-value=5.6e-13  Score=144.85  Aligned_cols=45  Identities=16%  Similarity=0.139  Sum_probs=28.1

Q ss_pred             cccEEEcCCCCCCCC----ChhhhhccccCCeEecCCCcCccCCCcccc
Q 048351          645 LVKSVDLSSNKLGGE----VPEEIMDLVGLIGLNLSRNNLTGYITPKIG  689 (850)
Q Consensus       645 ~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~  689 (850)
                      .|+.|||++|.+++.    ++..+...++|++|+|++|.|++.....+.
T Consensus       212 ~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~  260 (372)
T 3un9_A          212 QLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLR  260 (372)
T ss_dssp             CCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHH
T ss_pred             CcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHH
Confidence            346777777777643    334445567788888888887755444443

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.20  E-value=2e-11  Score=132.08  Aligned_cols=88  Identities=17%  Similarity=0.100  Sum_probs=42.3

Q ss_pred             cccccccEEEcCC-CCCCCCChhhhhccccCCeEecCCCcCccCCCccccccCCCCeeeCCCCcCcccCcccccCCCCCC
Q 048351          641 NTLGLVKSVDLSS-NKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLS  719 (850)
Q Consensus       641 ~~l~~L~~L~Ls~-N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~  719 (850)
                      ..+++|+.|+|++ |+|++..|..|+++++|+.|+|++|+|++.+|..|+++++|+.|||++|+|++..+..|..++ |+
T Consensus        28 ~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~  106 (347)
T 2ifg_A           28 PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQ  106 (347)
T ss_dssp             CSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CC
T ss_pred             CCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ce
Confidence            3344445555543 455444444455555555555555555544444445555555555555555444444444333 55


Q ss_pred             EEEcCCCcCc
Q 048351          720 VMDLSHNNLS  729 (850)
Q Consensus       720 ~L~ls~N~l~  729 (850)
                      +|++++|++.
T Consensus       107 ~l~l~~N~~~  116 (347)
T 2ifg_A          107 ELVLSGNPLH  116 (347)
T ss_dssp             EEECCSSCCC
T ss_pred             EEEeeCCCcc
Confidence            5555555444

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.20  E-value=3.2e-11  Score=130.50  Aligned_cols=106  Identities=17%  Similarity=0.122  Sum_probs=92.1

Q ss_pred             CEEEccCC-ccccccCcCcCCCCCcceeeccc-ccCcccCCccccCcccCccccccCccccccccccCCCcccCccceEe
Q 048351          548 VVLDLRSN-RFYGKIPFQLCHLADIQILDLSL-NNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFF  625 (850)
Q Consensus       548 ~~L~L~~N-~l~~~~p~~l~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  625 (850)
                      ..++++++ .++ .+|. +..+++|+.|+|++ |+|++..|..|.++++|                              
T Consensus        11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L------------------------------   58 (347)
T 2ifg_A           11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGEL------------------------------   58 (347)
T ss_dssp             SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCC------------------------------
T ss_pred             CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCC------------------------------
Confidence            35688888 888 4777 99999999999996 99998877777776666                              


Q ss_pred             eEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCCCccccccCCCCeeeCCCCcCc
Q 048351          626 DIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFS  705 (850)
Q Consensus       626 ~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~  705 (850)
                                           +.|+|++|+|++..|..|.++++|+.|+|++|+|++..+..|..++ |+.|+|++|.+.
T Consensus        59 ---------------------~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           59 ---------------------RNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             ---------------------SEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             ---------------------CEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence                                 8999999999999999999999999999999999987777777766 999999999998


Q ss_pred             cc
Q 048351          706 GG  707 (850)
Q Consensus       706 ~~  707 (850)
                      ..
T Consensus       117 c~  118 (347)
T 2ifg_A          117 CS  118 (347)
T ss_dssp             CC
T ss_pred             CC
Confidence            54

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.90  E-value=1.2e-07  Score=104.04  Aligned_cols=63  Identities=10%  Similarity=0.124  Sum_probs=27.5

Q ss_pred             hhhhhccccCCeEecCCCcCccCCCccccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCCc
Q 048351          661 PEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNN  727 (850)
Q Consensus       661 p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~  727 (850)
                      ..+|.++.+|+.+.+..+ ++..-..+|.++++|+.+++.+|....   ..+.....|+.+.+..|.
T Consensus       327 ~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~  389 (394)
T 4gt6_A          327 DDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGS  389 (394)
T ss_dssp             TTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC---------
T ss_pred             HhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCC
Confidence            344555555555555433 443334455666666666665554331   234445555555555443

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.89  E-value=1.1e-07  Score=104.44  Aligned_cols=62  Identities=11%  Similarity=0.209  Sum_probs=28.3

Q ss_pred             hhhccccCCeEecCCCcCccCCCccccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCC
Q 048351          663 EIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHN  726 (850)
Q Consensus       663 ~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N  726 (850)
                      .|.++.+|+.++|..+ ++..-..+|.++++|+.+.+..+ ++......|.++++|+.+++.+|
T Consensus       306 aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~  367 (394)
T 4gt6_A          306 VFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGS  367 (394)
T ss_dssp             TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSC
T ss_pred             eecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCc
Confidence            4444444444444432 33233344555555555555432 33333444555555555555444

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.83  E-value=1.2e-09  Score=117.56  Aligned_cols=83  Identities=18%  Similarity=0.266  Sum_probs=49.8

Q ss_pred             cccccEEEcCCCCCCCCChhhhh---ccccCCeEecCCCcCccC----CCccccccCCCCeeeCCCCcCcccCcccccC-
Q 048351          643 LGLVKSVDLSSNKLGGEVPEEIM---DLVGLIGLNLSRNNLTGY----ITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQ-  714 (850)
Q Consensus       643 l~~L~~L~Ls~N~l~~~~p~~l~---~l~~L~~L~Ls~N~l~~~----ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~-  714 (850)
                      ++.|+.|+|++|.+++..+..+.   .+++|+.|+|+.|.+++.    ++..+.++++|+.|+|++|.++...-..+.. 
T Consensus       251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~a  330 (362)
T 2ra8_A          251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKS  330 (362)
T ss_dssp             CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHH
T ss_pred             CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHH
Confidence            44567777777777654444443   366777777777777653    2333455677777777777776544333433 


Q ss_pred             CCCCCEEEcCCCc
Q 048351          715 VNRLSVMDLSHNN  727 (850)
Q Consensus       715 l~~L~~L~ls~N~  727 (850)
                      +  ...+++++|+
T Consensus       331 l--g~~~~~~~~~  341 (362)
T 2ra8_A          331 L--PMKIDVSDSQ  341 (362)
T ss_dssp             C--CSEEECCSBC
T ss_pred             c--CCEEEecCCc
Confidence            2  2446666655

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.71  E-value=6.4e-09  Score=111.78  Aligned_cols=182  Identities=15%  Similarity=0.148  Sum_probs=106.6

Q ss_pred             ccCCCCCEEEcCCCccc---------ccCCCccccccCccEEeccCCccccCCchhhcCCCCcCeeccccccceeecchh
Q 048351          469 LQFNMLRILNLANNNFS---------GKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAW  539 (850)
Q Consensus       469 ~~l~~L~~L~Ls~N~l~---------~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~  539 (850)
                      ..+++|+.|.+..+...         +.+...+..+++|+.|++++|.-. .++. +. +++|+.|++..|.+.......
T Consensus       136 ~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~  212 (362)
T 2ra8_A          136 EKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVED  212 (362)
T ss_dssp             HHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHH
T ss_pred             hhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHH
Confidence            34556666666543221         112233445677777777776311 2232 32 677888888777765333333


Q ss_pred             HHh-cCCCCCEEEccC--Cccccc-----cCcCc--CCCCCcceeecccccCcccCCccccCcccCccccccCccccccc
Q 048351          540 IGE-SLLNLVVLDLRS--NRFYGK-----IPFQL--CHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFS  609 (850)
Q Consensus       540 ~~~-~l~~L~~L~L~~--N~l~~~-----~p~~l--~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~  609 (850)
                      +.. .+++|+.|+|+.  |...+.     +...+  ..+++|++|+|++|.+.+..+..+...                 
T Consensus       213 l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a-----------------  275 (362)
T 2ra8_A          213 ILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLES-----------------  275 (362)
T ss_dssp             HHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHC-----------------
T ss_pred             HHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhC-----------------
Confidence            331 477888888753  221111     01112  247889999999888875433222111                 


Q ss_pred             cccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCC----ChhhhhccccCCeEecCCCcCccCCC
Q 048351          610 YAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGE----VPEEIMDLVGLIGLNLSRNNLTGYIT  685 (850)
Q Consensus       610 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~ip  685 (850)
                                                     ..++.|++|||+.|.+++.    ++..+..+++|+.|+|++|.++...-
T Consensus       276 -------------------------------~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~  324 (362)
T 2ra8_A          276 -------------------------------DILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMK  324 (362)
T ss_dssp             -------------------------------SSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHH
T ss_pred             -------------------------------ccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHH
Confidence                                           1234568999999999864    34445678999999999998875433


Q ss_pred             ccccc-cCCCCeeeCCCCc
Q 048351          686 PKIGQ-LQSLDFLDLSRNQ  703 (850)
Q Consensus       686 ~~l~~-l~~L~~L~Ls~N~  703 (850)
                      ..+.. +  ...+|++.++
T Consensus       325 ~~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          325 KELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             HHHHHHC--CSEEECCSBC
T ss_pred             HHHHHHc--CCEEEecCCc
Confidence            33433 2  3668999887

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.61  E-value=2.5e-06  Score=92.94  Aligned_cols=53  Identities=17%  Similarity=0.202  Sum_probs=22.9

Q ss_pred             cEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCCCccccccCCCCeeeCC
Q 048351          647 KSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLS  700 (850)
Q Consensus       647 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls  700 (850)
                      +.+++.++.++..-...|.++.+|+.++|..+ ++..-..+|.++++|+.+.+.
T Consensus       289 ~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip  341 (379)
T 4h09_A          289 TKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYP  341 (379)
T ss_dssp             CEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred             ccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence            44444444444333344444444444444432 332333344444445444443

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.55  E-value=1.7e-09  Score=110.16  Aligned_cols=66  Identities=24%  Similarity=0.275  Sum_probs=40.8

Q ss_pred             CCCCCCCEEeCCCCCCCC--CCCcccCCCCCCcEEEccCCCCCCCCCccccccCCCccEEeCCCCCCCC
Q 048351          145 GSLSKLEYLDLFAASFSG--PIPPLLGNLSRLQYLSLGYNKLLRAGNLDWISQLFSLRYLDLSSCNLSK  211 (850)
Q Consensus       145 ~~l~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~  211 (850)
                      .++++|++|+|++|.+++  .+|..+..+++|++|+|++|++........+..+ +|++|+|++|.+.+
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~  234 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCD  234 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGG
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCcc
Confidence            356777777777777776  3445566677777777777765433222333333 66666666666654

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.51  E-value=8.4e-06  Score=88.79  Aligned_cols=154  Identities=9%  Similarity=0.007  Sum_probs=100.2

Q ss_pred             hcCCCCcCeeccccccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccCcccCCccccCcccC
Q 048351          516 LKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAM  595 (850)
Q Consensus       516 l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L  595 (850)
                      +..+..+..+.+....-  .+....+....+|+.+.+..+ +.......+..+..|+.+.+..+ ++..-..+|.++..+
T Consensus       190 ~~~~~~~~~~~~~~~~~--~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l  265 (379)
T 4h09_A          190 YPAAKTGTEFTIPSTVK--TVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTAL  265 (379)
T ss_dssp             CCTTCCCSEEECCTTCC--EECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTC
T ss_pred             cccccccccccccccee--EEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehh
Confidence            33444555544443322  222333335667777776544 33344556667777777777554 433333444444443


Q ss_pred             ccccccCccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEec
Q 048351          596 TQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNL  675 (850)
Q Consensus       596 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L  675 (850)
                                                                         +.+++..+ ++......|.++++|+.+++
T Consensus       266 ---------------------------------------------------~~i~l~~~-i~~i~~~aF~~c~~L~~i~l  293 (379)
T 4h09_A          266 ---------------------------------------------------KTLNFYAK-VKTVPYLLCSGCSNLTKVVM  293 (379)
T ss_dssp             ---------------------------------------------------CEEEECCC-CSEECTTTTTTCTTCCEEEE
T ss_pred             ---------------------------------------------------cccccccc-ceeccccccccccccccccc
Confidence                                                               55666433 44445567889999999999


Q ss_pred             CCCcCccCCCccccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCC
Q 048351          676 SRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHN  726 (850)
Q Consensus       676 s~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N  726 (850)
                      .++.++..-...|.++++|+.++|..+ ++......|.++++|+.+.+..+
T Consensus       294 ~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~  343 (379)
T 4h09_A          294 DNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS  343 (379)
T ss_dssp             CCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred             cccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence            999998777789999999999999765 77677788999999998877543

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.39  E-value=4.4e-08  Score=94.91  Aligned_cols=99  Identities=12%  Similarity=0.044  Sum_probs=56.5

Q ss_pred             hhcCCCCCcEEEccCCCCCCCCCccccccccCCCCcccEEEccCCCCCCccchhhhcCCCCCCCCCCCCCCcEEEc--cC
Q 048351          218 EVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTL--SD  295 (850)
Q Consensus       218 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~ip~~l~~l~~L~~L~L--s~  295 (850)
                      .+...++|++|+|++|.+...........+... ++|++|+|++|.|+......      +...+...++|++|+|  ++
T Consensus        60 ~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n-~~L~~L~L~~N~i~~~g~~~------l~~~L~~n~~L~~L~L~~~~  132 (185)
T 1io0_A           60 ALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVN-NTLKSLNVESNFISGSGILA------LVEALQSNTSLIELRIDNQS  132 (185)
T ss_dssp             HHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHC-SSCCEEECCSSCCCHHHHHH------HHHGGGGCSSCCEEECCCCS
T ss_pred             HHHhCCCcCEEECcCCCCChHHHHHHHHHHHhC-CCcCEEECcCCcCCHHHHHH------HHHHHHhCCCceEEEecCCC
Confidence            344445555555555554432111111122222 56777777777776532222      1223455667888888  77


Q ss_pred             CcCCcc----cchhhhcCCCCcEEEccCCccc
Q 048351          296 NELDGE----IPKFFQNMFKLEGLSLRGNSLE  323 (850)
Q Consensus       296 N~l~~~----~p~~l~~l~~L~~L~L~~N~l~  323 (850)
                      |.+...    +...+...+.|++|+|++|.+.
T Consensus       133 N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          133 QPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             SCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             CCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            888754    3445566788999999999875

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.34  E-value=3.6e-07  Score=92.94  Aligned_cols=64  Identities=25%  Similarity=0.295  Sum_probs=30.4

Q ss_pred             cccccEEEcCCCCCCC--CChhhhhccccCCeEecCCCcCccCCCccccccC--CCCeeeCCCCcCcccC
Q 048351          643 LGLVKSVDLSSNKLGG--EVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQ--SLDFLDLSRNQFSGGI  708 (850)
Q Consensus       643 l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~--~L~~L~Ls~N~l~~~~  708 (850)
                      ++.|+.|+|++|+|++  .+|..+..+++|+.|+|++|+|++.  ..+..++  +|++|+|++|.+.+.+
T Consensus       169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~  236 (267)
T 3rw6_A          169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTF  236 (267)
T ss_dssp             CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGC
T ss_pred             CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCcccc
Confidence            3444555555555554  2334444555555555555555543  2233333  4555555555554433

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.28  E-value=6.4e-08  Score=93.73  Aligned_cols=128  Identities=10%  Similarity=0.117  Sum_probs=78.0

Q ss_pred             hhhcCCCCCcEEEccCC-CCCCCCCccccccccCCCCcccEEEccCCCCCCccchhhhcCCCCCCCCCCCCCCcEEEccC
Q 048351          217 QEVDKIPSLKTLYLEQC-DLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSD  295 (850)
Q Consensus       217 ~~l~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~ip~~l~~l~~L~~L~Ls~  295 (850)
                      ..+...++|++|+|++| .+...........+... ++|++|+|++|++.......+      .+.+...++|++|+|++
T Consensus        30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~-~~L~~L~Ls~n~i~~~g~~~l------~~~L~~n~~L~~L~L~~  102 (185)
T 1io0_A           30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTN-TYVKKFSIVGTRSNDPVAFAL------AEMLKVNNTLKSLNVES  102 (185)
T ss_dssp             HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTC-CSCCEEECTTSCCCHHHHHHH------HHHHHHCSSCCEEECCS
T ss_pred             HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhC-CCcCEEECcCCCCChHHHHHH------HHHHHhCCCcCEEECcC
Confidence            34555666666666666 55432211111233344 789999999999875433222      12234456899999999


Q ss_pred             CcCCcc----cchhhhcCCCCcEEEc--cCCccccccccccccccccccCCCCCChhccCCCCCCEEEccCCcCC
Q 048351          296 NELDGE----IPKFFQNMFKLEGLSL--RGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAGIS  364 (850)
Q Consensus       296 N~l~~~----~p~~l~~l~~L~~L~L--~~N~l~~~~~~~~~~~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~  364 (850)
                      |.|...    +...+...+.|++|+|  ++|.+.......             +...+...++|+.|++++|.+.
T Consensus       103 N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~-------------l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          103 NFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEME-------------IANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             SCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHH-------------HHHHHHHCSSCCEEECCCSSHH
T ss_pred             CcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHH-------------HHHHHHhCCCcCEEeccCCCCC
Confidence            999854    4556677788999999  888887543221             1122444556666666666553

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.88  E-value=4.1e-06  Score=78.85  Aligned_cols=85  Identities=19%  Similarity=0.262  Sum_probs=46.1

Q ss_pred             CCCCEEeCCCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCCccccccC----CCccEEeCCCCC-CCCCcchhhhhcCC
Q 048351          148 SKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAGNLDWISQL----FSLRYLDLSSCN-LSKSTDWLQEVDKI  222 (850)
Q Consensus       148 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~l----~~L~~L~Ls~n~-l~~~~~~~~~l~~l  222 (850)
                      .+|++||++++.++..--..+..+++|++|+|++|..++......++.+    ++|++|+|++|. ++..  -...+..+
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~--Gl~~L~~~  138 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDK--GIIALHHF  138 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHH--HHHHGGGC
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHH--HHHHHhcC
Confidence            3566666666655544334456666666666666653333333334443    356666666653 5442  23445556


Q ss_pred             CCCcEEEccCCC
Q 048351          223 PSLKTLYLEQCD  234 (850)
Q Consensus       223 ~~L~~L~L~~n~  234 (850)
                      ++|++|++++|.
T Consensus       139 ~~L~~L~L~~c~  150 (176)
T 3e4g_A          139 RNLKYLFLSDLP  150 (176)
T ss_dssp             TTCCEEEEESCT
T ss_pred             CCCCEEECCCCC
Confidence            666666666654

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.60  E-value=7e-06  Score=77.22  Aligned_cols=88  Identities=13%  Similarity=0.098  Sum_probs=68.3

Q ss_pred             CCCCEEeCCCCCCCCCCCCcccCCCCCCCEEeCCCCC-CCCCCCcccCCC----CCCcEEEccCCCCCCCCCccccccCC
Q 048351          123 HYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAAS-FSGPIPPLLGNL----SRLQYLSLGYNKLLRAGNLDWISQLF  197 (850)
Q Consensus       123 ~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~-l~~~~p~~l~~l----~~L~~L~Ls~N~l~~~~~~~~l~~l~  197 (850)
                      .+|++||++++.++...+ ..+..+++|++|+|++|. +++.--..++.+    ++|++|+|++|.-++......+.+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL-~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~  139 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGF-DHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR  139 (176)
T ss_dssp             CCEEEEEEESCCCCGGGG-GGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred             ceEeEEeCcCCCccHHHH-HHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence            479999999999886423 456889999999999995 665444456654    47999999999644444556688999


Q ss_pred             CccEEeCCCCC-CCC
Q 048351          198 SLRYLDLSSCN-LSK  211 (850)
Q Consensus       198 ~L~~L~Ls~n~-l~~  211 (850)
                      +|++|+++++. ++.
T Consensus       140 ~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          140 NLKYLFLSDLPGVKE  154 (176)
T ss_dssp             TCCEEEEESCTTCCC
T ss_pred             CCCEEECCCCCCCCc
Confidence            99999999985 554

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.25  E-value=6.4e-05  Score=72.08  Aligned_cols=120  Identities=15%  Similarity=0.138  Sum_probs=67.1

Q ss_pred             CCccEEeCCCC-CCCCC--cchhhhhcCCCCCcEEEccCCCCCCCCCccccccccCCCCcccEEEccCCCCCCccchhhh
Q 048351          197 FSLRYLDLSSC-NLSKS--TDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLF  273 (850)
Q Consensus       197 ~~L~~L~Ls~n-~l~~~--~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~  273 (850)
                      +.|++|+|++| .|...  ..+...+..-+.|+.|+|++|.+...........+... +.|++|+|++|.|+......+.
T Consensus        41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N-~tL~~L~L~~N~Ig~~Ga~ala  119 (197)
T 1pgv_A           41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETS-PSLRVLNVESNFLTPELLARLL  119 (197)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHC-SSCCEEECCSSBCCHHHHHHHH
T ss_pred             CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcC-CccCeEecCCCcCCHHHHHHHH
Confidence            34444444443 33321  12334455556666666666666533222122223333 6788888888887754333322


Q ss_pred             cCCCCCCCCCCCCCCcEEEccCC---cCCc----ccchhhhcCCCCcEEEccCCccc
Q 048351          274 NVSSIPDAPGPMISLRTLTLSDN---ELDG----EIPKFFQNMFKLEGLSLRGNSLE  323 (850)
Q Consensus       274 ~l~~ip~~l~~l~~L~~L~Ls~N---~l~~----~~p~~l~~l~~L~~L~L~~N~l~  323 (850)
                            +.+..-+.|++|+|++|   .+..    .+...+..-+.|+.|+++.|.+.
T Consensus       120 ------~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g  170 (197)
T 1pgv_A          120 ------RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME  170 (197)
T ss_dssp             ------HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred             ------HHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence                  23444556888998865   3332    24456777889999999887654

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.98  E-value=0.0011  Score=59.28  Aligned_cols=57  Identities=19%  Similarity=0.174  Sum_probs=40.2

Q ss_pred             eEecCCCcCc-cCCCccccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCCcCcc
Q 048351          672 GLNLSRNNLT-GYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSG  730 (850)
Q Consensus       672 ~L~Ls~N~l~-~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g  730 (850)
                      .++.+++.++ ..+|..+.  ++|+.|||++|+|+...+..|..+++|++|+|++|++.+
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C   69 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC   69 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence            5666666665 23444333  467888888888887777778888888888888888764

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.85  E-value=0.00017  Score=69.07  Aligned_cols=45  Identities=11%  Similarity=0.028  Sum_probs=23.9

Q ss_pred             ccccCCCCCCEEeCCCC-CCCCC---CCCcccCCCCCCCEEeCCCCCCC
Q 048351          117 PALLKLHYLRHLDLSFN-NFSGS---QIPMFIGSLSKLEYLDLFAASFS  161 (850)
Q Consensus       117 ~~l~~l~~L~~L~Ls~n-~l~~~---~~p~~~~~l~~L~~L~Ls~n~l~  161 (850)
                      ..+.+-+.|++|+|++| .|...   .+-..+..-+.|++|+|++|.+.
T Consensus        35 ~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~ig   83 (197)
T 1pgv_A           35 RLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAIS   83 (197)
T ss_dssp             HHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCB
T ss_pred             HHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCC
Confidence            34455667777777774 55421   01223344455566666555554

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.48  E-value=0.0032  Score=56.25  Aligned_cols=57  Identities=26%  Similarity=0.295  Sum_probs=48.5

Q ss_pred             cEEEcCCCCCC-CCChhhhhccccCCeEecCCCcCccCCCccccccCCCCeeeCCCCcCc
Q 048351          647 KSVDLSSNKLG-GEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFS  705 (850)
Q Consensus       647 ~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~  705 (850)
                      ..++.+++.++ ..+|..+.  .+|+.|+|++|+|+...+..|..+++|+.|+|++|.+.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            57999999997 46665433  36999999999999887888999999999999999886

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	850
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-20
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-16
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	9e-11
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-09
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	7e-09
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	5e-08
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-04
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-15
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	8e-13
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-10
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-10
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-09
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	9e-09
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-14
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-13
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-13
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	5e-12
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	5e-10
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-09
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	7e-09
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-04
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	0.002
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-11
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	7e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.003
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	7e-11
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	9e-09
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	7e-07
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	9e-10
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	6e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-08
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	4e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.002
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.002
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	7e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	5e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	7e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	9e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	8e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	9e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.001
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.004
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	5e-07
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	4e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	5e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	5e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	6e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.002
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.003
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	2e-06
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	2e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.004
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	3e-05
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	3e-04
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	0.002
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.002
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.004

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 89.8 bits (221), Expect = 4e-20
 Identities = 62/281 (22%), Positives = 102/281 (36%), Gaps = 6/281 (2%)

Query: 481 NNNFSGKIPNSCGYLQKMLTLSLHHNNFSG--ELPSLLKNFTHLRVVALEENSISGNIPA 538
           N  + G + ++     ++  L L   N      +PS L N  +L  + +   +       
Sbjct: 35  NRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIP 94

Query: 539 WIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQE 598
                L  L  L +      G IP  L  +  +  LD S N +SG +P   ++   +   
Sbjct: 95  PAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI 154

Query: 599 RSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGG 658
               +             + L   +      LT K              +    S  +  
Sbjct: 155 TFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN----LAFVDLSRNMLE 210

Query: 659 EVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRL 718
                +              N   +   K+G  ++L+ LDL  N+  G +P  L+Q+  L
Sbjct: 211 GDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFL 270

Query: 719 SVMDLSHNNLSGKIPTGTQLQSFNASVYDGNPELCGLPLPS 759
             +++S NNL G+IP G  LQ F+ S Y  N  LCG PLP+
Sbjct: 271 HSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLPA 311

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 79.8 bits (195), Expect = 1e-16
 Identities = 70/317 (22%), Positives = 112/317 (35%), Gaps = 45/317 (14%)

Query: 35  CIEEERKALLKFKQGLVDEFGFLSSWGSEGEKKDCCN--WRGVRCSN--QTGHVKVLDLH 90
           C  ++++ALL+ K+ L +    LSSW       DCCN  W GV C    QT  V  LDL 
Sbjct: 3   CNPQDKQALLQIKKDLGNP-TTLSSWLPTT---DCCNRTWLGVLCDTDTQTYRVNNLDLS 58

Query: 91  GTGRVKVLDI----------QTRVMSGNASLRGTLNPALLKLHYLRHLDLSFNNFSGSQI 140
           G    K   I              + G  +L G + PA+ KL  L +L ++  N SG+  
Sbjct: 59  GLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIP 118

Query: 141 PMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAGNLDWISQLFSLR 200
                    L  LD    + SG +PP + +L  L  ++   N++  A    + S      
Sbjct: 119 DFLSQI-KTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFT 177

Query: 201 YLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNS---------- 250
            + +S   L+           +  +                    +              
Sbjct: 178 SMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL 237

Query: 251 -----SPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIPKF 305
                S +L  L L  N +  ++   L            +  L +L +S N L GEIP+ 
Sbjct: 238 GKVGLSKNLNGLDLRNNRIYGTLPQGLTQ----------LKFLHSLNVSFNNLCGEIPQG 287

Query: 306 FQNMFKLEGLSLRGNSL 322
             N+ + +  +   N  
Sbjct: 288 G-NLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 61.7 bits (148), Expect = 9e-11
 Identities = 53/268 (19%), Positives = 88/268 (32%), Gaps = 13/268 (4%)

Query: 280 DAPGPMISLRTLTLSDNELDG--EIPKFFQNMFKLEGLSLRGN--------SLEGVISEH 329
           D       +  L LS   L     IP    N+  L  L + G              +++ 
Sbjct: 44  DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQL 103

Query: 330 FFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMT 389
            +   ++  +    P +L   K    LD S   +S ++P   S   + +    F  N+++
Sbjct: 104 HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI-TFDGNRIS 162

Query: 390 GRFPNYISSMFILESPGIDISSNHLEGPSPSLPSNAFYIDLSKNKFSGPISFLCSFSGQN 449
           G  P+   S   L +  + IS N L G  P   +N     +  ++          F    
Sbjct: 163 GAIPDSYGSFSKLFTS-MTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDK 221

Query: 450 LVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFS 509
                  +                L  L+L NN   G +P     L+ + +L++  NN  
Sbjct: 222 NTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281

Query: 510 GELPSLLKNFTHLRVVALEENSISGNIP 537
           GE+P    N     V A   N      P
Sbjct: 282 GEIPQ-GGNLQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 57.8 bits (138), Expect = 2e-09
 Identities = 53/285 (18%), Positives = 99/285 (34%), Gaps = 24/285 (8%)

Query: 191 DWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNS 250
           D  +Q + +  LDLS  NL K       +  +P L  LY+   +      +      +  
Sbjct: 44  DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL----VGPIPPAIAK 99

Query: 251 SPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIPKFFQNMF 310
              L  L +++ N++ +I  +L            + +L TL  S N L G +P    ++ 
Sbjct: 100 LTQLHYLYITHTNVSGAIPDFLSQ----------IKTLVTLDFSYNALSGTLPPSISSLP 149

Query: 311 KLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAGISDSIPDW 370
            L G++  GN + G I + + S              L  +   +  +++ A +  S    
Sbjct: 150 NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNML 209

Query: 371 FSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGI---DISSNHLEGPSPSLPSNAF- 426
             D S        +      +         +  S  +   D+ +N + G  P   +    
Sbjct: 210 EGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKF 269

Query: 427 --YIDLSKNKFSGPISFLCSFSGQNLVYLDLSSN--LLSGKLPDC 467
              +++S N   G I    +   Q       ++N  L    LP C
Sbjct: 270 LHSLNVSFNNLCGEIPQGGNL--QRFDVSAYANNKCLCGSPLPAC 312

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 55.9 bits (133), Expect = 7e-09
 Identities = 47/282 (16%), Positives = 81/282 (28%), Gaps = 24/282 (8%)

Query: 311 KLEGLSLRGNSLEGVIS-EHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAGISDSIPD 369
           ++  L L G +L          +N  YL                                
Sbjct: 51  RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPP--------------- 95

Query: 370 WFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSP-SLPSNAFYI 428
                  +L  L  +H  ++G  P+++S +  L +     ++     P   S   N   I
Sbjct: 96  -AIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI 154

Query: 429 DLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKI 488
               N+ SG I        +    + +S N L           N+       + N     
Sbjct: 155 TFDGNRISGAIPDSYGSFSKLFTSMTISRNRL--TGKIPPTFANLNLAFVDLSRNMLEGD 212

Query: 489 PNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLV 548
            +      K         N        +    +L  + L  N I G +P  +   L  L 
Sbjct: 213 ASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLT-QLKFLH 271

Query: 549 VLDLRSNRFYGKIPFQLCHLADIQILDLSLNNI--SGNIPKC 588
            L++  N   G+IP Q  +L    +   + N       +P C
Sbjct: 272 SLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSPLPAC 312

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 53.2 bits (126), Expect = 5e-08
 Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 126 RHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLL 185
             LDL  N   G+ +P  +  L  L  L++   +  G IP   GNL R    +   NK L
Sbjct: 247 NGLDLRNNRIYGT-LPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCL 304

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 41.3 bits (95), Expect = 3e-04
 Identities = 21/113 (18%), Positives = 33/113 (29%), Gaps = 5/113 (4%)

Query: 56  FLSSWGSEGEKKDCCNWRGVRCSNQTGHVKVLDLHGTGRVKVLDIQTRVMSGNASLRGTL 115
              S                           L           ++    +  N  + GTL
Sbjct: 202 VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNN-RIYGTL 260

Query: 116 NPALLKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASF--SGPIPP 166
              L +L +L  L++SFNN  G  IP   G+L + +             P+P 
Sbjct: 261 PQGLTQLKFLHSLNVSFNNLCGE-IP-QGGNLQRFDVSAYANNKCLCGSPLPA 311

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 77.3 bits (189), Expect = 1e-15
 Identities = 62/411 (15%), Positives = 127/411 (30%), Gaps = 48/411 (11%)

Query: 146 SLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAGNLDWISQLFSLRYLDLS 205
           +L++     L   + +  +     +L ++  L      +    ++D +  L +L  ++ S
Sbjct: 20  ALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGI---KSIDGVEYLNNLTQINFS 74

Query: 206 SCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLT 265
           +  L+     +  +  +  L  + +    +     +    +                   
Sbjct: 75  NNQLTD----ITPLKNLTKLVDILMNNNQIADITPLANLTNL------------------ 112

Query: 266 ASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGV 325
            +      N  +  D    + +L  L LS N +            +      +   L+ +
Sbjct: 113 -TGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPL 171

Query: 326 ISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSH 385
            +                   L    +   L  ++  ISD  P         L +L+ + 
Sbjct: 172 ANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGI---LTNLDELSLNG 228

Query: 386 NQMTGRFPNYISSMFILESPGIDISSNHLEGPSP-SLPSNAFYIDLSKNKFSGPISFLCS 444
           NQ+       ++S+  L    +D+++N +   +P S  +    + L  N+ S        
Sbjct: 229 NQLKD--IGTLASLTNLTD--LDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGL 284

Query: 445 FSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLH 504
            +  NL   +                   L  L L  NN S   P     L K+  L   
Sbjct: 285 TALTNLELNENQLE-----DISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFA 337

Query: 505 HNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSN 555
           +N  S    S L N T++  ++   N IS   P     +L  +  L L   
Sbjct: 338 NNKVSD--VSSLANLTNINWLSAGHNQISDLTPL---ANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 68.9 bits (167), Expect = 8e-13
 Identities = 54/382 (14%), Positives = 114/382 (29%), Gaps = 28/382 (7%)

Query: 128 LDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRA 187
             L   N + +     +  ++ L+   L   S  G     +  L+ L  ++   N+L   
Sbjct: 27  TVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFSNNQL--- 78

Query: 188 GNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSH 247
            ++  +  L  L  + +++  ++  T      +                L+   + +   
Sbjct: 79  TDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLE 138

Query: 248 LNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIPKFFQ 307
           L+S+   +   LS       +          P A    +         +           
Sbjct: 139 LSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLD----ISSNKVSDISVLA 194

Query: 308 NMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMG---PHFPKWLQTQKHFSVLDISSAGIS 364
            +  LE L    N +  +      +N   L +          L +  + + LD+++  IS
Sbjct: 195 KLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQIS 254

Query: 365 DSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSLPSN 424
           +  P        KL +L    NQ++   P    +         +   +     +    + 
Sbjct: 255 NLAPLSG---LTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLT- 310

Query: 425 AFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNF 484
             Y+ L  N  S         S   L  L  ++N +S            +  L+  +N  
Sbjct: 311 --YLTLYFNNISDISPV---SSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQI 363

Query: 485 SGKIPNSCGYLQKMLTLSLHHN 506
           S   P     L ++  L L+  
Sbjct: 364 SDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 61.9 bits (149), Expect = 1e-10
 Identities = 45/344 (13%), Positives = 98/344 (28%), Gaps = 30/344 (8%)

Query: 121 KLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLG 180
            L+ L  ++ S N  +       + +L+KL  + +     +   P           L   
Sbjct: 64  YLNNLTQINFSNNQLTDIT---PLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNN 120

Query: 181 YNKLLRAGNLDWISQLF-----SLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDL 235
               +                 ++  +   S   S                        L
Sbjct: 121 QITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERL 180

Query: 236 QLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSD 295
            +        S L    +LE+L  + N ++      +              +L  L+L+ 
Sbjct: 181 DISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILT------------NLDELSLNG 228

Query: 296 NELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSV 355
           N+L         ++  L  L L  N +  +      +  + LK+G +    +      + 
Sbjct: 229 NQLKD--IGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTA 286

Query: 356 LDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLE 415
           L       +             L  L    N ++   P  +SS+  L+   +  ++N + 
Sbjct: 287 LTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQR--LFFANNKVS 342

Query: 416 GPSP-SLPSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSN 458
             S  +  +N  ++    N+ S         +   +  L L+  
Sbjct: 343 DVSSLANLTNINWLSAGHNQISDLTPL---ANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 61.6 bits (148), Expect = 2e-10
 Identities = 56/333 (16%), Positives = 111/333 (33%), Gaps = 28/333 (8%)

Query: 423 SNAFYIDLSKNKFSGPISF---------LCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNM 473
           +N   I+ S N+ +              L + +    +    +   L+G         ++
Sbjct: 66  NNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDI 125

Query: 474 LRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSIS 533
             + NL N N      N+   +  +  L+       G   + LK   +L  +   + S +
Sbjct: 126 DPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSN 185

Query: 534 GNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFT 593
                 +   L NL  L   +N+     P  +    ++  L L+ N +   I    +   
Sbjct: 186 KVSDISVLAKLTNLESLIATNNQISDITPLGILT--NLDELSLNGNQLKD-IGTLASLTN 242

Query: 594 AMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSS 653
               + + N  +     +  ++ T L +       +    G          L    +L  
Sbjct: 243 LTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAG----------LTALTNLEL 292

Query: 654 NKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLS 713
           N+   E    I +L  L  L L  NN++      +  L  L  L  + N+ S    SSL+
Sbjct: 293 NENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRLFFANNKVSD--VSSLA 348

Query: 714 QVNRLSVMDLSHNNLSGKIPTG--TQLQSFNAS 744
            +  ++ +   HN +S   P    T++     +
Sbjct: 349 NLTNINWLSAGHNQISDLTPLANLTRITQLGLN 381

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 56.9 bits (136), Expect = 4e-09
 Identities = 51/416 (12%), Positives = 108/416 (25%), Gaps = 77/416 (18%)

Query: 287 SLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKW 346
            + TL      +  +     + +  L  ++   N L  +      +    + M  +    
Sbjct: 45  QVTTLQADRLGI--KSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIAD 102

Query: 347 LQTQKHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPG 406
           +    + + L   +   +             L  L  S N ++        +     S G
Sbjct: 103 ITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFG 162

Query: 407 IDISSNHLEGPSPSLPSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPD 466
             ++            +N   ++      +            NL  L  ++N +S   P 
Sbjct: 163 NQVTDLKP-------LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPL 215

Query: 467 CWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVA 526
                  L  L+L  N                                 L + T+L  + 
Sbjct: 216 GI--LTNLDELSLNGNQLKD--------------------------IGTLASLTNLTDLD 247

Query: 527 LEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIP 586
           L  N IS   P      L  L  L L +N+     P             L+   ++ N  
Sbjct: 248 LANNQISNLAPLS---GLTKLTELKLGANQISNISPLAGLT-------ALTNLELNENQL 297

Query: 587 KCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLV 646
           +  +  + +             S   P  +                          L  +
Sbjct: 298 EDISPISNLKNLTYLTLYFNNISDISPVSS--------------------------LTKL 331

Query: 647 KSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRN 702
           + +  ++NK+       + +L  +  L+   N ++      +  L  +  L L+  
Sbjct: 332 QRLFFANNKVSD--VSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 56.2 bits (134), Expect = 9e-09
 Identities = 38/180 (21%), Positives = 62/180 (34%), Gaps = 31/180 (17%)

Query: 117 PALLKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQY 176
             L  L  L  LDL+ N  S       +  L+KL  L L A   S   P     L+ L  
Sbjct: 235 GTLASLTNLTDLDLANNQISN---LAPLSGLTKLTELKLGANQISNISP-----LAGLTA 286

Query: 177 LSLGYNKLLRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQ 236
           L+       +  ++  IS L +L YL L   N+S     +  V  +  L+ L+     + 
Sbjct: 287 LTNLELNENQLEDISPISNLKNLTYLTLYFNNISD----ISPVSSLTKLQRLFFANNKVS 342

Query: 237 LQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDN 296
                    S L +  ++  L   +N ++                   +  +  L L+D 
Sbjct: 343 -------DVSSLANLTNINWLSAGHNQISDLT------------PLANLTRITQLGLNDQ 383

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 72.8 bits (177), Expect = 2e-14
 Identities = 44/272 (16%), Positives = 84/272 (30%), Gaps = 29/272 (10%)

Query: 125 LRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKL 184
              LDL  N  +         +L  L  L L     S   P     L +L+ L L  N  
Sbjct: 33  TALLDLQNNKITEI-KDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN-- 89

Query: 185 LRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRS 244
                L  + +       +L       +       + +  +  + L    L+     + +
Sbjct: 90  ----QLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGA 145

Query: 245 FSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIPK 304
           F  +     L  + ++  N+T +I   L              SL  L L  N++      
Sbjct: 146 FQGM---KKLSYIRIADTNIT-TIPQGLPP------------SLTELHLDGNKITKVDAA 189

Query: 305 FFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHF------PKWLQTQKHFSVLDI 358
             + +  L  L L  NS+  V +    +     ++  +       P  L   K+  V+ +
Sbjct: 190 SLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYL 249

Query: 359 SSAGISDSIPDWFSDTSHKLADLNFSHNQMTG 390
            +  IS    + F    +     ++S   +  
Sbjct: 250 HNNNISAIGSNDFCPPGYNTKKASYSGVSLFS 281

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 69.3 bits (168), Expect = 2e-13
 Identities = 58/310 (18%), Positives = 94/310 (30%), Gaps = 42/310 (13%)

Query: 251 SPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIPKFFQNMF 310
            P    L L  N +T                   + +L TL L +N++    P  F  + 
Sbjct: 30  PPDTALLDLQNNKIT----------EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLV 79

Query: 311 KLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAGISDSIPDW 370
           KLE L L  N L+ +  +                           L +    I+      
Sbjct: 80  KLERLYLSKNQLKELPEKMPK--------------------TLQELRVHENEITKVRKSV 119

Query: 371 FSD-TSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSLPSNAFYID 429
           F+      + +L  +  + +G        M  L      I+  ++      LP +   + 
Sbjct: 120 FNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYI--RIADTNITTIPQGLPPSLTELH 177

Query: 430 LSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIP 489
           L  NK +   +        NL  L LS N +S            LR L+L NN    K+P
Sbjct: 178 LDGNKITKVDAASL-KGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVP 235

Query: 490 NSCGYLQKMLTLSLHHNNFSG------ELPSLLKNFTHLRVVALEENSIS-GNIPAWIGE 542
                 + +  + LH+NN S         P           V+L  N +    I      
Sbjct: 236 GGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFR 295

Query: 543 SLLNLVVLDL 552
            +     + L
Sbjct: 296 CVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 68.9 bits (167), Expect = 4e-13
 Identities = 46/284 (16%), Positives = 93/284 (32%), Gaps = 17/284 (5%)

Query: 448 QNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNN 507
            +   LDL +N ++      +     L  L L NN  S   P +   L K+  L L  N 
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 508 FSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCH 567
                  + K    LRV   E   +  ++   +  + + +V L     +  G        
Sbjct: 91  LKELPEKMPKTLQELRVHENEITKVRKSVFNGL--NQMIVVELGTNPLKSSGIENGAFQG 148

Query: 568 LADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDI 627
           +  +  + ++  NI+        + T +      +      +    +    L       +
Sbjct: 149 MKKLSYIRIADTNITTIPQGLPPSLTEL------HLDGNKITKVDAASLKGLNNLAKLGL 202

Query: 628 VLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTG----- 682
              +    +         ++ + L++NKL  +VP  + D   +  + L  NN++      
Sbjct: 203 SFNSISAVDNGSLANTPHLRELHLNNNKL-VKVPGGLADHKYIQVVYLHNNNISAIGSND 261

Query: 683 -YITPKIGQLQSLDFLDLSRN--QFSGGIPSSLSQVNRLSVMDL 723
                   +  S   + L  N  Q+    PS+   V   + + L
Sbjct: 262 FCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 65.4 bits (158), Expect = 5e-12
 Identities = 51/288 (17%), Positives = 93/288 (32%), Gaps = 30/288 (10%)

Query: 274 NVSSIPDAPGPMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSN 333
            +  +P    P      L L +N++       F+N+  L  L L  N +  +        
Sbjct: 21  GLEKVPKDLPP--DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKIS------- 71

Query: 334 FSYLKMGPHFPKWLQTQKHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFP 393
                     P           L +S   +   +P+    T  +L        ++     
Sbjct: 72  ----------PGAFAPLVKLERLYLSKNQLK-ELPEKMPKTLQELRVHENEITKVRKSVF 120

Query: 394 NYISSMFILESPGIDISSNHLEGPSPSLPSNAFYIDLSKNKFSGPISFLCSFSGQNLVYL 453
           N ++ M ++E     + S+ +E  +        YI ++    +     L      +L  L
Sbjct: 121 NGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPP----SLTEL 176

Query: 454 DLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELP 513
            L  N ++          N L  L L+ N+ S     S       L     +NN   ++P
Sbjct: 177 HLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN-TPHLRELHLNNNKLVKVP 235

Query: 514 SLLKNFTHLRVVALEENSISG-----NIPAWIGESLLNLVVLDLRSNR 556
             L +  +++VV L  N+IS        P        +   + L SN 
Sbjct: 236 GGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNP 283

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 59.3 bits (142), Expect = 5e-10
 Identities = 48/257 (18%), Positives = 87/257 (33%), Gaps = 33/257 (12%)

Query: 474 LRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSIS 533
             +L+L NN  +         L+ + TL L +N  S   P        L  + L +N + 
Sbjct: 33  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 92

Query: 534 GNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFT 593
             +P  + ++L  L V +    +    + F   +   +  L  +    SG     F    
Sbjct: 93  -ELPEKMPKTLQELRVHENEITKVRKSV-FNGLNQMIVVELGTNPLKSSGIENGAFQGMK 150

Query: 594 AMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSS 653
            ++  R  +++  T    +P   T L                               L  
Sbjct: 151 KLSYIRIADTNITTIPQGLPPSLTEL------------------------------HLDG 180

Query: 654 NKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLS 713
           NK+       +  L  L  L LS N+++      +     L  L L+ N+    +P  L+
Sbjct: 181 NKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-VPGGLA 239

Query: 714 QVNRLSVMDLSHNNLSG 730
               + V+ L +NN+S 
Sbjct: 240 DHKYIQVVYLHNNNISA 256

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 57.4 bits (137), Expect = 2e-09
 Identities = 38/231 (16%), Positives = 75/231 (32%), Gaps = 8/231 (3%)

Query: 520 THLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLN 579
               ++ L+ N I+         +L NL  L L +N+     P     L  ++ L LS N
Sbjct: 31  PDTALLDLQNNKITEIKDGDFK-NLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 89

Query: 580 NISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEY 639
            +     K       +    +  +      +   ++  ++ +            G+    
Sbjct: 90  QLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM 149

Query: 640 KNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDL 699
           K     +  + ++   +   +P+ +     L  L+L  N +T      +  L +L  L L
Sbjct: 150 KK----LSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGL 202

Query: 700 SRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGKIPTGTQLQSFNASVYDGNP 750
           S N  S     SL+    L  + L++N L          +         N 
Sbjct: 203 SFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNN 253

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 55.8 bits (133), Expect = 7e-09
 Identities = 39/221 (17%), Positives = 75/221 (33%), Gaps = 10/221 (4%)

Query: 536 IPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAM 595
           +P  +     +  +LDL++N+          +L ++  L L  N IS   P  F     +
Sbjct: 25  VPKDLPP---DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 81

Query: 596 TQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNK 655
            +     +         P +       +      +T             +V  +  +  K
Sbjct: 82  ERLYLSKNQLKEL----PEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLK 137

Query: 656 LGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQV 715
             G        +  L  + ++  N+T   T   G   SL  L L  N+ +    +SL  +
Sbjct: 138 SSGIENGAFQGMKKLSYIRIADTNIT---TIPQGLPPSLTELHLDGNKITKVDAASLKGL 194

Query: 716 NRLSVMDLSHNNLSGKIPTGTQLQSFNASVYDGNPELCGLP 756
           N L+ + LS N++S               ++  N +L  +P
Sbjct: 195 NNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVP 235

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 42.7 bits (99), Expect = 1e-04
 Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 3/84 (3%)

Query: 647 KSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSG 706
           + V  S   L  +VP+++        L+L  N +T         L++L  L L  N+ S 
Sbjct: 13  RVVQCSDLGLE-KVPKDLPP--DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK 69

Query: 707 GIPSSLSQVNRLSVMDLSHNNLSG 730
             P + + + +L  + LS N L  
Sbjct: 70  ISPGAFAPLVKLERLYLSKNQLKE 93

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 38.9 bits (89), Expect = 0.002
 Identities = 34/197 (17%), Positives = 65/197 (32%), Gaps = 15/197 (7%)

Query: 123 HYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYN 182
              + + +           +  G+   ++ L     + +       G    L  L L  N
Sbjct: 122 GLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGN 181

Query: 183 KLLRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIH 242
           K+ +  +   +  L +L  L LS  +   S      +   P L+ L+L    L   P   
Sbjct: 182 KITK-VDAASLKGLNNLAKLGLSFNS--ISAVDNGSLANTPHLRELHLNNNKLVKVPGGL 238

Query: 243 RSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNEL-DGE 301
                      ++ + L  NN++ +I    F     P       S   ++L  N +   E
Sbjct: 239 ADH------KYIQVVYLHNNNIS-AIGSNDF---CPPGYNTKKASYSGVSLFSNPVQYWE 288

Query: 302 I-PKFFQNMFKLEGLSL 317
           I P  F+ ++    + L
Sbjct: 289 IQPSTFRCVYVRAAVQL 305

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.8 bits (153), Expect = 4e-11
 Identities = 56/456 (12%), Positives = 114/456 (25%), Gaps = 22/456 (4%)

Query: 125 LRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSG----PIPPLLGNLSRLQYLSLG 180
           ++ LD+     S ++    +  L + + + L     +      I   L     L  L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 181 YNKLLRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPT 240
            N+L   G +  + Q        +   +L                  L      L     
Sbjct: 64  SNELGDVG-VHCVLQGLQTPSCKIQKLSLQNCCLTGAGC------GVLSSTLRTLPTLQE 116

Query: 241 IHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDG 300
           +H S + L  +          +         L   S    +  P+ S+        EL  
Sbjct: 117 LHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTV 176

Query: 301 EIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISS 360
                 +   ++    L+ +  +    +      +                   +   S+
Sbjct: 177 SNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN 236

Query: 361 AGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPS 420
                 + +      H  + L        G        +  +      +    L G    
Sbjct: 237 KLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELG 296

Query: 421 LPSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLA 480
                   +          S                S++L+       LQ +  R+ +  
Sbjct: 297 DEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAG 356

Query: 481 NNNFSGKIPNSCGYLQKMLTLSLHHNNFSGE----LPSLLKNFTHLRVVALEENSISGNI 536
                  +      L+    L L   + S      L + L     LR + L  N +    
Sbjct: 357 VRELCQGLGQPGSVLR---VLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAG 413

Query: 537 PAWIGESLLN----LVVLDLRSNRFYGKIPFQLCHL 568
              + ES+      L  L L    +  ++  +L  L
Sbjct: 414 ILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.8 bits (132), Expect = 1e-08
 Identities = 57/441 (12%), Positives = 112/441 (25%), Gaps = 27/441 (6%)

Query: 174 LQYLSLGYNKLLRAGNLDWISQLFSLRYLDLSSCNLSKS--TDWLQEVDKIPSLKTLYLE 231
           +Q L +   +L  A   + +  L   + + L  C L+++   D    +   P+L  L L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 232 QCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNL------------TASIYPWLFNVSSIP 279
             +L               S  ++ L L    L                     ++S   
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 123

Query: 280 DAPGPMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKM 339
                +  L    L       ++   + ++       L          +    + + +  
Sbjct: 124 LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINE 183

Query: 340 GPHFPKWLQTQKHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSM 399
                     +     L+           D   D    +A          G        M
Sbjct: 184 AGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGM 243

Query: 400 FILESPGIDISSNHLEGPSPSLPSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNL 459
             L    +  SS             A              S        N +  + +  L
Sbjct: 244 AELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLL 303

Query: 460 LSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGE-----LPS 514
               L       ++                +     + +L L + +N             
Sbjct: 304 CETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQG 363

Query: 515 LLKNFTHLRVVALEENSISGNIPAWIGESLL---NLVVLDLRSNRFYGKIPFQLC----- 566
           L +  + LRV+ L +  +S +  + +  +LL   +L  LDL +N        QL      
Sbjct: 364 LGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQ 423

Query: 567 HLADIQILDLSLNNISGNIPK 587
               ++ L L     S  +  
Sbjct: 424 PGCLLEQLVLYDIYWSEEMED 444

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.4 bits (126), Expect = 7e-08
 Identities = 59/479 (12%), Positives = 121/479 (25%), Gaps = 44/479 (9%)

Query: 251 SPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGE----IPKFF 306
           S  +++L +    L+ + +  L  +         +   + + L D  L       I    
Sbjct: 1   SLDIQSLDIQCEELSDARWAELLPL---------LQQCQVVRLDDCGLTEARCKDISSAL 51

Query: 307 QNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAGISDS 366
           +    L  L+LR N L  V                              L + +  ++ +
Sbjct: 52  RVNPALAELNLRSNELGDVGVHCVLQGLQT------------PSCKIQKLSLQNCCLTGA 99

Query: 367 IPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSLPSNAF 426
                S T   L  L   H          +  +      G+      LE       S + 
Sbjct: 100 GCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLC----EGLLDPQCRLEKLQLEYCSLSA 155

Query: 427 YIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSG 486
                              +  N    +    +L   L D   Q   L++ +    + + 
Sbjct: 156 ASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNC 215

Query: 487 KIPNSCGYLQKMLTLSLHH-NNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLL 545
           +        +  L       N       + L          L    I        G   L
Sbjct: 216 RDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDL 275

Query: 546 NLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSA 605
             V+    S +       +L       + +  L            + +      S+ SS 
Sbjct: 276 CRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSV 335

Query: 606 ITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIM 665
           +  +  +         +   D  +        +  + L   + + L+   +       + 
Sbjct: 336 LAQNRFLLELQIS--NNRLEDAGVRELCQGLGQPGSVL---RVLWLADCDVSDSSCSSLA 390

Query: 666 DLVG----LIGLNLSRNNLTGYITPKIGQ-----LQSLDFLDLSRNQFSGGIPSSLSQV 715
             +     L  L+LS N L      ++ +        L+ L L    +S  +   L  +
Sbjct: 391 ATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.7 bits (124), Expect = 1e-07
 Identities = 61/460 (13%), Positives = 114/460 (24%), Gaps = 34/460 (7%)

Query: 98  LDIQTRVMSGNASLRGTLNPALLKLHYLRHLDLSFNNFSG---SQIPMFIGSLSKLEYLD 154
           LDIQ+  +             L  L   + + L     +      I   +     L  L+
Sbjct: 2   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 155 LFAASFSGPIPPLLG-----NLSRLQYLSLGYNKLLRAGNLDWISQLFSLRYLDLSSCNL 209
           L +          +         ++Q LSL    L  AG     S L +L  L     +L
Sbjct: 62  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQ--ELHL 119

Query: 210 SKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIY 269
           S +      +  +         + +         S +      S+      +  LT S  
Sbjct: 120 SDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNN 179

Query: 270 PWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEH 329
                   +          +   L                  +   +       G     
Sbjct: 180 DINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG 239

Query: 330 FFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMT 389
                       H    L+T   +     +             ++  +L+          
Sbjct: 240 DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEG 299

Query: 390 GRFPNYISSMFILESPGIDISSNHLEGPSPSLPSNAFYIDLSKNKF-----------SGP 438
            R           +   + + S        S  S+    +    +               
Sbjct: 300 ARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRE 359

Query: 439 ISFLCSFSGQNLVYLDLSSNLLSGK----LPDCWLQFNMLRILNLANNNFSGKIPNS-CG 493
           +       G  L  L L+   +S      L    L  + LR L+L+NN            
Sbjct: 360 LCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVE 419

Query: 494 YLQKMLT----LSLHHNNFSGELP----SLLKNFTHLRVV 525
            +++       L L+   +S E+     +L K+   LRV+
Sbjct: 420 SVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (105), Expect = 2e-05
 Identities = 15/90 (16%), Positives = 32/90 (35%), Gaps = 5/90 (5%)

Query: 646 VKSVDLSSNKLGGEVPEEIMD-LVGLIGLNLSRNNLTG----YITPKIGQLQSLDFLDLS 700
           ++S+D+   +L      E++  L     + L    LT      I+  +    +L  L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 701 RNQFSGGIPSSLSQVNRLSVMDLSHNNLSG 730
            N+        + Q  +     +   +L  
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (90), Expect = 0.001
 Identities = 17/123 (13%), Positives = 33/123 (26%), Gaps = 7/123 (5%)

Query: 227 TLYLEQCDLQLQPTIHRSFSHLNSS-PSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPM 285
           +L ++  D+Q +      ++ L       + + L    LT +          I  A    
Sbjct: 1   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEAR------CKDISSALRVN 54

Query: 286 ISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPK 345
            +L  L L  NEL            +     ++  SL+               +      
Sbjct: 55  PALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTL 114

Query: 346 WLQ 348
              
Sbjct: 115 QEL 117

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (89), Expect = 0.002
 Identities = 12/66 (18%), Positives = 23/66 (34%), Gaps = 5/66 (7%)

Query: 673 LNLSRNNLTGYITPKI-GQLQSLDFLDLSRNQFSG----GIPSSLSQVNRLSVMDLSHNN 727
           L++    L+     ++   LQ    + L     +      I S+L     L+ ++L  N 
Sbjct: 7   LDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE 66

Query: 728 LSGKIP 733
           L     
Sbjct: 67  LGDVGV 72

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (88), Expect = 0.003
 Identities = 23/107 (21%), Positives = 37/107 (34%), Gaps = 6/107 (5%)

Query: 69  CCNWRGVRCSNQTGHVKVLDLHGTGRVKVLDIQTRVMSGNASLRGTLNPALLKLHYLRHL 128
                          +          ++VL +    +S ++    +L   LL  H LR L
Sbjct: 345 LQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSC--SSLAATLLANHSLREL 402

Query: 129 DLSFNNFSGSQIPMFIGSL----SKLEYLDLFAASFSGPIPPLLGNL 171
           DLS N    + I   + S+      LE L L+   +S  +   L  L
Sbjct: 403 DLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQAL 449

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.8 bits (148), Expect = 7e-11
 Identities = 48/288 (16%), Positives = 84/288 (29%), Gaps = 10/288 (3%)

Query: 443 CSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLS 502
           C    +  V        L   +P         + + L  N  S     S    + +  L 
Sbjct: 6   CVCYNEPKVTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILW 62

Query: 503 LHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIP 562
           LH N  +    +       L  + L +N+   ++       L  L  L L         P
Sbjct: 63  LHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGP 122

Query: 563 FQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVH 622
                LA +Q L L  N +       F +   +T    + +   +           L   
Sbjct: 123 GLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRL 182

Query: 623 IFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTG 682
           +     +       +     LG + ++ L +N L     E +  L  L  L L+ N    
Sbjct: 183 LLHQNRVAHVHPHAFRD---LGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239

Query: 683 YITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSG 730
                      L     S ++    +P  L+      +  L+ N+L G
Sbjct: 240 DC-RARPLWAWLQKFRGSSSEVPCSLPQRLAG---RDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.2 bits (131), Expect = 9e-09
 Identities = 41/292 (14%), Positives = 75/292 (25%), Gaps = 28/292 (9%)

Query: 232 QCDLQLQPTIHRSFSHLNSSP-----SLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMI 286
            C  + + T       L + P     + + + L  N ++               +     
Sbjct: 7   VCYNEPKVTTSCPQQGLQAVPVGIPAASQRIFLHGNRIS----------HVPAASFRACR 56

Query: 287 SLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLK-------- 338
           +L  L L  N L       F  +  LE L L  N+    +    F     L         
Sbjct: 57  NLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG 116

Query: 339 MGPHFPKWLQTQKHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISS 398
           +    P   +       L +    +     D F D    L  L    N+++         
Sbjct: 117 LQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDL-GNLTHLFLHGNRISSVPERAFRG 175

Query: 399 MFILESPGIDISSNHLEGPSPSLPSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSN 458
           +  L+   +  +      P                     +        + L YL L+ N
Sbjct: 176 LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235

Query: 459 LLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSG 510
                     L +  L+    +++     +P     L       L  N+  G
Sbjct: 236 PWVCDCRARPL-WAWLQKFRGSSSEVPCSLPQR---LAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.4 bits (116), Expect = 7e-07
 Identities = 51/280 (18%), Positives = 80/280 (28%), Gaps = 44/280 (15%)

Query: 125 LRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKL 184
            + + L  N  S         +   L  L L +   +         L+ L+ L L  N  
Sbjct: 34  SQRIFLHGNRISHV-PAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 185 LRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRS 244
           LR+ +      L  L  L L  C              + +L+ LYL+   LQ  P     
Sbjct: 93  LRSVDPATFHGLGRLHTLHLDRCG--LQELGPGLFRGLAALQYLYLQDNALQALPD---- 146

Query: 245 FSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSI--------------PDAPGPMISLRT 290
                   +L  L L  N +++        + S+              P A   +  L T
Sbjct: 147 -DTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMT 205

Query: 291 LTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQ 350
           L L  N L     +    +  L+ L L  N                         WLQ  
Sbjct: 206 LYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR------------PLWAWLQK- 252

Query: 351 KHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTG 390
                   SS+ +  S+P   +           + N + G
Sbjct: 253 -----FRGSSSEVPCSLPQRLAGRDL----KRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.0 bits (102), Expect = 4e-05
 Identities = 37/245 (15%), Positives = 66/245 (26%), Gaps = 29/245 (11%)

Query: 536 IPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAM 595
           +P  I         + L  NR             ++ IL L  N ++      F     +
Sbjct: 26  VPVGIPA---ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82

Query: 596 TQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNK 655
            Q    +++ +      P+    L       +     +         L  ++ + L  N 
Sbjct: 83  EQLDLSDNAQLRSVD--PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA 140

Query: 656 LGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSL--- 712
           L     +   DL  L  L L  N ++         L SLD L L +N+ +   P +    
Sbjct: 141 LQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDL 200

Query: 713 ---------------------SQVNRLSVMDLSHNNLSGKIPTGTQLQSFNASVYDGNPE 751
                                + +  L  + L+ N                      +  
Sbjct: 201 GRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEV 260

Query: 752 LCGLP 756
            C LP
Sbjct: 261 PCSLP 265

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.2 bits (139), Expect = 9e-10
 Identities = 41/240 (17%), Positives = 67/240 (27%), Gaps = 12/240 (5%)

Query: 89  LHGTGRVKVLDIQTRVMSGNASLRGTLNPALLKLHYLRHLDLSFNNFSGSQIPMFIGSLS 148
           LH     ++L           S              ++H+DLS +    S +   +   S
Sbjct: 12  LHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCS 71

Query: 149 KLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLL-RAGNLDWISQLFSLRYLDLSSC 207
           KL+ L L     S PI   L   S L  L+L              +S    L  L+LS C
Sbjct: 72  KLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWC 131

Query: 208 NLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTAS 267
                      V  +    T        +       S         +         L   
Sbjct: 132 FDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKND 191

Query: 268 IYPWLFNVSSIPDAPGPMISLRTLTLSD-NELDGEIPKFFQNMFKLEGLSLRGNSLEGVI 326
            +               +  L+ L+LS   ++  E       +  L+ L + G   +G +
Sbjct: 192 CFQEF----------FQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTL 241

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.6 bits (109), Expect = 6e-06
 Identities = 19/90 (21%), Positives = 38/90 (42%), Gaps = 3/90 (3%)

Query: 645 LVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQF 704
           L +++DL+   L  +V   ++   G+I     R+ +   +  +      +  +DLS +  
Sbjct: 1   LWQTLDLTGKNLHPDVTGRLLSQ-GVIAFRCPRSFMDQPL-AEHFSPFRVQHMDLSNSVI 58

Query: 705 SG-GIPSSLSQVNRLSVMDLSHNNLSGKIP 733
               +   LSQ ++L  + L    LS  I 
Sbjct: 59  EVSTLHGILSQCSKLQNLSLEGLRLSDPIV 88

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 54.1 bits (128), Expect = 3e-08
 Identities = 52/337 (15%), Positives = 108/337 (32%), Gaps = 34/337 (10%)

Query: 198 SLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETL 257
               L+L++  LS   +        P L++L      L   P             SL++L
Sbjct: 39  QAHELELNNLGLSSLPEL------PPHLESLVASCNSLTELP---------ELPQSLKSL 83

Query: 258 GLSYNNLTASIYP----WLFNVSSIPDAPGPMISLRTLTLSDNELDGEIPKFFQNMFKLE 313
            +  NNL A            VS+      P +   +     +  +  + K       LE
Sbjct: 84  LVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLE 143

Query: 314 GLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAGISDSIPDWFSD 373
            ++   N LE +         + +    +  K L          ++   I + +P+  + 
Sbjct: 144 FIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNL 203

Query: 374 TSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSLPSNAFYIDLSK- 432
                   + +  +     P  + ++ + ++   D+           +  N F       
Sbjct: 204 PFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELP 263

Query: 433 -----NKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGK 487
                   S            +L  L++S+N L  +LP    +   L  L  + N+ + +
Sbjct: 264 PNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPR---LERLIASFNHLA-E 318

Query: 488 IPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRV 524
           +P     L+    L + +N    E P + ++   LR+
Sbjct: 319 VPELPQNLK---QLHVEYNPLR-EFPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 51.7 bits (122), Expect = 2e-07
 Identities = 49/341 (14%), Positives = 96/341 (28%), Gaps = 32/341 (9%)

Query: 253 SLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIPKFFQNMFKL 312
               L L+   L+           S+P+ P     L +L  S N L  E+P+  Q++  L
Sbjct: 39  QAHELELNNLGLS-----------SLPELPP---HLESLVASCNSLT-ELPELPQSLKSL 83

Query: 313 EGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAGISDSIPDWFS 372
              +    +L  +     +   S  ++         +             + ++      
Sbjct: 84  LVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIID-------VDNNSLKKLP 136

Query: 373 DTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSLPSNAFYIDLSK 432
           D    L  +   +NQ+                   +      + P       A    L +
Sbjct: 137 DLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEE 196

Query: 433 NKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSC 492
                 + FL +    N +   L     S +  +    +         +  F     N  
Sbjct: 197 LPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIF 256

Query: 493 GYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDL 552
             L ++     + N  S E+ SL      L  + +  N +   +PA        L  L  
Sbjct: 257 SGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPP----RLERLIA 311

Query: 553 RSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFT 593
             N    ++P    +L   + L +  N +    P    +  
Sbjct: 312 SFNHL-AEVPELPQNL---KQLHVEYNPLRE-FPDIPESVE 347

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 46.4 bits (108), Expect = 1e-05
 Identities = 43/315 (13%), Positives = 83/315 (26%), Gaps = 20/315 (6%)

Query: 449 NLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNF 508
               L+L++  LS  LP+       L  L  + N+ + ++P     L+ +L  + +    
Sbjct: 39  QAHELELNNLGLS-SLPELPPH---LESLVASCNSLT-ELPELPQSLKSLLVDNNNLKAL 93

Query: 509 SGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHL 568
           S   P L         +       + +    I     +L  L                  
Sbjct: 94  SDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLE 153

Query: 569 ADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPS-------RTTMLPV 621
              ++ +L                  +        +       +P         T     
Sbjct: 154 ELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADN 213

Query: 622 HIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLT 681
           ++   +  L         ++           S             L  L       N  +
Sbjct: 214 NLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASS 273

Query: 682 GYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGKIPTGTQLQSF 741
             I        SL+ L++S N+    +P+      RL  +  S N+L+        L+  
Sbjct: 274 NEIRSLCDLPPSLEELNVSNNKLI-ELPALPP---RLERLIASFNHLAEVPELPQNLKQL 329

Query: 742 NASVYDGNPELCGLP 756
           +      NP L   P
Sbjct: 330 HVE---YNP-LREFP 340

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 44.8 bits (104), Expect = 3e-05
 Identities = 47/303 (15%), Positives = 91/303 (30%), Gaps = 18/303 (5%)

Query: 252 PSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIPKFFQNMFK 311
           P LE+L  S N+LT  +     ++ S+      + +L  L      L     +  +    
Sbjct: 58  PHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPEL 116

Query: 312 LEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAGISDSIPDWF 371
                L+   ++    +        L+        L+       L   +A  +D+     
Sbjct: 117 QNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKK 176

Query: 372 SDTSHKLADLNFSHNQMTGRFPNY-------ISSMFILESPGIDISSNHLEGPSPSLPSN 424
                   +   + N +    P                    +      LE  +      
Sbjct: 177 LPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYL 236

Query: 425 AFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNF 484
               +L ++     +S         L       N  S ++         L  LN++NN  
Sbjct: 237 TDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKL 296

Query: 485 SGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESL 544
             ++P     L++   L    N+ + E+P L +N   L    +E N +    P    ES+
Sbjct: 297 I-ELPALPPRLER---LIASFNHLA-EVPELPQNLKQLH---VEYNPLRE-FPDIP-ESV 346

Query: 545 LNL 547
            +L
Sbjct: 347 EDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 44.4 bits (103), Expect = 4e-05
 Identities = 45/317 (14%), Positives = 83/317 (26%), Gaps = 21/317 (6%)

Query: 421 LPSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDC-------WLQFNM 473
           L   A  ++L+    S            +L  L  S N L+ +LP+         +  N 
Sbjct: 36  LDRQAHELELNNLGLSSLPELPP-----HLESLVASCNSLT-ELPELPQSLKSLLVDNNN 89

Query: 474 LRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSIS 533
           L+ L+           ++    +     +           + LK    L        + +
Sbjct: 90  LKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGN 149

Query: 534 GNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFT 593
             +        L  +      N    K+P     L  I   +  L  +       F    
Sbjct: 150 NQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTI 209

Query: 594 AMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSS 653
                       +  S    +        +      LT+        + L  +       
Sbjct: 210 YADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYL 269

Query: 654 NKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLS 713
           N    E+         L  LN+S N L   +     +L+    L  S N  +  +P    
Sbjct: 270 NASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLER---LIASFNHLA-EVPELPQ 324

Query: 714 QVNRLSVMDLSHNNLSG 730
               L  + + +N L  
Sbjct: 325 N---LKQLHVEYNPLRE 338

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 42.5 bits (98), Expect = 2e-04
 Identities = 49/331 (14%), Positives = 93/331 (28%), Gaps = 15/331 (4%)

Query: 148 SKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAGNLDWISQLFSLRYLDLSSC 207
            +   L+L     S  +P L  +L   + L    N L     L     L SL   + +  
Sbjct: 38  RQAHELELNNLGLSS-LPELPPHL---ESLVASCNSLTELPEL--PQSLKSLLVDNNNLK 91

Query: 208 NLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTAS 267
            LS     L+ +    +      E  +      I    + L   P L             
Sbjct: 92  ALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQ 151

Query: 268 IYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVIS 327
           +       +          +     L D  L  E      N+ +          L  + +
Sbjct: 152 LEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYA 211

Query: 328 EHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQ 387
           ++                 ++      + ++  +     + +       +L    +  N 
Sbjct: 212 DNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNA 271

Query: 388 MTGRFPNYISSMFILESPGIDISSNHLEGPSPSLPSNAFYIDLSKNKFSGPISFLCSFSG 447
            +    +       LE   +++S+N L    P+LP     +  S N  +           
Sbjct: 272 SSNEIRSLCDLPPSLEE--LNVSNNKLIE-LPALPPRLERLIASFNHLAEVPELP----- 323

Query: 448 QNLVYLDLSSNLLSGKLPDCWLQFNMLRILN 478
           QNL  L +  N L  + PD       LR+ +
Sbjct: 324 QNLKQLHVEYNPLR-EFPDIPESVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.0 bits (89), Expect = 0.002
 Identities = 19/99 (19%), Positives = 34/99 (34%), Gaps = 15/99 (15%)

Query: 132 FNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAGNLD 191
           + N S ++I         LE L++        +P L   L   + L   +N L     L 
Sbjct: 268 YLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPALPPRL---ERLIASFNHLAEVPEL- 322

Query: 192 WISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYL 230
                 +L+ L +    L +  D         S++ L +
Sbjct: 323 ----PQNLKQLHVEYNPLREFPDI------PESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 38.7 bits (88), Expect = 0.002
 Identities = 19/85 (22%), Positives = 33/85 (38%), Gaps = 14/85 (16%)

Query: 122 LHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGY 181
              L  L++S N     ++P       +LE L       +  +P L  N   L+ L + Y
Sbjct: 283 PPSLEELNVSNNKL--IELP---ALPPRLERLIASFNHLAE-VPELPQN---LKQLHVEY 333

Query: 182 NKLLRAGNLDWISQLFSLRYLDLSS 206
           N L    ++       S+  L ++S
Sbjct: 334 NPLREFPDI-----PESVEDLRMNS 353

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 51.3 bits (121), Expect = 7e-08
 Identities = 36/174 (20%), Positives = 64/174 (36%), Gaps = 5/174 (2%)

Query: 407 IDISSNHLEGPSPSLPSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPD 466
           +D +   L+     +P +   + L+ N+     S        +LV L+L  N L+G  P+
Sbjct: 13  VDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPN 72

Query: 467 CWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVA 526
            +   + ++ L L  N            L ++ TL+L+ N  S  +P   ++   L  + 
Sbjct: 73  AFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLN 132

Query: 527 LEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNN 580
           L  N  + N           L    L         P     + D+QI DL  + 
Sbjct: 133 LASNPFNCNCHLAWF--AEWLRKKSLNGGAARCGAPS---KVRDVQIKDLPHSE 181

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.7 bits (117), Expect = 5e-07
 Identities = 37/212 (17%), Positives = 64/212 (30%), Gaps = 11/212 (5%)

Query: 517 KNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDL 576
                   V  ++ +++  +P  + +   +  +L L  N  Y      L     +  L+L
Sbjct: 7   SKVASHLEVNCDKRNLT-ALPPDLPK---DTTILHLSENLLYTFSLATLMPYTRLTQLNL 62

Query: 577 SLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSE 636
                                       +     ++P     LP     D+         
Sbjct: 63  D------RAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLP 116

Query: 637 YEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDF 696
                 LG ++ + L  N+L    P  +     L  L+L+ NNLT      +  L++LD 
Sbjct: 117 LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDT 176

Query: 697 LDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNL 728
           L L  N     IP      + L    L  N  
Sbjct: 177 LLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.3 bits (116), Expect = 7e-07
 Identities = 34/205 (16%), Positives = 61/205 (29%), Gaps = 8/205 (3%)

Query: 121 KLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLG 180
           K+     ++    N +   +P  +        L L            L   +RL  L+L 
Sbjct: 8   KVASHLEVNCDKRNLT--ALPPDLPKD--TTILHLSENLLYTFSLATLMPYTRLTQLNLD 63

Query: 181 YNKLLRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKT--LYLEQCDLQLQ 238
             +L +      +  L +L        +L      L  +  +         L    L+  
Sbjct: 64  RAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGL 123

Query: 239 PTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSI-PDAPGPMISLRTLTLSDNE 297
             +   +   N   +L    L+       +     N++ +       + +L TL L +N 
Sbjct: 124 GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS 183

Query: 298 LDGEIPKFFQNMFKLEGLSLRGNSL 322
               IPK F     L    L GN  
Sbjct: 184 -LYTIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.9 bits (115), Expect = 9e-07
 Identities = 31/214 (14%), Positives = 57/214 (26%), Gaps = 11/214 (5%)

Query: 491 SCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVL 550
               +   L ++    N +  LP  L       ++ L EN +     A +      L  L
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDL--PKDTTILHLSENLLYTFSLATLM-PYTRLTQL 60

Query: 551 DLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSY 610
           +L               +     L  +       + +     T +    +  +S    + 
Sbjct: 61  NLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL 120

Query: 611 AVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGL 670
                   L +           K            ++ + L++N L       +  L  L
Sbjct: 121 RGLGELQELYLKGNE------LKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENL 174

Query: 671 IGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQF 704
             L L  N+L   I         L F  L  N +
Sbjct: 175 DTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.2 bits (108), Expect = 8e-06
 Identities = 36/195 (18%), Positives = 61/195 (31%), Gaps = 26/195 (13%)

Query: 407 IDISSNHLEGPSPSLPSNAFYIDLSKNKFSG-PISFLCSFSGQNLVYLDLSSNLLSGKLP 465
           ++    +L    P LP +   + LS+N      ++ L  ++   L  L+L    L+    
Sbjct: 15  VNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYT--RLTQLNLDRAELTKLQV 72

Query: 466 DCWLQFNMLRILNLANNN---------------------FSGKIPNSCGYLQKMLTLSLH 504
           D  L       L+                           +     +   L ++  L L 
Sbjct: 73  DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132

Query: 505 HNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQ 564
            N      P LL     L  ++L  N+++      +   L NL  L L+ N  Y  IP  
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLN-GLENLDTLLLQENSLY-TIPKG 190

Query: 565 LCHLADIQILDLSLN 579
                 +    L  N
Sbjct: 191 FFGSHLLPFAFLHGN 205

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.8 bits (99), Expect = 9e-05
 Identities = 33/236 (13%), Positives = 61/236 (25%), Gaps = 35/236 (14%)

Query: 249 NSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIPKFFQN 308
           +   S   +     NLT           ++P           L LS+N L          
Sbjct: 7   SKVASHLEVNCDKRNLT-----------ALPPDLPK--DTTILHLSENLLYTFSLATLMP 53

Query: 309 MFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAGISDSIP 368
             +L  L+L    L  +  +        L +  +  + L                     
Sbjct: 54  YTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQT-----------LPAL 102

Query: 369 DWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSLPSNAFYI 428
                + ++L  L     +  G                       L     +       +
Sbjct: 103 TVLDVSFNRLTSLPLGALRGLGELQELYLKGNE---------LKTLPPGLLTPTPKLEKL 153

Query: 429 DLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNF 484
            L+ N  +   + L +   +NL  L L  N L   +P  +   ++L    L  N +
Sbjct: 154 SLANNNLTELPAGLLNGL-ENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (90), Expect = 0.001
 Identities = 33/180 (18%), Positives = 57/180 (31%), Gaps = 5/180 (2%)

Query: 351 KHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDIS 410
           K  ++L +S   +           + +L  LN    ++T    +    +  L +  +  +
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYT-RLTQLNLDRAELTKLQVDGTLPV--LGTLDLSHN 87

Query: 411 SNHLEGPSPSLPSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQ 470
                            +D+S N+ +  +          L  L L  N L    P     
Sbjct: 88  QLQSLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLPPGLLTP 146

Query: 471 FNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEEN 530
              L  L+LANNN +         L+ + TL L  N+    +P        L    L  N
Sbjct: 147 TPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (86), Expect = 0.004
 Identities = 14/65 (21%), Positives = 27/65 (41%), Gaps = 3/65 (4%)

Query: 663 EIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMD 722
           E+  +   + +N  + NLT  + P + +      L LS N       ++L    RL+ ++
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 723 LSHNN 727
           L    
Sbjct: 62  LDRAE 66

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.0 bits (111), Expect = 5e-07
 Identities = 28/113 (24%), Positives = 49/113 (43%), Gaps = 5/113 (4%)

Query: 117 PALLKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQY 176
             L +L  + HLDLS N      +P  + +L  LE L     +          NL RLQ 
Sbjct: 14  CHLEQLLLVTHLDLSHNRLRA--LPPALAALRCLEVLQASDNALENVDGV--ANLPRLQE 69

Query: 177 LSLGYNKLLRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEV-DKIPSLKTL 228
           L L  N+L ++  +  +     L  L+L   +L +     + + + +PS+ ++
Sbjct: 70  LLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.7 bits (105), Expect = 4e-06
 Identities = 22/128 (17%), Positives = 47/128 (36%), Gaps = 11/128 (8%)

Query: 427 YIDLSKNKFSGPISFLCSFSG-QNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFS 485
            + L+       ++ LC       + +LDLS N L    P       +  +     ++ +
Sbjct: 2   VLHLAHKD----LTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVL---QASDNA 54

Query: 486 GKIPNSCGYLQKMLTLSLHHNNF-SGELPSLLKNFTHLRVVALEENSISG--NIPAWIGE 542
            +  +    L ++  L L +N          L +   L ++ L+ NS+     I   + E
Sbjct: 55  LENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAE 114

Query: 543 SLLNLVVL 550
            L ++  +
Sbjct: 115 MLPSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.3 bits (91), Expect = 3e-04
 Identities = 22/112 (19%), Positives = 41/112 (36%), Gaps = 11/112 (9%)

Query: 475 RILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSL--LKNFTHLRVVALEENSI 532
           R+L+LA+ + +  +      L  +  L L HN      P+L  L+    L+       ++
Sbjct: 1   RVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV 58

Query: 533 SGNIPAWIGESLLNLVVLDLRSNRF-YGKIPFQLCHLADIQILDLSLNNISG 583
            G       +       L L +NR         L     + +L+L  N++  
Sbjct: 59  DGVANLPRLQE------LLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.5 bits (89), Expect = 5e-04
 Identities = 14/118 (11%), Positives = 30/118 (25%), Gaps = 7/118 (5%)

Query: 289 RTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISE----HFFSNFSYLKMGPHFP 344
           R L L+  +L   +    + +  +  L L  N L  +                       
Sbjct: 1   RVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV 58

Query: 345 KWLQTQKHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFIL 402
             +        L + +  +  S       +  +L  LN   N +          +  +
Sbjct: 59  DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE-EGIQERLAEM 115

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.5 bits (89), Expect = 5e-04
 Identities = 26/102 (25%), Positives = 38/102 (37%), Gaps = 10/102 (9%)

Query: 164 IPPLLGNLSRLQYLSLGYNKLLRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIP 223
           +   L  L  + +L L +N+L        ++ L  L  L  S        + +  V  +P
Sbjct: 12  VLCHLEQLLLVTHLDLSHNRL--RALPPALAALRCLEVLQASDNA----LENVDGVANLP 65

Query: 224 SLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLT 265
            L+ L L    LQ    I      L S P L  L L  N+L 
Sbjct: 66  RLQELLLCNNRLQQSAAI----QPLVSCPRLVLLNLQGNSLC 103

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.5 bits (89), Expect = 6e-04
 Identities = 25/144 (17%), Positives = 43/144 (29%), Gaps = 25/144 (17%)

Query: 175 QYLSLGYNKLLRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCD 234
           + L L +  L     L  + QL  + +LDLS   L      L  +  +  L+       +
Sbjct: 1   RVLHLAHKDL---TVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN 57

Query: 235 LQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLS 294
           +     + R           + L L  N L  S                    L  L L 
Sbjct: 58  VDGVANLPRL----------QELLLCNNRLQQSAAIQPL---------VSCPRLVLLNLQ 98

Query: 295 DNEL---DGEIPKFFQNMFKLEGL 315
            N L   +G   +  + +  +  +
Sbjct: 99  GNSLCQEEGIQERLAEMLPSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.6 bits (84), Expect = 0.002
 Identities = 26/112 (23%), Positives = 39/112 (34%), Gaps = 19/112 (16%)

Query: 226 KTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTAS-----------IYPWLFN 274
           + L+L   DL           HL     +  L LS+N L A            +     N
Sbjct: 1   RVLHLAHKDLT-------VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDN 53

Query: 275 VSSIPDAPGPMISLRTLTLSDNEL-DGEIPKFFQNMFKLEGLSLRGNSLEGV 325
                D    +  L+ L L +N L      +   +  +L  L+L+GNSL   
Sbjct: 54  ALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.6 bits (84), Expect = 0.003
 Identities = 18/106 (16%), Positives = 36/106 (33%), Gaps = 5/106 (4%)

Query: 452 YLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGE 511
            L L+   L+        Q  ++  L+L++N      P         +  +  +   + +
Sbjct: 2   VLHLAHKDLTV--LCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD 59

Query: 512 LPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRF 557
             + L     L    L  N +  +       S   LV+L+L+ N  
Sbjct: 60  GVANLPRLQELL---LCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 102

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 48.7 bits (114), Expect = 2e-06
 Identities = 41/319 (12%), Positives = 82/319 (25%), Gaps = 22/319 (6%)

Query: 253 SLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGE----IPKFFQN 308
           S+E   L  + +T        +  S+        S++ + LS N +  E    + +   +
Sbjct: 4   SIEGKSLKLDAITTE------DEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIAS 57

Query: 309 MFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAGISDSIP 368
              LE            + +        L         L T +        +A       
Sbjct: 58  KKDLEIAEFSDIFTG-RVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDF 116

Query: 369 DWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSLPSNAFYI 428
                    L   N       G           +     +           +   N    
Sbjct: 117 LSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMK 176

Query: 429 DLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKI 488
           + +K   S  +          +    +   LL G      L+       N   +  S  +
Sbjct: 177 EWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLD-LQDNTFTHLGSSAL 235

Query: 489 PNSCGYLQKMLTLSLHHNNFSGELPSLL------KNFTHLRVVALEENSISGNIPAWIGE 542
             +      +  L L+    S    + +           L+ + L+ N I  +    +  
Sbjct: 236 AIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKT 295

Query: 543 SLL----NLVVLDLRSNRF 557
            +     +L+ L+L  NRF
Sbjct: 296 VIDEKMPDLLFLELNGNRF 314

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 42.2 bits (97), Expect = 2e-04
 Identities = 34/324 (10%), Positives = 83/324 (25%), Gaps = 28/324 (8%)

Query: 444 SFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGK----IPNSCGYLQKML 499
           S  G++L    +++      +    L+ + ++ + L+ N    +    +  +    + + 
Sbjct: 4   SIEGKSLKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLE 62

Query: 500 TLSLHHN---NFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNR 556
                         E+P  L+      +   + +++  +  A+   +   L+    +   
Sbjct: 63  IAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTP 122

Query: 557 FYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRT 616
                                         K  N     +     N              
Sbjct: 123 LEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 182

Query: 617 TMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLG---------GEVPEEIMDL 667
               +     +V    +    E+    GL    +L    L            +   +   
Sbjct: 183 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSW 242

Query: 668 VGLIGLNLSRNNLTGYITPKIGQ------LQSLDFLDLSRNQFSGGIPSSLSQV-----N 716
             L  L L+   L+      +           L  L L  N+       +L  V      
Sbjct: 243 PNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMP 302

Query: 717 RLSVMDLSHNNLSGKIPTGTQLQS 740
            L  ++L+ N  S +     +++ 
Sbjct: 303 DLLFLELNGNRFSEEDDVVDEIRE 326

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 37.9 bits (86), Expect = 0.004
 Identities = 39/366 (10%), Positives = 88/366 (24%), Gaps = 47/366 (12%)

Query: 149 KLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAGNL---DWISQLFSLRYLDLS 205
            L+   +        +  +L     ++ + L  N +         + I+    L   + S
Sbjct: 9   SLKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFS 67

Query: 206 SCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLT 265
                +  D + E  +        L Q  L+         S     P+ +   + + +  
Sbjct: 68  DIFTGRVKDEIPEALR-------LLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKH 120

Query: 266 ASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGV 325
             +     + + +    G  I       +    +  + K  +N   L  +    N LE  
Sbjct: 121 TPLEHLYLHNNGLGPQAGAKI-------ARALQELAVNKKAKNAPPLRSIICGRNRLENG 173

Query: 326 ISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSH 385
             + +   F   ++           +   +  +   G++        D          S 
Sbjct: 174 SMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSS 233

Query: 386 NQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSLPSNAFYIDLSKNKFSGPISFLCSF 445
                           L                           LS    +  +      
Sbjct: 234 ALAIALKSWPNLRELGL-----------------------NDCLLSARGAAAVVDAFSKL 270

Query: 446 SGQNLVYLDLSSNLLSGK----LPDCWL-QFNMLRILNLANNNFSGKIPNSCGYLQKMLT 500
               L  L L  N +       L      +   L  L L  N F  +  +    ++++ +
Sbjct: 271 ENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF-SEEDDVVDEIREVFS 329

Query: 501 LSLHHN 506
                 
Sbjct: 330 TRGRGE 335

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.9 bits (102), Expect = 3e-05
 Identities = 30/231 (12%), Positives = 67/231 (29%), Gaps = 22/231 (9%)

Query: 495 LQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRS 554
           L   + ++   +N +  +     +   +  ++     ++  I     + L NL+ L+L+ 
Sbjct: 18  LANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT-TIEGV--QYLNNLIGLELKD 72

Query: 555 NRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPS 614
           N+     P +         L  +       I    +  T                 +   
Sbjct: 73  NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132

Query: 615 RTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLN 674
              +    I     L      +Y       +     L++                L  L 
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLS-------------KLTTLK 179

Query: 675 LSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSH 725
              N ++      +  L +L  + L  NQ S   P  L+  + L ++ L++
Sbjct: 180 ADDNKISD--ISPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (93), Expect = 3e-04
 Identities = 21/143 (14%), Positives = 46/143 (32%), Gaps = 5/143 (3%)

Query: 454 DLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELP 513
           +L    +  +L     +        L         P+     Q +  +    ++ +  L 
Sbjct: 3   ELKPEQVE-QLKLIMSKRYDGSQQALDLKGLR-SDPDLVA--QNIDVVLNRRSSMAATLR 58

Query: 514 SLLKNFTHLRVVALEENSISGNIP-AWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQ 572
            + +N   L  + L  N +      + I +   NL +L+L  N    +          ++
Sbjct: 59  IIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLE 118

Query: 573 ILDLSLNNISGNIPKCFNNFTAM 595
            L L  N++S          +A+
Sbjct: 119 ELWLDGNSLSDTFRDQSTYISAI 141

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (86), Expect = 0.002
 Identities = 21/111 (18%), Positives = 36/111 (32%), Gaps = 2/111 (1%)

Query: 648 SVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKI-GQLQSLDFLDLSRNQFSG 706
            +  + +    +    +     L  L +       ++  +    L  L  L + ++    
Sbjct: 12  GLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF 70

Query: 707 GIPSSLSQVNRLSVMDLSHNNLSGKIPTGTQLQSFNASVYDGNPELCGLPL 757
             P +     RLS ++LS N L        Q  S    V  GNP  C   L
Sbjct: 71  VAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCAL 121

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (87), Expect = 0.002
 Identities = 26/239 (10%), Positives = 60/239 (25%), Gaps = 16/239 (6%)

Query: 287 SLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKW 346
           S R     ++++  EIP           L      L  +    F       K+       
Sbjct: 9   SNRVFLCQESKVT-EIPSDLPR--NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV 65

Query: 347 LQTQKHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPG 406
           L+  +     ++                 +  A  N  + Q        I  +  +    
Sbjct: 66  LEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIH 125

Query: 407 IDISSNHLEGPSPSLPSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPD 466
                      + ++ +      +  +  S  +    +   +        + L    L D
Sbjct: 126 SLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSD 185

Query: 467 CWLQFNM----------LRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSL 515
                 +            IL+++              L+K+   S ++     +LP+L
Sbjct: 186 NNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL---KKLPTL 241

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.3 bits (85), Expect = 0.004
 Identities = 29/171 (16%), Positives = 55/171 (32%), Gaps = 8/171 (4%)

Query: 287 SLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKW 346
           S+  +  +++++        Q +  +  L L GN L  +       N  +L +  +  K 
Sbjct: 47  SIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKD 104

Query: 347 LQTQKHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPG 406
           L + K    L   S   +            +L  L   +N++T                 
Sbjct: 105 LSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLS---RLTKLDTL 161

Query: 407 IDISSNHLEGPSPSLPSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSS 457
               +   +    +  +    + LSKN  S  +  L      NL  L+L S
Sbjct: 162 SLEDNQISDIVPLAGLTKLQNLYLSKNHISD-LRALAGLK--NLDVLELFS 209

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	850
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.95
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.95
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.92
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.91
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.91
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.91
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.89
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.88
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.83
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.81
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.78
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.77
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.74
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.72
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.72
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.71
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.7
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.7
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.68
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.67
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.66
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.65
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.5
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.5
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.44
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.43
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.42
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.42
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.4
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.4
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.24
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.21
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.2
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.2
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.3
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.24
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.7
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.34
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.07
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.68

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=3.5e-38  Score=335.90  Aligned_cols=293  Identities=28%  Similarity=0.408  Sum_probs=195.6

Q ss_pred             CCcHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCcc--ccceEecCCC--CCEEEEEcCCCCCcccchhhhhccCCCC
Q 048351           34 RCIEEERKALLKFKQGLVDEFGFLSSWGSEGEKKDCCN--WRGVRCSNQT--GHVKVLDLHGTGRVKVLDIQTRVMSGNA  109 (850)
Q Consensus        34 ~~~~~~~~~Ll~~k~~~~~~~~~l~~W~~~~~~~~~c~--w~gv~C~~~~--~~v~~l~L~~~~~l~~l~l~~~~~~~~~  109 (850)
                      -|.++||+||++||+++.+|. .+++|.   .++|||.  |+||+|++..  +||+.++|++                 +
T Consensus         2 ~c~~~e~~aLl~~k~~~~~~~-~l~sW~---~~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~-----------------~   60 (313)
T d1ogqa_           2 LCNPQDKQALLQIKKDLGNPT-TLSSWL---PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSG-----------------L   60 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCG-GGTTCC---TTSCTTTTCSTTEEECCSSSCCCEEEEEEEC-----------------C
T ss_pred             CCCHHHHHHHHHHHHHCCCCC-cCCCCC---CCCCCCCCcCCCeEEeCCCCcEEEEEEECCC-----------------C
Confidence            499999999999999998874 689997   5789994  9999998643  4899999998                 4


Q ss_pred             CCcc--cccccccCCCCCCEEeCCC-CCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCcccCCCCCCcEEEccCCCCCC
Q 048351          110 SLRG--TLNPALLKLHYLRHLDLSF-NNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLR  186 (850)
Q Consensus       110 ~l~g--~l~~~l~~l~~L~~L~Ls~-n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  186 (850)
                      +++|  .+|+++++|++|++|||++ |+++|. +|..++++++|++|+|++|++.+..|..+..+.+|+++++++|.+. 
T Consensus        61 ~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~-iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~-  138 (313)
T d1ogqa_          61 NLPKPYPIPSSLANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALS-  138 (313)
T ss_dssp             CCSSCEECCGGGGGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEE-
T ss_pred             CCCCCCCCChHHhcCccccccccccccccccc-cccccccccccchhhhccccccccccccccchhhhccccccccccc-
Confidence            6666  5789999999999999986 889885 9999999999999999999999988888889999999999988753 


Q ss_pred             CCCccccccCCCccEEeCCCCCCCCCcchhhhhcCCCCC-cEEEccCCCCCCCCCccccccccCCCCcccEEEccCCCCC
Q 048351          187 AGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSL-KTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLT  265 (850)
Q Consensus       187 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L-~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~  265 (850)
                      ...+..+.++++|+++++++|.+++.  +|..+..+..+ +.+++++|++++..+    ..+...  ..           
T Consensus       139 ~~~p~~l~~l~~L~~l~l~~n~l~~~--ip~~~~~l~~l~~~l~~~~n~l~~~~~----~~~~~l--~~-----------  199 (313)
T d1ogqa_         139 GTLPPSISSLPNLVGITFDGNRISGA--IPDSYGSFSKLFTSMTISRNRLTGKIP----PTFANL--NL-----------  199 (313)
T ss_dssp             SCCCGGGGGCTTCCEEECCSSCCEEE--CCGGGGCCCTTCCEEECCSSEEEEECC----GGGGGC--CC-----------
T ss_pred             ccCchhhccCcccceeeccccccccc--ccccccccccccccccccccccccccc----cccccc--cc-----------
Confidence            33344566677777777777666543  34444444443 445555555544433    122221  22           


Q ss_pred             CccchhhhcCCCCCCCCCCCCCCcEEEccCCcCCcccchhhhcCCCCcEEEccCCccccccccccccccccccCCCCCCh
Q 048351          266 ASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPK  345 (850)
Q Consensus       266 ~~~~~~l~~l~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~~~l~~~~p~  345 (850)
                                             ..++++.+...+.+|..+..+++++.+++++|.+.+.++.                 
T Consensus       200 -----------------------~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~-----------------  239 (313)
T d1ogqa_         200 -----------------------AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-----------------  239 (313)
T ss_dssp             -----------------------SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-----------------
T ss_pred             -----------------------cccccccccccccccccccccccccccccccccccccccc-----------------
Confidence                                   2455555555555555555555555555555555443322                 


Q ss_pred             hccCCCCCCEEEccCCcCCCCCchhHhhcCcCCCEEecccCcCcccCChhhhhhccCCcCEEEccCCc
Q 048351          346 WLQTQKHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNH  413 (850)
Q Consensus       346 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~l~~N~  413 (850)
                       +..+++|+.|++++|+++|.+|.++... ++|++|+|++|+++|.+|..  +.. .+++.+++++|+
T Consensus       240 -~~~~~~L~~L~Ls~N~l~g~iP~~l~~L-~~L~~L~Ls~N~l~g~iP~~--~~L-~~L~~l~l~~N~  302 (313)
T d1ogqa_         240 -VGLSKNLNGLDLRNNRIYGTLPQGLTQL-KFLHSLNVSFNNLCGEIPQG--GNL-QRFDVSAYANNK  302 (313)
T ss_dssp             -CCCCTTCCEEECCSSCCEECCCGGGGGC-TTCCEEECCSSEEEEECCCS--TTG-GGSCGGGTCSSS
T ss_pred             -cccccccccccCccCeecccCChHHhCC-CCCCEEECcCCcccccCCCc--ccC-CCCCHHHhCCCc
Confidence             3444555555555555555555555443 45555555555555555532  111 455555566665

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=2.4e-33  Score=298.20  Aligned_cols=259  Identities=34%  Similarity=0.543  Sum_probs=239.3

Q ss_pred             CCccEEEccCCCCCC--CCCcccccCCCCCEEEcCC-CcccccCCCccccccCccEEeccCCccccCCchhhcCCCCcCe
Q 048351          448 QNLVYLDLSSNLLSG--KLPDCWLQFNMLRILNLAN-NNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRV  524 (850)
Q Consensus       448 ~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  524 (850)
                      .+++.|+|++|.+.|  .+|..++++++|++|+|++ |+++|.+|..++++++|++|+|++|++.+..+..+..+.+|+.
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~  129 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcc
Confidence            368999999999988  4889999999999999997 8999999999999999999999999999999999999999999


Q ss_pred             eccccccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCc-ceeecccccCcccCCccccCcccCccccccCc
Q 048351          525 VALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADI-QILDLSLNNISGNIPKCFNNFTAMTQERSYNS  603 (850)
Q Consensus       525 L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L-~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~  603 (850)
                      +++++|.+.+.+|..+. .++.++++++++|.+.+.+|..+..+..+ +.+++++|++++..|..+.++..         
T Consensus       130 l~l~~N~~~~~~p~~l~-~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~---------  199 (313)
T d1ogqa_         130 LDFSYNALSGTLPPSIS-SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNL---------  199 (313)
T ss_dssp             EECCSSEEESCCCGGGG-GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCC---------
T ss_pred             cccccccccccCchhhc-cCcccceeecccccccccccccccccccccccccccccccccccccccccccc---------
Confidence            99999999999999987 69999999999999999999999888886 88999999999988877654322         


Q ss_pred             cccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccC
Q 048351          604 SAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGY  683 (850)
Q Consensus       604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~  683 (850)
                                                                 ..++++++...+.+|..++.+++++.+++++|.+++.
T Consensus       200 -------------------------------------------~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~  236 (313)
T d1ogqa_         200 -------------------------------------------AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFD  236 (313)
T ss_dssp             -------------------------------------------SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCB
T ss_pred             -------------------------------------------ccccccccccccccccccccccccccccccccccccc
Confidence                                                       4699999999999999999999999999999999987


Q ss_pred             CCccccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCCcCcccCCCCCcCCCcCccccCCCCCCCCCCCCCCC
Q 048351          684 ITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGKIPTGTQLQSFNASVYDGNPELCGLPLPSKC  761 (850)
Q Consensus       684 ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~lc~~~~~~~c  761 (850)
                      +| .++.+++|+.|||++|+++|.+|..|+++++|++|||++|+|+|.||..+.+..+....+.||+.+||.|++ .|
T Consensus       237 ~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l~~N~~l~g~plp-~c  312 (313)
T d1ogqa_         237 LG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-AC  312 (313)
T ss_dssp             GG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred             cc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCcccCCCCCHHHhCCCccccCCCCC-CC
Confidence            65 688999999999999999999999999999999999999999999999888899999999999999999875 66

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.95  E-value=3.3e-26  Score=250.27  Aligned_cols=340  Identities=22%  Similarity=0.277  Sum_probs=235.2

Q ss_pred             CcccEEEccCCCCCCccchhhhcCCCCCCCCCCCCCCcEEEccCCcCCcccchhhhcCCCCcEEEccCCccccccccccc
Q 048351          252 PSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFF  331 (850)
Q Consensus       252 ~~L~~L~Ls~N~l~~~~~~~l~~l~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~  331 (850)
                      .+|++|+++++.|+.           + +.+..+++|++|++++|++++..  .++++++|++|++++|++.+..+    
T Consensus        44 ~~l~~L~l~~~~I~~-----------l-~gl~~L~nL~~L~Ls~N~l~~l~--~l~~L~~L~~L~L~~n~i~~i~~----  105 (384)
T d2omza2          44 DQVTTLQADRLGIKS-----------I-DGVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADITP----  105 (384)
T ss_dssp             TTCCEEECCSSCCCC-----------C-TTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG----
T ss_pred             CCCCEEECCCCCCCC-----------c-cccccCCCCCEEeCcCCcCCCCc--cccCCcccccccccccccccccc----
Confidence            678899999888774           2 23567888999999999888643  38888899999999988875432    


Q ss_pred             cccccccCCCCCChhccCCCCCCEEEccCCcCCCCCchhHhhcCcCCCEEecccCcCcccCChhhhhhccCCcCEEEccC
Q 048351          332 SNFSYLKMGPHFPKWLQTQKHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISS  411 (850)
Q Consensus       332 ~~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~l~~  411 (850)
                                     +..+++|+.|+++++.+++..+...   ...+.......|.+....+... .   ........  
T Consensus       106 ---------------l~~l~~L~~L~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~-~---~~~~~~~~--  161 (384)
T d2omza2         106 ---------------LANLTNLTGLTLFNNQITDIDPLKN---LTNLNRLELSSNTISDISALSG-L---TSLQQLSF--  161 (384)
T ss_dssp             ---------------GTTCTTCCEEECCSSCCCCCGGGTT---CTTCSEEEEEEEEECCCGGGTT-C---TTCSEEEE--
T ss_pred             ---------------ccccccccccccccccccccccccc---cccccccccccccccccccccc-c---cccccccc--
Confidence                           5678888888888888876544322   2356666666665543322211 0   00000000  


Q ss_pred             CcCcccCCCCCCCCcEEEccCCcCcCccccccccCCCCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCCCc
Q 048351          412 NHLEGPSPSLPSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNS  491 (850)
Q Consensus       412 N~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~  491 (850)
                                       .......    ...  ...+.........|...  ....+..+++++.+++++|.+++..|  
T Consensus       162 -----------------~~~~~~~----~~~--~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~l~l~~n~i~~~~~--  214 (384)
T d2omza2         162 -----------------GNQVTDL----KPL--ANLTTLERLDISSNKVS--DISVLAKLTNLESLIATNNQISDITP--  214 (384)
T ss_dssp             -----------------EESCCCC----GGG--TTCTTCCEEECCSSCCC--CCGGGGGCTTCSEEECCSSCCCCCGG--
T ss_pred             -----------------ccccchh----hhh--ccccccccccccccccc--cccccccccccceeeccCCccCCCCc--
Confidence                             0000000    000  01133444555555443  34556778888888888888876544  


Q ss_pred             cccccCccEEeccCCccccCCchhhcCCCCcCeeccccccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCc
Q 048351          492 CGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADI  571 (850)
Q Consensus       492 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L  571 (850)
                      +...++|++|++++|+++. + ..+..+++|+.|++++|++++ ++. +. .+++|++|++++|++++..  .+..++.+
T Consensus       215 ~~~~~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~-~~~-~~-~~~~L~~L~l~~~~l~~~~--~~~~~~~l  287 (384)
T d2omza2         215 LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISN-LAP-LS-GLTKLTELKLGANQISNIS--PLAGLTAL  287 (384)
T ss_dssp             GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCC-CGG-GT-TCTTCSEEECCSSCCCCCG--GGTTCTTC
T ss_pred             ccccCCCCEEECCCCCCCC-c-chhhcccccchhccccCccCC-CCc-cc-ccccCCEeeccCcccCCCC--cccccccc
Confidence            4566788888888888874 3 357788888888888888874 443 33 5788899999888887554  36678888


Q ss_pred             ceeecccccCcccCCccccCcccCccccccCccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEc
Q 048351          572 QILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDL  651 (850)
Q Consensus       572 ~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L  651 (850)
                      +.+++++|.+++.  ..+..                                                   ++.++.|++
T Consensus       288 ~~l~~~~n~l~~~--~~~~~---------------------------------------------------~~~l~~L~l  314 (384)
T d2omza2         288 TNLELNENQLEDI--SPISN---------------------------------------------------LKNLTYLTL  314 (384)
T ss_dssp             SEEECCSSCCSCC--GGGGG---------------------------------------------------CTTCSEEEC
T ss_pred             ccccccccccccc--cccch---------------------------------------------------hcccCeEEC
Confidence            8898888888642  12222                                                   233488999


Q ss_pred             CCCCCCCCChhhhhccccCCeEecCCCcCccCCCccccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCC
Q 048351          652 SSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHN  726 (850)
Q Consensus       652 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N  726 (850)
                      ++|++++..  .+..+++|++|++++|++++ ++ .++++++|++||+++|++++.+|  +.++++|++|++++|
T Consensus       315 s~n~l~~l~--~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         315 YFNNISDIS--PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CSSCCSCCG--GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             CCCCCCCCc--ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            999998754  38889999999999999985 33 68999999999999999997765  889999999999987

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.95  E-value=4.5e-26  Score=249.17  Aligned_cols=357  Identities=22%  Similarity=0.277  Sum_probs=248.2

Q ss_pred             eCCCCCCCCCcchhhhhcCCCCCcEEEccCCCCCCCCCccccccccCCCCcccEEEccCCCCCCccchhhhcCCCCCCCC
Q 048351          203 DLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAP  282 (850)
Q Consensus       203 ~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~ip~~l  282 (850)
                      .++.+.+++..    ....+.+|++|+++++.++..      .++..+ ++|++|++++|++++.           |. +
T Consensus        28 ~l~~~~~~~~~----~~~~l~~l~~L~l~~~~I~~l------~gl~~L-~nL~~L~Ls~N~l~~l-----------~~-l   84 (384)
T d2omza2          28 VLGKTNVTDTV----SQTDLDQVTTLQADRLGIKSI------DGVEYL-NNLTQINFSNNQLTDI-----------TP-L   84 (384)
T ss_dssp             HTTCSSTTSEE----CHHHHTTCCEEECCSSCCCCC------TTGGGC-TTCCEEECCSSCCCCC-----------GG-G
T ss_pred             HhCCCCCCCcc----CHHHhCCCCEEECCCCCCCCc------cccccC-CCCCEEeCcCCcCCCC-----------cc-c
Confidence            45555555531    124567899999999998753      356666 9999999999999863           22 6


Q ss_pred             CCCCCCcEEEccCCcCCcccchhhhcCCCCcEEEccCCccccccccccccccccccCCCCCChhccCCCCCCEEEccCCc
Q 048351          283 GPMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAG  362 (850)
Q Consensus       283 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~  362 (850)
                      +++++|++|++++|++.+..|  ++++++|+.|++++|.+++..+                   ......+.......|.
T Consensus        85 ~~L~~L~~L~L~~n~i~~i~~--l~~l~~L~~L~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~  143 (384)
T d2omza2          85 KNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP-------------------LKNLTNLNRLELSSNT  143 (384)
T ss_dssp             TTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-------------------GTTCTTCSEEEEEEEE
T ss_pred             cCCcccccccccccccccccc--cccccccccccccccccccccc-------------------cccccccccccccccc
Confidence            789999999999999996543  8899999999999999886543                   2345667777777777


Q ss_pred             CCCCCchhHhhcCcCCCEEecccCcCcccCChhhhhhccCCcCEEEccCCcCcccCCCCCCCCcEEEccCCcCcCccccc
Q 048351          363 ISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSLPSNAFYIDLSKNKFSGPISFL  442 (850)
Q Consensus       363 l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~  442 (850)
                      +....+...... ............+.     .+ ... ........                     ..|.......  
T Consensus       144 l~~~~~~~~~~~-~~~~~~~~~~~~~~-----~~-~~~-~~~~~~~~---------------------~~~~~~~~~~--  192 (384)
T d2omza2         144 ISDISALSGLTS-LQQLSFGNQVTDLK-----PL-ANL-TTLERLDI---------------------SSNKVSDISV--  192 (384)
T ss_dssp             ECCCGGGTTCTT-CSEEEEEESCCCCG-----GG-TTC-TTCCEEEC---------------------CSSCCCCCGG--
T ss_pred             cccccccccccc-ccccccccccchhh-----hh-ccc-cccccccc---------------------cccccccccc--
Confidence            655443322111 11111111111111     11 000 11112222                     2222221111  


Q ss_pred             cccCCCCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCCCccccccCccEEeccCCccccCCchhhcCCCCc
Q 048351          443 CSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHL  522 (850)
Q Consensus       443 ~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L  522 (850)
                       ...+++++.+++++|.+++..|  +..+++|+.|++++|.++. + +.+..+++|+.|++++|.+++..+  +..+++|
T Consensus       193 -~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~L  265 (384)
T d2omza2         193 -LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNLAP--LSGLTKL  265 (384)
T ss_dssp             -GGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTC
T ss_pred             -cccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCC-c-chhhcccccchhccccCccCCCCc--ccccccC
Confidence             1134678888888888886544  4567788888888888874 2 357788888999999988886443  7788889


Q ss_pred             CeeccccccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccCcccCCccccCcccCccccccC
Q 048351          523 RVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYN  602 (850)
Q Consensus       523 ~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~  602 (850)
                      ++|++++|+++ .++.. . .++.++.+++++|.+++.  ..+..+++++.|++++|++++..+  +..++         
T Consensus       266 ~~L~l~~~~l~-~~~~~-~-~~~~l~~l~~~~n~l~~~--~~~~~~~~l~~L~ls~n~l~~l~~--l~~l~---------  329 (384)
T d2omza2         266 TELKLGANQIS-NISPL-A-GLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDISP--VSSLT---------  329 (384)
T ss_dssp             SEEECCSSCCC-CCGGG-T-TCTTCSEEECCSSCCSCC--GGGGGCTTCSEEECCSSCCSCCGG--GGGCT---------
T ss_pred             CEeeccCcccC-CCCcc-c-cccccccccccccccccc--cccchhcccCeEECCCCCCCCCcc--cccCC---------
Confidence            99999999887 45432 2 588899999999998753  347788899999999999886432  33333         


Q ss_pred             ccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCcc
Q 048351          603 SSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTG  682 (850)
Q Consensus       603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  682 (850)
                                                                +|+.|++++|++++ ++ .++++++|++|++++|++++
T Consensus       330 ------------------------------------------~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~  365 (384)
T d2omza2         330 ------------------------------------------KLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISD  365 (384)
T ss_dssp             ------------------------------------------TCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCB
T ss_pred             ------------------------------------------CCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCC
Confidence                                                      34889999999985 44 68999999999999999997


Q ss_pred             CCCccccccCCCCeeeCCCCc
Q 048351          683 YITPKIGQLQSLDFLDLSRNQ  703 (850)
Q Consensus       683 ~ip~~l~~l~~L~~L~Ls~N~  703 (850)
                      .+|  ++++++|++|+|++|.
T Consensus       366 l~~--l~~l~~L~~L~L~~Na  384 (384)
T d2omza2         366 LTP--LANLTRITQLGLNDQA  384 (384)
T ss_dssp             CGG--GTTCTTCSEEECCCEE
T ss_pred             Chh--hccCCCCCEeeCCCCc
Confidence            654  8999999999999983

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=1.2e-23  Score=221.85  Aligned_cols=271  Identities=19%  Similarity=0.211  Sum_probs=178.9

Q ss_pred             CcCEEEccCCcCcccCCCCCCCCcEEEccCCcCcCccccccccCCCCccEEEccCCCCCCCCCcccccCCCCCEEEcCCC
Q 048351          403 ESPGIDISSNHLEGPSPSLPSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANN  482 (850)
Q Consensus       403 ~L~~L~l~~N~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N  482 (850)
                      ..+.++.++++++..++..++++++|++++|+++...+... ..+++|++|++++|.+....|..|.++++|++|++++|
T Consensus        11 ~~~~~~C~~~~L~~lP~~l~~~l~~L~Ls~N~i~~l~~~~f-~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n   89 (305)
T d1xkua_          11 HLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDF-KNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN   89 (305)
T ss_dssp             ETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTT-TTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred             cCCEEEecCCCCCccCCCCCCCCCEEECcCCcCCCcChhHh-hccccccccccccccccccchhhhhCCCccCEecccCC
Confidence            34456666666665554445666777777776665443222 24467777777777777666777777777777777777


Q ss_pred             cccccCCCccccccCccEEeccCCccccCCchhhcCCCCcCeecccccccee--ecchhHHhcCCCCCEEEccCCccccc
Q 048351          483 NFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISG--NIPAWIGESLLNLVVLDLRSNRFYGK  560 (850)
Q Consensus       483 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~--~ip~~~~~~l~~L~~L~L~~N~l~~~  560 (850)
                      +++ .+|..+  ...++.|++.+|.+.+..+..+.....+..++...|....  ..+.. +..+++|+++++++|.++ .
T Consensus        90 ~l~-~l~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~-~~~l~~L~~l~l~~n~l~-~  164 (305)
T d1xkua_          90 QLK-ELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGA-FQGMKKLSYIRIADTNIT-T  164 (305)
T ss_dssp             CCS-BCCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTG-GGGCTTCCEEECCSSCCC-S
T ss_pred             ccC-cCccch--hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccc-cccccccCccccccCCcc-c
Confidence            777 344432  3467777777777776666666667777777777665431  12222 235677777777777776 3


Q ss_pred             cCcCcCCCCCcceeecccccCcccCCccccCcccCccccccCccccccccccCCCcccCccceEeeEEEEEecCcccccc
Q 048351          561 IPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYK  640 (850)
Q Consensus       561 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  640 (850)
                      +|..+  +++|+.|++++|.+++..+..+.+++.+                                             
T Consensus       165 l~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~l---------------------------------------------  197 (305)
T d1xkua_         165 IPQGL--PPSLTELHLDGNKITKVDAASLKGLNNL---------------------------------------------  197 (305)
T ss_dssp             CCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTC---------------------------------------------
T ss_pred             cCccc--CCccCEEECCCCcCCCCChhHhhccccc---------------------------------------------
Confidence            44332  4677777777777776666655554443                                             


Q ss_pred             cccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCCCccccccCCCCeeeCCCCcCcccCcccc------cC
Q 048351          641 NTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSL------SQ  714 (850)
Q Consensus       641 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l------~~  714 (850)
                            +.|++++|++++..+..+.++++|++|+|++|+|+ .+|.+|.++++|++|+|++|+|+......|      ..
T Consensus       198 ------~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~  270 (305)
T d1xkua_         198 ------AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTK  270 (305)
T ss_dssp             ------CEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTT
T ss_pred             ------cccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccCccChhhccCcchhcc
Confidence                  67777888887777777777788888888888877 456777778888888888888775443333      34


Q ss_pred             CCCCCEEEcCCCcCc-ccCC
Q 048351          715 VNRLSVMDLSHNNLS-GKIP  733 (850)
Q Consensus       715 l~~L~~L~ls~N~l~-g~iP  733 (850)
                      +.+|+.|++++|+++ +.+|
T Consensus       271 ~~~L~~L~L~~N~~~~~~~~  290 (305)
T d1xkua_         271 KASYSGVSLFSNPVQYWEIQ  290 (305)
T ss_dssp             SCCCSEEECCSSSSCGGGSC
T ss_pred             cCCCCEEECCCCcCccCcCC
Confidence            567777888888774 3444

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.1e-24  Score=227.21  Aligned_cols=228  Identities=18%  Similarity=0.122  Sum_probs=188.0

Q ss_pred             cEEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCCCccccccCccEEeccCCccccCCchhhcCCCCcCeeccc-c
Q 048351          451 VYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALE-E  529 (850)
Q Consensus       451 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~-~  529 (850)
                      ..++.+++.++ .+|..+.  +++++|+|++|+|++..+.+|.++++|++|++++|++.+..+..+..++.++.++.. .
T Consensus        14 ~~v~c~~~~L~-~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~   90 (284)
T d1ozna_          14 VTTSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (284)
T ss_dssp             CEEECCSSCCS-SCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             eEEEcCCCCCC-ccCCCCC--CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccc
Confidence            34566777776 5565443  567888888888886666778888888999998888888777888888888888765 4


Q ss_pred             ccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccCcccCCccccCcccCccccccCccccccc
Q 048351          530 NSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFS  609 (850)
Q Consensus       530 N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~  609 (850)
                      |.++ .++...+.++++|++|++++|.+....+..+...++|+.+++++|++++..+..|..++.+              
T Consensus        91 ~~~~-~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L--------------  155 (284)
T d1ozna_          91 AQLR-SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNL--------------  155 (284)
T ss_dssp             TTCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC--------------
T ss_pred             cccc-cccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccch--------------
Confidence            4555 6655555578899999999999887777778888899999999999987666666655554              


Q ss_pred             cccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCCCcccc
Q 048351          610 YAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIG  689 (850)
Q Consensus       610 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~  689 (850)
                                                           +.|++++|++++..+..|.++++|+.+++++|++++..|..|.
T Consensus       156 -------------------------------------~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~  198 (284)
T d1ozna_         156 -------------------------------------THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFR  198 (284)
T ss_dssp             -------------------------------------CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTT
T ss_pred             -------------------------------------hhcccccCcccccchhhhccccccchhhhhhccccccChhHhh
Confidence                                                 7899999999988888999999999999999999998899999


Q ss_pred             ccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCCcCcccCC
Q 048351          690 QLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGKIP  733 (850)
Q Consensus       690 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP  733 (850)
                      ++++|++||+++|++++..|..|..+++|++|++++|++.+..+
T Consensus       199 ~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~  242 (284)
T d1ozna_         199 DLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR  242 (284)
T ss_dssp             TCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred             hhhhcccccccccccccccccccccccccCEEEecCCCCCCCcc
Confidence            99999999999999999999999999999999999999987644

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.91  E-value=8.3e-23  Score=215.29  Aligned_cols=266  Identities=22%  Similarity=0.266  Sum_probs=214.3

Q ss_pred             CCcEEEccCCcCcCccccccccCCCCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCCCccccccCccEEec
Q 048351          424 NAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSL  503 (850)
Q Consensus       424 ~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  503 (850)
                      ..+.+|-+++.++..++.+.    +++++|+|++|+++...+..|.++++|++|++++|.+....|..|.+++.|++|++
T Consensus        11 ~~~~~~C~~~~L~~lP~~l~----~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l   86 (305)
T d1xkua_          11 HLRVVQCSDLGLEKVPKDLP----PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL   86 (305)
T ss_dssp             ETTEEECTTSCCCSCCCSCC----TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             cCCEEEecCCCCCccCCCCC----CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecc
Confidence            34567777777776544322    57999999999998666678999999999999999999877888999999999999


Q ss_pred             cCCccccCCchhhcCCCCcCeeccccccceeecchhHHhcCCCCCEEEccCCccc--cccCcCcCCCCCcceeecccccC
Q 048351          504 HHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFY--GKIPFQLCHLADIQILDLSLNNI  581 (850)
Q Consensus       504 s~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~--~~~p~~l~~l~~L~~L~Ls~N~l  581 (850)
                      ++|+++ .+|..+  ...++.|++.+|.+. .++...+.....++.++...|...  ...+..+..+++|+.+++++|.+
T Consensus        87 ~~n~l~-~l~~~~--~~~l~~L~~~~n~l~-~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l  162 (305)
T d1xkua_          87 SKNQLK-ELPEKM--PKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI  162 (305)
T ss_dssp             CSSCCS-BCCSSC--CTTCCEEECCSSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC
T ss_pred             cCCccC-cCccch--hhhhhhhhccccchh-hhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCc
Confidence            999998 455433  457889999999998 667666656788888988887543  34456678888999999999988


Q ss_pred             cccCCccccCcccCccccccCccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCCh
Q 048351          582 SGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVP  661 (850)
Q Consensus       582 ~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p  661 (850)
                      +. +|..+                                                     +++++.|++++|..++..+
T Consensus       163 ~~-l~~~~-----------------------------------------------------~~~L~~L~l~~n~~~~~~~  188 (305)
T d1xkua_         163 TT-IPQGL-----------------------------------------------------PPSLTELHLDGNKITKVDA  188 (305)
T ss_dssp             CS-CCSSC-----------------------------------------------------CTTCSEEECTTSCCCEECT
T ss_pred             cc-cCccc-----------------------------------------------------CCccCEEECCCCcCCCCCh
Confidence            62 33221                                                     2234899999999999999


Q ss_pred             hhhhccccCCeEecCCCcCccCCCccccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCCcCcccCCCCC-----
Q 048351          662 EEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGKIPTGT-----  736 (850)
Q Consensus       662 ~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~-----  736 (850)
                      ..+.+++.++.|++++|++++..+..+.++++|++|+|++|+|+ .+|..|..+++|++|++++|+++ .|+...     
T Consensus       189 ~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~-~i~~~~f~~~~  266 (305)
T d1xkua_         189 ASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS-AIGSNDFCPPG  266 (305)
T ss_dssp             GGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCC-CCCTTSSSCSS
T ss_pred             hHhhccccccccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccC-ccChhhccCcc
Confidence            99999999999999999999998999999999999999999998 56889999999999999999998 555432     


Q ss_pred             ---cCCCcCccccCCCCCCC
Q 048351          737 ---QLQSFNASVYDGNPELC  753 (850)
Q Consensus       737 ---~~~~~~~~~~~gN~~lc  753 (850)
                         ...++....+.|||+-+
T Consensus       267 ~~~~~~~L~~L~L~~N~~~~  286 (305)
T d1xkua_         267 YNTKKASYSGVSLFSNPVQY  286 (305)
T ss_dssp             CCTTSCCCSEEECCSSSSCG
T ss_pred             hhcccCCCCEEECCCCcCcc
Confidence               22344455688888765

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=6.2e-24  Score=221.42  Aligned_cols=233  Identities=20%  Similarity=0.208  Sum_probs=129.2

Q ss_pred             CccEEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCCCccccccCccEEecc-CCccccCCchhhcCCCCcCeecc
Q 048351          449 NLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLH-HNNFSGELPSLLKNFTHLRVVAL  527 (850)
Q Consensus       449 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls-~N~l~~~~p~~l~~l~~L~~L~L  527 (850)
                      ++++|+|++|+|++..+.+|.++++|++|++++|++.+..+..+..+..++.++.. .|.++...+..|.++++|++|++
T Consensus        33 ~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l  112 (284)
T d1ozna_          33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL  112 (284)
T ss_dssp             TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEec
Confidence            45556666666554444555666666666666666665555555555555555543 34444444555666666666666


Q ss_pred             ccccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccCcccCCccccCcccCccccccCccccc
Q 048351          528 EENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAIT  607 (850)
Q Consensus       528 ~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~  607 (850)
                      ++|.+. .++...+...++|+.+++++|.+++..+..|..+++|+.|++++|++++..+..|.++++|            
T Consensus       113 ~~n~~~-~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L------------  179 (284)
T d1ozna_         113 DRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSL------------  179 (284)
T ss_dssp             TTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC------------
T ss_pred             CCcccc-cccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhcccccc------------
Confidence            666655 3333333345566666666666665555555566666666666666665555555444443            


Q ss_pred             cccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCCCcc
Q 048351          608 FSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPK  687 (850)
Q Consensus       608 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~  687 (850)
                                                             +.+++++|++++..|..|..+++|+.|++++|++++..|..
T Consensus       180 ---------------------------------------~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~  220 (284)
T d1ozna_         180 ---------------------------------------DRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEA  220 (284)
T ss_dssp             ---------------------------------------CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHH
T ss_pred             ---------------------------------------chhhhhhccccccChhHhhhhhhcccccccccccccccccc
Confidence                                                   55666666666666666666666666666666666655556


Q ss_pred             ccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCCcCcccCCC
Q 048351          688 IGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGKIPT  734 (850)
Q Consensus       688 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~  734 (850)
                      |+.+++|++|++++|.+.+.-+.. .-...++.+....+++.+..|.
T Consensus       221 ~~~~~~L~~L~l~~N~l~C~C~~~-~l~~~l~~~~~~~~~~~C~~p~  266 (284)
T d1ozna_         221 LAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQ  266 (284)
T ss_dssp             HTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESG
T ss_pred             cccccccCEEEecCCCCCCCccch-HHHHHHHhCcCCCCceEeCCch
Confidence            666666666666666665432211 0011233444455555555443

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=8.5e-23  Score=210.28  Aligned_cols=203  Identities=22%  Similarity=0.255  Sum_probs=164.0

Q ss_pred             cCCCCCEEEcCCCcccccCCCccccccCccEEeccCCccccCCchhhcCCCCcCeeccccccceeecchhHHhcCCCCCE
Q 048351          470 QFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVV  549 (850)
Q Consensus       470 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~  549 (850)
                      +...+..++.+++.++ .+|+.+.  +++++|+|++|++++..+..|.++++|++|+|++|+++ .+|.. . .+++|++
T Consensus         8 ~~~~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~~~-~-~l~~L~~   81 (266)
T d1p9ag_           8 KVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD-G-TLPVLGT   81 (266)
T ss_dssp             CSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECC-S-CCTTCCE
T ss_pred             ccCCCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccc-ccccc-c-ccccccc
Confidence            3455666777777777 4565553  46788888888887666677888888888888888887 66643 2 5888999


Q ss_pred             EEccCCccccccCcCcCCCCCcceeecccccCcccCCccccCcccCccccccCccccccccccCCCcccCccceEeeEEE
Q 048351          550 LDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVL  629 (850)
Q Consensus       550 L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  629 (850)
                      |++++|++++ .+..+..+++|+.|++++|.+.+..+..+..+..+                                  
T Consensus        82 L~Ls~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l----------------------------------  126 (266)
T d1p9ag_          82 LDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL----------------------------------  126 (266)
T ss_dssp             EECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTC----------------------------------
T ss_pred             cccccccccc-cccccccccccccccccccccceeecccccccccc----------------------------------
Confidence            9999998874 46678888999999999998876555555444433                                  


Q ss_pred             EEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCCCccccccCCCCeeeCCCCcCcccCc
Q 048351          630 LTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIP  709 (850)
Q Consensus       630 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p  709 (850)
                                       +.|++++|.+++..+..+..++.|+.|++++|++++..+..|+.+++|++|||++|+|+ .+|
T Consensus       127 -----------------~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp  188 (266)
T d1p9ag_         127 -----------------QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIP  188 (266)
T ss_dssp             -----------------CEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCC
T ss_pred             -----------------ccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCc-ccC
Confidence                             78999999999888888888999999999999999888888999999999999999999 788


Q ss_pred             ccccCCCCCCEEEcCCCcCccc
Q 048351          710 SSLSQVNRLSVMDLSHNNLSGK  731 (850)
Q Consensus       710 ~~l~~l~~L~~L~ls~N~l~g~  731 (850)
                      ..+..+++|++|+|++|++.+.
T Consensus       189 ~~~~~~~~L~~L~L~~Np~~Cd  210 (266)
T d1p9ag_         189 KGFFGSHLLPFAFLHGNPWLCN  210 (266)
T ss_dssp             TTTTTTCCCSEEECCSCCBCCS
T ss_pred             hhHCCCCCCCEEEecCCCCCCC
Confidence            8888999999999999998754

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=5.1e-22  Score=204.35  Aligned_cols=206  Identities=22%  Similarity=0.263  Sum_probs=175.4

Q ss_pred             ccccCccEEeccCCccccCCchhhcCCCCcCeeccccccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcc
Q 048351          493 GYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQ  572 (850)
Q Consensus       493 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~  572 (850)
                      .....+.+.+.++++++ .+|..+.  +++++|+|++|+|+ .+|...+.++++|++|+|++|+++. +| .++.+++|+
T Consensus         7 ~~~~~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~-~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~   80 (266)
T d1p9ag_           7 SKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLG   80 (266)
T ss_dssp             ECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCS-EEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCC
T ss_pred             cccCCCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCC-CcCHHHhhccccccccccccccccc-cc-ccccccccc
Confidence            34566778899999999 5776654  57999999999998 6776655589999999999999985 44 357899999


Q ss_pred             eeecccccCcccCCccccCcccCccccccCccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcC
Q 048351          573 ILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLS  652 (850)
Q Consensus       573 ~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls  652 (850)
                      +|+|++|++++ .+..+.+++.|                                                   +.|+++
T Consensus        81 ~L~Ls~N~l~~-~~~~~~~l~~L---------------------------------------------------~~L~l~  108 (266)
T d1p9ag_          81 TLDLSHNQLQS-LPLLGQTLPAL---------------------------------------------------TVLDVS  108 (266)
T ss_dssp             EEECCSSCCSS-CCCCTTTCTTC---------------------------------------------------CEEECC
T ss_pred             ccccccccccc-ccccccccccc---------------------------------------------------cccccc
Confidence            99999999984 34455444444                                                   899999


Q ss_pred             CCCCCCCChhhhhccccCCeEecCCCcCccCCCccccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCCcCcccC
Q 048351          653 SNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGKI  732 (850)
Q Consensus       653 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~i  732 (850)
                      +|++.+..+..+..+.+++.|++++|.+++..+..+..+++|+.|++++|++++..+..|..+++|++|||++|+|+ .|
T Consensus       109 ~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~l  187 (266)
T d1p9ag_         109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TI  187 (266)
T ss_dssp             SSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CC
T ss_pred             ccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCc-cc
Confidence            99999888889999999999999999999888888999999999999999999999999999999999999999999 78


Q ss_pred             CCC-CcCCCcCccccCCCCCCCCCCC
Q 048351          733 PTG-TQLQSFNASVYDGNPELCGLPL  757 (850)
Q Consensus       733 P~~-~~~~~~~~~~~~gN~~lc~~~~  757 (850)
                      |.+ .....+....+.|||+.|+|.+
T Consensus       188 p~~~~~~~~L~~L~L~~Np~~CdC~~  213 (266)
T d1p9ag_         188 PKGFFGSHLLPFAFLHGNPWLCNCEI  213 (266)
T ss_dssp             CTTTTTTCCCSEEECCSCCBCCSGGG
T ss_pred             ChhHCCCCCCCEEEecCCCCCCCcch
Confidence            865 3455666777999999999853

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.83  E-value=2.2e-18  Score=184.88  Aligned_cols=315  Identities=26%  Similarity=0.329  Sum_probs=191.6

Q ss_pred             CCCCEEeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCCccccccCCCccEE
Q 048351          123 HYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAGNLDWISQLFSLRYL  202 (850)
Q Consensus       123 ~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L  202 (850)
                      .++++|||++|.++  .+|+.   .++|++|+|++|+++ .+|..+   .+|++|++++|++.....   +  .+.|++|
T Consensus        38 ~~l~~LdLs~~~L~--~lp~~---~~~L~~L~Ls~N~l~-~lp~~~---~~L~~L~l~~n~l~~l~~---l--p~~L~~L  103 (353)
T d1jl5a_          38 RQAHELELNNLGLS--SLPEL---PPHLESLVASCNSLT-ELPELP---QSLKSLLVDNNNLKALSD---L--PPLLEYL  103 (353)
T ss_dssp             HTCSEEECTTSCCS--CCCSC---CTTCSEEECCSSCCS-SCCCCC---TTCCEEECCSSCCSCCCS---C--CTTCCEE
T ss_pred             cCCCEEEeCCCCCC--CCCCC---CCCCCEEECCCCCCc-ccccch---hhhhhhhhhhcccchhhh---h--ccccccc
Confidence            46899999999998  47864   578999999999998 677654   578999999998643322   1  1469999


Q ss_pred             eCCCCCCCCCcchhhhhcCCCCCcEEEccCCCCCCCCCccccccccCCCCcccEEEccCCCCCCccchhhhcCCCCCCCC
Q 048351          203 DLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAP  282 (850)
Q Consensus       203 ~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~ip~~l  282 (850)
                      ++++|.++..+    .++.+++|++|++++|.+...+.     .    ...+..+.+.++....            +..+
T Consensus       104 ~L~~n~l~~lp----~~~~l~~L~~L~l~~~~~~~~~~-----~----~~~l~~l~~~~~~~~~------------~~~l  158 (353)
T d1jl5a_         104 GVSNNQLEKLP----ELQNSSFLKIIDVDNNSLKKLPD-----L----PPSLEFIAAGNNQLEE------------LPEL  158 (353)
T ss_dssp             ECCSSCCSSCC----CCTTCTTCCEEECCSSCCSCCCC-----C----CTTCCEEECCSSCCSS------------CCCC
T ss_pred             ccccccccccc----chhhhccceeecccccccccccc-----c----cccccchhhccccccc------------cccc
Confidence            99999988753    35678899999998888775543     1    1567777777665542            2345


Q ss_pred             CCCCCCcEEEccCCcCCcccchhhhcCCCCcEEEccCCccccccccccccccccccCCCCCChhccCCCCCCEEEccCCc
Q 048351          283 GPMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAG  362 (850)
Q Consensus       283 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~  362 (850)
                      ..++.++.+++++|.+... +.   .....+.+...++.+... +                  .+..++.|+.+++++|.
T Consensus       159 ~~l~~l~~L~l~~n~~~~~-~~---~~~~~~~l~~~~~~~~~~-~------------------~~~~l~~L~~l~l~~n~  215 (353)
T d1jl5a_         159 QNLPFLTAIYADNNSLKKL-PD---LPLSLESIVAGNNILEEL-P------------------ELQNLPFLTTIYADNNL  215 (353)
T ss_dssp             TTCTTCCEEECCSSCCSSC-CC---CCTTCCEEECCSSCCSSC-C------------------CCTTCTTCCEEECCSSC
T ss_pred             cccccceeccccccccccc-cc---cccccccccccccccccc-c------------------ccccccccccccccccc
Confidence            6677888888888877632 21   122344555554443321 1                  14556777777777776


Q ss_pred             CCCCCchhHhhcCcCCCEEecccCcCcccCChhhhhhccCCcCEEEccCCcCcccCCCCCCCCcEEEccCCcCcCccccc
Q 048351          363 ISDSIPDWFSDTSHKLADLNFSHNQMTGRFPNYISSMFILESPGIDISSNHLEGPSPSLPSNAFYIDLSKNKFSGPISFL  442 (850)
Q Consensus       363 l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~  442 (850)
                      .... +..    ..++..+.+.++.+... +                          .....+...++..+.+.+.... 
T Consensus       216 ~~~~-~~~----~~~l~~~~~~~~~~~~~-~--------------------------~~~~~l~~~~~~~~~~~~l~~l-  262 (353)
T d1jl5a_         216 LKTL-PDL----PPSLEALNVRDNYLTDL-P--------------------------ELPQSLTFLDVSENIFSGLSEL-  262 (353)
T ss_dssp             CSSC-CSC----CTTCCEEECCSSCCSCC-C--------------------------CCCTTCCEEECCSSCCSEESCC-
T ss_pred             cccc-ccc----ccccccccccccccccc-c--------------------------cccccccccccccccccccccc-
Confidence            5432 221    23456666666655421 1                          1122333333333333221110 


Q ss_pred             cccCCCCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCCCccccccCccEEeccCCccccCCchhhcCCCCc
Q 048351          443 CSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHL  522 (850)
Q Consensus       443 ~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L  522 (850)
                          .......++..+.+.+.    ...+++|++|++++|+++ .+|..   +++|+.|++++|+++ .+|..   +++|
T Consensus       263 ----~~~~~~~~~~~~~~~~~----~~~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N~L~-~l~~~---~~~L  326 (353)
T d1jl5a_         263 ----PPNLYYLNASSNEIRSL----CDLPPSLEELNVSNNKLI-ELPAL---PPRLERLIASFNHLA-EVPEL---PQNL  326 (353)
T ss_dssp             ----CTTCCEEECCSSCCSEE----CCCCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-CCCCC---CTTC
T ss_pred             ----cchhcccccccCccccc----cccCCCCCEEECCCCccC-ccccc---cCCCCEEECCCCcCC-ccccc---cCCC
Confidence                02344555555555422    223456777777777776 45543   456777777777776 45532   4567


Q ss_pred             CeeccccccceeecchhHHhcCCCCCEEEcc
Q 048351          523 RVVALEENSISGNIPAWIGESLLNLVVLDLR  553 (850)
Q Consensus       523 ~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~  553 (850)
                      ++|++++|+++ .+|..    ..+|+.|.+.
T Consensus       327 ~~L~L~~N~L~-~lp~~----~~~L~~L~~~  352 (353)
T d1jl5a_         327 KQLHVEYNPLR-EFPDI----PESVEDLRMN  352 (353)
T ss_dssp             CEEECCSSCCS-SCCCC----CTTCCEEECC
T ss_pred             CEEECcCCcCC-CCCcc----ccccCeeECc
Confidence            77777777776 66642    3356666553

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.81  E-value=2.4e-17  Score=176.64  Aligned_cols=314  Identities=23%  Similarity=0.265  Sum_probs=190.4

Q ss_pred             CCCCEEeCCCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCCccccccCCCccEEeCCCCCCCCCcchhhhhcCCCCCcE
Q 048351          148 SKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAGNLDWISQLFSLRYLDLSSCNLSKSTDWLQEVDKIPSLKT  227 (850)
Q Consensus       148 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~  227 (850)
                      .+|++|||+++.++ .+|+.   .++|++|++++|++....  .   .+.+|+.|++++|+++.++.++      +.|++
T Consensus        38 ~~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~~lp--~---~~~~L~~L~l~~n~l~~l~~lp------~~L~~  102 (353)
T d1jl5a_          38 RQAHELELNNLGLS-SLPEL---PPHLESLVASCNSLTELP--E---LPQSLKSLLVDNNNLKALSDLP------PLLEY  102 (353)
T ss_dssp             HTCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCSSCC--C---CCTTCCEEECCSSCCSCCCSCC------TTCCE
T ss_pred             cCCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCcccc--c---chhhhhhhhhhhcccchhhhhc------ccccc
Confidence            47889999999988 47753   467888999988864332  1   2457788888888776653321      34666


Q ss_pred             EEccCCCCCCCCCccccccccCCCCcccEEEccCCCCCCccchhhhcCCCCCCCCCCCCCCcEEEccCCcCCcccchhhh
Q 048351          228 LYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSDNELDGEIPKFFQ  307 (850)
Q Consensus       228 L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~  307 (850)
                      |++++|.+...+.      ...+ ++|+.|++++|.+...           |   .....+..+.+..+....  +..+.
T Consensus       103 L~L~~n~l~~lp~------~~~l-~~L~~L~l~~~~~~~~-----------~---~~~~~l~~l~~~~~~~~~--~~~l~  159 (353)
T d1jl5a_         103 LGVSNNQLEKLPE------LQNS-SFLKIIDVDNNSLKKL-----------P---DLPPSLEFIAAGNNQLEE--LPELQ  159 (353)
T ss_dssp             EECCSSCCSSCCC------CTTC-TTCCEEECCSSCCSCC-----------C---CCCTTCCEEECCSSCCSS--CCCCT
T ss_pred             ccccccccccccc------hhhh-ccceeecccccccccc-----------c---cccccccchhhccccccc--ccccc
Confidence            6666666654432      2223 5566666666555431           1   112344455554444331  22344


Q ss_pred             cCCCCcEEEccCCccccccccccccccccccCCCCCChhccCCCCCCEEEccCCcCCCCCchhHhhcCcCCCEEecccCc
Q 048351          308 NMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLDISSAGISDSIPDWFSDTSHKLADLNFSHNQ  387 (850)
Q Consensus       308 ~l~~L~~L~L~~N~l~~~~~~~~~~~l~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~N~  387 (850)
                      .++.++.+++++|.....                                         ...     ....+.+...++.
T Consensus       160 ~l~~l~~L~l~~n~~~~~-----------------------------------------~~~-----~~~~~~l~~~~~~  193 (353)
T d1jl5a_         160 NLPFLTAIYADNNSLKKL-----------------------------------------PDL-----PLSLESIVAGNNI  193 (353)
T ss_dssp             TCTTCCEEECCSSCCSSC-----------------------------------------CCC-----CTTCCEEECCSSC
T ss_pred             ccccceeccccccccccc-----------------------------------------ccc-----ccccccccccccc
Confidence            455555555555544321                                         110     0123333333333


Q ss_pred             CcccCChhhhhhccCCcCEEEccCCcCcccCCCCCCCCcEEEccCCcCcCccccccccCCCCccEEEccCCCCCCCCCcc
Q 048351          388 MTGRFPNYISSMFILESPGIDISSNHLEGPSPSLPSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDC  467 (850)
Q Consensus       388 l~~~~p~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~  467 (850)
                      +. .++..  ... ..++.+++++|.... .+....++..+.+..+.+......     ...+...++..+.+.+.    
T Consensus       194 ~~-~~~~~--~~l-~~L~~l~l~~n~~~~-~~~~~~~l~~~~~~~~~~~~~~~~-----~~~l~~~~~~~~~~~~l----  259 (353)
T d1jl5a_         194 LE-ELPEL--QNL-PFLTTIYADNNLLKT-LPDLPPSLEALNVRDNYLTDLPEL-----PQSLTFLDVSENIFSGL----  259 (353)
T ss_dssp             CS-SCCCC--TTC-TTCCEEECCSSCCSS-CCSCCTTCCEEECCSSCCSCCCCC-----CTTCCEEECCSSCCSEE----
T ss_pred             cc-ccccc--ccc-ccccccccccccccc-cccccccccccccccccccccccc-----ccccccccccccccccc----
Confidence            32 22221  111 556666666665543 344566777788888877654332     25677888887776532    


Q ss_pred             cccC-CCCCEEEcCCCcccccCCCccccccCccEEeccCCccccCCchhhcCCCCcCeeccccccceeecchhHHhcCCC
Q 048351          468 WLQF-NMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLN  546 (850)
Q Consensus       468 ~~~l-~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~  546 (850)
                       ..+ ......++..+.+.+. +   ..+++|++|++++|+++ .+|.   .+++|+.|++++|+|+ .+|.    .+++
T Consensus       260 -~~l~~~~~~~~~~~~~~~~~-~---~~~~~L~~L~Ls~N~l~-~lp~---~~~~L~~L~L~~N~L~-~l~~----~~~~  325 (353)
T d1jl5a_         260 -SELPPNLYYLNASSNEIRSL-C---DLPPSLEELNVSNNKLI-ELPA---LPPRLERLIASFNHLA-EVPE----LPQN  325 (353)
T ss_dssp             -SCCCTTCCEEECCSSCCSEE-C---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCS-CCCC----CCTT
T ss_pred             -ccccchhcccccccCccccc-c---ccCCCCCEEECCCCccC-cccc---ccCCCCEEECCCCcCC-cccc----ccCC
Confidence             122 3456788888887743 2   34678999999999998 5675   3678999999999998 7885    3578


Q ss_pred             CCEEEccCCccccccCcCcCCCCCcceeecc
Q 048351          547 LVVLDLRSNRFYGKIPFQLCHLADIQILDLS  577 (850)
Q Consensus       547 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls  577 (850)
                      |++|++++|+++ .+|..   ..+|+.|.+.
T Consensus       326 L~~L~L~~N~L~-~lp~~---~~~L~~L~~~  352 (353)
T d1jl5a_         326 LKQLHVEYNPLR-EFPDI---PESVEDLRMN  352 (353)
T ss_dssp             CCEEECCSSCCS-SCCCC---CTTCCEEECC
T ss_pred             CCEEECcCCcCC-CCCcc---ccccCeeECc
Confidence            999999999998 56653   3456666653

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=1.1e-20  Score=210.97  Aligned_cols=39  Identities=23%  Similarity=0.368  Sum_probs=23.9

Q ss_pred             CCCcEEEccCCcCCcc----cchhhhcCCCCcEEEccCCcccc
Q 048351          286 ISLRTLTLSDNELDGE----IPKFFQNMFKLEGLSLRGNSLEG  324 (850)
Q Consensus       286 ~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~~  324 (850)
                      .+|++|++++|+++..    ++..+..+++|++|++++|.+..
T Consensus        84 ~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~  126 (460)
T d1z7xw1          84 CKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD  126 (460)
T ss_dssp             CCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHH
T ss_pred             CCCCEEECCCCCccccccccccchhhccccccccccccccchh
Confidence            3566677776666542    33445566677777777776654

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=6.5e-21  Score=212.74  Aligned_cols=135  Identities=19%  Similarity=0.119  Sum_probs=68.2

Q ss_pred             CCccEEEccCCCCCCC----CCcccccCCCCCEEEcCCCcccccCCCcc-----ccccCccEEeccCCccccCCc----h
Q 048351          448 QNLVYLDLSSNLLSGK----LPDCWLQFNMLRILNLANNNFSGKIPNSC-----GYLQKMLTLSLHHNNFSGELP----S  514 (850)
Q Consensus       448 ~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-----~~l~~L~~L~Ls~N~l~~~~p----~  514 (850)
                      ..++.+++++|.+...    ....+...+.++.+++++|.++......+     .....|+.+++++|.++....    .
T Consensus       255 ~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~  334 (460)
T d1z7xw1         255 SRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSS  334 (460)
T ss_dssp             CCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccccchhhhhhhhccc
Confidence            4566666666665432    11233445666677777766653211111     123456666666666653322    2


Q ss_pred             hhcCCCCcCeeccccccceee----cchhHHhcCCCCCEEEccCCccccc----cCcCcCCCCCcceeecccccCc
Q 048351          515 LLKNFTHLRVVALEENSISGN----IPAWIGESLLNLVVLDLRSNRFYGK----IPFQLCHLADIQILDLSLNNIS  582 (850)
Q Consensus       515 ~l~~l~~L~~L~L~~N~l~~~----ip~~~~~~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~  582 (850)
                      .+...++|++|+|++|++++.    ++..+....+.|++|+|++|.++..    ++..+..+++|++|||++|+|+
T Consensus       335 ~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~  410 (460)
T d1z7xw1         335 VLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG  410 (460)
T ss_dssp             HHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred             ccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCC
Confidence            233445666666666665422    2223322334566666666666532    2233444556666666666654

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.74  E-value=9.3e-18  Score=167.73  Aligned_cols=205  Identities=22%  Similarity=0.370  Sum_probs=138.7

Q ss_pred             cEEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCCCccccccCccEEeccCCccccCCchhhcCCCCcCeeccccc
Q 048351          451 VYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEEN  530 (850)
Q Consensus       451 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N  530 (850)
                      ..++++.+.+++..  .+..+.+|+.|++.+|.++. + +.+..+++|++|++++|++++..|  +..+++|+.+++++|
T Consensus        22 ~~~~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~~-l-~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n   95 (227)
T d1h6ua2          22 IKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTT-I-EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGN   95 (227)
T ss_dssp             HHHHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSC
T ss_pred             HHHHhCCCCcCCcC--CHHHcCCcCEEECCCCCCCc-c-hhHhcCCCCcEeecCCceeecccc--ccccccccccccccc
Confidence            34555666665433  34556677777777777763 3 346677777777777777764433  667777777777777


Q ss_pred             cceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccCcccCCccccCcccCccccccCcccccccc
Q 048351          531 SISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSY  610 (850)
Q Consensus       531 ~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~  610 (850)
                      .++ .++. +. .+++|++++++++...+..  .+...+.++.+.++++.+....+  +.                    
T Consensus        96 ~~~-~i~~-l~-~l~~L~~l~l~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~--~~--------------------  148 (227)
T d1h6ua2          96 PLK-NVSA-IA-GLQSIKTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP--LA--------------------  148 (227)
T ss_dssp             CCS-CCGG-GT-TCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GG--------------------
T ss_pred             ccc-cccc-cc-ccccccccccccccccccc--hhccccchhhhhchhhhhchhhh--hc--------------------
Confidence            776 5543 33 5777777777777766433  34556677777777776653221  22                    


Q ss_pred             ccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCCCccccc
Q 048351          611 AVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQ  690 (850)
Q Consensus       611 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~  690 (850)
                                                     ..+.|+.|++++|++++..  .++++++|+.|+|++|++++. + .+++
T Consensus       149 -------------------------------~~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~~l-~-~l~~  193 (227)
T d1h6ua2         149 -------------------------------GLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISDI-S-PLAS  193 (227)
T ss_dssp             -------------------------------GCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCC-G-GGGG
T ss_pred             -------------------------------cccccccccccccccccch--hhcccccceecccCCCccCCC-h-hhcC
Confidence                                           2233478888888887443  378888999999999998864 3 4888


Q ss_pred             cCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCC
Q 048351          691 LQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSH  725 (850)
Q Consensus       691 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~  725 (850)
                      +++|++|+|++|++++..|  ++++++|++|++++
T Consensus       194 l~~L~~L~Ls~N~lt~i~~--l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         194 LPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN  226 (227)
T ss_dssp             CTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEE
T ss_pred             CCCCCEEECcCCcCCCCcc--cccCCCCCEEEeeC
Confidence            8999999999999886543  78889999998874

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.72  E-value=6.1e-17  Score=161.68  Aligned_cols=191  Identities=21%  Similarity=0.283  Sum_probs=158.6

Q ss_pred             cccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCCccccccCC
Q 048351          118 ALLKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAGNLDWISQLF  197 (850)
Q Consensus       118 ~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~  197 (850)
                      .+..+.+|++|++++|.++.  ++ .+.++++|++|++++|.+++..|  +..+++|+++++++|.+.   ..+.+.+++
T Consensus        36 ~~~~l~~L~~L~l~~~~i~~--l~-~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~---~i~~l~~l~  107 (227)
T d1h6ua2          36 TQADLDGITTLSAFGTGVTT--IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK---NVSAIAGLQ  107 (227)
T ss_dssp             CHHHHHTCCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS---CCGGGTTCT
T ss_pred             CHHHcCCcCEEECCCCCCCc--ch-hHhcCCCCcEeecCCceeecccc--cccccccccccccccccc---ccccccccc
Confidence            45678999999999999984  54 58899999999999999987544  899999999999999753   445688999


Q ss_pred             CccEEeCCCCCCCCCcchhhhhcCCCCCcEEEccCCCCCCCCCccccccccCCCCcccEEEccCCCCCCccchhhhcCCC
Q 048351          198 SLRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSS  277 (850)
Q Consensus       198 ~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~  277 (850)
                      +|++++++++...+.    ..+...+.++.+.++++.+....+      +... ++|+.|++++|.+++.          
T Consensus       108 ~L~~l~l~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~------~~~~-~~L~~L~l~~n~~~~~----------  166 (227)
T d1h6ua2         108 SIKTLDLTSTQITDV----TPLAGLSNLQVLYLDLNQITNISP------LAGL-TNLQYLSIGNAQVSDL----------  166 (227)
T ss_dssp             TCCEEECTTSCCCCC----GGGTTCTTCCEEECCSSCCCCCGG------GGGC-TTCCEEECCSSCCCCC----------
T ss_pred             ccccccccccccccc----chhccccchhhhhchhhhhchhhh------hccc-cccccccccccccccc----------
Confidence            999999999988775    346778999999999998876543      3444 8999999999998753          


Q ss_pred             CCCCCCCCCCCcEEEccCCcCCcccchhhhcCCCCcEEEccCCccccccccccccccccccCCCCCChhccCCCCCCEEE
Q 048351          278 IPDAPGPMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRGNSLEGVISEHFFSNFSYLKMGPHFPKWLQTQKHFSVLD  357 (850)
Q Consensus       278 ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~~~l~~~~p~~l~~l~~L~~L~  357 (850)
                        ..++++++|++|++++|++++ ++ .++++++|++|+|++|++++..+                   ++++++|+.|+
T Consensus       167 --~~l~~l~~L~~L~Ls~n~l~~-l~-~l~~l~~L~~L~Ls~N~lt~i~~-------------------l~~l~~L~~L~  223 (227)
T d1h6ua2         167 --TPLANLSKLTTLKADDNKISD-IS-PLASLPNLIEVHLKNNQISDVSP-------------------LANTSNLFIVT  223 (227)
T ss_dssp             --GGGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECTTSCCCBCGG-------------------GTTCTTCCEEE
T ss_pred             --hhhcccccceecccCCCccCC-Ch-hhcCCCCCCEEECcCCcCCCCcc-------------------cccCCCCCEEE
Confidence              126788999999999999986 44 38999999999999999986532                   67888888888


Q ss_pred             ccC
Q 048351          358 ISS  360 (850)
Q Consensus       358 Ls~  360 (850)
                      +++
T Consensus       224 lsn  226 (227)
T d1h6ua2         224 LTN  226 (227)
T ss_dssp             EEE
T ss_pred             eeC
Confidence            864

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=1.6e-17  Score=167.99  Aligned_cols=77  Identities=16%  Similarity=0.014  Sum_probs=41.9

Q ss_pred             cEEEcCCCCCCCCChhhhhccccCC-eEecCCCcCccCCCccccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcC
Q 048351          647 KSVDLSSNKLGGEVPEEIMDLVGLI-GLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLS  724 (850)
Q Consensus       647 ~~L~Ls~N~l~~~~p~~l~~l~~L~-~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls  724 (850)
                      +.|++++|+++...+..+ ...+++ .+++++|+++...+..|.++++|++|||++|+++...+..|.+++.|+++++.
T Consensus       156 ~~L~l~~n~l~~i~~~~~-~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~  233 (242)
T d1xwdc1         156 VILWLNKNGIQEIHNCAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY  233 (242)
T ss_dssp             EEEECCSSCCCEECTTTT-TTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEE
T ss_pred             eeeecccccccccccccc-cchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCC
Confidence            456666666663333333 333333 33455666664444456666667777776666665545556655555555443

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=1.9e-17  Score=167.36  Aligned_cols=219  Identities=17%  Similarity=0.132  Sum_probs=131.3

Q ss_pred             cEEEccCCcCcCccccccccCCCCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccC-CCccccccCccEEecc
Q 048351          426 FYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKI-PNSCGYLQKMLTLSLH  504 (850)
Q Consensus       426 ~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~Ls  504 (850)
                      +.++.++..++...+.. .   +++++|++++|.++...+.+|.++++|++|++++|.+.+.+ +..|.+++.++++.+.
T Consensus        11 ~~i~c~~~~l~~iP~~l-~---~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~   86 (242)
T d1xwdc1          11 RVFLCQESKVTEIPSDL-P---RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   86 (242)
T ss_dssp             SEEEEESCSCSSCCSCS-C---SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEE
T ss_pred             CEEEEeCCCCCCcCCCC-C---CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccc
Confidence            35566666665332222 1   46777777777776555556777777777777777766543 3356667777777665


Q ss_pred             C-CccccCCchhhcCCCCcCeeccccccceeecch-hHHhcCCCCCEEEccCCccccccCcCcCCCC-CcceeecccccC
Q 048351          505 H-NNFSGELPSLLKNFTHLRVVALEENSISGNIPA-WIGESLLNLVVLDLRSNRFYGKIPFQLCHLA-DIQILDLSLNNI  581 (850)
Q Consensus       505 ~-N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~-~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~-~L~~L~Ls~N~l  581 (850)
                      . |++....+..|.++++|+++++++|++. .++. .....++.+..+...++.+....+..+..++ .++.|++++|++
T Consensus        87 ~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~-~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l  165 (242)
T d1xwdc1          87 KANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI  165 (242)
T ss_dssp             CCTTCCEECTTSEECCTTCCEEEEESCCCC-SCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred             ccccccccccccccccccccccccchhhhc-ccccccccccccccccccccccccccccccccccccccceeeecccccc
Confidence            3 5666566666777777777777777775 3332 2222344455555566666655555555543 566677777777


Q ss_pred             cccCCccccCcccCccccccCccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCCh
Q 048351          582 SGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVP  661 (850)
Q Consensus       582 ~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p  661 (850)
                      +...+..+. .+.+                                                  .+.+++++|+++...+
T Consensus       166 ~~i~~~~~~-~~~l--------------------------------------------------~~~~~l~~n~l~~l~~  194 (242)
T d1xwdc1         166 QEIHNCAFN-GTQL--------------------------------------------------DELNLSDNNNLEELPN  194 (242)
T ss_dssp             CEECTTTTT-TCCE--------------------------------------------------EEEECTTCTTCCCCCT
T ss_pred             ccccccccc-chhh--------------------------------------------------hccccccccccccccH
Confidence            643332221 1111                                                  1344567777775555


Q ss_pred             hhhhccccCCeEecCCCcCccCCCccccccCCCCeeeCC
Q 048351          662 EEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLS  700 (850)
Q Consensus       662 ~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls  700 (850)
                      ..|.++++|++|+|++|+++...+..|.++++|+.+++.
T Consensus       195 ~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~  233 (242)
T d1xwdc1         195 DVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY  233 (242)
T ss_dssp             TTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEE
T ss_pred             HHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCC
Confidence            567777777777777777775555567777777766654

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.70  E-value=8.6e-18  Score=163.00  Aligned_cols=112  Identities=21%  Similarity=0.256  Sum_probs=51.3

Q ss_pred             CEEEcCCCcccccCCCccccccCccEEeccCCccccCC-chhhcCCCCcCeeccccccceeecchhHHhcCCCCCEEEcc
Q 048351          475 RILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGEL-PSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLR  553 (850)
Q Consensus       475 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~  553 (850)
                      ++++.++++++ .+|..+.  +++++|+|++|+|++.+ +..|.++++|+.|++++|++. .++...+..+++|++|+++
T Consensus        11 ~~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~-~~~~~~~~~~~~L~~L~Ls   86 (192)
T d1w8aa_          11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECC
T ss_pred             CEEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccc-cccccccccccccceeeec
Confidence            35555555555 3444331  34555555555554322 334444555555555555544 2222222234444444444


Q ss_pred             CCccccccCcCcCCCCCcceeecccccCcccCCcccc
Q 048351          554 SNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFN  590 (850)
Q Consensus       554 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~  590 (850)
                      +|++++..|.+|.++++|++|+|++|+|++..|..|.
T Consensus        87 ~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~  123 (192)
T d1w8aa_          87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFE  123 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSST
T ss_pred             cccccccCHHHHhCCCcccccccCCccccccCHHHhc
Confidence            4444444444444444444444444444444333333

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.70  E-value=2.8e-17  Score=159.31  Aligned_cols=173  Identities=21%  Similarity=0.177  Sum_probs=133.1

Q ss_pred             CEEEccCCcCcccCCCCCCCCcEEEccCCcCcCccccccccCCCCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCcc
Q 048351          405 PGIDISSNHLEGPSPSLPSNAFYIDLSKNKFSGPISFLCSFSGQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNF  484 (850)
Q Consensus       405 ~~L~l~~N~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l  484 (850)
                      +.++.++++++..+...++++++|+|++|++++.++...+..+++|++|++++|.+.+..+..|..+++|++|+|++|++
T Consensus        11 ~~v~Cs~~~L~~iP~~lp~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l   90 (192)
T d1w8aa_          11 TTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI   90 (192)
T ss_dssp             TEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCC
T ss_pred             CEEEEeCCCcCccCCCCCCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccc
Confidence            45677777777655555677888888888887766555555668899999999999888888888899999999999999


Q ss_pred             cccCCCccccccCccEEeccCCccccCCchhhcCCCCcCeeccccccceeecchhHHhcCCCCCEEEccCCccccccCcC
Q 048351          485 SGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQ  564 (850)
Q Consensus       485 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~  564 (850)
                      ++..|..|.++++|++|+|++|+|++..+..|..+++|++|+|++|.+....+...+  ...++.+.+..+.++...|..
T Consensus        91 ~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~--~~~l~~~~l~~~~~~c~~p~~  168 (192)
T d1w8aa_          91 KEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWF--AEWLRKKSLNGGAARCGAPSK  168 (192)
T ss_dssp             CEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHH--HHHHHHHCCSGGGCBBCSSTT
T ss_pred             cccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHHH--hhhhhhhcccCCCeEeCCChh
Confidence            887788888899999999999999887788888899999999999988744332222  234556667777777666654


Q ss_pred             cCCCCCcceeecccccCc
Q 048351          565 LCHLADIQILDLSLNNIS  582 (850)
Q Consensus       565 l~~l~~L~~L~Ls~N~l~  582 (850)
                         +..++.++|+.|.+.
T Consensus       169 ---l~~~~l~~L~~n~l~  183 (192)
T d1w8aa_         169 ---VRDVQIKDLPHSEFK  183 (192)
T ss_dssp             ---TTTSBGGGSCTTTCC
T ss_pred             ---hcCCEeeecCHhhCc
Confidence               455677788888876

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=1.6e-16  Score=156.17  Aligned_cols=73  Identities=27%  Similarity=0.378  Sum_probs=49.9

Q ss_pred             cEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCCCccccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCC
Q 048351          647 KSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSH  725 (850)
Q Consensus       647 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~  725 (850)
                      +.+++++|.+++  +..+..+++|+.+++++|++++. + .++++++|++|+|++|+++. +| .+.++++|++|++++
T Consensus       137 ~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i-~-~l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         137 ESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDI-V-PLAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             CEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEE
T ss_pred             cccccccccccc--ccccccccccccccccccccccc-c-cccCCCCCCEEECCCCCCCC-Ch-hhcCCCCCCEEEccC
Confidence            566666666653  23456677777777777777753 2 37777778888888887774 44 477777888887763

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=5.7e-16  Score=152.24  Aligned_cols=167  Identities=22%  Similarity=0.269  Sum_probs=139.1

Q ss_pred             cCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCCccccccCCCc
Q 048351          120 LKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAGNLDWISQLFSL  199 (850)
Q Consensus       120 ~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L  199 (850)
                      ..+..|++|++++|.++.  ++ .+..+++|++|+|++|.+++..  .++++++|++|++++|++.   ..+.+.++++|
T Consensus        43 ~~L~~L~~L~l~~~~i~~--l~-~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~---~l~~l~~l~~L  114 (210)
T d1h6ta2          43 NELNSIDQIIANNSDIKS--VQ-GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVK---DLSSLKDLKKL  114 (210)
T ss_dssp             HHHHTCCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCC---CGGGGTTCTTC
T ss_pred             HHhcCccEEECcCCCCCC--ch-hHhhCCCCCEEeCCCccccCcc--ccccCcccccccccccccc---ccccccccccc
Confidence            357889999999999985  33 4788999999999999999743  3789999999999999863   34568899999


Q ss_pred             cEEeCCCCCCCCCcchhhhhcCCCCCcEEEccCCCCCCCCCccccccccCCCCcccEEEccCCCCCCccchhhhcCCCCC
Q 048351          200 RYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIP  279 (850)
Q Consensus       200 ~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~ip  279 (850)
                      +.|++++|.+...    ..+..+++++.+++++|.++....      ...+ ++|+++++++|++++.           +
T Consensus       115 ~~L~l~~~~~~~~----~~l~~l~~l~~l~~~~n~l~~~~~------~~~l-~~L~~l~l~~n~l~~i-----------~  172 (210)
T d1h6ta2         115 KSLSLEHNGISDI----NGLVHLPQLESLYLGNNKITDITV------LSRL-TKLDTLSLEDNQISDI-----------V  172 (210)
T ss_dssp             CEEECTTSCCCCC----GGGGGCTTCCEEECCSSCCCCCGG------GGGC-TTCSEEECCSSCCCCC-----------G
T ss_pred             ccccccccccccc----cccccccccccccccccccccccc------cccc-cccccccccccccccc-----------c
Confidence            9999999998774    457889999999999999886533      3344 8999999999999863           2


Q ss_pred             CCCCCCCCCcEEEccCCcCCcccchhhhcCCCCcEEEccC
Q 048351          280 DAPGPMISLRTLTLSDNELDGEIPKFFQNMFKLEGLSLRG  319 (850)
Q Consensus       280 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~  319 (850)
                       .+.++++|++|++++|+++. +| .+.++++|++|+|++
T Consensus       173 -~l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         173 -PLAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             -GGTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEE
T ss_pred             -cccCCCCCCEEECCCCCCCC-Ch-hhcCCCCCCEEEccC
Confidence             16788999999999999984 55 589999999999974

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.66  E-value=1.2e-15  Score=148.53  Aligned_cols=164  Identities=20%  Similarity=0.268  Sum_probs=132.0

Q ss_pred             ccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCCccccccCCC
Q 048351          119 LLKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAGNLDWISQLFS  198 (850)
Q Consensus       119 l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~  198 (850)
                      ...+.++++|++++|.++.  ++ .+..+++|++|++++|.+++..|  ++++++|++|++++|.+.   ..+.++++++
T Consensus        36 ~~~l~~l~~L~l~~~~i~~--l~-~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~---~~~~l~~l~~  107 (199)
T d2omxa2          36 QTDLDQVTTLQADRLGIKS--ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA---DITPLANLTN  107 (199)
T ss_dssp             HHHHTTCCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC---CCGGGTTCTT
T ss_pred             HHHhcCCCEEECCCCCCCC--cc-ccccCCCcCcCccccccccCccc--ccCCcccccccccccccc---cccccccccc
Confidence            3567899999999999984  43 47889999999999999987543  899999999999999753   3345889999


Q ss_pred             ccEEeCCCCCCCCCcchhhhhcCCCCCcEEEccCCCCCCCCCccccccccCCCCcccEEEccCCCCCCccchhhhcCCCC
Q 048351          199 LRYLDLSSCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSI  278 (850)
Q Consensus       199 L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~i  278 (850)
                      |++|++++|.+...    ..+..+++|+.|++++|.+....      .+... ++|++|++++|++++.           
T Consensus       108 L~~L~l~~~~~~~~----~~~~~l~~L~~L~l~~n~l~~~~------~l~~~-~~L~~L~l~~n~l~~l-----------  165 (199)
T d2omxa2         108 LTGLTLFNNQITDI----DPLKNLTNLNRLELSSNTISDIS------ALSGL-TSLQQLNFSSNQVTDL-----------  165 (199)
T ss_dssp             CSEEECCSSCCCCC----GGGTTCTTCSEEECCSSCCCCCG------GGTTC-TTCSEEECCSSCCCCC-----------
T ss_pred             cccccccccccccc----cccchhhhhHHhhhhhhhhcccc------ccccc-ccccccccccccccCC-----------
Confidence            99999999988774    34778899999999999887542      34444 8999999999998863           


Q ss_pred             CCCCCCCCCCcEEEccCCcCCcccchhhhcCCCCcEE
Q 048351          279 PDAPGPMISLRTLTLSDNELDGEIPKFFQNMFKLEGL  315 (850)
Q Consensus       279 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  315 (850)
                      + .++++++|++|++++|++++ ++ .++.+++|++|
T Consensus       166 ~-~l~~l~~L~~L~ls~N~i~~-i~-~l~~L~~L~~L  199 (199)
T d2omxa2         166 K-PLANLTTLERLDISSNKVSD-IS-VLAKLTNLESL  199 (199)
T ss_dssp             G-GGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEE
T ss_pred             c-cccCCCCCCEEECCCCCCCC-Cc-cccCCCCCCcC
Confidence            2 26778899999999999885 44 57888888876

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.65  E-value=7.8e-16  Score=149.89  Aligned_cols=118  Identities=24%  Similarity=0.364  Sum_probs=57.2

Q ss_pred             EEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCCCccccccCccEEeccCCccccCCchhhcCCCCcCeeccccccc
Q 048351          453 LDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALEENSI  532 (850)
Q Consensus       453 L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l  532 (850)
                      ..++.+.+++.++  ...+.++++|++++|.++. + +.+..+++|++|++++|++++..|  +.++++|++|++++|.+
T Consensus        23 ~~l~~~~~~~~~~--~~~l~~l~~L~l~~~~i~~-l-~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~   96 (199)
T d2omxa2          23 TVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQI   96 (199)
T ss_dssp             HHTTCSSTTSEEC--HHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred             HHhCCCCCCCccC--HHHhcCCCEEECCCCCCCC-c-cccccCCCcCcCccccccccCccc--ccCCccccccccccccc
Confidence            3455555554332  2345566666666666552 2 234555566666666665553222  55555555555555555


Q ss_pred             eeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccC
Q 048351          533 SGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNI  581 (850)
Q Consensus       533 ~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  581 (850)
                      . .++. +. ++++|+.|++++|.+....  .+..+++|+.|++++|++
T Consensus        97 ~-~~~~-l~-~l~~L~~L~l~~~~~~~~~--~~~~l~~L~~L~l~~n~l  140 (199)
T d2omxa2          97 A-DITP-LA-NLTNLTGLTLFNNQITDID--PLKNLTNLNRLELSSNTI  140 (199)
T ss_dssp             C-CCGG-GT-TCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCC
T ss_pred             c-cccc-cc-ccccccccccccccccccc--ccchhhhhHHhhhhhhhh
Confidence            4 3332 22 3455555555555444221  233444444444444444

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=5.3e-15  Score=152.48  Aligned_cols=228  Identities=17%  Similarity=0.149  Sum_probs=132.6

Q ss_pred             ccEEEccCCCCCCCCCcccccCCCCCEEEcCCCccccc-CCCccccccCccEEeccCCccccCCchhhcCCCCcCeeccc
Q 048351          450 LVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGK-IPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVALE  528 (850)
Q Consensus       450 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~  528 (850)
                      +..+.++...+...... .....+|++||+++|.+++. ++..+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus        25 ~~~lrl~~~~~~~~~~~-~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls  103 (284)
T d2astb2          25 VIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLS  103 (284)
T ss_dssp             CSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECT
T ss_pred             ceEeeccccccccchhh-hccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCcccc
Confidence            44555655554432222 23345788888888777643 23345667788888888887777677777777888888887


Q ss_pred             cc-cceeecchhHHhcCCCCCEEEccCC-ccccc-cCcCcC-CCCCcceeeccccc--CcccCCccccCcccCccccccC
Q 048351          529 EN-SISGNIPAWIGESLLNLVVLDLRSN-RFYGK-IPFQLC-HLADIQILDLSLNN--ISGNIPKCFNNFTAMTQERSYN  602 (850)
Q Consensus       529 ~N-~l~~~ip~~~~~~l~~L~~L~L~~N-~l~~~-~p~~l~-~l~~L~~L~Ls~N~--l~~~~p~~~~~l~~L~~l~~~~  602 (850)
                      ++ .+++.--..+..++++|++|+++++ .++.. +...+. ..+.|+.|+++++.  ++...   +             
T Consensus       104 ~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~---l-------------  167 (284)
T d2astb2         104 GCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSD---L-------------  167 (284)
T ss_dssp             TCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHH---H-------------
T ss_pred             ccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhccccccccccc---c-------------
Confidence            74 4542211223345778888888775 33321 111122 23567777776532  22100   0             


Q ss_pred             ccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCC-CCCCCChhhhhccccCCeEecCCC-cC
Q 048351          603 SSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSN-KLGGEVPEEIMDLVGLIGLNLSRN-NL  680 (850)
Q Consensus       603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~p~~l~~l~~L~~L~Ls~N-~l  680 (850)
                                                        ......++.|++|++++| .+++.....+.++++|++|+|+++ .+
T Consensus       168 ----------------------------------~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i  213 (284)
T d2astb2         168 ----------------------------------STLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDI  213 (284)
T ss_dssp             ----------------------------------HHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTC
T ss_pred             ----------------------------------cccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCC
Confidence                                              001123445677888775 466666777777788888888874 56


Q ss_pred             ccCCCccccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCCCcCccc
Q 048351          681 TGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSHNNLSGK  731 (850)
Q Consensus       681 ~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~  731 (850)
                      ++.....++++++|+.|+++++--.+.++.....+++|   ++..+++++.
T Consensus       214 ~~~~l~~L~~~~~L~~L~l~~~~~d~~l~~l~~~lp~L---~i~~~~ls~~  261 (284)
T d2astb2         214 IPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHL---QINCSHFTTI  261 (284)
T ss_dssp             CGGGGGGGGGCTTCCEEECTTSSCTTCHHHHHHHSTTS---EESCCCSCCT
T ss_pred             ChHHHHHHhcCCCCCEEeeeCCCCHHHHHHHHHhCccc---cccCccCCCC
Confidence            66555667777788888887762222222222334444   3456666643

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1.5e-14  Score=149.00  Aligned_cols=211  Identities=18%  Similarity=0.207  Sum_probs=101.0

Q ss_pred             CccEEEccCCCCCCC-CCcccccCCCCCEEEcCCCcccccCCCccccccCccEEeccCC-ccccC-CchhhcCCCCcCee
Q 048351          449 NLVYLDLSSNLLSGK-LPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHN-NFSGE-LPSLLKNFTHLRVV  525 (850)
Q Consensus       449 ~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~-~p~~l~~l~~L~~L  525 (850)
                      +|++||+++|.+++. ++..+.++++|++|++++|.+++..+..+..+++|++|++++| .++.. +...+.++++|++|
T Consensus        47 ~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L  126 (284)
T d2astb2          47 RVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDEL  126 (284)
T ss_dssp             CCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEE
T ss_pred             CCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhcccc
Confidence            455555555554422 2233445555666666666555544445555556666666553 33311 12223455666666


Q ss_pred             ccccc-ccee-ecchhHHhcCCCCCEEEccCCc--cccc-cCcCcCCCCCcceeeccccc-CcccCCccccCcccCcccc
Q 048351          526 ALEEN-SISG-NIPAWIGESLLNLVVLDLRSNR--FYGK-IPFQLCHLADIQILDLSLNN-ISGNIPKCFNNFTAMTQER  599 (850)
Q Consensus       526 ~L~~N-~l~~-~ip~~~~~~l~~L~~L~L~~N~--l~~~-~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~l~  599 (850)
                      +++++ .+++ .++..+....++|+.|+++++.  ++.. +.....++++|++|++++|. +++.....+.+++      
T Consensus       127 ~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~------  200 (284)
T d2astb2         127 NLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLN------  200 (284)
T ss_dssp             ECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCT------
T ss_pred             ccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccC------
Confidence            66654 2321 1222232234556666666542  2211 11122345666666666543 4433333332222      


Q ss_pred             ccCccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCC-CCCCCCChhhhhccccCCeEecCCC
Q 048351          600 SYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSS-NKLGGEVPEEIMDLVGLIGLNLSRN  678 (850)
Q Consensus       600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~p~~l~~l~~L~~L~Ls~N  678 (850)
                                                                   .|++|+|++ +.+++.....++++++|+.|+++++
T Consensus       201 ---------------------------------------------~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         201 ---------------------------------------------YLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             ---------------------------------------------TCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             ---------------------------------------------cCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence                                                         236666666 3555555555666666777776665


Q ss_pred             cCccCCCcccccc-CCCCeeeCCCCcCcccCcccccC
Q 048351          679 NLTGYITPKIGQL-QSLDFLDLSRNQFSGGIPSSLSQ  714 (850)
Q Consensus       679 ~l~~~ip~~l~~l-~~L~~L~Ls~N~l~~~~p~~l~~  714 (850)
                       ++..   .+..+ ..+..|++..++++...+..+++
T Consensus       236 -~~d~---~l~~l~~~lp~L~i~~~~ls~~~~~~~~~  268 (284)
T d2astb2         236 -VPDG---TLQLLKEALPHLQINCSHFTTIARPTIGN  268 (284)
T ss_dssp             -SCTT---CHHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred             -CCHH---HHHHHHHhCccccccCccCCCCCCCccCc
Confidence             2211   11111 22333445666666655555544

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.44  E-value=1.8e-13  Score=121.11  Aligned_cols=105  Identities=27%  Similarity=0.321  Sum_probs=76.0

Q ss_pred             CEEeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCcccCCCCCCcEEEccCCCCCCCCCccccccCCCccEEeCC
Q 048351          126 RHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAGNLDWISQLFSLRYLDLS  205 (850)
Q Consensus       126 ~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls  205 (850)
                      |+|||++|+++.  ++ .++++++|++|++++|.++ .+|..++.+++|++|++++|++..   .+.++.+++|++|+++
T Consensus         1 R~L~Ls~n~l~~--l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~---l~~~~~l~~L~~L~l~   73 (124)
T d1dcea3           1 RVLHLAHKDLTV--LC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN---VDGVANLPRLQELLLC   73 (124)
T ss_dssp             SEEECTTSCCSS--CC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC---CGGGTTCSSCCEEECC
T ss_pred             CEEEcCCCCCCC--Cc-ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc---cCccccccccCeEECC
Confidence            578888888873  44 3677888888888888887 467778888888888888887633   2347777888888888


Q ss_pred             CCCCCCCcchhhhhcCCCCCcEEEccCCCCCCC
Q 048351          206 SCNLSKSTDWLQEVDKIPSLKTLYLEQCDLQLQ  238 (850)
Q Consensus       206 ~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~  238 (850)
                      +|+++..+. ...+..+++|++|++++|.++..
T Consensus        74 ~N~i~~~~~-~~~l~~~~~L~~L~l~~N~i~~~  105 (124)
T d1dcea3          74 NNRLQQSAA-IQPLVSCPRLVLLNLQGNSLCQE  105 (124)
T ss_dssp             SSCCCSSST-TGGGGGCTTCCEEECTTSGGGGS
T ss_pred             CCccCCCCC-chhhcCCCCCCEEECCCCcCCcC
Confidence            888776543 24466677777777777766543

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.43  E-value=1.1e-14  Score=155.17  Aligned_cols=237  Identities=17%  Similarity=0.129  Sum_probs=137.3

Q ss_pred             CCccEEEccCCCCCCC----CCcccccCCCCCEEEcCCCccccc----------CCCccccccCccEEeccCCccccC--
Q 048351          448 QNLVYLDLSSNLLSGK----LPDCWLQFNMLRILNLANNNFSGK----------IPNSCGYLQKMLTLSLHHNNFSGE--  511 (850)
Q Consensus       448 ~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----------~p~~~~~l~~L~~L~Ls~N~l~~~--  511 (850)
                      ..|+.|+|++|.+...    +...+...++|+.++++++.....          +...+..+++|+.|++++|.++..  
T Consensus        31 ~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~  110 (344)
T d2ca6a1          31 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ  110 (344)
T ss_dssp             SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred             CCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccccccc
Confidence            4455555555554321    112334455566666655433211          111233455666666666666543  


Q ss_pred             --CchhhcCCCCcCeeccccccceeecchh------------HHhcCCCCCEEEccCCccccc----cCcCcCCCCCcce
Q 048351          512 --LPSLLKNFTHLRVVALEENSISGNIPAW------------IGESLLNLVVLDLRSNRFYGK----IPFQLCHLADIQI  573 (850)
Q Consensus       512 --~p~~l~~l~~L~~L~L~~N~l~~~ip~~------------~~~~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~  573 (850)
                        +...+..+++|++|++++|.+...-...            .....+.|+.+++++|.+...    +...+...+.|+.
T Consensus       111 ~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~  190 (344)
T d2ca6a1         111 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHT  190 (344)
T ss_dssp             HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCE
T ss_pred             cchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhhhcc
Confidence              2334445667777777776654111100            112456788888888877532    2223455678888


Q ss_pred             eecccccCcccCCccccCcccCccccccCccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCC
Q 048351          574 LDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSS  653 (850)
Q Consensus       574 L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~  653 (850)
                      |++++|+++..-...+     +                                         .......+.|+.|+|++
T Consensus       191 L~L~~n~i~~~g~~~~-----l-----------------------------------------~~~l~~~~~L~~L~Ls~  224 (344)
T d2ca6a1         191 VKMVQNGIRPEGIEHL-----L-----------------------------------------LEGLAYCQELKVLDLQD  224 (344)
T ss_dssp             EECCSSCCCHHHHHHH-----H-----------------------------------------HTTGGGCTTCCEEECCS
T ss_pred             cccccccccccccccc-----h-----------------------------------------hhhhcchhhhccccccc
Confidence            8888888763210000     0                                         00112344558889999


Q ss_pred             CCCCCC----ChhhhhccccCCeEecCCCcCccCCCccc----cc--cCCCCeeeCCCCcCcccC----ccccc-CCCCC
Q 048351          654 NKLGGE----VPEEIMDLVGLIGLNLSRNNLTGYITPKI----GQ--LQSLDFLDLSRNQFSGGI----PSSLS-QVNRL  718 (850)
Q Consensus       654 N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l----~~--l~~L~~L~Ls~N~l~~~~----p~~l~-~l~~L  718 (850)
                      |.++..    +...+...++|++|+|++|.+++.-...+    ..  .+.|++||+++|+++...    ...+. +.+.|
T Consensus       225 N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L  304 (344)
T d2ca6a1         225 NTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDL  304 (344)
T ss_dssp             SCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTC
T ss_pred             ccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCC
Confidence            888643    34556678889999999999876422222    22  367999999999987532    33332 46789


Q ss_pred             CEEEcCCCcCcc
Q 048351          719 SVMDLSHNNLSG  730 (850)
Q Consensus       719 ~~L~ls~N~l~g  730 (850)
                      ++|++++|++..
T Consensus       305 ~~L~l~~N~~~~  316 (344)
T d2ca6a1         305 LFLELNGNRFSE  316 (344)
T ss_dssp             CEEECTTSBSCT
T ss_pred             CEEECCCCcCCC
Confidence            999999999863

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=1.3e-13  Score=128.51  Aligned_cols=76  Identities=22%  Similarity=0.238  Sum_probs=36.8

Q ss_pred             cEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCCC-ccccccCCCCeeeCCCCcCcccC---cccccCCCCCCEEE
Q 048351          647 KSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYIT-PKIGQLQSLDFLDLSRNQFSGGI---PSSLSQVNRLSVMD  722 (850)
Q Consensus       647 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip-~~l~~l~~L~~L~Ls~N~l~~~~---p~~l~~l~~L~~L~  722 (850)
                      ++|++++|+++...+..+..+++|+.|++++|+++.... ..+..+++|++|++++|.++...   +..++.+++|++||
T Consensus        66 ~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          66 KTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             hhhhcccccccCCCccccccccccccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            445555555543333334445555555555555543211 23455555555555555554321   12345555666555

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=1.8e-13  Score=127.47  Aligned_cols=125  Identities=17%  Similarity=0.214  Sum_probs=91.2

Q ss_pred             CCCccEEEccCCCCCCCCCcccccCCCCCEEEcCCCcccccCCCccccccCccEEeccCCccccCCchhhcCCCCcCeec
Q 048351          447 GQNLVYLDLSSNLLSGKLPDCWLQFNMLRILNLANNNFSGKIPNSCGYLQKMLTLSLHHNNFSGELPSLLKNFTHLRVVA  526 (850)
Q Consensus       447 ~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  526 (850)
                      ..++++|+|++|+|+ .++..+..+++|+.|++++|.++. + +.+..+++|++|++++|+++...+..+..+++|++|+
T Consensus        17 ~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~~-l-~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~   93 (162)
T d1a9na_          17 AVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI   93 (162)
T ss_dssp             TTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred             cCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCCc-c-CCcccCcchhhhhcccccccCCCccccccccccccce
Confidence            357888888888887 446666778888888888888874 3 3477788888888888888865555667788888888


Q ss_pred             cccccceeecch-hHHhcCCCCCEEEccCCcccccc---CcCcCCCCCcceee
Q 048351          527 LEENSISGNIPA-WIGESLLNLVVLDLRSNRFYGKI---PFQLCHLADIQILD  575 (850)
Q Consensus       527 L~~N~l~~~ip~-~~~~~l~~L~~L~L~~N~l~~~~---p~~l~~l~~L~~L~  575 (850)
                      +++|+++ .++. .....+++|++|++++|.++...   +..+..+++|++||
T Consensus        94 L~~N~i~-~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          94 LTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             ecccccc-ccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            8888887 5553 22235788888888888876332   12466677888776

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.40  E-value=5.4e-14  Score=149.58  Aligned_cols=112  Identities=22%  Similarity=0.319  Sum_probs=52.5

Q ss_pred             CCCCCEEEcCCCccccc-----CCCccccccCccEEeccCCccccC----CchhhcCCCCcCeeccccccceeecchhHH
Q 048351          471 FNMLRILNLANNNFSGK-----IPNSCGYLQKMLTLSLHHNNFSGE----LPSLLKNFTHLRVVALEENSISGNIPAWIG  541 (850)
Q Consensus       471 l~~L~~L~Ls~N~l~~~-----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~  541 (850)
                      ++.|+.|++++|.+...     +...+..+++|+.|++++|.++..    +...+..+++|++|++++|.+++.-...+.
T Consensus       185 ~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~  264 (344)
T d2ca6a1         185 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVV  264 (344)
T ss_dssp             CTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHH
T ss_pred             hhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHH
Confidence            34444444444444321     122334445555555555554321    223344555555666665555432122221


Q ss_pred             h-----cCCCCCEEEccCCcccccc----CcCcC-CCCCcceeecccccCc
Q 048351          542 E-----SLLNLVVLDLRSNRFYGKI----PFQLC-HLADIQILDLSLNNIS  582 (850)
Q Consensus       542 ~-----~l~~L~~L~L~~N~l~~~~----p~~l~-~l~~L~~L~Ls~N~l~  582 (850)
                      .     ..+.|++|++++|.++...    ...+. ++++|+.|++++|++.
T Consensus       265 ~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         265 DAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             HHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             HHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence            1     1245666666666664321    11221 3556777777777765

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.40  E-value=5.8e-13  Score=117.72  Aligned_cols=114  Identities=26%  Similarity=0.361  Sum_probs=93.1

Q ss_pred             CCCcccccccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCcccCCCCCCcEEEccCCCCCCCC
Q 048351          109 ASLRGTLNPALLKLHYLRHLDLSFNNFSGSQIPMFIGSLSKLEYLDLFAASFSGPIPPLLGNLSRLQYLSLGYNKLLRAG  188 (850)
Q Consensus       109 ~~l~g~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~  188 (850)
                      +.++ .++ .+..+++|++||+++|.++  .+|..++.+++|++|++++|.+++ +| .++++++|++|++++|++....
T Consensus         8 n~l~-~l~-~l~~l~~L~~L~ls~N~l~--~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N~i~~~~   81 (124)
T d1dcea3           8 KDLT-VLC-HLEQLLLVTHLDLSHNRLR--ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSA   81 (124)
T ss_dssp             SCCS-SCC-CGGGGTTCCEEECCSSCCC--CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSS
T ss_pred             CCCC-CCc-ccccCCCCCEEECCCCccC--cchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCCccCCCC
Confidence            4554 333 4889999999999999998  478889999999999999999995 44 5999999999999999987666


Q ss_pred             CccccccCCCccEEeCCCCCCCCCcchhhh-hcCCCCCcEE
Q 048351          189 NLDWISQLFSLRYLDLSSCNLSKSTDWLQE-VDKIPSLKTL  228 (850)
Q Consensus       189 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~-l~~l~~L~~L  228 (850)
                      ....+..+++|++|++++|.++..+..... ...+|+|+.|
T Consensus        82 ~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          82 AIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             TTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            667789999999999999999876443333 3346666655

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.24  E-value=2.5e-13  Score=131.14  Aligned_cols=131  Identities=24%  Similarity=0.292  Sum_probs=80.8

Q ss_pred             ecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccCcccCCccccCcccCccccccCccccccccccCC
Q 048351          535 NIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNNFTAMTQERSYNSSAITFSYAVPS  614 (850)
Q Consensus       535 ~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~  614 (850)
                      .+|..+. .+++|++|+|++|+++. ++ .+..+++|+.|++++|+|+ .+|..+..                       
T Consensus        39 ~l~~sl~-~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~-----------------------   91 (198)
T d1m9la_          39 KMDATLS-TLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAV-----------------------   91 (198)
T ss_dssp             CCHHHHH-HTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEEC-SCSSHHHH-----------------------
T ss_pred             hhhhHHh-cccccceeECcccCCCC-cc-cccCCccccChhhcccccc-cccccccc-----------------------
Confidence            3444444 46667777777776663 33 3666677777777777665 22221111                       


Q ss_pred             CcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCChhhhhccccCCeEecCCCcCccCCC-ccccccCC
Q 048351          615 RTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRNNLTGYIT-PKIGQLQS  693 (850)
Q Consensus       615 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip-~~l~~l~~  693 (850)
                                                  ++.|+.|++++|+++. + ..+..+++|+.|++++|+++.... ..+..+++
T Consensus        92 ----------------------------~~~L~~L~l~~N~i~~-l-~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~  141 (198)
T d1m9la_          92 ----------------------------ADTLEELWISYNQIAS-L-SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDK  141 (198)
T ss_dssp             ----------------------------HHHCCEEECSEEECCC-H-HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTT
T ss_pred             ----------------------------cccccccccccccccc-c-ccccccccccccccccchhccccccccccCCCc
Confidence                                        1234677777777763 3 346777788888888887775321 35677778


Q ss_pred             CCeeeCCCCcCcccCccc----------ccCCCCCCEEE
Q 048351          694 LDFLDLSRNQFSGGIPSS----------LSQVNRLSVMD  722 (850)
Q Consensus       694 L~~L~Ls~N~l~~~~p~~----------l~~l~~L~~L~  722 (850)
                      |+.|+|++|++....+..          +..+++|++||
T Consensus       142 L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         142 LEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             CSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             cceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            888888888776544332          45677777776

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=1.4e-11  Score=113.55  Aligned_cols=108  Identities=19%  Similarity=0.220  Sum_probs=78.4

Q ss_pred             cEEEcCCCCCCCCChhhhhccccCCeEecCCC-cCccCCCccccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcCC
Q 048351          647 KSVDLSSNKLGGEVPEEIMDLVGLIGLNLSRN-NLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLSH  725 (850)
Q Consensus       647 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~  725 (850)
                      +.++.+++.+. ..|..+..+++|++|++++| .++...+..|.++++|+.|+|++|+|+...|..|..+++|++|||++
T Consensus        11 ~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~   89 (156)
T d2ifga3          11 SGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (156)
T ss_dssp             SCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             CeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccC
Confidence            55777777776 56677777788888888655 47766667788888888888888888877777788888888888888


Q ss_pred             CcCcccCCCC-CcCCCcCccccCCCCCCCCCC
Q 048351          726 NNLSGKIPTG-TQLQSFNASVYDGNPELCGLP  756 (850)
Q Consensus       726 N~l~g~iP~~-~~~~~~~~~~~~gN~~lc~~~  756 (850)
                      |+|+ .+|.+ .+...+....+.|||+-|+|.
T Consensus        90 N~l~-~l~~~~~~~~~l~~L~L~~Np~~C~C~  120 (156)
T d2ifga3          90 NALE-SLSWKTVQGLSLQELVLSGNPLHCSCA  120 (156)
T ss_dssp             SCCS-CCCSTTTCSCCCCEEECCSSCCCCCGG
T ss_pred             CCCc-ccChhhhccccccccccCCCcccCCch
Confidence            8887 45543 223344555677888888764

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.20  E-value=3.8e-13  Score=129.81  Aligned_cols=130  Identities=24%  Similarity=0.254  Sum_probs=76.7

Q ss_pred             CchhhcCCCCcCeeccccccceeecchhHHhcCCCCCEEEccCCccccccCcCcCCCCCcceeecccccCcccCCccccC
Q 048351          512 LPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPFQLCHLADIQILDLSLNNISGNIPKCFNN  591 (850)
Q Consensus       512 ~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~  591 (850)
                      +|..+..+++|++|+|++|+|+ .++. +. .+++|++|++++|.++ .+|..+..+++|+.|++++|+++.. + .+. 
T Consensus        40 l~~sl~~L~~L~~L~Ls~n~I~-~i~~-l~-~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~l-~-~~~-  112 (198)
T d1m9la_          40 MDATLSTLKACKHLALSTNNIE-KISS-LS-GMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL-S-GIE-  112 (198)
T ss_dssp             CHHHHHHTTTCCEEECSEEEES-CCCC-HH-HHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCCH-H-HHH-
T ss_pred             hhhHHhcccccceeECcccCCC-Cccc-cc-CCccccChhhcccccc-ccccccccccccccccccccccccc-c-ccc-
Confidence            4455666666666666666665 4542 33 4666666666666665 3343344445667777777766531 1 122 


Q ss_pred             cccCccccccCccccccccccCCCcccCccceEeeEEEEEecCcccccccccccccEEEcCCCCCCCCCh-hhhhccccC
Q 048351          592 FTAMTQERSYNSSAITFSYAVPSRTTMLPVHIFFDIVLLTWKGSEYEYKNTLGLVKSVDLSSNKLGGEVP-EEIMDLVGL  670 (850)
Q Consensus       592 l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L  670 (850)
                                                                        .+++|+.|++++|+++.... ..+..+++|
T Consensus       113 --------------------------------------------------~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L  142 (198)
T d1m9la_         113 --------------------------------------------------KLVNLRVLYMSNNKITNWGEIDKLAALDKL  142 (198)
T ss_dssp             --------------------------------------------------HHHHSSEEEESEEECCCHHHHHHHTTTTTC
T ss_pred             --------------------------------------------------ccccccccccccchhccccccccccCCCcc
Confidence                                                              22233677777777763322 356777778


Q ss_pred             CeEecCCCcCccCCCcc----------ccccCCCCeee
Q 048351          671 IGLNLSRNNLTGYITPK----------IGQLQSLDFLD  698 (850)
Q Consensus       671 ~~L~Ls~N~l~~~ip~~----------l~~l~~L~~L~  698 (850)
                      +.|+|++|.++...+..          +..+++|+.||
T Consensus       143 ~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         143 EDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             SEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             ceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            88888888776543322          56678888876

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=3.1e-11  Score=111.13  Aligned_cols=84  Identities=18%  Similarity=0.120  Sum_probs=72.7

Q ss_pred             ccEEEcCCC-CCCCCChhhhhccccCCeEecCCCcCccCCCccccccCCCCeeeCCCCcCcccCcccccCCCCCCEEEcC
Q 048351          646 VKSVDLSSN-KLGGEVPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPSSLSQVNRLSVMDLS  724 (850)
Q Consensus       646 L~~L~Ls~N-~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls  724 (850)
                      +++|++++| .++...+..|.++++|+.|+|++|+|+...|..|..+++|++|||++|+|+...+..|..+ .|++|+|+
T Consensus        33 l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~~-~l~~L~L~  111 (156)
T d2ifga3          33 LTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGL-SLQELVLS  111 (156)
T ss_dssp             CSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSC-CCCEEECC
T ss_pred             cCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCcccChhhhccc-cccccccC
Confidence            378999766 4887777889999999999999999998888999999999999999999996666666554 69999999


Q ss_pred             CCcCcc
Q 048351          725 HNNLSG  730 (850)
Q Consensus       725 ~N~l~g  730 (850)
                      +|++.+
T Consensus       112 ~Np~~C  117 (156)
T d2ifga3         112 GNPLHC  117 (156)
T ss_dssp             SSCCCC
T ss_pred             CCcccC
Confidence            999964

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=4.6e-08  Score=90.12  Aligned_cols=80  Identities=24%  Similarity=0.148  Sum_probs=53.2

Q ss_pred             cccccEEEcCCCCCCCC--ChhhhhccccCCeEecCCCcCccCCCccccccCCCCeeeCCCCcCcccCcc-------ccc
Q 048351          643 LGLVKSVDLSSNKLGGE--VPEEIMDLVGLIGLNLSRNNLTGYITPKIGQLQSLDFLDLSRNQFSGGIPS-------SLS  713 (850)
Q Consensus       643 l~~L~~L~Ls~N~l~~~--~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~-------~l~  713 (850)
                      ++.|++|+|++|+|+..  ++..+..+++|+.|+|++|+++...+-.+.....|+.|++++|.++.....       .+.
T Consensus        64 ~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~  143 (162)
T d1koha1          64 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRE  143 (162)
T ss_dssp             CTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHT
T ss_pred             CCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHHH
Confidence            44557777888877754  245567778888888888888754333333445678888888888765442       255


Q ss_pred             CCCCCCEEE
Q 048351          714 QVNRLSVMD  722 (850)
Q Consensus       714 ~l~~L~~L~  722 (850)
                      .+++|++||
T Consensus       144 ~~P~L~~LD  152 (162)
T d1koha1         144 RFPKLLRLD  152 (162)
T ss_dssp             TSTTCCEET
T ss_pred             HCCCCCEEC
Confidence            677777775

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=4e-08  Score=90.49  Aligned_cols=84  Identities=18%  Similarity=0.177  Sum_probs=50.2

Q ss_pred             ccccccCccEEeccCCccccC--CchhhcCCCCcCeeccccccceeecchhHHhcCCCCCEEEccCCccccccCc-----
Q 048351          491 SCGYLQKMLTLSLHHNNFSGE--LPSLLKNFTHLRVVALEENSISGNIPAWIGESLLNLVVLDLRSNRFYGKIPF-----  563 (850)
Q Consensus       491 ~~~~l~~L~~L~Ls~N~l~~~--~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~-----  563 (850)
                      .+..+++|++|+|++|+++..  ++..+..+++|+.|++++|+++ .+++........|+.|++++|.+......     
T Consensus        60 ~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~-~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~  138 (162)
T d1koha1          60 IEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK-SERELDKIKGLKLEELWLDGNSLSDTFRDQSTYI  138 (162)
T ss_dssp             HHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCC-CGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHH
T ss_pred             HHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccc-cchhhhhhhccccceeecCCCCcCcCcccchhHH
Confidence            334566777777777777643  2344566777777777777776 55542222345667777777777644332     


Q ss_pred             --CcCCCCCcceee
Q 048351          564 --QLCHLADIQILD  575 (850)
Q Consensus       564 --~l~~l~~L~~L~  575 (850)
                        .+..+|+|+.||
T Consensus       139 ~~i~~~~P~L~~LD  152 (162)
T d1koha1         139 SAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHTTSTTCCEET
T ss_pred             HHHHHHCCCCCEEC
Confidence              144566666665

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.70  E-value=4.8e-06  Score=76.53  Aligned_cols=100  Identities=13%  Similarity=0.055  Sum_probs=58.4

Q ss_pred             hhhhcCCCCCcEEEccCCCCCCCCCccccccccCCCCcccEEEccCCCCCCccchhhhcCCCCCCCCCCCCCCcEEEccC
Q 048351          216 LQEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTLSD  295 (850)
Q Consensus       216 ~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~ip~~l~~l~~L~~L~Ls~  295 (850)
                      ...+...+.|++|+|++|.+...........+... +.|++|+|++|.++......+.      ..+...++|++|++++
T Consensus        37 ~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n-~~L~~L~L~~n~i~~~g~~~l~------~aL~~n~sL~~L~l~~  109 (167)
T d1pgva_          37 IEAACNSKHIEKFSLANTAISDSEARGLIELIETS-PSLRVLNVESNFLTPELLARLL------RSTLVTQSIVEFKADN  109 (167)
T ss_dssp             HHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHC-SSCCEEECCSSBCCHHHHHHHH------HHTTTTCCCSEEECCC
T ss_pred             HHHHhhCCccceeeccccccchhHHHHHhhhhhhc-ccccceeeehhhcchHHHHHHH------HHHHhCCcCCEEECCC
Confidence            34455556666666666655432211111122233 6777888888877754333322      2345567788888888


Q ss_pred             CcCCcc-------cchhhhcCCCCcEEEccCCcc
Q 048351          296 NELDGE-------IPKFFQNMFKLEGLSLRGNSL  322 (850)
Q Consensus       296 N~l~~~-------~p~~l~~l~~L~~L~L~~N~l  322 (850)
                      |.+...       +...+...+.|+.|+++.+..
T Consensus       110 n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~~  143 (167)
T d1pgva_         110 QRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  143 (167)
T ss_dssp             CSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             CcCCCccHHHHHHHHHHHHhCCCccEeeCcCCCc
Confidence            765421       445566778899999887654

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.34  E-value=3.7e-05  Score=70.37  Aligned_cols=85  Identities=13%  Similarity=0.078  Sum_probs=44.0

Q ss_pred             CCccEEEccCC-CCCCC----CCcccccCCCCCEEEcCCCcccccCCC----ccccccCccEEeccCCccccC----Cch
Q 048351          448 QNLVYLDLSSN-LLSGK----LPDCWLQFNMLRILNLANNNFSGKIPN----SCGYLQKMLTLSLHHNNFSGE----LPS  514 (850)
Q Consensus       448 ~~L~~L~Ls~n-~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~----~~~~l~~L~~L~Ls~N~l~~~----~p~  514 (850)
                      ++|++|+|+++ .++..    +-.++...+.|+.|+|++|.+......    .+...+.|++|++++|.++..    +-.
T Consensus        15 ~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~   94 (167)
T d1pgva_          15 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR   94 (167)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred             CCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHH
Confidence            56777777763 34321    122344556677777777766532222    223345566666666665521    122


Q ss_pred             hhcCCCCcCeeccccccc
Q 048351          515 LLKNFTHLRVVALEENSI  532 (850)
Q Consensus       515 ~l~~l~~L~~L~L~~N~l  532 (850)
                      .+...++|++|++++|++
T Consensus        95 aL~~n~sL~~L~l~~n~~  112 (167)
T d1pgva_          95 STLVTQSIVEFKADNQRQ  112 (167)
T ss_dssp             HTTTTCCCSEEECCCCSS
T ss_pred             HHHhCCcCCEEECCCCcC
Confidence            344445555555555543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.07  E-value=4e-05  Score=70.14  Aligned_cols=100  Identities=14%  Similarity=0.062  Sum_probs=54.4

Q ss_pred             hhhcCCCCCcEEEccCCCCCCCCCccccccccCCCCcccEEEccCCCCCCccchhhhcCCCCCCCCCCCCCCcEEEc--c
Q 048351          217 QEVDKIPSLKTLYLEQCDLQLQPTIHRSFSHLNSSPSLETLGLSYNNLTASIYPWLFNVSSIPDAPGPMISLRTLTL--S  294 (850)
Q Consensus       217 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~ip~~l~~l~~L~~L~L--s  294 (850)
                      ..+...++|++|++++|.++..........+... +.++.+++++|.++......+      ...+...++|+.++|  +
T Consensus        40 ~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~-~~l~~l~l~~~~~~~~g~~~l------~~~l~~~~~L~~l~L~l~  112 (166)
T d1io0a_          40 EALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVN-NTLKSLNVESNFISGSGILAL------VEALQSNTSLIELRIDNQ  112 (166)
T ss_dssp             HHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHC-SSCCEEECCSSCCCHHHHHHH------HHGGGGCSSCCEEECCCC
T ss_pred             HHHhcCCccCeeeccCCcccHHHHHHHHHHHhhc-ccchhhhhccccccchhHHHH------HHHHHhCccccEEeeccC
Confidence            3444455555555555554432221111122223 667777777777664332221      123445667776555  4


Q ss_pred             CCcCCc----ccchhhhcCCCCcEEEccCCccc
Q 048351          295 DNELDG----EIPKFFQNMFKLEGLSLRGNSLE  323 (850)
Q Consensus       295 ~N~l~~----~~p~~l~~l~~L~~L~L~~N~l~  323 (850)
                      +|.+..    .+...+...+.|++|+++.+...
T Consensus       113 ~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~~  145 (166)
T d1io0a_         113 SQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  145 (166)
T ss_dssp             SSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             CCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCCc
Confidence            566654    34456678889999999877643

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.68  E-value=9.2e-05  Score=67.59  Aligned_cols=12  Identities=17%  Similarity=0.099  Sum_probs=6.5

Q ss_pred             CCCCCCEEeCCC
Q 048351          121 KLHYLRHLDLSF  132 (850)
Q Consensus       121 ~l~~L~~L~Ls~  132 (850)
                      +.+.|++|+|++
T Consensus        15 ~~~~L~~L~L~~   26 (166)
T d1io0a_          15 NDPDLEEVNLNN   26 (166)
T ss_dssp             TCTTCCEEECTT
T ss_pred             cCCCCcEEEcCC
Confidence            445555555554