Citrus Sinensis ID: 048367

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80-----
Protein Sequence
ASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFSIAENESIGREHYNFMQKMLLPCGLPPEREDD
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHccccHHHHHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHccccHHHHHHHHHHHHHcccccccccccc
Coil and Loop (DISEMBL)
ASDRFNINSQLEHLQAKyvgtghadlnRFEWAVNIQrdsyasyvGHYPILAYfsiaenesigREHYNFMQKmllpcglpperedd
Flexible Loop (DISEMBL)
ASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFSIAENESIGREHYNFMQKMLlpcglpperedd
Low Complexity Region (SEG)
ASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFSIAENESIGREHYNFMQKMLLPCGLPPEREDD
Disordered region (IsUnstruct)
**********LEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFSIAENESIGREHYNFMQKMLLPCG********
Disordered Region (DISOPRED)
**DRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFSIAENESIGREHYNFMQKML************
Disordered Region (DISEMBL)
ASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFSIAENESIGREHYNFMQKMLLPCGLPPEREDD
Disordered Region (DISPRO)
*SDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFSIAENESIGREHYNFMQKMLLPCGLP******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
ASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFSIAENESIGREHYNFMQKMLLPCGLPPEREDD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	85	2.2.26 [Sep-21-2011]
Q9LW64	87	Uncharacterized protein A	yes	no	1.0	0.977	0.905	2e-42
P58728	87	Uncharacterized protein A	yes	no	1.0	0.977	0.905	2e-42
Q9VHI4	85	Probable splicing factor	yes	no	0.976	0.976	0.638	3e-27
Q9BWJ5	86	Splicing factor 3B subuni	yes	no	0.988	0.976	0.583	1e-25
Q56K13	86	Splicing factor 3B subuni	yes	no	0.988	0.976	0.583	1e-25
Q923D4	86	Splicing factor 3B subuni	yes	no	0.988	0.976	0.571	2e-24
Q55BF5	94	Splicing factor 3B subuni	yes	no	0.988	0.893	0.559	9e-24
Q9P7R6	85	Uncharacterized protein C	yes	no	0.929	0.929	0.455	2e-16

>sp|Q9LW64|SF3BA_ARATH Uncharacterized protein At3g23325 OS=Arabidopsis thaliana GN=At3g23325 PE=3 SV=1

 Score =  171 bits (432), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 77/85 (90%), Positives = 83/85 (97%)

Query: 1  ASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFSIAENES 60
          ASDRFNINSQLEHLQAKYVGTGHADL+RFEW VNIQRDSYASY+GHYP+L+YF+IAENES
Sbjct: 3  ASDRFNINSQLEHLQAKYVGTGHADLSRFEWTVNIQRDSYASYIGHYPMLSYFAIAENES 62

Query: 61 IGREHYNFMQKMLLPCGLPPEREDD 85
          IGRE YNFMQKMLLPCGLPPERED+
Sbjct: 63 IGRERYNFMQKMLLPCGLPPEREDE 87

Arabidopsis thaliana (taxid: 3702)

>sp|P58728|SF3BB_ARATH Uncharacterized protein At4g14342 OS=Arabidopsis thaliana GN=At4g14342 PE=3 SV=1

 Score =  170 bits (431), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 77/85 (90%), Positives = 84/85 (98%)

Query: 1  ASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFSIAENES 60
          ASDRFNINSQLEHLQAKYVGTGHADL+RFEWAVNIQRDSYASY+GHYP+L+YF+IAENES
Sbjct: 3  ASDRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASYIGHYPMLSYFAIAENES 62

Query: 61 IGREHYNFMQKMLLPCGLPPEREDD 85
          IGRE YNFMQKMLLPCGLPPERE++
Sbjct: 63 IGRERYNFMQKMLLPCGLPPEREEE 87

Arabidopsis thaliana (taxid: 3702)

>sp|Q9VHI4|SF3B5_DROME Probable splicing factor 3B subunit 5 OS=Drosophila melanogaster GN=CG11985 PE=1 SV=1

 Score =  120 bits (301), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 53/83 (63%), Positives = 66/83 (79%)

Query: 3  DRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFSIAENESIG 62
          +R+NI+SQLEHLQ+KY+GTGHAD  +FEW  N  RDS ASY+GHY IL YF+IAENES  
Sbjct: 3  ERYNIHSQLEHLQSKYIGTGHADTTKFEWLTNQHRDSLASYMGHYDILNYFAIAENESKA 62

Query: 63 REHYNFMQKMLLPCGLPPEREDD 85
          R  +N M++ML PCG PPE+ +D
Sbjct: 63 RVRFNLMERMLQPCGPPPEKLED 85

Drosophila melanogaster (taxid: 7227)

>sp|Q9BWJ5|SF3B5_HUMAN Splicing factor 3B subunit 5 OS=Homo sapiens GN=SF3B5 PE=1 SV=1

 Score =  115 bits (287), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 49/84 (58%), Positives = 66/84 (78%)

Query: 2  SDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFSIAENESI 61
          +DR+ I+SQLEHLQ+KY+GTGHAD  ++EW VN  RDSY SY+GH+ +L YF+IAENES 
Sbjct: 2  TDRYTIHSQLEHLQSKYIGTGHADTTKWEWLVNQHRDSYCSYMGHFDLLNYFAIAENESK 61

Query: 62 GREHYNFMQKMLLPCGLPPEREDD 85
           R  +N M+KML PCG P ++ ++
Sbjct: 62 ARVRFNLMEKMLQPCGPPADKPEE 85

Homo sapiens (taxid: 9606)

>sp|Q56K13|SF3B5_BOVIN Splicing factor 3B subunit 5 OS=Bos taurus GN=SF3B5 PE=3 SV=1

 Score =  115 bits (287), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 49/84 (58%), Positives = 66/84 (78%)

Query: 2  SDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFSIAENESI 61
          +DR+ I+SQLEHLQ+KY+GTGHAD  ++EW VN  RDSY SY+GH+ +L YF+IAENES 
Sbjct: 2  TDRYTIHSQLEHLQSKYIGTGHADTTKWEWLVNQHRDSYCSYMGHFDLLNYFAIAENESK 61

Query: 62 GREHYNFMQKMLLPCGLPPEREDD 85
           R  +N M+KML PCG P ++ ++
Sbjct: 62 ARVRFNLMEKMLQPCGPPADKPEE 85

Bos taurus (taxid: 9913)

>sp|Q923D4|SF3B5_MOUSE Splicing factor 3B subunit 5 OS=Mus musculus GN=Sf3b5 PE=2 SV=1

 Score =  111 bits (277), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 48/84 (57%), Positives = 65/84 (77%)

Query: 2  SDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFSIAENESI 61
          +DR+ I+SQLEHLQ+KY+GTGHAD  ++EW VN  RDSY SY+GH+ +L YF+IAENES 
Sbjct: 2  TDRYTIHSQLEHLQSKYIGTGHADTTKWEWLVNQHRDSYCSYMGHFDLLNYFAIAENESK 61

Query: 62 GREHYNFMQKMLLPCGLPPEREDD 85
           R  +N M+KML P G P ++ ++
Sbjct: 62 ARVRFNLMEKMLQPSGPPADKPEE 85

Mus musculus (taxid: 10090)

>sp|Q55BF5|SF3B5_DICDI Splicing factor 3B subunit 5 OS=Dictyostelium discoideum GN=sf3b5 PE=3 SV=1

 Score =  108 bits (270), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 47/84 (55%), Positives = 64/84 (76%)

Query: 2  SDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFSIAENESI 61
          S+R ++NSQLEHLQ +YVGTGHAD+++ EW  N  RDS +S++GH   L+ FSIAENES+
Sbjct: 2  SERESLNSQLEHLQMRYVGTGHADISKHEWLTNQHRDSLSSFIGHSSFLSLFSIAENESV 61

Query: 62 GREHYNFMQKMLLPCGLPPEREDD 85
          GR  YN + KM+ PCG  P+ +D+
Sbjct: 62 GRVRYNTLTKMISPCGPAPKIKDN 85

Dictyostelium discoideum (taxid: 44689)

>sp|Q9P7R6|YHV5_SCHPO Uncharacterized protein C211.05 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC211.05 PE=3 SV=1

 Score = 84.3 bits (207), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 36/79 (45%), Positives = 52/79 (65%)

Query: 2  SDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFSIAENESI 61
          +DR    ++LE LQA+YVG G+A   ++EW VN  RD+ +S VGH P+LAY + A  E  
Sbjct: 2  ADRLRSQAKLEQLQARYVGVGNAFTTKYEWMVNQHRDTLSSVVGHPPLLAYMATALGEPR 61

Query: 62 GREHYNFMQKMLLPCGLPP 80
           +   N ++KM++PCG PP
Sbjct: 62 VQVRKNLLEKMIMPCGPPP 80

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	85
449432544	87	PREDICTED: uncharacterized protein At3g2	1.0	0.977	0.988	7e-44
449433720	87	PREDICTED: uncharacterized protein At3g2	1.0	0.977	0.964	7e-43
225433167	87	PREDICTED: uncharacterized protein At3g2	1.0	0.977	0.964	1e-42
224099925	87	predicted protein [Populus trichocarpa]	1.0	0.977	0.941	3e-42
255575885	87	Splicing factor 3B subunit, putative [Ri	1.0	0.977	0.941	4e-42
116779103	87	unknown [Picea sitchensis] gi|116780938|	1.0	0.977	0.941	4e-42
297726259	117	Os08g0278966 [Oryza sativa Japonica Grou	1.0	0.726	0.929	4e-42
224107437	87	predicted protein [Populus trichocarpa]	1.0	0.977	0.941	5e-42
115476652	87	Os08g0444100 [Oryza sativa Japonica Grou	1.0	0.977	0.941	6e-42
297800812	87	hypothetical protein ARALYDRAFT_493471 [	1.0	0.977	0.917	3e-41

>gi|449432544|ref|XP_004134059.1| PREDICTED: uncharacterized protein At3g23325-like [Cucumis sativus]

 Score =  181 bits (458), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 84/85 (98%), Positives = 85/85 (100%)

Query: 1  ASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFSIAENES 60
          ASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYF+IAENES
Sbjct: 3  ASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENES 62

Query: 61 IGREHYNFMQKMLLPCGLPPEREDD 85
          IGREHYNFMQKMLLPCGLPPEREDD
Sbjct: 63 IGREHYNFMQKMLLPCGLPPEREDD 87

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449433720|ref|XP_004134645.1| PREDICTED: uncharacterized protein At3g23325-like [Cucumis sativus] gi|449508568|ref|XP_004163349.1| PREDICTED: uncharacterized protein At3g23325-like [Cucumis sativus] gi|307136184|gb|ADN34023.1| splicing factor 3b subunit [Cucumis melo subsp. melo]

 Score =  177 bits (449), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 82/85 (96%), Positives = 84/85 (98%)

Query: 1  ASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFSIAENES 60
          ASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYF++AENES
Sbjct: 3  ASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAENES 62

Query: 61 IGREHYNFMQKMLLPCGLPPEREDD 85
          IGRE YNFMQKMLLPCGLPPEREDD
Sbjct: 63 IGRERYNFMQKMLLPCGLPPEREDD 87

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225433167|ref|XP_002285284.1| PREDICTED: uncharacterized protein At3g23325 [Vitis vinifera] gi|296083670|emb|CBI23659.3| unnamed protein product [Vitis vinifera]

 Score =  177 bits (448), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 82/85 (96%), Positives = 84/85 (98%)

Query: 1  ASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFSIAENES 60
          ASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYP+LAYF+IAENES
Sbjct: 3  ASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPLLAYFAIAENES 62

Query: 61 IGREHYNFMQKMLLPCGLPPEREDD 85
          IGRE YNFMQKMLLPCGLPPEREDD
Sbjct: 63 IGRERYNFMQKMLLPCGLPPEREDD 87

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224099925|ref|XP_002311676.1| predicted protein [Populus trichocarpa] gi|118483982|gb|ABK93878.1| unknown [Populus trichocarpa] gi|222851496|gb|EEE89043.1| predicted protein [Populus trichocarpa]

 Score =  175 bits (444), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 80/85 (94%), Positives = 84/85 (98%)

Query: 1  ASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFSIAENES 60
          ASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASY+GHYP+LAYF++AENES
Sbjct: 3  ASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFALAENES 62

Query: 61 IGREHYNFMQKMLLPCGLPPEREDD 85
          IGRE YNFMQKMLLPCGLPPEREDD
Sbjct: 63 IGRERYNFMQKMLLPCGLPPEREDD 87

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255575885|ref|XP_002528840.1| Splicing factor 3B subunit, putative [Ricinus communis] gi|223531752|gb|EEF33574.1| Splicing factor 3B subunit, putative [Ricinus communis]

 Score =  175 bits (443), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 80/85 (94%), Positives = 84/85 (98%)

Query: 1  ASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFSIAENES 60
          ASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDS+ASY+GHYP+LAYF+IAENES
Sbjct: 3  ASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSFASYIGHYPMLAYFAIAENES 62

Query: 61 IGREHYNFMQKMLLPCGLPPEREDD 85
          IGRE YNFMQKMLLPCGLPPEREDD
Sbjct: 63 IGRERYNFMQKMLLPCGLPPEREDD 87

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116779103|gb|ABK21141.1| unknown [Picea sitchensis] gi|116780938|gb|ABK21889.1| unknown [Picea sitchensis] gi|116784251|gb|ABK23273.1| unknown [Picea sitchensis] gi|224284968|gb|ACN40213.1| unknown [Picea sitchensis]

 Score =  175 bits (443), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 80/85 (94%), Positives = 84/85 (98%)

Query: 1  ASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFSIAENES 60
          ASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYP+LAYF++AENES
Sbjct: 3  ASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPLLAYFAVAENES 62

Query: 61 IGREHYNFMQKMLLPCGLPPEREDD 85
          IGRE YNFMQKMLLPCGLPPERE+D
Sbjct: 63 IGRERYNFMQKMLLPCGLPPEREED 87

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297726259|ref|NP_001175493.1| Os08g0278966 [Oryza sativa Japonica Group] gi|255678317|dbj|BAH94221.1| Os08g0278966 [Oryza sativa Japonica Group]

 Score =  175 bits (443), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 79/85 (92%), Positives = 84/85 (98%)

Query: 1   ASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFSIAENES 60
           ASDRFNINSQLEHLQAKYVGTGHADLNRFEWA+NIQRDSYASY+GHYP+LAYF+IAENES
Sbjct: 33  ASDRFNINSQLEHLQAKYVGTGHADLNRFEWALNIQRDSYASYIGHYPVLAYFAIAENES 92

Query: 61  IGREHYNFMQKMLLPCGLPPEREDD 85
           IGRE YNFMQKMLLPCGLPPERE+D
Sbjct: 93  IGRERYNFMQKMLLPCGLPPEREED 117

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224107437|ref|XP_002314479.1| predicted protein [Populus trichocarpa] gi|118485228|gb|ABK94474.1| unknown [Populus trichocarpa] gi|222863519|gb|EEF00650.1| predicted protein [Populus trichocarpa]

 Score =  174 bits (442), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 80/85 (94%), Positives = 84/85 (98%)

Query: 1  ASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFSIAENES 60
          ASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASY+GHYP+LAYF++AENES
Sbjct: 3  ASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYMGHYPMLAYFALAENES 62

Query: 61 IGREHYNFMQKMLLPCGLPPEREDD 85
          IGRE YNFMQKMLLPCGLPPEREDD
Sbjct: 63 IGRERYNFMQKMLLPCGLPPEREDD 87

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115476652|ref|NP_001061922.1| Os08g0444100 [Oryza sativa Japonica Group] gi|42407437|dbj|BAD10044.1| splicing factor 3B subunit 5-like protein [Oryza sativa Japonica Group] gi|113623891|dbj|BAF23836.1| Os08g0444100 [Oryza sativa Japonica Group] gi|215707157|dbj|BAG93617.1| unnamed protein product [Oryza sativa Japonica Group]

 Score =  174 bits (441), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 80/85 (94%), Positives = 84/85 (98%)

Query: 1  ASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFSIAENES 60
          ASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASY+GHYP+LAYFSIAENES
Sbjct: 3  ASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFSIAENES 62

Query: 61 IGREHYNFMQKMLLPCGLPPEREDD 85
          IGRE YNFMQKMLLPCGLPPER++D
Sbjct: 63 IGRERYNFMQKMLLPCGLPPERDED 87

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297800812|ref|XP_002868290.1| hypothetical protein ARALYDRAFT_493471 [Arabidopsis lyrata subsp. lyrata] gi|297314126|gb|EFH44549.1| hypothetical protein ARALYDRAFT_493471 [Arabidopsis lyrata subsp. lyrata]

 Score =  172 bits (435), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 78/85 (91%), Positives = 84/85 (98%)

Query: 1  ASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFSIAENES 60
          ASDRFNINSQLEHLQAKYVGTGHADL+RFEWAVNIQRDSYASY+GHYP+L+YF+IAENES
Sbjct: 3  ASDRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASYIGHYPMLSYFAIAENES 62

Query: 61 IGREHYNFMQKMLLPCGLPPEREDD 85
          IGRE YNFMQKMLLPCGLPPERED+
Sbjct: 63 IGRERYNFMQKMLLPCGLPPEREDE 87

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	85
TAIR|locus:1005716320	87	AT4G14342 "AT4G14342" [Arabido	1.0	0.977	0.905	3.3e-40
TAIR|locus:505006364	87	AT3G23325 "AT3G23325" [Arabido	1.0	0.977	0.905	3.3e-40
FB|FBgn0040534	85	CG11985 [Drosophila melanogast	0.976	0.976	0.638	1.2e-26
UNIPROTKB|E1C5A2	86	SF3B5 "Uncharacterized protein	0.988	0.976	0.595	1.4e-25
UNIPROTKB|Q56K13	86	SF3B5 "Splicing factor 3B subu	0.988	0.976	0.583	3.6e-25
UNIPROTKB|Q9BWJ5	86	SF3B5 "Splicing factor 3B subu	0.988	0.976	0.583	3.6e-25
MGI|MGI:1913375	86	Sf3b5 "splicing factor 3b, sub	0.988	0.976	0.571	4.2e-24
RGD|1586993	86	Sf3b5 "splicing factor 3b, sub	0.988	0.976	0.571	4.2e-24
DICTYBASE|DDB_G0271312	94	sf3b5 "splicing factor 3B subu	0.988	0.893	0.559	7.8e-23
POMBASE|SPBC211.05	85	sab10 "splicing factor 3B (pre	0.929	0.929	0.455	2e-15

TAIR|locus:1005716320 AT4G14342 "AT4G14342" [Arabidopsis thaliana (taxid:3702)]

 Score = 428 (155.7 bits), Expect = 3.3e-40, P = 3.3e-40
 Identities = 77/85 (90%), Positives = 84/85 (98%)

Query:     1 ASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFSIAENES 60
             ASDRFNINSQLEHLQAKYVGTGHADL+RFEWAVNIQRDSYASY+GHYP+L+YF+IAENES
Sbjct:     3 ASDRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASYIGHYPMLSYFAIAENES 62

Query:    61 IGREHYNFMQKMLLPCGLPPEREDD 85
             IGRE YNFMQKMLLPCGLPPERE++
Sbjct:    63 IGRERYNFMQKMLLPCGLPPEREEE 87

GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:505006364 AT3G23325 "AT3G23325" [Arabidopsis thaliana (taxid:3702)]

 Score = 428 (155.7 bits), Expect = 3.3e-40, P = 3.3e-40
 Identities = 77/85 (90%), Positives = 83/85 (97%)

Query:     1 ASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFSIAENES 60
             ASDRFNINSQLEHLQAKYVGTGHADL+RFEW VNIQRDSYASY+GHYP+L+YF+IAENES
Sbjct:     3 ASDRFNINSQLEHLQAKYVGTGHADLSRFEWTVNIQRDSYASYIGHYPMLSYFAIAENES 62

Query:    61 IGREHYNFMQKMLLPCGLPPEREDD 85
             IGRE YNFMQKMLLPCGLPPERED+
Sbjct:    63 IGRERYNFMQKMLLPCGLPPEREDE 87

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0006397 "mRNA processing" evidence=ISS

FB|FBgn0040534 CG11985 [Drosophila melanogaster (taxid:7227)]

 Score = 300 (110.7 bits), Expect = 1.2e-26, P = 1.2e-26
 Identities = 53/83 (63%), Positives = 66/83 (79%)

Query:     3 DRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFSIAENESIG 62
             +R+NI+SQLEHLQ+KY+GTGHAD  +FEW  N  RDS ASY+GHY IL YF+IAENES  
Sbjct:     3 ERYNIHSQLEHLQSKYIGTGHADTTKFEWLTNQHRDSLASYMGHYDILNYFAIAENESKA 62

Query:    63 REHYNFMQKMLLPCGLPPEREDD 85
             R  +N M++ML PCG PPE+ +D
Sbjct:    63 RVRFNLMERMLQPCGPPPEKLED 85

GO:0005634 "nucleus" evidence=ISS

GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;ISS

GO:0007052 "mitotic spindle organization" evidence=IMP

GO:0071011 "precatalytic spliceosome" evidence=IDA

GO:0005686 "U2 snRNP" evidence=IDA

UNIPROTKB|E1C5A2 SF3B5 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 290 (107.1 bits), Expect = 1.4e-25, P = 1.4e-25
 Identities = 50/84 (59%), Positives = 66/84 (78%)

Query:     2 SDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFSIAENESI 61
             +DR+ I+SQLEHLQ+KY+GTGHAD  ++EW VN  RDSY SY+GH+ +L YF+IAENES 
Sbjct:     2 TDRYTIHSQLEHLQSKYIGTGHADTTKWEWLVNQHRDSYCSYMGHFDLLNYFAIAENESK 61

Query:    62 GREHYNFMQKMLLPCGLPPEREDD 85
              R  +N M+KML PCG P ++ D+
Sbjct:    62 ARVRFNLMEKMLQPCGPPADKPDE 85

GO:0005689 "U12-type spliceosomal complex" evidence=IEA

UNIPROTKB|Q56K13 SF3B5 "Splicing factor 3B subunit 5" [Bos taurus (taxid:9913)]

 Score = 286 (105.7 bits), Expect = 3.6e-25, P = 3.6e-25
 Identities = 49/84 (58%), Positives = 66/84 (78%)

Query:     2 SDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFSIAENESI 61
             +DR+ I+SQLEHLQ+KY+GTGHAD  ++EW VN  RDSY SY+GH+ +L YF+IAENES 
Sbjct:     2 TDRYTIHSQLEHLQSKYIGTGHADTTKWEWLVNQHRDSYCSYMGHFDLLNYFAIAENESK 61

Query:    62 GREHYNFMQKMLLPCGLPPEREDD 85
              R  +N M+KML PCG P ++ ++
Sbjct:    62 ARVRFNLMEKMLQPCGPPADKPEE 85

GO:0005689 "U12-type spliceosomal complex" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

UNIPROTKB|Q9BWJ5 SF3B5 "Splicing factor 3B subunit 5" [Homo sapiens (taxid:9606)]

 Score = 286 (105.7 bits), Expect = 3.6e-25, P = 3.6e-25
 Identities = 49/84 (58%), Positives = 66/84 (78%)

Query:     2 SDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFSIAENESI 61
             +DR+ I+SQLEHLQ+KY+GTGHAD  ++EW VN  RDSY SY+GH+ +L YF+IAENES 
Sbjct:     2 TDRYTIHSQLEHLQSKYIGTGHADTTKWEWLVNQHRDSYCSYMGHFDLLNYFAIAENESK 61

Query:    62 GREHYNFMQKMLLPCGLPPEREDD 85
              R  +N M+KML PCG P ++ ++
Sbjct:    62 ARVRFNLMEKMLQPCGPPADKPEE 85

GO:0005689 "U12-type spliceosomal complex" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0000398 "mRNA splicing, via spliceosome" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0008380 "RNA splicing" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

MGI|MGI:1913375 Sf3b5 "splicing factor 3b, subunit 5" [Mus musculus (taxid:10090)]

 Score = 276 (102.2 bits), Expect = 4.2e-24, P = 4.2e-24
 Identities = 48/84 (57%), Positives = 65/84 (77%)

Query:     2 SDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFSIAENESI 61
             +DR+ I+SQLEHLQ+KY+GTGHAD  ++EW VN  RDSY SY+GH+ +L YF+IAENES 
Sbjct:     2 TDRYTIHSQLEHLQSKYIGTGHADTTKWEWLVNQHRDSYCSYMGHFDLLNYFAIAENESK 61

Query:    62 GREHYNFMQKMLLPCGLPPEREDD 85
              R  +N M+KML P G P ++ ++
Sbjct:    62 ARVRFNLMEKMLQPSGPPADKPEE 85

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005681 "spliceosomal complex" evidence=IEA

GO:0005689 "U12-type spliceosomal complex" evidence=ISO

GO:0006397 "mRNA processing" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

RGD|1586993 Sf3b5 "splicing factor 3b, subunit 5" [Rattus norvegicus (taxid:10116)]

 Score = 276 (102.2 bits), Expect = 4.2e-24, P = 4.2e-24
 Identities = 48/84 (57%), Positives = 65/84 (77%)

Query:     2 SDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFSIAENESI 61
             +DR+ I+SQLEHLQ+KY+GTGHAD  ++EW VN  RDSY SY+GH+ +L YF+IAENES 
Sbjct:     2 TDRYTIHSQLEHLQSKYIGTGHADTTKWEWLVNQHRDSYCSYMGHFDLLNYFAIAENESK 61

Query:    62 GREHYNFMQKMLLPCGLPPEREDD 85
              R  +N M+KML P G P ++ ++
Sbjct:    62 ARVRFNLMEKMLQPSGPPADKPEE 85

GO:0005634 "nucleus" evidence=ISO

GO:0005689 "U12-type spliceosomal complex" evidence=IEA;ISO

DICTYBASE|DDB_G0271312 sf3b5 "splicing factor 3B subunit 10 family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
 Identities = 47/84 (55%), Positives = 64/84 (76%)

Query:     2 SDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFSIAENESI 61
             S+R ++NSQLEHLQ +YVGTGHAD+++ EW  N  RDS +S++GH   L+ FSIAENES+
Sbjct:     2 SERESLNSQLEHLQMRYVGTGHADISKHEWLTNQHRDSLSSFIGHSSFLSLFSIAENESV 61

Query:    62 GREHYNFMQKMLLPCGLPPEREDD 85
             GR  YN + KM+ PCG  P+ +D+
Sbjct:    62 GRVRYNTLTKMISPCGPAPKIKDN 85

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005686 "U2 snRNP" evidence=ISS

GO:0008380 "RNA splicing" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0005681 "spliceosomal complex" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

POMBASE|SPBC211.05 sab10 "splicing factor 3B (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 194 (73.4 bits), Expect = 2.0e-15, P = 2.0e-15
 Identities = 36/79 (45%), Positives = 52/79 (65%)

Query:     2 SDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFSIAENESI 61
             +DR    ++LE LQA+YVG G+A   ++EW VN  RD+ +S VGH P+LAY + A  E  
Sbjct:     2 ADRLRSQAKLEQLQARYVGVGNAFTTKYEWMVNQHRDTLSSVVGHPPLLAYMATALGEPR 61

Query:    62 GREHYNFMQKMLLPCGLPP 80
              +   N ++KM++PCG PP
Sbjct:    62 VQVRKNLLEKMIMPCGPPP 80


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.136   0.418    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       85        85   0.00091  102 3  11 22  0.45    29
                                                     29  0.46    30


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  547 (58 KB)
  Total size of DFA:  115 KB (2076 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  9.34u 0.14s 9.48t   Elapsed:  00:00:00
  Total cpu time:  9.34u 0.14s 9.48t   Elapsed:  00:00:00
  Start:  Fri May 10 23:57:56 2013   End:  Fri May 10 23:57:56 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0005681 "spliceosomal complex" evidence=ISS

GO:0005829 "cytosol" evidence=IDA

GO:0045292 "mRNA cis splicing, via spliceosome" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LW64	SF3BA_ARATH	No assigned EC number	0.9058	1.0	0.9770	yes	no
Q923D4	SF3B5_MOUSE	No assigned EC number	0.5714	0.9882	0.9767	yes	no
P58728	SF3BB_ARATH	No assigned EC number	0.9058	1.0	0.9770	yes	no
Q56K13	SF3B5_BOVIN	No assigned EC number	0.5833	0.9882	0.9767	yes	no
Q9VHI4	SF3B5_DROME	No assigned EC number	0.6385	0.9764	0.9764	yes	no
Q9BWJ5	SF3B5_HUMAN	No assigned EC number	0.5833	0.9882	0.9767	yes	no
Q55BF5	SF3B5_DICDI	No assigned EC number	0.5595	0.9882	0.8936	yes	no
Q9P7R6	YHV5_SCHPO	No assigned EC number	0.4556	0.9294	0.9294	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00020286001	SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (109 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00023361001	SubName- Full=Chromosome chr8 scaffold_29, whole genome shotgun sequence; (522 aa)					•	•			0.961
	GSVIVG00029524001	SubName- Full=Chromosome chr13 scaffold_48, whole genome shotgun sequence; (1201 aa)				•	•	•			0.958
	GSVIVG00017245001	SubName- Full=Putative uncharacterized protein (Chromosome chr6 scaffold_15, whole genome shotg [...] (125 aa)				•	•	•			0.926
	GSVIVG00010279001	SubName- Full=Chromosome undetermined scaffold_252, whole genome shotgun sequence; (561 aa)						•			0.895
	GSVIVG00024968001	SubName- Full=Chromosome chr4 scaffold_32, whole genome shotgun sequence; (373 aa)						•			0.893
	GSVIVG00002744001	SubName- Full=Chromosome chr1 scaffold_135, whole genome shotgun sequence; (78 aa)				•		•			0.820
	GSVIVG00028128001	SubName- Full=Chromosome chr7 scaffold_42, whole genome shotgun sequence; (771 aa)						•			0.800
	GSVIVG00023663001	SubName- Full=Chromosome chr7 scaffold_31, whole genome shotgun sequence; (97 aa)				•		•			0.785
	GSVIVG00017697001	SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (86 aa)				•		•			0.784
	GSVIVG00021594001	SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (80 aa)				•		•			0.762

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	85
pfam07189	79	pfam07189, SF3b10, Splicing factor 3B subunit 10 (	1e-45

>gnl|CDD|148662 pfam07189, SF3b10, Splicing factor 3B subunit 10 (SF3b10)

 Score =  140 bits (355), Expect = 1e-45
 Identities = 49/79 (62%), Positives = 59/79 (74%)

Query: 3  DRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFSIAENESIG 62
          DR  I  QLEHLQ+KY+GTGHAD  ++EW  NI RD+YASY+GH   LAYF+IAENE   
Sbjct: 1  DRLRIQQQLEHLQSKYIGTGHADTTKWEWLTNIHRDTYASYIGHPSRLAYFAIAENEPKA 60

Query: 63 REHYNFMQKMLLPCGLPPE 81
          R  YN ++KML PCG PP+
Sbjct: 61 RVRYNMLEKMLQPCGPPPK 79

This family consists of several eukaryotic splicing factor 3B subunit 10 (SF3b10) proteins. SF3b10 is a 10 kDa subunit of the splicing factor SF3b. SF3b associates with the splicing factor SF3a and a 12S RNA unit to form the U2 small nuclear ribonucleoproteins complex. SF3b10 and SF3b14b are also thought to facilitate the interaction of U2 with the branch site. Length = 79

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	85
PF07189	79	SF3b10: Splicing factor 3B subunit 10 (SF3b10); In	100.0
KOG3485	86	consensus Uncharacterized conserved protein [Funct	100.0
PF10022	361	DUF2264: Uncharacterized protein conserved in bact	85.53

>PF07189 SF3b10: Splicing factor 3B subunit 10 (SF3b10); InterPro: IPR009846 This family consists of several eukaryotic splicing factor 3B subunit 5 (SF3b5) proteins

Probab=100.00  E-value=3.5e-57  Score=296.19  Aligned_cols=79  Identities=58%  Similarity=1.047  Sum_probs=78.4

Q ss_pred             hhHhHHHHHHHHHhhhcCCCCCCccHHHHHHHhhhhhHhhhhCChhHHHHHHHhhCcchHHHHHHHHHHhhCCCCCCCC
Q 048367            3 DRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFSIAENESIGREHYNFMQKMLLPCGLPPE   81 (85)
Q Consensus         3 dk~~~~~qle~Lq~KY~GtG~~dTTk~EW~tnihRDT~aS~~gH~~lL~Y~aiaenes~~r~r~~ll~kM~~pcg~pp~   81 (85)
                      ||+|+++||||||+||+||||+|||||||++||||||||||+||++||+|||||+|||++|+|++||+||+|||||||+
T Consensus         1 Dk~~~~~qle~Lq~KY~GtG~~dTTk~EW~tnihRDT~aS~~gH~~lL~Y~aia~ne~~~r~r~~ll~kM~~p~g~pp~   79 (79)
T PF07189_consen    1 DKYRIQQQLEHLQSKYVGTGHADTTKEEWLTNIHRDTYASIIGHPDLLEYFAIAENESKARVRFNLLEKMVQPCGPPPP   79 (79)
T ss_pred             ChhhHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHhcCHHHHHHHHHhcCCCHHHHHHHHHHHHhccCCCCCC
Confidence            8999999999999999999999999999999999999999999999999999999999999999999999999999996

SF3b5 is a 10 kDa subunit of the splicing factor SF3b. SF3b associates with the splicing factor SF3a and a 12S RNA unit to form the U2 small nuclear ribonucleoproteins complex. SF3b5 and SF3b14b are also thought to facilitate the interaction of U2 with the branch site []. Also included in this entry is RDS3 complex subunit 10, another protein involved in mRNA splicing [].

>KOG3485 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=8.3e-51  Score=268.84  Aligned_cols=83  Identities=67%  Similarity=1.204  Sum_probs=79.6

Q ss_pred             chhHhHHHHHHHHHhhhcCCCCCCccHHHHHHHhhhhhHhhhhCChhHHHHHHHhhCcchHHHHHHHHHHhhCCCCC-CC
Q 048367            2 SDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFSIAENESIGREHYNFMQKMLLPCGL-PP   80 (85)
Q Consensus         2 ~dk~~~~~qle~Lq~KY~GtG~~dTTk~EW~tnihRDT~aS~~gH~~lL~Y~aiaenes~~r~r~~ll~kM~~pcg~-pp   80 (85)
                      +|||++++||||||+||+||||+||||+||++||||||++|++||+++|.||+||||||++|+|+|+|+||++|||| ||
T Consensus         2 ~dRf~i~aqLEhLQskYvGtg~a~~tk~ew~vnq~RdS~~S~vgh~~~l~Y~a~ae~Ep~~rvr~N~lekml~pcg~wpp   81 (86)
T KOG3485|consen    2 GDRFNIHAQLEHLQSKYVGTGHADTTKFEWLVNQHRDSLASYVGHYPLLNYFAIAENEPKARVRFNLLEKMLQPCGPWPP   81 (86)
T ss_pred             cchhhHHHHHHHHHHHhhcccccccchHHHHHhcchhhhhhhcCCchHHHHHHHhccCchhhhhhcHHHHhhcccCCCCC
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999 55


Q ss_pred             CCCC
Q 048367           81 ERED   84 (85)
Q Consensus        81 ~~~~   84 (85)
                      ++++
T Consensus        82 ~~e~   85 (86)
T KOG3485|consen   82 EKEE   85 (86)
T ss_pred             cccc
Confidence            5554

>PF10022 DUF2264: Uncharacterized protein conserved in bacteria (DUF2264); InterPro: IPR016624 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=85.53  E-value=2.5  Score=33.92  Aligned_cols=75  Identities=27%  Similarity=0.360  Sum_probs=58.6

Q ss_pred             chhHhHHHHHHHHHhhhcCCCCCCccHHHHHHHhhhhhHhhhhCChhHHHHHHHhhCcchH---HHHHH------HHHHh
Q 048367            2 SDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFSIAENESIG---REHYN------FMQKM   72 (85)
Q Consensus         2 ~dk~~~~~qle~Lq~KY~GtG~~dTTk~EW~tnihRDT~aS~~gH~~lL~Y~aiaenes~~---r~r~~------ll~kM   72 (85)
                      .|..++..-++.+.+=|+|=|=-.-..     +-|.|=|+|.+-|+-+|-|..++....+.   +.+.+      -.+.|
T Consensus       172 ~d~~~i~~~l~~~e~~Y~GdGWY~DG~-----~~~~DYYns~aih~y~l~~~~~~~~~~~~~~~~~~~Ra~~fa~~~~~~  246 (361)
T PF10022_consen  172 YDEERIDYDLERIEEWYLGDGWYSDGP-----EFQFDYYNSWAIHPYLLLYARLMGDEDPERAARYRQRAQRFAEDYERM  246 (361)
T ss_pred             CcHHHHHHHHHHHHHHhccCCccccCC-----ccCCcchHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHH
Confidence            366788889999999999998544333     67999999999999999999999977633   33332      35789


Q ss_pred             hCCCCCCCC
Q 048367           73 LLPCGLPPE   81 (85)
Q Consensus        73 ~~pcg~pp~   81 (85)
                      +.|.|.+|+
T Consensus       247 f~~dG~~~~  255 (361)
T PF10022_consen  247 FSPDGAAPP  255 (361)
T ss_pred             cCCCCCcCC
Confidence            999996664

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00