Citrus Sinensis ID: 048384

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------54
MKALKRSHTSSSSSNNNNSSSSSSPSSSSSSSSSSWVHLRSVLFVVTSSSPASCSSSDRTGRLKSPWSRRKRKLPLSPQQWRSLFTSDGKFRDGGVKFLKKVRSRGVDPSIRVEVWPFLLGVYDLNSTKEEREIIRTQKRKEYEKLRRECRRLLKRGNGSLKLKEISETGYSGDSGSVLQDTDTSSSEDVVSARESLSSEERSQDAEYSDDPSSILLDGKLSSDSDSSEDPEVIHAFSCSEDGEENNPDEAPNENIPLTNTEVRDKLRATEDFATWQRIIRLDAVRANSEWITYCPSQATVSEVRARRSAEAVGLKDYDHLEPCRIFHAARLVAILEAYALYDPEIGYCQGMSDLLSPITAVITEDHEAFWCFVGFMKKARHNFRLDEVGIRRQLSIVSKIIKVKDSHLYRHLEKLQAEDCFFVYRMVVVLFRRELSFEQTLCLWEVMWADQAAIRAGIGKSAWSRIRQRAPPTDDLLLYAIAASVLKRRKLIIEKYSSMDEILRECNSMAGQLDVWKLLDDAHDLVVTLHDKIERSL
cccccccccccccccccccccccccccccccccccccccccHHEEccccccccccccccccccccccccccccccccHHHHHHHHcccccccccHHHHHHHHHcccccccHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccHHHHHHHHccccHHHHHHHHHHHHHHHcccccccccccccHHHHHHHcccHHcccccccccccccHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHcccHHHHHHHHHHHHHcHHcccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHcccccccHHHHHHHHHHHHccccccHHHHHHHHHHcHHHHHHHcccHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHcc
cccHHccccccccccccccccccccccccccccccHEEEEEEEEEEEccccccccccccccccccccccccccccccHHHHHHHccccccccccHHHHHHHHHcccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcHHccccHEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHEEEEccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcHHHHHHHHHcccccEEEEHEEEEHHHHHHccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccc
mkalkrshtsssssnnnnsssssspsssssssssswVHLRSVLFVVtssspascsssdrtgrlkspwsrrkrklplspqqwrslftsdgkfrdGGVKFLKKVrsrgvdpsirveVWPFLlgvydlnstkEEREIIRTQKRKEYEKLRRECRRLLKRgngslklkeisetgysgdsgsvlqdtdtssseDVVSARESlsseersqdaeysddpssilldgklssdsdssedpevihafscsedgeennpdeapnenipltntEVRDKLRATEDFATWQRIIRLDAVransewitycpsqatVSEVRARRSAeavglkdydhlepcrIFHAARLVAILEAYalydpeigycqgmsdlLSPITAVITEDHEAFWCFVGFMKKarhnfrldevgIRRQLSIVSKIIKVKDSHLYRHLEklqaedcfFVYRMVVVLFRRELSFEQTLCLWEVMWADQAAIRAGIGKSawsrirqrapptddLLLYAIAASVLKRRKLIIEKYSSMDEILRECNSMAGQLDVWKLLDDAHDLVVTLHDKIERSL
mkalkrshtsssssnnnnsssssspsssssssssSWVHLRSVLFVVTssspascsssdrtgrlkspwsrrkrklplspqqwrslftsdgkfrdgGVKFLkkvrsrgvdpsirvevwpfllgvydlnstkeereiirtqkrkeyeklRRECRrllkrgngslklkeisetgysgdsgsvlqdtdtsssEDVVSAReslsseersqdaeysddpssilLDGKLSSDSDSSEDPEVIHAFScsedgeennpdeapnenipltntEVRDKLRATEDFATWQRIIRLDavransewitycpsqatvseVRARRSAEAvglkdydhlePCRIFHAARLVAILEAYALYDPEIGYCQGMSDLLSPITAVITEDHEAFWCFVGFMKKARHnfrldevgirrqlsivSKIIKVKDSHLYRHLeklqaedcffVYRMVVVLFRRELSFEQTLCLWEVMWADQAAIRAGIgksawsrirqrapptddlLLYAIAASVLKRRKLIIEKYSSMDEILRECNSMAGQLDVWKLLDDAHDLVVTLhdkiersl
MKALKRSHTsssssnnnnsssssspssssssssssWVHLRSVLFVVTssspascsssDRTGRLKSPWSRRKRKLPLSPQQWRSLFTSDGKFRDGGVKFLKKVRSRGVDPSIRVEVWPFLLGVYDLNSTKEEREIIRTQkrkeyeklrrecrrllkrGNGSLKLKEISETGYSGDSGSVLQdtdtsssedvvsareslsseersQDAEYSDDPssilldgklssdsdssEDPEVIHAFSCSedgeennpdeapnenIPLTNTEVRDKLRATEDFATWQRIIRLDAVRANSEWITYCPSQATVSEVRARRSAEAVGLKDYDHLEPCRIFHAARLVAILEAYALYDPEIGYCQGMSDLLSPITAVITEDHEAFWCFVGFMKKARHNFRLDEVGIRRQLSIVSKIIKVKDSHLYRHLEKLQAEDCFFVYRMVVVLFRRELSFEQTLCLWEVMWADQAAIRAGIGKSAWSRIRQRAPPTDDLLLYAIAASVLKRRKLIIEKYSSMDEILRECNSMAGQLDVWKLLDDAHDLVVTLHDKIERSL
***********************************WVHLRSVLFVV************************************SLFTSDGKFRDGGVKFLKKVRSRGVDPSIRVEVWPFLLGVYDLNS*******************************************************************************************************************************************LRATEDFATWQRIIRLDAVRANSEWITYCPSQATVSEVRARRSAEAVGLKDYDHLEPCRIFHAARLVAILEAYALYDPEIGYCQGMSDLLSPITAVITEDHEAFWCFVGFMKKARHNFRLDEVGIRRQLSIVSKIIKVKDSHLYRHLEKLQAEDCFFVYRMVVVLFRRELSFEQTLCLWEVMWADQAAIRAGIGKSAWSRIRQRAPPTDDLLLYAIAASVLKRRKLIIEKYSSMDEILRECNSMAGQLDVWKLLDDAHDLVVTLHD******
******************************************************************************QQWRSLFTSDGKFRDGGVKFLKKVRSRGVDPSIRVEVWPFLLGVYDLNSTKEEREIIRTQKRKEYEKLRRECRRLLKRGNGSLKLKEISETGYSGDSGSVLQDTDTSSSED*****************************************************************************LRATEDFATWQRII*****RA**EWITYCPSQATVSEVRARRSAEAVGLKDYDHLEPCRIFHAARLVAILEAYALYDPEIGYCQGMSDLLSPITAVITEDHEAFWCFVGFMKKARHNFRLDEVGIRRQLSIVSKIIKVKDSHLYRHLEKLQAEDCFFVYRMVVVLFRRELSFEQTLCLWEVMWADQAAIRAGIGKSAWSRIRQRAPPTDDLLLYAIAASVLKRRKLIIEKYSSMDEILRECNSMAGQLDVWKLLDDAHDLVVTLHDKIER**
************************************VHLRSVLFVVT******************************PQQWRSLFTSDGKFRDGGVKFLKKVRSRGVDPSIRVEVWPFLLGVYDLNSTKEEREIIRTQKRKEYEKLRRECRRLLKRGNGSLKLKEISETG******************************************SSILLDGK***********EVIHAFSC***********APNENIPLTNTEVRDKLRATEDFATWQRIIRLDAVRANSEWITYCPSQATVSEVRARRSAEAVGLKDYDHLEPCRIFHAARLVAILEAYALYDPEIGYCQGMSDLLSPITAVITEDHEAFWCFVGFMKKARHNFRLDEVGIRRQLSIVSKIIKVKDSHLYRHLEKLQAEDCFFVYRMVVVLFRRELSFEQTLCLWEVMWADQAAIRAGIGKSAWSRIRQRAPPTDDLLLYAIAASVLKRRKLIIEKYSSMDEILRECNSMAGQLDVWKLLDDAHDLVVTLHDKIERSL
**********************************SWVHLRSVLFVVTS**************************PLSPQQWRSLFTSDGKFRDGGVKFLKKVRSRGVDPSIRVEVWPFLLGVYDLNSTKEEREIIRTQKRKEYEKLRRECRRLLKRGNGS***K****************************************************************************************************************Q***RLDAVRANSEWITYCPSQATVSEVRARRSAEAVGLKDYDHLEPCRIFHAARLVAILEAYALYDPEIGYCQGMSDLLSPITAVITEDHEAFWCFVGFMKKARHNFRLDEVGIRRQLSIVSKIIKVKDSHLYRHLEKLQAEDCFFVYRMVVVLFRRELSFEQTLCLWEVMWADQAAIRAGIGKSAWSRIRQRAPPTDDLLLYAIAASVLKRRKLIIEKYSSMDEILRECNSMAGQLDVWKLLDDAHDLVVTLHDKIERSL
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MKALKRSHTSSSSSNNNNSSSSSSPSSSSSSSSSSWVHLRSVLFVVTSSSPASCSSSDRTGRLKSPWSRRKRKLPLSPQQWRSLFTSDGKFRDGGVKFLKKVRSRGVDPSIRVEVWPFLLGVYDLNSTxxxxxxxxxxxxxxxxxxxxxxxxxxxxGNGSLKLKEISETGYSGDSGSVLQDTDTSSSEDVVSARESLSSEERSQDAEYSDDPSSILLDGKLSSDSDSSEDPEVIHAFSCSEDGEENNPDEAPNENIPLTNTEVRDKLRATEDFATWQRIIRLDAVRANSEWITYCPSQATVSEVRARRSAEAVGLKDYDHLEPCRIFHAARLVAILEAYALYDPEIGYCQGMSDLLSPITAVITEDHEAFWCFVGFMKKARHNFRLDEVGIRRQLSIVSKIIKVKDSHLYRHLEKLQAEDCFFVYRMVVVLFRRELSFEQTLCLWEVMWADQAAIRAGIGKSAWSRIRQRAPPTDDLLLYAIAASVLKRRKLIIEKYSSMDEILRECNSMAGQLDVWKLLDDAHDLVVTLHDKIERSL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query538 2.2.26 [Sep-21-2011]
Q9UUH7743 GTPase-activating protein yes no 0.353 0.255 0.316 4e-28
P09379730 GTPase-activating protein yes no 0.349 0.257 0.317 4e-28
Q6FWI1745 GTPase-activating protein yes no 0.336 0.242 0.273 1e-25
Q6BU76757 GTPase-activating protein yes no 0.349 0.248 0.278 4e-25
P48365746 GTPase-activating protein yes no 0.312 0.225 0.303 5e-25
Q8TC07691 TBC1 domain family member yes no 0.308 0.240 0.322 5e-25
Q9CXF4671 TBC1 domain family member yes no 0.327 0.262 0.306 2e-24
Q3MII6 688 TBC1 domain family member no no 0.295 0.231 0.339 6e-21
A1A5B6 742 TBC1 domain family member no no 0.295 0.214 0.333 2e-20
Q8BYH7645 TBC1 domain family member no no 0.319 0.266 0.328 6e-19
>sp|Q9UUH7|GYP7_SCHPO GTPase-activating protein gyp7 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gyp7 PE=3 SV=1 Back     alignment and function desciption
 Score =  126 bits (317), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 68/215 (31%), Positives = 109/215 (50%), Gaps = 25/215 (11%)

Query: 305 RARRSAEAVGLKDYDHLEPCRIFHAARLVA-----ILEAYALYDPEIGYCQGMSDLLSPI 359
           R  R  E   ++D  H +P   F    +       IL  Y  YD E+GY QGMSDLL+PI
Sbjct: 481 RTDRQHEYFQIEDLPHPDPQSTFTGTNMNMEMMKDILLTYNEYDTELGYVQGMSDLLAPI 540

Query: 360 TAVITEDHEAFWCFVGFMKKARHNFRLDEVGIRRQLSIVSKIIKVKDSHLYRHLEKLQAE 419
                ++   FW  VG MK+   NF  D+ G+ RQL  +  +I+  D  L+ HLEK  + 
Sbjct: 541 YVTFNDNALTFWGMVGLMKRLHFNFLRDQSGMHRQLDTLRLLIEFMDPELFAHLEKTDSS 600

Query: 420 DCFFVYRMVVVLFRRELSFEQTLCLWEVMWADQAAIRAGIGKSAWSRIRQRAPPTDDLLL 479
           + F  +RM+++ F+RE  +E  L LW+V++ +  +    I                  + 
Sbjct: 601 NLFCFFRMLLIYFKREFDWEVLLKLWDVLFTNYLSYDYHI-----------------FVA 643

Query: 480 YAIAASVLKRRKLIIEKYSSMDEILRECNSMAGQL 514
           YAIA    + R++++ + S+ DE+L+  N ++G+L
Sbjct: 644 YAIAE---RHREVLLNQTSAFDEVLKYFNELSGKL 675
Most effectively accelerates the intrinsic GTPase activity of ypt7.
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)
>sp|P09379|GYP7_YARLI GTPase-activating protein GYP7 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=GYP7 PE=3 SV=2 Back     alignment and function description
>sp|Q6FWI1|GYP7_CANGA GTPase-activating protein GYP7 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=GYP7 PE=3 SV=1 Back     alignment and function description
>sp|Q6BU76|GYP7_DEBHA GTPase-activating protein GYP7 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=GYP7 PE=3 SV=2 Back     alignment and function description
>sp|P48365|GYP7_YEAST GTPase-activating protein GYP7 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GYP7 PE=1 SV=1 Back     alignment and function description
>sp|Q8TC07|TBC15_HUMAN TBC1 domain family member 15 OS=Homo sapiens GN=TBC1D15 PE=1 SV=2 Back     alignment and function description
>sp|Q9CXF4|TBC15_MOUSE TBC1 domain family member 15 OS=Mus musculus GN=Tbc1d15 PE=1 SV=1 Back     alignment and function description
>sp|Q3MII6|TBC25_HUMAN TBC1 domain family member 25 OS=Homo sapiens GN=TBC1D25 PE=1 SV=2 Back     alignment and function description
>sp|A1A5B6|TBC25_MOUSE TBC1 domain family member 25 OS=Mus musculus GN=Tbc1d25 PE=1 SV=1 Back     alignment and function description
>sp|Q8BYH7|TBC17_MOUSE TBC1 domain family member 17 OS=Mus musculus GN=Tbc1d17 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query538
225455274549 PREDICTED: small G protein signaling mod 0.979 0.959 0.762 0.0
225455272546 PREDICTED: small G protein signaling mod 0.979 0.965 0.760 0.0
356516109550 PREDICTED: GTPase-activating protein gyp 0.927 0.907 0.765 0.0
356509190555 PREDICTED: GTPase-activating protein gyp 0.927 0.899 0.761 0.0
225455270539 PREDICTED: small G protein signaling mod 0.942 0.940 0.737 0.0
357464069551 GTPase activator-like protein of Rab-lik 0.927 0.905 0.729 0.0
399920237589 GTPase-activating protein [Rosa rugosa] 0.910 0.831 0.734 0.0
449457007576 PREDICTED: GTPase-activating protein gyp 0.996 0.930 0.703 0.0
449515977577 PREDICTED: uncharacterized protein LOC10 0.996 0.928 0.700 0.0
255554357547 conserved hypothetical protein [Ricinus 0.933 0.917 0.767 0.0
>gi|225455274|ref|XP_002273720.1| PREDICTED: small G protein signaling modulator 2-like isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  788 bits (2034), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 420/551 (76%), Positives = 463/551 (84%), Gaps = 24/551 (4%)

Query: 1   MKALKRSHTSSSSSNNNNSSSSSSPSSSSSSSSSSWVHLRSVLFVVTSSSPASCSSSDRT 60
           M+AL+R+HTSSSSSN+++ SSSSS       SSSSW+HLRSVLFVV SSSPA   S DR 
Sbjct: 1   MRALRRTHTSSSSSNSSSPSSSSS-------SSSSWIHLRSVLFVVASSSPAYSCSPDR- 52

Query: 61  GRLKSPWSRRKRKLPLSPQQWRSLFTSDGKFRDGGVKFLKKVRSRGVDPSIRVEVWPFLL 120
           GRLKSPWSR+K+K  LSP+QWR++ T DGK RDGGVK +KKVRS GVDPSIR EVWPFLL
Sbjct: 53  GRLKSPWSRKKKKHALSPRQWRNMLTPDGKLRDGGVKLVKKVRSGGVDPSIRAEVWPFLL 112

Query: 121 GVYDLNSTKEEREIIRTQKRKEYEKLRRECRRLLKRGNGSLKLKEISETGYSGDSGSVLQ 180
           GVYDLNS+KEER+I++TQ RKEYEKLRRECRRLLK    S KLKE   T  +G++GS + 
Sbjct: 113 GVYDLNSSKEERDIVKTQNRKEYEKLRRECRRLLKHSGESYKLKESGGTCGNGENGSFIH 172

Query: 181 DTDTSSSEDVVSARESLSSEERSQDAEYSDDPSSILLDGK----------------LSSD 224
           DTD+  SEDVVSARESLSSEERS D EYSD PSS LL+G+                 SSD
Sbjct: 173 DTDSPDSEDVVSARESLSSEERSPDGEYSDHPSSTLLEGEDVSRRITCASSSVLNSESSD 232

Query: 225 SDSSEDPEVIHAFSCSEDGEENNPDEAPNENIPLTNTEVRDKLRATEDFATWQRIIRLDA 284
           SDSSEDP+V   F C E  EE++PD    E+   + TEV  K+R  EDFATWQRIIR+DA
Sbjct: 233 SDSSEDPDVSQTFPCMESREEDDPDMPTGEDSSPSKTEVHSKIRTAEDFATWQRIIRVDA 292

Query: 285 VRANSEWITYCPSQATVSEVRARRSAEAVGLKDYDHLEPCRIFHAARLVAILEAYALYDP 344
           VRANSEWI Y P+QA VSE RAR SAEAVGLKDYDHLEP RIFHAARLVAILEAYALYDP
Sbjct: 293 VRANSEWIPYSPAQAAVSEGRARCSAEAVGLKDYDHLEPSRIFHAARLVAILEAYALYDP 352

Query: 345 EIGYCQGMSDLLSPITAVITEDHEAFWCFVGFMKKARHNFRLDEVGIRRQLSIVSKIIKV 404
           EIGYCQGMSDLLSPI +VI EDHEAFWCFVGFM+KARHNFRLDE+GIRRQL+ VSKIIK 
Sbjct: 353 EIGYCQGMSDLLSPIISVILEDHEAFWCFVGFMRKARHNFRLDEIGIRRQLNTVSKIIKS 412

Query: 405 KDSHLYRHLEKLQAEDCFFVYRMVVVLFRRELSFEQTLCLWEVMWADQAAIRAGIGKSAW 464
           KDSHLYRHLEKLQAEDCFFVYRMVVVLFRRELSFEQT+CLWEVMWADQAA+RAGIGKSAW
Sbjct: 413 KDSHLYRHLEKLQAEDCFFVYRMVVVLFRRELSFEQTVCLWEVMWADQAAVRAGIGKSAW 472

Query: 465 SRIRQRAPPTDDLLLYAIAASVLKRRKLIIEKYSSMDEILRECNSMAGQLDVWKLLDDAH 524
           SRIRQRAPPTDDLLLYAIAASVL++RKLIIEKYSSMDEI+RECNSMAG LDVWKLL+DAH
Sbjct: 473 SRIRQRAPPTDDLLLYAIAASVLQKRKLIIEKYSSMDEIIRECNSMAGHLDVWKLLNDAH 532

Query: 525 DLVVTLHDKIE 535
           DLVV+LHDKIE
Sbjct: 533 DLVVSLHDKIE 543

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225455272|ref|XP_002273689.1| PREDICTED: small G protein signaling modulator 2-like isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356516109|ref|XP_003526739.1| PREDICTED: GTPase-activating protein gyp7-like [Glycine max] Back     alignment and taxonomy information
>gi|356509190|ref|XP_003523334.1| PREDICTED: GTPase-activating protein gyp7-like [Glycine max] Back     alignment and taxonomy information
>gi|225455270|ref|XP_002273781.1| PREDICTED: small G protein signaling modulator 2-like isoform 3 [Vitis vinifera] Back     alignment and taxonomy information
>gi|357464069|ref|XP_003602316.1| GTPase activator-like protein of Rab-like small GTPases [Medicago truncatula] gi|355491364|gb|AES72567.1| GTPase activator-like protein of Rab-like small GTPases [Medicago truncatula] Back     alignment and taxonomy information
>gi|399920237|gb|AFP55584.1| GTPase-activating protein [Rosa rugosa] Back     alignment and taxonomy information
>gi|449457007|ref|XP_004146240.1| PREDICTED: GTPase-activating protein gyp7-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449515977|ref|XP_004165024.1| PREDICTED: uncharacterized protein LOC101230658 [Cucumis sativus] Back     alignment and taxonomy information
>gi|255554357|ref|XP_002518218.1| conserved hypothetical protein [Ricinus communis] gi|223542623|gb|EEF44161.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query538
TAIR|locus:2168591577 AT5G53570 [Arabidopsis thalian 0.509 0.474 0.821 6e-159
TAIR|locus:2082901539 AT3G49350 [Arabidopsis thalian 0.501 0.500 0.855 6.9e-158
TAIR|locus:2152901528 AT5G24390 [Arabidopsis thalian 0.503 0.513 0.790 2.3e-146
TAIR|locus:2165710549 AT5G41940 [Arabidopsis thalian 0.494 0.484 0.827 1.6e-145
TAIR|locus:2136442436 AT4G27100 [Arabidopsis thalian 0.224 0.277 0.471 1.5e-39
TAIR|locus:2121353424 AT4G28550 [Arabidopsis thalian 0.224 0.285 0.455 2e-39
TAIR|locus:2160145432 AT5G54780 [Arabidopsis thalian 0.224 0.280 0.463 4.4e-39
TAIR|locus:2097573 720 AT3G59570 [Arabidopsis thalian 0.223 0.166 0.438 1.2e-37
TAIR|locus:2058228 745 AT2G43490 [Arabidopsis thalian 0.223 0.161 0.438 5.5e-37
TAIR|locus:2038922425 AT2G20440 [Arabidopsis thalian 0.224 0.284 0.422 3e-36
TAIR|locus:2168591 AT5G53570 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1191 (424.3 bits), Expect = 6.0e-159, Sum P(2) = 6.0e-159
 Identities = 226/275 (82%), Positives = 250/275 (90%)

Query:   261 TEVRDKLRATEDFATWQRIIRLDAVRANSEWITYCPSQATVSEVRARRSAEAVGLKDYDH 320
             +EV+ ++   EDF+TWQRIIRLDA+RA+SEW  Y P    ++E +ARR AE+VGLKDYDH
Sbjct:   296 SEVQVEVAVHEDFSTWQRIIRLDALRADSEWANYSPYSTAITESKARRLAESVGLKDYDH 355

Query:   321 LEPCRIFHAARLVAILEAYALYDPEIGYCQGMSDLLSPITAVITEDHEAFWCFVGFMKKA 380
             LE CR++HAARLVAILEAYA+YDPEIGYCQGMSDLLSPI AVI+EDHEAFWCFVGFMKKA
Sbjct:   356 LESCRLYHAARLVAILEAYAMYDPEIGYCQGMSDLLSPILAVISEDHEAFWCFVGFMKKA 415

Query:   381 RHNFRLDEVGIRRQLSIVSKIIKVKDSHLYRHLEKLQAEDCFFVYRMVVVLFRRELSFEQ 440
             RHNFRLDE GI+RQLSIVSKIIK KDS LY+HLE LQAEDC FVYRMV+V+FRRELSFEQ
Sbjct:   416 RHNFRLDEAGIQRQLSIVSKIIKNKDSQLYKHLENLQAEDCSFVYRMVLVMFRRELSFEQ 475

Query:   441 TLCLWEVMWADQAAIRAGIGKSAWSRIRQRAPPTDDLLLYAIAASVLKRRKLIIEKYSSM 500
             TLCLWEVMWADQAAIRAG+GKS WSRIRQ+APPTDDLLLYAIAA VL RRKLII+KYSSM
Sbjct:   476 TLCLWEVMWADQAAIRAGVGKSPWSRIRQQAPPTDDLLLYAIAALVL-RRKLIIQKYSSM 534

Query:   501 DEILRECNSMAGQLDVWKLLDDAHDLVVTLHDKIE 535
             DEI+ ECNSMAGQL+VWKLLDDAH LVVTLHDKIE
Sbjct:   535 DEIVEECNSMAGQLNVWKLLDDAHHLVVTLHDKIE 569
GO:0005097 "Rab GTPase activator activity" evidence=IEA
GO:0005622 "intracellular" evidence=IEA
GO:0005794 "Golgi apparatus" evidence=ISM
GO:0032313 "regulation of Rab GTPase activity" evidence=IEA
TAIR|locus:2082901 AT3G49350 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2152901 AT5G24390 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2165710 AT5G41940 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2136442 AT4G27100 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2121353 AT4G28550 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2160145 AT5G54780 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2097573 AT3G59570 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2058228 AT2G43490 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2038922 AT2G20440 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00037201001
SubName- Full=Chromosome chr16 scaffold_86, whole genome shotgun sequence; (513 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query538
smart00164216 smart00164, TBC, Domain in Tre-2, BUB2p, and Cdc16 2e-30
pfam00566206 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain 2e-29
COG5210496 COG5210, COG5210, GTPase-activating protein [Gener 3e-19
pfam0765595 pfam07655, Secretin_N_2, Secretin N-terminal domai 0.004
>gnl|CDD|214540 smart00164, TBC, Domain in Tre-2, BUB2p, and Cdc16p Back     alignment and domain information 
 Score =  117 bits (295), Expect = 2e-30
 Identities = 46/118 (38%), Positives = 76/118 (64%), Gaps = 1/118 (0%)

Query: 335 ILEAYALYDPEIGYCQGMSDLLSPITAVITEDHEAFWCFVGFMKKARHNFRLDEV-GIRR 393
           +L+AYALY+PE+GYCQGM+ L +P+  V+ ++ +AFWC V  M++   NF L ++ G++ 
Sbjct: 78  VLKAYALYNPEVGYCQGMNFLAAPLLLVMEDEEDAFWCLVKLMERYGPNFYLPDMSGLQL 137

Query: 394 QLSIVSKIIKVKDSHLYRHLEKLQAEDCFFVYRMVVVLFRRELSFEQTLCLWEVMWAD 451
            L  + +++K  D  LY+HL+ L      +  R  + LF REL  E  L +W+V++A+
Sbjct: 138 DLLQLDRLVKEYDPDLYKHLKDLGITPSLYALRWFLTLFARELPLEIVLRIWDVLFAE 195

Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases. Length = 216
>gnl|CDD|215997 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain Back     alignment and domain information
>gnl|CDD|227535 COG5210, COG5210, GTPase-activating protein [General function prediction only] Back     alignment and domain information
>gnl|CDD|219500 pfam07655, Secretin_N_2, Secretin N-terminal domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 538
KOG2197488 consensus Ypt/Rab-specific GTPase-activating prote 100.0
KOG2224781 consensus Uncharacterized conserved protein, conta 100.0
KOG4567370 consensus GTPase-activating protein [General funct 100.0
KOG1092484 consensus Ypt/Rab-specific GTPase-activating prote 100.0
KOG2058436 consensus Ypt/Rab GTPase activating protein [Intra 100.0
smart00164199 TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable R 100.0
COG5210496 GTPase-activating protein [General function predic 100.0
PF00566214 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR00 100.0
KOG2223586 consensus Uncharacterized conserved protein, conta 99.98
KOG2222 848 consensus Uncharacterized conserved protein, conta 99.96
KOG1091 625 consensus Ypt/Rab-specific GTPase-activating prote 99.96
KOG1093 725 consensus Predicted protein kinase (contains TBC a 99.92
KOG4347 671 consensus GTPase-activating protein VRP [General f 99.91
KOG4436 948 consensus Predicted GTPase activator NB4S/EVI5 (co 99.9
KOG2595395 consensus Predicted GTPase activator protein [Sign 99.9
KOG1102397 consensus Rab6 GTPase activator GAPCenA and relate 99.83
KOG2221267 consensus PDZ-domain interacting protein EPI64, co 99.7
KOG1648813 consensus Uncharacterized conserved protein, conta 99.49
KOG4436 948 consensus Predicted GTPase activator NB4S/EVI5 (co 99.36
KOG3636 669 consensus Uncharacterized conserved protein, conta 99.33
KOG2801 559 consensus Probable Rab-GAPs [Intracellular traffic 98.54
KOG2197488 consensus Ypt/Rab-specific GTPase-activating prote 98.34
PF149611296 BROMI: Broad-minded protein 96.36
KOG2224781 consensus Uncharacterized conserved protein, conta 89.65
>KOG2197 consensus Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins [Signal transduction mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=3.6e-50  Score=433.33  Aligned_cols=437  Identities=34%  Similarity=0.534  Sum_probs=322.4

Q ss_pred             CCCCcchheehheeeeccCCCCcccccCCCCCCCCCCccccCCCCCCHHHHHhhhccCCCCccchHHHHHHHHhCCCCcc
Q 048384           31 SSSSSWVHLRSVLFVVTSSSPASCSSSDRTGRLKSPWSRRKRKLPLSPQQWRSLFTSDGKFRDGGVKFLKKVRSRGVDPS  110 (538)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~W~~~f~~~Gr~~~~~~~~lk~v~~gGi~p~  110 (538)
                      +.+..|+|++++++...++++..+.+...-...+.+|..++++.++++++|.+.|+++|++.. .++++++|+.|||+|+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~f~~~~~~~~-~~~~l~~i~~~gi~ps   81 (488)
T KOG2197|consen    3 SESKQWDSLKSLLLSLDSSSFTVVDSREPCLSQSRIWVLIKPGKTLKPEKWQANFDPDGRLSG-FVKLLKLIILGGIDPS   81 (488)
T ss_pred             ccchhhhhcccceEEEeeccCccccccccccccCCcceeeccccccchhhhhhccCCCccccc-hhhhheeeecCCCCCc
Confidence            447799999999999998888885543333677779999999999999999999999999997 5899999999999999


Q ss_pred             hHHHHHHHhhCCCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCCCcccccccccccCCCCCCccccCCCCc----
Q 048384          111 IRVEVWPFLLGVYDLNSTKEEREIIRTQKRKEYEKLRRECRRLLKRGNGSLKLKEISETGYSGDSGSVLQDTDTSS----  186 (538)
Q Consensus       111 iR~eVW~fLLGvy~~~st~eEr~~i~~~~r~~Y~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  186 (538)
                      ||+|||+||||||+.++|.+||.+++..++.+|..|+.+|+.+.+...+.....          +.+...+..+|.    
T Consensus        82 ir~evw~fll~~y~~~~~~~~~~~~r~~~~~~~~~l~~~c~~~~~~~~~~~~~~----------~~~~~~~~~~p~~~~~  151 (488)
T KOG2197|consen   82 IRGEVWEFLLGCYDLDSTFEERNQLRVARRPQYNELLLVCQMMKSTVGNGLSYV----------VSSVVSDNRSPSLTLE  151 (488)
T ss_pred             ccchhHHHHhcccCCCCchHHHHHHHhhcccchHHHHHHcchhhhhhcccccee----------eeEEeecCCCCcchhh
Confidence            999999999999999999999999999999999999999999998633220100          011111111121    


Q ss_pred             -chhhh-hhhcccc-c-cccccCCcCCCCCccc---cccCCCCCCCCCCCchhhhhcccCCCCCCCCCCCCCCCCCCCCc
Q 048384          187 -SEDVV-SARESLS-S-EERSQDAEYSDDPSSI---LLDGKLSSDSDSSEDPEVIHAFSCSEDGEENNPDEAPNENIPLT  259 (538)
Q Consensus       187 -~~~~~-~~~~~~~-~-~~~~~~~~~~~~p~~~---~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (538)
                       ....+ ....... . ....+...+..+|...   -.+...++.+...++....... . .+     ......+-.+  
T Consensus       152 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~-----~~~~k~qW~~--  222 (488)
T KOG2197|consen  152 EYNSNAMREGRLDESVHQRERIFSGGLSKSLRAEVWKFLLDYSPWDSTTRERVSLRKL-T-DE-----YFRLKLQWSS--  222 (488)
T ss_pred             hhhhhhhhccccccchhhhheecccccccchhhhhhhhhhcccCcccccccccccccc-c-cc-----Hhhhhhhhee--
Confidence             00000 0000000 0 0000000001111000   0000111122211111000000 0 00     0000000000  


Q ss_pred             hhhhhhhhhcchhhhHHHHHHhhhhhhcCCCCccCCCCchhhhHHHHhhhhhhcccCCCCCCChhhhhHHHHHHHHHHHH
Q 048384          260 NTEVRDKLRATEDFATWQRIIRLDAVRANSEWITYCPSQATVSEVRARRSAEAVGLKDYDHLEPCRIFHAARLVAILEAY  339 (538)
Q Consensus       260 ~~~~~~~~~~~e~~~~~~~~I~~Dv~RT~~~~~~f~~~~~~~~~~~a~~~~e~~~l~d~~~~~~~~~~~~~~L~~IL~ay  339 (538)
                        ..+........+..+...|.+||.||++.+.+|+...                  +         .+...|.+||.+|
T Consensus       223 --~~~~~~~~~~~~~~~~~~i~~dv~rtDr~~~~~~~~~------------------n---------~~~~~l~~iL~ty  273 (488)
T KOG2197|consen  223 --TSPEQSPESEGYLERKSRIEKDVGRTDRSLEFYEGEE------------------N---------PHLARLVDILLTY  273 (488)
T ss_pred             --ccccccccccchhhhhhhhhhhccccchhhhhhhccc------------------c---------cCHHHHHHHHhhc
Confidence              0000001111245677889999999999999987521                  0         2467899999999


Q ss_pred             HhhCCCCCcccchhHhHHHHHHHhccchHHHHHHHHHhhhhcccCCCChhHHHHHHHHHHHHHHhhCHHHHHHHHhcCCC
Q 048384          340 ALYDPEIGYCQGMSDLLSPITAVITEDHEAFWCFVGFMKKARHNFRLDEVGIRRQLSIVSKIIKVKDSHLYRHLEKLQAE  419 (538)
Q Consensus       340 a~~~pdvGY~QGMndLaa~lL~v~~~E~~aFw~f~~lm~~~~~~f~~~~~gl~~~l~~l~~LL~~~dP~L~~hL~~~~i~  419 (538)
                      +.+++++||||||+|+++|++.++++|.+|||||+.+|+++.++|..++.|++.++..+..+++..||.||+||++++..
T Consensus       274 ~~~~~d~GY~QgmSDllspi~~v~~de~~aFwcFv~fm~~~~~nF~~d~~~~~~Ql~~~~~li~~~dp~l~~hLe~~d~~  353 (488)
T KOG2197|consen  274 AVYDFDLGYCQGMSDLLSPILIVMEDEVEAFWCFVGFMDRLRHNFRIDQSGMQTQLAQLSSLIQELDPRLYQHLEKLDAG  353 (488)
T ss_pred             ccccCccccccCchhhcCcceeeecCchHHHHHHHHHHHHHhhcCccccccHHHHhhhhhhhccccCHHHHhhccccCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhhHHHHHHhcCCCCCHHHHHHHHHHHHhhhhhhhhccccchhhhhccCCCCCchHHHHHHHHHHHHHHHHHHHhCCC
Q 048384          420 DCFFVYRMVVVLFRRELSFEQTLCLWEVMWADQAAIRAGIGKSAWSRIRQRAPPTDDLLLYAIAASVLKRRKLIIEKYSS  499 (538)
Q Consensus       420 ~~~f~~rW~l~lF~relp~~~vlrlWD~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~lf~iaa~ll~~r~~iL~~~~d  499 (538)
                      ..+|||||++++|+|||.++++++||+++|+....                    .+|++|.+.+++-+..+.++.+..+
T Consensus       354 ~~~f~fr~l~v~frrEf~~ed~l~LWEvlw~~~~~--------------------~~f~~~~~~~~l~~~~~~l~~~~~~  413 (488)
T KOG2197|consen  354 DLFFCFRMLLVPFRREFEFEDSLRLWEVLWTDLPS--------------------PHFHLYVAPAILNKDPQTLMEQGKS  413 (488)
T ss_pred             ccceeeehhhcccccccccccHHHHHHHHHhcCcc--------------------chHHHHHHHhhhhcchHHHHhcCcc
Confidence            99999999999999999999999999999998742                    3889998888887778888888888


Q ss_pred             HHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHhhcc
Q 048384          500 MDEILRECNSMAGQLDVWKLLDDAHDLVVTLHDKIER  536 (538)
Q Consensus       500 ~deil~~ln~l~~~idv~~lL~~A~~L~~~~~~~i~~  536 (538)
                      +++++++++.+..+.|+..++..|..+..+.+..++.
T Consensus       414 ~~e~l~~i~~~~~~~d~~~~~~~A~~~~~~~k~~~~~  450 (488)
T KOG2197|consen  414 FNEVLKHVNLLSEKADVLWVLVRAEALERQNKQMEEP  450 (488)
T ss_pred             chhHHhhcccccccchhhhHHHHHHHHHHHHHhcccc
Confidence            9999999999999999999999999998888776553

>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>KOG4567 consensus GTPase-activating protein [General function prediction only] Back     alignment and domain information
>KOG1092 consensus Ypt/Rab-specific GTPase-activating protein GYP1 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2058 consensus Ypt/Rab GTPase activating protein [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p Back     alignment and domain information
>COG5210 GTPase-activating protein [General function prediction only] Back     alignment and domain information
>PF00566 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR000195 Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, imply that these domains are GTPase activator proteins of Rab-like small GTPases [] Back     alignment and domain information
>KOG2223 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>KOG2222 consensus Uncharacterized conserved protein, contains TBC, SH3 and RUN domains [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>KOG1091 consensus Ypt/Rab-specific GTPase-activating protein GYP6 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only] Back     alignment and domain information
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only] Back     alignment and domain information
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only] Back     alignment and domain information
>KOG2595 consensus Predicted GTPase activator protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG1102 consensus Rab6 GTPase activator GAPCenA and related TBC domain proteins [General function prediction only] Back     alignment and domain information
>KOG2221 consensus PDZ-domain interacting protein EPI64, contains TBC domain [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1648 consensus Uncharacterized conserved protein, contains RUN, BRK and TBC domains [General function prediction only] Back     alignment and domain information
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only] Back     alignment and domain information
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only] Back     alignment and domain information
>KOG2801 consensus Probable Rab-GAPs [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2197 consensus Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>PF14961 BROMI: Broad-minded protein Back     alignment and domain information
>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query538
2g77_A410 Crystal Structure Of Gyp1 Tbc Domain In Complex Wit 2e-08
3dzx_A346 Crystal Structure Of The Rabgap Domain Of Human Tbc 4e-08
1fkm_A396 Crystal Structure Of The YptRAB-Gap Domain Of Gyp1p 8e-08
2qfz_A345 Crystal Structure Of Human Tbc1 Domain Family Membe 1e-06
3qye_A331 Crystal Structure Of Human Tbc1d1 Rabgap Domain Len 8e-06
3qyb_A301 X-Ray Crystal Structure Of Human Tbc1d4 (As160) Rab 4e-05
>pdb|2G77|A Chain A, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 410 Back     alignment and structure 
Iteration: 1

 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 63/144 (43%), Gaps = 28/144 (19%)
Query: 332 LVAILEAYALYDPEIGYCQGMSDLLSPI-----------------------TAVITE--- 365
           L  IL  +A+  P  GY QG++DL++P                        T ++ E   
Sbjct: 133 LQRILYLWAIRHPASGYVQGINDLVTPFFETFLTEYLPPSQIDDVKIKDPSTYMVDEQIT 192
Query: 366 DHEA--FWCFVGFMKKARHNFRLDEVGIRRQLSIVSKIIKVKDSHLYRHLEKLQAEDCFF 423
           D EA  FWC    +++   N+   + GI RQ+  +S+++K  D+ LY H +    E   F
Sbjct: 193 DLEADTFWCLTKLLEQITDNYIHGQPGILRQVKNLSQLVKRIDADLYNHFQNEHVEFIQF 252
Query: 424 VYRMVVVLFRRELSFEQTLCLWEV 447
            +R +  L  RE      + +W+ 
Sbjct: 253 AFRWMNCLLMREFQMGTVIRMWDT 276
>pdb|3DZX|A Chain A, Crystal Structure Of The Rabgap Domain Of Human Tbc1d22b Length = 346 Back     alignment and structure
>pdb|1FKM|A Chain A, Crystal Structure Of The YptRAB-Gap Domain Of Gyp1p Length = 396 Back     alignment and structure
>pdb|2QFZ|A Chain A, Crystal Structure Of Human Tbc1 Domain Family Member 22a Length = 345 Back     alignment and structure
>pdb|3QYE|A Chain A, Crystal Structure Of Human Tbc1d1 Rabgap Domain Length = 331 Back     alignment and structure
>pdb|3QYB|A Chain A, X-Ray Crystal Structure Of Human Tbc1d4 (As160) Rabgap Domain Length = 301 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query538
2qfz_A345 TBC1 domain family member 22A; RAB-GAP, GTPase act 2e-37
2qfz_A345 TBC1 domain family member 22A; RAB-GAP, GTPase act 9e-09
1fkm_A396 Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein 6e-36
1fkm_A396 Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein 3e-09
3qwl_A294 TBC1 domain family member 7; RAB GTPase activation 1e-19
2qq8_A334 TBC1 domain family member 14; structural genomics 3e-19
3hzj_A310 Rabgap1L, RAB GTPase-activating protein 1-like; st 1e-16
3qye_A331 TBC1 domain family member 1; rabgap, RAB, myocytes 6e-16
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-06
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A Length = 345 Back     alignment and structure
 Score =  140 bits (353), Expect = 2e-37
 Identities = 45/226 (19%), Positives = 89/226 (39%), Gaps = 48/226 (21%)

Query: 335 ILEAYALYDPEIGYCQGMSDLLSPITAVITED------------------------HEAF 370
           IL  +A+  P  GY QG++DL++P   V   +                         + +
Sbjct: 133 ILFIWAIRHPASGYVQGINDLVTPFFVVFICEYIEAEEVDTVDVSGVPAEVLCNIEADTY 192

Query: 371 WCFVGFMKKARHNFRLDEVGIRRQLSIVSKIIKVKDSHLYRHLEKLQAEDCFFVYRMVVV 430
           WC    +   + N+   + GI+ ++ ++ +++   D  ++RHL++ +     F +R +  
Sbjct: 193 WCMSKLLDGIQDNYTFAQPGIQMKVKMLEELVSRIDEQVHRHLDQHEVRYLQFAFRWMNN 252

Query: 431 LFRRELSFEQTLCLWEVMWADQAAIRAGIGKSAWSRIRQRAPPTDDLLLYAIAASVLKRR 490
           L  RE+    T+ LW+   ++                           LY  AA +++ R
Sbjct: 253 LLMREVPLRCTIRLWDTYQSE-------------------PDGFSHFHLYVCAAFLVRWR 293

Query: 491 KLIIEKYSSMDEILRECNSMAGQ----LDVWKLLDDAHDLVVTLHD 532
           K I+E+     E+L    ++        D+  LL +A+ L     D
Sbjct: 294 KEILEE-KDFQELLLFLQNLPTAHWDDEDISLLLAEAYRLKFAFAD 338
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A Length = 345 Back     alignment and structure
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A* Length = 396 Back     alignment and structure
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A* Length = 396 Back     alignment and structure
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens} Length = 294 Back     alignment and structure
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens} Length = 334 Back     alignment and structure
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens} Length = 310 Back     alignment and structure
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A Length = 331 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query538
2qfz_A345 TBC1 domain family member 22A; RAB-GAP, GTPase act 100.0
1fkm_A396 Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein 100.0
2qq8_A334 TBC1 domain family member 14; structural genomics 100.0
3qye_A331 TBC1 domain family member 1; rabgap, RAB, myocytes 100.0
3hzj_A310 Rabgap1L, RAB GTPase-activating protein 1-like; st 100.0
4hl4_A292 TBC1 domain family member 20; rabgap, RAB1B, hydro 100.0
3qwl_A294 TBC1 domain family member 7; RAB GTPase activation 100.0
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A Back     alignment and structure
Probab=100.00  E-value=1.4e-50  Score=421.80  Aligned_cols=287  Identities=22%  Similarity=0.381  Sum_probs=240.8

Q ss_pred             CHHHHHhhhccCCCCccchHHHHHHHHhCCCCcchHHHHHHHhhCCCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHhhc
Q 048384           77 SPQQWRSLFTSDGKFRDGGVKFLKKVRSRGVDPSIRVEVWPFLLGVYDLNSTKEEREIIRTQKRKEYEKLRRECRRLLKR  156 (538)
Q Consensus        77 ~~~~W~~~f~~~Gr~~~~~~~~lk~v~~gGi~p~iR~eVW~fLLGvy~~~st~eEr~~i~~~~r~~Y~~l~~~~~~l~~~  156 (538)
                      ..++|.++++..  ..+. .++++.+ ++||++++|+.||++|||++|.+.  ++|..+.++++.+|.+++++|......
T Consensus        25 r~~kw~~~l~~~--~~d~-~~Lr~l~-~~GiP~~~R~~vW~~llg~~p~~~--~~~~~~l~~~~~~Y~~l~~~~~~~~~~   98 (345)
T 2qfz_A           25 RLDKFKQLLAGP--NTDL-EELRRLS-WSGIPKPVRPMTWKLLSGYLPANV--DRRPATLQRKQKEYFAFIEHYYDSRND   98 (345)
T ss_dssp             HHHHHHHHHHCS--BCCH-HHHHHHH-TTCCCGGGHHHHHHHHTTSSCSBG--GGHHHHHHHHHHHHHHHHHHC------
T ss_pred             HHHHHHHHHcCC--CCCH-HHHHHHH-HCCCCHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHHHHHHHHHHhhcCCCc
Confidence            358999999854  3443 4566655 588999999999999999999865  578888899999999999986321000


Q ss_pred             CCCCcccccccccccCCCCCCccccCCCCcchhhhhhhccccccccccCCcCCCCCccccccCCCCCCCCCCCchhhhhc
Q 048384          157 GNGSLKLKEISETGYSGDSGSVLQDTDTSSSEDVVSARESLSSEERSQDAEYSDDPSSILLDGKLSSDSDSSEDPEVIHA  236 (538)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~d~~~~~~~~~~~~  236 (538)
                                                                                                      
T Consensus        99 --------------------------------------------------------------------------------   98 (345)
T 2qfz_A           99 --------------------------------------------------------------------------------   98 (345)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCCCCCCCCCCCCCCCCCCCchhhhhhhhhcchhhhHHHHHHhhhhhhcCCCCccCCCCchhhhHHHHhhhhhhcccC
Q 048384          237 FSCSEDGEENNPDEAPNENIPLTNTEVRDKLRATEDFATWQRIIRLDAVRANSEWITYCPSQATVSEVRARRSAEAVGLK  316 (538)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~I~~Dv~RT~~~~~~f~~~~~~~~~~~a~~~~e~~~l~  316 (538)
                                                        +......++|++||.||+|+ ++|+..                   
T Consensus        99 ----------------------------------~~~~~~~~~I~~Dv~RT~p~-~~F~~~-------------------  124 (345)
T 2qfz_A           99 ----------------------------------EVHQDTYRQIHIDIPRMSPE-ALILQP-------------------  124 (345)
T ss_dssp             ------------------------------------CHHHHHHHHHHGGGCSCH-HHHTSH-------------------
T ss_pred             ----------------------------------cchHHHHHHHHHhCcccCCc-cccCCc-------------------
Confidence                                              00012357899999999999 888742                   


Q ss_pred             CCCCCChhhhhHHHHHHHHHHHHHhhCCCCCcccchhHhHHHHHHHhcc------------------------chHHHHH
Q 048384          317 DYDHLEPCRIFHAARLVAILEAYALYDPEIGYCQGMSDLLSPITAVITE------------------------DHEAFWC  372 (538)
Q Consensus       317 d~~~~~~~~~~~~~~L~~IL~aya~~~pdvGY~QGMndLaa~lL~v~~~------------------------E~~aFw~  372 (538)
                                ..++.|++||.+|+.+||++|||||||+||||||+++..                        |++||||
T Consensus       125 ----------~~~~~L~rIL~~ya~~~p~vgY~QGm~~i~a~ll~v~~~~~~~~~~~~~~~~~~l~~~~~~~~E~daF~~  194 (345)
T 2qfz_A          125 ----------KVTEIFERILFIWAIRHPASGYVQGINDLVTPFFVVFICEYIEAEEVDTVDVSGVPAEVLCNIEADTYWC  194 (345)
T ss_dssp             ----------HHHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHGGGCC-----CCCCTTSCHHHHHHHHHHHHHH
T ss_pred             ----------hHHHHHHHHHHHHHHHCCCCCcccChHHHHHHHHHHHHhhhcccccccccchhhhhhhhhhhHHHHHHHH
Confidence                      134579999999999999999999999999999998742                        7899999


Q ss_pred             HHHHhhhhcccCCCChhHHHHHHHHHHHHHHhhCHHHHHHHHhcCCCcchhhHHHHHHhcCCCCCHHHHHHHHHHHHhhh
Q 048384          373 FVGFMKKARHNFRLDEVGIRRQLSIVSKIIKVKDSHLYRHLEKLQAEDCFFVYRMVVVLFRRELSFEQTLCLWEVMWADQ  452 (538)
Q Consensus       373 f~~lm~~~~~~f~~~~~gl~~~l~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rW~l~lF~relp~~~vlrlWD~~l~~g  452 (538)
                      |+++|++++++|..+++|++..+..+..+|+.++|+||+||++.++.+.+|+++||+++|+++||+++++||||++|++|
T Consensus       195 f~~lm~~~~~~y~~~~~~i~~~~~~l~~ll~~~dP~L~~hL~~~~i~~~~f~~~W~~~lF~~~~p~~~~lrlWD~~l~~g  274 (345)
T 2qfz_A          195 MSKLLDGIQDNYTFAQPGIQMKVKMLEELVSRIDEQVHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTIRLWDTYQSEP  274 (345)
T ss_dssp             HHHHHHTSGGGSSTTCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCHHHHHHHHHHTTTTTTSCHHHHHHHHHHHTTST
T ss_pred             HHHHHHccccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHcccCCHHHHHHHHHHHHhCC
Confidence            99999999999998899999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             hhhhhccccchhhhhccCCCCCchHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhcccCC----CCHHHHHHHHHHHHH
Q 048384          453 AAIRAGIGKSAWSRIRQRAPPTDDLLLYAIAASVLKRRKLIIEKYSSMDEILRECNSMAGQ----LDVWKLLDDAHDLVV  528 (538)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~~~~~~~~~lf~iaa~ll~~r~~iL~~~~d~deil~~ln~l~~~----idv~~lL~~A~~L~~  528 (538)
                      ..+                   ..+++|+++|+|+..++.||. +.++++++++|++++..    .|++.++..|..|..
T Consensus       275 ~~~-------------------~~~~~~v~~AiL~~~~~~ll~-~~d~~~il~~L~~~p~~~~~~~di~~ll~~A~~l~~  334 (345)
T 2qfz_A          275 DGF-------------------SHFHLYVCAAFLVRWRKEILE-EKDFQELLLFLQNLPTAHWDDEDISLLLAEAYRLKF  334 (345)
T ss_dssp             TTT-------------------TTHHHHHHHHHHHHTHHHHHH-CCCHHHHHHHHTSCSCTTCCHHHHHHHHHHHHHHHH
T ss_pred             CCh-------------------hHHHHHHHHHHHHHHHHHHHh-hCCHHHHHHHHHcCCCcCCchhHHHHHHHHHHHHHH
Confidence            521                   236788888888888988886 47999999999999865    379999999999988


Q ss_pred             HHHHh
Q 048384          529 TLHDK  533 (538)
Q Consensus       529 ~~~~~  533 (538)
                      +++..
T Consensus       335 ~~~~~  339 (345)
T 2qfz_A          335 AFADA  339 (345)
T ss_dssp             HC---
T ss_pred             HHHhh
Confidence            87654
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A* Back     alignment and structure
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens} Back     alignment and structure
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A Back     alignment and structure
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens} Back     alignment and structure
>4hl4_A TBC1 domain family member 20; rabgap, RAB1B, hydrolase activator, catalytic domain, F GTPase-activating proteins, RAB GTP-binding protein, GTP HY; 2.20A {Homo sapiens} PDB: 4hlq_A* Back     alignment and structure
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 538
d1fkma2188 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p { 4e-14
d1fkma1194 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p { 2e-09
d1fkma1194 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p { 0.002
>d1fkma2 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 188 Back     information, alignment and structure

class: All alpha proteins
fold: Left-handed superhelix
superfamily: Ypt/Rab-GAP domain of gyp1p
family: Ypt/Rab-GAP domain of gyp1p
domain: Ypt/Rab-GAP domain of gyp1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 68.7 bits (167), Expect = 4e-14
 Identities = 17/62 (27%), Positives = 31/62 (50%)

Query: 390 GIRRQLSIVSKIIKVKDSHLYRHLEKLQAEDCFFVYRMVVVLFRRELSFEQTLCLWEVMW 449
           GI RQ+  +S+++K  D+ LY H +    E   F +R +  L  RE      + +W+   
Sbjct: 4   GILRQVKNLSQLVKRIDADLYNHFQNEHVEFIQFAFRWMNCLLMREFQMGTVIRMWDTYL 63

Query: 450 AD 451
           ++
Sbjct: 64  SE 65
>d1fkma1 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194 Back     information, alignment and structure
>d1fkma1 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query538
d1fkma1194 Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccha 99.97
d1fkma2188 Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccha 99.81
>d1fkma1 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: Left-handed superhelix
superfamily: Ypt/Rab-GAP domain of gyp1p
family: Ypt/Rab-GAP domain of gyp1p
domain: Ypt/Rab-GAP domain of gyp1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=4.9e-31  Score=250.77  Aligned_cols=158  Identities=22%  Similarity=0.396  Sum_probs=123.7

Q ss_pred             HHHHhhhccCCCCccchHHHHHHHHhCCCCcchHHHHHHHhhCCCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHhhcCC
Q 048384           79 QQWRSLFTSDGKFRDGGVKFLKKVRSRGVDPSIRVEVWPFLLGVYDLNSTKEEREIIRTQKRKEYEKLRRECRRLLKRGN  158 (538)
Q Consensus        79 ~~W~~~f~~~Gr~~~~~~~~lk~v~~gGi~p~iR~eVW~fLLGvy~~~st~eEr~~i~~~~r~~Y~~l~~~~~~l~~~~~  158 (538)
                      .+|..+++. ..+.+. .++++ +.++|||+++|+.||++|||+||.+++  +++....+++++|..+......      
T Consensus         8 ~~~~~~l~~-~~~i~~-~~lr~-l~~~Gip~~lR~~vW~~llg~~~~~~~--~~~~~~~~~~~~y~~~~~~~~~------   76 (194)
T d1fkma1           8 SKFDNILKD-KTIINQ-QDLRQ-ISWNGIPKIHRPVVWKLLIGYLPVNTK--RQEGFLQRKRKEYRDSLKHTFS------   76 (194)
T ss_dssp             HHHHHHHSS-CSBCCH-HHHHH-HHTTCCCGGGHHHHHHHHTTCSCSBGG--GHHHHHHHHHHHHHHHHHHTSS------
T ss_pred             HHHHHHhcc-cCCCCH-HHHHH-HHHcCCChHHHHHHHHHHHhhcCCchh--hHHHHHHHHhhhhhhhhhhhhh------
Confidence            578888864 445543 46665 456899999999999999999999986  5566778888888876655210      


Q ss_pred             CCcccccccccccCCCCCCccccCCCCcchhhhhhhccccccccccCCcCCCCCccccccCCCCCCCCCCCchhhhhccc
Q 048384          159 GSLKLKEISETGYSGDSGSVLQDTDTSSSEDVVSARESLSSEERSQDAEYSDDPSSILLDGKLSSDSDSSEDPEVIHAFS  238 (538)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~d~~~~~~~~~~~~~~  238 (538)
                      ..                                                                              
T Consensus        77 ~~------------------------------------------------------------------------------   78 (194)
T d1fkma1          77 DQ------------------------------------------------------------------------------   78 (194)
T ss_dssp             SS------------------------------------------------------------------------------
T ss_pred             cc------------------------------------------------------------------------------
Confidence            00                                                                              


Q ss_pred             CCCCCCCCCCCCCCCCCCCCchhhhhhhhhcchhhhHHHHHHhhhhhhcCCCCccCCCCchhhhHHHHhhhhhhcccCCC
Q 048384          239 CSEDGEENNPDEAPNENIPLTNTEVRDKLRATEDFATWQRIIRLDAVRANSEWITYCPSQATVSEVRARRSAEAVGLKDY  318 (538)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~I~~Dv~RT~~~~~~f~~~~~~~~~~~a~~~~e~~~l~d~  318 (538)
                                                     ........++|++||.||+|++++|..+                     
T Consensus        79 -------------------------------~~~~~~~~~~I~~Dv~RT~~~~~~f~~~---------------------  106 (194)
T d1fkma1          79 -------------------------------HSRDIPTWHQIEIDIPRTNPHIPLYQFK---------------------  106 (194)
T ss_dssp             -------------------------------CSTHHHHHHHHHHHGGGSSTTSGGGGSH---------------------
T ss_pred             -------------------------------cccchHHHHHHHHHHHhcCCcccccccc---------------------
Confidence                                           0001234678999999999999999643                     


Q ss_pred             CCCChhhhhHHHHHHHHHHHHHhhCCCCCcccchhHhHHHHHHHhcc----------------------------chHHH
Q 048384          319 DHLEPCRIFHAARLVAILEAYALYDPEIGYCQGMSDLLSPITAVITE----------------------------DHEAF  370 (538)
Q Consensus       319 ~~~~~~~~~~~~~L~~IL~aya~~~pdvGY~QGMndLaa~lL~v~~~----------------------------E~~aF  370 (538)
                              .+++.|++||.+||.+||++|||||||+||||||+++..                            |++||
T Consensus       107 --------~~~~~L~rIL~~ya~~np~~gY~QGmn~i~a~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ead~F  178 (194)
T d1fkma1         107 --------SVQNSLQRILYLWAIRHPASGYVQGINDLVTPFFETFLTEYLPPSQIDDVEIKDPSTYMVDEQITDLEADTF  178 (194)
T ss_dssp             --------HHHHHHHHHHHHHHHHCTTTCSCTTHHHHHHHHHHHHHGGGSCGGGGGGTTTSCGGGTCCHHHHHHHHHHHH
T ss_pred             --------hhHHHHHHHHHHHHHHCCCCCeeecchHHHHHHHHHHhhhhhhhhhhhhhhhcchhhhhhhhhhhhHHHHHH
Confidence                    245689999999999999999999999999999998632                            67999


Q ss_pred             HHHHHHhhhhcccCC
Q 048384          371 WCFVGFMKKARHNFR  385 (538)
Q Consensus       371 w~f~~lm~~~~~~f~  385 (538)
                      |||+.+|+++.++|.
T Consensus       179 ~~f~~lm~~i~d~y~  193 (194)
T d1fkma1         179 WCLTKLLEQITDNYI  193 (194)
T ss_dssp             HHHHHHHGGGGGGSS
T ss_pred             HHHHHHHHhhhccCC
Confidence            999999999988774
>d1fkma2 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure