Citrus Sinensis ID: 048392

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-----
SDDAHKFVQCLLENSEDSTSISKLIYTRTNSSFSSILDFSIQNLRFSTPTTPKPQVIVTPVKESHVQAAVKCSQKYGLQVRVRSGGHDYEGLSYVSNYHVPFVIIDFINLSSVSVDPEAKTAWVQAGATNGKVYHTIAEKSKTLAFPAGVCPTVGVGGLFSGGGYGFLMRKYGLAADNVVDAHLIDVNGRLLDRKSMGEDLFWAIRGGGGASFGVIIAWKIKLVTVPEIVTAFTVNRTLEQNATKIVDRWQHVADNLDEDLYIRVFLRSANSSTQGKKTIRASFESLFLGGADVLLPLMQHSFPELGLVKEDCIEMSWIESIMYFAGFRGQSLDVLLNRTQPNVRFFKAKSDFVYDPMPEIAFQGIYERFYEKEAEAAEMILSPYGGVMNQISDSATPFPHRAGTRYKIQHIVYWEEEGSEASQRHISWIRRLYDYVAPYVSKNPRAAYLNYRDLDIGTNNKGYTSYKQASIWGLKYFKNNFKRLVDVKTMVDPGNFFRNEQSIPPLSSRKKKGD
cccccHHHHHHccccccccccccEEEcccccccHHHHHHHHHcccccccccccccEEEEEccHHHHHHHHHHHHHcccEEEEEccccccccccccccccccEEEEEccccccEEEcccccEEEEcccccHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHccccEEEEEEEEEEEcccEEEccccccccEEEEEccccccEEEEEEEEEEEEEcccEEEEEEEcccHHHHHHHHHHHHHHHHHccccccEEEEEEEEccccccccEEEEEEEEEEccccHHHHHHHHHHccccccccccccccccHHHHHHHHHccccccHHHHccccccccccEEEEEccccccccHHHHHHHHHHHHHcccccEEEEEEcccccccccccccccccccccccEEEEEEEEEccccHHHHHHHHHHHHHHHHHHccccccccccEEEccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccc
cccHHHHHHHHHHccccccccccEEEccccccHHHHHHHHHHccccccccccccEEEEEcccHHHHHEHEHHHHHcccEEEEEcccccccccEEEEcccccEEEEEcHHcccEEEEcccccEEEEccccHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHccccccEEEEEEEEccccEEcHHHHcccHHEEEEccccccEEEEEEEEEEEEccccEEEEEEEcccHHccHHHHHHHHHHHHHcccccEEEEEEEEEccccccccEEEEEEEEEEEcccHHHHHHHHHHHccHccccHccHHHHHHHHHEHHHcccccccHHHHHccccccHHHHccccccccccccHHHHHHHHHHHHHcccccEEEEEcccccccccccccccccccccccEEEEEEEEEEccccHHHHHHHHHHHHHHHHHcccccccccccEEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHEEEEEccccccccccccccccccccccccc
SDDAHKFVQCLlensedstsISKLIYtrtnssfssildfsiqnlrfstpttpkpqvivtpvkeSHVQAAVKCSQkyglqvrvrsgghdyeglsyvsnyHVPFVIIDFInlssvsvdpeaKTAWVQAGATNGKVYHTIAEKsktlafpagvcptvgvgglfsgggyGFLMRKYGLAADNVVDAHLIDVNGRLLDRKSMGEDLFWAirggggasFGVIIAWKIKLVTVPEIVTAFTVNRTLEQNATKIVDRWQHVADNLDEDLYIRVFLRsansstqgKKTIRASFESLFLggadvllplmqhsfpelglvkedcieMSWIESIMYFAGFRGQSLDVLLnrtqpnvrffkaksdfvydpmpeiaFQGIYERFYEKEAEAAEMILspyggvmnqisdsatpfphragtrykIQHIVYWEEEGSEASQRHISWIRRLYDYvapyvsknpraaylnyrdldigtnnkgytsykQASIWGLKYFKNNFKRLVDVktmvdpgnffrneqsipplssrkkkgd
SDDAHKFVQCLlensedstsISKLIYTRTNSSFSSILDFSIQNLRFSTPTTPKPQVIVTPVKESHVQAAVkcsqkyglqvRVRSGGHDYEGLSYVSNYHVPFVIIDFINLSSVSVDPEAKTAWVQAGATNGKVYHTIAEKSKTLAFPAGVCPTVGVGGLFSGGGYGFLMRKYGLAADNVVDAHLIDVNGRLLDRKSMGEDLFWAIRGGGGASFGVIIAWKIKLVTVPEIVTAFTVNRTLEQNATKIVDRWQHVADNLDEDLYIRVFLrsansstqgkkTIRASFESLFLGGADVLLPLMQHSFPELGLVKEDCIEMSWIESIMYFAGFRGQSLDVLLNRTQPNVRFfkaksdfvydpMPEIAFQGIYERFYEKEAEAAEMILSPYGGVMNQISDSATPFPHRAGTRYKIQHIVYWEEEGSEASQRHISWIRRLYDYVAPYVSKNPRAAYLNYRDLDIGTNNKGYTSYKQASIWGLKYFKNNFKRLVDVKTMvdpgnffrneqsipplssrkkkgd
SDDAHKFVQCLLENSEDSTSISKLIYTRTNSSFSSILDFSIQNLRFSTPTTPKPQVIVTPVKESHVQAAVKCSQKYGLQVRVRSGGHDYEGLSYVSNYHVPFVIIDFINLSSVSVDPEAKTAWVQAGATNGKVYHTIAEKSKTLAFPAGVCPTvgvgglfsgggygflMRKYGLAADNVVDAHLIDVNGRLLDRKSMGEDLFWAIRGGGGASFGVIIAWKIKLVTVPEIVTAFTVNRTLEQNATKIVDRWQHVADNLDEDLYIRVFLRSANSSTQGKKTIRASFESLFLGGADVLLPLMQHSFPELGLVKEDCIEMSWIESIMYFAGFRGQSLDVLLNRTQPNVRFFKAKSDFVYDPMPEIAFQGIYERFYEKEAEAAEMILSPYGGVMNQISDSATPFPHRAGTRYKIQHIVYWEEEGSEASQRHISWIRRLYDYVAPYVSKNPRAAYLNYRDLDIGTNNKGYTSYKQASIWGLKYFKNNFKRLVDVKTMVDPGNFFRNEQSIPPLSSRKKKGD
******FVQCLL********ISKLIYTRTNSSFSSILDFSIQNLRFSTPTTPKPQVIVTPVKESHVQAAVKCSQKYGLQVRVRSGGHDYEGLSYVSNYHVPFVIIDFINLSSVSVDPEAKTAWVQAGATNGKVYHTIAEKSKTLAFPAGVCPTVGVGGLFSGGGYGFLMRKYGLAADNVVDAHLIDVNGRLLDRKSMGEDLFWAIRGGGGASFGVIIAWKIKLVTVPEIVTAFTVNRTLEQNATKIVDRWQHVADNLDEDLYIRVFLRSAN*****KKTIRASFESLFLGGADVLLPLMQHSFPELGLVKEDCIEMSWIESIMYFAGFRGQSLDVLLNRTQPNVRFFKAKSDFVYDPMPEIAFQGIYERFYEKEAEAAEMILSPYGGVMNQISDSATPFPHRAGTRYKIQHIVYWEEEGSEASQRHISWIRRLYDYVAPYVSKNPRAAYLNYRDLDIGTNNKGYTSYKQASIWGLKYFKNNFKRLVDVKTMVDPGNFF*****************
**DAHKFVQCLLENSEDSTSISKLIYTRTNSSFSSILDFSIQNLRFSTPTTPKPQVIVTPVKESHVQAAVKCSQKYGLQVRVRSGGHDYEGLSYVSNYHVPFVIIDFINLSSVSVDPEAKTAWVQAGATNGKVYHTIAEKSKTLAFPAGVCPTVGVGGLFSGGGYGFLMRKYGLAADNVVDAHLIDVNGRLLDRKSMGEDLFWAIRGGGGASFGVIIAWKIKLVTVPEIVTAFTVNRTLEQNATKIVDRWQHVADNLDEDLYIRVFLRSANSSTQGKKTIRASFESLFLGGADVLLPLMQHSFPELGLVKEDCIEMSWIESIMYFAGFRGQSLDVLLNRTQPNVRFFKAKSDFVYDPMPEIAFQGIYERFYEKEAEAAEMILSPYGGVMNQISDSATPFPHRAGTRYKIQHIVYWEEEGSEASQRHISWIRRLYDYVAPYVSKNPRAAYLNYRDLDIGTNNKGYTSYKQASIWGLKYFKNNFKRLVDVKTMVDPGNFFRNEQ*************
SDDAHKFVQCLLENSEDSTSISKLIYTRTNSSFSSILDFSIQNLRFSTPTTPKPQVIVTPVKESHVQAAVKCSQKYGLQVRVRSGGHDYEGLSYVSNYHVPFVIIDFINLSSVSVDPEAKTAWVQAGATNGKVYHTIAEKSKTLAFPAGVCPTVGVGGLFSGGGYGFLMRKYGLAADNVVDAHLIDVNGRLLDRKSMGEDLFWAIRGGGGASFGVIIAWKIKLVTVPEIVTAFTVNRTLEQNATKIVDRWQHVADNLDEDLYIRVFLRSANSSTQGKKTIRASFESLFLGGADVLLPLMQHSFPELGLVKEDCIEMSWIESIMYFAGFRGQSLDVLLNRTQPNVRFFKAKSDFVYDPMPEIAFQGIYERFYEKEAEAAEMILSPYGGVMNQISDSATPFPHRAGTRYKIQHIVYWEEEGSEASQRHISWIRRLYDYVAPYVSKNPRAAYLNYRDLDIGTNNKGYTSYKQASIWGLKYFKNNFKRLVDVKTMVDPGNFFRNEQSI***********
****HKFVQCLLENSEDSTSISKLIYTRTNSSFSSILDFSIQNLRFSTPTTPKPQVIVTPVKESHVQAAVKCSQKYGLQVRVRSGGHDYEGLSYVSNYHVPFVIIDFINLSSVSVDPEAKTAWVQAGATNGKVYHTIAEKSKTLAFPAGVCPTVGVGGLFSGGGYGFLMRKYGLAADNVVDAHLIDVNGRLLDRKSMGEDLFWAIRGGGGASFGVIIAWKIKLVTVPEIVTAFTVNRTLEQNATKIVDRWQHVADNLDEDLYIRVFLRSANSSTQGKKTIRASFESLFLGGADVLLPLMQHSFPELGLVKEDCIEMSWIESIMYFAGFRGQSLDVLLNRTQPNVRFFKAKSDFVYDPMPEIAFQGIYERFYEKEAEAAEMILSPYGGVMNQISDSATPFPHRAGTRYKIQHIVYWEEEGSEASQRHISWIRRLYDYVAPYVSKNPRAAYLNYRDLDIGTNNKGYTSYKQASIWGLKYFKNNFKRLVDVKTMVDPGNFFRNEQSIPP*********
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SDDAHKFVQCLLENSEDSTSISKLIYTRTNSSFSSILDFSIQNLRFSTPTTPKPQVIVTPVKESHVQAAVKCSQKYGLQVRVRSGGHDYEGLSYVSNYHVPFVIIDFINLSSVSVDPEAKTAWVQAGATNGKVYHTIAEKSKTLAFPAGVCPTVGVGGLFSGGGYGFLMRKYGLAADNVVDAHLIDVNGRLLDRKSMGEDLFWAIRGGGGASFGVIIAWKIKLVTVPEIVTAFTVNRTLEQNATKIVDRWQHVADNLDEDLYIRVFLRSANSSTQGKKTIRASFESLFLGGADVLLPLMQHSFPELGLVKEDCIEMSWIESIMYFAGFRGQSLDVLLNRTQPNVRFFKAKSDFVYDPMPEIAFQGIYERFYEKEAEAAEMILSPYGGVMNQISDSATPFPHRAGTRYKIQHIVYWEEEGSEASQRHISWIRRLYDYVAPYVSKNPRAAYLNYRDLDIGTNNKGYTSYKQASIWGLKYFKNNFKRLVDVKTMVDPGNFFRNEQSIPPLSSRKKKGD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query515 2.2.26 [Sep-21-2011]
A6P6W0545 Cannabidiolic acid syntha N/A no 0.982 0.928 0.513 1e-149
A6P6V9544 Cannabidiolic acid syntha N/A no 0.970 0.919 0.516 1e-149
A6P6W1545 Cannabidiolic acid syntha N/A no 0.982 0.928 0.511 1e-149
Q8GTB6545 Tetrahydrocannabinolic ac N/A no 0.965 0.911 0.520 1e-148
Q33DQ2545 Inactive tetrahydrocannab N/A no 0.976 0.922 0.512 1e-147
Q9SVG4570 Reticuline oxidase-like p no no 0.970 0.877 0.463 1e-121
P30986538 Reticuline oxidase OS=Esc N/A no 0.910 0.871 0.438 1e-105
P93479535 Reticuline oxidase OS=Pap N/A no 0.910 0.876 0.440 1e-102
Q796Y5451 Uncharacterized FAD-linke yes no 0.784 0.895 0.269 2e-22
O06997447 Uncharacterized FAD-linke no no 0.788 0.908 0.284 7e-22
>sp|A6P6W0|CASL1_CANSA Cannabidiolic acid synthase-like 1 OS=Cannabis sativa GN=CBDAS2 PE=2 SV=1 Back     alignment and function desciption
 Score =  529 bits (1362), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 267/520 (51%), Positives = 369/520 (70%), Gaps = 14/520 (2%)

Query: 1   SDDAHKFVQCLLENSEDSTSISKLIYTRTNSSFSSILDFSIQNLRFSTPTTPKPQVIVTP 60
           ++    F++C  +    + + +KL+YT+ +  + SIL+ +IQNLRF++ TTPKP VI+TP
Sbjct: 28  ANPQENFLKCFSQYIPTNVTNAKLVYTQHDQFYMSILNSTIQNLRFTSDTTPKPLVIITP 87

Query: 61  VKESHVQAAVKCSQKYGLQVRVRSGGHDYEGLSYVSNYHVPFVIIDFINLSSVSVDPEAK 120
           +  SH+Q  + CS+K GLQ+R RSGGHD EG+SY+S   VPFVI+D  N+ SV +D  ++
Sbjct: 88  LNVSHIQGTILCSKKVGLQIRTRSGGHDAEGMSYIS--QVPFVIVDLRNMHSVKIDVHSQ 145

Query: 121 TAWVQAGATNGKVYHTIAEKSKTLAFPAGVCPTVGVGGLFSGGGYGFLMRKYGLAADNVV 180
           TAWV+AGAT G+VY+ I E ++ L+FPAG CPTVG GG FSGGGYG LMR YGLAADN++
Sbjct: 146 TAWVEAGATLGEVYYWINENNENLSFPAGYCPTVGAGGHFSGGGYGALMRNYGLAADNII 205

Query: 181 DAHLIDVNGRLLDRKSMGEDLFWAIRGGGGASFGVIIAWKIKLVTVPEIVTAFTVNRTLE 240
           DAHL++V+G++LDRKSMGEDLFWAIRGGGG +FG+I AWKI+LV VP + T F+V + +E
Sbjct: 206 DAHLVNVDGKVLDRKSMGEDLFWAIRGGGGENFGIIAAWKIRLVAVPSMSTIFSVKKNME 265

Query: 241 -QNATKIVDRWQHVADNLDEDLYIRVFLRSAN-SSTQGKK--TIRASFESLFLGGADVLL 296
                K+V++WQ++A   +++L +     + N +  QGK   TI + F S+F GG D L+
Sbjct: 266 IHELVKLVNKWQNIAYMYEKELLLFTHFITRNITDNQGKNKTTIHSYFSSIFHGGVDSLV 325

Query: 297 PLMQHSFPELGLVKEDCIEMSWIESIMYFAGFRGQSL-----DVLLNRTQPNVRFFKAKS 351
            LM  SFPELG+ K DC ++SWI++I++++G    +      ++LL+R+      F  K 
Sbjct: 326 DLMNKSFPELGIKKTDCKQLSWIDTIIFYSGVVNYNTTYFKKEILLDRSGGRKAAFSIKL 385

Query: 352 DFVYDPMPEIAFQGIYERFYEKEAEAAEMILSPYGGVMNQISDSATPFPHRAGTRYKIQH 411
           D+V  P+PE A   I E+ YE++      +  PYGG+M++IS+SA PFPHRAG  Y+I +
Sbjct: 386 DYVKKPIPETAMVTILEKLYEEDVGVGMFVFYPYGGIMDEISESAIPFPHRAGIMYEIWY 445

Query: 412 IVYWEEEGSEASQRHISWIRRLYDYVAPYVSKNPRAAYLNYRDLDIG-TNNKGYTSYKQA 470
           I  WE++  E +++HI+WIR +Y++  PYVS+NPR AYLNYRDLD+G TN +   +Y QA
Sbjct: 446 IASWEKQ--EDNEKHINWIRNVYNFTTPYVSQNPRMAYLNYRDLDLGKTNFESPNNYTQA 503

Query: 471 SIWGLKYFKNNFKRLVDVKTMVDPGNFFRNEQSIPPLSSR 510
            IWG KYF  NF RLV VKT VDP NFFRNEQSIPPL  R
Sbjct: 504 RIWGEKYFGKNFNRLVKVKTKVDPDNFFRNEQSIPPLPLR 543
Has no cannabidiolic acid synthase activity.
Cannabis sativa (taxid: 3483)
>sp|A6P6V9|CBDAS_CANSA Cannabidiolic acid synthase OS=Cannabis sativa GN=CBDAS PE=1 SV=1 Back     alignment and function description
>sp|A6P6W1|CASL2_CANSA Cannabidiolic acid synthase-like 2 OS=Cannabis sativa GN=CBDAS3 PE=2 SV=1 Back     alignment and function description
>sp|Q8GTB6|THCAS_CANSA Tetrahydrocannabinolic acid synthase OS=Cannabis sativa PE=1 SV=1 Back     alignment and function description
>sp|Q33DQ2|THCAI_CANSA Inactive tetrahydrocannabinolic acid synthase OS=Cannabis sativa PE=3 SV=1 Back     alignment and function description
>sp|Q9SVG4|RETOL_ARATH Reticuline oxidase-like protein OS=Arabidopsis thaliana GN=At4g20830 PE=1 SV=2 Back     alignment and function description
>sp|P30986|RETO_ESCCA Reticuline oxidase OS=Eschscholzia californica GN=BBE1 PE=1 SV=1 Back     alignment and function description
>sp|P93479|RETO_PAPSO Reticuline oxidase OS=Papaver somniferum GN=BBE1 PE=3 SV=1 Back     alignment and function description
>sp|Q796Y5|YGAK_BACSU Uncharacterized FAD-linked oxidoreductase YgaK OS=Bacillus subtilis (strain 168) GN=ygaK PE=3 SV=4 Back     alignment and function description
>sp|O06997|YVDP_BACSU Uncharacterized FAD-linked oxidoreductase YvdP OS=Bacillus subtilis (strain 168) GN=yvdP PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query515
224115242527 predicted protein [Populus trichocarpa] 0.968 0.946 0.698 0.0
359483744538 PREDICTED: LOW QUALITY PROTEIN: reticuli 0.978 0.936 0.695 0.0
224110866533 predicted protein [Populus trichocarpa] 0.970 0.938 0.679 0.0
224108834533 predicted protein [Populus trichocarpa] 0.970 0.938 0.679 0.0
225446670537 PREDICTED: reticuline oxidase-like prote 0.976 0.936 0.643 0.0
224122386533 predicted protein [Populus trichocarpa] 0.970 0.938 0.673 0.0
224108830533 predicted protein [Populus trichocarpa] 0.970 0.938 0.679 0.0
224056785526 predicted protein [Populus trichocarpa] 0.980 0.960 0.649 0.0
224122378535 predicted protein [Populus trichocarpa] 0.972 0.936 0.665 0.0
224056781533 predicted protein [Populus trichocarpa] 0.980 0.947 0.645 0.0
>gi|224115242|ref|XP_002332196.1| predicted protein [Populus trichocarpa] gi|222875303|gb|EEF12434.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  711 bits (1835), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/507 (69%), Positives = 420/507 (82%), Gaps = 8/507 (1%)

Query: 7   FVQCLLENSEDSTSISKLIYTRTNSSFSSILDFSIQNLRFSTPTTPKPQVIVTPVKESHV 66
           F+QCL  +S++S SISKLIYT  NSS+SSIL FSIQNLRF+T +TPKP VIVTP   SH+
Sbjct: 24  FLQCL--DSQNSHSISKLIYTPINSSYSSILQFSIQNLRFNTSSTPKPLVIVTPTNISHI 81

Query: 67  QAAVKCSQKYGLQVRVRSGGHDYEGLSYVSNYHVPFVIIDFINLSSVSVDPEAKTAWVQA 126
           QAA+ CSQK+G+Q+R+RSGGHDYEGLSYVS +   FV+ID INL +++V+ E KTAWVQ+
Sbjct: 82  QAAIICSQKHGMQIRIRSGGHDYEGLSYVSTFS--FVVIDLINLRTINVNAENKTAWVQS 139

Query: 127 GATNGKVYHTIAEKSKTLAFPAGVCPTVGVGGLFSGGGYGFLMRKYGLAADNVVDAHLID 186
           G T G+VY+ IAEKS+TLAFPA VCPTVGVGG FSGGGYG LMRKYGLAAD+++DA L+D
Sbjct: 140 GVTIGEVYYRIAEKSRTLAFPASVCPTVGVGGHFSGGGYGMLMRKYGLAADHIIDAQLVD 199

Query: 187 VNGRLLDRKSMGEDLFWAIRGGGGASFGVIIAWKIKLVTVPEIVTAFTVNRTLEQNATKI 246
           V GR+LDR+SMGEDLFWAIRGGGG +FGV+IAWKI LV+ P  VT F V RTLEQNA+K+
Sbjct: 200 VKGRILDRESMGEDLFWAIRGGGGNTFGVVIAWKISLVSAPPTVTVFNVQRTLEQNASKL 259

Query: 247 VDRWQHVADNLDEDLYIRVFLRSANSSTQGKK--TIRASFESLFLGGADVLLPLMQHSFP 304
           V RWQ VAD L EDL+IR+ L   NS+ +GK   TI+ASF SLFLGG D LLPL+Q SFP
Sbjct: 260 VHRWQFVADKLHEDLFIRIILNRVNSTEEGKSNTTIQASFNSLFLGGIDRLLPLIQDSFP 319

Query: 305 ELGLVKEDCIEMSWIESIMYFAGF-RGQSLDVLLNRTQPNVRFFKAKSDFVYDPMPEIAF 363
           ELGLVKEDCIEMSWI+S++YF GF    SLDVLL+RT    R FKAKSD+V +P+PE+  
Sbjct: 320 ELGLVKEDCIEMSWIQSVLYFDGFPSNSSLDVLLDRTPSTRRNFKAKSDYVKEPIPELGL 379

Query: 364 QGIYERFYEKEAEAAEMILSPYGGVMNQISDSATPFPHRAGTRYKIQHIVYWEEEGSEAS 423
           +GI+ERF++K+     +I SPYGG M++IS+S+ PFPHRAG  YKIQH++YW+EEG  A+
Sbjct: 380 EGIWERFFDKDINTPILIFSPYGGKMSEISESSIPFPHRAGNIYKIQHLIYWDEEGIVAT 439

Query: 424 QRHISWIRRLYDYVAPYVSKNPRAAYLNYRDLDIGTNNK-GYTSYKQASIWGLKYFKNNF 482
           +RHISWIRRLY Y+APYVSK PRAAY+NYRDLDIG NN  G TSY+QASIWGLKYFKNNF
Sbjct: 440 KRHISWIRRLYSYLAPYVSKTPRAAYVNYRDLDIGINNHAGNTSYRQASIWGLKYFKNNF 499

Query: 483 KRLVDVKTMVDPGNFFRNEQSIPPLSS 509
            RLV VKT VDP NFFRNEQSIPPLSS
Sbjct: 500 DRLVRVKTAVDPANFFRNEQSIPPLSS 526

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359483744|ref|XP_003633009.1| PREDICTED: LOW QUALITY PROTEIN: reticuline oxidase-like protein-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|224110866|ref|XP_002333020.1| predicted protein [Populus trichocarpa] gi|222834634|gb|EEE73097.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224108834|ref|XP_002333339.1| predicted protein [Populus trichocarpa] gi|222836259|gb|EEE74680.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225446670|ref|XP_002277310.1| PREDICTED: reticuline oxidase-like protein-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|224122386|ref|XP_002330610.1| predicted protein [Populus trichocarpa] gi|222872168|gb|EEF09299.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224108830|ref|XP_002333338.1| predicted protein [Populus trichocarpa] gi|222836258|gb|EEE74679.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224056785|ref|XP_002299022.1| predicted protein [Populus trichocarpa] gi|224056787|ref|XP_002299023.1| predicted protein [Populus trichocarpa] gi|222846280|gb|EEE83827.1| predicted protein [Populus trichocarpa] gi|222846281|gb|EEE83828.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224122378|ref|XP_002330608.1| predicted protein [Populus trichocarpa] gi|222872166|gb|EEF09297.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224056781|ref|XP_002299020.1| predicted protein [Populus trichocarpa] gi|222846278|gb|EEE83825.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query515
TAIR|locus:2121534532 AT4G20820 [Arabidopsis thalian 0.951 0.921 0.502 1.1e-137
TAIR|locus:2204579534 AT1G30760 [Arabidopsis thalian 0.955 0.921 0.510 3.6e-137
TAIR|locus:2044692532 MEE23 "MATERNAL EFFECT EMBRYO 0.955 0.924 0.510 4.6e-137
TAIR|locus:2158740537 AT5G44400 [Arabidopsis thalian 0.965 0.925 0.507 2.5e-136
TAIR|locus:2163441533 AT5G44440 [Arabidopsis thalian 0.955 0.923 0.494 1.1e-135
TAIR|locus:2204604527 AT1G30700 [Arabidopsis thalian 0.974 0.952 0.492 6e-135
TAIR|locus:2158720541 AT5G44380 [Arabidopsis thalian 0.965 0.918 0.488 1e-132
TAIR|locus:2158730542 AT5G44390 [Arabidopsis thalian 0.963 0.915 0.493 8.1e-131
TAIR|locus:2158700532 AT5G44360 [Arabidopsis thalian 0.966 0.936 0.493 5.7e-130
TAIR|locus:2163411535 AT5G44410 [Arabidopsis thalian 0.937 0.902 0.479 1.9e-129
TAIR|locus:2121534 AT4G20820 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1348 (479.6 bits), Expect = 1.1e-137, P = 1.1e-137
 Identities = 253/503 (50%), Positives = 356/503 (70%)

Query:     7 FVQCLLENSEDSTSISKLIYTRTNSSFSSILDFSIQNLRFSTPTTPKPQVIVTPVKESHV 66
             F+QCL     DS  +SK+I+T  ++SFSS+L  SIQN RFS P  PKP +I+TPV+ S V
Sbjct:    37 FLQCLSLQLNDSNIVSKVIHTPNDTSFSSVLASSIQNQRFSAPDVPKPVLILTPVQPSDV 96

Query:    67 QAAVKCSQKYGLQVRVRSGGHDYEGLSYVSNYHVPFVIIDFINLSSVSVDPEAKTAWVQA 126
             Q+AVKC++++G+ +R RSGGHDYEGLSYV+  H PFVI+D  NL S++VD + ++ WVQ 
Sbjct:    97 QSAVKCARRFGIHIRTRSGGHDYEGLSYVT--HKPFVILDLRNLRSITVDVDNRSVWVQT 154

Query:   127 GATNGKVYHTIAEKSKTLAFPAGVCPTXXXXXXXXXXXXXXXMRKYGLAADNVVDAHLID 186
             GAT G++Y+ I +K++TLAFPAGVCPT               +RK+GLAAD+V+DA ++D
Sbjct:   155 GATIGELYYEIGKKNRTLAFPAGVCPTVGVGGHFSGGGYGTLLRKHGLAADHVIDARVVD 214

Query:   187 VNGRLLDRKSMGEDLFWAIRGGGGASFGVIIAWKIKLVTVPEIVTAFTVNRTLEQNATKI 246
               GR+L+R+ MGED FWAIRGGGG+SF V+++WKI L+ VP  VT F V +  EQ+A KI
Sbjct:   215 ARGRILERREMGEDFFWAIRGGGGSSFCVVLSWKIGLINVPSTVTVFNVTKFSEQSALKI 274

Query:   247 VDRWQHVADNLDEDLYIRVFLRSANSSTQGKKTIRASFESLFLGGADVLLPLMQHSFPEL 306
             + RWQ VAD + +DL+IRV L+      + K  +RASF  L+LG    LL ++   FPEL
Sbjct:   275 IHRWQFVADKVSDDLFIRVMLQ------RYKNMVRASFPGLYLGSVKNLLKMVNKEFPEL 328

Query:   307 GLVKEDCIEMSWIESIMYFAGFRGQSLDVLLNRTQPNVRFFKAKSDFVYDPMPEIAFQGI 366
             GL ++DC EMSWIES+++FA    + ++VL  RT+ ++ F KAKSDFV +PMP+ A   +
Sbjct:   329 GLEEDDCTEMSWIESVIWFAELGEEPINVLTKRTRASLAF-KAKSDFVQEPMPKTAISKL 387

Query:   367 YERFYEKEAEAAEMILSPYGGVMNQISDSATPFPHRAGTRYKIQHIVYWEEEGSEASQRH 426
             + R  E EAE A++I +P+GG M++I+D  TPFPHR G  Y+IQ++ YW     +  +++
Sbjct:   388 WRRLQEPEAEHAQLIFTPFGGKMSEIADYETPFPHRKGNIYEIQYLNYWR---GDVKEKY 444

Query:   427 ISWIRRLYDYVAPYVSKNPRAAYLNYRDLDIGTN-NKGYTSYKQASIWGLKYFKNNFKRL 485
             + W+ R+YD ++ +V+K+PR AY+N RDLD+G       + Y++   WG+KYFKNNF+RL
Sbjct:   445 MRWVERVYDDMSEFVAKSPRGAYINLRDLDLGMYVGVKRSKYEEGKSWGVKYFKNNFERL 504

Query:   486 VDVKTMVDPGNFFRNEQSIPPLS 508
             V VKT VDP +FF +EQSIPP +
Sbjct:   505 VRVKTSVDPSDFFCDEQSIPPFT 527
GO:0003824 "catalytic activity" evidence=IEA
GO:0008762 "UDP-N-acetylmuramate dehydrogenase activity" evidence=IEA
GO:0009055 "electron carrier activity" evidence=ISS
GO:0009507 "chloroplast" evidence=ISM
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016614 "oxidoreductase activity, acting on CH-OH group of donors" evidence=IEA
GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
TAIR|locus:2204579 AT1G30760 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2044692 MEE23 "MATERNAL EFFECT EMBRYO ARREST 23" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2158740 AT5G44400 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2163441 AT5G44440 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2204604 AT1G30700 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2158720 AT5G44380 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2158730 AT5G44390 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2158700 AT5G44360 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2163411 AT5G44410 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8GTB6THCAS_CANSA1, ., 2, 1, ., 3, ., 70.52050.96500.9119N/Ano
A6P6W0CASL1_CANSANo assigned EC number0.51340.98250.9284N/Ano
A6P6W1CASL2_CANSANo assigned EC number0.51150.98250.9284N/Ano
Q33DQ2THCAI_CANSANo assigned EC number0.51250.97660.9229N/Ano
A6P6V9CBDAS_CANSA1, ., 2, 1, ., 3, ., 80.51650.97080.9191N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.21.3LOW CONFIDENCE prediction!
3rd Layer1.21.3.3LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.202.20.1
hypothetical protein (503 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query515
pfam01565139 pfam01565, FAD_binding_4, FAD binding domain 2e-32
COG0277459 COG0277, GlcD, FAD/FMN-containing dehydrogenases [ 1e-27
pfam0803145 pfam08031, BBE, Berberine and berberine like 1e-17
TIGR01679419 TIGR01679, bact_FAD_ox, FAD-linked oxidoreductase 2e-05
PLN02805555 PLN02805, PLN02805, D-lactate dehydrogenase [cytoc 7e-04
>gnl|CDD|216574 pfam01565, FAD_binding_4, FAD binding domain Back     alignment and domain information 
 Score =  120 bits (303), Expect = 2e-32
 Identities = 44/141 (31%), Positives = 68/141 (48%), Gaps = 5/141 (3%)

Query: 54  PQVIVTPVKESHVQAAVKCSQKYGLQVRVRSGGHDYEGLSYVSNYHVPFVIIDFINLSSV 113
           P  +V P  E  V A V+ + + GL V VR GG    G + ++      V++D   L+ +
Sbjct: 1   PAAVVRPESEEEVAAIVRLANENGLPVLVRGGGSSLLGDAVLTG----GVVLDLSRLNGI 56

Query: 114 -SVDPEAKTAWVQAGATNGKVYHTIAEKSKTLAFPAGVCPTVGVGGLFSGGGYGFLMRKY 172
             +DPE  TA V+AG T G +   +A K   L    G      VGG  +  G G+   +Y
Sbjct: 57  LEIDPEDGTATVEAGVTLGDLVRALAAKGLLLGLEPGSGIPGTVGGAIATNGGGYGSERY 116

Query: 173 GLAADNVVDAHLIDVNGRLLD 193
           GL  DNV+   ++  +G ++ 
Sbjct: 117 GLTRDNVLSLEVVLADGEVVR 137

This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidises the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan. Length = 139
>gnl|CDD|223354 COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|219706 pfam08031, BBE, Berberine and berberine like Back     alignment and domain information
>gnl|CDD|130740 TIGR01679, bact_FAD_ox, FAD-linked oxidoreductase Back     alignment and domain information
>gnl|CDD|178402 PLN02805, PLN02805, D-lactate dehydrogenase [cytochrome] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 515
PLN02441525 cytokinin dehydrogenase 100.0
PLN02805555 D-lactate dehydrogenase [cytochrome] 100.0
TIGR01678438 FAD_lactone_ox sugar 1,4-lactone oxidases. This mo 100.0
PRK11230499 glycolate oxidase subunit GlcD; Provisional 100.0
TIGR01677557 pln_FAD_oxido plant-specific FAD-dependent oxidore 100.0
COG0277459 GlcD FAD/FMN-containing dehydrogenases [Energy pro 100.0
TIGR01679419 bact_FAD_ox FAD-linked oxidoreductase. This model 100.0
TIGR01676541 GLDHase galactonolactone dehydrogenase. This model 100.0
KOG1231505 consensus Proteins containing the FAD binding doma 99.97
TIGR00387413 glcD glycolate oxidase, subunit GlcD. This protein 99.97
PRK11282352 glcE glycolate oxidase FAD binding subunit; Provis 99.97
PLN02465573 L-galactono-1,4-lactone dehydrogenase 99.96
PF01565139 FAD_binding_4: FAD binding domain This is only a s 99.95
PRK11183564 D-lactate dehydrogenase; Provisional 99.92
PRK13905298 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.92
KOG4730518 consensus D-arabinono-1, 4-lactone oxidase [Defens 99.9
PRK14652302 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.88
TIGR00179284 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.88
PRK12436305 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.88
KOG1232511 consensus Proteins containing the FAD binding doma 99.88
PRK13906307 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.87
PRK13903363 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.86
PRK14649295 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.83
KOG1233613 consensus Alkyl-dihydroxyacetonephosphate synthase 99.82
PRK14653297 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.77
COG0812291 MurB UDP-N-acetylmuramate dehydrogenase [Cell enve 99.73
PRK14650302 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.72
PRK00046334 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.71
PF0803147 BBE: Berberine and berberine like ; InterPro: IPR0 99.67
PRK14648354 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.67
PRK14651273 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.55
KOG1262543 consensus FAD-binding protein DIMINUTO [General fu 99.49
PRK13904257 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.27
PRK09799258 putative oxidoreductase; Provisional 96.08
PF00941171 FAD_binding_5: FAD binding domain in molybdopterin 96.02
TIGR03312257 Se_sel_red_FAD probable selenate reductase, FAD-bi 95.35
PF09265281 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and c 95.32
PLN00107257 FAD-dependent oxidoreductase; Provisional 94.13
TIGR02963467 xanthine_xdhA xanthine dehydrogenase, small subuni 92.26
TIGR03195321 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta s 90.49
PRK09971291 xanthine dehydrogenase subunit XdhB; Provisional 90.18
PF02913248 FAD-oxidase_C: FAD linked oxidases, C-terminal dom 89.8
PF04030259 ALO: D-arabinono-1,4-lactone oxidase ; InterPro: I 88.63
TIGR03199264 pucC xanthine dehydrogenase C subunit. This gene h 87.84
PLN00192 1344 aldehyde oxidase 83.31
PLN02906 1319 xanthine dehydrogenase 83.12
COG4630493 XdhA Xanthine dehydrogenase, iron-sulfur cluster a 82.82
>PLN02441 cytokinin dehydrogenase Back     alignment and domain information 
Probab=100.00  E-value=2e-39  Score=339.76  Aligned_cols=190  Identities=23%  Similarity=0.300  Sum_probs=169.8

Q ss_pred             CCCCCCCCCccEEEecCCHHHHHHHHHHHH--hCCCeEEEEcCCCCCCCCCcccCCCCCEEEEEcCCCCc------E-EE
Q 048392           45 RFSTPTTPKPQVIVTPVKESHVQAAVKCSQ--KYGLQVRVRSGGHDYEGLSYVSNYHVPFVIIDFINLSS------V-SV  115 (515)
Q Consensus        45 r~~~~~~~~p~~vv~p~~~~dv~~~v~~a~--~~~~~~~~~g~Gh~~~~~~~~~~~~~~gvvIdl~~l~~------v-~~  115 (515)
                      .|+......|.+|++|+|++||+++|++|+  +++++|++||+|||+.|.+...+    |++|||++||+      + ++
T Consensus        56 d~g~~~~~~P~aVv~P~S~eDVa~iVr~A~~~~~~~~V~~rGgGHS~~G~a~~~~----GivIdms~Ln~i~~~~~ii~v  131 (525)
T PLN02441         56 DFGNLVHSLPAAVLYPSSVEDIASLVRAAYGSSSPLTVAARGHGHSLNGQAQAPG----GVVVDMRSLRGGVRGPPVIVV  131 (525)
T ss_pred             CcccccCCCCCEEEeCCCHHHHHHHHHHHhhccCCceEEEECCCcCCCCCccCCC----eEEEECCCCCCcCccCceEEE
Confidence            488877889999999999999999999997  67999999999999998887655    89999999999      4 78


Q ss_pred             cCCCCEEEEcCCCCHHHHHHHHHHhCCcceecC-CCCCcccchhhhhCCCCCCcccccccccceEeEEEEEecCCcEEe-
Q 048392          116 DPEAKTAWVQAGATNGKVYHTIAEKSKTLAFPA-GVCPTVGVGGLFSGGGYGFLMRKYGLAADNVVDAHLIDVNGRLLD-  193 (515)
Q Consensus       116 d~~~~~v~v~aG~~~~~l~~~l~~~g~~l~~~~-g~~~~vgigG~~~ggg~g~~~~~~G~~~d~v~~~~vv~~~G~~~~-  193 (515)
                      |.+..+|+|++|++|.+|.+++.++|  ++.+. +.+..++|||.++++|.|..+.+||..+|+|++++||+++|++++ 
T Consensus       132 d~~~~~VtV~aG~~~~dv~~~l~~~G--laP~~~~d~~~~TVGG~ist~G~gg~s~ryG~~~d~Vl~leVVtadGevv~~  209 (525)
T PLN02441        132 SGDGPYVDVSGGELWIDVLKATLKHG--LAPRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLELDVVTGKGEVVTC  209 (525)
T ss_pred             cCCCCEEEEcCCCCHHHHHHHHHHCC--CccCCccccCceEEeEEcCCCCccccccccCcHHHhEEEEEEEeCCceEEEe
Confidence            88999999999999999999999985  54333 566788999999999999999999999999999999999999997 


Q ss_pred             cCCCCcchhhhhhcccCCceeEEEEEEEEEEeeCceEEEEEEeecchh
Q 048392          194 RKSMGEDLFWAIRGGGGASFGVIIAWKIKLVTVPEIVTAFTVNRTLEQ  241 (515)
Q Consensus       194 ~~~~~~dL~~a~rg~~~g~~Givt~~~~~l~~~~~~~~~~~~~~~~~~  241 (515)
                      +..+|+|||||++||+ |+|||||+++||++|.|+.+.++.+.+...+
T Consensus       210 s~~~n~DLF~Av~Ggl-G~fGIIT~atlrL~Pap~~v~~~~~~y~~~~  256 (525)
T PLN02441        210 SPTQNSDLFFAVLGGL-GQFGIITRARIALEPAPKRVRWIRVLYSDFS  256 (525)
T ss_pred             CCCCChhHHHhhccCC-CCcEEEEEEEEEEEecCCceEEEEEEcCCHH
Confidence            6678999999999987 8999999999999999997777666665433

>PLN02805 D-lactate dehydrogenase [cytochrome] Back     alignment and domain information
>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases Back     alignment and domain information
>PRK11230 glycolate oxidase subunit GlcD; Provisional Back     alignment and domain information
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase Back     alignment and domain information
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion] Back     alignment and domain information
>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase Back     alignment and domain information
>TIGR01676 GLDHase galactonolactone dehydrogenase Back     alignment and domain information
>KOG1231 consensus Proteins containing the FAD binding domain [Energy production and conversion] Back     alignment and domain information
>TIGR00387 glcD glycolate oxidase, subunit GlcD Back     alignment and domain information
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional Back     alignment and domain information
>PLN02465 L-galactono-1,4-lactone dehydrogenase Back     alignment and domain information
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage Back     alignment and domain information
>PRK11183 D-lactate dehydrogenase; Provisional Back     alignment and domain information
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms] Back     alignment and domain information
>PRK14652 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>TIGR00179 murB UDP-N-acetylenolpyruvoylglucosamine reductase Back     alignment and domain information
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>KOG1232 consensus Proteins containing the FAD binding domain [Energy production and conversion] Back     alignment and domain information
>PRK13906 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14649 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>KOG1233 consensus Alkyl-dihydroxyacetonephosphate synthase [General function prediction only] Back     alignment and domain information
>PRK14653 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>COG0812 MurB UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK14650 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK00046 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PF08031 BBE: Berberine and berberine like ; InterPro: IPR012951 This domain is found in the berberine bridge and berberine bridge-like enzymes, which are involved in the biosynthesis of numerous isoquinoline alkaloids Back     alignment and domain information
>PRK14648 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14651 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>KOG1262 consensus FAD-binding protein DIMINUTO [General function prediction only] Back     alignment and domain information
>PRK13904 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK09799 putative oxidoreductase; Provisional Back     alignment and domain information
>PF00941 FAD_binding_5: FAD binding domain in molybdopterin dehydrogenase; InterPro: IPR002346 Oxidoreductases, that also bind molybdopterin, have essentially no similarity outside this common domain Back     alignment and domain information
>TIGR03312 Se_sel_red_FAD probable selenate reductase, FAD-binding subunit Back     alignment and domain information
>PF09265 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and cytokinin binding; InterPro: IPR015345 This domain adopts an alpha+beta sandwich structure with an antiparallel beta-sheet, in a ferredoxin-like fold Back     alignment and domain information
>PLN00107 FAD-dependent oxidoreductase; Provisional Back     alignment and domain information
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit Back     alignment and domain information
>TIGR03195 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta subunit Back     alignment and domain information
>PRK09971 xanthine dehydrogenase subunit XdhB; Provisional Back     alignment and domain information
>PF02913 FAD-oxidase_C: FAD linked oxidases, C-terminal domain; InterPro: IPR004113 Some oxygen-dependent oxidoreductases are flavoproteins that contain a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage Back     alignment and domain information
>PF04030 ALO: D-arabinono-1,4-lactone oxidase ; InterPro: IPR007173 This domain is specific to D-arabinono-1,4-lactone oxidase 1 Back     alignment and domain information
>TIGR03199 pucC xanthine dehydrogenase C subunit Back     alignment and domain information
>PLN00192 aldehyde oxidase Back     alignment and domain information
>PLN02906 xanthine dehydrogenase Back     alignment and domain information
>COG4630 XdhA Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A [Nucleotide transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query515
3vte_A518 Crystal Structure Of Tetrahydrocannabinolic Acid Sy 1e-149
3tsh_A500 Crystal Structure Of Phl P 4, A Grass Pollen Allerg 1e-128
4dns_A497 Crystal Structure Of Bermuda Grass Isoallergen Bg60 1e-127
3d2d_A538 Structure Of Berberine Bridge Enzyme In Complex Wit 1e-106
3fw9_A495 Structure Of Berberine Bridge Enzyme In Complex Wit 1e-106
4ec3_A519 Structure Of Berberine Bridge Enzyme, H174a Variant 1e-106
3gsy_A519 Structure Of Berberine Bridge Enzyme In Complex Wit 1e-106
3fw7_A498 Structure Of Berberine Bridge Enzyme, H104a Variant 1e-104
3fwa_A497 Structure Of Berberine Bridge Enzyme, C166a Variant 1e-104
3fw8_A495 Structure Of Berberine Bridge Enzyme, C166a Variant 1e-104
3rj8_A473 Crystal Structure Of Carbohydrate Oxidase From Micr 3e-18
2ipi_A521 Crystal Structure Of Aclacinomycin Oxidoreductase L 4e-16
2wdw_A523 The Native Crystal Structure Of The Primary Hexose 1e-15
2bvf_A459 Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase Fr 2e-13
1zr6_A503 The Crystal Structure Of An Acremonium Strictum Glu 1e-11
3pop_A501 The Crystal Structure Of Gilr, An Oxidoreductase Th 2e-11
3hsu_A503 Functional Roles Of The 6-S-Cysteinyl, 8 Alpha-N1-H 2e-10
2y08_A530 Structure Of The Substrate-Free Fad-Dependent Tiran 2e-07
2y08_A530 Structure Of The Substrate-Free Fad-Dependent Tiran 2e-07
>pdb|3VTE|A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase From Cannabis Sativa Length = 518 Back     alignment and structure 
Iteration: 1

 Score =  525 bits (1353), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 253/511 (49%), Positives = 349/511 (68%), Gaps = 14/511 (2%)
Query: 7   FVQCLLENSEDSTSISKLIYTRTNSSFSSILDFSIQNLRFSTPTTPKPQVIVTPVKESHV 66
           F++C  ++  ++ +  KL+YT+ +  + SIL+ +IQNLRF + TTPKP VIVTP   SH+
Sbjct: 7   FLKCFSKHIPNNVANPKLVYTQHDQLYMSILNSTIQNLRFISDTTPKPLVIVTPSNNSHI 66
Query: 67  QAAVKCSQKYGLQVRVRSGGHDYEGLSYVSNYHVPFVIIDFINLSSVSVDPEAKTAWVQA 126
           QA + CS+K GLQ+R RSGGHD EG+SY+S   VPFV++D  N+ S+ +D  ++TAWV+A
Sbjct: 67  QATILCSKKVGLQIRTRSGGHDAEGMSYIS--QVPFVVVDLRNMHSIKIDVHSQTAWVEA 124
Query: 127 GATNGKVYHTIAEKSKTLAFPAGVCPTXXXXXXXXXXXXXXXMRKYGLAADNVVDAHLID 186
           GAT G+VY+ I EK++ L+FP G CPT               MR YGLAADN++DAHL++
Sbjct: 125 GATLGEVYYWINEKNENLSFPGGYCPTVGVGGHFSGGGYGALMRNYGLAADNIIDAHLVN 184
Query: 187 VNGRLLDRKSMGEDLFWAIRGGGGASFGVIIAWKIKLVTVPEIVTAFTVNRTLE-QNATK 245
           V+G++LDRKSMGEDLFWAIRGGGG +FG+I AWKIKLV VP   T F+V + +E     K
Sbjct: 185 VDGKVLDRKSMGEDLFWAIRGGGGENFGIIAAWKIKLVAVPSKSTIFSVKKNMEIHGLVK 244
Query: 246 IVDRWQHVADNLDEDLYIRVFLRSAN---SSTQGKKTIRASFESLFLGGADVLLPLMQHS 302
           + ++WQ++A   D+DL +     + N   +  + K T+   F S+F GG D L+ LM  S
Sbjct: 245 LFNKWQNIAYKYDKDLVLMTHFITKNITDNHGKNKTTVHGYFSSIFHGGVDSLVDLMNKS 304
Query: 303 FPELGLVKEDCIEMSWIESIMYFAG---FRGQSL--DVLLNRTQPNVRFFKAKSDFVYDP 357
           FPELG+ K DC E SWI++ ++++G   F   +   ++LL+R+      F  K D+V  P
Sbjct: 305 FPELGIKKTDCKEFSWIDTTIFYSGVVNFNTANFKKEILLDRSAGKKTAFSIKLDYVKKP 364
Query: 358 MPEIAFQGIYERFYEKEAEAAEMILSPYGGVMNQISDSATPFPHRAGTRYKIQHIVYWEE 417
           +PE A   I E+ YE++  A   +L PYGG+M +IS+SA PFPHRAG  Y++ +   WE+
Sbjct: 365 IPETAMVKILEKLYEEDVGAGMYVLYPYGGIMEEISESAIPFPHRAGIMYELWYTASWEK 424
Query: 418 EGSEASQRHISWIRRLYDYVAPYVSKNPRAAYLNYRDLDIG-TNNKGYTSYKQASIWGLK 476
           +  E +++HI+W+R +Y++  PYVS+NPR AYLNYRDLD+G TN+    +Y QA IWG K
Sbjct: 425 Q--EDNEKHINWVRSVYNFTTPYVSQNPRLAYLNYRDLDLGKTNHASPNNYTQARIWGEK 482
Query: 477 YFKNNFKRLVDVKTMVDPGNFFRNEQSIPPL 507
           YF  NF RLV VKT VDP NFFRNEQSIPPL
Sbjct: 483 YFGKNFNRLVKVKTKVDPNNFFRNEQSIPPL 513
>pdb|3TSH|A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With Glucose Dehydrogenase Activity Length = 500 Back     alignment and structure
>pdb|4DNS|A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens Length = 497 Back     alignment and structure
>pdb|3D2D|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With (S)-Reticuline Length = 538 Back     alignment and structure
>pdb|3FW9|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With (S)-Scoulerine Length = 495 Back     alignment and structure
>pdb|4EC3|A Chain A, Structure Of Berberine Bridge Enzyme, H174a Variant In Complex With (S)-Reticuline Length = 519 Back     alignment and structure
>pdb|3GSY|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With Dehydroscoulerine Length = 519 Back     alignment and structure
>pdb|3FW7|A Chain A, Structure Of Berberine Bridge Enzyme, H104a Variant Length = 498 Back     alignment and structure
>pdb|3FWA|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant In Complex With (S)-Reticuline Length = 497 Back     alignment and structure
>pdb|3FW8|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant Length = 495 Back     alignment and structure
>pdb|3RJ8|A Chain A, Crystal Structure Of Carbohydrate Oxidase From Microdochium Nivale Length = 473 Back     alignment and structure
>pdb|2IPI|A Chain A, Crystal Structure Of Aclacinomycin Oxidoreductase Length = 521 Back     alignment and structure
>pdb|2WDW|A Chain A, The Native Crystal Structure Of The Primary Hexose Oxidase ( Dbv29) In Antibiotic A40926 Biosynthesis Length = 523 Back     alignment and structure
>pdb|2BVF|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From Arthrobacter Nicotinovorans. Crystal Form 3 (P1) Length = 459 Back     alignment and structure
>pdb|1ZR6|A Chain A, The Crystal Structure Of An Acremonium Strictum Glucooligosaccharide Oxidase Reveals A Novel Flavinylation Length = 503 Back     alignment and structure
>pdb|3POP|A Chain A, The Crystal Structure Of Gilr, An Oxidoreductase That Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis Length = 501 Back     alignment and structure
>pdb|3HSU|A Chain A, Functional Roles Of The 6-S-Cysteinyl, 8 Alpha-N1-Histidyl Fad In Glucooligosaccharide Oxidase From Acremonium Strictum Length = 503 Back     alignment and structure
>pdb|2Y08|A Chain A, Structure Of The Substrate-Free Fad-Dependent Tirandamycin Oxidase Taml Length = 530 Back     alignment and structure
>pdb|2Y08|A Chain A, Structure Of The Substrate-Free Fad-Dependent Tirandamycin Oxidase Taml Length = 530 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query515
3vte_A518 Tetrahydrocannabinolic acid synthase; BI-covalent 0.0
3fw9_A495 Reticuline oxidase; BI-covalent flavinylation, N-g 0.0
3rja_A473 Carbohydrate oxidase; protein-substrate analogue c 0.0
2ipi_A521 Aclacinomycin oxidoreductase (aknox); anthracyclin 0.0
1zr6_A503 Glucooligosaccharide oxidase; alpha + beta, flavoe 0.0
3pop_A501 GILR oxidase; FAD binding protein, gilvocarcin, gi 0.0
2wdx_A523 Putative hexose oxidase; oxidoreductase-antibiotic 1e-180
2y3s_A530 TAML; oxidoreductase; HET: FAD TIR; 1.67A {Strepto 1e-173
2bvf_A459 6-hydroxy-D-nicotine oxidase; autoflavinylation, e 1e-127
2exr_A524 Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin 8e-53
1w1o_A534 Cytokinin dehydrogenase 1; flavin, oxidoreductase, 4e-42
2vfr_A422 Xylitol oxidase, alditol oxidase; FAD, sugar, poly 2e-22
4feh_A481 Oxidoreductase DPRE1; alpha+beta, decaprenylphosph 1e-19
3js8_A540 Cholesterol oxidase; cholsterol, organic solvent s 2e-16
2i0k_A561 Oxidoreductase; MIX alpha beta, covalent FAD, flav 3e-14
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-09
1wvf_A520 4-cresol dehydrogenase [hydroxylating] flavoprote 1e-08
1e8g_A560 Vanillyl-alcohol oxidase; oxidoreductase, flavoenz 1e-07
1f0x_A571 DLDH, D-lactate dehydrogenase; oxidoreductase; HET 1e-05
2uuu_A584 Alkyldihydroxyacetonephosphate synthase; transfera 1e-05
2yvs_A219 Glycolate oxidase subunit GLCE; oxidoreductase; 2. 2e-04
>3vte_A Tetrahydrocannabinolic acid synthase; BI-covalent flavinylation, oxidoreductase; HET: NAG FAD; 2.75A {Cannabis sativa} Length = 518 Back     alignment and structure
 Score =  617 bits (1592), Expect = 0.0
 Identities = 264/514 (51%), Positives = 358/514 (69%), Gaps = 14/514 (2%)

Query: 7   FVQCLLENSEDSTSISKLIYTRTNSSFSSILDFSIQNLRFSTPTTPKPQVIVTPVKESHV 66
           F++C  ++  ++ +  KL+YT+ +  + SIL+ +IQNLRF + TTPKP VIVTP   SH+
Sbjct: 7   FLKCFSKHIPNNVANPKLVYTQHDQLYMSILNSTIQNLRFISDTTPKPLVIVTPSNNSHI 66

Query: 67  QAAVKCSQKYGLQVRVRSGGHDYEGLSYVSNYHVPFVIIDFINLSSVSVDPEAKTAWVQA 126
           QA + CS+K GLQ+R RSGGHD EG+SY+S   VPFV++D  N+ S+ +D  ++TAWV+A
Sbjct: 67  QATILCSKKVGLQIRTRSGGHDAEGMSYISQ--VPFVVVDLRNMHSIKIDVHSQTAWVEA 124

Query: 127 GATNGKVYHTIAEKSKTLAFPAGVCPTVGVGGLFSGGGYGFLMRKYGLAADNVVDAHLID 186
           GAT G+VY+ I EK++ L+FP G CPTVGVGG FSGGGYG LMR YGLAADN++DAHL++
Sbjct: 125 GATLGEVYYWINEKNENLSFPGGYCPTVGVGGHFSGGGYGALMRNYGLAADNIIDAHLVN 184

Query: 187 VNGRLLDRKSMGEDLFWAIRGGGGASFGVIIAWKIKLVTVPEIVTAFTVNRTLE-QNATK 245
           V+G++LDRKSMGEDLFWAIRGGGG +FG+I AWKIKLV VP   T F+V + +E     K
Sbjct: 185 VDGKVLDRKSMGEDLFWAIRGGGGENFGIIAAWKIKLVAVPSKSTIFSVKKNMEIHGLVK 244

Query: 246 IVDRWQHVADNLDEDLYIRVFLRSAN---SSTQGKKTIRASFESLFLGGADVLLPLMQHS 302
           + ++WQ++A   D+DL +     + N   +  + K T+   F S+F GG D L+ LM  S
Sbjct: 245 LFNKWQNIAYKYDKDLVLMTHFITKNITDNHGKNKTTVHGYFSSIFHGGVDSLVDLMNKS 304

Query: 303 FPELGLVKEDCIEMSWIESIMYFAGF-----RGQSLDVLLNRTQPNVRFFKAKSDFVYDP 357
           FPELG+ K DC E SWI++ ++++G           ++LL+R+      F  K D+V  P
Sbjct: 305 FPELGIKKTDCKEFSWIDTTIFYSGVVNFNTANFKKEILLDRSAGKKTAFSIKLDYVKKP 364

Query: 358 MPEIAFQGIYERFYEKEAEAAEMILSPYGGVMNQISDSATPFPHRAGTRYKIQHIVYWEE 417
           +PE A   I E+ YE++  A   +L PYGG+M +IS+SA PFPHRAG  Y++ +   WE+
Sbjct: 365 IPETAMVKILEKLYEEDVGAGMYVLYPYGGIMEEISESAIPFPHRAGIMYELWYTASWEK 424

Query: 418 EGSEASQRHISWIRRLYDYVAPYVSKNPRAAYLNYRDLDIGTNN-KGYTSYKQASIWGLK 476
           +  E +++HI+W+R +Y++  PYVS+NPR AYLNYRDLD+G  N     +Y QA IWG K
Sbjct: 425 Q--EDNEKHINWVRSVYNFTTPYVSQNPRLAYLNYRDLDLGKTNHASPNNYTQARIWGEK 482

Query: 477 YFKNNFKRLVDVKTMVDPGNFFRNEQSIPPLSSR 510
           YF  NF RLV VKT VDP NFFRNEQSIPPL   
Sbjct: 483 YFGKNFNRLVKVKTKVDPNNFFRNEQSIPPLPPH 516
>3fw9_A Reticuline oxidase; BI-covalent flavinylation, N-glycosylation, alakloid biosynt oxidoreductase, alkaloid metabolism; HET: FAD SLX NAG MAN; 1.49A {Eschscholzia californica} PDB: 3d2h_A* 3d2d_A* 3d2j_A* 3gsy_A* 3fw8_A* 3fw7_A* 3fwa_A* Length = 495 Back     alignment and structure
>3rja_A Carbohydrate oxidase; protein-substrate analogue complex, FAD binding domain, BERB berberine-like domain, glucooligosaccharide oxidase; HET: FAD NAG ABL TRS; 2.10A {Microdochium nivale} PDB: 3rj8_A* Length = 473 Back     alignment and structure
>2ipi_A Aclacinomycin oxidoreductase (aknox); anthracycline, flavoenzyme, twinning, MAD; HET: AKY FAD; 1.65A {Streptomyces galilaeus} Length = 521 Back     alignment and structure
>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme, oxidoreductase; HET: NAG FAD; 1.55A {Acremonium strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A* Length = 503 Back     alignment and structure
>3pop_A GILR oxidase; FAD binding protein, gilvocarcin, gilvocarcin biosynthesis, covalently bound FAD, oxidoreductase; HET: FAD; 1.65A {Streptomyces griseoflavus} PDB: 3pqb_A* Length = 501 Back     alignment and structure
>2wdx_A Putative hexose oxidase; oxidoreductase-antibiotic complex, glycopeptide; HET: FAD GHP 3MY 3FG OMY BMA NAG N1L T55; 2.30A {Nonomuraea SP} PDB: 2wdw_A* Length = 523 Back     alignment and structure
>2y3s_A TAML; oxidoreductase; HET: FAD TIR; 1.67A {Streptomyces SP} PDB: 2y3r_A* 2y08_A* 2y4g_A* Length = 530 Back     alignment and structure
>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric substrates, flavoenzymes, NI degradation; HET: FAD; 1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A* Length = 459 Back     alignment and structure
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A* Length = 524 Back     alignment and structure
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4 d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A* 3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A* Length = 534 Back     alignment and structure
>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin, flavoprotein, oxidoreductase; HET: FAD; 1.1A {Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A* 2vfv_A* Length = 422 Back     alignment and structure
>4feh_A Oxidoreductase DPRE1; alpha+beta, decaprenylphosphoryl-beta-D-RIBO; HET: FAD; 2.04A {Mycobacterium tuberculosis} PDB: 4fdo_A* 4fdn_A* 4fdp_A* 4ff6_A* Length = 481 Back     alignment and structure
>3js8_A Cholesterol oxidase; cholsterol, organic solvent stability, oxygen channel, FAD, flavoprotein, oxidoreductase; HET: FAD SUC; 1.54A {Chromobacterium SP} Length = 540 Back     alignment and structure
>2i0k_A Oxidoreductase; MIX alpha beta, covalent FAD, flavoenzyme; HET: FAD; 1.60A {Brevibacterium sterolicum} SCOP: d.58.32.3 d.145.1.1 PDB: 1i19_A* Length = 561 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A* Length = 520 Back     alignment and structure
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A* Length = 560 Back     alignment and structure
>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: d.58.32.2 d.145.1.1 Length = 571 Back     alignment and structure
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A* Length = 584 Back     alignment and structure
>2yvs_A Glycolate oxidase subunit GLCE; oxidoreductase; 2.00A {Thermus thermophilus} Length = 219 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query515
3vte_A518 Tetrahydrocannabinolic acid synthase; BI-covalent 100.0
3fw9_A495 Reticuline oxidase; BI-covalent flavinylation, N-g 100.0
3tsh_A500 Pollen allergen PHL P 4; flavoprotein, BI-covalent 100.0
3rja_A473 Carbohydrate oxidase; protein-substrate analogue c 100.0
3pop_A501 GILR oxidase; FAD binding protein, gilvocarcin, gi 100.0
2ipi_A521 Aclacinomycin oxidoreductase (aknox); anthracyclin 100.0
2wdx_A523 Putative hexose oxidase; oxidoreductase-antibiotic 100.0
1zr6_A503 Glucooligosaccharide oxidase; alpha + beta, flavoe 100.0
2y3s_A530 TAML; oxidoreductase; HET: FAD TIR; 1.67A {Strepto 100.0
2bvf_A459 6-hydroxy-D-nicotine oxidase; autoflavinylation, e 100.0
1w1o_A534 Cytokinin dehydrogenase 1; flavin, oxidoreductase, 100.0
3pm9_A476 Putative oxidoreductase; putative D-2-hydroxygluta 100.0
2exr_A524 Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin 100.0
4bby_A658 Alkyldihydroxyacetonephosphate synthase, peroxiso; 100.0
1wvf_A520 4-cresol dehydrogenase [hydroxylating] flavoprote 100.0
4feh_A481 Oxidoreductase DPRE1; alpha+beta, decaprenylphosph 100.0
2vfr_A422 Xylitol oxidase, alditol oxidase; FAD, sugar, poly 99.98
2uuu_A584 Alkyldihydroxyacetonephosphate synthase; transfera 99.98
1e8g_A560 Vanillyl-alcohol oxidase; oxidoreductase, flavoenz 99.97
2i0k_A561 Oxidoreductase; MIX alpha beta, covalent FAD, flav 99.96
3js8_A540 Cholesterol oxidase; cholsterol, organic solvent s 99.96
1f0x_A571 DLDH, D-lactate dehydrogenase; oxidoreductase; HET 99.96
3tx1_A322 UDP-N-acetylenolpyruvoylglucosamine reductase; str 99.93
3i99_A357 UDP-N-acetylenolpyruvoylglucosamine reductase; str 99.92
1hsk_A326 UDP-N-acetylenolpyruvoylglucosamine reductase; pep 99.91
1uxy_A340 MURB, uridine diphospho-N-acetylenolpyruvylglucosa 99.91
2gqt_A268 UDP-N-acetylenolpyruvylglucosamine reductase; pept 99.87
2yvs_A219 Glycolate oxidase subunit GLCE; oxidoreductase; 2. 99.79
1ffv_C287 CUTM, flavoprotein of carbon monoxide dehydrogenas 98.25
1n62_C288 Carbon monoxide dehydrogenase medium chain; CODH, 97.59
2w3s_A462 Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2 97.37
3nvz_B305 Xanthine dehydrogenase/oxidase; hydroxylase, homod 96.49
1t3q_C288 Quinoline 2-oxidoreductase medium subunit; QOR, mo 96.3
3hrd_C296 Nicotinate dehydrogenase FAD-subunit; selenium lig 92.91
4bby_A658 Alkyldihydroxyacetonephosphate synthase, peroxiso; 87.46
1rm6_B324 4-hydroxybenzoyl-COA reductase beta subunit; xanth 87.28
>3vte_A Tetrahydrocannabinolic acid synthase; BI-covalent flavinylation, oxidoreductase; HET: NAG FAD; 2.75A {Cannabis sativa} Back     alignment and structure
Probab=100.00  E-value=2.7e-89  Score=724.78  Aligned_cols=503  Identities=53%  Similarity=0.978  Sum_probs=429.4

Q ss_pred             chhHHHHHHhhCCCCCCcccceEecCCCCCchhHHhhcccccCCCCCCCCCccEEEecCCHHHHHHHHHHHHhCCCeEEE
Q 048392            3 DAHKFVQCLLENSEDSTSISKLIYTRTNSSFSSILDFSIQNLRFSTPTTPKPQVIVTPVKESHVQAAVKCSQKYGLQVRV   82 (515)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~y~~~~~~~~~n~r~~~~~~~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~~   82 (515)
                      -.++|.+||+....+.+.+.+.|++|+++.|++++.++.+|.||+......|.+||+|++++||+++|++|+++++||+|
T Consensus         3 ~~~~f~~c~~~~~~~~~~~~~~v~~p~~~~y~~~~~~~~~n~rw~~~~~~~P~~vv~P~s~~dV~~~v~~a~~~~~~v~v   82 (518)
T 3vte_A            3 PRENFLKCFSKHIPNNVANPKLVYTQHDQLYMSILNSTIQNLRFISDTTPKPLVIVTPSNNSHIQATILCSKKVGLQIRT   82 (518)
T ss_dssp             HHHHHHHHHHHHCCC----CCCEECTTSTTHHHHHHHTCCBGGGCSSSSCCCSEEECCCSHHHHHHHHHHHHHHTCEEEE
T ss_pred             hhHHHHHHHHhcCCccCCCCceEECCCCcchHHHHhhhhcccccccccCCCCCEEEEeCCHHHHHHHHHHHHHcCCcEEE
Confidence            35789999999777778899999999999999998888999999998889999999999999999999999999999999


Q ss_pred             EcCCCCCCCCCcccCCCCCEEEEEcCCCCcEEEcCCCCEEEEcCCCCHHHHHHHHHHhCCcceecCCCCCcccchhhhhC
Q 048392           83 RSGGHDYEGLSYVSNYHVPFVIIDFINLSSVSVDPEAKTAWVQAGATNGKVYHTIAEKSKTLAFPAGVCPTVGVGGLFSG  162 (515)
Q Consensus        83 ~g~Gh~~~~~~~~~~~~~~gvvIdl~~l~~v~~d~~~~~v~v~aG~~~~~l~~~l~~~g~~l~~~~g~~~~vgigG~~~g  162 (515)
                      ||||||+.+.+...+  .++++|||++||+|++|++..+++||||+++.+|+++|.++|++|.+++|.|+++||||+++|
T Consensus        83 rggGh~~~g~~~~~~--~~gvvIdl~~l~~i~vd~~~~~v~V~aG~~l~~l~~~l~~~g~gl~~~~G~~~~vgvgG~~~g  160 (518)
T 3vte_A           83 RSGGHDAEGMSYISQ--VPFVVVDLRNMHSIKIDVHSQTAWVEAGATLGEVYYWINEKNENLSFPGGYCPTVGVGGHFSG  160 (518)
T ss_dssp             ESSCCCTTCTTTCCS--SSEEEEECTTCCCEEEETTTTEEEEETTCBHHHHHHHHHHHCTTEECCCCSCTTCBHHHHHHT
T ss_pred             ECCCcCCCCCccCCC--CCeEEEECCCCceeEEeCCCCEEEEeCCccHHHHHHHHHHhCCCceecCCCCCCeeeeeeeCC
Confidence            999999988774322  248999999999999999999999999999999999999998889999999999999999999


Q ss_pred             CCCCCcccccccccceEeEEEEEecCCcEEecCCCCcchhhhhhcccCCceeEEEEEEEEEEeeCceEEEEEEeecch-h
Q 048392          163 GGYGFLMRKYGLAADNVVDAHLIDVNGRLLDRKSMGEDLFWAIRGGGGASFGVIIAWKIKLVTVPEIVTAFTVNRTLE-Q  241 (515)
Q Consensus       163 gg~g~~~~~~G~~~d~v~~~~vv~~~G~~~~~~~~~~dL~~a~rg~~~g~~Givt~~~~~l~~~~~~~~~~~~~~~~~-~  241 (515)
                      ||+|+++++||+++|+|++++||++||++++.+.+++|||||+|||++|+|||||+++|||+|.|+.+..|.+.+... +
T Consensus       161 Gg~G~~s~~~G~~~D~V~~~evV~adG~iv~~~~~~~DLf~a~rGgg~g~fGIVt~~~l~l~p~p~~~~~~~~~~~~~~~  240 (518)
T 3vte_A          161 GGYGALMRNYGLAADNIIDAHLVNVDGKVLDRKSMGEDLFWAIRGGGGENFGIIAAWKIKLVAVPSKSTIFSVKKNMEIH  240 (518)
T ss_dssp             CCCCTTHHHHCCGGGGEEEEEEECTTCCEECHHHHCHHHHHHHTTSCGGGTCEEEEEEEECEECCSCEEEEEEEECCCHH
T ss_pred             CCCccccCCCCchhheEEEEEEEccCCeEEEeeccccchhhheecccCCCceEEEEEEEEEEeCCCeEEEEEEEecCCHH
Confidence            999999999999999999999999999999754468999999999855899999999999999999888888877654 5


Q ss_pred             HHHHHHHHHHHHHhhccccceEEEEEEeccCC---CCCCceeEEEEEEEEeCCccchhhhhhhhCCCCCCccccceecCH
Q 048392          242 NATKIVDRWQHVADNLDEDLYIRVFLRSANSS---TQGKKTIRASFESLFLGGADVLLPLMQHSFPELGLVKEDCIEMSW  318 (515)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~l~~~~~~~~~~~~  318 (515)
                      ++.+++.+|+++.+.+|++++..+.+...++.   ..+...+.+.+.++|+|+.+++.+.|.+.|++++....++.+++|
T Consensus       241 ~~~~~l~~~~~~~~~~p~~l~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~G~~~~~~~~l~~~~~~lg~~~~~~~~~~w  320 (518)
T 3vte_A          241 GLVKLFNKWQNIAYKYDKDLVLMTHFITKNITDNHGKNKTTVHGYFSSIFHGGVDSLVDLMNKSFPELGIKKTDCKEFSW  320 (518)
T ss_dssp             HHHHHHHHHHHHGGGSCTTEEEEEEEEEESCC-------CEEEEEEEEEEESCHHHHHHHHHHHCGGGCCCGGGEEEECH
T ss_pred             HHHHHHHHHHHHHHcCCHhHeEEEEEcccCCCCCCCcCCCceEEEEEEEEeCCHHHHhhhhhhhhhhcCCCccceeecch
Confidence            67889999999999999999998887653211   011122456788999999999988888777777766677899999


Q ss_pred             HHHHHHHhccCC--Cc---hhhhccCCCCCCcceeeeccCccCCCCHHHHHHHHHHHHhcCCceeEEEEEecCCccCCCC
Q 048392          319 IESIMYFAGFRG--QS---LDVLLNRTQPNVRFFKAKSDFVYDPMPEIAFQGIYERFYEKEAEAAEMILSPYGGVMNQIS  393 (515)
Q Consensus       319 ~~~~~~~~~~~~--~~---~~~~~~r~~~~~~~~~~~s~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~GGai~~v~  393 (515)
                      .+.+.++++++.  .+   ++.+.++......+||.||+|+.+++++++++.+++.+.+.+...+.++++++||++++++
T Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~ks~~~~~~l~~~~i~~l~~~~~~~~~~~~~v~~~~~GGa~~~v~  400 (518)
T 3vte_A          321 IDTTIFYSGVVNFNTANFKKEILLDRSAGKKTAFSIKLDYVKKPIPETAMVKILEKLYEEDVGAGMYVLYPYGGIMEEIS  400 (518)
T ss_dssp             HHHHHHTSSSCCC-----CGGGGGCTTCSCCBEEEEEEEEESSCCCHHHHHHHHHGGGGSCTTTEEEEEEECCGGGGTSC
T ss_pred             hhhhhhhhcCCccCCccchhhhhccCCcCcccceeeechhcccCCCHHHHHHHHHHHHhCCCCCeEEEEeecCccccCCC
Confidence            998888765431  23   4455555444456788999999989999999999998876443358899999999999999


Q ss_pred             CCCCCCcccCCCeEEEEEEEEeCCCChhhhHHHHHHHHHHHHhhccccCCCCCceecccCCCccC-CCCCCCcchhhhhh
Q 048392          394 DSATPFPHRAGTRYKIQHIVYWEEEGSEASQRHISWIRRLYDYVAPYVSKNPRAAYLNYRDLDIG-TNNKGYTSYKQASI  472 (515)
Q Consensus       394 ~~~tAf~~Rd~~~~~~~~~~~W~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~g~YvNYad~~~~-~~~~~~~~~~~~~~  472 (515)
                      .++|||+||++.+|.+++.+.|.++  +.++++.+|++++++.|.|+.+..+.++|+||+|.+++ .+..++++++.++.
T Consensus       401 ~~~TAf~hR~~~~~~~~~~~~w~~~--~~~~~~~~w~~~~~~~~~p~~~~~~~g~YvNy~D~dl~~~~~~~~~~~~~~~~  478 (518)
T 3vte_A          401 ESAIPFPHRAGIMYELWYTASWEKQ--EDNEKHINWVRSVYNFTTPYVSQNPRLAYLNYRDLDLGKTNHASPNNYTQARI  478 (518)
T ss_dssp             TTSSSCCCCTTCCEEEEEEEEECCT--TTHHHHHHHHHHHHHHTGGGSCCTTCCCCTTSCCGGGCCCCTTSCCCHHHHHH
T ss_pred             CCCCcccccCcceEEEEEEEecCCc--chhHHHHHHHHHHHHHhccccCCCCccccccCCCccccccccccccchhhhhh
Confidence            9999999998558999999999765  45678999999999999998654557899999998876 32234566777789


Q ss_pred             hHhhhhcccHHHHHHhhhccCCCCCcccCCCCCCCCc
Q 048392          473 WGLKYFKNNFKRLVDVKTMVDPGNFFRNEQSIPPLSS  509 (515)
Q Consensus       473 ~~~~yyG~n~~RL~~IK~kyDP~nvF~~~qsI~~~~~  509 (515)
                      |+++|||+||+||++||+||||+|||+++|||+|..+
T Consensus       479 w~~~Yyg~N~~RL~~vK~~yDP~n~F~~~QsI~p~~~  515 (518)
T 3vte_A          479 WGEKYFGKNFNRLVKVKTKVDPNNFFRNEQSIPPLPP  515 (518)
T ss_dssp             HHHHHSSTHHHHHHHHHHHHCTTCCSCCTTCCCCCCT
T ss_pred             HHHHHhHhHHHHHHHHHhhcCchhcccCCCCCCCCCC
Confidence            9999999999999999999999999999999998754
>3fw9_A Reticuline oxidase; BI-covalent flavinylation, N-glycosylation, alakloid biosynt oxidoreductase, alkaloid metabolism; HET: FAD SLX NAG MAN; 1.49A {Eschscholzia californica} PDB: 3d2h_A* 3d2d_A* 3d2j_A* 3gsy_A* 4ec3_A* 3fw8_A* 3fw7_A* 3fwa_A* Back     alignment and structure
>3tsh_A Pollen allergen PHL P 4; flavoprotein, BI-covalent flavinylation, oxidoreductase, Glu dehydrogenase, N-glycosylation, allergy, dehydrogenase; HET: FDA; 1.90A {Phleum pratense} PDB: 3tsj_A* Back     alignment and structure
>3rja_A Carbohydrate oxidase; protein-substrate analogue complex, FAD binding domain, BERB berberine-like domain, glucooligosaccharide oxidase; HET: FAD NAG ABL TRS; 2.10A {Microdochium nivale} PDB: 3rj8_A* Back     alignment and structure
>3pop_A GILR oxidase; FAD binding protein, gilvocarcin, gilvocarcin biosynthesis, covalently bound FAD, oxidoreductase; HET: FAD; 1.65A {Streptomyces griseoflavus} PDB: 3pqb_A* Back     alignment and structure
>2ipi_A Aclacinomycin oxidoreductase (aknox); anthracycline, flavoenzyme, twinning, MAD; HET: AKY FAD; 1.65A {Streptomyces galilaeus} Back     alignment and structure
>2wdx_A Putative hexose oxidase; oxidoreductase-antibiotic complex, glycopeptide; HET: FAD GHP 3MY 3FG OMY BMA NAG N1L T55; 2.30A {Nonomuraea SP} PDB: 2wdw_A* Back     alignment and structure
>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme, oxidoreductase; HET: NAG FAD; 1.55A {Acremonium strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A* Back     alignment and structure
>2y3s_A TAML; oxidoreductase; HET: FAD TIR; 1.67A {Streptomyces SP} PDB: 2y3r_A* 2y08_A* 2y4g_A* Back     alignment and structure
>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric substrates, flavoenzymes, NI degradation; HET: FAD; 1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A* Back     alignment and structure
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4 d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A* 3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A* Back     alignment and structure
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris} Back     alignment and structure
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A* Back     alignment and structure
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A* Back     alignment and structure
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A* Back     alignment and structure
>4feh_A Oxidoreductase DPRE1; alpha+beta, decaprenylphosphoryl-beta-D-RIBO; HET: FAD; 2.04A {Mycobacterium tuberculosis} PDB: 4fdo_A* 4fdn_A* 4fdp_A* 4ff6_A* 4aut_A* 4f4q_A* 4g3t_A 4g3u_A Back     alignment and structure
>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin, flavoprotein, oxidoreductase; HET: FAD; 1.1A {Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A* 2vfv_A* Back     alignment and structure
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A* Back     alignment and structure
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A* Back     alignment and structure
>2i0k_A Oxidoreductase; MIX alpha beta, covalent FAD, flavoenzyme; HET: FAD; 1.60A {Brevibacterium sterolicum} SCOP: d.58.32.3 d.145.1.1 PDB: 1i19_A* Back     alignment and structure
>3js8_A Cholesterol oxidase; cholsterol, organic solvent stability, oxygen channel, FAD, flavoprotein, oxidoreductase; HET: FAD SUC; 1.54A {Chromobacterium SP} Back     alignment and structure
>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: d.58.32.2 d.145.1.1 Back     alignment and structure
>3tx1_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: FAD; 2.69A {Listeria monocytogenes} Back     alignment and structure
>3i99_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural of infectious diseases, csgid; HET: FAD; 2.20A {Vibrio cholerae} Back     alignment and structure
>1hsk_A UDP-N-acetylenolpyruvoylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP, flavoprotein, FAD; HET: FAD; 2.30A {Staphylococcus aureus} SCOP: d.145.1.2 d.146.1.1 Back     alignment and structure
>1uxy_A MURB, uridine diphospho-N-acetylenolpyruvylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP; HET: FAD EPU; 1.80A {Escherichia coli} SCOP: d.145.1.2 d.146.1.1 PDB: 1mbb_A* 1mbt_A* 2q85_A* 2mbr_A* Back     alignment and structure
>2gqt_A UDP-N-acetylenolpyruvylglucosamine reductase; peptidoglycan biosynthesis, enolpyruvyl-UDP-N- acetylglucosamine, flavin adenine dinucleotide; HET: FAD; 1.30A {Thermus caldophilus} PDB: 2gqu_A* Back     alignment and structure
>2yvs_A Glycolate oxidase subunit GLCE; oxidoreductase; 2.00A {Thermus thermophilus} Back     alignment and structure
>1ffv_C CUTM, flavoprotein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: d.87.2.1 d.145.1.3 PDB: 1ffu_C* Back     alignment and structure
>1n62_C Carbon monoxide dehydrogenase medium chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: d.87.2.1 d.145.1.3 PDB: 1n5w_C* 1n61_C* 1n60_C* 1n63_C* 1zxi_C* Back     alignment and structure
>2w3s_A Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur, oxidoreductase, purine metabolism, molybdenum cofactor, hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter capsulatus} PDB: 2w3r_A* 2w54_A* 2w55_A* 1jro_A* 1jrp_A* Back     alignment and structure
>3nvz_B Xanthine dehydrogenase/oxidase; hydroxylase, homodimer, xanthine oxidase, indole-3-aldehyde, oxidoreductase; HET: FAD MTE I3A; 1.60A {Bos taurus} PDB: 3eub_B* 3etr_B* 3ns1_B* 3nrz_B* 3rca_B* 3sr6_B* 3nvw_B* 3nvv_B* 3nvy_B* Back     alignment and structure
>1t3q_C Quinoline 2-oxidoreductase medium subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: d.87.2.1 d.145.1.3 Back     alignment and structure
>3hrd_C Nicotinate dehydrogenase FAD-subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri} Back     alignment and structure
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A* Back     alignment and structure
>1rm6_B 4-hydroxybenzoyl-COA reductase beta subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: d.87.2.1 d.145.1.3 PDB: 1sb3_B* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 515
d1w1oa2206 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Ma 3e-19
d2i0ka2216 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibac 2e-17
d1wvfa2236 d.145.1.1 (A:7-242) Flavoprotein subunit of p-cres 0.004
>d1w1oa2 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Length = 206 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: FAD-linked oxidases, N-terminal domain
domain: Cytokinin dehydrogenase 1
species: Maize (Zea mays) [TaxId: 4577]

 Score = 84.2 bits (207), Expect = 3e-19
 Identities = 35/185 (18%), Positives = 64/185 (34%), Gaps = 8/185 (4%)

Query: 46  FSTPTTPKPQVIVTPVKESHVQAAVKCSQK---YGLQVRVRSGGHDYEGLSYVSN-YHVP 101
           F   T+  P  ++ P     + A +  +     +   +  R  GH   G ++      V 
Sbjct: 22  FGNITSALPAAVLYPSSTGDLVALLSAANSTPGWPYTIAFRGRGHSLMGQAFAPGGVVVN 81

Query: 102 FVIIDFINL-SSVSVDPEAKTAWVQAGATNGKVYHTIAEKSKTLAFPAGVCPTVGVGGLF 160
              +        ++V  + +            V      +             + VGG  
Sbjct: 82  MASLGDAAAPPRINVSADGRYVDAGGEQVWIDVLRASLARGVAPRSW-TDYLYLTVGGTL 140

Query: 161 SGGGYGFLMRKYGLAADNVVDAHLIDVNGRLLD-RKSMGEDLFWAIRGGGGASFGVIIAW 219
           S  G      ++G    NV++  +I  +G ++   K +  DLF A+ GG G  FGVI   
Sbjct: 141 SNAGISGQAFRHGPQISNVLEMDVITGHGEMVTCSKQLNADLFDAVLGGLG-QFGVITRA 199

Query: 220 KIKLV 224
           +I + 
Sbjct: 200 RIAVE 204
>d2i0ka2 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibacterium sterolicum [TaxId: 1702]} Length = 216 Back     information, alignment and structure
>d1wvfa2 d.145.1.1 (A:7-242) Flavoprotein subunit of p-cresol methylhydroxylase {Pseudomonas putida [TaxId: 303]} Length = 236 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query515
d1w1oa2206 Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId 100.0
d1wvfa2236 Flavoprotein subunit of p-cresol methylhydroxylase 100.0
d1e8ga2268 Vanillyl-alcohol oxidase {Fungus (Penicillium simp 99.97
d2i0ka2216 Cholesterol oxidase {Brevibacterium sterolicum [Ta 99.96
d1hska1194 Uridine diphospho-N-Acetylenolpyruvylglucosamine r 99.88
d1uxya1198 Uridine diphospho-N-Acetylenolpyruvylglucosamine r 99.86
d1f0xa2265 D-lactate dehydrogenase {Escherichia coli [TaxId: 99.83
d1ffvc2177 Carbon monoxide (CO) dehydrogenase flavoprotein, N 95.81
d1w1oa1289 Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId 94.01
d1v97a6223 Xanthine oxidase, domain 3 (?) {Cow (Bos taurus) [ 93.79
d1n62c2177 Carbon monoxide (CO) dehydrogenase flavoprotein, N 93.2
d1t3qc2176 Quinoline 2-oxidoreductase medium subunit QorM {Ps 93.0
d1jroa4167 Xanthine dehydrogenase chain A, domain 3 {Rhodobac 92.89
d1rm6b2216 4-hydroxybenzoyl-CoA reductase beta subunit HrcB, 92.46
d1e8ga1287 Vanillyl-alcohol oxidase {Fungus (Penicillium simp 91.54
d1wvfa1279 Flavoprotein subunit of p-cresol methylhydroxylase 80.56
>d1w1oa2 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: FAD-linked oxidases, N-terminal domain
domain: Cytokinin dehydrogenase 1
species: Maize (Zea mays) [TaxId: 4577]

Probab=100.00  E-value=3.1e-37  Score=288.36  Aligned_cols=177  Identities=20%  Similarity=0.306  Sum_probs=159.7

Q ss_pred             ccCCCCCCCCCccEEEecCCHHHHHHHHHHHHhC---CCeEEEEcCCCCCCCCCcccCCCCCEEEEEcCCCCcE------
Q 048392           43 NLRFSTPTTPKPQVIVTPVKESHVQAAVKCSQKY---GLQVRVRSGGHDYEGLSYVSNYHVPFVIIDFINLSSV------  113 (515)
Q Consensus        43 n~r~~~~~~~~p~~vv~p~~~~dv~~~v~~a~~~---~~~~~~~g~Gh~~~~~~~~~~~~~~gvvIdl~~l~~v------  113 (515)
                      ...|.......|.+|++|+|++||+++|++|+++   ++||++||+||++.+.+...+    +|+|||++||+|      
T Consensus        19 ~~d~~~~~~~~P~~Vv~P~s~~ev~~iv~~a~~~~~~~~~v~~rggGhs~~g~s~~~~----~ividl~~l~~i~~~~~~   94 (206)
T d1w1oa2          19 STDFGNITSALPAAVLYPSSTGDLVALLSAANSTPGWPYTIAFRGRGHSLMGQAFAPG----GVVVNMASLGDAAAPPRI   94 (206)
T ss_dssp             SCCTTCSCCCCCSEEECCSSHHHHHHHHHHHHHCTTCCCCEEEESSCCCSSSTTCCTT----SEEEEGGGGGCSSSSCSE
T ss_pred             EECcccCcccCCCEEEEcCCHHHHHHHHHHHHhCCCCCeEEEEECCCCCcccCcccCC----CEeeeccccceeeeceeE
Confidence            3446666778999999999999999999999997   699999999999998877655    899999999985      


Q ss_pred             EEcCCCCEEEEcCCCCHHHHHHHHHHhCCcceecC-CCCCcccchhhhhCCCCCCcccccccccceEeEEEEEecCCcEE
Q 048392          114 SVDPEAKTAWVQAGATNGKVYHTIAEKSKTLAFPA-GVCPTVGVGGLFSGGGYGFLMRKYGLAADNVVDAHLIDVNGRLL  192 (515)
Q Consensus       114 ~~d~~~~~v~v~aG~~~~~l~~~l~~~g~~l~~~~-g~~~~vgigG~~~ggg~g~~~~~~G~~~d~v~~~~vv~~~G~~~  192 (515)
                      ++|++..+++||||+++.+|.++|.++|  +.++. +....++|||++++||+|..+++||+.+|+|+++|+|++||+++
T Consensus        95 ~id~~~~~v~v~aG~~~~~l~~~l~~~G--l~~~~~~~~~~~tvGG~i~~~g~g~~s~~~G~~~d~v~~~evV~~~G~~~  172 (206)
T d1w1oa2          95 NVSADGRYVDAGGEQVWIDVLRASLARG--VAPRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMV  172 (206)
T ss_dssp             EECTTSSEEEEETTCBHHHHHHHHHTTT--EEESCCCSSCCSBHHHHHTTCCCSTTHHHHCCGGGSEEEEEEEETTSCEE
T ss_pred             EEecCCCEEEEEcceehhhhhhhhhccc--cccccCCccCceEEeeeeccccceeccccccceeeeeeEEEEEcCCCcEE
Confidence            7899999999999999999999999984  55554 55577899999999999999999999999999999999999999


Q ss_pred             e-cCCCCcchhhhhhcccCCceeEEEEEEEEEEee
Q 048392          193 D-RKSMGEDLFWAIRGGGGASFGVIIAWKIKLVTV  226 (515)
Q Consensus       193 ~-~~~~~~dL~~a~rg~~~g~~Givt~~~~~l~~~  226 (515)
                      + +..+++||||++||+. |+|||||+++|||+|.
T Consensus       173 ~~s~~~~~dl~~a~~g~~-G~~Giit~~tl~l~PA  206 (206)
T d1w1oa2         173 TCSKQLNADLFDAVLGGL-GQFGVITRARIAVEPA  206 (206)
T ss_dssp             EEESSSSHHHHHHHTTCT-TCSEEEEEEEEEEEEC
T ss_pred             EECCCCCHHHHHHHhhCC-CccEeEEEEEEEEEcC
Confidence            7 6667999999999988 8999999999999984
>d1wvfa2 d.145.1.1 (A:7-242) Flavoprotein subunit of p-cresol methylhydroxylase {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1e8ga2 d.145.1.1 (A:6-273) Vanillyl-alcohol oxidase {Fungus (Penicillium simplicissimum) [TaxId: 69488]} Back     information, alignment and structure
>d2i0ka2 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibacterium sterolicum [TaxId: 1702]} Back     information, alignment and structure
>d1hska1 d.145.1.2 (A:15-208) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1uxya1 d.145.1.2 (A:3-200) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1f0xa2 d.145.1.1 (A:9-273) D-lactate dehydrogenase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ffvc2 d.145.1.3 (C:1-177) Carbon monoxide (CO) dehydrogenase flavoprotein, N-terminal domain {Hydrogenophaga pseudoflava [TaxId: 47421]} Back     information, alignment and structure
>d1w1oa1 d.58.32.4 (A:246-534) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
>d1v97a6 d.145.1.3 (A:192-414) Xanthine oxidase, domain 3 (?) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1n62c2 d.145.1.3 (C:1-177) Carbon monoxide (CO) dehydrogenase flavoprotein, N-terminal domain {Oligotropha carboxidovorans, formerly Pseudomonas carboxydovorans [TaxId: 40137]} Back     information, alignment and structure
>d1t3qc2 d.145.1.3 (C:1-176) Quinoline 2-oxidoreductase medium subunit QorM {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1jroa4 d.145.1.3 (A:179-345) Xanthine dehydrogenase chain A, domain 3 {Rhodobacter capsulatus [TaxId: 1061]} Back     information, alignment and structure
>d1rm6b2 d.145.1.3 (B:1-216) 4-hydroxybenzoyl-CoA reductase beta subunit HrcB, N-terminal domain {Thauera aromatica [TaxId: 59405]} Back     information, alignment and structure
>d1e8ga1 d.58.32.1 (A:274-560) Vanillyl-alcohol oxidase {Fungus (Penicillium simplicissimum) [TaxId: 69488]} Back     information, alignment and structure
>d1wvfa1 d.58.32.1 (A:243-521) Flavoprotein subunit of p-cresol methylhydroxylase {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure