Citrus Sinensis ID: 048402

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------
Protein Sequence
FIHLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNNMSGPLPLISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLSNNKLTGKIPSSTQLQSFDASSFTGNDLCGAPLPKNCAENVSVSEDENGDEDEDEVDHWLYVSIALGFVVGFGCFIGPLIFNRRWRYNYYHFLNRLENIIVGVVRKCS
Secondary Structure (PSIPRED)
cccccEEEccccccccccccccccccccccEEEccccccccccccHHccccccccEEEccccccccccHHHHHHccccccccccEEEcccccccEEccccccccccccEEEcccccccccccccccccccccEEEccccccEEEEccccccccccccEEEccccEEEEEEcccccccccccEEEcccccccccccHHccccccccEEEcccccccccccHHHHHccccccEEEccccccEEEcccccccccccEEEccccccccccccccccccEEEcccccccccccHHHHHcccccccccEEEccccEEEccccccccccccccEEEccccccEEcccccccccccccEEEccccEEEEcccHHccccccccEEEcccccccccccHHHHHccccccEEEccccccEEEccccccccccccEEEcccccccccccHHHHHHHHcccccccccccccccccccccccEEEEEEEEEEccccEEHHHHcccEEEEEcccccccccccHHHHccccccccccccccccccccccccccccccEEccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEHHHHHHHHHHHHHHHccccHHHHHHHHHHHcccEEEEEEEEcc
Secondary Structure Prediction (SSPRO)
cccEEEEEcccccccccccHHHHHccccccEEEccccccccccccHHHcccccccEEEcccccccccccHHHccccHccccccEEEEcccccccccccHHHccccccEEEEcccccccccccHHHcccccccEEEcccccccccccHHHHHccccccEEEcccccccccccHccccccccEEEEEccccccccccHHHHcccccEEEEcccccccccccHHHHHccccccEEEcccccccccccccccccccEEEEcccccccccccHHHccHHHHHHHHccccccccccccHHHcccccccEEEcccccccccccHHHccccccEEEEcccccccccccHHHcccccccEEEcccccccccccHHHccccccEEEEcccccccccccHHHHHHccccEEEEEccccccccccHHHccccccEEEEcccccccccccHHHccccccEEEEccccccccccccHHccccEEEEcccccccccccHHHcccccEEEEEcccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHcccccccEEEcccccccccccccHcccccccEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEcc
Coil and Loop (DISEMBL)
fihleylslrnnklqgtidsealgnltsisrldlslntgpegriprsmaslcnlksinlrgVHLSQEISEILNIFSGCVSIElesldlrsssisghltdqlgqfknldnldlannsivgpipqslghlsnlrVLQIYNNklngtlseihfsnltklswfrvggnkltlevrhdwippfqlvalgfhncyvgsrfpqwlhsqKHLQYLNLLnsgmsdlfpiRFLKSAFQLKFLDLGLNQFHGQITDLTKVTQLLFLSVHsnnmsgplplissnlvyldlsnnsfsgsVSHYLCYRinepksliglklkdnslqgeipdcwmsYQNLEILElsnnkftgklpnslgSLTSLIWLLLgknrlsgtipvslknctalesldvgenefvgniptwtgERFSRMVVLILRsnnfhgplptrLCDLAFLQILDLadnnlfgtipkcinnitgmvaansftrssqqylplpldgdviltekasvvsegeaieYDEILNLVKEtdvsrnnltksiplemtnlkatqslnfshnsftgripesigaMRSLESIDFsvnqlsgeipqsMSNLMslnhlnlsnnkltgkipsstqlqsfdassftgndlcgaplpkncaenvsvsedengdededeVDHWLYVSIALGFVVGfgcfigplifnrrwrYNYYHFLNRLENIIVGVVRKCS
Flexible Loop (DISEMBL)
FIHLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNNMSGPLPLISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVvsegeaieydeilnlvketdvsrnnLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLSNNKLTGKIPSSTQLQSFDASSFTGNDLCGAPLPKNCAENVSVSEDENGDEDEDEVDHWLYVSIALGFVVGFGCFIGPLIFNRRWRYNYYHFLNRLENIIVGVVRKCS
Low Complexity Region (SEG)
FIHLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNNMSGPLPLISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNslgsltsliwlllGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQsmsnlmslnhlnlsnnKLTGKIPSSTQLQSFDASSFTGNDLCGAPLPKNCAENVSVSedengdededevdHWLYVSIALGFVVGFGCFIGPLIFNRRWRYNYYHFLNRLENIIVGVVRKCS
Disordered region (IsUnstruct)
*****YLSL*************LGNLTSISRLDL************SMASLCNLKSINLRGVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNNMSGPLPLISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNL***I**********************************************************************************************************************VDHWLYVSIALGFVVGFGCFIGPLIFNRRWRYNYYHFLNRLENIIVGVVR***
Disordered Region (DISOPRED)
FIHLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNNMSGPLPLISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANS**RSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLSNNKLTGKIPSSTQLQSFDASSFTGNDLCGAP**************************WLYVSIALGFVVGFGCFIGPLIFNRRWRYNYYHFLNRLENIIVGVVRKCS
Disordered Region (DISEMBL)
FIHLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNNMSGPLPLISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLSNNKLTGKIPSSTQLQSFDASSFTGNDLCGAPLPKNCAENV*************EVDHWLYVSIALGFVVGFGCFIGPLIFNRRWRYNYYHFLNRLENIIVGVVRKCS
Disordered Region (DISPRO)
FIHLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNNMSGPLPLISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLSNNKLTGKIPSSTQLQSFDASSFTGNDLCGAPLPKNCAENVSVSEDENGDEDEDEVDHWLYVSIALGFVVGFGCFIGPLIFNRRWRYNYYHFLNRLENIIVGVVRKCS
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
FIHLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNNMSGPLPLISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLSNNKLTGKIPSSTQLQSFDASSFTGNDLCGAPLPKNCAENVSVSEDENGDEDEDEVDHWLYVSIALGFVVGFGCFIGPLIFNRRWRYNYYHFLNRLENIIVGVVRKCS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	677	2.2.26 [Sep-21-2011]
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.836	0.453	0.327	2e-63
Q9C9H7	847	Receptor-like protein 12	no	no	0.923	0.737	0.312	2e-62
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.794	0.429	0.323	3e-61
Q9FL28	1173	LRR receptor-like serine/	no	no	0.821	0.473	0.305	5e-59
C0LGV1	1135	LRR receptor-like serine/	no	no	0.853	0.509	0.312	3e-51
Q42371	976	LRR receptor-like serine/	no	no	0.734	0.509	0.297	4e-51
Q9LVP0	1102	Probable leucine-rich rep	no	no	0.830	0.509	0.298	6e-51
Q9SHI2	1101	Leucine-rich repeat recep	no	no	0.836	0.514	0.288	1e-50
O49318	1124	Probable leucine-rich rep	no	no	0.799	0.481	0.285	4e-49
Q9ZPS9	1143	Serine/threonine-protein	no	no	0.813	0.482	0.302	1e-48

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  244 bits (622), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 214/654 (32%), Positives = 322/654 (49%), Gaps = 88/654 (13%)

Query: 3   HLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGV 62
           +LE L+L NN L G I S+ LG ++ +  L L  N   +G IP+S+A L NL++++L   
Sbjct: 240 NLEILNLANNSLTGEIPSQ-LGEMSQLQYLSLMANQ-LQGLIPKSLADLGNLQTLDLSAN 297

Query: 63  HLSQEISEIL-------------NIFSGCV-------SIELESLDLRSSSISGHLTDQLG 102
           +L+ EI E               N  SG +       +  LE L L  + +SG +  +L 
Sbjct: 298 NLTGEIPEEFWNMSQLLDLVLANNHLSGSLPKSICSNNTNLEQLVLSGTQLSGEIPVELS 357

Query: 103 QFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVG 162
           + ++L  LDL+NNS+ G IP++L  L  L  L ++NN L GTLS    SNLT L W  + 
Sbjct: 358 KCQSLKQLDLSNNSLAGSIPEALFELVELTDLYLHNNTLEGTLSP-SISNLTNLQWLVLY 416

Query: 163 GNKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRF 222
            N L  ++  +     +L  L  +        PQ + +   L+ +++  +      P   
Sbjct: 417 HNNLEGKLPKEISALRKLEVLFLYENRFSGEIPQEIGNCTSLKMIDMFGNHFEGEIPPSI 476

Query: 223 -----------------------LKSAFQLKFLDLGLNQFHGQITD----LTKVTQLLFL 255
                                  L +  QL  LDL  NQ  G I      L  + QL+  
Sbjct: 477 GRLKELNLLHLRQNELVGGLPASLGNCHQLNILDLADNQLSGSIPSSFGFLKGLEQLM-- 534

Query: 256 SVHSNNMSGPLP--LIS-SNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQ 312
            +++N++ G LP  LIS  NL  ++LS+N  +G++ H LC       S +   + +N  +
Sbjct: 535 -LYNNSLQGNLPDSLISLRNLTRINLSHNRLNGTI-HPLCGS----SSYLSFDVTNNGFE 588

Query: 313 GEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTA 372
            EIP    + QNL+ L L  N+ TGK+P +LG +  L  L +  N L+GTIP+ L  C  
Sbjct: 589 DEIPLELGNSQNLDRLRLGKNQLTGKIPWTLGKIRELSLLDMSSNALTGTIPLQLVLCKK 648

Query: 373 LESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNL 432
           L  +D+  N   G IP W G + S++  L L SN F   LPT L +   L +L L  N+L
Sbjct: 649 LTHIDLNNNFLSGPIPPWLG-KLSQLGELKLSSNQFVESLPTELFNCTKLLVLSLDGNSL 707

Query: 433 FGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLV 492
            G+IP+ I N+  +   N         LP  +                        L+ +
Sbjct: 708 NGSIPQEIGNLGALNVLNLDKNQFSGSLPQAMGK----------------------LSKL 745

Query: 493 KETDVSRNNLTKSIPLEMTNLKATQS-LNFSHNSFTGRIPESIGAMRSLESIDFSVNQLS 551
            E  +SRN+LT  IP+E+  L+  QS L+ S+N+FTG IP +IG +  LE++D S NQL+
Sbjct: 746 YELRLSRNSLTGEIPVEIGQLQDLQSALDLSYNNFTGDIPSTIGTLSKLETLDLSHNQLT 805

Query: 552 GEIPQSMSNLMSLNHLNLSNNKLTGKIPSSTQLQSFDASSFTGND-LCGAPLPK 604
           GE+P S+ ++ SL +LN+S N L GK+    Q   + A SF GN  LCG+PL +
Sbjct: 806 GEVPGSVGDMKSLGYLNVSFNNLGGKL--KKQFSRWPADSFLGNTGLCGSPLSR 857

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score =  241 bits (614), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 227/726 (31%), Positives = 338/726 (46%), Gaps = 101/726 (13%)

Query: 3   HLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGV 62
           +L +L L N  L G I S +LGNL+ ++ ++L  N    G IP S+ +L  L+ + L   
Sbjct: 111 YLRHLDLTNCNLYGEIPS-SLGNLSHLTLVNLYFNKF-VGEIPASIGNLNQLRHLILANN 168

Query: 63  HLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIP 122
            L+ EI   L   S  V++EL      S+ + G + D +G  K L NL LA+N+++G IP
Sbjct: 169 VLTGEIPSSLGNLSRLVNLEL-----FSNRLVGKIPDSIGDLKQLRNLSLASNNLIGEIP 223

Query: 123 QSLGHLSNL------------------------RVLQIYNNKLNGTLSEIHFSNLTKLSW 158
            SLG+LSNL                        RV+   NN L+G +  I F+NLTKLS 
Sbjct: 224 SSLGNLSNLVHLVLTHNQLVGEVPASIGNLIELRVMSFENNSLSGNI-PISFANLTKLSI 282

Query: 159 FRVGGNKLTLEVRHDWIPPFQLVALGF-HNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDL 217
           F +  N  T     D      L      +N + G  FP+ L     L+ + L  +  +  
Sbjct: 283 FVLSSNNFTSTFPFDMSIFHNLEYFDVSYNSFSGP-FPKSLLLIPSLESIYLQENQFTG- 340

Query: 218 FPIRFLKSAFQLKFLDL--GLNQFHGQITD-LTKVTQLLFLSVHSNNMSGPLPLISS--- 271
            PI F  ++   K  DL  G N+ HG I + ++++  L  L +  NN +G +P   S   
Sbjct: 341 -PIEFANTSSSTKLQDLILGRNRLHGPIPESISRLLNLEELDISHNNFTGAIPPTISKLV 399

Query: 272 NLVYLDLSNNSFSGSVSHYLCYRIN----------------EPKSLIG-LKLKDNSLQGE 314
           NL++LDLS N+  G V   L +R+N                + ++LI  L L  NS QG 
Sbjct: 400 NLLHLDLSKNNLEGEVPACL-WRLNTMVLSHNSFSSFENTSQEEALIEELDLNSNSFQGP 458

Query: 315 IPDCWMSYQNLEILELSNN-------------------------KFTGKLPNSLGSLTSL 349
           IP       +L  L+LSNN                          F+G LP+     T L
Sbjct: 459 IPYMICKLSSLGFLDLSNNLFSGSIPSCIRNFSGSIKELNLGDNNFSGTLPDIFSKATEL 518

Query: 350 IWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFH 409
           + L +  N+L G  P SL NC ALE ++V  N+     P+W  E    + VL LRSN F+
Sbjct: 519 VSLDVSHNQLEGKFPKSLINCKALELVNVESNKIKDIFPSWL-ESLPSLHVLNLRSNKFY 577

Query: 410 GPLPTRLCDLAF--LQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGD 467
           GPL  R   + F  L+I+D++ NN  GT+P      +      + T    QY+       
Sbjct: 578 GPLYHRHASIGFQSLRIIDISHNNFSGTLPPYY--FSNWKDMTTLTEEMDQYMTEFWRYA 635

Query: 468 VILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFT 527
                +  +V++G  + ++ I    +  D S N +  +IP  +  LK  + LN S N+FT
Sbjct: 636 DSYYHEMEMVNKGVDMSFERIRRDFRAIDFSGNKINGNIPESLGYLKELRVLNLSGNAFT 695

Query: 528 GRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLSNNKLTGKIPSSTQLQSF 587
             IP  +  +  LE++D S N+LSG+IPQ ++ L  L+++N S+N L G +P  TQ Q  
Sbjct: 696 SVIPRFLANLTKLETLDISRNKLSGQIPQDLAALSFLSYMNFSHNLLQGPVPRGTQFQRQ 755

Query: 588 DASSFTGN-------DLCGAPLPKNCAENVSVSEDENGDEDEDEVDHWLYVSIALGFVVG 640
             SSF  N       D+C        A N +    E+  E E+ + +W+  +IA G  V 
Sbjct: 756 KCSSFLDNPGLYGLEDICR----DTGALNPTSQLPEDLSEAEENMFNWVAAAIAYGPGVL 811

Query: 641 FGCFIG 646
            G  IG
Sbjct: 812 CGLVIG 817

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  236 bits (603), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 196/606 (32%), Positives = 304/606 (50%), Gaps = 68/606 (11%)

Query: 3   HLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGV 62
            LE+L L  N+L G++      N TS+ +L LS  T   G IP  +++  +LK ++L   
Sbjct: 313 QLEFLVLAKNRLSGSLPKTICSNNTSLKQLFLS-ETQLSGEIPAEISNCQSLKLLDLSNN 371

Query: 63  HLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIP 122
            L+ +I + L        +EL +L L ++S+ G L+  +    NL    L +N++ G +P
Sbjct: 372 TLTGQIPDSLFQL-----VELTNLYLNNNSLEGTLSSSISNLTNLQEFTLYHNNLEGKVP 426

Query: 123 QSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQLVA 182
           + +G L  L ++ +Y N+ +G +  +   N T+L      GN+L+ E+            
Sbjct: 427 KEIGFLGKLEIMYLYENRFSGEMP-VEIGNCTRLQEIDWYGNRLSGEI------------ 473

Query: 183 LGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQ 242
                       P  +   K L  L+L  + +    P   L +  Q+  +DL  NQ  G 
Sbjct: 474 ------------PSSIGRLKDLTRLHLRENELVGNIPAS-LGNCHQMTVIDLADNQLSGS 520

Query: 243 I-TDLTKVTQLLFLSVHSNNMSGPLP--LIS-SNLVYLDLSNNSFSGSVSHYLCYRINEP 298
           I +    +T L    +++N++ G LP  LI+  NL  ++ S+N F+GS+S  LC      
Sbjct: 521 IPSSFGFLTALELFMIYNNSLQGNLPDSLINLKNLTRINFSSNKFNGSISP-LC----GS 575

Query: 299 KSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNR 358
            S +   + +N  +G+IP       NL+ L L  N+FTG++P + G ++ L  L + +N 
Sbjct: 576 SSYLSFDVTENGFEGDIPLELGKSTNLDRLRLGKNQFTGRIPRTFGKISELSLLDISRNS 635

Query: 359 LSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCD 418
           LSG IPV L  C  L  +D+  N   G IPTW G +   +  L L SN F G LPT +  
Sbjct: 636 LSGIIPVELGLCKKLTHIDLNNNYLSGVIPTWLG-KLPLLGELKLSSNKFVGSLPTEIFS 694

Query: 419 LAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVS 478
           L  +  L L  N+L G+IP+ I N+  + A N     +Q   PLP           S + 
Sbjct: 695 LTNILTLFLDGNSLNGSIPQEIGNLQALNALN--LEENQLSGPLP-----------STIG 741

Query: 479 EGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQS-LNFSHNSFTGRIPESIGAM 537
           +         L+ + E  +SRN LT  IP+E+  L+  QS L+ S+N+FTGRIP +I  +
Sbjct: 742 K---------LSKLFELRLSRNALTGEIPVEIGQLQDLQSALDLSYNNFTGRIPSTISTL 792

Query: 538 RSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLSNNKLTGKIPSSTQLQSFDASSFTGN-D 596
             LES+D S NQL GE+P  + ++ SL +LNLS N L GK+    Q   + A +F GN  
Sbjct: 793 PKLESLDLSHNQLVGEVPGQIGDMKSLGYLNLSYNNLEGKL--KKQFSRWQADAFVGNAG 850

Query: 597 LCGAPL 602
           LCG+PL
Sbjct: 851 LCGSPL 856

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  229 bits (584), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 200/654 (30%), Positives = 306/654 (46%), Gaps = 98/654 (14%)

Query: 1   FIHLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLR 60
            +HL+      N L G+I   ++G L +++ LDLS N    G+IPR   +L NL+S+ L 
Sbjct: 191 LVHLQMFVAAGNHLTGSIPV-SIGTLANLTDLDLSGNQ-LTGKIPRDFGNLLNLQSLVLT 248

Query: 61  GVHLSQEISEILNIFSGCVSIEL-------------------ESLDLRSSSISGHLTDQL 101
              L  +I   +   S  V +EL                   ++L +  + ++  +   L
Sbjct: 249 ENLLEGDIPAEIGNCSSLVQLELYDNQLTGKIPAELGNLVQLQALRIYKNKLTSSIPSSL 308

Query: 102 GQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRV 161
            +   L +L L+ N +VGPI + +G L +L VL +++N   G   +   +NL  L+   V
Sbjct: 309 FRLTQLTHLGLSENHLVGPISEEIGFLESLEVLTLHSNNFTGEFPQ-SITNLRNLTVLTV 367

Query: 162 GGNKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIR 221
           G N ++ E+  D      L  L  H+  +    P  + +   L+ L+L ++ M+   P  
Sbjct: 368 GFNNISGELPADLGLLTNLRNLSAHDNLLTGPIPSSISNCTGLKLLDLSHNQMTGEIPRG 427

Query: 222 FLKSAFQLKFLDLGLNQFHGQI-TDLTKVTQLLFLSVHSNNMSGPL-PLISS--NLVYLD 277
           F      L F+ +G N F G+I  D+   + L  LSV  NN++G L PLI     L  L 
Sbjct: 428 F--GRMNLTFISIGRNHFTGEIPDDIFNCSNLETLSVADNNLTGTLKPLIGKLQKLRILQ 485

Query: 278 LSNNSFSGSV----------------SHYLCYRINEPKS----LIGLKLKDNSLQGEIPD 317
           +S NS +G +                S+    RI    S    L GL++  N L+G IP+
Sbjct: 486 VSYNSLTGPIPREIGNLKDLNILYLHSNGFTGRIPREMSNLTLLQGLRMYSNDLEGPIPE 545

Query: 318 CWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLD 377
                + L +L+LSNNKF+G++P     L SL +L L  N+ +G+IP SLK+ + L + D
Sbjct: 546 EMFDMKLLSVLDLSNNKFSGQIPALFSKLESLTYLSLQGNKFNGSIPASLKSLSLLNTFD 605

Query: 378 VGENEFVGNIPTWTGERFSRMVVLILRSNNF-HGPLPTRLCDLAFLQILDLADNNLFGTI 436
           + +N   G IP         M + +  SNN   G +P  L  L  +Q +DL++N   G+I
Sbjct: 606 ISDNLLTGTIPGELLASLKNMQLYLNFSNNLLTGTIPKELGKLEMVQEIDLSNNLFSGSI 665

Query: 437 PKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETD 496
           P+ +         N FT                                          D
Sbjct: 666 PRSLQ-----ACKNVFT-----------------------------------------LD 679

Query: 497 VSRNNLTKSIPLEM-TNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIP 555
            S+NNL+  IP E+   +    SLN S NSF+G IP+S G M  L S+D S N L+GEIP
Sbjct: 680 FSQNNLSGHIPDEVFQGMDMIISLNLSRNSFSGEIPQSFGNMTHLVSLDLSSNNLTGEIP 739

Query: 556 QSMSNLMSLNHLNLSNNKLTGKIPSSTQLQSFDASSFTGN-DLCGAPLP-KNCA 607
           +S++NL +L HL L++N L G +P S   ++ +AS   GN DLCG+  P K C 
Sbjct: 740 ESLANLSTLKHLKLASNNLKGHVPESGVFKNINASDLMGNTDLCGSKKPLKPCT 793

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGV1|RCH1_ARATH LRR receptor-like serine/threonine-protein kinase RCH1 OS=Arabidopsis thaliana GN=RCH1 PE=2 SV=1

 Score =  204 bits (518), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 191/612 (31%), Positives = 314/612 (51%), Gaps = 34/612 (5%)

Query: 1   FIHLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLR 60
           F  L+ L + N  L G I SE +G+ + +  +DLS N+   G IP S+  L NL+ + L 
Sbjct: 105 FTSLQKLVISNTNLTGAISSE-IGDCSELIVIDLSSNS-LVGEIPSSLGKLKNLQELCLN 162

Query: 61  GVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNS-IVG 119
              L+ +I   L     CVS  L++L++  + +S +L  +LG+   L+++    NS + G
Sbjct: 163 SNGLTGKIPPEL---GDCVS--LKNLEIFDNYLSENLPLELGKISTLESIRAGGNSELSG 217

Query: 120 PIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQ 179
            IP+ +G+  NL+VL +   K++G+L  +    L+KL    V    L+ E+  +     +
Sbjct: 218 KIPEEIGNCRNLKVLGLAATKISGSL-PVSLGQLSKLQSLSVYSTMLSGEIPKELGNCSE 276

Query: 180 LVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFP--IRFLKSAFQLKFLDLGLN 237
           L+ L  ++  +    P+ L   ++L+ + L  + +    P  I F+KS   L  +DL +N
Sbjct: 277 LINLFLYDNDLSGTLPKELGKLQNLEKMLLWQNNLHGPIPEEIGFMKS---LNAIDLSMN 333

Query: 238 QFHGQI-TDLTKVTQLLFLSVHSNNMSGPLPLISSN---LVYLDLSNNSFSGSVSHYLCY 293
            F G I      ++ L  L + SNN++G +P I SN   LV   +  N  SG +   +  
Sbjct: 334 YFSGTIPKSFGNLSNLQELMLSSNNITGSIPSILSNCTKLVQFQIDANQISGLIPPEIGL 393

Query: 294 RINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLL 353
            + E    +G +   N L+G IPD     QNL+ L+LS N  TG LP  L  L +L  LL
Sbjct: 394 -LKELNIFLGWQ---NKLEGNIPDELAGCQNLQALDLSQNYLTGSLPAGLFQLRNLTKLL 449

Query: 354 LGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLP 413
           L  N +SG IP+ + NCT+L  L +  N   G IP   G     +  L L  NN  GP+P
Sbjct: 450 LISNAISGVIPLEIGNCTSLVRLRLVNNRITGEIPKGIG-FLQNLSFLDLSENNLSGPVP 508

Query: 414 TRLCDLAFLQILDLADNNLFGTIPKCINNITGM----VAANSFTRSSQQYLPLPLDGDVI 469
             + +   LQ+L+L++N L G +P  ++++T +    V++N  T      L   +  + +
Sbjct: 509 LEISNCRQLQMLNLSNNTLQGYLPLSLSSLTKLQVLDVSSNDLTGKIPDSLGHLISLNRL 568

Query: 470 LTEKASVVSE-GEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQ-SLNFSHNSFT 527
           +  K S   E   ++ +   L L+   D+S NN++ +IP E+ +++    +LN S NS  
Sbjct: 569 ILSKNSFNGEIPSSLGHCTNLQLL---DLSSNNISGTIPEELFDIQDLDIALNLSWNSLD 625

Query: 528 GRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLSNNKLTGKIPSSTQLQSF 587
           G IPE I A+  L  +D S N LSG++  ++S L +L  LN+S+N+ +G +P S   +  
Sbjct: 626 GFIPERISALNRLSVLDISHNMLSGDL-SALSGLENLVSLNISHNRFSGYLPDSKVFRQL 684

Query: 588 DASSFTGND-LC 598
             +   GN+ LC
Sbjct: 685 IGAEMEGNNGLC 696

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q42371|ERECT_ARATH LRR receptor-like serine/threonine-protein kinase ERECTA OS=Arabidopsis thaliana GN=ERECTA PE=1 SV=1

 Score =  203 bits (516), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 175/588 (29%), Positives = 272/588 (46%), Gaps = 91/588 (15%)

Query: 25  NLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVSIELE 84
           N+ +++  DL+L    +G I  ++  L +L SI+LRG  LS +I + +     C S  L+
Sbjct: 69  NVVALNLSDLNL----DGEISPAIGDLKSLLSIDLRGNRLSGQIPDEI---GDCSS--LQ 119

Query: 85  SLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGT 144
           +LDL  + +SG +   + + K L+ L L NN ++GPIP +L  + NL++L +  NKL+G 
Sbjct: 120 NLDLSFNELSGDIPFSISKLKQLEQLILKNNQLIGPIPSTLSQIPNLKILDLAQNKLSGE 179

Query: 145 LSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHL 204
           +  + + N   L +  + GN L   +  D     QL  L             W       
Sbjct: 180 IPRLIYWN-EVLQYLGLRGNNLVGNISPDLC---QLTGL-------------W------- 215

Query: 205 QYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNNMSG 264
            Y ++ N+ ++   P   + +    + LDL  NQ  G+I       Q+  LS+  N +SG
Sbjct: 216 -YFDVRNNSLTGSIP-ETIGNCTAFQVLDLSYNQLTGEIPFDIGFLQVATLSLQGNQLSG 273

Query: 265 PLPLI---SSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMS 321
            +P +      L  LDLS N  SGS+   L       K    L L  N L G IP    +
Sbjct: 274 KIPSVIGLMQALAVLDLSGNLLSGSIPPILGNLTFTEK----LYLHSNKLTGSIPPELGN 329

Query: 322 YQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGEN 381
              L  LEL++N  TG +P  LG LT L  L +  N L G IP  L +CT L SL+V  N
Sbjct: 330 MSKLHYLELNDNHLTGHIPPELGKLTDLFDLNVANNDLEGPIPDHLSSCTNLNSLNVHGN 389

Query: 382 EFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCIN 441
           +F G IP    ++   M  L L SNN  GP+P  L  +  L  LDL++N + G IP  + 
Sbjct: 390 KFSGTIPR-AFQKLESMTYLNLSSNNIKGPIPVELSRIGNLDTLDLSNNKINGIIPSSLG 448

Query: 442 NITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNN 501
           ++  ++  N                                              +SRN+
Sbjct: 449 DLEHLLKMN----------------------------------------------LSRNH 462

Query: 502 LTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNL 561
           +T  +P +  NL++   ++ S+N  +G IPE +  ++++  +    N L+G +  S++N 
Sbjct: 463 ITGVVPGDFGNLRSIMEIDLSNNDISGPIPEELNQLQNIILLRLENNNLTGNV-GSLANC 521

Query: 562 MSLNHLNLSNNKLTGKIPSSTQLQSFDASSFTGN-DLCGAPLPKNCAE 608
           +SL  LN+S+N L G IP +     F   SF GN  LCG+ L   C +
Sbjct: 522 LSLTVLNVSHNNLVGDIPKNNNFSRFSPDSFIGNPGLCGSWLNSPCHD 569

Receptor kinase that, together with ERL1 and ERL2, regulates aerial architecture, including inflorescence (e.g. shoot apical meristem-originating organ shape, elongation of the internode and pedicels, and adaxial-abaxial polarity), and stomatal patterning (e.g. density and clustering), probably by tuning cell division and expansion. Modulates plant transpiration efficiency by controlling stomatal density, leaf photosynthetic capacity, epidermal cell expansion, mesophyll cell proliferation and cell-cell contact. Probable major trait regulating canalization (maintenance of phenotype despite varying environment) in many aspect of the plant physiology (e.g. plant morphology, light-dependent leaves number, branch number, flowering time, phytate and mineral concentrations) by transducing microenvironmental variation into phenotypic differentiation (ecological amplifier). May maintain development integrity in heat stress conditions. Regulates cell wall composition and structure. Confers resistance to the pathogenic bacteria Ralstonia solanacearum and to the necrotrophic fungi Plectosphaerella cucumerina and Pythium irregulare, and required for callose deposition upon infection. Resistance to P.cucumerina seems cell wall-mediated.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LVP0|Y5639_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana GN=At5g63930 PE=1 SV=1

 Score =  202 bits (514), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 182/609 (29%), Positives = 292/609 (47%), Gaps = 47/609 (7%)

Query: 1   FIHLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLR 60
            + LE L + NN++ G++  E +GNL S+S+L ++ +    G++PRS+ +L  L S    
Sbjct: 144 LVSLENLIIYNNRISGSLPVE-IGNLLSLSQL-VTYSNNISGQLPRSIGNLKRLTSFRAG 201

Query: 61  GVHLSQEI-SEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVG 119
              +S  + SEI     GC S+ +  L L  + +SG L  ++G  K L  + L  N   G
Sbjct: 202 QNMISGSLPSEI----GGCESLVM--LGLAQNQLSGELPKEIGMLKKLSQVILWENEFSG 255

Query: 120 PIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQ 179
            IP+ + + ++L  L +Y N+L G + +    +L  L +  +  N L   +  +      
Sbjct: 256 FIPREISNCTSLETLALYKNQLVGPIPK-ELGDLQSLEFLYLYRNGLNGTIPREIGNLSY 314

Query: 180 LVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQF 239
            + + F    +    P  L + + L+ L L  + ++   P+  L +   L  LDL +N  
Sbjct: 315 AIEIDFSENALTGEIPLELGNIEGLELLYLFENQLTGTIPVE-LSTLKNLSKLDLSINAL 373

Query: 240 HGQIT-DLTKVTQLLFLSVHSNNMSGPLPLI---SSNLVYLDLSNNSFSGSVSHYLCYRI 295
            G I      +  L  L +  N++SG +P      S+L  LD+S+N  SG +  YLC   
Sbjct: 374 TGPIPLGFQYLRGLFMLQLFQNSLSGTIPPKLGWYSDLWVLDMSDNHLSGRIPSYLCLHS 433

Query: 296 NEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLG 355
           N    +I L L  N+L G IP    + + L  L L+ N   G+ P++L    ++  + LG
Sbjct: 434 N----MIILNLGTNNLSGNIPTGITTCKTLVQLRLARNNLVGRFPSNLCKQVNVTAIELG 489

Query: 356 KNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTR 415
           +NR  G+IP  + NC+AL+ L + +N F G +P   G   S++  L + SN   G +P+ 
Sbjct: 490 QNRFRGSIPREVGNCSALQRLQLADNGFTGELPREIG-MLSQLGTLNISSNKLTGEVPSE 548

Query: 416 LCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKAS 475
           + +   LQ LD+  NN  GT+P  + ++  +        +    +P+ L           
Sbjct: 549 IFNCKMLQRLDMCCNNFSGTLPSEVGSLYQLELLKLSNNNLSGTIPVALGN--------- 599

Query: 476 VVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQ-SLNFSHNSFTGRIPESI 534
                        L+ + E  +  N    SIP E+ +L   Q +LN S+N  TG IP  +
Sbjct: 600 -------------LSRLTELQMGGNLFNGSIPRELGSLTGLQIALNLSYNKLTGEIPPEL 646

Query: 535 GAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLSNNKLTGKIPSSTQLQSFDASSFTG 594
             +  LE +  + N LSGEIP S +NL SL   N S N LTG IP    L++   SSF G
Sbjct: 647 SNLVMLEFLLLNNNNLSGEIPSSFANLSSLLGYNFSYNSLTGPIP---LLRNISMSSFIG 703

Query: 595 ND-LCGAPL 602
           N+ LCG PL
Sbjct: 704 NEGLCGPPL 712

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SHI2|Y1723_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS=Arabidopsis thaliana GN=At1g17230 PE=2 SV=2

 Score =  202 bits (513), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 189/655 (28%), Positives = 303/655 (46%), Gaps = 89/655 (13%)

Query: 22  ALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVSI 81
           A  +L +++ +DL+      G +   +  L  L+ +N+    +S  I + L++   C S+
Sbjct: 62  ACTHLRTVTSVDLN-GMNLSGTLSPLICKLHGLRKLNVSTNFISGPIPQDLSL---CRSL 117

Query: 82  ELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKL 141
           E+  LDL ++   G +  QL     L  L L  N + G IP+ +G+LS+L+ L IY+N L
Sbjct: 118 EV--LDLCTNRFHGVIPIQLTMIITLKKLYLCENYLFGSIPRQIGNLSSLQELVIYSNNL 175

Query: 142 NGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQ 201
            G +     + L +L   R G N  +  +  +      L  LG     +    P+ L   
Sbjct: 176 TGVIPP-SMAKLRQLRIIRAGRNGFSGVIPSEISGCESLKVLGLAENLLEGSLPKQLEKL 234

Query: 202 KHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQI-TDLTKVTQLLFLSVHSN 260
           ++L  L L  + +S   P   + +  +L+ L L  N F G I  ++ K+T++  L +++N
Sbjct: 235 QNLTDLILWQNRLSGEIPPS-VGNISRLEVLALHENYFTGSIPREIGKLTKMKRLYLYTN 293

Query: 261 NMSGPLPLISSNLV---YLDLSNNSFSGSVSHYLCYRINE--------------PKSL-- 301
            ++G +P    NL+    +D S N  +G +     + +N               P+ L  
Sbjct: 294 QLTGEIPREIGNLIDAAEIDFSENQLTGFIPKEFGHILNLKLLHLFENILLGPIPRELGE 353

Query: 302 ----------------------------IGLKLKDNSLQGEIPDCWMSYQNLEILELSNN 333
                                       + L+L DN L+G+IP     Y N  +L++S N
Sbjct: 354 LTLLEKLDLSINRLNGTIPQELQFLPYLVDLQLFDNQLEGKIPPLIGFYSNFSVLDMSAN 413

Query: 334 KFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGE 393
             +G +P       +LI L LG N+LSG IP  LK C +L  L +G+N+  G++P    E
Sbjct: 414 SLSGPIPAHFCRFQTLILLSLGSNKLSGNIPRDLKTCKSLTKLMLGDNQLTGSLPI---E 470

Query: 394 RFS--RMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANS 451
            F+   +  L L  N   G +   L  L  L+ L LA+NN  G IP  I N+T +V  N 
Sbjct: 471 LFNLQNLTALELHQNWLSGNISADLGKLKNLERLRLANNNFTGEIPPEIGNLTKIVGFNI 530

Query: 452 FTRSSQQYLPLPLDGDVILTE--------KASVVSEGEAIEYDEILNL------------ 491
            +     ++P  L   V +             +  E   + Y EIL L            
Sbjct: 531 SSNQLTGHIPKELGSCVTIQRLDLSGNKFSGYIAQELGQLVYLEILRLSDNRLTGEIPHS 590

Query: 492 ------VKETDVSRNNLTKSIPLEMTNLKATQ-SLNFSHNSFTGRIPESIGAMRSLESID 544
                 + E  +  N L+++IP+E+  L + Q SLN SHN+ +G IP+S+G ++ LE + 
Sbjct: 591 FGDLTRLMELQLGGNLLSENIPVELGKLTSLQISLNISHNNLSGTIPDSLGNLQMLEILY 650

Query: 545 FSVNQLSGEIPQSMSNLMSLNHLNLSNNKLTGKIPSSTQLQSFDASSFTGN-DLC 598
            + N+LSGEIP S+ NLMSL   N+SNN L G +P +   Q  D+S+F GN  LC
Sbjct: 651 LNDNKLSGEIPASIGNLMSLLICNISNNNLVGTVPDTAVFQRMDSSNFAGNHGLC 705

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O49318|Y2317_ARATH Probable leucine-rich repeat receptor-like protein kinase At2g33170 OS=Arabidopsis thaliana GN=At2g33170 PE=2 SV=1

 Score =  196 bits (499), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 175/612 (28%), Positives = 285/612 (46%), Gaps = 71/612 (11%)

Query: 3   HLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGV 62
           +LE L    N L G +   +LGNL  ++      N    G IP  +    NLK + L   
Sbjct: 182 NLEELVAYTNNLTGPL-PRSLGNLNKLTTFRAGQNDF-SGNIPTEIGKCLNLKLLGLAQN 239

Query: 63  HLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIP 122
            +S E+ + + +      ++L+ + L  +  SG +   +G   +L+ L L  NS+VGPIP
Sbjct: 240 FISGELPKEIGML-----VKLQEVILWQNKFSGFIPKDIGNLTSLETLALYGNSLVGPIP 294

Query: 123 QSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQLVA 182
             +G++ +L+ L +Y N+LNGT+ +     L KLS                     +++ 
Sbjct: 295 SEIGNMKSLKKLYLYQNQLNGTIPK----ELGKLS---------------------KVME 329

Query: 183 LGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQ 242
           + F    +    P  L     L+ L L  + ++ + P   L     L  LDL +N   G 
Sbjct: 330 IDFSENLLSGEIPVELSKISELRLLYLFQNKLTGIIPNE-LSKLRNLAKLDLSINSLTGP 388

Query: 243 ITD-LTKVTQLLFLSVHSNNMSGPLPL---ISSNLVYLDLSNNSFSGSVSHYLCYRINEP 298
           I      +T +  L +  N++SG +P    + S L  +D S N  SG +  ++C + N  
Sbjct: 389 IPPGFQNLTSMRQLQLFHNSLSGVIPQGLGLYSPLWVVDFSENQLSGKIPPFICQQSN-- 446

Query: 299 KSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNR 358
             LI L L  N + G IP   +  ++L  L +  N+ TG+ P  L  L +L  + L +NR
Sbjct: 447 --LILLNLGSNRIFGNIPPGVLRCKSLLQLRVVGNRLTGQFPTELCKLVNLSAIELDQNR 504

Query: 359 LSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCD 418
            SG +P  +  C  L+ L +  N+F  N+P     + S +V   + SN+  GP+P+ + +
Sbjct: 505 FSGPLPPEIGTCQKLQRLHLAANQFSSNLPNEI-SKLSNLVTFNVSSNSLTGPIPSEIAN 563

Query: 419 LAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVS 478
              LQ LDL+ N+  G++P  + ++  +       R S+        G++  T       
Sbjct: 564 CKMLQRLDLSRNSFIGSLPPELGSLHQL----EILRLSENRF----SGNIPFT------- 608

Query: 479 EGEAIEYDEILNL--VKETDVSRNNLTKSIPLEMTNLKATQ-SLNFSHNSFTGRIPESIG 535
                    I NL  + E  +  N  + SIP ++  L + Q ++N S+N F+G IP  IG
Sbjct: 609 ---------IGNLTHLTELQMGGNLFSGSIPPQLGLLSSLQIAMNLSYNDFSGEIPPEIG 659

Query: 536 AMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLSNNKLTGKIPSSTQLQSFDASSFTGN 595
            +  L  +  + N LSGEIP +  NL SL   N S N LTG++P +   Q+   +SF GN
Sbjct: 660 NLHLLMYLSLNNNHLSGEIPTTFENLSSLLGCNFSYNNLTGQLPHTQIFQNMTLTSFLGN 719

Query: 596 D-LCGAPLPKNC 606
             LCG  L ++C
Sbjct: 720 KGLCGGHL-RSC 730

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZPS9|BRL2_ARATH Serine/threonine-protein kinase BRI1-like 2 OS=Arabidopsis thaliana GN=BRL2 PE=1 SV=1

 Score =  195 bits (496), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 190/628 (30%), Positives = 297/628 (47%), Gaps = 77/628 (12%)

Query: 14  LQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSM-ASLCNLKSINLRGVHLSQEISEIL 72
           L GT+        +++  + LS N    G++P  +  S   L++++L   +++  IS + 
Sbjct: 139 LIGTLPENFFSKYSNLISITLSYNNF-TGKLPNDLFLSSKKLQTLDLSYNNITGPISGLT 197

Query: 73  NIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLR 132
              S CVS+    LD   +SISG+++D L    NL +L+L+ N+  G IP+S G L  L+
Sbjct: 198 IPLSSCVSMTY--LDFSGNSISGYISDSLINCTNLKSLNLSYNNFDGQIPKSFGELKLLQ 255

Query: 133 VLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPP--------FQLVALG 184
            L + +N+L G                              WIPP         Q + L 
Sbjct: 256 SLDLSHNRLTG------------------------------WIPPEIGDTCRSLQNLRLS 285

Query: 185 FHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQI- 243
           ++N + G   P+ L S   LQ L+L N+ +S  FP   L+S   L+ L L  N   G   
Sbjct: 286 YNN-FTGV-IPESLSSCSWLQSLDLSNNNISGPFPNTILRSFGSLQILLLSNNLISGDFP 343

Query: 244 TDLTKVTQLLFLSVHSNNMSGPLPLI----SSNLVYLDLSNNSFSGSVSHYLCYRINEPK 299
           T ++    L      SN  SG +P      +++L  L L +N  +G +       I++  
Sbjct: 344 TSISACKSLRIADFSSNRFSGVIPPDLCPGAASLEELRLPDNLVTGEIPPA----ISQCS 399

Query: 300 SLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRL 359
            L  + L  N L G IP    + Q LE      N   G++P  +G L +L  L+L  N+L
Sbjct: 400 ELRTIDLSLNYLNGTIPPEIGNLQKLEQFIAWYNNIAGEIPPEIGKLQNLKDLILNNNQL 459

Query: 360 SGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDL 419
           +G IP    NC+ +E +    N   G +P   G   SR+ VL L +NNF G +P  L   
Sbjct: 460 TGEIPPEFFNCSNIEWVSFTSNRLTGEVPKDFG-ILSRLAVLQLGNNNFTGEIPPELGKC 518

Query: 420 AFLQILDLADNNLFGTIPKCINN------ITGMVAAN--SFTRS---SQQYLPLPLDGDV 468
             L  LDL  N+L G IP  +        ++G+++ N  +F R+   S + +   ++   
Sbjct: 519 TTLVWLDLNTNHLTGEIPPRLGRQPGSKALSGLLSGNTMAFVRNVGNSCKGVGGLVEFSG 578

Query: 469 ILTEKASVVSEGEAIEYDE-----ILNL------VKETDVSRNNLTKSIPLEMTNLKATQ 517
           I  E+   +   ++ ++       IL+L      ++  D+S N L   IP E+  + A Q
Sbjct: 579 IRPERLLQIPSLKSCDFTRMYSGPILSLFTRYQTIEYLDLSYNQLRGKIPDEIGEMIALQ 638

Query: 518 SLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLSNNKLTGK 577
            L  SHN  +G IP +IG +++L   D S N+L G+IP+S SNL  L  ++LSNN+LTG 
Sbjct: 639 VLELSHNQLSGEIPFTIGQLKNLGVFDASDNRLQGQIPESFSNLSFLVQIDLSNNELTGP 698

Query: 578 IPSSTQLQSFDASSFTGN-DLCGAPLPK 604
           IP   QL +  A+ +  N  LCG PLP+
Sbjct: 699 IPQRGQLSTLPATQYANNPGLCGVPLPE 726

Receptor with a serine/threonine-protein kinase activity, which may transduce extracellular spatial and temporal signals into downstream cell differentiation responses in provascular and procambial cells. In contrast to BRI1, BRL1 and BRL3, it does not bind brassinolide.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	677
224072885	1024	predicted protein [Populus trichocarpa]	0.973	0.643	0.490	1e-169
255543977	1075	serine/threonine-protein kinase bri1, pu	0.977	0.615	0.448	1e-161
255581850	1082	leucine-rich repeat receptor protein kin	0.970	0.607	0.457	1e-157
315436720	1020	verticillium wilt resistance-like protei	0.970	0.644	0.463	1e-155
356561588	1074	PREDICTED: LRR receptor-like serine/thre	0.964	0.608	0.426	1e-144
356561552	1019	PREDICTED: LRR receptor-like serine/thre	0.966	0.641	0.436	1e-143
255539443	1054	serine-threonine protein kinase, plant-t	0.970	0.623	0.430	1e-143
356561661	1020	PREDICTED: LRR receptor-like serine/thre	0.960	0.637	0.432	1e-143
209970607	1045	M18S-3Ap [Malus floribunda]	0.945	0.612	0.448	1e-143
356561667	1018	PREDICTED: leucine-rich repeat receptor	0.961	0.639	0.429	1e-143

>gi|224072885|ref|XP_002303927.1| predicted protein [Populus trichocarpa] gi|222841359|gb|EEE78906.1| predicted protein [Populus trichocarpa]

 Score =  600 bits (1547), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 344/701 (49%), Positives = 454/701 (64%), Gaps = 42/701 (5%)

Query: 1    FIHLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLN--TGPEGRIPRSMASLCNLKSIN 58
            F HL+ L+L +N LQG + S A+GN+TS+  LDLSLN     EG IP S   LCNL++++
Sbjct: 329  FEHLKLLNLGSNNLQGVL-SSAIGNMTSLISLDLSLNHELKFEGGIPGSFKKLCNLRTLS 387

Query: 59   LRGVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIV 118
            L  V L+Q+I+E+L +  GCVS E+ESLDL    + G LT+ LG+F+NL  L L +NSI 
Sbjct: 388  LSNVKLNQDIAEVLEVLLGCVSEEVESLDLAGCLLFGQLTNHLGKFRNLAYLGLRSNSIS 447

Query: 119  GPIPQSLGHLSNLRVLQIYNNKLNGTL------------------------SEIHFSNLT 154
            GPIP +LG L +LR L + +NKLNGTL                        SE+HF+NL 
Sbjct: 448  GPIPMALGELVSLRSLVLSDNKLNGTLPKSFGELTKLEEMDISHNLFQGEVSEVHFANLK 507

Query: 155  KLSWFRVGGNKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGM 214
             L  F   GN+L L V  DWIPP QLV +   +  VG +FP+W+   +HL YL++ NS +
Sbjct: 508  NLRNFSAAGNQLNLRVSPDWIPP-QLVFIDLRSWNVGPQFPKWVRPLEHLSYLDISNSSI 566

Query: 215  SDLFPIRFLKSAFQLKFLDLGLNQFHGQIT-----DLTKVTQLLFLSVHSNNMSGPLPLI 269
            S   PI F   +F++++L+L  NQ  G I      D T    L+ LS  SN   GPLP I
Sbjct: 567  SSTIPIWFWTMSFRMEYLNLSHNQIQGVIPSKLKLDFTASYPLVDLS--SNQFKGPLPSI 624

Query: 270  SSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILE 329
             SN+  LDLSNNSFSGS+ ++LC++I+E K++  L L +N L G IPDCW S+Q L  ++
Sbjct: 625  FSNVGALDLSNNSFSGSMLNFLCHKIDELKNMQVLNLGENLLSGVIPDCWSSWQYLVAIK 684

Query: 330  LSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPT 389
            LSNNK +G +P+S+G+L+ L  L +  + LSG +P+SLKNCT L +LDV ENE VG++P 
Sbjct: 685  LSNNKLSGNIPDSIGALSLLESLHIRNSSLSGKLPISLKNCTKLITLDVAENELVGSMPA 744

Query: 390  WTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAA 449
            W G+RFS MVVL +R+N FHG +P  LC+LA LQILDLA N L  +IP C N ++ M   
Sbjct: 745  WIGKRFSSMVVLNMRANKFHGRIPRELCNLASLQILDLAHNRLSWSIPTCFNKLSAMATR 804

Query: 450  NSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLE 509
            N           + LD      +   +V +G+ +EY  IL  V+  D+S N L   IP E
Sbjct: 805  N------DSLGKIYLDSGSSTFDNVLLVMKGKVVEYSTILKFVRSIDLSSNALCGEIPEE 858

Query: 510  MTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNL 569
            +T L   QSLN S NS TGRIPE IG++R LES+DFSVNQLSGEIPQSMS+L  L+HLNL
Sbjct: 859  VTRLSELQSLNLSQNSLTGRIPEGIGSLRYLESMDFSVNQLSGEIPQSMSDLTFLSHLNL 918

Query: 570  SNNKLTGKIPSSTQLQSFDASSFTGNDLCGAPLPKNCAENVSVSEDENGDEDEDEVD-HW 628
            S+N+L G+IPS TQLQSF  SSF+GN+LCG PL KNC+ +     +   +ED + +   W
Sbjct: 919  SDNRLRGRIPSGTQLQSFGPSSFSGNELCGPPLSKNCSVDNKFHVEHEREEDGNGLKGRW 978

Query: 629  LYVSIALGFVVGFGCFIGPLIFNRRWRYNYYHFLNRLENII 669
             YVS+ LGF+VGF   +GPL+FNRRWRY YYHFL+RL + I
Sbjct: 979  FYVSMVLGFIVGFWGVVGPLMFNRRWRYVYYHFLDRLRDQI 1019

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255543977|ref|XP_002513051.1| serine/threonine-protein kinase bri1, putative [Ricinus communis] gi|223548062|gb|EEF49554.1| serine/threonine-protein kinase bri1, putative [Ricinus communis]

 Score =  575 bits (1482), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 342/762 (44%), Positives = 447/762 (58%), Gaps = 100/762 (13%)

Query: 1    FIHLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLR 60
            F +LE+LSL +N+LQG I S  +GN+TS+  LDLS N    G IP S   LCNL+S+ L 
Sbjct: 316  FTNLEFLSLNSNRLQGNI-SSLIGNMTSLITLDLSSNLAISGGIPTSFKHLCNLRSLVLD 374

Query: 61   GVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNS---- 116
             V LSQ+I+++L I SGC+S ELES  + S  +SG+LTD LG FKNL +LDL+ NS    
Sbjct: 375  TVTLSQKINDVLEILSGCISDELESFSMYSCQLSGYLTDDLGHFKNLASLDLSYNSISGP 434

Query: 117  -------------------------------------------------IVGPIPQSLGH 127
                                                             + GPIP SLG 
Sbjct: 435  IPKSLRHLCNLRSLDLSGNRWSQEINDVLEILSDCPTNVLESLSLSDCELSGPIPSSLGE 494

Query: 128  LSNLRVLQIYNNKLNGTL------------------------SEIHFSNLTKLSWF--RV 161
            +++L  L + +NKLNGTL                        +E+HF+NLTKL  F   +
Sbjct: 495  MASLIRLSLSSNKLNGTLPESFGQLTRLEIAFFDGNLLEGEVTEVHFANLTKLFIFDGSM 554

Query: 162  GGNKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIR 221
              N   L V  +W PPFQL  L   +  +G +FP WLHS ++L+ L+L NSG+S   P+ 
Sbjct: 555  MANGPVLRVGSNWTPPFQLHYLSLRSWKIGPQFPAWLHSLRYLEILDLSNSGISSTIPVW 614

Query: 222  FLKSAFQLKFLDLGLNQFHGQITDLTKVT---QLLFLSVHSNNMSGPLPLISSNLVYLDL 278
            F   +    + +L  NQ HG I ++  V+   ++    + SNN  GP+P  SSNL  LDL
Sbjct: 615  FWDMSSNFAYANLSHNQIHGVIPNVPVVSNDYRITMFDMSSNNFRGPVPYFSSNLSALDL 674

Query: 279  SNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGK 338
            S+NSF+GS+ ++LCY++ E K +  L L  N L GEIPDCW+S+Q+L  + LSNNKFTG 
Sbjct: 675  SSNSFTGSIINFLCYKMQEVKKMEVLNLGGNLLSGEIPDCWLSWQSLTAINLSNNKFTGN 734

Query: 339  LPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRM 398
            +P S+G+L+ L  +    N LSG IP+S++NC  L +LD   N+ VG IP+W G+    M
Sbjct: 735  IPKSIGTLSFLESVHFANNDLSGDIPLSIQNCRKLFTLDFSGNKLVGKIPSWIGKSIPDM 794

Query: 399  VVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAAN----SFTR 454
            ++LILR N  HG +P  +C +A LQILDLADNN    IP C +N +GMV  N    S T 
Sbjct: 795  IILILRGNKLHGQIPEEICRMASLQILDLADNNFSSMIPSCFSNFSGMVKVNDSFGSLTF 854

Query: 455  SSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLK 514
                  P P     IL + A +V +G   EY  IL  VK  D+S NNL+  IP+ +T+L 
Sbjct: 855  DQSNVGPSP-----ILIDSAILVIKGRVAEYSTILGFVKAIDLSNNNLSGEIPMNITSLV 909

Query: 515  ATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLSNNKL 574
              QSL+FS NS TGRIP+ IGAM+SLESIDFS N L GEIP+S+S+L  L+HLNLSNNKL
Sbjct: 910  GLQSLSFSQNSLTGRIPKDIGAMQSLESIDFSQNHLFGEIPESISSLTFLSHLNLSNNKL 969

Query: 575  TGKIPSSTQLQSFDASSFTGNDLCGAPLPKNCAEN-----VSVSEDENGDEDEDEVDHWL 629
            TGKIPS TQL+ FD SSF  NDLCG PLP NC++          ++   DE+  EVD W 
Sbjct: 970  TGKIPSGTQLRGFDPSSFMDNDLCGPPLPLNCSKEGILHAPDDEKEREEDENGFEVD-WF 1028

Query: 630  Y--VSIALGFVVGFGCFIGPLIFNRRWRYNYYHFLNRLENII 669
            Y  VSIA GFVVGF   +GPL FNRRWR+ Y+ FL  L + I
Sbjct: 1029 YFFVSIAPGFVVGFWLVVGPLCFNRRWRFAYFRFLYDLWDKI 1070

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255581850|ref|XP_002531725.1| leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis] gi|223528628|gb|EEF30645.1| leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]

 Score =  562 bits (1449), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 332/725 (45%), Positives = 440/725 (60%), Gaps = 68/725 (9%)

Query: 4    LEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNT-----------------------GP 40
            L  L L  N L+  I S A+GNLTS+  LDLS N+                         
Sbjct: 353  LRSLDLSFNSLEEGIPS-AIGNLTSLKSLDLSRNSLEGDIPSAIGNLASLSSLDLSRNSL 411

Query: 41   EGRIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQ 100
            EG IP    +LCNL+S+ L    LSQEI+E+  I SGCVS  LESL L SS +SGHL+D+
Sbjct: 412  EGGIPTWFRNLCNLRSLELSINKLSQEINEVFEILSGCVSDILESLILPSSQLSGHLSDR 471

Query: 101  LGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTL--------------- 145
            L +FKNL  LDL +N I GPIP++LG L+ L  L + NNKLNG+L               
Sbjct: 472  LVKFKNLAYLDLNDNLISGPIPENLGELNFLISLDLGNNKLNGSLPIDFGMLSKLNYVDI 531

Query: 146  ---------SEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQLVALGFHNCY-VGSRFP 195
                     SEIHF+NLT L+ F+   N+L L V  DW P FQ V+     C+ VG +FP
Sbjct: 532  SNNSLEGEISEIHFANLTNLATFKASSNQLRLRVSPDWFPAFQRVSTISLKCWKVGPQFP 591

Query: 196  QWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQITDLT-KVTQLLF 254
             W+HS K+L YL+L NS +S   P  F   + +L  ++L  NQ HG I  L+   +    
Sbjct: 592  TWIHSLKYLAYLDLSNSTISSTLPTWFHNFSSRLYQINLSHNQMHGTIPYLSIDDSDYSL 651

Query: 255  LSVHSNNMSGPLPLISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGE 314
            + + SNN  G +P ISSN   LDLSNNSFSGS+S +LCY+   P+++  L L +N   GE
Sbjct: 652  IDLSSNNFGGSMPFISSNPFGLDLSNNSFSGSISSFLCYK---PRTINVLNLGENLFSGE 708

Query: 315  IPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALE 374
            IPDCWM++    ++ LSNN F+G +P S+G+L+ L  L +  N LSG +P+SLK+CT+L+
Sbjct: 709  IPDCWMNWNYTNVIRLSNNYFSGNIPESIGTLSELSVLNIRNNNLSGEMPISLKHCTSLQ 768

Query: 375  SLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFG 434
             LD+  NE  G I TW G+ F   ++L LR N FHG +P  LC +  L ILD A+NNL G
Sbjct: 769  VLDLSGNELSGEITTWMGQHFQGTLILNLRGNKFHGFIPEELCGMTALVILDFANNNLNG 828

Query: 435  TIPKCINNITGMVAANSFTRSSQ---QYLPLPLDGDVILTEKASVVSEGEAIEYDEILNL 491
            TIP+CINN T +++  S+ +  +    Y P      +  +E + +   G+ +EY   L  
Sbjct: 829  TIPRCINNFTALLSGTSYLKDGKVLVDYGP-----TLTYSESSLIERNGKLVEYSTTLGF 883

Query: 492  VKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLS 551
            V+  D S N L+  IP EMT+L+    LN SHNS TGRIPE+IGAM++L+ +DFS NQLS
Sbjct: 884  VRSLDFSNNKLSGEIPEEMTSLRGLLFLNLSHNSLTGRIPENIGAMKALQILDFSRNQLS 943

Query: 552  GEIPQSMSNLMSLNHLNLSNNKLTGKIPSSTQLQSFDASSFTGNDLCGAPLPKNCA---- 607
            GEIPQSMS+L  LN+LNLS+NKL+G IPSSTQLQSFD+SSF+GN+LCG PL ++C+    
Sbjct: 944  GEIPQSMSSLTFLNNLNLSSNKLSGIIPSSTQLQSFDSSSFSGNNLCGPPLTQSCSGDGE 1003

Query: 608  -ENVSVSEDENGDEDEDEVDHW--LYVSIALGFVVGFGCFIGPLIFNRRWRYNYYHFLNR 664
              ++     E+G     E   W   YVSIA GFV+GF   +GPL FN+RWR  Y++FL  
Sbjct: 1004 KPDIEKRTTEDGGNGSPEAIDWFYFYVSIAPGFVIGFWVVVGPLAFNKRWRRLYFNFLED 1063

Query: 665  LENII 669
            L N I
Sbjct: 1064 LWNKI 1068

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|315436720|gb|ADU18533.1| verticillium wilt resistance-like protein [Gossypium barbadense]

 Score =  555 bits (1430), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 323/697 (46%), Positives = 431/697 (61%), Gaps = 40/697 (5%)

Query: 4    LEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVH 63
            LE+L+L +N   G+I S    NLTS++ LDLS N    G +P SM SLC+LK I L G+H
Sbjct: 322  LEFLNLGSNYFHGSI-SNGFQNLTSLTTLDLSDNE-LTGAVPNSMGSLCSLKKIKLSGLH 379

Query: 64   LSQEISEILNIFS--GCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPI 121
            LS+++SEIL   S  GC+   LESL L S  I GHLTD++  FKNL +L L+ NSI G I
Sbjct: 380  LSRDLSEILQALSSPGCLLNGLESLYLDSCEIFGHLTDRILLFKNLADLSLSRNSISGSI 439

Query: 122  PQSLGHLSNLRVLQIYNNKLNGTL------------------------SEIHFSNLTKLS 157
            P SLG L++LR L +  N++NGTL                        SE+HF+NLT+L 
Sbjct: 440  PASLGLLASLRTLDLSQNRVNGTLPESIGQLWKMEKLWLSHNMLEGVVSEVHFANLTRLR 499

Query: 158  WFRVGGNKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDL 217
             F+  GN L LE   +W+PPFQL  +   + ++G +FP WL SQ+   YL++  +G+ D 
Sbjct: 500  LFQASGNPLVLEASPEWVPPFQLGVMALSSWHLGPKFPSWLRSQRDFVYLDISVTGIIDT 559

Query: 218  FPIRFLKSAFQLKFLDLGLNQFHGQI---TDLTKVTQLLFLSVHSNNMSGPLPLISSNLV 274
            FP  F   +     L+L  NQ +G++      + V  L+++ +  N+  GPLP +SS + 
Sbjct: 560  FPNWFWNLSTIYFSLNLSHNQIYGELPHRIGTSPVADLVYVDLSFNHFDGPLPCLSSKVN 619

Query: 275  YLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNK 334
             LDLS+N FSG +S+ LC ++ EP  L  L L DN L GEIPDCWM++ N+  ++L NN 
Sbjct: 620  TLDLSSNLFSGPISNLLCCKMEEPYWLETLHLADNHLSGEIPDCWMNWPNMVSVDLENNS 679

Query: 335  FTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGER 394
             +G +P+S+GSL  L  L L KN LSG +P SL+NCT+L ++D+GEN FVGNIP W GE+
Sbjct: 680  LSGVIPSSMGSLNLLQSLHLRKNNLSGVLPSSLQNCTSLLAIDLGENHFVGNIPGWIGEK 739

Query: 395  FSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTR 454
             S  +++ L SN F G +P  LC L++L ILDLA NNL GTIPKC  N++ M A     +
Sbjct: 740  LSDSIIISLGSNRFQGQIPDNLCSLSYLTILDLAHNNLSGTIPKCFMNLSAMAA----NQ 795

Query: 455  SSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLK 514
            +S   +           E   ++ +G  +EY   L LV   D+S NNL   IP  MT+L 
Sbjct: 796  NSSNPISYAFGHFGTSLETLLLMIKGILLEYSSTLQLVTSMDLSDNNLAGEIPAGMTDLL 855

Query: 515  ATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLSNNKL 574
              + LN S+N   GRIP++IG +R LESID S NQL GEIP SMS L  L++LNLS N L
Sbjct: 856  GLRFLNLSNNQLKGRIPKNIGNLRLLESIDLSRNQLRGEIPPSMSALTFLSYLNLSENNL 915

Query: 575  TGKIPSSTQLQSFDASSFTGNDLCGAPLPKNCAENVSVSEDENGDE----DEDEVDH-WL 629
            TGKIPSSTQLQSFD SS+ GN LCG PL + C+ + + S D N +E    D  EVD  W 
Sbjct: 916  TGKIPSSTQLQSFDISSYDGNHLCGPPLLEICSTDATTSSDHNNNENNEGDGLEVDWLWF 975

Query: 630  YVSIALGFVVGFGCFIGPLIFNRRWRYNYYHFLNRLE 666
            Y S+A GFVVGF   +GPL+FN+ WR+ Y+  L RLE
Sbjct: 976  YASMAFGFVVGFWVVMGPLLFNKSWRFRYFRILERLE 1012

Source: Gossypium barbadense

Species: Gossypium barbadense

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356561588|ref|XP_003549063.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2-like [Glycine max]

 Score =  517 bits (1331), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 306/717 (42%), Positives = 415/717 (57%), Gaps = 64/717 (8%)

Query: 4    LEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLN-----------------------TGP 40
            L+ L L ++ L GTI S+ALGNLTS+  LDLS+N                          
Sbjct: 353  LKSLDLSSSNLHGTI-SDALGNLTSLVELDLSINQLEGNIPTCLGNLTSLVELHLSRNQL 411

Query: 41   EGRIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQ 100
            EG IP S+ +LCNL+ I+L  + L+Q+++E+L I + C+S  L +L ++SS +SG+LTD 
Sbjct: 412  EGNIPTSLGNLCNLRVIDLSYLKLNQQVNELLEILAPCISHGLTTLVVQSSRLSGNLTDH 471

Query: 101  LGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKL------------------- 141
            +G FKN+D LD +NNSI G +P+S G LS+LR L +  NK                    
Sbjct: 472  IGAFKNIDLLDFSNNSIGGALPRSFGKLSSLRYLDLSMNKFSGNPFESLRSLSKLLSLHI 531

Query: 142  -----NGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQ 196
                 +G + E   +NLT L+ F   GN  TL+V  +WIP FQL  L   +  +G  FP 
Sbjct: 532  DGNLFHGVVKEDDLANLTSLTEFVASGNNFTLKVGPNWIPNFQLTYLEVTSWQLGPSFPL 591

Query: 197  WLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQI-TDLTKVTQLLFL 255
            W+ SQ  LQY+ L N+G+    P +  ++  Q+ +L+L  N  HG+I T L     +  +
Sbjct: 592  WIQSQNQLQYVGLSNTGIFGSIPTQMWEALSQVSYLNLSRNHIHGEIGTTLKNPISIHVI 651

Query: 256  SVHSNNMSGPLPLISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEI 315
             + SN++ G LP +S ++++LDLS+NSFS S++ +LC   +EP  L  L L  N+L GEI
Sbjct: 652  DLSSNHLCGKLPYLSRDVIWLDLSSNSFSESMNDFLCNDQDEPMQLELLNLASNNLSGEI 711

Query: 316  PDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALES 375
            PDCWM++ +L  + L +N F G LP S+GSL  L  L +  N LSG  P SLK    L S
Sbjct: 712  PDCWMNWTSLGDVNLQSNHFVGNLPQSMGSLADLQSLQISNNTLSGIFPTSLKKNNQLIS 771

Query: 376  LDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGT 435
            LD+GEN   G IPTW GE    + +L LRSN+F G +P  +C ++ LQ+LDLA NNL G 
Sbjct: 772  LDLGENNLSGTIPTWVGENLLNVKILRLRSNSFAGHIPKEICQMSLLQVLDLAQNNLSGN 831

Query: 436  IPKCINNITGMVAANSFT--RSSQQYLPLPLDGDVILTEKASVVS-----EGEAIEYDEI 488
            IP C +N++ M   N  T  R S   L  P       + + S+VS     +G   EY  I
Sbjct: 832  IPSCFSNLSSMTLMNQSTDPRISSVALLSP-----YYSSRVSIVSVLLWLKGRGDEYRNI 886

Query: 489  LNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVN 548
            L LV   D+S N L   IP E+T L     LN SHN   G IP  IG MRSL+SIDFS N
Sbjct: 887  LGLVTSIDLSSNKLLGEIPREITYLNGLNFLNLSHNQLIGHIPRGIGNMRSLQSIDFSRN 946

Query: 549  QLSGEIPQSMSNLMSLNHLNLSNNKLTGKIPSSTQLQSFDASSFTGNDLCGAPLPKNCAE 608
            QLSGEIP S++NL  L+ L+LS N L G IP+ TQL++FDASSF GN+LCG PLP NC+ 
Sbjct: 947  QLSGEIPPSIANLSFLSMLDLSYNHLKGNIPTGTQLETFDASSFIGNNLCGPPLPINCSS 1006

Query: 609  NVSVSEDENGDEDEDEVDHWLYVSIALGFVVGFGCFIGPLIFNRRWRYNYYHFLNRL 665
            N      E  D       +W +VS+ +GF+VGF   I PL+  R WRY Y+HFL+ +
Sbjct: 1007 NGKTHSYEGSD---GHGVNWFFVSMTIGFIVGFWIVIAPLLICRSWRYAYFHFLDHV 1060

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356561552|ref|XP_003549045.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase FLS2-like [Glycine max]

 Score =  516 bits (1330), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 302/692 (43%), Positives = 410/692 (59%), Gaps = 38/692 (5%)

Query: 4    LEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVH 63
            L++L+L  N L GTI S+ALGNLTS+  LDLS N   EG IP S+ +LCNL+ I+L  + 
Sbjct: 322  LKFLNLMGNNLHGTI-SDALGNLTSLVELDLSHNQ-LEGNIPTSLGNLCNLRVIDLSYLK 379

Query: 64   LSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQ 123
            L+Q+++E+L I + C+S  L  L ++SS +SG+LTD +G FKN+D L  +NNSI G +P+
Sbjct: 380  LNQQVNELLEILAPCISHGLTRLAVQSSRLSGNLTDHIGAFKNIDTLLFSNNSIGGALPR 439

Query: 124  SLGHLSNLRVLQIYNNKL------------------------NGTLSEIHFSNLTKLSWF 159
            S G LS+LR L +  NK                         +G + E   +NLT L+  
Sbjct: 440  SFGKLSSLRYLDLSMNKFSGNPFESLRSLSKLLSLHIDGNLFHGVVKEDDLANLTSLTEI 499

Query: 160  RVGGNKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFP 219
               GN  TL V  +WIP FQL  L   +  +G  FP W+ SQ  L+Y+ L N+G+ D  P
Sbjct: 500  HASGNNFTLTVGPNWIPNFQLNYLEVTSWQLGPSFPLWIQSQNQLEYVGLSNTGIFDSIP 559

Query: 220  IRFLKSAFQLKFLDLGLNQFHGQI-TDLTKVTQLLFLSVHSNNMSGPLPLISSNLVYLDL 278
             +  ++  Q+ +L+L  N  HG+I T L     +  + + SN++ G LP +SS++  LDL
Sbjct: 560  TQMWEALSQVLYLNLSRNHIHGEIGTTLKNPISIPTIDLSSNHLCGKLPYLSSDVFQLDL 619

Query: 279  SNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGK 338
            S+NSFS S++ +LC   +EP  L  L L  N+L GEIPDCWM++  L  + L +N F G 
Sbjct: 620  SSNSFSESMNDFLCNDQDEPMRLEFLNLASNNLSGEIPDCWMNWTLLADVNLQSNHFVGN 679

Query: 339  LPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRM 398
            LP S+GSL  L  L +  N LSG  P SLK    L SLD+GEN   G IPTW GE    +
Sbjct: 680  LPQSMGSLAELQSLQIRNNTLSGIFPTSLKKNNQLISLDLGENNLSGTIPTWVGENLLNV 739

Query: 399  VVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQ 458
             +L LRSN+F G +P  +C ++ LQ+LDLA NNL G IP C +N++ M   N   +S+  
Sbjct: 740  KILRLRSNSFAGHIPNEICQMSHLQVLDLAQNNLSGNIPSCFSNLSAMTLKN---QSTDP 796

Query: 459  YLPLPLDGDVILTEKASVVS-----EGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNL 513
             +     G    + + S+VS     +G   EY  IL LV   D+S N L   IP E+T L
Sbjct: 797  RIYSQAQGGRYYSSRQSIVSVLLWLKGRGDEYRNILGLVTSIDLSSNKLLGEIPREITYL 856

Query: 514  KATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLSNNK 573
                 LN SHN   G IP+ IG MRSL+SIDFS NQL GEIP S++NL  L+ L+LS N 
Sbjct: 857  NGLNFLNMSHNQLIGHIPQGIGNMRSLQSIDFSRNQLFGEIPPSIANLSFLSMLDLSYNH 916

Query: 574  LTGKIPSSTQLQSFDASSFTGNDLCGAPLPKNCAENVSVSEDENGDEDEDEVDHWLYVSI 633
            L G IP+ TQLQ+F+ASSF GN+LCG PLP NC+ N      E  D       +W +VS+
Sbjct: 917  LKGNIPTGTQLQTFNASSFIGNNLCGPPLPINCSSNGKTHSYEGSD---GHGVNWFFVSM 973

Query: 634  ALGFVVGFGCFIGPLIFNRRWRYNYYHFLNRL 665
             +GF+VGF   I PL+  R WRY Y+HFL+ +
Sbjct: 974  TIGFIVGFWIVIAPLLICRSWRYAYFHFLDHV 1005

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539443|ref|XP_002510786.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223549901|gb|EEF51388.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  516 bits (1330), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 300/697 (43%), Positives = 417/697 (59%), Gaps = 40/697 (5%)

Query: 1    FIHLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLR 60
            F  LE L L    +QG I S  + NL ++  L L+  T  EG +P+++ +LCNL+ I L 
Sbjct: 329  FRQLESLDLSQTNVQGEI-SSTIQNLIALVNLKLAF-TKLEGTLPQTIGNLCNLQIIRLS 386

Query: 61   GVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGP 120
            G  L  ++S++   F+GC+S  LE L    ++ SGH+ + +GQ   L +LDL++N I G 
Sbjct: 387  GNKLGGDVSKVFESFAGCISQSLEEL---GNNFSGHIGNAIGQLGTLQHLDLSDNFISGS 443

Query: 121  IPQSLGHLS------------------------NLRVLQIYNNKLNGTLSEIHFSNLTKL 156
            IP+S+G LS                        NL+ + I +N L G +SE+HF+NLT L
Sbjct: 444  IPESIGRLSSLIWAFLPNNQLTGTLPVTFRNLSNLQTIDISHNLLEGVVSEVHFTNLTSL 503

Query: 157  SWFRVGGNKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSD 216
            + F    N L L+V   W+PPF+L  LG     +G +FP WL SQ +  YL+L  + +SD
Sbjct: 504  TAFVASHNHLVLKVSPAWVPPFRLKELGLRYWNLGPQFPIWLQSQDYFTYLDLSCTEISD 563

Query: 217  LFPIRFLKSAFQLKFLDLGLNQFHGQI-TDLTKVTQLLFLSVHSNNMSGPLPLISSNLVY 275
              P  F      +K+L+L  NQ  GQ+ + L+ ++ L  + +  N   GPLP   +++  
Sbjct: 564  SIPTWFWNLTSHIKYLNLSHNQIPGQLPSSLSIISMLPTIYLGFNQFKGPLPRFEADISA 623

Query: 276  LDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKF 335
            LDLSNN FSGS++ +LCY    P SL  L L +N L GEIPDCWM++++L +++L NN  
Sbjct: 624  LDLSNNFFSGSITRFLCYPTVVPYSLRILHLGENQLSGEIPDCWMNWKSLTVIKLGNNNL 683

Query: 336  TGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERF 395
            TGK+P+S+G L +L  L L KN LSG IP+SL NCT L +LD+  N+FVG +P W G  F
Sbjct: 684  TGKIPSSIGVLWNLRSLQLRKNSLSGEIPMSLGNCTRLLTLDLAANDFVGKVPDWLGGSF 743

Query: 396  SRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTR- 454
              ++ L LRSN   G +P+ +C L+ LQILD A NNL GT+PKCI N+T M      T+ 
Sbjct: 744  PELLALSLRSNQLTGEIPSEICRLSSLQILDFAGNNLSGTVPKCIANLTSMTTVQPRTKI 803

Query: 455  --SSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTN 512
              SS  Y  L      I  E A VV++G+ +EYD IL LVK  D+S N ++  IP E+T 
Sbjct: 804  FYSSTGYYSLV----EIFLENAYVVTKGKEVEYDSILTLVKSMDLSSNKISGEIPAELTA 859

Query: 513  LKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLSNN 572
            L    SLN S N  TG+IP +IG M  LES+D S NQ+SG IP SM+    LN+LNLS N
Sbjct: 860  LLGLMSLNLSGNDLTGQIPNNIGDMPVLESLDLSRNQISGNIPPSMAKSHFLNYLNLSYN 919

Query: 573  KLTGKIPSSTQLQSFDASSFTGND-LCGAPLPKNC--AENVSVSEDENGDEDEDEVDHWL 629
             L+G+IPSSTQLQS DASSF GN+ LCG PL  +C  AE    +   +G+E E       
Sbjct: 920  DLSGEIPSSTQLQSQDASSFVGNNRLCGPPLAISCTVAETPQDTGKGSGNEGEGIKIDEF 979

Query: 630  YVSIALGFVVGFGCFIGPLIFNRRWRYNYYHFLNRLE 666
            Y+ + +G VVGF    G L++NR WR+ Y+ FL++++
Sbjct: 980  YLGLTIGSVVGFWGVFGSLLYNRSWRHAYFQFLDKVK 1016

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356561661|ref|XP_003549098.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2-like [Glycine max]

 Score =  516 bits (1330), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 301/696 (43%), Positives = 411/696 (59%), Gaps = 46/696 (6%)

Query: 4    LEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVH 63
            L++L+L +N L GTI S+ALGNLTS+  LDLS N   EG IP S+ +LCNL+ I+   + 
Sbjct: 322  LKFLNLGDNHLHGTI-SDALGNLTSLVELDLSGNQ-LEGNIPTSLGNLCNLRDIDFSNLK 379

Query: 64   LSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQ 123
            L+Q+++E+L I + C+S  L  L ++SS +SG++TD +G FKN+  LD +NNSI G +P+
Sbjct: 380  LNQQVNELLEILAPCISHGLTRLAVQSSRLSGNMTDHIGAFKNIVRLDFSNNSIGGALPR 439

Query: 124  SLGHLSNLRVLQIYNNKL------------------------NGTLSEIHFSNLTKLSWF 159
            S G LS++R L +  NK                         +G + E   +NLT L+ F
Sbjct: 440  SFGKLSSIRYLNLSINKFSGNPFESLGSLSKLSSLYIDGNLFHGVVKEDDLANLTSLTEF 499

Query: 160  RVGGNKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFP 219
               GN  TL+V  +W P F+L  L   +  +   FP W+ SQ  LQY+ L N+G+ D  P
Sbjct: 500  GASGNNFTLKVGPNWRPNFRLSYLDVTSWQLSPNFPSWIQSQNKLQYVGLSNTGILDSIP 559

Query: 220  IRFLKSAFQLKFLDLGLNQFHGQI-TDLTKVTQLLFLSVHSNNMSGPLPLISSNLVYLDL 278
              F ++  Q+ +L+L  N  HG+I T       +  + + SN++ G LP +SS +  LDL
Sbjct: 560  TWFWETLSQILYLNLSHNHIHGEIETTFKNPKSIQTIDLSSNHLCGKLPYLSSGVFQLDL 619

Query: 279  SNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGK 338
            S+NSFS S++ +LC   +EP  L  L L  N+L GEIPDCWM++ +L  + L +N F G 
Sbjct: 620  SSNSFSESMNDFLCNDQDEPVQLKFLNLASNNLSGEIPDCWMNWTSLVYVNLQSNHFVGN 679

Query: 339  LPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRM 398
            LP S+GSL  L  L +  N LSG  P SLK    L SLD+GEN   G IPTW GE+   +
Sbjct: 680  LPQSMGSLADLQSLQIRNNTLSGIFPTSLKKNNQLISLDLGENNLSGTIPTWVGEKLLNV 739

Query: 399  VVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFT----R 454
             +L+LRSN+F G +P  +C L+ LQ+LDLA NNL G IP C +N++ M   N  T     
Sbjct: 740  KILLLRSNSFTGHIPNEICQLSLLQVLDLAQNNLSGNIPSCFSNLSAMTLKNQSTDPRIY 799

Query: 455  SSQQYLPLPLDGDVILTEKASVVS-----EGEAIEYDEILNLVKETDVSRNNLTKSIPLE 509
            S  Q+        ++ T   S+VS     +G   EY   L LV   D+S N L   IP E
Sbjct: 800  SQAQF-------GLLYTSWYSIVSVLLWLKGRGDEYRNFLGLVTIIDLSSNKLLGEIPRE 852

Query: 510  MTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNL 569
            +T L     LN SHN   G IP+ IG MRSL+SIDFS NQLSGEIP +++NL  L+ L+L
Sbjct: 853  ITYLNGLNFLNLSHNQLIGHIPQGIGNMRSLQSIDFSRNQLSGEIPPTIANLSFLSMLDL 912

Query: 570  SNNKLTGKIPSSTQLQSFDASSFTGNDLCGAPLPKNCAENVSVSEDENGDEDEDEVDHWL 629
            S N L G IP+ TQLQ+FDASSF GN+LCG PLP NC+ N      E  D       +W 
Sbjct: 913  SYNHLKGTIPTGTQLQTFDASSFIGNNLCGPPLPINCSSNGKTHSYEGSD---GHGVNWF 969

Query: 630  YVSIALGFVVGFGCFIGPLIFNRRWRYNYYHFLNRL 665
            +VS+ +GF+VGF   I PL+  R WRY Y+HFL+ +
Sbjct: 970  FVSMTIGFIVGFWIVIAPLLICRSWRYAYFHFLDHV 1005

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|209970607|gb|ACJ03066.1| M18S-3Ap [Malus floribunda]

 Score =  516 bits (1328), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 294/655 (44%), Positives = 399/655 (60%), Gaps = 15/655 (2%)

Query: 20   SEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLS-QEISEILNIFSGC 78
            S ++GN+TS+  L L  N   EG+IP S+  LC LK ++L   H + Q  S I    S C
Sbjct: 385  SSSIGNMTSLVNLHLD-NNLLEGKIPNSLGHLCKLKDLDLSKNHFTVQRPSVIFESLSRC 443

Query: 79   VSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYN 138
                ++SL LR ++ISG +   LG   +L+ LD++ N   G   + +G L  L  L I N
Sbjct: 444  GPNGIKSLSLRYTNISGPIPMSLGNLSSLEKLDISGNQFNGTFTEVIGQLKMLTDLDISN 503

Query: 139  NKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWL 198
            N L   +SE+ FSNLTKL  F   GN  TL+   DW+PPFQL  L   + ++G  +P WL
Sbjct: 504  NSLEDAVSEVSFSNLTKLKHFIANGNSFTLKTSRDWVPPFQLEILQLDSWHLGPEWPMWL 563

Query: 199  HSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQITDLTKVTQLLFLSVH 258
             +Q  L  L+L  +G+S   P  F     ++++L+L  NQ +GQI ++     +  + + 
Sbjct: 564  RTQTQLTRLSLSCTGISSTVPTWFWNLTSKVRYLNLSHNQLYGQIQNIV-AGPMSVVDLS 622

Query: 259  SNNMSGPLPLISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDC 318
            SN+ +G LP++ ++L +LDLSN+SFSGSV H+ C R +EP+ L  L L +N L G++PDC
Sbjct: 623  SNHFTGALPIVPTSLFWLDLSNSSFSGSVFHFFCDRPDEPRQLHFLHLGNNLLSGKVPDC 682

Query: 319  WMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDV 378
            WMS+Q L  L L NN  TG +P S+G L  L  L L  N L G +P SL+NCT L  +D+
Sbjct: 683  WMSWQYLSFLNLENNNLTGNVPMSMGYLDWLESLHLRNNHLYGELPHSLQNCTRLSVVDL 742

Query: 379  GENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPK 438
            GEN F G+IP W G+  S + +L LRSN F G +P  +C L  LQILDLA N L G IP+
Sbjct: 743  GENGFSGSIPIWIGKSLSELQILNLRSNKFEGDIPNEVCYLTSLQILDLAHNKLSGMIPR 802

Query: 439  CINNITGMVAANSFTRSSQQYLPLPLDGDVI---LTEKASVVSEGEAIEYDEILNLVKET 495
            C +N++ M     F+ S    + + L+G  +   +T KA +V++G  +EY +IL  VK  
Sbjct: 803  CFHNLSAMA---DFSESRDASVYVILNGISVPLSVTAKAILVTKGREMEYGKILKFVKFM 859

Query: 496  DVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIP 555
            D+S N +   IP E+T+L A +SLN S+N FTGRIP  IG M  LES+DFS+NQL GEIP
Sbjct: 860  DLSCNFMYGEIPEELTDLLALKSLNLSNNHFTGRIPSKIGNMAQLESLDFSMNQLDGEIP 919

Query: 556  QSMSNLMSLNHLNLSNNKLTGKIPSSTQLQSFDASSFTGNDLCGAPLPKNCAEN-----V 610
            QSM+NL  L+HLNLSNN LTG+IP STQLQS D SSF GN+LCGAPL KNC+EN      
Sbjct: 920  QSMTNLTFLSHLNLSNNNLTGRIPKSTQLQSLDQSSFVGNELCGAPLNKNCSENGVIPPP 979

Query: 611  SVSEDENGDEDEDEVDHWLYVSIALGFVVGFGCFIGPLIFNRRWRYNYYHFLNRL 665
            +V  D  G  +  E D W YVS+ +GF  GF   +G L+ N  W       LNR+
Sbjct: 980  TVEHDGGGGYNLLE-DEWFYVSLGVGFFTGFWIVLGSLLVNMPWSILLSQLLNRI 1033

Source: Malus floribunda

Species: Malus floribunda

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356561667|ref|XP_003549101.1| PREDICTED: leucine-rich repeat receptor protein kinase EXS-like [Glycine max]

 Score =  514 bits (1323), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 299/696 (42%), Positives = 409/696 (58%), Gaps = 45/696 (6%)

Query: 4    LEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVH 63
            L++L+L +N L GTI S+ALGNLTS+  LDLS N   EG IP S+ +LCNL+ I+   + 
Sbjct: 320  LKFLNLGDNHLHGTI-SDALGNLTSLVELDLSGNQ-LEGNIPTSLGNLCNLRDIDFSNLK 377

Query: 64   LSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQ 123
            L+Q+++E+L I + C+S  L  L ++SS +SGHLTD +G FKN++ LD +NNSI G +P+
Sbjct: 378  LNQQVNELLEILAPCISHGLTRLAVQSSRLSGHLTDYIGAFKNIERLDFSNNSIGGALPR 437

Query: 124  SLGHLSNLRVLQIYNNKLNG------------------------TLSEIHFSNLTKLSWF 159
            S G  S+LR L +  NK +G                         + E   +NLT L   
Sbjct: 438  SFGKHSSLRYLDLSTNKFSGNPFESLGSLSKLSSLYIGGNLFQTVVKEDDLANLTSLMEI 497

Query: 160  RVGGNKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFP 219
               GN  TL+V  +W+P FQL  L   +  +G  FP W+ SQ  L+YL++ N+G+ D  P
Sbjct: 498  HASGNNFTLKVGPNWLPNFQLFHLDVRSWQLGPSFPSWIKSQNKLEYLDMSNAGIIDSIP 557

Query: 220  IRFLKSAFQLKFLDLGLNQFHGQI-TDLTKVTQLLFLSVHSNNMSGPLPLISSNLVYLDL 278
             +  ++  Q+ +L+L  N  HG+  T L     +  + + SN++ G LP +SS++  LDL
Sbjct: 558  TQMWEALPQVLYLNLSHNHIHGESGTTLKNPISIPVIDLSSNHLCGKLPYLSSDVSQLDL 617

Query: 279  SNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGK 338
            S+NSFS S++ +LC   +EP  L  L L  N+L GEIPDCWM++  L  + L +N F G 
Sbjct: 618  SSNSFSESMNDFLCNDQDEPMQLQFLNLASNNLSGEIPDCWMNWTFLGNVNLQSNHFVGN 677

Query: 339  LPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRM 398
            LP S+GSL  L  L +  N  SG  P SLK    L SLD+GEN   G IPTW GE+  ++
Sbjct: 678  LPQSMGSLAELQSLQIRNNTFSGIFPSSLKKNNQLISLDLGENNLSGCIPTWVGEKLLKV 737

Query: 399  VVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFT----R 454
             +L LRSN+F G +P  +C ++ LQ+LDLA+NNL G IP C  N++ M   N  T     
Sbjct: 738  KILRLRSNSFAGHIPNEICQMSHLQVLDLAENNLSGNIPSCFCNLSAMTLKNQSTYPRIY 797

Query: 455  SSQQYLPLPLDGDVILTEKASVVS-----EGEAIEYDEILNLVKETDVSRNNLTKSIPLE 509
            S +QY           +    +VS     +G   EY   L LV + D+S N L   IP E
Sbjct: 798  SEEQY------AGSSYSFNYGIVSVLLWLKGRGDEYKNFLGLVTDIDLSSNKLLGKIPRE 851

Query: 510  MTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNL 569
            +T L     LN SHN   G IP+ IG MRS+++IDFS NQLSGEIP ++SNL  L+ L+L
Sbjct: 852  ITYLNGLNFLNLSHNQLIGHIPQGIGNMRSIQTIDFSRNQLSGEIPPTISNLSFLSMLDL 911

Query: 570  SNNKLTGKIPSSTQLQSFDASSFTGNDLCGAPLPKNCAENVSVSEDENGDEDEDEVDHWL 629
            S N L G IP+ TQLQ+FDASSF GN+LCG PLP NC+ N      E  D       +W 
Sbjct: 912  SYNHLKGNIPTGTQLQTFDASSFIGNNLCGPPLPINCSSNGKTHSYEGSD---GHGVNWF 968

Query: 630  YVSIALGFVVGFGCFIGPLIFNRRWRYNYYHFLNRL 665
            +VS  +GFVVGF   I PL+  R WRY Y+HFL+ +
Sbjct: 969  FVSATIGFVVGFWIVIAPLLICRSWRYAYFHFLDHV 1004

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	677
TAIR|locus:2044767	905	AT2G34930 "AT2G34930" [Arabido	0.877	0.656	0.314	1.4e-64
TAIR|locus:2119430	741	RLP47 "receptor like protein 4	0.936	0.855	0.305	6e-64
TAIR|locus:2137296	811	RLP46 "receptor like protein 4	0.868	0.725	0.297	3.3e-63
TAIR|locus:2129246	891	RLP50 "receptor like protein 5	0.923	0.701	0.306	5e-60
TAIR|locus:2078102	875	RLP33 "receptor like protein 3	0.935	0.723	0.293	2.4e-56
TAIR|locus:2173777	792	RLP54 "receptor like protein 5	0.920	0.786	0.294	4.2e-56
TAIR|locus:2046397	589	RLP22 "receptor like protein 2	0.841	0.967	0.313	2.9e-55
TAIR|locus:2096349	860	RLP31 "receptor like protein 3	0.923	0.726	0.290	4.5e-55
TAIR|locus:2087253	884	RLP39 "AT3G24900" [Arabidopsis	0.859	0.658	0.303	5.8e-55
TAIR|locus:2086979	890	RLP42 "receptor like protein 4	0.930	0.707	0.292	1.7e-54

TAIR|locus:2044767 AT2G34930 "AT2G34930" [Arabidopsis thaliana (taxid:3702)]

 Score = 658 (236.7 bits), Expect = 1.4e-64, P = 1.4e-64
 Identities = 195/621 (31%), Positives = 289/621 (46%)

Query:     4 LEYLSLRNN-KLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGV 62
             LE L L NN  LQG I S  LG+L  +  LDLS N    G+I   + +    K  +L  +
Sbjct:   297 LETLDLSNNLALQGEIPS-VLGDLPQLKFLDLSANE-LNGQIHGFLDAFSRNKGNSLVFL 354

Query:    63 HLSQ-EISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPI 121
              LS  +++  L    G +   L++LDL S+S +G +   +G   +L  LDL+NN++ G I
Sbjct:   355 DLSSNKLAGTLPESLGSLR-NLQTLDLSSNSFTGSVPSSIGNMASLKKLDLSNNAMNGTI 413

Query:   122 PQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGN---KLTLEVRHDWIPPF 178
              +SLG L+ L  L +  N   G L + HF NL  L   R+       L  ++   WIPPF
Sbjct:   414 AESLGQLAELVDLNLMANTWGGVLQKSHFVNLRSLKSIRLTTEPYRSLVFKLPSTWIPPF 473

Query:   179 QLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKS-AFQLKFLDLGLN 237
             +L  +   NC +G  FP WL  Q  L ++ L N+G+ D  P  +    + ++ +L L  N
Sbjct:   474 RLELIQIENCRIGL-FPMWLQVQTKLNFVTLRNTGIEDTIPDSWFSGISSKVTYLILANN 532

Query:   238 QFHGQITDLTKVTQLLFLSVHSNNMSGPLPLISSNLVYLDLSNNSFSGSVSHYLCYRINE 297
             +  G++       +L  + + SNN  G  PL S+N   L L  N+FSGS+   +   +  
Sbjct:   533 RIKGRLPQKLAFPKLNTIDLSSNNFEGTFPLWSTNATELRLYENNFSGSLPQNI--DVLM 590

Query:   298 PKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNXXXXXXXXXXXXXGKN 357
             P+ +  + L  NS  G IP        L+IL L  N F+G  P               +N
Sbjct:   591 PR-MEKIYLFSNSFTGNIPSSLCEVSGLQILSLRKNHFSGSFPKCWHRQFMLWGIDVSEN 649

Query:   358 RLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLC 417
              LSG IP SL    +L  L + +N   G IP  +    S +  + L  N   G LP+ + 
Sbjct:   650 NLSGEIPESLGMLPSLSVLLLNQNSLEGKIPE-SLRNCSGLTNIDLGGNKLTGKLPSWVG 708

Query:   418 DLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKAS-- 475
              L+ L +L L  N+  G IP  + N+  +   +         +P  +     +    +  
Sbjct:   709 KLSSLFMLRLQSNSFTGQIPDDLCNVPNLRILDLSGNKISGPIPKCISNLTAIARGTNNE 768

Query:   476 -----VVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRI 530
                  V     A EY+ I N +   ++S NN++  IP E+  L   + LN S NS  G I
Sbjct:   769 VFQNLVFIVTRAREYEAIANSI---NLSGNNISGEIPREILGLLYLRILNLSRNSMAGSI 825

Query:   531 PESIGAMRSLESIDFSVNQLSGEIPQXXXXXXXXXXXXXXXXKLTGKIPSSTQLQSFDAS 590
             PE I  +  LE++D S N+ SG IPQ                KL G IP   + Q  D S
Sbjct:   826 PEKISELSRLETLDLSKNKFSGAIPQSFAAISSLQRLNLSFNKLEGSIPKLLKFQ--DPS 883

Query:   591 SFTGNDL-CGAPLPKNCAENV 610
              + GN+L CG PLPK C +++
Sbjct:   884 IYIGNELLCGKPLPKKCPKDI 904

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0005618 "cell wall" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IEP;IMP

TAIR|locus:2119430 RLP47 "receptor like protein 47" [Arabidopsis thaliana (taxid:3702)]

 Score = 652 (234.6 bits), Expect = 6.0e-64, P = 6.0e-64
 Identities = 206/674 (30%), Positives = 326/674 (48%)

Query:     4 LEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNT----GPE--GRIPRSMASLCNLKSI 57
             L+ L L N  L G I S +LGNL+ ++ LDLS N     GP+  G + R    L  L S+
Sbjct:    76 LKVLVLVNCNLFGKIPS-SLGNLSYLTHLDLSYNDFTSEGPDSMGNLNRLTDMLLKLSSV 134

Query:    58 NLRGVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSI 117
                 +  +Q +  +L      +S +LE+ D+  +S SG +   L    +L  L L  N  
Sbjct:   135 TWIDLGDNQ-LKGMLPSNMSSLS-KLEAFDISGNSFSGTIPSSLFMIPSLILLHLGRNDF 192

Query:   118 VGPIP-QSLGHLSNLRVLQIYNNKLNGTLSEIH-FSNLTKLSWFRVGGNKLTLEVRHDWI 175
              GP    ++   SNL++L I  N  N  + ++  FS L  L +  V G  + L++     
Sbjct:   193 SGPFEIGNISSPSNLQLLNIGRNNFNPDIVDLSIFSPLLSLGYLDVSG--INLKISSTVS 250

Query:   176 PPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLG 235
              P  +  LG  +C + S FP++L +Q  L+YL++  + +    P  +L S  +L+++++ 
Sbjct:   251 LPSPIEYLGLLSCNI-SEFPKFLRNQTSLEYLDISANQIEGQVP-EWLWSLPELRYVNIS 308

Query:   236 LNQFHG--QITDLTKV-TQLLFLSVHSNNMSGPLPLISS-NLVYLDLSNNSFSGSVSHYL 291
              N F+G     D+ +   +LL L + SN    P PL+   ++ YL  SNN FSG +   +
Sbjct:   309 HNSFNGFEGPADVIQGGRELLVLDISSNIFQDPFPLLPVVSMNYLFSSNNRFSGEIPKTI 368

Query:   292 CYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNXXXXXXXXXX 351
             C    E  +L  L L +N+  G IP C+ +  +L +L L NN  +G  P           
Sbjct:   369 C----ELDNLRILVLSNNNFSGSIPRCFENL-HLYVLHLRNNNLSGIFPEEAISHHLQSF 423

Query:   352 XXXGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGP 411
                G N  SG +P SL NC+ +E L+V +N      P+W  E    + +L+LRSN F+GP
Sbjct:   424 DV-GHNLFSGELPKSLINCSDIEFLNVEDNRINDTFPSWL-ELLPNLQILVLRSNEFYGP 481

Query:   412 LPTRLCDLAF--LQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQ---QYLPLPLDG 466
             + +    L+F  L+I D+++N   G +P   +   G    +S         QY    +D 
Sbjct:   482 IFSPGDSLSFSRLRIFDISENRFTGVLPS--DYFVGWSVMSSVVDIDGRIIQYTVTGIDR 539

Query:   467 DVILTEKASVVSEGEAIEY-DEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNS 525
             D    +  +++++G  +E       + K  DVS N L   IP  +  LK    L+ S+N+
Sbjct:   540 D-FYHKSVALINKGLKMELVGSGFTIYKTIDVSGNRLEGDIPESIGLLKEVIVLSMSNNA 598

Query:   526 FTGRIPESIGAMRSLESIDFSVNQLSGEIPQXXXXXXXXXXXXXXXXKLTGKIPSSTQLQ 585
             FTG IP S+  + +L+S+D S N+LSG IP                 +L G IP +TQ+Q
Sbjct:   599 FTGHIPPSLSNLSNLQSLDLSQNRLSGSIPGELGKLTFLEWMNFSHNRLEGPIPETTQIQ 658

Query:   586 SFDASSFTGND-LCGAPLPKNCAENVSVSXXXXXXXXXXXXXHWLYVSIALGFVVGFGC- 643
             + D+SSFT N  LCGAPL K C      +              + +++ A+G+V G  C 
Sbjct:   659 TQDSSSFTENPGLCGAPLLKKCGGEEEATKQEQDEDKEEEDQVFSWIAAAIGYVPGVVCG 718

Query:   644 -FIGPLIFN--RRW 654
               IG ++ +  R W
Sbjct:   719 LTIGHILVSHKRDW 732

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2137296 RLP46 "receptor like protein 46" [Arabidopsis thaliana (taxid:3702)]

 Score = 645 (232.1 bits), Expect = 3.3e-63, P = 3.3e-63
 Identities = 185/622 (29%), Positives = 301/622 (48%)

Query:     3 HLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGV 62
             +L+ L L  N + GT+  + +  L ++  L L  N    G IP  + SL  L ++ LR  
Sbjct:   155 NLQRLDLSRNVIGGTLSGD-IKELKNLQELILDENL-IGGAIPSEIGSLVELLTLTLRQN 212

Query:    63 HLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIP 122
               +  I   ++  +     +L+++DL+++ +S  + D +G   NL  L L+ N + G IP
Sbjct:   213 MFNSSIPSSVSRLT-----KLKTIDLQNNFLSSKIPDDIGNLVNLSTLSLSMNKLSGGIP 267

Query:   123 QSLGHLSNLRVLQIYNNK-LNGTLSEIHFSNLTKLSWFRV-GGNKLTLEVRHDWIPPFQL 180
              S+ +L NL  LQ+ NN  L+G +       L KL   R+ G NKL         P F+L
Sbjct:   268 SSIHNLKNLETLQLENNNGLSGEIPAAWLFGLQKLKVLRLEGNNKLQWNNNGYVFPQFKL 327

Query:   181 VALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFH 240
               L   +C +    P WL +Q  L YL+L  + +   FP ++L    +++ + L  N+  
Sbjct:   328 THLSLRSCGLEGNIPDWLKNQTALVYLDLSINRLEGRFP-KWLAD-LKIRNITLSDNRLT 385

Query:   241 GQIT-DLTKVTQLLFLSVHSNNMSGPLP--LISSNLVYLDLSNNSFSGSVSHYLCYRINE 297
             G +  +L +   L +L +  NN SG +P  +  S ++ L LS N+FSGSV       I +
Sbjct:   386 GSLPPNLFQRPSLYYLVLSRNNFSGQIPDTIGESQVMVLMLSENNFSGSVPK----SITK 441

Query:   298 PKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNXXXXXXXXXXXXXGKN 357
                L  L L  N L GE P  +     LE L++S+N+F+G +P               +N
Sbjct:   442 IPFLKLLDLSKNRLSGEFPR-FRPESYLEWLDISSNEFSGDVP--AYFGGSTSMLLMSQN 498

Query:   358 RLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLC 417
               SG  P + +N + L  LD+ +N+  G + +   +  S + VL LR+N+  G +P  + 
Sbjct:   499 NFSGEFPQNFRNLSYLIRLDLHDNKISGTVASLISQLSSSVEVLSLRNNSLKGSIPEGIS 558

Query:   418 DLAFLQILDLADNNLFGTIPKCINNITGMV-----AANSFTRSSQQYLPLPLDGDVILTE 472
             +L  L++LDL++NNL G +P  + N+T M+     +A +       Y  +P    +I  E
Sbjct:   559 NLTSLKVLDLSENNLDGYLPSSLGNLTCMIKSPEPSAMTIRPYFSSYTDIPNIERLIEIE 618

Query:   473 KASVVS------EGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSF 526
                + S        + + +D    L    D+S+N L   IP  + NLK+ + LN S+N F
Sbjct:   619 SEDIFSLVVNWKNSKQVLFDRNFYLYTLLDLSKNKLHGEIPTSLGNLKSLKVLNLSNNEF 678

Query:   527 TGRIPESIGAMRSLESIDFSVNQLSGEIPQXXXXXXXXXXXXXXXXKLTGKIPSSTQLQS 586
             +G IP+S G +  +ES+D S N L+GEIP+                KL G+IP S QL  
Sbjct:   679 SGLIPQSFGDLEKVESLDLSHNNLTGEIPKTLSKLSELNTLDLRNNKLKGRIPESPQLDR 738

Query:   587 FDASSFTGND--LCGAPLPKNC 606
              +  +   N+  +CG  +   C
Sbjct:   739 LNNPNIYANNSGICGMQIQVPC 760

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2129246 RLP50 "receptor like protein 50" [Arabidopsis thaliana (taxid:3702)]

 Score = 617 (222.3 bits), Expect = 5.0e-60, P = 5.0e-60
 Identities = 207/676 (30%), Positives = 316/676 (46%)

Query:     4 LEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNT-GPEGRIPRSMASLCNLKSINLRGV 62
             L  L+L      G I + +LG+L++++ LD+S N    EG  P SM+SL  L    L  +
Sbjct:   228 LRVLNLHRCNFFGKIPT-SLGSLSNLTDLDISKNEFTSEG--PDSMSSLNRLTDFQLMLL 284

Query:    63 HLSQEISEIL--NIF-----SGCVSI-ELESLDLRSSSISGHLTDQLGQFKNLDNLDLAN 114
             +LS   +  L  N F     S   S+ +LE+ D+  +S SG +   L    +L  LDL  
Sbjct:   285 NLSSLTNVDLSSNQFKAMLPSNMSSLSKLEAFDISGNSFSGTIPSSLFMLPSLIKLDLGT 344

Query:   115 NSIVGPIP-QSLGHLSNLRVLQIYNNKLNGTL--SEIHFSNLTKLSW-FRVGGNKLTLEV 170
             N   GP+   ++   SNL+ L I  N +NG +  S +    L+ LS  F   G  +   +
Sbjct:   345 NDFSGPLKIGNISSPSNLQELYIGENNINGPIPRSILKLVGLSALSLSFWDTGGIVDFSI 404

Query:   171 RHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLK 230
                 +   + + L   N  + S      H   H+ +L L +  +S  FP +FL++   L 
Sbjct:   405 FLQ-LKSLRSLDLSGINLNISSSH----HLPSHMMHLILSSCNISQ-FP-KFLENQTSLY 457

Query:   231 FLDLGLNQFHGQITD-LTKVTQLLFLSVHSNNMSGPLPLISSNLVYLDLSNNSFSGSVSH 289
              LD+  NQ  GQ+ + L ++  L ++++  N  SG L ++ + +     S+N FSG +  
Sbjct:   458 HLDISANQIEGQVPEWLWRLPTLRYVNIAQNAFSGELTMLPNPIYSFIASDNKFSGEIPR 517

Query:   290 YLCYRINEPKSLIGLKLKDNSLQGEIPDCW-MSYQNLEILELSNNKFTGKLPNXXXXXXX 348
              +C    E  +L+   L +N+  G IP C+ +S + L IL L NN  +G +P        
Sbjct:   518 AVC----EIGTLV---LSNNNFSGSIPPCFEISNKTLSILHLRNNSLSGVIPEESLHGYL 570

Query:   349 XXXXXXGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNF 408
                   G NRLSG  P SL NC+ L+ L+V EN      P+W  +    + +L+LRSN F
Sbjct:   571 RSLDV-GSNRLSGQFPKSLINCSYLQFLNVEENRINDTFPSWL-KSLPNLQLLVLRSNEF 628

Query:   409 HGPLPTRLCDLAF--LQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDG 466
             HGP+ +    L+F  L+  D+++N   G +P   +   G    +SF           + G
Sbjct:   629 HGPIFSPGDSLSFSKLRFFDISENRFSGVLPS--DYFVGWSVMSSFVDIIDNTPGFTVVG 686

Query:   467 DVILTEKASVVSEGEAIEYDEI---LNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSH 523
             D   +   SVV   + +  + +     + K  DVS N L   IP  +  LK    LN S+
Sbjct:   687 DDQESFHKSVVLTIKGLNMELVGSGFEIYKTIDVSGNRLEGDIPESIGILKELIVLNMSN 746

Query:   524 NSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQXXXXXXXXXXXXXXXXKLTGKIPSSTQ 583
             N+FTG IP S+  + +L+S+D S N+LSG IP                  L G IP  TQ
Sbjct:   747 NAFTGHIPPSLSNLSNLQSLDLSQNRLSGSIPGELGELTFLARMNFSYNMLEGPIPQGTQ 806

Query:   584 LQSFDASSFTGND-LCGAPLPKNCAENVSVSXXXXXXXXXXXXXHWLYVSIALGFVVGFG 642
             +QS ++SSF  N  LCGAPL K C                     W  V+ A+G+V G  
Sbjct:   807 IQSQNSSSFAENPGLCGAPLQKKCGGEEEEDKEKEEKDKGLS---W--VAAAIGYVPGLF 861

Query:   643 C--FIGPLI--FNRRW 654
             C   IG ++  + R W
Sbjct:   862 CGLAIGHILTSYKRDW 877

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2078102 RLP33 "receptor like protein 33" [Arabidopsis thaliana (taxid:3702)]

 Score = 584 (210.6 bits), Expect = 2.4e-56, P = 2.4e-56
 Identities = 200/682 (29%), Positives = 314/682 (46%)

Query:     4 LEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVH 63
             L  L L NNKL G +  E + NLT +S + LS N    G +P ++ SL  L+S +  G +
Sbjct:   209 LSILRLDNNKLSGNLPLEVI-NLTKLSEISLSHNQFT-GTLPPNITSLSILESFSASGNN 266

Query:    64 LSQEISEILNIFSGCVSIELESLDLRSSSISGHLT-DQLGQFKNLDNLDLANNSIVGPIP 122
                 I    ++F+   SI L  LD  ++ +SG L    +    NL  L L  N++ GPIP
Sbjct:   267 FVGTIPS--SLFT-IPSITLIFLD--NNQLSGTLEFGNISSPSNLLVLQLGGNNLRGPIP 321

Query:   123 QSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPP-FQ-L 180
              S+  L NLR L + +  + G +    FS+L  L    +  +  T  +  + +   F+ L
Sbjct:   322 TSISRLVNLRTLDLSHFNIQGQVDFNIFSHLKLLGNLYLSHSNTTTTIDLNAVLSCFKML 381

Query:   181 VALGFHNCYVGSRFPQWLHSQKH--LQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQ 238
             ++L     +V       +       +  LNL   G+++ FP   L++  Q++ LD+  N+
Sbjct:   382 ISLDLSGNHVLVTNKSSVSDPPLGLIGSLNLSGCGITE-FP-DILRTQRQMRTLDISNNK 439

Query:   239 FHGQITDLTKVTQLLFLSVHSNNMSG--------PLPLISSNLVYLDLSNNSFSGSVSHY 290
               GQ+     + QL ++ + +NN  G           +   ++ +   SNN+FSG +  +
Sbjct:   440 IKGQVPSWL-LLQLEYMHISNNNFIGFERSTKLEKTVVPKPSMKHFFGSNNNFSGKIPSF 498

Query:   291 LCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQN-LEILELSNNKFTGKLPNXXXXXXXX 349
             +C      +SLI L L +N+  G IP C   +++ L  L L  N+ +G LP         
Sbjct:   499 IC----SLRSLIILDLSNNNFSGAIPPCVGKFKSTLSDLNLRRNRLSGSLPKTIIKSLRS 554

Query:   350 XXXXXGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFH 409
                    N L G +P SL + + LE L+V  N      P W      ++ VL+LRSN FH
Sbjct:   555 LDVSH--NELEGKLPRSLIHFSTLEVLNVESNRINDTFPFWLSS-LKKLQVLVLRSNAFH 611

Query:   410 GPL-PTRLCDLAFLQILDLADNNLFGTIPK-CINNITGMVAAN-SFTRSSQQYLPLPLDG 466
             G +  TR   L   +I+D++ N+  GT+P  C    TGM +   +  R +++Y+     G
Sbjct:   612 GRIHKTRFPKL---RIIDISRNHFNGTLPSDCFVEWTGMHSLEKNEDRFNEKYM-----G 663

Query:   467 DVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSF 526
                  +   ++++G  +E   IL +    D S N     IP  +  LK    LN S N F
Sbjct:   664 SGYYHDSMVLMNKGLEMELVRILKIYTALDFSGNKFEGEIPRSIGLLKELHILNLSSNGF 723

Query:   527 TGRIPESIGAMRSLESIDFSVNQLSGEIPQXXXXXXXXXXXXXXXXKLTGKIPSSTQLQS 586
             TG IP S+G +R LES+D S N+LSGEIPQ                +L G++P  TQ ++
Sbjct:   724 TGHIPSSMGNLRELESLDVSRNKLSGEIPQELGNLSYLAYMNFSHNQLVGQVPGGTQFRT 783

Query:   587 FDASSFTGN-DLCGAPLPKNCAENVSVSXXXXXXXXXXXXXHWLYVSIALGFVVGF--GC 643
               ASSF  N  LCG PL +    +                  W  ++ A+GF  G   G 
Sbjct:   784 QSASSFEENLGLCGRPLEECRVVHEPTPSGESETLESEQVLSW--IAAAIGFTPGIVLGL 841

Query:   644 FIGPLIFNR--RWRYNYYHFLN 663
              IG ++ +   RW +   +  N
Sbjct:   842 TIGHIVLSSKPRWFFKVLYINN 863

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006457 "protein folding" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2173777 RLP54 "receptor like protein 54" [Arabidopsis thaliana (taxid:3702)]

 Score = 578 (208.5 bits), Expect = 4.2e-56, P = 4.2e-56
 Identities = 202/686 (29%), Positives = 314/686 (45%)

Query:     1 FIHLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSI--- 57
             F HL YL L  N    +      G LT +  LDLS N G  G +P S+++L  L ++   
Sbjct:   113 FQHLRYLDLSENHFDSSPIPSGFGRLTYLESLDLSKN-GFIGEVPSSISNLSRLTNLDLS 171

Query:    58 ---------NLRGVHLSQEISEILNIFSGCVSIEL------ESLDLRSSSISGHLTD-QL 101
                      NL  + L + I    N FSG +   L       SL+LR + +S  L +   
Sbjct:   172 YNKLTGGIPNLHSLTLLENIDLSYNKFSGAIPSYLFTMPFLVSLNLRQNHLSDPLENINY 231

Query:   102 GQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSE--IHFSNLTKLSWF 159
                  L  LD+A N +   I + +  L+NL  + +   K   T +   + F +L +L   
Sbjct:   232 SATSKLLILDMAYNLMSHRILEPISKLANLIQIDLSFQKTPYTFNFDFLLFKSLVRLD-- 289

Query:   160 RVGGNKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFP 219
              + GN +++           L  L   +C + + FP ++   + L +L++ N+ +    P
Sbjct:   290 -LSGNSVSVVGTGSE----NLTHLDLSSCNI-TEFPMFIKDLQRLWWLDISNNRIKGKVP 343

Query:   220 IRFLKSAFQLKFLDLGLNQFHGQITDLTKV---TQLLFLSVHSNNMSGPLPLISSNLVYL 276
                L +   +  ++L  N F   +    K+   + +  L + SN   G  P+I   +  +
Sbjct:   344 -ELLWTLPSMLHVNLSRNSFDS-LEGTPKIILNSSISELDLSSNAFKGSFPIIPPYVNIM 401

Query:   277 DLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQ-NLEILELSNNKF 335
               SNN F+G +    C R     SL  L L +N+  G IP C  +    LE L+LSNN  
Sbjct:   402 AASNNYFTGGIPLIFCKRYR--LSL--LDLSNNNFSGTIPRCLTNVSLGLEALKLSNNSL 457

Query:   336 TGKLPNXXXXXXXXXXXXXGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERF 395
             TG+LP+             G N++SG +P SL NCT L+ L+V  N      P W  +  
Sbjct:   458 TGRLPDIEDRLVLLDV---GHNQISGKLPRSLVNCTTLKFLNVEGNHINDTFPFWL-KAL 513

Query:   396 SRMVVLILRSNNFHGPLPTRLCDLAF--LQILDLADNNLFGTIPKCINNITGMVAANSFT 453
             +R+ +++LRSN FHGP+ +    L+F  L+I+D++ N+  G++P+  N      A     
Sbjct:   514 TRLEIIVLRSNRFHGPISSPEVSLSFTALRIIDISRNSFNGSLPQ--NYFANWSAP--LV 569

Query:   454 RSSQQYLPLPLDGDVILTEKASVVS--------EGEAIEYDEILNLVKETDVSRNNLTKS 505
              + Q Y      GD     +  + S        +G +IE  +I +     D S N+    
Sbjct:   570 NTPQGYRWPEYTGDEHSKYETPLWSYPSIHLRIKGRSIELGKIPDTYTSIDFSGNSFEGQ 629

Query:   506 IPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQXXXXXXXXX 565
             IP  + +LK+   L+ S+NSFTGRIP S+  ++ LES+D S N++SG IPQ         
Sbjct:   630 IPESIGDLKSLIVLDLSNNSFTGRIPSSLAKLKQLESLDLSQNRISGNIPQELRELTFLG 689

Query:   566 XXXXXXXKLTGKIPSSTQLQSFDASSFTGN-DLCGAPLPKNCAENVSV-SXXXXXXXXXX 623
                    +LTG+IP STQ+     SSF GN +LCG PL ++C     V S          
Sbjct:   690 YVNMSHNRLTGQIPQSTQVGGQPKSSFEGNINLCGLPLQESCLRGNGVPSTPHTQEQELP 749

Query:   624 XXXHWL-YVSIALGFVVG--FGCFIG 646
                H L + + A+G+  G  FG  IG
Sbjct:   750 KQEHALNWKAAAIGYGPGVLFGLAIG 775

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2046397 RLP22 "receptor like protein 22" [Arabidopsis thaliana (taxid:3702)]

 Score = 570 (205.7 bits), Expect = 2.9e-55, P = 2.9e-55
 Identities = 188/599 (31%), Positives = 268/599 (44%)

Query:    83 LESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLN 142
             L  LDL  + ++G         K L+NL+L NN     I   +  L NLR L +     +
Sbjct:     4 LSYLDLSENHLTGSFEISNSSSK-LENLNLGNNHFETEIIDPVLRLVNLRYLSLSFLNTS 62

Query:   143 GTLSEIHFSNLTKLSWFRVGGNKLTL-EVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQ 201
               +    FS L  L+   + GN LTL  V  D   P  +  L    C + S FP++L S 
Sbjct:    63 HPIDLSIFSPLQSLTHLDLHGNSLTLTSVYSDIDFPKNMEILLLSGCNI-SEFPRFLKSL 121

Query:   202 KHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQF---HGQITDLTKVTQLLFLSVH 258
             K L YL+L ++ +    P  ++ S   L  LDL  N F   +G +  +   + +  L + 
Sbjct:   122 KKLWYLDLSSNRIKGNVP-DWIWSLPLLVSLDLSNNSFTGFNGSLDHVLANSSVQVLDIA 180

Query:   259 SNNMSGPLPLISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDC 318
              N+  G  P    +++ L   NNSF+G +   +C R     SL  L L  N+  G IP C
Sbjct:   181 LNSFKGSFPNPPVSIINLSAWNNSFTGDIPLSVCNRT----SLDVLDLSYNNFTGSIPPC 236

Query:   319 WMSYQNLEILELSNNKFTGKLPNXXXXXXXXXXXXXGKNRLSGTIPVSLKNCTALESLDV 378
              M   N  I+ L  NK  G +P+             G N+L+G +P SL NC+ +  L V
Sbjct:   237 -MG--NFTIVNLRKNKLEGNIPDEFYSGALTQTLDVGYNQLTGELPRSLLNCSFIRFLSV 293

Query:   379 GENEFVGNIPTWTGERFSRMVVLILRSNNFHGPL--PTRLCDLAF--LQILDLADNNLFG 434
               N    + P W  +    + VL LRSN+FHGP+  P     LAF  LQIL+++ N   G
Sbjct:   294 DHNRINDSFPLWL-KALPNLKVLTLRSNSFHGPMSPPDDQSSLAFPKLQILEISHNRFTG 352

Query:   435 TIPKCINNITGMVAANSFTRSSQQYLPL-PLDGDVILTEKA-SVVSEGEAIEYDEILNLV 492
             ++P    N     +  S     ++ L +     D  + E    +  +G  +E  ++L   
Sbjct:   353 SLP---TNYFANWSVKSLKMYDEERLYMGDYSSDRFVYEDTLDLQYKGLYMEQGKVLTFY 409

Query:   493 KETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSG 552
                D S N L   IP  +  LK   +LN S+NSFTG IP S   +  LES+D S N+LSG
Sbjct:   410 SAIDFSGNKLEGEIPESIGLLKTLIALNLSNNSFTGHIPMSFANVTELESLDLSGNKLSG 469

Query:   553 EIPQXXXXXXXXXXXXXXXXKLTGKIPSSTQLQSFDASSFTGND-LCGAPLPKNCAENVS 611
             EIPQ                +LTGKIP  TQ+     SSF GN  LCG PL ++C    +
Sbjct:   470 EIPQELGRLSYLAYIDVSDNQLTGKIPQGTQIIGQPKSSFEGNSGLCGLPLEESCLREDA 529

Query:   612 VSXXXXXXXXXXXXXHWLYVSIALGFVVGFGCFIGPLI--FNRRWRYNYYHFLNRLENI 668
              S              W   +I  G  V FG  IG ++  +   W +   +  NRL  I
Sbjct:   530 PSTQEPEEEEEEIL-EWRAAAIGYGPGVLFGLAIGHVVALYKPGW-FIKNNGQNRLRGI 586

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2096349 RLP31 "receptor like protein 31" [Arabidopsis thaliana (taxid:3702)]

 Score = 572 (206.4 bits), Expect = 4.5e-55, P = 4.5e-55
 Identities = 197/678 (29%), Positives = 304/678 (44%)

Query:     4 LEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVH 63
             LEYL   +NK  G I      NLT +  ++L  N   E  +P  M+   NL   N     
Sbjct:   182 LEYLIFSHNKFSGNIPV-TFSNLTKLLVVNL-YNNSFESMLPLDMSGFQNLDYFN----- 234

Query:    64 LSQEISEILNIFSGCVSIELESL-DLRSSSISGHLTDQLGQFKN-------LDNLDLANN 115
                 + E  N FSG +   L ++  LR +++ G++     +F+N       L  L L+ N
Sbjct:   235 ----VGE--NSFSGTLPKSLFTIPSLRWANLEGNMFKGPIEFRNMYSPSTRLQYLFLSQN 288

Query:   116 SIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRH-DW 174
                GPIP +L    NL  L +  N L G+     F+ +  L    + GN L   V   + 
Sbjct:   289 KFDGPIPDTLSQYLNLIELDLSFNNLTGSFPTFLFT-IPTLERVNLEGNHLKGPVEFGNM 347

Query:   175 IPPFQLVALGF-HNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLD 233
                  L  L F  N + GS  P+ +    +L+ L+L  +      P R +    +L++  
Sbjct:   348 SSSSSLKFLNFAQNEFNGS-IPESVSQYLNLEELHLSFNNFIGTIP-RSISKLAKLEYFC 405

Query:   234 LGLNQFHGQITD-LTKVTQLLFLSVHSNNMSGPLP--LISSNLVYLDLSNNSFSGSVSHY 290
             L  N   G++   L ++T ++ LS +S N  G     L  + + +LDLS+NSF G   H+
Sbjct:   406 LEDNNMVGEVPSWLWRLT-MVALSNNSFNSFGESSEGLDETQVQWLDLSSNSFQGPFPHW 464

Query:   291 LCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQ-NLEILELSNNKFTGKLPNXXXXXXXX 349
             +C    + +SL  L + DN   G IP C  S+  +L  L L NN  +G LP+        
Sbjct:   465 IC----KLRSLEILIMSDNRFNGSIPPCLSSFMVSLTDLILRNNSLSGPLPDIFVNATKL 520

Query:   350 XXXXXGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFH 409
                   +N+L G +P SL +C A++ L+V  N+     P+W G   S + VLILRSN F+
Sbjct:   521 LSLDVSRNKLDGVLPKSLIHCKAMQLLNVRSNKIKDKFPSWLGSLPS-LHVLILRSNEFY 579

Query:   410 GPLPTRLCDLAF--LQILDLADNNLFGTIPKC-------INNITGMVAANSFTRSSQQYL 460
             G L      + F  L+++D++ N+L GT+P         ++ +TG      F  S   Y+
Sbjct:   580 GTLYQPHASIGFQSLRVIDVSHNDLIGTLPSFYFSSWREMSRLTG--EDGDFRLSEAPYM 637

Query:   461 PLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLN 520
                L+      +   +V++G   E+  I    K  + S N  + +IP  +  LK  + LN
Sbjct:   638 GKVLNATAFFVDSMEIVNKGVETEFKRINEENKVINFSGNRFSGNIPESIGLLKELRHLN 697

Query:   521 FSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQXXXXXXXXXXXXXXXXKLTGKIPS 580
              S N+FTG IP+S+  +  LE++D S+NQLSG+IPQ                 L G +P 
Sbjct:   698 LSSNAFTGNIPQSLANLMKLEALDLSLNQLSGQIPQGLGSLSFMSTMNFSYNFLEGPVPK 757

Query:   581 STQLQSFDASSFTGNDLCGAPLPKNCAE-----NVSVSXXXXXXXXXXXXXHWLYVSIAL 635
             STQ Q  + S+F  N      L + C E     N                 +W+   IA 
Sbjct:   758 STQFQGQNCSAFMENPKLNG-LEEICRETDRVPNPKPQESKDLSEPEEHVINWIAAGIAY 816

Query:   636 GFVVGFGCFIGPLIFNRR 653
             G  V  G  IG +  + +
Sbjct:   817 GPGVVCGLVIGHIFLSHK 834

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2087253 RLP39 "AT3G24900" [Arabidopsis thaliana (taxid:3702)]

 Score = 572 (206.4 bits), Expect = 5.8e-55, P = 5.8e-55
 Identities = 187/617 (30%), Positives = 293/617 (47%)

Query:     4 LEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVH 63
             LE L + +N   G +    + NLT ++ L L LN    G +P  + +L  L  ++L   H
Sbjct:   224 LELLDVSSNSFFGQVPP-TISNLTQLTELYLPLNDFT-GSLPL-VQNLTKLSILHLSDNH 280

Query:    64 LSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKN-LDNLDLANNSIVGPIP 122
              S  I    ++F+      L  LDL  +++SG +        + L+NL+L  N   G I 
Sbjct:   281 FSGTIPS--SLFTMPF---LSYLDLGGNNLSGSIEVPNSSLSSRLENLNLGENHFEGKII 335

Query:   123 QSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLT-LEVRHDWIPPFQLV 181
             + +  L NL+ L +     +  ++   FS+L  L    + G  ++   +  D   P  L 
Sbjct:   336 EPISKLINLKELHLSFLNTSYPINLKLFSSLKYLLLLDLSGGWISQASLSLDSYIPSTLE 395

Query:   182 ALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHG 241
             AL   +C + S FP  L +  +L+++ L  + +S   P  +L S  +L  + +  N F G
Sbjct:   396 ALLLKHCNI-SVFPNILKTLPNLEFIALSTNKISGKIP-EWLWSLPRLSSVFIEENLFTG 453

Query:   242 --QITDLTKVTQLLFLSVHSNNMSGPLPLISSNLVYLDLSNNSFSGSVSHYLCYRINEPK 299
                 +++   + +  L++ SNN+ G LP +  ++ Y    NN + G +   +C R    +
Sbjct:   454 FEGSSEILVNSSVRILNLLSNNLEGALPHLPLSVNYFSARNNRYGGDIPLSICSR----R 509

Query:   300 SLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNXXXXXXXXXXXXXGKNRL 359
             SL+ L L  N+  G IP C     N  IL L  N   G +P+             G NRL
Sbjct:   510 SLVFLDLSYNNFTGPIPPC---PSNFLILNLRKNNLEGSIPDTYYADAPLRSLDVGYNRL 566

Query:   360 SGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPL-PTRLCD 418
             +G +P SL NC+AL+ L V  N      P ++ +   ++ VLIL SNNF+GPL P     
Sbjct:   567 TGKLPRSLLNCSALQFLSVDHNGIKDTFP-FSLKALPKLQVLILHSNNFYGPLSPPNQGS 625

Query:   419 LAF--LQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLD----GDVILT- 471
             L F  L+IL++A N   G++P    +      A+S T +  Q L +  +    G    T 
Sbjct:   626 LGFPELRILEIAGNKFTGSLPP---DFFENWKASSLTMNEDQGLYMVYNKVVYGTYYFTS 682

Query:   472 -EKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRI 530
              E   +  +G ++E + +L+     D S N L   IP  +  LKA  +LN S+N+FTG I
Sbjct:   683 LEAIDLQYKGLSMEQNRVLSSSATIDFSGNRLEGEIPESIGLLKALIALNLSNNAFTGHI 742

Query:   531 PESIGAMRSLESIDFSVNQLSGEIPQXXXXXXXXXXXXXXXXKLTGKIPSSTQLQSFDAS 590
             P S+  ++ +ES+D S NQLSG IP                 +L G+IP  TQ+     S
Sbjct:   743 PLSLANLKKIESLDLSSNQLSGTIPNGIGTLSFLAYMNVSHNQLNGEIPQGTQITGQPKS 802

Query:   591 SFTGN-DLCGAPLPKNC 606
             SF GN  LCG PL ++C
Sbjct:   803 SFEGNAGLCGLPLQESC 819

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2086979 RLP42 "receptor like protein 42" [Arabidopsis thaliana (taxid:3702)]

 Score = 568 (205.0 bits), Expect = 1.7e-54, P = 1.7e-54
 Identities = 196/670 (29%), Positives = 305/670 (45%)

Query:     4 LEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVH 63
             LE L + +N   G +    + NLT ++ L L LN    G +P  + +L  L  ++L G H
Sbjct:   223 LEVLDVSSNSFFGQVPP-TISNLTQLTELYLPLNDFT-GSLPL-VQNLTKLSILHLFGNH 279

Query:    64 LSQEISEILNIFSGCVSIELESLDLRSSSISGHL-TDQLGQFKNLDNLDLANNSIVGPIP 122
              S  I    ++F+      L S+ L  +++SG +          L++L L  N + G I 
Sbjct:   280 FSGTIPS--SLFTMPF---LSSIYLNKNNLSGSIEVPNSSSSSRLEHLYLGKNHL-GKIL 333

Query:   123 QSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLT-LEVRHDWIPPFQLV 181
             + +  L NL+ L +     +  +    FS+L  L    + G+ ++   +  D   P  L 
Sbjct:   334 EPIAKLVNLKELDLSFLNTSHPIDLSLFSSLKSLLLLDLSGDWISKASLTLDSYIPSTLE 393

Query:   182 ALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLK--FL-DLGLNQ 238
              L   +C + S FP    +  +L+Y+ L N+ +S  FP  +L S  +L   F+ D  L  
Sbjct:   394 VLRLEHCDI-SEFPNVFKTLHNLEYIALSNNRISGKFP-EWLWSLPRLSSVFITDNLLTG 451

Query:   239 FHGQITDLTKVTQLLFLSVHSNNMSGPLPLISSNLVYLDLSNNSFSGSVSHYLCYRINEP 298
             F G    L   + +  LS+ +N++ G LP +  ++ Y    +N F G +   +C R    
Sbjct:   452 FEGSSEVLVN-SSVQILSLDTNSLEGALPHLPLSINYFSAIDNRFGGDIPLSICNR---- 506

Query:   299 KSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNXXXXXXXXXXXXXGKNR 358
              SL  L L  N+  G+IP C     NL  L+L  N   G +P+             G NR
Sbjct:   507 SSLDVLDLSYNNFSGQIPPC---LSNLLYLKLRKNNLEGSIPDKYYVDTPLRSFDVGYNR 563

Query:   359 LSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPL-PTRLC 417
             L+G +P SL NC+AL+ L V  N      P +  +   ++ VL+L SN F+GPL P    
Sbjct:   564 LTGKLPRSLINCSALQFLSVDHNGIKDTFPFYL-KALPKLQVLLLSSNEFYGPLSPPNQG 622

Query:   418 DLAF--LQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLP--LDGDVILT-- 471
              L F  L+IL++A N L G++P     +    ++++       Y+     + G+  LT  
Sbjct:   623 PLGFPELRILEIAGNKLTGSLPPDFF-VNWKASSHTMNEDLGLYMVYSKVIFGNYHLTYY 681

Query:   472 EKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIP 531
             E   +  +G ++E + +L      D+S N L   IP  +  LKA  +LN S+N+FTG IP
Sbjct:   682 ETIDLRYKGLSMEQENVLTSSATIDLSGNRLEGEIPESLGLLKALIALNLSNNAFTGHIP 741

Query:   532 ESIGAMRSLESIDFSVNQLSGEIPQXXXXXXXXXXXXXXXXKLTGKIPSSTQLQSFDASS 591
              S+  ++ +ES+D S NQLSG IP                 +L G+IP  TQ+     SS
Sbjct:   742 LSLANLKKIESLDLSSNQLSGTIPNGLGTLSFLAYMNVSHNQLNGEIPQGTQITGQPKSS 801

Query:   592 FTGN-DLCGAPLPKNC----AENVSVSXXXXXXXXXXXXXHWLYVSIALGFVVGFGCFIG 646
             F GN  LCG PL ++C    A                   +W  V+I  G  V  G  I 
Sbjct:   802 FEGNAGLCGFPLQESCFGTNAPPAQKPKEEEEAEEDEQELNWKAVAIGYGVGVLLGLAIA 861

Query:   647 PLI--FNRRW 654
              LI  +   W
Sbjct:   862 QLIASYKPEW 871

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00031679 hypothetical protein (1024 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	677
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-53
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-47
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-39
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-38
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-37
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-28
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-20
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	9e-19
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	6e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	3e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	9e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.001
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	0.002
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	0.003
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	0.004
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	0.004
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.004

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  197 bits (502), Expect = 3e-53
 Identities = 161/566 (28%), Positives = 276/566 (48%), Gaps = 75/566 (13%)

Query: 25  NLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVSIELE 84
           N + +  +DLS      G+I  ++  L  +++INL    LS  I +  +IF+   S  L 
Sbjct: 67  NSSRVVSIDLS-GKNISGKISSAIFRLPYIQTINLSNNQLSGPIPD--DIFTTSSS--LR 121

Query: 85  SLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGT 144
            L+L +++ +G +    G   NL+ LDL+NN + G IP  +G  S+L+VL +  N L G 
Sbjct: 122 YLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGK 179

Query: 145 LSEIHFSNLTKLSWFRVGGNKLTLEVRHDW--IPPFQLVALGFHNCYVGSRFPQWLHSQK 202
           +     +NLT L +  +  N+L  ++  +   +   + + LG++N  +    P  +    
Sbjct: 180 IP-NSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNN--LSGEIPYEIGGLT 236

Query: 203 HLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQI-TDLTKVTQLLFLSVHSNN 261
            L +L+L+ + ++   P   L +   L++L L  N+  G I   +  + +L+ L +  N+
Sbjct: 237 SLNHLDLVYNNLTGPIPSS-LGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNS 295

Query: 262 MSGPLP-LISS--NLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDC 318
           +SG +P L+    NL  L L +N+F+G +   L    + P+  + L+L  N   GEIP  
Sbjct: 296 LSGEIPELVIQLQNLEILHLFSNNFTGKIPVALT---SLPRLQV-LQLWSNKFSGEIPKN 351

Query: 319 WMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDV 378
              + NL +L+LS N  TG++P  L S  +L  L+L  N L G IP SL  C +L  + +
Sbjct: 352 LGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRL 411

Query: 379 GENEFVGNIPTWTGERFSRMVV---LILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGT 435
            +N F G +P+     F+++ +   L + +NN  G + +R  D+  LQ+L LA N  FG 
Sbjct: 412 QDNSFSGELPS----EFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGG 467

Query: 436 IPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKET 495
           +P                 S +                                  ++  
Sbjct: 468 LP-------------DSFGSKR----------------------------------LENL 480

Query: 496 DVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIP 555
           D+SRN  + ++P ++ +L     L  S N  +G IP+ + + + L S+D S NQLSG+IP
Sbjct: 481 DLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIP 540

Query: 556 QSMSNLMSLNHLNLSNNKLTGKIPSS 581
            S S +  L+ L+LS N+L+G+IP +
Sbjct: 541 ASFSEMPVLSQLDLSQNQLSGEIPKN 566

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  178 bits (454), Expect = 4e-47
 Identities = 168/593 (28%), Positives = 244/593 (41%), Gaps = 160/593 (26%)

Query: 3   HLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGV 62
           +++ ++L NN+L G I  +     +S+  L+LS N    G IPR                
Sbjct: 94  YIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLS-NNNFTGSIPRGSIPN----------- 141

Query: 63  HLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIP 122
                               LE+LDL ++ +SG + + +G F +L  LDL  N +VG IP
Sbjct: 142 --------------------LETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIP 181

Query: 123 QSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQLVA 182
            SL +L++L  L + +N+L G +       +  L W  +G N L+ E+      P+++  
Sbjct: 182 NSLTNLTSLEFLTLASNQLVGQIPR-ELGQMKSLKWIYLGYNNLSGEI------PYEIGG 234

Query: 183 LGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQ 242
           L                                             L  LDL  N   G 
Sbjct: 235 LT-------------------------------------------SLNHLDLVYNNLTGP 251

Query: 243 I-TDLTKVTQLLFLSVHSNNMSGPLPLISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSL 301
           I + L  +  L +L ++ N +SGP+P    +L                         + L
Sbjct: 252 IPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSL-------------------------QKL 286

Query: 302 IGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSG 361
           I L L DNSL GEIP+  +  QNLEIL L +N FTGK+P +L SL  L  L L  N+ SG
Sbjct: 287 ISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSG 346

Query: 362 TIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAF 421
            IP +L     L  LD+  N   G IP         +  LIL SN+  G +P  L     
Sbjct: 347 EIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSS-GNLFKLILFSNSLEGEIPKSLGACRS 405

Query: 422 LQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGE 481
           L+ + L DN+  G +P              FT+                           
Sbjct: 406 LRRVRLQDNSFSGELPS------------EFTK--------------------------- 426

Query: 482 AIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLE 541
                  L LV   D+S NNL   I     ++ + Q L+ + N F G +P+S G+ R LE
Sbjct: 427 -------LPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKR-LE 478

Query: 542 SIDFSVNQLSGEIPQSMSNLMSLNHLNLSNNKLTGKIP----SSTQLQSFDAS 590
           ++D S NQ SG +P+ + +L  L  L LS NKL+G+IP    S  +L S D S
Sbjct: 479 NLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLS 531

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  154 bits (391), Expect = 5e-39
 Identities = 155/449 (34%), Positives = 222/449 (49%), Gaps = 35/449 (7%)

Query: 1   FIHLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLR 60
           F  L+ L L  N L G I + +L NLTS+  L L+ N    G+IPR +  + +LK I L 
Sbjct: 163 FSSLKVLDLGGNVLVGKIPN-SLTNLTSLEFLTLASNQ-LVGQIPRELGQMKSLKWIYLG 220

Query: 61  GVHLSQEI-SEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVG 119
             +LS EI  EI  + S      L  LDL  ++++G +   LG  KNL  L L  N + G
Sbjct: 221 YNNLSGEIPYEIGGLTS------LNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSG 274

Query: 120 PIPQSLGHLSNLRVLQIYNNKLNGTLSE--IHFSNLTKLSWFRVGGNKLT--LEVRHDWI 175
           PIP S+  L  L  L + +N L+G + E  I   NL  L  F    N  T  + V    +
Sbjct: 275 PIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLF---SNNFTGKIPVALTSL 331

Query: 176 PPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLG 235
           P  Q++ L + N + G   P+ L    +L  L+L  + ++   P     S    K L L 
Sbjct: 332 PRLQVLQL-WSNKFSGE-IPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFK-LILF 388

Query: 236 LNQFHGQI-TDLTKVTQLLFLSVHSNNMSGPLP--LISSNLVY-LDLSNNSFSGSVSHYL 291
            N   G+I   L     L  + +  N+ SG LP       LVY LD+SNN+  G ++   
Sbjct: 389 SNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINS-- 446

Query: 292 CYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIW 351
             R  +  SL  L L  N   G +PD + S + LE L+LS N+F+G +P  LGSL+ L+ 
Sbjct: 447 --RKWDMPSLQMLSLARNKFFGGLPDSFGS-KRLENLDLSRNQFSGAVPRKLGSLSELMQ 503

Query: 352 LLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLI---LRSNNF 408
           L L +N+LSG IP  L +C  L SLD+  N+  G IP      FS M VL    L  N  
Sbjct: 504 LKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPA----SFSEMPVLSQLDLSQNQL 559

Query: 409 HGPLPTRLCDLAFLQILDLADNNLFGTIP 437
            G +P  L ++  L  ++++ N+L G++P
Sbjct: 560 SGEIPKNLGNVESLVQVNISHNHLHGSLP 588

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  152 bits (385), Expect = 2e-38
 Identities = 127/405 (31%), Positives = 181/405 (44%), Gaps = 70/405 (17%)

Query: 204 LQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQI-TDLTKVTQLLFLSVHSNNM 262
           L+YLNL N+  +   P   +     L+ LDL  N   G+I  D+   + L  L +  N +
Sbjct: 120 LRYLNLSNNNFTGSIPRGSI---PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVL 176

Query: 263 SGPLPLISSNLV---YLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCW 319
            G +P   +NL    +L L++N   G +   L     + KSL  + L  N+L GEIP   
Sbjct: 177 VGKIPNSLTNLTSLEFLTLASNQLVGQIPREL----GQMKSLKWIYLGYNNLSGEIPYEI 232

Query: 320 MSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVG 379
               +L  L+L  N  TG +P+SLG+L +L +L L +N+LSG IP S+ +   L SLD+ 
Sbjct: 233 GGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLS 292

Query: 380 ENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKC 439
           +N   G IP    +    + +L L SNNF G +P  L  L  LQ+L L  N   G IPK 
Sbjct: 293 DNSLSGEIPELVIQ-LQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKN 351

Query: 440 I---NNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETD 496
           +   NN+T +                                                 D
Sbjct: 352 LGKHNNLTVL-------------------------------------------------D 362

Query: 497 VSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQ 556
           +S NNLT  IP  + +      L    NS  G IP+S+GA RSL  +    N  SGE+P 
Sbjct: 363 LSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPS 422

Query: 557 SMSNLMSLNHLNLSNNKLTGKIPS------STQLQSFDASSFTGN 595
             + L  +  L++SNN L G+I S      S Q+ S   + F G 
Sbjct: 423 EFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGG 467

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  149 bits (379), Expect = 1e-37
 Identities = 132/392 (33%), Positives = 200/392 (51%), Gaps = 22/392 (5%)

Query: 4   LEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVH 63
           L+++ L  N L G I  E +G LTS++ LDL  N    G IP S+ +L NL+ + L    
Sbjct: 214 LKWIYLGYNNLSGEIPYE-IGGLTSLNHLDLVYNN-LTGPIPSSLGNLKNLQYLFLYQNK 271

Query: 64  LSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQ 123
           LS  I    +IFS     +L SLDL  +S+SG + + + Q +NL+ L L +N+  G IP 
Sbjct: 272 LSGPIPP--SIFS---LQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPV 326

Query: 124 SLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTK---LSWFRVGGNKLTLEVRHDWIPPFQL 180
           +L  L  L+VLQ+++NK +G +      NL K   L+   +  N LT E+         L
Sbjct: 327 ALTSLPRLQVLQLWSNKFSGEIP----KNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNL 382

Query: 181 VALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFH 240
             L   +  +    P+ L + + L+ + L ++  S   P  F K    + FLD+  N   
Sbjct: 383 FKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPL-VYFLDISNNNLQ 441

Query: 241 GQITDLT-KVTQLLFLSVHSNNMSGPLP--LISSNLVYLDLSNNSFSGSVSHYLCYRINE 297
           G+I      +  L  LS+  N   G LP    S  L  LDLS N FSG+V      ++  
Sbjct: 442 GRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPR----KLGS 497

Query: 298 PKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKN 357
              L+ LKL +N L GEIPD   S + L  L+LS+N+ +G++P S   +  L  L L +N
Sbjct: 498 LSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQN 557

Query: 358 RLSGTIPVSLKNCTALESLDVGENEFVGNIPT 389
           +LSG IP +L N  +L  +++  N   G++P+
Sbjct: 558 QLSGEIPKNLGNVESLVQVNISHNHLHGSLPS 589

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  121 bits (306), Expect = 2e-28
 Identities = 95/303 (31%), Positives = 144/303 (47%), Gaps = 26/303 (8%)

Query: 278 LSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTG 337
           LSN + S  V  +     N    ++ + L   ++ G+I         ++ + LSNN+ +G
Sbjct: 48  LSNWNSSADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSG 107

Query: 338 KLPNSLGSLT-SLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFS 396
            +P+ + + + SL +L L  N  +G+IP        LE+LD+  N   G IP   G  FS
Sbjct: 108 PIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPN--LETLDLSNNMLSGEIPNDIGS-FS 164

Query: 397 RMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSS 456
            + VL L  N   G +P  L +L  L+ L LA N L G IP+ +  +            S
Sbjct: 165 SLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQM-----------KS 213

Query: 457 QQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKAT 516
            +++ L  +           +S     E   + +L    D+  NNLT  IP  + NLK  
Sbjct: 214 LKWIYLGYNN----------LSGEIPYEIGGLTSL-NHLDLVYNNLTGPIPSSLGNLKNL 262

Query: 517 QSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLSNNKLTG 576
           Q L    N  +G IP SI +++ L S+D S N LSGEIP+ +  L +L  L+L +N  TG
Sbjct: 263 QYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTG 322

Query: 577 KIP 579
           KIP
Sbjct: 323 KIP 325

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 94.5 bits (235), Expect = 6e-20
 Identities = 68/207 (32%), Positives = 97/207 (46%), Gaps = 26/207 (12%)

Query: 390 WTG---ERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGM 446
           W G      SR+V + L   N  G + + +  L ++Q ++L++N L G IP  I      
Sbjct: 60  WQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDI------ 113

Query: 447 VAANSFTRSSQQYL---------PLPLDGDVILTEKASV---VSEGEAIEYDEILNLVKE 494
                 T SS +YL          +P  G +   E   +   +  GE        + +K 
Sbjct: 114 ----FTTSSSLRYLNLSNNNFTGSIP-RGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKV 168

Query: 495 TDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEI 554
            D+  N L   IP  +TNL + + L  + N   G+IP  +G M+SL+ I    N LSGEI
Sbjct: 169 LDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEI 228

Query: 555 PQSMSNLMSLNHLNLSNNKLTGKIPSS 581
           P  +  L SLNHL+L  N LTG IPSS
Sbjct: 229 PYEIGGLTSLNHLDLVYNNLTGPIPSS 255

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 90.3 bits (224), Expect = 9e-19
 Identities = 51/155 (32%), Positives = 78/155 (50%), Gaps = 18/155 (11%)

Query: 506 IPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLN 565
           IP +++ L+  QS+N S NS  G IP S+G++ SLE +D S N  +G IP+S+  L SL 
Sbjct: 434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLR 493

Query: 566 HLNLSNNKLTGKIPSSTQLQSFDASSFTGND---LCGAPLPKNCAENVSVSEDENGDEDE 622
            LNL+ N L+G++P++   +    +SF   D   LCG P  + C  ++SV          
Sbjct: 494 ILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACGPHLSVGAK------- 546

Query: 623 DEVDHWLYVSIALGFVVGFGCFIGPLIFNRRWRYN 657
                   + IA G  V F   +   +   + R N
Sbjct: 547 --------IGIAFGVSVAFLFLVICAMCWWKRRQN 573

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 70.6 bits (173), Expect = 1e-12
 Identities = 36/92 (39%), Positives = 51/92 (55%)

Query: 303 GLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGT 362
           GL L +  L+G IP+     ++L+ + LS N   G +P SLGS+TSL  L L  N  +G+
Sbjct: 422 GLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 363 IPVSLKNCTALESLDVGENEFVGNIPTWTGER 394
           IP SL   T+L  L++  N   G +P   G R
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVPAALGGR 513

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 66.0 bits (161), Expect = 3e-11
 Identities = 37/92 (40%), Positives = 51/92 (55%), Gaps = 4/92 (4%)

Query: 276 LDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKF 335
           L L N    G    ++   I++ + L  + L  NS++G IP    S  +LE+L+LS N F
Sbjct: 423 LGLDNQGLRG----FIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF 478

Query: 336 TGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSL 367
            G +P SLG LTSL  L L  N LSG +P +L
Sbjct: 479 NGSIPESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 59.4 bits (144), Expect = 4e-09
 Identities = 32/82 (39%), Positives = 42/82 (51%), Gaps = 1/82 (1%)

Query: 519 LNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLSNNKLTGKI 578
           L   +    G IP  I  +R L+SI+ S N + G IP S+ ++ SL  L+LS N   G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 579 PSST-QLQSFDASSFTGNDLCG 599
           P S  QL S    +  GN L G
Sbjct: 483 PESLGQLTSLRILNLNGNSLSG 504

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 57.5 bits (139), Expect = 1e-08
 Identities = 35/110 (31%), Positives = 48/110 (43%), Gaps = 25/110 (22%)

Query: 328 LELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNI 387
           L L N    G +PN +  L  L  + L  N + G IP SL + T+LE LD+  N F G+I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 388 PTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIP 437
           P   G+                         L  L+IL+L  N+L G +P
Sbjct: 483 PESLGQ-------------------------LTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 56.0 bits (135), Expect = 4e-08
 Identities = 36/98 (36%), Positives = 51/98 (52%), Gaps = 6/98 (6%)

Query: 29  ISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVSIELESLDL 88
           I  L L  N G  G IP  ++ L +L+SINL G  +   I   L   +      LE LDL
Sbjct: 420 IDGLGLD-NQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITS-----LEVLDL 473

Query: 89  RSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLG 126
             +S +G + + LGQ  +L  L+L  NS+ G +P +LG
Sbjct: 474 SYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 55.6 bits (134), Expect = 6e-08
 Identities = 28/88 (31%), Positives = 50/88 (56%), Gaps = 1/88 (1%)

Query: 83  LESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLN 142
           ++ L L +  + G + + + + ++L +++L+ NSI G IP SLG +++L VL +  N  N
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN 479

Query: 143 GTLSEIHFSNLTKLSWFRVGGNKLTLEV 170
           G++ E     LT L    + GN L+  V
Sbjct: 480 GSIPE-SLGQLTSLRILNLNGNSLSGRV 506

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 47.9 bits (114), Expect = 1e-05
 Identities = 26/66 (39%), Positives = 41/66 (62%), Gaps = 2/66 (3%)

Query: 3   HLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGV 62
           HL+ ++L  N ++G I   +LG++TS+  LDLS N+   G IP S+  L +L+ +NL G 
Sbjct: 443 HLQSINLSGNSIRGNI-PPSLGSITSLEVLDLSYNS-FNGSIPESLGQLTSLRILNLNGN 500

Query: 63  HLSQEI 68
            LS  +
Sbjct: 501 SLSGRV 506

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 46.9 bits (111), Expect = 2e-05
 Identities = 52/176 (29%), Positives = 80/176 (45%), Gaps = 11/176 (6%)

Query: 211 NSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQIT---DLTKVTQLLFLSVHSNNMSGPLP 267
            SG+S L     L +   L  LDL LN+    I+   +LT +T L   + +  ++   + 
Sbjct: 77  PSGISSLDGSENLLNLLPLPSLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIG 136

Query: 268 LISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEI 327
           L+ SNL  LDLS+N      S      +    +L  L L  N L  ++P    +  NL  
Sbjct: 137 LLKSNLKELDLSDNKIESLPSP-----LRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNN 190

Query: 328 LELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEF 383
           L+LS NK +  LP  +  L++L  L L  N +   +  SL N   L  L++  N+ 
Sbjct: 191 LDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKL 244

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 41.0 bits (97), Expect = 6e-05
 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 1/61 (1%)

Query: 106 NLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNK 165
           NL +LDL+NN +      +   L NL+VL +  N L  ++S   FS L  L    + GN 
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLT-SISPEAFSGLPSLRSLDLSGNN 59

Query: 166 L 166
           L
Sbjct: 60  L 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.1 bits (92), Expect = 3e-04
 Identities = 20/58 (34%), Positives = 32/58 (55%)

Query: 517 QSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLSNNKL 574
           +SL+ S+N  T     +   + +L+ +D S N L+   P++ S L SL  L+LS N L
Sbjct: 3   KSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 43.3 bits (102), Expect = 4e-04
 Identities = 35/94 (37%), Positives = 51/94 (54%), Gaps = 13/94 (13%)

Query: 231 FLD-LGLNQ--FHGQI-TDLTKVTQLLFLSVHSNNMSGPLPL----ISSNLVYLDLSNNS 282
           F+D LGL+     G I  D++K+  L  +++  N++ G +P     I+S L  LDLS NS
Sbjct: 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITS-LEVLDLSYNS 477

Query: 283 FSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIP 316
           F+GS+   L     +  SL  L L  NSL G +P
Sbjct: 478 FNGSIPESL----GQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 42.1 bits (99), Expect = 9e-04
 Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 4/71 (5%)

Query: 276 LDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKF 335
           ++LS NS  G++       +    SL  L L  NS  G IP+      +L IL L+ N  
Sbjct: 447 INLSGNSIRGNIP----PSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSL 502

Query: 336 TGKLPNSLGSL 346
           +G++P +LG  
Sbjct: 503 SGRVPAALGGR 513

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.5 bits (88), Expect = 0.001
 Identities = 20/60 (33%), Positives = 29/60 (48%)

Query: 324 NLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEF 383
           NL+ L+LSNN+ T     +   L +L  L L  N L+   P +     +L SLD+  N  
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 41.3 bits (97), Expect = 0.002
 Identities = 31/136 (22%), Positives = 53/136 (38%), Gaps = 46/136 (33%)

Query: 401 LILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYL 460
           L L +    G +P  +  L  LQ ++L+ N++ G IP  + +IT +              
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSL-------------- 468

Query: 461 PLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLN 520
                                     E+L      D+S N+   SIP  +  L + + LN
Sbjct: 469 --------------------------EVL------DLSYNSFNGSIPESLGQLTSLRILN 496

Query: 521 FSHNSFTGRIPESIGA 536
            + NS +GR+P ++G 
Sbjct: 497 LNGNSLSGRVPAALGG 512

Length = 623

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 40.0 bits (94), Expect = 0.003
 Identities = 48/189 (25%), Positives = 75/189 (39%), Gaps = 28/189 (14%)

Query: 4   LEYLSLRNNKLQGTIDS-----EALGNLTSISRLDLSLNT-GPEGRIPRSMASLCNLKSI 57
           L+ L L  N+            + L     +  LDLS N  GP+G     + SL  L+S 
Sbjct: 53  LKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDG--CGVLESL--LRSS 108

Query: 58  NLRGVHLSQEISEILNI-FSGC----VSIELESLDLRSSSISGHLTDQLGQ----FKNLD 108
           +L+ + L+        +         +   LE L L  + + G   + L +     ++L 
Sbjct: 109 SLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLK 168

Query: 109 NLDLANNSIVGP----IPQSLGHLSNLRVLQIYNNKLN----GTLSEIHFSNLTKLSWFR 160
            L+LANN I       + + L    NL VL + NN L       L+E   ++L  L    
Sbjct: 169 ELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET-LASLKSLEVLN 227

Query: 161 VGGNKLTLE 169
           +G N LT  
Sbjct: 228 LGDNNLTDA 236

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 39.8 bits (93), Expect = 0.004
 Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 2/87 (2%)

Query: 182 ALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHG 241
            LG  N  +    P  +   +HLQ +NL  + +    P     S   L+ LDL  N F+G
Sbjct: 422 GLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSL-GSITSLEVLDLSYNSFNG 480

Query: 242 QITD-LTKVTQLLFLSVHSNNMSGPLP 267
            I + L ++T L  L+++ N++SG +P
Sbjct: 481 SIPESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 39.6 bits (92), Expect = 0.004
 Identities = 34/103 (33%), Positives = 55/103 (53%), Gaps = 3/103 (2%)

Query: 493 KETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSG 552
           K  D+S N+L+  +P  ++NL    +L+ S N  +  +P  I  + +LE +D S N +  
Sbjct: 166 KNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII- 222

Query: 553 EIPQSMSNLMSLNHLNLSNNKLTGKIPSSTQLQSFDASSFTGN 595
           E+  S+SNL +L+ L LSNNKL     S   L + +    + N
Sbjct: 223 ELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNN 265

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 35.6 bits (83), Expect = 0.004
 Identities = 18/59 (30%), Positives = 30/59 (50%)

Query: 83  LESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKL 141
           L+SLDL ++ ++           NL  LDL+ N++    P++   L +LR L +  N L
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	677
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	100.0
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.93
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.9
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.89
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.88
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.87
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.85
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.79
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.78
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.73
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.71
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.68
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.65
PLN03150	623	hypothetical protein; Provisional	99.55
PLN03150	623	hypothetical protein; Provisional	99.3
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.24
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.18
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.16
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.14
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.14
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.14
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.13
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.08
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.07
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.03
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.01
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.0
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.96
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.92
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.88
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.84
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.78
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.75
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.6
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.55
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.47
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.39
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.34
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.23
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.12
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.12
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.1
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.97
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.87
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.86
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.86
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.83
PRK15386	426	type III secretion protein GogB; Provisional	97.81
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.75
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.67
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.63
PRK15386	426	type III secretion protein GogB; Provisional	97.6
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.55
KOG4341	483	consensus F-box protein containing LRR [General fu	97.41
KOG4341	483	consensus F-box protein containing LRR [General fu	97.18
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.82
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.73
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.14
KOG4308	478	consensus LRR-containing protein [Function unknown	96.02
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.99
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.96
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.57
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.47
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.37
KOG4308	478	consensus LRR-containing protein [Function unknown	94.34
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	91.93
KOG0473	326	consensus Leucine-rich repeat protein [Function un	91.65
smart00370	26	LRR Leucine-rich repeats, outliers.	90.39
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	90.39
smart00370	26	LRR Leucine-rich repeats, outliers.	90.17
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	90.17
KOG0473	326	consensus Leucine-rich repeat protein [Function un	89.86
KOG4242	553	consensus Predicted myosin-I-binding protein [Cell	88.76
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	86.68
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	85.58
KOG3864	221	consensus Uncharacterized conserved protein [Funct	84.27
PF15102	146	TMEM154: TMEM154 protein family	80.43

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.2e-63  Score=582.11  Aligned_cols=537  Identities=33%  Similarity=0.524  Sum_probs=467.9

Q ss_pred             CcccEEEccCCCCceecCCccccCCCCCCEEecCCCCCCCccCchhhc-CCCCCCEEEccCCcCCcccchhhhhccccCc
Q 048402            2 IHLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMA-SLCNLKSINLRGVHLSQEISEILNIFSGCVS   80 (677)
Q Consensus         2 ~~L~~L~Ls~n~~~~~i~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~l~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~   80 (677)
                      .+++.|+|++|.+.|.+ +..|..+++|++|+|+ ++.+.+.+|..+. .+++|++|++++|.+++.+|.  +.++    
T Consensus        69 ~~v~~L~L~~~~i~~~~-~~~~~~l~~L~~L~Ls-~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~----  140 (968)
T PLN00113         69 SRVVSIDLSGKNISGKI-SSAIFRLPYIQTINLS-NNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIP----  140 (968)
T ss_pred             CcEEEEEecCCCccccC-ChHHhCCCCCCEEECC-CCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccC----
Confidence            36788999999988777 7788899999999999 7777878887665 889999999999998887775  3455    


Q ss_pred             CCccEEEcccCcCccccccccCCCCCCCEEECcCCccccCCCcCCCCCCCCCEEEccccccccccChhhhhCCCCCCEEE
Q 048402           81 IELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFR  160 (677)
Q Consensus        81 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~l~~~~~~~l~~L~~L~  160 (677)
                       +|++|++++|.+++.+|..++++++|++|++++|.+.+..|..++++++|++|++++|.+.+.+|. .++++++|+.|+
T Consensus       141 -~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~  218 (968)
T PLN00113        141 -NLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPR-ELGQMKSLKWIY  218 (968)
T ss_pred             -CCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCCh-HHcCcCCccEEE
Confidence             899999999999888888899999999999999998888899999999999999999998877887 788999999999


Q ss_pred             eeccccceecCCCCCCCcCccEEEeecccCCCCCChhccCCCCCCEEEccCCCCCCccchHHHhccCCccEEECCCccCc
Q 048402          161 VGGNKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFH  240 (677)
Q Consensus       161 l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~  240 (677)
                      +++|.+.+..+..+..+++|++|++++|.+.+..|..++++++|++|++++|.+++..|..+. .+++|++|++++|.+.
T Consensus       219 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~  297 (968)
T PLN00113        219 LGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIF-SLQKLISLDLSDNSLS  297 (968)
T ss_pred             CcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHh-hccCcCEEECcCCeec
Confidence            999999888888888899999999999999888899999999999999999998887776663 5788999999999888


Q ss_pred             cccCC-ccccccccEEEcccCCCCCCCCCC---CCCccEEEccCCcccccCChhHhhccCCCCCcCeEecCCCCCcccCC
Q 048402          241 GQITD-LTKVTQLLFLSVHSNNMSGPLPLI---SSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIP  316 (677)
Q Consensus       241 ~~~~~-~~~~~~L~~L~l~~n~~~~~~~~~---~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  316 (677)
                      +.++. +..+++|+.|++++|.+.+..|..   +++|+.|++++|.+.+..|..+.    .+++|+.|++++|.+.+..|
T Consensus       298 ~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~----~~~~L~~L~Ls~n~l~~~~p  373 (968)
T PLN00113        298 GEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLG----KHNNLTVLDLSTNNLTGEIP  373 (968)
T ss_pred             cCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHh----CCCCCcEEECCCCeeEeeCC
Confidence            76665 455688999999999888877654   67889999999988887776554    37889999999999988888


Q ss_pred             cccccCCCCceecccCccccccCCcCcCCCCCccEEECcCCcccccCCccCcCCCCCCEEecCCCcccccCChhhhhccC
Q 048402          317 DCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFS  396 (677)
Q Consensus       317 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~  396 (677)
                      ..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|++++..|..|..+++|+.|++++|.+.+.+|.... .++
T Consensus       374 ~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~  452 (968)
T PLN00113        374 EGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKW-DMP  452 (968)
T ss_pred             hhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhc-cCC
Confidence            8888888999999999999888888888899999999999999888888888999999999999998887777655 688


Q ss_pred             CceEEEcCCCcccccCCccccCCCCCCEEeCCCCcCCCCcCccccccccCccccccCcccCccCCCCCCCcccccceeeE
Q 048402          397 RMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASV  476 (677)
Q Consensus       397 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  476 (677)
                      +|+.|++++|++.+.+|..+ ..++|+.|++++|++.+.+|..+.++++                               
T Consensus       453 ~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~-------------------------------  500 (968)
T PLN00113        453 SLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSE-------------------------------  500 (968)
T ss_pred             CCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhc-------------------------------
Confidence            89999999999888877765 4578999999999988887776655444                               


Q ss_pred             eecCCchhhhhhhccccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeecccccccCCCCcEEECCCCcccccCcc
Q 048402          477 VSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQ  556 (677)
Q Consensus       477 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~  556 (677)
                                     |+.|++++|++.+.+|..+.++++|++|+|++|.+++.+|..|+++++|++|++++|++++.+|.
T Consensus       501 ---------------L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~  565 (968)
T PLN00113        501 ---------------LMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPK  565 (968)
T ss_pred             ---------------cCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCCh
Confidence                           58999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCCCEEEcccCcccccCCCCCCCCCcCcccccCC-CCCCCC
Q 048402          557 SMSNLMSLNHLNLSNNKLTGKIPSSTQLQSFDASSFTGN-DLCGAP  601 (677)
Q Consensus       557 ~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n-~l~~~~  601 (677)
                      .+..+++|++|++++|++.|.+|..+++.++...++.|| .+||.+
T Consensus       566 ~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~  611 (968)
T PLN00113        566 NLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGD  611 (968)
T ss_pred             hHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCCc
Confidence            999999999999999999999999988888888889999 688754

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=4.6e-58  Score=535.29  Aligned_cols=512  Identities=30%  Similarity=0.503  Sum_probs=461.6

Q ss_pred             CCCCCEEecCCCCCCCccCchhhcCCCCCCEEEccCCcCCcccchhhh-hccccCcCCccEEEcccCcCccccccccCCC
Q 048402           26 LTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEISEILN-IFSGCVSIELESLDLRSSSISGHLTDQLGQF  104 (677)
Q Consensus        26 l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l  104 (677)
                      ..+++.|+|+ ++.+.+.++.++..+++|++|++++|++.+.+|..+. .+.     +|++|++++|.+++.+|.  +.+
T Consensus        68 ~~~v~~L~L~-~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~-----~L~~L~Ls~n~l~~~~p~--~~l  139 (968)
T PLN00113         68 SSRVVSIDLS-GKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSS-----SLRYLNLSNNNFTGSIPR--GSI  139 (968)
T ss_pred             CCcEEEEEec-CCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCC-----CCCEEECcCCccccccCc--ccc
Confidence            4579999999 7788888899999999999999999999988887654 788     999999999999988775  568


Q ss_pred             CCCCEEECcCCccccCCCcCCCCCCCCCEEEccccccccccChhhhhCCCCCCEEEeeccccceecCCCCCCCcCccEEE
Q 048402          105 KNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQLVALG  184 (677)
Q Consensus       105 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~  184 (677)
                      ++|++|++++|.+++..|..++++++|++|++++|.+.+.+|. .+.++++|++|++++|.+.+..+..+..+.+|+.|+
T Consensus       140 ~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  218 (968)
T PLN00113        140 PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPN-SLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIY  218 (968)
T ss_pred             CCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCCh-hhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEE
Confidence            9999999999999989999999999999999999999888887 799999999999999999988899999999999999


Q ss_pred             eecccCCCCCChhccCCCCCCEEEccCCCCCCccchHHHhccCCccEEECCCccCccccC-CccccccccEEEcccCCCC
Q 048402          185 FHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQIT-DLTKVTQLLFLSVHSNNMS  263 (677)
Q Consensus       185 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-~~~~~~~L~~L~l~~n~~~  263 (677)
                      +++|.+.+.+|..++.+++|++|++++|.+++..|..+ ..+++|++|++++|.+.+..+ .+..+++|+.|++++|.+.
T Consensus       219 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~  297 (968)
T PLN00113        219 LGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSL-GNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLS  297 (968)
T ss_pred             CcCCccCCcCChhHhcCCCCCEEECcCceeccccChhH-hCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeec
Confidence            99999999999999999999999999999988877766 558899999999999987655 4556799999999999998


Q ss_pred             CCCCCC---CCCccEEEccCCcccccCChhHhhccCCCCCcCeEecCCCCCcccCCcccccCCCCceecccCccccccCC
Q 048402          264 GPLPLI---SSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLP  340 (677)
Q Consensus       264 ~~~~~~---~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  340 (677)
                      +..|..   +++|+.|++++|.+.+..|..+.    .+++|+.|++++|.+.+.+|..++.+++|+.|++++|++.+..|
T Consensus       298 ~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~----~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p  373 (968)
T PLN00113        298 GEIPELVIQLQNLEILHLFSNNFTGKIPVALT----SLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIP  373 (968)
T ss_pred             cCCChhHcCCCCCcEEECCCCccCCcCChhHh----cCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCC
Confidence            887754   67899999999999888776654    48899999999999998999999999999999999999998899


Q ss_pred             cCcCCCCCccEEECcCCcccccCCccCcCCCCCCEEecCCCcccccCChhhhhccCCceEEEcCCCcccccCCccccCCC
Q 048402          341 NSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLA  420 (677)
Q Consensus       341 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  420 (677)
                      ..+..+++|+.|++++|++.+..|..+..+++|+.|++++|.+.+.+|..+. .++.|+.|++++|.+++.++..+..++
T Consensus       374 ~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~  452 (968)
T PLN00113        374 EGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFT-KLPLVYFLDISNNNLQGRINSRKWDMP  452 (968)
T ss_pred             hhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHh-cCCCCCEEECcCCcccCccChhhccCC
Confidence            9999999999999999999999999999999999999999999988887765 799999999999999998888888999


Q ss_pred             CCCEEeCCCCcCCCCcCccccccccCccccccCcccCccCCCCCCCcccccceeeEeecCCchhhhhhhccccEEEcccC
Q 048402          421 FLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRN  500 (677)
Q Consensus       421 ~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n  500 (677)
                      +|+.|++++|++.+.+|..+.                                               .++|+.|++++|
T Consensus       453 ~L~~L~L~~n~~~~~~p~~~~-----------------------------------------------~~~L~~L~ls~n  485 (968)
T PLN00113        453 SLQMLSLARNKFFGGLPDSFG-----------------------------------------------SKRLENLDLSRN  485 (968)
T ss_pred             CCcEEECcCceeeeecCcccc-----------------------------------------------cccceEEECcCC
Confidence            999999999999877775431                                               244699999999


Q ss_pred             cccccCCcccCCCCCCcEEeccCCcceeecccccccCCCCcEEECCCCcccccCccccccCCCCCEEEcccCcccccCCC
Q 048402          501 NLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLSNNKLTGKIPS  580 (677)
Q Consensus       501 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~  580 (677)
                      ++++.+|..+.++++|+.|++++|++.+.+|+.+.++++|++|++++|.+++.+|..+..+++|+.||+++|++.+.+|.
T Consensus       486 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~  565 (968)
T PLN00113        486 QFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPK  565 (968)
T ss_pred             ccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCCh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             C-CCCCCcCcccccCCCCCC
Q 048402          581 S-TQLQSFDASSFTGNDLCG  599 (677)
Q Consensus       581 ~-~~~~~l~~~~~~~n~l~~  599 (677)
                      . ..+..+..+++++|.+.|
T Consensus       566 ~l~~l~~L~~l~ls~N~l~~  585 (968)
T PLN00113        566 NLGNVESLVQVNISHNHLHG  585 (968)
T ss_pred             hHhcCcccCEEeccCCccee
Confidence            5 556778888899887665

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=2.5e-40  Score=326.43  Aligned_cols=394  Identities=20%  Similarity=0.197  Sum_probs=287.6

Q ss_pred             CCEEEccCCcCCcccchhhhhccccCcCCccEEEcccCcCccccccccCCCCCCCEEECcCCccccCCCcCCCCCCCCCE
Q 048402           54 LKSINLRGVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRV  133 (677)
Q Consensus        54 L~~L~l~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  133 (677)
                      -+.||.+++.+...--..+.   +..++.-+.|++++|.+..+.+..|.++++|+.+++.+|.++ .+|.......+|+.
T Consensus        54 ~~lldcs~~~lea~~~~~l~---g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~  129 (873)
T KOG4194|consen   54 TRLLDCSDRELEAIDKSRLK---GFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEK  129 (873)
T ss_pred             ceeeecCccccccccccccC---CcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeE
Confidence            45678888776643222222   222225677999999999888888999999999999999998 77887777788999


Q ss_pred             EEccccccccccChhhhhCCCCCCEEEeeccccceecCCCCCCCcCccEEEeecccCCCCCChhccCCCCCCEEEccCCC
Q 048402          134 LQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSG  213 (677)
Q Consensus       134 L~L~~n~i~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~  213 (677)
                      |+|.+|.|+ ++....+..++.|+.|||+.|.++......|....++++|+|++|.|+..-...|..+.+|..|.|++|+
T Consensus       130 L~L~~N~I~-sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNr  208 (873)
T KOG4194|consen  130 LDLRHNLIS-SVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNR  208 (873)
T ss_pred             Eeeeccccc-cccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCc
Confidence            999999998 7777789999999999999999998888888877888888888888888777888888888888888888


Q ss_pred             CCCccchHHHhccCCccEEECCCccCccccCCccccccccEEEcccCCCCCCCCCCCCCccEEEccCCcccccCChhHhh
Q 048402          214 MSDLFPIRFLKSAFQLKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNNMSGPLPLISSNLVYLDLSNNSFSGSVSHYLCY  293 (677)
Q Consensus       214 i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~  293 (677)
                      ++.+.+. .++.+++|+.|+|..|+|.-.                                              ..  .
T Consensus       209 ittLp~r-~Fk~L~~L~~LdLnrN~iriv----------------------------------------------e~--l  239 (873)
T KOG4194|consen  209 ITTLPQR-SFKRLPKLESLDLNRNRIRIV----------------------------------------------EG--L  239 (873)
T ss_pred             ccccCHH-Hhhhcchhhhhhccccceeee----------------------------------------------hh--h
Confidence            8877444 346677777777777766421                                              00  0


Q ss_pred             ccCCCCCcCeEecCCCCCcccCCcccccCCCCceecccCccccccCCcCcCCCCCccEEECcCCcccccCCccCcCCCCC
Q 048402          294 RINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTAL  373 (677)
Q Consensus       294 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L  373 (677)
                      .|.++++|+.|.+..|.++..-...|..+.++++|+|+.|++...-..++.++++|+.|+++.|.|..+-++++..+++|
T Consensus       240 tFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL  319 (873)
T KOG4194|consen  240 TFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKL  319 (873)
T ss_pred             hhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccc
Confidence            23345666677777777666556667777778888888887777777777778888888888888877777777777888


Q ss_pred             CEEecCCCcccccCChhhhhccCCceEEEcCCCcccccCCccccCCCCCCEEeCCCCcCCCCcCccccccccCccccccC
Q 048402          374 ESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFT  453 (677)
Q Consensus       374 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~  453 (677)
                      ++|+|++|+++ .+++..+..+..|++|+|+.|++...-...|..+++|+.|||++|.+++.+-+.              
T Consensus       320 ~~LdLs~N~i~-~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDa--------------  384 (873)
T KOG4194|consen  320 KELDLSSNRIT-RLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDA--------------  384 (873)
T ss_pred             eeEeccccccc-cCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecc--------------
Confidence            88888888876 666666667777788888888777666677777888888888888776433321              


Q ss_pred             cccCccCCCCCCCcccccceeeEeecCCchhhhhhhccccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeecccc
Q 048402          454 RSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPES  533 (677)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~  533 (677)
                                                   ...+.++++|+.|++.+|++..+...+|.++.+|++|||.+|.|..+.|++
T Consensus       385 -----------------------------a~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nA  435 (873)
T KOG4194|consen  385 -----------------------------AVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNA  435 (873)
T ss_pred             -----------------------------hhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccc
Confidence                                         111223455566666666666555556666666666666666666666666


Q ss_pred             cccCCCCcEEECC
Q 048402          534 IGAMRSLESIDFS  546 (677)
Q Consensus       534 ~~~l~~L~~L~Ls  546 (677)
                      |..+ .|++|-+.
T Consensus       436 Fe~m-~Lk~Lv~n  447 (873)
T KOG4194|consen  436 FEPM-ELKELVMN  447 (873)
T ss_pred             cccc-hhhhhhhc
Confidence            6666 66666554

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=8.4e-39  Score=315.69  Aligned_cols=362  Identities=26%  Similarity=0.297  Sum_probs=193.6

Q ss_pred             cEEEccCCCCceecCCccccCCCCCCEEecCCCCCCCccCchhhcCCCCCCEEEccCCcCCcccchhhhhccccCcCCcc
Q 048402            5 EYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVSIELE   84 (677)
Q Consensus         5 ~~L~Ls~n~~~~~i~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~L~   84 (677)
                      +.||+++|.++ .++...|.++++|+.+++. +|.++ .+|.......+|+.|+|.+|.|+..-.+.+..++     .|+
T Consensus        81 ~~LdlsnNkl~-~id~~~f~nl~nLq~v~l~-~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~-----alr  152 (873)
T KOG4194|consen   81 QTLDLSNNKLS-HIDFEFFYNLPNLQEVNLN-KNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALP-----ALR  152 (873)
T ss_pred             eeeeccccccc-cCcHHHHhcCCcceeeeec-cchhh-hcccccccccceeEEeeeccccccccHHHHHhHh-----hhh
Confidence            34555555555 4444455555555555554 33333 3444444444455555555555555555555555     555


Q ss_pred             EEEcccCcCccccccccCCCCCCCEEECcCCccccCCCcCCCCCCCCCEEEccccccccccChhhhhCCCCCCEEEeecc
Q 048402           85 SLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGN  164 (677)
Q Consensus        85 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~l~~~~~~~l~~L~~L~l~~n  164 (677)
                      +||||.|.++.+....|..-.++++|+|++|.|+......|.++.+|..|.|+.|+++ .+|...|.++++|+.|+|..|
T Consensus       153 slDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN  231 (873)
T KOG4194|consen  153 SLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRN  231 (873)
T ss_pred             hhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc-ccCHHHhhhcchhhhhhcccc
Confidence            5555555555444444555455555555555555554555555555555555555555 555555555555555555555


Q ss_pred             ccceecCCCCCCCcCccEEEeecccCCCCCChhccCCCCCCEEEccCCCCCCccchHHHhccCCccEEECCCccCccccC
Q 048402          165 KLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQIT  244 (677)
Q Consensus       165 ~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~  244 (677)
                      .+......+                        |..+++|+.|.+..|+|.......| ..+.++++|+|..|+++..-.
T Consensus       232 ~irive~lt------------------------FqgL~Sl~nlklqrN~I~kL~DG~F-y~l~kme~l~L~~N~l~~vn~  286 (873)
T KOG4194|consen  232 RIRIVEGLT------------------------FQGLPSLQNLKLQRNDISKLDDGAF-YGLEKMEHLNLETNRLQAVNE  286 (873)
T ss_pred             ceeeehhhh------------------------hcCchhhhhhhhhhcCcccccCcce-eeecccceeecccchhhhhhc
Confidence            555443444                        4455555555555555544433222 234555555555555544332


Q ss_pred             -CccccccccEEEcccCCCCCCCCCC---CCCccEEEccCCcccccCChhHhhccCCCCCcCeEecCCCCCcccCCcccc
Q 048402          245 -DLTKVTQLLFLSVHSNNMSGPLPLI---SSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWM  320 (677)
Q Consensus       245 -~~~~~~~L~~L~l~~n~~~~~~~~~---~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~  320 (677)
                       .+++++.|+.|++++|.|...-+..   .++|++|+|++|+++...++.+..    +..|++|.+++|.+......+|.
T Consensus       287 g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~----L~~Le~LnLs~Nsi~~l~e~af~  362 (873)
T KOG4194|consen  287 GWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRV----LSQLEELNLSHNSIDHLAEGAFV  362 (873)
T ss_pred             ccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHH----HHHhhhhcccccchHHHHhhHHH
Confidence             2233445555555554444322221   345555555555555444444333    56666677777766655556666


Q ss_pred             cCCCCceecccCccccccCCc---CcCCCCCccEEECcCCcccccCCccCcCCCCCCEEecCCCcccccCChhhhhccCC
Q 048402          321 SYQNLEILELSNNKFTGKLPN---SLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSR  397 (677)
Q Consensus       321 ~l~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~  397 (677)
                      ++++|++|||++|.+...+.+   .|.++++|+.|.+.+|++..+.-.+|.++++|+.|||.+|.+. ++....|+.+ .
T Consensus       363 ~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~Naia-SIq~nAFe~m-~  440 (873)
T KOG4194|consen  363 GLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIA-SIQPNAFEPM-E  440 (873)
T ss_pred             HhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcce-eecccccccc-h
Confidence            677777777777766644333   3556666666666666666555566666666666666666665 4444444344 5


Q ss_pred             ceEEEcCCC
Q 048402          398 MVVLILRSN  406 (677)
Q Consensus       398 L~~L~L~~n  406 (677)
                      |+.|.+..-
T Consensus       441 Lk~Lv~nSs  449 (873)
T KOG4194|consen  441 LKELVMNSS  449 (873)
T ss_pred             hhhhhhccc
Confidence            665555543

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=7.9e-41  Score=315.98  Aligned_cols=473  Identities=26%  Similarity=0.364  Sum_probs=290.3

Q ss_pred             ccEEEccCCCCceecCCccccCCCCCCEEecCCCCCCCccCchhhcCCCCCCEEEccCCcCCcccchhhhhccccCcCCc
Q 048402            4 LEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVSIEL   83 (677)
Q Consensus         4 L~~L~Ls~n~~~~~i~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~L   83 (677)
                      +..+.+++|.+. .+ .+.+.++..|.+|+++ .+... ..|.+++.+..++.++.++|++. .+|+.+....     ++
T Consensus        47 l~~lils~N~l~-~l-~~dl~nL~~l~vl~~~-~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~-----~l  116 (565)
T KOG0472|consen   47 LQKLILSHNDLE-VL-REDLKNLACLTVLNVH-DNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLI-----SL  116 (565)
T ss_pred             hhhhhhccCchh-hc-cHhhhcccceeEEEec-cchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhh-----hh
Confidence            345566666665 33 4556666666666666 33332 45666666666666666666665 3444455555     56


Q ss_pred             cEEEcccCcCccccccccCCCCCCCEEECcCCccccCCCcCCCCCCCCCEEEccccccccccChhhhhCCCCCCEEEeec
Q 048402           84 ESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGG  163 (677)
Q Consensus        84 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~l~~~~~~~l~~L~~L~l~~  163 (677)
                      +.++.++|.+. ..|++++.+..|+.|+..+|+++ ..|+++..+.+|..+++.+|++. .+|+..+. ++.|+++|...
T Consensus       117 ~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~-m~~L~~ld~~~  192 (565)
T KOG0472|consen  117 VKLDCSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLK-ALPENHIA-MKRLKHLDCNS  192 (565)
T ss_pred             hhhhcccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchh-hCCHHHHH-HHHHHhcccch
Confidence            66666666666 45556666666666666666666 55666666666666666666665 55553443 66666666666


Q ss_pred             cccceecCCCCCCCcCccEEEeecccCCCCCChhccCCCCCCEEEccCCCCCCccchHHHhccCCccEEECCCccCcccc
Q 048402          164 NKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQI  243 (677)
Q Consensus       164 n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~  243 (677)
                      |.+. ..|..++.+.+|+.|++..|++.. .| .|..+..|++++++.|.|... |.+..++++++..||+..|+++..+
T Consensus       193 N~L~-tlP~~lg~l~~L~~LyL~~Nki~~-lP-ef~gcs~L~Elh~g~N~i~~l-pae~~~~L~~l~vLDLRdNklke~P  268 (565)
T KOG0472|consen  193 NLLE-TLPPELGGLESLELLYLRRNKIRF-LP-EFPGCSLLKELHVGENQIEML-PAEHLKHLNSLLVLDLRDNKLKEVP  268 (565)
T ss_pred             hhhh-cCChhhcchhhhHHHHhhhccccc-CC-CCCccHHHHHHHhcccHHHhh-HHHHhcccccceeeeccccccccCc
Confidence            6554 233344444445555555544432 22 344444455555544444333 3333344444444444444444333


Q ss_pred             CCccccccccEEEcccCCCCCCCCCCCCCccEEEccCCcccccCChhHhhccCCCCCcCeEecCCCCCcccCCcccccCC
Q 048402          244 TDLTKVTQLLFLSVHSNNMSGPLPLISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQ  323 (677)
Q Consensus       244 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~  323 (677)
                      ..+..                     +.+|..||+++|.+++..+     .++++ .|+.|-+.+|.+..+- ..+-+..
T Consensus       269 de~cl---------------------LrsL~rLDlSNN~is~Lp~-----sLgnl-hL~~L~leGNPlrTiR-r~ii~~g  320 (565)
T KOG0472|consen  269 DEICL---------------------LRSLERLDLSNNDISSLPY-----SLGNL-HLKFLALEGNPLRTIR-REIISKG  320 (565)
T ss_pred             hHHHH---------------------hhhhhhhcccCCccccCCc-----ccccc-eeeehhhcCCchHHHH-HHHHccc
Confidence            33333                     3445555666665554322     45556 7888888888776321 1111111


Q ss_pred             ---CCceec-------ccCcc---c-ccc-CCc---CcCCCCCccEEECcCCcccccCCccCcCCC---CCCEEecCCCc
Q 048402          324 ---NLEILE-------LSNNK---F-TGK-LPN---SLGSLTSLIWLLLGKNRLSGTIPVSLKNCT---ALESLDVGENE  382 (677)
Q Consensus       324 ---~L~~L~-------L~~n~---l-~~~-~~~---~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~---~L~~L~l~~n~  382 (677)
                         -|++|.       ++.-.   - ... .+.   ......+.+.|++++-+++ ..|+....-.   -....+++.|+
T Consensus       321 T~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNq  399 (565)
T KOG0472|consen  321 TQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQ  399 (565)
T ss_pred             HHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccch
Confidence               122221       11100   0 001 111   1233557788888888887 4443332222   36788899998


Q ss_pred             ccccCChhhhhccCCceE-EEcCCCcccccCCccccCCCCCCEEeCCCCcCCCCcCccccccccCccccccCcccCccCC
Q 048402          383 FVGNIPTWTGERFSRMVV-LILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLP  461 (677)
Q Consensus       383 l~~~~~~~~~~~l~~L~~-L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~  461 (677)
                      +. ++|..+. .+..+.+ +.+++|.+. -+|..++.+++|..|++++|.+. .+|..++.                   
T Consensus       400 L~-elPk~L~-~lkelvT~l~lsnn~is-fv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~-------------------  456 (565)
T KOG0472|consen  400 LC-ELPKRLV-ELKELVTDLVLSNNKIS-FVPLELSQLQKLTFLDLSNNLLN-DLPEEMGS-------------------  456 (565)
T ss_pred             Hh-hhhhhhH-HHHHHHHHHHhhcCccc-cchHHHHhhhcceeeecccchhh-hcchhhhh-------------------
Confidence            87 7887665 3444443 555555554 77888888999999999888765 56655544                   


Q ss_pred             CCCCCcccccceeeEeecCCchhhhhhhccccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeecccccccCCCCc
Q 048402          462 LPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLE  541 (677)
Q Consensus       462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  541 (677)
                                                 +..|+.||+|.|+|. .+|..+..+..++.+-.++|++....|+.+++|.+|.
T Consensus       457 ---------------------------lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~  508 (565)
T KOG0472|consen  457 ---------------------------LVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLT  508 (565)
T ss_pred             ---------------------------hhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcc
Confidence                                       344599999999998 7888888888888888888999866677799999999


Q ss_pred             EEECCCCcccccCccccccCCCCCEEEcccCccc
Q 048402          542 SIDFSVNQLSGEIPQSMSNLMSLNHLNLSNNKLT  575 (677)
Q Consensus       542 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~  575 (677)
                      +|||.+|.+. .+|..++++++|++|++++|+++
T Consensus       509 tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  509 TLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             eeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence            9999999998 88889999999999999999998

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=2.6e-39  Score=305.80  Aligned_cols=475  Identities=24%  Similarity=0.311  Sum_probs=323.9

Q ss_pred             ccEEEcccCcCccccccccCCCCCCCEEECcCCccccCCCcCCCCCCCCCEEEccccccccccChhhhhCCCCCCEEEee
Q 048402           83 LESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVG  162 (677)
Q Consensus        83 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~l~~~~~~~l~~L~~L~l~  162 (677)
                      ++.+.+++|.+.. +-+.+.++..|.+|++.+|.+. ..|.+++.+..++.++.++|++. .+|+ .+..+.+++.++.+
T Consensus        47 l~~lils~N~l~~-l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~-~i~s~~~l~~l~~s  122 (565)
T KOG0472|consen   47 LQKLILSHNDLEV-LREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPE-QIGSLISLVKLDCS  122 (565)
T ss_pred             hhhhhhccCchhh-ccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccH-HHhhhhhhhhhhcc
Confidence            5555555555552 2334555555555555555555 45555555555555555555554 5555 45555555555555


Q ss_pred             ccccceecCCCCCCCcCccEEEeecccCCCCCChhccCCCCCCEEEccCCCCCCccchHHHhccCCccEEECCCccCccc
Q 048402          163 GNKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQ  242 (677)
Q Consensus       163 ~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~  242 (677)
                      +|.+.. .++.+..+..++.++..+|++. ..|..+..+.++..+++.+|++....+... . ++.|+++|...|.+...
T Consensus       123 ~n~~~e-l~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i-~-m~~L~~ld~~~N~L~tl  198 (565)
T KOG0472|consen  123 SNELKE-LPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHI-A-MKRLKHLDCNSNLLETL  198 (565)
T ss_pred             ccceee-cCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHH-H-HHHHHhcccchhhhhcC
Confidence            555542 3334445555555555555554 456677778888888888888888765544 3 67888999988888888


Q ss_pred             cCCccccccccEEEcccCCCCCCCCC-CCCCccEEEccCCcccccCChhHhhccCCCCCcCeEecCCCCCcccCCccccc
Q 048402          243 ITDLTKVTQLLFLSVHSNNMSGPLPL-ISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMS  321 (677)
Q Consensus       243 ~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~  321 (677)
                      ++.+..+.+|..|++..|++...+.. .++.|+++.+..|.+. ..|...+   ..++++..||+.+|++. ..|+.+.-
T Consensus       199 P~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~-~lpae~~---~~L~~l~vLDLRdNklk-e~Pde~cl  273 (565)
T KOG0472|consen  199 PPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIE-MLPAEHL---KHLNSLLVLDLRDNKLK-EVPDEICL  273 (565)
T ss_pred             ChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHH-hhHHHHh---cccccceeeeccccccc-cCchHHHH
Confidence            88888888888889988888754422 2667888888888775 3333332   24788888888888887 77888888


Q ss_pred             CCCCceecccCccccccCCcCcCCCCCccEEECcCCcccccCCccCcC-----CCCCCE----EecCCCc----ccccCC
Q 048402          322 YQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKN-----CTALES----LDVGENE----FVGNIP  388 (677)
Q Consensus       322 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~-----l~~L~~----L~l~~n~----l~~~~~  388 (677)
                      +++|+.||+|+|.|+ ..|..++++ .|+.|-+.+|.+..+-.+.+.+     ++.|+.    =.++...    -.+..|
T Consensus       274 LrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~  351 (565)
T KOG0472|consen  274 LRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLP  351 (565)
T ss_pred             hhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCC
Confidence            888888999988888 577788888 8888888888875321111100     011111    0000000    001111


Q ss_pred             hhhh---hccCCceEEEcCCCcccccCCccccCCCC---CCEEeCCCCcCCCCcCccccccccCccccccCcccCccCCC
Q 048402          389 TWTG---ERFSRMVVLILRSNNFHGPLPTRLCDLAF---LQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPL  462 (677)
Q Consensus       389 ~~~~---~~l~~L~~L~L~~n~l~~~~~~~~~~l~~---L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~  462 (677)
                      .+.+   ....+.+.|++++-+++ .+|+.......   ....+++.|++. ++|+.+..++.+.+.-..+....+    
T Consensus       352 ~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~is----  425 (565)
T KOG0472|consen  352 SESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKIS----  425 (565)
T ss_pred             CCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccc----
Confidence            1111   12456677888887777 44443332222   677888888886 677766666655433322222211    


Q ss_pred             CCCCcccccceeeEeecCCchhhhhhhccccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeecccccccCCCCcE
Q 048402          463 PLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLES  542 (677)
Q Consensus       463 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  542 (677)
                                        -.+.....+++|..|++++|.+. .+|..++.+..||.||+|.|+|. .+|.....+..++.
T Consensus       426 ------------------fv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEt  485 (565)
T KOG0472|consen  426 ------------------FVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLET  485 (565)
T ss_pred             ------------------cchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHH
Confidence                              12334456888899999999988 78999999999999999999999 89999999999999


Q ss_pred             EECCCCcccccCccccccCCCCCEEEcccCcccccCCCCCCCCCcCcccccCCCCC
Q 048402          543 IDFSVNQLSGEIPQSMSNLMSLNHLNLSNNKLTGKIPSSTQLQSFDASSFTGNDLC  598 (677)
Q Consensus       543 L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n~l~  598 (677)
                      +-.++|++..+.|+.+.++..|.+||+.+|.+....|..+.+++++.+.+.||.+.
T Consensus       486 llas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  486 LLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             HHhccccccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCccC
Confidence            99999999988888899999999999999999988888899999999999888655

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=100.00  E-value=1.7e-37  Score=322.66  Aligned_cols=484  Identities=23%  Similarity=0.283  Sum_probs=382.7

Q ss_pred             EEEccCCCCceecCCccccCCCCCCEEecCCCCCCCccCchhhcCCCCCCEEEccCCcCCcccchhhhhccccCcCCccE
Q 048402            6 YLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVSIELES   85 (677)
Q Consensus         6 ~L~Ls~n~~~~~i~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~L~~   85 (677)
                      .+|++.+++. .| |..+..-..+..|++..|-.+... -+++.+.-+|+.||+++|++. ..|..+..+.     +|+.
T Consensus         2 ~vd~s~~~l~-~i-p~~i~~~~~~~~ln~~~N~~l~~p-l~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~-----~L~~   72 (1081)
T KOG0618|consen    2 HVDASDEQLE-LI-PEQILNNEALQILNLRRNSLLSRP-LEFVEKRVKLKSLDLSNNQIS-SFPIQITLLS-----HLRQ   72 (1081)
T ss_pred             CcccccccCc-cc-chhhccHHHHHhhhccccccccCc-hHHhhheeeeEEeeccccccc-cCCchhhhHH-----HHhh
Confidence            4678888887 67 666666666999999844333333 344555666999999999877 5677777777     8999


Q ss_pred             EEcccCcCccccccccCCCCCCCEEECcCCccccCCCcCCCCCCCCCEEEccccccccccChhhhhCCCCCCEEEeeccc
Q 048402           86 LDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNK  165 (677)
Q Consensus        86 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~l~~~~~~~l~~L~~L~l~~n~  165 (677)
                      |+++.|.+. ..|.+..++.+|++|.|.+|.+. ..|.++..+++|++|+++.|.+. .+|. .+..++.+..+..++|.
T Consensus        73 ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl-~i~~lt~~~~~~~s~N~  148 (1081)
T KOG0618|consen   73 LNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPL-VIEVLTAEEELAASNNE  148 (1081)
T ss_pred             cccchhhHh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCch-hHHhhhHHHHHhhhcch
Confidence            999999998 56788999999999999999988 78999999999999999999996 8887 78899999999999992


Q ss_pred             cceecCCCCCCCcCccEEEeecccCCCCCChhccCCCCCCEEEccCCCCCCccchHHHhccCCccEEECCCccCccccCC
Q 048402          166 LTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQITD  245 (677)
Q Consensus       166 l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~  245 (677)
                      .......     ..++.+++..|.+.+.++..+..++.  .|++.+|.+...    -...+..|+.+....|++....  
T Consensus       149 ~~~~lg~-----~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~~----dls~~~~l~~l~c~rn~ls~l~--  215 (1081)
T KOG0618|consen  149 KIQRLGQ-----TSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEVL----DLSNLANLEVLHCERNQLSELE--  215 (1081)
T ss_pred             hhhhhcc-----ccchhhhhhhhhcccchhcchhhhhe--eeecccchhhhh----hhhhccchhhhhhhhcccceEE--
Confidence            2111111     12777788888888888877777766  799999988722    1234678888888888876421  


Q ss_pred             ccccccccEEEcccCCCCCCCCCC-CCCccEEEccCCcccccCChhHhhccCCCCCcCeEecCCCCCcccCCcccccCCC
Q 048402          246 LTKVTQLLFLSVHSNNMSGPLPLI-SSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQN  324 (677)
Q Consensus       246 ~~~~~~L~~L~l~~n~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~  324 (677)
                       ...++++.|+.++|.++...+.. ..+|+++++++|++++.. ++++.    +.+|+.+...+|.++ .+|..+...++
T Consensus       216 -~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp-~wi~~----~~nle~l~~n~N~l~-~lp~ri~~~~~  288 (1081)
T KOG0618|consen  216 -ISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLP-EWIGA----CANLEALNANHNRLV-ALPLRISRITS  288 (1081)
T ss_pred             -ecCcchheeeeccCcceeeccccccccceeeecchhhhhcch-HHHHh----cccceEecccchhHH-hhHHHHhhhhh
Confidence             22378999999999998655544 568999999999998654 76665    899999999999996 78888888999


Q ss_pred             CceecccCccccccCCcCcCCCCCccEEECcCCcccccCCccCcCCCC-CCEEecCCCcccccCChhhhhccCCceEEEc
Q 048402          325 LEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTA-LESLDVGENEFVGNIPTWTGERFSRMVVLIL  403 (677)
Q Consensus       325 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L  403 (677)
                      |+.|++..|.+. .+|....++++|++|+|..|++....+..|..... |+.|+.+.|++. ..|..-...++.|+.|++
T Consensus       289 L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~-~lp~~~e~~~~~Lq~Lyl  366 (1081)
T KOG0618|consen  289 LVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLS-TLPSYEENNHAALQELYL  366 (1081)
T ss_pred             HHHHHhhhhhhh-hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcccc-ccccccchhhHHHHHHHH
Confidence            999999999998 67777888999999999999998433333444443 788888888886 666555556788999999


Q ss_pred             CCCcccccCCccccCCCCCCEEeCCCCcCCCCcCc-cccccccCccccccCcccCccCCCCCCCcccccceeeEeecCCc
Q 048402          404 RSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPK-CINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEA  482 (677)
Q Consensus       404 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~-~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  482 (677)
                      .+|.++...-+.+.+..+|+.|+|++|++. .+|. ++.++                                       
T Consensus       367 anN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kl---------------------------------------  406 (1081)
T KOG0618|consen  367 ANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKL---------------------------------------  406 (1081)
T ss_pred             hcCcccccchhhhccccceeeeeecccccc-cCCHHHHhch---------------------------------------
Confidence            999999877777888999999999999986 4443 44443                                       


Q ss_pred             hhhhhhhccccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeecccccccCCCCcEEECCCCcccccCccccccCC
Q 048402          483 IEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLM  562 (677)
Q Consensus       483 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  562 (677)
                             ..|++|+||+|.++ .+|..+..+..|++|..-+|++. ..| .+..++.|+.+|+|.|+++...-..-...+
T Consensus       407 -------e~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p  476 (1081)
T KOG0618|consen  407 -------EELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSP  476 (1081)
T ss_pred             -------HHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCc
Confidence                   34589999999998 67789999999999999999998 777 788999999999999999865433333448


Q ss_pred             CCCEEEcccCcc
Q 048402          563 SLNHLNLSNNKL  574 (677)
Q Consensus       563 ~L~~L~ls~N~l  574 (677)
                      +|++||+++|..
T Consensus       477 ~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  477 NLKYLDLSGNTR  488 (1081)
T ss_pred             ccceeeccCCcc
Confidence            999999999984

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=100.00  E-value=1e-36  Score=317.00  Aligned_cols=482  Identities=26%  Similarity=0.329  Sum_probs=378.4

Q ss_pred             EEecCCCCCCCccCchhhcCCCCCCEEEccCCcCCcccchhhhhccccCcCCccEEEcccCcCccccccccCCCCCCCEE
Q 048402           31 RLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNL  110 (677)
Q Consensus        31 ~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  110 (677)
                      ++|.+ .+.++ .+|..+-.-..+..|+++.|.+-..+-+......     +|+.||+++|++. ..|..+..+.+|+.|
T Consensus         2 ~vd~s-~~~l~-~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v-----~L~~l~lsnn~~~-~fp~~it~l~~L~~l   73 (1081)
T KOG0618|consen    2 HVDAS-DEQLE-LIPEQILNNEALQILNLRRNSLLSRPLEFVEKRV-----KLKSLDLSNNQIS-SFPIQITLLSHLRQL   73 (1081)
T ss_pred             Ccccc-cccCc-ccchhhccHHHHHhhhccccccccCchHHhhhee-----eeEEeeccccccc-cCCchhhhHHHHhhc
Confidence            35566 44443 5666665555699999999988766666666666     7999999999998 678889999999999


Q ss_pred             ECcCCccccCCCcCCCCCCCCCEEEccccccccccChhhhhCCCCCCEEEeeccccceecCCCCCCCcCccEEEeecccC
Q 048402          111 DLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQLVALGFHNCYV  190 (677)
Q Consensus       111 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~  190 (677)
                      +++.|.+. ..|.+..++.+|+++.|.+|.++ .+|. .+..+.+|+.|++++|.+.. .+..+..+..++.+..++|..
T Consensus        74 n~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~-~~~~lknl~~LdlS~N~f~~-~Pl~i~~lt~~~~~~~s~N~~  149 (1081)
T KOG0618|consen   74 NLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPA-SISELKNLQYLDLSFNHFGP-IPLVIEVLTAEEELAASNNEK  149 (1081)
T ss_pred             ccchhhHh-hCchhhhhhhcchhheeccchhh-cCch-hHHhhhcccccccchhccCC-CchhHHhhhHHHHHhhhcchh
Confidence            99999998 67889999999999999999997 8887 79999999999999999874 344455566677777777722


Q ss_pred             CCCCChhccCCCCCCEEEccCCCCCCccchHHHhccCCcc-EEECCCccCccccCCccccccccEEEcccCCCCCCCCCC
Q 048402          191 GSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLK-FLDLGLNQFHGQITDLTKVTQLLFLSVHSNNMSGPLPLI  269 (677)
Q Consensus       191 ~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~-~L~Ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~  269 (677)
                      ....    +... ++.+++..|.+.+.++.+.    ..++ .++|++|.+.  ..+...+.+|+.+....|++.... ..
T Consensus       150 ~~~l----g~~~-ik~~~l~~n~l~~~~~~~i----~~l~~~ldLr~N~~~--~~dls~~~~l~~l~c~rn~ls~l~-~~  217 (1081)
T KOG0618|consen  150 IQRL----GQTS-IKKLDLRLNVLGGSFLIDI----YNLTHQLDLRYNEME--VLDLSNLANLEVLHCERNQLSELE-IS  217 (1081)
T ss_pred             hhhh----cccc-chhhhhhhhhcccchhcch----hhhheeeecccchhh--hhhhhhccchhhhhhhhcccceEE-ec
Confidence            2222    2222 7788888887776655444    2333 5999999887  445566678888888888765321 22


Q ss_pred             CCCccEEEccCCcccccCChhHhhccCCCCCcCeEecCCCCCcccCCcccccCCCCceecccCccccccCCcCcCCCCCc
Q 048402          270 SSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSL  349 (677)
Q Consensus       270 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  349 (677)
                      -++++.|+.++|.++...+...      ..+|+.+++++|+++ .+|++.+.+.+|+.++..+|+++ .+|..+....+|
T Consensus       218 g~~l~~L~a~~n~l~~~~~~p~------p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L  289 (1081)
T KOG0618|consen  218 GPSLTALYADHNPLTTLDVHPV------PLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSL  289 (1081)
T ss_pred             CcchheeeeccCcceeeccccc------cccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhH
Confidence            4689999999999884433322      578999999999998 56699999999999999999997 788888889999


Q ss_pred             cEEECcCCcccccCCccCcCCCCCCEEecCCCcccccCChhhhhccCC-ceEEEcCCCcccccCCccccCCCCCCEEeCC
Q 048402          350 IWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSR-MVVLILRSNNFHGPLPTRLCDLAFLQILDLA  428 (677)
Q Consensus       350 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  428 (677)
                      +.|.+..|.+. -+|....++++|++|++..|.+. .+|...+..... |+.|..+.|.+.......=...+.|+.|++.
T Consensus       290 ~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~Lyla  367 (1081)
T KOG0618|consen  290 VSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLA  367 (1081)
T ss_pred             HHHHhhhhhhh-hCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHh
Confidence            99999999998 56667788999999999999997 778755543433 7788888888873322222345678999999


Q ss_pred             CCcCCCCcCccccccccCccccccCcccCccCCCCCCCcccccceeeEeecCCchhhhhhhccccEEEcccCcccccCCc
Q 048402          429 DNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPL  508 (677)
Q Consensus       429 ~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~  508 (677)
                      +|.++...-+.+                                              .+...|+.|+|++|++......
T Consensus       368 nN~Ltd~c~p~l----------------------------------------------~~~~hLKVLhLsyNrL~~fpas  401 (1081)
T KOG0618|consen  368 NNHLTDSCFPVL----------------------------------------------VNFKHLKVLHLSYNRLNSFPAS  401 (1081)
T ss_pred             cCcccccchhhh----------------------------------------------ccccceeeeeecccccccCCHH
Confidence            998875443333                                              3455669999999999966667


Q ss_pred             ccCCCCCCcEEeccCCcceeecccccccCCCCcEEECCCCcccccCccccccCCCCCEEEcccCccccc-CCCCCCCCCc
Q 048402          509 EMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLSNNKLTGK-IPSSTQLQSF  587 (677)
Q Consensus       509 ~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~-~p~~~~~~~l  587 (677)
                      .+.++..|++|+||||+++ .+|+.+..+..|++|...+|++. ..| .+..+++|+.+|+|.|+++.. +|.....+.|
T Consensus       402 ~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~L  478 (1081)
T KOG0618|consen  402 KLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNL  478 (1081)
T ss_pred             HHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCccc
Confidence            7999999999999999999 88999999999999999999999 888 799999999999999999754 4544333788


Q ss_pred             CcccccCC
Q 048402          588 DASSFTGN  595 (677)
Q Consensus       588 ~~~~~~~n  595 (677)
                      +.++++||
T Consensus       479 kyLdlSGN  486 (1081)
T KOG0618|consen  479 KYLDLSGN  486 (1081)
T ss_pred             ceeeccCC
Confidence            89999988

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=1.2e-33  Score=281.26  Aligned_cols=366  Identities=22%  Similarity=0.365  Sum_probs=221.9

Q ss_pred             CCCCCEEEccCCcCC-cccchhhhhccccCcCCccEEEcccCcCccccccccCCCCCCCEEECcCCccccCCCcCCCCCC
Q 048402           51 LCNLKSINLRGVHLS-QEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLS  129 (677)
Q Consensus        51 l~~L~~L~l~~n~l~-~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  129 (677)
                      ++..|-.|+++|.++ +..|.....++     .++-|.|...++. .+|+.++.+.+|++|.+++|++. .+-..+..++
T Consensus         6 LpFVrGvDfsgNDFsg~~FP~~v~qMt-----~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp   78 (1255)
T KOG0444|consen    6 LPFVRGVDFSGNDFSGDRFPHDVEQMT-----QMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLP   78 (1255)
T ss_pred             cceeecccccCCcCCCCcCchhHHHhh-----heeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccch
Confidence            445566677777776 34666666666     6666766666666 46667777777777777777766 4455666777


Q ss_pred             CCCEEEccccccc-cccChhhhhCCCCCCEEEeeccccceecCCCCCCCcCccEEEeecccCCCCCChhccCCCCCCEEE
Q 048402          130 NLRVLQIYNNKLN-GTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLN  208 (677)
Q Consensus       130 ~L~~L~L~~n~i~-~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~  208 (677)
                      .|+.++++.|++. .-+|. .+..+..|..|||++|++.                         ..|..+..-+++-.|+
T Consensus        79 ~LRsv~~R~N~LKnsGiP~-diF~l~dLt~lDLShNqL~-------------------------EvP~~LE~AKn~iVLN  132 (1255)
T KOG0444|consen   79 RLRSVIVRDNNLKNSGIPT-DIFRLKDLTILDLSHNQLR-------------------------EVPTNLEYAKNSIVLN  132 (1255)
T ss_pred             hhHHHhhhccccccCCCCc-hhcccccceeeecchhhhh-------------------------hcchhhhhhcCcEEEE
Confidence            7777777777664 23444 4556777777777777665                         4566666677777888


Q ss_pred             ccCCCCCCccchHHHhccCCccEEECCCccCccccCCccccccccEEEcccCCCCCCCCCCCCCccEEEccCCcccccCC
Q 048402          209 LLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNNMSGPLPLISSNLVYLDLSNNSFSGSVS  288 (677)
Q Consensus       209 l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~  288 (677)
                      +++|+|..+ |..++-+++.|-.||||+|++...+|....+..|+.|++++|.+..                     -  
T Consensus       133 LS~N~IetI-Pn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~h---------------------f--  188 (1255)
T KOG0444|consen  133 LSYNNIETI-PNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNH---------------------F--  188 (1255)
T ss_pred             cccCccccC-CchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhH---------------------H--
Confidence            888887766 5555566777888888888887766666555555555554443321                     0  


Q ss_pred             hhHhhccCCCCCcCeEecCCCCCc-ccCCcccccCCCCceecccCccccccCCcCcCCCCCccEEECcCCcccccCCccC
Q 048402          289 HYLCYRINEPKSLIGLKLKDNSLQ-GEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSL  367 (677)
Q Consensus       289 ~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~  367 (677)
                        --..+..+++|+.|.+++.+=+ ..+|.++..+.+|..+|+|.|.+. ..|+++..+++|+.|+|++|+++       
T Consensus       189 --QLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-------  258 (1255)
T KOG0444|consen  189 --QLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-------  258 (1255)
T ss_pred             --HHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-------
Confidence              0011222455555666554321 245555566666666666666665 45555555555666655555555       


Q ss_pred             cCCCCCCEEecCCCcccccCChhhhhccCCceEEEcCCCcccccCCccccCCCCCCEEeCCCCcCC-CCcCccccccccC
Q 048402          368 KNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLF-GTIPKCINNITGM  446 (677)
Q Consensus       368 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~p~~~~~l~~l  446 (677)
                                        .+..... ...+|++|+++.|+++ .+|++++.++.|+.|.+.+|+++ .-+|..++.+..|
T Consensus       259 ------------------eL~~~~~-~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~L  318 (1255)
T KOG0444|consen  259 ------------------ELNMTEG-EWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQL  318 (1255)
T ss_pred             ------------------eeeccHH-HHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhh
Confidence                              2222222 3456777777777777 67788888888888888888774 1233333333322


Q ss_pred             ccccccCcccCccCCCCCCCcccccceeeEeecCCchhhhhhhccccEEEcccCcccccCCcccCCCCCCcEEeccCCcc
Q 048402          447 VAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSF  526 (677)
Q Consensus       447 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l  526 (677)
                                                                    +.+..++|.+. ..|+.+..+..|+.|.|+.|++
T Consensus       319 ----------------------------------------------evf~aanN~LE-lVPEglcRC~kL~kL~L~~NrL  351 (1255)
T KOG0444|consen  319 ----------------------------------------------EVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRL  351 (1255)
T ss_pred             ----------------------------------------------HHHHhhccccc-cCchhhhhhHHHHHhcccccce
Confidence                                                          44444444444 5555666666666666666665


Q ss_pred             eeecccccccCCCCcEEECCCCccc
Q 048402          527 TGRIPESIGAMRSLESIDFSVNQLS  551 (677)
Q Consensus       527 ~~~~p~~~~~l~~L~~L~Ls~N~l~  551 (677)
                      - .+|+++.-++.|+.||+..|.-.
T Consensus       352 i-TLPeaIHlL~~l~vLDlreNpnL  375 (1255)
T KOG0444|consen  352 I-TLPEAIHLLPDLKVLDLRENPNL  375 (1255)
T ss_pred             e-echhhhhhcCCcceeeccCCcCc
Confidence            5 55666666666666666666554

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=1.1e-33  Score=281.58  Aligned_cols=387  Identities=24%  Similarity=0.363  Sum_probs=282.6

Q ss_pred             CCcccEEEccCCCCceecCCccccCCCCCCEEecCCCCCCCccCchhhcCCCCCCEEEccCCcCCcccchhhhhccccCc
Q 048402            1 FIHLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVS   80 (677)
Q Consensus         1 ~~~L~~L~Ls~n~~~~~i~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~   80 (677)
                      +|-++-.|+++|.++|.-+|.....++.++.|.|. ...+ ..+|..++.+.+|++|.+++|++. .+-..+..++    
T Consensus         6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLn-rt~L-~~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp----   78 (1255)
T KOG0444|consen    6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLN-RTKL-EQVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLP----   78 (1255)
T ss_pred             cceeecccccCCcCCCCcCchhHHHhhheeEEEec-hhhh-hhChHHHHHHhhhhhhhhhhhhhH-hhhhhhccch----
Confidence            35677889999999876668888899999999996 4443 467899999999999999999876 3445566677    


Q ss_pred             CCccEEEcccCcCcc-ccccccCCCCCCCEEECcCCccccCCCcCCCCCCCCCEEEccccccccccChhhhhCCCCCCEE
Q 048402           81 IELESLDLRSSSISG-HLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWF  159 (677)
Q Consensus        81 ~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~l~~~~~~~l~~L~~L  159 (677)
                       .|+.++++.|++.. -+|..+.++..|+.||||+|.++ ..|..+..-+++-+|+|++|+|. +||...|.+++.|-.|
T Consensus        79 -~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfL  155 (1255)
T KOG0444|consen   79 -RLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFL  155 (1255)
T ss_pred             -hhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhh
Confidence             89999999988853 36777888999999999999988 77888888899999999999997 8888888888888888


Q ss_pred             EeeccccceecCCCCCCCcCccEEEeecccCCCCCChhccCCCCCCEEEccCCCCCCccchHHHhccCCccEEECCCccC
Q 048402          160 RVGGNKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQF  239 (677)
Q Consensus       160 ~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l  239 (677)
                      ||++|++.                         ..|..+..+.+|++|++++|.+.-..-.. ...+++|+.|.+++.+-
T Consensus       156 DLS~NrLe-------------------------~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQ-LPsmtsL~vLhms~TqR  209 (1255)
T KOG0444|consen  156 DLSNNRLE-------------------------MLPPQIRRLSMLQTLKLSNNPLNHFQLRQ-LPSMTSLSVLHMSNTQR  209 (1255)
T ss_pred             ccccchhh-------------------------hcCHHHHHHhhhhhhhcCCChhhHHHHhc-Cccchhhhhhhcccccc
Confidence            88888876                         45666777777788888777653221100 01122333333332221


Q ss_pred             ccccCCccccccccEEEcccCCCCCCCCCCCCCccEEEccCCcccccCChhHhhccCCCCCcCeEecCCCCCcccCCccc
Q 048402          240 HGQITDLTKVTQLLFLSVHSNNMSGPLPLISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCW  319 (677)
Q Consensus       240 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~  319 (677)
                      +                                           ...+|.    .+..+.+|..++++.|.+. .+|+++
T Consensus       210 T-------------------------------------------l~N~Pt----sld~l~NL~dvDlS~N~Lp-~vPecl  241 (1255)
T KOG0444|consen  210 T-------------------------------------------LDNIPT----SLDDLHNLRDVDLSENNLP-IVPECL  241 (1255)
T ss_pred             h-------------------------------------------hhcCCC----chhhhhhhhhccccccCCC-cchHHH
Confidence            1                                           011222    2333788899999999998 899999


Q ss_pred             ccCCCCceecccCccccccCCcCcCCCCCccEEECcCCcccccCCccCcCCCCCCEEecCCCcccc-cCChhhhhccCCc
Q 048402          320 MSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVG-NIPTWTGERFSRM  398 (677)
Q Consensus       320 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~~l~~L  398 (677)
                      -.+++|+.|+||+|+|+ .+....+.-.+|++|+++.|+++ .+|++++.+++|+.|.+.+|++.- -+|+.++ .+..|
T Consensus       242 y~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIG-KL~~L  318 (1255)
T KOG0444|consen  242 YKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIG-KLIQL  318 (1255)
T ss_pred             hhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchh-hhhhh
Confidence            99999999999999999 45555667789999999999998 789999999999999999998752 3555555 45556


Q ss_pred             eEEEcCCCcccccCCccccCCCCCCEEeCCCCcCCCCcCccccccccCccccccCcccCccCCCCCCCcccccceeeEee
Q 048402          399 VVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVS  478 (677)
Q Consensus       399 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  478 (677)
                      +.+..++|.+. .+|+.++.|..|+.|.|++|+                                               
T Consensus       319 evf~aanN~LE-lVPEglcRC~kL~kL~L~~Nr-----------------------------------------------  350 (1255)
T KOG0444|consen  319 EVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNR-----------------------------------------------  350 (1255)
T ss_pred             HHHHhhccccc-cCchhhhhhHHHHHhcccccc-----------------------------------------------
Confidence            66665555554 555555555555555555554                                               


Q ss_pred             cCCchhhhhhhccccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeecccccccCCCCcEEECC
Q 048402          479 EGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFS  546 (677)
Q Consensus       479 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls  546 (677)
                                             +. .+|+.+.-++.|+.||+..|.=....|.--..-++|+.-++.
T Consensus       351 -----------------------Li-TLPeaIHlL~~l~vLDlreNpnLVMPPKP~da~~~lefYNID  394 (1255)
T KOG0444|consen  351 -----------------------LI-TLPEAIHLLPDLKVLDLRENPNLVMPPKPNDARKKLEFYNID  394 (1255)
T ss_pred             -----------------------ee-echhhhhhcCCcceeeccCCcCccCCCCcchhhhcceeeecc
Confidence                                   43 678888889999999999998653444322222455544443

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.93  E-value=5.4e-28  Score=229.08  Aligned_cols=421  Identities=20%  Similarity=0.209  Sum_probs=284.8

Q ss_pred             CccEEEcccCcCccccccccCCCCCCCEEECcCCccccCCCcCCCCCCCCCEEEccc-cccccccChhhhhCCCCCCEEE
Q 048402           82 ELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYN-NKLNGTLSEIHFSNLTKLSWFR  160 (677)
Q Consensus        82 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~i~~~l~~~~~~~l~~L~~L~  160 (677)
                      .-.+++|..|+|+.+.+.+|+.+++|+.|||++|.|+.+.|++|.++++|..|-+.+ |+|+ .+|...|+++..++.|.
T Consensus        68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqrLl  146 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQRLL  146 (498)
T ss_pred             cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHHHh
Confidence            678999999999999999999999999999999999999999999999998888877 8898 99999999999999999


Q ss_pred             eeccccceecCCCCCCCcCccEEEeecccCCCCCChhccCCCCCCEEEccCCCCCCccchHHHhccCCccEEECCCccCc
Q 048402          161 VGGNKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFH  240 (677)
Q Consensus       161 l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~  240 (677)
                      +.-|++.....++|..++.+..|.+.+|.+.......|..+..++.+.+..|.+...-      +++.+... +..+.+.
T Consensus       147 lNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdC------nL~wla~~-~a~~~ie  219 (498)
T KOG4237|consen  147 LNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDC------NLPWLADD-LAMNPIE  219 (498)
T ss_pred             cChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccccc------ccchhhhH-Hhhchhh
Confidence            9999999988899999999999999999988777778889999999998888743321      11111110 1111111


Q ss_pred             cccCCccccccccEEEcccCCCCCCCCCC-CCCccEE---EccCCcccccCChhHhhccCCCCCcCeEecCCCCCcccCC
Q 048402          241 GQITDLTKVTQLLFLSVHSNNMSGPLPLI-SSNLVYL---DLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIP  316 (677)
Q Consensus       241 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~-~~~L~~L---~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  316 (677)
                           ..+........+.+.++....+.. ...++.+   ..+.+...+.-|..   .+..+++|++|++++|+++++-+
T Consensus       220 -----tsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~---cf~~L~~L~~lnlsnN~i~~i~~  291 (498)
T KOG4237|consen  220 -----TSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAK---CFKKLPNLRKLNLSNNKITRIED  291 (498)
T ss_pred             -----cccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHH---HHhhcccceEeccCCCccchhhh
Confidence                 001111111111122221111111 0011111   11222222233322   25668999999999999999889


Q ss_pred             cccccCCCCceecccCccccccCCcCcCCCCCccEEECcCCcccccCCccCcCCCCCCEEecCCCcccccC-Chhhhhcc
Q 048402          317 DCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNI-PTWTGERF  395 (677)
Q Consensus       317 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~l  395 (677)
                      .+|.+..++++|.|..|++.......|.++..|+.|+|++|+|+...|.+|..+.+|.+|++-.|++.-.- -.|+.+.+
T Consensus       292 ~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wl  371 (498)
T KOG4237|consen  292 GAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWL  371 (498)
T ss_pred             hhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHH
Confidence            99999999999999999998877888999999999999999999999999999999999999988875322 13333222


Q ss_pred             CCceEEEcCCCcccccCCccccCCCCCCEEeCCCCcCCC---CcCccccccccCccccccCcccCccCCCCCCCcccccc
Q 048402          396 SRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFG---TIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTE  472 (677)
Q Consensus       396 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~---~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  472 (677)
                              +.+...+.. . -+.-..++.+++++..+..   .-|++.+-.++-              +.+.        
T Consensus       372 --------r~~~~~~~~-~-Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~--------------~cP~--------  419 (498)
T KOG4237|consen  372 --------RKKSVVGNP-R-CQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSS--------------PCPP--------  419 (498)
T ss_pred             --------hhCCCCCCC-C-CCCCchhccccchhccccccccCCccccCCCCCC--------------CCCC--------
Confidence                    122212111 1 1222345666666665421   112111110000              0000        


Q ss_pred             eeeEeecCCchhhhhhhccc-cEEEcccCcccccCCcccCCCCCCcEEeccCCcceeecccccccCCCCcEEECCCCccc
Q 048402          473 KASVVSEGEAIEYDEILNLV-KETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLS  551 (677)
Q Consensus       473 ~~~~~~~~~~~~~~~~l~~L-~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~  551 (677)
                                     ..+-+ ++...|+..++ .+|..+.  ..-.+|++.+|.++ .+|..  .+.+| .+|+++|+++
T Consensus       420 ---------------~c~c~~tVvRcSnk~lk-~lp~~iP--~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~  477 (498)
T KOG4237|consen  420 ---------------PCTCLDTVVRCSNKLLK-LLPRGIP--VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRIS  477 (498)
T ss_pred             ---------------CcchhhhhHhhcccchh-hcCCCCC--chhHHHhcccchhc-ccCHH--HHhhh-hcccccCcee
Confidence                           00001 23344555454 3443332  34567899999998 77776  66788 8999999999


Q ss_pred             ccCccccccCCCCCEEEcccC
Q 048402          552 GEIPQSMSNLMSLNHLNLSNN  572 (677)
Q Consensus       552 ~~~p~~l~~l~~L~~L~ls~N  572 (677)
                      .....+|.++++|.+|.+++|
T Consensus       478 ~Lsn~tf~n~tql~tlilsyn  498 (498)
T KOG4237|consen  478 SLSNYTFSNMTQLSTLILSYN  498 (498)
T ss_pred             hhhcccccchhhhheeEEecC
Confidence            777788999999999999987

>PLN03210 Resistant to P

Probab=99.90  E-value=2.4e-22  Score=234.91  Aligned_cols=347  Identities=19%  Similarity=0.209  Sum_probs=194.2

Q ss_pred             hhhcCCCCCCEEEccCCcC------CcccchhhhhccccCcCCccEEEcccCcCccccccccCCCCCCCEEECcCCcccc
Q 048402           46 RSMASLCNLKSINLRGVHL------SQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVG  119 (677)
Q Consensus        46 ~~l~~l~~L~~L~l~~n~l------~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  119 (677)
                      .+|..+++|+.|.+..+..      ...+|..+..++.    +|+.|.+.++.+. .+|..| ...+|++|++.+|.+. 
T Consensus       552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~----~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-  624 (1153)
T PLN03210        552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPP----KLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-  624 (1153)
T ss_pred             HHHhcCccccEEEEecccccccccceeecCcchhhcCc----ccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-
Confidence            4456666666666644321      1223444443331    5666666666665 344444 3466666666666665 


Q ss_pred             CCCcCCCCCCCCCEEEccccccccccChhhhhCCCCCCEEEeeccccceecCCCCCCCcCccEEEeecccCCCCCChhcc
Q 048402          120 PIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLH  199 (677)
Q Consensus       120 ~~~~~~~~l~~L~~L~L~~n~i~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~  199 (677)
                      .++..+..+++|+.|+++++...+.+|.  +..+++|+.|++++|......+..+..+.+|+.|++++|..-..+|..+ 
T Consensus       625 ~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-  701 (1153)
T PLN03210        625 KLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-  701 (1153)
T ss_pred             ccccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-
Confidence            4555666666666666665543335553  5556666666666654433444444555555555555554434444433 


Q ss_pred             CCCCCCEEEccCCCCCCccchHHHhccCCccEEECCCccCccccCCccccccccEEEcccCCCCCCCCCCCCCccEEEcc
Q 048402          200 SQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNNMSGPLPLISSNLVYLDLS  279 (677)
Q Consensus       200 ~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~  279 (677)
                      ++++|+.|++++|......|.    ...+|+.|++++|.+... |....+++|+.|.+.++......             
T Consensus       702 ~l~sL~~L~Lsgc~~L~~~p~----~~~nL~~L~L~~n~i~~l-P~~~~l~~L~~L~l~~~~~~~l~-------------  763 (1153)
T PLN03210        702 NLKSLYRLNLSGCSRLKSFPD----ISTNISWLDLDETAIEEF-PSNLRLENLDELILCEMKSEKLW-------------  763 (1153)
T ss_pred             CCCCCCEEeCCCCCCcccccc----ccCCcCeeecCCCccccc-cccccccccccccccccchhhcc-------------
Confidence            455666666666543322221    123555566655555432 22223344444443332110000             


Q ss_pred             CCcccccCChhHhhccCCCCCcCeEecCCCCCcccCCcccccCCCCceecccCccccccCCcCcCCCCCccEEECcCCcc
Q 048402          280 NNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRL  359 (677)
Q Consensus       280 ~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~  359 (677)
                       +.+....+.    ....+++|+.|++++|...+.+|..++++++|+.|++++|...+.+|... .+++|+.|++++|..
T Consensus       764 -~~~~~l~~~----~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~  837 (1153)
T PLN03210        764 -ERVQPLTPL----MTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSR  837 (1153)
T ss_pred             -ccccccchh----hhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCc
Confidence             000000000    11124677777887777666777777788888888887775444566554 577788888887755


Q ss_pred             cccCCccCcCCCCCCEEecCCCcccccCChhhhhccCCceEEEcCCCcccccCCccccCCCCCCEEeCCCCc
Q 048402          360 SGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNN  431 (677)
Q Consensus       360 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~  431 (677)
                      ...+|..   .++|+.|++++|.+. .+|.++. .+++|+.|++++|+-...+|..+..+++|+.+++++|.
T Consensus       838 L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~-~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        838 LRTFPDI---STNISDLNLSRTGIE-EVPWWIE-KFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             ccccccc---ccccCEeECCCCCCc-cChHHHh-cCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence            4444432   357778888888776 6777665 67788888888765544566667777788888887774

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.89  E-value=6.6e-22  Score=231.32  Aligned_cols=81  Identities=19%  Similarity=0.245  Sum_probs=55.5

Q ss_pred             hccccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeecccccccCCCCcEEECCCCcccccCccccccCCCCCEEE
Q 048402          489 LNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLN  568 (677)
Q Consensus       489 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  568 (677)
                      +++|+.|++++|.....+|..   .++|++|+|++|.++ .+|..+..+++|+.|++++|+-...+|..+..+++|+.++
T Consensus       824 L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~  899 (1153)
T PLN03210        824 LESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVD  899 (1153)
T ss_pred             ccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeee
Confidence            455677777776554444432   356777778887777 6677777777888888877544345666677777777777


Q ss_pred             cccCc
Q 048402          569 LSNNK  573 (677)
Q Consensus       569 ls~N~  573 (677)
                      +++|.
T Consensus       900 l~~C~  904 (1153)
T PLN03210        900 FSDCG  904 (1153)
T ss_pred             cCCCc
Confidence            77774

syringae 6; Provisional

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.88  E-value=9.7e-25  Score=207.14  Aligned_cols=300  Identities=18%  Similarity=0.192  Sum_probs=181.6

Q ss_pred             CCcCeEecCCCCCcccCCcccccCCCCceecccCccccccCCcCcCCCCCccEEECcC-CcccccCCccCcCCCCCCEEe
Q 048402          299 KSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGK-NRLSGTIPVSLKNCTALESLD  377 (677)
Q Consensus       299 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L~  377 (677)
                      +.-.++++..|+|+.+.+.+|+.+++|+.||||+|.|+.+.|++|.++++|.+|.+.+ |+|+...-..|.++.+|+.|.
T Consensus        67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl  146 (498)
T KOG4237|consen   67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL  146 (498)
T ss_pred             CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence            3445556666666655555666666666666666666666666666666655555554 566544445566666666666


Q ss_pred             cCCCcccccCChhhhhccCCceEEEcCCCcccccCCccccCCCCCCEEeCCCCcCCC------------CcCcccccccc
Q 048402          378 VGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFG------------TIPKCINNITG  445 (677)
Q Consensus       378 l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~------------~~p~~~~~l~~  445 (677)
                      +.-|++. -++...+..++++..|.+.+|.+...-...|..+.+++.+.+..|++..            ..|..++...-
T Consensus       147 lNan~i~-Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc  225 (498)
T KOG4237|consen  147 LNANHIN-CIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARC  225 (498)
T ss_pred             cChhhhc-chhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhccccee
Confidence            6666655 4455555556666666666666653333355666666666665555210            11111111111


Q ss_pred             CccccccCcccCccCCCCCCCc-cccccee---eEeecCCchhhhhhhccccEEEcccCcccccCCcccCCCCCCcEEec
Q 048402          446 MVAANSFTRSSQQYLPLPLDGD-VILTEKA---SVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNF  521 (677)
Q Consensus       446 l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L  521 (677)
                      .....+......+..+..+... .++....   ......-...-++.+++|+.|++++|.++++-+..|.++..+++|.|
T Consensus       226 ~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L  305 (498)
T KOG4237|consen  226 VSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYL  305 (498)
T ss_pred             cchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhc
Confidence            1111111111111111110000 0000000   00001111233788999999999999999999999999999999999


Q ss_pred             cCCcceeecccccccCCCCcEEECCCCcccccCccccccCCCCCEEEcccCcccccCCCCCCCCCcCcccccCCCCCC
Q 048402          522 SHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLSNNKLTGKIPSSTQLQSFDASSFTGNDLCG  599 (677)
Q Consensus       522 s~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n~l~~  599 (677)
                      ..|++.......|.++..|++|+|.+|+|+...|.+|..+.+|.+|++-.|++.|.+.-.+.-.+++.....||.-|+
T Consensus       306 ~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq  383 (498)
T KOG4237|consen  306 TRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQ  383 (498)
T ss_pred             CcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCCCCC
Confidence            999999777889999999999999999999999999999999999999999998776544333334333333443343

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.87  E-value=1.9e-21  Score=210.53  Aligned_cols=261  Identities=27%  Similarity=0.321  Sum_probs=153.8

Q ss_pred             ccEEECCCccCccccCCccccccccEEEcccCCCCCCCCCCCCCccEEEccCCcccccCChhHhhccCCCCCcCeEecCC
Q 048402          229 LKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNNMSGPLPLISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKD  308 (677)
Q Consensus       229 L~~L~Ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~  308 (677)
                      -..|+++.+.++..++.+.  ++++.|++.+|+++. +|..+++|++|++++|.++.. |.       .+++|+.|++++
T Consensus       203 ~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~-LP~lp~~Lk~LdLs~N~LtsL-P~-------lp~sL~~L~Ls~  271 (788)
T PRK15387        203 NAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTS-LPALPPELRTLEVSGNQLTSL-PV-------LPPGLLELSIFS  271 (788)
T ss_pred             CcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCC-CCCCCCCCcEEEecCCccCcc-cC-------cccccceeeccC
Confidence            3445555555553333222  245555555555553 333455666666666666533 21       134566666666


Q ss_pred             CCCcccCCcccccCCCCceecccCccccccCCcCcCCCCCccEEECcCCcccccCCccCcCCCCCCEEecCCCcccccCC
Q 048402          309 NSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIP  388 (677)
Q Consensus       309 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  388 (677)
                      |.+. .+|..   .++|+.|++++|+++ .+|.   ..++|+.|++++|++++ +|..   ..+|+.|++++|.+. .+|
T Consensus       272 N~L~-~Lp~l---p~~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~-~LP  338 (788)
T PRK15387        272 NPLT-HLPAL---PSGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLT-SLP  338 (788)
T ss_pred             Cchh-hhhhc---hhhcCEEECcCCccc-cccc---cccccceeECCCCcccc-CCCC---cccccccccccCccc-ccc
Confidence            6665 23322   245666666666666 3343   23566677777776664 2321   234666667777665 455


Q ss_pred             hhhhhccCCceEEEcCCCcccccCCccccCCCCCCEEeCCCCcCCCCcCccccccccCccccccCcccCccCCCCCCCcc
Q 048402          389 TWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDV  468 (677)
Q Consensus       389 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~  468 (677)
                      ..    ..+|+.|++++|++++ +|..   .++|+.|++++|.+.+ +|..                             
T Consensus       339 ~l----p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l-----------------------------  380 (788)
T PRK15387        339 TL----PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL-----------------------------  380 (788)
T ss_pred             cc----ccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc-----------------------------
Confidence            31    2466777777777763 3432   2456667777776652 3321                             


Q ss_pred             cccceeeEeecCCchhhhhhhccccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeecccccccCCCCcEEECCCC
Q 048402          469 ILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVN  548 (677)
Q Consensus       469 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N  548 (677)
                                          +.+|+.|++++|++++ +|..   .++|+.|++++|+++ .+|...   .+|+.|++++|
T Consensus       381 --------------------~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Ls-sIP~l~---~~L~~L~Ls~N  432 (788)
T PRK15387        381 --------------------PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLT-SLPMLP---SGLLSLSVYRN  432 (788)
T ss_pred             --------------------ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCC-CCCcch---hhhhhhhhccC
Confidence                                1235777888888774 4433   256788888888887 466533   46777888888


Q ss_pred             cccccCccccccCCCCCEEEcccCcccccCCC
Q 048402          549 QLSGEIPQSMSNLMSLNHLNLSNNKLTGKIPS  580 (677)
Q Consensus       549 ~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~  580 (677)
                      +++ .+|..+..+++|+.|++++|++++..|.
T Consensus       433 qLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~  463 (788)
T PRK15387        433 QLT-RLPESLIHLSSETTVNLEGNPLSERTLQ  463 (788)
T ss_pred             ccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence            887 6788888888888888888888876554

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.85  E-value=2.1e-20  Score=202.59  Aligned_cols=168  Identities=30%  Similarity=0.389  Sum_probs=108.2

Q ss_pred             cccEEEcccCCCCCCCCCCCCCccEEEccCCcccccCChhHhhccCCCCCcCeEecCCCCCcccCCcccccCCCCceecc
Q 048402          251 QLLFLSVHSNNMSGPLPLISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILEL  330 (677)
Q Consensus       251 ~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L  330 (677)
                      +|+.|++++|++++. |....+|+.|++++|.+++ +|. +      ..+|+.|++++|++++ +|..   ..+|+.|++
T Consensus       303 ~L~~LdLS~N~L~~L-p~lp~~L~~L~Ls~N~L~~-LP~-l------p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~L  369 (788)
T PRK15387        303 GLQELSVSDNQLASL-PALPSELCKLWAYNNQLTS-LPT-L------PSGLQELSVSDNQLAS-LPTL---PSELYKLWA  369 (788)
T ss_pred             ccceeECCCCccccC-CCCcccccccccccCcccc-ccc-c------ccccceEecCCCccCC-CCCC---Ccccceehh
Confidence            444444444444432 2233455666666666653 221 0      2457777777777763 3432   246677777


Q ss_pred             cCccccccCCcCcCCCCCccEEECcCCcccccCCccCcCCCCCCEEecCCCcccccCChhhhhccCCceEEEcCCCcccc
Q 048402          331 SNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHG  410 (677)
Q Consensus       331 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~  410 (677)
                      ++|++.. +|..   ..+|+.|++++|++++ +|..   .++|+.|++++|.+. .+|..    ..+|+.|++++|+++ 
T Consensus       370 s~N~L~~-LP~l---~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Ls-sIP~l----~~~L~~L~Ls~NqLt-  435 (788)
T PRK15387        370 YNNRLTS-LPAL---PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLT-SLPML----PSGLLSLSVYRNQLT-  435 (788)
T ss_pred             hcccccc-Cccc---ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCC-CCCcc----hhhhhhhhhccCccc-
Confidence            7777773 5542   2467888888888874 4432   357888888888887 56653    346788888888887 


Q ss_pred             cCCccccCCCCCCEEeCCCCcCCCCcCcccccccc
Q 048402          411 PLPTRLCDLAFLQILDLADNNLFGTIPKCINNITG  445 (677)
Q Consensus       411 ~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~  445 (677)
                      .+|..+..+++|+.+++++|++++..|..+..+.+
T Consensus       436 ~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~l~s  470 (788)
T PRK15387        436 RLPESLIHLSSETTVNLEGNPLSERTLQALREITS  470 (788)
T ss_pred             ccChHHhhccCCCeEECCCCCCCchHHHHHHHHhc
Confidence            67888888888999999999888877776644433

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.79  E-value=5.4e-19  Score=193.06  Aligned_cols=244  Identities=26%  Similarity=0.364  Sum_probs=127.2

Q ss_pred             cEEEcccCCCCCCCCCCCCCccEEEccCCcccccCChhHhhccCCCCCcCeEecCCCCCcccCCcccccCCCCceecccC
Q 048402          253 LFLSVHSNNMSGPLPLISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSN  332 (677)
Q Consensus       253 ~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~  332 (677)
                      ..|++++++++..+....+.++.|++++|.++.. |..+      .++|+.|++++|.++ .+|..+.  .+|+.|++++
T Consensus       181 ~~L~L~~~~LtsLP~~Ip~~L~~L~Ls~N~LtsL-P~~l------~~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~  250 (754)
T PRK15370        181 TELRLKILGLTTIPACIPEQITTLILDNNELKSL-PENL------QGNIKTLYANSNQLT-SIPATLP--DTIQEMELSI  250 (754)
T ss_pred             eEEEeCCCCcCcCCcccccCCcEEEecCCCCCcC-Chhh------ccCCCEEECCCCccc-cCChhhh--ccccEEECcC
Confidence            3344444444332222233455555555555432 2211      234555555555555 3333322  2455566666


Q ss_pred             ccccccCCcCcCCCCCccEEECcCCcccccCCccCcCCCCCCEEecCCCcccccCChhhhhccCCceEEEcCCCcccccC
Q 048402          333 NKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPL  412 (677)
Q Consensus       333 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~  412 (677)
                      |.+. .+|..+.  .+|+.|++++|+++ .+|..+.  ++|+.|++++|.+. .+|..+.   ++|+.|++++|+++. +
T Consensus       251 N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp---~sL~~L~Ls~N~Lt~-L  319 (754)
T PRK15370        251 NRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLP---SGITHLNVQSNSLTA-L  319 (754)
T ss_pred             CccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcccch---hhHHHHHhcCCcccc-C
Confidence            6555 3444332  35666666666655 3343332  35666666666665 3443322   355666666666653 3


Q ss_pred             CccccCCCCCCEEeCCCCcCCCCcCccccccccCccccccCcccCccCCCCCCCcccccceeeEeecCCchhhhhhhccc
Q 048402          413 PTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLV  492 (677)
Q Consensus       413 ~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L  492 (677)
                      |..+  .++|+.|++++|.+++ +|..+                                                +++|
T Consensus       320 P~~l--~~sL~~L~Ls~N~Lt~-LP~~l------------------------------------------------~~sL  348 (754)
T PRK15370        320 PETL--PPGLKTLEAGENALTS-LPASL------------------------------------------------PPEL  348 (754)
T ss_pred             Cccc--cccceeccccCCcccc-CChhh------------------------------------------------cCcc
Confidence            3322  2456666666666542 33211                                                1345


Q ss_pred             cEEEcccCcccccCCcccCCCCCCcEEeccCCcceeecccccccCCCCcEEECCCCcccccCccccc----cCCCCCEEE
Q 048402          493 KETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMS----NLMSLNHLN  568 (677)
Q Consensus       493 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~----~l~~L~~L~  568 (677)
                      +.|++++|+++ .+|..+.  ++|++|++++|+++ .+|+.+.  .+|+.|++++|+++ .+|..+.    .++.+..++
T Consensus       349 ~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~  421 (754)
T PRK15370        349 QVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRII  421 (754)
T ss_pred             cEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEE
Confidence            66777777666 3444442  46777777777776 4555444  35777777777776 4454432    346677777


Q ss_pred             cccCccc
Q 048402          569 LSNNKLT  575 (677)
Q Consensus       569 ls~N~l~  575 (677)
                      +.+|+++
T Consensus       422 L~~Npls  428 (754)
T PRK15370        422 VEYNPFS  428 (754)
T ss_pred             eeCCCcc
Confidence            7777765

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.78  E-value=7.7e-19  Score=191.86  Aligned_cols=13  Identities=31%  Similarity=0.330  Sum_probs=6.1

Q ss_pred             CccEEECCCccCc
Q 048402          228 QLKFLDLGLNQFH  240 (677)
Q Consensus       228 ~L~~L~Ls~n~l~  240 (677)
                      .++.|++++|.++
T Consensus       200 ~L~~L~Ls~N~Lt  212 (754)
T PRK15370        200 QITTLILDNNELK  212 (754)
T ss_pred             CCcEEEecCCCCC
Confidence            3444444444444

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.73  E-value=2e-19  Score=183.32  Aligned_cols=162  Identities=27%  Similarity=0.222  Sum_probs=71.4

Q ss_pred             CccEEEccCCcccccCChhHhhccCCCCCcCeEecCCCCCcc------cCCcccccCCCCceecccCccccccCCcCcCC
Q 048402          272 NLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQG------EIPDCWMSYQNLEILELSNNKFTGKLPNSLGS  345 (677)
Q Consensus       272 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  345 (677)
                      +|++++++++.++......++..+...+.+++++++++.+.+      .++..+..+++|+.|++++|.+.+..+..+..
T Consensus        24 ~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~  103 (319)
T cd00116          24 CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLES  103 (319)
T ss_pred             hccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHH
Confidence            345555555544432222333333344555555555554441      12223444555555555555554333333332


Q ss_pred             CCC---ccEEECcCCcccc----cCCccCcCC-CCCCEEecCCCcccccCChhh---hhccCCceEEEcCCCccccc---
Q 048402          346 LTS---LIWLLLGKNRLSG----TIPVSLKNC-TALESLDVGENEFVGNIPTWT---GERFSRMVVLILRSNNFHGP---  411 (677)
Q Consensus       346 l~~---L~~L~l~~n~~~~----~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~---~~~l~~L~~L~L~~n~l~~~---  411 (677)
                      +..   |+.|++++|++++    .+...+..+ ++|+.|++++|.+++.....+   +..++.|++|++++|.+++.   
T Consensus       104 l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  183 (319)
T cd00116         104 LLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIR  183 (319)
T ss_pred             HhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHH
Confidence            222   5555555555542    111223333 555555555555542211111   11234555555555555421   


Q ss_pred             -CCccccCCCCCCEEeCCCCcCC
Q 048402          412 -LPTRLCDLAFLQILDLADNNLF  433 (677)
Q Consensus       412 -~~~~~~~l~~L~~L~Ls~n~l~  433 (677)
                       ++..+..+++|++|++++|.+.
T Consensus       184 ~l~~~l~~~~~L~~L~L~~n~i~  206 (319)
T cd00116         184 ALAEGLKANCNLEVLDLNNNGLT  206 (319)
T ss_pred             HHHHHHHhCCCCCEEeccCCccC
Confidence             1222333445555555555543

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.71  E-value=2.7e-18  Score=175.10  Aligned_cols=210  Identities=22%  Similarity=0.250  Sum_probs=121.0

Q ss_pred             EEEccCCCCceecCCccccCCCCCCEEecCCCCCCCc----cCchhhcCCCCCCEEEccCCcCCc------ccchhhhhc
Q 048402            6 YLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEG----RIPRSMASLCNLKSINLRGVHLSQ------EISEILNIF   75 (677)
Q Consensus         6 ~L~Ls~n~~~~~i~~~~~~~l~~L~~L~Ls~~~~~~~----~~~~~l~~l~~L~~L~l~~n~l~~------~~~~~~~~l   75 (677)
                      .|+|..+.+++.--...+..+++|+.|+++ ++.++.    .++..+...+++++++++++.+.+      .++..+..+
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~-~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~   80 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLE-GNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKG   80 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeec-CCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhc
Confidence            467777777633214455667778888888 655532    245556677778888888877652      233445555


Q ss_pred             cccCcCCccEEEcccCcCccccccccCCCCC---CCEEECcCCcccc----CCCcCCCCC-CCCCEEEccccccccccCh
Q 048402           76 SGCVSIELESLDLRSSSISGHLTDQLGQFKN---LDNLDLANNSIVG----PIPQSLGHL-SNLRVLQIYNNKLNGTLSE  147 (677)
Q Consensus        76 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~---L~~L~L~~n~l~~----~~~~~~~~l-~~L~~L~L~~n~i~~~l~~  147 (677)
                      .     +|++|++++|.+....+..+..+.+   |++|++++|.++.    .+...+..+ ++|+.|++++|.+++....
T Consensus        81 ~-----~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~  155 (319)
T cd00116          81 C-----GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCE  155 (319)
T ss_pred             C-----ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHH
Confidence            5     7888888887776555554544444   7888887777652    222334555 7777777777777632111


Q ss_pred             ---hhhhCCCCCCEEEeeccccceecCCCCCCCcCccEEEeecccCCCCCChhccCCCCCCEEEccCCCCCCccchHH--
Q 048402          148 ---IHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRF--  222 (677)
Q Consensus       148 ---~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~--  222 (677)
                         ..+..+++|+.|++++|.+.+....                    .++..+..+++|++|++++|.+++.....+  
T Consensus       156 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~--------------------~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~  215 (319)
T cd00116         156 ALAKALRANRDLKELNLANNGIGDAGIR--------------------ALAEGLKANCNLEVLDLNNNGLTDEGASALAE  215 (319)
T ss_pred             HHHHHHHhCCCcCEEECcCCCCchHHHH--------------------HHHHHHHhCCCCCEEeccCCccChHHHHHHHH
Confidence               1345556677777776665531110                    112223344566666666665554332222  


Q ss_pred             -HhccCCccEEECCCccCcc
Q 048402          223 -LKSAFQLKFLDLGLNQFHG  241 (677)
Q Consensus       223 -~~~~~~L~~L~Ls~n~l~~  241 (677)
                       +..+++|++|++++|.+.+
T Consensus       216 ~~~~~~~L~~L~ls~n~l~~  235 (319)
T cd00116         216 TLASLKSLEVLNLGDNNLTD  235 (319)
T ss_pred             HhcccCCCCEEecCCCcCch
Confidence             2234556666666666553

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.68  E-value=7.7e-19  Score=147.98  Aligned_cols=182  Identities=22%  Similarity=0.427  Sum_probs=118.7

Q ss_pred             CCCccEEECcCCcccccCCccCcCCCCCCEEecCCCcccccCChhhhhccCCceEEEcCCCcccccCCccccCCCCCCEE
Q 048402          346 LTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQIL  425 (677)
Q Consensus       346 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  425 (677)
                      +..++.|.+++|+++ ..|..++.+.+|+.|++++|++. .+|..+. .++.|+.|++.-|++. ..|..|+.++.|+.|
T Consensus        32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~is-sl~klr~lnvgmnrl~-~lprgfgs~p~levl  107 (264)
T KOG0617|consen   32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSIS-SLPKLRILNVGMNRLN-ILPRGFGSFPALEVL  107 (264)
T ss_pred             hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhh-hchhhhheecchhhhh-cCccccCCCchhhhh
Confidence            334444444444444 33334444555555555555554 4444443 4555555555555554 567777777888888


Q ss_pred             eCCCCcCCC-CcCccccccccCccccccCcccCccCCCCCCCcccccceeeEeecCCchhhhhhhccccEEEcccCcccc
Q 048402          426 DLADNNLFG-TIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTK  504 (677)
Q Consensus       426 ~Ls~n~l~~-~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~  504 (677)
                      |+++|++.. .+|..|..                                              +..|+.|++++|.+. 
T Consensus       108 dltynnl~e~~lpgnff~----------------------------------------------m~tlralyl~dndfe-  140 (264)
T KOG0617|consen  108 DLTYNNLNENSLPGNFFY----------------------------------------------MTTLRALYLGDNDFE-  140 (264)
T ss_pred             hccccccccccCCcchhH----------------------------------------------HHHHHHHHhcCCCcc-
Confidence            888887752 23333332                                              334477788888887 


Q ss_pred             cCCcccCCCCCCcEEeccCCcceeecccccccCCCCcEEECCCCcccccCccccccCC---CCCEEEcccCcccccCCC
Q 048402          505 SIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLM---SLNHLNLSNNKLTGKIPS  580 (677)
Q Consensus       505 ~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~---~L~~L~ls~N~l~~~~p~  580 (677)
                      .+|..++.+++||.|.+.+|.+. ..|..++.++.|++|.+.+|+++ .+|..++++.   +=+.+.+.+|++...|.+
T Consensus       141 ~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~l~~~k~v~r~E~NPwv~pIae  217 (264)
T KOG0617|consen  141 ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLDLVGNKQVMRMEENPWVNPIAE  217 (264)
T ss_pred             cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhhhhhhHHHHhhhhCCCCChHHH
Confidence            77888899999999999999988 78888999999999999999998 7777777653   234566777887654443

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.65  E-value=3.6e-18  Score=143.94  Aligned_cols=182  Identities=31%  Similarity=0.467  Sum_probs=134.6

Q ss_pred             CCCcCeEecCCCCCcccCCcccccCCCCceecccCccccccCCcCcCCCCCccEEECcCCcccccCCccCcCCCCCCEEe
Q 048402          298 PKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLD  377 (677)
Q Consensus       298 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~  377 (677)
                      +..++.|.+++|+++ .+|..+..+.+|+.|++++|++. .+|..+..+++|+.|+++-|++. +.|..|+.++.|+.||
T Consensus        32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levld  108 (264)
T KOG0617|consen   32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLD  108 (264)
T ss_pred             hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhh
Confidence            567788888888888 66777888889999999999888 67888888899999999888887 7888888888899888


Q ss_pred             cCCCcccc-cCChhhhhccCCceEEEcCCCcccccCCccccCCCCCCEEeCCCCcCCCCcCccccccccCccccccCccc
Q 048402          378 VGENEFVG-NIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSS  456 (677)
Q Consensus       378 l~~n~l~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~  456 (677)
                      +..|.+.. .+|..+| .+..|+.|++++|.+. .+|..++++++|+.|.+.+|.+.                       
T Consensus       109 ltynnl~e~~lpgnff-~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-----------------------  163 (264)
T KOG0617|consen  109 LTYNNLNENSLPGNFF-YMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-----------------------  163 (264)
T ss_pred             ccccccccccCCcchh-HHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-----------------------
Confidence            88887763 3555555 5677777777777776 66666777777777766666553                       


Q ss_pred             CccCCCCCCCcccccceeeEeecCCchhhhhhhccccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeeccccccc
Q 048402          457 QQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGA  536 (677)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~  536 (677)
                                                                      .+|..++.++.|++|.+.+|+++ .+|..+++
T Consensus       164 ------------------------------------------------~lpkeig~lt~lrelhiqgnrl~-vlppel~~  194 (264)
T KOG0617|consen  164 ------------------------------------------------SLPKEIGDLTRLRELHIQGNRLT-VLPPELAN  194 (264)
T ss_pred             ------------------------------------------------hCcHHHHHHHHHHHHhcccceee-ecChhhhh
Confidence                                                            56777788888888888888888 66666665


Q ss_pred             CCC---CcEEECCCCcccccCcc
Q 048402          537 MRS---LESIDFSVNQLSGEIPQ  556 (677)
Q Consensus       537 l~~---L~~L~Ls~N~l~~~~p~  556 (677)
                      +.-   =+...+.+|.....+.+
T Consensus       195 l~l~~~k~v~r~E~NPwv~pIae  217 (264)
T KOG0617|consen  195 LDLVGNKQVMRMEENPWVNPIAE  217 (264)
T ss_pred             hhhhhhHHHHhhhhCCCCChHHH
Confidence            422   23444556655433333

>PLN03150 hypothetical protein; Provisional

Probab=99.55  E-value=1.4e-14  Score=158.27  Aligned_cols=117  Identities=38%  Similarity=0.670  Sum_probs=103.4

Q ss_pred             cccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeecccccccCCCCcEEECCCCcccccCccccccCCCCCEEEcc
Q 048402          491 LVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLS  570 (677)
Q Consensus       491 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls  570 (677)
                      .++.|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..++.+++|+.|+|++|++++.+|+.++++++|+.|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            46889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCcccccCCCCC--CCCCcCcccccCC-CCCCCCCCCCCC
Q 048402          571 NNKLTGKIPSST--QLQSFDASSFTGN-DLCGAPLPKNCA  607 (677)
Q Consensus       571 ~N~l~~~~p~~~--~~~~l~~~~~~~n-~l~~~~~~~~c~  607 (677)
                      +|++.|.+|...  .+..+...++.+| .+|+.|....|.
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~  538 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG  538 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence            999999999752  2233445678888 788876555563

>PLN03150 hypothetical protein; Provisional

Probab=99.30  E-value=9e-12  Score=136.39  Aligned_cols=114  Identities=30%  Similarity=0.542  Sum_probs=100.7

Q ss_pred             CCCEEeCCCCcCCCCcCccccccccCccccccCcccCccCCCCCCCcccccceeeEeecCCchhhhhhhccccEEEcccC
Q 048402          421 FLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRN  500 (677)
Q Consensus       421 ~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n  500 (677)
                      .++.|+|++|.+.|.+|..+..+++|                                              +.|+|++|
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L----------------------------------------------~~L~Ls~N  452 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHL----------------------------------------------QSINLSGN  452 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCC----------------------------------------------CEEECCCC
Confidence            36788999999988888777665554                                              89999999


Q ss_pred             cccccCCcccCCCCCCcEEeccCCcceeecccccccCCCCcEEECCCCcccccCccccccC-CCCCEEEcccCcccccCC
Q 048402          501 NLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNL-MSLNHLNLSNNKLTGKIP  579 (677)
Q Consensus       501 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~ls~N~l~~~~p  579 (677)
                      .+.+.+|..++.+++|+.|+|++|++++.+|+.++++++|+.|+|++|++++.+|..+..+ .++..+++++|+..|..|
T Consensus       453 ~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p  532 (623)
T PLN03150        453 SIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP  532 (623)
T ss_pred             cccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence            9999999999999999999999999999999999999999999999999999999988764 577899999999887666


Q ss_pred             C
Q 048402          580 S  580 (677)
Q Consensus       580 ~  580 (677)
                      .
T Consensus       533 ~  533 (623)
T PLN03150        533 G  533 (623)
T ss_pred             C
Confidence            4

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.24  E-value=2.2e-13  Score=136.47  Aligned_cols=193  Identities=27%  Similarity=0.440  Sum_probs=138.3

Q ss_pred             CCceecccCccccccCCcCcCCCCCccEEECcCCcccccCCccCcCCCCCCEEecCCCcccccCChhhhhccCCceEEEc
Q 048402          324 NLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLIL  403 (677)
Q Consensus       324 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L  403 (677)
                      --...|++.|++. .+|..+..+..|+.+.++.|.+. .+|.++.++..|..+|++.|+++ .+|..+.  .--|+.|.+
T Consensus        76 dt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC--~lpLkvli~  150 (722)
T KOG0532|consen   76 DTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLC--DLPLKVLIV  150 (722)
T ss_pred             chhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhh--cCcceeEEE
Confidence            3345677777776 56666777777777777777776 66777777788888888888776 6776665  335788888


Q ss_pred             CCCcccccCCccccCCCCCCEEeCCCCcCCCCcCccccccccCccccccCcccCccCCCCCCCcccccceeeEeecCCch
Q 048402          404 RSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAI  483 (677)
Q Consensus       404 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  483 (677)
                      ++|+++ .+|+.++....|..||.+.|.+. .+|..++.+.+                                      
T Consensus       151 sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~s--------------------------------------  190 (722)
T KOG0532|consen  151 SNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTS--------------------------------------  190 (722)
T ss_pred             ecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHH--------------------------------------
Confidence            888887 56777777788888888888775 44444444333                                      


Q ss_pred             hhhhhhccccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeecccccccCCCCcEEECCCCcccccCccccc---c
Q 048402          484 EYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMS---N  560 (677)
Q Consensus       484 ~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~---~  560 (677)
                              |+.|.+..|++. .+|+++..| .|..||+|.|+++ .+|-.|.+|+.|++|.|.+|.++ ..|..+.   .
T Consensus       191 --------lr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGk  258 (722)
T KOG0532|consen  191 --------LRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGK  258 (722)
T ss_pred             --------HHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccc
Confidence                    467777777777 566666644 4788888888888 78888888888888888888887 6666553   2


Q ss_pred             CCCCCEEEcccCc
Q 048402          561 LMSLNHLNLSNNK  573 (677)
Q Consensus       561 l~~L~~L~ls~N~  573 (677)
                      ..=.++|+..-++
T Consensus       259 VHIFKyL~~qA~q  271 (722)
T KOG0532|consen  259 VHIFKYLSTQACQ  271 (722)
T ss_pred             eeeeeeecchhcc
Confidence            3445677777664

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.18  E-value=2.7e-11  Score=127.09  Aligned_cols=197  Identities=34%  Similarity=0.545  Sum_probs=100.0

Q ss_pred             eEecCCCCCcccCCcccccCCCCceecccCccccccCCcCcCCCC-CccEEECcCCcccccCCccCcCCCCCCEEecCCC
Q 048402          303 GLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLT-SLIWLLLGKNRLSGTIPVSLKNCTALESLDVGEN  381 (677)
Q Consensus       303 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n  381 (677)
                      .++...+.+.... ......+.++.|++.+|.++ .++....... +|+.|++++|++. .+|..+..++.|+.|++++|
T Consensus        97 ~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N  173 (394)
T COG4886          97 SLDLNLNRLRSNI-SELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN  173 (394)
T ss_pred             eeeccccccccCc-hhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence            3555555543211 22334455666666666666 3444444442 5666666666665 33334555666666666666


Q ss_pred             cccccCChhhhhccCCceEEEcCCCcccccCCccccCCCCCCEEeCCCCcCCCCcCccccccccCccccccCcccCccCC
Q 048402          382 EFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLP  461 (677)
Q Consensus       382 ~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~  461 (677)
                      ++. .+|.... ..+.|+.|++++|++. .+|........|+++.+++|                               
T Consensus       174 ~l~-~l~~~~~-~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N-------------------------------  219 (394)
T COG4886         174 DLS-DLPKLLS-NLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNN-------------------------------  219 (394)
T ss_pred             hhh-hhhhhhh-hhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCC-------------------------------
Confidence            655 4443322 2445555555555554 33333233333444444444                               


Q ss_pred             CCCCCcccccceeeEeecCCchhhhhhhccccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeecccccccCCCCc
Q 048402          462 LPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLE  541 (677)
Q Consensus       462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  541 (677)
                                                             .+. ..+..+..+..+..+.+++|++. ..+..++.+++++
T Consensus       220 ---------------------------------------~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~  258 (394)
T COG4886         220 ---------------------------------------SII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLE  258 (394)
T ss_pred             ---------------------------------------cce-ecchhhhhcccccccccCCceee-eccchhccccccc
Confidence                                                   322 23344555555555555555555 3345555556666


Q ss_pred             EEECCCCcccccCccccccCCCCCEEEcccCcccccCC
Q 048402          542 SIDFSVNQLSGEIPQSMSNLMSLNHLNLSNNKLTGKIP  579 (677)
Q Consensus       542 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p  579 (677)
                      +|++++|+++. ++. +..+.+++.|++++|.+....|
T Consensus       259 ~L~~s~n~i~~-i~~-~~~~~~l~~L~~s~n~~~~~~~  294 (394)
T COG4886         259 TLDLSNNQISS-ISS-LGSLTNLRELDLSGNSLSNALP  294 (394)
T ss_pred             eeccccccccc-ccc-ccccCccCEEeccCccccccch
Confidence            66666666652 222 5555666666666665554443

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.16  E-value=2.6e-12  Score=121.67  Aligned_cols=233  Identities=23%  Similarity=0.279  Sum_probs=127.7

Q ss_pred             CCccEEEccCCcccccCChhHhhccCCCCCcCeEecCCCC---CcccCCc-------ccccCCCCceecccCccccccCC
Q 048402          271 SNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNS---LQGEIPD-------CWMSYQNLEILELSNNKFTGKLP  340 (677)
Q Consensus       271 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~---l~~~~~~-------~~~~l~~L~~L~L~~n~l~~~~~  340 (677)
                      ..++++++++|.+...-...++..+...+.|+..++++--   ....+|+       ++..++.|++++||+|-+....+
T Consensus        30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~  109 (382)
T KOG1909|consen   30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGI  109 (382)
T ss_pred             CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccch
Confidence            4566666777766655555566666666666666666531   1112332       23455667777777776654333


Q ss_pred             cC----cCCCCCccEEECcCCcccccCCc-------------cCcCCCCCCEEecCCCcccccCC----hhhhhccCCce
Q 048402          341 NS----LGSLTSLIWLLLGKNRLSGTIPV-------------SLKNCTALESLDVGENEFVGNIP----TWTGERFSRMV  399 (677)
Q Consensus       341 ~~----~~~l~~L~~L~l~~n~~~~~~~~-------------~~~~l~~L~~L~l~~n~l~~~~~----~~~~~~l~~L~  399 (677)
                      ..    +..+..|++|+|.+|.+...-..             ....-++|+++...+|++. ..+    ...++..+.|+
T Consensus       110 ~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrle-n~ga~~~A~~~~~~~~le  188 (382)
T KOG1909|consen  110 RGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLE-NGGATALAEAFQSHPTLE  188 (382)
T ss_pred             HHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccc-cccHHHHHHHHHhccccc
Confidence            32    23456666677766665421111             1223455666666666653 222    11222334444


Q ss_pred             EEEcCCCccccc----CCccccCCCCCCEEeCCCCcCCCCcCccccccccCccccccCcccCccCCCCCCCcccccceee
Q 048402          400 VLILRSNNFHGP----LPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKAS  475 (677)
Q Consensus       400 ~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  475 (677)
                      .+.++.|.+...    +...+..+++|                                                     
T Consensus       189 evr~~qN~I~~eG~~al~eal~~~~~L-----------------------------------------------------  215 (382)
T KOG1909|consen  189 EVRLSQNGIRPEGVTALAEALEHCPHL-----------------------------------------------------  215 (382)
T ss_pred             eEEEecccccCchhHHHHHHHHhCCcc-----------------------------------------------------
Confidence            444444444311    11233444444                                                     


Q ss_pred             EeecCCchhhhhhhccccEEEcccCcccc----cCCcccCCCCCCcEEeccCCcceeeccccc-----ccCCCCcEEECC
Q 048402          476 VVSEGEAIEYDEILNLVKETDVSRNNLTK----SIPLEMTNLKATQSLNFSHNSFTGRIPESI-----GAMRSLESIDFS  546 (677)
Q Consensus       476 ~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~----~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~-----~~l~~L~~L~Ls  546 (677)
                                       +.|||.+|-++.    .+...+..+++|++|++++|.+...-..+|     ...++|+.|.+.
T Consensus       216 -----------------evLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~  278 (382)
T KOG1909|consen  216 -----------------EVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELA  278 (382)
T ss_pred             -----------------eeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccC
Confidence                             444444444432    233456677788888888887764322222     235788888888


Q ss_pred             CCccccc----CccccccCCCCCEEEcccCcc
Q 048402          547 VNQLSGE----IPQSMSNLMSLNHLNLSNNKL  574 (677)
Q Consensus       547 ~N~l~~~----~p~~l~~l~~L~~L~ls~N~l  574 (677)
                      +|.|+..    +...++..+.|..|+|++|.+
T Consensus       279 gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  279 GNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             cchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            8888642    223355678888999999988

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.14  E-value=9.9e-12  Score=114.92  Aligned_cols=132  Identities=23%  Similarity=0.240  Sum_probs=96.0

Q ss_pred             cCCceEEEcCCCcccccCCccccCCCCCCEEeCCCCcCCCCcCccccccccCccccccCcccCccCCCCCCCccccccee
Q 048402          395 FSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKA  474 (677)
Q Consensus       395 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  474 (677)
                      .+.|+.++|++|.++ .+.++..-.|.++.|++++|.+..     +++                                
T Consensus       283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~-----v~n--------------------------------  324 (490)
T KOG1259|consen  283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRT-----VQN--------------------------------  324 (490)
T ss_pred             Hhhhhhccccccchh-hhhhhhhhccceeEEeccccceee-----ehh--------------------------------
Confidence            356788888888887 455667777888888888887741     111                                


Q ss_pred             eEeecCCchhhhhhhccccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeecccccccCCCCcEEECCCCcccccC
Q 048402          475 SVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEI  554 (677)
Q Consensus       475 ~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~  554 (677)
                                 ...+++|+.||||+|.++ .+...-..+.+.+.|.|++|.+...  ..++.+-+|..||+++|+|....
T Consensus       325 -----------La~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ld  390 (490)
T KOG1259|consen  325 -----------LAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELD  390 (490)
T ss_pred             -----------hhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHH
Confidence                       123566688888888887 3444445567788899999988733  45778888999999999987543


Q ss_pred             c-cccccCCCCCEEEcccCcccccC
Q 048402          555 P-QSMSNLMSLNHLNLSNNKLTGKI  578 (677)
Q Consensus       555 p-~~l~~l~~L~~L~ls~N~l~~~~  578 (677)
                      . ..++++|.|+.+.+.+||+.+..
T Consensus       391 eV~~IG~LPCLE~l~L~~NPl~~~v  415 (490)
T KOG1259|consen  391 EVNHIGNLPCLETLRLTGNPLAGSV  415 (490)
T ss_pred             HhcccccccHHHHHhhcCCCccccc
Confidence            2 56888999999999999988653

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.14  E-value=5.8e-11  Score=124.56  Aligned_cols=149  Identities=33%  Similarity=0.418  Sum_probs=116.5

Q ss_pred             cEEEccCCcccccCChhHhhccCCCCCcCeEecCCCCCcccCCcccccCC-CCceecccCccccccCCcCcCCCCCccEE
Q 048402          274 VYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQ-NLEILELSNNKFTGKLPNSLGSLTSLIWL  352 (677)
Q Consensus       274 ~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  352 (677)
                      ..++...+.+.......     ...+.++.|++.+|.++ .++....... +|+.|++++|++. .+|..+..++.|+.|
T Consensus        96 ~~l~~~~~~~~~~~~~~-----~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L  168 (394)
T COG4886          96 PSLDLNLNRLRSNISEL-----LELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNL  168 (394)
T ss_pred             ceeeccccccccCchhh-----hcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhcccccccc
Confidence            36788888774433322     22578999999999998 5666666664 9999999999999 566678999999999


Q ss_pred             ECcCCcccccCCccCcCCCCCCEEecCCCcccccCChhhhhccCCceEEEcCCCcccccCCccccCCCCCCEEeCCCCcC
Q 048402          353 LLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNL  432 (677)
Q Consensus       353 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l  432 (677)
                      ++++|+++ .+|......+.|+.|++++|.+. .+|..+. ....|+++.+++|... ..+..+..+.++..+.+.+|++
T Consensus       169 ~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~-~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~  244 (394)
T COG4886         169 DLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIE-LLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKL  244 (394)
T ss_pred             ccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhh-hhhhhhhhhhcCCcce-ecchhhhhcccccccccCCcee
Confidence            99999999 55555558899999999999998 8887653 3566999999999654 4556677778888888887766


Q ss_pred             C
Q 048402          433 F  433 (677)
Q Consensus       433 ~  433 (677)
                      .
T Consensus       245 ~  245 (394)
T COG4886         245 E  245 (394)
T ss_pred             e
Confidence            4

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.14  E-value=1.8e-12  Score=130.14  Aligned_cols=190  Identities=25%  Similarity=0.406  Sum_probs=122.0

Q ss_pred             eEecCCCCCcccCCcccccCCCCceecccCccccccCCcCcCCCCCccEEECcCCcccccCCccCcCCCCCCEEecCCCc
Q 048402          303 GLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENE  382 (677)
Q Consensus       303 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~  382 (677)
                      ..+++.|++. .+|..+..+..|+.+.+..|.+. .+|..+.++..|+.++++.|+++ .+|..++.|+ |+.|-+++|+
T Consensus        79 ~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNk  154 (722)
T KOG0532|consen   79 FADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNK  154 (722)
T ss_pred             hhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCc
Confidence            4455555555 45555555555555555555555 45555555666666666666655 4444444432 5556666666


Q ss_pred             ccccCChhhhhccCCceEEEcCCCcccccCCccccCCCCCCEEeCCCCcCCCCcCccccccccCccccccCcccCccCCC
Q 048402          383 FVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPL  462 (677)
Q Consensus       383 l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~  462 (677)
                      ++ .+|..++ ..+.|..|+.+.|.+. .+|..++++.+|+.|.+..|++. .+|+++..++                  
T Consensus       155 l~-~lp~~ig-~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp------------------  212 (722)
T KOG0532|consen  155 LT-SLPEEIG-LLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP------------------  212 (722)
T ss_pred             cc-cCCcccc-cchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc------------------
Confidence            64 5665555 5566666666666665 55666677777777777777765 3444333221                  


Q ss_pred             CCCCcccccceeeEeecCCchhhhhhhccccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeeccccc---ccCCC
Q 048402          463 PLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESI---GAMRS  539 (677)
Q Consensus       463 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~---~~l~~  539 (677)
                                                   |..||+|+|++. .+|..|..++.|++|-|.+|.+. ..|..+   +...=
T Consensus       213 -----------------------------Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHI  261 (722)
T KOG0532|consen  213 -----------------------------LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHI  261 (722)
T ss_pred             -----------------------------eeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceee
Confidence                                         478888888888 79999999999999999999998 666654   33444


Q ss_pred             CcEEECCCCc
Q 048402          540 LESIDFSVNQ  549 (677)
Q Consensus       540 L~~L~Ls~N~  549 (677)
                      -++|+..-++
T Consensus       262 FKyL~~qA~q  271 (722)
T KOG0532|consen  262 FKYLSTQACQ  271 (722)
T ss_pred             eeeecchhcc
Confidence            5678888775

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.13  E-value=1.5e-11  Score=119.81  Aligned_cols=180  Identities=25%  Similarity=0.228  Sum_probs=90.3

Q ss_pred             CCCCCCEEEccCCCCCCccchHHHhccCCccEEECCCccCccccCC---ccccccccEEEcccCCCCCCCC----CCCCC
Q 048402          200 SQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQITD---LTKVTQLLFLSVHSNNMSGPLP----LISSN  272 (677)
Q Consensus       200 ~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~---~~~~~~L~~L~l~~n~~~~~~~----~~~~~  272 (677)
                      ++.+|+++.+.++.+...........++.++.|||+.|-+..+.+.   ...+++|+.|+++.|++.....    ..++.
T Consensus       119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~  198 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH  198 (505)
T ss_pred             hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence            3445555555555554433333445555666666666655543221   1223555555555554432211    12456


Q ss_pred             ccEEEccCCcccccCChhHhhccCCCCCcCeEecCCCCCcccCCcccccCCCCceecccCccccccCC--cCcCCCCCcc
Q 048402          273 LVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLP--NSLGSLTSLI  350 (677)
Q Consensus       273 L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~  350 (677)
                      |+.|.++.|.++.   ..+...+..+|+++.|++..|.....-.....-+..|++|||++|.+.. .+  ...+.++.|+
T Consensus       199 lK~L~l~~CGls~---k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~~~~~~~~~l~~L~  274 (505)
T KOG3207|consen  199 LKQLVLNSCGLSW---KDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-FDQGYKVGTLPGLN  274 (505)
T ss_pred             hheEEeccCCCCH---HHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc-cccccccccccchh
Confidence            6666666666652   2222223336677777777764222323334455667777777776652 22  3345566666


Q ss_pred             EEECcCCcccccCCcc------CcCCCCCCEEecCCCcc
Q 048402          351 WLLLGKNRLSGTIPVS------LKNCTALESLDVGENEF  383 (677)
Q Consensus       351 ~L~l~~n~~~~~~~~~------~~~l~~L~~L~l~~n~l  383 (677)
                      .|+++.+.+..+--..      ...+++|++|+++.|++
T Consensus       275 ~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I  313 (505)
T KOG3207|consen  275 QLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI  313 (505)
T ss_pred             hhhccccCcchhcCCCccchhhhcccccceeeecccCcc
Confidence            6666666665331111      12344555555555554

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.08  E-value=1.5e-11  Score=116.69  Aligned_cols=193  Identities=24%  Similarity=0.301  Sum_probs=99.1

Q ss_pred             cCCCCCCEEecCCCCCCC----ccCchhhcCCCCCCEEEccCC---cCCcccchhhhh----ccccCcCCccEEEcccCc
Q 048402           24 GNLTSISRLDLSLNTGPE----GRIPRSMASLCNLKSINLRGV---HLSQEISEILNI----FSGCVSIELESLDLRSSS   92 (677)
Q Consensus        24 ~~l~~L~~L~Ls~~~~~~----~~~~~~l~~l~~L~~L~l~~n---~l~~~~~~~~~~----l~~~~~~~L~~L~L~~n~   92 (677)
                      ..+..++.++|| ++.+.    ..+...+.+.++|+..+++.-   .....+|+.+..    +.+++  +|++||||+|.
T Consensus        27 ~~~~s~~~l~ls-gnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~--~L~~ldLSDNA  103 (382)
T KOG1909|consen   27 EPMDSLTKLDLS-GNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCP--KLQKLDLSDNA  103 (382)
T ss_pred             cccCceEEEecc-CCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCC--ceeEeeccccc
Confidence            345556666666 44333    123344555556666666542   112223333221    11122  56666666666


Q ss_pred             Ccccccc----ccCCCCCCCEEECcCCccccCC-------------CcCCCCCCCCCEEEccccccccccC----hhhhh
Q 048402           93 ISGHLTD----QLGQFKNLDNLDLANNSIVGPI-------------PQSLGHLSNLRVLQIYNNKLNGTLS----EIHFS  151 (677)
Q Consensus        93 l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~-------------~~~~~~l~~L~~L~L~~n~i~~~l~----~~~~~  151 (677)
                      +.-..+.    -+..+..|++|.|.+|.+...-             ......-++|+++....|++. .-+    ...|.
T Consensus       104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrle-n~ga~~~A~~~~  182 (382)
T KOG1909|consen  104 FGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLE-NGGATALAEAFQ  182 (382)
T ss_pred             cCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccc-cccHHHHHHHHH
Confidence            5432222    2345666777777777654111             112344578888888888875 222    12566


Q ss_pred             CCCCCCEEEeeccccceecCCCCCCCcCccEEEeecccCCCCCChhccCCCCCCEEEccCCCCCCccchHHH---hccCC
Q 048402          152 NLTKLSWFRVGGNKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFL---KSAFQ  228 (677)
Q Consensus       152 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~---~~~~~  228 (677)
                      ..+.|+.+.+..|.|.....                    ......+..+++|+.||+.+|.++......+.   ..++.
T Consensus       183 ~~~~leevr~~qN~I~~eG~--------------------~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~  242 (382)
T KOG1909|consen  183 SHPTLEEVRLSQNGIRPEGV--------------------TALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPH  242 (382)
T ss_pred             hccccceEEEecccccCchh--------------------HHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccch
Confidence            77888888888887653211                    01223455666666666666666544333222   22334


Q ss_pred             ccEEECCCccCc
Q 048402          229 LKFLDLGLNQFH  240 (677)
Q Consensus       229 L~~L~Ls~n~l~  240 (677)
                      |+.+++++|.+.
T Consensus       243 L~El~l~dcll~  254 (382)
T KOG1909|consen  243 LRELNLGDCLLE  254 (382)
T ss_pred             heeecccccccc
Confidence            445555554443

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.07  E-value=2.8e-11  Score=118.01  Aligned_cols=209  Identities=19%  Similarity=0.198  Sum_probs=113.7

Q ss_pred             cCCCCCCEEEccCCcCCcccc-hhhhhccccCcCCccEEEcccCcCccc--cccccCCCCCCCEEECcCCccccCCCcC-
Q 048402           49 ASLCNLKSINLRGVHLSQEIS-EILNIFSGCVSIELESLDLRSSSISGH--LTDQLGQFKNLDNLDLANNSIVGPIPQS-  124 (677)
Q Consensus        49 ~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~~~~~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~-  124 (677)
                      .++++|+.+.|.++....... .....++     +++.|||+.|-+...  +......+++|+.|+++.|.+..-.... 
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~-----~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~  192 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIEEYSKILP-----NVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNT  192 (505)
T ss_pred             hhHHhhhheeecCccccccchhhhhhhCC-----cceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccc
Confidence            355666666666665543222 3445555     667777776665543  2233456677777777777665222111 


Q ss_pred             CCCCCCCCEEEccccccccccChhhhhCCCCCCEEEeeccccceecCCCCCCCcCccEEEeecccCCCCC-ChhccCCCC
Q 048402          125 LGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQLVALGFHNCYVGSRF-PQWLHSQKH  203 (677)
Q Consensus       125 ~~~l~~L~~L~L~~n~i~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~-~~~~~~l~~  203 (677)
                      -..+++|+.|.++.|.++..--......++.|+.|++.+|...........-+..|+.|+|++|.+.... -...+.++.
T Consensus       193 ~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~  272 (505)
T KOG3207|consen  193 TLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPG  272 (505)
T ss_pred             hhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccc
Confidence            1245677777777777752222224556677777777777533333333444556677777666654322 233566777


Q ss_pred             CCEEEccCCCCCCccchHH-----HhccCCccEEECCCccCccc--cCCccccccccEEEcccCCC
Q 048402          204 LQYLNLLNSGMSDLFPIRF-----LKSAFQLKFLDLGLNQFHGQ--ITDLTKVTQLLFLSVHSNNM  262 (677)
Q Consensus       204 L~~L~l~~n~i~~~~~~~~-----~~~~~~L~~L~Ls~n~l~~~--~~~~~~~~~L~~L~l~~n~~  262 (677)
                      |..|+++.+++.++.-...     ...+++|++|+++.|++..+  ...+...++|+.|.+..|.+
T Consensus       273 L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~l  338 (505)
T KOG3207|consen  273 LNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYL  338 (505)
T ss_pred             hhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccc
Confidence            7777777777765422111     23456677777777766422  22233334444444444443

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.03  E-value=2.6e-10  Score=101.82  Aligned_cols=129  Identities=24%  Similarity=0.296  Sum_probs=45.6

Q ss_pred             ccCCCCCCEEecCCCCCCCccCchhhc-CCCCCCEEEccCCcCCcccchhhhhccccCcCCccEEEcccCcCcccccccc
Q 048402           23 LGNLTSISRLDLSLNTGPEGRIPRSMA-SLCNLKSINLRGVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQL  101 (677)
Q Consensus        23 ~~~l~~L~~L~Ls~~~~~~~~~~~~l~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~~~~~  101 (677)
                      +.+..+++.|+|+ ++.++..  +.++ .+.+|+.|++++|.|+..  +.+..++     +|++|++++|.++.. .+.+
T Consensus        15 ~~n~~~~~~L~L~-~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~-----~L~~L~L~~N~I~~i-~~~l   83 (175)
T PF14580_consen   15 YNNPVKLRELNLR-GNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLP-----RLKTLDLSNNRISSI-SEGL   83 (175)
T ss_dssp             ------------------------S--TT-TT--EEE-TTS--S----TT----T-----T--EEE--SS---S--CHHH
T ss_pred             ccccccccccccc-ccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChh-----hhhhcccCCCCCCcc-ccch
Confidence            4456677888887 5555432  2344 467788888888887743  2355566     788888888888754 3333


Q ss_pred             -CCCCCCCEEECcCCccccCC-CcCCCCCCCCCEEEccccccccccC--hhhhhCCCCCCEEEee
Q 048402          102 -GQFKNLDNLDLANNSIVGPI-PQSLGHLSNLRVLQIYNNKLNGTLS--EIHFSNLTKLSWFRVG  162 (677)
Q Consensus       102 -~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~i~~~l~--~~~~~~l~~L~~L~l~  162 (677)
                       ..+++|++|++++|.|.... -..+..+++|++|++.+|.+...-.  ...+..+++|+.||-.
T Consensus        84 ~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   84 DKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             HHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred             HHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence             35778888888888876321 2345677888888888888763211  1256778888888743

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.01  E-value=6e-11  Score=109.83  Aligned_cols=201  Identities=22%  Similarity=0.311  Sum_probs=109.3

Q ss_pred             ccccCCCCCCEEecCCCCCCCccCchhhcCCCCCCEEEccCCcCCcc---cchhhhhccccCcCCccEEEccc-CcCccc
Q 048402           21 EALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQE---ISEILNIFSGCVSIELESLDLRS-SSISGH   96 (677)
Q Consensus        21 ~~~~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~---~~~~~~~l~~~~~~~L~~L~L~~-n~l~~~   96 (677)
                      -.+.-+++|..+.+| .+.-. .+-+--..-+.|+++.+.+..++..   .|..          .+....-+. .-.+|.
T Consensus       208 f~l~~f~~l~~~~~s-~~~~~-~i~~~~~~kptl~t~~v~~s~~~~~~~l~pe~----------~~~D~~~~E~~t~~G~  275 (490)
T KOG1259|consen  208 FNLNAFRNLKTLKFS-ALSTE-NIVDIELLKPTLQTICVHNTTIQDVPSLLPET----------ILADPSGSEPSTSNGS  275 (490)
T ss_pred             cchHHhhhhheeeee-ccchh-heeceeecCchhheeeeecccccccccccchh----------hhcCccCCCCCccCCc
Confidence            345567888888888 43222 1111122336788888877655422   1211          111111111 111233


Q ss_pred             cccccCCCCCCCEEECcCCccccCCCcCCCCCCCCCEEEccccccccccChhhhhCCCCCCEEEeeccccceecCCCCCC
Q 048402           97 LTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIP  176 (677)
Q Consensus        97 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  176 (677)
                      ....+.....|+++||++|.|+ .+.++..-.++++.|+++.|.+. .+..  ++.+++|+.||+++|.++         
T Consensus       276 ~~~~~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~n--La~L~~L~~LDLS~N~Ls---------  342 (490)
T KOG1259|consen  276 ALVSADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQN--LAELPQLQLLDLSGNLLA---------  342 (490)
T ss_pred             eEEecchHhhhhhccccccchh-hhhhhhhhccceeEEecccccee-eehh--hhhcccceEeecccchhH---------
Confidence            3334445566777777777776 45566666777777777777775 4443  666777777777777665         


Q ss_pred             CcCccEEEeecccCCCCCChhccCCCCCCEEEccCCCCCCccchHHHhccCCccEEECCCccCccc--cCCccccccccE
Q 048402          177 PFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQ--ITDLTKVTQLLF  254 (677)
Q Consensus       177 ~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~--~~~~~~~~~L~~  254 (677)
                                      .+..|-.++-+++.|.++.|.+.+...   ...+.+|..||+++|+|...  ...+..+|.|+.
T Consensus       343 ----------------~~~Gwh~KLGNIKtL~La~N~iE~LSG---L~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~  403 (490)
T KOG1259|consen  343 ----------------ECVGWHLKLGNIKTLKLAQNKIETLSG---LRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLET  403 (490)
T ss_pred             ----------------hhhhhHhhhcCEeeeehhhhhHhhhhh---hHhhhhheeccccccchhhHHHhcccccccHHHH
Confidence                            222333445556666666665544322   12244566666666666532  334455566666


Q ss_pred             EEcccCCCCCC
Q 048402          255 LSVHSNNMSGP  265 (677)
Q Consensus       255 L~l~~n~~~~~  265 (677)
                      +.+.+|.+.+.
T Consensus       404 l~L~~NPl~~~  414 (490)
T KOG1259|consen  404 LRLTGNPLAGS  414 (490)
T ss_pred             HhhcCCCcccc
Confidence            66666666543

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.00  E-value=6.4e-10  Score=99.27  Aligned_cols=125  Identities=30%  Similarity=0.340  Sum_probs=41.2

Q ss_pred             CccEEEcccCcCccccccccC-CCCCCCEEECcCCccccCCCcCCCCCCCCCEEEccccccccccChhhhhCCCCCCEEE
Q 048402           82 ELESLDLRSSSISGHLTDQLG-QFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFR  160 (677)
Q Consensus        82 ~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~l~~~~~~~l~~L~~L~  160 (677)
                      ++++|+|++|.|+.+  +.++ .+.+|+.|++++|.|+..  +.+..+++|++|++++|.|+ .+++.....+++|+.|+
T Consensus        20 ~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~   94 (175)
T PF14580_consen   20 KLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELY   94 (175)
T ss_dssp             ------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT--EEE
T ss_pred             ccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEE
Confidence            467777777777632  2344 466777777777777643  35667777777777777776 56542234577777777


Q ss_pred             eeccccceecCCCCCCCcCccEEEeecccCCCCCChhccCCCCCCEEEccCCCCCCcc--chHHHhccCCccEEEC
Q 048402          161 VGGNKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLF--PIRFLKSAFQLKFLDL  234 (677)
Q Consensus       161 l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~--~~~~~~~~~~L~~L~L  234 (677)
                      +++|.+....                       .-..++.+++|++|++.+|.++...  ...+...+|+|+.||-
T Consensus        95 L~~N~I~~l~-----------------------~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   95 LSNNKISDLN-----------------------ELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             -TTS---SCC-----------------------CCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred             CcCCcCCChH-----------------------HhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence            7777765321                       1133455666666666666665432  1223445666666663

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.96  E-value=6.4e-10  Score=81.45  Aligned_cols=60  Identities=40%  Similarity=0.574  Sum_probs=35.9

Q ss_pred             CCcEEeccCCcceeecccccccCCCCcEEECCCCcccccCccccccCCCCCEEEcccCcc
Q 048402          515 ATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLSNNKL  574 (677)
Q Consensus       515 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l  574 (677)
                      +|++|++++|+++...++.|.++++|++|++++|.++...|++|..+++|++|++++|++
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            455666666666644445566666666666666666655555666666666666666653

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.92  E-value=1.3e-09  Score=79.78  Aligned_cols=61  Identities=30%  Similarity=0.452  Sum_probs=57.2

Q ss_pred             ccccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeecccccccCCCCcEEECCCCcc
Q 048402          490 NLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQL  550 (677)
Q Consensus       490 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l  550 (677)
                      |+|++|++++|+++...+..|.++++|++|++++|+++...|+.|.++++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            4689999999999988888999999999999999999988888999999999999999986

...

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.88  E-value=2.3e-09  Score=120.07  Aligned_cols=150  Identities=27%  Similarity=0.333  Sum_probs=91.4

Q ss_pred             ccEEEccCCCCceecCCccccCCCCCCEEecCCCCC-CCccCchhhcCCCCCCEEEccCCcCCcccchhhhhccccCcCC
Q 048402            4 LEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTG-PEGRIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVSIE   82 (677)
Q Consensus         4 L~~L~Ls~n~~~~~i~~~~~~~l~~L~~L~Ls~~~~-~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~   82 (677)
                      .+...+.+|.+. .+ +.+ ..+++|++|-+..+.. +....+..|..++.|++|||++|.=-+.+|..++.+-     +
T Consensus       525 ~rr~s~~~~~~~-~~-~~~-~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li-----~  596 (889)
T KOG4658|consen  525 VRRMSLMNNKIE-HI-AGS-SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELV-----H  596 (889)
T ss_pred             eeEEEEeccchh-hc-cCC-CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhh-----h
Confidence            355555566554 33 222 2455677777763321 3333344567777888888877665566777777777     7


Q ss_pred             ccEEEcccCcCccccccccCCCCCCCEEECcCCccccCCCcCCCCCCCCCEEEccccccc-cccChhhhhCCCCCCEEEe
Q 048402           83 LESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLN-GTLSEIHFSNLTKLSWFRV  161 (677)
Q Consensus        83 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~-~~l~~~~~~~l~~L~~L~l  161 (677)
                      |++|++++..++ .+|..+.+++.|.+|++..+.....+|.....+++|++|.+...... +...-..+.++.+|+.+..
T Consensus       597 LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~  675 (889)
T KOG4658|consen  597 LRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSI  675 (889)
T ss_pred             hhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhhee
Confidence            788888777777 56777777777888887777655455666666777887777655421 1111123445555555554


Q ss_pred             e
Q 048402          162 G  162 (677)
Q Consensus       162 ~  162 (677)
                      .
T Consensus       676 ~  676 (889)
T KOG4658|consen  676 T  676 (889)
T ss_pred             e
Confidence            3

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.84  E-value=3.4e-09  Score=118.73  Aligned_cols=131  Identities=24%  Similarity=0.333  Sum_probs=87.8

Q ss_pred             CCCCCCEEecCCCCCCCccCchhhcCCCCCCEEEccCCc--CCcccchhhhhccccCcCCccEEEcccCcCccccccccC
Q 048402           25 NLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVH--LSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLG  102 (677)
Q Consensus        25 ~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~n~--l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~~~~~~  102 (677)
                      .....++..+- ++.+. .++.. ..+++|++|-+..|.  +.....++|..++     .|++|||++|.--+.+|+.++
T Consensus       521 ~~~~~rr~s~~-~~~~~-~~~~~-~~~~~L~tLll~~n~~~l~~is~~ff~~m~-----~LrVLDLs~~~~l~~LP~~I~  592 (889)
T KOG4658|consen  521 SWNSVRRMSLM-NNKIE-HIAGS-SENPKLRTLLLQRNSDWLLEISGEFFRSLP-----LLRVLDLSGNSSLSKLPSSIG  592 (889)
T ss_pred             chhheeEEEEe-ccchh-hccCC-CCCCccceEEEeecchhhhhcCHHHHhhCc-----ceEEEECCCCCccCcCChHHh
Confidence            44566666665 33322 22222 233468888777775  4545555677777     788888887766567788888


Q ss_pred             CCCCCCEEECcCCccccCCCcCCCCCCCCCEEEccccccccccChhhhhCCCCCCEEEeeccc
Q 048402          103 QFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNK  165 (677)
Q Consensus       103 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~l~~~~~~~l~~L~~L~l~~n~  165 (677)
                      .+-+|++|+++.+.+. .+|..++++..|.+|++..+.-...++. ....+.+|++|.+....
T Consensus       593 ~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~-i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  593 ELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPG-ILLELQSLRVLRLPRSA  653 (889)
T ss_pred             hhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccc-hhhhcccccEEEeeccc
Confidence            8888888888888877 6788888888888888877765534433 55567788887776543

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.78  E-value=4.5e-10  Score=117.82  Aligned_cols=223  Identities=26%  Similarity=0.223  Sum_probs=103.7

Q ss_pred             cCCCCCCCEEECcCCccccCCCcCCCCCCCCCEEEccccccccccChhhhhCCCCCCEEEeeccccceecCCCCCCCcCc
Q 048402          101 LGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQL  180 (677)
Q Consensus       101 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L  180 (677)
                      +..+++|+.|++..|.|..+ ...+..+++|++|++++|.|+ .+..  +..++.|+.|++++|.+...  ..+..+..|
T Consensus        91 l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~-~i~~--l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L  164 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKIT-KLEG--LSTLTLLKELNLSGNLISDI--SGLESLKSL  164 (414)
T ss_pred             cccccceeeeeccccchhhc-ccchhhhhcchheeccccccc-cccc--hhhccchhhheeccCcchhc--cCCccchhh
Confidence            33444444444444444421 111344444444444444443 2221  33333444444444444322  112224444


Q ss_pred             cEEEeecccCCCCCC-hhccCCCCCCEEEccCCCCCCccchHHHhccCCccEEECCCccCccccCCccccc--cccEEEc
Q 048402          181 VALGFHNCYVGSRFP-QWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQITDLTKVT--QLLFLSV  257 (677)
Q Consensus       181 ~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~--~L~~L~l  257 (677)
                      +.+++++|.+...-+ . ...+.+++.+.+.+|.+.........   ..+..+++..|.++.. .......  +|+.+++
T Consensus       165 ~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~~~~~---~~l~~~~l~~n~i~~~-~~l~~~~~~~L~~l~l  239 (414)
T KOG0531|consen  165 KLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEGLDLL---KKLVLLSLLDNKISKL-EGLNELVMLHLRELYL  239 (414)
T ss_pred             hcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcccchHHH---HHHHHhhcccccceec-cCcccchhHHHHHHhc
Confidence            444444444443322 1 34556666666666666554333222   2333335555555422 2222222  2666667


Q ss_pred             ccCCCCCC--CCCCCCCccEEEccCCcccccCChhHhhccCCCCCcCeEecCCCCCccc---CCcc-cccCCCCceeccc
Q 048402          258 HSNNMSGP--LPLISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGE---IPDC-WMSYQNLEILELS  331 (677)
Q Consensus       258 ~~n~~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~---~~~~-~~~l~~L~~L~L~  331 (677)
                      ++|.+...  ....+..+..+++.+|++.....      +...+.+..+....+.+...   .... ....+.++...+.
T Consensus       240 ~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (414)
T KOG0531|consen  240 SGNRISRSPEGLENLKNLPVLDLSSNRISNLEG------LERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLE  313 (414)
T ss_pred             ccCccccccccccccccccccchhhcccccccc------ccccchHHHhccCcchhcchhhhhccccccccccccccccc
Confidence            77666643  23335667777777776653321      11234444555555554421   1111 3456677778888


Q ss_pred             CccccccCC
Q 048402          332 NNKFTGKLP  340 (677)
Q Consensus       332 ~n~l~~~~~  340 (677)
                      .|.+....+
T Consensus       314 ~~~~~~~~~  322 (414)
T KOG0531|consen  314 LNPIRKISS  322 (414)
T ss_pred             cCccccccc
Confidence            777664443

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.75  E-value=1.4e-09  Score=114.05  Aligned_cols=246  Identities=26%  Similarity=0.246  Sum_probs=134.1

Q ss_pred             CCCccEEEccCCcccccCChhHhhccCCCCCcCeEecCCCCCcccCCcccccCCCCceecccCccccccCCcCcCCCCCc
Q 048402          270 SSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSL  349 (677)
Q Consensus       270 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  349 (677)
                      +..++.+.+..|.+..     ....+..+++++.+++.+|.+... ...+..+++|++|++++|.|+...+  +..++.|
T Consensus        71 l~~l~~l~l~~n~i~~-----~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L  142 (414)
T KOG0531|consen   71 LTSLKELNLRQNLIAK-----ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLL  142 (414)
T ss_pred             hHhHHhhccchhhhhh-----hhcccccccceeeeeccccchhhc-ccchhhhhcchheeccccccccccc--hhhccch
Confidence            3455555555555542     111233356666666666666532 2224556666666666666663322  4445556


Q ss_pred             cEEECcCCcccccCCccCcCCCCCCEEecCCCcccccCChhhhhccCCceEEEcCCCcccccCCccccCCCCCCEEeCCC
Q 048402          350 IWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLAD  429 (677)
Q Consensus       350 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~  429 (677)
                      +.|++.+|.++..  ..+..++.|+.+++++|++. .+.......+.+++.+.+.+|.+...  ..+..+..+..+++..
T Consensus       143 ~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~-~ie~~~~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~  217 (414)
T KOG0531|consen  143 KELNLSGNLISDI--SGLESLKSLKLLDLSYNRIV-DIENDELSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLD  217 (414)
T ss_pred             hhheeccCcchhc--cCCccchhhhcccCCcchhh-hhhhhhhhhccchHHHhccCCchhcc--cchHHHHHHHHhhccc
Confidence            6666666666532  23444566666666666655 22220012455555666666655422  2222233333345555


Q ss_pred             CcCCCCcCccccccccCccccccCcccCccCCCCCCCcccccceeeEeecCCchhhhhhhc--cccEEEcccCcccccCC
Q 048402          430 NNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILN--LVKETDVSRNNLTKSIP  507 (677)
Q Consensus       430 n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~L~~L~Ls~n~l~~~~~  507 (677)
                      |.++..-+.                                                ..+.  .|+.+++++|++. ..+
T Consensus       218 n~i~~~~~l------------------------------------------------~~~~~~~L~~l~l~~n~i~-~~~  248 (414)
T KOG0531|consen  218 NKISKLEGL------------------------------------------------NELVMLHLRELYLSGNRIS-RSP  248 (414)
T ss_pred             ccceeccCc------------------------------------------------ccchhHHHHHHhcccCccc-ccc
Confidence            544311000                                                0011  3678888888887 343


Q ss_pred             cccCCCCCCcEEeccCCcceeecccccccCCCCcEEECCCCccccc---Cccc-cccCCCCCEEEcccCcccccCC
Q 048402          508 LEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGE---IPQS-MSNLMSLNHLNLSNNKLTGKIP  579 (677)
Q Consensus       508 ~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~---~p~~-l~~l~~L~~L~ls~N~l~~~~p  579 (677)
                      ..+..+..+..|++++|++...  ..+.....+..+....|.+...   .... ....+.++.+.+.+|+.....+
T Consensus       249 ~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (414)
T KOG0531|consen  249 EGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS  322 (414)
T ss_pred             ccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCccccccc
Confidence            5677788888888888887743  3455667777777777776522   1121 4456778888888888765443

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.60  E-value=1.3e-09  Score=112.79  Aligned_cols=182  Identities=27%  Similarity=0.274  Sum_probs=121.8

Q ss_pred             CcCcCCCCCccEEECcCCcccccCCccCcCC-CCCCEEecCCC--ccc-------ccCChhhhhccCCceEEEcCCCccc
Q 048402          340 PNSLGSLTSLIWLLLGKNRLSGTIPVSLKNC-TALESLDVGEN--EFV-------GNIPTWTGERFSRMVVLILRSNNFH  409 (677)
Q Consensus       340 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l-~~L~~L~l~~n--~l~-------~~~~~~~~~~l~~L~~L~L~~n~l~  409 (677)
                      |-.+..+.+|+.|.+.++.+...  ..+..+ .+|+.|...+-  .+.       |.+....  ....|.+.+.+.|.+.
T Consensus       102 pi~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~--~Wn~L~~a~fsyN~L~  177 (1096)
T KOG1859|consen  102 PISIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSP--VWNKLATASFSYNRLV  177 (1096)
T ss_pred             CceeccccceeeEEecCcchhhh--hhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccch--hhhhHhhhhcchhhHH
Confidence            55567788999999999988631  111111 24444443321  010       1111110  1235667777888887


Q ss_pred             ccCCccccCCCCCCEEeCCCCcCCCCcCccccccccCccccccCcccCccCCCCCCCcccccceeeEeecCCchhhhhhh
Q 048402          410 GPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEIL  489 (677)
Q Consensus       410 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  489 (677)
                       ....++.-++.++.|+|++|++..                                                ......+
T Consensus       178 -~mD~SLqll~ale~LnLshNk~~~------------------------------------------------v~~Lr~l  208 (1096)
T KOG1859|consen  178 -LMDESLQLLPALESLNLSHNKFTK------------------------------------------------VDNLRRL  208 (1096)
T ss_pred             -hHHHHHHHHHHhhhhccchhhhhh------------------------------------------------hHHHHhc
Confidence             566778888899999999998751                                                1123346


Q ss_pred             ccccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeecccccccCCCCcEEECCCCcccccCc-cccccCCCCCEEE
Q 048402          490 NLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIP-QSMSNLMSLNHLN  568 (677)
Q Consensus       490 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~  568 (677)
                      +.|++|||++|.+.....-...++. |+.|++++|.++..  ..+.+|.+|+.||+++|-|++.-. .-+..|.+|+.|+
T Consensus       209 ~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~  285 (1096)
T KOG1859|consen  209 PKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLW  285 (1096)
T ss_pred             ccccccccccchhccccccchhhhh-heeeeecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHh
Confidence            7779999999999854444445555 99999999998843  457889999999999999875422 2245667899999


Q ss_pred             cccCccccc
Q 048402          569 LSNNKLTGK  577 (677)
Q Consensus       569 ls~N~l~~~  577 (677)
                      |.+||+.|.
T Consensus       286 LeGNPl~c~  294 (1096)
T KOG1859|consen  286 LEGNPLCCA  294 (1096)
T ss_pred             hcCCccccC
Confidence            999999764

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.55  E-value=1.4e-09  Score=112.59  Aligned_cols=183  Identities=23%  Similarity=0.238  Sum_probs=115.5

Q ss_pred             chhhcCCCCCCEEEccCCcCCcccchhhhhccccCcCCccEEEcccCcCc---cccccc---cCC---CCCCCEEECcCC
Q 048402           45 PRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVSIELESLDLRSSSIS---GHLTDQ---LGQ---FKNLDNLDLANN  115 (677)
Q Consensus        45 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~---~~~~~~---~~~---l~~L~~L~L~~n  115 (677)
                      |-.+..++.||+|.+.++.+..  ...+..+..    .|++|.-++ .++   ..+...   +.+   ...|.+.+.++|
T Consensus       102 pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~----qLe~LIC~~-Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN  174 (1096)
T KOG1859|consen  102 PISIFPFRSLRVLELRGCDLST--AKGLQELRH----QLEKLICHN-SLDALRHVFASCGGDISNSPVWNKLATASFSYN  174 (1096)
T ss_pred             CceeccccceeeEEecCcchhh--hhhhHHHHH----hhhhhhhhc-cHHHHHHHHHHhccccccchhhhhHhhhhcchh
Confidence            5677888899999999887753  111111110    344442221 111   001000   111   124667777777


Q ss_pred             ccccCCCcCCCCCCCCCEEEccccccccccChhhhhCCCCCCEEEeeccccceecCCCCCCCcCccEEEeecccCCCCCC
Q 048402          116 SIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQLVALGFHNCYVGSRFP  195 (677)
Q Consensus       116 ~l~~~~~~~~~~l~~L~~L~L~~n~i~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~  195 (677)
                      .+. .+..++.-++.|+.|+|++|+++ ...  .+..+++|++||+++|.+.....-....+. |..|.+.+|.+...  
T Consensus       175 ~L~-~mD~SLqll~ale~LnLshNk~~-~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL--  247 (1096)
T KOG1859|consen  175 RLV-LMDESLQLLPALESLNLSHNKFT-KVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL--  247 (1096)
T ss_pred             hHH-hHHHHHHHHHHhhhhccchhhhh-hhH--HHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhh--
Confidence            776 56667777778888888888876 333  567778888888888887765554445554 77888888776543  


Q ss_pred             hhccCCCCCCEEEccCCCCCCccchHHHhccCCccEEECCCccCcc
Q 048402          196 QWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHG  241 (677)
Q Consensus       196 ~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~  241 (677)
                      ..+.++++|+.||+++|-+.+.....+...+..|+.|+|.+|.+..
T Consensus       248 ~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c  293 (1096)
T KOG1859|consen  248 RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC  293 (1096)
T ss_pred             hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence            3466788888888888877765444444556678888888887753

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.47  E-value=5.1e-08  Score=90.72  Aligned_cols=207  Identities=23%  Similarity=0.233  Sum_probs=127.5

Q ss_pred             CCCEEEccCCcCCcccc-hhhh-hccccCcCCccEEEcccCcCccc--cccccCCCCCCCEEECcCCccccCCCcCC-CC
Q 048402           53 NLKSINLRGVHLSQEIS-EILN-IFSGCVSIELESLDLRSSSISGH--LTDQLGQFKNLDNLDLANNSIVGPIPQSL-GH  127 (677)
Q Consensus        53 ~L~~L~l~~n~l~~~~~-~~~~-~l~~~~~~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~  127 (677)
                      -+..|-+.++.|..... ..++ .+.     .++++||.+|.++..  +...+.++|.|++|+++.|.+...+ +.+ ..
T Consensus        46 a~ellvln~~~id~~gd~~~~~~~~~-----~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I-~~lp~p  119 (418)
T KOG2982|consen   46 ALELLVLNGSIIDNEGDVMLFGSSVT-----DVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDI-KSLPLP  119 (418)
T ss_pred             chhhheecCCCCCcchhHHHHHHHhh-----hhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcc-ccCccc
Confidence            34455555666543322 1222 344     788899999988743  4455678899999999999887332 233 45


Q ss_pred             CCCCCEEEccccccccccChhhhhCCCCCCEEEeeccccceecCC--CCC-CCcCccEEEeecccCCC--CCChhccCCC
Q 048402          128 LSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRH--DWI-PPFQLVALGFHNCYVGS--RFPQWLHSQK  202 (677)
Q Consensus       128 l~~L~~L~L~~n~i~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~--~~~-~~~~L~~L~l~~n~~~~--~~~~~~~~l~  202 (677)
                      +.+|++|.|.+..+.-.-....+..++.++.|+++.|.+.....+  ... ..+.+..+.+..|...-  .....-.-++
T Consensus       120 ~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fp  199 (418)
T KOG2982|consen  120 LKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFP  199 (418)
T ss_pred             ccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcc
Confidence            678899998888776433344677888888999988855432211  111 12244555554443210  0011122356


Q ss_pred             CCCEEEccCCCCCCccchHHHhccCCccEEECCCccCccc--cCCccccccccEEEcccCCCCCC
Q 048402          203 HLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQ--ITDLTKVTQLLFLSVHSNNMSGP  265 (677)
Q Consensus       203 ~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~--~~~~~~~~~L~~L~l~~n~~~~~  265 (677)
                      ++..+.+..|.+.......-+..++.+..|+|+.+++..+  +..+.++++|..|.++++.+...
T Consensus       200 nv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~  264 (418)
T KOG2982|consen  200 NVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDP  264 (418)
T ss_pred             cchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccccc
Confidence            7777888888777665555555567777888888887654  34566667777777777776543

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.39  E-value=6.4e-09  Score=96.65  Aligned_cols=180  Identities=19%  Similarity=0.119  Sum_probs=106.4

Q ss_pred             CCceecccCccccc-cCCcCcCCCCCccEEECcCCcccccCCccCcCCCCCCEEecCCC-cccccCChhhhhccCCceEE
Q 048402          324 NLEILELSNNKFTG-KLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGEN-EFVGNIPTWTGERFSRMVVL  401 (677)
Q Consensus       324 ~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L  401 (677)
                      .|+.+||++..|+. ..-..+..|.+|+.|.+.++++...+...++.-.+|+.|+++.+ .++..--.-++..+++|..|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            57778887776662 22333556777888888888777666666777778888888776 34433334455567777777


Q ss_pred             EcCCCcccccCCcc-cc-CCCCCCEEeCCCCcCCCCcCccccccccCccccccCcccCccCCCCCCCcccccceeeEeec
Q 048402          402 ILRSNNFHGPLPTR-LC-DLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSE  479 (677)
Q Consensus       402 ~L~~n~l~~~~~~~-~~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  479 (677)
                      +++.|.+....... +. --++|+.|+++++.-.                                              
T Consensus       266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrn----------------------------------------------  299 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRN----------------------------------------------  299 (419)
T ss_pred             CchHhhccchhhhHHHhhhchhhhhhhhhhhHhh----------------------------------------------
Confidence            77777665322111 11 1135566666655310                                              


Q ss_pred             CCchhhhhhhccccEEEcccCcccccCCcccCCCCCCcEEeccCCcc-eeecccccccCCCCcEEECCCCcccccCcccc
Q 048402          480 GEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSF-TGRIPESIGAMRSLESIDFSVNQLSGEIPQSM  558 (677)
Q Consensus       480 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l-~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l  558 (677)
                                     |      ....+..-...+++|.+||||+|.. +...-..|.+++.|++|.++.|..  ++|..+
T Consensus       300 ---------------l------~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~  356 (419)
T KOG2120|consen  300 ---------------L------QKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETL  356 (419)
T ss_pred             ---------------h------hhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHe
Confidence                           0      0001111224456667777776543 222223456778888888888875  456554


Q ss_pred             ---ccCCCCCEEEcccC
Q 048402          559 ---SNLMSLNHLNLSNN  572 (677)
Q Consensus       559 ---~~l~~L~~L~ls~N  572 (677)
                         ...|+|.+||+-++
T Consensus       357 ~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  357 LELNSKPSLVYLDVFGC  373 (419)
T ss_pred             eeeccCcceEEEEeccc
Confidence               45578888888765

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.34  E-value=1.2e-08  Score=94.96  Aligned_cols=178  Identities=22%  Similarity=0.306  Sum_probs=119.5

Q ss_pred             CCCCEEecCCCCCCC-ccCchhhcCCCCCCEEEccCCcCCcccchhhhhccccCcCCccEEEcccC-cCccc-cccccCC
Q 048402           27 TSISRLDLSLNTGPE-GRIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVSIELESLDLRSS-SISGH-LTDQLGQ  103 (677)
Q Consensus        27 ~~L~~L~Ls~~~~~~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n-~l~~~-~~~~~~~  103 (677)
                      +.|++|||| +..++ ..+...+..|.+|+.|.+.|+++.+.+...+..-.     +|+.|+++.+ .++.. ..-.+.+
T Consensus       185 sRlq~lDLS-~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~-----~L~~lnlsm~sG~t~n~~~ll~~s  258 (419)
T KOG2120|consen  185 SRLQHLDLS-NSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNS-----NLVRLNLSMCSGFTENALQLLLSS  258 (419)
T ss_pred             hhhHHhhcc-hhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccc-----cceeeccccccccchhHHHHHHHh
Confidence            358888888 66555 33444567788888888888888877777776666     7888888865 34422 1224567


Q ss_pred             CCCCCEEECcCCccccCCCcC-CCC-CCCCCEEEccccccc---cccChhhhhCCCCCCEEEeeccc-cceecCCCCCCC
Q 048402          104 FKNLDNLDLANNSIVGPIPQS-LGH-LSNLRVLQIYNNKLN---GTLSEIHFSNLTKLSWFRVGGNK-LTLEVRHDWIPP  177 (677)
Q Consensus       104 l~~L~~L~L~~n~l~~~~~~~-~~~-l~~L~~L~L~~n~i~---~~l~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~  177 (677)
                      |+.|..|+++-|.+....... +.+ -++|+.|+++++.-.   ..+. .....+++|..|||+++. ++......|...
T Consensus       259 cs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~-tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf  337 (419)
T KOG2120|consen  259 CSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLS-TLVRRCPNLVHLDLSDSVMLKNDCFQEFFKF  337 (419)
T ss_pred             hhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHH-HHHHhCCceeeeccccccccCchHHHHHHhc
Confidence            888888888888765332221 111 157888888876521   1121 144678889999998764 555445567778


Q ss_pred             cCccEEEeecccCCCCCChh---ccCCCCCCEEEccCCC
Q 048402          178 FQLVALGFHNCYVGSRFPQW---LHSQKHLQYLNLLNSG  213 (677)
Q Consensus       178 ~~L~~L~l~~n~~~~~~~~~---~~~l~~L~~L~l~~n~  213 (677)
                      +.|++|.++.|+.  .+|..   +...|.|.+|++.++-
T Consensus       338 ~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  338 NYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             chheeeehhhhcC--CChHHeeeeccCcceEEEEecccc
Confidence            8899999988874  44544   4577889999998874

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.23  E-value=1.1e-07  Score=87.45  Aligned_cols=113  Identities=23%  Similarity=0.175  Sum_probs=56.7

Q ss_pred             CccEEEccCCcccccCChhHhhccCCCCCcCeEecCCCCCcccCC-----cccccCCCCceecccCcccccc----CCcC
Q 048402          272 NLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIP-----DCWMSYQNLEILELSNNKFTGK----LPNS  342 (677)
Q Consensus       272 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-----~~~~~l~~L~~L~L~~n~l~~~----~~~~  342 (677)
                      .|++.....|++..-........+..-..|+++.+.+|.|....-     ..+..+.+|+.||++.|.++-.    +...
T Consensus       158 ~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~a  237 (388)
T COG5238         158 KLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADA  237 (388)
T ss_pred             CceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHH
Confidence            455555555555433333333333333567777777776552211     1123456777777777766522    2223


Q ss_pred             cCCCCCccEEECcCCcccccCCccC------cCCCCCCEEecCCCccc
Q 048402          343 LGSLTSLIWLLLGKNRLSGTIPVSL------KNCTALESLDVGENEFV  384 (677)
Q Consensus       343 ~~~l~~L~~L~l~~n~~~~~~~~~~------~~l~~L~~L~l~~n~l~  384 (677)
                      +...+.|+.|.+..|-++..-..++      ...++|..|....|.+.
T Consensus       238 l~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~  285 (388)
T COG5238         238 LCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERR  285 (388)
T ss_pred             hcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhc
Confidence            3444556677777666553222211      12455666666665543

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.12  E-value=4.1e-07  Score=84.89  Aligned_cols=111  Identities=14%  Similarity=0.197  Sum_probs=61.5

Q ss_pred             cCCCCCCCEEECcCCccccCC-CcCCC-CCCCCCEEEcccccccc--ccChhhhhCCCCCCEEEeeccccceecCCCCCC
Q 048402          101 LGQFKNLDNLDLANNSIVGPI-PQSLG-HLSNLRVLQIYNNKLNG--TLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIP  176 (677)
Q Consensus       101 ~~~l~~L~~L~L~~n~l~~~~-~~~~~-~l~~L~~L~L~~n~i~~--~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  176 (677)
                      +.....++.|-+.++.|...- ...|+ .++.++.+||.+|.|+.  ++.. .+.+++.|+.|+++.|++...+...-.+
T Consensus        41 v~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~-ile~lP~l~~LNls~N~L~s~I~~lp~p  119 (418)
T KOG2982|consen   41 VSSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGA-ILEQLPALTTLNLSCNSLSSDIKSLPLP  119 (418)
T ss_pred             eccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHH-HHhcCccceEeeccCCcCCCccccCccc
Confidence            333344556666666654221 11122 46788999999998872  2222 5678899999999998887554333245


Q ss_pred             CcCccEEEeecccCCCC-CChhccCCCCCCEEEccCC
Q 048402          177 PFQLVALGFHNCYVGSR-FPQWLHSQKHLQYLNLLNS  212 (677)
Q Consensus       177 ~~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~l~~n  212 (677)
                      ..+|+.|-|.+.++.-. ....+..+|.+++|.++.|
T Consensus       120 ~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N  156 (418)
T KOG2982|consen  120 LKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDN  156 (418)
T ss_pred             ccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccc
Confidence            55555555555444321 1122233444444444444

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.12  E-value=8.9e-07  Score=81.58  Aligned_cols=93  Identities=22%  Similarity=0.309  Sum_probs=52.5

Q ss_pred             hcCCCCCCEEEccCCcCCcccchhhhhccccCcCCccEEEcccCc---Ccccc-------ccccCCCCCCCEEECcCCcc
Q 048402           48 MASLCNLKSINLRGVHLSQEISEILNIFSGCVSIELESLDLRSSS---ISGHL-------TDQLGQFKNLDNLDLANNSI  117 (677)
Q Consensus        48 l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~---l~~~~-------~~~~~~l~~L~~L~L~~n~l  117 (677)
                      +..+..++.++||+|.|...-...+...-.... +|+..+++.--   ....+       -+++.+|++|+..+||.|.+
T Consensus        26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~-~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf  104 (388)
T COG5238          26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVR-NLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF  104 (388)
T ss_pred             HHhhcceeEEeccCCcccHHHHHHHHHHHhhhc-ceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence            444667777777777766443333332211111 56666665421   11111       23456777888888888777


Q ss_pred             ccCCCcC----CCCCCCCCEEEcccccc
Q 048402          118 VGPIPQS----LGHLSNLRVLQIYNNKL  141 (677)
Q Consensus       118 ~~~~~~~----~~~l~~L~~L~L~~n~i  141 (677)
                      ....|..    +++-+.|.+|.+++|.+
T Consensus       105 g~~~~e~L~d~is~~t~l~HL~l~NnGl  132 (388)
T COG5238         105 GSEFPEELGDLISSSTDLVHLKLNNNGL  132 (388)
T ss_pred             CcccchHHHHHHhcCCCceeEEeecCCC
Confidence            6554443    45667777777777766

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.10  E-value=8.4e-08  Score=78.84  Aligned_cols=57  Identities=23%  Similarity=0.419  Sum_probs=26.9

Q ss_pred             cEEEcccCcccccCCcccCCCCCCcEEeccCCcceeecccccccCCCCcEEECCCCccc
Q 048402          493 KETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLS  551 (677)
Q Consensus       493 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~  551 (677)
                      +.+++++|.+. .+|.++..++.|+.|+++.|.+. ..|..+..+.++-.|+..+|.+.
T Consensus        80 t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~  136 (177)
T KOG4579|consen   80 TTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA  136 (177)
T ss_pred             hhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence            34444444444 34444444555555555555544 34444444444445555444444

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.97  E-value=6.4e-06  Score=54.87  Aligned_cols=36  Identities=28%  Similarity=0.552  Sum_probs=17.1

Q ss_pred             CCcEEeccCCcceeecccccccCCCCcEEECCCCccc
Q 048402          515 ATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLS  551 (677)
Q Consensus       515 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~  551 (677)
                      +|++|++++|+++ .+|..++++++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            3455555555555 33444555555555555555554

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.87  E-value=1.1e-05  Score=53.67  Aligned_cols=38  Identities=45%  Similarity=0.755  Sum_probs=32.4

Q ss_pred             CCCcEEECCCCcccccCccccccCCCCCEEEcccCcccc
Q 048402          538 RSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLSNNKLTG  576 (677)
Q Consensus       538 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~  576 (677)
                      ++|++|++++|+|+ .+|..++++++|+.|++++|+++.
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence            57999999999999 567679999999999999999873

...

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.86  E-value=5.1e-05  Score=65.41  Aligned_cols=128  Identities=23%  Similarity=0.308  Sum_probs=71.2

Q ss_pred             ecCCccccCCCCCCEEecCCCCCCCccCchhhcCCCCCCEEEccCCcCCcccchhhhhccccCcCCccEEEcccCcCccc
Q 048402           17 TIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVSIELESLDLRSSSISGH   96 (677)
Q Consensus        17 ~i~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~   96 (677)
                      .++..+|.++++|+.+.+. + .+...-..+|.++++|+.+.+.++ +.......|..+.     +++.+.+.. .+...
T Consensus         2 ~i~~~~F~~~~~l~~i~~~-~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~-----~l~~i~~~~-~~~~i   72 (129)
T PF13306_consen    2 SIGNNAFYNCSNLESITFP-N-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCK-----SLESITFPN-NLKSI   72 (129)
T ss_dssp             EE-TTTTTT-TT--EEEET-S-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-T-----T-EEEEETS-TT-EE
T ss_pred             EECHHHHhCCCCCCEEEEC-C-CeeEeChhhccccccccccccccc-ccccceeeeeccc-----ccccccccc-ccccc
Confidence            3556788889999999987 4 344444567888888999998774 6655666677776     788888865 55445


Q ss_pred             cccccCCCCCCCEEECcCCccccCCCcCCCCCCCCCEEEccccccccccChhhhhCCCCCC
Q 048402           97 LTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLS  157 (677)
Q Consensus        97 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~l~~~~~~~l~~L~  157 (677)
                      ....|..+++|+.+++..+ +.......|.++ +|+.+.+.. .+. .++...|.++++|+
T Consensus        73 ~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~-~i~~~~F~~~~~l~  129 (129)
T PF13306_consen   73 GDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NIT-KIEENAFKNCTKLK  129 (129)
T ss_dssp             -TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-S-S----GGG------
T ss_pred             ccccccccccccccccCcc-ccEEchhhhcCC-CceEEEECC-Ccc-EECCccccccccCC
Confidence            5667888888999888765 554566678787 888888876 444 66777888877764

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.86  E-value=6.7e-06  Score=90.22  Aligned_cols=139  Identities=25%  Similarity=0.356  Sum_probs=76.7

Q ss_pred             CCCCEEecCCCCCCCccCchhhcC-CCCCCEEEccCCcCCc-ccchhhhhccccCcCCccEEEcccCcCccccccccCCC
Q 048402           27 TSISRLDLSLNTGPEGRIPRSMAS-LCNLKSINLRGVHLSQ-EISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQF  104 (677)
Q Consensus        27 ~~L~~L~Ls~~~~~~~~~~~~l~~-l~~L~~L~l~~n~l~~-~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l  104 (677)
                      .+|++||+++...+....|..++. +|.|++|.+++-.+.. ........++     +|..||+|+.+++..  ..++++
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFp-----NL~sLDIS~TnI~nl--~GIS~L  194 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFP-----NLRSLDISGTNISNL--SGISRL  194 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccC-----ccceeecCCCCccCc--HHHhcc
Confidence            566777776544444444444443 6677777776655432 2233334455     677777777766643  456667


Q ss_pred             CCCCEEECcCCcccc-CCCcCCCCCCCCCEEEccccccccc--cCh---hhhhCCCCCCEEEeeccccceecCC
Q 048402          105 KNLDNLDLANNSIVG-PIPQSLGHLSNLRVLQIYNNKLNGT--LSE---IHFSNLTKLSWFRVGGNKLTLEVRH  172 (677)
Q Consensus       105 ~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~i~~~--l~~---~~~~~l~~L~~L~l~~n~l~~~~~~  172 (677)
                      ++|++|.+.+=.+.. ..-..+.+|++|+.||+|.......  +..   ..-..+++|+.||.+++.+......
T Consensus       195 knLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le  268 (699)
T KOG3665|consen  195 KNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILE  268 (699)
T ss_pred             ccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHH
Confidence            777777666554432 1112455677777777775543311  111   0123467777777777766554433

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.83  E-value=7.9e-07  Score=73.24  Aligned_cols=111  Identities=21%  Similarity=0.258  Sum_probs=67.9

Q ss_pred             CCCCEEecCCCCCCCccCch---hhcCCCCCCEEEccCCcCCcccchhhhhccccCcCCccEEEcccCcCccccccccCC
Q 048402           27 TSISRLDLSLNTGPEGRIPR---SMASLCNLKSINLRGVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQ  103 (677)
Q Consensus        27 ~~L~~L~Ls~~~~~~~~~~~---~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~  103 (677)
                      ..+-.+||+ ++.+. .+++   .+....+|+..++++|.+.+.++..-..++     .++.+++++|.++ .+|..+..
T Consensus        27 kE~h~ldLs-sc~lm-~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~-----t~t~lNl~~neis-dvPeE~Aa   98 (177)
T KOG4579|consen   27 KELHFLDLS-SCQLM-YIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFP-----TATTLNLANNEIS-DVPEELAA   98 (177)
T ss_pred             HHhhhcccc-cchhh-HHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccc-----hhhhhhcchhhhh-hchHHHhh
Confidence            445566666 44332 2223   334445666667777777654444444444     5677777777776 45555777


Q ss_pred             CCCCCEEECcCCccccCCCcCCCCCCCCCEEEccccccccccCh
Q 048402          104 FKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSE  147 (677)
Q Consensus       104 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~l~~  147 (677)
                      ++.|+.|+++.|.+. ..|..+..+.++-.|+.-+|.+. .++.
T Consensus        99 m~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~  140 (177)
T KOG4579|consen   99 MPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDV  140 (177)
T ss_pred             hHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcH
Confidence            777777777777776 56666666777777777766665 5554

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.81  E-value=4.4e-05  Score=77.02  Aligned_cols=77  Identities=12%  Similarity=0.129  Sum_probs=51.0

Q ss_pred             cCCCCCccEEECcCCcccccCCccCcCCCCCCEEecCCCcccccCChhhhhccCCceEEEcCCCcccccCCccccCCCCC
Q 048402          343 LGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFL  422 (677)
Q Consensus       343 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  422 (677)
                      +..+..++.|++++|.++ .+|.   -..+|++|.+++|.-...+|..+   .++|+.|++++|.....+|.      +|
T Consensus        48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~sLP~------sL  114 (426)
T PRK15386         48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEISGLPE------SV  114 (426)
T ss_pred             HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh---hhhhhheEccCccccccccc------cc
Confidence            334578889999999877 4451   23469999998865444677644   35788899988833324443      57


Q ss_pred             CEEeCCCCcC
Q 048402          423 QILDLADNNL  432 (677)
Q Consensus       423 ~~L~Ls~n~l  432 (677)
                      +.|+++++..
T Consensus       115 e~L~L~~n~~  124 (426)
T PRK15386        115 RSLEIKGSAT  124 (426)
T ss_pred             ceEEeCCCCC
Confidence            7777776544

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.75  E-value=1.5e-05  Score=87.47  Aligned_cols=136  Identities=20%  Similarity=0.277  Sum_probs=88.7

Q ss_pred             CCCCEEEccCCcCC-cccchhhh-hccccCcCCccEEEcccCcCccc-cccccCCCCCCCEEECcCCccccCCCcCCCCC
Q 048402           52 CNLKSINLRGVHLS-QEISEILN-IFSGCVSIELESLDLRSSSISGH-LTDQLGQFKNLDNLDLANNSIVGPIPQSLGHL  128 (677)
Q Consensus        52 ~~L~~L~l~~n~l~-~~~~~~~~-~l~~~~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  128 (677)
                      .+|++||++|...- ..-+..++ .+|     .|+.|.+++-.+... .-....++++|..||+|++.++..  ..++++
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LP-----sL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~L  194 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLP-----SLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRL  194 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCc-----ccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhcc
Confidence            57888888886532 22233333 345     888888888666432 234456788888888888888744  678888


Q ss_pred             CCCCEEEccccccccccChhhhhCCCCCCEEEeeccccceec------CCCCCCCcCccEEEeecccCCCCC
Q 048402          129 SNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEV------RHDWIPPFQLVALGFHNCYVGSRF  194 (677)
Q Consensus       129 ~~L~~L~L~~n~i~~~l~~~~~~~l~~L~~L~l~~n~l~~~~------~~~~~~~~~L~~L~l~~n~~~~~~  194 (677)
                      ++|++|.+.+=.+...-.-..+.++++|+.||+|........      .+.-..++.|+.|+.+++.+...+
T Consensus       195 knLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~  266 (699)
T KOG3665|consen  195 KNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEI  266 (699)
T ss_pred             ccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHH
Confidence            888888887766652122224667888888888876543322      112244678888888877665543

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.67  E-value=7.3e-05  Score=66.34  Aligned_cols=108  Identities=24%  Similarity=0.316  Sum_probs=75.9

Q ss_pred             CccEEEcccCcCccccccccCCCCCCCEEECcCCccccCCCcCCCCCCCCCEEEccccccc--cccChhhhhCCCCCCEE
Q 048402           82 ELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLN--GTLSEIHFSNLTKLSWF  159 (677)
Q Consensus        82 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~--~~l~~~~~~~l~~L~~L  159 (677)
                      ....+||++|++..  -+.|..+++|.+|.+++|.|+.+.|.--..+++|+.|.|.+|+|.  |.+.  .+..+++|+.|
T Consensus        43 ~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~--pLa~~p~L~~L  118 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLD--PLASCPKLEYL  118 (233)
T ss_pred             ccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcc--hhccCCcccee
Confidence            56788888888863  234788889999999999998776666666788999999999886  2333  36677888888


Q ss_pred             EeeccccceecCCCCCCCcCccEEEeecccCCCCCChhccCCCCCCEEEccCCCC
Q 048402          160 RVGGNKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGM  214 (677)
Q Consensus       160 ~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i  214 (677)
                      .+-+|.++....-                     =--.+..+++|+.||+..-.-
T Consensus       119 tll~Npv~~k~~Y---------------------R~yvl~klp~l~~LDF~kVt~  152 (233)
T KOG1644|consen  119 TLLGNPVEHKKNY---------------------RLYVLYKLPSLRTLDFQKVTR  152 (233)
T ss_pred             eecCCchhcccCc---------------------eeEEEEecCcceEeehhhhhH
Confidence            8888776532210                     011245677788887766543

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.63  E-value=0.00011  Score=65.33  Aligned_cols=105  Identities=21%  Similarity=0.175  Sum_probs=56.7

Q ss_pred             CCceecccCccccccCCcCcCCCCCccEEECcCCcccccCCccCcCCCCCCEEecCCCcccccCChhhhhccCCceEEEc
Q 048402          324 NLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLIL  403 (677)
Q Consensus       324 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L  403 (677)
                      ....+||++|.+..  -+.|..++.|.+|.+++|+|+.+.|.--..+++|..|.+.+|.+..-..-.-...++.|++|.+
T Consensus        43 ~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl  120 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL  120 (233)
T ss_pred             ccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence            44556666665542  1235556666666666666665555444445566666666665541111000114666666666


Q ss_pred             CCCcccccC---CccccCCCCCCEEeCCCC
Q 048402          404 RSNNFHGPL---PTRLCDLAFLQILDLADN  430 (677)
Q Consensus       404 ~~n~l~~~~---~~~~~~l~~L~~L~Ls~n  430 (677)
                      -+|..+..-   -..+..+++|+.||.++=
T Consensus       121 l~Npv~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             cCCchhcccCceeEEEEecCcceEeehhhh
Confidence            666665221   123566777888877653

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.60  E-value=0.0002  Score=72.34  Aligned_cols=92  Identities=17%  Similarity=0.179  Sum_probs=62.0

Q ss_pred             cccCCCCceecccCccccccCCcCcCCCCCccEEECcCCcccccCCccCcCCCCCCEEecCCCcccccCChhhhhccCCc
Q 048402          319 WMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRM  398 (677)
Q Consensus       319 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L  398 (677)
                      +..+.+++.|++++|.++ .+|.   -.++|+.|.+++|.-...+|..+  .++|+.|++++|.....+|       ++|
T Consensus        48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP-------~sL  114 (426)
T PRK15386         48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP-------ESV  114 (426)
T ss_pred             HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc-------ccc
Confidence            445789999999999888 4562   23469999999875544666554  3689999999984322454       357


Q ss_pred             eEEEcCCCcccc--cCCccccCCCCCCEEeCCC
Q 048402          399 VVLILRSNNFHG--PLPTRLCDLAFLQILDLAD  429 (677)
Q Consensus       399 ~~L~L~~n~l~~--~~~~~~~~l~~L~~L~Ls~  429 (677)
                      +.|++..+....  .+|      ++|+.|.+.+
T Consensus       115 e~L~L~~n~~~~L~~LP------ssLk~L~I~~  141 (426)
T PRK15386        115 RSLEIKGSATDSIKNVP------NGLTSLSINS  141 (426)
T ss_pred             ceEEeCCCCCcccccCc------chHhheeccc
Confidence            778887665431  222      2566776644

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.55  E-value=0.00027  Score=60.87  Aligned_cols=36  Identities=11%  Similarity=0.288  Sum_probs=11.8

Q ss_pred             ccCCCCCCCEEECcCCccccCCCcCCCCCCCCCEEEc
Q 048402          100 QLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQI  136 (677)
Q Consensus       100 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  136 (677)
                      +|.++++|+.+++.++ +.......|.++++++.+.+
T Consensus        30 ~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~   65 (129)
T PF13306_consen   30 AFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITF   65 (129)
T ss_dssp             TTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEE
T ss_pred             hccccccccccccccc-ccccceeeeecccccccccc
Confidence            3444444444444332 22222333444434444444

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.41  E-value=4e-06  Score=82.26  Aligned_cols=149  Identities=21%  Similarity=0.132  Sum_probs=86.5

Q ss_pred             ccccEEEcccCCCCCCC-----CCCCCCccEEEccCCcc-cccCChhHhhccCCCCCcCeEecCCCCCcc--cCCccccc
Q 048402          250 TQLLFLSVHSNNMSGPL-----PLISSNLVYLDLSNNSF-SGSVSHYLCYRINEPKSLIGLKLKDNSLQG--EIPDCWMS  321 (677)
Q Consensus       250 ~~L~~L~l~~n~~~~~~-----~~~~~~L~~L~l~~n~l-~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~  321 (677)
                      ..|+.++.+++...+..     -...++|+.+.++.++- +..-...+   -.+++.|+.+++.++....  .+...-.+
T Consensus       294 ~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l---~rn~~~Le~l~~e~~~~~~d~tL~sls~~  370 (483)
T KOG4341|consen  294 HALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTML---GRNCPHLERLDLEECGLITDGTLASLSRN  370 (483)
T ss_pred             hHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhh---hcCChhhhhhcccccceehhhhHhhhccC
Confidence            45566666555432211     12256777888777753 22111111   1346788888888876432  12223347


Q ss_pred             CCCCceecccCccc-cccC----CcCcCCCCCccEEECcCCccc-ccCCccCcCCCCCCEEecCCCcccccCC-hhhhhc
Q 048402          322 YQNLEILELSNNKF-TGKL----PNSLGSLTSLIWLLLGKNRLS-GTIPVSLKNCTALESLDVGENEFVGNIP-TWTGER  394 (677)
Q Consensus       322 l~~L~~L~L~~n~l-~~~~----~~~~~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~  394 (677)
                      ++.|+++.++++.. ++..    ...-.....|+.+.+++++.+ ...-..+..+++|+.+++.++.-...-+ ..+...
T Consensus       371 C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~  450 (483)
T KOG4341|consen  371 CPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATH  450 (483)
T ss_pred             CchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhh
Confidence            88999999998854 3321    222345678999999998754 3334456778999999998885432222 222234


Q ss_pred             cCCceEE
Q 048402          395 FSRMVVL  401 (677)
Q Consensus       395 l~~L~~L  401 (677)
                      +|++++.
T Consensus       451 lp~i~v~  457 (483)
T KOG4341|consen  451 LPNIKVH  457 (483)
T ss_pred             Cccceeh
Confidence            5555543

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.18  E-value=1.9e-05  Score=77.57  Aligned_cols=156  Identities=15%  Similarity=0.027  Sum_probs=100.3

Q ss_pred             CCCccEEEccCCcccccCChhHhhccCCCCCcCeEecCCCC-CcccCCcc-cccCCCCceecccCcccc--ccCCcCcCC
Q 048402          270 SSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNS-LQGEIPDC-WMSYQNLEILELSNNKFT--GKLPNSLGS  345 (677)
Q Consensus       270 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~-~~~l~~L~~L~L~~n~l~--~~~~~~~~~  345 (677)
                      +..|+.++.+++...+.  ..+..-...+.+|+.+.+..++ ++...-.. -.+++.|+.+++..+...  +.+...-.+
T Consensus       293 c~~lq~l~~s~~t~~~d--~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~  370 (483)
T KOG4341|consen  293 CHALQVLCYSSCTDITD--EVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRN  370 (483)
T ss_pred             hhHhhhhcccCCCCCch--HHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccC
Confidence            56789999988865322  2222233457899999999986 33221111 246789999999988543  223333357


Q ss_pred             CCCccEEECcCCcccccC-----CccCcCCCCCCEEecCCCcccccCChhhhhccCCceEEEcCCCccc--ccCCccccC
Q 048402          346 LTSLIWLLLGKNRLSGTI-----PVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFH--GPLPTRLCD  418 (677)
Q Consensus       346 l~~L~~L~l~~n~~~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~  418 (677)
                      ++.|+.+.+++|......     ...-.++..|+.+.+++++....-.......+++|+.+++-+++-.  ..+...-..
T Consensus       371 C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~  450 (483)
T KOG4341|consen  371 CPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATH  450 (483)
T ss_pred             CchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhh
Confidence            899999999988654222     2233567889999999998654433333446889999999888643  223333456


Q ss_pred             CCCCCEEeC
Q 048402          419 LAFLQILDL  427 (677)
Q Consensus       419 l~~L~~L~L  427 (677)
                      ++++++.-+
T Consensus       451 lp~i~v~a~  459 (483)
T KOG4341|consen  451 LPNIKVHAY  459 (483)
T ss_pred             Cccceehhh
Confidence            777766543

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.82  E-value=0.001  Score=61.98  Aligned_cols=108  Identities=22%  Similarity=0.319  Sum_probs=58.4

Q ss_pred             cCCCCCCCEEECcCCccccCCCcCCCCCCCCCEEEcccc--ccccccChhhhhCCCCCCEEEeeccccceecCCCCCCCc
Q 048402          101 LGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNN--KLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPF  178 (677)
Q Consensus       101 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n--~i~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~  178 (677)
                      ...+..|+.|++.+..++..  ..+-.+++|++|.++.|  ++.+.++. ....+++|+++++++|++..  ...+    
T Consensus        39 ~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~v-l~e~~P~l~~l~ls~Nki~~--lstl----  109 (260)
T KOG2739|consen   39 TDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEV-LAEKAPNLKVLNLSGNKIKD--LSTL----  109 (260)
T ss_pred             cccccchhhhhhhccceeec--ccCCCcchhhhhcccCCccccccccee-hhhhCCceeEEeecCCcccc--cccc----
Confidence            33444555566655555422  34556667777777777  44444444 34455667777776666552  1111    


Q ss_pred             CccEEEeecccCCCCCChhccCCCCCCEEEccCCCCCCcc--chHHHhccCCccEEEC
Q 048402          179 QLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLF--PIRFLKSAFQLKFLDL  234 (677)
Q Consensus       179 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~--~~~~~~~~~~L~~L~L  234 (677)
                                       ..+..+.+|..|++.+|..+...  ....+..+++|++|+-
T Consensus       110 -----------------~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~  150 (260)
T KOG2739|consen  110 -----------------RPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG  150 (260)
T ss_pred             -----------------chhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence                             12344555666666666555422  2334455667766654

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.73  E-value=0.00062  Score=63.35  Aligned_cols=78  Identities=28%  Similarity=0.401  Sum_probs=41.6

Q ss_pred             CccEEEcccC--cCccccccccCCCCCCCEEECcCCccccCCCcC---CCCCCCCCEEEccccccccc--cChhhhhCCC
Q 048402           82 ELESLDLRSS--SISGHLTDQLGQFKNLDNLDLANNSIVGPIPQS---LGHLSNLRVLQIYNNKLNGT--LSEIHFSNLT  154 (677)
Q Consensus        82 ~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~l~~L~~L~L~~n~i~~~--l~~~~~~~l~  154 (677)
                      +|++|.++.|  ++++.++.-...+++|++|++++|.+..  ++.   +..+.+|..|++.+|..+..  --...|.-++
T Consensus        66 ~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~  143 (260)
T KOG2739|consen   66 KLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLP  143 (260)
T ss_pred             hhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcchhhhhcccCCccccccHHHHHHHHhh
Confidence            5666666666  4444444344445666666666666541  222   33455566666666655421  1123455667


Q ss_pred             CCCEEEe
Q 048402          155 KLSWFRV  161 (677)
Q Consensus       155 ~L~~L~l  161 (677)
                      +|++|+-
T Consensus       144 ~L~~LD~  150 (260)
T KOG2739|consen  144 SLKYLDG  150 (260)
T ss_pred             hhccccc
Confidence            7776653

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.14  E-value=0.00028  Score=65.84  Aligned_cols=56  Identities=18%  Similarity=0.174  Sum_probs=25.2

Q ss_pred             ccEEEccCCCCceecCCccccCCCCCCEEecCCCCCCCccCchhhcCCCCCCEEEccCCcCC
Q 048402            4 LEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLS   65 (677)
Q Consensus         4 L~~L~Ls~n~~~~~i~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~   65 (677)
                      ++.|+.++|.+. .|  ..+..++.|++|.|| -|.++..  ..+..|++|+.|+|..|.|.
T Consensus        21 vkKLNcwg~~L~-DI--sic~kMp~lEVLsLS-vNkIssL--~pl~rCtrLkElYLRkN~I~   76 (388)
T KOG2123|consen   21 VKKLNCWGCGLD-DI--SICEKMPLLEVLSLS-VNKISSL--APLQRCTRLKELYLRKNCIE   76 (388)
T ss_pred             hhhhcccCCCcc-HH--HHHHhcccceeEEee-ccccccc--hhHHHHHHHHHHHHHhcccc
Confidence            444555555554 22  224445555555555 2322221  23444455555555555444

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=96.02  E-value=1.9e-05  Score=82.86  Aligned_cols=113  Identities=26%  Similarity=0.357  Sum_probs=60.8

Q ss_pred             CCEEecCCCCCCCcc----CchhhcCCCCCCEEEccCCcCCcccchhhhhccccCcCCccEEEcccCcCccc----cccc
Q 048402           29 ISRLDLSLNTGPEGR----IPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVSIELESLDLRSSSISGH----LTDQ  100 (677)
Q Consensus        29 L~~L~Ls~~~~~~~~----~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~----~~~~  100 (677)
                      +.+|+|. ++.+...    +..++....+|..|++++|.+.+.....+...-..+...+++|++..|.+++.    +.+.
T Consensus        89 l~~L~L~-~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~  167 (478)
T KOG4308|consen   89 LLHLSLA-NNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV  167 (478)
T ss_pred             HHHhhhh-hCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence            6667776 4444422    23345666777777777777764433333221111111566677777666543    3445


Q ss_pred             cCCCCCCCEEECcCCcccc----CCCcCC----CCCCCCCEEEccccccc
Q 048402          101 LGQFKNLDNLDLANNSIVG----PIPQSL----GHLSNLRVLQIYNNKLN  142 (677)
Q Consensus       101 ~~~l~~L~~L~L~~n~l~~----~~~~~~----~~l~~L~~L~L~~n~i~  142 (677)
                      +.....++.++++.|.+..    .++..+    ....++++|.+++|.++
T Consensus       168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t  217 (478)
T KOG4308|consen  168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVT  217 (478)
T ss_pred             HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcC
Confidence            5556667777777776531    111222    23556666666666654

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.99  E-value=0.001  Score=71.97  Aligned_cols=131  Identities=22%  Similarity=0.220  Sum_probs=70.5

Q ss_pred             CCCCCCEEecCCCCCCCcc-CchhhcCCCCCCEEEccCC-cCCcccc----hhhhhccccCcCCccEEEcccCc-Ccccc
Q 048402           25 NLTSISRLDLSLNTGPEGR-IPRSMASLCNLKSINLRGV-HLSQEIS----EILNIFSGCVSIELESLDLRSSS-ISGHL   97 (677)
Q Consensus        25 ~l~~L~~L~Ls~~~~~~~~-~~~~l~~l~~L~~L~l~~n-~l~~~~~----~~~~~l~~~~~~~L~~L~L~~n~-l~~~~   97 (677)
                      .++.|+.|.+.....+... +-.....+++|+.|+++++ ......+    .....+.     +|+.|+++++. ++...
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~-----~L~~l~l~~~~~isd~~  260 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICR-----KLKSLDLSGCGLVTDIG  260 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcC-----CcCccchhhhhccCchh
Confidence            4677888877733232211 3344566778888888762 1111111    1223334     77888888776 54332


Q ss_pred             ccccC-CCCCCCEEECcCCc-cccCC-CcCCCCCCCCCEEEcccccccc--ccChhhhhCCCCCCEEEe
Q 048402           98 TDQLG-QFKNLDNLDLANNS-IVGPI-PQSLGHLSNLRVLQIYNNKLNG--TLSEIHFSNLTKLSWFRV  161 (677)
Q Consensus        98 ~~~~~-~l~~L~~L~L~~n~-l~~~~-~~~~~~l~~L~~L~L~~n~i~~--~l~~~~~~~l~~L~~L~l  161 (677)
                      -..+. .+++|++|.+.++. ++... ......+++|++|+++++....  .+.. ...++++++.+.+
T Consensus       261 l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~-~~~~c~~l~~l~~  328 (482)
T KOG1947|consen  261 LSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEA-LLKNCPNLRELKL  328 (482)
T ss_pred             HHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHH-HHHhCcchhhhhh
Confidence            22332 37788888877666 33221 1223456778888888766431  1222 2445666666543

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.96  E-value=0.00033  Score=65.31  Aligned_cols=41  Identities=27%  Similarity=0.263  Sum_probs=21.0

Q ss_pred             ccCCCCCCEEEccCCCCCCccchHHHhccCCccEEECCCcc
Q 048402          198 LHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQ  238 (677)
Q Consensus       198 ~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~  238 (677)
                      +..|++|++|.|..|.|.++.......++++|+.|.|..|.
T Consensus        59 l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENP   99 (388)
T KOG2123|consen   59 LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENP   99 (388)
T ss_pred             HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCC
Confidence            34455555555555555554444444455555555554444

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.57  E-value=0.0066  Score=33.42  Aligned_cols=12  Identities=33%  Similarity=0.465  Sum_probs=5.0

Q ss_pred             CcEEeccCCcce
Q 048402          516 TQSLNFSHNSFT  527 (677)
Q Consensus       516 L~~L~Ls~n~l~  527 (677)
                      |++||+++|+++
T Consensus         2 L~~Ldls~n~l~   13 (22)
T PF00560_consen    2 LEYLDLSGNNLT   13 (22)
T ss_dssp             ESEEEETSSEES
T ss_pred             ccEEECCCCcCE
Confidence            334444444444

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.47  E-value=0.0069  Score=33.37  Aligned_cols=21  Identities=52%  Similarity=0.743  Sum_probs=14.4

Q ss_pred             CCcEEECCCCcccccCcccccc
Q 048402          539 SLESIDFSVNQLSGEIPQSMSN  560 (677)
Q Consensus       539 ~L~~L~Ls~N~l~~~~p~~l~~  560 (677)
                      +|++||+++|+++ .+|..|++
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTTT
T ss_pred             CccEEECCCCcCE-eCChhhcC
Confidence            4677777777777 66665554

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.37  E-value=0.0024  Score=69.13  Aligned_cols=175  Identities=19%  Similarity=0.113  Sum_probs=97.8

Q ss_pred             cCCCCCCEEEccCCc-CCcc-cchhhhhccccCcCCccEEEcccC-cCcccc----ccccCCCCCCCEEECcCCc-cccC
Q 048402           49 ASLCNLKSINLRGVH-LSQE-ISEILNIFSGCVSIELESLDLRSS-SISGHL----TDQLGQFKNLDNLDLANNS-IVGP  120 (677)
Q Consensus        49 ~~l~~L~~L~l~~n~-l~~~-~~~~~~~l~~~~~~~L~~L~L~~n-~l~~~~----~~~~~~l~~L~~L~L~~n~-l~~~  120 (677)
                      ..++.|+.|.+.++. +... ........+     .|+.|+++++ ......    ......+.+|+.|+++++. ++..
T Consensus       185 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~-----~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~  259 (482)
T KOG1947|consen  185 SSCPLLKRLSLSGCSKITDDSLDALALKCP-----NLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDI  259 (482)
T ss_pred             hhCchhhHhhhcccccCChhhHHHHHhhCc-----hhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCch
Confidence            347889999888764 3321 234445555     8999999873 221111    2234566889999999887 5533


Q ss_pred             CCcCCC-CCCCCCEEEccccc-cccccChhhhhCCCCCCEEEeecccccee--cCCCCCCCcCccEEEeecccCCCCCCh
Q 048402          121 IPQSLG-HLSNLRVLQIYNNK-LNGTLSEIHFSNLTKLSWFRVGGNKLTLE--VRHDWIPPFQLVALGFHNCYVGSRFPQ  196 (677)
Q Consensus       121 ~~~~~~-~l~~L~~L~L~~n~-i~~~l~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~~~~L~~L~l~~n~~~~~~~~  196 (677)
                      .-..+. .+++|++|.+.++. ++..--......++.|++|+++++.....  .......+++++.+.+....       
T Consensus       260 ~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~-------  332 (482)
T KOG1947|consen  260 GLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLN-------  332 (482)
T ss_pred             hHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcC-------
Confidence            333333 37899999987776 44332233556788899999998764311  11112335555554443321       


Q ss_pred             hccCCCCCCEEEccCCCCCC--ccchHHHhccCCccEEECCCcc
Q 048402          197 WLHSQKHLQYLNLLNSGMSD--LFPIRFLKSAFQLKFLDLGLNQ  238 (677)
Q Consensus       197 ~~~~l~~L~~L~l~~n~i~~--~~~~~~~~~~~~L~~L~Ls~n~  238 (677)
                         .++.++.+.+.......  .........++.++.+.+..+.
T Consensus       333 ---~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~  373 (482)
T KOG1947|consen  333 ---GCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG  373 (482)
T ss_pred             ---CCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh
Confidence               13344444444332211  1222333456666666666655

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=94.34  E-value=0.00036  Score=73.46  Aligned_cols=162  Identities=26%  Similarity=0.254  Sum_probs=78.2

Q ss_pred             CccEEEccCCcccccCChhHhhccCCC-CCcCeEecCCCCCccc----CCcccccCCCCceecccCccccc----cCCc-
Q 048402          272 NLVYLDLSNNSFSGSVSHYLCYRINEP-KSLIGLKLKDNSLQGE----IPDCWMSYQNLEILELSNNKFTG----KLPN-  341 (677)
Q Consensus       272 ~L~~L~l~~n~l~~~~~~~~~~~~~~~-~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~----~~~~-  341 (677)
                      .|+.|++++|.+.+.....++..+... ..++.|.+..|.++..    +...+.....++.++++.|.+..    .++. 
T Consensus       116 ~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~  195 (478)
T KOG4308|consen  116 TLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQA  195 (478)
T ss_pred             cHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhh
Confidence            444444444444433333333333332 3344455555544432    22233344555555665555431    1111 


Q ss_pred             ---CcCCCCCccEEECcCCcccccC----CccCcCCCC-CCEEecCCCcccccCChhhhh---cc-CCceEEEcCCCccc
Q 048402          342 ---SLGSLTSLIWLLLGKNRLSGTI----PVSLKNCTA-LESLDVGENEFVGNIPTWTGE---RF-SRMVVLILRSNNFH  409 (677)
Q Consensus       342 ---~~~~l~~L~~L~l~~n~~~~~~----~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~---~l-~~L~~L~L~~n~l~  409 (677)
                         .+....++++|.+.+|.++...    ...+...++ +..+++..|.+.+..-.....   .+ ..++.++++.|.++
T Consensus       196 l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~  275 (478)
T KOG4308|consen  196 LESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSIT  275 (478)
T ss_pred             hhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCcc
Confidence               2223556666666666655221    122333444 556777777665331111111   12 45567777777776


Q ss_pred             cc----CCccccCCCCCCEEeCCCCcCC
Q 048402          410 GP----LPTRLCDLAFLQILDLADNNLF  433 (677)
Q Consensus       410 ~~----~~~~~~~l~~L~~L~Ls~n~l~  433 (677)
                      ..    +...+..++.++.+.+++|.+.
T Consensus       276 ~~~~~~L~~~l~~~~~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  276 EKGVRDLAEVLVSCRQLEELSLSNNPLT  303 (478)
T ss_pred             ccchHHHHHHHhhhHHHHHhhcccCccc
Confidence            32    3344556667777888777764

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=91.93  E-value=0.09  Score=26.74  Aligned_cols=9  Identities=33%  Similarity=0.674  Sum_probs=3.0

Q ss_pred             cEEeccCCc
Q 048402          517 QSLNFSHNS  525 (677)
Q Consensus       517 ~~L~Ls~n~  525 (677)
                      ++|++++|+
T Consensus         4 ~~L~l~~n~   12 (17)
T PF13504_consen    4 RTLDLSNNR   12 (17)
T ss_dssp             SEEEETSS-
T ss_pred             CEEECCCCC
Confidence            333333333

...

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=91.65  E-value=0.0059  Score=55.68  Aligned_cols=84  Identities=18%  Similarity=0.185  Sum_probs=71.3

Q ss_pred             hccccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeecccccccCCCCcEEECCCCcccccCccccccCCCCCEEE
Q 048402          489 LNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLN  568 (677)
Q Consensus       489 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  568 (677)
                      ....+.||++.|++. .....|+-++.|..|+++.|.+. ..|+.++++..++.+++.+|..+ ..|.++...+.+++++
T Consensus        41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e  117 (326)
T KOG0473|consen   41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE  117 (326)
T ss_pred             cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence            445678999999887 45567788888899999999988 78888999999999999988888 7888899999999999


Q ss_pred             cccCccc
Q 048402          569 LSNNKLT  575 (677)
Q Consensus       569 ls~N~l~  575 (677)
                      +.+|++.
T Consensus       118 ~k~~~~~  124 (326)
T KOG0473|consen  118 QKKTEFF  124 (326)
T ss_pred             hccCcch
Confidence            9999874

>smart00370 LRR Leucine-rich repeats, outliers

Probab=90.39  E-value=0.21  Score=28.70  Aligned_cols=14  Identities=50%  Similarity=0.638  Sum_probs=8.1

Q ss_pred             CCCcEEECCCCccc
Q 048402          538 RSLESIDFSVNQLS  551 (677)
Q Consensus       538 ~~L~~L~Ls~N~l~  551 (677)
                      ++|++|+|++|+|+
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00370        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            45555666666555

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=90.39  E-value=0.21  Score=28.70  Aligned_cols=14  Identities=50%  Similarity=0.638  Sum_probs=8.1

Q ss_pred             CCCcEEECCCCccc
Q 048402          538 RSLESIDFSVNQLS  551 (677)
Q Consensus       538 ~~L~~L~Ls~N~l~  551 (677)
                      ++|++|+|++|+|+
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00369        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            45555666666555

>smart00370 LRR Leucine-rich repeats, outliers

Probab=90.17  E-value=0.28  Score=28.15  Aligned_cols=21  Identities=43%  Similarity=0.602  Sum_probs=12.6

Q ss_pred             CCCCEEEccccccccccChhhh
Q 048402          129 SNLRVLQIYNNKLNGTLSEIHF  150 (677)
Q Consensus       129 ~~L~~L~L~~n~i~~~l~~~~~  150 (677)
                      ++|++|+|++|.+. .+|...|
T Consensus         2 ~~L~~L~L~~N~l~-~lp~~~f   22 (26)
T smart00370        2 PNLRELDLSNNQLS-SLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCC-cCCHHHc
Confidence            45666666666665 5555444

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=90.17  E-value=0.28  Score=28.15  Aligned_cols=21  Identities=43%  Similarity=0.602  Sum_probs=12.6

Q ss_pred             CCCCEEEccccccccccChhhh
Q 048402          129 SNLRVLQIYNNKLNGTLSEIHF  150 (677)
Q Consensus       129 ~~L~~L~L~~n~i~~~l~~~~~  150 (677)
                      ++|++|+|++|.+. .+|...|
T Consensus         2 ~~L~~L~L~~N~l~-~lp~~~f   22 (26)
T smart00369        2 PNLRELDLSNNQLS-SLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCC-cCCHHHc
Confidence            45666666666665 5555444

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=89.86  E-value=0.013  Score=53.59  Aligned_cols=88  Identities=18%  Similarity=0.214  Sum_probs=69.0

Q ss_pred             hhcCCCCCCEEEccCCcCCcccchhhhhccccCcCCccEEEcccCcCccccccccCCCCCCCEEECcCCccccCCCcCCC
Q 048402           47 SMASLCNLKSINLRGVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLG  126 (677)
Q Consensus        47 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  126 (677)
                      .+......+.||++.|++.. .-..|..+.     .++.++++.|.+. ..|+.++....++++++..|..+ ..|.+++
T Consensus        37 ei~~~kr~tvld~~s~r~vn-~~~n~s~~t-----~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~  108 (326)
T KOG0473|consen   37 EIASFKRVTVLDLSSNRLVN-LGKNFSILT-----RLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQK  108 (326)
T ss_pred             hhhccceeeeehhhhhHHHh-hccchHHHH-----HHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCcccc
Confidence            45667788888888887653 233455566     7888889888887 57888888888889998888887 7788999


Q ss_pred             CCCCCCEEEccccccc
Q 048402          127 HLSNLRVLQIYNNKLN  142 (677)
Q Consensus       127 ~l~~L~~L~L~~n~i~  142 (677)
                      ..++++++++.+|.+.
T Consensus       109 k~~~~k~~e~k~~~~~  124 (326)
T KOG0473|consen  109 KEPHPKKNEQKKTEFF  124 (326)
T ss_pred             ccCCcchhhhccCcch
Confidence            9999999998888765

>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]

Probab=88.76  E-value=1.3  Score=45.32  Aligned_cols=61  Identities=25%  Similarity=0.207  Sum_probs=32.3

Q ss_pred             CCCEEECcCCccccCCCcCCCCC---CCCCEEEcccccccc--ccChhhhhCCCCCCEEEeecccc
Q 048402          106 NLDNLDLANNSIVGPIPQSLGHL---SNLRVLQIYNNKLNG--TLSEIHFSNLTKLSWFRVGGNKL  166 (677)
Q Consensus       106 ~L~~L~L~~n~l~~~~~~~~~~l---~~L~~L~L~~n~i~~--~l~~~~~~~l~~L~~L~l~~n~l  166 (677)
                      .+.+++++.|.....+|..+..+   .-++.++.+...+.-  ......++.-+.+...+++.|..
T Consensus       215 ~lteldls~n~~Kddip~~~n~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~  280 (553)
T KOG4242|consen  215 WLTELDLSTNGGKDDIPRTLNKKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGT  280 (553)
T ss_pred             cccccccccCCCCccchhHHHHhhhhhhhhcccccccccchhhcccccccccccccchhhhccCCC
Confidence            46677777776665555443222   345666666555431  11222344456677777766654

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=86.68  E-value=0.19  Score=28.20  Aligned_cols=14  Identities=43%  Similarity=0.700  Sum_probs=5.7

Q ss_pred             CCCcEEECCCCccc
Q 048402          538 RSLESIDFSVNQLS  551 (677)
Q Consensus       538 ~~L~~L~Ls~N~l~  551 (677)
                      ++|++|+|++|+|+
T Consensus         2 ~~L~~L~l~~n~i~   15 (24)
T PF13516_consen    2 PNLETLDLSNNQIT   15 (24)
T ss_dssp             TT-SEEE-TSSBEH
T ss_pred             CCCCEEEccCCcCC
Confidence            34445555555444

...

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=85.58  E-value=0.34  Score=27.17  Aligned_cols=16  Identities=25%  Similarity=0.509  Sum_probs=7.0

Q ss_pred             CCCCEEEccCCcCCcc
Q 048402           52 CNLKSINLRGVHLSQE   67 (677)
Q Consensus        52 ~~L~~L~l~~n~l~~~   67 (677)
                      ++|++|++++|.|++.
T Consensus         2 ~~L~~L~l~~n~i~~~   17 (24)
T PF13516_consen    2 PNLETLDLSNNQITDE   17 (24)
T ss_dssp             TT-SEEE-TSSBEHHH
T ss_pred             CCCCEEEccCCcCCHH
Confidence            4455555555554443

...

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.27  E-value=0.16  Score=45.77  Aligned_cols=33  Identities=21%  Similarity=0.186  Sum_probs=15.5

Q ss_pred             CceecccCccccccCCcCcCCCCCccEEECcCC
Q 048402          325 LEILELSNNKFTGKLPNSLGSLTSLIWLLLGKN  357 (677)
Q Consensus       325 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n  357 (677)
                      ++.+|-++..|....-+.+.++++++.|.+.+|
T Consensus       103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~c  135 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANC  135 (221)
T ss_pred             EEEEecCCchHHHHHHHHHhccchhhhheeccc
Confidence            444444544444444444444444444444444

>PF15102 TMEM154: TMEM154 protein family

Probab=80.43  E-value=2.5  Score=36.00  Aligned_cols=20  Identities=15%  Similarity=0.157  Sum_probs=11.7

Q ss_pred             HHHHHHhhheeeeccchhhH
Q 048402          639 VGFGCFIGPLIFNRRWRYNY  658 (677)
Q Consensus       639 ~~~~~~~~~~~~~~~~~~~~  658 (677)
                      ++++++++++.|+||||.+-
T Consensus        70 lLLl~vV~lv~~~kRkr~K~   89 (146)
T PF15102_consen   70 LLLLSVVCLVIYYKRKRTKQ   89 (146)
T ss_pred             HHHHHHHHheeEEeecccCC
Confidence            33445555566777777643

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	677
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		3e-35
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		3e-35
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		2e-11
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		2e-09
2omx_A	462	Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX		5e-06
2omt_A	462	Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt		2e-05
2omy_A	461	Crystal Structure Of Inla S192n/hec1 Complex Length		2e-05
2omz_A	466	Crystal Structure Of Inla Y369a/hec1 Complex Length		3e-05
1o6s_A	466	Internalin (Listeria Monocytogenes) E-Cadherin (Hum		3e-05
2omv_A	461	Crystal Structure Of Inla S192n Y369s/hec1 Complex		3e-05
2omu_A	462	Crystal Structure Of Inla G194s+s Y369s/hec1 Comple		3e-05

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  147 bits (370), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 184/665 (27%), Positives = 276/665 (41%), Gaps = 109/665 (16%)
Query: 4   LEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNT-GPEGRIPRSMASLCN-LKSINLRG 61
           L++L++ +N L           L S+  LDLS N+      +   ++  C  LK + + G
Sbjct: 125 LKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISG 184
Query: 62  VHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPI 121
             +S ++       S CV++E   LD+ S++ S  +   LG    L +LD++ N + G  
Sbjct: 185 NKISGDVD-----VSRCVNLEF--LDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDF 236
Query: 122 PQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPF--- 178
            +++   + L++L I +N+  G +  +    L  L +  +  NK T E     IP F   
Sbjct: 237 SRAISTCTELKLLNISSNQFVGPIPPLP---LKSLQYLSLAENKFTGE-----IPDFLSG 288
Query: 179 ---QLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLG 235
               L  L     +     P +  S   L+ L L ++  S   P+  L     LK LDL 
Sbjct: 289 ACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLS 348
Query: 236 LNQFHGQITD-LTKVT-QLLFLSVHSNNMSGP-LPLISSN----LVYLDLSNNSFSGSVS 288
            N+F G++ + LT ++  LL L + SNN SGP LP +  N    L  L L NN F+G + 
Sbjct: 349 FNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP 408
Query: 289 ----------------HYLCYRINEPKSLIGL-KLKD-----NSLQGEIPDCWMSYQNLE 326
                           +YL   I  P SL  L KL+D     N L+GEIP   M  + LE
Sbjct: 409 PTLSNCSELVSLHLSFNYLSGTI--PSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLE 466
Query: 327 ILELSNNKFTGKLPNXXXXXXXXXXXXXGKNRLSGTIPVSLKNCTALESLDVGENEFVGN 386
            L L  N  TG++P+               NRL+G IP  +     L  L +  N F GN
Sbjct: 467 TLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGN 526
Query: 387 IPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGM 446
           IP   G                         D   L  LDL  N   GTIP  +   +G 
Sbjct: 527 IPAELG-------------------------DCRSLIWLDLNTNLFNGTIPAAMFKQSGK 561
Query: 447 VAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKET----------- 495
           +AAN    + ++Y+ +  DG       A  + E + I  +++  L               
Sbjct: 562 IAANFI--AGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGG 619
Query: 496 ---------------DVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSL 540
                          D+S N L+  IP E+ ++     LN  HN  +G IP+ +G +R L
Sbjct: 620 HTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGL 679
Query: 541 ESIDFSVNQLSGEIPQXXXXXXXXXXXXXXXXKLTGKIPSSTQLQSFDASSFTGN-DLCG 599
             +D S N+L G IPQ                 L+G IP   Q ++F  + F  N  LCG
Sbjct: 680 NILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCG 739
Query: 600 APLPK 604
            PLP+
Sbjct: 740 YPLPR 744

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  146 bits (369), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 184/665 (27%), Positives = 276/665 (41%), Gaps = 109/665 (16%)
Query: 4   LEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNT-GPEGRIPRSMASLCN-LKSINLRG 61
           L++L++ +N L           L S+  LDLS N+      +   ++  C  LK + + G
Sbjct: 128 LKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISG 187
Query: 62  VHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPI 121
             +S ++       S CV++E   LD+ S++ S  +   LG    L +LD++ N + G  
Sbjct: 188 NKISGDVD-----VSRCVNLEF--LDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDF 239
Query: 122 PQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPF--- 178
            +++   + L++L I +N+  G +  +    L  L +  +  NK T E     IP F   
Sbjct: 240 SRAISTCTELKLLNISSNQFVGPIPPLP---LKSLQYLSLAENKFTGE-----IPDFLSG 291
Query: 179 ---QLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLG 235
               L  L     +     P +  S   L+ L L ++  S   P+  L     LK LDL 
Sbjct: 292 ACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLS 351
Query: 236 LNQFHGQITD-LTKVT-QLLFLSVHSNNMSGP-LPLISSN----LVYLDLSNNSFSGSVS 288
            N+F G++ + LT ++  LL L + SNN SGP LP +  N    L  L L NN F+G + 
Sbjct: 352 FNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP 411
Query: 289 ----------------HYLCYRINEPKSLIGL-KLKD-----NSLQGEIPDCWMSYQNLE 326
                           +YL   I  P SL  L KL+D     N L+GEIP   M  + LE
Sbjct: 412 PTLSNCSELVSLHLSFNYLSGTI--PSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLE 469
Query: 327 ILELSNNKFTGKLPNXXXXXXXXXXXXXGKNRLSGTIPVSLKNCTALESLDVGENEFVGN 386
            L L  N  TG++P+               NRL+G IP  +     L  L +  N F GN
Sbjct: 470 TLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGN 529
Query: 387 IPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGM 446
           IP   G                         D   L  LDL  N   GTIP  +   +G 
Sbjct: 530 IPAELG-------------------------DCRSLIWLDLNTNLFNGTIPAAMFKQSGK 564
Query: 447 VAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKET----------- 495
           +AAN    + ++Y+ +  DG       A  + E + I  +++  L               
Sbjct: 565 IAANFI--AGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGG 622
Query: 496 ---------------DVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSL 540
                          D+S N L+  IP E+ ++     LN  HN  +G IP+ +G +R L
Sbjct: 623 HTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGL 682
Query: 541 ESIDFSVNQLSGEIPQXXXXXXXXXXXXXXXXKLTGKIPSSTQLQSFDASSFTGN-DLCG 599
             +D S N+L G IPQ                 L+G IP   Q ++F  + F  N  LCG
Sbjct: 683 NILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCG 742
Query: 600 APLPK 604
            PLP+
Sbjct: 743 YPLPR 747

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 68.2 bits (165), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 69/240 (28%), Positives = 110/240 (45%), Gaps = 16/240 (6%)
Query: 208 NLLNSGMSDLFPIRFLKSAFQLKFLDL----GLNQFHGQITD-LTKVTQLLFLSVHSNNM 262
           NL  SG++   P     S   L +L+     G+N   G I   + K+TQL +L +   N+
Sbjct: 54  NLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNV 113
Query: 263 SGPLPLISS---NLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCW 319
           SG +P   S    LV LD S N+ SG++       I+   +L+G+    N + G IPD +
Sbjct: 114 SGAIPDFLSQIKTLVTLDFSYNALSGTLPP----SISSLPNLVGITFDGNRISGAIPDSY 169
Query: 320 MSYQNL-EILELSNNKFTGKLPNXXXXXXXXXXXXXGKNRLSGTIPVSLKNCTALESLDV 378
            S+  L   + +S N+ TGK+P               +N L G   V   +    + + +
Sbjct: 170 GSFSKLFTSMTISRNRLTGKIP-PTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHL 228
Query: 379 GENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPK 438
            +N    ++      +   +  L LR+N  +G LP  L  L FL  L+++ NNL G IP+
Sbjct: 229 AKNSLAFDLGKVGLSK--NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 101/289 (34%), Gaps = 94/289 (32%)
Query: 363 IPVSLKNCTALESLDVGE-NEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAF 421
           IP SL N   L  L +G  N  VG IP     + +++  L +   N  G +P  L  +  
Sbjct: 68  IPSSLANLPYLNFLYIGGINNLVGPIPPAIA-KLTQLHYLYITHTNVSGAIPDFLSQIKT 126
Query: 422 LQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGE 481
           L  LD + N L GT+P  I+++  +V                      +T   + +S   
Sbjct: 127 LVTLDFSYNALSGTLPPSISSLPNLVG---------------------ITFDGNRISGAI 165
Query: 482 AIEYDEILNLVKETDVSRNNLTKSIPLEMTNL-----------------------KATQS 518
              Y     L     +SRN LT  IP    NL                       K TQ 
Sbjct: 166 PDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQK 225
Query: 519 LNFSHNSFT-----------------------GRIPESIGAMRSLESIDFSVNQLSGEIP 555
           ++ + NS                         G +P+ +  ++ L S++ S N L GEIP
Sbjct: 226 IHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
Query: 556 QXXXXXXXXXXXXXXXXKLTGKIPSSTQLQSFDASSFTGND-LCGAPLP 603
           Q                           LQ FD S++  N  LCG+PLP
Sbjct: 286 Q------------------------GGNLQRFDVSAYANNKCLCGSPLP 310

>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 50.1 bits (118), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 80/314 (25%), Positives = 146/314 (46%), Gaps = 53/314 (16%)
Query: 1   FIHLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLR 60
             +L  L+L NN++    D + L NLT+++RL+LS NT  +     +++ L +L+ +N  
Sbjct: 106 LTNLTGLTLFNNQI---TDIDPLKNLTNLNRLELSSNTISD---ISALSGLTSLQQLNFS 159
Query: 61  GVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGP 120
              ++ ++  + N+ +      LE LD+ S+ +S      L +  NL++L   NN I   
Sbjct: 160 SNQVT-DLKPLANLTT------LERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDI 210
Query: 121 IPQSLGHLSNLRVLQIYNNKLN--GTLSEIH-----------------FSNLTKLSWFRV 161
            P  LG L+NL  L +  N+L   GTL+ +                   S LTKL+  ++
Sbjct: 211 TP--LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKL 268
Query: 162 GGNKLTLEVRHDWIPPF----QLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDL 217
           G N+++       I P      L  L  +   +    P  + + K+L YL L  + +SD+
Sbjct: 269 GANQIS------NISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDI 320
Query: 218 FPIRFLKSAFQLKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNNMSGPLPLIS-SNLVYL 276
            P+  L    +L F     N     ++ L  +T + +LS   N +S   PL + + +  L
Sbjct: 321 SPVSSLTKLQRLFF----YNNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQL 376
Query: 277 DLSNNSFSGSVSHY 290
            L++ +++ +  +Y
Sbjct: 377 GLNDQAWTNAPVNY 390

>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 81/314 (25%), Positives = 143/314 (45%), Gaps = 53/314 (16%)
Query: 1   FIHLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLR 60
             +L  L+L NN++    D + L NLT+++RL+LS NT  +      +++L  L S+   
Sbjct: 106 LTNLTGLTLFNNQI---TDIDPLKNLTNLNRLELSSNTISD------ISALSGLTSLQ-- 154
Query: 61  GVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGP 120
              LS   +++ ++        LE LD+ S+ +S      L +  NL++L   NN I   
Sbjct: 155 --QLSFSSNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDI 210
Query: 121 IPQSLGHLSNLRVLQIYNNKLN--GTLSEIH-----------------FSNLTKLSWFRV 161
            P  LG L+NL  L +  N+L   GTL+ +                   S LTKL+  ++
Sbjct: 211 TP--LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKL 268
Query: 162 GGNKLTLEVRHDWIPPF----QLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDL 217
           G N+++       I P      L  L  +   +    P  + + K+L YL L  + +SD+
Sbjct: 269 GANQIS------NISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDI 320
Query: 218 FPIRFLKSAFQLKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNNMSGPLPLIS-SNLVYL 276
            P+  L    +L F     N     ++ L  +T + +LS   N +S   PL + + +  L
Sbjct: 321 SPVSSLTKLQRLFF----YNNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQL 376
Query: 277 DLSNNSFSGSVSHY 290
            L++ +++ +  +Y
Sbjct: 377 GLNDQAWTNAPVNY 390

>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex Length = 461

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 80/314 (25%), Positives = 146/314 (46%), Gaps = 54/314 (17%)
Query: 1   FIHLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLR 60
             +L  L+L NN++    D + L NLT+++RL+LS NT  +      +++L  L S  L+
Sbjct: 106 LTNLTGLTLFNNQI---TDIDPLKNLTNLNRLELSSNTISD------ISALSGLTS--LQ 154
Query: 61  GVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGP 120
            ++   +++++  + +      LE LD+ S+ +S      L +  NL++L   NN I   
Sbjct: 155 QLNFGNQVTDLKPLANLTT---LERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDI 209
Query: 121 IPQSLGHLSNLRVLQIYNNKLN--GTLSEIH-----------------FSNLTKLSWFRV 161
            P  LG L+NL  L +  N+L   GTL+ +                   S LTKL+  ++
Sbjct: 210 TP--LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKL 267
Query: 162 GGNKLTLEVRHDWIPPF----QLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDL 217
           G N+++       I P      L  L  +   +    P  + + K+L YL L  + +SD+
Sbjct: 268 GANQIS------NISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDI 319
Query: 218 FPIRFLKSAFQLKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNNMSGPLPLIS-SNLVYL 276
            P+  L    +L F     N     ++ L  +T + +LS   N +S   PL + + +  L
Sbjct: 320 SPVSSLTKLQRLFF----YNNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQL 375
Query: 277 DLSNNSFSGSVSHY 290
            L++ +++ +  +Y
Sbjct: 376 GLNDQAWTNAPVNY 389

>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex Length = 466

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 80/314 (25%), Positives = 145/314 (46%), Gaps = 54/314 (17%)
Query: 1   FIHLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLR 60
             +L  L+L NN++    D + L NLT+++RL+LS NT  +      +++L  L S  L+
Sbjct: 110 LTNLTGLTLFNNQI---TDIDPLKNLTNLNRLELSSNTISD------ISALSGLTS--LQ 158
Query: 61  GVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGP 120
            +    +++++  + +      LE LD+ S+ +S      L +  NL++L   NN I   
Sbjct: 159 QLSFGNQVTDLKPLANLTT---LERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDI 213
Query: 121 IPQSLGHLSNLRVLQIYNNKLN--GTLSEIH-----------------FSNLTKLSWFRV 161
            P  LG L+NL  L +  N+L   GTL+ +                   S LTKL+  ++
Sbjct: 214 TP--LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKL 271
Query: 162 GGNKLTLEVRHDWIPPF----QLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDL 217
           G N+++       I P      L  L  +   +    P  + + K+L YL L  + +SD+
Sbjct: 272 GANQIS------NISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDI 323
Query: 218 FPIRFLKSAFQLKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNNMSGPLPLIS-SNLVYL 276
            P+  L    +L F     N     ++ L  +T + +LS   N +S   PL + + +  L
Sbjct: 324 SPVSSLTKLQRLFF----ANNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQL 379
Query: 277 DLSNNSFSGSVSHY 290
            L++ +++ +  +Y
Sbjct: 380 GLNDQAWTNAPVNY 393

>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human) Recognition Complex Length = 466

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 80/314 (25%), Positives = 145/314 (46%), Gaps = 54/314 (17%)
Query: 1   FIHLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLR 60
             +L  L+L NN++    D + L NLT+++RL+LS NT  +      +++L  L S  L+
Sbjct: 111 LTNLTGLTLFNNQI---TDIDPLKNLTNLNRLELSSNTISD------ISALSGLTS--LQ 159
Query: 61  GVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGP 120
            +    +++++  + +      LE LD+ S+ +S      L +  NL++L   NN I   
Sbjct: 160 QLSFGNQVTDLKPLANLTT---LERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDI 214
Query: 121 IPQSLGHLSNLRVLQIYNNKLN--GTLSEIH-----------------FSNLTKLSWFRV 161
            P  LG L+NL  L +  N+L   GTL+ +                   S LTKL+  ++
Sbjct: 215 TP--LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKL 272
Query: 162 GGNKLTLEVRHDWIPPF----QLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDL 217
           G N+++       I P      L  L  +   +    P  + + K+L YL L  + +SD+
Sbjct: 273 GANQIS------NISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDI 324
Query: 218 FPIRFLKSAFQLKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNNMSGPLPLIS-SNLVYL 276
            P+  L    +L F     N     ++ L  +T + +LS   N +S   PL + + +  L
Sbjct: 325 SPVSSLTKLQRLFF----YNNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQL 380
Query: 277 DLSNNSFSGSVSHY 290
            L++ +++ +  +Y
Sbjct: 381 GLNDQAWTNAPVNY 394

>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex Length = 461

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 80/314 (25%), Positives = 146/314 (46%), Gaps = 54/314 (17%)
Query: 1   FIHLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLR 60
             +L  L+L NN++    D + L NLT+++RL+LS NT  +      +++L  L S  L+
Sbjct: 106 LTNLTGLTLFNNQI---TDIDPLKNLTNLNRLELSSNTISD------ISALSGLTS--LQ 154
Query: 61  GVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGP 120
            ++   +++++  + +      LE LD+ S+ +S      L +  NL++L   NN I   
Sbjct: 155 QLNFGNQVTDLKPLANLTT---LERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDI 209
Query: 121 IPQSLGHLSNLRVLQIYNNKLN--GTLSEIH-----------------FSNLTKLSWFRV 161
            P  LG L+NL  L +  N+L   GTL+ +                   S LTKL+  ++
Sbjct: 210 TP--LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKL 267
Query: 162 GGNKLTLEVRHDWIPPF----QLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDL 217
           G N+++       I P      L  L  +   +    P  + + K+L YL L  + +SD+
Sbjct: 268 GANQIS------NISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDI 319
Query: 218 FPIRFLKSAFQLKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNNMSGPLPLIS-SNLVYL 276
            P+  L    +L F     N     ++ L  +T + +LS   N +S   PL + + +  L
Sbjct: 320 SPVSSLTKLQRLFF----SNNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQL 375
Query: 277 DLSNNSFSGSVSHY 290
            L++ +++ +  +Y
Sbjct: 376 GLNDQAWTNAPVNY 389

>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 81/314 (25%), Positives = 143/314 (45%), Gaps = 53/314 (16%)
Query: 1   FIHLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLR 60
             +L  L+L NN++    D + L NLT+++RL+LS NT  +      +++L  L S+   
Sbjct: 106 LTNLTGLTLFNNQI---TDIDPLKNLTNLNRLELSSNTISD------ISALSGLTSLQ-- 154
Query: 61  GVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGP 120
              LS   +++ ++        LE LD+ S+ +S      L +  NL++L   NN I   
Sbjct: 155 --QLSFSSNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDI 210
Query: 121 IPQSLGHLSNLRVLQIYNNKLN--GTLSEIH-----------------FSNLTKLSWFRV 161
            P  LG L+NL  L +  N+L   GTL+ +                   S LTKL+  ++
Sbjct: 211 TP--LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKL 268
Query: 162 GGNKLTLEVRHDWIPPF----QLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDL 217
           G N+++       I P      L  L  +   +    P  + + K+L YL L  + +SD+
Sbjct: 269 GANQIS------NISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDI 320
Query: 218 FPIRFLKSAFQLKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNNMSGPLPLIS-SNLVYL 276
            P+  L    +L F     N     ++ L  +T + +LS   N +S   PL + + +  L
Sbjct: 321 SPVSSLTKLQRLFF----SNNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQL 376
Query: 277 DLSNNSFSGSVSHY 290
            L++ +++ +  +Y
Sbjct: 377 GLNDQAWTNAPVNY 390

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	677
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-130
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-101
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-93
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-67
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-42
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-41
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-32
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-30
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	9e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-62
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-60
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-59
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-51
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-40
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-22
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-62
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-52
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-43
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-43
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-36
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-13
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-60
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-51
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-47
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-28
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-26
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-24
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-13
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-54
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-44
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-41
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-39
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-31
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-28
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-22
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-45
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-33
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-25
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-19
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-45
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-39
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-22
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-16
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-35
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-26
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-32
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-27
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-26
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-15
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-12
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-30
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-30
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-30
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-29
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-29
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-20
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-17
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-30
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-24
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-24
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-21
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-18
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-29
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-28
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-27
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-22
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-16
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-26
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-21
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-17
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-10
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-08
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-08
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-25
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-21
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-17
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-15
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-15
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-14
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-24
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-20
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-16
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	8e-13
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-10
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-07
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-24
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-23
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	9e-21
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-17
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	9e-14
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-12
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-23
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-21
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-17
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	9e-16
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-14
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-22
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-17
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-17
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-16
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-16
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-14
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-21
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-21
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-20
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-17
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-17
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-21
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	8e-21
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-14
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-20
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-20
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-18
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-08
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-18
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	9e-13
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-12
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	6e-11
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	6e-06
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-17
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-17
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-17
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-15
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-10
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-09
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-06
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-17
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-16
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-16
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-17
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-13
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-12
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-12
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-11
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-11
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-10
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-08
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-17
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-14
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	9e-14
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-13
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-08
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-16
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-15
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-15
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-14
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-07
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-07
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	8e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	9e-16
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-15
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-13
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-13
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	9e-16
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-13
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-13
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-13
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-12
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	8e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-15
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-14
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-13
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-12
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-11
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-09
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-15
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-11
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-09
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	8e-07
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-15
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-15
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-13
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-13
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-10
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-14
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-13
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-13
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-12
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-12
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-14
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-13
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-12
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-10
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-14
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-11
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-11
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-10
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-10
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	7e-10
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-07
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	9e-14
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	9e-14
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-13
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-08
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-12
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	7e-12
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-09
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	6e-08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	7e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-10
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-10
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	8e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	4e-09
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-08
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	4e-07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	6e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	8e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	6e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	6e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	5e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	4e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	6e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	7e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	5e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	7e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	9e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	8e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	8e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	8e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	8e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	3e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	2e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	2e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	5e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	9e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  401 bits (1033), Expect = e-130
 Identities = 164/616 (26%), Positives = 252/616 (40%), Gaps = 73/616 (11%)

Query: 3   HLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGV 62
           +LE+L + +N     I    LG+ +++  LD+S N    G   R++++   LK +N+   
Sbjct: 201 NLEFLDVSSNNFSTGIPF--LGDCSALQHLDISGN-KLSGDFSRAISTCTELKLLNISSN 257

Query: 63  HLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQL-GQFKNLDNLDLANNSIVGPI 121
                I           S  L+ L L  +  +G + D L G    L  LDL+ N   G +
Sbjct: 258 QFVGPIPP-----LPLKS--LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAV 310

Query: 122 PQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQLV 181
           P   G  S L  L + +N  +G L       +  L    +  N+ +       +P     
Sbjct: 311 PPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFS-----GELPES--- 362

Query: 182 ALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAF-QLKFLDLGLNQFH 240
                N                L  L+L ++  S        ++    L+ L L  N F 
Sbjct: 363 ---LTNL------------SASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT 407

Query: 241 GQI-TDLTKVTQLLFLSVHSNNMSGPLPL---ISSNLVYLDLSNNSFSGSVSHYLCYRIN 296
           G+I   L+  ++L+ L +  N +SG +P      S L  L L  N   G +   L     
Sbjct: 408 GKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELM---- 463

Query: 297 EPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGK 356
             K+L  L L  N L GEIP    +  NL  + LSNN+ TG++P  +G L +L  L L  
Sbjct: 464 YVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSN 523

Query: 357 NRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRL 416
           N  SG IP  L +C +L  LD+  N F G IP    ++        + +N   G     +
Sbjct: 524 NSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQS-----GKIAANFIAGKRYVYI 578

Query: 417 CDLAFLQILDLADN--NLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKA 474
            +    +    A N     G   + +N ++                 +            
Sbjct: 579 KNDGMKKECHGAGNLLEFQGIRSEQLNRLSTR-----------NPCNI-----------T 616

Query: 475 SVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESI 534
           S V  G      +    +   D+S N L+  IP E+ ++     LN  HN  +G IP+ +
Sbjct: 617 SRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEV 676

Query: 535 GAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLSNNKLTGKIPSSTQLQSFDASSFTG 594
           G +R L  +D S N+L G IPQ+MS L  L  ++LSNN L+G IP   Q ++F  + F  
Sbjct: 677 GDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLN 736

Query: 595 ND-LCGAPLPKNCAEN 609
           N  LCG PLP+    N
Sbjct: 737 NPGLCGYPLPRCDPSN 752

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  326 bits (839), Expect = e-101
 Identities = 154/613 (25%), Positives = 243/613 (39%), Gaps = 86/613 (14%)

Query: 3   HLEYLSLRNNKLQGTI-DSEALGNLTSISRLDLSLNTGPEGRIPRS-MASLCNLKSINLR 60
            L  L L  N L G +    +LG+ + +  L++S NT  +     S    L +L+ ++L 
Sbjct: 101 SLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL-DFPGKVSGGLKLNSLEVLDLS 159

Query: 61  GVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGP 120
              +S        +  GC    L+ L +  + ISG +   + +  NL+ LD+++N+    
Sbjct: 160 ANSISGANVVGWVLSDGCGE--LKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTG 215

Query: 121 IPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPF-- 178
           IP  LG  S L+ L I  NKL+G  S    S  T+L    +  N+         IPP   
Sbjct: 216 IP-FLGDCSALQHLDISGNKLSGDFSR-AISTCTELKLLNISSNQFVGP-----IPPLPL 268

Query: 179 -QLVALGFHNCYVGSRFPQWLHSQ-KHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGL 236
             L  L           P +L      L  L+L  +      P  F  S   L+ L L  
Sbjct: 269 KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP-PFFGSCSLLESLALSS 327

Query: 237 NQFHGQITD--LTKVTQLLFLSVHSNNMSGPLPL----ISSNLVYLDLSNNSFSGSVSHY 290
           N F G++    L K+  L  L +  N  SG LP     +S++L+ LDLS+N+FSG +   
Sbjct: 328 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN 387

Query: 291 LCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLI 350
           LC   N   +L  L L++N   G+IP    +   L  L LS N  +G +P+SLGSL+ L 
Sbjct: 388 LCQ--NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLR 445

Query: 351 WLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHG 410
            L L  N L G IP  L     LE+L +  N+  G IP+      + +  + L +N   G
Sbjct: 446 DLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS-NCTNLNWISLSNNRLTG 504

Query: 411 PLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVIL 470
            +P  +  L  L IL L++N+  G IP  + +   +            +L          
Sbjct: 505 EIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSL-----------IWL---------- 543

Query: 471 TEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRI 530
                                    D++ N    +IP  M       S   + N   G+ 
Sbjct: 544 -------------------------DLNTNLFNGTIPAAMFKQ----SGKIAANFIAGKR 574

Query: 531 PESIGAMRSLESIDFSVN--QLSGEIPQSMSNLMSLNHLNLSNNKLTGKIPSS----TQL 584
              I      +    + N  +  G   + ++ L + N  N+++    G    +      +
Sbjct: 575 YVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSM 634

Query: 585 QSFDASS--FTGN 595
              D S    +G 
Sbjct: 635 MFLDMSYNMLSGY 647

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  305 bits (783), Expect = 1e-93
 Identities = 149/558 (26%), Positives = 228/558 (40%), Gaps = 94/558 (16%)

Query: 53  NLKSINLRGVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDL 112
            + SI+L    L+   S + +         LESL L +S I+G ++       +L +LDL
Sbjct: 51  KVTSIDLSSKPLNVGFSAVSSSLLSLTG--LESLFLSNSHINGSVSG-FKCSASLTSLDL 107

Query: 113 ANNSIVGPIP--QSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEV 170
           + NS+ GP+    SLG  S L+ L + +N L+          L  L    +  N ++   
Sbjct: 108 SRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGA- 166

Query: 171 RHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLK 230
                                            L++L +  + +S    +    +   L+
Sbjct: 167 ----NVV----------------GWVLSDGCGELKHLAISGNKISGDVDVSRCVN---LE 203

Query: 231 FLDLGLNQFHGQITDLTKVTQLLFLSVHSNNMSGPLPLI---SSNLVYLDLSNNSFSGSV 287
           FLD+  N F   I  L   + L  L +  N +SG         + L  L++S+N F G +
Sbjct: 204 FLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPI 263

Query: 288 SHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSY-QNLEILELSNNKFTGKLPNSLGSL 346
                      KSL  L L +N   GEIPD        L  L+LS N F G +P   GS 
Sbjct: 264 PPLPL------KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSC 317

Query: 347 TSLIWLLLGKNRLSGTIPV-SLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRS 405
           + L  L L  N  SG +P+ +L     L+ LD+  NEF G +P       + ++ L L S
Sbjct: 318 SLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSS 377

Query: 406 NNFHGPLPTRLCD--LAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLP 463
           NNF GP+   LC      LQ L L +N   G IP  ++N + +                 
Sbjct: 378 NNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSEL----------------- 420

Query: 464 LDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSH 523
                                    L+L      S N L+ +IP  + +L   + L    
Sbjct: 421 -----------------------VSLHL------SFNYLSGTIPSSLGSLSKLRDLKLWL 451

Query: 524 NSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLSNNKLTGKIPSS-- 581
           N   G IP+ +  +++LE++    N L+GEIP  +SN  +LN ++LSNN+LTG+IP    
Sbjct: 452 NMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG 511

Query: 582 --TQLQSFDASS--FTGN 595
               L     S+  F+GN
Sbjct: 512 RLENLAILKLSNNSFSGN 529

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  223 bits (571), Expect = 1e-67
 Identities = 86/342 (25%), Positives = 131/342 (38%), Gaps = 58/342 (16%)

Query: 267 PLISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGE--IPDCWMSYQN 324
             +SS L   D  N ++ G     LC    +   +  L L   +L     IP    +   
Sbjct: 22  TTLSSWLPTTDCCNRTWLGV----LCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPY 77

Query: 325 LEILELSN-NKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEF 383
           L  L +   N   G +P ++  LT L +L +    +SG IP  L     L +LD   N  
Sbjct: 78  LNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNAL 137

Query: 384 VGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFL-QILDLADNNLFGTIPKCINN 442
            G +P         +V +    N   G +P      + L   + ++ N L G IP    N
Sbjct: 138 SGTLPPSIS-SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN 196

Query: 443 ITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNL 502
                                                         LNL    D+SRN L
Sbjct: 197 ----------------------------------------------LNLA-FVDLSRNML 209

Query: 503 TKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLM 562
                +   + K TQ ++ + NS    +   +G  ++L  +D   N++ G +PQ ++ L 
Sbjct: 210 EGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLK 268

Query: 563 SLNHLNLSNNKLTGKIPSSTQLQSFDASSFTGND-LCGAPLP 603
            L+ LN+S N L G+IP    LQ FD S++  N  LCG+PLP
Sbjct: 269 FLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP 310

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  154 bits (392), Expect = 3e-42
 Identities = 71/251 (28%), Positives = 119/251 (47%), Gaps = 14/251 (5%)

Query: 195 PQWLHSQKHLQYLNLLNSGMSDLFPI-RFLKSAFQLKFLDL-GLNQFHGQI-TDLTKVTQ 251
                    +  L+L    +   +PI   L +   L FL + G+N   G I   + K+TQ
Sbjct: 43  CDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQ 102

Query: 252 LLFLSVHSNNMSGPLPL-IS--SNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKD 308
           L +L +   N+SG +P  +S    LV LD S N+ SG++   +        +L+G+    
Sbjct: 103 LHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS----SLPNLVGITFDG 158

Query: 309 NSLQGEIPDCWMSYQNL-EILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSL 367
           N + G IPD + S+  L   + +S N+ TGK+P +  +L +L ++ L +N L G   V  
Sbjct: 159 NRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLF 217

Query: 368 KNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDL 427
            +    + + + +N    ++          +  L LR+N  +G LP  L  L FL  L++
Sbjct: 218 GSDKNTQKIHLAKNSLAFDLGKV--GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNV 275

Query: 428 ADNNLFGTIPK 438
           + NNL G IP+
Sbjct: 276 SFNNLCGEIPQ 286

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  151 bits (385), Expect = 2e-41
 Identities = 78/346 (22%), Positives = 124/346 (35%), Gaps = 80/346 (23%)

Query: 84  ESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVG--PIPQSLGHLSNLRVLQIYN-NK 140
            + D  + +  G L D   Q   ++NLDL+  ++    PIP SL +L  L  L I   N 
Sbjct: 29  PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINN 88

Query: 141 LNGTL-SEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLH 199
           L G +   I  + LT+L +  +    ++                       G+  P +L 
Sbjct: 89  LVGPIPPAI--AKLTQLHYLYITHTNVS-----------------------GA-IPDFLS 122

Query: 200 SQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQI-TDLTKVTQLLFLSVH 258
             K L  L+                            N   G +   ++ +  L+ ++  
Sbjct: 123 QIKTLVTLDFSY-------------------------NALSGTLPPSISSLPNLVGITFD 157

Query: 259 SNNMSGPLPL----ISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKD-----N 309
            N +SG +P      S     + +S N  +G +          P +   L L       N
Sbjct: 158 GNRISGAIPDSYGSFSKLFTSMTISRNRLTGKI----------PPTFANLNLAFVDLSRN 207

Query: 310 SLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKN 369
            L+G+    + S +N + + L+ N     L   +G   +L  L L  NR+ GT+P  L  
Sbjct: 208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQ 266

Query: 370 CTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFH--GPLP 413
              L SL+V  N   G IP   G    R  V    +N      PLP
Sbjct: 267 LKFLHSLNVSFNNLCGEIP--QGGNLQRFDVSAYANNKCLCGSPLP 310

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  125 bits (316), Expect = 6e-32
 Identities = 75/374 (20%), Positives = 119/374 (31%), Gaps = 116/374 (31%)

Query: 3   HLEYLSLRNNKLQGTID-SEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRG 61
            +  L L    L        +L NL  ++ L +       G IP ++A L  L       
Sbjct: 51  RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQL------- 103

Query: 62  VHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPI 121
                                   L +  +++SG + D L Q K L  LD + N++ G +
Sbjct: 104 ----------------------HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTL 141

Query: 122 PQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWF-RVGGNKLTLEVRHDWIPPFQL 180
           P S+  L NL  +    N+++G + +  + + +KL     +  N+LT +     IPP   
Sbjct: 142 PPSISSLPNLVGITFDGNRISGAIPD-SYGSFSKLFTSMTISRNRLTGK-----IPPT-- 193

Query: 181 VALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFH 240
                                     LNL                     F+DL  N   
Sbjct: 194 -----------------------FANLNL--------------------AFVDLSRNMLE 210

Query: 241 GQI-TDLTKVTQLLFLSVHSNNMSGPLPLIS--SNLVYLDLSNNSFSGSVSHYLCYRINE 297
           G              + +  N+++  L  +    NL  LDL NN   G++          
Sbjct: 211 GDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTL---------- 260

Query: 298 PKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKN 357
           P+ L  LK                   L  L +S N   G++P   G+L          N
Sbjct: 261 PQGLTQLK------------------FLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANN 301

Query: 358 RLSGTIPVSLKNCT 371
           +     P  L  CT
Sbjct: 302 KCLCGSP--LPACT 313

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  121 bits (307), Expect = 1e-30
 Identities = 57/227 (25%), Positives = 93/227 (40%), Gaps = 55/227 (24%)

Query: 363 IPVSLKNCTALES----LDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHG--PLPTRL 416
           I   L N T L S     D     ++G +      +  R+  L L   N     P+P+ L
Sbjct: 14  IKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDT-QTYRVNNLDLSGLNLPKPYPIPSSL 72

Query: 417 CDLAFLQILDLAD-NNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKAS 475
            +L +L  L +   NNL G IP  I  +T +                             
Sbjct: 73  ANLPYLNFLYIGGINNLVGPIPPAIAKLTQL----------------------------- 103

Query: 476 VVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIG 535
                        L +      +  N++ +IP  ++ +K   +L+FS+N+ +G +P SI 
Sbjct: 104 -----------HYLYI------THTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146

Query: 536 AMRSLESIDFSVNQLSGEIPQSMSNLMSL-NHLNLSNNKLTGKIPSS 581
           ++ +L  I F  N++SG IP S  +   L   + +S N+LTGKIP +
Sbjct: 147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT 193

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 65.6 bits (161), Expect = 9e-12
 Identities = 34/139 (24%), Positives = 59/139 (42%), Gaps = 33/139 (23%)

Query: 2   IHLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRG 61
           ++L ++ L  N L+G   S   G+  +  ++ L+ N                        
Sbjct: 197 LNLAFVDLSRNMLEGDA-SVLFGSDKNTQKIHLAKN------------------------ 231

Query: 62  VHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPI 121
             L+ ++ ++    +      L  LDLR++ I G L   L Q K L +L+++ N++ G I
Sbjct: 232 -SLAFDLGKVGLSKN------LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI 284

Query: 122 PQSLGHLSNLRVLQIYNNK 140
           PQ  G+L    V    NNK
Sbjct: 285 PQG-GNLQRFDVSAYANNK 302

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  219 bits (559), Expect = 3e-62
 Identities = 125/621 (20%), Positives = 220/621 (35%), Gaps = 85/621 (13%)

Query: 3   HLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGV 62
           ++  L+L +N+L+  + +      + ++ LD+  N       P     L  LK +NL+  
Sbjct: 26  NITVLNLTHNQLRR-LPAANFTRYSQLTSLDVGFN-TISKLEPELCQKLPMLKVLNLQHN 83

Query: 63  HLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIP 122
            LSQ        F+ C +  L  L L S+SI     +   + KNL  LDL++N +     
Sbjct: 84  ELSQLSD---KTFAFCTN--LTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKL 138

Query: 123 QSLGHLSNLRVLQIYNNKLNGTLSE-IHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQLV 181
            +   L NL+ L + NNK+    SE +     + L    +  N++       +    +L 
Sbjct: 139 GTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLF 198

Query: 182 ALGFHNCYVGSRFPQWL---HSQKHLQYLNLLNSGMSDLFPIRFLKSAF-QLKFLDLGLN 237
            L  +N  +G    + L    +   ++ L+L NS +S      FL   +  L  LDL  N
Sbjct: 199 GLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYN 258

Query: 238 QFHGQITD-LTKVTQLLFLSVHSNNMSGPLPLI---SSNLVYLDLSNNSFSGSVSHYLCY 293
             +    D    + QL +  +  NN+            N+ YL+L  +    S+S     
Sbjct: 259 NLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLP 318

Query: 294 RINEP-----KSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLG---- 344
           +I++      K L  L ++DN + G   + +    NL+ L LSN+  + +   +      
Sbjct: 319 KIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSL 378

Query: 345 SLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILR 404
           + + L  L L KN++S     +      LE LD+G NE    +          +  + L 
Sbjct: 379 AHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLS 438

Query: 405 SNNFHGPLPTRLCDLAFLQILDLADNNL--FGTIPKCINNITGMVAANSFTRSSQQYLPL 462
            N +          +  LQ L L    L    + P     +  +                
Sbjct: 439 YNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNL---------------- 482

Query: 463 PLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFS 522
                                    IL+L      S NN+       +  L+  + L+  
Sbjct: 483 ------------------------TILDL------SNNNIANINDDMLEGLEKLEILDLQ 512

Query: 523 HNSFT--------GRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLSNNKL 574
           HN+          G     +  +  L  ++   N       +   +L  L  ++L  N L
Sbjct: 513 HNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNL 572

Query: 575 TGKIPSS----TQLQSFDASS 591
                S       L+S +   
Sbjct: 573 NTLPASVFNNQVSLKSLNLQK 593

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  213 bits (545), Expect = 2e-60
 Identities = 108/609 (17%), Positives = 206/609 (33%), Gaps = 72/609 (11%)

Query: 3   HLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGV 62
            L+ L+L++N+L   +  +     T+++ L L  N+  +           NL +++L   
Sbjct: 74  MLKVLNLQHNELSQ-LSDKTFAFCTNLTELHLMSNSI-QKIKNNPFVKQKNLITLDLSHN 131

Query: 63  HLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKN--LDNLDLANNSIVGP 120
            LS   S  L       +  L+ L L ++ I    +++L  F N  L  L+L++N I   
Sbjct: 132 GLS---STKLGTQVQLEN--LQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEF 186

Query: 121 IPQSLGHLSNLRVLQIYNNKLNGTLSEIHFS--NLTKLSWFRVGGNKLTLEVRHDWI--- 175
            P     +  L  L + N +L  +L+E        T +    +  ++L+    +      
Sbjct: 187 SPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLS-TTSNTTFLGL 245

Query: 176 PPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLG 235
               L  L      +             L+Y  L  + +  LF    L   F +++L+L 
Sbjct: 246 KWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFS-HSLHGLFNVRYLNLK 304

Query: 236 LNQFHGQITD----------LTKVTQLLFLSVHSNNMSGPLPLIS---SNLVYLDLSNNS 282
            +     I+              +  L  L++  N++ G    +     NL YL LSN+ 
Sbjct: 305 RSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSF 364

Query: 283 FSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLP-N 341
            S        +       L  L L  N +     D +    +LE+L+L  N+   +L   
Sbjct: 365 TSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQ 424

Query: 342 SLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEF--VGNIPTWTGERFSRMV 399
               L ++  + L  N+       S     +L+ L +       V + P+        + 
Sbjct: 425 EWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQ-PLRNLT 483

Query: 400 VLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQY 459
           +L L +NN        L  L  L+ILDL  NNL                           
Sbjct: 484 ILDLSNNNIANINDDMLEGLEKLEILDLQHNNL--------------------------- 516

Query: 460 LPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSL 519
                             + G  I + + L+ +   ++  N   +       +L   + +
Sbjct: 517 -----------ARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKII 565

Query: 520 NFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLM-SLNHLNLSNNKLTGKI 578
           +   N+             SL+S++   N ++    +       +L  L++  N      
Sbjct: 566 DLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTC 625

Query: 579 PSSTQLQSF 587
            S     ++
Sbjct: 626 ESIAWFVNW 634

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  209 bits (534), Expect = 6e-59
 Identities = 121/625 (19%), Positives = 210/625 (33%), Gaps = 94/625 (15%)

Query: 3   HLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLN--TGPEGRIPRSMASLCNLKSINLR 60
            L  L +  N +   ++ E    L  +  L+L  N  +       ++ A   NL  ++L 
Sbjct: 50  QLTSLDVGFNTISK-LEPELCQKLPMLKVLNLQHNELSQL---SDKTFAFCTNLTELHLM 105

Query: 61  GVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGP 120
              + +  +   N F    +  L +LDL  + +S        Q +NL  L L+NN I   
Sbjct: 106 SNSIQKIKN---NPFVKQKN--LITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQAL 160

Query: 121 IPQSLG--HLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPF 178
             + L     S+L+ L++ +N++        F  + +L    +   +L   +        
Sbjct: 161 KSEELDIFANSSLKKLELSSNQIKEFSPGC-FHAIGRLFGLFLNNVQLGPSLTEKLCLEL 219

Query: 179 QLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAF-QLKFLDLGLN 237
                                    ++ L+L NS +S      FL   +  L  LDL  N
Sbjct: 220 AN---------------------TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYN 258

Query: 238 QFHGQITD-LTKVTQLLFLSVHSNNMSGPLPLI---SSNLVYLDLSNNSFSGSVSHYLCY 293
             +    D    + QL +  +  NN+            N+ YL+L  +    S+S     
Sbjct: 259 NLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLP 318

Query: 294 RINEP-----KSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLG---- 344
           +I++      K L  L ++DN + G   + +    NL+ L LSN+  + +   +      
Sbjct: 319 KIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSL 378

Query: 345 SLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILR 404
           + + L  L L KN++S     +      LE LD+G NE    +          +  + L 
Sbjct: 379 AHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLS 438

Query: 405 SNNFHGPLPTRLCDLAFLQILDLADNNL--FGTIPKCINNITG----MVAANSFTRSSQQ 458
            N +          +  LQ L L    L    + P     +       ++ N+    +  
Sbjct: 439 YNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDD 498

Query: 459 YLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTK--------SIPLEM 510
            L                          E L  ++  D+  NNL +             +
Sbjct: 499 ML--------------------------EGLEKLEILDLQHNNLARLWKHANPGGPIYFL 532

Query: 511 TNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLS 570
             L     LN   N F     E    +  L+ ID  +N L+       +N +SL  LNL 
Sbjct: 533 KGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQ 592

Query: 571 NNKLTGKIPSS-----TQLQSFDAS 590
            N +T             L   D  
Sbjct: 593 KNLITSVEKKVFGPAFRNLTELDMR 617

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  189 bits (481), Expect = 1e-51
 Identities = 95/535 (17%), Positives = 177/535 (33%), Gaps = 47/535 (8%)

Query: 80  SIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNN 139
           ++  E  D     ++  + D L    N+  L+L +N +      +    S L  L +  N
Sbjct: 3   TVSHEVADCSHLKLT-QVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFN 59

Query: 140 KLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLH 199
            ++  L       L  L    +  N+L+      +     L  L   +  +         
Sbjct: 60  TISK-LEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFV 118

Query: 200 SQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQITDLTKV---TQLLFLS 256
            QK+L  L+L ++G+S       ++    L+ L L  N+     ++   +   + L  L 
Sbjct: 119 KQKNLITLDLSHNGLSSTKLGTQVQLE-NLQELLLSNNKIQALKSEELDIFANSSLKKLE 177

Query: 257 VHSNNMSGPLPLI---SSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQG 313
           + SN +    P        L  L L+N     S++  LC  +    S+  L L ++ L  
Sbjct: 178 LSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELA-NTSIRNLSLSNSQLST 236

Query: 314 EIPD--CWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCT 371
                   + + NL +L+LS N       +S   L  L +  L  N +      SL    
Sbjct: 237 TSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLF 296

Query: 372 ALESLDVGENEFVG--------NIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQ 423
            +  L++  +             I  ++ +    +  L +  N+  G        L  L+
Sbjct: 297 NVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLK 356

Query: 424 ILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAI 483
            L L  N+              +        S      L L  + I   ++   S    +
Sbjct: 357 YLSL-SNSFTSLRTLTNETFVSL------AHSPLHI--LNLTKNKISKIESDAFSWLGHL 407

Query: 484 EYDEILNLVKETDVSRNNLTKSIPLEM-TNLKATQSLNFSHNSFTGRIPESIGAMRSLES 542
           E    L+L        N + + +  +    L+    +  S+N +      S   + SL+ 
Sbjct: 408 EV---LDL------GLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQR 458

Query: 543 IDFSVNQLSG--EIPQSMSNLMSLNHLNLSNNKLTGKIPSS----TQLQSFDASS 591
           +      L      P     L +L  L+LSNN +            +L+  D   
Sbjct: 459 LMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQH 513

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  155 bits (395), Expect = 4e-40
 Identities = 84/450 (18%), Positives = 148/450 (32%), Gaps = 50/450 (11%)

Query: 3   HLEYLSLRNNKLQGTIDSEALGNL--TSISRLDLSLNTGPEGRIPRSMASLCNLKSINLR 60
            +  LSL N++L     +     L  T+++ LDLS N         S A L  L+   L 
Sbjct: 223 SIRNLSLSNSQLST-TSNTTFLGLKWTNLTMLDLSYN-NLNVVGNDSFAWLPQLEYFFLE 280

Query: 61  GVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGP 120
             ++    S   +   G  +  +  L+L+                +     ++  S+   
Sbjct: 281 YNNIQHLFS---HSLHGLFN--VRYLNLKR---------------SFTKQSISLASLPKI 320

Query: 121 IPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWI----P 176
              S   L  L  L + +N + G +    F+ L  L +  +  +  +L    +       
Sbjct: 321 DDFSFQWLKCLEHLNMEDNDIPG-IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLA 379

Query: 177 PFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGL 236
              L  L      +            HL+ L+L  + +      +  +    +  + L  
Sbjct: 380 HSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSY 439

Query: 237 NQFHGQITD-LTKVTQLLFLSVHSNNMSGPLPLIS-----SNLVYLDLSNNSFSGSVSHY 290
           N++     +    V  L  L +    +       S      NL  LDLSNN+ +      
Sbjct: 440 NKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDM 499

Query: 291 LCYRINEPKSLIGLKLKDNSLQ--------GEIPDCWMSYQNLEILELSNNKFTGKLPNS 342
           L       + L  L L+ N+L         G          +L IL L +N F       
Sbjct: 500 LE----GLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEV 555

Query: 343 LGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLI 402
              L  L  + LG N L+        N  +L+SL++ +N          G  F  +  L 
Sbjct: 556 FKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELD 615

Query: 403 LRSNNFHGPLPTRLCDLAFLQILDLADNNL 432
           +R N F     +      F+  ++    N+
Sbjct: 616 MRFNPFDCTCESI---AWFVNWINETHTNI 642

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  102 bits (255), Expect = 1e-22
 Identities = 60/323 (18%), Positives = 118/323 (36%), Gaps = 25/323 (7%)

Query: 1   FIHLEYLSLRNNKLQ-GTIDSEALGNL--TSISRLDLSLNTGPEGRIPRSMASLCNLKSI 57
            I+L+YLSL N+     T+ +E   +L  + +  L+L+ N         + + L +L+ +
Sbjct: 352 LINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKN-KISKIESDAFSWLGHLEVL 410

Query: 58  NLRGVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSI 117
           +L    + QE++     + G  +  +  + L  +       +      +L  L L   ++
Sbjct: 411 DLGLNEIGQELTG--QEWRGLEN--IFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVAL 466

Query: 118 --VGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLT-LEVRHDW 174
             V   P     L NL +L + NN +   +++     L KL    +  N L  L    + 
Sbjct: 467 KNVDSSPSPFQPLRNLTILDLSNNNIAN-INDDMLEGLEKLEILDLQHNNLARLWKHANP 525

Query: 175 IPPF-------QLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAF 227
             P         L  L   +        +       L+ ++L  + ++ L       +  
Sbjct: 526 GGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPA-SVFNNQV 584

Query: 228 QLKFLDLGLNQFHGQITDL--TKVTQLLFLSVHSNNMSGPLPLISSNLVYLDLSNNSFSG 285
            LK L+L  N        +       L  L +  N        I+  + +++ ++ +   
Sbjct: 585 SLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPE 644

Query: 286 SVSHYLCYRINEPKSLIGLKLKD 308
             SHYLC   N P    G  ++ 
Sbjct: 645 LSSHYLC---NTPPHYHGFPVRL 664

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  217 bits (555), Expect = 4e-62
 Identities = 85/616 (13%), Positives = 178/616 (28%), Gaps = 97/616 (15%)

Query: 3   HLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGV 62
            +  LSL      G +  +A+G LT +  L L  +             +    S   +  
Sbjct: 82  RVTGLSLEGFGASGRV-PDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQK 140

Query: 63  HLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIP 122
                    ++        +L    + S      +            +   +N+I   + 
Sbjct: 141 MRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VS 199

Query: 123 QSLGHLSNLRVLQIYNNKLNGT-----LSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPP 177
           +++  L+ LR   + N+              +     +     +  + L           
Sbjct: 200 KAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLK---------- 249

Query: 178 FQLVALGFHNCYVGSRFPQWLHSQKHLQYLNL-------LNSGMSDLFPIRFLKSAFQLK 230
             L  +  +NC   ++ P +L +   +Q +N+             D   +       +++
Sbjct: 250 -DLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQ 308

Query: 231 FLDLGLNQF-HGQI-TDLTKVTQLLFLSVHSNNMSGPLPLIS--SNLVYLDLSNNSFSGS 286
            + +G N      + T L K+ +L  L    N + G LP       L  L+L+ N  +  
Sbjct: 309 IIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEI 368

Query: 287 VSHYLCYRINEPKSLIGLKLKDNSLQGEIPD--CWMSYQNLEILELSNNKFTG------- 337
            +++        + +  L    N L+  IP+     S   +  ++ S N+          
Sbjct: 369 PANFC----GFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFD 423

Query: 338 KLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERF-- 395
            L  +     ++  + L  N++S          + L S+++  N     IP  + +    
Sbjct: 424 PLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTE-IPKNSLKDENE 482

Query: 396 -----SRMVVLILRSNNFHG-PLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAA 449
                  +  + LR N         R   L +L  +DL+ N+     P    N + +   
Sbjct: 483 NFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSF-SKFPTQPLNSSTL--- 538

Query: 450 NSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLE 509
                                                +   +  + D   N   +  P  
Sbjct: 539 -------------------------------------KGFGIRNQRDAQGNRTLREWPEG 561

Query: 510 MTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNL 569
           +T   +   L    N     + E I    ++  +D   N         +   +      L
Sbjct: 562 ITLCPSLTQLQIGSNDIRK-VNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYML 618

Query: 570 SNNKLTGKIPSSTQLQ 585
             +K    I     L 
Sbjct: 619 FYDKTQ-DIRGCDALD 633

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  190 bits (485), Expect = 2e-52
 Identities = 87/608 (14%), Positives = 165/608 (27%), Gaps = 106/608 (17%)

Query: 23  LGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLS-QEISEILNIFSGCVSI 81
           L +   ++ L L    G  GR+P ++  L  L+ + L        E        S  +S 
Sbjct: 77  LNSNGRVTGLSLE-GFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMS- 134

Query: 82  ELESLDLRSSSISGHLTDQLG--QFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNN 139
             E              D      F +L    + ++     I +S         +   +N
Sbjct: 135 -DEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSN 193

Query: 140 KLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLH 199
            +      +    LTKL  F +G +    E                              
Sbjct: 194 NITFVSKAV--MRLTKLRQFYMGNSPFVAE-----NICEAWENENSEYAQQYKTEDLKWD 246

Query: 200 SQKHLQYLNLLNSGMSDLFP--IRFLKSAFQLKFLDLGLNQFHGQITDLTKVTQLLFLSV 257
           + K L  + + N       P  ++ L     ++ +++  N+             L     
Sbjct: 247 NLKDLTDVEVYNCPNLTKLPTFLKALPE---MQLINVACNRGISGEQLKDDWQALADAP- 302

Query: 258 HSNNMSGPLPLISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPD 317
                      +   +  + +  N+                 SL  +K            
Sbjct: 303 -----------VGEKIQIIYIGYNNLKT---------FPVETSLQKMK------------ 330

Query: 318 CWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLD 377
                  L +LE   N+  G    + GS   L  L L  N+++            +E+L 
Sbjct: 331 ------KLGMLECLYNQLEG-KLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLS 383

Query: 378 VGENEFVGNIPTWTGERFSRMVVLILRSNNFHG-------PLPTRLCDLAFLQILDLADN 430
              N+       +  +  S M  +    N           PL         +  ++L++N
Sbjct: 384 FAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN 443

Query: 431 NLFGTIPKCINNITGM----VAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYD 486
            +     +  +  + +    +  N  T                      +       E +
Sbjct: 444 QISKFPKELFSTGSPLSSINLMGNMLT---------------------EIPKNSLKDENE 482

Query: 487 EILNLVK--ETDVSRNNLTKSIP-LEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESI 543
              N       D+  N LTK       T L     ++ S+NSF+   P       +L+  
Sbjct: 483 NFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGF 541

Query: 544 ------DFSVNQLSGEIPQSMSNLMSLNHLNLSNNKLTGKIPSS--TQLQSFDASSFTGN 595
                 D   N+   E P+ ++   SL  L + +N +   +       +   D      N
Sbjct: 542 GIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKITPNISVLDIK---DN 597

Query: 596 DLCGAPLP 603
                 L 
Sbjct: 598 PNISIDLS 605

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  164 bits (417), Expect = 3e-43
 Identities = 64/527 (12%), Positives = 149/527 (28%), Gaps = 115/527 (21%)

Query: 100 QLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWF 159
            L     +  L L      G +P ++G L+ L VL + ++             ++     
Sbjct: 76  SLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGIS----- 130

Query: 160 RVGGNKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFP 219
                                ++              ++       + +L+   ++    
Sbjct: 131 -------------------ANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQ 171

Query: 220 IRFLKSAFQLKFLDLGLNQFHGQIT----DLTKVTQLLFLSVHSNNMSGPLPLISSNLVY 275
            + +K + ++   D  + Q    IT     + ++T+L    + ++         +     
Sbjct: 172 QKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENEN 231

Query: 276 LDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKF 335
            + +    +  +        +  K L  +++ +     ++P    +   ++++ ++ N+ 
Sbjct: 232 SEYAQQYKTEDLK------WDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRG 285

Query: 336 T--------GKLPNSLGSLTSLIWLLLGKNRL-SGTIPVSLKNCTALESLDVGENEFVGN 386
                     +          +  + +G N L +  +  SL+    L  L+   N+  G 
Sbjct: 286 ISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGK 345

Query: 387 IPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPK--CINNIT 444
           +P +      ++  L L  N               ++ L  A N L   IP      +++
Sbjct: 346 LPAFGS--EIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKL-KYIPNIFDAKSVS 402

Query: 445 GMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTK 504
            M                                          ++       S N +  
Sbjct: 403 VM----------------------------------------SAIDF------SYNEIGS 416

Query: 505 -------SIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSG----- 552
                   +           S+N S+N  +    E       L SI+   N L+      
Sbjct: 417 VDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNS 476

Query: 553 --EIPQSMSNLMSLNHLNLSNNKLTGKIPSS------TQLQSFDASS 591
             +  ++  N   L  ++L  NKLT  +           L   D S 
Sbjct: 477 LKDENENFKNTYLLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSY 522

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  163 bits (414), Expect = 7e-43
 Identities = 64/574 (11%), Positives = 155/574 (27%), Gaps = 130/574 (22%)

Query: 1   FIHLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLR 60
           F  L    + ++  Q +I  ++       +++    N      + +++  L  L+   + 
Sbjct: 158 FSDLIKDCINSDPQQKSI-KKSSRITLKDTQIGQLSNNI--TFVSKAVMRLTKLRQFYMG 214

Query: 61  GVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGP 120
                 E                E+ +   +        +    K+L ++++ N   +  
Sbjct: 215 NSPFVAENICEA----------WENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTK 264

Query: 121 IPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQL 180
           +P  L  L  ++++ +  N+           +   L+   VG                  
Sbjct: 265 LPTFLKALPEMQLINVACNRGISGEQLK--DDWQALADAPVG------------------ 304

Query: 181 VALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFH 240
                                + +Q + +  + +        L+   +L  L+   NQ  
Sbjct: 305 ---------------------EKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLE 343

Query: 241 GQITDLTKVTQLLFLSVHSNNMSGPLPLI---SSNLVYLDLSNNSFSGSVSHYLCYRINE 297
           G++       +L  L++  N ++         +  +  L  ++N      + +    +  
Sbjct: 344 GKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSV-- 401

Query: 298 PKSLIGLKLKDNSLQG-------EIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLI 350
              +  +    N +          +        N+  + LSNN+ +        + + L 
Sbjct: 402 -SVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLS 460

Query: 351 WLLLGKNRLSG-------TIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLIL 403
            + L  N L+            + KN   L S+D+  N+       +       +V + L
Sbjct: 461 SINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDL 520

Query: 404 RSNNFHGPLPTRLCDLAFLQIL------DLADNNLFGTIPKCINNITGMVAANSFTRSSQ 457
             N+F    PT+  + + L+        D   N      P+ I     +           
Sbjct: 521 SYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSL----------- 568

Query: 458 QYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQ 517
                                          L +        N++ K       N+    
Sbjct: 569 -----------------------------TQLQI------GSNDIRKVNEKITPNI---S 590

Query: 518 SLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLS 551
            L+   N         +             ++  
Sbjct: 591 VLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  143 bits (363), Expect = 3e-36
 Identities = 66/492 (13%), Positives = 139/492 (28%), Gaps = 105/492 (21%)

Query: 109 NLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTL 168
           N +   +        SL     +  L +     +G + +     LT+L    +G +   +
Sbjct: 61  NFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPD-AIGQLTELEVLALGSHGEKV 119

Query: 169 EVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQ 228
             R                       P+ + +    +    +       F         +
Sbjct: 120 NER--------------------LFGPKGISANMSDEQKQKMRMHYQKTFV----DYDPR 155

Query: 229 LKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNNMSGPLP---LISSNLVYLDLSNNSFSG 285
             F DL  +  +                  S+     +     I+     +   +N+ + 
Sbjct: 156 EDFSDLIKDCIN------------------SDPQQKSIKKSSRITLKDTQIGQLSNNITF 197

Query: 286 SVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGS 345
                +   +     L    + ++    E        +  E       +          +
Sbjct: 198 -----VSKAVMRLTKLRQFYMGNSPFVAENIC-----EAWENENSEYAQQYKTEDLKWDN 247

Query: 346 LTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFV--------GNIPTWTGERFSR 397
           L  L  + +        +P  LK    ++ ++V  N  +                    +
Sbjct: 248 LKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAP-VGEK 306

Query: 398 MVVLILRSNNF-HGPLPTRLCDLAFLQILDLADNNLFGTIP---KCINNITGMVAANSFT 453
           + ++ +  NN    P+ T L  +  L +L+   N L G +P     I   +  +A N  T
Sbjct: 307 IQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQIT 366

Query: 454 RSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIP--LEMT 511
                 +P    G                         V+    + N L   IP   +  
Sbjct: 367 E-----IPANFCGF---------------------TEQVENLSFAHNKLK-YIPNIFDAK 399

Query: 512 NLKATQSLNFSHNSFTG-------RIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSL 564
           ++    +++FS+N            +  +     ++ SI+ S NQ+S    +  S    L
Sbjct: 400 SVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPL 459

Query: 565 NHLNLSNNKLTG 576
           + +NL  N LT 
Sbjct: 460 SSINLMGNMLTE 471

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 72.0 bits (177), Expect = 3e-13
 Identities = 25/217 (11%), Positives = 64/217 (29%), Gaps = 32/217 (14%)

Query: 406 NNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMV----AANSFTRSSQQYLP 461
           + +       L     +  L L      G +P  I  +T +      ++    + + + P
Sbjct: 67  DMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGP 126

Query: 462 LPLDGDVILTEKASVVS--EGEAIEYDEILNLVKET--DVSRNNLTKSIPLEMTNLKATQ 517
             +  ++   +K  +    +   ++YD   +        ++ +   KSI           
Sbjct: 127 KGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDT 186

Query: 518 SLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEI-------------------PQSM 558
            +    N+ T  + +++  +  L       +    E                        
Sbjct: 187 QIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKW 245

Query: 559 SNLMSLNHLNLSNNKLTGKIPSS----TQLQSFDASS 591
            NL  L  + + N     K+P+      ++Q  + + 
Sbjct: 246 DNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVAC 282

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 47.3 bits (113), Expect = 1e-05
 Identities = 12/99 (12%), Positives = 30/99 (30%), Gaps = 5/99 (5%)

Query: 518 SLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLSNNKLTGK 577
           + N   + +  +   S+ +   +  +       SG +P ++  L  L  L L ++     
Sbjct: 61  NFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVN 120

Query: 578 IPSS-----TQLQSFDASSFTGNDLCGAPLPKNCAENVS 611
                    +   S +             +  +  E+ S
Sbjct: 121 ERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFS 159

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  212 bits (541), Expect = 2e-60
 Identities = 112/599 (18%), Positives = 201/599 (33%), Gaps = 85/599 (14%)

Query: 3   HLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGV 62
             + L L  N L+  + S +  +   +  LDLS     +     +  SL +L ++ L G 
Sbjct: 29  STKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGN 86

Query: 63  HLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVG-PI 121
            +          FSG  S  L+ L    ++++      +G  K L  L++A+N I    +
Sbjct: 87  PIQSLALG---AFSGLSS--LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKL 141

Query: 122 PQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRV----GGNKLTLEVRHDWIPP 177
           P+   +L+NL  L + +NK+   +       L ++    +      N +   ++      
Sbjct: 142 PEYFSNLTNLEHLDLSSNKIQS-IYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKE 199

Query: 178 FQLVALGFHNCYV-GSRFPQWLHSQKHLQYLNL-----LNSGMSDLFPIRFLKSAFQLKF 231
            +L  L   N +   +     +     L+   L      N G  + F    L+    L  
Sbjct: 200 IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTI 259

Query: 232 LDLGLNQFHGQITDLTKV----TQLLFLSVHSNNMSGPLPLI-SSNLVYLDLSNNSFSGS 286
            +  L      + D+  +    T +   S+ S  +        +    +L+L N  F   
Sbjct: 260 EEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQF 319

Query: 287 VSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNK--FTGKLPNSLG 344
            +  L             +L   S +G      +   +LE L+LS N   F G    S  
Sbjct: 320 PTLKL---------KSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDF 370

Query: 345 SLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILR 404
             TSL +L L  N +  T+  +      LE LD   +                ++ L + 
Sbjct: 371 GTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS 429

Query: 405 SNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQ-QYLPLP 463
             +           L+ L++L +A N+                  + FT      +L   
Sbjct: 430 HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL-----------PDIFTELRNLTFL--- 475

Query: 464 LDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSH 523
                                           D+S+  L +  P    +L + Q LN SH
Sbjct: 476 --------------------------------DLSQCQLEQLSPTAFNSLSSLQVLNMSH 503

Query: 524 NSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLM-SLNHLNLSNNKLTGKIPSS 581
           N+F          + SL+ +D+S+N +     Q + +   SL  LNL+ N         
Sbjct: 504 NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQ 562

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  187 bits (478), Expect = 1e-51
 Identities = 102/585 (17%), Positives = 186/585 (31%), Gaps = 78/585 (13%)

Query: 3   HLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGV 62
           HL  L L  N +Q  +   A   L+S+ +L               +  L  LK +N+   
Sbjct: 77  HLSTLILTGNPIQS-LALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHN 134

Query: 63  HLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDN----LDLANNSIV 118
            +     ++   FS   +  LE LDL S+ I       L     +      LDL+ N + 
Sbjct: 135 LIQS--FKLPEYFSNLTN--LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN 190

Query: 119 GPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPF 178
              P +   +  L  L + NN  +  + +     L  L   R+   +   E   +     
Sbjct: 191 FIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKS 249

Query: 179 QLVALGF---------HNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQL 229
            L  L           +  Y         +   ++   +L++  +  +    +      L
Sbjct: 250 ALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHL 309

Query: 230 KFLDLGLNQFHGQITDLTKVTQLLFLSVHSNNMSGPLPLISSNLVYLDLSNNSFSGSVSH 289
           + ++    QF      L  + +L F S    N    + L   +L +LDLS N  S     
Sbjct: 310 ELVNCKFGQFPTLK--LKSLKRLTFTSNKGGNAFSEVDL--PSLEFLDLSRNGLSFKGCC 365

Query: 290 YLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNS-LGSLTS 348
                     SL  L L  N +   +   ++  + LE L+  ++        S   SL +
Sbjct: 366 SQS--DFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 422

Query: 349 LIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNF 408
           LI+L +                ++LE L +  N F  N           +  L L     
Sbjct: 423 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 482

Query: 409 HGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDV 468
               PT    L+ LQ+L+++ NN F         +  +                      
Sbjct: 483 EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSL---------------------- 520

Query: 469 ILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKAT-QSLNFSHNSFT 527
                             ++L+       S N++  S   E+ +  ++   LN + N F 
Sbjct: 521 ------------------QVLDY------SLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 556

Query: 528 GRIPES--IGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLS 570
                   +  ++    +   V ++    P      M +  LN++
Sbjct: 557 CTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQG-MPVLSLNIT 600

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  175 bits (445), Expect = 4e-47
 Identities = 103/562 (18%), Positives = 166/562 (29%), Gaps = 86/562 (15%)

Query: 53  NLKSINLRGVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDL 112
           + K+++L    L    S     F      EL+ LDL    I            +L  L L
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFP-----ELQVLDLSRCEIQTIEDGAYQSLSHLSTLIL 83

Query: 113 ANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRH 172
             N I      +   LS+L+ L      L   L      +L  L    V  N +      
Sbjct: 84  TGNPIQSLALGAFSGLSSLQKLVAVETNLAS-LENFPIGHLKTLKELNVAHNLIQSFKLP 142

Query: 173 DWIPPF-QLVALGFHNCYVGSRFPQWLHSQKHLQY----LNLLNSGMSDLFPIRFLKSAF 227
           ++      L  L   +  + S +   L     +      L+L  + M+ + P  F     
Sbjct: 143 EYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF--KEI 200

Query: 228 QLKFLDLGLNQFHGQITDLT----KVTQLLFLSVHSNNMSGPLPLIS----SNLVYLDLS 279
           +L  L L  N     +           ++  L +      G L          L  L + 
Sbjct: 201 RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260

Query: 280 NNSFSGSVSHY--LCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTG 337
               +    +   +    N   ++    L   +++      +      + LEL N KF  
Sbjct: 261 EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF--GWQHLELVNCKFGQ 318

Query: 338 KLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGEN--EFVGNIPTWTGERF 395
                L SL  L +         G    S  +  +LE LD+  N   F G          
Sbjct: 319 FPTLKLKSLKRLTF-----TSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDF-GT 372

Query: 396 SRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRS 455
           + +  L L  N     + +    L  L+ LD   +NL                 + F   
Sbjct: 373 TSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEF-----------SVFLSL 420

Query: 456 SQ-QYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLK 514
               YL                                   D+S  +   +       L 
Sbjct: 421 RNLIYL-----------------------------------DISHTHTRVAFNGIFNGLS 445

Query: 515 ATQSLNFSHNSFTGRI-PESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLSNNK 573
           + + L  + NSF     P+    +R+L  +D S  QL    P + ++L SL  LN+S+N 
Sbjct: 446 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN 505

Query: 574 LTGKIPSS----TQLQSFDASS 591
                         LQ  D S 
Sbjct: 506 FFSLDTFPYKCLNSLQVLDYSL 527

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  119 bits (300), Expect = 2e-28
 Identities = 59/340 (17%), Positives = 99/340 (29%), Gaps = 36/340 (10%)

Query: 269 ISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEIL 328
           +  +   LDLS N      S+           L  L L    +Q      + S  +L  L
Sbjct: 26  LPFSTKNLDLSFNPLRHLGSYSFFSFPE----LQVLDLSRCEIQTIEDGAYQSLSHLSTL 81

Query: 329 ELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIP 388
            L+ N        +   L+SL  L+  +  L+      + +   L+ L+V  N       
Sbjct: 82  ILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKL 141

Query: 389 TWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQI----LDLADNNLFGTIPKCINNIT 444
                  + +  L L SN       T L  L  + +    LDL+ N +    P       
Sbjct: 142 PEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP------- 194

Query: 445 GMVAANSFTRSSQQYLPL---PLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNN 501
                 +F       L L       +V+        +  + +   E+  LV     +  N
Sbjct: 195 -----GAFKEIRLHKLTLRNNFDSLNVMK-------TCIQGLAGLEVHRLVLGEFRNEGN 242

Query: 502 LTKSIPLEMTNLKATQSLNFSHNS---FTGRIPESIGAMRSLESIDFSVNQLSGEIPQSM 558
           L K     +  L       F       +   I +    + ++ S       +        
Sbjct: 243 LEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDF-- 300

Query: 559 SNLMSLNHLNLSNNKLTGKIPSS-TQLQSFDASSFTGNDL 597
           S      HL L N K           L+    +S  G + 
Sbjct: 301 SYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNA 340

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  112 bits (283), Expect = 3e-26
 Identities = 63/418 (15%), Positives = 118/418 (28%), Gaps = 88/418 (21%)

Query: 2   IHLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRG 61
           + +E   L           +    LT++S   L   T                       
Sbjct: 257 LTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVT----------------------- 293

Query: 62  VHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPI 121
                 I  + + FS       + L+L +       T +L   K L              
Sbjct: 294 ------IERVKD-FSYNFG--WQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGG-----N 339

Query: 122 PQSLGHLSNLRVLQIYNNKLNGT-LSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQL 180
             S   L +L  L +  N L+            T L +  +  N +              
Sbjct: 340 AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI------------- 386

Query: 181 VALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFH 240
                                + L++L+  +S +  +       S   L +LD+      
Sbjct: 387 ------------TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 434

Query: 241 GQITDLTKVTQLLFLSVHSNNMSGPLPLISSNLVYLDLSNNSFSGSVSHYLCYRINEPKS 300
                       +F  + S             L  L ++ NSF  +    +     E ++
Sbjct: 435 VAFNG-------IFNGLSS-------------LEVLKMAGNSFQENFLPDI---FTELRN 471

Query: 301 LIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLS 360
           L  L L    L+   P  + S  +L++L +S+N F          L SL  L    N + 
Sbjct: 472 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 531

Query: 361 GTIPVSLKNC-TALESLDVGENEFVGNIP-TWTGERFSRMVVLILRSNNFHGPLPTRL 416
            +    L++  ++L  L++ +N+F          +       L++         P+  
Sbjct: 532 TSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDK 589

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  108 bits (271), Expect = 1e-24
 Identities = 57/351 (16%), Positives = 98/351 (27%), Gaps = 50/351 (14%)

Query: 1   FIHLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLR 60
             ++   SL +  ++   D            L+L                   LK  +L+
Sbjct: 281 LTNVSSFSLVSVTIERVKD---FSYNFGWQHLELVNC---------KFGQFPTLKLKSLK 328

Query: 61  GVHLSQEISEILNIFSGCVSIELESLDLRSSSIS--GHLTDQLGQFKNLDNLDLANNSIV 118
            +  +              S  LE LDL  + +S  G  +       +L  LDL+ N ++
Sbjct: 329 RLTFTSNKGGNAFSEVDLPS--LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI 386

Query: 119 GPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPF 178
             +  +   L  L  L   ++ L        F +L  L +  +                 
Sbjct: 387 T-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR----------- 434

Query: 179 QLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQ 238
                          F    +    L+ L +  +   + F          L FLDL   Q
Sbjct: 435 -------------VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 481

Query: 239 FHGQITD-LTKVTQLLFLSVHSNNMSGPLPLI---SSNLVYLDLSNNSFSGSVSHYLCYR 294
                      ++ L  L++  NN            ++L  LD S N    S    L   
Sbjct: 482 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ-- 539

Query: 295 INEPKSLIGLKLKDNSLQGEIPDCWMS--YQNLEILELSNNKFTGKLPNSL 343
            + P SL  L L  N               ++   L +   +     P+  
Sbjct: 540 -HFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDK 589

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 72.4 bits (178), Expect = 2e-13
 Identities = 21/123 (17%), Positives = 38/123 (30%), Gaps = 7/123 (5%)

Query: 486 DEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDF 545
           D +    K  D+S N L         +    Q L+ S          +  ++  L ++  
Sbjct: 24  DNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLIL 83

Query: 546 SVNQLSGEIPQSMSNLMSLNHLNLSNNKLTGKIPSS----TQLQSFDASSFTGNDLCGAP 601
           + N +      + S L SL  L      L             L+  + +    N +    
Sbjct: 84  TGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVA---HNLIQSFK 140

Query: 602 LPK 604
           LP+
Sbjct: 141 LPE 143

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  195 bits (498), Expect = 2e-54
 Identities = 109/585 (18%), Positives = 193/585 (32%), Gaps = 68/585 (11%)

Query: 3   HLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGV 62
             E L    N L  TI +     L +++ LDL+           +  S   L ++ L   
Sbjct: 34  STECLEFSFNVLP-TIQNTTFSRLINLTFLDLTRC-QIYWIHEDTFQSQHRLDTLVLTAN 91

Query: 63  HLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIP 122
            L           SG  +  L+ L    + IS      L   K L++L L +N I     
Sbjct: 92  PLIFMAE---TALSGPKA--LKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKL 146

Query: 123 QSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSW--FRVGGNKLTLEVRHDWIPPFQL 180
                   L+VL   NN ++  LS+   S+L + +     + GN +   +          
Sbjct: 147 PKGFPTEKLKVLDFQNNAIH-YLSKEDMSSLQQATNLSLNLNGNDIA-GIEPGAFDSAVF 204

Query: 181 VALGFHNCYVGSRFPQWLHSQK--HLQYLNLLNSGMSDLFPIRFLK-SAFQLKFLDLGLN 237
            +L F          + L +     L      +    D+ P  F       ++ ++L  +
Sbjct: 205 QSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKH 264

Query: 238 QFHGQITD-LTKVTQLLFLSVHSNNMSGPLPLIS--SNLVYLDLSNNSFSGSVSHYLCYR 294
            F    ++     + L  L + + ++S     +   S L  L LS N F           
Sbjct: 265 YFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFEN----LCQIS 320

Query: 295 INEPKSLIGLKLKDNSLQGEIPDCWMSY-QNLEILELSNNKFT--GKLPNSLGSLTSLIW 351
            +   SL  L +K N+ + E+    +   +NL  L+LS++           L +L+ L  
Sbjct: 321 ASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQS 380

Query: 352 LLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGP 411
           L L  N        + K C  LE LD+              +    + VL L  +     
Sbjct: 381 LNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDIS 440

Query: 412 LPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILT 471
                  L  LQ L+L  N+      +  N++  +           + L           
Sbjct: 441 SEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTL--------GRLEIL----------- 481

Query: 472 EKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIP 531
                                    +S  +L+       T+LK    ++ SHN  T    
Sbjct: 482 ------------------------VLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSI 517

Query: 532 ESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLSNNKLTG 576
           E++  ++ +  ++ + N +S  +P  +  L     +NL  N L  
Sbjct: 518 EALSHLKGIY-LNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  167 bits (424), Expect = 2e-44
 Identities = 90/515 (17%), Positives = 160/515 (31%), Gaps = 46/515 (8%)

Query: 83  LESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLN 142
            E L+   + +         +  NL  LDL    I      +      L  L +  N L 
Sbjct: 35  TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLI 94

Query: 143 GTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQK 202
             ++E   S    L         ++            L +L   + ++ S         +
Sbjct: 95  F-MAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTE 153

Query: 203 HLQYLNLLNSGMSDLFP--IRFLKSAFQLKFLDLGLNQFHGQITDLTKVTQLLFLSVHSN 260
            L+ L+  N+ +  L    +  L+ A     L+L  N   G             L+    
Sbjct: 154 KLKVLDFQNNAIHYLSKEDMSSLQQA-TNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGT 212

Query: 261 NMSGPLPLISSN-----LVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEI 315
                +     N     L      +                   S+  + L+ +      
Sbjct: 213 QNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVF--EGLCEMSVESINLQKHYFFNIS 270

Query: 316 PDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALES 375
            + +  +  L+ L+L+    + +LP+ L  L++L  L+L  N+      +S  N  +L  
Sbjct: 271 SNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTH 329

Query: 376 LDVGENEFVGNIPTWTGERFSRMVVLILRSNNFH--GPLPTRLCDLAFLQILDLADNNLF 433
           L +  N     + T   E    +  L L  ++         +L +L+ LQ L+L+ N   
Sbjct: 330 LSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPL 389

Query: 434 GTIPKCINNITG----MVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEIL 489
               +            +A         Q     L     L                  L
Sbjct: 390 SLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHL---LKV----------------L 430

Query: 490 NLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGA---MRSLESIDFS 546
           NL      S + L  S       L A Q LN   N F     +   +   +  LE +  S
Sbjct: 431 NL------SHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLS 484

Query: 547 VNQLSGEIPQSMSNLMSLNHLNLSNNKLTGKIPSS 581
              LS     + ++L  +NH++LS+N+LT     +
Sbjct: 485 FCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEA 519

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  157 bits (400), Expect = 4e-41
 Identities = 91/504 (18%), Positives = 169/504 (33%), Gaps = 66/504 (13%)

Query: 104 FKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGG 163
             + + L+ + N +      +   L NL  L +   ++   + E  F +  +L    +  
Sbjct: 32  PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIY-WIHEDTFQSQHRLDTLVLTA 90

Query: 164 NKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFL 223
           N L          P  L  L F    + S     LH+QK L+ L L ++ +S +   +  
Sbjct: 91  NPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGF 150

Query: 224 KSAFQLKFLDLGLNQFHGQITDLTKV---TQLLFLSVHSNNMSG--PLPLISSNLVYLDL 278
            +  +LK LD   N  H    +          L L+++ N+++G  P    S+    L+ 
Sbjct: 151 PT-EKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNF 209

Query: 279 SNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDC--WMSYQNLEILELSNNKFT 336
                   +   L  + +  +SL     +D   +   P     +   ++E + L  + F 
Sbjct: 210 GGTQNLLVIFKGL--KNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFF 267

Query: 337 GKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFS 396
               N+    + L  L L    LS  +P  L   + L+ L +  N+F  N+   +   F 
Sbjct: 268 NISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKF-ENLCQISASNFP 325

Query: 397 RMVVLILRSNNFHGPLPTR-LCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRS 455
            +  L ++ N     L T  L +L  L+ LDL+ +++  T   C   +  +        S
Sbjct: 326 SLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDI-ETSDCCNLQLRNL--------S 376

Query: 456 SQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKA 515
             Q L                                   ++S N               
Sbjct: 377 HLQSL-----------------------------------NLSYNEPLSLKTEAFKECPQ 401

Query: 516 TQSLNFSHNSFTGRIPESI-GAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLSNNKL 574
            + L+ +      +  +S    +  L+ ++ S + L     Q    L +L HLNL  N  
Sbjct: 402 LELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHF 461

Query: 575 TGKIPSS-------TQLQSFDASS 591
                          +L+    S 
Sbjct: 462 PKGNIQKTNSLQTLGRLEILVLSF 485

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  153 bits (388), Expect = 2e-39
 Identities = 102/586 (17%), Positives = 183/586 (31%), Gaps = 76/586 (12%)

Query: 3   HLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGV 62
            L+ L L  N L   +   AL    ++  L      G        + +   L+S+ L   
Sbjct: 82  RLDTLVLTANPLIF-MAETALSGPKALKHLFFIQT-GISSIDFIPLHNQKTLESLYLGSN 139

Query: 63  HLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDN--LDLANNSIVGP 120
           H+S   S  L          L+ LD ++++I     + +   +   N  L+L  N I G 
Sbjct: 140 HIS---SIKLPKGFPTEK--LKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG- 193

Query: 121 IPQSLGHLSNLRVLQIYNNKLNGT-LSEIHFSNLTKLSWFRVGGNKLTLEVRH--DWIPP 177
           I       +  + L     +        +  S +  L                  + +  
Sbjct: 194 IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCE 253

Query: 178 FQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLN 237
             + ++     Y  +      H    LQ L+L  + +S+L     L     LK L L  N
Sbjct: 254 MSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPS--GLVGLSTLKKLVLSAN 311

Query: 238 QFHGQITD-LTKVTQLLFLSVHSNNMSGPLPLIS----SNLVYLDLSNNSFSGSVSHYLC 292
           +F        +    L  LS+  N     L         NL  LDLS++    S    L 
Sbjct: 312 KFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQ 371

Query: 293 YRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNS-LGSLTSLIW 351
             +     L  L L  N       + +     LE+L+L+  +   K   S   +L  L  
Sbjct: 372 --LRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKV 429

Query: 352 LLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTG--ERFSRMVVLILRSNNFH 409
           L L  + L  +         AL+ L++  N F       T   +   R+ +L+L   +  
Sbjct: 430 LNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLS 489

Query: 410 GPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVI 469
                    L  +  +DL+ N L  +               + +     YL         
Sbjct: 490 SIDQHAFTSLKMMNHVDLSHNRLTSSSI------------EALSHLKGIYL--------- 528

Query: 470 LTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGR 529
                                     +++ N+++  +P  +  L   +++N   N     
Sbjct: 529 --------------------------NLASNHISIILPSLLPILSQQRTINLRQNPLDC- 561

Query: 530 IPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLSNNKLT 575
              +   +  LE    ++ +L         N   L  + LS+  L+
Sbjct: 562 ---TCSNIYFLEWYKENMQKLEDTEDTLCENPPLLRGVRLSDVTLS 604

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  129 bits (327), Expect = 1e-31
 Identities = 70/394 (17%), Positives = 125/394 (31%), Gaps = 40/394 (10%)

Query: 1   FIHLEYLSLRNNKLQGTIDSE-ALGNLTSISRLDLSLN--TGPEGRIPRSMASLCNLKSI 57
               + L+    +    I        + S+                +   +  + +++SI
Sbjct: 201 SAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEM-SVESI 259

Query: 58  NLRGVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSI 117
           NL+  +     S   N F       L+ LDL ++ +S  L   L     L  L L+ N  
Sbjct: 260 NLQKHYFFNISS---NTFHCFSG--LQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKF 313

Query: 118 VGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPP 177
                 S  +  +L  L I  N     L      NL  L    +  + +           
Sbjct: 314 ENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIE---------- 363

Query: 178 FQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLN 237
                               L +  HLQ LNL  +    L    F K   QL+ LDL   
Sbjct: 364 ------------TSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAF-KECPQLELLDLAFT 410

Query: 238 QFHGQITD--LTKVTQLLFLSVHSNNMSGPLPLI---SSNLVYLDLSNNSFSGSVSHYLC 292
           +   +        +  L  L++  + +      +      L +L+L  N F    +    
Sbjct: 411 RLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPK-GNIQKT 469

Query: 293 YRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWL 352
             +     L  L L    L       + S + +  ++LS+N+ T     +L  L  +  L
Sbjct: 470 NSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-L 528

Query: 353 LLGKNRLSGTIPVSLKNCTALESLDVGENEFVGN 386
            L  N +S  +P  L   +   ++++ +N     
Sbjct: 529 NLASNHISIILPSLLPILSQQRTINLRQNPLDCT 562

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  118 bits (298), Expect = 4e-28
 Identities = 59/345 (17%), Positives = 117/345 (33%), Gaps = 33/345 (9%)

Query: 255 LSVHSNNMSGPLPLISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGE 314
            +  +  ++     + ++   L+ S N      +      IN    L  L L    +   
Sbjct: 17  YNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLIN----LTFLDLTRCQIYWI 72

Query: 315 IPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALE 374
             D + S   L+ L L+ N        +L    +L  L   +  +S    + L N   LE
Sbjct: 73  HEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLE 132

Query: 375 SLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFG 434
           SL +G N    +I    G    ++ VL  ++N  H      +  L     L L  N    
Sbjct: 133 SLYLGSNHIS-SIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNG--- 188

Query: 435 TIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNL--- 491
                 N+I G +   +F  +  Q L      ++++  K    S  +++      ++   
Sbjct: 189 ------NDIAG-IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDE 241

Query: 492 --------------VKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAM 537
                         V+  ++ ++                Q L+ +    +  +P  +  +
Sbjct: 242 DISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGL 300

Query: 538 RSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLSNNKLTGKIPSST 582
            +L+ +  S N+       S SN  SL HL++  N    ++ +  
Sbjct: 301 STLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGC 345

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  100 bits (250), Expect = 4e-22
 Identities = 65/338 (19%), Positives = 116/338 (34%), Gaps = 38/338 (11%)

Query: 1   FIHLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLR 60
           F  L+ L L    L        L  L+++ +L LS N   E     S ++  +L  ++++
Sbjct: 277 FSGLQELDLTATHLSEL--PSGLVGLSTLKKLVLSAN-KFENLCQISASNFPSLTHLSIK 333

Query: 61  GVHLSQEISEILNIFSGCVSIELESLDLRSSSI--SGHLTDQLGQFKNLDNLDLANNSIV 118
           G     E+           +  L  LDL    I  S     QL    +L +L+L+ N  +
Sbjct: 334 GNTKRLELGT--GCLENLEN--LRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPL 389

Query: 119 GPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPF 178
               ++      L +L +   +L    ++  F NL  L    +  + L +     +    
Sbjct: 390 SLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLP 449

Query: 179 QLVALGFHNC---YVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLG 235
            L  L            +    L +   L+ L L    +S +       S   +  +DL 
Sbjct: 450 ALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSI-DQHAFTSLKMMNHVDLS 508

Query: 236 LNQFHGQITDLTKVTQLLFLSVHSNNMSGPLP---LISSNLVYLDLSNNSFS-------- 284
            N+      +     + ++L++ SN++S  LP    I S    ++L  N           
Sbjct: 509 HNRLTSSSIEALSHLKGIYLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIYF 568

Query: 285 -----------GSVSHYLCYRINEPKSLIGLKLKDNSL 311
                            LC     P  L G++L D +L
Sbjct: 569 LEWYKENMQKLEDTEDTLC---ENPPLLRGVRLSDVTL 603

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 65.4 bits (160), Expect = 3e-11
 Identities = 38/274 (13%), Positives = 66/274 (24%), Gaps = 76/274 (27%)

Query: 326 EILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVG 385
           +     N     ++P +L    S   L    N L      +      L  LD        
Sbjct: 15  KTYNCENLGLN-EIPGTL--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLD-------- 63

Query: 386 NIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITG 445
                            L     +            L  L L  N L       ++    
Sbjct: 64  -----------------LTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKA 106

Query: 446 MVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKS 505
           +                                        + L         +  ++  
Sbjct: 107 L----------------------------------------KHLFF------IQTGISSI 120

Query: 506 IPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLN 565
             + + N K  +SL    N  +            L+ +DF  N +     + MS+L    
Sbjct: 121 DFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQAT 180

Query: 566 H--LNLSNNKLTGKIPSSTQLQSFDASSFTGNDL 597
           +  LNL+ N + G  P +     F + +F G   
Sbjct: 181 NLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQN 214

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  170 bits (433), Expect = 2e-45
 Identities = 99/598 (16%), Positives = 180/598 (30%), Gaps = 93/598 (15%)

Query: 1   FIHLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLR 60
               + + L  N L+  + S +  N + +  LDLS     E    ++   L +L ++ L 
Sbjct: 31  PSSTKNIDLSFNPLK-ILKSYSFSNFSELQWLDLSRC-EIETIEDKAWHGLHHLSNLILT 88

Query: 61  GVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVG- 119
           G  +          FSG  S  LE+L    + ++   +  +GQ   L  L++A+N I   
Sbjct: 89  GNPIQSFSPGS---FSGLTS--LENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSC 143

Query: 120 PIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRV----GGNKLTLEVRHDWI 175
            +P    +L+NL  + +  N +   ++      L +     +      N +       +I
Sbjct: 144 KLPAYFSNLTNLVHVDLSYNYIQT-ITVNDLQFLRENPQVNLSLDMSLNPID------FI 196

Query: 176 PP--FQLVALGF----HNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRF-----LK 224
               FQ + L       N    +     L +   L    L+     D   +       ++
Sbjct: 197 QDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIME 256

Query: 225 SAFQLKFLDLGLNQ---FHGQITDLTKVTQLLFLSVHSNNMSGPLPLI-SSNLVYLDLSN 280
               +   +  L     F   I     +  +  +S+   ++     +        L +  
Sbjct: 257 GLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIR 316

Query: 281 NSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLP 340
                  +  L         L  L L  N          +   +L  L+LS N  +    
Sbjct: 317 CQLKQFPTLDL-------PFLKSLTLTMNKGSISFKKVALP--SLSYLDLSRNALSFSGC 367

Query: 341 NSL--GSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRM 398
            S       SL  L L  N     +  +      L+ LD   +               ++
Sbjct: 368 CSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKL 426

Query: 399 VVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQ- 457
           + L +   N           L  L  L +A N+                 +N F  ++  
Sbjct: 427 LYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTL-----------SNVFANTTNL 475

Query: 458 QYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQ 517
            +L                                   D+S+  L +        L   Q
Sbjct: 476 TFL-----------------------------------DLSKCQLEQISWGVFDTLHRLQ 500

Query: 518 SLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLSNNKLT 575
            LN SHN+           + SL ++D S N++            SL   NL+NN + 
Sbjct: 501 LLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  134 bits (339), Expect = 3e-33
 Identities = 85/527 (16%), Positives = 147/527 (27%), Gaps = 96/527 (18%)

Query: 83  LESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLN 142
            +++DL  + +    +     F  L  LDL+   I     ++   L +L  L +  N + 
Sbjct: 34  TKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQ 93

Query: 143 GTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQK 202
              S   FS LT L        KL        +  F +  L                   
Sbjct: 94  S-FSPGSFSGLTSLENLVAVETKLAS------LESFPIGQL------------------I 128

Query: 203 HLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHG----QITDLTKVTQLLF-LSV 257
            L+ LN+ ++ +       +  +   L  +DL  N         +  L +  Q+   L +
Sbjct: 129 TLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDM 188

Query: 258 HSNNMSG--PLPLISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSL---IGLKLKDNSLQ 312
             N +            L  L L  N  S ++       +         +G    + +L+
Sbjct: 189 SLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLE 248

Query: 313 GEIPDCWMSYQNLEILEL--SNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNC 370
              P       ++ I E   +              L ++  + L    +       +   
Sbjct: 249 IFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI--KYLEDVPKH 306

Query: 371 TALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADN 430
              +SL +   +     PT        +  L L  N            L  L  LDL+ N
Sbjct: 307 FKWQSLSIIRCQL-KQFPTLD---LPFLKSLTLTMNKGSISFK--KVALPSLSYLDLSRN 360

Query: 431 NLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILN 490
            L                  S++      L                            L+
Sbjct: 361 AL------------SFSGCCSYSDLGTNSL--------------------------RHLD 382

Query: 491 LVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPES-IGAMRSLESIDFSVNQ 549
           L      S N     +      L+  Q L+F H++       S   ++  L  +D S   
Sbjct: 383 L------SFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTN 435

Query: 550 LSGEIPQSMSNLMSLNHLNLSNNKLTGKIPSS-----TQLQSFDASS 591
              +       L SLN L ++ N       S+     T L   D S 
Sbjct: 436 TKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSK 482

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  111 bits (279), Expect = 1e-25
 Identities = 84/494 (17%), Positives = 141/494 (28%), Gaps = 122/494 (24%)

Query: 104 FKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGG 163
             +  N+DL+ N +      S  + S L+ L +   ++   + +  +  L  LS   + G
Sbjct: 31  PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIET-IEDKAWHGLHHLSNLILTG 89

Query: 164 NKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFL 223
           N +                  F                  L+ L  + + ++ L     +
Sbjct: 90  NPIQ-----------SFSPGSFSGL-------------TSLENLVAVETKLASLES-FPI 124

Query: 224 KSAFQLKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNNMSGPLPLISSNLVYLDLSNNSF 283
                LK L++  N  H               S         L     NLV++DLS N  
Sbjct: 125 GQLITLKKLNVAHNFIH---------------SCKLPAYFSNLT----NLVHVDLSYNYI 165

Query: 284 SGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLP-NS 342
                + L +    P+  + L +  N +   I D       L  L L  N  +  +    
Sbjct: 166 QTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGIKLHELTLRGNFNSSNIMKTC 224

Query: 343 LGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLI 402
           L +L  L    L          + +   + +E L                     +    
Sbjct: 225 LQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGL-----------------CDVTIDEFR 267

Query: 403 LRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPL 462
           L   N       +   LA +  + LA  ++                              
Sbjct: 268 LTYTNDFSDDIVKFHCLANVSAMSLAGVSI------------------------------ 297

Query: 463 PLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFS 522
                             + +E        +   + R  L +   L++  LK   SL  +
Sbjct: 298 ------------------KYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLK---SLTLT 336

Query: 523 HNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNL--MSLNHLNLSNNKLT---GK 577
            N  +  I     A+ SL  +D S N LS     S S+L   SL HL+LS N        
Sbjct: 337 MNKGS--ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSAN 394

Query: 578 IPSSTQLQSFDASS 591
                +LQ  D   
Sbjct: 395 FMGLEELQHLDFQH 408

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 91.2 bits (227), Expect = 3e-19
 Identities = 51/342 (14%), Positives = 102/342 (29%), Gaps = 38/342 (11%)

Query: 270 SSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILE 329
               +     +   S  V   +      P S   + L  N L+      + ++  L+ L+
Sbjct: 10  VVPNITYQCMDQKLS-KVPDDI------PSSTKNIDLSFNPLKILKSYSFSNFSELQWLD 62

Query: 330 LSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPT 389
           LS  +       +   L  L  L+L  N +    P S    T+LE+L   E +    + +
Sbjct: 63  LSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLAS-LES 121

Query: 390 WTGERFSRMVVLILRSNNFHG-PLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVA 448
           +   +   +  L +  N  H   LP    +L  L  +DL+ N +       +        
Sbjct: 122 FPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQF------ 175

Query: 449 ANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIP- 507
                 + Q  L L +  + I   +               + L  E  +  N  + +I  
Sbjct: 176 ---LRENPQVNLSLDMSLNPIDFIQDQAFQG---------IKL-HELTLRGNFNSSNIMK 222

Query: 508 LEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLES--------IDFSVNQLSGEIPQSMS 559
             + NL            F       I     +E            +      +      
Sbjct: 223 TCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFH 282

Query: 560 NLMSLNHLNLSNNKLTGKIPSSTQLQSFDASSFTGNDLCGAP 601
            L +++ ++L+   +   +    +   + + S     L   P
Sbjct: 283 CLANVSAMSLAGVSIK-YLEDVPKHFKWQSLSIIRCQLKQFP 323

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 61.6 bits (150), Expect = 4e-10
 Identities = 42/280 (15%), Positives = 71/280 (25%), Gaps = 80/280 (28%)

Query: 313 GEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTA 372
           G +  C     N+   +  + K + K+P+ + S  S   + L  N L      S  N + 
Sbjct: 2   GSLNPCIEVVPNI-TYQCMDQKLS-KVPDDIPS--STKNIDLSFNPLKILKSYSFSNFSE 57

Query: 373 LESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNL 432
           L+ LD                         L               L  L  L L  N +
Sbjct: 58  LQWLD-------------------------LSRCEIETIEDKAWHGLHHLSNLILTGNPI 92

Query: 433 FGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLV 492
               P   + +T +                                        E L   
Sbjct: 93  QSFSPGSFSGLTSL----------------------------------------ENLVA- 111

Query: 493 KETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTG-RIPESIGAMRSLESIDFSVNQLS 551
                    L       +  L   + LN +HN     ++P     + +L  +D S N + 
Sbjct: 112 -----VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ 166

Query: 552 GEIPQSMSNL----MSLNHLNLSNNKLTGKIPSSTQLQSF 587
                 +  L         L++S N +      + Q    
Sbjct: 167 TITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKL 206

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  171 bits (435), Expect = 5e-45
 Identities = 91/627 (14%), Positives = 179/627 (28%), Gaps = 119/627 (18%)

Query: 3   HLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGV 62
            +  LSL     +G +  +A+G LT +  L    +         S     + +       
Sbjct: 324 RVTGLSLAGFGAKGRV-PDAIGQLTELKVLSFGTH-----SETVSGRLFGDEELTPDMSE 377

Query: 63  HLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVG--- 119
                I              L   DL   +I+ +   ++   K    + L +  I     
Sbjct: 378 ERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNP--EMKPIKKDSRISLKDTQIGNLTN 435

Query: 120 ---PIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIP 176
               I +++  L+ L+++   N+        + + +            K        W  
Sbjct: 436 RITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDY------AKQYENEELSWSN 489

Query: 177 PFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNL----LNSGMSDLFPIRFLKSAF----Q 228
              L  +  +NC   ++ P +L+    LQ LN+      S          L        +
Sbjct: 490 LKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPK 549

Query: 229 LKFLDLGLNQFHG--QITDLTKVTQLLFLSVHSNNMSGPLPLIS--SNLVYLDLSNNSFS 284
           ++   +G N          L K+ +L  L    N +   L        L  L L  N   
Sbjct: 550 IQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRH-LEAFGTNVKLTDLKLDYNQIE 608

Query: 285 GSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCW--MSYQNLEILELSNNKFTGKLPNS 342
             +    C        + GL    N L+  IP+ +   S   +  ++ S NK   +  N 
Sbjct: 609 -EIPEDFC---AFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNI 663

Query: 343 LGSL-----TSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSR 397
             S+      +   + L  N +           + + ++ +  N    +IP         
Sbjct: 664 SCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLM-TSIP--------- 713

Query: 398 MVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQ 457
                    N   P      +   L  +DL  N L  ++             + F  ++ 
Sbjct: 714 --------ENSLKPKDGNYKNTYLLTTIDLRFNKL-TSLS------------DDFRATTL 752

Query: 458 QYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQ 517
            YL                            +++      S N  + S P +  N    +
Sbjct: 753 PYL--------------------------SNMDV------SYNCFS-SFPTQPLNSSQLK 779

Query: 518 SLNFSH------NSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLSN 571
           +    H      N    + P  I    SL  +    N +  ++ + ++    L  L++++
Sbjct: 780 AFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKLTP--QLYILDIAD 836

Query: 572 NKLT-GKIPSSTQLQSFDASSFTGNDL 597
           N      + S              +  
Sbjct: 837 NPNISIDVTSVCPYIEAGMYVLLYDKT 863

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  153 bits (387), Expect = 7e-39
 Identities = 75/533 (14%), Positives = 142/533 (26%), Gaps = 111/533 (20%)

Query: 91  SSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHF 150
                     L     +  L LA     G +P ++G L+ L+VL    +    +      
Sbjct: 309 DMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGD 368

Query: 151 SNLTKLSWFRVGGNKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLL 210
             LT                                +         +L   + L   +LL
Sbjct: 369 EELTPDMS------------------------EERKHRIRMHYKKMFLDYDQRLNLSDLL 404

Query: 211 NSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNNMSGPLPLIS 270
              ++    ++ +K   ++   D  +     +IT ++K  Q L                 
Sbjct: 405 QDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRL----------------- 447

Query: 271 SNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILEL 330
           + L  +  +N+ F+           N                      W + ++L  +EL
Sbjct: 448 TKLQIIYFANSPFTY---------DNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVEL 498

Query: 331 SNNKFTGKLPNSLGSLTSLIWLLLGKNRLSG---------TIPVSLKNCTALESLDVGEN 381
            N     +LP+ L  L  L  L +  NR             +         ++   +G N
Sbjct: 499 YNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN 558

Query: 382 EFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCIN 441
                  + + ++  ++ +L    N     L         L  L L  N +   IP+   
Sbjct: 559 NLEEFPASASLQKMVKLGLLDCVHNKVRH-LEA-FGTNVKLTDLKLDYNQI-EEIPEDFC 615

Query: 442 NITGM-----VAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETD 496
             T        + N         +P                          +  +    D
Sbjct: 616 AFTDQVEGLGFSHNKLKY-----IP-------------------NIFNAKSVYVM-GSVD 650

Query: 497 VSRNNLTK-----SIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLS 551
            S N +       S  ++        ++  S+N       E       + +I  S N ++
Sbjct: 651 FSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT 710

Query: 552 -------GEIPQSMSNLMSLNHLNLSNNKLTGKIPSS------TQLQSFDASS 591
                       +  N   L  ++L  NKLT  +           L + D S 
Sbjct: 711 SIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDFRATTLPYLSNMDVSY 762

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  101 bits (254), Expect = 2e-22
 Identities = 45/288 (15%), Positives = 88/288 (30%), Gaps = 53/288 (18%)

Query: 2   IHLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRG 61
           + L  L L  N+++  I  +       +  L  S N         +  S+  + S++   
Sbjct: 595 VKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSY 653

Query: 62  VHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSI---- 117
             +  E   I         I   ++ L  + I    T+       +  + L+NN +    
Sbjct: 654 NKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIP 713

Query: 118 ---VGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDW 174
              + P   +  +   L  + +  NKL     +   + L  LS   V  N  +       
Sbjct: 714 ENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFS------- 766

Query: 175 IPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDL 234
                              FP    +   L+   + +                     D 
Sbjct: 767 ------------------SFPTQPLNSSQLKAFGIRHQ-------------------RDA 789

Query: 235 GLNQFHGQI-TDLTKVTQLLFLSVHSNNMSGPLPLISSNLVYLDLSNN 281
             N+   Q  T +T    L+ L + SN++      ++  L  LD+++N
Sbjct: 790 EGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLTPQLYILDIADN 837

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 82.6 bits (204), Expect = 2e-16
 Identities = 31/177 (17%), Positives = 62/177 (35%), Gaps = 18/177 (10%)

Query: 1   FIHLEYLSLRNNKLQGTIDSEALGNLTSISRLDLS---LNTGPEGRIPRSMASLCNLKSI 57
            I+   ++L  N++Q    +E     + IS + LS   + + PE  +     +  N    
Sbjct: 672 GINASTVTLSYNEIQK-FPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTY-- 728

Query: 58  NLRGVHLSQ-EISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNL------DNL 110
            L  + L   +++ + + F       L ++D+  +  S     Q      L         
Sbjct: 729 LLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFS-SFPTQPLNSSQLKAFGIRHQR 787

Query: 111 DLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLT 167
           D   N I+   P  +    +L  LQI +N     + ++      +L    +  N   
Sbjct: 788 DAEGNRILRQWPTGITTCPSLIQLQIGSND----IRKVDEKLTPQLYILDIADNPNI 840

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 51.8 bits (124), Expect = 7e-07
 Identities = 14/106 (13%), Positives = 33/106 (31%)

Query: 480 GEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRS 539
            E I+  + L  + E    +N    S  +  T      + N   + +  +    +     
Sbjct: 265 AEYIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGR 324

Query: 540 LESIDFSVNQLSGEIPQSMSNLMSLNHLNLSNNKLTGKIPSSTQLQ 585
           +  +  +     G +P ++  L  L  L+   +  T         +
Sbjct: 325 VTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEE 370

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  141 bits (356), Expect = 6e-35
 Identities = 117/706 (16%), Positives = 226/706 (32%), Gaps = 118/706 (16%)

Query: 3   HLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGV 62
             E L L  N ++ T+ + +   L  +  L+L     P      +  +L NL+ ++L   
Sbjct: 25  TTERLLLSFNYIR-TVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS 83

Query: 63  HLSQEISEILNIFSGCVSIELESLDLRSSSISGHL--TDQLGQFKNLDNLDLANNSIVG- 119
            +   +    + F G     L  L L    +S  +         K L  LDL+ N I   
Sbjct: 84  KIYF-LHP--DAFQGLFH--LFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSL 138

Query: 120 PIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLT--KLSWFRVGGNKLTLEVRHDWIPP 177
            +  S G L++L+ +   +N++   + E     L    LS+F +  N L           
Sbjct: 139 YLHPSFGKLNSLKSIDFSSNQIF-LVCEHELEPLQGKTLSFFSLAANSLY---------- 187

Query: 178 FQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLN 237
              V++ +  C    R          L+ L++  +G +      F  +  + +   L L 
Sbjct: 188 -SRVSVDWGKCMNPFRN-------MVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILA 239

Query: 238 QFHGQITDLTKVTQLLFLSVHSNNMSGP-----LPLISSNLVYLDLSNNSFSGSVSHYLC 292
                         ++      +N+  P       L  S++ +LDLS+            
Sbjct: 240 ------------HHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVF-------- 279

Query: 293 YRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWL 352
             +N                      + + ++L++L L+ NK       +   L +L  L
Sbjct: 280 -SLN-------------------SRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVL 319

Query: 353 LLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPL 412
            L  N L      +      +  +D+ +N     I   T +   ++  L LR N      
Sbjct: 320 NLSYNLLGELYSSNFYGLPKVAYIDLQKNHI-AIIQDQTFKFLEKLQTLDLRDNAL---- 374

Query: 413 PTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTE 472
            T +  +  +  + L+ N L       +      ++ N        Y  L +    IL  
Sbjct: 375 -TTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILIL 433

Query: 473 KASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEM-----TNLKATQSLNFSHNSFT 527
             +  S     +       +++  +  N L  +   E+       L   Q L  +HN   
Sbjct: 434 NQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLN 493

Query: 528 GRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLSNNKLTGKIPSSTQLQSF 587
              P     + +L  +  + N+L+  +  +     +L  L++S N+L    P+     S 
Sbjct: 494 SLPPGVFSHLTALRGLSLNSNRLT-VLSHN-DLPANLEILDISRNQLL--APNPDVFVSL 549

Query: 588 DASSFTGNDL----------------------------CGAPLPKNCAENVSVSEDENGD 619
                T N                              C  P   +     S+S +   +
Sbjct: 550 SVLDITHNKFICECELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGCDE 609

Query: 620 EDEDEVDHWLYVSIALGFVVGFGCFIGPLIFNRRWRYNYYHFLNRL 665
           E+  +   +    +    +  F   I  +   R + +  Y    RL
Sbjct: 610 EEVLKSLKFSLFIVCTVTLTLFLMTILTVTKFRGFCFICYKTAQRL 655

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  115 bits (289), Expect = 1e-26
 Identities = 89/436 (20%), Positives = 147/436 (33%), Gaps = 77/436 (17%)

Query: 2   IHLEYLSLRNNKLQGTIDSEALGNL-----TSISRLDLSLN-----------TGPEGRIP 45
             L + SL  N L   +  +    +       +  LD+S N                   
Sbjct: 174 KTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQA 233

Query: 46  RSMASLCNLKSINLRGVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFK 105
            S+    ++        ++  +  +  N F+G     +  LDL    +    +      K
Sbjct: 234 FSLILAHHIMGAGFGFHNIK-DPDQ--NTFAGLARSSVRHLDLSHGFVFSLNSRVFETLK 290

Query: 106 NLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNK 165
           +L  L+LA N I     ++   L NL+VL +  N L   L   +F  L K+++  +  N 
Sbjct: 291 DLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLG-ELYSSNFYGLPKVAYIDLQKNH 349

Query: 166 LTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKS 225
           +                             Q     + LQ L+L ++ ++ +  I  +  
Sbjct: 350 IA------------------------IIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPD 385

Query: 226 AFQ-------LKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNNMSGPLPLISSNLVYLDL 278
            F        L  ++L  N  H     L  +  L FL      +         +L  L L
Sbjct: 386 IFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLL----RV--------PHLQILIL 433

Query: 279 SNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEI-----PDCWMSYQNLEILELSNN 333
           + N FS           +E  SL  L L +N LQ         D +    +L++L L++N
Sbjct: 434 NQNRFSSCSGDQTP---SENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHN 490

Query: 334 KFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGE 393
                 P     LT+L  L L  NRL+      L     LE LD+  N     +     +
Sbjct: 491 YLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRN----QLLAPNPD 544

Query: 394 RFSRMVVLILRSNNFH 409
            F  + VL +  N F 
Sbjct: 545 VFVSLSVLDITHNKFI 560

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  130 bits (329), Expect = 4e-32
 Identities = 101/567 (17%), Positives = 184/567 (32%), Gaps = 82/567 (14%)

Query: 3   HLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGV 62
             + L L  N L+  + S +  +   +  LDLS     +     +  SL +L ++ L G 
Sbjct: 29  STKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGN 86

Query: 63  HLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSI-VGPI 121
            +          FSG  S  L+ L    ++++      +G  K L  L++A+N I    +
Sbjct: 87  PIQSLALGA---FSGLSS--LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKL 141

Query: 122 PQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRV----GGNKLTLEVRHDWIPP 177
           P+   +L+NL  L + +NK+  ++       L ++    +      N +   ++      
Sbjct: 142 PEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKE 199

Query: 178 FQLVALGFHNCYVGSRFPQ-WLHSQKHLQYLNLLNSGMSDL-----FPIRFLKSAFQLKF 231
            +L  L   N +      +  +     L+   L+     +      F    L+    L  
Sbjct: 200 IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTI 259

Query: 232 LDLGLNQFHGQITDLTKVTQLLF----LSVHSNNMSGPLPLI-SSNLVYLDLSNNSFSGS 286
            +  L      + D+  +   L      S+ S  +        +    +L+L N  F   
Sbjct: 260 EEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFG-- 317

Query: 287 VSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFT--GKLPNSLG 344
                 +   + KSL  L    N       +  +   +LE L+LS N  +  G    S  
Sbjct: 318 -----QFPTLKLKSLKRLTFTSNKGGNAFSEVDLP--SLEFLDLSRNGLSFKGCCSQSDF 370

Query: 345 SLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILR 404
             TSL +L L  N +  T+  +      LE LD   +                ++ L + 
Sbjct: 371 GTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS 429

Query: 405 SNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPL 464
             +           L+ L++L +A N+                  + FT           
Sbjct: 430 HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL-----------PDIFTELRN------- 471

Query: 465 DGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHN 524
                LT                 L+L      S+  L +  P    +L + Q LN + N
Sbjct: 472 -----LTF----------------LDL------SQCQLEQLSPTAFNSLSSLQVLNMASN 504

Query: 525 SFTGRIPESIGAMRSLESIDFSVNQLS 551
                       + SL+ I    N   
Sbjct: 505 QLKSVPDGIFDRLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  114 bits (287), Expect = 8e-27
 Identities = 90/520 (17%), Positives = 163/520 (31%), Gaps = 83/520 (15%)

Query: 104 FKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGG 163
             +  NLDL+ N +      S      L+VL +   ++  T+ +  + +L+ LS   + G
Sbjct: 27  PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTG 85

Query: 164 NKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFL 223
           N +       +     L  L      + S     +   K L+ LN+ ++ +       + 
Sbjct: 86  NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF 145

Query: 224 KSAFQLKFLDLGLNQFH----GQITDLTKVTQLLF-LSVHSNNMSG--PLPLISSNLVYL 276
            +   L+ LDL  N+        +  L ++  L   L +  N M+   P       L  L
Sbjct: 146 SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKL 205

Query: 277 DLSNNSFSGSVSHYLCYRINEPKSL---IGLKLKDNSLQGEIPDCWMSYQNLEILELSNN 333
            L NN  S +V       +   +     +G    + +L+           NL I E    
Sbjct: 206 TLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 265

Query: 334 K---FTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTW 390
               +   + +    LT++    L    +      S       + L++   +F G  PT 
Sbjct: 266 YLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS--YNFGWQHLELVNCKF-GQFPTL 322

Query: 391 TGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAAN 450
              +   +  L   SN           DL  L+ LDL+ N L                  
Sbjct: 323 ---KLKSLKRLTFTSNKGGNAFS--EVDLPSLEFLDLSRNGL------------------ 359

Query: 451 SFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEM 510
               S +        G   L                  L+L      S N +  ++    
Sbjct: 360 ----SFKGCCSQSDFGTTSLKY----------------LDL------SFNGVI-TMSSNF 392

Query: 511 TNLKATQSLNFSHNSFTGRIPESI-GAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNL 569
             L+  + L+F H++       S+  ++R+L  +D S            + L SL  L +
Sbjct: 393 LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM 452

Query: 570 SNNKLTGKIPSST---------------QLQSFDASSFTG 594
           + N                         QL+    ++F  
Sbjct: 453 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 492

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  112 bits (283), Expect = 3e-26
 Identities = 83/451 (18%), Positives = 157/451 (34%), Gaps = 32/451 (7%)

Query: 3   HLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGV 62
            L+ L      L  ++++  +G+L ++  L+++ N     ++P   ++L NL+ ++L   
Sbjct: 101 SLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159

Query: 63  HLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIP 122
            +       L +    + +   SLDL  + ++  +     +   L  L L NN     + 
Sbjct: 160 KIQSIYCTDLRVLHQ-MPLLNLSLDLSLNPMN-FIQPGAFKEIRLHKLTLRNNFDSLNVM 217

Query: 123 Q-SLGHLSNLRVLQIYNNKL--NGTLSEIHFSNLTKLSWFRVGGNKLT-LEVRHDWIP-- 176
           +  +  L+ L V ++   +    G L +   S L  L    +   +L  L+   D I   
Sbjct: 218 KTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDL 277

Query: 177 ---PFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLD 233
                 + +    +  +              Q+L L+N        ++       LK L 
Sbjct: 278 FNCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCKFGQFPTLKLK----SLKRLT 331

Query: 234 LGLNQFHGQITDLTKVTQLLFLSVHSNNMSGPLPLISS-----NLVYLDLSNNSFSGSVS 288
              N+          +  L FL +  N +S       S     +L YLDLS N       
Sbjct: 332 FTSNKGGN-AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI---- 386

Query: 289 HYLCYRINEPKSLIGLKLKDNSLQGEIPDC-WMSYQNLEILELSNNKFTGKLPNSLGSLT 347
             +       + L  L  + ++L+       ++S +NL  L++S+             L+
Sbjct: 387 -TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS 445

Query: 348 SLIWLLLGKNRLSGTI-PVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSN 406
           SL  L +  N       P        L  LD+ + +    +        S + VL + SN
Sbjct: 446 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL-EQLSPTAFNSLSSLQVLNMASN 504

Query: 407 NFHGPLPTRLCDLAFLQILDLADNNLFGTIP 437
                       L  LQ + L  N    + P
Sbjct: 505 QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 79.4 bits (196), Expect = 1e-15
 Identities = 48/294 (16%), Positives = 89/294 (30%), Gaps = 49/294 (16%)

Query: 1   FIHLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLR 60
             ++   SL +  ++   D         +  ++      P          L +LK +   
Sbjct: 281 LTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTL-------KLKSLKRLTFT 333

Query: 61  GVHLSQEISEILNIFSGCVSIELESLDLRSSSIS--GHLTDQLGQFKNLDNLDLANNSIV 118
                   S          S  LE LDL  + +S  G  +       +L  LDL+ N ++
Sbjct: 334 SNKGGNAFS-----EVDLPS--LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI 386

Query: 119 GPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPF 178
             +  +   L  L  L   ++ L        F +L  L +  +      +          
Sbjct: 387 T-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV------AFNG 439

Query: 179 QLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQ 238
               L                    L+ L +  +   + F          L FLDL   Q
Sbjct: 440 IFNGL------------------SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 481

Query: 239 FHGQITD--LTKVTQLLFLSVHSNNMSGPLPL----ISSNLVYLDLSNNSFSGS 286
              Q++      ++ L  L++ SN +   +P       ++L  + L  N +  S
Sbjct: 482 LE-QLSPTAFNSLSSLQVLNMASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCS 533

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 67.4 bits (165), Expect = 7e-12
 Identities = 25/147 (17%), Positives = 58/147 (39%), Gaps = 5/147 (3%)

Query: 4   LEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVH 63
           LE+L  +++ L+   +     +L ++  LD+S               L +L+ + + G  
Sbjct: 398 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT-RVAFNGIFNGLSSLEVLKMAGNS 456

Query: 64  LSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQ 123
             +      +IF+   +  L  LDL    +            +L  L++A+N +      
Sbjct: 457 FQENFLP--DIFTELRN--LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDG 512

Query: 124 SLGHLSNLRVLQIYNNKLNGTLSEIHF 150
               L++L+ + ++ N  + +   I +
Sbjct: 513 IFDRLTSLQKIWLHTNPWDCSCPRIDY 539

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  124 bits (314), Expect = 1e-30
 Identities = 94/550 (17%), Positives = 180/550 (32%), Gaps = 96/550 (17%)

Query: 9   LRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEI 68
            ++  +           L    +  L      +     S   L  + ++    + +   I
Sbjct: 9   TQDTPIN---QIFTDTALAEKMKTVLGKTNVTD---TVSQTDLDQVTTLQADRLGIK-SI 61

Query: 69  SEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHL 128
             +  +        L  ++  ++ ++      L     L ++ + NN I    P  L +L
Sbjct: 62  DGVEYL------NNLTQINFSNNQLTDI--TPLKNLTKLVDILMNNNQIADITP--LANL 111

Query: 129 SNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQLVALGFHNC 188
           +NL  L ++NN++          NLT L+   +  N ++       I             
Sbjct: 112 TNLTGLTLFNNQITDI---DPLKNLTNLNRLELSSNTISD------ISALS--------- 153

Query: 189 YVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQITDLTK 248
                          LQ L+  N  ++DL P+  L +   L+ LD+  N+    I+ L K
Sbjct: 154 -----------GLTSLQQLSFGNQ-VTDLKPLANLTT---LERLDISSNKVSD-ISVLAK 197

Query: 249 VTQLLFLSVHSNNMSGPLPLIS-SNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLK 307
           +T L  L   +N +S   PL   +NL  L L+ N      +      +    +L  L L 
Sbjct: 198 LTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT------LASLTNLTDLDLA 251

Query: 308 DNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSL 367
           +N +    P   ++   L  L+L  N+ +    + L  LT+L  L L +N+L    P  +
Sbjct: 252 NNQISNLAPLSGLT--KLTELKLGANQISN--ISPLAGLTALTNLELNENQLEDISP--I 305

Query: 368 KNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDL 427
            N   L  L +  N      P       +++  L   +N         L +L  +  L  
Sbjct: 306 SNLKNLTYLTLYFNNISDISPV---SSLTKLQRLFFYNNKVSDVSS--LANLTNINWLSA 360

Query: 428 ADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDE 487
             N +       +  +  +        + Q +   P++    ++                
Sbjct: 361 GHNQI-----SDLTPLANLTRITQLGLNDQAWTNAPVNYKANVS---------------- 399

Query: 488 ILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSV 547
           I N VK             P  +++  +    + + N  +    E         +I    
Sbjct: 400 IPNTVKN-----VTGALIAPATISDGGSYTEPDITWNLPSY-TNEVSYTFSQPVTIGKGT 453

Query: 548 NQLSGEIPQS 557
              SG + Q 
Sbjct: 454 TTFSGTVTQP 463

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  123 bits (311), Expect = 3e-30
 Identities = 98/449 (21%), Positives = 159/449 (35%), Gaps = 55/449 (12%)

Query: 1   FIHLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLR 60
                   L    +  T+   +  +L  ++ L          +    +  L NL  IN  
Sbjct: 23  LAEKMKTVLGKTNVTDTV---SQTDLDQVTTLQADRL---GIKSIDGVEYLNNLTQINFS 76

Query: 61  GVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGP 120
              L+ +I+ + N+       +L  + + ++ I+      L    NL  L L NN I   
Sbjct: 77  NNQLT-DITPLKNL------TKLVDILMNNNQIAD--ITPLANLTNLTGLTLFNNQITDI 127

Query: 121 IPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPF-- 178
            P  L +L+NL  L++ +N ++        S LT L     G            + P   
Sbjct: 128 DP--LKNLTNLNRLELSSNTISDI---SALSGLTSLQQLSFGNQVTD-------LKPLAN 175

Query: 179 --QLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGL 236
              L  L   +  V       L    +L+ L   N+ +SD+ P+  L +   L  L L  
Sbjct: 176 LTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITPLGILTN---LDELSLNG 230

Query: 237 NQFHGQITDLTKVTQLLFLSVHSNNMSGPLPLIS-SNLVYLDLSNNSFSGSVSHYLCYRI 295
           NQ    I  L  +T L  L + +N +S   PL   + L  L L  N  S          +
Sbjct: 231 NQLKD-IGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISP------L 283

Query: 296 NEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLG 355
               +L  L+L +N L+   P   +   NL  L L  N  +   P  + SLT L  L   
Sbjct: 284 AGLTALTNLELNENQLEDISPISNLK--NLTYLTLYFNNISDISP--VSSLTKLQRLFFY 339

Query: 356 KNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTR 415
            N++S     SL N T +  L  G N+     P       +R+  L L    +       
Sbjct: 340 NNKVSD--VSSLANLTNINWLSAGHNQISDLTPL---ANLTRITQLGLNDQAWTNAPVNY 394

Query: 416 LCDLAFLQILDLADNNLFGTIPKCINNIT 444
             +++    +      L    P  I++  
Sbjct: 395 KANVSIPNTVKNVTGAL--IAPATISDGG 421

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  122 bits (308), Expect = 7e-30
 Identities = 95/436 (21%), Positives = 167/436 (38%), Gaps = 73/436 (16%)

Query: 1   FIHLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLN--TGPEGRIPRSMASLCNLKSIN 58
             +L  ++  NN+L    D   L NLT +  + ++ N            +A+L NL  + 
Sbjct: 67  LNNLTQINFSNNQLT---DITPLKNLTKLVDILMNNNQIADITP-----LANLTNLTGLT 118

Query: 59  LRGVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIV 118
           L    ++      ++      +  L  L+L S++IS      L    +L  L   N  + 
Sbjct: 119 LFNNQITD-----IDPLKNLTN--LNRLELSSNTISD--ISALSGLTSLQQLSFGNQ-VT 168

Query: 119 GPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPF 178
              P  L +L+ L  L I +NK++  +S +  + LT L       N+++       I P 
Sbjct: 169 DLKP--LANLTTLERLDISSNKVSD-ISVL--AKLTNLESLIATNNQISD------ITPL 217

Query: 179 QLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQ 238
            ++                     +L  L+L  + + D+  +  L     L  LDL  NQ
Sbjct: 218 GIL--------------------TNLDELSLNGNQLKDIGTLASLT---NLTDLDLANNQ 254

Query: 239 FHGQITDLTKVTQLLFLSVHSNNMSGPLPLIS-SNLVYLDLSNNSFSGSVSHYLCYRINE 297
               +  L+ +T+L  L + +N +S   PL   + L  L+L+ N             I+ 
Sbjct: 255 ISN-LAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP------ISN 307

Query: 298 PKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKN 357
            K+L  L L  N++    P    S   L+ L   NNK +    +SL +LT++ WL  G N
Sbjct: 308 LKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHN 363

Query: 358 RLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPL-PTRL 416
           ++S   P  L N T +  L + +  +            + + +     N     + P  +
Sbjct: 364 QISDLTP--LANLTRITQLGLNDQAWTNAPV----NYKANVSIPNTVKNVTGALIAPATI 417

Query: 417 CDLAFLQILDLADNNL 432
            D       D+  N  
Sbjct: 418 SDGGSYTEPDITWNLP 433

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  121 bits (305), Expect = 2e-29
 Identities = 106/512 (20%), Positives = 174/512 (33%), Gaps = 94/512 (18%)

Query: 71  ILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSN 130
           I  IF+     E     L  ++++  ++        +  L      I       + +L+N
Sbjct: 14  INQIFTDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGI--KSIDGVEYLNN 69

Query: 131 LRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPF----QLVALGFH 186
           L  +   NN+L          NLTKL    +  N++        I P      L  L   
Sbjct: 70  LTQINFSNNQLTDI---TPLKNLTKLVDILMNNNQIAD------ITPLANLTNLTGLTLF 120

Query: 187 NCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQITDL 246
           N  +    P  L +  +L  L L ++ +SD+  +  L S   L+ L  G       +  L
Sbjct: 121 NNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTS---LQQLSFGNQVTD--LKPL 173

Query: 247 TKVTQLLFLSVHSNNMSGPLPLIS-SNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLK 305
             +T L  L + SN +S    L   +NL  L  +NN  S          +    +L  L 
Sbjct: 174 ANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP------LGILTNLDELS 227

Query: 306 LKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPV 365
           L  N L+       ++  NL  L+L+NN+ +   P  L  LT L  L LG N++S   P 
Sbjct: 228 LNGNQLKDIGTLASLT--NLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP- 282

Query: 366 SLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQIL 425
            L   TAL +L++ EN+     P         +  L L  NN     P  +  L  LQ L
Sbjct: 283 -LAGLTALTNLELNENQLEDISPI---SNLKNLTYLTLYFNNISDISP--VSSLTKLQRL 336

Query: 426 DLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEY 485
              +N +                                                  +  
Sbjct: 337 FFYNNKV------------------------------------------------SDVSS 348

Query: 486 DEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDF 545
              L  +       N ++   PL   NL     L  +  ++T   P +  A  S+ +   
Sbjct: 349 LANLTNINWLSAGHNQISDLTPLA--NLTRITQLGLNDQAWTN-APVNYKANVSIPNTVK 405

Query: 546 SVNQLSGEIPQSMSNLMSLNHLNLSNNKLTGK 577
           +V       P ++S+  S    +++ N  +  
Sbjct: 406 NVTGAL-IAPATISDGGSYTEPDITWNLPSYT 436

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  120 bits (302), Expect = 4e-29
 Identities = 94/487 (19%), Positives = 165/487 (33%), Gaps = 108/487 (22%)

Query: 101 LGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFR 160
                      L   ++   + Q+   L  +  LQ     +  ++  +    L  L+   
Sbjct: 20  DTALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIK-SIDGV--EYLNNLTQIN 74

Query: 161 VGGNKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPI 220
              N+LT       I P +                    +   L  + + N+ ++D+ P+
Sbjct: 75  FSNNQLTD------ITPLK--------------------NLTKLVDILMNNNQIADITPL 108

Query: 221 RFLKSAFQLKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNNMSGPLPLIS-SNLVYLDLS 279
             L     L  L L  NQ    I  L  +T L  L + SN +S    L   ++L  L   
Sbjct: 109 ANLT---NLTGLTLFNNQITD-IDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFG 164

Query: 280 NNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKL 339
           N              + + K L  L                    LE L++S+NK +   
Sbjct: 165 NQ-------------VTDLKPLANLT------------------TLERLDISSNKVSD-- 191

Query: 340 PNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMV 399
            + L  LT+L  L+   N++S   P  L   T L+ L +  N+ + +I T      + + 
Sbjct: 192 ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQ-LKDIGTL--ASLTNLT 246

Query: 400 VLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQY 459
            L L +N      P  L  L  L  L L  N +       I+ + G+ A  +   +  Q 
Sbjct: 247 DLDLANNQISNLAP--LSGLTKLTELKLGANQI-----SNISPLAGLTALTNLELNENQ- 298

Query: 460 LPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSL 519
                     L +          I     L  +    +  NN++   P+   +L   Q L
Sbjct: 299 ----------LED----------ISPISNLKNLTYLTLYFNNISDISPVS--SLTKLQRL 336

Query: 520 NFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLSNNKLTGKIP 579
            F +N  +     S+  + ++  +    NQ+S   P  ++NL  +  L L++   T    
Sbjct: 337 FFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPV 392

Query: 580 SSTQLQS 586
           +     S
Sbjct: 393 NYKANVS 399

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 93.1 bits (232), Expect = 3e-20
 Identities = 72/386 (18%), Positives = 138/386 (35%), Gaps = 57/386 (14%)

Query: 209 LLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNNMSGPLPL 268
             ++ ++ +F    L    +     LG           T + Q+  L      +     +
Sbjct: 9   TQDTPINQIFTDTALA---EKMKTVLGKTNVTD-TVSQTDLDQVTTLQADRLGIKSIDGV 64

Query: 269 IS-SNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEI 327
              +NL  ++ SNN  +          +     L+ + + +N +    P   ++  NL  
Sbjct: 65  EYLNNLTQINFSNNQLTDITP------LKNLTKLVDILMNNNQIADITPLANLT--NLTG 116

Query: 328 LELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNI 387
           L L NN+ T    + L +LT+L  L L  N +S     +L   T+L+ L  G N+     
Sbjct: 117 LTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFG-NQVTDLK 171

Query: 388 PTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMV 447
           P       + +  L + SN         L  L  L+ L   +N +       I  +  + 
Sbjct: 172 PL---ANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQI-----SDITPLGILT 221

Query: 448 AANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIP 507
             +  + +  Q                  + +   +     L  + + D++ N ++   P
Sbjct: 222 NLDELSLNGNQ------------------LKDIGTLAS---LTNLTDLDLANNQISNLAP 260

Query: 508 LEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHL 567
           L    L     L    N  +      +  + +L +++ + NQL    P  +SNL +L +L
Sbjct: 261 LS--GLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYL 314

Query: 568 NLSNNKLTGKIPSS--TQLQSFDASS 591
            L  N ++   P S  T+LQ     +
Sbjct: 315 TLYFNNISDISPVSSLTKLQRLFFYN 340

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 84.6 bits (210), Expect = 2e-17
 Identities = 68/341 (19%), Positives = 122/341 (35%), Gaps = 56/341 (16%)

Query: 4   LEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVH 63
           LE L + +NK+    D   L  LT++  L  + N     +I   +  L  L   NL  + 
Sbjct: 179 LERLDISSNKVS---DISVLAKLTNLESLIATNN-----QI-SDITPLGILT--NLDELS 227

Query: 64  LSQ-EISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIP 122
           L+  ++ +I    +   +  L  LDL ++ IS      L     L  L L  N I    P
Sbjct: 228 LNGNQLKDI-GTLASLTN--LTDLDLANNQISNL--APLSGLTKLTELKLGANQISNISP 282

Query: 123 QSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQLVA 182
             L  L+ L  L++  N+L         SNL  L++  +  N ++       I P     
Sbjct: 283 --LAGLTALTNLELNENQLEDI---SPISNLKNLTYLTLYFNNIS------DISPVS--- 328

Query: 183 LGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQ 242
                            S   LQ L   N+ +SD+  +  L +   + +L  G NQ    
Sbjct: 329 -----------------SLTKLQRLFFYNNKVSDVSSLANLTN---INWLSAGHNQISD- 367

Query: 243 ITDLTKVTQLLFLSVHSNNMSGPLPLISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLI 302
           +T L  +T++  L ++    +       +N+   +   N     ++      I++  S  
Sbjct: 368 LTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAP---ATISDGGSYT 424

Query: 303 GLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSL 343
              +  N       +   ++     +      F+G +   L
Sbjct: 425 EPDITWNLPS-YTNEVSYTFSQPVTIGKGTTTFSGTVTQPL 464

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 55.0 bits (133), Expect = 4e-08
 Identities = 27/167 (16%), Positives = 58/167 (34%), Gaps = 22/167 (13%)

Query: 3   HLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLN--TGPEGRIPRSMASLCNLKSINLR 60
            L  L L  N+L+   D   + NL +++ L L  N  +         ++SL  L+ +   
Sbjct: 288 ALTNLELNENQLE---DISPISNLKNLTYLTLYFNNISDISP-----VSSLTKLQRLFFY 339

Query: 61  GVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGP 120
              +S ++S + N+        +  L    + IS      L     +  L L + +    
Sbjct: 340 NNKVS-DVSSLANL------TNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNA 390

Query: 121 IPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLT 167
                 + +N+ +     N     ++    S+    +   +  N  +
Sbjct: 391 PV---NYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLPS 434

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 43.8 bits (104), Expect = 2e-04
 Identities = 14/103 (13%), Positives = 33/103 (32%), Gaps = 9/103 (8%)

Query: 492 VKETDVSRNNLTKSI-PLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQL 550
           +    ++++     I       L           + T  +      +  + ++      +
Sbjct: 3   LGSATITQDTPINQIFTDT--ALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGI 58

Query: 551 SGEIPQSMSNLMSLNHLNLSNNKLTGKIPSS--TQLQSFDASS 591
                  +  L +L  +N SNN+LT   P    T+L     ++
Sbjct: 59  K--SIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNN 99

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  125 bits (317), Expect = 1e-30
 Identities = 99/583 (16%), Positives = 173/583 (29%), Gaps = 111/583 (19%)

Query: 3   HLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRI----PRSMASLCNLKSIN 58
            ++ L L  NK+   I    L    ++  L L  +     RI      +  SL +L+ ++
Sbjct: 27  AMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSS-----RINTIEGDAFYSLGSLEHLD 80

Query: 59  LRGVHLSQEISEILNIFSGCVSIELESLDLRSSSISG-HLTDQLGQFKNLDNLDLA-NNS 116
           L   HLS  +S   + F    S  L+ L+L  +      +T       NL  L +    +
Sbjct: 81  LSDNHLS-SLSS--SWFGPLSS--LKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVET 135

Query: 117 IVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIP 176
                      L++L  L+I    L          ++  +    +  ++    +      
Sbjct: 136 FSEIRRIDFAGLTSLNELEIKALSLR-NYQSQSLKSIRDIHHLTLHLSESAFLLEIFADI 194

Query: 177 PFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGL 236
              +  L   +  +       L   +    +  L    S L    F +    LK L   L
Sbjct: 195 LSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNEL---LKLLRYIL 251

Query: 237 NQFHGQITDLTKVTQLLFLSVHSNNMSGPLPLISSNLVYLDLSNNSFSGSVSHYLCYRIN 296
                +  D T      F    S+ +S    + +  +  L +        +S        
Sbjct: 252 ELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYS---- 307

Query: 297 EPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKL---PNSLGSLTSLIWLL 353
             + +  + ++++ +           ++LE L+LS N    +        G+  SL  L+
Sbjct: 308 LLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLV 367

Query: 354 LGKNRLS--GTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGP 411
           L +N L         L     L SLD+                          S N   P
Sbjct: 368 LSQNHLRSMQKTGEILLTLKNLTSLDI--------------------------SRNTFHP 401

Query: 412 LPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILT 471
           +P        ++ L+L+   +   +  CI                               
Sbjct: 402 MPDSCQWPEKMRFLNLSSTGI-RVVKTCI------------------------------- 429

Query: 472 EKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIP 531
                               ++  DVS NNL  S  L +  L   Q L  S N     +P
Sbjct: 430 -----------------PQTLEVLDVSNNNLD-SFSLFLPRL---QELYISRNKLK-TLP 467

Query: 532 ESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLSNNKL 574
           ++      L  +  S NQL          L SL  + L  N  
Sbjct: 468 DA-SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  107 bits (269), Expect = 1e-24
 Identities = 83/516 (16%), Positives = 159/516 (30%), Gaps = 81/516 (15%)

Query: 83  LESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLN 142
           ++SLDL  + I+      L    NL  L L ++ I      +   L +L  L + +N L+
Sbjct: 28  MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS 87

Query: 143 GTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPP-FQLVALGFHNCYVGSRFP-QWLHS 200
            +LS   F  L+ L +  + GN           P    L  L   N    S         
Sbjct: 88  -SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAG 146

Query: 201 QKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHG-QITDLTKVTQLLFLSVHS 259
              L  L +    + +       KS   +  L L L++           ++ + +L +  
Sbjct: 147 LTSLNELEIKALSLRNYQSQSL-KSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRD 205

Query: 260 NNMSG------PLPLISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQG 313
            N++       P+  +SS +  L    +  +    + L   +     L  ++  D +L G
Sbjct: 206 TNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNG 265

Query: 314 EIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTAL 373
                        + + + ++             ++  L + +  L   +         +
Sbjct: 266 -------------LGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKV 312

Query: 374 ESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNF---HGPLPTRLCDLAFLQILDLADN 430
           + + V  ++    +P    +    +  L L  N     +            LQ L L+ N
Sbjct: 313 KRITVENSKV-FLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN 371

Query: 431 NLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILN 490
           +L  ++ K    +  +         +   L                              
Sbjct: 372 HL-RSMQKTGEILLTL--------KNLTSL------------------------------ 392

Query: 491 LVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQL 550
                D+SRN     +P      +  + LN S       +       ++LE +D S N L
Sbjct: 393 -----DISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKT--CIPQTLEVLDVSNNNL 443

Query: 551 SGEIPQSMSNLMSLNHLNLSNNKLTGKIPSSTQLQS 586
                     L  L  L +S NKL   +P ++    
Sbjct: 444 D-SFS---LFLPRLQELYISRNKLK-TLPDASLFPV 474

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  105 bits (263), Expect = 8e-24
 Identities = 72/417 (17%), Positives = 149/417 (35%), Gaps = 40/417 (9%)

Query: 3   HLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGV 62
           +L+ L + N +    I       LTS++ L++   +       +S+ S+ ++  + L   
Sbjct: 124 NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL-RNYQSQSLKSIRDIHHLTLHLS 182

Query: 63  HLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIP 122
             +  +    +I S      +  L+LR ++++      L   +    +            
Sbjct: 183 ESAFLLEIFADILSS-----VRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTD 237

Query: 123 QSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQLVA 182
           +S   L  L        +    LSE+ F + T         ++  +      +    +  
Sbjct: 238 ESFNELLKL-------LRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRR 290

Query: 183 LGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQ 242
           L     Y+           + ++ + + NS +  + P  F +    L+FLDL  N    +
Sbjct: 291 LHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLV-PCSFSQHLKSLEFLDLSENLMVEE 349

Query: 243 I----TDLTKVTQLLFLSVHSNNMSGPLPLIS------SNLVYLDLSNNSFSGSVSHYLC 292
                        L  L +  N++   +           NL  LD+S N+F     H + 
Sbjct: 350 YLKNSACKGAWPSLQTLVLSQNHLRS-MQKTGEILLTLKNLTSLDISRNTF-----HPMP 403

Query: 293 YRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWL 352
                P+ +  L L    ++  +  C    Q LE+L++SNN         L  L  L   
Sbjct: 404 DSCQWPEKMRFLNLSSTGIR-VVKTCIP--QTLEVLDVSNNNLD-SFSLFLPRLQELY-- 457

Query: 353 LLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFH 409
            + +N+L  T+P +      L  + +  N+   ++P    +R + +  + L +N + 
Sbjct: 458 -ISRNKLK-TLPDAS-LFPVLLVMKISRNQL-KSVPDGIFDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 96.3 bits (240), Expect = 5e-21
 Identities = 81/513 (15%), Positives = 164/513 (31%), Gaps = 102/513 (19%)

Query: 104 FKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGG 163
              + +LDL+ N I       L   +NL+VL + ++++N T+    F +L  L    +  
Sbjct: 25  TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN-TIEGDAFYSLGSLEHLDLSD 83

Query: 164 NKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFL 223
           N L+       +                     W      L+YLNL+ +    L      
Sbjct: 84  NHLS------SLSS------------------SWFGPLSSLKYLNLMGNPYQTLGVTSLF 119

Query: 224 KSAFQLKFLDLGLNQFHGQI--TDLTKVTQLLFLSVHSNNMS-------GPLPLISSNLV 274
            +   L+ L +G  +   +I   D   +T L  L + + ++          +     ++ 
Sbjct: 120 PNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIR----DIH 175

Query: 275 YLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNK 334
           +L L  +  +  +  +     +   S+  L+L+D +L           +    ++    +
Sbjct: 176 HLTLHLSESAFLLEIFA----DILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFR 231

Query: 335 FTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGER 394
            +     S   L  L+  +L  + +         +CT     D   +E    +       
Sbjct: 232 GSVLTDESFNELLKLLRYILELSEVE------FDDCTLNGLGDFNPSES-DVVSELGKVE 284

Query: 395 FSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCI-------------- 440
              +  L +        L T    L  ++ + + ++ +F  +P                 
Sbjct: 285 TVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSE 343

Query: 441 NNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRN 500
           N +      NS  + +   L                          + L L      S+N
Sbjct: 344 NLMVEEYLKNSACKGAWPSL--------------------------QTLVL------SQN 371

Query: 501 NLTK--SIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSM 558
           +L         +  LK   SL+ S N+F   +P+S      +  ++ S   +   +    
Sbjct: 372 HLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTC- 428

Query: 559 SNLMSLNHLNLSNNKLTGKIPSSTQLQSFDASS 591
               +L  L++SNN L        +LQ    S 
Sbjct: 429 -IPQTLEVLDVSNNNLDSFSLFLPRLQELYISR 460

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 87.1 bits (216), Expect = 4e-18
 Identities = 55/343 (16%), Positives = 113/343 (32%), Gaps = 33/343 (9%)

Query: 269 ISSNLVYLDLSNNSFS----GSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQN 324
           +++ +  LDLS N  +    G +            +L  L LK + +     D + S  +
Sbjct: 24  LTAAMKSLDLSFNKITYIGHGDLRAC--------ANLQVLILKSSRINTIEGDAFYSLGS 75

Query: 325 LEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSG-TIPVSLKNCTALESLDVGENEF 383
           LE L+LS+N  +    +  G L+SL +L L  N      +     N T L++L +G  E 
Sbjct: 76  LEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVET 135

Query: 384 VGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNI 443
              I        + +  L +++ +        L  +  +  L L  +     +    + +
Sbjct: 136 FSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADIL 195

Query: 444 TG------------MVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNL 491
           +                 +             L     +    S     + + Y   L+ 
Sbjct: 196 SSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSE 255

Query: 492 VKETDVSRNNLTKSIPLEMTNLKAT--------QSLNFSHNSFTGRIPESIGAMRSLESI 543
           V+  D + N L    P E   +           + L+         +      +  ++ I
Sbjct: 256 VEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRI 315

Query: 544 DFSVNQLSGEIPQSMSNLMSLNHLNLSNNKLTGKIPSSTQLQS 586
               +++         +L SL  L+LS N +  +   ++  + 
Sbjct: 316 TVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKG 358

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 60.9 bits (148), Expect = 7e-10
 Identities = 41/319 (12%), Positives = 91/319 (28%), Gaps = 54/319 (16%)

Query: 276 LDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKF 335
            D  + SF+ S+   L        ++  L L  N +         +  NL++L L +++ 
Sbjct: 10  CDGRSRSFT-SIPSGL------TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRI 62

Query: 336 TGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERF 395
                ++  SL SL  L L  N LS          ++L+ L++  N +     T      
Sbjct: 63  NTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNL 122

Query: 396 SRMVVLILRSNNFHGPLPTR-LCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTR 454
           + +  L + +      +       L  L  L++   +L     + + +I  +        
Sbjct: 123 TNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDI-------- 174

Query: 455 SSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLK 514
                                                     +  +     + +    L 
Sbjct: 175 --------------------------------------HHLTLHLSESAFLLEIFADILS 196

Query: 515 ATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLSNNKL 574
           + + L     +        +        +     + S    +S + L+ L    L  +++
Sbjct: 197 SVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEV 256

Query: 575 TGKIPSSTQLQSFDASSFT 593
                +   L  F+ S   
Sbjct: 257 EFDDCTLNGLGDFNPSESD 275

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 52.4 bits (126), Expect = 4e-07
 Identities = 32/167 (19%), Positives = 60/167 (35%), Gaps = 29/167 (17%)

Query: 3   HLEYLSLRNNKLQG-TIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRG 61
            L+ L L  N L+      E L  L +++ LD+S NT     +P S      ++ +NL  
Sbjct: 362 SLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTF--HPMPDSCQWPEKMRFLNLSS 419

Query: 62  VHLSQEISEILNIFSGCVSIELESLDLRS---SSISGHLT---------------DQLGQ 103
             +         +   C+   LE LD+ +    S S  L                     
Sbjct: 420 TGIR--------VVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPDASL 471

Query: 104 FKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHF 150
           F  L  + ++ N +          L++L+ + ++ N  + +   I +
Sbjct: 472 FPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY 518

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  117 bits (296), Expect = 6e-29
 Identities = 78/381 (20%), Positives = 143/381 (37%), Gaps = 46/381 (12%)

Query: 7   LSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQ 66
           L+     +          +L    R  L            +   L ++  + + G  ++ 
Sbjct: 5   LATLPAPIN---QIFPDADLAEGIRAVLQKA---SVTDVVTQEELESITKLVVAGEKVA- 57

Query: 67  EISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLG 126
            I  I  +        LE L+L  + I+      L     L NL +  N I      +L 
Sbjct: 58  SIQGIEYL------TNLEYLNLNGNQITD--ISPLSNLVKLTNLYIGTNKIT--DISALQ 107

Query: 127 HLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPF----QLVA 182
           +L+NLR L +  + ++        +NLTK+    +G N    +     + P      L  
Sbjct: 108 NLTNLRELYLNEDNISDI---SPLANLTKMYSLNLGANHNLSD-----LSPLSNMTGLNY 159

Query: 183 LGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQ 242
           L      V    P  + +   L  L+L  + + D+ P+  L     L +    +NQ    
Sbjct: 160 LTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISPLASLT---SLHYFTAYVNQITD- 213

Query: 243 ITDLTKVTQLLFLSVHSNNMSGPLPLIS-SNLVYLDLSNNSFSGSVSHYLCYRINEPKSL 301
           IT +  +T+L  L + +N ++   PL + S L +L++  N  S   +      + +   L
Sbjct: 214 ITPVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINA------VKDLTKL 267

Query: 302 IGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSG 361
             L +  N +        +S   L  L L+NN+   +    +G LT+L  L L +N ++ 
Sbjct: 268 KMLNVGSNQISDISVLNNLS--QLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD 325

Query: 362 TIPVSLKNCTALESLDVGENE 382
             P  L + + ++S D     
Sbjct: 326 IRP--LASLSKMDSADFANQV 344

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  116 bits (293), Expect = 1e-28
 Identities = 83/364 (22%), Positives = 151/364 (41%), Gaps = 52/364 (14%)

Query: 70  EILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLS 129
            I  IF      E     L+ +S++  +T    + +++  L +A   +     Q + +L+
Sbjct: 11  PINQIFPDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVASI--QGIEYLT 66

Query: 130 NLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQLVALGFHNCY 189
           NL  L +  N++         SNL KL+   +G NK+T       I   Q          
Sbjct: 67  NLEYLNLNGNQITDI---SPLSNLVKLTNLYIGTNKITD------ISALQ---------- 107

Query: 190 VGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQITDLTKV 249
                     +  +L+ L L    +SD+ P+  L    ++  L+LG N     ++ L+ +
Sbjct: 108 ----------NLTNLRELYLNEDNISDISPLANLT---KMYSLNLGANHNLSDLSPLSNM 154

Query: 250 TQLLFLSVHSNNMSGPLPLIS-SNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKD 308
           T L +L+V  + +    P+ + ++L  L L+ N             +    SL       
Sbjct: 155 TGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISP------LASLTSLHYFTAYV 208

Query: 309 NSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLK 368
           N +    P   M+   L  L++ NNK T    + L +L+ L WL +G N++S     ++K
Sbjct: 209 NQITDITPVANMT--RLNSLKIGNNKITD--LSPLANLSQLTWLEIGTNQISD--INAVK 262

Query: 369 NCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLA 428
           + T L+ L+VG N+ + +I        S++  L L +N         +  L  L  L L+
Sbjct: 263 DLTKLKMLNVGSNQ-ISDISVLNN--LSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLS 319

Query: 429 DNNL 432
            N++
Sbjct: 320 QNHI 323

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  112 bits (283), Expect = 3e-27
 Identities = 80/470 (17%), Positives = 155/470 (32%), Gaps = 126/470 (26%)

Query: 107 LDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKL 166
              L      I    P     L+      +    +      +    L  ++   V G K+
Sbjct: 2   AATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDV---VTQEELESITKLVVAGEKV 56

Query: 167 TLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSA 226
                   I   + +                     +L+YLNL  + ++D+ P+  L   
Sbjct: 57  AS------IQGIEYL--------------------TNLEYLNLNGNQITDISPLSNLV-- 88

Query: 227 FQLKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNNMSGPLPLIS-SNLVYLDLSNNSFSG 285
            +L  L +G N+    I+ L  +T L  L ++ +N+S   PL + + +  L+L  N    
Sbjct: 89  -KLTNLYIGTNKIT-DISALQNLTNLRELYLNEDNISDISPLANLTKMYSLNLGANHN-- 144

Query: 286 SVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGS 345
                    +++   L  +                    L  L ++ +K        + +
Sbjct: 145 ---------LSDLSPLSNMT------------------GLNYLTVTESKVKD--VTPIAN 175

Query: 346 LTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRS 405
           LT L  L L  N++    P  L + T+L       N+     P       +R+  L + +
Sbjct: 176 LTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITPV---ANMTRLNSLKIGN 230

Query: 406 NNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLD 465
           N      P  L +L+ L  L++  N         I++I                      
Sbjct: 231 NKITDLSP--LANLSQLTWLEIGTNQ--------ISDI---------------------- 258

Query: 466 GDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNS 525
                           A++    L  +K  +V  N ++    L   NL    SL  ++N 
Sbjct: 259 ---------------NAVKD---LTKLKMLNVGSNQISDISVLN--NLSQLNSLFLNNNQ 298

Query: 526 FTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLSNNKLT 575
                 E IG + +L ++  S N ++   P  +++L  ++  + +N  + 
Sbjct: 299 LGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 98.4 bits (246), Expect = 2e-22
 Identities = 74/337 (21%), Positives = 138/337 (40%), Gaps = 56/337 (16%)

Query: 1   FIHLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLR 60
             +LEYL+L  N++    D   L NL  ++ L +  N   +     ++ +L NL+ + L 
Sbjct: 65  LTNLEYLNLNGNQIT---DISPLSNLVKLTNLYIGTN---KITDISALQNLTNLRELYLN 118

Query: 61  GVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGP 120
             ++S +IS + N+       ++ SL+L ++     L+  L     L+ L +  + +   
Sbjct: 119 EDNIS-DISPLANL------TKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDV 170

Query: 121 IPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQL 180
            P  + +L++L  L +  N++         ++LT L +F    N++T       I P   
Sbjct: 171 TP--IANLTDLYSLSLNYNQIE---DISPLASLTSLHYFTAYVNQIT------DITP--- 216

Query: 181 VALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFH 240
                            + +   L  L + N+ ++DL P+  L     L +L++G NQ  
Sbjct: 217 -----------------VANMTRLNSLKIGNNKITDLSPLANLSQ---LTWLEIGTNQIS 256

Query: 241 GQITDLTKVTQLLFLSVHSNNMSGPLPLIS-SNLVYLDLSNNSFSGSVSHYLCYRINEPK 299
             I  +  +T+L  L+V SN +S    L + S L  L L+NN         +        
Sbjct: 257 D-INAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGL----T 311

Query: 300 SLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFT 336
           +L  L L  N +    P    S   ++  + +N    
Sbjct: 312 NLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 80.7 bits (200), Expect = 1e-16
 Identities = 64/391 (16%), Positives = 123/391 (31%), Gaps = 121/391 (30%)

Query: 204 LQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNNMS 263
              L  L + ++ +FP   L    +     L        +    ++  +  L V    ++
Sbjct: 2   AATLATLPAPINQIFPDADLA---EGIRAVLQKASVTD-VVTQEELESITKLVVAGEKVA 57

Query: 264 GPLPLIS-SNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSY 322
               +   +NL YL+L+ N            +I +   L  L                  
Sbjct: 58  SIQGIEYLTNLEYLNLNGN------------QITDISPLSNLV----------------- 88

Query: 323 QNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENE 382
             L  L +  NK T    ++L +LT+L  L L ++ +S   P  L N T + SL++G N 
Sbjct: 89  -KLTNLYIGTNKITD--ISALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANH 143

Query: 383 FVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINN 442
            + ++                            L ++  L  L + ++ +     K +  
Sbjct: 144 NLSDLSP--------------------------LSNMTGLNYLTVTESKV-----KDVTP 172

Query: 443 ITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNL 502
           I  +                       L                  L+L      + N +
Sbjct: 173 IANLTD---------------------LYS----------------LSL------NYNQI 189

Query: 503 TKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLM 562
               PL   +L +        N  T      +  M  L S+    N+++   P  ++NL 
Sbjct: 190 EDISPLA--SLTSLHYFTAYVNQITD--ITPVANMTRLNSLKIGNNKITDLSP--LANLS 243

Query: 563 SLNHLNLSNNKLTG--KIPSSTQLQSFDASS 591
            L  L +  N+++    +   T+L+  +  S
Sbjct: 244 QLTWLEIGTNQISDINAVKDLTKLKMLNVGS 274

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  111 bits (280), Expect = 1e-26
 Identities = 62/361 (17%), Positives = 131/361 (36%), Gaps = 37/361 (10%)

Query: 57  INLRGVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNS 116
                VH+  +  ++   F        + +  ++S++       L  F+ ++ L+L +  
Sbjct: 21  CVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ 80

Query: 117 IVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIP 176
           I      +  +   ++ L +  N +   L    F N+  L+   +  N L+       +P
Sbjct: 81  IEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSS------LP 133

Query: 177 PF------QLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLK 230
                   +L  L   N  +         +   LQ L L ++ ++ +  +  + S   L 
Sbjct: 134 RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-DLSLIPS---LF 189

Query: 231 FLDLGLNQFHGQITDLTKVTQLLFLSVHSNNMSGPLPLISSNLVYLDLSNNSFS--GSVS 288
             ++  N     ++ L     +  L    N+++     ++  L  L L +N+ +    + 
Sbjct: 190 HANVSYN----LLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLL 245

Query: 289 HYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTS 348
           +Y          L+ + L  N L+  +   ++  Q LE L +SNN+    L      + +
Sbjct: 246 NY--------PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPT 296

Query: 349 LIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNF 408
           L  L L  N L   +  +      LE+L +  N    +I T        +  L L  N++
Sbjct: 297 LKVLDLSHNHLL-HVERNQPQFDRLENLYLDHN----SIVTLKLSTHHTLKNLTLSHNDW 351

Query: 409 H 409
            
Sbjct: 352 D 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 95.1 bits (237), Expect = 3e-21
 Identities = 58/388 (14%), Positives = 135/388 (34%), Gaps = 83/388 (21%)

Query: 3   HLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRI----PRSMASLCNLKSIN 58
           + + ++ +N+ ++  + +  L +   +  L+L+       +I      + A    ++ + 
Sbjct: 46  NQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDL-----QIEEIDTYAFAYAHTIQKLY 99

Query: 59  LRGVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIV 118
           +    +   +    ++F       L  L L  + +S            L  L ++NN++ 
Sbjct: 100 MGFNAIR-YLPP--HVFQNVPL--LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE 154

Query: 119 GPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPF 178
                +    ++L+ LQ+ +N+    L+ +  S +  L    V  N L+           
Sbjct: 155 RIEDDTFQATTSLQNLQLSSNR----LTHVDLSLIPSLFHANVSYNLLST---------- 200

Query: 179 QLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQ 238
                              L     ++ L+  ++ ++ +     ++    L  L L  N 
Sbjct: 201 -------------------LAIPIAVEELDASHNSINVVRGPVNVE----LTILKLQHN- 236

Query: 239 FHGQITDLTKVTQLLFLSVHSNNMSGPLPLISSNLVYLDLSNNSFSGSVSHYLCYRINEP 298
               +TD   +                       LV +DLS N     + ++   ++   
Sbjct: 237 ---NLTDTAWLLNY------------------PGLVEVDLSYNELE-KIMYHPFVKM--- 271

Query: 299 KSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNR 358
           + L  L + +N L   +         L++L+LS+N     +  +      L  L L  N 
Sbjct: 272 QRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNS 329

Query: 359 LSGTIPVSLKNCTALESLDVGENEFVGN 386
           +  T+ +S      L++L +  N++  N
Sbjct: 330 IV-TLKLS--THHTLKNLTLSHNDWDCN 354

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 84.3 bits (209), Expect = 1e-17
 Identities = 62/346 (17%), Positives = 120/346 (34%), Gaps = 41/346 (11%)

Query: 244 TDLTKVTQLLFLSVHSNNMS-----GPLPLISSNLVYLDLSNNSFSGSVSHYLCYRINEP 298
            D       +F  VH +  +     G   +  +N   +   N++     +  L    +  
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALL----DSF 68

Query: 299 KSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNR 358
           + +  L L D  ++      +     ++ L +  N      P+   ++  L  L+L +N 
Sbjct: 69  RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND 128

Query: 359 LSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCD 418
           LS        N   L +L +  N     I   T +  + +  L L SN     +   L  
Sbjct: 129 LSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTH-VDLSL-- 184

Query: 419 LAFLQILDLADNNLFGTIPKCI---------NNITGMVAANSFTRSSQQYLPLPLDGDVI 469
           +  L   +++ N L  T+   I         N+I  +V            L L       
Sbjct: 185 IPSLFHANVSYNLL-STLAIPIAVEELDASHNSIN-VVRGPVN--VELTILKL---QHNN 237

Query: 470 LTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGR 529
           LT+ A +++             + E D+S N L K +      ++  + L  S+N     
Sbjct: 238 LTDTAWLLN----------YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-A 286

Query: 530 IPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLSNNKLT 575
           +      + +L+ +D S N L   + ++      L +L L +N + 
Sbjct: 287 LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV 331

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 62.8 bits (153), Expect = 1e-10
 Identities = 37/201 (18%), Positives = 65/201 (32%), Gaps = 24/201 (11%)

Query: 2   IHLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRG 61
           I +E L   +N +   +       LT    L L  N      +    A L N     L  
Sbjct: 205 IAVEELDASHNSIN-VVRGPVNVELTI---LKLQHN-----NL-TDTAWLLNYP--GLVE 252

Query: 62  VHLSQ-EISEI-LNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVG 119
           V LS  E+ +I  + F       LE L + ++ +   L         L  LDL++N ++ 
Sbjct: 253 VDLSYNELEKIMYHPFVKMQR--LERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLLH 309

Query: 120 PIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQ 179
            + ++      L  L + +N     +  +  S    L    +  N               
Sbjct: 310 -VERNQPQFDRLENLYLDHNS----IVTLKLSTHHTLKNLTLSHNDWDCNSLRALFRNVA 364

Query: 180 LVALGFHN--CYVGSRFPQWL 198
             A+   +  C +  +    L
Sbjct: 365 RPAVDDADQHCKIDYQLEHGL 385

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 55.4 bits (134), Expect = 3e-08
 Identities = 36/158 (22%), Positives = 65/158 (41%), Gaps = 16/158 (10%)

Query: 1   FIHLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLR 60
            + L  L L++N L    D+  L N   +  +DLS N     +I         ++   L 
Sbjct: 225 NVELTILKLQHNNL---TDTAWLLNYPGLVEVDLSYN--ELEKIMYH--PFVKMQ--RLE 275

Query: 61  GVHLSQ-EISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVG 119
            +++S   +  +        +  L+ LDL  + +  H+     QF  L+NL L +NSIV 
Sbjct: 276 RLYISNNRLVALNLYGQPIPT--LKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV- 331

Query: 120 PIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLS 157
            +   L     L+ L + +N  +       F N+ + +
Sbjct: 332 TLK--LSTHHTLKNLTLSHNDWDCNSLRALFRNVARPA 367

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 55.4 bits (134), Expect = 3e-08
 Identities = 26/169 (15%), Positives = 55/169 (32%), Gaps = 24/169 (14%)

Query: 1   FIHLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLR 60
              L + ++  N L        L    ++  LD S N      +         L  + L+
Sbjct: 185 IPSLFHANVSYNLLS------TLAIPIAVEELDASHN--SINVVRGP--VNVELTILKLQ 234

Query: 61  GVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGP 120
             +L+                 L  +DL  + +   +     + + L+ L ++NN +V  
Sbjct: 235 HNNLTD-----TAWLLNYPG--LVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA- 286

Query: 121 IPQSLGHLSNLRVLQIYNNKLNGTLSEIH--FSNLTKLSWFRVGGNKLT 167
           +      +  L+VL + +N     L  +        +L    +  N + 
Sbjct: 287 LNLYGQPIPTLKVLDLSHNH----LLHVERNQPQFDRLENLYLDHNSIV 331

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 42.0 bits (99), Expect = 5e-04
 Identities = 19/89 (21%), Positives = 32/89 (35%), Gaps = 5/89 (5%)

Query: 496 DVSRNNLTKSIPLEM-TNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEI 554
           +++   +   I           Q L    N+     P     +  L  +    N LS  +
Sbjct: 75  NLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SL 132

Query: 555 PQSM-SNLMSLNHLNLSNNKLTGKIPSST 582
           P+ +  N   L  L++SNN L  +I   T
Sbjct: 133 PRGIFHNTPKLTTLSMSNNNLE-RIEDDT 160

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  109 bits (273), Expect = 2e-25
 Identities = 72/494 (14%), Positives = 140/494 (28%), Gaps = 84/494 (17%)

Query: 82  ELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKL 141
             +   +  SS+   L        N+  LDL+ N +       L   + L +L + +N L
Sbjct: 11  RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL 70

Query: 142 NGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQ 201
             TL      +L+ L    +  N +                               L   
Sbjct: 71  YETLD---LESLSTLRTLDLNNNYVQE-----------------------------LLVG 98

Query: 202 KHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNN 261
             ++ L+  N+ +S +      +     K + L  N+       +T +  L         
Sbjct: 99  PSIETLHAANNNISRV-SCSRGQG---KKNIYLANNK-------ITMLRDLDEGCR---- 143

Query: 262 MSGPLPLISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMS 321
                    S + YLDL  N         L        +L  L L+ N +  ++    + 
Sbjct: 144 ---------SRVQYLDLKLNEIDTVNFAEL---AASSDTLEHLNLQYNFIY-DVKG-QVV 189

Query: 322 YQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGEN 381
           +  L+ L+LS+NK    +     S   + W+ L  N+L   I  +L+    LE  D+  N
Sbjct: 190 FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGN 247

Query: 382 EFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCIN 441
            F          +  R+  +  ++           C +    +              C  
Sbjct: 248 GFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTV--PTLGHYGAY--------CCE 297

Query: 442 NITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNN 501
           ++    A        +++  L   G      +    +              +E D  +  
Sbjct: 298 DLPAPFADRLIALKRKEHALLSGQGSETERLECEREN----------QARQREIDALKEQ 347

Query: 502 LTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNL 561
               I       +A  +L     +   ++     A   L+           E+  +    
Sbjct: 348 YRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQ-IELQHATEEQ 406

Query: 562 MSLNHLNLSNNKLT 575
             L  L     +  
Sbjct: 407 SPLQLLRAIVKRYE 420

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 96.8 bits (241), Expect = 3e-21
 Identities = 62/436 (14%), Positives = 140/436 (32%), Gaps = 32/436 (7%)

Query: 3   HLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGV 62
           +++ L L  N L   I +  L   T +  L+LS N      +      L +L    LR +
Sbjct: 35  NVKELDLSGNPLS-QISAADLAPFTKLELLNLSSN-----VL-YETLDLESLS--TLRTL 85

Query: 63  HLSQ-EISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPI 121
            L+   + E+L   S      +E+L   +++IS        + +   N+ LANN I    
Sbjct: 86  DLNNNYVQELLVGPS------IETLHAANNNIS---RVSCSRGQGKKNIYLANNKITMLR 136

Query: 122 PQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQLV 181
               G  S ++ L +  N+++        ++   L    +  N +        +   +L 
Sbjct: 137 DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY--DVKGQVVFAKLK 194

Query: 182 ALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDL-FPIRFLKSAFQLKFLDLGLNQFH 240
            L   +  + +       S   + +++L N+ +  +   +RF ++   L+  DL  N FH
Sbjct: 195 TLDLSSNKL-AFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQN---LEHFDLRGNGFH 250

Query: 241 GQITD--LTKVTQLLFLSVHSN-NMSGPLPLISSNLVYLDLSNNSFSGSVSHYLCYRINE 297
                   +K  ++  ++  +   ++G      +                + +    I  
Sbjct: 251 CGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIAL 310

Query: 298 PKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKN 357
            +    L     S    +     +      ++    ++   +        + I L   K 
Sbjct: 311 KRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKK 370

Query: 358 RLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNF-HGPLPTRL 416
            L   +    +    L+                  E  S + +L      +    +  + 
Sbjct: 371 ALDEQVSNGRRAHAELDGTLQQAVG--QIELQHATEEQSPLQLLRAIVKRYEEMYVEQQS 428

Query: 417 CDLAFLQILDLADNNL 432
                ++  D+  +  
Sbjct: 429 VQNNAIRDWDMYQHKE 444

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 83.4 bits (206), Expect = 5e-17
 Identities = 46/338 (13%), Positives = 97/338 (28%), Gaps = 64/338 (18%)

Query: 266 LPLISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNL 325
           +    +      ++++S   +++           ++  L L  N L          +  L
Sbjct: 5   IKQNGNRYKIEKVTDSSLKQALASLR----QSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 326 EILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVG 385
           E+L LS+N         L SL++L  L L  N +       L    ++E+L    N    
Sbjct: 61  ELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANN---- 109

Query: 386 NIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITG 445
           NI   +  R      + L +N             + +Q LDL  N +             
Sbjct: 110 NISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEI------------- 156

Query: 446 MVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKS 505
                                          V+  E        + ++  ++  N +   
Sbjct: 157 -----------------------------DTVNFAELAAS---SDTLEHLNLQYNFIY-D 183

Query: 506 IPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLN 565
           +  +       ++L+ S N     +     +   +  I    N+L   I +++    +L 
Sbjct: 184 VKGQ-VVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLE 240

Query: 566 HLNLSNNKLTGKIPSSTQLQSFDASSFTGNDLCGAPLP 603
           H +L  N            ++    +     +      
Sbjct: 241 HFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQ 278

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 79.1 bits (195), Expect = 1e-15
 Identities = 61/402 (15%), Positives = 115/402 (28%), Gaps = 68/402 (16%)

Query: 204 LQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHG-QITDLTKVTQLLFLSVHSNNM 262
            +   + +S +         +SA+ +K LDL  N        DL   T+L  L++ SN +
Sbjct: 12  YKIEKVTDSSLKQA-LASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL 70

Query: 263 SGPLPLIS-SNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMS 321
              L L S S L  LDL+NN             +    S+  L   +N++   +      
Sbjct: 71  YETLDLESLSTLRTLDLNNNYVQ---------ELLVGPSIETLHAANNNIS-RVSCSRG- 119

Query: 322 YQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSG-TIPVSLKNCTALESLDVGE 380
            Q  + + L+NNK T       G  + + +L L  N +          +   LE L++  
Sbjct: 120 -QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178

Query: 381 NEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCI 440
           N    ++       F+++  L L SN     +       A +  + L +N L   I K +
Sbjct: 179 NFIY-DVKGQVV--FAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKL-VLIEKAL 233

Query: 441 NNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRN 500
                                                              ++  D+  N
Sbjct: 234 RF----------------------------------------------SQNLEHFDLRGN 247

Query: 501 NLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSN 560
                  L     K  +    +  +      ++           +               
Sbjct: 248 GF-HCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADR 306

Query: 561 LMSLNHLNLSNNKLTGKIPSSTQLQSFDASSFTGNDLCGAPL 602
           L++L     +     G      + +  + +     D      
Sbjct: 307 LIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQY 348

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 78.0 bits (192), Expect = 3e-15
 Identities = 46/283 (16%), Positives = 92/283 (32%), Gaps = 44/283 (15%)

Query: 315 IPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALE 374
           I +   +    +I +++++     L +   S  ++  L L  N LS      L   T LE
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 375 SLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFG 434
            L++  N              S +  L L +N         L     ++ L  A+NN+  
Sbjct: 62  LLNLSSNVLY-ETLDLES--LSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNI-- 111

Query: 435 TIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVK- 493
                       V+ +           + L  + I             +   +     + 
Sbjct: 112 ----------SRVSCSRGQGKKN----IYLANNKI-----------TMLRDLDEGCRSRV 146

Query: 494 -ETDVSRNNLTK-SIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLS 551
              D+  N +   +      +    + LN  +N     +   +     L+++D S N+L+
Sbjct: 147 QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVV-FAKLKTLDLSSNKLA 204

Query: 552 GEIPQSMSNLMSLNHLNLSNNKLT---GKIPSSTQLQSFDASS 591
             +     +   +  ++L NNKL      +  S  L+ FD   
Sbjct: 205 -FMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRG 246

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 74.9 bits (184), Expect = 3e-14
 Identities = 56/349 (16%), Positives = 112/349 (32%), Gaps = 25/349 (7%)

Query: 1   FIHLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLR 60
               + + L NNK+   +     G  + +  LDL LN           AS   L+ +NL+
Sbjct: 119 GQGKKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177

Query: 61  GVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGP 120
              +        ++    V  +L++LDL S+ ++  +  +      +  + L NN +V  
Sbjct: 178 YNFIY-------DVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVL- 228

Query: 121 IPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNK-LTLEVRHDWIPPFQ 179
           I ++L    NL    +  N  +       FS   ++        K LT +   +   P  
Sbjct: 229 IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTL 288

Query: 180 LVALGFHNCYVGSRFPQWLHSQK--HLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLN 237
                +    + + F   L + K      L+   S    L   R  ++  + + +D    
Sbjct: 289 GHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQA--RQREIDALKE 346

Query: 238 QFHGQITDL-TKVTQLLFLSVHSNNMSGPLPLISSNLVYLDLSNNSFSGSVS-HYLCYRI 295
           Q+   I  +  +    + L      +   +         LD +     G +   +     
Sbjct: 347 QYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQ 406

Query: 296 NEPKSLIGLKLKDNSLQGEIP--------DCWMSYQNLEILELSNNKFT 336
           +  + L  +  +   +  E          D  M       L   N +  
Sbjct: 407 SPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLK 455

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 49.8 bits (119), Expect = 2e-06
 Identities = 16/82 (19%), Positives = 30/82 (36%), Gaps = 1/82 (1%)

Query: 505 SIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSL 564
           +I     N    +    + +S    +     +  +++ +D S N LS      ++    L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 565 NHLNLSNNKLTGKIPSSTQLQS 586
             LNLS+N L         L +
Sbjct: 61  ELLNLSSNVLYE-TLDLESLST 81

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  107 bits (268), Expect = 2e-24
 Identities = 67/374 (17%), Positives = 136/374 (36%), Gaps = 34/374 (9%)

Query: 43  RIPRSMASLCNLKSIN-LRGVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQL 101
           R P       NL+       VH+  +  ++   F        + +  ++S++       L
Sbjct: 12  RQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALL 71

Query: 102 GQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRV 161
             F+ ++ L+L +  I      +  +   ++ L +  N +   L    F N+  L+   +
Sbjct: 72  DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVL 130

Query: 162 GGNKLTLEVRHDWIPPF------QLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMS 215
             N L+       +P        +L  L   N  +         +   LQ L L ++ ++
Sbjct: 131 ERNDLSS------LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT 184

Query: 216 DLFPIRFLKSAFQLKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNNMSGPLPLISSNLVY 275
            +  +  + S   L   ++  N     ++ L     +  L    N+++     ++  L  
Sbjct: 185 HV-DLSLIPS---LFHANVSYN----LLSTLAIPIAVEELDASHNSINVVRGPVNVELTI 236

Query: 276 LDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKF 335
           L L +N+ +   +  L Y       L+ + L  N L+  +   ++  Q LE L +SNN+ 
Sbjct: 237 LKLQHNNLT-DTAWLLNY-----PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL 290

Query: 336 TGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERF 395
              L      + +L  L L  N L   +  +      LE+L +  N    +I T      
Sbjct: 291 V-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHN----SIVTLKLSTH 344

Query: 396 SRMVVLILRSNNFH 409
             +  L L  N++ 
Sbjct: 345 HTLKNLTLSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 94.2 bits (234), Expect = 3e-20
 Identities = 85/604 (14%), Positives = 190/604 (31%), Gaps = 109/604 (18%)

Query: 3   HLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRI----PRSMASLCNLKSIN 58
           + + ++ +N+ ++  + +  L +   +  L+L+       +I      + A    ++ + 
Sbjct: 52  NQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDL-----QIEEIDTYAFAYAHTIQKLY 105

Query: 59  LRGVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIV 118
           +    +   +    ++F       L  L L  + +S            L  L ++NN++ 
Sbjct: 106 MGFNAIR-YLPP--HVFQNVPL--LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE 160

Query: 119 GPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPF 178
                +    ++L+ LQ+ +N+    L+ +  S +  L    V  N L+           
Sbjct: 161 RIEDDTFQATTSLQNLQLSSNR----LTHVDLSLIPSLFHANVSYNLLST---------- 206

Query: 179 QLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQ 238
                              L     ++ L+  ++ ++ +     ++    L  L L  N 
Sbjct: 207 -------------------LAIPIAVEELDASHNSINVVRGPVNVE----LTILKLQHN- 242

Query: 239 FHGQITDLTKVTQLLFLSVHSNNMSGPLPLISSNLVYLDLSNNSFSGSVSHYLCYRINEP 298
               +TD   +                       LV +DLS N     + ++   ++   
Sbjct: 243 ---NLTDTAWLLNY------------------PGLVEVDLSYNELE-KIMYHPFVKM--- 277

Query: 299 KSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNR 358
           + L  L + +N L   +         L++L+LS+N     +  +      L  L L  N 
Sbjct: 278 QRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNS 335

Query: 359 LSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHG-PLPTRLC 417
           +  T+ +S      L++L +  N++  N         +R  V     +      L   LC
Sbjct: 336 IV-TLKLS--THHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEHGLC 392

Query: 418 ------DLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLP-------- 463
                       +  +A  ++   + +     +     NS    S               
Sbjct: 393 CKESDKPYLDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNE 452

Query: 464 -LDGDVILTEKASVVSEGEAIEYDEILNLVK---ETDVSRNNLTK------SIPLEMTNL 513
            L+ +V            E I+ +++L  +    +T++ R  L K      S  L     
Sbjct: 453 QLEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFT 512

Query: 514 KATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQ-SMSNLMSLNHLNLSNN 572
              +   F       R  E+    +  E ++     L  ++              +L   
Sbjct: 513 HLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQ 572

Query: 573 KLTG 576
           K+  
Sbjct: 573 KVKQ 576

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 80.4 bits (198), Expect = 6e-16
 Identities = 53/330 (16%), Positives = 111/330 (33%), Gaps = 35/330 (10%)

Query: 255 LSVHSNNMSGPLPLIS-SNLVYLDLSNNSFS----GSVSHYLCYRINEPKSLIGLKLKDN 309
           + + + ++      I+ +N   +   N++        +  +        + +  L L D 
Sbjct: 34  IDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSF--------RQVELLNLNDL 85

Query: 310 SLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKN 369
            ++      +     ++ L +  N      P+   ++  L  L+L +N LS        N
Sbjct: 86  QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHN 145

Query: 370 CTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLAD 429
              L +L +  N     I   T +  + +  L L SN     +   L  +  L   +++ 
Sbjct: 146 TPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTH-VDLSL--IPSLFHANVSY 201

Query: 430 NNLFGTIPKCINNITGMVAANSFTRSSQQYLP----LPLDGDVILTEKASVVSEGEAIEY 485
           N L  T+   I       + NS              L L  + +      +         
Sbjct: 202 NLL-STLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLN-------- 252

Query: 486 DEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDF 545
                 + E D+S N L K +      ++  + L  S+N     +      + +L+ +D 
Sbjct: 253 ---YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDL 308

Query: 546 SVNQLSGEIPQSMSNLMSLNHLNLSNNKLT 575
           S N L   + ++      L +L L +N + 
Sbjct: 309 SHNHLL-HVERNQPQFDRLENLYLDHNSIV 337

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 70.7 bits (173), Expect = 8e-13
 Identities = 49/307 (15%), Positives = 98/307 (31%), Gaps = 38/307 (12%)

Query: 269 ISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEIL 328
           +  + V+ D+  +  +  V            +   +  K+++++        S++ +E+L
Sbjct: 23  LQYDCVFYDVHIDMQTQDVYFGF--EDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELL 80

Query: 329 ELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIP 388
            L++ +       +     ++  L +G N +    P   +N   L  L +  N+   ++P
Sbjct: 81  NLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLP 139

Query: 389 TWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVA 448
                   ++  L + +NN              LQ L L+ N L              V 
Sbjct: 140 RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL------------THVD 187

Query: 449 ANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPL 508
            +         +                      +    I   V+E D S N++      
Sbjct: 188 LSLIPSLFHANV------------------SYNLLSTLAIPIAVEELDASHNSINVVRGP 229

Query: 509 EMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLN 568
               L     L   HN+ T      +     L  +D S N+L   +      +  L  L 
Sbjct: 230 VNVEL---TILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLY 284

Query: 569 LSNNKLT 575
           +SNN+L 
Sbjct: 285 ISNNRLV 291

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 61.9 bits (150), Expect = 4e-10
 Identities = 44/274 (16%), Positives = 83/274 (30%), Gaps = 32/274 (11%)

Query: 2   IHLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRG 61
           I +E L   +N +   +       LT    L L  N      +    A L N     L  
Sbjct: 211 IAVEELDASHNSIN-VVRGPVNVELTI---LKLQHN-----NL-TDTAWLLNYP--GLVE 258

Query: 62  VHLSQ-EISEI-LNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVG 119
           V LS  E+ +I  + F       LE L + ++ +   L         L  LDL++N ++ 
Sbjct: 259 VDLSYNELEKIMYHPFVKMQR--LERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLLH 315

Query: 120 PIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQ 179
            + ++      L  L + +N     +  +  S    L    +  N               
Sbjct: 316 -VERNQPQFDRLENLYLDHNS----IVTLKLSTHHTLKNLTLSHNDWDCNSLRALFRNVA 370

Query: 180 LVALGF--HNCYVGSRFPQWL--------HSQKHLQYLNLLNSGMSDLFPIRFLKSAFQL 229
             A+     +C +  +    L        +  + LQY+ L +             +   +
Sbjct: 371 RPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIALTSVVEKVQRAQGRCSATDTI 430

Query: 230 KFLDLGLNQFHGQITDLTKVTQLLFLSVHSNNMS 263
             +    +    Q     +  + L   V+     
Sbjct: 431 NSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAE 464

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 54.2 bits (130), Expect = 1e-07
 Identities = 26/169 (15%), Positives = 55/169 (32%), Gaps = 24/169 (14%)

Query: 1   FIHLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLR 60
              L + ++  N L        L    ++  LD S N      +         L  + L+
Sbjct: 191 IPSLFHANVSYNLLS------TLAIPIAVEELDASHN--SINVVRGP--VNVELTILKLQ 240

Query: 61  GVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGP 120
             +L+                 L  +DL  + +   +     + + L+ L ++NN +V  
Sbjct: 241 HNNLTD-----TAWLLNYPG--LVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA- 292

Query: 121 IPQSLGHLSNLRVLQIYNNKLNGTLSEIH--FSNLTKLSWFRVGGNKLT 167
           +      +  L+VL + +N     L  +        +L    +  N + 
Sbjct: 293 LNLYGQPIPTLKVLDLSHNH----LLHVERNQPQFDRLENLYLDHNSIV 337

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  103 bits (259), Expect = 3e-24
 Identities = 44/347 (12%), Positives = 98/347 (28%), Gaps = 77/347 (22%)

Query: 250 TQLLFLSVHSNNMSGPLPLISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDN 309
           +    L    +    P   + S       ++ +          +      +    +++  
Sbjct: 12  SGRENLYFQGSTALRPYHDVLSQWQRHYNADRN--------RWHSAWRQANSNNPQIETR 63

Query: 310 SLQG--EIPDCW--MSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPV 365
           + +      D     +      LEL +     + P+    L+ L  + +    L   +P 
Sbjct: 64  TGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPD 121

Query: 366 SLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQIL 425
           +++    LE+L +  N                     LR+      LP  +  L  L+ L
Sbjct: 122 TMQQFAGLETLTLARNP--------------------LRA------LPASIASLNRLREL 155

Query: 426 DLADNNLFGTIPKCINNITGMVAANSFTR--------SSQQYLPLPLDGDVILTEKASVV 477
            +        +P+ + +                    +  + LP                
Sbjct: 156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLP---------------- 199

Query: 478 SEGEAIEYDEILNLV--KETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIG 535
                     I NL   K   +  + L+ ++   + +L   + L+    +     P   G
Sbjct: 200 --------ASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFG 250

Query: 536 AMRSLESIDFS-VNQLSGEIPQSMSNLMSLNHLNLSNNKLTGKIPSS 581
               L+ +     + L   +P  +  L  L  L+L       ++PS 
Sbjct: 251 GRAPLKRLILKDCSNLL-TLPLDIHRLTQLEKLDLRGCVNLSRLPSL 296

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 99.2 bits (248), Expect = 7e-23
 Identities = 46/390 (11%), Positives = 96/390 (24%), Gaps = 94/390 (24%)

Query: 199 HSQKHLQYLNLLNSGMSDLFPIRFLKSAF-QLKFLDLGLNQFHGQITDLTKVTQLLFLSV 257
           H   H      L         +R       Q +                         + 
Sbjct: 6   HHHHHSSGRENLY--FQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETR 63

Query: 258 HSNNMSGPLPLI----SSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQG 313
               +     L+        V L+L +                                 
Sbjct: 64  TGRALKATADLLEDATQPGRVALELRSVPLP----------------------------- 94

Query: 314 EIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTAL 373
           + PD      +L+ + +       +LP+++     L  L L +N L   +P S+ +   L
Sbjct: 95  QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRL 152

Query: 374 ESLDVGENEFVGNIPTWTG--------ERFSRMVVLILRSNNFHGPLPTRLCDLAFLQIL 425
             L +     +  +P            +    +  L L        LP  + +L  L+ L
Sbjct: 153 RELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRS-LPASIANLQNLKSL 211

Query: 426 DLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEY 485
            + ++ L   +   I+++  +                                       
Sbjct: 212 KIRNSPLS-ALGPAIHHLPKL--------------------------------------- 231

Query: 486 DEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDF 545
            E L+L            ++ P         + L     S    +P  I  +  LE +D 
Sbjct: 232 -EELDL------RGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDL 284

Query: 546 SVNQLSGEIPQSMSNLMSLNHLNLSNNKLT 575
                   +P  ++ L +   + +  +   
Sbjct: 285 RGCVNLSRLPSLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 93.1 bits (232), Expect = 9e-21
 Identities = 61/367 (16%), Positives = 106/367 (28%), Gaps = 84/367 (22%)

Query: 83  LESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLN 142
            E+L  + S+      D L Q++   N D               + +N ++       L 
Sbjct: 14  RENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHS----AWRQANSNNPQIETRTGRALK 69

Query: 143 GTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQK 202
            T   +  +         +    L                          +FP       
Sbjct: 70  ATADLLEDATQPGRVALELRSVPLP-------------------------QFPDQAFRLS 104

Query: 203 HLQYLNLLNSGMSDLFP--IRFLKSAFQLKFLDLGLNQFH---GQITDLTKVTQLLFLSV 257
           HLQ++ +  +G+ +L P  ++       L+ L L  N        I  L           
Sbjct: 105 HLQHMTIDAAGLMEL-PDTMQQFAG---LETLTLARNPLRALPASIASLN---------- 150

Query: 258 HSNNMSGPLPLISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPD 317
                          L  L +        +          P+ L                
Sbjct: 151 --------------RLRELSIRACPELTEL----------PEPLASTDA---------SG 177

Query: 318 CWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLD 377
                 NL+ L L        LP S+ +L +L  L +  + LS  +  ++ +   LE LD
Sbjct: 178 EHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELD 235

Query: 378 VGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIP 437
           +     + N P   G   + +  LIL+  +    LP  +  L  L+ LDL        +P
Sbjct: 236 LRGCTALRNYPPIFGG-RAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP 294

Query: 438 KCINNIT 444
             I  + 
Sbjct: 295 SLIAQLP 301

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 82.7 bits (205), Expect = 3e-17
 Identities = 53/352 (15%), Positives = 106/352 (30%), Gaps = 44/352 (12%)

Query: 4   LEYLSLRN-NKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGV 62
            E L  +    L+   D   L         D +             A+  N +     G 
Sbjct: 14  RENLYFQGSTALRPYHDV--LSQWQRHYNADRNRWHSAW-----RQANSNNPQIETRTGR 66

Query: 63  HLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIP 122
            L      + +           +L+LRS  +     DQ  +  +L ++ +    ++  +P
Sbjct: 67  ALKATADLLED----ATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLME-LP 120

Query: 123 QSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGG-NKLTLEVRHDWIPPFQLV 181
            ++   + L  L +  N L    + I  ++L +L    +    +LT       +P     
Sbjct: 121 DTMQQFAGLETLTLARNPLRALPASI--ASLNRLRELSIRACPELTE------LPE---- 168

Query: 182 ALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFP-IRFLKSAFQLKFLDLGLNQFH 240
                +               +LQ L L  +G+  L   I  L++   LK L +  +   
Sbjct: 169 --PLAST----DASGEHQGLVNLQSLRLEWTGIRSLPASIANLQN---LKSLKIRNSPLS 219

Query: 241 GQITDLTKVTQLLFLSVHSNNMSGPLPL-IS--SNLVYLDLSNNSFSGSVSHYLCYRINE 297
                +  + +L  L +         P      + L  L L + S   +    L   I+ 
Sbjct: 220 ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLT----LPLDIHR 275

Query: 298 PKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSL 349
              L  L L+       +P          I+ +  +       +   +  + 
Sbjct: 276 LTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVARPAE 327

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 71.9 bits (177), Expect = 9e-14
 Identities = 42/225 (18%), Positives = 78/225 (34%), Gaps = 23/225 (10%)

Query: 3   HLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGV 62
           HL+++++    L      + +     +  L L+ N      +P S+ASL  L+ +++R  
Sbjct: 105 HLQHMTIDAAGLMEL--PDTMQQFAGLETLTLARNPLRA--LPASIASLNRLRELSIRAC 160

Query: 63  HLSQEISEILNIFSGCVSIE----LESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIV 118
               E+ E L         +    L+SL L  + I   L   +   +NL +L + N+ + 
Sbjct: 161 PELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS 219

Query: 119 GPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRV-GGNKLTLEVRHDWIPP 177
             +  ++ HL  L  L +             F     L    +   + L        +P 
Sbjct: 220 A-LGPAIHHLPKLEELDLRGCTALRNYPP-IFGGRAPLKRLILKDCSNLL------TLPL 271

Query: 178 -----FQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDL 217
                 QL  L    C   SR P  +        + +     + L
Sbjct: 272 DIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQL 316

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 66.5 bits (163), Expect = 5e-12
 Identities = 53/311 (17%), Positives = 94/311 (30%), Gaps = 39/311 (12%)

Query: 8   SLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLS-Q 66
              N        +    N  +      +        +  +   L +        + L   
Sbjct: 37  RHYNADRNRWHSAWRQANSNNPQIETRTGR-----ALKATADLLEDATQPGRVALELRSV 91

Query: 67  EISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLG 126
            + +  +         L+ + + ++ +   L D + QF  L+ L LA N +   +P S+ 
Sbjct: 92  PLPQFPDQAFRLSH--LQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRA-LPASIA 147

Query: 127 HLSNLRVLQIYNNKLNGTLSE--------IHFSNLTKLSWFRVGGNKLTLEVRHDWIPP- 177
            L+ LR L I        L E             L  L   R+    +        +P  
Sbjct: 148 SLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRS------LPAS 201

Query: 178 ----FQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFP--IRFLKSAFQLKF 231
                 L +L   N  + S     +H    L+ L+L        +P           LK 
Sbjct: 202 IANLQNLKSLKIRNSPL-SALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAP---LKR 257

Query: 232 LDL-GLNQFHGQITDLTKVTQLLFLSVHSNNMSGPLP-LIS--SNLVYLDLSNNSFSGSV 287
           L L   +       D+ ++TQL  L +        LP LI+       + +  +  +   
Sbjct: 258 LILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLD 317

Query: 288 SHYLCYRINEP 298
            H    R  EP
Sbjct: 318 QHRPVARPAEP 328

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  103 bits (260), Expect = 1e-23
 Identities = 95/575 (16%), Positives = 179/575 (31%), Gaps = 133/575 (23%)

Query: 2   IHLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRG 61
             L+     ++ L   +  E   N+ S +    + +   E   P        +    LR 
Sbjct: 11  TFLQEPLRHSSNLT-EMPVE-AENVKSKTEYYNAWSE-WERNAPPGNGEQREMAVSRLR- 66

Query: 62  VHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPI 121
                           C+  +   L+L +  +S  L +      +L++L  + NS+   +
Sbjct: 67  ---------------DCLDRQAHELELNNLGLS-SLPELPP---HLESLVASCNSLT-EL 106

Query: 122 PQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQLV 181
           P+    L +L V       L+          L  L    V  N+L        +P  Q  
Sbjct: 107 PELPQSLKSLLVDNNNLKALSDLP-----PLLEYLG---VSNNQLEK------LPELQ-- 150

Query: 182 ALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHG 241
                             +   L+ +++ N+ +  L           L+F+  G NQ   
Sbjct: 151 ------------------NSSFLKIIDVDNNSLKKLP-----DLPPSLEFIAAGNNQLE- 186

Query: 242 QITDLTKVTQLLFLSVHSNNMSGPLPLISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSL 301
           ++ +L  +  L  +   +N++   LP +  +L  +   NN             +     L
Sbjct: 187 ELPELQNLPFLTAIYADNNSLKK-LPDLPLSLESIVAGNNILEELPE------LQNLPFL 239

Query: 302 IGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSG 361
             +   +N L+  +PD      +LE L + +N  T  LP    SLT L       + LS 
Sbjct: 240 TTIYADNNLLK-TLPDLP---PSLEALNVRDNYLT-DLPELPQSLTFLDVSENIFSGLSE 294

Query: 362 TIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAF 421
             P        L  L+   NE   ++     +    +  L + +N     LP        
Sbjct: 295 LPP-------NLYYLNASSNEIR-SLC----DLPPSLEELNVSNNKLIE-LPALPPR--- 338

Query: 422 LQILDLADNNLFGTIPKCINNITGM-VAANSFTRSSQQYLPLPLDGDVILTEKASVVSEG 480
           L+ L  + N+L   +P+   N+  + V  N          P                   
Sbjct: 339 LERLIASFNHL-AEVPELPQNLKQLHVEYNPLR-----EFP------------------- 373

Query: 481 EAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSL 540
                D   ++    D+  N+    +P    NLK    L+   N      P+      S+
Sbjct: 374 -----DIPESV---EDLRMNSHLAEVPELPQNLK---QLHVETNPLR-EFPDIPE---SV 418

Query: 541 ESIDFSVNQLSGEIPQSMSNLMSLNHLNLSNNKLT 575
           E +  +  ++      +      L      ++   
Sbjct: 419 EDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 96.6 bits (241), Expect = 2e-21
 Identities = 90/513 (17%), Positives = 157/513 (30%), Gaps = 124/513 (24%)

Query: 83  LESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLN 142
           L+     SS+++  +  +    K+      A +      P   G    + V ++ +    
Sbjct: 13  LQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCL-- 69

Query: 143 GTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQK 202
                       +     +    L+                           P+      
Sbjct: 70  ----------DRQAHELELNNLGLS-------------------------SLPELP---P 91

Query: 203 HLQYLNLLNSGMSDLFP-IRFLKSAFQLKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNN 261
           HL+ L    + +++L    + LKS   L   +  L         L        L V +N 
Sbjct: 92  HLESLVASCNSLTELPELPQSLKS---LLVDNNNLKALSDLPPLLEY------LGVSNNQ 142

Query: 262 MSGPLPLIS--SNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCW 319
           +   LP +   S L  +D+ NNS        L    + P SL  +   +N L+ E+P+  
Sbjct: 143 LEK-LPELQNSSFLKIIDVDNNS--------LKKLPDLPPSLEFIAAGNNQLE-ELPE-L 191

Query: 320 MSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVG 379
            +   L  +   NN    KLP+   SL S++    G N L       L+N   L ++   
Sbjct: 192 QNLPFLTAIYADNNSLK-KLPDLPLSLESIV---AGNNIL--EELPELQNLPFLTTIYAD 245

Query: 380 ENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKC 439
            N     +P         +  L +R N     LP     L FL + +   + L     + 
Sbjct: 246 NNLLK-TLPDL----PPSLEALNVRDNYLTD-LPELPQSLTFLDVSENIFSGL----SEL 295

Query: 440 INNITGM-VAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVS 498
             N+  +  ++N                                   D   +L +E +VS
Sbjct: 296 PPNLYYLNASSNEIRSLC-----------------------------DLPPSL-EELNVS 325

Query: 499 RNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSM 558
            N L   +P     L   + L  S N     +PE      +L+ +    N L  E P   
Sbjct: 326 NNKLI-ELPALPPRL---ERLIASFNHLA-EVPELPQ---NLKQLHVEYNPLR-EFPDIP 376

Query: 559 SNLMSLNHLNLSNNKLTGKIPSSTQLQSFDASS 591
            ++  L      N+ L         L+     +
Sbjct: 377 ESVEDLR----MNSHLAEVPELPQNLKQLHVET 405

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 82.7 bits (205), Expect = 7e-17
 Identities = 70/381 (18%), Positives = 124/381 (32%), Gaps = 83/381 (21%)

Query: 228 QLKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNNMSGPLPLISSNLVYLDLSNNSFSGSV 287
            L+      +       +   V          +      P  +     + +S        
Sbjct: 12  FLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRL------ 65

Query: 288 SHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLT 347
                 R    +    L+L +  L   +P+      +LE L  S N  T +LP    SL 
Sbjct: 66  ------RDCLDRQAHELELNNLGLS-SLPE---LPPHLESLVASCNSLT-ELPELPQSLK 114

Query: 348 SLIWLLLGKNRLSGTIPV---------------SLKNCTALESLDVGENEFVGNIPTWTG 392
           SL+        LS   P+                L+N + L+ +DV  N     +P    
Sbjct: 115 SLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLK-KLP---- 169

Query: 393 ERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSF 452
           +    +  +   +N     LP  L +L FL  +   +N+L   +P    ++  +VA N+ 
Sbjct: 170 DLPPSLEFIAAGNNQLEE-LPE-LQNLPFLTAIYADNNSL-KKLPDLPLSLESIVAGNNI 226

Query: 453 TRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLV--KETDVSRNNLTKSIPLEM 510
                    LP                       E+ NL          N L  ++P   
Sbjct: 227 LEE------LP-----------------------ELQNLPFLTTIYADNNLLK-TLPDLP 256

Query: 511 TNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLS 570
            +L   ++LN   N  T  +PE   ++  L+  +   + LS   P       +L +LN S
Sbjct: 257 PSL---EALNVRDNYLT-DLPELPQSLTFLDVSENIFSGLSELPP-------NLYYLNAS 305

Query: 571 NNKLTGKIPSSTQLQSFDASS 591
           +N++         L+  + S+
Sbjct: 306 SNEIRSLCDLPPSLEELNVSN 326

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 79.3 bits (196), Expect = 9e-16
 Identities = 91/491 (18%), Positives = 148/491 (30%), Gaps = 135/491 (27%)

Query: 103 QFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVG 162
               L      ++++   +P    ++ +        ++              +++  R+ 
Sbjct: 9   SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPG-NGEQREMAVSRLR 66

Query: 163 GNKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRF 222
                                                  +    L L N G+S L     
Sbjct: 67  DCLD-----------------------------------RQAHELELNNLGLSSLPE--- 88

Query: 223 LKSAFQLKFLDLGLNQFHGQITDLTK-VTQLLFLSVHSNNMSGPLPLISSNLVYLDLSNN 281
                 L+ L    N     +T+L +    L  L V +NN+   L  +   L YL +SNN
Sbjct: 89  --LPPHLESLVASCNS----LTELPELPQSLKSLLVDNNNLK-ALSDLPPLLEYLGVSNN 141

Query: 282 SFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPN 341
                +       +     L  + + +NSL+ ++PD      +LE +   NN+   +LP 
Sbjct: 142 QLE-KLPE-----LQNSSFLKIIDVDNNSLK-KLPD---LPPSLEFIAAGNNQLE-ELPE 190

Query: 342 SLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVL 401
            L +L  L  +    N L   +P    +   LES+  G N     +P             
Sbjct: 191 -LQNLPFLTAIYADNNSLK-KLPDLPLS---LESIVAGNNILE-ELPE------------ 232

Query: 402 ILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGM-VAANSFTRSSQQYL 460
                         L +L FL  +   DNNL  T+P    ++  + V  N  T       
Sbjct: 233 --------------LQNLPFLTTIYA-DNNLLKTLPDLPPSLEALNVRDNYLTD------ 271

Query: 461 PLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLN 520
            LP                      +   +L    DVS N  +  +     NL     LN
Sbjct: 272 -LP----------------------ELPQSL-TFLDVSENIFS-GLSELPPNLY---YLN 303

Query: 521 FSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLSNNKLTGKIPS 580
            S N     I        SLE ++ S N+L  E+P     L     L  S N L      
Sbjct: 304 ASSN----EIRSLCDLPPSLEELNVSNNKLI-ELPALPPRL---ERLIASFNHLAEVPEL 355

Query: 581 STQLQSFDASS 591
              L+      
Sbjct: 356 PQNLKQLHVEY 366

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 75.0 bits (185), Expect = 2e-14
 Identities = 61/333 (18%), Positives = 108/333 (32%), Gaps = 61/333 (18%)

Query: 268 LISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEI 327
             SSNL  + +   +      +Y  +   E  +  G   +       + DC    +    
Sbjct: 18  RHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD--RQAHE 75

Query: 328 LELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNI 387
           LEL+N   +  LP     L SL+      N L+  +P   ++  +L   +          
Sbjct: 76  LELNNLGLS-SLPELPPHLESLV---ASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLP 130

Query: 388 PTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGM- 446
           P         +  L + +N     LP  L + +FL+I+D+ +N+L   +P    ++  + 
Sbjct: 131 PL--------LEYLGVSNNQLEK-LPE-LQNSSFLKIIDVDNNSL-KKLPDLPPSLEFIA 179

Query: 447 VAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLV--KETDVSRNNLTK 504
              N                                 E  E+ NL          N+L  
Sbjct: 180 AGNNQLE------------------------------ELPELQNLPFLTAIYADNNSLK- 208

Query: 505 SIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSL 564
            +P    +L   +S+   +N         +  +  L +I    N L   +P    +L   
Sbjct: 209 KLPDLPLSL---ESIVAGNNILE--ELPELQNLPFLTTIYADNNLLK-TLPDLPPSL--- 259

Query: 565 NHLNLSNNKLTGKIPSSTQLQSFDASSFTGNDL 597
             LN+ +N LT        L   D S    + L
Sbjct: 260 EALNVRDNYLTDLPELPQSLTFLDVSENIFSGL 292

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 46.9 bits (112), Expect = 2e-05
 Identities = 25/127 (19%), Positives = 45/127 (35%), Gaps = 20/127 (15%)

Query: 489 LNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGA------------ 536
              ++E     +NLT  +P+E  N+K+      + + +    P   G             
Sbjct: 10  NTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDC 68

Query: 537 -MRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLSNNKLTGKIPSS-TQLQSFDASSFTG 594
             R    ++ +   LS  +P+   +   L  L  S N LT ++P     L+S    +   
Sbjct: 69  LDRQAHELELNNLGLS-SLPELPPH---LESLVASCNSLT-ELPELPQSLKSLLVDNNNL 123

Query: 595 NDLCGAP 601
             L   P
Sbjct: 124 KALSDLP 130

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 97.0 bits (242), Expect = 3e-22
 Identities = 59/342 (17%), Positives = 108/342 (31%), Gaps = 63/342 (18%)

Query: 82  ELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKL 141
             +   +  SS+   L        N+  LDL+ N +       L   + L +L + +N L
Sbjct: 11  RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL 70

Query: 142 NGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQ 201
             TL      +L+ L    +  N +                               L   
Sbjct: 71  YETLD---LESLSTLRTLDLNNNYVQE-----------------------------LLVG 98

Query: 202 KHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNN 261
             ++ L+  N+ +S +      +     K + L  N+       +T +  L         
Sbjct: 99  PSIETLHAANNNISRV-SCSRGQG---KKNIYLANNK-------ITMLRDLDEGCR---- 143

Query: 262 MSGPLPLISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMS 321
                    S + YLDL  N         L        +L  L L+ N +  ++    + 
Sbjct: 144 ---------SRVQYLDLKLNEIDTVNFAEL---AASSDTLEHLNLQYNFIY-DVKG-QVV 189

Query: 322 YQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGEN 381
           +  L+ L+LS+NK    +     S   + W+ L  N+L   I  +L+    LE  D+  N
Sbjct: 190 FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGN 247

Query: 382 EFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQ 423
            F          +  R+  +  ++           C +  L 
Sbjct: 248 GFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLG 289

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 82.3 bits (204), Expect = 3e-17
 Identities = 45/277 (16%), Positives = 90/277 (32%), Gaps = 36/277 (12%)

Query: 299 KSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNR 358
                 K+ D+SL+  +     S  N++ L+LS N  +      L   T L  L L  N 
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69

Query: 359 LSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCD 418
           L       L++ + L +LD+  N     +          +  L   +NN    +      
Sbjct: 70  LY-ETL-DLESLSTLRTLDLNNNYV-QELLV-----GPSIETLHAANNNISR-VSCSR-- 118

Query: 419 LAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVS 478
               + + LA+N +           + +               L L  + I       V+
Sbjct: 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQY-------------LDLKLNEI-----DTVN 160

Query: 479 EGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMR 538
             E        + ++  ++  N +   +  +       ++L+ S N     +     +  
Sbjct: 161 FAELAAS---SDTLEHLNLQYNFIY-DVKGQ-VVFAKLKTLDLSSNKLA-FMGPEFQSAA 214

Query: 539 SLESIDFSVNQLSGEIPQSMSNLMSLNHLNLSNNKLT 575
            +  I    N+L   I +++    +L H +L  N   
Sbjct: 215 GVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 80.8 bits (200), Expect = 9e-17
 Identities = 62/430 (14%), Positives = 119/430 (27%), Gaps = 127/430 (29%)

Query: 4   LEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVH 63
            +   + ++ L+    +    +  ++  LDLS N                L  I      
Sbjct: 12  YKIEKVTDSSLK-QALASLRQSAWNVKELDLSGN---------------PLSQI------ 49

Query: 64  LSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQ 123
                       +      LE L+L S+ +     D L     L  LDL NN +     Q
Sbjct: 50  -------SAADLAPFTK--LELLNLSSNVLY-ETLD-LESLSTLRTLDLNNNYV-----Q 93

Query: 124 SLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQLVAL 183
            L    ++  L   NN ++  +S         +    +  NK+T+      +        
Sbjct: 94  ELLVGPSIETLHAANNNIS-RVSCSRGQGKKNIY---LANNKITM------LRDLDEGCR 143

Query: 184 GFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQI 243
                               +QYL+L  + +  +       S+  L+ L+L  N      
Sbjct: 144 ------------------SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF----- 180

Query: 244 TDLTKVTQLLFLSVHSNNMSGPLPLISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIG 303
             +  V   +                 + L  LDLS+N  +                   
Sbjct: 181 --IYDVKGQVVF---------------AKLKTLDLSSNKLA------------------- 204

Query: 304 LKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLS-GT 362
                      +   + S   +  + L NNK    +  +L    +L    L  N    GT
Sbjct: 205 ----------FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGT 253

Query: 363 IPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFL 422
           +         ++++     + +        E    +  L          LP         
Sbjct: 254 LRDFFSKNQRVQTVAKQTVKKLTGQN----EEECTVPTLGHYGAYCCEDLP----APFAD 305

Query: 423 QILDLADNNL 432
           +++ L  ++ 
Sbjct: 306 RLIALGHHHH 315

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 80.4 bits (199), Expect = 1e-16
 Identities = 48/296 (16%), Positives = 94/296 (31%), Gaps = 47/296 (15%)

Query: 315 IPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALE 374
           I +   +    +I +++++     L +   S  ++  L L  N LS      L   T LE
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 375 SLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFG 434
            L++  N              S +  L L +N         L     ++ L  A+NN+  
Sbjct: 62  LLNLSSNVLY-ETLDLES--LSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNI-S 112

Query: 435 TIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVK- 493
            +             +           + L  + I             +   +     + 
Sbjct: 113 RVS-----------CSRGQGKKN----IYLANNKI-----------TMLRDLDEGCRSRV 146

Query: 494 -ETDVSRNNLTK-SIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLS 551
              D+  N +   +      +    + LN  +N     +   +     L+++D S N+L+
Sbjct: 147 QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVV-FAKLKTLDLSSNKLA 204

Query: 552 GEIPQSMSNLMSLNHLNLSNNKLT---GKIPSSTQLQSFDASSFTGNDLCGAPLPK 604
             +     +   +  ++L NNKL      +  S  L+ FD     GN      L  
Sbjct: 205 -FMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLR---GNGFHCGTLRD 256

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 79.6 bits (197), Expect = 2e-16
 Identities = 53/313 (16%), Positives = 110/313 (35%), Gaps = 36/313 (11%)

Query: 3   HLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGV 62
           +++ L L  N L   I +  L   T +  L+LS N      +      L +L    LR +
Sbjct: 35  NVKELDLSGNPLS-QISAADLAPFTKLELLNLSSN-----VL-YETLDLESLS--TLRTL 85

Query: 63  HLSQ-EISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPI 121
            L+   + E+L          +E+L   +++IS        + +   N+ LANN I    
Sbjct: 86  DLNNNYVQELLV------GPSIETLHAANNNIS---RVSCSRGQGKKNIYLANNKITMLR 136

Query: 122 PQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQLV 181
               G  S ++ L +  N+++        ++   L    +  N +        +   +L 
Sbjct: 137 DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY--DVKGQVVFAKLK 194

Query: 182 ALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDL-FPIRFLKSAFQLKFLDLGLNQFH 240
            L   +  + +       S   + +++L N+ +  +   +RF ++   L+  DL  N FH
Sbjct: 195 TLDLSSNKL-AFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQN---LEHFDLRGNGFH 250

Query: 241 GQITD--LTKVTQLLFLSVHSNNMSGPLPLISSNLVYLDLSNNSFSGSVSHYLCYRINEP 298
                   +K  ++  ++  +             +  L             Y C  +  P
Sbjct: 251 CGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGA--------YCCEDLPAP 302

Query: 299 KSLIGLKLKDNSL 311
            +   + L  +  
Sbjct: 303 FADRLIALGHHHH 315

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 72.3 bits (178), Expect = 6e-14
 Identities = 35/188 (18%), Positives = 66/188 (35%), Gaps = 10/188 (5%)

Query: 1   FIHLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLR 60
               + + L NNK+   +     G  + +  LDL LN           AS   L+ +NL+
Sbjct: 119 GQGKKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177

Query: 61  GVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGP 120
              +  ++   +          L++LDL S+ ++  +  +      +  + L NN +V  
Sbjct: 178 YNFIY-DVKGQVVFAK------LKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVL- 228

Query: 121 IPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQL 180
           I ++L    NL    +  N  +       FS   ++        K       +      L
Sbjct: 229 IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTL 288

Query: 181 VALGFHNC 188
              G + C
Sbjct: 289 GHYGAYCC 296

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 52.3 bits (126), Expect = 2e-07
 Identities = 16/82 (19%), Positives = 31/82 (37%), Gaps = 1/82 (1%)

Query: 505 SIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSL 564
           +I     N    +    + +S    +     +  +++ +D S N LS      ++    L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 565 NHLNLSNNKLTGKIPSSTQLQS 586
             LNLS+N L  +      L +
Sbjct: 61  ELLNLSSNVLY-ETLDLESLST 81

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 98.0 bits (244), Expect = 2e-21
 Identities = 72/377 (19%), Positives = 128/377 (33%), Gaps = 53/377 (14%)

Query: 69  SEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHL 128
           + ++     C++     L++  S ++  L D L    ++  L + +N++   +P      
Sbjct: 28  AAVVQKMRACLNNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPALPP-- 81

Query: 129 SNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLT--------LEVRHDWIP---- 176
             LR L++  N+L  +L       L +LS F      L         L +  + +     
Sbjct: 82  -ELRTLEVSGNQLT-SLPV-LPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPV 138

Query: 177 -PFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLG 235
            P  L  L   +  + S  P        L  L   N+ ++ L           L+ L + 
Sbjct: 139 LPPGLQELSVSDNQLAS-LPALPS---ELCKLWAYNNQLTSL-----PMLPSGLQELSVS 189

Query: 236 LNQFHGQITDLTK-VTQLLFLSVHSNNMSGPLPLISSNLVYLDLSNNSFSGSVSHYLCYR 294
            NQ    +  L    ++L  L  ++N ++  LP + S L  L +S N         L   
Sbjct: 190 DNQ----LASLPTLPSELYKLWAYNNRLT-SLPALPSGLKELIVSGNR--------LTSL 236

Query: 295 INEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLL 354
              P  L  L +  N L   +P        L  L +  N+ T +LP SL  L+S   + L
Sbjct: 237 PVLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNL 291

Query: 355 GKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPT 414
             N LS     +L+  T+          F     +   E  +  +     ++        
Sbjct: 292 EGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAA---ADWLVPAREG 348

Query: 415 RLCDLAFLQILDLADNN 431
                    +    DN 
Sbjct: 349 EPAPADRWHMFGQEDNA 365

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 97.3 bits (242), Expect = 3e-21
 Identities = 73/361 (20%), Positives = 121/361 (33%), Gaps = 73/361 (20%)

Query: 228 QLKFLDLGLNQFHGQITDLTKV--TQLLFLSVHSNNMSGPLPLISSNLVYLDLSNNSFSG 285
               L++G +     +T L       +  L +  NN++  LP +   L  L++S N  + 
Sbjct: 41  GNAVLNVGESG----LTTLPDCLPAHITTLVIPDNNLTS-LPALPPELRTLEVSGNQLT- 94

Query: 286 SVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGS 345
                L         L         L             L  L +  N+ T  LP     
Sbjct: 95  ----SLPVLPPGLLELSIFSNPLTHLPALPS-------GLCKLWIFGNQLT-SLPVLPPG 142

Query: 346 LTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRS 405
           L  L    +  N+L+ ++P        L  L    N+   ++P       S +  L +  
Sbjct: 143 LQELS---VSDNQLA-SLPALPSE---LCKLWAYNNQLT-SLP----MLPSGLQELSVSD 190

Query: 406 NNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITG-MVAANSFTRSSQQYLPLPL 464
           N     LPT   +L  L       NN   ++P   + +   +V+ N  T        LP 
Sbjct: 191 NQLAS-LPTLPSELYKLWAY----NNRLTSLPALPSGLKELIVSGNRLTS-------LP- 237

Query: 465 DGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHN 524
                                     L KE  VS N LT S+P+  + L    SL+   N
Sbjct: 238 ---------------------VLPSEL-KELMVSGNRLT-SLPMLPSGL---LSLSVYRN 271

Query: 525 SFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLSNNKLTGKIPSSTQL 584
             T R+PES+  + S  +++   N LS    Q++  + S    +    +      S+ + 
Sbjct: 272 QLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRE 330

Query: 585 Q 585
            
Sbjct: 331 T 331

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 94.2 bits (234), Expect = 3e-20
 Identities = 74/329 (22%), Positives = 111/329 (33%), Gaps = 73/329 (22%)

Query: 105 KNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGN 164
                L++  + +   +P  L   +++  L I +N L  +L       L  L    V GN
Sbjct: 40  NGNAVLNVGESGL-TTLPDCLP--AHITTLVIPDNNLT-SLPA-LPPELRTL---EVSGN 91

Query: 165 KLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLK 224
           +LT                           P        L   +   + +  L       
Sbjct: 92  QLT-------------------------SLPVLPPGLLELSIFSNPLTHLPALPS----- 121

Query: 225 SAFQLKFLDLGLNQFHGQITDL-TKVTQLLFLSVHSNNMSGPLPLISSNLVYLDLSNNSF 283
               L  L +  NQ    +T L      L  LSV  N ++  LP + S L  L   NN  
Sbjct: 122 ---GLCKLWIFGNQ----LTSLPVLPPGLQELSVSDNQLAS-LPALPSELCKLWAYNNQL 173

Query: 284 SGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSL 343
           + S+          P  L  L + DN L   +P        L  L   NN+ T  LP   
Sbjct: 174 T-SLP-------MLPSGLQELSVSDNQLA-SLPT---LPSELYKLWAYNNRLT-SLPALP 220

Query: 344 GSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLIL 403
             L  LI   +  NRL+ ++PV       L+ L V  N    ++P       S ++ L +
Sbjct: 221 SGLKELI---VSGNRLT-SLPVLPSE---LKELMVSGNRLT-SLP----MLPSGLLSLSV 268

Query: 404 RSNNFHGPLPTRLCDLAFLQILDLADNNL 432
             N     LP  L  L+    ++L  N L
Sbjct: 269 YRNQLTR-LPESLIHLSSETTVNLEGNPL 296

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 85.7 bits (212), Expect = 2e-17
 Identities = 53/294 (18%), Positives = 90/294 (30%), Gaps = 82/294 (27%)

Query: 298 PKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKN 357
                 L + ++ L   +PDC     ++  L + +N  T  LP     L +L    +  N
Sbjct: 39  NNGNAVLNVGESGLT-TLPDC--LPAHITTLVIPDNNLT-SLPALPPELRTLE---VSGN 91

Query: 358 RLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLC 417
           +L+ ++PV       L                           L +  N     LP    
Sbjct: 92  QLT-SLPVLPPGLLELSIFSNPLTHLPALPSGLC--------KLWIFGNQLTS-LPVLPP 141

Query: 418 DLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVV 477
            L   Q L ++DN L  ++P   + +                                  
Sbjct: 142 GL---QELSVSDNQL-ASLPALPSELC--------------------------------- 164

Query: 478 SEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAM 537
                        L        N LT S+P+  + L   Q L+ S N     +P     +
Sbjct: 165 ------------KL----WAYNNQLT-SLPMLPSGL---QELSVSDNQLA-SLPTLPSEL 203

Query: 538 RSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLSNNKLTGKIPSSTQLQSFDASS 591
             L + +   N+L+  +P   S L     L +S N+LT      ++L+    S 
Sbjct: 204 YKLWAYN---NRLT-SLPALPSGL---KELIVSGNRLTSLPVLPSELKELMVSG 250

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 83.8 bits (207), Expect = 6e-17
 Identities = 69/377 (18%), Positives = 128/377 (33%), Gaps = 75/377 (19%)

Query: 202 KHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQITDLTK-VTQLLFLSVHSN 260
                LN+  SG++ L P         +  L +  N     +T L     +L  L V  N
Sbjct: 40  NGNAVLNVGESGLTTL-PDCLPA---HITTLVIPDNN----LTSLPALPPELRTLEVSGN 91

Query: 261 NMSGPLPLISSNLVYLDLSNNSFSGSVSHYLCYRI-NEPKSLIGLKLKDNSLQGEIPDCW 319
            ++  LP++   L+ L + +N  +          +   P  L  L +  N L   +P   
Sbjct: 92  QLTS-LPVLPPGLLELSIFSNPLT---------HLPALPSGLCKLWIFGNQLT-SLPV-- 138

Query: 320 MSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVG 379
                L+ L +S+N+    LP     L  L       N+L+ ++P+       L+ L V 
Sbjct: 139 -LPPGLQELSVSDNQLA-SLPALPSELCKL---WAYNNQLT-SLPMLPSG---LQELSVS 189

Query: 380 ENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKC 439
           +N+   ++P       S +  L   +N     LP     L   + L ++ N L  ++P  
Sbjct: 190 DNQLA-SLP----TLPSELYKLWAYNNRLT-SLPALPSGL---KELIVSGNRL-TSLPVL 239

Query: 440 INNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSR 499
            + +  ++ + +   S      LP                           L     V R
Sbjct: 240 PSELKELMVSGNRLTS------LP----------------------MLPSGL-LSLSVYR 270

Query: 500 NNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESID---FSVNQLSGEIPQ 556
           N LT  +P  + +L +  ++N   N  + R  +++  + S           +      P+
Sbjct: 271 NQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPR 329

Query: 557 SMSNLMSLNHLNLSNNK 573
               L       L   +
Sbjct: 330 ETRALHLAAADWLVPAR 346

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 48.0 bits (114), Expect = 9e-06
 Identities = 41/241 (17%), Positives = 73/241 (30%), Gaps = 74/241 (30%)

Query: 354 LGKNRLSGTIPVSLKNC--TALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGP 411
             ++R    +   ++ C       L+VGE+     +P       + +  L++  NN    
Sbjct: 21  AEESRGRAAVVQKMRACLNNGNAVLNVGESGL-TTLPD---CLPAHITTLVIPDNNLTS- 75

Query: 412 LPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILT 471
           LP    +L   + L+++ N L  ++P     +  +                         
Sbjct: 76  LPALPPEL---RTLEVSGNQL-TSLPVLPPGLLEL------------------------- 106

Query: 472 EKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIP 531
                           I +          +L        + L     L    N  T  +P
Sbjct: 107 ---------------SIFSN------PLTHLPALP----SGL---CKLWIFGNQLT-SLP 137

Query: 532 ESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLSNNKLTGKIPSS-TQLQSFDAS 590
                   L+ +  S NQL+  +P   S L     L   NN+LT  +P   + LQ    S
Sbjct: 138 VLPP---GLQELSVSDNQLA-SLPALPSEL---CKLWAYNNQLT-SLPMLPSGLQELSVS 189

Query: 591 S 591
            
Sbjct: 190 D 190

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 41.4 bits (97), Expect = 9e-04
 Identities = 33/168 (19%), Positives = 54/168 (32%), Gaps = 29/168 (17%)

Query: 3   HLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLN--TGPEGRIPRSMASLCNLKSINLR 60
            L+ L +  N+L  T        L S   L +  N  T    R+P S+  L +  ++NL 
Sbjct: 242 ELKELMVSGNRL--TSLPMLPSGLLS---LSVYRNQLT----RLPESLIHLSSETTVNLE 292

Query: 61  GVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGP 120
           G  LS+   + L         E+ S    S  I           +    L LA    + P
Sbjct: 293 GNPLSERTLQALR--------EITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVP 344

Query: 121 ----------IPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSW 158
                          G   N     ++ ++L+ T + I  +       
Sbjct: 345 AREGEPAPADRWHMFGQEDNADAFSLFLDRLSETENFIKDAGFKAQIS 392

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 96.7 bits (241), Expect = 2e-21
 Identities = 71/414 (17%), Positives = 137/414 (33%), Gaps = 43/414 (10%)

Query: 3   HLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGV 62
           H+ Y+ L  N +   ++  +   L  +  L +   T        +   L +L  + L   
Sbjct: 31  HVNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 63  HLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNL---DLANNSIVG 119
               ++      F+G  +  LE L L   ++ G +      FK L +L    L +N+I  
Sbjct: 90  QF-LQLET--GAFNGLAN--LEVLTLTQCNLDGAVLSG-NFFKPLTSLEMLVLRDNNIKK 143

Query: 120 PIPQSL-GHLSNLRVLQIYNNKLNGTLSEIHFSNLTK--LSWFRVGGNKLTLEVRHDWIP 176
             P S   ++    VL +  NK+  ++ E    N      +  R+    L          
Sbjct: 144 IQPASFFLNMRRFHVLDLTFNKVK-SICEEDLLNFQGKHFTLLRLSSITL---------- 192

Query: 177 PFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGL 236
                    +  ++G            +  L+L  +G  +    RF  +    K   L L
Sbjct: 193 ------QDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLIL 246

Query: 237 NQFHGQITDLTKVTQLLFLSVHSNNMSGPLPLISSNLVYLDLSNNSFSGSVSHYLCYRIN 296
           +  +   +     T        +        L +S +   DLS +    ++   +    +
Sbjct: 247 SNSYNMGSSFGH-TNFKDPDNFTFK-----GLEASGVKTCDLSKSKIF-ALLKSVF---S 296

Query: 297 EPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGK 356
               L  L L  N +     + +    +L  L LS N           +L  L  L L  
Sbjct: 297 HFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSY 356

Query: 357 NRLSGTIPV-SLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFH 409
           N +   +   S      L+ L +  N+   ++P    +R + +  + L +N + 
Sbjct: 357 NHIR-ALGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 408

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 94.8 bits (236), Expect = 8e-21
 Identities = 67/363 (18%), Positives = 127/363 (34%), Gaps = 46/363 (12%)

Query: 106 NLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNK 165
           +++ +DL+ NSI      S   L +L+ L++        +    F  L+ L   ++  N+
Sbjct: 31  HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90

Query: 166 LTLEVRHDWIPP------FQLVALGFHNCYVGSRF--PQWLHSQKHLQYLNLLNSGMSDL 217
                    +          L  L    C +        +      L+ L L ++ +  +
Sbjct: 91  FLQ------LETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKI 144

Query: 218 FPIRFLKSAFQLKFLDLGLNQF----HGQITDLTKVTQLLFLSVHSNNMSG--------- 264
            P  F  +  +   LDL  N+        + +         L + S  +           
Sbjct: 145 QPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQG-KHFTLLRLSSITLQDMNEYWLGWE 203

Query: 265 --PLPLISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQG--------- 313
               P  ++++  LDLS N F  S++      I   K +  L L ++   G         
Sbjct: 204 KCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTK-IQSLILSNSYNMGSSFGHTNFK 262

Query: 314 EIPDCW---MSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNC 370
           +  +     +    ++  +LS +K    L +     T L  L L +N ++     +    
Sbjct: 263 DPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGL 322

Query: 371 TALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCD-LAFLQILDLAD 429
           T L  L++ +N   G+I +   E   ++ VL L  N+    L  +    L  L+ L L  
Sbjct: 323 THLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIRA-LGDQSFLGLPNLKELALDT 380

Query: 430 NNL 432
           N L
Sbjct: 381 NQL 383

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 75.2 bits (185), Expect = 2e-14
 Identities = 69/363 (19%), Positives = 123/363 (33%), Gaps = 52/363 (14%)

Query: 266 LPLISSNLVYLDLSNNSFS----GSVSHYLCYRINEPKSLIGLKLKDNSLQGEIP-DCWM 320
           +P + +++ Y+DLS NS +     S S          + L  LK++  +    I  + + 
Sbjct: 25  VPELPAHVNYVDLSLNSIAELNETSFSRL--------QDLQFLKVEQQTPGLVIRNNTFR 76

Query: 321 SYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRL-SGTIPV-SLKNCTALESLDV 378
              +L IL+L  N+F      +   L +L  L L +  L    +     K  T+LE L +
Sbjct: 77  GLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVL 136

Query: 379 GENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAF-------LQILDLADNN 431
            +N      P        R  VL L  N         +C+            +L L+   
Sbjct: 137 RDNNIKKIQPASFFLNMRRFHVLDLTFNKV-----KSICEEDLLNFQGKHFTLLRLSSIT 191

Query: 432 LFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDG-DVILTEKASVVSEGEAIEY-DEIL 489
           L          +      N F  +S   L L  +G    + ++      G  I+      
Sbjct: 192 LQDMNE---YWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSN 248

Query: 490 NLVKETDVSRNNLTKSIPLEMTNLKAT--QSLNFSHNSFTGRIPESI-GAMRSLESIDFS 546
           +    +     N           L+A+  ++ + S +     + +S+      LE +  +
Sbjct: 249 SYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLA 307

Query: 547 VNQLSGEIPQSMSNLMSLNHLNLSNNKLTGKIPSST---------------QLQSFDASS 591
            N+++     +   L  L  LNLS N L   I S                  +++    S
Sbjct: 308 QNEINKIDDNAFWGLTHLLKLNLSQNFLG-SIDSRMFENLDKLEVLDLSYNHIRALGDQS 366

Query: 592 FTG 594
           F G
Sbjct: 367 FLG 369

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 53.6 bits (129), Expect = 1e-07
 Identities = 36/179 (20%), Positives = 64/179 (35%), Gaps = 19/179 (10%)

Query: 2   IHLEYLSLRNNKLQGTIDSEA--LGNLTSISRLDLSLNTGPEGRIPR------SMASLCN 53
             +  L L  N  + ++          T I  L LS +                  +   
Sbjct: 212 TSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKG 271

Query: 54  LKSINLRGVHLSQ-EISEILN-IFSGCVSIELESLDLRS---SSISGHLTDQLGQFKNLD 108
           L++  ++   LS+ +I  +L  +FS     +LE L L     + I  +    L    +L 
Sbjct: 272 LEASGVKTCDLSKSKIFALLKSVFSHFT--DLEQLTLAQNEINKIDDNAFWGL---THLL 326

Query: 109 NLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLT 167
            L+L+ N +     +   +L  L VL +  N +   L +  F  L  L    +  N+L 
Sbjct: 327 KLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHI-RALGDQSFLGLPNLKELALDTNQLK 384

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 93.6 bits (233), Expect = 2e-20
 Identities = 65/386 (16%), Positives = 125/386 (32%), Gaps = 89/386 (23%)

Query: 3   HLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRI----PRSMASLCNLKSIN 58
               L L  N+++ T++ +   +   +  L+L+ N      +    P +  +L NL+++ 
Sbjct: 33  ETRLLDLGKNRIK-TLNQDEFASFPHLEELELNEN-----IVSAVEPGAFNNLFNLRTLG 86

Query: 59  LRGVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIV 118
           LR   L   I     +F+G  +  L  LD+  + I   L        NL +L++ +N +V
Sbjct: 87  LRSNRLK-LIPL--GVFTGLSN--LTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV 141

Query: 119 GPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPF 178
               ++   L++L  L +    L  ++     S+L  L   R+    +            
Sbjct: 142 YISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNIN----------- 189

Query: 179 QLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQ 238
                      +     + L+    L+ L + +    D      L     L  L +    
Sbjct: 190 ----------AIRDYSFKRLYR---LKVLEISHWPYLDTMTPNCLYG-LNLTSLSITHCN 235

Query: 239 FHGQITDLTKVTQLLFLSVHSNNMSGPLPLISSNLVYLDLSNNSFSGSVSHYLCYRINEP 298
                  LT V  L    +               L +L+LS N  S              
Sbjct: 236 -------LTAVPYLAVRHL-------------VYLRFLNLSYNPIS-------------- 261

Query: 299 KSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNR 358
                  ++ + L             L+ ++L   +     P +   L  L  L +  N+
Sbjct: 262 ------TIEGSMLHE--------LLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ 307

Query: 359 LSGTIPVSLKNCTALESLDVGENEFV 384
           L+        +   LE+L +  N   
Sbjct: 308 LTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 92.5 bits (230), Expect = 6e-20
 Identities = 57/329 (17%), Positives = 112/329 (34%), Gaps = 51/329 (15%)

Query: 104 FKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGG 163
                 LDL  N I            +L  L++  N +   +    F+NL  L    +  
Sbjct: 31  PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIV-SAVEPGAFNNLFNLRTLGLRS 89

Query: 164 NKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFL 223
           N+L L      IP      L                   +L  L++  + +  L    F 
Sbjct: 90  NRLKL------IPLGVFTGL------------------SNLTKLDISENKIVILLDYMF- 124

Query: 224 KSAFQLKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNNMSGPLPLISSNLVYLDLSNNSF 283
           +  + LK L++G N        L  ++   F           L     +L  L L   + 
Sbjct: 125 QDLYNLKSLEVGDND-------LVYISHRAF---------SGLN----SLEQLTLEKCNL 164

Query: 284 SGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSL 343
           + S+       ++    LI L+L+  ++       +     L++LE+S+  +   +  + 
Sbjct: 165 T-SIPTEA---LSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNC 220

Query: 344 GSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLIL 403
               +L  L +    L+    +++++   L  L++  N     I         R+  + L
Sbjct: 221 LYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQL 279

Query: 404 RSNNFHGPLPTRLCDLAFLQILDLADNNL 432
                    P     L +L++L+++ N L
Sbjct: 280 VGGQLAVVEPYAFRGLNYLRVLNVSGNQL 308

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 86.7 bits (215), Expect = 5e-18
 Identities = 55/312 (17%), Positives = 102/312 (32%), Gaps = 61/312 (19%)

Query: 269 ISSNLVYLDLSNNSFS----GSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQN 324
           I +    LDL  N          + +          L  L+L +N +    P  + +  N
Sbjct: 30  IPTETRLLDLGKNRIKTLNQDEFASF--------PHLEELELNENIVSAVEPGAFNNLFN 81

Query: 325 LEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFV 384
           L  L L +N+           L++L  L + +N++   +    ++   L+SL+VG+N+ V
Sbjct: 82  LRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV 141

Query: 385 GNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNIT 444
             I        + +  L L   N        L  L  L +L L   N+            
Sbjct: 142 -YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNI------------ 188

Query: 445 GMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTK 504
             +   SF R                                  L  +K  ++S      
Sbjct: 189 NAIRDYSFKR----------------------------------LYRLKVLEISHWPYLD 214

Query: 505 SIPLEMTNLKATQSLNFSHNSFTGRIPE-SIGAMRSLESIDFSVNQLSGEIPQSMSNLMS 563
           ++           SL+ +H + T  +P  ++  +  L  ++ S N +S      +  L+ 
Sbjct: 215 TMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLR 273

Query: 564 LNHLNLSNNKLT 575
           L  + L   +L 
Sbjct: 274 LQEIQLVGGQLA 285

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 55.9 bits (135), Expect = 2e-08
 Identities = 37/260 (14%), Positives = 71/260 (27%), Gaps = 73/260 (28%)

Query: 324 NLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEF 383
              +L+L  N+      +   S   L  L L +N +S   P +  N   L +L +  N  
Sbjct: 33  ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL 92

Query: 384 VGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNI 443
                             ++    F G        L+ L  LD+++N +           
Sbjct: 93  K-----------------LIPLGVFTG--------LSNLTKLDISENKI----------- 116

Query: 444 TGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLT 503
             ++    F                 L                  L +        N+L 
Sbjct: 117 -VILLDYMFQDLYN------------LKS----------------LEV------GDNDLV 141

Query: 504 KSIPLEM-TNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLM 562
             I     + L + + L     + T    E++  +  L  +      ++     S   L 
Sbjct: 142 -YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLY 200

Query: 563 SLNHLNLSNNKLTGKIPSST 582
            L  L +S+      +  + 
Sbjct: 201 RLKVLEISHWPYLDTMTPNC 220

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 84.6 bits (209), Expect = 5e-18
 Identities = 45/262 (17%), Positives = 83/262 (31%), Gaps = 20/262 (7%)

Query: 187 NCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQF----HGQ 242
           NC   +    +   +     L  +++          +KS   LK L +   +        
Sbjct: 29  NCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKS-LSLKRLTVRAARIPSRILFG 87

Query: 243 ITDLTKVTQLLFLSVHSNNMSGPLP-----LISSNLVYLDLSNNSFSGSVSHYLCYRINE 297
              +  ++ L  L++ +  ++G  P         +L  L+L N S++   +     +   
Sbjct: 88  ALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWL 147

Query: 298 PKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKL-------PNSLGSLTSLI 350
              L  L +          +    +  L  L+LS+N   G+        P    +L  L 
Sbjct: 148 KPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLA 207

Query: 351 WLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHG 410
               G    SG           L+ LD+  N         + +  S++  L L       
Sbjct: 208 LRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ 267

Query: 411 PLPTRLCDLAFLQILDLADNNL 432
                    A L +LDL+ N L
Sbjct: 268 VPK---GLPAKLSVLDLSYNRL 286

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 68.8 bits (168), Expect = 9e-13
 Identities = 59/298 (19%), Positives = 95/298 (31%), Gaps = 70/298 (23%)

Query: 80  SIELESLDLRSSSISGHLTDQLGQFKN---LDNLDLANNSIVGPIPQSLG--HLSNLRVL 134
           S+ L+ L +R++ I   +     +      L  L L N  + G  P  L      +L +L
Sbjct: 67  SLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNIL 126

Query: 135 QIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQLVALGFHNCYVGSRF 194
            + N       + +                                           +  
Sbjct: 127 NLRNVSWATRDAWL-------------------------------------------AEL 143

Query: 195 PQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQIT-----DLTKV 249
            QWL     L+ L++  +  S  F    ++    L  LDL  N   G+          K 
Sbjct: 144 QQWLKP--GLKVLSIAQAH-SLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKF 200

Query: 250 TQLLFLSVHSNNMSGPLPLISS------NLVYLDLSNNSFSGSVSHYLCYRINEPKSLIG 303
             L  L++ +  M  P  + S+       L  LDLS+NS   +     C   + P  L  
Sbjct: 201 PTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSC---DWPSQLNS 257

Query: 304 LKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSG 361
           L L    L+ ++P        L +L+LS N+     P S   L  +  L L  N    
Sbjct: 258 LNLSFTGLK-QVPKGL--PAKLSVLDLSYNRLDR-NP-SPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 67.2 bits (164), Expect = 3e-12
 Identities = 47/294 (15%), Positives = 84/294 (28%), Gaps = 36/294 (12%)

Query: 3   HLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMA--SLCNLKSINLR 60
            LEYL  R +          +    S+ RL +     P   +  ++    +  L+ + L 
Sbjct: 44  SLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLE 103

Query: 61  GVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQF----KNLDNLDLANNS 116
            + ++      L   +G    +L  L+LR+ S +                L  L +A   
Sbjct: 104 NLEVTGTAPPPLLEATG---PDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH 160

Query: 117 IVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIH---FSNLTKLSWFRVGGNKLTLEVRHD 173
            +    + +     L  L + +N   G    I          L    +    +       
Sbjct: 161 SLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMET----- 215

Query: 174 WIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLD 233
                                     ++  LQ L+L ++ + D           QL  L+
Sbjct: 216 ----------------PSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLN 259

Query: 234 LGLNQFHGQITDLTKVTQLLFLSVHSNNMSG-PLPLISSNLVYLDLSNNSFSGS 286
           L           L    +L  L +  N +   P P     +  L L  N F  S
Sbjct: 260 LSFTGLKQVPKGLP--AKLSVLDLSYNRLDRNPSPDELPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 63.0 bits (153), Expect = 6e-11
 Identities = 60/355 (16%), Positives = 107/355 (30%), Gaps = 85/355 (23%)

Query: 232 LDLGLNQFHGQITDLTKVTQLLFLSVHSNNMSGPLPLISSNLVYLDLSNNSFSGSVSHYL 291
           L     + +G    L  + + +         +  +  +S  L  L +        +    
Sbjct: 31  LGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLS--LKRLTVRAARIPSRILFGA 88

Query: 292 CYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQ--NLEILELSNNKFTGKLPNSLGSL--- 346
              +     L  L L++  + G  P   +     +L IL L N  +       L  L   
Sbjct: 89  LRVLGISG-LQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWAT-RDAWLAELQQW 146

Query: 347 --TSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILR 404
               L  L + +          ++   AL +LD+ +N  +G                   
Sbjct: 147 LKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG---------------- 190

Query: 405 SNNFHGPLPTRLCDLAF--LQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPL 462
                  L + LC L F  LQ+L L +  +           +G+ +A +  R   Q L  
Sbjct: 191 -------LISALCPLKFPTLQVLALRNAGM--------ETPSGVCSALAAARVQLQGL-- 233

Query: 463 PLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKAT-QSLNF 521
                                            D+S N+L  +      +  +   SLN 
Sbjct: 234 ---------------------------------DLSHNSLRDAAGAPSCDWPSQLNSLNL 260

Query: 522 SHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLSNNKLTG 576
           S      ++P+ +     L  +D S N+L    P S   L  + +L+L  N    
Sbjct: 261 SFTGLK-QVPKGLP--AKLSVLDLSYNRLD-RNP-SPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 47.6 bits (113), Expect = 6e-06
 Identities = 29/146 (19%), Positives = 47/146 (32%), Gaps = 14/146 (9%)

Query: 1   FIHLEYLSLRNNKLQGTI---DSEALGNLTSISRLDLSLN--TGPEGRIPRSMASLCNLK 55
           F  L  L L +N   G      +       ++  L L       P G      A+   L+
Sbjct: 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQ 231

Query: 56  SINLRGVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANN 115
            ++L    L          +      +L SL+L  + +   +   L     L  LDL+ N
Sbjct: 232 GLDLSHNSLRDAAGAPSCDWPS----QLNSLNLSFTGLK-QVPKGL--PAKLSVLDLSYN 284

Query: 116 SIVGPIPQSLGHLSNLRVLQIYNNKL 141
            +    P S   L  +  L +  N  
Sbjct: 285 RLDR-NP-SPDELPQVGNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 46.8 bits (111), Expect = 1e-05
 Identities = 36/252 (14%), Positives = 68/252 (26%), Gaps = 50/252 (19%)

Query: 343 LGSLTSLIWLLLGKNRLSGTIP-VSLKNCTALESLDVGENEFVGNIPTWTGE--RFSRMV 399
            G   SL +LL   +  +       +    +L+ L V        I          S + 
Sbjct: 39  YGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQ 98

Query: 400 VLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQY 459
            L L +    G  P  L +     +  L   N+                 +++    QQ+
Sbjct: 99  ELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR------------DAWLAELQQW 146

Query: 460 LPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSL 519
           L   L                            K   +++ +       ++    A  +L
Sbjct: 147 LKPGL----------------------------KVLSIAQAHSLNFSCEQVRVFPALSTL 178

Query: 520 NFSHNSFTGRIPESI----GAMRSLESIDFSVNQ---LSGEIPQSMSNLMSLNHLNLSNN 572
           + S N   G              +L+ +          SG      +  + L  L+LS+N
Sbjct: 179 DLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHN 238

Query: 573 KLTGKIPSSTQL 584
            L     + +  
Sbjct: 239 SLRDAAGAPSCD 250

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 85.7 bits (212), Expect = 1e-17
 Identities = 82/489 (16%), Positives = 164/489 (33%), Gaps = 70/489 (14%)

Query: 105 KNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGN 164
           +    L+++ N I       +  LS LR+L I +N++   L    F    +L +  +  N
Sbjct: 21  QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHN 79

Query: 165 KLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLK 224
           KL                +  H                +L++L+L  +    L   +   
Sbjct: 80  KLV--------------KISCHPT-------------VNLKHLDLSFNAFDALPICKEFG 112

Query: 225 SAFQLKFLDLGLNQFH-GQITDLTKVTQLLFLSVHSNNMSGPLPLIS-SNLVYLDLSNNS 282
           +  QLKFL L         +  +  +     L V               +     L    
Sbjct: 113 NMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVF 172

Query: 283 FSGSVSHYLCY------------RINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILEL 330
            +    H++               I             + L     +  +S   L  +E 
Sbjct: 173 PTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIET 232

Query: 331 SNNKFTGKLPNSLGSLT---SLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNI 387
           + N F   L     +     S+  + L           S  +  AL    V  + F G  
Sbjct: 233 TWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFP 291

Query: 388 PTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMV 447
            ++  E FS M +     +            ++    LD ++N L  T+ +   ++T + 
Sbjct: 292 QSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTEL- 350

Query: 448 AANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIP 507
                     + L L ++    L++ A + ++         +  +++ D+S+N+++    
Sbjct: 351 ----------ETLILQMNQLKELSKIAEMTTQ---------MKSLQQLDISQNSVSYDEK 391

Query: 508 LEM-TNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNH 566
               +  K+  SLN S N  T  I   +     ++ +D   N++   IP+ +  L +L  
Sbjct: 392 KGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIK-SIPKQVVKLEALQE 448

Query: 567 LNLSNNKLT 575
           LN+++N+L 
Sbjct: 449 LNVASNQLK 457

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 84.5 bits (209), Expect = 2e-17
 Identities = 85/423 (20%), Positives = 144/423 (34%), Gaps = 54/423 (12%)

Query: 3   HLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASL-------CNLK 55
            LEYL L +NKL   I      NL  +     + +  P  +   +M+ L        +L+
Sbjct: 70  ELEYLDLSHNKLV-KISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLE 128

Query: 56  SINLRGVHLSQEISEILNIFSGCVS---------IELESLDLRSSSISGHLTDQLGQFKN 106
             ++  +        +L +                  ESL +   +            K 
Sbjct: 129 KSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKT 188

Query: 107 LDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFS-----------NLTK 155
           + NL+L+N   V    +    LS L  LQ      N TL+ I  +             T 
Sbjct: 189 VANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTT 248

Query: 156 LSWFRVGGNKLTLEVRHDWIP--PFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSG 213
           + +F +   KL  ++           L AL  H            +  +    +N+ N  
Sbjct: 249 VWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFT 308

Query: 214 MSDL--FPIRFLKSAFQLKFLDLGLNQFHGQITDLT-----KVTQLLFLSVHSNNMSGPL 266
           +S      +           LD   N     +TD        +T+L  L +  N +   L
Sbjct: 309 VSGTRMVHMLCPSKISPFLHLDFSNN----LLTDTVFENCGHLTELETLILQMNQLKE-L 363

Query: 267 PLIS------SNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWM 320
             I+       +L  LD+S NS S       C   +  KSL+ L +  N L   I  C  
Sbjct: 364 SKIAEMTTQMKSLQQLDISQNSVSYDEKKGDC---SWTKSLLSLNMSSNILTDTIFRCLP 420

Query: 321 SYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGE 380
               +++L+L +NK    +P  +  L +L  L +  N+L           T+L+ + +  
Sbjct: 421 P--RIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHT 477

Query: 381 NEF 383
           N +
Sbjct: 478 NPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 83.4 bits (206), Expect = 5e-17
 Identities = 57/381 (14%), Positives = 120/381 (31%), Gaps = 29/381 (7%)

Query: 82  ELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSL--GHLSNLRVLQIYNN 139
           +L  L +  + I           + L+ LDL++N +       +      NL+ L +  N
Sbjct: 46  KLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKL-----VKISCHPTVNLKHLDLSFN 100

Query: 140 KLNGTLSEIHFSNLTKLSWFRVGGNKLT-LEVRHDWIPPFQLVALGFHNCYVGSRFPQWL 198
             +       F N+++L +  +    L    V          V L     Y     P+ L
Sbjct: 101 AFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGL 160

Query: 199 HSQKHLQ-YLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQITDL----------- 246
                   ++    +          +K+   L+  ++       + +             
Sbjct: 161 QDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNP 220

Query: 247 -TKVTQLLFLSVHSNNMSGPLPLIS-SNLVYLDLSNNSFSGS-VSHYLCYRINEPKSLIG 303
                 L  +    N+    L L+  + + Y  +SN    G        Y     K+L  
Sbjct: 221 KLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSI 280

Query: 304 LKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTI 363
            ++  +         +  + N+ I   + +            ++  + L    N L+ T+
Sbjct: 281 HQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTV 340

Query: 364 PVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMV---VLILRSNNFHGPLPTRLCD-L 419
             +  + T LE+L +  N+    +        ++M     L +  N+         C   
Sbjct: 341 FENCGHLTELETLILQMNQLK-ELSKIAE-MTTQMKSLQQLDISQNSVSYDEKKGDCSWT 398

Query: 420 AFLQILDLADNNLFGTIPKCI 440
             L  L+++ N L  TI +C+
Sbjct: 399 KSLLSLNMSSNILTDTIFRCL 419

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 78.4 bits (193), Expect = 2e-15
 Identities = 72/442 (16%), Positives = 136/442 (30%), Gaps = 66/442 (14%)

Query: 3   HLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGV 62
            L  L + +N++Q  +D         +  LDLS N                L  I+    
Sbjct: 46  KLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHN---------------KLVKISCH-- 87

Query: 63  HLSQEISEILNIFSGCVSIELESLDLRSSSI-SGHLTDQLGQFKNLDNLDLANNSIVGPI 121
                               L+ LDL  ++  +  +  + G    L  L L+   +    
Sbjct: 88  PTVN----------------LKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSS 131

Query: 122 PQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQLV 181
              + HL+  +VL +               +    S        L +    +    F L 
Sbjct: 132 VLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTES--------LHIVFPTNKEFHFIL- 182

Query: 182 ALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLN-QFH 240
                +  V +     L + K +   N  +  +S L  ++       L   ++       
Sbjct: 183 -----DVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSF 237

Query: 241 GQITDLTKVTQLLFLSVHSNNMSGPLPLISSN--------LVYLDLSNNSFSGSVSHYLC 292
            +I  L   T + + S+ +  + G L     +        L    + ++ F    S    
Sbjct: 238 IRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQS---- 293

Query: 293 YRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWL 352
           Y      ++       +  +     C         L+ SNN  T  +  + G LT L  L
Sbjct: 294 YIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETL 353

Query: 353 LLGKNRLS--GTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHG 410
           +L  N+L     I        +L+ LD+ +N    +           ++ L + SN    
Sbjct: 354 ILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTD 413

Query: 411 PLPTRLCDLAFLQILDLADNNL 432
            +   L     +++LDL  N +
Sbjct: 414 TIFRCL--PPRIKVLDLHSNKI 433

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 63.3 bits (154), Expect = 1e-10
 Identities = 45/241 (18%), Positives = 91/241 (37%), Gaps = 10/241 (4%)

Query: 3   HLEYLSLRNNKLQGTIDSEAL-GNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRG 61
            + Y S+ N KLQG +D      + TS+  L +          P+S        ++N++ 
Sbjct: 248 TVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYE-IFSNMNIKN 306

Query: 62  VHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSI--VG 119
             +S      +   S         LD  ++ ++  + +  G    L+ L L  N +  + 
Sbjct: 307 FTVSGTRMVHMLCPSKISP--FLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELS 364

Query: 120 PIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQ 179
            I +    + +L+ L I  N ++    +   S    L    +  N LT  +      P +
Sbjct: 365 KIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRC--LPPR 422

Query: 180 LVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQF 239
           +  L  H+  +    P+ +   + LQ LN+ ++ +  + P         L+ + L  N +
Sbjct: 423 IKVLDLHSNKI-KSIPKQVVKLEALQELNVASNQLKSV-PDGIFDRLTSLQKIWLHTNPW 480

Query: 240 H 240
            
Sbjct: 481 D 481

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 57.6 bits (139), Expect = 7e-09
 Identities = 56/331 (16%), Positives = 94/331 (28%), Gaps = 36/331 (10%)

Query: 269 ISSNLVYLDLSNNSFS----GSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQN 324
           +S     L++S N  S      +             L  L +  N +Q      +   Q 
Sbjct: 19  LSQKTTILNISQNYISELWTSDILSL--------SKLRILIISHNRIQYLDISVFKFNQE 70

Query: 325 LEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVS--LKNCTALESLDVGENE 382
           LE L+LS+NK   K+        +L  L L  N     +P+     N + L+ L +    
Sbjct: 71  LEYLDLSHNKLV-KIS--CHPTVNLKHLDLSFNAFD-ALPICKEFGNMSQLKFLGLSTTH 126

Query: 383 FVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQI-LDLADNNLFGTIPKCIN 441
              +            V+L+L         P  L D     + +    N  F  I     
Sbjct: 127 LEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSV 186

Query: 442 NITGMV----------AANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNL 491
                +                  S             LT      +    I   +++  
Sbjct: 187 KTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWH 246

Query: 492 VKETDVSRNNLT-------KSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESID 544
                 S +N+        +      T+LKA        + F            ++   +
Sbjct: 247 TTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKN 306

Query: 545 FSVNQLSGEIPQSMSNLMSLNHLNLSNNKLT 575
           F+V+          S +    HL+ SNN LT
Sbjct: 307 FTVSGTRMVHMLCPSKISPFLHLDFSNNLLT 337

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 54.5 bits (131), Expect = 8e-08
 Identities = 42/281 (14%), Positives = 88/281 (31%), Gaps = 21/281 (7%)

Query: 324 NLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEF 383
              IL +S N  +    + + SL+ L  L++  NR+        K    LE LD+  N+ 
Sbjct: 22  KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKL 81

Query: 384 VGNIPTWTGERFSRMVVLILRSNNFHG-PLPTRLCDLAFLQILDLADNNLFGTIPKCINN 442
              I          +  L L  N F   P+     +++ L+ L L+  +L  +    I +
Sbjct: 82  -VKISC---HPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAH 137

Query: 443 ITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNL 502
           +           +  +        D               I +          DVS   +
Sbjct: 138 LNISKVLLVLGETYGEKEDPEGLQDFNTESL--------HIVFPTNKEFHFILDVSVKTV 189

Query: 503 TKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLM 562
                  +  +      ++  +           +  +L +I+ + N         +    
Sbjct: 190 ANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIR--ILQLVWHT 247

Query: 563 SLNHLNLSNNKLTGKIPSS------TQLQSFDASSFTGNDL 597
           ++ + ++SN KL G++         T L++        +  
Sbjct: 248 TVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF 288

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 48.3 bits (115), Expect = 6e-06
 Identities = 32/149 (21%), Positives = 68/149 (45%), Gaps = 9/149 (6%)

Query: 3   HLEYLSLRNNKLQG-TIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRG 61
            LE L L+ N+L+  +  +E    + S+ +LD+S N+          +   +L S+N+  
Sbjct: 349 ELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSS 408

Query: 62  VHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPI 121
             L+  I         C+   ++ LDL S+ I   +  Q+ + + L  L++A+N +    
Sbjct: 409 NILTDTIF-------RCLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVP 460

Query: 122 PQSLGHLSNLRVLQIYNNKLNGTLSEIHF 150
                 L++L+ + ++ N  + +   I +
Sbjct: 461 DGIFDRLTSLQKIWLHTNPWDCSCPRIDY 489

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 82.0 bits (203), Expect = 3e-17
 Identities = 57/289 (19%), Positives = 102/289 (35%), Gaps = 59/289 (20%)

Query: 1   FIHLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRI-PRSMASLCNLKSINL 59
                 L L +NKLQ ++       LT +++L LS N      +  +   S  +  + +L
Sbjct: 27  PSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSN-----GLSFKGCCSQSDFGTTSL 80

Query: 60  RGVHLSQ-EISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNL---DLANN 115
           + + LS   +  + + F G     LE LD + S++      +   F +L NL   D+++ 
Sbjct: 81  KYLDLSFNGVITMSSNFLGLEQ--LEHLDFQHSNLKQ--MSEFSVFLSLRNLIYLDISHT 136

Query: 116 SIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWI 175
                       LS+L VL++  N          F+ L  L++  +   +L        +
Sbjct: 137 HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ------L 190

Query: 176 PPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLG 235
                              P   +S   LQ LN+ ++    L      K    L+ LD  
Sbjct: 191 S------------------PTAFNSLSSLQVLNMSHNNFFSL-DTFPYKCLNSLQVLDYS 231

Query: 236 LNQFHGQITDLTKVTQLLFLSVHSNNMSGPLPLISSNLVYLDLSNNSFS 284
           LN        +    +                   S+L +L+L+ N F+
Sbjct: 232 LNH-------IMTSKKQELQHF------------PSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 70.0 bits (172), Expect = 3e-13
 Identities = 45/282 (15%), Positives = 90/282 (31%), Gaps = 54/282 (19%)

Query: 104 FKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLN-GTLSEIHFSNLTKLSWFRVG 162
             +   L+L +N +          L+ L  L + +N L+            T L +  + 
Sbjct: 27  PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86

Query: 163 GNKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRF 222
            N +        +         F                + L++L+  +S +  +     
Sbjct: 87  FNGVIT------MSS------NFLGL-------------EQLEHLDFQHSNLKQMSEFSV 121

Query: 223 LKSAFQLKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNNMSGPLPLISSNLVYLDLSNNS 282
             S   L +LD+                  +F  +             S+L  L ++ NS
Sbjct: 122 FLSLRNLIYLDISHTH-------TRVAFNGIFNGL-------------SSLEVLKMAGNS 161

Query: 283 FSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSY-QNLEILELSNNKFTGKLPN 341
           F  +    +     E ++L  L L    L+ ++     +   +L++L +S+N F      
Sbjct: 162 FQENFLPDI---FTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTF 217

Query: 342 SLGSLTSLIWLLLGKNRLSGTIPVSL--KNCTALESLDVGEN 381
               L SL  L    N +  T          ++L  L++ +N
Sbjct: 218 PYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 67.3 bits (165), Expect = 2e-12
 Identities = 59/281 (20%), Positives = 94/281 (33%), Gaps = 51/281 (18%)

Query: 298 PKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGK--LPNSLGSLTSLIWLLLG 355
           P S   L+L+ N LQ      +     L  L LS+N  + K     S    TSL +L L 
Sbjct: 27  PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86

Query: 356 KNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTR 415
            N +  T+  +      LE LD   +                ++ L +   +        
Sbjct: 87  FNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI 145

Query: 416 LCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKAS 475
              L+ L++L +A N+                  + FT                LT    
Sbjct: 146 FNGLSSLEVLKMAGNSFQENFL-----------PDIFTELRN------------LTF--- 179

Query: 476 VVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEM-TNLKATQSLNFSHNSFTGRIPESI 534
                        L+L      S+  L   +      +L + Q LN SHN+F        
Sbjct: 180 -------------LDL------SQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY 219

Query: 535 GAMRSLESIDFSVNQLSGEIPQSMSNLM-SLNHLNLSNNKL 574
             + SL+ +D+S+N +     Q + +   SL  LNL+ N  
Sbjct: 220 KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 65.8 bits (161), Expect = 7e-12
 Identities = 37/164 (22%), Positives = 62/164 (37%), Gaps = 6/164 (3%)

Query: 271 SNLVYLDLSNNSFSGSVSHYLCYRINEP-KSLIGLKLKDNSLQGEIPDCWMSYQNLEILE 329
           + L  L LS+N  S       C + +    SL  L L  N +   +   ++  + LE L+
Sbjct: 52  TQLTKLSLSSNGLS---FKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLD 107

Query: 330 LSNNKFTGKLPNSL-GSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIP 388
             ++        S+  SL +LI+L +                ++LE L +  N F  N  
Sbjct: 108 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 167

Query: 389 TWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNL 432
                    +  L L         PT    L+ LQ+L+++ NN 
Sbjct: 168 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 211

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 64.6 bits (158), Expect = 2e-11
 Identities = 51/213 (23%), Positives = 85/213 (39%), Gaps = 16/213 (7%)

Query: 229 LKFLDLGLNQFHG-QITDLTKVTQLLFLSVHSNNMS-GPLPLIS----SNLVYLDLSNNS 282
              L+L  N+          K+TQL  LS+ SN +S       S    ++L YLDLS N 
Sbjct: 30  ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89

Query: 283 FSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDC--WMSYQNLEILELSNNKFTGKLP 340
                S++L         L  L  + ++L+ ++ +   ++S +NL  L++S+        
Sbjct: 90  VITMSSNFLGLE-----QLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAFN 143

Query: 341 NSLGSLTSLIWLLLGKNRLSGTI-PVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMV 399
                L+SL  L +  N       P        L  LD+ + +    +        S + 
Sbjct: 144 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQ 202

Query: 400 VLILRSNNFHGPLPTRLCDLAFLQILDLADNNL 432
           VL +  NNF          L  LQ+LD + N++
Sbjct: 203 VLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 235

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 64.3 bits (157), Expect = 2e-11
 Identities = 54/293 (18%), Positives = 85/293 (29%), Gaps = 67/293 (22%)

Query: 269 ISSNLVYLDLSNNSFS----GSVSHYLCYRINEPKSLIGLKLKDNSL--QGEIPDCWMSY 322
           I S+   L+L +N       G               L  L L  N L  +G         
Sbjct: 26  IPSSATRLELESNKLQSLPHGVFDKL--------TQLTKLSLSSNGLSFKGCCSQSDFGT 77

Query: 323 QNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSL-KNCTALESLDVGEN 381
            +L+ L+LS N     + ++   L  L  L    + L      S+  +   L  LD+   
Sbjct: 78  TSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT 136

Query: 382 EFVGNIPTWTGERFSRMVVLILRSNNF-HGPLPTRLCDLAFLQILDLADNNLFGTIPKCI 440
                         S + VL +  N+F    LP    +L  L  LDL+   L        
Sbjct: 137 HTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL-------- 187

Query: 441 NNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRN 500
                 ++  +F   S             L                  LN+      S N
Sbjct: 188 ----EQLSPTAFNSLSS------------LQV----------------LNM------SHN 209

Query: 501 NLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESI--GAMRSLESIDFSVNQLS 551
           N           L + Q L++S N       +        SL  ++ + N  +
Sbjct: 210 NFFSLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 60.0 bits (146), Expect = 5e-10
 Identities = 46/257 (17%), Positives = 80/257 (31%), Gaps = 54/257 (21%)

Query: 324 NLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLS--GTIPVSLKNCTALESLDVGEN 381
           +   LEL +NK           LT L  L L  N LS  G    S    T+L+ LD+  N
Sbjct: 29  SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88

Query: 382 EFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRL-CDLAFLQILDLADNNLFGTIPKCI 440
             V  + +       ++  L  + +N        +   L  L  LD++  +         
Sbjct: 89  G-VITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT-RVAF--- 142

Query: 441 NNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRN 500
                      F   S             L                  L +      + N
Sbjct: 143 --------NGIFNGLSS------------LEV----------------LKM------AGN 160

Query: 501 NLTKSIPLEM-TNLKATQSLNFSHNSFTGRIPESI-GAMRSLESIDFSVNQLSGEIPQSM 558
           +  ++   ++ T L+    L+ S      ++  +   ++ SL+ ++ S N          
Sbjct: 161 SFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY 219

Query: 559 SNLMSLNHLNLSNNKLT 575
             L SL  L+ S N + 
Sbjct: 220 KCLNSLQVLDYSLNHIM 236

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 56.2 bits (136), Expect = 1e-08
 Identities = 48/278 (17%), Positives = 85/278 (30%), Gaps = 63/278 (22%)

Query: 324 NLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEF 383
           +   +  ++   T  +P  +   +S   L L  N+L           T L  L +  N  
Sbjct: 8   SGTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGL 64

Query: 384 -VGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINN 442
                 + +    + +  L L  N     + +    L  L+ LD              +N
Sbjct: 65  SFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQH-----------SN 112

Query: 443 ITGMVAANSFTRSSQ-QYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNN 501
           +  M   + F       YL                                   D+S  +
Sbjct: 113 LKQMSEFSVFLSLRNLIYL-----------------------------------DISHTH 137

Query: 502 LTKSIPLEM-TNLKATQSLNFSHNSFTGRIPESI-GAMRSLESIDFSVNQLSGEIPQSM- 558
                   +   L + + L  + NSF       I   +R+L  +D S  QL  ++  +  
Sbjct: 138 TR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAF 195

Query: 559 SNLMSLNHLNLSNNKLTGKIPSS-----TQLQSFDASS 591
           ++L SL  LN+S+N     + +        LQ  D S 
Sbjct: 196 NSLSSLQVLNMSHNNFF-SLDTFPYKCLNSLQVLDYSL 232

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 81.2 bits (201), Expect = 7e-17
 Identities = 67/387 (17%), Positives = 119/387 (30%), Gaps = 96/387 (24%)

Query: 52  CNLKSINLRGVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLD 111
           C+L+ +    + L  ++ +  ++           LDL+++ I+          KNL  L 
Sbjct: 31  CHLRVVQCSDLGLE-KVPK--DLPPD-----TALLDLQNNKITEIKDGDFKNLKNLHTLI 82

Query: 112 LANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVR 171
           L NN I    P +   L  L  L +  N+L   L E     L +L   RV  N++T    
Sbjct: 83  LINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMPKTLQEL---RVHENEIT---- 134

Query: 172 HDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNL-LNSGMSDLFPIRFLKSAFQLK 230
              +       L                    +  + L  N   S        +   +L 
Sbjct: 135 --KVRKSVFNGLN------------------QMIVVELGTNPLKSSGIENGAFQGMKKLS 174

Query: 231 FLDLGLNQFHGQITDLTKVTQLLFLSVHSNNMSGPLPLISSNLVYLDLSNNSFSGSVSHY 290
           ++ +           +T + Q L                  +L  L L  N  +      
Sbjct: 175 YIRIADTN-------ITTIPQGLP----------------PSLTELHLDGNKIT------ 205

Query: 291 LCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLI 350
                         K+   SL+G          NL  L LS N  +     SL +   L 
Sbjct: 206 --------------KVDAASLKG--------LNNLAKLGLSFNSISAVDNGSLANTPHLR 243

Query: 351 WLLLGKNRLSGTIPVSLKNCTALESLDVGEN--EFVGN---IPTWTGERFSRMVVLILRS 405
            L L  N+L   +P  L +   ++ + +  N    +G+    P     + +    + L S
Sbjct: 244 ELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFS 302

Query: 406 NNF-HGPLPTRL-CDLAFLQILDLADN 430
           N   +  +       +     + L + 
Sbjct: 303 NPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 73.1 bits (180), Expect = 3e-14
 Identities = 63/334 (18%), Positives = 115/334 (34%), Gaps = 89/334 (26%)

Query: 269 ISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEIL 328
           +  +   LDL NN  +                    ++KD   +          +NL  L
Sbjct: 50  LPPDTALLDLQNNKIT--------------------EIKDGDFKN--------LKNLHTL 81

Query: 329 ELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIP 388
            L NNK +   P +   L  L  L L KN+L   +P  +     L+ L V ENE    + 
Sbjct: 82  ILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEIT-KVR 137

Query: 389 TWTGERFSRMVVLILRSNNFH-GPLPTR-LCDLAFLQILDLADNNLFGTIPKCI------ 440
                  ++M+V+ L +N      +       +  L  + +AD N+  TIP+ +      
Sbjct: 138 KSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI-TTIPQGLPPSLTE 196

Query: 441 -----NNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKET 495
                N IT  V A S                                     LN + + 
Sbjct: 197 LHLDGNKIT-KVDAASLKG----------------------------------LNNLAKL 221

Query: 496 DVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSG--- 552
            +S N+++      + N    + L+ ++N    ++P  +   + ++ +    N +S    
Sbjct: 222 GLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGS 280

Query: 553 ---EIPQSMSNLMSLNHLNLSNNKLT-GKIPSST 582
                P   +   S + ++L +N +   +I  ST
Sbjct: 281 NDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPST 314

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 72.0 bits (177), Expect = 9e-14
 Identities = 54/296 (18%), Positives = 106/296 (35%), Gaps = 60/296 (20%)

Query: 3   HLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSI----- 57
           +L  L L NNK+   I   A   L  + RL LS N                LK +     
Sbjct: 77  NLHTLILINNKIS-KISPGAFAPLVKLERLYLSKN---------------QLKELPEKMP 120

Query: 58  -NLRGVHLSQ-EISEIL-NIFSGCVSIELESLDLRSSSI-SGHLTDQLGQFKNLDNL--- 110
             L+ + + + EI+++  ++F+G     +  ++L ++ + S  + +  G F+ +  L   
Sbjct: 121 KTLQELRVHENEITKVRKSVFNGLNQ--MIVVELGTNPLKSSGIEN--GAFQGMKKLSYI 176

Query: 111 DLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEV 170
            +A+ +I   IPQ L    +L  L +  NK+   +       L  L+   +  N ++   
Sbjct: 177 RIADTNITT-IPQGL--PPSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISAVD 232

Query: 171 RHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAF--- 227
                    L  L  +N  +  + P  L   K++Q + L N+ +S +    F    +   
Sbjct: 233 NGSLANTPHLRELHLNNNKL-VKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTK 291

Query: 228 --QLKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNNMSGPLPLISSNLVYLDLSNN 281
                 + L  N              + +  +  +     +         + L N 
Sbjct: 292 KASYSGVSLFSN-------------PVQYWEIQPSTFRC-VY----VRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 68.9 bits (169), Expect = 8e-13
 Identities = 59/321 (18%), Positives = 94/321 (29%), Gaps = 84/321 (26%)

Query: 271 SNLVYLDLSNN--------SFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSY 322
            NL  L L NN        +F+                L  L L  N L+ E+P+     
Sbjct: 76  KNLHTLILINNKISKISPGAFAPL------------VKLERLYLSKNQLK-ELPE--KMP 120

Query: 323 QNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRL-SGTIPV-SLKNCTALESLDVGE 380
           + L+ L +  N+ T    +    L  +I + LG N L S  I   + +    L  + + +
Sbjct: 121 KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIAD 180

Query: 381 NEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCI 440
                 IP         +  L L  N         L  L  L  L L+ N++        
Sbjct: 181 TNIT-TIPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI-------- 228

Query: 441 NNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRN 500
                 V   S   +              L E                L+L      + N
Sbjct: 229 ----SAVDNGSLANTPH------------LRE----------------LHL------NNN 250

Query: 501 NLTKSIPLEMTNLKATQSLNFSHNSFTG------RIPESIGAMRSLESIDFSVNQLS-GE 553
            L   +P  + + K  Q +   +N+ +         P       S   +    N +   E
Sbjct: 251 KLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWE 309

Query: 554 IPQSM-SNLMSLNHLNLSNNK 573
           I  S    +     + L N K
Sbjct: 310 IQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 56.2 bits (136), Expect = 1e-08
 Identities = 29/174 (16%), Positives = 58/174 (33%), Gaps = 43/174 (24%)

Query: 1   FIHLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLR 60
              L  L L  NK+   +D+ +L  L ++++L LS N                    ++ 
Sbjct: 191 PPSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFN--------------------SIS 229

Query: 61  GVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSI--- 117
            V             +      L  L L ++ +   +   L   K +  + L NN+I   
Sbjct: 230 AVD--------NGSLANTPH--LRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAI 278

Query: 118 ---VGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIH---FSNLTKLSWFRVGGNK 165
                  P      ++   + +++N +     EI    F  +   +  ++G  K
Sbjct: 279 GSNDFCPPGYNTKKASYSGVSLFSNPV--QYWEIQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 22/111 (19%), Positives = 42/111 (37%), Gaps = 16/111 (14%)

Query: 496 DVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIP 555
             S   L   +P ++     T  L+  +N  T         +++L ++    N++S   P
Sbjct: 37  QCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISP 93

Query: 556 QSMSNLMSLNHLNLSNNKLTGKIPSST------------QLQSFDASSFTG 594
            + + L+ L  L LS N+L  ++P               ++     S F G
Sbjct: 94  GAFAPLVKLERLYLSKNQLK-ELPEKMPKTLQELRVHENEITKVRKSVFNG 143

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 82.7 bits (204), Expect = 1e-16
 Identities = 60/319 (18%), Positives = 110/319 (34%), Gaps = 61/319 (19%)

Query: 265 PLPLISSNLVYLDLSNNSFSGSVSHY---LCYRINEPKSLIGLKLKDNSLQGEIPDCWMS 321
            + L  +N     LS NSF  ++S          ++ +         N     + +C + 
Sbjct: 2   SIMLPINNN--FSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLI- 58

Query: 322 YQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGEN 381
                 L+L+    +  LP++L     +  L + +N L  ++P    +   LE LD  +N
Sbjct: 59  -NQFSELQLNRLNLS-SLPDNLPP--QITVLEITQNALI-SLPELPAS---LEYLDACDN 110

Query: 382 EFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCIN 441
                +P    E  + +  L + +N     LP     L   + ++  +N L   +P+   
Sbjct: 111 RLS-TLP----ELPASLKHLDVDNNQLTM-LPELPALL---EYINADNNQL-TMLPELPT 160

Query: 442 NITGM-VAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRN 500
           ++  + V  N  T        LP                      +   +L +  DVS N
Sbjct: 161 SLEVLSVRNNQLTF-------LP----------------------ELPESL-EALDVSTN 190

Query: 501 NLTKSIPLEMTNL----KATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQ 556
            L  S+P          +         N  T  IPE+I ++    +I    N LS  I +
Sbjct: 191 LLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRE 248

Query: 557 SMSNLMSLNHLNLSNNKLT 575
           S+S   +    +      +
Sbjct: 249 SLSQQTAQPDYHGPRIYFS 267

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 78.5 bits (193), Expect = 2e-15
 Identities = 64/402 (15%), Positives = 129/402 (32%), Gaps = 42/402 (10%)

Query: 194 FPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQITDLTKV--TQ 251
           +       +         +    L     +    Q   L L        ++ L      Q
Sbjct: 29  YFSAWDKWEKQALPGENRNEAVSLLKECLIN---QFSELQLNRLN----LSSLPDNLPPQ 81

Query: 252 LLFLSVHSNNMSGPLPLISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSL 311
           +  L +  N +   LP + ++L YLD  +N  S ++          P SL  L + +N L
Sbjct: 82  ITVLEITQNALI-SLPELPASLEYLDACDNRLS-TLP-------ELPASLKHLDVDNNQL 132

Query: 312 QGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCT 371
              +P+       LE +   NN+ T  LP    SL  L    +  N+L+  +P   ++  
Sbjct: 133 T-MLPELP---ALLEYINADNNQLT-MLPELPTSLEVLS---VRNNQLT-FLPELPES-- 181

Query: 372 ALESLDVGENEFVGNIPTWTGERFS---RMVVLILRSNNFHGPLPTRLCDLAFLQILDLA 428
            LE+LDV  N    ++P             +    R N     +P  +  L     + L 
Sbjct: 182 -LEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILE 238

Query: 429 DNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEI 488
           DN L  +  +   +           R          +        A      E  +  ++
Sbjct: 239 DNPL-SSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQ-SDV 296

Query: 489 LNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHN-SFTGRIPESIGAMRSLESIDFSV 547
             +    +   +  T S  L+    + + +++  +   F  ++   +  + +   +    
Sbjct: 297 SQIWHAFEHEEHANTFSAFLD----RLSDTVSARNTSGFREQVAAWLEKLSASAELRQQS 352

Query: 548 NQLSGEIPQSMSNLMSLNHLNLSNNKLTGKIPSSTQLQSFDA 589
             ++ +  +S  + ++L   NL    L  +           A
Sbjct: 353 FAVAADATESCEDRVALTWNNLRKTLLVHQASEGLFDNDTGA 394

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 77.7 bits (191), Expect = 4e-15
 Identities = 59/302 (19%), Positives = 102/302 (33%), Gaps = 57/302 (18%)

Query: 80  SIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNN 139
           S+   S     S           +++         N  V  + + L  ++    LQ+   
Sbjct: 12  SLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECL--INQFSELQLNRL 69

Query: 140 KLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLH 199
            L+ +L +     +T L    +  N L                            P+   
Sbjct: 70  NLS-SLPDNLPPQITVLE---ITQNALI-------------------------SLPELP- 99

Query: 200 SQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQITDL-TKVTQLLFLSVH 258
               L+YL+  ++ +S L P         LK LD+  NQ    +T L      L +++  
Sbjct: 100 --ASLEYLDACDNRLSTL-PELPA----SLKHLDVDNNQ----LTMLPELPALLEYINAD 148

Query: 259 SNNMSGPLPLISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQG---EI 315
           +N ++  LP + ++L  L + NN         L +    P+SL  L +  N L+      
Sbjct: 149 NNQLTM-LPELPTSLEVLSVRNNQ--------LTFLPELPESLEALDVSTNLLESLPAVP 199

Query: 316 PDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALES 375
                S +         N+ T  +P ++ SL     ++L  N LS  I  SL   TA   
Sbjct: 200 VRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPD 258

Query: 376 LD 377
             
Sbjct: 259 YH 260

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 75.0 bits (184), Expect = 3e-14
 Identities = 57/308 (18%), Positives = 114/308 (37%), Gaps = 51/308 (16%)

Query: 55  KSINLRGVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTD-QLGQFKNLDNLDLA 113
            + +L        IS     +      + E   L   + +  ++  +         L L 
Sbjct: 9   NNFSLSQNSFYNTISGTYADYFSAWD-KWEKQALPGENRNEAVSLLKECLINQFSELQLN 67

Query: 114 NNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHD 173
             ++   +P +L     + VL+I  N L  +L E   ++L  L       N+L+      
Sbjct: 68  RLNLSS-LPDNLP--PQITVLEITQNAL-ISLPE-LPASLEYLD---ACDNRLS------ 113

Query: 174 WIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLD 233
                                P+   S   L++L++ N+ ++ L P    +    L++++
Sbjct: 114 -------------------TLPELPAS---LKHLDVDNNQLTML-P----ELPALLEYIN 146

Query: 234 LGLNQFHGQITDL-TKVTQLLFLSVHSNNMSGPLPLISSNLVYLDLSNNSFSGSVSHYLC 292
              NQ    +T L    T L  LSV +N ++  LP +  +L  LD+S N    S+     
Sbjct: 147 ADNNQ----LTMLPELPTSLEVLSVRNNQLTF-LPELPESLEALDVSTNLLE-SLPAVPV 200

Query: 293 YRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWL 352
              +  ++ I  + ++N +   IP+  +S      + L +N  + ++  SL   T+    
Sbjct: 201 RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDY 259

Query: 353 LLGKNRLS 360
              +   S
Sbjct: 260 HGPRIYFS 267

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 53.1 bits (127), Expect = 2e-07
 Identities = 27/106 (25%), Positives = 50/106 (47%), Gaps = 13/106 (12%)

Query: 486 DEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDF 545
           +   +L +  D   N L+ ++P    +L   + L+  +N  T  +PE       LE I+ 
Sbjct: 97  ELPASL-EYLDACDNRLS-TLPELPASL---KHLDVDNNQLT-MLPELPA---LLEYINA 147

Query: 546 SVNQLSGEIPQSMSNLMSLNHLNLSNNKLTGKIPSSTQLQSFDASS 591
             NQL+  +P+  ++L     L++ NN+LT        L++ D S+
Sbjct: 148 DNNQLT-MLPELPTSL---EVLSVRNNQLTFLPELPESLEALDVST 189

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 52.7 bits (126), Expect = 3e-07
 Identities = 55/420 (13%), Positives = 113/420 (26%), Gaps = 87/420 (20%)

Query: 3   HLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGV 62
               L L    L                             +P ++     +  + +   
Sbjct: 60  QFSELQLNRLNLS---------------------------SLPDNLPP--QITVLEITQN 90

Query: 63  HLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIP 122
            L        +         LE LD   + +S  L +      +L +LD+ NN +   +P
Sbjct: 91  ALISLPELPAS---------LEYLDACDNRLS-TLPELPA---SLKHLDVDNNQLTM-LP 136

Query: 123 QSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQLVA 182
           +       L  +   NN+L         ++L  LS   V  N+LT               
Sbjct: 137 ELPA---LLEYINADNNQLTMLPELP--TSLEVLS---VRNNQLT--------------- 173

Query: 183 LGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDL--FPIRFLKSAFQLKFLDLGLNQFH 240
                       P+   S   L+ L++  + +  L   P+R   S     F     N+  
Sbjct: 174 ----------FLPELPES---LEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRIT 220

Query: 241 GQITDLTKVTQLLFLSVHSNNMSGPLPLISSNLVYL-DLSNNSFSGSVSHYLCYRINEPK 299
               ++  +     + +  N +S  +    S      D        S+S      ++ P 
Sbjct: 221 HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPL 280

Query: 300 SLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRL 359
           +         + Q ++   W      E  E +N        + L    S       + ++
Sbjct: 281 ADAVTAWFPENKQSDVSQIW---HAFEHEEHANTFSA--FLDRLSDTVSARNTSGFREQV 335

Query: 360 SGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDL 419
           +  +     +    +       +   +        ++ +   +L      G        L
Sbjct: 336 AAWLEKLSASAELRQQSFAVAADATESCEDRVALTWNNLRKTLLVHQASEGLFDNDTGAL 395

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 51.1 bits (122), Expect = 8e-07
 Identities = 27/97 (27%), Positives = 48/97 (49%), Gaps = 13/97 (13%)

Query: 496 DVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIP 555
            ++R NL+ S+P  +        L  + N+    +PE      SLE +D   N+LS  +P
Sbjct: 65  QLNRLNLS-SLPDNL--PPQITVLEITQNALI-SLPELPA---SLEYLDACDNRLS-TLP 116

Query: 556 QSMSNLMSLNHLNLSNNKLTGKIPSS-TQLQSFDASS 591
           +  ++L    HL++ NN+LT  +P     L+  +A +
Sbjct: 117 ELPASL---KHLDVDNNQLT-MLPELPALLEYINADN 149

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 79.3 bits (196), Expect = 9e-16
 Identities = 63/394 (15%), Positives = 127/394 (32%), Gaps = 54/394 (13%)

Query: 1   FIHLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPR-SMASLCNLKSINL 59
              L  L   +N +  T+D   L   T+++ L    N     ++    +  L  L  +N 
Sbjct: 63  LTGLTKLICTSNNIT-TLD---LSQNTNLTYLACDSN-----KLTNLDVTPLTKLTYLNC 113

Query: 60  RGVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVG 119
               L++                L  L+   ++++      +     L  LD   N  + 
Sbjct: 114 DTNKLTKLDVSQNP--------LLTYLNCARNTLT---EIDVSHNTQLTELDCHLNKKIT 162

Query: 120 PIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLT-LEVRHDWIPPF 178
            +   +   + L  L    NK    ++E+  S    L+      N +T L++        
Sbjct: 163 KLD--VTPQTQLTTLDCSFNK----ITELDVSQNKLLNRLNCDTNNITKLDLNQ----NI 212

Query: 179 QLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQ 238
           QL  L   +  + +     +     L Y +   + +++L  +  L    +L  L      
Sbjct: 213 QLTFLDCSSNKL-TEID--VTPLTQLTYFDCSVNPLTEL-DVSTLS---KLTTLHCIQTD 265

Query: 239 FHGQITDLTKVTQLLFLSVHSNNMSGPLPLIS-SNLVYLDLSNNSFSGSVSHYLCYRINE 297
                 DLT  TQL++           L +   + L  LD      +  +       +++
Sbjct: 266 L--LEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGIT-ELD------LSQ 316

Query: 298 PKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKN 357
              L+ L L +  L  E+     +   L+ L   N         S+G + +L      + 
Sbjct: 317 NPKLVYLYLNNTELT-ELDVSHNT--KLKSLSCVNAHIQ-DFS-SVGKIPALNNNFEAEG 371

Query: 358 RLSGTIPVSLKNCTALESLDVGENEFVGNIPTWT 391
           +       +L N +   ++     +  GN     
Sbjct: 372 QTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIE 405

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 79.3 bits (196), Expect = 1e-15
 Identities = 73/351 (20%), Positives = 121/351 (34%), Gaps = 44/351 (12%)

Query: 83  LESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLN 142
           L SLD  +SSI+      + +   L  L   +N+I       L   +NL  L   +NK  
Sbjct: 44  LTSLDCHNSSITD--MTGIEKLTGLTKLICTSNNITTL---DLSQNTNLTYLACDSNK-- 96

Query: 143 GTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQK 202
             L+ +  + LTKL++     NKLT       +   Q   L + NC   +     +    
Sbjct: 97  --LTNLDVTPLTKLTYLNCDTNKLTK------LDVSQNPLLTYLNCARNTLTEIDVSHNT 148

Query: 203 HLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNNM 262
            L  L+   +       +       QL  LD   N+      D+++   L  L+  +NN+
Sbjct: 149 QLTELDCHLNKKITKLDVTPQT---QLTTLDCSFNKITE--LDVSQNKLLNRLNCDTNNI 203

Query: 263 SGPLPLIS-SNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMS 321
           +  L L     L +LD S+N  +  +       +     L       N L  E+    +S
Sbjct: 204 TK-LDLNQNIQLTFLDCSSNKLT-EID------VTPLTQLTYFDCSVNPLT-ELDVSTLS 254

Query: 322 YQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGEN 381
              L  L              L   T LI+      R    + V+  + T L  LD    
Sbjct: 255 --KLTTLHCIQTDLLE---IDLTHNTQLIYFQAEGCRKIKELDVT--HNTQLYLLDCQAA 307

Query: 382 EFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNL 432
                I      +  ++V L L +      L   +     L+ L   + ++
Sbjct: 308 ----GITELDLSQNPKLVYLYLNNTELTE-LD--VSHNTKLKSLSCVNAHI 351

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 72.8 bits (179), Expect = 1e-13
 Identities = 67/396 (16%), Positives = 122/396 (30%), Gaps = 64/396 (16%)

Query: 202 KHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNN 261
             L  L+  NS ++D+  I  L     L  L    N       DL++ T L +L+  SN 
Sbjct: 42  ATLTSLDCHNSSITDMTGIEKLTG---LTKLICTSNNI--TTLDLSQNTNLTYLACDSNK 96

Query: 262 MSGPLPLISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMS 321
           ++       + L YL+   N  +          +++   L  L    N+L  EI      
Sbjct: 97  LTNLDVTPLTKLTYLNCDTNKLTKLD-------VSQNPLLTYLNCARNTLT-EIDVS--H 146

Query: 322 YQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGEN 381
              L  L+   NK   KL   +   T L  L    N+++  + VS      L  L+   N
Sbjct: 147 NTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKIT-ELDVS--QNKLLNRLNCDTN 201

Query: 382 EFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCIN 441
               NI      +  ++  L   SN     +   +  L  L   D + N L   +     
Sbjct: 202 ----NITKLDLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPL-TELDVSTL 253

Query: 442 NITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNN 501
                        S    L                      +   ++ +  +        
Sbjct: 254 -------------SKLTTLHC----------------IQTDLLEIDLTHNTQLIYFQAEG 284

Query: 502 LTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNL 561
             K   L++T+      L+      T      +     L  +  +  +L+ E+   +S+ 
Sbjct: 285 CRKIKELDVTHNTQLYLLDCQAAGIT---ELDLSQNPKLVYLYLNNTELT-ELD--VSHN 338

Query: 562 MSLNHLNLSNNKLTGKIPSSTQLQSFDASSFTGNDL 597
             L  L+  N  +     S  ++ + + +       
Sbjct: 339 TKLKSLSCVNAHIQ-DFSSVGKIPALNNNFEAEGQT 373

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 71.6 bits (176), Expect = 2e-13
 Identities = 60/331 (18%), Positives = 112/331 (33%), Gaps = 42/331 (12%)

Query: 105 KNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGN 164
            N  +   A   +      S   L+ L  L  +N+ +   ++ I    LT L+      N
Sbjct: 18  DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT-DMTGI--EKLTGLTKLICTSN 74

Query: 165 KLTLEVRHDWIPPFQLVALGFHNCYVG--SRFPQWLHSQKHLQYLNLLNSGMSDLFPIRF 222
            +T       +   Q   L +  C     +     +     L YLN   + ++ L  +  
Sbjct: 75  NITT------LDLSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTKL-DVSQ 125

Query: 223 LKSAFQLKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNNMSGPLPLIS-SNLVYLDLSNN 281
                 L +L+   N       D++  TQL  L  H N     L +   + L  LD S N
Sbjct: 126 NPL---LTYLNCARNTL--TEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFN 180

Query: 282 SFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPN 341
             +          +++ K L  L    N++  ++         L  L+ S+NK T ++  
Sbjct: 181 KITE-------LDVSQNKLLNRLNCDTNNIT-KLDLN--QNIQLTFLDCSSNKLT-EID- 228

Query: 342 SLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVL 401
            +  LT L +     N L+  + VS    + L +L   +     ++        ++++  
Sbjct: 229 -VTPLTQLTYFDCSVNPLT-ELDVS--TLSKLTTLHCIQT----DLLEIDLTHNTQLIYF 280

Query: 402 ILRSNNFHGPLPTRLCDLAFLQILDLADNNL 432
                     L   +     L +LD     +
Sbjct: 281 QAEGCRKIKELD--VTHNTQLYLLDCQAAGI 309

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 79.9 bits (197), Expect = 9e-16
 Identities = 66/396 (16%), Positives = 130/396 (32%), Gaps = 48/396 (12%)

Query: 3   HLEYLSLRNNKLQGTIDSEALGNL-TSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRG 61
            L +L L   K +  +D   + +L  S   LDL       G       SL    +  L  
Sbjct: 147 KLTFLGLSAAKFR-QLDLLPVAHLHLSCILLDLVSYHIKGG----ETESLQIPNTTVLHL 201

Query: 62  VHLS-QEISEILN-IFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVG 119
           V       S  +N   +    ++L ++ L   +    +T      +    L++    I  
Sbjct: 202 VFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHI-- 259

Query: 120 PIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQ 179
                    +    ++++       +  ++  NLT              E  +       
Sbjct: 260 -------ETTWKCSVKLFQFFWPRPVEYLNIYNLTIT------ERIDREEFTYSETALKS 306

Query: 180 LVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQF 239
           L+     N                +    L  S    +  +     +    FL+   N  
Sbjct: 307 LMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPS-SFTFLNFTQN-- 363

Query: 240 HGQITDL-----TKVTQLLFLSVHSNNMSGPLPLISS------NLVYLDLSNNSFSGSVS 288
               TD      + + +L  L +  N +      ++       +L  LD+S NS +    
Sbjct: 364 --VFTDSVFQGCSTLKRLQTLILQRNGLKN-FFKVALMTKNMSSLETLDVSLNSLNSHAY 420

Query: 289 HYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTS 348
              C      +S++ L L  N L G +  C      +++L+L NN+    +P  +  L +
Sbjct: 421 DRTC---AWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQA 474

Query: 349 LIWLLLGKNRLSGTIPV-SLKNCTALESLDVGENEF 383
           L  L +  N+L  ++P       T+L+ + + +N +
Sbjct: 475 LQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 73.0 bits (179), Expect = 1e-13
 Identities = 74/488 (15%), Positives = 147/488 (30%), Gaps = 72/488 (14%)

Query: 106 NLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNK 165
               L L+ NSI       +  LS LRVL++ +N++  +L    F     L +  V  N 
Sbjct: 53  RTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHN- 110

Query: 166 LTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKS 225
                        +L  +                    L++L+L  +    L   +   +
Sbjct: 111 -------------RLQNISCCP-------------MASLRHLDLSFNDFDVLPVCKEFGN 144

Query: 226 AFQLKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNNMSGPLP------LISSNLVYLDLS 279
             +L FL L   +F  +  DL  V  L    +  + +S  +       L   N   L L 
Sbjct: 145 LTKLTFLGLSAAKF--RQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLV 202

Query: 280 NNSFSGSVSHYLCYRIN-EPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGK 338
            +  S                 L  +KL D + Q  +       +   +L ++       
Sbjct: 203 FHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETT 262

Query: 339 LPNSLGSLTSLIWLLLGKNRLS----------GTIPVSLKNCTALESLDVGENEFVGNIP 388
              S+          +    +                S     +L    V    F+    
Sbjct: 263 WKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFL-FSK 321

Query: 389 TWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVA 448
                 F+ M + +L  ++            +    L+   N    ++ +     + +  
Sbjct: 322 EALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQ---GCSTLKR 378

Query: 449 ANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPL 508
             +                +                    ++ ++  DVS N+L      
Sbjct: 379 LQTLILQRNGLKNFFKVALMTKN-----------------MSSLETLDVSLNSLNSHAYD 421

Query: 509 EMTNLKAT-QSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHL 567
                  +   LN S N  TG +   +     ++ +D   N++   IP+ +++L +L  L
Sbjct: 422 RTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQEL 478

Query: 568 NLSNNKLT 575
           N+++N+L 
Sbjct: 479 NVASNQLK 486

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 71.8 bits (176), Expect = 3e-13
 Identities = 76/449 (16%), Positives = 147/449 (32%), Gaps = 84/449 (18%)

Query: 4   LEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVH 63
           L  L L +N+++ ++D         +  LD+S N                L++I+     
Sbjct: 78  LRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHN---------------RLQNIS----- 116

Query: 64  LSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSI-VGPIP 122
                                            +        +L +LDL+ N   V P+ 
Sbjct: 117 ------------------------------CCPMA-------SLRHLDLSFNDFDVLPVC 139

Query: 123 QSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQLVA 182
           +  G+L+ L  L +   K      ++    +  L    +  + ++  ++       Q+  
Sbjct: 140 KEFGNLTKLTFLGLSAAK----FRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPN 195

Query: 183 -----LGFHNCYVGSR-FPQWLHSQKHLQYLNL-LNSGMSDLFPIRFLKSAFQLKFLDLG 235
                L FH   + S      +++  HLQ  N+ LN            +       L++ 
Sbjct: 196 TTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVT 255

Query: 236 LNQFHGQITDLTKVTQLLF------LSVHSNNMSGPLPLISSNLVYLDLSNNSFSGSVSH 289
           L           K+ Q  +      L++++  ++  +           L +       + 
Sbjct: 256 LQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQ 315

Query: 290 YLCYRINEPKSLIG----LKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGS 345
              +      S+        L  +        C  S  +   L  + N FT  +     +
Sbjct: 316 VFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCST 375

Query: 346 LTSLIWLLLGKNRLSGTIPVS--LKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLIL 403
           L  L  L+L +N L     V+   KN ++LE+LDV  N    +    T      ++VL L
Sbjct: 376 LKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNL 435

Query: 404 RSNNFHGPLPTRLCDLAFLQILDLADNNL 432
            SN   G +   L     +++LDL +N +
Sbjct: 436 SSNMLTGSVFRCLPPK--VKVLDLHNNRI 462

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 71.8 bits (176), Expect = 3e-13
 Identities = 78/515 (15%), Positives = 158/515 (30%), Gaps = 96/515 (18%)

Query: 75  FSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSL--GHLSNLR 132
            S      L  L L  + I           ++L+ LD+++N +     Q++    +++LR
Sbjct: 72  ISFLSE--LRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRL-----QNISCCPMASLR 124

Query: 133 VLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQL--VALGFHNCYV 190
            L +  N  +       F NLTKL++  +   K   ++    +    L  + L   + ++
Sbjct: 125 HLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR-QLDLLPVAHLHLSCILLDLVSYHI 183

Query: 191 GSRFPQWLHSQKH------LQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQIT 244
                + L               +L +  ++             +K  D    +    ++
Sbjct: 184 KGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLS 243

Query: 245 DLTKVTQLLFLSVHSNNMSGP------LPLISSNLVYLDLSNNSFSGSVSHYLCYRINEP 298
           +LT+   LL +++     +               + YL++ N + +  +           
Sbjct: 244 ELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDR--------- 294

Query: 299 KSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNR 358
                          E      + ++L I  + N  F             +   +L  + 
Sbjct: 295 --------------EEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISD 340

Query: 359 LSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCD 418
                 V   + ++   L+  +N F                                   
Sbjct: 341 TPFIHMVCPPSPSSFTFLNFTQNVFTD-----------------SVFQGCST-------- 375

Query: 419 LAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVS 478
           L  LQ L L  N L     K       M +  +   S         D      E      
Sbjct: 376 LKRLQTLILQRNGL-KNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESI---- 430

Query: 479 EGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMR 538
                    +LNL      S N LT S+   +      + L+  +N     IP+ +  ++
Sbjct: 431 --------LVLNL------SSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQ 473

Query: 539 SLESIDFSVNQLSGEIPQSM-SNLMSLNHLNLSNN 572
           +L+ ++ + NQL   +P  +   L SL ++ L +N
Sbjct: 474 ALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 68.7 bits (168), Expect = 3e-12
 Identities = 69/368 (18%), Positives = 126/368 (34%), Gaps = 39/368 (10%)

Query: 1   FIHLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLR 60
            +HL  + L                + + + L L  +      +  +M S+  L  + L 
Sbjct: 168 HLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNM-SVNALGHLQLS 226

Query: 61  GVHLSQEISEILNIFSGCV--SIELESLDLRSSSISGHLTDQLGQFK--------NLDNL 110
            + L+ E  + L  F   +     L ++ L+    +   + +L QF         N+ NL
Sbjct: 227 NIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNL 286

Query: 111 DLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEV 170
            +           S   L +L +  + N        E  +S   +++   +  +      
Sbjct: 287 TITERIDREEFTYSETALKSLMIEHVKNQVFL-FSKEALYSVFAEMNIKMLSISDTPFIH 345

Query: 171 RHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRF-LKSAFQL 229
                 P     L F          Q   + K LQ L L  +G+ + F +    K+   L
Sbjct: 346 MVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSL 405

Query: 230 KFLDLGLNQFHGQITDLTKVTQLLFLSVHSNNMSGPLPLISSNLVYLDLSNNSFSGSVSH 289
           + LD+ LN  +    D                        + +++ L+LS+N  +GSV  
Sbjct: 406 ETLDVSLNSLNSHAYDR-------------------TCAWAESILVLNLSSNMLTGSVFR 446

Query: 290 YLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSL 349
            L      P  +  L L +N +   IP      Q L+ L +++N+           LTSL
Sbjct: 447 CL------PPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSL 499

Query: 350 IWLLLGKN 357
            ++ L  N
Sbjct: 500 QYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 41.4 bits (97), Expect = 8e-04
 Identities = 31/149 (20%), Positives = 68/149 (45%), Gaps = 9/149 (6%)

Query: 3   HLEYLSLRNNKLQG-TIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRG 61
            L+ L L+ N L+     +    N++S+  LD+SLN+       R+ A   ++  +NL  
Sbjct: 378 RLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSS 437

Query: 62  VHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPI 121
             L+  +         C+  +++ LDL ++ I   +   +   + L  L++A+N +    
Sbjct: 438 NMLTGSVFR-------CLPPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVP 489

Query: 122 PQSLGHLSNLRVLQIYNNKLNGTLSEIHF 150
                 L++L+ + +++N  + T   I +
Sbjct: 490 DGVFDRLTSLQYIWLHDNPWDCTCPGIRY 518

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 79.0 bits (195), Expect = 1e-15
 Identities = 52/279 (18%), Positives = 101/279 (36%), Gaps = 51/279 (18%)

Query: 79  VSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYN 138
           +S     L+L  + I     +     ++L+ L L+ N I      +   L+NL  L++++
Sbjct: 62  ISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121

Query: 139 NKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWL 198
           N+L  T+    F  L+KL    +  N +        IP +      F+            
Sbjct: 122 NRLT-TIPNGAFVYLSKLKELWLRNNPIE------SIPSY-----AFNRI---------- 159

Query: 199 HSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQITDLTKVTQLLFLSVH 258
                L+ L+L              +    L++L+L +     +I +LT + +L  L + 
Sbjct: 160 ---PSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPNLTPLIKLDELDLS 215

Query: 259 SNNMSGPLPLISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDC 318
            N+       +S+      +   SF G               L  L +  + +Q    + 
Sbjct: 216 GNH-------LSA------IRPGSFQG------------LMHLQKLWMIQSQIQVIERNA 250

Query: 319 WMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKN 357
           + + Q+L  + L++N  T    +    L  L  + L  N
Sbjct: 251 FDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 75.9 bits (187), Expect = 1e-14
 Identities = 54/252 (21%), Positives = 84/252 (33%), Gaps = 48/252 (19%)

Query: 324 NLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEF 383
           N  +L L  N+      NS   L  L  L L +N +      +      L +L++ +N  
Sbjct: 65  NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR- 123

Query: 384 VGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNI 443
           +  IP       S++  L LR+N            +  L+ LDL +      I       
Sbjct: 124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYIS------ 177

Query: 444 TGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLT 503
                  +F   S             L                  LNL      +  NL 
Sbjct: 178 -----EGAFEGLSN------------LRY----------------LNL------AMCNLR 198

Query: 504 KSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMS 563
             IP  +T L     L+ S N  +   P S   +  L+ +    +Q+      +  NL S
Sbjct: 199 -EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQS 256

Query: 564 LNHLNLSNNKLT 575
           L  +NL++N LT
Sbjct: 257 LVEINLAHNNLT 268

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 70.5 bits (173), Expect = 5e-13
 Identities = 54/245 (22%), Positives = 92/245 (37%), Gaps = 48/245 (19%)

Query: 3   HLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRI----PRSMASLCNLKSIN 58
           HLE L L  N ++ TI+  A   L +++ L+L  N     R+      +   L  LK + 
Sbjct: 89  HLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDN-----RLTTIPNGAFVYLSKLKELW 142

Query: 59  LRGVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNL---DLANN 115
           LR   +   I      F+   S  L  LDL       ++++  G F+ L NL   +LA  
Sbjct: 143 LRNNPIE-SIPS--YAFNRIPS--LRRLDLGELKRLSYISE--GAFEGLSNLRYLNLAMC 195

Query: 116 SIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWI 175
           ++   IP +L  L  L  L +  N L+  +    F  L  L    +  +++        I
Sbjct: 196 NLRE-IP-NLTPLIKLDELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQ------VI 246

Query: 176 PPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLG 235
                  L                  + L  +NL ++ ++ L P         L+ + L 
Sbjct: 247 ERNAFDNL------------------QSLVEINLAHNNLTLL-PHDLFTPLHHLERIHLH 287

Query: 236 LNQFH 240
            N ++
Sbjct: 288 HNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 69.0 bits (169), Expect = 1e-12
 Identities = 59/307 (19%), Positives = 102/307 (33%), Gaps = 78/307 (25%)

Query: 104 FKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGG 163
             N   L+L  N I      S  HL +L +LQ+  N +  T+    F+ L  L+   +  
Sbjct: 63  STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFD 121

Query: 164 NKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFL 223
           N+LT       IP                           L+ L L N+ +  + P    
Sbjct: 122 NRLT------TIPN------------------GAFVYLSKLKELWLRNNPIESI-PSYAF 156

Query: 224 KSAFQLKFLDLG-LNQFHGQITDLTKVTQLLFLSVHSNNMSGPLPLISSNLVYLDLSNNS 282
                L+ LDLG L +       L+ +++  F  +             SNL YL+L+  +
Sbjct: 157 NRIPSLRRLDLGELKR-------LSYISEGAFEGL-------------SNLRYLNLAMCN 196

Query: 283 FSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNS 342
                                          EIP+       L+ L+LS N  +   P S
Sbjct: 197 LR-----------------------------EIPN-LTPLIKLDELDLSGNHLSAIRPGS 226

Query: 343 LGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLI 402
              L  L  L + ++++      +  N  +L  +++  N     +P         +  + 
Sbjct: 227 FQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIH 285

Query: 403 LRSNNFH 409
           L  N ++
Sbjct: 286 LHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 65.9 bits (161), Expect = 2e-11
 Identities = 56/277 (20%), Positives = 96/277 (34%), Gaps = 52/277 (18%)

Query: 298 PKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKN 357
             +   L L +N +Q    + +   ++LEIL+LS N        +   L +L  L L  N
Sbjct: 63  STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122

Query: 358 RLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTR-L 416
           RL+     +    + L+ L +  N    +IP++   R   +  L L        +     
Sbjct: 123 RLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAF 181

Query: 417 CDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASV 476
             L+ L+ L+LA  NL   IP             + T   +            L E    
Sbjct: 182 EGLSNLRYLNLAMCNL-REIP-------------NLTPLIK------------LDE---- 211

Query: 477 VSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEM-TNLKATQSLNFSHNSFTGRIPESIG 535
                       L+L      S N+L+ +I       L   Q L    +        +  
Sbjct: 212 ------------LDL------SGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFD 252

Query: 536 AMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLSNN 572
            ++SL  I+ + N L+       + L  L  ++L +N
Sbjct: 253 NLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 58.6 bits (142), Expect = 3e-09
 Identities = 60/288 (20%), Positives = 96/288 (33%), Gaps = 64/288 (22%)

Query: 269 ISSNLVYLDLSNNSFS----GSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQN 324
           IS+N   L+L  N        S  H         + L  L+L  N ++      +    N
Sbjct: 62  ISTNTRLLNLHENQIQIIKVNSFKHL--------RHLEILQLSRNHIRTIEIGAFNGLAN 113

Query: 325 LEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSL-KNCTALESLDVGENEF 383
           L  LEL +N+ T     +   L+ L  L L  N +  +IP        +L  LD+GE + 
Sbjct: 114 LNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKR 172

Query: 384 VGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNI 443
           +  I     E  S +  L L   N    +P  L  L  L  LDL+ N+L           
Sbjct: 173 LSYISEGAFEGLSNLRYLNLAMCNLRE-IPN-LTPLIKLDELDLSGNHL----------- 219

Query: 444 TGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLT 503
              +   SF                                    L  +++  + ++ + 
Sbjct: 220 -SAIRPGSFQG----------------------------------LMHLQKLWMIQSQIQ 244

Query: 504 KSIPLEM-TNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQL 550
             I      NL++   +N +HN+ T    +    +  LE I    N  
Sbjct: 245 -VIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 6/86 (6%)

Query: 498 SRNNLTKSIPLEMTNL-KATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQ 556
            R NL   +P     +   T+ LN   N        S   +R LE +  S N +      
Sbjct: 51  VRKNLR-EVP---DGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIG 106

Query: 557 SMSNLMSLNHLNLSNNKLTGKIPSST 582
           + + L +LN L L +N+LT  IP+  
Sbjct: 107 AFNGLANLNTLELFDNRLT-TIPNGA 131

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 41.3 bits (97), Expect = 8e-04
 Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 6/94 (6%)

Query: 496 DVSRNNLTKSIPLEM-TNLKATQSLNFSHNSFTGRIPESI-GAMRSLESIDFS-VNQLSG 552
           ++  N LT +IP      L   + L   +N     IP      + SL  +D   + +LS 
Sbjct: 118 ELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSY 175

Query: 553 EIPQSMSNLMSLNHLNLSNNKLTGKIPSSTQLQS 586
               +   L +L +LNL+   L  +IP+ T L  
Sbjct: 176 ISEGAFEGLSNLRYLNLAMCNLR-EIPNLTPLIK 208

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 78.9 bits (195), Expect = 1e-15
 Identities = 75/412 (18%), Positives = 132/412 (32%), Gaps = 59/412 (14%)

Query: 27  TSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQE-ISEILNIFSGCVSIELES 85
             I  LD+      + R    +  L   + + L    L++    +I +      +  L  
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPA--LAE 60

Query: 86  LDLRSSSISG----HLTDQLGQFK-NLDNLDLANNSI----VGPIPQSLGHLSNLRVLQI 136
           L+LRS+ +       +   L      +  L L N  +     G +  +L  L  L+ L +
Sbjct: 61  LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHL 120

Query: 137 YNNKLNGT----LSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQ----LVALGFHNC 188
            +N L       L E       +L   ++    L+           +       L   N 
Sbjct: 121 SDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNN 180

Query: 189 YVGSRFPQWL-----HSQKHLQYLNLLN-----SGMSDLFPIRFLKSAFQLKFLDLGLNQ 238
            +     + L      S   L+ L L +         DL     + S   L+ L LG N+
Sbjct: 181 DINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLC--GIVASKASLRELALGSNK 238

Query: 239 FHGQ-ITDLTKV-----TQLLFLSVHSNNMS-------GPLPLISSNLVYLDLSNNSFSG 285
                + +L        ++L  L +    ++         +     +L  L L+ N    
Sbjct: 239 LGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGD 298

Query: 286 SVSHYLCYRINEP-KSLIGLKLKDNSLQGE----IPDCWMSYQNLEILELSNNKFTGK-- 338
             +  LC  + EP   L  L +K  S                + L  L++SNN+      
Sbjct: 299 EGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGV 358

Query: 339 --LPNSLGS-LTSLIWLLLGKNRLS----GTIPVSLKNCTALESLDVGENEF 383
             L   LG   + L  L L    +S     ++  +L    +L  LD+  N  
Sbjct: 359 RELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL 410

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 66.5 bits (163), Expect = 1e-11
 Identities = 53/332 (15%), Positives = 111/332 (33%), Gaps = 63/332 (18%)

Query: 79  VSIELESLDLRSSSIS-GHLTDQLGQFKNLDNLDLANNSI----VGPIPQSLGHLSNLRV 133
           +S++++SLD++   +S     + L   +    + L +  +       I  +L     L  
Sbjct: 1   MSLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAE 60

Query: 134 LQIYNNKLNG----TLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQLVALGFHNCY 189
           L + +N+L       + +   +   K+    +    LT            +++       
Sbjct: 61  LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGA---GC----GVLSSTLRTL- 112

Query: 190 VGSRFPQWLHSQKHLQYLNLLNSGMSD----LFPIRFLKSAFQLKFLDLGLNQFHGQITD 245
                         LQ L+L ++ + D    L     L    +L+ L L        ++ 
Sbjct: 113 ------------PTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCS----LSA 156

Query: 246 LTKVTQLLFLSVHSNNMSGPLPLISSNLVYLDLSNNSFSGSVSHYLCYRINEPK-SLIGL 304
                + L   + +            +   L +SNN  + +    LC  + +    L  L
Sbjct: 157 --ASCEPLASVLRAK----------PDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEAL 204

Query: 305 KLKDNSLQGE----IPDCWMSYQNLEILELSNNKFTGK-----LPNSLGSLTSLIWLLLG 355
           KL+   +  +    +     S  +L  L L +NK          P  L   + L  L + 
Sbjct: 205 KLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIW 264

Query: 356 KNRLS----GTIPVSLKNCTALESLDVGENEF 383
           +  ++    G +   L+   +L+ L +  NE 
Sbjct: 265 ECGITAKGCGDLCRVLRAKESLKELSLAGNEL 296

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 60.0 bits (146), Expect = 1e-09
 Identities = 79/415 (19%), Positives = 135/415 (32%), Gaps = 95/415 (22%)

Query: 3   HLEYLSLRNNKL--QGTID-SEALGNLTSISRLDLSLNT-GPEGRIPRSMASL---CNLK 55
            ++ LSL+N  L   G    S  L  L ++  L LS N  G  G        L   C L+
Sbjct: 86  KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLE 145

Query: 56  SINLRGVHLSQEISEIL-NIFSGCVSIELESLDLRSSSISG----HLTDQLGQFK-NLDN 109
            + L    LS    E L ++         + L + ++ I+      L   L      L+ 
Sbjct: 146 KLQLEYCSLSAASCEPLASVLRAKPD--FKELTVSNNDINEAGVRVLCQGLKDSPCQLEA 203

Query: 110 LDLANNSI----VGPIPQSLGHLSNLRVLQIYNNKLNGT----LSEIHFSNLTKLSWFRV 161
           L L +  +       +   +   ++LR L + +NKL       L        ++L    +
Sbjct: 204 LKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWI 263

Query: 162 GGNKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSD----L 217
               +T +             L            + L +++ L+ L+L  + + D    L
Sbjct: 264 WECGITAK---------GCGDLC-----------RVLRAKESLKELSLAGNELGDEGARL 303

Query: 218 FPIRFLKSAFQLKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNNMSGPLPLISSNLVYLD 277
                L+   QL+ L +            T      F SV + N           L+ L 
Sbjct: 304 LCETLLEPGCQLESLWVKSCS-------FTAACCSHFSSVLAQN---------RFLLELQ 347

Query: 278 LSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTG 337
           +SNN    +    LC  + +P S                        L +L L++   + 
Sbjct: 348 ISNNRLEDAGVRELCQGLGQPGS-----------------------VLRVLWLADCDVSD 384

Query: 338 K----LPNSLGSLTSLIWLLLGKNRLSGTIPVSL-----KNCTALESLDVGENEF 383
                L  +L +  SL  L L  N L     + L     +    LE L + +  +
Sbjct: 385 SSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYW 439

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 51.1 bits (123), Expect = 8e-07
 Identities = 43/333 (12%), Positives = 100/333 (30%), Gaps = 62/333 (18%)

Query: 269 ISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGE----IPDCWMSYQN 324
           +S ++  LD+     S +    L   +   +    ++L D  L       I         
Sbjct: 1   MSLDIQSLDIQCEELSDARWAELLPLL---QQCQVVRLDDCGLTEARCKDISSALRVNPA 57

Query: 325 LEILELSNNKFTGKLPNSLGSL-----TSLIWLLLGKNRLSGT----IPVSLKNCTALES 375
           L  L L +N+      + +          +  L L    L+G     +  +L+    L+ 
Sbjct: 58  LAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQE 117

Query: 376 LDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGT 435
           L + +N          G+   +++   L                  L+ L L   +L   
Sbjct: 118 LHLSDNLL--------GDAGLQLLCEGLLDPQCR------------LEKLQLEYCSLS-- 155

Query: 436 IPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKET 495
                  +  ++ A    +       L +  + I      V+ +G      ++  L    
Sbjct: 156 -AASCEPLASVLRAKPDFKE------LTVSNNDINEAGVRVLCQGLKDSPCQLEAL---- 204

Query: 496 DVSRNNLT----KSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAM-----RSLESIDFS 546
            +    +T    + +   + +  + + L    N         +          L ++   
Sbjct: 205 KLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIW 264

Query: 547 VNQLSGE----IPQSMSNLMSLNHLNLSNNKLT 575
              ++ +    + + +    SL  L+L+ N+L 
Sbjct: 265 ECGITAKGCGDLCRVLRAKESLKELSLAGNELG 297

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 49.2 bits (118), Expect = 3e-06
 Identities = 63/399 (15%), Positives = 117/399 (29%), Gaps = 100/399 (25%)

Query: 202 KHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNN 261
             +Q L++    +SD      L    Q + + L        +T+     + +  ++  N 
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCG----LTE--ARCKDISSALRVN- 55

Query: 262 MSGPLPLISSNLVYLDLSNNSFSGSVSHYLCYRINEPK-SLIGLKLKDNSLQGE----IP 316
                      L  L+L +N       H +   +  P   +  L L++  L G     + 
Sbjct: 56  ---------PALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLS 106

Query: 317 DCWMSYQNLEILELSNNKFTGKLPNSLGSL-----TSLIWLLLGKNRLSGT----IPVSL 367
               +   L+ L LS+N         L          L  L L    LS      +   L
Sbjct: 107 STLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVL 166

Query: 368 KNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDL 427
           +     + L V  N+          E   R++   L+ +               L+ L L
Sbjct: 167 RAKPDFKELTVSNNDI--------NEAGVRVLCQGLKDSPCQ------------LEALKL 206

Query: 428 ADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDE 487
               +         ++ G+VA+ +                  L E               
Sbjct: 207 ESCGVT---SDNCRDLCGIVASKAS-----------------LRE--------------- 231

Query: 488 ILNLV--KETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGR----IPESIGAMRSLE 541
            L L   K  DV    L   +    + L   ++L       T +    +   + A  SL+
Sbjct: 232 -LALGSNKLGDVGMAELCPGLLHPSSRL---RTLWIWECGITAKGCGDLCRVLRAKESLK 287

Query: 542 SIDFSVNQLSGEIPQSMSNLM-----SLNHLNLSNNKLT 575
            +  + N+L  E  + +   +      L  L + +   T
Sbjct: 288 ELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFT 326

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 46.1 bits (110), Expect = 3e-05
 Identities = 53/349 (15%), Positives = 105/349 (30%), Gaps = 66/349 (18%)

Query: 271 SNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGE----------IPDCWM 320
                + L +   + +    +   +    +L  L L+ N L              P C  
Sbjct: 28  QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSC-- 85

Query: 321 SYQNLEILELSNNKFTGK----LPNSLGSLTSLIWLLLGKNRLSGT-----IPVSLKNCT 371
               ++ L L N   TG     L ++L +L +L  L L  N L            L    
Sbjct: 86  ---KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQC 142

Query: 372 ALESLDVGENEFVGNIPTWTGERFSRM-------VVLILRSNNFHGPLPTRLCDL----- 419
            LE L +       ++   + E  + +         L + +N+ +      LC       
Sbjct: 143 RLEKLQLEYC----SLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSP 198

Query: 420 AFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSE 479
             L+ L L    +         ++ G+VA+ +  R       L L  + +     + +  
Sbjct: 199 CQLEALKLESCGV---TSDNCRDLCGIVASKASLRE------LALGSNKLGDVGMAELCP 249

Query: 480 GEAIEYDEILNLVKETDVSRNNLT----KSIPLEMTNLKATQSLNFSHNSFTGRIPESIG 535
           G       +  L     +    +T      +   +   ++ + L+ + N         + 
Sbjct: 250 GLLHPSSRLRTL----WIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLC 305

Query: 536 AM-----RSLESIDFSVNQLSGE----IPQSMSNLMSLNHLNLSNNKLT 575
                    LES+       +          ++    L  L +SNN+L 
Sbjct: 306 ETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLE 354

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 45.7 bits (109), Expect = 4e-05
 Identities = 38/191 (19%), Positives = 65/191 (34%), Gaps = 29/191 (15%)

Query: 3   HLEYLSLRNNKL--QGTID-SEALGNLTSISRLDLSLNT-GPEG--RIPRSMAS-LCNLK 55
            L  L +    +  +G  D    L    S+  L L+ N  G EG   +  ++    C L+
Sbjct: 257 RLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLE 316

Query: 56  SINLRGVHLS----QEISEILNIFSGCVSIELESLDLRSSSISG----HLTDQLGQF-KN 106
           S+ ++    +       S +L       +  L  L + ++ +       L   LGQ    
Sbjct: 317 SLWVKSCSFTAACCSHFSSVL-----AQNRFLLELQISNNRLEDAGVRELCQGLGQPGSV 371

Query: 107 LDNLDLANNSI----VGPIPQSLGHLSNLRVLQIYNNKLNGT----LSEIHFSNLTKLSW 158
           L  L LA+  +       +  +L    +LR L + NN L       L E        L  
Sbjct: 372 LRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQ 431

Query: 159 FRVGGNKLTLE 169
             +     + E
Sbjct: 432 LVLYDIYWSEE 442

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 76.3 bits (188), Expect = 7e-15
 Identities = 53/286 (18%), Positives = 94/286 (32%), Gaps = 65/286 (22%)

Query: 79  VSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYN 138
           +      L+L  ++I     D      +L+ L L  NSI      +   L++L  L++++
Sbjct: 73  IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132

Query: 139 NKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWL 198
           N L   +    F  L+KL    +  N +        IP +    +               
Sbjct: 133 NWLT-VIPSGAFEYLSKLRELWLRNNPIE------SIPSYAFNRV--------------- 170

Query: 199 HSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQITDLTKVTQLLFLSVH 258
                L  L+L      +       +  F LK+L+LG+      + +LT +  L  L + 
Sbjct: 171 ---PSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPNLTPLVGLEELEMS 226

Query: 259 SNNMS-------GPLPLISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSL 311
            N+           L     +L  L + N+  S  +         E  +  GL       
Sbjct: 227 GNHFPEIRPGSFHGLS----SLKKLWVMNSQVS-LI---------ERNAFDGLA------ 266

Query: 312 QGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKN 357
                       +L  L L++N  +    +    L  L+ L L  N
Sbjct: 267 ------------SLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 76.3 bits (188), Expect = 8e-15
 Identities = 51/252 (20%), Positives = 85/252 (33%), Gaps = 48/252 (19%)

Query: 324 NLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEF 383
           N   L L  N       ++   L  L  L LG+N +      +     +L +L++ +N  
Sbjct: 76  NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW- 134

Query: 384 VGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNI 443
           +  IP+   E  S++  L LR+N            +  L  LDL +      I       
Sbjct: 135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYIS------ 188

Query: 444 TGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLT 503
                  +F                                    L  +K  ++   N+ 
Sbjct: 189 -----EGAFEG----------------------------------LFNLKYLNLGMCNIK 209

Query: 504 KSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMS 563
             +P  +T L   + L  S N F    P S   + SL+ +    +Q+S     +   L S
Sbjct: 210 -DMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLAS 267

Query: 564 LNHLNLSNNKLT 575
           L  LNL++N L+
Sbjct: 268 LVELNLAHNNLS 279

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 72.5 bits (178), Expect = 1e-13
 Identities = 49/246 (19%), Positives = 82/246 (33%), Gaps = 22/246 (8%)

Query: 1   FIHLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRI----PRSMASLCNLKS 56
             +  YL+L  N +Q  I ++   +L  +  L L  N      I      +   L +L +
Sbjct: 74  PSNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRN-----SIRQIEVGAFNGLASLNT 127

Query: 57  INLRGVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLA-NN 115
           + L    L+  I      F       L  L LR++ I    +    +  +L  LDL    
Sbjct: 128 LELFDNWLT-VIPS--GAFEYLSK--LRELWLRNNPIESIPSYAFNRVPSLMRLDLGELK 182

Query: 116 SIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEI-HFSNLTKLSWFRVGGNKLTLEVRHDW 174
            +      +   L NL+ L +        + ++ + + L  L    + GN         +
Sbjct: 183 KLEYISEGAFEGLFNLKYLNLGMCN----IKDMPNLTPLVGLEELEMSGNHFPEIRPGSF 238

Query: 175 IPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDL 234
                L  L   N  V             L  LNL ++ +S L P         L  L L
Sbjct: 239 HGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSL-PHDLFTPLRYLVELHL 297

Query: 235 GLNQFH 240
             N ++
Sbjct: 298 HHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 70.2 bits (172), Expect = 8e-13
 Identities = 63/307 (20%), Positives = 101/307 (32%), Gaps = 78/307 (25%)

Query: 104 FKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGG 163
             N   L+L  N+I      +  HL +L VLQ+  N +   +    F+ L  L+   +  
Sbjct: 74  PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFD 132

Query: 164 NKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFL 223
           N LT+      IP                           L+ L L N+ +  + P    
Sbjct: 133 NWLTV------IPS------------------GAFEYLSKLRELWLRNNPIESI-PSYAF 167

Query: 224 KSAFQLKFLDLG-LNQFHGQITDLTKVTQLLFLSVHSNNMSGPLPLISSNLVYLDLSNNS 282
                L  LDLG L +       L  +++  F  +              NL YL+L    
Sbjct: 168 NRVPSLMRLDLGELKK-------LEYISEGAFEGL-------------FNLKYLNLGMC- 206

Query: 283 FSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNS 342
                       I +  +L  L                    LE LE+S N F    P S
Sbjct: 207 -----------NIKDMPNLTPLV------------------GLEELEMSGNHFPEIRPGS 237

Query: 343 LGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLI 402
              L+SL  L +  +++S     +     +L  L++  N    ++P         +V L 
Sbjct: 238 FHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELH 296

Query: 403 LRSNNFH 409
           L  N ++
Sbjct: 297 LHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 63.2 bits (154), Expect = 1e-10
 Identities = 40/168 (23%), Positives = 64/168 (38%), Gaps = 14/168 (8%)

Query: 269 ISSNLVYLDLSNNSFS----GSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQN 324
           I SN  YL+L  N+       +  H           L  L+L  NS++      +    +
Sbjct: 73  IPSNTRYLNLMENNIQMIQADTFRHL--------HHLEVLQLGRNSIRQIEVGAFNGLAS 124

Query: 325 LEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFV 384
           L  LEL +N  T     +   L+ L  L L  N +      +     +L  LD+GE + +
Sbjct: 125 LNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKL 184

Query: 385 GNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNL 432
             I     E    +  L L   N    +P  L  L  L+ L+++ N+ 
Sbjct: 185 EYISEGAFEGLFNLKYLNLGMCNIKD-MPN-LTPLVGLEELEMSGNHF 230

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 42.0 bits (99), Expect = 5e-04
 Identities = 24/115 (20%), Positives = 37/115 (32%), Gaps = 19/115 (16%)

Query: 496 DVSRNNLTKSIPLEM-TNLKATQSLNFSHNSFTGRIPESI-GAMRSLESIDFS-VNQLSG 552
           ++  N LT  IP      L   + L   +N     IP      + SL  +D   + +L  
Sbjct: 129 ELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEY 186

Query: 553 EIPQSMSNLMSLNHLNLSNNKLTGKIP-------------SSTQLQSFDASSFTG 594
               +   L +L +LNL    +   +P             S          SF G
Sbjct: 187 ISEGAFEGLFNLKYLNLGMCNIK-DMPNLTPLVGLEELEMSGNHFPEIRPGSFHG 240

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 73.9 bits (182), Expect = 2e-14
 Identities = 68/385 (17%), Positives = 117/385 (30%), Gaps = 115/385 (29%)

Query: 52  CNLKSINLRGVHLSQEISEI-LNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNL 110
           C+L+ +    + L      +   I           LDL+++ IS    D     ++L  L
Sbjct: 33  CHLRVVQCSDLGLK----AVPKEISPD-----TTLLDLQNNDISELRKDDFKGLQHLYAL 83

Query: 111 DLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEV 170
            L NN I     ++   L  L+ L I  N L   +     S+L +L   R+  N++    
Sbjct: 84  VLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLPSSLVEL---RIHDNRIRK-- 137

Query: 171 RHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQ-- 228
               +P      L                  +++  + +   G + L    F   AF   
Sbjct: 138 ----VPKGVFSGL------------------RNMNCIEM---GGNPLENSGFEPGAFDGL 172

Query: 229 -LKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNNMSGPLPLISSNLVYLDLSNNSFSGSV 287
            L +L +   +       LT + + L                   L  L L +N      
Sbjct: 173 KLNYLRISEAK-------LTGIPKDLP----------------ETLNELHLDHNKIQ--- 206

Query: 288 SHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLT 347
                             ++   L          Y  L  L L +N+       SL  L 
Sbjct: 207 -----------------AIELEDLLR--------YSKLYRLGLGHNQIRMIENGSLSFLP 241

Query: 348 SLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNN 407
           +L  L L  N+LS  +P  L +   L+ + +  N    NI       F  +   + R+  
Sbjct: 242 TLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTN----NITKVGVNDFCPVGFGVKRAY- 295

Query: 408 FHGPLPTRLCDLAFLQILDLADNNL 432
                            + L +N +
Sbjct: 296 --------------YNGISLFNNPV 306

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 70.4 bits (173), Expect = 3e-13
 Identities = 57/327 (17%), Positives = 102/327 (31%), Gaps = 91/327 (27%)

Query: 269 ISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEIL 328
           IS +   LDL NN  S                    +L+ +  +G         Q+L  L
Sbjct: 52  ISPDTTLLDLQNNDIS--------------------ELRKDDFKG--------LQHLYAL 83

Query: 329 ELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIP 388
            L NNK +     +   L  L  L + KN L   IP +L   ++L  L + +N     +P
Sbjct: 84  VLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIR-KVP 139

Query: 389 TWTGERFSRMVVLILRSNNF-HGPLPTRLCDLAFLQILDLADNNLFGTIPKCI------- 440
                    M  + +  N   +        D   L  L +++  L   IPK +       
Sbjct: 140 KGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKL-TGIPKDLPETLNEL 198

Query: 441 ----NNITGMVAANSFTRSSQ-QYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKET 495
               N I   +      R S+   L L                                 
Sbjct: 199 HLDHNKIQ-AIELEDLLRYSKLYRLGL--------------------------------- 224

Query: 496 DVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIP 555
               N +       ++ L   + L+  +N  + R+P  +  ++ L+ +    N ++ ++ 
Sbjct: 225 --GHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT-KVG 280

Query: 556 QSM-------SNLMSLNHLNLSNNKLT 575
            +              N ++L NN + 
Sbjct: 281 VNDFCPVGFGVKRAYYNGISLFNNPVP 307

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 69.3 bits (170), Expect = 7e-13
 Identities = 53/294 (18%), Positives = 102/294 (34%), Gaps = 57/294 (19%)

Query: 3   HLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSI----- 57
           HL  L L NNK+   I  +A   L  + +L +S N               +L  I     
Sbjct: 79  HLYALVLVNNKIS-KIHEKAFSPLRKLQKLYISKN---------------HLVEIPPNLP 122

Query: 58  -NLRGVHLSQ-EISEIL-NIFSGCVSIELESLDLRSSSISGHLTDQLGQFK--NLDNLDL 112
            +L  + +    I ++   +FSG  +  +  +++  + +  +   + G F    L+ L +
Sbjct: 123 SSLVELRIHDNRIRKVPKGVFSGLRN--MNCIEMGGNPLE-NSGFEPGAFDGLKLNYLRI 179

Query: 113 ANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRH 172
           +   + G IP+ L     L  L + +NK+   +        +KL    +G N++ +    
Sbjct: 180 SEAKLTG-IPKDL--PETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENG 235

Query: 173 DWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDL-----FPIRFLKSAF 227
                  L  L   N  + SR P  L   K LQ + L  + ++ +      P+ F     
Sbjct: 236 SLSFLPTLRELHLDNNKL-SRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRA 294

Query: 228 QLKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNNMSGPLPLISSNLVYLDLSNN 281
               + L  N              + +  V        +     + + +   N 
Sbjct: 295 YYNGISLFNN-------------PVPYWEVQPATFRC-VT----DRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 68.1 bits (167), Expect = 2e-12
 Identities = 60/346 (17%), Positives = 106/346 (30%), Gaps = 83/346 (23%)

Query: 3   HLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGV 62
               L L+NN +   +  +    L  +  L L  N                         
Sbjct: 55  DTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNN------------------------- 88

Query: 63  HLSQEISEI-LNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPI 121
               +IS+I    FS      L+ L +  + +            +L  L + +N I    
Sbjct: 89  ----KISKIHEKAFSPLRK--LQKLYISKNHLV---EIPPNLPSSLVELRIHDNRIRKVP 139

Query: 122 PQSLGHLSNLRVLQIYNNKL-NGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQL 180
                 L N+  +++  N L N       F  L KL++ R+   KLT       IP    
Sbjct: 140 KGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG------IPKDLP 192

Query: 181 VALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFH 240
                                + L  L+L ++ +  +  +  L    +L  L LG N   
Sbjct: 193 ---------------------ETLNELHLDHNKIQAI-ELEDLLRYSKLYRLGLGHN--- 227

Query: 241 GQITDLTK-----VTQLLFLSVHSNNMSG-PLPLIS-SNLVYLDLSNN---SFSGSVSHY 290
            QI  +       +  L  L + +N +S  P  L     L  + L  N       +    
Sbjct: 228 -QIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCP 286

Query: 291 LCYRINEPKSLIGLKLKDNSLQ-GEIPDCWMSY-QNLEILELSNNK 334
           + + +       G+ L +N +   E+         +   ++  N K
Sbjct: 287 VGFGVKRA-YYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 66.6 bits (163), Expect = 5e-12
 Identities = 51/260 (19%), Positives = 88/260 (33%), Gaps = 32/260 (12%)

Query: 324 NLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEF 383
           +  +L+L NN  +    +    L  L  L+L  N++S     +      L+ L + +N  
Sbjct: 55  DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHL 114

Query: 384 VGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNI 443
           V  IP       S +V L +  N            L  +  +++  N L  +        
Sbjct: 115 V-EIPP---NLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENS-------- 162

Query: 444 TGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLT 503
                  +F      YL +    +  LT           I  D    L  E  +  N + 
Sbjct: 163 --GFEPGAFDGLKLNYLRI---SEAKLTG----------IPKDLPETL-NELHLDHNKIQ 206

Query: 504 KSIPLEM-TNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLM 562
            +I LE          L   HN        S+  + +L  +    N+LS  +P  + +L 
Sbjct: 207 -AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLK 264

Query: 563 SLNHLNLSNNKLTGKIPSST 582
            L  + L  N +T K+  + 
Sbjct: 265 LLQVVYLHTNNIT-KVGVND 283

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 45.0 bits (107), Expect = 5e-05
 Identities = 21/109 (19%), Positives = 44/109 (40%), Gaps = 16/109 (14%)

Query: 498 SRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQS 557
           S   L  ++P E++    T  L+  +N  +    +    ++ L ++    N++S    ++
Sbjct: 41  SDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKA 97

Query: 558 MSNLMSLNHLNLSNNKLTGKIPSST------------QLQSFDASSFTG 594
            S L  L  L +S N L  +IP +             +++      F+G
Sbjct: 98  FSPLRKLQKLYISKNHLV-EIPPNLPSSLVELRIHDNRIRKVPKGVFSG 145

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 72.8 bits (179), Expect = 6e-14
 Identities = 60/281 (21%), Positives = 100/281 (35%), Gaps = 21/281 (7%)

Query: 79  VSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYN 138
           ++  ++SLDL ++ I+      L +  NL  L L +N I      S   L +L  L +  
Sbjct: 50  LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSY 109

Query: 139 NKLNGTLSEIHFSNLTKLSWFRVGGNKLT-LEVRHDWIPPFQLVALGFHNCYVGSRFP-Q 196
           N L   LS   F  L+ L++  + GN    L     +    +L  L   N    ++   +
Sbjct: 110 NYL-SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRK 168

Query: 197 WLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQITDLTKVTQLLFLS 256
                  L+ L +  S +      + LKS   +  L L + Q          + ++    
Sbjct: 169 DFAGLTFLEELEIDASDLQSY-EPKSLKSIQNVSHLILHMKQ-------HILLLEIFVDV 220

Query: 257 VHSNNMSGPLPLISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIP 316
             S        +    L   DL    FS  +S      + +  +   +K+ D SL  ++ 
Sbjct: 221 TSS--------VECLELRDTDLDTFHFS-ELSTGETNSLIKKFTFRNVKITDESLF-QVM 270

Query: 317 DCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKN 357
                   L  LE S N+           LTSL  + L  N
Sbjct: 271 KLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 72.1 bits (177), Expect = 1e-13
 Identities = 51/295 (17%), Positives = 99/295 (33%), Gaps = 44/295 (14%)

Query: 1   FIHLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRI----PRSMASLCNLKS 56
              ++ L L NN++   I +  L    ++  L L+ N      I      S +SL +L+ 
Sbjct: 51  TEAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSN-----GINTIEEDSFSSLGSLEH 104

Query: 57  INLRGVHLSQEISEILNIFSGCVSIELESLDLRSSSISG-HLTDQLGQFKNLDNLDLANN 115
           ++L   +LS  +S   + F    S  L  L+L  +       T        L  L + N 
Sbjct: 105 LDLSYNYLSN-LSS--SWFKPLSS--LTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNM 159

Query: 116 SIVGPIP-QSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDW 174
                I  +    L+ L  L+I  + L  +       ++  +S   +   +  L      
Sbjct: 160 DTFTKIQRKDFAGLTFLEELEIDASDLQ-SYEPKSLKSIQNVSHLILHMKQHIL------ 212

Query: 175 IPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRF--LKSAFQLKFL 232
           +                +   + L     L+  +L     S+L       L   F  + +
Sbjct: 213 LLE---------IFVDVTSSVECL----ELRDTDLDTFHFSELSTGETNSLIKKFTFRNV 259

Query: 233 DLGLNQFHGQITDLTKVTQLLFLSVHSNNMSGPLPLIS----SNLVYLDLSNNSF 283
            +        +  L +++ LL L    N +   +P       ++L  + L  N +
Sbjct: 260 KITDESLFQVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 68.6 bits (168), Expect = 1e-12
 Identities = 48/295 (16%), Positives = 100/295 (33%), Gaps = 48/295 (16%)

Query: 298 PKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKN 357
            +++  L L +N +            NL+ L L++N       +S  SL SL  L L  N
Sbjct: 51  TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN 110

Query: 358 RLSGTIPVSL-KNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTR- 415
            LS  +  S  K  ++L  L++  N +     T      +++ +L + + +    +  + 
Sbjct: 111 YLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKD 169

Query: 416 LCDLAFLQILDLADNNL-------FGTIPK------CINNITGMVAANSFTRSSQ-QYLP 461
              L FL+ L++  ++L         +I         +     ++       +S  + L 
Sbjct: 170 FAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECL- 227

Query: 462 LPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNF 521
                                      L          + L+      +      +++  
Sbjct: 228 --------------------------ELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKI 261

Query: 522 SHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSM-SNLMSLNHLNLSNNKLT 575
           +  S   ++ + +  +  L  ++FS NQL   +P  +   L SL  + L  N   
Sbjct: 262 TDESLF-QVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 61.7 bits (150), Expect = 2e-10
 Identities = 39/248 (15%), Positives = 92/248 (37%), Gaps = 31/248 (12%)

Query: 204 LQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQITDL-----TKVTQLLFLSVH 258
           ++ L+L N+ ++ +      +    L+ L L  N     I  +     + +  L  L + 
Sbjct: 54  VKSLDLSNNRITYISNSDL-QRCVNLQALVLTSNG----INTIEEDSFSSLGSLEHLDLS 108

Query: 259 SNNMSG-------PLPLISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSL 311
            N +S        PL     +L +L+L  N +  ++     +       L  L++ +   
Sbjct: 109 YNYLSNLSSSWFKPLS----SLTFLNLLGNPYK-TLGETSLFS--HLTKLQILRVGNMDT 161

Query: 312 QGEIPDCWMSY-QNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNC 370
             +I     +    LE LE+  +      P SL S+ ++  L+L   +    + + +   
Sbjct: 162 FTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVT 221

Query: 371 TALESLDVGENEFVGN----IPTWTGERFSRMVVL--ILRSNNFHGPLPTRLCDLAFLQI 424
           +++E L++ + +        + T       +      +  ++     +   L  ++ L  
Sbjct: 222 SSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLE 281

Query: 425 LDLADNNL 432
           L+ + N L
Sbjct: 282 LEFSRNQL 289

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 50.1 bits (120), Expect = 1e-06
 Identities = 24/144 (16%), Positives = 60/144 (41%), Gaps = 10/144 (6%)

Query: 4   LEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPR-SMASLCNLKSINLRGV 62
           LE L +  + LQ + + ++L ++ ++S L L +       +    +    +++ + LR  
Sbjct: 176 LEELEIDASDLQ-SYEPKSLKSIQNVSHLILHMK--QHILLLEIFVDVTSSVECLELRDT 232

Query: 63  HLSQ-EISEILNI-FSGCV-SIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVG 119
            L     SE+     +  +      ++ +   S+   +   L Q   L  L+ + N +  
Sbjct: 233 DLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKS 291

Query: 120 PIPQS-LGHLSNLRVLQIYNNKLN 142
            +P      L++L+ + ++ N  +
Sbjct: 292 -VPDGIFDRLTSLQKIWLHTNPWD 314

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 71.6 bits (176), Expect = 8e-14
 Identities = 44/168 (26%), Positives = 75/168 (44%), Gaps = 13/168 (7%)

Query: 3   HLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGV 62
           +L  L L +N L   ID+ A   L  + +LDLS N       P +   L  L +++L   
Sbjct: 57  NLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRC 115

Query: 63  HLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNL---DLANNSIVG 119
            L QE+     +F G  +  L+ L L+ +++   L D    F++L NL    L  N I  
Sbjct: 116 GL-QELGP--GLFRGLAA--LQYLYLQDNALQ-ALPD--DTFRDLGNLTHLFLHGNRISS 167

Query: 120 PIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLT 167
              ++   L +L  L ++ N++   +    F +L +L    +  N L+
Sbjct: 168 VPERAFRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYLFANNLS 214

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 65.0 bits (159), Expect = 1e-11
 Identities = 42/244 (17%), Positives = 81/244 (33%), Gaps = 46/244 (18%)

Query: 4   LEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRI----PRSMASLCNLKSINL 59
            + + L  N++   + + +     +++ L L  N      +      +   L  L+ ++L
Sbjct: 34  SQRIFLHGNRIS-HVPAASFRACRNLTILWLHSN-----VLARIDAAAFTGLALLEQLDL 87

Query: 60  RGVHLSQEISEILNIFSGCVSIELESLDLRS---SSISGHLTDQLGQFKNLDNLDLANNS 116
                 + +      F G     L +L L       +   L   L     L  L L +N+
Sbjct: 88  SDNAQLRSVDP--ATFHGLGR--LHTLHLDRCGLQELGPGLFRGL---AALQYLYLQDNA 140

Query: 117 IVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIP 176
           +      +   L NL  L ++ N+++ ++ E  F  L  L    +  N++        + 
Sbjct: 141 LQALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVA------HVH 193

Query: 177 PFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGL 236
           P     L                    L  L L  + +S L P   L     L++L L  
Sbjct: 194 PHAFRDL------------------GRLMTLYLFANNLSAL-PTEALAPLRALQYLRLND 234

Query: 237 NQFH 240
           N + 
Sbjct: 235 NPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 63.5 bits (155), Expect = 4e-11
 Identities = 47/279 (16%), Positives = 79/279 (28%), Gaps = 73/279 (26%)

Query: 79  VSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYN 138
           +    + + L  + IS          +NL  L L +N +      +   L+ L  L + +
Sbjct: 30  IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89

Query: 139 NKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWL 198
           N    ++    F  L +L    +    L        +                   P   
Sbjct: 90  NAQLRSVDPATFHGLGRLHTLHLDRCGLQE------LG------------------PGLF 125

Query: 199 HSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQITDLTKVTQLLFLSVH 258
                LQYL L ++ +  L P    +    L  L L  N+       ++ V +  F  + 
Sbjct: 126 RGLAALQYLYLQDNALQAL-PDDTFRDLGNLTHLFLHGNR-------ISSVPERAFRGL- 176

Query: 259 SNNMSGPLPLISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDC 318
                        +L  L L  N  +  V          P +   L              
Sbjct: 177 ------------HSLDRLLLHQNRVA-HV---------HPHAFRDL-------------- 200

Query: 319 WMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKN 357
                 L  L L  N  +     +L  L +L +L L  N
Sbjct: 201 ----GRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 61.2 bits (149), Expect = 2e-10
 Identities = 37/164 (22%), Positives = 55/164 (33%), Gaps = 8/164 (4%)

Query: 271 SNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIP-DCWMSYQNLEILE 329
            NL  L L +N  +  +       +     L  L L DN+    +    +     L  L 
Sbjct: 56  RNLTILWLHSNVLA-RIDAAAFTGL---ALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111

Query: 330 LSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPV-SLKNCTALESLDVGENEFVGNIP 388
           L         P     L +L +L L  N L   +P  + ++   L  L +  N    ++P
Sbjct: 112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRIS-SVP 169

Query: 389 TWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNL 432
                    +  L+L  N      P    DL  L  L L  NNL
Sbjct: 170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL 213

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 60.0 bits (146), Expect = 5e-10
 Identities = 48/250 (19%), Positives = 81/250 (32%), Gaps = 48/250 (19%)

Query: 324 NLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEF 383
             + + L  N+ +     S  +  +L  L L  N L+     +      LE LD+ +N  
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 384 VGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNI 443
           + ++   T     R+  L L         P     LA LQ L L DN L           
Sbjct: 93  LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL----------- 141

Query: 444 TGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLT 503
              +  ++F                 LT                 L L        N ++
Sbjct: 142 -QALPDDTFRDLGN------------LTH----------------LFL------HGNRIS 166

Query: 504 KSIPLEM-TNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLM 562
            S+P      L +   L    N      P +   +  L ++    N LS    ++++ L 
Sbjct: 167 -SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLR 225

Query: 563 SLNHLNLSNN 572
           +L +L L++N
Sbjct: 226 ALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 59.6 bits (145), Expect = 7e-10
 Identities = 46/216 (21%), Positives = 77/216 (35%), Gaps = 21/216 (9%)

Query: 204 LQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQITDLTK-----VTQLLFLSVH 258
            Q + L  + +S + P    ++   L  L L  N     +  +       +  L  L + 
Sbjct: 34  SQRIFLHGNRISHV-PAASFRACRNLTILWLHSNV----LARIDAAAFTGLALLEQLDLS 88

Query: 259 SNNMSGPLPLIS----SNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGE 314
            N     +   +      L  L L        +   L        +L  L L+DN+LQ  
Sbjct: 89  DNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGL---FRGLAALQYLYLQDNALQ-A 143

Query: 315 IPDCWMSY-QNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTAL 373
           +PD       NL  L L  N+ +     +   L SL  LLL +NR++   P + ++   L
Sbjct: 144 LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRL 203

Query: 374 ESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFH 409
            +L +  N     +PT        +  L L  N + 
Sbjct: 204 MTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 52.3 bits (126), Expect = 2e-07
 Identities = 27/137 (19%), Positives = 45/137 (32%), Gaps = 4/137 (2%)

Query: 298 PKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKN 357
           P +   + L  N +       + + +NL IL L +N        +   L  L  L L  N
Sbjct: 31  PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90

Query: 358 RLSGTIPVS-LKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTR- 415
               ++  +       L +L +        +        + +  L L+ N     LP   
Sbjct: 91  AQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQA-LPDDT 148

Query: 416 LCDLAFLQILDLADNNL 432
             DL  L  L L  N +
Sbjct: 149 FRDLGNLTHLFLHGNRI 165

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 73.6 bits (180), Expect = 9e-14
 Identities = 71/314 (22%), Positives = 121/314 (38%), Gaps = 72/314 (22%)

Query: 70  EILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLS 129
            I  IF      E    +L+  S++        +  ++D +   N+ I     Q + +L 
Sbjct: 10  PIKQIFPDDAFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIK--SVQGIQYLP 65

Query: 130 NLRVLQIYNNKLNGTLSEI-HFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQLVALGFHNC 188
           N+  L +  NKL    ++I   +NL  L W  +  NK+        +             
Sbjct: 66  NVTKLFLNGNKL----TDIKPLTNLKNLGWLFLDENKIKD------LSS----------- 104

Query: 189 YVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQITDLTK 248
                    L   K L+ L+L ++G+SD+  +  L    QL+ L LG N+    IT L++
Sbjct: 105 ---------LKDLKKLKSLSLEHNGISDINGLVHLP---QLESLYLGNNKIT-DITVLSR 151

Query: 249 VTQLLFLSVHSNNMSGPLPLIS-SNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLK 307
           +T+L  LS+  N +S  +PL   + L  L LS N             I++ ++L GLK  
Sbjct: 152 LTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKN------------HISDLRALAGLK-- 197

Query: 308 DNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSL 367
                           NL++LEL + +   K  N   +L     +      L    P  +
Sbjct: 198 ----------------NLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL--VTPEII 239

Query: 368 KNCTALESLDVGEN 381
            +    E  +V  +
Sbjct: 240 SDDGDYEKPNVKWH 253

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 73.6 bits (180), Expect = 9e-14
 Identities = 65/378 (17%), Positives = 117/378 (30%), Gaps = 97/378 (25%)

Query: 83  LESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLN 142
           +      S+ I   +      F      +L   S+   + Q+   L+++  +   N+ + 
Sbjct: 1   MGETITVSTPIK-QIFP-DDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIK 56

Query: 143 GTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQK 202
            ++  I    L  ++   + GNKLT       I P                    L + K
Sbjct: 57  -SVQGI--QYLPNVTKLFLNGNKLTD------IKP--------------------LTNLK 87

Query: 203 HLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNNM 262
           +L +L L  + + DL  ++ LK    LK L L  N     I+D+  +  L          
Sbjct: 88  NLGWLFLDENKIKDLSSLKDLKK---LKSLSLEHNG----ISDINGLVHL---------- 130

Query: 263 SGPLPLISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSY 322
                     L  L L NN            +I +   L  L                  
Sbjct: 131 --------PQLESLYLGNN------------KITDITVLSRLT----------------- 153

Query: 323 QNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENE 382
             L+ L L +N+ +  +   L  LT L  L L KN +S      L     L+ L++    
Sbjct: 154 -KLDTLSLEDNQIS-DIVP-LAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQ- 207

Query: 383 FVGNIPTWTGERFSRMVVL-ILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCIN 441
                        S +VV   +++ +     P  + D    +  ++  +    T      
Sbjct: 208 ---ECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFI 264

Query: 442 NITGMVAANSFTRSSQQY 459
               +    +  R   + 
Sbjct: 265 FYQPVTIGKAKARFHGRV 282

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 70.9 bits (173), Expect = 6e-13
 Identities = 61/345 (17%), Positives = 122/345 (35%), Gaps = 56/345 (16%)

Query: 1   FIHLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLR 60
           F      +L+   +    D+     L SI ++  + +      I +S+  +  L   N+ 
Sbjct: 20  FAETIKDNLKKKSVT---DAVTQNELNSIDQIIANNS-----DI-KSVQGIQYLP--NVT 68

Query: 61  GVHLSQ-EISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVG 119
            + L+  ++++I  + +   +  L  L L  + I       L   K L +L L +N I  
Sbjct: 69  KLFLNGNKLTDIKPL-TNLKN--LGWLFLDENKIKD--LSSLKDLKKLKSLSLEHNGIS- 122

Query: 120 PIPQSLGHLSNLRVLQIYNNKLNGTLSEIH-FSNLTKLSWFRVGGNKLTLEVRHDWIPPF 178
                L HL  L  L + NNK    +++I   S LTKL    +  N+++       I P 
Sbjct: 123 -DINGLVHLPQLESLYLGNNK----ITDITVLSRLTKLDTLSLEDNQISD------IVP- 170

Query: 179 QLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQ 238
                              L     LQ L L  + +SDL  +  LK+   L  L+L   +
Sbjct: 171 -------------------LAGLTKLQNLYLSKNHISDLRALAGLKN---LDVLELFSQE 208

Query: 239 FHG-QITDLTKVTQLLFLSVHSNNMSGPLPLISSNLVYLDLSNNSFSGSVSHYLCYRINE 297
                I   + +     +     ++  P   IS +  Y   +        ++ + +   +
Sbjct: 209 CLNKPINHQSNLVVPNTVKNTDGSLVTPEI-ISDDGDYEKPNVKWHLPEFTNEVSFIFYQ 267

Query: 298 PKSLIGLKLK-DNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPN 341
           P ++   K +    +   + + +    +++   +      G    
Sbjct: 268 PVTIGKAKARFHGRVTQPLKEVYTVSYDVDGTVIKTKVEAGTRIT 312

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 55.1 bits (132), Expect = 5e-08
 Identities = 62/358 (17%), Positives = 107/358 (29%), Gaps = 72/358 (20%)

Query: 271 SNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILEL 330
           +  +  +L   S + +V+       NE  S+  +   ++ ++  +        N+  L L
Sbjct: 21  AETIKDNLKKKSVTDAVT------QNELNSIDQIIANNSDIK-SVQGIQ-YLPNVTKLFL 72

Query: 331 SNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTW 390
           + NK T  +   L +L +L WL L +N++       LK+   L+SL +  N     I   
Sbjct: 73  NGNKLT-DIKP-LTNLKNLGWLFLDENKIKDLSS--LKDLKKLKSLSLEHN----GISDI 124

Query: 391 TG-ERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAA 449
            G     ++  L L +N         L  L  L  L L DN         I++I      
Sbjct: 125 NGLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQ--------ISDIV----- 169

Query: 450 NSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLE 509
                        PL G   L                  L L      S+N+++    L 
Sbjct: 170 -------------PLAGLTKLQN----------------LYL------SKNHISDLRALA 194

Query: 510 MTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNL 569
              LK    L         +       +    ++  +   L    P+ +S+       N+
Sbjct: 195 --GLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL--VTPEIISDDGDYEKPNV 250

Query: 570 SNNKLT-GKIPSSTQLQSFDASSFTGNDLCGAPLPKNCAENVSVSEDENGDEDEDEVD 626
             +        S    Q                 P      VS   D    + + E  
Sbjct: 251 KWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLKEVYTVSYDVDGTVIKTKVEAG 308

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 46.6 bits (110), Expect = 2e-05
 Identities = 37/234 (15%), Positives = 76/234 (32%), Gaps = 63/234 (26%)

Query: 343 LGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTG-ERFSRMVVL 401
             +    I   L K  ++  +        +++ +    +    +I +  G +    +  L
Sbjct: 17  DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNS----DIKSVQGIQYLPNVTKL 70

Query: 402 ILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLP 461
            L  N      P  L +L  L  L L +N +     K ++++  +               
Sbjct: 71  FLNGNKLTDIKP--LTNLKNLGWLFLDENKI-----KDLSSLKDLKK------------- 110

Query: 462 LPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNF 521
                   L                  L+L        N ++    L   +L   +SL  
Sbjct: 111 --------LKS----------------LSL------EHNGISDINGLV--HLPQLESLYL 138

Query: 522 SHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLSNNKLT 575
            +N  T      +  +  L+++    NQ+S +I   ++ L  L +L LS N ++
Sbjct: 139 GNNKIT--DITVLSRLTKLDTLSLEDNQIS-DIV-PLAGLTKLQNLYLSKNHIS 188

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 44.3 bits (104), Expect = 1e-04
 Identities = 37/204 (18%), Positives = 80/204 (39%), Gaps = 44/204 (21%)

Query: 393 ERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSF 452
           + F+  +   L+  +    +     +L  +  +   +++        I ++ G+      
Sbjct: 18  DAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSD--------IKSVQGI------ 61

Query: 453 TRSSQQYLP----LPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPL 508
                QYLP    L L+G+ +             I+    L  +    +  N +     L
Sbjct: 62  -----QYLPNVTKLFLNGNKL-----------TDIKPLTNLKNLGWLFLDENKIKDLSSL 105

Query: 509 EMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLN 568
           +  +LK  +SL+  HN  +  I   +  +  LES+    N+++      +S L  L+ L+
Sbjct: 106 K--DLKKLKSLSLEHNGIS-DI-NGLVHLPQLESLYLGNNKIT--DITVLSRLTKLDTLS 159

Query: 569 LSNNKLT--GKIPSSTQLQSFDAS 590
           L +N+++    +   T+LQ+   S
Sbjct: 160 LEDNQISDIVPLAGLTKLQNLYLS 183

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 68.6 bits (168), Expect = 1e-12
 Identities = 53/314 (16%), Positives = 104/314 (33%), Gaps = 74/314 (23%)

Query: 101 LGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFR 160
                N   +    +++   + Q+   L  +  L  +   +  T+  +    L  L    
Sbjct: 15  DPALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVT-TIEGV--QYLNNLIGLE 69

Query: 161 VGGNKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPI 220
           +  N++T       + P +                    +   +  L L  + + ++  I
Sbjct: 70  LKDNQIT------DLAPLK--------------------NLTKITELELSGNPLKNVSAI 103

Query: 221 RFLKSAFQLKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNNMSGPLPLIS-SNLVYLDLS 279
             L+    +K LDL   Q    +T L  ++ L  L +  N ++   PL   +NL YL + 
Sbjct: 104 AGLQ---SIKTLDLTSTQIT-DVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIG 159

Query: 280 NNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKL 339
           N             ++++   L  L                    L  L+  +NK +  +
Sbjct: 160 NA------------QVSDLTPLANLS------------------KLTTLKADDNKIS-DI 188

Query: 340 PNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMV 399
              L SL +LI + L  N++S   P  L N + L  + +        I        + +V
Sbjct: 189 SP-LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQ----TITNQPVFYNNNLV 241

Query: 400 VLILRSNNFHGPLP 413
           V  +       P+ 
Sbjct: 242 VPNVVKGPSGAPIA 255

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 63.6 bits (155), Expect = 5e-11
 Identities = 42/274 (15%), Positives = 100/274 (36%), Gaps = 33/274 (12%)

Query: 19  DSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGC 78
                  L +  ++    +   +     + A L  + +++  G  ++      +      
Sbjct: 11  VIFPDPALANAIKIAAGKSNVTD---TVTQADLDGITTLSAFGTGVTT-----IEGVQYL 62

Query: 79  VSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYN 138
            +  L  L+L+ + I+  L   L     +  L+L+ N +       +  L +++ L + +
Sbjct: 63  NN--LIGLELKDNQIT-DLAP-LKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTS 116

Query: 139 NKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPF----QLVALGFHNCYVGSRF 194
            ++         + L+ L    +  N++T       I P      L  L   N  V    
Sbjct: 117 TQIT---DVTPLAGLSNLQVLYLDLNQITN------ISPLAGLTNLQYLSIGNAQVSDLT 167

Query: 195 PQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQITDLTKVTQLLF 254
           P  L +   L  L   ++ +SD+ P+  L +   L  + L  NQ    ++ L   + L  
Sbjct: 168 P--LANLSKLTTLKADDNKISDISPLASLPN---LIEVHLKNNQIS-DVSPLANTSNLFI 221

Query: 255 LSVHSNNMSGPLPLISSNLVYLDLSNNSFSGSVS 288
           +++ +  ++      ++NLV  ++        ++
Sbjct: 222 VTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIA 255

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 51.6 bits (124), Expect = 3e-07
 Identities = 47/305 (15%), Positives = 94/305 (30%), Gaps = 71/305 (23%)

Query: 272 NLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELS 331
           N + +    ++ + +V+        +   +  L      +   I        NL  LEL 
Sbjct: 20  NAIKIAAGKSNVTDTVT------QADLDGITTLSAFGTGVT-TIEGV-QYLNNLIGLELK 71

Query: 332 NNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWT 391
           +N+ T  L   L +LT +  L L  N L       +    ++++LD+        I   T
Sbjct: 72  DNQIT-DLAP-LKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTST----QITDVT 123

Query: 392 G-ERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAAN 450
                S + VL L  N      P  L  L  LQ L + +          ++++T      
Sbjct: 124 PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQ--------VSDLT------ 167

Query: 451 SFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEM 510
                       PL                        L+ +       N ++   PL  
Sbjct: 168 ------------PLAN----------------------LSKLTTLKADDNKISDISPLA- 192

Query: 511 TNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLS 570
            +L     ++  +N  +      +    +L  +  +   ++ +     +NL+  N +   
Sbjct: 193 -SLPNLIEVHLKNNQISD--VSPLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGP 249

Query: 571 NNKLT 575
           +    
Sbjct: 250 SGAPI 254

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 42.0 bits (99), Expect = 4e-04
 Identities = 43/252 (17%), Positives = 84/252 (33%), Gaps = 65/252 (25%)

Query: 343 LGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTG-ERFSRMVVL 401
             +L + I +  GK+ ++ T+     +   + +L          + T  G +  + ++ L
Sbjct: 15  DPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGT----GVTTIEGVQYLNNLIGL 68

Query: 402 ILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLP 461
            L+ N      P  L +L  +  L+L+ N L     K ++ I G+               
Sbjct: 69  ELKDNQITDLAP--LKNLTKITELELSGNPL-----KNVSAIAGLQ-------------- 107

Query: 462 LPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNF 521
                                       ++ K  D++   +T   PL    L   Q L  
Sbjct: 108 ----------------------------SI-KTLDLTSTQITDVTPLA--GLSNLQVLYL 136

Query: 522 SHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLSNNKLTG--KIP 579
             N  T      +  + +L+ +     Q+S   P  ++NL  L  L   +NK++    + 
Sbjct: 137 DLNQITN--ISPLAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISPLA 192

Query: 580 SSTQLQSFDASS 591
           S   L      +
Sbjct: 193 SLPNLIEVHLKN 204

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 65.4 bits (160), Expect = 7e-12
 Identities = 47/221 (21%), Positives = 87/221 (39%), Gaps = 30/221 (13%)

Query: 4   LEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLN---TGPEGRIPRSMASLCNLKSINLR 60
            + L L  N L+  + S +  +   +  LDLS     T  +G    +  SL +L ++ L 
Sbjct: 30  TKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDG----AYQSLSHLSTLILT 84

Query: 61  GVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSI-VG 119
           G  + Q ++     FSG  S  L+ L    ++++      +G  K L  L++A+N I   
Sbjct: 85  GNPI-QSLAL--GAFSGLSS--LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF 139

Query: 120 PIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRV----GGNKLTLEVRHDWI 175
            +P+   +L+NL  L + +NK+  ++       L ++    +      N +       +I
Sbjct: 140 KLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMN------FI 192

Query: 176 PP-----FQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLN 211
            P      +L  L      + S           LQ + L  
Sbjct: 193 QPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT 233

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 58.1 bits (141), Expect = 2e-09
 Identities = 52/256 (20%), Positives = 82/256 (32%), Gaps = 54/256 (21%)

Query: 106 NLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNK 165
           +  NLDL+ N +      S      L+VL +   ++  T+ +  + +L+ LS   + GN 
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNP 87

Query: 166 LTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDL--FPIRFL 223
           +        +         F                  LQ L  + + ++ L  FPI  L
Sbjct: 88  IQS------LALGA-----FSGL-------------SSLQKLVAVETNLASLENFPIGHL 123

Query: 224 KSAFQLKFLDLGLNQFHGQITD--LTKVTQLLFLSVHSNNMSGPLPLISSNLVYLDLSNN 281
           K    LK L++  N           + +T L  L + SN +          L  + L N 
Sbjct: 124 K---TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL 180

Query: 282 SFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPN 341
           S                     L L  N +   I         L+ L L  N+       
Sbjct: 181 S---------------------LDLSLNPMN-FIQPGAFKEIRLKELALDTNQLKSVPDG 218

Query: 342 SLGSLTSLIWLLLGKN 357
               LTSL  + L  N
Sbjct: 219 IFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 53.4 bits (129), Expect = 6e-08
 Identities = 46/257 (17%), Positives = 73/257 (28%), Gaps = 59/257 (22%)

Query: 324 NLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSL-KNCTALESLDVGENE 382
           + + L+LS N        S  S   L  L L +  +  TI     ++ + L +L +  N 
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNP 87

Query: 383 FVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINN 442
            + ++        S +  L+    N        +  L  L+ L++A N +          
Sbjct: 88  -IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI---------- 136

Query: 443 ITGMVAANSFTRSSQQYLPLP--LDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRN 500
                          Q   LP        L                  L+L      S N
Sbjct: 137 ---------------QSFKLPEYFSNLTNLEH----------------LDL------SSN 159

Query: 501 NLTKSIPLEM----TNLKATQ-SLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIP 555
            +  SI          +     SL+ S N     I         L+ +    NQL     
Sbjct: 160 KIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLKSVPD 217

Query: 556 QSMSNLMSLNHLNLSNN 572
                L SL  + L  N
Sbjct: 218 GIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 50.7 bits (122), Expect = 5e-07
 Identities = 41/167 (24%), Positives = 63/167 (37%), Gaps = 14/167 (8%)

Query: 3   HLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMAS-LCNLKSINLRG 61
           HL  L L  N +Q ++   A   L+S+ +L           +       L  LK +N+  
Sbjct: 77  HLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVET--NLASLENFPIGHLKTLKELNVAH 133

Query: 62  VHLSQEISEILNIFSGCVSIELESLDLRS---SSISGHLTDQLGQFKNLD-NLDLANNSI 117
             +          FS   +  LE LDL S    SI       L Q   L+ +LDL+ N +
Sbjct: 134 NLIQSFKLP--EYFSNLTN--LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM 189

Query: 118 VGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGN 164
              I         L+ L +  N+L  ++ +  F  LT L    +  N
Sbjct: 190 NF-IQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 44.2 bits (105), Expect = 7e-05
 Identities = 46/233 (19%), Positives = 81/233 (34%), Gaps = 31/233 (13%)

Query: 298 PKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKN 357
           P S   L L  N L+      + S+  L++L+LS  +       +  SL+ L  L+L  N
Sbjct: 27  PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86

Query: 358 RLSGTIPVSL-KNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHG-PLPTR 415
            +  ++ +      ++L+ L   E     ++  +       +  L +  N      LP  
Sbjct: 87  PIQ-SLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEY 144

Query: 416 LCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQ---QYLPLPLDGDVILTE 472
             +L  L+ LDL+ N +  +I                    Q     L L L  + +   
Sbjct: 145 FSNLTNLEHLDLSSNKI-QSIY-----------CTDLRVLHQMPLLNLSLDLSLNPMNFI 192

Query: 473 KASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLE-MTNLKATQSLNFSHN 524
           +     E         + L KE  +  N L  S+P      L + Q +    N
Sbjct: 193 QPGAFKE---------IRL-KELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 43.4 bits (103), Expect = 1e-04
 Identities = 37/174 (21%), Positives = 58/174 (33%), Gaps = 20/174 (11%)

Query: 269 ISSNLVYLDLSNN---SFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNL 325
           +  +   LDLS N                      L  L L    +Q      + S  +L
Sbjct: 26  LPFSTKNLDLSFNPLRHLGSYSFFSF-------PELQVLDLSRCEIQTIEDGAYQSLSHL 78

Query: 326 EILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVG 385
             L L+ N        +   L+SL  L+  +  L+      + +   L+ L+V  N    
Sbjct: 79  STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ- 137

Query: 386 NIPTWTGERFSRMV---VLILRSNNFHGPLPTRLCDLAFLQI----LDLADNNL 432
           +      E FS +     L L SN       T L  L  + +    LDL+ N +
Sbjct: 138 SFK--LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM 189

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 61.4 bits (149), Expect = 3e-10
 Identities = 51/275 (18%), Positives = 88/275 (32%), Gaps = 52/275 (18%)

Query: 104 FKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRV-G 162
            +N   L      +      +     +L  ++I  N +   +    FSNL KL   R+  
Sbjct: 29  PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88

Query: 163 GNKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRF 222
            N L       +I P     L                   +LQYL + N+G+  L  +  
Sbjct: 89  ANNLL------YINPEAFQNL------------------PNLQYLLISNTGIKHLPDVHK 124

Query: 223 LKSAFQLKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNNMSGPLPLISSNLVYLDLSNNS 282
           + S  Q   LD+  N     I            ++  N+  G    +S   V L L+ N 
Sbjct: 125 IHSL-QKVLLDIQDN---INIH-----------TIERNSFVG----LSFESVILWLNKNG 165

Query: 283 FSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNS 342
               + +      N  +        +N+L+    D +       IL++S  +        
Sbjct: 166 IQ-EIHNSAF---NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG 221

Query: 343 LGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLD 377
           L +L  L        +    +P +L+   AL    
Sbjct: 222 LENLKKLRARSTYNLK---KLP-TLEKLVALMEAS 252

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 59.5 bits (144), Expect = 1e-09
 Identities = 43/326 (13%), Positives = 94/326 (28%), Gaps = 44/326 (13%)

Query: 324 NLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVS-LKNCTALESLDVGENE 382
           N   L     K       +      L  + + +N +   I      N   L  + + +  
Sbjct: 31  NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90

Query: 383 FVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINN 442
            +  I     +    +  L++ +                  +LD+ DN    TI      
Sbjct: 91  NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIE----- 145

Query: 443 ITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVK--ETDVSRN 500
                  NSF   S + + L L+ + I       +            N  +  E ++S N
Sbjct: 146 ------RNSFVGLSFESVILWLNKNGI-----QEIHNS-------AFNGTQLDELNLSDN 187

Query: 501 NLTKSIPLEM-TNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDF-SVNQLSGEIPQSM 558
           N  + +P ++         L+ S       +P     + +L+ +   S   L  ++P ++
Sbjct: 188 NNLEELPNDVFHGASGPVILDISRTRIH-SLPS--YGLENLKKLRARSTYNLK-KLP-TL 242

Query: 559 SNLMSLNHLNLSNN-----------KLTGKIPSSTQLQSFDASSFTGNDLCGAPLPKNCA 607
             L++L   +L+             +++   P   +        +               
Sbjct: 243 EKLVALMEASLTYPSHCCAFANWRRQISELHPICNKSILRQEVDYMTQARGQRSSLAEDN 302

Query: 608 ENVSVSEDENGDEDEDEVDHWLYVSI 633
           E+      +    + D       V +
Sbjct: 303 ESSYSRGFDMTYTEFDYDLCNEVVDV 328

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 54.8 bits (132), Expect = 4e-08
 Identities = 39/242 (16%), Positives = 74/242 (30%), Gaps = 25/242 (10%)

Query: 1   FIHLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLR 60
             +   L     KL+  I   A      + ++++S N   E       ++L  L  I + 
Sbjct: 29  PRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87

Query: 61  GVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGP 120
             +    I+     F    +  L+ L + ++ I                LD+ +N  +  
Sbjct: 88  KANNLLYINP--EAFQNLPN--LQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHT 143

Query: 121 IPQSL--GHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPP- 177
           I ++   G      +L +  N +   +    F+            N L        +P  
Sbjct: 144 IERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLE------ELPND 196

Query: 178 -FQ----LVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFL 232
            F      V L      + S     L + K L+  +  N  +  L  +  L +   L   
Sbjct: 197 VFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN--LKKLPTLEKLVA---LMEA 251

Query: 233 DL 234
            L
Sbjct: 252 SL 253

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 51.4 bits (123), Expect = 4e-07
 Identities = 42/237 (17%), Positives = 82/237 (34%), Gaps = 17/237 (7%)

Query: 53  NLKSINLRGVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLD- 111
           N   +      L   I +    FSG     LE +++  + +   +  +   F NL  L  
Sbjct: 31  NAIELRFVLTKLR-VIQK--GAFSGFGD--LEKIEISQNDVLEVI--EADVFSNLPKLHE 83

Query: 112 ---LANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTL 168
                 N+++   P++  +L NL+ L I N  +   L ++H  +  +     +  N    
Sbjct: 84  IRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIH 142

Query: 169 EVRHDWIP--PFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSA 226
            +  +      F+ V L  +   +         +   L  LNL ++   +  P      A
Sbjct: 143 TIERNSFVGLSFESVILWLNKNGI-QEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGA 201

Query: 227 FQLKFLDLGLNQFHG-QITDLTKVTQLLFLSVHSNNMSGPLPLISSNLVYLDLSNNS 282
                LD+   + H      L  + +L   S ++      L  +   L+   L+  S
Sbjct: 202 SGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKLPTLEKLV-ALMEASLTYPS 257

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 60.8 bits (148), Expect = 3e-10
 Identities = 71/315 (22%), Positives = 124/315 (39%), Gaps = 72/315 (22%)

Query: 69  SEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHL 128
           + I  IFS     E    +L+  S++        +  ++D +   N+ I     Q + +L
Sbjct: 12  TPIKQIFSDDAFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIK--SVQGIQYL 67

Query: 129 SNLRVLQIYNNKLNGTLSEI-HFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQLVALGFHN 187
            N+  L +  NKL    ++I   +NL  L W  +  NK+        +   +       +
Sbjct: 68  PNVTKLFLNGNKL----TDIKPLANLKNLGWLFLDENKVKD------LSSLK-------D 110

Query: 188 CYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQITDLT 247
                         K L+ L+L ++G+SD+  +  L    QL+ L LG N+    IT L+
Sbjct: 111 L-------------KKLKSLSLEHNGISDINGLVHLP---QLESLYLGNNKIT-DITVLS 153

Query: 248 KVTQLLFLSVHSNNMSGPLPLIS-SNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKL 306
           ++T+L  LS+  N +S  +PL   + L  L LS N             I++ ++L GLK 
Sbjct: 154 RLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKN------------HISDLRALAGLK- 200

Query: 307 KDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVS 366
                            NL++LEL + +   K  N   +L     +      L    P  
Sbjct: 201 -----------------NLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL--VTPEI 241

Query: 367 LKNCTALESLDVGEN 381
           + +    E  +V  +
Sbjct: 242 ISDDGDYEKPNVKWH 256

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 56.6 bits (137), Expect = 8e-09
 Identities = 61/296 (20%), Positives = 101/296 (34%), Gaps = 61/296 (20%)

Query: 1   FIHLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPR--SMASLCNLKSIN 58
           F      +L+   +    D+     L SI ++  + +      I     +  L N+  + 
Sbjct: 23  FAETIKDNLKKKSVT---DAVTQNELNSIDQIIANNS-----DIKSVQGIQYLPNVTKLF 74

Query: 59  LRGVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIV 118
           L G  L+ +I  + N+        L  L L  + +       L   K L +L L +N I 
Sbjct: 75  LNGNKLT-DIKPLANL------KNLGWLFLDENKVKD--LSSLKDLKKLKSLSLEHNGIS 125

Query: 119 GPIPQSLGHLSNLRVLQIYNNKLNGTLSEIH-FSNLTKLSWFRVGGNKLTLEVRHDWIPP 177
                 L HL  L  L + NNK    +++I   S LTKL    +  N+++       I P
Sbjct: 126 --DINGLVHLPQLESLYLGNNK----ITDITVLSRLTKLDTLSLEDNQISD------IVP 173

Query: 178 FQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLN 237
                                     LQ L L  + +SDL  +  LK+   L  L+L   
Sbjct: 174 LA--------------------GLTKLQNLYLSKNHISDLRALAGLKN---LDVLELFSQ 210

Query: 238 QFHG-QITDLTKVTQLLFLSVHSNNMSGPLPLISSNLVYLDL----SNNSFSGSVS 288
           +     I   + +     +     ++  P   IS +  Y           F+  VS
Sbjct: 211 ECLNKPINHQSNLVVPNTVKNTDGSLVTPEI-ISDDGDYEKPNVKWHLPEFTNEVS 265

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 53.1 bits (128), Expect = 1e-07
 Identities = 50/276 (18%), Positives = 87/276 (31%), Gaps = 52/276 (18%)

Query: 7   LSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQ 66
                  ++      +        + +L            +   L ++  I       + 
Sbjct: 7   TITVPTPIK---QIFSDDAFAETIKDNLKKK---SVTDAVTQNELNSIDQIIAN----NS 56

Query: 67  EISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLG 126
           +I  +  I     +  +  L L  + ++      L   KNL  L L  N +      SL 
Sbjct: 57  DIKSVQGI-QYLPN--VTKLFLNGNKLTD--IKPLANLKNLGWLFLDENKVK--DLSSLK 109

Query: 127 HLSNLRVLQIYNNKLNGTLSEI-HFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQLVALGF 185
            L  L+ L + +N     +S+I    +L +L    +G NK+T       I          
Sbjct: 110 DLKKLKSLSLEHNG----ISDINGLVHLPQLESLYLGNNKITD------ITV-------- 151

Query: 186 HNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQITD 245
                       L     L  L+L ++ +SD+ P+  L     L+ L L  N     +  
Sbjct: 152 ------------LSRLTKLDTLSLEDNQISDIVPLAGLTK---LQNLYLSKNHIS-DLRA 195

Query: 246 LTKVTQLLFLSVHSNNMSGPLPLISSNLVYLDLSNN 281
           L  +  L  L + S           SNLV  +   N
Sbjct: 196 LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKN 231

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 48.1 bits (115), Expect = 3e-06
 Identities = 47/193 (24%), Positives = 76/193 (39%), Gaps = 20/193 (10%)

Query: 242 QITDLTKVTQLLFLSVHSNNMSGPLPLIS-SNLVYLDLSNNSFSGSVSHYLCYRINEPKS 300
           QI       + +  ++   +++  +     +++  +  +N+    SV       I    +
Sbjct: 16  QIFSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIK-SVQG-----IQYLPN 69

Query: 301 LIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLS 360
           +  L L  N L    P    + +NL  L L  NK    L + L  L  L  L L  N +S
Sbjct: 70  VTKLFLNGNKLTDIKPLA--NLKNLGWLFLDENKVK-DLSS-LKDLKKLKSLSLEHNGIS 125

Query: 361 GTIPVSLKNCTALESLDVGENEFVGNIPTWTG-ERFSRMVVLILRSNNFHGPLPTRLCDL 419
             I   L +   LESL +G N     I   T   R +++  L L  N     +P  L  L
Sbjct: 126 -DIN-GLVHLPQLESLYLGNN----KITDITVLSRLTKLDTLSLEDNQISDIVP--LAGL 177

Query: 420 AFLQILDLADNNL 432
             LQ L L+ N++
Sbjct: 178 TKLQNLYLSKNHI 190

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 44.7 bits (106), Expect = 5e-05
 Identities = 42/277 (15%), Positives = 90/277 (32%), Gaps = 63/277 (22%)

Query: 299 KSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNR 358
              I   LK  S+   +        +++ +  +N+     +   +  L ++  L L  N+
Sbjct: 24  AETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIK-SVQG-IQYLPNVTKLFLNGNK 79

Query: 359 LSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCD 418
           L+   P  L N   L  L + EN     +   +                        L D
Sbjct: 80  LTDIKP--LANLKNLGWLFLDEN----KVKDLSS-----------------------LKD 110

Query: 419 LAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVS 478
           L  L+ L L  N +       IN +  +    S    + +                  ++
Sbjct: 111 LKKLKSLSLEHNGI-----SDINGLVHLPQLESLYLGNNK------------------IT 147

Query: 479 EGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMR 538
           +   +     L  +    +  N ++  +PL    L   Q+L  S N  +     ++  ++
Sbjct: 148 DITVLSR---LTKLDTLSLEDNQISDIVPLA--GLTKLQNLYLSKNHISD--LRALAGLK 200

Query: 539 SLESIDFSVNQLSGEIPQSMSNLMSLNHLNLSNNKLT 575
           +L+ ++    +   +     SNL+  N +  ++  L 
Sbjct: 201 NLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLV 237

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 42.0 bits (99), Expect = 4e-04
 Identities = 53/308 (17%), Positives = 99/308 (32%), Gaps = 71/308 (23%)

Query: 271 SNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILEL 330
           +  +  +L   S + +V+       NE  S+  +   ++ ++  +        N+  L L
Sbjct: 24  AETIKDNLKKKSVTDAVT------QNELNSIDQIIANNSDIK-SV-QGIQYLPNVTKLFL 75

Query: 331 SNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTW 390
           + NK T  +   L +L +L WL L +N++       LK+   L+SL +  N     I   
Sbjct: 76  NGNKLT-DIKP-LANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHN----GISDI 127

Query: 391 TG-ERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAA 449
            G     ++  L L +N         L  L  L  L L DN         I++I      
Sbjct: 128 NGLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQ--------ISDIV----- 172

Query: 450 NSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLE 509
                        PL G                      L  ++   +S+N+++    L 
Sbjct: 173 -------------PLAG----------------------LTKLQNLYLSKNHISDLRALA 197

Query: 510 MTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNL 569
              LK    L         +       +    ++  +   L    P+ +S+       N+
Sbjct: 198 --GLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT--PEIISDDGDYEKPNV 253

Query: 570 SNNKLTGK 577
             +     
Sbjct: 254 KWHLPEFT 261

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 56.9 bits (138), Expect = 2e-09
 Identities = 29/181 (16%), Positives = 56/181 (30%), Gaps = 32/181 (17%)

Query: 202 KHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNN 261
             L Y+ L N  ++DL  I +      +K L +         T+   ++ L         
Sbjct: 44  NSLTYITLANINVTDLTGIEYAH---NIKDLTINNI----HATNYNPISGL--------- 87

Query: 262 MSGPLPLISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMS 321
                    SNL  L +     +      L    +   SL  L +  ++    I     +
Sbjct: 88  ---------SNLERLRIMGKDVTSDKIPNL----SGLTSLTLLDISHSAHDDSILTKINT 134

Query: 322 YQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGEN 381
              +  ++LS N     +   L +L  L  L +  + +       +++   L  L     
Sbjct: 135 LPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQ 191

Query: 382 E 382
            
Sbjct: 192 T 192

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 56.5 bits (137), Expect = 3e-09
 Identities = 32/189 (16%), Positives = 65/189 (34%), Gaps = 39/189 (20%)

Query: 102 GQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRV 161
            Q  +L  + LAN ++       + +  N++ L I N       + I  S L+ L   R+
Sbjct: 41  AQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINNIHAT-NYNPI--SGLSNLERLRI 95

Query: 162 GGNKLTLEVRHDWIPPF----QLVALGFHNCYVGSRFPQWLHSQKHLQYLNL-LNSGMSD 216
            G  +T +     IP       L  L   +          +++   +  ++L  N  ++D
Sbjct: 96  MGKDVTSDK----IPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD 151

Query: 217 LFPIRFLKSAFQLKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNNMSGPLPLISSNLVYL 276
           + P++ L    +LK L++  +     + D   +                       L  L
Sbjct: 152 IMPLKTLP---ELKSLNIQFDG----VHDYRGIEDF------------------PKLNQL 186

Query: 277 DLSNNSFSG 285
              + +  G
Sbjct: 187 YAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 56.5 bits (137), Expect = 3e-09
 Identities = 29/194 (14%), Positives = 62/194 (31%), Gaps = 37/194 (19%)

Query: 242 QITDLTK--VTQLLFLSVHSNNMSGPLPLIS-SNLVYLDLSNNSFSGSVSHYLCYRINEP 298
              ++T+  +  L ++++ + N++    +    N+  L ++N                  
Sbjct: 34  STANITEAQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNI------------HATNY 81

Query: 299 KSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNR 358
             + GL                   NLE L +     T     +L  LTSL  L +  + 
Sbjct: 82  NPISGLS------------------NLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSA 123

Query: 359 LSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCD 418
              +I   +     + S+D+  N  + +I          +  L ++ +  H      + D
Sbjct: 124 HDDSILTKINTLPKVNSIDLSYNGAITDIMPLKT--LPELKSLNIQFDGVHDYRG--IED 179

Query: 419 LAFLQILDLADNNL 432
              L  L      +
Sbjct: 180 FPKLNQLYAFSQTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 56.1 bits (136), Expect = 3e-09
 Identities = 24/165 (14%), Positives = 59/165 (35%), Gaps = 18/165 (10%)

Query: 5   EYLSLRNNKLQGTIDSEALGNLTSISRLDLSLN--TGPEGRIPRSMASLCNLKSINLRGV 62
            YL+    +      +EA   + S++ + L+    T   G     +    N+K + +  +
Sbjct: 24  AYLNGLLGQSSTANITEA--QMNSLTYITLANINVTDLTG-----IEYAHNIKDLTINNI 76

Query: 63  HLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIP 122
           H +   + I  +        LE L +    ++      L    +L  LD+++++    I 
Sbjct: 77  HAT-NYNPISGL------SNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSIL 129

Query: 123 QSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLT 167
             +  L  +  + +  N     +  +    L +L    +  + + 
Sbjct: 130 TKINTLPKVNSIDLSYNGAITDIMPL--KTLPELKSLNIQFDGVH 172

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 54.2 bits (131), Expect = 2e-08
 Identities = 19/144 (13%), Positives = 56/144 (38%), Gaps = 14/144 (9%)

Query: 1   FIHLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLR 60
             +++ L++ N       +   +  L+++ RL +        +IP +++ L +L  +++ 
Sbjct: 65  AHNIKDLTINNIHAT---NYNPISGLSNLERLRIMGKDVTSDKIP-NLSGLTSLTLLDIS 120

Query: 61  GVHLS-QEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVG 119
                   +++I  +       ++ S+DL  +     +   L     L +L++  + +  
Sbjct: 121 HSAHDDSILTKINTL------PKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVHD 173

Query: 120 PIPQSLGHLSNLRVLQIYNNKLNG 143
                +     L  L  ++  + G
Sbjct: 174 YRG--IEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 50.0 bits (120), Expect = 4e-07
 Identities = 16/85 (18%), Positives = 31/85 (36%), Gaps = 2/85 (2%)

Query: 496 DVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIP 555
            ++  + T   P+    L   + L       T     ++  + SL  +D S +     I 
Sbjct: 72  TINNIHATNYNPIS--GLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSIL 129

Query: 556 QSMSNLMSLNHLNLSNNKLTGKIPS 580
             ++ L  +N ++LS N     I  
Sbjct: 130 TKINTLPKVNSIDLSYNGAITDIMP 154

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 48.4 bits (116), Expect = 2e-06
 Identities = 20/98 (20%), Positives = 37/98 (37%), Gaps = 3/98 (3%)

Query: 496 DVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIP 555
            +   ++T      ++ L +   L+ SH++    I   I  +  + SID S N    +I 
Sbjct: 94  RIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI- 152

Query: 556 QSMSNLMSLNHLNLSNNKLTGKIPSS--TQLQSFDASS 591
             +  L  L  LN+  + +          +L    A S
Sbjct: 153 MPLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYAFS 190

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 42.6 bits (101), Expect = 1e-04
 Identities = 19/113 (16%), Positives = 39/113 (34%), Gaps = 27/113 (23%)

Query: 324 NLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEF 383
           N++ L ++N   T    N +  L++L  L +    ++     +L   T+L  LD      
Sbjct: 67  NIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD------ 118

Query: 384 VGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTI 436
                              +  +     + T++  L  +  +DL+ N     I
Sbjct: 119 -------------------ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI 152

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 15/81 (18%), Positives = 33/81 (40%), Gaps = 3/81 (3%)

Query: 496 DVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIP 555
           D+S +    SI  ++  L    S++ S+N     I   +  +  L+S++   + +     
Sbjct: 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHDYRG 176

Query: 556 QSMSNLMSLNHLNLSNNKLTG 576
             + +   LN L   +  + G
Sbjct: 177 --IEDFPKLNQLYAFSQTIGG 195

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 58.2 bits (141), Expect = 4e-09
 Identities = 60/360 (16%), Positives = 109/360 (30%), Gaps = 84/360 (23%)

Query: 83  LESLDLRSSSISG----HLTDQLGQFKNLDNLDLANNSI----VGPIPQSLGHLSNLRVL 134
           +E   L+  +I+      +   L +  ++  + L+ N+I       + +++    +L + 
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 135 QIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQLVALGFHNCYVGSRF 194
           +  +        EI                            P  L  L           
Sbjct: 66  EFSDIFTGRVKDEI----------------------------PEALRLLL---------- 87

Query: 195 PQWLHSQKHLQYLNLLN-----SGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQITD--LT 247
            Q L     L  + L +     +    L    FL     L+ L L  N     +      
Sbjct: 88  -QALLKCPKLHTVRLSDNAFGPTAQEPLID--FLSKHTPLEHLYLHNNG----LGPQAGA 140

Query: 248 KVTQLLFLSVHSNNMSGPLPLISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLK 307
           K+ + L     +          +  L  +    N                 + L  +K+ 
Sbjct: 141 KIARALQELAVNKKAKN-----APPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMV 195

Query: 308 DNSLQGE-----IPDCWMSYQNLEILELSNNKFTGK----LPNSLGSLTSLIWLLLGKNR 358
            N ++ E     + +     Q L++L+L +N FT      L  +L S  +L  L L    
Sbjct: 196 QNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL 255

Query: 359 LS--GTIPVS--LKNC--TALESLDVGENEF----VGNIPTWTGERFSRMVVLILRSNNF 408
           LS  G   V           L++L +  NE     V  + T   E+   ++ L L  N F
Sbjct: 256 LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 55.9 bits (135), Expect = 2e-08
 Identities = 65/367 (17%), Positives = 118/367 (32%), Gaps = 90/367 (24%)

Query: 4   LEYLSLRNNKL--QGTID-SEALGNLTSISRLDLSLNT-GPEG--RIPRSMASLCNLKSI 57
           +E  SL+ + +  +        L    S+  + LS NT G E    +  ++AS  +L+  
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 58  NLRGVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSI 117
               +   +   EI                         L   L +   L  + L++N+ 
Sbjct: 66  EFSDIFTGRVKDEIP---EAL----------------RLLLQALLKCPKLHTVRLSDNAF 106

Query: 118 ----VGPIPQSLGHLSNLRVLQIYNNKLN--------GTLSEIHFS----NLTKLSWFRV 161
                 P+   L   + L  L ++NN L           L E+  +    N   L     
Sbjct: 107 GPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIIC 166

Query: 162 GGNKLTLE-VRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPI 220
           G N+L    ++          A  F +              + L  + ++ +G+      
Sbjct: 167 GRNRLENGSMKE--------WAKTFQSH-------------RLLHTVKMVQNGIRPEGIE 205

Query: 221 RFLKSAFQ----LKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNNMSGPLPLISSNLVYL 276
             L         LK LDL  N      T     +  L +++ S            NL  L
Sbjct: 206 HLLLEGLAYCQELKVLDLQDN----TFTH--LGSSALAIALKSW----------PNLREL 249

Query: 277 DLSNNSFSGSVSHYLCY--RINEPKSLIGLKLKDNSLQGE----IPDCWMS-YQNLEILE 329
            L++   S   +  +       E   L  L+L+ N ++ +    +         +L  LE
Sbjct: 250 GLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLE 309

Query: 330 LSNNKFT 336
           L+ N+F+
Sbjct: 310 LNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 51.6 bits (124), Expect = 4e-07
 Identities = 27/198 (13%), Positives = 58/198 (29%), Gaps = 34/198 (17%)

Query: 3   HLEYLSLRNNKLQGTID---------SEALGNLTSISRLDLSLNT-GPEG--RIPRSMAS 50
            LE     +       D          +AL     +  + LS N  GP     +   ++ 
Sbjct: 61  DLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSK 120

Query: 51  LCNLKSINLR--------GVHLSQEISEILNIFSGCVSIELESLDLRSSSISG----HLT 98
              L+ + L         G  +++ + E+        +  L S+    + +         
Sbjct: 121 HTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWA 180

Query: 99  DQLGQFKNLDNLDLANNSI-----VGPIPQSLGHLSNLRVLQIYNNKLNGT----LSEIH 149
                 + L  + +  N I        + + L +   L+VL + +N         L+   
Sbjct: 181 KTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIA- 239

Query: 150 FSNLTKLSWFRVGGNKLT 167
             +   L    +    L+
Sbjct: 240 LKSWPNLRELGLNDCLLS 257

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 45.9 bits (109), Expect = 3e-05
 Identities = 44/322 (13%), Positives = 93/322 (28%), Gaps = 78/322 (24%)

Query: 3   HLEYLSLRNNKL--QGTID-SEALGNLTSISRLDLSLNTG--PEGRIPRSMASLC----- 52
            ++ + L  N +  +     SE + +   +   + S       +  IP ++  L      
Sbjct: 33  SVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLK 92

Query: 53  --NLKSINLRGVHLSQE-ISEILNIFSGCVSIELESLDLRSSSIS-------------GH 96
              L ++ L            +++  S      LE L L ++ +                
Sbjct: 93  CPKLHTVRLSDNAFGPTAQEPLIDFLSKHTP--LEHLYLHNNGLGPQAGAKIARALQELA 150

Query: 97  LTDQLGQFKNLDNLDLANNSI----VGPIPQSLGHLSNLRVLQIYNNKLN-----GTLSE 147
           +  +      L ++    N +    +    ++      L  +++  N +        L E
Sbjct: 151 VNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLE 210

Query: 148 IHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYL 207
              +   +L    +  N  T              AL              L S  +L+ L
Sbjct: 211 G-LAYCQELKVLDLQDNTFTHLG---------SSALA-----------IALKSWPNLREL 249

Query: 208 NLLNSGMSDLFPIRFLK-----SAFQLKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNNM 262
            L +  +S       +          L+ L L  N    +I       + L   +     
Sbjct: 250 GLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYN----EIEL--DAVRTLKTVIDEKM- 302

Query: 263 SGPLPLISSNLVYLDLSNNSFS 284
                    +L++L+L+ N FS
Sbjct: 303 --------PDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 41.6 bits (98), Expect = 6e-04
 Identities = 38/283 (13%), Positives = 86/283 (30%), Gaps = 49/283 (17%)

Query: 320 MSYQNLEILELSNNKFTGK----LPNSLGSLTSLIWLLLGKNRLS--GTIPVS--LKNCT 371
           M+  ++E   L  +  T +    +   L    S+  ++L  N +       +S  + +  
Sbjct: 1   MARFSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKK 60

Query: 372 ALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNN 431
            LE  +  +  F G +     E                  L   L     L  + L+DN 
Sbjct: 61  DLEIAEFSDI-FTGRVKDEIPEALR--------------LLLQALLKCPKLHTVRLSDNA 105

Query: 432 LFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNL 491
            FG  P     +   ++ ++          L L  + +  +  + ++             
Sbjct: 106 -FG--PTAQEPLIDFLSKHTPLEH------LYLHNNGLGPQAGAKIARALQELAVNKKAK 156

Query: 492 VKET----DVSRNNLT----KSIPLEMTNLKATQSLNFSHNSFTGR-----IPESIGAMR 538
                      RN L     K       + +   ++    N          + E +   +
Sbjct: 157 NAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQ 216

Query: 539 SLESIDFSVNQLSGE----IPQSMSNLMSLNHLNLSNNKLTGK 577
            L+ +D   N  +      +  ++ +  +L  L L++  L+ +
Sbjct: 217 ELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSAR 259

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 55.4 bits (134), Expect = 1e-08
 Identities = 48/180 (26%), Positives = 70/180 (38%), Gaps = 38/180 (21%)

Query: 202 KHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNN 261
             +Q  N  NS +  L  ++F      LK L L  NQ    ++ L  +T+L  LSV+ N 
Sbjct: 41  SGVQNFNGDNSNIQSLAGMQFFT---NLKELHLSHNQIS-DLSPLKDLTKLEELSVNRNR 96

Query: 262 MSGPLPLISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMS 321
           +     + S+ L  L L NN             + +  SLI LK                
Sbjct: 97  LKNLNGIPSACLSRLFLDNN------------ELRDTDSLIHLK---------------- 128

Query: 322 YQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGEN 381
             NLEIL + NNK    +   LG L+ L  L L  N ++ T    L     +  +D+   
Sbjct: 129 --NLEILSIRNNKLK-SIVM-LGFLSKLEVLDLHGNEITNTGG--LTRLKKVNWIDLTGQ 182

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 54.3 bits (131), Expect = 4e-08
 Identities = 39/168 (23%), Positives = 68/168 (40%), Gaps = 23/168 (13%)

Query: 1   FIHLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLR 60
             +    +L    +    D  +   L+ +   +   +      I +S+A +      NL+
Sbjct: 18  LANAVKQNLGKQSVT---DLVSQKELSGVQNFNGDNS-----NI-QSLAGMQFFT--NLK 66

Query: 61  GVHLSQ-EISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVG 119
            +HLS  +IS++  +        LE L +  + +             L  L L NN +  
Sbjct: 67  ELHLSHNQISDLSPL-KDLTK--LEELSVNRNRLK---NLNGIPSACLSRLFLDNNELRD 120

Query: 120 PIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLT 167
               SL HL NL +L I NNKL  ++  +    L+KL    + GN++T
Sbjct: 121 --TDSLIHLKNLEILSIRNNKLK-SIVML--GFLSKLEVLDLHGNEIT 163

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 43/288 (14%), Positives = 86/288 (29%), Gaps = 62/288 (21%)

Query: 9   LRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEI 68
            R   +           L +  + +L            S   L  +++ N      +  I
Sbjct: 4   QRPTPIN---QVFPDPGLANAVKQNLGKQ---SVTDLVSQKELSGVQNFNGD----NSNI 53

Query: 69  SEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHL 128
             +  +        L+ L L  + IS      L     L+ L +  N +     ++L  +
Sbjct: 54  QSLAGMQF---FTNLKELHLSHNQISD--LSPLKDLTKLEELSVNRNRL-----KNLNGI 103

Query: 129 S--NLRVLQIYNNKLNGTLSEI-HFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQLVALGF 185
               L  L + NN+    L +     +L  L    +  NKL        I          
Sbjct: 104 PSACLSRLFLDNNE----LRDTDSLIHLKNLEILSIRNNKLKS------IVM-------- 145

Query: 186 HNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQ-FHGQIT 244
                       L     L+ L+L  + +++   +  LK    + ++DL   +  +  + 
Sbjct: 146 ------------LGFLSKLEVLDLHGNEITNTGGLTRLKK---VNWIDLTGQKCVNEPVK 190

Query: 245 DLTKVTQLLFLSVHSNNMSGPLPLISSNLVYLDL----SNNSFSGSVS 288
              ++     +         P   IS+   Y+D         ++  VS
Sbjct: 191 YQPELYITNTVKDPDGRWISPYY-ISNGGSYVDGCVLWELPVYTDEVS 237

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 31/134 (23%), Positives = 51/134 (38%), Gaps = 12/134 (8%)

Query: 299 KSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNR 358
            + +   L   S+   +    +S   ++     N+     L   +   T+L  L L  N+
Sbjct: 19  ANAVKQNLGKQSVTDLVSQKELS--GVQNFNGDNSNIQ-SLAG-MQFFTNLKELHLSHNQ 74

Query: 359 LSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCD 418
           +S   P  LK+ T LE L V  N     +    G   + +  L L +N         L  
Sbjct: 75  ISDLSP--LKDLTKLEELSVNRN----RLKNLNGIPSACLSRLFLDNNELRDTDS--LIH 126

Query: 419 LAFLQILDLADNNL 432
           L  L+IL + +N L
Sbjct: 127 LKNLEILSIRNNKL 140

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 41.2 bits (97), Expect = 6e-04
 Identities = 32/178 (17%), Positives = 66/178 (37%), Gaps = 39/178 (21%)

Query: 1   FIHLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLR 60
           F +L+ L L +N++    D   L +LT +  L ++ N     R+     +L  + S  L 
Sbjct: 62  FTNLKELHLSHNQIS---DLSPLKDLTKLEELSVNRN-----RL----KNLNGIPSACLS 109

Query: 61  GVHLS-QEISEILNIFSGCVSIELESLDLRSSSIS-----GHLT---------------D 99
            + L   E+ +  ++     +  LE L +R++ +      G L+                
Sbjct: 110 RLFLDNNELRDTDSL-IHLKN--LEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNTG 166

Query: 100 QLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLS 157
            L + K ++ +DL     V    + + +   L +     +     +S  + SN     
Sbjct: 167 GLTRLKKVNWIDLTGQKCV---NEPVKYQPELYITNTVKDPDGRWISPYYISNGGSYV 221

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 56.3 bits (135), Expect = 2e-08
 Identities = 52/353 (14%), Positives = 102/353 (28%), Gaps = 37/353 (10%)

Query: 240 HGQITDLTKVTQLLFLSVHSNNMSGPLPLISSNLVYLDLSNNSFSGSVSHYLCYRINEPK 299
             +  D+     +       +        + S +  L L  +    SV        N P 
Sbjct: 238 RAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPS 297

Query: 300 SLIGLKLKDNSLQGEIPD----CWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLG 355
            +    L   SL  ++P        +  + +   +              +   L    L 
Sbjct: 298 HVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELS 357

Query: 356 KNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTR 415
             + +  +   L++C  L+ L+                     ++ I+       PL   
Sbjct: 358 VEKST-VLQSELESCKELQELEP---------------ENKWCLLTIILLMRALDPLLYE 401

Query: 416 LCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKAS 475
              L +   L   D      +    +      +      +  + L L       LT    
Sbjct: 402 KETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHL---AHKDLTV--- 455

Query: 476 VVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIG 535
                  + + E L LV   D+S N L  ++P  +  L+  + L  S N+    +   + 
Sbjct: 456 -------LCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVDG-VA 505

Query: 536 AMRSLESIDFSVNQLSG-EIPQSMSNLMSLNHLNLSNNKLTGKIPSSTQLQSF 587
            +  L+ +    N+L      Q + +   L  LNL  N L  +     +L   
Sbjct: 506 NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 558

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 51.3 bits (122), Expect = 8e-07
 Identities = 57/342 (16%), Positives = 105/342 (30%), Gaps = 21/342 (6%)

Query: 272 NLVYLDLSNNS----FSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEI 327
           N  + D ++ S        +     + +     +   +   +               L +
Sbjct: 217 NAFFTDPNDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLL 276

Query: 328 LELSNNKFTGKLPNSLGSLTSLIWLL-LGKNRLSGTIPVSLKNCTALESLDVGENEFVGN 386
           +                +  S +WL  L    L+  +P          S    E   + +
Sbjct: 277 MVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKD 336

Query: 387 IPTWTGERFSRMVVLILR--SNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNIT 444
            P       +    L     S      L + L     LQ L+  +     TI   +  + 
Sbjct: 337 RPECWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALD 396

Query: 445 GMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTK 504
            ++      +       +       L +  S      ++   E  + V+   ++  +LT 
Sbjct: 397 PLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYAD-VRVLHLAHKDLTV 455

Query: 505 SIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSL 564
              LE   L     L+ SHN     +P ++ A+R LE +  S N L   +   ++NL  L
Sbjct: 456 LCHLE--QLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRL 510

Query: 565 NHLNLSNNKLT-----GKIPSSTQLQSFDASSFTGNDLCGAP 601
             L L NN+L        + S  +L   +     GN LC   
Sbjct: 511 QELLLCNNRLQQSAAIQPLVSCPRLVLLN---LQGNSLCQEE 549

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 50.1 bits (119), Expect = 2e-06
 Identities = 28/169 (16%), Positives = 60/169 (35%), Gaps = 6/169 (3%)

Query: 1   FIHLEYLSLRNNKLQG-TIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINL 59
              L  + L    L     + E L   +++  +D       +    + +     LK    
Sbjct: 382 KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYA 441

Query: 60  RGVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVG 119
               L     ++  +      + +  LDL  + +   L   L   + L+ L  ++N++  
Sbjct: 442 DVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN 500

Query: 120 PIPQSLGHLSNLRVLQIYNNKLNGTLSEI-HFSNLTKLSWFRVGGNKLT 167
            +   + +L  L+ L + NN+L    + I    +  +L    + GN L 
Sbjct: 501 -VD-GVANLPRLQELLLCNNRLQ-QSAAIQPLVSCPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 49.4 bits (117), Expect = 3e-06
 Identities = 36/242 (14%), Positives = 73/242 (30%), Gaps = 54/242 (22%)

Query: 12  NKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEISEI 71
            +LQ          LT I  +        E    +  ++L  +  +    +   +    +
Sbjct: 372 KELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLL 431

Query: 72  LNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNL 131
            N        ++  L L    ++  +   L Q   + +LDL++N +   +P +L  L  L
Sbjct: 432 ENSVLKMEYADVRVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRA-LPPALAALRCL 488

Query: 132 RVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQLVALGFHNCYVG 191
            VLQ  +N L   +  +   NL +L    +  N+L                         
Sbjct: 489 EVLQASDNALE-NVDGVA--NLPRLQELLLCNNRLQ------------------------ 521

Query: 192 SRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQITDLTKVTQ 251
                                  + + P+        L  L+L  N    +     ++ +
Sbjct: 522 ---------------------QSAAIQPLVSCPR---LVLLNLQGNSLCQEEGIQERLAE 557

Query: 252 LL 253
           +L
Sbjct: 558 ML 559

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 45.1 bits (106), Expect = 6e-05
 Identities = 37/256 (14%), Positives = 72/256 (28%), Gaps = 39/256 (15%)

Query: 97  LTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKL 156
                   + L   +L+       +   L     L+ L+  N     T+  +    L  L
Sbjct: 341 WCRDSATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTI-ILLMRALDPL 398

Query: 157 SWFRVGGNKLT-LEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMS 215
            + +      + L+     + P +   L                    ++ L+L +  ++
Sbjct: 399 LYEKETLQYFSTLKA----VDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT 454

Query: 216 DLFPIRFLKSAFQLKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNNMSGPLPLIS-SNLV 274
            L  +  L     +  LDL  N+       L  +  L  L    N +     + +   L 
Sbjct: 455 VLCHLEQLLL---VTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQ 511

Query: 275 YLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNK 334
            L L NN            R+ +  ++  L                S   L +L L  N 
Sbjct: 512 ELLLCNN------------RLQQSAAIQPLV---------------SCPRLVLLNLQGNS 544

Query: 335 FTGKLPNSLGSLTSLI 350
              +       L  ++
Sbjct: 545 LC-QEEGIQERLAEML 559

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 54.1 bits (130), Expect = 6e-08
 Identities = 36/146 (24%), Positives = 55/146 (37%), Gaps = 14/146 (9%)

Query: 3   HLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSM-ASLCNLKSINLRG 61
           +L  L L +N L   I SEA   + ++  LDLS N      +   + + L  L+ + L  
Sbjct: 65  NLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSN--HLHTLDEFLFSDLQALEVLLLYN 121

Query: 62  VHLSQEISEILNIFSGCVSIELESLDLRS---SSISGHLTDQLGQFKNLDNLDLANNSIV 118
            H+   +    N F       L+ L L     S     L     +   L  LDL++N + 
Sbjct: 122 NHI-VVVDR--NAFEDMAQ--LQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176

Query: 119 GPIPQSLGHLSNL--RVLQIYNNKLN 142
                 L  L       L ++NN L 
Sbjct: 177 KLPLTDLQKLPAWVKNGLYLHNNPLE 202

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 49.8 bits (119), Expect = 1e-06
 Identities = 41/173 (23%), Positives = 65/173 (37%), Gaps = 17/173 (9%)

Query: 269 ISSNLVYLDLSNNSFS----GSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQN 324
           + S    LDLS+N+ S          L        +L  L L  N L     + ++   N
Sbjct: 37  LPSYTALLDLSHNNLSRLRAEWTPTRL-------TNLHSLLLSHNHLNFISSEAFVPVPN 89

Query: 325 LEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFV 384
           L  L+LS+N            L +L  LLL  N +      + ++   L+ L + +N+  
Sbjct: 90  LRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS 149

Query: 385 GNIPTWT---GERFSRMVVLILRSNNFHGPLPTRLCDLAFL--QILDLADNNL 432
              P      G +  ++++L L SN       T L  L       L L +N L
Sbjct: 150 -RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPL 201

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 47.1 bits (112), Expect = 1e-05
 Identities = 39/148 (26%), Positives = 57/148 (38%), Gaps = 17/148 (11%)

Query: 27  TSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVSIELESL 86
           +  + LDLS N     R   +   L NL S+ L   HL   IS     F    +  L  L
Sbjct: 39  SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHL-NFISS--EAFVPVPN--LRYL 93

Query: 87  DLRS---SSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKL-- 141
           DL S    ++   L   L     L+ L L NN IV     +   ++ L+ L +  N++  
Sbjct: 94  DLSSNHLHTLDEFLFSDLQ---ALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR 150

Query: 142 --NGTLSEIHFSNLTKLSWFRVGGNKLT 167
                +     + L KL    +  NKL 
Sbjct: 151 FPVELIK--DGNKLPKLMLLDLSSNKLK 176

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 45.2 bits (107), Expect = 4e-05
 Identities = 38/187 (20%), Positives = 60/187 (32%), Gaps = 31/187 (16%)

Query: 271 SNLVYLDLSNNSFS----GSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLE 326
           +NL  L LS+N  +     +             +L  L L  N L       +   Q LE
Sbjct: 64  TNLHSLLLSHNHLNFISSEAFVPV--------PNLRYLDLSSNHLHTLDEFLFSDLQALE 115

Query: 327 ILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIP----VSLKNCTALESLDVGENE 382
           +L L NN       N+   +  L  L L +N++S   P            L  LD+  N 
Sbjct: 116 VLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSN- 173

Query: 383 FVGNIPTWTGERFSRMVVLILRSNNFHG-PLPTRLCD------LAFLQILDLADNNLFGT 435
               +         ++   +      H  PL    CD       +  Q   L+    F  
Sbjct: 174 ---KLKKLPLTDLQKLPAWVKNGLYLHNNPL---ECDCKLYQLFSHWQYRQLSSVMDFQE 227

Query: 436 IPKCINN 442
              C+++
Sbjct: 228 DLYCMHS 234

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 53.6 bits (129), Expect = 6e-08
 Identities = 42/164 (25%), Positives = 66/164 (40%), Gaps = 13/164 (7%)

Query: 270 SSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILE 329
            ++ + ++    + + ++        + PK    L L +N L        M Y  L  L 
Sbjct: 9   VASHLEVNCDKRNLT-ALP------PDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 330 LSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPT 389
           L   + T KL    G+L  L  L L  N+L  ++P+  +   AL  LDV  N    ++P 
Sbjct: 62  LDRAELT-KLQ-VDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPL 117

Query: 390 WTGERFSRMVVLILRSNNFHGPLPTRLCD-LAFLQILDLADNNL 432
                   +  L L+ N     LP  L      L+ L LA+NNL
Sbjct: 118 GALRGLGELQELYLKGNELKT-LPPGLLTPTPKLEKLSLANNNL 160

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 46.3 bits (110), Expect = 2e-05
 Identities = 47/239 (19%), Positives = 80/239 (33%), Gaps = 50/239 (20%)

Query: 51  LCNLKSINLRGVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNL 110
           + +   +N    +L   +    ++       +   L L  + +       L  +  L  L
Sbjct: 9   VASHLEVNCDKRNL-TALPP--DLPK-----DTTILHLSENLLYTFSLATLMPYTRLTQL 60

Query: 111 DLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEV 170
           +L    +     Q  G L  L  L + +N+L  +L  +    L  L+   V  N+LT   
Sbjct: 61  NLDRAELT--KLQVDGTLPVLGTLDLSHNQLQ-SLPLL-GQTLPALTVLDVSFNRLTS-- 114

Query: 171 RHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLK 230
               +P   L  LG                   LQ L L  + +  L P   L    +L+
Sbjct: 115 ----LPLGALRGLG------------------ELQELYLKGNELKTL-PPGLLTPTPKLE 151

Query: 231 FLDLGLNQFHGQITDL-----TKVTQLLFLSVHSNNMSGPLP---LISSNLVYLDLSNN 281
            L L  N     +T+L       +  L  L +  N++   +P     S  L +  L  N
Sbjct: 152 KLSLANN----NLTELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 45.9 bits (109), Expect = 2e-05
 Identities = 38/168 (22%), Positives = 51/168 (30%), Gaps = 41/168 (24%)

Query: 3   HLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGV 62
            L  L+L   +L      +  G L  +  LDLS N                L+S+ L G 
Sbjct: 56  RLTQLNLDRAELTKL---QVDGTLPVLGTLDLSHN---------------QLQSLPLLGQ 97

Query: 63  HLSQEISEILNIFSGCVSIELESLDLRS---SSISGHLTDQLGQFKNLDNLDLANNSIVG 119
            L                  L  LD+     +S+       LG    L  L L  N +  
Sbjct: 98  TLPA----------------LTVLDVSFNRLTSLPLGALRGLG---ELQELYLKGNELKT 138

Query: 120 PIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLT 167
             P  L     L  L + NN L   L     + L  L    +  N L 
Sbjct: 139 LPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY 185

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 45.5 bits (108), Expect = 2e-05
 Identities = 43/186 (23%), Positives = 64/186 (34%), Gaps = 18/186 (9%)

Query: 250 TQLLFLSVHSNNMSGPLPLI---SSNLVYLDLSNNSFSG-SVSHYLCYRINEPKSLIGLK 305
           T +L L    N +           + L  L+L     +   V   L         L  L 
Sbjct: 33  TTILHL--SENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTL-------PVLGTLD 83

Query: 306 LKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPV 365
           L  N LQ  +P    +   L +L++S N+ T     +L  L  L  L L  N L  T+P 
Sbjct: 84  LSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPP 141

Query: 366 SL-KNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQI 424
            L      LE L +  N     +P         +  L+L+ N+ +  +P        L  
Sbjct: 142 GLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPF 199

Query: 425 LDLADN 430
             L  N
Sbjct: 200 AFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 44.3 bits (105), Expect = 6e-05
 Identities = 47/251 (18%), Positives = 79/251 (31%), Gaps = 79/251 (31%)

Query: 324 NLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEF 383
           +  IL LS N        +L   T L  L L +  L+  + V       L +LD+  N+ 
Sbjct: 32  DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD-GTLPVLGTLDLSHNQ- 88

Query: 384 VGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNI 443
                              L+S      LP     L  L +LD++ N L  ++P      
Sbjct: 89  -------------------LQS------LPLLGQTLPALTVLDVSFNRL-TSLP------ 116

Query: 444 TGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLT 503
                  +     +            L E                L L        N L 
Sbjct: 117 -----LGALRGLGE------------LQE----------------LYL------KGNELK 137

Query: 504 KSIPLEM-TNLKATQSLNFSHNSFTGRIPESI-GAMRSLESIDFSVNQLSGEIPQSMSNL 561
            ++P  + T     + L+ ++N+ T  +P  +   + +L+++    N L   IP+     
Sbjct: 138 -TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGS 194

Query: 562 MSLNHLNLSNN 572
             L    L  N
Sbjct: 195 HLLPFAFLHGN 205

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 52.3 bits (126), Expect = 1e-07
 Identities = 31/253 (12%), Positives = 74/253 (29%), Gaps = 51/253 (20%)

Query: 324 NLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPV-SLKNCTALESLDVGENE 382
           + + L+L          ++  +L ++  + +  +     +   S  N + +  +++    
Sbjct: 32  STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91

Query: 383 FVGNIPTWTGERFSRMVVLILRSNNFHG-PLPTRLCDLAFLQILDLADNNLFGTIPKCIN 441
            +  I     +    +  L + +      P  T++       IL++ DN    +IP    
Sbjct: 92  NLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIP---- 147

Query: 442 NITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNN 501
                   N+F                                   + N      +  N 
Sbjct: 148 -------VNAF---------------------------------QGLCNETLTLKLYNNG 167

Query: 502 LTKSIPLEMTNLKATQSLNFSHNSFTGRIPESI--GAMRSLESIDFSVNQLSGEIP-QSM 558
            T S+     N     ++  + N +   I +    G       +D S   ++  +P + +
Sbjct: 168 FT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSKGL 225

Query: 559 SNLMSLNHLNLSN 571
            +L  L   N   
Sbjct: 226 EHLKELIARNTWT 238

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 51.9 bits (125), Expect = 1e-07
 Identities = 31/214 (14%), Positives = 67/214 (31%), Gaps = 38/214 (17%)

Query: 82  ELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIP-QSLGHLSNLRVLQIYNNK 140
             ++L L  + +    +       N+  + ++ +  +  +   S  +LS +  ++I N +
Sbjct: 32  STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91

Query: 141 LNGTLSEIH---FSNLTKLSWFRVGGNKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQW 197
               L+ I       L  L +  +    L +       P                     
Sbjct: 92  N---LTYIDPDALKELPLLKFLGIFNTGLKM------FPDLTK----------------- 125

Query: 198 LHSQKHLQYLNLL-NSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQITDLT-KVTQLLFL 255
           ++S      L +  N  M+ +    F     +   L L  N F   +       T+L  +
Sbjct: 126 VYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAV 184

Query: 256 SVHSNNMSGPLPL-----ISSNLVYLDLSNNSFS 284
            ++ N     +       + S    LD+S  S +
Sbjct: 185 YLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 37/252 (14%), Positives = 72/252 (28%), Gaps = 58/252 (23%)

Query: 106 NLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNK 165
           +   L L    +      +  +L N+  + +  +     L    F NL+K++   +   +
Sbjct: 32  STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91

Query: 166 LTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKS 225
               +  D                              L++L + N+G+     +  + S
Sbjct: 92  NLTYIDPDA----------LKEL-------------PLLKFLGIFNTGLKMFPDLTKVYS 128

Query: 226 AFQLKFLDLGLNQF-----HGQITDLTKVTQLLFLSVHSNNMSGPLPLISSNLVYLDLSN 280
                 L++  N +           L   T  L L  ++N         +S      +  
Sbjct: 129 TDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKL--YNNG-------FTS------VQG 173

Query: 281 NSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMS--YQNLEILELSNNKFTGK 338
            +F+G+              L  + L  N     I        Y    +L++S    T  
Sbjct: 174 YAFNGT-------------KLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTAL 220

Query: 339 LPNSLGSLTSLI 350
               L  L  LI
Sbjct: 221 PSKGLEHLKELI 232

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 47.3 bits (113), Expect = 6e-06
 Identities = 28/158 (17%), Positives = 53/158 (33%), Gaps = 11/158 (6%)

Query: 3   HLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIP--RSMASLCNLKSINLR 60
            + ++ +RN +    ID +AL  L  +  L +          P    + S      + + 
Sbjct: 81  KVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNT--GLKMFPDLTKVYSTDIFFILEIT 138

Query: 61  GVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGP 120
                  I    N F G  + E  +L L ++  +  +         LD + L  N  +  
Sbjct: 139 DNPYMTSIPV--NAFQGLCN-ETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTV 194

Query: 121 IPQSL--GHLSNLRVLQIYNNKLNGTLSEIHFSNLTKL 156
           I +    G  S   +L +    +   L      +L +L
Sbjct: 195 IDKDAFGGVYSGPSLLDVSQTSVT-ALPSKGLEHLKEL 231

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 38/167 (22%), Positives = 70/167 (41%), Gaps = 14/167 (8%)

Query: 4   LEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVH 63
            + L L    L+ TI S A  NL +ISR+ +S++   +     S  +L  +  I +R   
Sbjct: 33  TQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN-- 89

Query: 64  LSQEISEI-LNIFSGCVSIELESLDLRSSSISGHLTDQ--LGQFKNLDNLDLANNSIVGP 120
            ++ ++ I  +         L+ L + ++ +     D   +        L++ +N  +  
Sbjct: 90  -TRNLTYIDPDALKELPL--LKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTS 145

Query: 121 IP-QSLGHLSN-LRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNK 165
           IP  +   L N    L++YNN    ++    F N TKL    +  NK
Sbjct: 146 IPVNAFQGLCNETLTLKLYNNGFT-SVQGYAF-NGTKLDAVYLNKNK 190

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 49.7 bits (119), Expect = 5e-07
 Identities = 35/161 (21%), Positives = 63/161 (39%), Gaps = 12/161 (7%)

Query: 18  IDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEISEILNIFSG 77
            +       T   +++L     P  ++  ++++L   K + L        I +I ++ SG
Sbjct: 14  FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALST----NNIEKISSL-SG 68

Query: 78  CVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIY 137
                L  L L  + I   + +       L+ L ++ N I       +  L NLRVL + 
Sbjct: 69  ME--NLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA--SLSGIEKLVNLRVLYMS 123

Query: 138 NNKLNGTLSEI-HFSNLTKLSWFRVGGNKLTLEVRHDWIPP 177
           NNK+     EI   + L KL    + GN L  + + +    
Sbjct: 124 NNKIT-NWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATS 163

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 41.2 bits (97), Expect = 4e-04
 Identities = 30/132 (22%), Positives = 53/132 (40%), Gaps = 10/132 (7%)

Query: 301 LIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLS 360
            + L      ++ ++     + +  + L LS N    K+ + L  + +L  L LG+N + 
Sbjct: 27  KVELHGMIPPIE-KMDATLSTLKACKHLALSTNNIE-KISS-LSGMENLRILSLGRNLIK 83

Query: 361 GTIPVSLKNCTALESLDVGENEFVGNIPTWTG-ERFSRMVVLILRSNNFHGPLP-TRLCD 418
             I         LE L +  N     I + +G E+   + VL + +N         +L  
Sbjct: 84  -KIENLDAVADTLEELWISYN----QIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAA 138

Query: 419 LAFLQILDLADN 430
           L  L+ L LA N
Sbjct: 139 LDKLEDLLLAGN 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 40.4 bits (95), Expect = 6e-04
 Identities = 30/147 (20%), Positives = 62/147 (42%), Gaps = 27/147 (18%)

Query: 1   FIHLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLR 60
               ++L+L  N ++  I   +L  + ++  L L  N      I + + +L  +    L 
Sbjct: 47  LKACKHLALSTNNIE-KI--SSLSGMENLRILSLGRN-----LI-KKIENLDAVAD-TLE 96

Query: 61  GVHLSQ-EISEILNIFSGCVSIELESLDLRSSSIS--GHLTDQLGQFKNLDNLDLANNSI 117
            + +S  +I+ +  I    V+  L  L + ++ I+  G + D+L     L++L LA N +
Sbjct: 97  ELWISYNQIASLSGI-EKLVN--LRVLYMSNNKITNWGEI-DKLAALDKLEDLLLAGNPL 152

Query: 118 VGPIPQS----------LGHLSNLRVL 134
                ++          +  L NL+ L
Sbjct: 153 YNDYKENNATSEYRIEVVKRLPNLKKL 179

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 45.8 bits (109), Expect = 5e-06
 Identities = 25/116 (21%), Positives = 48/116 (41%), Gaps = 8/116 (6%)

Query: 25  NLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVSIELE 84
             + +  L L  +   EG++         L+ ++   V L+      +         +L+
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS-----IANLPKL--NKLK 67

Query: 85  SLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGP-IPQSLGHLSNLRVLQIYNN 139
            L+L  + +SG L     +  NL +L+L+ N I      + L  L NL+ L ++N 
Sbjct: 68  KLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 44.7 bits (106), Expect = 1e-05
 Identities = 19/118 (16%), Positives = 41/118 (34%), Gaps = 6/118 (5%)

Query: 50  SLCNLKSINLRGVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDN 109
           +  ++K + L          ++  +        LE L   +  ++      L +   L  
Sbjct: 15  TPSDVKELVLDN--SRSNEGKLEGLTDEFEE--LEFLSTINVGLTS--IANLPKLNKLKK 68

Query: 110 LDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLT 167
           L+L++N + G +        NL  L +  NK+    +      L  L    +   ++T
Sbjct: 69  LELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT 126

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 3/91 (3%)

Query: 294 RINEPKSLIGLKLKDNSLQ-GEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWL 352
           R   P  +  L L ++    G++      ++ LE L   N   T  + N L  L  L  L
Sbjct: 12  RNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SIAN-LPKLNKLKKL 69

Query: 353 LLGKNRLSGTIPVSLKNCTALESLDVGENEF 383
            L  NR+SG + V  + C  L  L++  N+ 
Sbjct: 70  ELSDNRVSGGLEVLAEKCPNLTHLNLSGNKI 100

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 46.2 bits (110), Expect = 7e-06
 Identities = 24/112 (21%), Positives = 43/112 (38%), Gaps = 13/112 (11%)

Query: 50  SLCNLKSINLRGVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDN 109
           +    + ++LRG     +I  I N+ +     + +++D   + I     D     + L  
Sbjct: 17  NAVRDRELDLRG----YKIPVIENLGATLD--QFDAIDFSDNEIRKL--DGFPLLRRLKT 68

Query: 110 LDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEI----HFSNLTKLS 157
           L + NN I          L +L  L + NN L   L ++       +LT L 
Sbjct: 69  LLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLC 119

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 40.4 bits (95), Expect = 5e-04
 Identities = 16/89 (17%), Positives = 30/89 (33%), Gaps = 3/89 (3%)

Query: 294 RINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLL 353
           +         L L+   +   I +   +    + ++ S+N+   KL      L  L  LL
Sbjct: 14  QYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KLDG-FPLLRRLKTLL 70

Query: 354 LGKNRLSGTIPVSLKNCTALESLDVGENE 382
           +  NR+        +    L  L +  N 
Sbjct: 71  VNNNRICRIGEGLDQALPDLTELILTNNS 99

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 45.9 bits (109), Expect = 7e-06
 Identities = 24/118 (20%), Positives = 44/118 (37%), Gaps = 6/118 (5%)

Query: 50  SLCNLKSINLRGVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDN 109
           +   ++ + L     +    +I  + +  V+  LE L L +  +       L +   L  
Sbjct: 22  TPAAVRELVLDNCKSN--DGKIEGLTAEFVN--LEFLSLINVGLIS--VSNLPKLPKLKK 75

Query: 110 LDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLT 167
           L+L+ N I G +      L NL  L +  NKL    +      L  L    +   ++T
Sbjct: 76  LELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVT 133

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 45.9 bits (109), Expect = 7e-06
 Identities = 26/116 (22%), Positives = 47/116 (40%), Gaps = 8/116 (6%)

Query: 25  NLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVSIELE 84
              ++  L L      +G+I    A   NL+ ++L  V L       ++         L+
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS-----VSNLPKLPK--LK 74

Query: 85  SLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGP-IPQSLGHLSNLRVLQIYNN 139
            L+L  + I G L     +  NL +L+L+ N +      + L  L  L+ L ++N 
Sbjct: 75  KLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 41.3 bits (97), Expect = 2e-04
 Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 2/75 (2%)

Query: 309 NSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLK 368
            S  G+I      + NLE L L N      + N L  L  L  L L +NR+ G + +  +
Sbjct: 35  KSNDGKIEGLTAEFVNLEFLSLINVGLI-SVSN-LPKLPKLKKLELSENRIFGGLDMLAE 92

Query: 369 NCTALESLDVGENEF 383
               L  L++  N+ 
Sbjct: 93  KLPNLTHLNLSGNKL 107

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 47.8 bits (113), Expect = 7e-06
 Identities = 21/99 (21%), Positives = 35/99 (35%), Gaps = 3/99 (3%)

Query: 82  ELESLDLRSSSISGHLTDQ-LGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNK 140
            L  L + +     HL  + L     L NL +  + +    P +      L  L +  N 
Sbjct: 32  NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91

Query: 141 LNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQ 179
           L  +LS      L+ L    + GN L       W+  ++
Sbjct: 92  LE-SLSWKTVQGLS-LQELVLSGNPLHCSCALRWLQRWE 128

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 46.7 bits (110), Expect = 2e-05
 Identities = 19/110 (17%), Positives = 34/110 (30%), Gaps = 7/110 (6%)

Query: 498 SRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIP-ESIGAMRSLESIDFSVNQLSGEIPQ 556
           +R+         +   +    L   +      +    +  +  L ++    + L    P 
Sbjct: 16  TRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPD 74

Query: 557 SMSNLMSLNHLNLSNNKLTGKIPSSTQLQSFDASSFTGNDLCGAPLPKNC 606
           +      L+ LNLS N L   +   T        S     L G PL  +C
Sbjct: 75  AFHFTPRLSRLNLSFNALE-SLSWKT----VQGLSLQELVLSGNPLHCSC 119

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 59/347 (17%), Positives = 115/347 (33%), Gaps = 51/347 (14%)

Query: 20  SEALGNLTSISRLDLSLNT-GPEGRIPRSMA---SLCNLKSINLRGVHLSQEISEILNIF 75
            E       ++ LDLSLN       +    A   +  ++ S+NL G  L  + S+ L   
Sbjct: 15  EEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQI 74

Query: 76  SGCVSIELESLDLRSSSISGHLTDQLGQF-----KNLDNLDLANNSI----VGPIPQSLG 126
              +   + SL+L  + +S   +D+L +        +  LDL  N           Q+  
Sbjct: 75  LAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFS 134

Query: 127 HL-SNLRVLQIYNNKLNGT----LSEIHFSNLTKLSWFRVGGNKLTLE-----VRHDWIP 176
           +L +++  L +  N L       L +I  +    ++   + GN L  +      +     
Sbjct: 135 NLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASI 194

Query: 177 PFQLVALGFHNCYVGSRFPQWL-----HSQKHLQYLNLLNSGMSDLFPIRFLKSAFQ--- 228
           P  + +L      +G +    L         H+  LNL  + +     +  LK       
Sbjct: 195 PASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS-LENLKLLKDSLK 253

Query: 229 -LKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNNMSGPLPLISSNLVYLDLSNNSFSGSV 287
            L+ + L  +     + +++K       +   N            ++ +D +      S 
Sbjct: 254 HLQTVYLDYD----IVKNMSKEQCKALGAAFPNI---------QKIILVDKNGKEIHPSH 300

Query: 288 SHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNK 334
           S  +   I E       K    SL  +    +       I +L+   
Sbjct: 301 SIPISNLIREL----SGKADVPSLLNQCLI-FAQKHQTNIEDLNIPD 342

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 24/162 (14%), Positives = 66/162 (40%), Gaps = 27/162 (16%)

Query: 3   HLEYLSLRNNKL--QGTID-SEALGNL-TSISRLDLSLNT-GPEG--RIPRSMASL-CNL 54
            +  L+LR N L  + + +  + L  +  +++ L+L  N    +    + + +AS+  ++
Sbjct: 139 SITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASV 198

Query: 55  KSINLRGVHLS----QEISEILNIFSGCVSIELESLDLRSSSISG----HLTDQLGQFKN 106
            S++L    L      E++ I +     +   + SL+L  + + G    +L       K+
Sbjct: 199 TSLDLSANLLGLKSYAELAYIFS----SIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKH 254

Query: 107 LDNLDLANNSI-------VGPIPQSLGHLSNLRVLQIYNNKL 141
           L  + L  + +          +  +  ++  + ++     ++
Sbjct: 255 LQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEI 296

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 41/173 (23%), Positives = 68/173 (39%), Gaps = 48/173 (27%)

Query: 3   HLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGV 62
            L  L L +NKLQ T+ +     L ++  L ++ N                L+++     
Sbjct: 62  KLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDN---------------KLQALP---- 101

Query: 63  HLSQEISEILNIFSGCVSIELESLDLRS---SSISGHLTDQLGQFKNLDNLDLANNSIVG 119
                    + +F   V+  L  L L      S+   + D L     L  L L  N +  
Sbjct: 102 ---------IGVFDQLVN--LAELRLDRNQLKSLPPRVFDSLT---KLTYLSLGYNEL-- 145

Query: 120 PIPQSLGH-----LSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLT 167
              QSL       L++L+ L++YNN+L   + E  F  LT+L   ++  N+L 
Sbjct: 146 ---QSLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLK 194

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 43.8 bits (104), Expect = 9e-05
 Identities = 33/111 (29%), Positives = 50/111 (45%), Gaps = 5/111 (4%)

Query: 324 NLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSL-KNCTALESLDVGENE 382
           + + L+L +NK +     +   LT L  L L  N+L  T+P  + K    LE+L V +N+
Sbjct: 38  DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNK 96

Query: 383 FVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCD-LAFLQILDLADNNL 432
               +P    ++   +  L L  N     LP R+ D L  L  L L  N L
Sbjct: 97  LQ-ALPIGVFDQLVNLAELRLDRNQLKS-LPPRVFDSLTKLTYLSLGYNEL 145

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 43.0 bits (102), Expect = 2e-04
 Identities = 46/169 (27%), Positives = 72/169 (42%), Gaps = 15/169 (8%)

Query: 269 ISSNLVYLDLSNNSFS---GSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNL 325
           I ++   LDL +N  S       H L         L  L L DN LQ      +   +NL
Sbjct: 35  IPADTKKLDLQSNKLSSLPSKAFHRL-------TKLRLLYLNDNKLQTLPAGIFKELKNL 87

Query: 326 EILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSL-KNCTALESLDVGENEFV 384
           E L +++NK           L +L  L L +N+L  ++P  +  + T L  L +G NE  
Sbjct: 88  ETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQ 146

Query: 385 GNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCD-LAFLQILDLADNNL 432
            ++P    ++ + +  L L +N     +P    D L  L+ L L +N L
Sbjct: 147 -SLPKGVFDKLTSLKELRLYNNQLKR-VPEGAFDKLTELKTLKLDNNQL 193

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 43.0 bits (102), Expect = 2e-04
 Identities = 50/222 (22%), Positives = 80/222 (36%), Gaps = 60/222 (27%)

Query: 4   LEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVH 63
            + L L++NKL  ++ S+A   LT +  L L+ N                L+++      
Sbjct: 39  TKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDN---------------KLQTLPA---- 78

Query: 64  LSQEISEILNIFSGCVSIELESLDLRS---SSISGHLTDQLGQFKNLDNLDLANNSIVGP 120
                     IF       LE+L +      ++   + DQL    NL  L L  N +   
Sbjct: 79  ---------GIFKELK--NLETLWVTDNKLQALPIGVFDQL---VNLAELRLDRNQL--- 121

Query: 121 IPQSL-----GHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWI 175
             +SL       L+ L  L +  N+L  +L +  F  LT L   R+  N+L        +
Sbjct: 122 --KSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLK------RV 172

Query: 176 PP--F----QLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLN 211
           P   F    +L  L   N  +         S + L+ L L  
Sbjct: 173 PEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQE 214

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 42.3 bits (100), Expect = 3e-04
 Identities = 50/217 (23%), Positives = 80/217 (36%), Gaps = 52/217 (23%)

Query: 106 NLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNK 165
           +   LDL +N +     ++   L+ LR+L + +NKL  TL    F  L  L    V  NK
Sbjct: 38  DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNK 96

Query: 166 LTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKS 225
           L        +P      L                   +L  L L  + +  L P      
Sbjct: 97  LQA------LPIGVFDQL------------------VNLAELRLDRNQLKSLPP-----R 127

Query: 226 AF----QLKFLDLGLNQFHGQITDL-----TKVTQLLFLSVHSNNMSGPLPLIS----SN 272
            F    +L +L LG N    ++  L      K+T L  L +++N +   +P  +    + 
Sbjct: 128 VFDSLTKLTYLSLGYN----ELQSLPKGVFDKLTSLKELRLYNNQLKR-VPEGAFDKLTE 182

Query: 273 LVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDN 309
           L  L L NN     V       +   + L  L+L++N
Sbjct: 183 LKTLKLDNNQLK-RVPEGAFDSL---EKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 40.7 bits (96), Expect = 8e-04
 Identities = 35/142 (24%), Positives = 57/142 (40%), Gaps = 19/142 (13%)

Query: 4   LEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLN---TGPEGRIPRSMASLCNLKSINLR 60
           LE L + +NKLQ  +       L +++ L L  N   + P         SL  L  ++L 
Sbjct: 87  LETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPR----VFDSLTKLTYLSLG 141

Query: 61  GVHLSQEISEILNIFSGCVSIELESLDLRS---SSISGHLTDQLGQFKNLDNLDLANNSI 117
              L Q + +   +F    S  L+ L L +     +     D+L +   L  L L NN +
Sbjct: 142 YNEL-QSLPK--GVFDKLTS--LKELRLYNNQLKRVPEGAFDKLTE---LKTLKLDNNQL 193

Query: 118 VGPIPQSLGHLSNLRVLQIYNN 139
                 +   L  L++LQ+  N
Sbjct: 194 KRVPEGAFDSLEKLKMLQLQEN 215

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 32/141 (22%), Positives = 54/141 (38%), Gaps = 12/141 (8%)

Query: 27  TSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVSIELESL 86
              + L L+ N             L  L+ IN     +  +I E    F G     +  +
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKI-TDIEE--GAFEGAS--GVNEI 86

Query: 87  DLRS---SSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNG 143
            L S    ++   +   L    +L  L L +N I      S   LS++R+L +Y+N++  
Sbjct: 87  LLTSNRLENVQHKMFKGLE---SLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQIT- 142

Query: 144 TLSEIHFSNLTKLSWFRVGGN 164
           T++   F  L  LS   +  N
Sbjct: 143 TVAPGAFDTLHSLSTLNLLAN 163

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.2 bits (106), Expect = 8e-05
 Identities = 46/308 (14%), Positives = 90/308 (29%), Gaps = 90/308 (29%)

Query: 50  SLCNLKSINLRGVHLSQ--EISEILNIFSGCVSIELESLDLRSSSISGH----------L 97
            L    + ++   H S      E+ ++    +    +  DL    ++ +          +
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ--DLPREVLTTNPRRLSIIAESI 337

Query: 98  TDQLGQFKNLDNLDLANNSIVGPIPQSLGHLS--NLR------------------VLQIY 137
            D L  + N  +++    + +  I  SL  L     R                  +L + 
Sbjct: 338 RDGLATWDNWKHVNCDKLTTI--IESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI 395

Query: 138 NNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDW-----IPPFQLVALGFH----NC 188
              +  +   +  + L K S       + T+ +         +      AL  H    + 
Sbjct: 396 WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI-PSIYLELKVKLENEYAL--HRSIVDH 452

Query: 189 YVGSR-FPQWLHSQKHL-----QYL-----NLLNSGMSDLFPIRFLKSAF-QLK------ 230
           Y   + F        +L      ++     N+ +     LF + FL   F + K      
Sbjct: 453 YNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDST 512

Query: 231 -------FLDL--GLNQFHGQITD-LTKVTQLL-----FLSVHSNNMSGPLPLISS---N 272
                   L+    L  +   I D   K  +L+     FL     N      LI S   +
Sbjct: 513 AWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEEN------LICSKYTD 566

Query: 273 LVYLDLSN 280
           L+ + L  
Sbjct: 567 LLRIALMA 574

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 6e-04
 Identities = 71/437 (16%), Positives = 138/437 (31%), Gaps = 108/437 (24%)

Query: 57  INLRGVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNS 116
           +NL+  +  + + E+L      +     S    SS+I   +     + + L       N 
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246

Query: 117 -IVGPIPQSLGHLSNLRVLQIYN---------------NKLNGT----LSEIHFS-NLTK 155
            +V      L ++ N +    +N               + L+      +S  H S  LT 
Sbjct: 247 LLV------LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP 300

Query: 156 -------LSWFRVGGNKLTLEVRHDWIPPFQ--LVALGFHNCYVGSRFPQWLHSQKHLQY 206
                  L +       L  EV      P +  ++A    +    + +  W H     + 
Sbjct: 301 DEVKSLLLKYLDCRPQDLPREVLT--TNPRRLSIIAESIRD--GLATWDNWKHVNCD-KL 355

Query: 207 LNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNNMSGPL 266
             ++ S ++ L P     + ++  F  L +      I   T +  L++  V  +++    
Sbjct: 356 TTIIESSLNVLEP-----AEYRKMFDRLSVFPPSAHIP--TILLSLIWFDVIKSDV---- 404

Query: 267 PLISSNLV-YLDLSNNSFSGSVSHYLCY------RINEP---KSLIG--LKLKDNSLQGE 314
            ++ + L  Y  +       ++S    Y        NE    +S++      K       
Sbjct: 405 MVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDL 464

Query: 315 IPDCWMSY------------QNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGT 362
           IP     Y            ++ E + L    F               + L  K R   T
Sbjct: 465 IPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVF-----------LDFRF-LEQKIRHDST 512

Query: 363 ---IPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNF---HGP--LPT 414
                 S+ N   L+ L   +     N P      + R+V  IL   +F        + +
Sbjct: 513 AWNASGSILN--TLQQLKFYKPYICDNDPK-----YERLVNAIL---DFLPKIEENLICS 562

Query: 415 RLCDLAFLQILDLADNN 431
           +  DL  L+I  +A++ 
Sbjct: 563 KYTDL--LRIALMAEDE 577

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 43.5 bits (103), Expect = 8e-05
 Identities = 35/163 (21%), Positives = 54/163 (33%), Gaps = 38/163 (23%)

Query: 5   EYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHL 64
             + L  N ++  I   A      + R+DLS N                +  +       
Sbjct: 35  TEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNN---------------QISELA-PDA-- 75

Query: 65  SQEISEILNIFSGCVSIELESLDLRS---SSISGHLTDQLGQFKNLDNLDLANNSIVGPI 121
                     F G     L SL L     + +   L + L     L  L L  N I    
Sbjct: 76  ----------FQGLR--SLNSLVLYGNKITELPKSLFEGLFS---LQLLLLNANKINCLR 120

Query: 122 PQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGN 164
             +   L NL +L +Y+NKL  T+++  FS L  +    +  N
Sbjct: 121 VDAFQDLHNLNLLSLYDNKLQ-TIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 30/128 (23%), Positives = 61/128 (47%), Gaps = 3/128 (2%)

Query: 304 LKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTI 363
           ++L+ N+++   P  +  Y+ L  ++LSNN+ +   P++   L SL  L+L  N+++  +
Sbjct: 37  IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-EL 95

Query: 364 PVSL-KNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFL 422
           P SL +   +L+ L +  N+ +  +     +    + +L L  N            L  +
Sbjct: 96  PKSLFEGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAI 154

Query: 423 QILDLADN 430
           Q + LA N
Sbjct: 155 QTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 40.4 bits (95), Expect = 8e-04
 Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 1/84 (1%)

Query: 84  ESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNG 143
             + L  ++I          +K L  +DL+NN I    P +   L +L  L +Y NK+  
Sbjct: 35  TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT- 93

Query: 144 TLSEIHFSNLTKLSWFRVGGNKLT 167
            L +  F  L  L    +  NK+ 
Sbjct: 94  ELPKSLFEGLFSLQLLLLNANKIN 117

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 44.2 bits (103), Expect = 8e-05
 Identities = 26/167 (15%), Positives = 69/167 (41%), Gaps = 20/167 (11%)

Query: 3   HLEYLSLRNNKL-QGTIDSEALGNLTSISRLDLSL---NTGPEGRIPR-----SMASLCN 53
           +L+ L + +  L    ++     +L ++ +L L +   + G +G +       S     N
Sbjct: 194 NLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPN 253

Query: 54  LKSINLRGVHLSQEISEILNIFSGCVSIELESLDLRSSSISG----HLTDQLGQFKNLDN 109
           LK + +        + E+       +  +LE++D+ +  ++      L D + + K+L  
Sbjct: 254 LKWLGIVDAEEQNVVVEMF--LESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKF 311

Query: 110 LDLANNSI----VGPIPQSLGHLSNLRVLQIYNNKLN-GTLSEIHFS 151
           +++  N +       + +SL    ++   Q Y++  +   ++E+   
Sbjct: 312 INMKYNYLSDEMKKELQKSLPMKIDVSDSQEYDDDYSYPMITELEHH 358

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 42.6 bits (99), Expect = 3e-04
 Identities = 21/134 (15%), Positives = 39/134 (29%), Gaps = 33/134 (24%)

Query: 508 LEMTNLKATQSLNFSHNSFTGRIPESIGA---MRSLESIDFSVNQLSGE----IPQSMSN 560
                    + L          + E       +  LE++D S   L+ E    +   +  
Sbjct: 246 FSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDK 305

Query: 561 LMSLNHLNLSNNKLTGKIPSSTQLQSFDASSFTGNDLCGAPLPKNCAENVSVSEDENGDE 620
           +  L  +N+  N L+                    D     L K+    + VS+ +  D+
Sbjct: 306 IKHLKFINMKYNYLS--------------------DEMKKELQKSLPMKIDVSDSQEYDD 345

Query: 621 DEDEVDHWLYVSIA 634
           D      + Y  I 
Sbjct: 346 D------YSYPMIT 353

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 56/360 (15%), Positives = 99/360 (27%), Gaps = 59/360 (16%)

Query: 88  LRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSE 147
           L S+     L       KNLD L+ A              L    +L             
Sbjct: 6   LLSAHNRAVLAQLGCPIKNLDALENAQAIKKKLGKLGRQVLPPSELLDHLFFHYEFQNQR 65

Query: 148 IHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYL 207
                L+ L    + G ++T         P +   +                 +  L  +
Sbjct: 66  FSAEVLSSLRQLNLAGVRMT---------PVKCTVVAAV----------LGSGRHALDEV 106

Query: 208 NLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNNMSGPLP 267
           NL +  +        L    + + L L LN     +    +  + L   +  +       
Sbjct: 107 NLASCQLDPAGLRTLLPVFLRARKLGLQLNS----LGP--EACKDLRDLLLHDQ------ 154

Query: 268 LISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGE----IPDCWMSYQ 323
                +  L LSNN  + +    L   +    S+  L L    L  E    +       +
Sbjct: 155 ---CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNR 211

Query: 324 NLEILELSNNKFTGK----LPNSLGSLTSLIWLLLGKNRLSGT-------IPVSLKNCTA 372
            L+ L ++ N         L  +     SL  L L  N LS         +  + +    
Sbjct: 212 QLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGAR 271

Query: 373 LESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNL 432
           +                   E +S ++  + R+ N       R+     L + DL D+  
Sbjct: 272 VVVSLTEGTAV--------SEYWSVILSEVQRNLNSW--DRARVQRHLELLLRDLEDSRG 321

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 20/157 (12%), Positives = 55/157 (35%), Gaps = 24/157 (15%)

Query: 3   HLEYLSLRNNKLQGTIDSEALG-----NLTSISRLDLSLN-TGPEGRIPRSMASLCNLKS 56
            L  L+L   ++   +    +         ++  ++L+     P G     +      + 
Sbjct: 73  SLRQLNLAGVRM-TPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLR-TLLPVFLRARK 130

Query: 57  INLRGVHLS----QEISEILNIFSGCVSIELESLDLRSSSISG----HLTDQLGQFKNLD 108
           + L+   L     +++ ++L     C    + +L L ++ ++      L + L    ++ 
Sbjct: 131 LGLQLNSLGPEACKDLRDLLL-HDQCQ---ITTLRLSNNPLTAAGVAVLMEGLAGNTSVT 186

Query: 109 NLDLANNSI----VGPIPQSLGHLSNLRVLQIYNNKL 141
           +L L +  +    +  +   L     L+ L +  N  
Sbjct: 187 HLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGA 223

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 43.4 bits (102), Expect = 2e-04
 Identities = 61/385 (15%), Positives = 129/385 (33%), Gaps = 76/385 (19%)

Query: 25  NLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVSI--- 81
            + S +R  +++         R      NL+S+ L+G   +   + I   + G V+    
Sbjct: 46  KIDSETREHVTMALCYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVT 105

Query: 82  -------ELESLDLRSSSIS--GHLTDQLGQFKNLDNLDLANNSIVGP--IPQSLGHLSN 130
                  +L+S+  R   +S          +  +L+ L L   S      +   + H   
Sbjct: 106 EISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRK 165

Query: 131 LRVLQIYNNKL----NGTLSEI--HFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQLVALG 184
           ++ L +  +         L E+  H ++L  L+++     K++ +          L  + 
Sbjct: 166 IKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKD---------LETIA 216

Query: 185 FHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFL-------DLGLN 237
             NC             + L  + +       L  + F K+A  L+         D+G+ 
Sbjct: 217 -RNC-------------RSLVSVKV--GDFEILELVGFFKAAANLEEFCGGSLNEDIGMP 260

Query: 238 QFHGQITDLTKVTQLLFLSVHSNNMSGPLPLISSNLVYLDLSNNSFSGSVSHYLCYRINE 297
           + +  +    K+ +L    +  N M    P  ++ +  LDL         +   C  I +
Sbjct: 261 EKYMNLVFPRKLCRLGLSYMGPNEMPILFPF-AAQIRKLDLLYALL---ETEDHCTLIQK 316

Query: 298 PKSLIGLKLK----DNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLL 353
             +L  L+ +    D  L+     C    + L+ L +        + +  G ++    + 
Sbjct: 317 CPNLEVLETRNVIGDRGLEVLAQYC----KQLKRLRIERGADEQGMEDEEGLVSQRGLIA 372

Query: 354 LGKNRLSGTIPVSLKNCTALESLDV 378
           L             + C  LE + V
Sbjct: 373 LA------------QGCQELEYMAV 385

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 42.2 bits (99), Expect = 5e-04
 Identities = 54/403 (13%), Positives = 128/403 (31%), Gaps = 47/403 (11%)

Query: 3   HLEYLSLRNNKLQ-GTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLC-NLKSINLR 60
            L+ +  R   +    +D  A      +  L L   +G       S+ + C  +K++ + 
Sbjct: 113 QLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLME 172

Query: 61  GVHLSQEISEIL-NIFSGCVSIELESLDLRSSSISGHLTDQ-----LGQFKNLDNLDLAN 114
               S++  + L  +     S  LE L+   +  +  ++ +         ++L ++ + +
Sbjct: 173 ESSFSEKDGKWLHELAQHNTS--LEVLNFYMTEFA-KISPKDLETIARNCRSLVSVKVGD 229

Query: 115 NSIVGP--IPQSLGHLSNLRVLQIYNNKLNGT--LSEIHFSNLTKLSWFRVGGNKLTLEV 170
             I+      ++  +L       +  +       ++ +    L +L    +G N++ +  
Sbjct: 230 FEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILF 289

Query: 171 RHDWIPPFQLVALGFHNCY-VGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQL 229
                   Q+  L               +    +L+ L   N  + D       +   QL
Sbjct: 290 PF----AAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNV-IGDRGLEVLAQYCKQL 344

Query: 230 KFLDL-GLNQFHGQITDLTKVTQLLFLSVHSNNMSGPLPLISSNLVYLDLSNNSFSGSVS 288
           K L +       G   +   V+Q   +++               L Y+ +  +  +    
Sbjct: 345 KRLRIERGADEQGMEDEEGLVSQRGLIALAQGC---------QELEYMAVYVSDITNESL 395

Query: 289 HYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSY---------QNLEILELSNN--KFTG 337
             +       K+L   +L     +  I D  +           + L            T 
Sbjct: 396 ESIG---TYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTD 452

Query: 338 KLPNSLGSL-TSLIWLLLGKNRLSGT-IPVSLKNCTALESLDV 378
              + +G    ++ W+LLG    S   +    + C  L+ L++
Sbjct: 453 LGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEM 495

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 2/60 (3%)

Query: 108 DNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLT 167
             L L  N     +P+ L +  +L ++ + NN+++ TLS   FSN+T+L    +  N+L 
Sbjct: 34  TELYLDGNQFTL-VPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNRLR 91

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 40.0 bits (94), Expect = 9e-04
 Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 2/83 (2%)

Query: 84  ESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNG 143
             L L  +  +  +  +L  +K+L  +DL+NN I     QS  +++ L  L +  N+L  
Sbjct: 34  TELYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR- 91

Query: 144 TLSEIHFSNLTKLSWFRVGGNKL 166
            +    F  L  L    + GN +
Sbjct: 92  CIPPRTFDGLKSLRLLSLHGNDI 114

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	677
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.98
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.96
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.96
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.96
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.96
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.95
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.95
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.95
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.95
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.95
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.94
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.93
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.93
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.93
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.93
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.93
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.93
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.93
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.93
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.92
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.92
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.91
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.9
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.9
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.89
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.89
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.89
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.88
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.88
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.88
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.88
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.88
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.87
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.86
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.86
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.86
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.86
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.86
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.85
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.85
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.84
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.83
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.81
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.81
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.8
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.8
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.8
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.8
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.8
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.78
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.77
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.77
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.75
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.75
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.75
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.73
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.73
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.73
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.72
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.72
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.72
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.71
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.7
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.7
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.7
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.7
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.69
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.68
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.67
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.66
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.65
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.64
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.64
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.61
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.6
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.6
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.6
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.6
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.6
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.58
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.57
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.55
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.55
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.5
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.48
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.48
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.45
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.44
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.4
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.39
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.37
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.34
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.32
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.3
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.23
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.15
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.14
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.11
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.09
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.7
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.61
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.47
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.41
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.3
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.24
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.02
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.95
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.49
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.28
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.26
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.65

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=4.6e-71  Score=627.36  Aligned_cols=593  Identities=32%  Similarity=0.470  Sum_probs=379.1

Q ss_pred             CCcccEEEccCCCCceecCCc--cccCCCCCCEEecCCCCCCCccCchhh-cCCCCCCEEEccCCcCCcccchh---hhh
Q 048402            1 FIHLEYLSLRNNKLQGTIDSE--ALGNLTSISRLDLSLNTGPEGRIPRSM-ASLCNLKSINLRGVHLSQEISEI---LNI   74 (677)
Q Consensus         1 ~~~L~~L~Ls~n~~~~~i~~~--~~~~l~~L~~L~Ls~~~~~~~~~~~~l-~~l~~L~~L~l~~n~l~~~~~~~---~~~   74 (677)
                      +++|++|+|++|.+.|.+ +.  .++++++|++|+++ ++.+.+..|..+ .++++|++|++++|.+++..+..   +..
T Consensus        99 l~~L~~L~Ls~n~l~~~~-~~~~~l~~l~~L~~L~Ls-~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~  176 (768)
T 3rgz_A           99 SASLTSLDLSRNSLSGPV-TTLTSLGSCSGLKFLNVS-SNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDG  176 (768)
T ss_dssp             CTTCCEEECCSSEEEEEG-GGGGGGGGCTTCCEEECC-SSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTC
T ss_pred             CCCCCEEECCCCcCCCcC-CChHHHhCCCCCCEEECc-CCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhcc
Confidence            467888999999888777 55  78888888888888 666666666655 77888888888888888777665   444


Q ss_pred             ccccCcCCccEEEcccCcCccccccccCCCCCCCEEECcCCccccCCCcCCCCCCCCCEEEccccccccccChhhhhCCC
Q 048402           75 FSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLT  154 (677)
Q Consensus        75 l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~l~~~~~~~l~  154 (677)
                      ++     +|++|++++|.+++..+  +.++++|++|++++|.+++.+|. ++++++|++|++++|.+++.+|. .+.+++
T Consensus       177 l~-----~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~-~l~~l~  247 (768)
T 3rgz_A          177 CG-----ELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSR-AISTCT  247 (768)
T ss_dssp             CT-----TCCEEECCSSEEESCCB--CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHH-HTTTCS
T ss_pred             CC-----CCCEEECCCCcccccCC--cccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccH-HHhcCC
Confidence            44     55566555555554333  24555555555555555544444 55555555555555555544443 455555


Q ss_pred             CCCEEEeeccccc----------------------eecCCCCCCC-cCccEEEeecccCCCCCChhccCCCCCCEEEccC
Q 048402          155 KLSWFRVGGNKLT----------------------LEVRHDWIPP-FQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLN  211 (677)
Q Consensus       155 ~L~~L~l~~n~l~----------------------~~~~~~~~~~-~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~  211 (677)
                      +|++|++++|.+.                      +..+..+... ++|++|++++|.+.+.+|..++.+++|++|++++
T Consensus       248 ~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~  327 (768)
T 3rgz_A          248 ELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSS  327 (768)
T ss_dssp             SCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCS
T ss_pred             CCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCC
Confidence            5555555555544                      4444444332 5555555555555555555555555555555555


Q ss_pred             CCCCCccchHHHhccCCccEEECCCccCccccCC-ccccc-cccEEEcccCCCCCCCCCC-----CCCccEEEccCCccc
Q 048402          212 SGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQITD-LTKVT-QLLFLSVHSNNMSGPLPLI-----SSNLVYLDLSNNSFS  284 (677)
Q Consensus       212 n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~~~-~L~~L~l~~n~~~~~~~~~-----~~~L~~L~l~~n~l~  284 (677)
                      |.+++..|...+..+++|++|++++|.+.+.++. +...+ +|+.|++++|.+.+..|..     +++|++|++++|.++
T Consensus       328 n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~  407 (768)
T 3rgz_A          328 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT  407 (768)
T ss_dssp             SEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEE
T ss_pred             CcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccc
Confidence            5555444444334455555555555555543332 22333 5555555555555444332     334566666666655


Q ss_pred             ccCChhHhhccCCCCCcCeEecCCCCCcccCCcccccCCCCceecccCccccccCCcCcCCCCCccEEECcCCcccccCC
Q 048402          285 GSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIP  364 (677)
Q Consensus       285 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~  364 (677)
                      +.+|..+..    +++|+.|++++|.+++..|..+..+++|++|++++|.+.+.+|..+..+++|+.|++++|++++..|
T Consensus       408 ~~~p~~l~~----l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p  483 (768)
T 3rgz_A          408 GKIPPTLSN----CSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIP  483 (768)
T ss_dssp             EECCGGGGG----CTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCC
T ss_pred             cccCHHHhc----CCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCC
Confidence            555544433    5566666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             ccCcCCCCCCEEecCCCcccccCChhhhhccCCceEEEcCCCcccccCCccccCCCCCCEEeCCCCcCCCCcCccccccc
Q 048402          365 VSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNIT  444 (677)
Q Consensus       365 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~  444 (677)
                      ..+.++++|++|++++|++.+.+|.++. .+++|++|++++|++++.+|..+..+++|+.|++++|++.|.+|..+....
T Consensus       484 ~~l~~l~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~  562 (768)
T 3rgz_A          484 SGLSNCTNLNWISLSNNRLTGEIPKWIG-RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQS  562 (768)
T ss_dssp             GGGGGCTTCCEEECCSSCCCSCCCGGGG-GCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTT
T ss_pred             HHHhcCCCCCEEEccCCccCCcCChHHh-cCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhccc
Confidence            6666666666666666666656665554 466666666666666666666666666666666666666666666555544


Q ss_pred             cCccccccCcccCccCCC-C-------------CCCcc-----cc-----cceeeEeecCCchhhhhhhccccEEEcccC
Q 048402          445 GMVAANSFTRSSQQYLPL-P-------------LDGDV-----IL-----TEKASVVSEGEAIEYDEILNLVKETDVSRN  500 (677)
Q Consensus       445 ~l~~~~~~~~~~~~~~~~-~-------------~~~~~-----~~-----~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n  500 (677)
                      .+................ .             +.+..     ..     .........+..+..+..+++|+.||+++|
T Consensus       563 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N  642 (768)
T 3rgz_A          563 GKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYN  642 (768)
T ss_dssp             TCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSS
T ss_pred             chhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCC
Confidence            443322211000000000 0             00000     00     000001112333445566889999999999


Q ss_pred             cccccCCcccCCCCCCcEEeccCCcceeecccccccCCCCcEEECCCCcccccCccccccCCCCCEEEcccCcccccCCC
Q 048402          501 NLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLSNNKLTGKIPS  580 (677)
Q Consensus       501 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~  580 (677)
                      +++|.+|..++++++|+.|+|++|+++|.+|+.++++++|++|||++|++++.+|..++.+++|++||+++|+++|.+|.
T Consensus       643 ~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~  722 (768)
T 3rgz_A          643 MLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE  722 (768)
T ss_dssp             CCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCS
T ss_pred             cccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCcCcccccCC-CCCCCCCCCCCCCCC
Q 048402          581 STQLQSFDASSFTGN-DLCGAPLPKNCAENV  610 (677)
Q Consensus       581 ~~~~~~l~~~~~~~n-~l~~~~~~~~c~~~~  610 (677)
                      ..++.++...+|.|| .+||.|+. .|....
T Consensus       723 ~~~~~~~~~~~~~gN~~Lcg~~l~-~C~~~~  752 (768)
T 3rgz_A          723 MGQFETFPPAKFLNNPGLCGYPLP-RCDPSN  752 (768)
T ss_dssp             SSSGGGSCGGGGCSCTEEESTTSC-CCCSCC
T ss_pred             chhhccCCHHHhcCCchhcCCCCc-CCCCCc
Confidence            999999999999999 89999987 886443

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=2e-65  Score=581.12  Aligned_cols=580  Identities=27%  Similarity=0.339  Sum_probs=316.5

Q ss_pred             cccEEEccCCCCcee---cCCccccCCCCCCEEecCCCCCCCccCchhhcCCCCCCEEEccCCcCCcccch--hhhhccc
Q 048402            3 HLEYLSLRNNKLQGT---IDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEISE--ILNIFSG   77 (677)
Q Consensus         3 ~L~~L~Ls~n~~~~~---i~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~--~~~~l~~   77 (677)
                      +++.|+|+++.+.|.   + +.++.++++|+.++++ .+... .+|..++++++|++|+|++|.+++.+|.  .++.++ 
T Consensus        51 ~v~~L~L~~~~l~g~~~~l-~~~l~~L~~L~~l~~~-~~~~~-~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~-  126 (768)
T 3rgz_A           51 KVTSIDLSSKPLNVGFSAV-SSSLLSLTGLESLFLS-NSHIN-GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCS-  126 (768)
T ss_dssp             EEEEEECTTSCCCEEHHHH-HHHTTTCTTCCEEECT-TSCEE-ECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCT-
T ss_pred             cEEEEECCCCCcCCccCcc-ChhHhccCcccccCCc-CCCcC-CCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCC-
Confidence            466777777777766   5 4455556666666555 32221 2334555666666666666666555555  555555 


Q ss_pred             cCcCCccEEEcccCcCcccccccc-CCCCCCCEEECcCCccccCCCcC---CCCCCCCCEEEccccccccccChhhhhCC
Q 048402           78 CVSIELESLDLRSSSISGHLTDQL-GQFKNLDNLDLANNSIVGPIPQS---LGHLSNLRVLQIYNNKLNGTLSEIHFSNL  153 (677)
Q Consensus        78 ~~~~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~---~~~l~~L~~L~L~~n~i~~~l~~~~~~~l  153 (677)
                          +|++|++++|.+++..|..+ .++++|++|++++|.+++..|..   +.++++|++|++++|.+.+..+   +.++
T Consensus       127 ----~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~l  199 (768)
T 3rgz_A          127 ----GLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD---VSRC  199 (768)
T ss_dssp             ----TCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB---CTTC
T ss_pred             ----CCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC---cccC
Confidence                56666666665555544443 55555666666666555544444   4555555555555555553332   2455


Q ss_pred             CCCCEEEeeccccceecCCCCCCCcCccEEEeecccCCCCCChhccCCCCCCEEEccCCCCCCccchHHHhccCCccEEE
Q 048402          154 TKLSWFRVGGNKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLD  233 (677)
Q Consensus       154 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~  233 (677)
                      ++|++|++++|.+.+..+. +..+++|++|++++|.+.+.+|..+..+++|++|++++|.+++..|..   .+++|++|+
T Consensus       200 ~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~---~l~~L~~L~  275 (768)
T 3rgz_A          200 VNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL---PLKSLQYLS  275 (768)
T ss_dssp             TTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC---CCTTCCEEE
T ss_pred             CcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc---ccCCCCEEE
Confidence            5555555555555544443 555555555555555555555555555555555555555554443332   344555555


Q ss_pred             CCCccCccccCCc-ccc-ccccEEEcccCCCCCCCCCC---CCCccEEEccCCcccccCChhHhhccCCCCCcCeEecCC
Q 048402          234 LGLNQFHGQITDL-TKV-TQLLFLSVHSNNMSGPLPLI---SSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKD  308 (677)
Q Consensus       234 Ls~n~l~~~~~~~-~~~-~~L~~L~l~~n~~~~~~~~~---~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~  308 (677)
                      +++|.+.+.++.. ... ++|+.|++++|.+++..|..   +++|++|++++|.+++.+|...   +..+++|++|++++
T Consensus       276 L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~---l~~l~~L~~L~Ls~  352 (768)
T 3rgz_A          276 LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDT---LLKMRGLKVLDLSF  352 (768)
T ss_dssp             CCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHH---HTTCTTCCEEECCS
T ss_pred             CcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHH---HhcCCCCCEEeCcC
Confidence            5555554333322 222 45555555555544444332   3444555555555444443321   12244444444444


Q ss_pred             CCCcccCCcccccCC-CCceecccCccccccCCcCcCC--CCCccEEECcCCcccccCCccCcCCCCCCEEecCCCcccc
Q 048402          309 NSLQGEIPDCWMSYQ-NLEILELSNNKFTGKLPNSLGS--LTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVG  385 (677)
Q Consensus       309 n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~--l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~  385 (677)
                      |.+.+.+|..+..++ +|++|++++|.+++..|..+..  +++|++|++++|++++..|..+..+++|++|++++|.+.+
T Consensus       353 n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  432 (768)
T 3rgz_A          353 NEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG  432 (768)
T ss_dssp             SEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEES
T ss_pred             CccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccC
Confidence            444444444444443 4444444444444444443333  3444444444444444444444444444444444444444


Q ss_pred             cCChhhhhccCCceEEEcCCCcccccCCccccCCCCCCEEeCCCCcCCCCcCccccccccCccccccCcccCccCCCCCC
Q 048402          386 NIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLD  465 (677)
Q Consensus       386 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~  465 (677)
                      .+|..+. .+++|++|++++|.+.+.+|..+..+++|++|++++|++.+.+|..+.++++|+.++...+...+..|..+.
T Consensus       433 ~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~  511 (768)
T 3rgz_A          433 TIPSSLG-SLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG  511 (768)
T ss_dssp             CCCGGGG-GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG
T ss_pred             cccHHHh-cCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHh
Confidence            4443332 344444444444444444444444444444444444444444444444444444444443333333222221


Q ss_pred             Ccccccceee--EeecCCchhhhhhhccccEEEcccCccc----------------------------------------
Q 048402          466 GDVILTEKAS--VVSEGEAIEYDEILNLVKETDVSRNNLT----------------------------------------  503 (677)
Q Consensus       466 ~~~~~~~~~~--~~~~~~~~~~~~~l~~L~~L~Ls~n~l~----------------------------------------  503 (677)
                      ....+.....  ....+..+..+..+++|+.|++++|+++                                        
T Consensus       512 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  591 (768)
T 3rgz_A          512 RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAG  591 (768)
T ss_dssp             GCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSE
T ss_pred             cCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccc
Confidence            1111000000  0001122233344455555555555554                                        


Q ss_pred             ------------------------------ccCCcccCCCCCCcEEeccCCcceeecccccccCCCCcEEECCCCccccc
Q 048402          504 ------------------------------KSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGE  553 (677)
Q Consensus       504 ------------------------------~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  553 (677)
                                                    |.+|..++.+++|+.|+|++|+++|.+|..++++++|+.|+|++|++++.
T Consensus       592 ~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~  671 (768)
T 3rgz_A          592 NLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGS  671 (768)
T ss_dssp             EEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSC
T ss_pred             cccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCC
Confidence                                          44455566678999999999999999999999999999999999999999


Q ss_pred             CccccccCCCCCEEEcccCcccccCCCC-CCCCCcCcccccCCCCCCCC
Q 048402          554 IPQSMSNLMSLNHLNLSNNKLTGKIPSS-TQLQSFDASSFTGNDLCGAP  601 (677)
Q Consensus       554 ~p~~l~~l~~L~~L~ls~N~l~~~~p~~-~~~~~l~~~~~~~n~l~~~~  601 (677)
                      +|+.++++++|++||+++|+++|.+|.. ..+..+..+++++|.+.|..
T Consensus       672 ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~i  720 (768)
T 3rgz_A          672 IPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPI  720 (768)
T ss_dssp             CCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEEC
T ss_pred             CChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccC
Confidence            9999999999999999999999999975 66778889999999887753

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=2.1e-57  Score=511.32  Aligned_cols=569  Identities=20%  Similarity=0.210  Sum_probs=304.7

Q ss_pred             CcccEEEccCCCCceecCCccccCCCCCCEEecCCCCCCCccCchhhcCCCCCCEEEccCCcCCcccchhhhhccccCcC
Q 048402            2 IHLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVSI   81 (677)
Q Consensus         2 ~~L~~L~Ls~n~~~~~i~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~   81 (677)
                      +++++|+|++|.++ .+++..|.++++|++|+++ ++.+.+..|.+++++++|++|++++|.+++..+..|+.++     
T Consensus        25 ~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls-~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~-----   97 (680)
T 1ziw_A           25 TNITVLNLTHNQLR-RLPAANFTRYSQLTSLDVG-FNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCT-----   97 (680)
T ss_dssp             TTCSEEECCSSCCC-CCCGGGGGGGTTCSEEECC-SSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCT-----
T ss_pred             CCCcEEECCCCCCC-CcCHHHHhCCCcCcEEECC-CCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCC-----
Confidence            46778888888777 4546667778888888887 6667777777777888888888888877766666677777     


Q ss_pred             CccEEEcccCcCccccccccCCCCCCCEEECcCCccccCCCcCCCCCCCCCEEEccccccccccChhhhh--CCCCCCEE
Q 048402           82 ELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFS--NLTKLSWF  159 (677)
Q Consensus        82 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~l~~~~~~--~l~~L~~L  159 (677)
                      +|++|++++|.+++..|..|+++++|++|++++|.+++..|..+.++++|++|++++|.++ .++...+.  .+++|+.|
T Consensus        98 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~~~~~~L~~L  176 (680)
T 1ziw_A           98 NLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQ-ALKSEELDIFANSSLKKL  176 (680)
T ss_dssp             TCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCC-CBCHHHHGGGTTCEESEE
T ss_pred             CCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCccc-ccCHHHhhccccccccEE
Confidence            7888888888777666677778888888888888777777777777888888888888776 34433443  45778888


Q ss_pred             EeeccccceecCCCCCCCcCccEEEeecccCCCCCChhcc---CCCCCCEEEccCCCCCCccchHHHhcc--CCccEEEC
Q 048402          160 RVGGNKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLH---SQKHLQYLNLLNSGMSDLFPIRFLKSA--FQLKFLDL  234 (677)
Q Consensus       160 ~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~---~l~~L~~L~l~~n~i~~~~~~~~~~~~--~~L~~L~L  234 (677)
                      ++++|.+++..+..+..+.+|+.+++.++.+.......+.   ..++|++|++++|.+++..+..+.. +  ++|++|++
T Consensus       177 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~-l~~~~L~~L~L  255 (680)
T 1ziw_A          177 ELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLG-LKWTNLTMLDL  255 (680)
T ss_dssp             ECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGG-GGGSCCCEEEC
T ss_pred             ECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhc-cCcCCCCEEEC
Confidence            8888877776666665555554444444333211111000   1244555555555555544433322 2  22555555


Q ss_pred             CCccCccccCC-ccccccccEEEcccCCCCCCCCCC---CCCccEEEccCCcccccC-----ChhHhhccCCCCCcCeEe
Q 048402          235 GLNQFHGQITD-LTKVTQLLFLSVHSNNMSGPLPLI---SSNLVYLDLSNNSFSGSV-----SHYLCYRINEPKSLIGLK  305 (677)
Q Consensus       235 s~n~l~~~~~~-~~~~~~L~~L~l~~n~~~~~~~~~---~~~L~~L~l~~n~l~~~~-----~~~~~~~~~~~~~L~~L~  305 (677)
                      ++|.+.+..+. +..+++|+.|++++|.+.+..+..   +++|+.|++++|...+.+     |..-...+..+++|++|+
T Consensus       256 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~  335 (680)
T 1ziw_A          256 SYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLN  335 (680)
T ss_dssp             TTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEE
T ss_pred             CCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEE
Confidence            55555544432 333455555555555555444332   345555555554333211     111111233455555555


Q ss_pred             cCCCCCcccCCcccccCCCCceecccCcccc--ccCCcCcCCC--CCccEEECcCCcccccCCccCcCCCCCCEEecCCC
Q 048402          306 LKDNSLQGEIPDCWMSYQNLEILELSNNKFT--GKLPNSLGSL--TSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGEN  381 (677)
Q Consensus       306 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l--~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n  381 (677)
                      +++|.+.+..+..|.++++|++|++++|.+.  ......|..+  ++|+.|++++|++++..|.+|..+++|++|++++|
T Consensus       336 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N  415 (680)
T 1ziw_A          336 MEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLN  415 (680)
T ss_dssp             CCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCC
Confidence            5555555555555555555555555555432  1112222222  34555555555555555555555555555555555


Q ss_pred             cccccCChhhhhccCCceEEEcCCCcccccCCccccCCCCCCEEeCCCCcCC--CCcCccccccccCccccccCcccCcc
Q 048402          382 EFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLF--GTIPKCINNITGMVAANSFTRSSQQY  459 (677)
Q Consensus       382 ~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~--~~~p~~~~~l~~l~~~~~~~~~~~~~  459 (677)
                      .+.+.+|...+..+++|++|++++|++.+..+..+..+++|+.|++++|.+.  +.+|..+.++++|+.++...+.....
T Consensus       416 ~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i  495 (680)
T 1ziw_A          416 EIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANI  495 (680)
T ss_dssp             CCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCC
T ss_pred             cCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcC
Confidence            5555555444445555555555555555555555555555555555555553  34455555555555555444433222


Q ss_pred             CCCCCCCccccccee----------eEeecCCchhhhhhhccccEEEcccCcccccCCcccCCCCCCcEEeccCCcceee
Q 048402          460 LPLPLDGDVILTEKA----------SVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGR  529 (677)
Q Consensus       460 ~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~  529 (677)
                      .+..+.....+....          .....+.....+..+++|+.|++++|+++...+..|.++++|++|++++|++++.
T Consensus       496 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l  575 (680)
T 1ziw_A          496 NDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTL  575 (680)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred             ChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcC
Confidence            111111000000000          0000000011233344555555555555533333455555555555555555543


Q ss_pred             cccccccCCCCcEEECCCCcccccCccccc-cCCCCCEEEcccCcccccCC
Q 048402          530 IPESIGAMRSLESIDFSVNQLSGEIPQSMS-NLMSLNHLNLSNNKLTGKIP  579 (677)
Q Consensus       530 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~ls~N~l~~~~p  579 (677)
                      .+..|.++++|+.|++++|++++..|..+. .+++|+.+++++|++.|.++
T Consensus       576 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~  626 (680)
T 1ziw_A          576 PASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE  626 (680)
T ss_dssp             CTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred             CHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence            334445555555555555555544444444 44555555555555555544

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=4e-56  Score=500.81  Aligned_cols=521  Identities=20%  Similarity=0.224  Sum_probs=423.3

Q ss_pred             CCcccEEEccCCCCceecCCccccCCCCCCEEecCCCCCCCccCchhhcCCCCCCEEEccCCcCCcccchhhhhccccCc
Q 048402            1 FIHLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVS   80 (677)
Q Consensus         1 ~~~L~~L~Ls~n~~~~~i~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~   80 (677)
                      +++|++|+|++|.++ .+++.+|.++++|++|+++ ++.+.+..+.+|+++++|++|++++|.+++..+..++.++    
T Consensus        48 l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~-~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~----  121 (680)
T 1ziw_A           48 YSQLTSLDVGFNTIS-KLEPELCQKLPMLKVLNLQ-HNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQK----  121 (680)
T ss_dssp             GTTCSEEECCSSCCC-CCCTTHHHHCTTCCEEECC-SSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCT----
T ss_pred             CCcCcEEECCCCccC-ccCHHHHhcccCcCEEECC-CCccCccChhhhccCCCCCEEECCCCccCccChhHccccC----
Confidence            478999999999998 4448889999999999999 7777766556799999999999999999988888899999    


Q ss_pred             CCccEEEcccCcCccccccccCCCCCCCEEECcCCccccCCCcCCC--CCCCCCEEEccccccccccChhhhhCC-----
Q 048402           81 IELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLG--HLSNLRVLQIYNNKLNGTLSEIHFSNL-----  153 (677)
Q Consensus        81 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~i~~~l~~~~~~~l-----  153 (677)
                       +|++|++++|.+++..+..+.++++|++|++++|.+++..+..+.  .+++|++|++++|.+++..+. .+..+     
T Consensus       122 -~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~  199 (680)
T 1ziw_A          122 -NLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPG-CFHAIGRLFG  199 (680)
T ss_dssp             -TCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTT-GGGGSSEECE
T ss_pred             -CCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChh-hhhhhhhhhh
Confidence             999999999999988899999999999999999999877666554  568999999999999854443 55544     


Q ss_pred             ----------------------CCCCEEEeeccccceecCCCCCCCcC--ccEEEeecccCCCCCChhccCCCCCCEEEc
Q 048402          154 ----------------------TKLSWFRVGGNKLTLEVRHDWIPPFQ--LVALGFHNCYVGSRFPQWLHSQKHLQYLNL  209 (677)
Q Consensus       154 ----------------------~~L~~L~l~~n~l~~~~~~~~~~~~~--L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l  209 (677)
                                            ++|+.|++++|.+.+..+..+..+..  |+.|++++|.+.+..|.+++.+++|++|++
T Consensus       200 L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  279 (680)
T 1ziw_A          200 LFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFL  279 (680)
T ss_dssp             EECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred             hhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeC
Confidence                                  56777888888888887777877654  999999999988888888889999999999


Q ss_pred             cCCCCCCccchHHHhccCCccEEECCCccCccc-----cC-----CccccccccEEEcccCCCCCCCCCC---CCCccEE
Q 048402          210 LNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQ-----IT-----DLTKVTQLLFLSVHSNNMSGPLPLI---SSNLVYL  276 (677)
Q Consensus       210 ~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~-----~~-----~~~~~~~L~~L~l~~n~~~~~~~~~---~~~L~~L  276 (677)
                      ++|.+++..+..+ ..+++|++|++++|...+.     ++     .+..+++|+.|++++|.+.+..+..   +++|++|
T Consensus       280 ~~n~l~~~~~~~~-~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  358 (680)
T 1ziw_A          280 EYNNIQHLFSHSL-HGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYL  358 (680)
T ss_dssp             CSCCBSEECTTTT-TTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEE
T ss_pred             CCCccCccChhhh-cCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEE
Confidence            9998888766555 5578899999987755432     11     3455688999999999988876643   6788999


Q ss_pred             EccCCcccccCC--hhHhhccCCCCCcCeEecCCCCCcccCCcccccCCCCceecccCccccccCC-cCcCCCCCccEEE
Q 048402          277 DLSNNSFSGSVS--HYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLP-NSLGSLTSLIWLL  353 (677)
Q Consensus       277 ~l~~n~l~~~~~--~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~  353 (677)
                      ++++|.+.....  ..+.. + ..++|+.|++++|.+.+..|.+|..+++|++|++++|.+.+.+| ..|.++++|+.|+
T Consensus       359 ~Ls~n~~~~~~l~~~~f~~-~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~  436 (680)
T 1ziw_A          359 SLSNSFTSLRTLTNETFVS-L-AHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIY  436 (680)
T ss_dssp             ECTTCBSCCCEECTTTTGG-G-TTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEE
T ss_pred             ECCCCchhhhhcchhhhcc-c-ccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEe
Confidence            999887543221  11111 1 13678999999999988888889999999999999999887665 6788899999999


Q ss_pred             CcCCcccccCCccCcCCCCCCEEecCCCccc--ccCChhhhhccCCceEEEcCCCcccccCCccccCCCCCCEEeCCCCc
Q 048402          354 LGKNRLSGTIPVSLKNCTALESLDVGENEFV--GNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNN  431 (677)
Q Consensus       354 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~  431 (677)
                      +++|++++..+..|..+++|+.|++++|.+.  +.+|..+. .+++|++|++++|++++..+..+.++++|++|++++|+
T Consensus       437 Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~-~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~  515 (680)
T 1ziw_A          437 LSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQ-PLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNN  515 (680)
T ss_dssp             CCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             cCCCCcceeChhhhhcCcccccchhccccccccccCCcccc-cCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCC
Confidence            9999998888888999999999999999876  45666554 78899999999999998777888899999999999998


Q ss_pred             CCCCcC--------ccccccccCccccccCcccCccCCCCCCCcccccceeeEeecCCchhhhhhhccccEEEcccCccc
Q 048402          432 LFGTIP--------KCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLT  503 (677)
Q Consensus       432 l~~~~p--------~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~  503 (677)
                      +++..+        ..+.++++|+.++...+......                      ...+..+++|+.|++++|+++
T Consensus       516 l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~----------------------~~~~~~l~~L~~L~Ls~N~l~  573 (680)
T 1ziw_A          516 LARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIP----------------------VEVFKDLFELKIIDLGLNNLN  573 (680)
T ss_dssp             CGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCC----------------------TTTTTTCTTCCEEECCSSCCC
T ss_pred             ccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCC----------------------HHHcccccCcceeECCCCCCC
Confidence            875322        23677777877776665443221                      223456889999999999999


Q ss_pred             ccCCcccCCCCCCcEEeccCCcceeecccccc-cCCCCcEEECCCCcccccCc
Q 048402          504 KSIPLEMTNLKATQSLNFSHNSFTGRIPESIG-AMRSLESIDFSVNQLSGEIP  555 (677)
Q Consensus       504 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p  555 (677)
                      +..+..|.++++|+.|++++|++++..|..+. .+++|+.|++++|.+...-+
T Consensus       574 ~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~  626 (680)
T 1ziw_A          574 TLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE  626 (680)
T ss_dssp             CCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred             cCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence            88888899999999999999999988888887 79999999999999986543

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=1.5e-55  Score=489.45  Aligned_cols=519  Identities=21%  Similarity=0.175  Sum_probs=389.4

Q ss_pred             CcccEEEccCCCCceecCCccccCCCCCCEEecCCCCCCCccCchhhcCCCCCCEEEccCCcCCcccchhhhhccccCcC
Q 048402            2 IHLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVSI   81 (677)
Q Consensus         2 ~~L~~L~Ls~n~~~~~i~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~   81 (677)
                      +++++|+|++|.++ .+++.+|.++++|++|+++ ++.+.+..|.+|.++++|++|++++|.+++..|..++.++     
T Consensus        33 ~~l~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls-~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-----  105 (606)
T 3t6q_A           33 NSTECLEFSFNVLP-TIQNTTFSRLINLTFLDLT-RCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPK-----  105 (606)
T ss_dssp             TTCCEEECTTCCCS-EECTTTSTTCTTCSEEECT-TCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCT-----
T ss_pred             CcCcEEEccCCccC-cCChhHhccCccceEEECC-CCccceeChhhccCccccCeeeCCCCcccccChhhhcccc-----
Confidence            35677777777777 4446677777777777777 6666666677777777777777777777777777777777     


Q ss_pred             CccEEEcccCcCccccccccCCCCCCCEEECcCCccccCCCcCCCCCCCCCEEEccccccccccChhhhhCCCCCC--EE
Q 048402           82 ELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLS--WF  159 (677)
Q Consensus        82 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~l~~~~~~~l~~L~--~L  159 (677)
                      +|++|++++|.+++..+..+.++++|++|++++|.+++..+..+..+++|++|++++|.++ .++...++.+++|+  .|
T Consensus       106 ~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~l~L  184 (606)
T 3t6q_A          106 ALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIH-YLSKEDMSSLQQATNLSL  184 (606)
T ss_dssp             TCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCC-EECHHHHHTTTTCCSEEE
T ss_pred             cccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCccc-ccChhhhhhhcccceeEE
Confidence            7777777777777666667777777777777777777544444555777777777777776 44444677777777  77


Q ss_pred             EeeccccceecCCCCCCCcCccEEEeecccCCCCCChhccCCCCCCEEEccCCCCC-----CccchHHHhccC--CccEE
Q 048402          160 RVGGNKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMS-----DLFPIRFLKSAF--QLKFL  232 (677)
Q Consensus       160 ~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~-----~~~~~~~~~~~~--~L~~L  232 (677)
                      ++++|.+.+..+..+.. ..++.+++++|.   ..+..+..+.+++...+....+.     ...+. .+..+.  +++.+
T Consensus       185 ~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~---~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~-~~~~l~~~~L~~L  259 (606)
T 3t6q_A          185 NLNGNDIAGIEPGAFDS-AVFQSLNFGGTQ---NLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPA-VFEGLCEMSVESI  259 (606)
T ss_dssp             ECTTCCCCEECTTTTTT-CEEEEEECTTCS---CHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGG-GGGGGGGSEEEEE
T ss_pred             ecCCCccCccChhHhhh-ccccccccCCch---hHHHHhhhccccchhheechhhccccccccChh-HhchhhcCceeEE
Confidence            77777777766655544 467777777664   23344444444433333222211     11111 112222  68888


Q ss_pred             ECCCccCccccCC-ccccccccEEEcccCCCCCCCCC--CCCCccEEEccCCcccccCChhHhhccCCCCCcCeEecCCC
Q 048402          233 DLGLNQFHGQITD-LTKVTQLLFLSVHSNNMSGPLPL--ISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDN  309 (677)
Q Consensus       233 ~Ls~n~l~~~~~~-~~~~~~L~~L~l~~n~~~~~~~~--~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n  309 (677)
                      ++++|.+.+..+. +..+++|+.|++++|.++...+.  .+++|++|++++|.+.+..+..+.    .+++|++|++++|
T Consensus       260 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~----~l~~L~~L~l~~n  335 (606)
T 3t6q_A          260 NLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISAS----NFPSLTHLSIKGN  335 (606)
T ss_dssp             ECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGG----GCTTCSEEECCSC
T ss_pred             EeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhh----ccCcCCEEECCCC
Confidence            8888888877665 55568888888888888743332  257888899998888866555443    3788999999998


Q ss_pred             CCcccCCc-ccccCCCCceecccCccccccC--CcCcCCCCCccEEECcCCcccccCCccCcCCCCCCEEecCCCccccc
Q 048402          310 SLQGEIPD-CWMSYQNLEILELSNNKFTGKL--PNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGN  386 (677)
Q Consensus       310 ~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~  386 (677)
                      .+.+.++. .+..+++|++|++++|.+.+..  +..+..+++|+.|++++|++.+..|..|..+++|++|++++|++.+.
T Consensus       336 ~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  415 (606)
T 3t6q_A          336 TKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVK  415 (606)
T ss_dssp             SSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECC
T ss_pred             CcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCc
Confidence            88765544 4888889999999998888665  67788888999999999988888888888889999999999988866


Q ss_pred             CChhhhhccCCceEEEcCCCcccccCCccccCCCCCCEEeCCCCcCCCCcCccccccccCccccccCcccCccCCCCCCC
Q 048402          387 IPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDG  466 (677)
Q Consensus       387 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~  466 (677)
                      .+...+..+++|++|++++|.+.+..|..+..+++|++|++++|++.+..+..                           
T Consensus       416 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---------------------------  468 (606)
T 3t6q_A          416 DAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQK---------------------------  468 (606)
T ss_dssp             TTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECS---------------------------
T ss_pred             ccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCcccccc---------------------------
Confidence            66554557888999999999888888888888889999999998886421100                           


Q ss_pred             cccccceeeEeecCCchhhhhhhccccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeecccccccCCCCcEEECC
Q 048402          467 DVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFS  546 (677)
Q Consensus       467 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls  546 (677)
                                      ...+..+++|+.|++++|++++..|..|.++++|++|++++|++++..|+.+.++++| .|+++
T Consensus       469 ----------------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~  531 (606)
T 3t6q_A          469 ----------------TNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLA  531 (606)
T ss_dssp             ----------------SCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECC
T ss_pred             ----------------chhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECc
Confidence                            1122345667999999999999999999999999999999999999999999999999 99999


Q ss_pred             CCcccccCccccccCCCCCEEEcccCcccccCCCC
Q 048402          547 VNQLSGEIPQSMSNLMSLNHLNLSNNKLTGKIPSS  581 (677)
Q Consensus       547 ~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~  581 (677)
                      +|++++..|+.+..+++|++|++++|++.|.++..
T Consensus       532 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~  566 (606)
T 3t6q_A          532 SNHISIILPSLLPILSQQRTINLRQNPLDCTCSNI  566 (606)
T ss_dssp             SSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGGH
T ss_pred             CCcccccCHhhcccCCCCCEEeCCCCCccccCCcH
Confidence            99999988999999999999999999999988753

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=1e-54  Score=482.87  Aligned_cols=507  Identities=18%  Similarity=0.138  Sum_probs=326.9

Q ss_pred             EEEccCCCCceecCCccccCCCCCCEEecCCCCCCCccCchhhcCCCCCCEEEccCCcCCcccchhhhhccccCcCCccE
Q 048402            6 YLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVSIELES   85 (677)
Q Consensus         6 ~L~Ls~n~~~~~i~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~L~~   85 (677)
                      +++.+++.++ .+ |..+.  ++|++|+++ ++.+.+..+.+|.++++|++|++++|.+++..|..|..++     +|++
T Consensus        15 ~~~c~~~~l~-~i-p~~~~--~~l~~L~Ls-~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~-----~L~~   84 (606)
T 3vq2_A           15 TYQCMDQKLS-KV-PDDIP--SSTKNIDLS-FNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLH-----HLSN   84 (606)
T ss_dssp             EEECTTSCCS-SC-CTTSC--TTCCEEECT-TSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCT-----TCCE
T ss_pred             ceEccCCCcc-cC-CCCCC--CCcCEEECC-CCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchh-----hcCE
Confidence            4455555554 44 22221  455555555 4444444444555555555555555555555555555555     5555


Q ss_pred             EEcccCcCccccccccCCCCCCCEEECcCCccccCCCcCCCCCCCCCEEEcccccccc-ccChhhhhCCCCCCEEEeecc
Q 048402           86 LDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNG-TLSEIHFSNLTKLSWFRVGGN  164 (677)
Q Consensus        86 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~-~l~~~~~~~l~~L~~L~l~~n  164 (677)
                      |++++|.+++..|..|+++++|++|++++|.+++..+..++++++|++|++++|.+.+ .+|. .++++++|++|++++|
T Consensus        85 L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~-~~~~l~~L~~L~Ls~n  163 (606)
T 3vq2_A           85 LILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPA-YFSNLTNLVHVDLSYN  163 (606)
T ss_dssp             EECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCG-GGGTCTTCCEEECCSS
T ss_pred             eECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechH-hHhhcCCCCEEEccCC
Confidence            5555555555445555555555555555555554444555555555555555555542 2343 4555555555555555


Q ss_pred             ccceecCCCCCCCcCcc----EEEeecccCCCCCChhccCCCCCCEEEccCCCCCCccchHHHhccCCcc----------
Q 048402          165 KLTLEVRHDWIPPFQLV----ALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLK----------  230 (677)
Q Consensus       165 ~l~~~~~~~~~~~~~L~----~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~----------  230 (677)
                      .+++..+..+..+.+++    .+++++|.+.+..+..+... +|++|++++|.+++......+..++.++          
T Consensus       164 ~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~  242 (606)
T 3vq2_A          164 YIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFK  242 (606)
T ss_dssp             CCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCT
T ss_pred             cceecChhhhhhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccc
Confidence            55555444444444332    45555555554444333333 4555555555544322222223344444          


Q ss_pred             ----------------------EEEC-CCccCccccCCccccccccEEEcccCCCCCCCCC-CCCCccEEEccCCccccc
Q 048402          231 ----------------------FLDL-GLNQFHGQITDLTKVTQLLFLSVHSNNMSGPLPL-ISSNLVYLDLSNNSFSGS  286 (677)
Q Consensus       231 ----------------------~L~L-s~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~L~~L~l~~n~l~~~  286 (677)
                                            .+++ ..+.+.+..+.+..+++|+.+++++|.+...... .+++|++|++++|.+ +.
T Consensus       243 ~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l-~~  321 (606)
T 3vq2_A          243 DERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQL-KQ  321 (606)
T ss_dssp             TSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCC-SS
T ss_pred             cCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccC-cc
Confidence                                  4444 5566666666666667788888887777554311 156777888888877 44


Q ss_pred             CChhHhhccCCCCCcCeEecCCCCCcccCCcccccCCCCceecccCcccccc--CCcCcCCCCCccEEECcCCcccccCC
Q 048402          287 VSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGK--LPNSLGSLTSLIWLLLGKNRLSGTIP  364 (677)
Q Consensus       287 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~l~~n~~~~~~~  364 (677)
                      +|..      .+++|++|++++|...+..  .+..+++|++|++++|.+++.  .+..+..+++|+.|++++|.+++ .|
T Consensus       322 lp~~------~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~  392 (606)
T 3vq2_A          322 FPTL------DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MS  392 (606)
T ss_dssp             CCCC------CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-EC
T ss_pred             cccC------CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-ch
Confidence            4421      3677888888877544333  456777888888888877754  36667777788888888887774 44


Q ss_pred             ccCcCCCCCCEEecCCCcccccCChhhhhccCCceEEEcCCCcccccCCccccCCCCCCEEeCCCCcCCCC-cCcccccc
Q 048402          365 VSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGT-IPKCINNI  443 (677)
Q Consensus       365 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~p~~~~~l  443 (677)
                      ..+..+++|++|++++|++.+..|...+..+++|++|++++|.+++..|..+..+++|++|++++|++.+. +|..+..+
T Consensus       393 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l  472 (606)
T 3vq2_A          393 ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANT  472 (606)
T ss_dssp             CCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTC
T ss_pred             hhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccC
Confidence            67777788888888888777655533444677888888888887777777777778888888888877653 45555544


Q ss_pred             ccCccccccCcccCccCCCCCCCcccccceeeEeecCCchhhhhhhccccEEEcccCcccccCCcccCCCCCCcEEeccC
Q 048402          444 TGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSH  523 (677)
Q Consensus       444 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~  523 (677)
                                                                    ++|++|++++|++++..|..+.++++|++|++++
T Consensus       473 ----------------------------------------------~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~  506 (606)
T 3vq2_A          473 ----------------------------------------------TNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSH  506 (606)
T ss_dssp             ----------------------------------------------TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             ----------------------------------------------CCCCEEECCCCcCCccChhhhcccccCCEEECCC
Confidence                                                          4459999999999998899999999999999999


Q ss_pred             CcceeecccccccCCCCcEEECCCCcccccCccccccCC-CCCEEEcccCcccccCCCC
Q 048402          524 NSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLM-SLNHLNLSNNKLTGKIPSS  581 (677)
Q Consensus       524 n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~ls~N~l~~~~p~~  581 (677)
                      |++++..|..|.++++|++|++++|+++ .+|..+..++ +|++|++++|++.|.++..
T Consensus       507 N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~~  564 (606)
T 3vq2_A          507 NNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEHQ  564 (606)
T ss_dssp             SCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTTH
T ss_pred             CcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCccH
Confidence            9999888999999999999999999998 6777788887 5999999999999988764

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=4.9e-55  Score=500.98  Aligned_cols=554  Identities=19%  Similarity=0.151  Sum_probs=383.5

Q ss_pred             EEEccCCCCceecCCccccCCCCCCEEecCCCCCCCccCchhhcCCCCCCEEEccCCcCCccc-chhhhhccccCcCCcc
Q 048402            6 YLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEI-SEILNIFSGCVSIELE   84 (677)
Q Consensus         6 ~L~Ls~n~~~~~i~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~~~~~~L~   84 (677)
                      ..+.++++++ .+ |.   -.++|++|+|+ ++.+.+..|..|.++++|++|++++|...+.+ |..|..++     +|+
T Consensus         8 ~~dcs~~~L~-~v-P~---lp~~l~~LdLs-~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~-----~L~   76 (844)
T 3j0a_A            8 IAFYRFCNLT-QV-PQ---VLNTTERLLLS-FNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLP-----NLR   76 (844)
T ss_dssp             EEEESCCCSS-CC-CS---SCTTCCEEEEE-SCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCT-----TCC
T ss_pred             EEEccCCCCC-CC-CC---CCCCcCEEECC-CCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCC-----CCC
Confidence            5666777776 55 33   34677788887 66677666777777778888888777554444 66677777     778


Q ss_pred             EEEcccCcCccccccccCCCCCCCEEECcCCccccCCCcC--CCCCCCCCEEEccccccccccChhhhhCCCCCCEEEee
Q 048402           85 SLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQS--LGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVG  162 (677)
Q Consensus        85 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~L~~n~i~~~l~~~~~~~l~~L~~L~l~  162 (677)
                      +|+|++|.+++..|..|.++++|++|++++|.+++..|..  +.++++|++|++++|.+++..+...|+++++|+.|+++
T Consensus        77 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls  156 (844)
T 3j0a_A           77 ILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFS  156 (844)
T ss_dssp             EEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEE
T ss_pred             EEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECC
Confidence            8888877777777777777778888888877777655544  77777888888887777644443467777788888888


Q ss_pred             ccccceecCCCCCCC--cCccEEEeecccCCCCCChhccCCCC------CCEEEccCCCCCCccchHHHhcc--CCccEE
Q 048402          163 GNKLTLEVRHDWIPP--FQLVALGFHNCYVGSRFPQWLHSQKH------LQYLNLLNSGMSDLFPIRFLKSA--FQLKFL  232 (677)
Q Consensus       163 ~n~l~~~~~~~~~~~--~~L~~L~l~~n~~~~~~~~~~~~l~~------L~~L~l~~n~i~~~~~~~~~~~~--~~L~~L  232 (677)
                      +|.+++..+..+..+  ++|+.|++++|.+.+..|..+..+++      |++|++++|.+++..+..+....  .+++.+
T Consensus       157 ~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L  236 (844)
T 3j0a_A          157 SNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSL  236 (844)
T ss_dssp             SSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEE
T ss_pred             CCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccce
Confidence            777777666666655  67777778777777766666655554      77888888777666555554322  356667


Q ss_pred             ECCCccCc---------ccc-CCccc--cccccEEEcccCCCCCCCCCC---CCCccEEEccCCcccccCChhHhhccCC
Q 048402          233 DLGLNQFH---------GQI-TDLTK--VTQLLFLSVHSNNMSGPLPLI---SSNLVYLDLSNNSFSGSVSHYLCYRINE  297 (677)
Q Consensus       233 ~Ls~n~l~---------~~~-~~~~~--~~~L~~L~l~~n~~~~~~~~~---~~~L~~L~l~~n~l~~~~~~~~~~~~~~  297 (677)
                      .++.+...         ... ..+..  .++++.|++++|.+.+..+..   +++|+.|++++|.+++..+..+    ..
T Consensus       237 ~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~----~~  312 (844)
T 3j0a_A          237 ILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAF----YG  312 (844)
T ss_dssp             ECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTT----TT
T ss_pred             ecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHh----cC
Confidence            66533221         111 11112  257788888888777665543   5677888888888876665543    34


Q ss_pred             CCCcCeEecCCCCCcccCCcccccCCCCceecccCccccccCCcCcCCCCCccEEECcCCcccccCCccCcCCCCCCEEe
Q 048402          298 PKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLD  377 (677)
Q Consensus       298 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~  377 (677)
                      +++|++|++++|.+.+..+..|.++++|+.|++++|.+.+..+..|..+++|+.|++++|.+++.     ..+++|+.|+
T Consensus       313 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~  387 (844)
T 3j0a_A          313 LDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIF  387 (844)
T ss_dssp             CSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEE
T ss_pred             CCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhc
Confidence            77888888888888777777788888888888888888776677777888888888888877632     2367788888


Q ss_pred             cCCCcccccCChhhhhccCCceEEEcCCCcccccC-CccccCCCCCCEEeCCCCcCCCCcCc-cccccccCccccccCcc
Q 048402          378 VGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPL-PTRLCDLAFLQILDLADNNLFGTIPK-CINNITGMVAANSFTRS  455 (677)
Q Consensus       378 l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~p~-~~~~l~~l~~~~~~~~~  455 (677)
                      +++|++. .+|..    ...++.|++++|++.+.. +..+..+++|+.|++++|++++..+. .+..+++|+.++...+.
T Consensus       388 l~~N~l~-~l~~~----~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~  462 (844)
T 3j0a_A          388 LSGNKLV-TLPKI----NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENM  462 (844)
T ss_dssp             EESCCCC-CCCCC----CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCC
T ss_pred             cCCCCcc-ccccc----ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCc
Confidence            8888776 55543    456777888888777532 22345777888888888877654332 34445566555554443


Q ss_pred             cCccCCCCCCCcccccceeeEeecCCchhhhhhhccccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeecccccc
Q 048402          456 SQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIG  535 (677)
Q Consensus       456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~  535 (677)
                      .....+                 .+.....+..+++|+.|+|++|++++.+|..|.++++|++|+|++|++++..|..+.
T Consensus       463 l~~~~~-----------------~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~  525 (844)
T 3j0a_A          463 LQLAWE-----------------TELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP  525 (844)
T ss_dssp             CSSSCC-----------------SCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC
T ss_pred             cccccc-----------------cccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh
Confidence            321111                 011123345578889999999999998888899999999999999999977666666


Q ss_pred             cCCCCcEEECCCCcccccCccccccCCCCCEEEcccCcccccCCCCCCCCCcCcccccCCCCCCCCCCCCCCCC
Q 048402          536 AMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLSNNKLTGKIPSSTQLQSFDASSFTGNDLCGAPLPKNCAEN  609 (677)
Q Consensus       536 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n~l~~~~~~~~c~~~  609 (677)
                        ++|+.|++++|++++..|+.|   .+|+.+++++|++.|.|+......++.   -....++|.|....|..+
T Consensus       526 --~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C~c~~~~f~~~~~---~~~~~~~~~~~~~~C~~p  591 (844)
T 3j0a_A          526 --ANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFICECELSTFINWLN---HTNVTIAGPPADIYCVYP  591 (844)
T ss_dssp             --SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECCCCSSSCCSHHHHHH---HTTTTTCCCGGGCCCSSC
T ss_pred             --ccccEEECCCCcCCCCChhHh---CCcCEEEecCCCcccccccHHHHHHHH---hcCcccccccccCccCCc
Confidence              899999999999998888776   478899999999999887543222211   111256666666677544

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=2.7e-53  Score=471.47  Aligned_cols=529  Identities=17%  Similarity=0.168  Sum_probs=413.9

Q ss_pred             cEEEccCCCCceecCCccccCCCCCCEEecCCCCCCCccCchhhcCCCCCCEEEccCCcCCcccchhhhhccccCcCCcc
Q 048402            5 EYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVSIELE   84 (677)
Q Consensus         5 ~~L~Ls~n~~~~~i~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~L~   84 (677)
                      ++++.++..++ .+ |..+.  +++++|+++ ++.+++..|.+|.++++|++|++++|.+++..|..|..++     +|+
T Consensus        15 ~~~~c~~~~l~-~i-P~~l~--~~l~~L~Ls-~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~-----~L~   84 (606)
T 3t6q_A           15 KTYNCENLGLN-EI-PGTLP--NSTECLEFS-FNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQH-----RLD   84 (606)
T ss_dssp             TEEECTTSCCS-SC-CTTSC--TTCCEEECT-TCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCT-----TCC
T ss_pred             ceEECCCCCcc-cC-cCCCC--CcCcEEEcc-CCccCcCChhHhccCccceEEECCCCccceeChhhccCcc-----ccC
Confidence            46777777777 66 54443  478899998 7777777788888889999999998888888888888888     899


Q ss_pred             EEEcccCcCccccccccCCCCCCCEEECcCCccccCCCcCCCCCCCCCEEEccccccccccChhhhhCCCCCCEEEeecc
Q 048402           85 SLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGN  164 (677)
Q Consensus        85 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~l~~~~~~~l~~L~~L~l~~n  164 (677)
                      +|++++|.+++..|..|+++++|++|++++|.+++..+..++++++|++|++++|.+.+ ++...+..+++|+.|++++|
T Consensus        85 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n  163 (606)
T 3t6q_A           85 TLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISS-IKLPKGFPTEKLKVLDFQNN  163 (606)
T ss_dssp             EEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCC-CCCCTTCCCTTCCEEECCSS
T ss_pred             eeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccc-cCcccccCCcccCEEEcccC
Confidence            99999998888888888888999999999998887667888888899999999888873 32224556888889998888


Q ss_pred             ccceecCCCCCCCcCcc--EEEeecccCCCCCChhccCCCCCCEEEccCCCCCCccchHHHhccCCccEEECCCccCcc-
Q 048402          165 KLTLEVRHDWIPPFQLV--ALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHG-  241 (677)
Q Consensus       165 ~l~~~~~~~~~~~~~L~--~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~-  241 (677)
                      .+++..+..+..+.+++  .|++++|.+.+..|..+.. .+|++|++++|..   .+. .+..+..+....+....+.. 
T Consensus       164 ~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~~---~~~-~~~~l~~~~l~~l~~~~~~~~  238 (606)
T 3t6q_A          164 AIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQN---LLV-IFKGLKNSTIQSLWLGTFEDM  238 (606)
T ss_dssp             CCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCSC---HHH-HHHHTTTCEEEEEECCCCTTS
T ss_pred             cccccChhhhhhhcccceeEEecCCCccCccChhHhhh-ccccccccCCchh---HHH-Hhhhccccchhheechhhccc
Confidence            88877777777788887  7888888888777766554 5788888888752   122 22333433333322221111 


Q ss_pred             ----ccC-Ccccc--ccccEEEcccCCCCCCCCCC---CCCccEEEccCCcccccCChhHhhccCCCCCcCeEecCCCCC
Q 048402          242 ----QIT-DLTKV--TQLLFLSVHSNNMSGPLPLI---SSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSL  311 (677)
Q Consensus       242 ----~~~-~~~~~--~~L~~L~l~~n~~~~~~~~~---~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l  311 (677)
                          ..+ .+...  .+++.+++++|.+.+..+..   +++|++|++++|.++. +|.    .+..+++|++|++++|.+
T Consensus       239 ~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-lp~----~l~~l~~L~~L~l~~n~l  313 (606)
T 3t6q_A          239 DDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSE-LPS----GLVGLSTLKKLVLSANKF  313 (606)
T ss_dssp             CCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSC-CCS----SCCSCTTCCEEECTTCCC
T ss_pred             cccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCC-CCh----hhcccccCCEEECccCCc
Confidence                001 11111  37889999999988876653   6789999999998873 343    345588999999999999


Q ss_pred             cccCCcccccCCCCceecccCccccccCCc-CcCCCCCccEEECcCCcccccC--CccCcCCCCCCEEecCCCcccccCC
Q 048402          312 QGEIPDCWMSYQNLEILELSNNKFTGKLPN-SLGSLTSLIWLLLGKNRLSGTI--PVSLKNCTALESLDVGENEFVGNIP  388 (677)
Q Consensus       312 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~l~~n~~~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~  388 (677)
                      .+..|..+..+++|++|++++|.+.+.++. .+..+++|+.|++++|++++..  +..+..+++|++|++++|++.+..|
T Consensus       314 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  393 (606)
T 3t6q_A          314 ENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKT  393 (606)
T ss_dssp             SBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECT
T ss_pred             CcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCH
Confidence            888788889999999999999988865554 4888999999999999988765  6778899999999999999886656


Q ss_pred             hhhhhccCCceEEEcCCCcccccCCc-cccCCCCCCEEeCCCCcCCCCcCccccccccCccccccCcccCccCCCCCCCc
Q 048402          389 TWTGERFSRMVVLILRSNNFHGPLPT-RLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGD  467 (677)
Q Consensus       389 ~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~  467 (677)
                      ..+. .+++|++|++++|.+.+..+. .+..+++|++|++++|.+.+..|..+..+++                      
T Consensus       394 ~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~----------------------  450 (606)
T 3t6q_A          394 EAFK-ECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPA----------------------  450 (606)
T ss_dssp             TTTT-TCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTT----------------------
T ss_pred             HHhc-CCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCC----------------------
Confidence            5544 788999999999999876554 4888999999999999988777766655444                      


Q ss_pred             ccccceeeEeecCCchhhhhhhccccEEEcccCccccc---CCcccCCCCCCcEEeccCCcceeecccccccCCCCcEEE
Q 048402          468 VILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKS---IPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESID  544 (677)
Q Consensus       468 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~---~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  544 (677)
                                              |++|++++|++++.   .+..+..+++|++|++++|++++..|..|+++++|++|+
T Consensus       451 ------------------------L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  506 (606)
T 3t6q_A          451 ------------------------LQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVD  506 (606)
T ss_dssp             ------------------------CCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             ------------------------CCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEE
Confidence                                    59999999999873   336799999999999999999988899999999999999


Q ss_pred             CCCCcccccCccccccCCCCCEEEcccCcccccCCCC-CCCCCcCcccccCCCCCCCCCCCCCC
Q 048402          545 FSVNQLSGEIPQSMSNLMSLNHLNLSNNKLTGKIPSS-TQLQSFDASSFTGNDLCGAPLPKNCA  607 (677)
Q Consensus       545 Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~-~~~~~l~~~~~~~n~l~~~~~~~~c~  607 (677)
                      +++|++++..|+.+..++.| +|++++|++++..|.. ..+..++.+++.+     +|+.|+|.
T Consensus       507 Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~-----N~~~c~c~  564 (606)
T 3t6q_A          507 LSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQ-----NPLDCTCS  564 (606)
T ss_dssp             CCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTT-----CCEECSGG
T ss_pred             CCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCC-----CCccccCC
Confidence            99999999999999999999 9999999999877763 3445566666655     56667774

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=2.3e-52  Score=463.88  Aligned_cols=486  Identities=18%  Similarity=0.156  Sum_probs=421.9

Q ss_pred             CcccEEEccCCCCceecCCccccCCCCCCEEecCCCCCCCccCchhhcCCCCCCEEEccCCcCCcccchhhhhccccCcC
Q 048402            2 IHLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVSI   81 (677)
Q Consensus         2 ~~L~~L~Ls~n~~~~~i~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~   81 (677)
                      +++++|+|++|.++ .+++..|.++++|++|+++ ++.+.+..|.+|.++++|++|++++|.+++..|..++.++     
T Consensus        32 ~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls-~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~-----  104 (606)
T 3vq2_A           32 SSTKNIDLSFNPLK-ILKSYSFSNFSELQWLDLS-RCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLT-----  104 (606)
T ss_dssp             TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECT-TCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCT-----
T ss_pred             CCcCEEECCCCCcC-EeChhhccCCccCcEEeCC-CCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcc-----
Confidence            57999999999998 5557799999999999999 7788888888999999999999999999999899999999     


Q ss_pred             CccEEEcccCcCccccccccCCCCCCCEEECcCCcccc-CCCcCCCCCCCCCEEEccccccccccChhhhhCCCCCC---
Q 048402           82 ELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVG-PIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLS---  157 (677)
Q Consensus        82 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~i~~~l~~~~~~~l~~L~---  157 (677)
                      +|++|++++|.+++..+..++++++|++|++++|.+++ .+|..++++++|++|++++|.+++..+. .++.+.+|+   
T Consensus       105 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~~l  183 (606)
T 3vq2_A          105 SLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVN-DLQFLRENPQVN  183 (606)
T ss_dssp             TCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTT-TTHHHHHCTTCC
T ss_pred             cCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChh-hhhhhhcccccc
Confidence            99999999999998887889999999999999999986 5699999999999999999999854443 676666554   


Q ss_pred             -EEEeeccccceecCCCCCCCcCccEEEeecccCC-CCCChhccCCCCCCEEEc--------------------------
Q 048402          158 -WFRVGGNKLTLEVRHDWIPPFQLVALGFHNCYVG-SRFPQWLHSQKHLQYLNL--------------------------  209 (677)
Q Consensus       158 -~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~l--------------------------  209 (677)
                       .+++++|.++...+..+... +|+.|++++|.+. ...|.++.++++++.+++                          
T Consensus       184 ~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~  262 (606)
T 3vq2_A          184 LSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVT  262 (606)
T ss_dssp             CEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSE
T ss_pred             ceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhcc
Confidence             89999999998877777666 8999999999876 456677777887777666                          


Q ss_pred             -------cCCCCCCccchHHHhccCCccEEECCCccCccccCCccccccccEEEcccCCCCCCCCC-CCCCccEEEccCC
Q 048402          210 -------LNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNNMSGPLPL-ISSNLVYLDLSNN  281 (677)
Q Consensus       210 -------~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~L~~L~l~~n  281 (677)
                             ..+.+.+..+.  +..+++|+.|++++|.+.... .+..+++|+.|++++|.+. .+|. .+++|++|++++|
T Consensus       263 l~~l~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l~-~lp~~~l~~L~~L~l~~n  338 (606)
T 3vq2_A          263 IDEFRLTYTNDFSDDIVK--FHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQLK-QFPTLDLPFLKSLTLTMN  338 (606)
T ss_dssp             EEEEEECCCTTCCGGGGS--CGGGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCCS-SCCCCCCSSCCEEEEESC
T ss_pred             Hhheeccccccccccccc--cccCCCCCEEEecCccchhhh-hccccccCCEEEcccccCc-ccccCCCCccceeeccCC
Confidence                   44555555554  466789999999999997544 7777899999999999994 4443 5889999999999


Q ss_pred             cccccCChhHhhccCCCCCcCeEecCCCCCccc--CCcccccCCCCceecccCccccccCCcCcCCCCCccEEECcCCcc
Q 048402          282 SFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGE--IPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRL  359 (677)
Q Consensus       282 ~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~  359 (677)
                      ...+..      .+..+++|++|++++|.+++.  .+..+..+++|++|++++|.+++ .|..+..+++|+.|++++|++
T Consensus       339 ~~~~~~------~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l  411 (606)
T 3vq2_A          339 KGSISF------KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTL  411 (606)
T ss_dssp             SSCEEC------CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEE
T ss_pred             cCccch------hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCcc
Confidence            665443      345689999999999999866  48889999999999999999985 668899999999999999999


Q ss_pred             cccCC-ccCcCCCCCCEEecCCCcccccCChhhhhccCCceEEEcCCCcccc-cCCccccCCCCCCEEeCCCCcCCCCcC
Q 048402          360 SGTIP-VSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHG-PLPTRLCDLAFLQILDLADNNLFGTIP  437 (677)
Q Consensus       360 ~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~p  437 (677)
                      .+..+ ..+..+++|++|++++|.+.+..|..+. .+++|++|++++|.+++ .+|..+..+++|++|++++|++++..|
T Consensus       412 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~  490 (606)
T 3vq2_A          412 KRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFL-GLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISW  490 (606)
T ss_dssp             ESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTT-TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT
T ss_pred             CCccChhhhhccccCCEEECcCCCCCccchhhhc-CCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccCh
Confidence            98877 6899999999999999999977777665 79999999999999997 478899999999999999999998777


Q ss_pred             ccccccccCccccccCcccCccCCCCCCCcccccceeeEeecCCchhhhhhhccccEEEcccCcccccCCcccCCCCCCc
Q 048402          438 KCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQ  517 (677)
Q Consensus       438 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~  517 (677)
                      ..+.++++|                                              ++|++++|++++..|..+.++++|+
T Consensus       491 ~~~~~l~~L----------------------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~  524 (606)
T 3vq2_A          491 GVFDTLHRL----------------------------------------------QLLNMSHNNLLFLDSSHYNQLYSLS  524 (606)
T ss_dssp             TTTTTCTTC----------------------------------------------CEEECCSSCCSCEEGGGTTTCTTCC
T ss_pred             hhhcccccC----------------------------------------------CEEECCCCcCCCcCHHHccCCCcCC
Confidence            776665554                                              9999999999999999999999999


Q ss_pred             EEeccCCcceeecccccccCC-CCcEEECCCCcccccCc
Q 048402          518 SLNFSHNSFTGRIPESIGAMR-SLESIDFSVNQLSGEIP  555 (677)
Q Consensus       518 ~L~Ls~n~l~~~~p~~~~~l~-~L~~L~Ls~N~l~~~~p  555 (677)
                      +|++++|+++ .+|..+..++ +|++|++++|.+....+
T Consensus       525 ~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~  562 (606)
T 3vq2_A          525 TLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICE  562 (606)
T ss_dssp             EEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred             EEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence            9999999999 6787799997 69999999999985443

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=1.5e-50  Score=463.93  Aligned_cols=523  Identities=18%  Similarity=0.179  Sum_probs=428.5

Q ss_pred             CEEecCCCCCCCccCchhhcCCCCCCEEEccCCcCCcccchhhhhccccCcCCccEEEcccCcCcccc-ccccCCCCCCC
Q 048402           30 SRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHL-TDQLGQFKNLD  108 (677)
Q Consensus        30 ~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~-~~~~~~l~~L~  108 (677)
                      +..+.+ ++.++ .+|.   -.++|++|+|++|.+++..+..+..++     +|++|++++|...+.+ |.+|.++++|+
T Consensus         7 ~~~dcs-~~~L~-~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~-----~L~~LdLs~n~~~~~i~~~~f~~L~~L~   76 (844)
T 3j0a_A            7 RIAFYR-FCNLT-QVPQ---VLNTTERLLLSFNYIRTVTASSFPFLE-----QLQLLELGSQYTPLTIDKEAFRNLPNLR   76 (844)
T ss_dssp             EEEEES-CCCSS-CCCS---SCTTCCEEEEESCCCCEECSSSCSSCC-----SCSEEEECTTCCCCEECTTTTSSCTTCC
T ss_pred             eEEEcc-CCCCC-CCCC---CCCCcCEEECCCCcCCccChhHCcccc-----cCeEEeCCCCCCccccCHHHhcCCCCCC
Confidence            356676 55555 4554   457899999999999999899999999     9999999999665554 88999999999


Q ss_pred             EEECcCCccccCCCcCCCCCCCCCEEEccccccccccCh-hhhhCCCCCCEEEeeccccceecC-CCCCCCcCccEEEee
Q 048402          109 NLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSE-IHFSNLTKLSWFRVGGNKLTLEVR-HDWIPPFQLVALGFH  186 (677)
Q Consensus       109 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~l~~-~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~l~  186 (677)
                      +|+|++|.+++..|.+|.++++|++|++++|.+++.++. ..|.++++|++|++++|.+++..+ ..|..+++|++|+++
T Consensus        77 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls  156 (844)
T 3j0a_A           77 ILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFS  156 (844)
T ss_dssp             EEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEE
T ss_pred             EEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECC
Confidence            999999999988899999999999999999999865554 348999999999999999988765 478999999999999


Q ss_pred             cccCCCCCChhccCC--CCCCEEEccCCCCCCccchHHHhccC------CccEEECCCccCccccCCcc----ccccccE
Q 048402          187 NCYVGSRFPQWLHSQ--KHLQYLNLLNSGMSDLFPIRFLKSAF------QLKFLDLGLNQFHGQITDLT----KVTQLLF  254 (677)
Q Consensus       187 ~n~~~~~~~~~~~~l--~~L~~L~l~~n~i~~~~~~~~~~~~~------~L~~L~Ls~n~l~~~~~~~~----~~~~L~~  254 (677)
                      +|.+.+..+..+..+  ++|+.|++++|.+.+..+..+. .++      .|+.|++++|.+.+..+...    ...+++.
T Consensus       157 ~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~-~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~  235 (844)
T 3j0a_A          157 SNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWG-KCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFS  235 (844)
T ss_dssp             SSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCC-SSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSE
T ss_pred             CCcCCeeCHHHcccccCCccceEECCCCccccccccchh-hcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccc
Confidence            999999999998877  8999999999999886655432 122      49999999998876554332    2367888


Q ss_pred             EEcccCCCC---------CCCCC-----CCCCccEEEccCCcccccCChhHhhccCCCCCcCeEecCCCCCcccCCcccc
Q 048402          255 LSVHSNNMS---------GPLPL-----ISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWM  320 (677)
Q Consensus       255 L~l~~n~~~---------~~~~~-----~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~  320 (677)
                      +.+..+...         +....     ..++|+.|++++|.+.+..+..    +..+++|+.|++++|.+.+..+..|.
T Consensus       236 L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~L~~n~i~~~~~~~~~  311 (844)
T 3j0a_A          236 LILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRV----FETLKDLKVLNLAYNKINKIADEAFY  311 (844)
T ss_dssp             EECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCC----SSSCCCCCEEEEESCCCCEECTTTTT
T ss_pred             eecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhh----hhcCCCCCEEECCCCcCCCCChHHhc
Confidence            887743322         11111     1368999999999998776654    44589999999999999999999999


Q ss_pred             cCCCCceecccCccccccCCcCcCCCCCccEEECcCCcccccCCccCcCCCCCCEEecCCCcccccCChhhhhccCCceE
Q 048402          321 SYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVV  400 (677)
Q Consensus       321 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~  400 (677)
                      ++++|++|++++|.+++..+..|..+++|+.|++++|++.+..+..|.++++|++|++++|.+. .++     .+++|+.
T Consensus       312 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~i~-----~~~~L~~  385 (844)
T 3j0a_A          312 GLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT-TIH-----FIPSIPD  385 (844)
T ss_dssp             TCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSC-CCS-----SCCSCSE
T ss_pred             CCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCC-ccc-----CCCCcch
Confidence            9999999999999999888999999999999999999999888889999999999999999997 444     2789999


Q ss_pred             EEcCCCcccccCCccccCCCCCCEEeCCCCcCCCCcC-ccccccccCccccccCcccCccCCCCCCCcccccceeeEeec
Q 048402          401 LILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIP-KCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSE  479 (677)
Q Consensus       401 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  479 (677)
                      |++++|+++ .+|..   ..+++.+++++|++.+.-. ..+.++++|+.++...+......+..                
T Consensus       386 L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~----------------  445 (844)
T 3j0a_A          386 IFLSGNKLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQ----------------  445 (844)
T ss_dssp             EEEESCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSS----------------
T ss_pred             hccCCCCcc-ccccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCccccccccc----------------
Confidence            999999998 44543   5689999999999986422 24557788877776666543221110                


Q ss_pred             CCchhhhhhhccccEEEcccCccc-----ccCCcccCCCCCCcEEeccCCcceeecccccccCCCCcEEECCCCcccccC
Q 048402          480 GEAIEYDEILNLVKETDVSRNNLT-----KSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEI  554 (677)
Q Consensus       480 ~~~~~~~~~l~~L~~L~Ls~n~l~-----~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~  554 (677)
                           .+..+++|+.|++++|.++     +..+..|.++++|++|+|++|++++..|..|.++++|++|+|++|++++..
T Consensus       446 -----~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~  520 (844)
T 3j0a_A          446 -----TPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLS  520 (844)
T ss_dssp             -----SSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCC
T ss_pred             -----ccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccC
Confidence                 1123678999999999997     445567899999999999999999888899999999999999999999777


Q ss_pred             ccccccCCCCCEEEcccCcccccCCCCCCCCCcCcccccCCCCCCCCCCCCCC
Q 048402          555 PQSMSNLMSLNHLNLSNNKLTGKIPSSTQLQSFDASSFTGNDLCGAPLPKNCA  607 (677)
Q Consensus       555 p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n~l~~~~~~~~c~  607 (677)
                      |..+.  ++|+.||+++|++++.+|..  +..+..+++.+|     |+.|+|.
T Consensus       521 ~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L~~l~l~~N-----p~~C~c~  564 (844)
T 3j0a_A          521 HNDLP--ANLEILDISRNQLLAPNPDV--FVSLSVLDITHN-----KFICECE  564 (844)
T ss_dssp             CCCCC--SCCCEEEEEEECCCCCCSCC--CSSCCEEEEEEE-----CCCCSSS
T ss_pred             hhhhh--ccccEEECCCCcCCCCChhH--hCCcCEEEecCC-----Ccccccc
Confidence            77666  89999999999999998874  556666666654     6666664

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=8.8e-49  Score=432.27  Aligned_cols=509  Identities=19%  Similarity=0.183  Sum_probs=380.7

Q ss_pred             cEEEccCCCCceecCCccccCCCCCCEEecCCCCCCCccCchhhcCCCCCCEEEccCCcCCcccchhhhhccccCcCCcc
Q 048402            5 EYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVSIELE   84 (677)
Q Consensus         5 ~~L~Ls~n~~~~~i~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~L~   84 (677)
                      ++++-++.+++ .+ |..+  .+++++|+++ ++.+++..+.+|.++++|++|++++|.+++..+..|..++     +|+
T Consensus        10 ~~~~c~~~~l~-~i-p~~l--~~~l~~L~Ls-~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~-----~L~   79 (570)
T 2z63_A           10 ITYQCMELNFY-KI-PDNL--PFSTKNLDLS-FNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLS-----HLS   79 (570)
T ss_dssp             TEEECCSSCCS-SC-CSSS--CSSCCEEECC-SCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCT-----TCC
T ss_pred             cEEEeCCCCcc-cc-CCCc--cccccEEEcc-CCccCccChhHhhCCCCceEEECCCCcCCccCcccccCch-----hCC
Confidence            45666666666 56 4333  2578888888 6677766677788888888888888888877777787777     888


Q ss_pred             EEEcccCcCccccccccCCCCCCCEEECcCCccccCCCcCCCCCCCCCEEEcccccccc-ccChhhhhCCCCCCEEEeec
Q 048402           85 SLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNG-TLSEIHFSNLTKLSWFRVGG  163 (677)
Q Consensus        85 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~-~l~~~~~~~l~~L~~L~l~~  163 (677)
                      +|++++|.+++..|..|.++++|++|++++|.++...+..++++++|++|++++|.+.+ .+|. .|.++++|+.|++++
T Consensus        80 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~-~~~~l~~L~~L~l~~  158 (570)
T 2z63_A           80 TLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE-YFSNLTNLEHLDLSS  158 (570)
T ss_dssp             EEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCG-GGGGCTTCCEEECTT
T ss_pred             EEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChh-hhcccCCCCEEeCcC
Confidence            88888888887777788888888888888888876555568888888888888888764 3565 688888888888888


Q ss_pred             cccceecCCCCCCCcCc----cEEEeecccCCCCCChhccCCCCCCEEEccCCCCCCccchHHHhccCCccEEECCCccC
Q 048402          164 NKLTLEVRHDWIPPFQL----VALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQF  239 (677)
Q Consensus       164 n~l~~~~~~~~~~~~~L----~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l  239 (677)
                      |.++...+..+..+.+|    +.+++++|.+.+..|..+... +|++|++++|.............++.++...+....+
T Consensus       159 n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~  237 (570)
T 2z63_A          159 NKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEF  237 (570)
T ss_dssp             SCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEEC
T ss_pred             CccceecHHHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccc
Confidence            88887777777777777    788888888877777777655 7888888887544332233344556666555433222


Q ss_pred             cc------ccC-Ccccc--ccccEEEcccC-CCCCCCCCC---CCCccEEEccCCcccccCChhHhhccCCCCCcCeEec
Q 048402          240 HG------QIT-DLTKV--TQLLFLSVHSN-NMSGPLPLI---SSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKL  306 (677)
Q Consensus       240 ~~------~~~-~~~~~--~~L~~L~l~~n-~~~~~~~~~---~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l  306 (677)
                      ..      ... .+..+  -.++.+++.++ .+.+..+..   +++|++|++++|.+.+ +|..    +..+ +|++|++
T Consensus       238 ~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-l~~~----~~~~-~L~~L~l  311 (570)
T 2z63_A          238 RNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKDF----SYNF-GWQHLEL  311 (570)
T ss_dssp             CCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECS-CCBC----CSCC-CCSEEEE
T ss_pred             cCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchh-hhhh----hccC-CccEEee
Confidence            11      100 11111  24566666666 444544443   5778888888888764 3332    3335 8888888


Q ss_pred             CCCCCcccCCcccccCCCCceecccCccccccCCcCcCCCCCccEEECcCCcccccC--CccCcCCCCCCEEecCCCccc
Q 048402          307 KDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTI--PVSLKNCTALESLDVGENEFV  384 (677)
Q Consensus       307 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~--~~~~~~l~~L~~L~l~~n~l~  384 (677)
                      ++|.+. .+|.  ..+++|+.|++++|.+.+..+.  ..+++|+.|++++|++++..  +..+.++++|++|++++|.+.
T Consensus       312 ~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~  386 (570)
T 2z63_A          312 VNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI  386 (570)
T ss_dssp             ESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEE
T ss_pred             ccCccc-ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccc
Confidence            888887 4554  4778888888888887765554  67888888888888887554  566778888888888888887


Q ss_pred             ccCChhhhhccCCceEEEcCCCcccccCC-ccccCCCCCCEEeCCCCcCCCCcCccccccccCccccccCcccCccCCCC
Q 048402          385 GNIPTWTGERFSRMVVLILRSNNFHGPLP-TRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLP  463 (677)
Q Consensus       385 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~  463 (677)
                      + ++.. +..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..|..+..++                   
T Consensus       387 ~-~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-------------------  445 (570)
T 2z63_A          387 T-MSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS-------------------  445 (570)
T ss_dssp             E-EEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCT-------------------
T ss_pred             c-cccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCC-------------------
Confidence            4 4433 3368888888888888886655 4678888888888888888766666555544                   


Q ss_pred             CCCcccccceeeEeecCCchhhhhhhccccEEEcccCccc-ccCCcccCCCCCCcEEeccCCcceeecccccccCCCCcE
Q 048402          464 LDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLT-KSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLES  542 (677)
Q Consensus       464 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  542 (677)
                                                 +|++|++++|.++ +.+|..+..+++|++|++++|++++..|..|.++++|++
T Consensus       446 ---------------------------~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  498 (570)
T 2z63_A          446 ---------------------------SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV  498 (570)
T ss_dssp             ---------------------------TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred             ---------------------------cCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCE
Confidence                                       4599999999998 578899999999999999999999888999999999999


Q ss_pred             EECCCCcccccCccccccCCCCCEEEcccCcccccCCCCCCC
Q 048402          543 IDFSVNQLSGEIPQSMSNLMSLNHLNLSNNKLTGKIPSSTQL  584 (677)
Q Consensus       543 L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~  584 (677)
                      |++++|++++..|..|..+++|+.|++++|++.|.+|....+
T Consensus       499 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~  540 (570)
T 2z63_A          499 LNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL  540 (570)
T ss_dssp             EECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHH
T ss_pred             EeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchHHH
Confidence            999999999888888999999999999999999999875443

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=1e-48  Score=429.44  Aligned_cols=492  Identities=18%  Similarity=0.212  Sum_probs=365.0

Q ss_pred             CcccEEEccCCCCceecCCccccCCCCCCEEecCCCCCCCccCchhhcCCCCCCEEEccCCcCCcccchhhhhccccCcC
Q 048402            2 IHLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVSI   81 (677)
Q Consensus         2 ~~L~~L~Ls~n~~~~~i~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~   81 (677)
                      +.....+.+++.++ .+ |..+  .++|++|+++ ++.+.+..|.+|.++++|++|++++|.+++..|..+..++     
T Consensus         5 ~~~~~c~~~~~~l~-~i-p~~~--~~~L~~L~Ls-~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~-----   74 (549)
T 2z81_A            5 DASGVCDGRSRSFT-SI-PSGL--TAAMKSLDLS-FNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLG-----   74 (549)
T ss_dssp             CTTSEEECTTSCCS-SC-CSCC--CTTCCEEECC-SSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCT-----
T ss_pred             CCCceEECCCCccc-cc-cccC--CCCccEEECc-CCccCccChhhhhcCCcccEEECCCCCcCccChhhccccc-----
Confidence            34455788888888 77 4444  3789999999 7778877788899999999999999999988888888888     


Q ss_pred             CccEEEcccCcCccccccccCCCCCCCEEECcCCccccC-CCcCCCCCCCCCEEEccccccccccChhhhhCCCCCCEEE
Q 048402           82 ELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGP-IPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFR  160 (677)
Q Consensus        82 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~i~~~l~~~~~~~l~~L~~L~  160 (677)
                      +|++|++++|.+++..+..|+++++|++|++++|.+++. .|..++++++|++|++++|.+.+.++...|.++++|++|+
T Consensus        75 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~  154 (549)
T 2z81_A           75 SLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELE  154 (549)
T ss_dssp             TCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEE
T ss_pred             cCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeee
Confidence            899999999999988887899999999999999998863 5678899999999999999855577766788999999999


Q ss_pred             eeccccceecCCCCCCCcCccEEEeecccCCCCCChhccCCCCCCEEEccCCCCCCcc--chHHHhccCCccEEECCCcc
Q 048402          161 VGGNKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLF--PIRFLKSAFQLKFLDLGLNQ  238 (677)
Q Consensus       161 l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~--~~~~~~~~~~L~~L~Ls~n~  238 (677)
                      +++|.+++..+..+..+++|+.|++++|.+.......+..+++|++|++++|.+++..  +..+...+++|+.|++++|.
T Consensus       155 L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~  234 (549)
T 2z81_A          155 IKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSV  234 (549)
T ss_dssp             EEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCE
T ss_pred             ccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccc
Confidence            9999988888888888888888888887765433333356777888888888776642  22222345667777777776


Q ss_pred             CccccC-----CccccccccEEEcccCCCCCCCCCCCCCccEEEccCCcccccCChhHhhccCCCCCcCeEecCCCCCcc
Q 048402          239 FHGQIT-----DLTKVTQLLFLSVHSNNMSGPLPLISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQG  313 (677)
Q Consensus       239 l~~~~~-----~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~  313 (677)
                      +.+..+     .....++++.+++++|.+.+....                   +......+..+++++.|++.++.+..
T Consensus       235 l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~-------------------~~~~~~~~~~l~~L~~L~l~~~~i~~  295 (549)
T 2z81_A          235 LTDESFNELLKLLRYILELSEVEFDDCTLNGLGDF-------------------NPSESDVVSELGKVETVTIRRLHIPQ  295 (549)
T ss_dssp             EEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCC-------------------CCCTTTCCCCCTTCCEEEEESCBCSC
T ss_pred             cchhHHHHHHHHhhhhccccccccccccccccccc-------------------cccchhhhhhhcccccccccccccch
Confidence            654321     112234555555555544332110                   00001122335566666666665432


Q ss_pred             c-----CCcccccCCCCceecccCccccccCCcCc-CCCCCccEEECcCCcccccCC---ccCcCCCCCCEEecCCCccc
Q 048402          314 E-----IPDCWMSYQNLEILELSNNKFTGKLPNSL-GSLTSLIWLLLGKNRLSGTIP---VSLKNCTALESLDVGENEFV  384 (677)
Q Consensus       314 ~-----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~---~~~~~l~~L~~L~l~~n~l~  384 (677)
                      .     .+..+...++|+.|++++|.+. .+|..+ ..+++|+.|++++|++++..|   ..+..+++|++|++++|++.
T Consensus       296 ~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~  374 (549)
T 2z81_A          296 FYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR  374 (549)
T ss_dssp             GGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCC
T ss_pred             hhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCccc
Confidence            1     1222344567888888888877 556555 467888888888888876553   33677888888888888886


Q ss_pred             ccCCh--hhhhccCCceEEEcCCCcccccCCccccCCCCCCEEeCCCCcCCCCcCccccccccCccccccCcccCccCCC
Q 048402          385 GNIPT--WTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPL  462 (677)
Q Consensus       385 ~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~  462 (677)
                      + ++.  ..+..+++|++|++++|+++ .+|..+..+++|++|++++|++.+ +|..+                      
T Consensus       375 ~-~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~----------------------  429 (549)
T 2z81_A          375 S-MQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-VKTCI----------------------  429 (549)
T ss_dssp             C-HHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSC-CCTTS----------------------
T ss_pred             c-cccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCccc-ccchh----------------------
Confidence            3 332  23446888899999998888 577788888999999999998762 22211                      


Q ss_pred             CCCCcccccceeeEeecCCchhhhhhhccccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeecccccccCCCCcE
Q 048402          463 PLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLES  542 (677)
Q Consensus       463 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  542 (677)
                                                +++|++|++++|++++.+    ..+++|++|++++|+++ .+|+ ...+++|++
T Consensus       430 --------------------------~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~  477 (549)
T 2z81_A          430 --------------------------PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLV  477 (549)
T ss_dssp             --------------------------CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCE
T ss_pred             --------------------------cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCE
Confidence                                      235699999999998643    57899999999999999 6776 578999999


Q ss_pred             EECCCCcccccCccccccCCCCCEEEcccCcccccCCC
Q 048402          543 IDFSVNQLSGEIPQSMSNLMSLNHLNLSNNKLTGKIPS  580 (677)
Q Consensus       543 L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~  580 (677)
                      |++++|++++..|+.+..+++|++|++++|++.|.+|.
T Consensus       478 L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  515 (549)
T 2z81_A          478 MKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  515 (549)
T ss_dssp             EECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHH
T ss_pred             EecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCcc
Confidence            99999999998888999999999999999999999884

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=3e-47  Score=420.04  Aligned_cols=488  Identities=19%  Similarity=0.201  Sum_probs=405.1

Q ss_pred             CcccEEEccCCCCceecCCccccCCCCCCEEecCCCCCCCccCchhhcCCCCCCEEEccCCcCCcccchhhhhccccCcC
Q 048402            2 IHLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVSI   81 (677)
Q Consensus         2 ~~L~~L~Ls~n~~~~~i~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~   81 (677)
                      +++++|+|++|.++ .+++.+|.++++|++|+++ ++.+.+..+.+|.++++|++|++++|.+++..+..|..++     
T Consensus        28 ~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls-~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-----  100 (570)
T 2z63_A           28 FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLS-RCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS-----  100 (570)
T ss_dssp             SSCCEEECCSCCCC-EECTTTTTTCSSCCEEECT-TCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCT-----
T ss_pred             ccccEEEccCCccC-ccChhHhhCCCCceEEECC-CCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcc-----
Confidence            47899999999998 5657899999999999999 7778887788899999999999999999998889999999     


Q ss_pred             CccEEEcccCcCccccccccCCCCCCCEEECcCCcccc-CCCcCCCCCCCCCEEEccccccccccChhhhhCCCCC----
Q 048402           82 ELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVG-PIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKL----  156 (677)
Q Consensus        82 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~i~~~l~~~~~~~l~~L----  156 (677)
                      +|++|++++|.+++..+..++++++|++|++++|.+++ .+|..|+++++|++|++++|.++ .++...++.+++|    
T Consensus       101 ~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~~~  179 (570)
T 2z63_A          101 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLN  179 (570)
T ss_dssp             TCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCC-EECGGGGHHHHTCTTCC
T ss_pred             ccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccc-eecHHHccchhccchhh
Confidence            99999999999997766679999999999999999986 36999999999999999999998 5555578888888    


Q ss_pred             CEEEeeccccceecCCCCCCCcCccEEEeecccCCC-CCChhccCCCCCCEEEccCCCCC------CccchHHHhccC--
Q 048402          157 SWFRVGGNKLTLEVRHDWIPPFQLVALGFHNCYVGS-RFPQWLHSQKHLQYLNLLNSGMS------DLFPIRFLKSAF--  227 (677)
Q Consensus       157 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~l~~n~i~------~~~~~~~~~~~~--  227 (677)
                      +.+++++|.+....+..+... +|+.|++++|.... .++..+..+++++...+....+.      .... ..+..+.  
T Consensus       180 ~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~-~~~~~l~~l  257 (570)
T 2z63_A          180 LSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDK-SALEGLCNL  257 (570)
T ss_dssp             CEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCT-TTTGGGGGS
T ss_pred             hhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcch-hhhcccccc
Confidence            899999999999888887766 89999999986443 34566777888877665433221      1111 1112222  


Q ss_pred             CccEEECCCc-cCccccC-CccccccccEEEcccCCCCCCCCCC--CCCccEEEccCCcccccCChhHhhccCCCCCcCe
Q 048402          228 QLKFLDLGLN-QFHGQIT-DLTKVTQLLFLSVHSNNMSGPLPLI--SSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIG  303 (677)
Q Consensus       228 ~L~~L~Ls~n-~l~~~~~-~~~~~~~L~~L~l~~n~~~~~~~~~--~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~  303 (677)
                      .++.++++.+ .+.+..+ .+..+++|+.|++++|.+.+.....  + +|++|++++|.+.. +|.      ..+++|+.
T Consensus       258 ~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~-l~~------~~l~~L~~  329 (570)
T 2z63_A          258 TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQ-FPT------LKLKSLKR  329 (570)
T ss_dssp             EEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSS-CCB------CBCSSCCE
T ss_pred             chhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCcccc-cCc------ccccccCE
Confidence            4567777766 5554443 3455689999999999887543322  4 89999999999873 332      23789999


Q ss_pred             EecCCCCCcccCCcccccCCCCceecccCccccccC--CcCcCCCCCccEEECcCCcccccCCccCcCCCCCCEEecCCC
Q 048402          304 LKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKL--PNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGEN  381 (677)
Q Consensus       304 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n  381 (677)
                      |++++|.+.+..+.  ..+++|++|++++|.+++..  +..+..+++|+.|++++|.+++..+. +..+++|++|++++|
T Consensus       330 L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n  406 (570)
T 2z63_A          330 LTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHS  406 (570)
T ss_dssp             EEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTS
T ss_pred             EeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCC
Confidence            99999998866654  78899999999999998654  67788999999999999999866554 899999999999999


Q ss_pred             cccccCChhhhhccCCceEEEcCCCcccccCCccccCCCCCCEEeCCCCcCC-CCcCccccccccCccccccCcccCccC
Q 048402          382 EFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLF-GTIPKCINNITGMVAANSFTRSSQQYL  460 (677)
Q Consensus       382 ~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~p~~~~~l~~l~~~~~~~~~~~~~~  460 (677)
                      .+.+..+...+..+++|++|++++|.+.+..|..+.++++|++|++++|++. +.+|..+..+++               
T Consensus       407 ~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~---------------  471 (570)
T 2z63_A          407 NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN---------------  471 (570)
T ss_dssp             EEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT---------------
T ss_pred             ccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccC---------------
Confidence            9987666555558999999999999999989999999999999999999987 567766665554               


Q ss_pred             CCCCCCcccccceeeEeecCCchhhhhhhccccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeecccccccCCCC
Q 048402          461 PLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSL  540 (677)
Q Consensus       461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L  540 (677)
                                                     |+.|++++|++++..|..+.++++|++|++++|++++..|..|.++++|
T Consensus       472 -------------------------------L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  520 (570)
T 2z63_A          472 -------------------------------LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSL  520 (570)
T ss_dssp             -------------------------------CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred             -------------------------------CCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCC
Confidence                                           4999999999999889999999999999999999998888889999999


Q ss_pred             cEEECCCCcccccCcc
Q 048402          541 ESIDFSVNQLSGEIPQ  556 (677)
Q Consensus       541 ~~L~Ls~N~l~~~~p~  556 (677)
                      +.|++++|++++..|.
T Consensus       521 ~~L~l~~N~~~~~~~~  536 (570)
T 2z63_A          521 QKIWLHTNPWDCSCPR  536 (570)
T ss_dssp             CEEECCSSCBCCCTTT
T ss_pred             cEEEecCCcccCCCcc
Confidence            9999999999977663

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=8.5e-46  Score=414.27  Aligned_cols=512  Identities=20%  Similarity=0.229  Sum_probs=347.7

Q ss_pred             cccEEEccCCCCceecCCccccCCCCCCEEecCCCCCCCccCchhhcCCCCCCEEEccCCcCCcccchhhhhccccCcCC
Q 048402            3 HLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVSIE   82 (677)
Q Consensus         3 ~L~~L~Ls~n~~~~~i~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~   82 (677)
                      ++++|||++|.++ .+++.+|.++++|++|+|+ +|.+.+..+.+|.++++|++|+|++|++++..+..|..+.     +
T Consensus        53 ~~~~LdLs~N~i~-~l~~~~f~~l~~L~~L~Ls-~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~-----~  125 (635)
T 4g8a_A           53 STKNLDLSFNPLR-HLGSYSFFSFPELQVLDLS-RCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS-----S  125 (635)
T ss_dssp             TCCEEECTTSCCC-EECTTTTTTCTTCCEEECT-TCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCT-----T
T ss_pred             CCCEEEeeCCCCC-CCCHHHHhCCCCCCEEECC-CCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCC-----C
Confidence            5666777777666 5545666667777777776 5556655556666677777777777766666666666666     6


Q ss_pred             ccEEEcccCcCccccccccCCCCCCCEEECcCCccccC-CCcCCCCCCCCCEEEccccccccccChhhhhCCCCC----C
Q 048402           83 LESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGP-IPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKL----S  157 (677)
Q Consensus        83 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~i~~~l~~~~~~~l~~L----~  157 (677)
                      |++|++++|++++..+..|+++++|++|++++|.++.. .|..++.+++|++|++++|+++ .++...+..+.++    .
T Consensus       126 L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~l~~L~~l~~~~~  204 (635)
T 4g8a_A          126 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNL  204 (635)
T ss_dssp             CCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC-EECGGGGHHHHTCTTCCC
T ss_pred             CCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccc-ccccccccchhhhhhhhh
Confidence            77777777766665555666677777777777666542 4556666667777777776665 3333344443332    3


Q ss_pred             EEEeeccccceecCCCCCCCcCccEEEeecccCCC-CCChhccCCCCCCEEEccCCCCC------CccchHHHhccCCcc
Q 048402          158 WFRVGGNKLTLEVRHDWIPPFQLVALGFHNCYVGS-RFPQWLHSQKHLQYLNLLNSGMS------DLFPIRFLKSAFQLK  230 (677)
Q Consensus       158 ~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~l~~n~i~------~~~~~~~~~~~~~L~  230 (677)
                      .++++.|.+....+..+. ...++.+++.+|.... ..+..+..+..++...+..+...      ...... +.....+.
T Consensus       205 ~~~ls~n~l~~i~~~~~~-~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~-~~~~~~l~  282 (635)
T 4g8a_A          205 SLDLSLNPMNFIQPGAFK-EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA-LEGLCNLT  282 (635)
T ss_dssp             EEECTTCCCCEECTTTTT-TCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTT-TGGGGGSE
T ss_pred             hhhcccCcccccCccccc-chhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccc-cccccchh
Confidence            566666666554443332 2344556665554332 12333455555555444322211      111111 11222333


Q ss_pred             EEECCCccC----ccccCCccccccccEEEcccCCCCCCCCCC-CCCccEEEccCCcccccCChhHhhccCCCCCcCeEe
Q 048402          231 FLDLGLNQF----HGQITDLTKVTQLLFLSVHSNNMSGPLPLI-SSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLK  305 (677)
Q Consensus       231 ~L~Ls~n~l----~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~  305 (677)
                      ..++..+..    .+....+.....++.+.+.++.+....+.. ...++.|++.+|.+.+....       .++.++.++
T Consensus       283 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-------~l~~L~~l~  355 (635)
T 4g8a_A          283 IEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTL-------KLKSLKRLT  355 (635)
T ss_dssp             EEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCC-------BCTTCCEEE
T ss_pred             hhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcc-------cchhhhhcc
Confidence            333332221    122223334466777777777665443322 56788888888877654332       256788888


Q ss_pred             cCCCCCcccCCcccccCCCCceecccCcccc--ccCCcCcCCCCCccEEECcCCcccccCCccCcCCCCCCEEecCCCcc
Q 048402          306 LKDNSLQGEIPDCWMSYQNLEILELSNNKFT--GKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEF  383 (677)
Q Consensus       306 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l  383 (677)
                      +..|......  .+..+++|+.+++++|.+.  +..+..+..+.+|+.+++..|.... .+..+..+++|+.+++..+..
T Consensus       356 l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~  432 (635)
T 4g8a_A          356 FTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNL  432 (635)
T ss_dssp             EESCCSCCBC--CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEE
T ss_pred             cccccCCCCc--ccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhccc
Confidence            8888765432  3457888999999988775  3445566678889999998888774 445677889999999998887


Q ss_pred             cccCChhhhhccCCceEEEcCCCcccccCCccccCCCCCCEEeCCCCcCCC-CcCccccccccCccccccCcccCccCCC
Q 048402          384 VGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFG-TIPKCINNITGMVAANSFTRSSQQYLPL  462 (677)
Q Consensus       384 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~p~~~~~l~~l~~~~~~~~~~~~~~~~  462 (677)
                      ....+...+..+++++.++++.|.+.+..+..+..++.++.|++++|++.. ..|..+..                    
T Consensus       433 ~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~--------------------  492 (635)
T 4g8a_A          433 KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE--------------------  492 (635)
T ss_dssp             ESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTT--------------------
T ss_pred             cccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhh--------------------
Confidence            766666666678889999999999988888888888999999999887532 34554444                    


Q ss_pred             CCCCcccccceeeEeecCCchhhhhhhccccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeecccccccCCCCcE
Q 048402          463 PLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLES  542 (677)
Q Consensus       463 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  542 (677)
                                                +++|++|||++|++++..|..|.++++|++|+|++|++++..|..|+++++|++
T Consensus       493 --------------------------l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~  546 (635)
T 4g8a_A          493 --------------------------LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQV  546 (635)
T ss_dssp             --------------------------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCE
T ss_pred             --------------------------ccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCE
Confidence                                      445599999999999999999999999999999999999888889999999999


Q ss_pred             EECCCCcccccCccccccC-CCCCEEEcccCcccccCCC
Q 048402          543 IDFSVNQLSGEIPQSMSNL-MSLNHLNLSNNKLTGKIPS  580 (677)
Q Consensus       543 L~Ls~N~l~~~~p~~l~~l-~~L~~L~ls~N~l~~~~p~  580 (677)
                      |+|++|++++..|+.|..+ ++|++|++++|++.|.|..
T Consensus       547 L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~  585 (635)
T 4g8a_A          547 LDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH  585 (635)
T ss_dssp             EECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGG
T ss_pred             EECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCc
Confidence            9999999999999999988 6899999999999998864

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=6e-48  Score=427.61  Aligned_cols=443  Identities=16%  Similarity=0.217  Sum_probs=255.5

Q ss_pred             CCCCEEecCCCCCCCccCchhhcCCCCCCEEEccCCcC------Cc------ccchhhhhccccCcCCccEEEcccCcCc
Q 048402           27 TSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHL------SQ------EISEILNIFSGCVSIELESLDLRSSSIS   94 (677)
Q Consensus        27 ~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~n~l------~~------~~~~~~~~l~~~~~~~L~~L~L~~n~l~   94 (677)
                      .+++.|+|+ ++.+.|.+|.+++++++|++|+|++|.+      .+      .+|...  +.     .|+ ++++++.+.
T Consensus        81 ~~V~~L~L~-~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~-----~l~-l~l~~~~l~  151 (636)
T 4eco_A           81 GRVTGLSLE-GFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQ-----KMR-MHYQKTFVD  151 (636)
T ss_dssp             CCEEEEECT-TSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HH-----HHH-THHHHHHTC
T ss_pred             CCEEEEEec-CcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HH-----HHH-hhHHHhhhc
Confidence            356666666 5556666666666666666666666644      11      222222  22     344 455555444


Q ss_pred             cccccccCC-------------------CCCCCEEEC--cCCccccCCCcCCCCCCCCCEEEccccccccc---------
Q 048402           95 GHLTDQLGQ-------------------FKNLDNLDL--ANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGT---------  144 (677)
Q Consensus        95 ~~~~~~~~~-------------------l~~L~~L~L--~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~---------  144 (677)
                      +.+|..+..                   ...++.+.+  .+|.+++ +|..++++++|++|++++|.+++.         
T Consensus       152 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~  230 (636)
T 4eco_A          152 YDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENE  230 (636)
T ss_dssp             CCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCT
T ss_pred             cCchhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCcccccccccccccc
Confidence            444433331                   111222222  2456666 677777777777777777777653         


Q ss_pred             --------cChhhhh--CCCCCCEEEeeccccceecCCCCCCCcCccEEEeeccc-CCC-CCChhccCC------CCCCE
Q 048402          145 --------LSEIHFS--NLTKLSWFRVGGNKLTLEVRHDWIPPFQLVALGFHNCY-VGS-RFPQWLHSQ------KHLQY  206 (677)
Q Consensus       145 --------l~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~-~~~-~~~~~~~~l------~~L~~  206 (677)
                              +|. .++  ++++|++|++++|.+.+..+..+..+++|+.|++++|. +.+ .+|..++.+      ++|++
T Consensus       231 ~~~~~~~~ip~-~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~  309 (636)
T 4eco_A          231 NSEYAQQYKTE-DLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQI  309 (636)
T ss_dssp             TSHHHHHHTTS-CCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCE
T ss_pred             ccchhcccCch-hhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCE
Confidence                    665 555  77777777777777777777777777777777777776 666 677777665      88999


Q ss_pred             EEccCCCCCCccch-HHHhccCCccEEECCCccCccccCCccccccccEEEcccCCCCCCCCCCCCCccEEEccCCcccc
Q 048402          207 LNLLNSGMSDLFPI-RFLKSAFQLKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNNMSGPLPLISSNLVYLDLSNNSFSG  285 (677)
Q Consensus       207 L~l~~n~i~~~~~~-~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~  285 (677)
                      |++++|.++.+ |. ..+..+++|++|++++|.+.+.++.+..+++|+.|++++|.++                      
T Consensus       310 L~L~~n~l~~i-p~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~----------------------  366 (636)
T 4eco_A          310 IYIGYNNLKTF-PVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQIT----------------------  366 (636)
T ss_dssp             EECCSSCCSSC-CCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEE----------------------
T ss_pred             EECCCCcCCcc-CchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccc----------------------
Confidence            99999988844 44 2446688899999999888866654444444444444333332                      


Q ss_pred             cCChhHhhccCCCCC-cCeEecCCCCCcccCCcccccCC--CCceecccCccccccCCcCcC-------CCCCccEEECc
Q 048402          286 SVSHYLCYRINEPKS-LIGLKLKDNSLQGEIPDCWMSYQ--NLEILELSNNKFTGKLPNSLG-------SLTSLIWLLLG  355 (677)
Q Consensus       286 ~~~~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~~~~l~--~L~~L~L~~n~l~~~~~~~~~-------~l~~L~~L~l~  355 (677)
                      .+|..    +..+++ |++|++++|.++ .+|..+..++  +|++|++++|.+.+..|..+.       .+++|+.|+++
T Consensus       367 ~lp~~----l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls  441 (636)
T 4eco_A          367 EIPAN----FCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLS  441 (636)
T ss_dssp             ECCTT----SEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECC
T ss_pred             cccHh----hhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECc
Confidence            11111    111334 445555555444 3444443322  455555555555544444444       44445555555


Q ss_pred             CCcccccCCccCcCCCCCCEEecCCCcccccCChhhhhccCCceEEEcCCCcccccCCccccCCCCCCEEeCCCCcCCCC
Q 048402          356 KNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGT  435 (677)
Q Consensus       356 ~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~  435 (677)
                      +|+++...+..+..+++|++|++++|.+. .+|...+....                 ..+.++++|++|++++|+++ .
T Consensus       442 ~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~-----------------~~~~~l~~L~~L~Ls~N~l~-~  502 (636)
T 4eco_A          442 NNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDEN-----------------ENFKNTYLLTSIDLRFNKLT-K  502 (636)
T ss_dssp             SSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETT-----------------EECTTGGGCCEEECCSSCCC-B
T ss_pred             CCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhcccc-----------------ccccccCCccEEECcCCcCC-c
Confidence            55544322223334445555555555444 44433322111                 00111225555555555555 3


Q ss_pred             cCcccc--ccccCccccccCcccCccCCCCCCCcccccceeeEeecCCchhhhhhhccccEEEcccCcccccCCcccCCC
Q 048402          436 IPKCIN--NITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNL  513 (677)
Q Consensus       436 ~p~~~~--~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l  513 (677)
                      +|..+.  .                                              +++|+.|++++|++++ +|..+.++
T Consensus       503 lp~~~~~~~----------------------------------------------l~~L~~L~Ls~N~l~~-ip~~~~~l  535 (636)
T 4eco_A          503 LSDDFRATT----------------------------------------------LPYLVGIDLSYNSFSK-FPTQPLNS  535 (636)
T ss_dssp             CCGGGSTTT----------------------------------------------CTTCCEEECCSSCCSS-CCCGGGGC
T ss_pred             cChhhhhcc----------------------------------------------CCCcCEEECCCCCCCC-cChhhhcC
Confidence            443332  2                                              2233556666666654 55566666


Q ss_pred             CCCcEEec------cCCcceeecccccccCCCCcEEECCCCcccccCccccccCCCCCEEEcccCccccc
Q 048402          514 KATQSLNF------SHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLSNNKLTGK  577 (677)
Q Consensus       514 ~~L~~L~L------s~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~  577 (677)
                      ++|++|++      ++|++.+.+|..+.++++|++|++++|++. .+|..+.  ++|+.||+++|++.+.
T Consensus       536 ~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~  602 (636)
T 4eco_A          536 STLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKIT--PNISVLDIKDNPNISI  602 (636)
T ss_dssp             SSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--TTCCEEECCSCTTCEE
T ss_pred             CCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCC-ccCHhHh--CcCCEEECcCCCCccc
Confidence            66666666      567788888888888888888888888884 7777665  7888889988888754

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=5.7e-47  Score=412.34  Aligned_cols=458  Identities=18%  Similarity=0.203  Sum_probs=313.5

Q ss_pred             cEEEccCCCCceecCCccccCCCCCCEEecCCCCCCCccCchhhcCCCCCCEEEccCCcCCcccchhhhhccccCcCCcc
Q 048402            5 EYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVSIELE   84 (677)
Q Consensus         5 ~~L~Ls~n~~~~~i~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~L~   84 (677)
                      ++||+++|.++ .+ |..+.  ++|++|+++ ++.+.+..|.+|.++++|++|++++|.+++..|..+..++     +|+
T Consensus         3 ~~l~ls~n~l~-~i-p~~~~--~~L~~L~Ls-~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-----~L~   72 (520)
T 2z7x_B            3 FLVDRSKNGLI-HV-PKDLS--QKTTILNIS-QNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQ-----ELE   72 (520)
T ss_dssp             CEEECTTSCCS-SC-CCSCC--TTCSEEECC-SSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCT-----TCC
T ss_pred             ceEecCCCCcc-cc-ccccc--ccccEEECC-CCcccccChhhccccccccEEecCCCccCCcChHHhhccc-----CCC
Confidence            57888888888 67 44443  788888888 7777777777888888888888888888887788888888     888


Q ss_pred             EEEcccCcCccccccccCCCCCCCEEECcCCcccc-CCCcCCCCCCCCCEEEccccccccccChhhhhCCCCC--CEEEe
Q 048402           85 SLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVG-PIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKL--SWFRV  161 (677)
Q Consensus        85 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~i~~~l~~~~~~~l~~L--~~L~l  161 (677)
                      +|++++|+++. +|..  .+++|++|++++|.+++ ..|..|+++++|++|++++|.+.+    ..+..+++|  +.|++
T Consensus        73 ~L~Ls~N~l~~-lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~L~L~~L~l  145 (520)
T 2z7x_B           73 YLDLSHNKLVK-ISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK----SSVLPIAHLNISKVLL  145 (520)
T ss_dssp             EEECCSSCCCE-EECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG----GGGGGGTTSCEEEEEE
T ss_pred             EEecCCCceee-cCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch----hhccccccceeeEEEe
Confidence            88888888884 5544  78888888888888876 357788888888888888888763    246666666  77777


Q ss_pred             ecccc--ceecCCCCCCCc-CccEEEeecccCCCCCChhccCCCCCCEEEccCCCCCCccchHHHhccCCccEEECCCcc
Q 048402          162 GGNKL--TLEVRHDWIPPF-QLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQ  238 (677)
Q Consensus       162 ~~n~l--~~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~  238 (677)
                      ++|.+  .+..+..+..+. ...                        .+++++|.+.+..+...+..+++|+.+++++|.
T Consensus       146 ~~n~l~~~~~~~~~l~~l~~~~l------------------------~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~  201 (520)
T 2z7x_B          146 VLGETYGEKEDPEGLQDFNTESL------------------------HIVFPTNKEFHFILDVSVKTVANLELSNIKCVL  201 (520)
T ss_dssp             EECTTTTSSCCTTTTTTCCEEEE------------------------EEECCSSSCCCCCCCCCCTTCSEEEECCEEECC
T ss_pred             ecccccccccccccccccccceE------------------------EEEeccCcchhhhhhhhhhcccceeeccccccc
Confidence            77776  444333333322 122                        233444444333333223334445555554443


Q ss_pred             -------CccccCCccccccccEEEcccCCCCCCCCCCCCCccEEEccCCcccccCChhHhhccCCCCCcCeEecCCCCC
Q 048402          239 -------FHGQITDLTKVTQLLFLSVHSNNMSGPLPLISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSL  311 (677)
Q Consensus       239 -------l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l  311 (677)
                             +.+.++.+..+++|+.|                     ++++|.+++.....+.... ..++|++|++++|.+
T Consensus       202 ~~~~~~~~~~~~~~l~~l~~L~~L---------------------~l~~~~l~~~~~~~~~~~~-~~~~L~~L~l~~n~l  259 (520)
T 2z7x_B          202 EDNKCSYFLSILAKLQTNPKLSNL---------------------TLNNIETTWNSFIRILQLV-WHTTVWYFSISNVKL  259 (520)
T ss_dssp             STTTTHHHHHHHHGGGGCTTCCEE---------------------EEEEEEEEHHHHHHHHHHH-HTSSCSEEEEEEEEE
T ss_pred             cccccceeecchhhhccccchhhc---------------------cccccccCHHHHHHHHHHh-hhCcccEEEeecccc
Confidence                   33333333333334443                     3443333322222111111 134677777777777


Q ss_pred             cccCCccc-----ccCCCCceecccCccccccCC-cCcCCC---CCccEEECcCCcccccCCccCcCCCCCCEEecCCCc
Q 048402          312 QGEIPDCW-----MSYQNLEILELSNNKFTGKLP-NSLGSL---TSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENE  382 (677)
Q Consensus       312 ~~~~~~~~-----~~l~~L~~L~L~~n~l~~~~~-~~~~~l---~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~  382 (677)
                      .+.+|..+     ..+++|+.+++++|.+  .+| ..+..+   .+|+.|++++|.+....  .+..+++|++|++++|.
T Consensus       260 ~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~  335 (520)
T 2z7x_B          260 QGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNL  335 (520)
T ss_dssp             ESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSC
T ss_pred             cCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCc
Confidence            66666666     6777777777777776  344 333333   56777777777765322  12567778888888887


Q ss_pred             ccccCChhhhhccCCceEEEcCCCcccc--cCCccccCCCCCCEEeCCCCcCCCCcCcc-ccccccCccccccCcccCcc
Q 048402          383 FVGNIPTWTGERFSRMVVLILRSNNFHG--PLPTRLCDLAFLQILDLADNNLFGTIPKC-INNITGMVAANSFTRSSQQY  459 (677)
Q Consensus       383 l~~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~-~~~l~~l~~~~~~~~~~~~~  459 (677)
                      +.+.+|..+. .+++|++|++++|++++  .+|..+..+++|++|++++|++.+.+|.. +..                 
T Consensus       336 l~~~~~~~~~-~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~-----------------  397 (520)
T 2z7x_B          336 LTDTVFENCG-HLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSW-----------------  397 (520)
T ss_dssp             CCTTTTTTCC-CCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCC-----------------
T ss_pred             cChhhhhhhc-cCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhcc-----------------
Confidence            7766666554 67788888888888775  45567788888888888888887655542 333                 


Q ss_pred             CCCCCCCcccccceeeEeecCCchhhhhhhccccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeecccccccCCC
Q 048402          460 LPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRS  539 (677)
Q Consensus       460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~  539 (677)
                                                   +++|+.|++++|++++..|..+.  ++|++|++++|+++ .+|..+..+++
T Consensus       398 -----------------------------l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~  445 (520)
T 2z7x_B          398 -----------------------------TKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEA  445 (520)
T ss_dssp             -----------------------------CTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTT
T ss_pred             -----------------------------CccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCC
Confidence                                         34458888999888877776665  78999999999999 78888889999


Q ss_pred             CcEEECCCCcccccCccc-cccCCCCCEEEcccCcccccCCC
Q 048402          540 LESIDFSVNQLSGEIPQS-MSNLMSLNHLNLSNNKLTGKIPS  580 (677)
Q Consensus       540 L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~ls~N~l~~~~p~  580 (677)
                      |++|++++|+++ .+|.. +..+++|++|++++|++.|.++.
T Consensus       446 L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~~  486 (520)
T 2z7x_B          446 LQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR  486 (520)
T ss_dssp             CCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred             CCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcccCCc
Confidence            999999999999 55554 89999999999999999998764

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=2.8e-46  Score=410.00  Aligned_cols=491  Identities=20%  Similarity=0.225  Sum_probs=382.8

Q ss_pred             CCCCEEecCCCCCCCccCchhhcCCCCCCEEEccCCcCCcccchhhhhccccCcCCccEEEcccCcCccccccccCCCCC
Q 048402           27 TSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKN  106 (677)
Q Consensus        27 ~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~  106 (677)
                      +...+.|++ ++.++ .+|..+.  ++|++|++++|.+++..|..+..++     +|++|++++|++++..|.+|.++++
T Consensus         5 ~~~~~c~~~-~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~-----~L~~L~Ls~n~i~~~~~~~~~~l~~   75 (549)
T 2z81_A            5 DASGVCDGR-SRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACA-----NLQVLILKSSRINTIEGDAFYSLGS   75 (549)
T ss_dssp             CTTSEEECT-TSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCT-----TCCEEECTTSCCCEECTTTTTTCTT
T ss_pred             CCCceEECC-CCccc-cccccCC--CCccEEECcCCccCccChhhhhcCC-----cccEEECCCCCcCccChhhcccccc
Confidence            344455676 55555 4565544  6899999999999988888888888     9999999999999888889999999


Q ss_pred             CCEEECcCCccccCCCcCCCCCCCCCEEEcccccccc-ccChhhhhCCCCCCEEEeeccc-cceecCCCCCCCcCccEEE
Q 048402          107 LDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNG-TLSEIHFSNLTKLSWFRVGGNK-LTLEVRHDWIPPFQLVALG  184 (677)
Q Consensus       107 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~-~l~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~  184 (677)
                      |++|++++|.+++..|..|+++++|++|++++|.+++ ..+. .+.++++|++|++++|. +.......+..+++|++|+
T Consensus        76 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~  154 (549)
T 2z81_A           76 LEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTS-LFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELE  154 (549)
T ss_dssp             CCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSC-SCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEE
T ss_pred             CCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhh-hhhccCCccEEECCCCccccccCHhhhhcccccCeee
Confidence            9999999999997777779999999999999999874 2344 68899999999999998 4555557888899999999


Q ss_pred             eecccCCCCCChhccCCCCCCEEEccCCCCCCccchHHHhccCCccEEECCCccCccccCCccccccccEEEcccCCCCC
Q 048402          185 FHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNNMSG  264 (677)
Q Consensus       185 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~  264 (677)
                      +++|.+.+..|..+..+++|++|++++|.+... +..+...+++|++|++++|.+.+......                 
T Consensus       155 L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-----------------  216 (549)
T 2z81_A          155 IKALSLRNYQSQSLKSIRDIHHLTLHLSESAFL-LEIFADILSSVRYLELRDTNLARFQFSPL-----------------  216 (549)
T ss_dssp             EEETTCCEECTTTTTTCSEEEEEEEECSBSTTH-HHHHHHSTTTBSEEEEESCBCTTCCCCCC-----------------
T ss_pred             ccCCcccccChhhhhccccCceEecccCccccc-chhhHhhcccccEEEccCCcccccccccc-----------------
Confidence            999999988899999999999999999887654 55555667888888888887765321000                 


Q ss_pred             CCCCCCCCccEEEccCCcccccCChhHhhccCCCCCcCeEecCCCCCcccC------CcccccCCCCceecccCcccccc
Q 048402          265 PLPLISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEI------PDCWMSYQNLEILELSNNKFTGK  338 (677)
Q Consensus       265 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~------~~~~~~l~~L~~L~L~~n~l~~~  338 (677)
                      .....+++|+.|++++|.+++..+..+...+..+++++.+++++|.+.+..      ...+..+++|+.|++.++.+...
T Consensus       217 ~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~  296 (549)
T 2z81_A          217 PVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQF  296 (549)
T ss_dssp             SSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCG
T ss_pred             chhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchh
Confidence            011225678888888888887766666666667889999999999876532      13356788999999999877632


Q ss_pred             -----CCcCcCCCCCccEEECcCCcccccCCccC-cCCCCCCEEecCCCcccccCChh--hhhccCCceEEEcCCCcccc
Q 048402          339 -----LPNSLGSLTSLIWLLLGKNRLSGTIPVSL-KNCTALESLDVGENEFVGNIPTW--TGERFSRMVVLILRSNNFHG  410 (677)
Q Consensus       339 -----~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~--~~~~l~~L~~L~L~~n~l~~  410 (677)
                           .+..+...++|+.|++++|++. .+|..+ ..+++|++|++++|.+.+.+|..  ....+++|++|++++|++++
T Consensus       297 ~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~  375 (549)
T 2z81_A          297 YLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRS  375 (549)
T ss_dssp             GGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCC
T ss_pred             hhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccc
Confidence                 1222334578999999999997 556555 57999999999999998766532  12368999999999999986


Q ss_pred             cCC--ccccCCCCCCEEeCCCCcCCCCcCccccccccCccccccCcccCccCCCCCCCcccccceeeEeecCCchhhhhh
Q 048402          411 PLP--TRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEI  488 (677)
Q Consensus       411 ~~~--~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  488 (677)
                      ..+  ..+..+++|++|++++|+++ .+|..+..+                                             
T Consensus       376 ~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~---------------------------------------------  409 (549)
T 2z81_A          376 MQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWP---------------------------------------------  409 (549)
T ss_dssp             HHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCC---------------------------------------------
T ss_pred             cccchhhhhcCCCCCEEECCCCCCc-cCChhhccc---------------------------------------------
Confidence            532  46888999999999999997 566655444                                             


Q ss_pred             hccccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeecccccccCCCCcEEECCCCcccccCccccccCCCCCEEE
Q 048402          489 LNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLN  568 (677)
Q Consensus       489 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  568 (677)
                       ++|++|++++|++++ +|..+.  ++|++|++++|++++.    +..+++|++|++++|+++ .+|+ ...+++|++|+
T Consensus       410 -~~L~~L~Ls~N~l~~-l~~~~~--~~L~~L~Ls~N~l~~~----~~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~  479 (549)
T 2z81_A          410 -EKMRFLNLSSTGIRV-VKTCIP--QTLEVLDVSNNNLDSF----SLFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMK  479 (549)
T ss_dssp             -TTCCEEECTTSCCSC-CCTTSC--TTCSEEECCSSCCSCC----CCCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEE
T ss_pred             -ccccEEECCCCCccc-ccchhc--CCceEEECCCCChhhh----cccCChhcEEECCCCccC-cCCC-cccCccCCEEe
Confidence             445999999999984 444332  6899999999999864    257899999999999999 6776 56799999999


Q ss_pred             cccCcccccCCCC-CCCCCcCcccccCCCCCCCCCCCCCC
Q 048402          569 LSNNKLTGKIPSS-TQLQSFDASSFTGNDLCGAPLPKNCA  607 (677)
Q Consensus       569 ls~N~l~~~~p~~-~~~~~l~~~~~~~n~l~~~~~~~~c~  607 (677)
                      +++|++++.+|.. ..+..++.+++++|     |+.|.|+
T Consensus       480 Ls~N~l~~~~~~~~~~l~~L~~L~l~~N-----~~~~~~~  514 (549)
T 2z81_A          480 ISRNQLKSVPDGIFDRLTSLQKIWLHTN-----PWDCSCP  514 (549)
T ss_dssp             CCSSCCCCCCTTGGGGCTTCCEEECCSS-----CBCCCHH
T ss_pred             cCCCccCCcCHHHHhcCcccCEEEecCC-----CccCCCc
Confidence            9999999888763 56677777777665     5556663

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=1e-45  Score=409.80  Aligned_cols=442  Identities=20%  Similarity=0.245  Sum_probs=318.2

Q ss_pred             CCCCEEEccCCcCCcccchhhhhccccCcCCccEEEcccCcCc------c------ccccccCCCCCCCEEECcCCcccc
Q 048402           52 CNLKSINLRGVHLSQEISEILNIFSGCVSIELESLDLRSSSIS------G------HLTDQLGQFKNLDNLDLANNSIVG  119 (677)
Q Consensus        52 ~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~------~------~~~~~~~~l~~L~~L~L~~n~l~~  119 (677)
                      .+++.|+|+++.+.|.+|..++.++     +|++|+|++|.+.      +      .+|...  +.+|+ +++++|.+.+
T Consensus        81 ~~V~~L~L~~~~l~g~lp~~l~~L~-----~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~  152 (636)
T 4eco_A           81 GRVTGLSLEGFGASGRVPDAIGQLT-----ELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDY  152 (636)
T ss_dssp             CCEEEEECTTSCCEEEECGGGGGCT-----TCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCC
T ss_pred             CCEEEEEecCcccCCcCChHHhcCc-----cceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhcc
Confidence            5899999999999999999999999     9999999999762      2      223322  44566 7788887776


Q ss_pred             CCCcCCCC-------------------CCCCCEEEcc--ccccccccChhhhhCCCCCCEEEeecccccee---------
Q 048402          120 PIPQSLGH-------------------LSNLRVLQIY--NNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLE---------  169 (677)
Q Consensus       120 ~~~~~~~~-------------------l~~L~~L~L~--~n~i~~~l~~~~~~~l~~L~~L~l~~n~l~~~---------  169 (677)
                      ..|..+..                   ...++.+.+.  .|+++| +|. .++++++|++|++++|.+++.         
T Consensus       153 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~-~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~  230 (636)
T 4eco_A          153 DPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSK-AVMRLTKLRQFYMGNSPFVAENICEAWENE  230 (636)
T ss_dssp             CGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECG-GGGGCTTCCEEEEESCCCCGGGBSSSCSCT
T ss_pred             CchhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCH-HHhcccCCCEEECcCCcccccccccccccc
Confidence            66665541                   1123333333  578887 888 799999999999999999985         


Q ss_pred             --------cCCCCC--CCcCccEEEeecccCCCCCChhccCCCCCCEEEccCCC-CCC-ccchHHHh-----ccCCccEE
Q 048402          170 --------VRHDWI--PPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSG-MSD-LFPIRFLK-----SAFQLKFL  232 (677)
Q Consensus       170 --------~~~~~~--~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~-i~~-~~~~~~~~-----~~~~L~~L  232 (677)
                              .+..+.  .+++|++|++++|.+.+.+|..++++++|++|++++|+ +++ ..|..+..     .+++|++|
T Consensus       231 ~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L  310 (636)
T 4eco_A          231 NSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQII  310 (636)
T ss_dssp             TSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEE
T ss_pred             ccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEE
Confidence                    788888  99999999999999999999999999999999999998 887 66766643     23899999


Q ss_pred             ECCCccCccccC--CccccccccEEEcccCCCCCCCCCCCCCccEEEccCCcccccCChhHhhccCCCCCcCeEecCCCC
Q 048402          233 DLGLNQFHGQIT--DLTKVTQLLFLSVHSNNMSGPLPLISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNS  310 (677)
Q Consensus       233 ~Ls~n~l~~~~~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~  310 (677)
                      ++++|.++..+.  .+..                                                 +++|+.|++++|.
T Consensus       311 ~L~~n~l~~ip~~~~l~~-------------------------------------------------l~~L~~L~L~~N~  341 (636)
T 4eco_A          311 YIGYNNLKTFPVETSLQK-------------------------------------------------MKKLGMLECLYNQ  341 (636)
T ss_dssp             ECCSSCCSSCCCHHHHTT-------------------------------------------------CTTCCEEECCSCC
T ss_pred             ECCCCcCCccCchhhhcc-------------------------------------------------CCCCCEEeCcCCc
Confidence            999998873222  1222                                                 3444455555555


Q ss_pred             CcccCCcccccCCCCceecccCccccccCCcCcCCCCC-ccEEECcCCcccccCCccCcCCC--CCCEEecCCCcccccC
Q 048402          311 LQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTS-LIWLLLGKNRLSGTIPVSLKNCT--ALESLDVGENEFVGNI  387 (677)
Q Consensus       311 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~l~~n~~~~~~~~~~~~l~--~L~~L~l~~n~l~~~~  387 (677)
                      +.|.+| .|..+++|++|++++|+++ .+|..+..+++ |+.|++++|+++ .+|..+..++  +|++|++++|.+.+.+
T Consensus       342 l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~  418 (636)
T 4eco_A          342 LEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVD  418 (636)
T ss_dssp             CEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTT
T ss_pred             Cccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcc
Confidence            544444 4555555555555555555 44555555555 555555555555 4444444433  5555555555555544


Q ss_pred             Chhhhh------ccCCceEEEcCCCcccccCCccccCCCCCCEEeCCCCcCCCCcCccccccccCccccccCcccCccCC
Q 048402          388 PTWTGE------RFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLP  461 (677)
Q Consensus       388 ~~~~~~------~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~  461 (677)
                      |..+..      .+++|++|++++|.+++..+..+..+++|++|++++|+++ .+|........                
T Consensus       419 p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~----------------  481 (636)
T 4eco_A          419 GKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDEN----------------  481 (636)
T ss_dssp             TCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETT----------------
T ss_pred             hhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhcccc----------------
Confidence            433320      3456667777777666443344555777777777777776 55543221100                


Q ss_pred             CCCCCcccccceeeEeecCCchhhhhhhccccEEEcccCcccccCCcccC--CCCCCcEEeccCCcceeecccccccCCC
Q 048402          462 LPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMT--NLKATQSLNFSHNSFTGRIPESIGAMRS  539 (677)
Q Consensus       462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~--~l~~L~~L~Ls~n~l~~~~p~~~~~l~~  539 (677)
                                            .....+++|+.|++++|+++ .+|..+.  .+++|++|+|++|++++ +|..+.++++
T Consensus       482 ----------------------~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~  537 (636)
T 4eco_A          482 ----------------------ENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSST  537 (636)
T ss_dssp             ----------------------EECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSS
T ss_pred             ----------------------ccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCC
Confidence                                  00012456799999999999 6888887  99999999999999996 8999999999


Q ss_pred             CcEEEC------CCCcccccCccccccCCCCCEEEcccCcccccCCCCCCCCCcCcccccCCCCC
Q 048402          540 LESIDF------SVNQLSGEIPQSMSNLMSLNHLNLSNNKLTGKIPSSTQLQSFDASSFTGNDLC  598 (677)
Q Consensus       540 L~~L~L------s~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n~l~  598 (677)
                      |++|++      ++|++.+.+|..+..+++|++|++++|++ +.+|.... ..++.+++++|.+.
T Consensus       538 L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~-~~L~~L~Ls~N~l~  600 (636)
T 4eco_A          538 LKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT-PNISVLDIKDNPNI  600 (636)
T ss_dssp             CCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC-TTCCEEECCSCTTC
T ss_pred             CCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh-CcCCEEECcCCCCc
Confidence            999999      56888889999999999999999999999 67887633 77888888887544

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=3.7e-43  Score=392.85  Aligned_cols=525  Identities=19%  Similarity=0.158  Sum_probs=382.0

Q ss_pred             EEccCCCCceecCCccccCCCCCCEEecCCCCCCCccCchhhcCCCCCCEEEccCCcCCcccchhhhhccccCcCCccEE
Q 048402            7 LSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVSIELESL   86 (677)
Q Consensus         7 L~Ls~n~~~~~i~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~L~~L   86 (677)
                      .+-++.+++ .| |..+-  +++++|||+ +|.+++..+.+|.++++|++|+|++|+|++..+.+|..++     +|++|
T Consensus        36 ~~c~~~~l~-~v-P~~lp--~~~~~LdLs-~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~-----~L~~L  105 (635)
T 4g8a_A           36 YQCMELNFY-KI-PDNLP--FSTKNLDLS-FNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLS-----HLSTL  105 (635)
T ss_dssp             EECTTSCCS-SC-CSSSC--TTCCEEECT-TSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCT-----TCCEE
T ss_pred             EECCCCCcC-cc-CCCCC--cCCCEEEee-CCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCC-----CCCEE
Confidence            344444555 56 43331  478999999 7777777777899999999999999999888888888888     89999


Q ss_pred             EcccCcCccccccccCCCCCCCEEECcCCccccCCCcCCCCCCCCCEEEccccccccc-cChhhhhCCCCCCEEEeeccc
Q 048402           87 DLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGT-LSEIHFSNLTKLSWFRVGGNK  165 (677)
Q Consensus        87 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~-l~~~~~~~l~~L~~L~l~~n~  165 (677)
                      +|++|++++..+..|.++++|++|++++|.+++..+..|+++++|++|++++|.+++. +|. .+.++++|++|++++|.
T Consensus       106 ~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~-~~~~l~~L~~L~L~~N~  184 (635)
T 4g8a_A          106 ILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE-YFSNLTNLEHLDLSSNK  184 (635)
T ss_dssp             ECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCG-GGGGCTTCCEEECCSSC
T ss_pred             EccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCch-hhccchhhhhhcccCcc
Confidence            9999999887778889999999999999999877777889999999999999988642 344 78888999999999999


Q ss_pred             cceecCCCCCCCcC----ccEEEeecccCCCCCChhccCCCCCCEEEccCCCCCCccchHHHhccCCccEEECCCccCcc
Q 048402          166 LTLEVRHDWIPPFQ----LVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHG  241 (677)
Q Consensus       166 l~~~~~~~~~~~~~----L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~  241 (677)
                      +++..+..+..+.+    ...++++.|.+....+..+. ...++.+++.+|..........+..+..++...+..+....
T Consensus       185 l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~-~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~  263 (635)
T 4g8a_A          185 IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN  263 (635)
T ss_dssp             CCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTT-TCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTT
T ss_pred             ccccccccccchhhhhhhhhhhhcccCcccccCccccc-chhhhhhhhhcccccccccchhhcCCccccccccccccccc
Confidence            88877777655443    34677788877765555443 34567788888766544444444556666666553332211


Q ss_pred             ------c-cCCccccccccEEEcccCCCCCC------CCCCCCCccEEEccCCcccccCChhHhhccCCCCCcCeEecCC
Q 048402          242 ------Q-ITDLTKVTQLLFLSVHSNNMSGP------LPLISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKD  308 (677)
Q Consensus       242 ------~-~~~~~~~~~L~~L~l~~n~~~~~------~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~  308 (677)
                            . ...+.....+....+..+.....      ......+++.+++.++.+....+      +.....++.|++.+
T Consensus       264 ~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~------~~~~~~L~~L~l~~  337 (635)
T 4g8a_A          264 EGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKD------FSYNFGWQHLELVN  337 (635)
T ss_dssp             SCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGG------GGSCCCCSEEEEES
T ss_pred             ccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccc------cccchhhhhhhccc
Confidence                  1 11222334454444444332211      11125677888888877654332      12256788888888


Q ss_pred             CCCcccCCcccccCCCCceecccCccccccCCcCcCCCCCccEEECcCCcccc--cCCccCcCCCCCCEEecCCCccccc
Q 048402          309 NSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSG--TIPVSLKNCTALESLDVGENEFVGN  386 (677)
Q Consensus       309 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~l~~n~l~~~  386 (677)
                      |.+....+   ..++.|+.+++..|.+...  .....+++|+.|++++|.+..  ..+..+..+.+|+.+++..|.... 
T Consensus       338 ~~~~~~~~---~~l~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-  411 (635)
T 4g8a_A          338 CKFGQFPT---LKLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-  411 (635)
T ss_dssp             CEESSCCC---CBCTTCCEEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-
T ss_pred             ccccCcCc---ccchhhhhcccccccCCCC--cccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-
Confidence            87764433   3456778888888876633  234567888888888887753  345556678888888888887763 


Q ss_pred             CChhhhhccCCceEEEcCCCcccccCC-ccccCCCCCCEEeCCCCcCCCCcCccccccccCccccccCcccCccCCCCCC
Q 048402          387 IPTWTGERFSRMVVLILRSNNFHGPLP-TRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLD  465 (677)
Q Consensus       387 ~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~  465 (677)
                      .+..+. .+++|+.+++..++.....+ ..+..+++++.+++++|.+.+..|..+..                       
T Consensus       412 ~~~~~~-~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~-----------------------  467 (635)
T 4g8a_A          412 MSSNFL-GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG-----------------------  467 (635)
T ss_dssp             ECSCCT-TCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTT-----------------------
T ss_pred             cccccc-ccccccchhhhhcccccccccccccccccccccccccccccccccccccc-----------------------
Confidence            333333 67888888888877765443 45778888888888888887666655444                       


Q ss_pred             CcccccceeeEeecCCchhhhhhhccccEEEcccCccc-ccCCcccCCCCCCcEEeccCCcceeecccccccCCCCcEEE
Q 048402          466 GDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLT-KSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESID  544 (677)
Q Consensus       466 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  544 (677)
                                             ++.++.|++++|.+. +..|..|..+++|++|+|++|++++..|..|+++++|++|+
T Consensus       468 -----------------------~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~  524 (635)
T 4g8a_A          468 -----------------------LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN  524 (635)
T ss_dssp             -----------------------CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             -----------------------chhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEE
Confidence                                   444599999999854 46788999999999999999999999999999999999999


Q ss_pred             CCCCcccccCccccccCCCCCEEEcccCcccccCCCCC-CC-CCcCcccccCCCCCCCCCCCCCC
Q 048402          545 FSVNQLSGEIPQSMSNLMSLNHLNLSNNKLTGKIPSST-QL-QSFDASSFTGNDLCGAPLPKNCA  607 (677)
Q Consensus       545 Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~-~~-~~l~~~~~~~n~l~~~~~~~~c~  607 (677)
                      |++|++++..|..|..+++|++||+++|++++..|... .+ ..++.++++     ++|+.|+|.
T Consensus       525 Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~-----~Np~~C~C~  584 (635)
T 4g8a_A          525 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLT-----QNDFACTCE  584 (635)
T ss_dssp             CTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECT-----TCCBCCSGG
T ss_pred             CCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEee-----CCCCcccCC
Confidence            99999999999999999999999999999999888752 22 456666554     568888885

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=6.3e-45  Score=409.07  Aligned_cols=386  Identities=17%  Similarity=0.233  Sum_probs=225.7

Q ss_pred             ccEEEccc--CcCccccccccCCCCCCCEEECcCCcccc-----------------CCCcCCC--CCCCCCEEEcccccc
Q 048402           83 LESLDLRS--SSISGHLTDQLGQFKNLDNLDLANNSIVG-----------------PIPQSLG--HLSNLRVLQIYNNKL  141 (677)
Q Consensus        83 L~~L~L~~--n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-----------------~~~~~~~--~l~~L~~L~L~~n~i  141 (677)
                      ++.+.+..  |.+++ +|..|+++++|++|+|++|.+++                 .+|..++  ++++|++|++++|.+
T Consensus       425 l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l  503 (876)
T 4ecn_A          425 LKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPN  503 (876)
T ss_dssp             CCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTT
T ss_pred             hhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCC
Confidence            44444443  67776 77788888888888888888886                 2788877  888888888888888


Q ss_pred             ccccChhhhhCCCCCCEEEeeccc-cce-ecCCCC-------CCCcCccEEEeecccCCCCCCh--hccCCCCCCEEEcc
Q 048402          142 NGTLSEIHFSNLTKLSWFRVGGNK-LTL-EVRHDW-------IPPFQLVALGFHNCYVGSRFPQ--WLHSQKHLQYLNLL  210 (677)
Q Consensus       142 ~~~l~~~~~~~l~~L~~L~l~~n~-l~~-~~~~~~-------~~~~~L~~L~l~~n~~~~~~~~--~~~~l~~L~~L~l~  210 (677)
                      .+.+|. .+.++++|+.|++++|. +++ ..+..+       ..+++|+.|++++|.+. .+|.  .++++++|++|+++
T Consensus       504 ~~~iP~-~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls  581 (876)
T 4ecn_A          504 MTQLPD-FLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCV  581 (876)
T ss_dssp             CCSCCG-GGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECT
T ss_pred             CccChH-HHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECC
Confidence            878886 78888888888888887 776 455433       34458999999999988 7888  89999999999999


Q ss_pred             CCCCCCccchHHHhccCCccEEECCCccCccccCCccccccccEEEcccCCCCCCCCCCCCCccEEEccCCcccccCChh
Q 048402          211 NSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNNMSGPLPLISSNLVYLDLSNNSFSGSVSHY  290 (677)
Q Consensus       211 ~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~  290 (677)
                      +|.++.+ |  .+..+++|+.|++++|.+...+..+..+++                                       
T Consensus       582 ~N~l~~l-p--~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~---------------------------------------  619 (876)
T 4ecn_A          582 HNKVRHL-E--AFGTNVKLTDLKLDYNQIEEIPEDFCAFTD---------------------------------------  619 (876)
T ss_dssp             TSCCCBC-C--CCCTTSEESEEECCSSCCSCCCTTSCEECT---------------------------------------
T ss_pred             CCCcccc-h--hhcCCCcceEEECcCCccccchHHHhhccc---------------------------------------
Confidence            9998843 4  234456666666666666532222222222                                       


Q ss_pred             HhhccCCCCCcCeEecCCCCCcccCCcccccCC--CCceecccCccccccCCcC---cC--CCCCccEEECcCCcccccC
Q 048402          291 LCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQ--NLEILELSNNKFTGKLPNS---LG--SLTSLIWLLLGKNRLSGTI  363 (677)
Q Consensus       291 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~--~L~~L~L~~n~l~~~~~~~---~~--~l~~L~~L~l~~n~~~~~~  363 (677)
                               +|+.|++++|.++ .+|..+..++  +|+.|++++|++.+.+|..   +.  .+++|+.|++++|+++...
T Consensus       620 ---------~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp  689 (876)
T 4ecn_A          620 ---------QVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFP  689 (876)
T ss_dssp             ---------TCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCC
T ss_pred             ---------cCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccC
Confidence                     0333333333333 2333333222  2444444444444332211   11  2235555555555555222


Q ss_pred             CccCcCCCCCCEEecCCCcccccCChhhhhcc-------CCceEEEcCCCcccccCCcccc--CCCCCCEEeCCCCcCCC
Q 048402          364 PVSLKNCTALESLDVGENEFVGNIPTWTGERF-------SRMVVLILRSNNFHGPLPTRLC--DLAFLQILDLADNNLFG  434 (677)
Q Consensus       364 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l-------~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~  434 (677)
                      +..+..+++|+.|++++|.+. .+|...+...       ++|+.|+|++|+++ .+|..+.  .+++|+.|++++|++.+
T Consensus       690 ~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~  767 (876)
T 4ecn_A          690 TELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS  767 (876)
T ss_dssp             HHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS
T ss_pred             HHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc
Confidence            222335555555555555555 4554443211       25555555555555 4444444  55555555555555554


Q ss_pred             CcCccccccccCccccccCcccCccCCCCCCCcccccceeeEeecCCchhhhhhhccccEEEccc------CcccccCCc
Q 048402          435 TIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSR------NNLTKSIPL  508 (677)
Q Consensus       435 ~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~------n~l~~~~~~  508 (677)
                       +|..+.++++|                                              +.|+|++      |++.+.+|.
T Consensus       768 -lp~~l~~L~~L----------------------------------------------~~L~Ls~N~~ls~N~l~~~ip~  800 (876)
T 4ecn_A          768 -FPTQPLNSSQL----------------------------------------------KAFGIRHQRDAEGNRILRQWPT  800 (876)
T ss_dssp             -CCCGGGGCTTC----------------------------------------------CEEECCCCBCTTCCBCCCCCCT
T ss_pred             -cchhhhcCCCC----------------------------------------------CEEECCCCCCcccccccccChH
Confidence             44444333332                                              4454443      555555666


Q ss_pred             ccCCCCCCcEEeccCCcceeecccccccCCCCcEEECCCCcccccCccccccCCCCCEEEcccCccc
Q 048402          509 EMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLSNNKLT  575 (677)
Q Consensus       509 ~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~  575 (677)
                      .+.++++|+.|+|++|++ +.+|..+.  ++|+.|+|++|++....+..+.....+..+.+.+|++.
T Consensus       801 ~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~  864 (876)
T 4ecn_A          801 GITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ  864 (876)
T ss_dssp             TGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTS
T ss_pred             HHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCcc
Confidence            666666666666666666 35555544  46666666666665555555544444445555555443

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=3.6e-44  Score=390.25  Aligned_cols=442  Identities=18%  Similarity=0.168  Sum_probs=287.8

Q ss_pred             CcccEEEccCCCCceecCCccccCCCCCCEEecCCCCCCCccCchhhcCCCCCCEEEccCCcCCcccchhhhhccccCcC
Q 048402            2 IHLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVSI   81 (677)
Q Consensus         2 ~~L~~L~Ls~n~~~~~i~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~   81 (677)
                      ++|++|+|++|.++ .+++..|.++++|++|+++ ++.+.+..|.+|.++++|++|++++|.+++ +|..  .++     
T Consensus        21 ~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls-~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~--~l~-----   90 (520)
T 2z7x_B           21 QKTTILNISQNYIS-ELWTSDILSLSKLRILIIS-HNRIQYLDISVFKFNQELEYLDLSHNKLVK-ISCH--PTV-----   90 (520)
T ss_dssp             TTCSEEECCSSCCC-CCCHHHHTTCTTCCEEECC-SSCCCEEEGGGGTTCTTCCEEECCSSCCCE-EECC--CCC-----
T ss_pred             ccccEEECCCCccc-ccChhhccccccccEEecC-CCccCCcChHHhhcccCCCEEecCCCceee-cCcc--ccC-----
Confidence            57999999999998 5547889999999999999 788888889999999999999999999995 4544  667     


Q ss_pred             CccEEEcccCcCcc-ccccccCCCCCCCEEECcCCccccCCCcCCCCCCCC--CEEEcccccc--ccccChhhhhCCC-C
Q 048402           82 ELESLDLRSSSISG-HLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNL--RVLQIYNNKL--NGTLSEIHFSNLT-K  155 (677)
Q Consensus        82 ~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L--~~L~L~~n~i--~~~l~~~~~~~l~-~  155 (677)
                      +|++|++++|.+++ .+|..|+++++|++|++++|.+++   ..+..+++|  ++|++++|.+  .+..|. .+..+. +
T Consensus        91 ~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~-~l~~l~~~  166 (520)
T 2z7x_B           91 NLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPE-GLQDFNTE  166 (520)
T ss_dssp             CCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTT-TTTTCCEE
T ss_pred             CccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccc-cccccccc
Confidence            99999999999997 478899999999999999999985   467778888  9999999999  666665 566655 2


Q ss_pred             CCEEEeeccccceecC-CCCCCCcCccEEEeeccc-------CCCCCChhccCCCCCCEEEccCCCCCCccchHHHh--c
Q 048402          156 LSWFRVGGNKLTLEVR-HDWIPPFQLVALGFHNCY-------VGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLK--S  225 (677)
Q Consensus       156 L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~l~~n~-------~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~--~  225 (677)
                      ...+++++|.+.+..+ ..+..+++|+.+++++|.       +.+.+| .+..+++|+.|++++|.+++.....+..  .
T Consensus       167 ~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~  245 (520)
T 2z7x_B          167 SLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVW  245 (520)
T ss_dssp             EEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHH
T ss_pred             eEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhh
Confidence            3356677777665333 355667777888777775       333333 5666777777777776665433222211  1


Q ss_pred             cCCccEEECCCccCccccCCccccccccEEEcccCCCCCCCCCCCCCccEEEccCCcccccCChhHhhccCCCCCcCeEe
Q 048402          226 AFQLKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNNMSGPLPLISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLK  305 (677)
Q Consensus       226 ~~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~  305 (677)
                      .++|++|++++|.+.+.++......               ....+++|+.+++++|.+  .+|.                
T Consensus       246 ~~~L~~L~l~~n~l~~~~p~~~~~~---------------~~~~l~~L~~l~l~~n~~--~~p~----------------  292 (520)
T 2z7x_B          246 HTTVWYFSISNVKLQGQLDFRDFDY---------------SGTSLKALSIHQVVSDVF--GFPQ----------------  292 (520)
T ss_dssp             TSSCSEEEEEEEEEESCCCCCCCCC---------------CSCCCCEEEEEEEEECCC--CSCT----------------
T ss_pred             hCcccEEEeecccccCccccchhhc---------------ccccCceeEeccccccce--ecch----------------
Confidence            2355555555555543332211000               001122333344444433  1221                


Q ss_pred             cCCCCCcccCCcccccC---CCCceecccCccccccCCcCcCCCCCccEEECcCCcccccCCccCcCCCCCCEEecCCCc
Q 048402          306 LKDNSLQGEIPDCWMSY---QNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENE  382 (677)
Q Consensus       306 l~~n~l~~~~~~~~~~l---~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~  382 (677)
                                 ..+..+   .+|+.|++++|.+....  .+..+++|++|++++|++++..|..+..+++|++|++++|+
T Consensus       293 -----------~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~  359 (520)
T 2z7x_B          293 -----------SYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQ  359 (520)
T ss_dssp             -----------HHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSC
T ss_pred             -----------hhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCc
Confidence                       122221   33444444444443211  11344455555555555554445555555555555555555


Q ss_pred             ccc--cCChhhhhccCCceEEEcCCCcccccCCc-cccCCCCCCEEeCCCCcCCCCcCccccccccCccccccCcccCcc
Q 048402          383 FVG--NIPTWTGERFSRMVVLILRSNNFHGPLPT-RLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQY  459 (677)
Q Consensus       383 l~~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~  459 (677)
                      +.+  .+|..+. .+++|++|++++|.+++.+|. .+..+++|++|++++|++++..|..+.                  
T Consensus       360 l~~l~~~~~~~~-~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~------------------  420 (520)
T 2z7x_B          360 LKELSKIAEMTT-QMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP------------------  420 (520)
T ss_dssp             CCBHHHHHHHHT-TCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC------------------
T ss_pred             cCccccchHHHh-hCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc------------------
Confidence            542  2222222 455666666666666553333 356667777777777777655443221                  


Q ss_pred             CCCCCCCcccccceeeEeecCCchhhhhhhccccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeecccc-cccCC
Q 048402          460 LPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPES-IGAMR  538 (677)
Q Consensus       460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~-~~~l~  538 (677)
                                                    ++|+.|++++|+++ .+|..+..+++|++|++++|+++ .+|.. |..++
T Consensus       421 ------------------------------~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~  468 (520)
T 2z7x_B          421 ------------------------------PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLT  468 (520)
T ss_dssp             ------------------------------TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCT
T ss_pred             ------------------------------ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCC
Confidence                                          24578888888887 67777778999999999999998 45554 88999


Q ss_pred             CCcEEECCCCcccccCc
Q 048402          539 SLESIDFSVNQLSGEIP  555 (677)
Q Consensus       539 ~L~~L~Ls~N~l~~~~p  555 (677)
                      +|++|++++|++++..+
T Consensus       469 ~L~~L~l~~N~~~c~c~  485 (520)
T 2z7x_B          469 SLQKIWLHTNPWDCSCP  485 (520)
T ss_dssp             TCCEEECCSSCBCCCHH
T ss_pred             cccEEECcCCCCcccCC
Confidence            99999999999986543

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=3e-44  Score=394.05  Aligned_cols=465  Identities=19%  Similarity=0.219  Sum_probs=313.1

Q ss_pred             cCCCCCCEEecCCCCCCCccCchhhcCCCCCCEEEccCCcCCcccchhhhhccccCcCCccEEEcccCcCccccccccCC
Q 048402           24 GNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQ  103 (677)
Q Consensus        24 ~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~  103 (677)
                      ..+...++++++ ++.+++ +|..+.  ++|++|++++|.+++..+..+..++     +|++|++++|.+++..|+.|.+
T Consensus        28 ~~~~~~~~l~ls-~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~-----~L~~L~Ls~N~l~~~~~~~~~~   98 (562)
T 3a79_B           28 FSNELESMVDYS-NRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLS-----ELRVLRLSHNRIRSLDFHVFLF   98 (562)
T ss_dssp             -----CCEEECT-TSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCT-----TCCEEECCSCCCCEECTTTTTT
T ss_pred             cccCCCcEEEcC-CCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCC-----CccEEECCCCCCCcCCHHHhCC
Confidence            345556788888 666664 565543  6788888888888877777788777     8888888888888777778888


Q ss_pred             CCCCCEEECcCCccccCCCcCCCCCCCCCEEEcccccccc-ccChhhhhCCCCCCEEEeeccccceecCCCCCCCcCc--
Q 048402          104 FKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNG-TLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQL--  180 (677)
Q Consensus       104 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~-~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L--  180 (677)
                      +++|++|++++|.++ .+|..  .+++|++|++++|.+++ .+|. .|+++++|++|++++|.++.   ..+..+.++  
T Consensus        99 l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~-~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L  171 (562)
T 3a79_B           99 NQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCK-EFGNLTKLTFLGLSAAKFRQ---LDLLPVAHLHL  171 (562)
T ss_dssp             CTTCCEEECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCG-GGGGCTTCCEEEEECSBCCT---TTTGGGTTSCE
T ss_pred             CCCCCEEECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchH-hhcccCcccEEecCCCcccc---Cchhhhhhcee
Confidence            888888888888887 45555  78888888888888873 2233 68888888888888887764   234444444  


Q ss_pred             cEEEeecccC--CCCCChhccCCC-CCCEEEccCCCCCCccchHHHhccCCccEEECCCcc-----CccccCCccccccc
Q 048402          181 VALGFHNCYV--GSRFPQWLHSQK-HLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQ-----FHGQITDLTKVTQL  252 (677)
Q Consensus       181 ~~L~l~~n~~--~~~~~~~~~~l~-~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~-----l~~~~~~~~~~~~L  252 (677)
                      +.|++++|.+  .+..|..+..+. ..-.+++++|.+.+..+......+++|+.+++++|.     +.+.++.+...++ 
T Consensus       172 ~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~-  250 (562)
T 3a79_B          172 SCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPT-  250 (562)
T ss_dssp             EEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSS-
T ss_pred             eEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCc-
Confidence            7777777777  666666666543 111445666666554444334445566666666653     1222222333334 


Q ss_pred             cEEEcccCCCCCCCCCCCCCccEEEccCCcccccCChhHhhccCCCCCcCeEecCCCCCcccCCccc-----ccCCCCce
Q 048402          253 LFLSVHSNNMSGPLPLISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCW-----MSYQNLEI  327 (677)
Q Consensus       253 ~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~  327 (677)
                                          ++.++++++.+.+.....+...+. .++|++|++++|.+.+.+|..+     ..++.|+.
T Consensus       251 --------------------L~~L~L~~~~l~~~~~~~~~~~~~-~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~  309 (562)
T 3a79_B          251 --------------------LLNVTLQHIETTWKCSVKLFQFFW-PRPVEYLNIYNLTITERIDREEFTYSETALKSLMI  309 (562)
T ss_dssp             --------------------CEEEEEEEEEECHHHHHHHHHHHT-TSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEE
T ss_pred             --------------------ceEEEecCCcCcHHHHHHHHHhhh-cccccEEEEeccEeeccccchhhhcccccchheeh
Confidence                                444444444433221111111111 3467777777777776666665     55555555


Q ss_pred             ecccCccccccCC-cCcCC---CCCccEEECcCCcccccCCccCcCCCCCCEEecCCCcccccCChhhhhccCCceEEEc
Q 048402          328 LELSNNKFTGKLP-NSLGS---LTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLIL  403 (677)
Q Consensus       328 L~L~~n~l~~~~~-~~~~~---l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L  403 (677)
                      ++++.+.+  .+| ..+..   ..+|+.|++++|.+....  ....+++|++|++++|.+.+.+|..+. .+++|++|++
T Consensus       310 ~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L  384 (562)
T 3a79_B          310 EHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCS-TLKRLQTLIL  384 (562)
T ss_dssp             EEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCC-SCSSCCEEEC
T ss_pred             hhccccee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhc-ccCCCCEEEC
Confidence            55555555  233 11111   246778888888775322  125677888888888888766666554 6788888888


Q ss_pred             CCCccccc--CCccccCCCCCCEEeCCCCcCCCCcCcc-ccccccCccccccCcccCccCCCCCCCcccccceeeEeecC
Q 048402          404 RSNNFHGP--LPTRLCDLAFLQILDLADNNLFGTIPKC-INNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEG  480 (677)
Q Consensus       404 ~~n~l~~~--~~~~~~~l~~L~~L~Ls~n~l~~~~p~~-~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  480 (677)
                      ++|++++.  +|..+..+++|++|++++|++.+.+|.. +..                                      
T Consensus       385 ~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~--------------------------------------  426 (562)
T 3a79_B          385 QRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAW--------------------------------------  426 (562)
T ss_dssp             CSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCC--------------------------------------
T ss_pred             CCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcC--------------------------------------
Confidence            88888752  3456788888888888888887655542 333                                      


Q ss_pred             CchhhhhhhccccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeecccccccCCCCcEEECCCCcccccCccc-cc
Q 048402          481 EAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQS-MS  559 (677)
Q Consensus       481 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-l~  559 (677)
                              +++|+.|++++|++++..|..+.  ++|++|++++|+++ .+|..+.++++|++|++++|+++ .+|.. +.
T Consensus       427 --------l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~  494 (562)
T 3a79_B          427 --------AESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFD  494 (562)
T ss_dssp             --------CTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTT
T ss_pred             --------cccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHh
Confidence                    34458899999998877776654  78999999999999 78877779999999999999999 55655 89


Q ss_pred             cCCCCCEEEcccCcccccCCCC
Q 048402          560 NLMSLNHLNLSNNKLTGKIPSS  581 (677)
Q Consensus       560 ~l~~L~~L~ls~N~l~~~~p~~  581 (677)
                      .+++|+.|++++|++.|.+|..
T Consensus       495 ~l~~L~~L~l~~N~~~c~c~~~  516 (562)
T 3a79_B          495 RLTSLQYIWLHDNPWDCTCPGI  516 (562)
T ss_dssp             TCTTCCCEECCSCCBCCCHHHH
T ss_pred             cCCCCCEEEecCCCcCCCcchH
Confidence            9999999999999999988753

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=1.6e-42  Score=389.56  Aligned_cols=360  Identities=20%  Similarity=0.268  Sum_probs=270.2

Q ss_pred             cccccccChhhhhCCCCCCEEEeecccccee-----------------cCCCCC--CCcCccEEEeecccCCCCCChhcc
Q 048402          139 NKLNGTLSEIHFSNLTKLSWFRVGGNKLTLE-----------------VRHDWI--PPFQLVALGFHNCYVGSRFPQWLH  199 (677)
Q Consensus       139 n~i~~~l~~~~~~~l~~L~~L~l~~n~l~~~-----------------~~~~~~--~~~~L~~L~l~~n~~~~~~~~~~~  199 (677)
                      |.+++ +|. .++++++|+.|++++|.+++.                 .+..+.  .+++|+.|++++|.+.+.+|..++
T Consensus       435 N~L~~-IP~-~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~  512 (876)
T 4ecn_A          435 NRITF-ISK-AIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLY  512 (876)
T ss_dssp             CEEEE-ECG-GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGG
T ss_pred             Ccccc-hhH-HHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHh
Confidence            67775 776 688888888888888888772                 455544  666666666666666666666666


Q ss_pred             CCCCCCEEEccCCC-CCC-ccchHHHhccCCccEEECCCccCccccCCccccccccEEEcccCCCCCCCCC-----CCCC
Q 048402          200 SQKHLQYLNLLNSG-MSD-LFPIRFLKSAFQLKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNNMSGPLPL-----ISSN  272 (677)
Q Consensus       200 ~l~~L~~L~l~~n~-i~~-~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-----~~~~  272 (677)
                      ++++|++|++++|+ +++ ..|..+.. ++                ..+..+++|+.|++++|.+. .+|.     .+++
T Consensus       513 ~L~~L~~L~Ls~N~~lsg~~iP~~i~~-L~----------------~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~  574 (876)
T 4ecn_A          513 DLPELQSLNIACNRGISAAQLKADWTR-LA----------------DDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVK  574 (876)
T ss_dssp             GCSSCCEEECTTCTTSCHHHHHHHHHH-HH----------------HCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTT
T ss_pred             CCCCCCEEECcCCCCcccccchHHHHh-hh----------------hcccccCCccEEEeeCCcCC-ccCChhhhhcCCC
Confidence            66666777766665 655 44444322 11                01111234444444444444 3332     2456


Q ss_pred             ccEEEccCCcccccCChhHhhccCCCCCcCeEecCCCCCcccCCcccccCCC-CceecccCccccccCCcCcCCCCC--c
Q 048402          273 LVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQN-LEILELSNNKFTGKLPNSLGSLTS--L  349 (677)
Q Consensus       273 L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~~--L  349 (677)
                      |+.|++++|.++ .+|     .+..+++|+.|++++|.+. .+|..+..+++ |+.|++++|.++ .+|..+..++.  |
T Consensus       575 L~~L~Ls~N~l~-~lp-----~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L  646 (876)
T 4ecn_A          575 LGLLDCVHNKVR-HLE-----AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVM  646 (876)
T ss_dssp             CCEEECTTSCCC-BCC-----CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCE
T ss_pred             CCEEECCCCCcc-cch-----hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCC
Confidence            677777777766 444     3455889999999999998 88888999999 999999999999 78888877654  9


Q ss_pred             cEEECcCCcccccCCccC---c--CCCCCCEEecCCCcccccCChhhhhccCCceEEEcCCCcccccCCccccC------
Q 048402          350 IWLLLGKNRLSGTIPVSL---K--NCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCD------  418 (677)
Q Consensus       350 ~~L~l~~n~~~~~~~~~~---~--~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~------  418 (677)
                      +.|++++|++.+.+|...   .  .+++|+.|++++|.+. .+|..++..+++|+.|++++|+++ .+|..+..      
T Consensus       647 ~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l  724 (876)
T 4ecn_A          647 GSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNY  724 (876)
T ss_dssp             EEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCC
T ss_pred             CEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccc
Confidence            999999999987665322   2  3458999999999998 889888878999999999999999 55554333      


Q ss_pred             --CCCCCEEeCCCCcCCCCcCcccc--ccccCccccccCcccCccCCCCCCCcccccceeeEeecCCchhhhhhhccccE
Q 048402          419 --LAFLQILDLADNNLFGTIPKCIN--NITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKE  494 (677)
Q Consensus       419 --l~~L~~L~Ls~n~l~~~~p~~~~--~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~  494 (677)
                        +++|+.|++++|+++ .+|..+.  .                                              +++|+.
T Consensus       725 ~nl~~L~~L~Ls~N~L~-~lp~~l~~~~----------------------------------------------l~~L~~  757 (876)
T 4ecn_A          725 KNTYLLTTIDLRFNKLT-SLSDDFRATT----------------------------------------------LPYLSN  757 (876)
T ss_dssp             TTGGGCCEEECCSSCCC-CCCGGGSTTT----------------------------------------------CTTCCE
T ss_pred             cccCCccEEECCCCCCc-cchHHhhhcc----------------------------------------------CCCcCE
Confidence              238999999999998 6666543  3                                              445699


Q ss_pred             EEcccCcccccCCcccCCCCCCcEEeccC------CcceeecccccccCCCCcEEECCCCcccccCccccccCCCCCEEE
Q 048402          495 TDVSRNNLTKSIPLEMTNLKATQSLNFSH------NSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLN  568 (677)
Q Consensus       495 L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~------n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  568 (677)
                      |+|++|++++ +|..+..+++|+.|+|++      |++.+.+|..|.++++|+.|+|++|++ +.+|..+.  ++|+.||
T Consensus       758 L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~Ld  833 (876)
T 4ecn_A          758 MDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILD  833 (876)
T ss_dssp             EECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEE
T ss_pred             EEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEE
Confidence            9999999997 788899999999999976      788889999999999999999999999 58888766  6999999


Q ss_pred             cccCcccccCC
Q 048402          569 LSNNKLTGKIP  579 (677)
Q Consensus       569 ls~N~l~~~~p  579 (677)
                      +++|++...-+
T Consensus       834 Ls~N~l~~i~~  844 (876)
T 4ecn_A          834 IADNPNISIDV  844 (876)
T ss_dssp             CCSCTTCEEEC
T ss_pred             CCCCCCCccCh
Confidence            99999875443

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=4.2e-41  Score=369.00  Aligned_cols=456  Identities=18%  Similarity=0.205  Sum_probs=313.1

Q ss_pred             cccEEEccCCCCceecCCccccCCCCCCEEecCCCCCCCccCchhhcCCCCCCEEEccCCcCCcccchhhhhccccCcCC
Q 048402            3 HLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVSIE   82 (677)
Q Consensus         3 ~L~~L~Ls~n~~~~~i~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~   82 (677)
                      ..+++++++|.++ .+ |..+.  ++|++|+++ ++.+.+..+.+|.++++|++|++++|.+++..|..|..++     +
T Consensus        32 ~~~~l~ls~~~L~-~i-p~~~~--~~L~~L~Ls-~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-----~  101 (562)
T 3a79_B           32 LESMVDYSNRNLT-HV-PKDLP--PRTKALSLS-QNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQ-----D  101 (562)
T ss_dssp             -CCEEECTTSCCC-SC-CTTSC--TTCCEEECC-SSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCT-----T
T ss_pred             CCcEEEcCCCCCc-cC-CCCCC--CCcCEEECC-CCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCC-----C
Confidence            4478999999998 67 54443  899999999 7888888888999999999999999999998899999999     9


Q ss_pred             ccEEEcccCcCccccccccCCCCCCCEEECcCCccccC-CCcCCCCCCCCCEEEccccccccccChhhhhCCCCC--CEE
Q 048402           83 LESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGP-IPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKL--SWF  159 (677)
Q Consensus        83 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~i~~~l~~~~~~~l~~L--~~L  159 (677)
                      |++|++++|.++. +|..  .+++|++|++++|.+++. .|..|+++++|++|++++|.+++ .   .+..+++|  +.|
T Consensus       102 L~~L~Ls~N~l~~-lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~-~---~~~~l~~L~L~~L  174 (562)
T 3a79_B          102 LEYLDVSHNRLQN-ISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ-L---DLLPVAHLHLSCI  174 (562)
T ss_dssp             CCEEECTTSCCCE-ECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT-T---TTGGGTTSCEEEE
T ss_pred             CCEEECCCCcCCc-cCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc-C---chhhhhhceeeEE
Confidence            9999999999994 5655  899999999999999863 46899999999999999999974 2   45566666  999


Q ss_pred             Eeecccc--ceecCCCCCCCc-CccEEEeecccCCCCCCh-hccCCCCCCEEEccCCCCCCc-cc--hHHHhccCCccEE
Q 048402          160 RVGGNKL--TLEVRHDWIPPF-QLVALGFHNCYVGSRFPQ-WLHSQKHLQYLNLLNSGMSDL-FP--IRFLKSAFQLKFL  232 (677)
Q Consensus       160 ~l~~n~l--~~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~-~~~~l~~L~~L~l~~n~i~~~-~~--~~~~~~~~~L~~L  232 (677)
                      ++++|.+  ++..+..+..+. ....+++++|.+.+.++. .+..+++|+.+++++|..... .+  ...+..+++++.+
T Consensus       175 ~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L  254 (562)
T 3a79_B          175 LLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNV  254 (562)
T ss_dssp             EEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEE
T ss_pred             EeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEE
Confidence            9999998  766666665543 233567788887765554 356788999999999863210 01  1123557788888


Q ss_pred             ECCCccCcccc----CCccccccccEEEcccCCCCCCCCCCC-----CCccEEEccCCcccccCChhHhhccCCCCCcCe
Q 048402          233 DLGLNQFHGQI----TDLTKVTQLLFLSVHSNNMSGPLPLIS-----SNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIG  303 (677)
Q Consensus       233 ~Ls~n~l~~~~----~~~~~~~~L~~L~l~~n~~~~~~~~~~-----~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~  303 (677)
                      +++.+.+.+..    +.....++|+.|++++|.+.+.+|...     ++++.|.+.+                       
T Consensus       255 ~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~-----------------------  311 (562)
T 3a79_B          255 TLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEH-----------------------  311 (562)
T ss_dssp             EEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEE-----------------------
T ss_pred             EecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhh-----------------------
Confidence            88877665421    111222467777777777766555443     3444333332                       


Q ss_pred             EecCCCCCcccCC-ccccc---CCCCceecccCccccccCCcCcCCCCCccEEECcCCcccccCCccCcCCCCCCEEecC
Q 048402          304 LKLKDNSLQGEIP-DCWMS---YQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVG  379 (677)
Q Consensus       304 L~l~~n~l~~~~~-~~~~~---l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~  379 (677)
                        +..+.+  .+| ..+..   ..+|++|++++|.+....  ....+++|++|++++|++++..|..+.++++|++|+++
T Consensus       312 --~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~  385 (562)
T 3a79_B          312 --VKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQ  385 (562)
T ss_dssp             --EEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECC
T ss_pred             --ccccee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECC
Confidence              222222  111 11111   134555555555543211  11445556666666666655555555566666666666


Q ss_pred             CCcccccCCh--hhhhccCCceEEEcCCCcccccCC-ccccCCCCCCEEeCCCCcCCCCcCccccccccCccccccCccc
Q 048402          380 ENEFVGNIPT--WTGERFSRMVVLILRSNNFHGPLP-TRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSS  456 (677)
Q Consensus       380 ~n~l~~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~  456 (677)
                      +|++.+ ++.  ..+..+++|++|++++|.+++.+| ..+..+++|++|++++|++++.+|..+.               
T Consensus       386 ~N~l~~-~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~---------------  449 (562)
T 3a79_B          386 RNGLKN-FFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP---------------  449 (562)
T ss_dssp             SSCCCB-TTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC---------------
T ss_pred             CCCcCC-cccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc---------------
Confidence            665552 221  112245666666666666665333 3466677777777777777655443221               


Q ss_pred             CccCCCCCCCcccccceeeEeecCCchhhhhhhccccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeecccc-cc
Q 048402          457 QQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPES-IG  535 (677)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~-~~  535 (677)
                                                       ++|+.|++++|+++ .+|..+.++++|++|++++|+++ .+|.. +.
T Consensus       450 ---------------------------------~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~  494 (562)
T 3a79_B          450 ---------------------------------PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFD  494 (562)
T ss_dssp             ---------------------------------TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTT
T ss_pred             ---------------------------------CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHh
Confidence                                             24578888888887 56766779999999999999999 56655 89


Q ss_pred             cCCCCcEEECCCCcccccCc
Q 048402          536 AMRSLESIDFSVNQLSGEIP  555 (677)
Q Consensus       536 ~l~~L~~L~Ls~N~l~~~~p  555 (677)
                      .+++|+.|++++|++.+..|
T Consensus       495 ~l~~L~~L~l~~N~~~c~c~  514 (562)
T 3a79_B          495 RLTSLQYIWLHDNPWDCTCP  514 (562)
T ss_dssp             TCTTCCCEECCSCCBCCCHH
T ss_pred             cCCCCCEEEecCCCcCCCcc
Confidence            99999999999999986544

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=1.1e-39  Score=348.80  Aligned_cols=371  Identities=19%  Similarity=0.207  Sum_probs=239.5

Q ss_pred             CCCCEEECcCCccccCCCcCCCCCCCCCEEEccccccccccChhhhhCCCCCCEEEeeccccceecCCCCCCCcCccEEE
Q 048402          105 KNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQLVALG  184 (677)
Q Consensus       105 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~  184 (677)
                      ++|++|++++|.+++..|..|.++++|++|++++|.+.+.++...|.++++|++|++++|.+++..+..+..+++|++|+
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  109 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT  109 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred             CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence            45555555555555444555555555555555555554444444455555555555555555444444444444444444


Q ss_pred             eecccCCCCCCh--hccCCCCCCEEEccCCCCCCccchHHHhccCCccEEECCCccCccccCCccccccccEEEcccCCC
Q 048402          185 FHNCYVGSRFPQ--WLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNNM  262 (677)
Q Consensus       185 l~~n~~~~~~~~--~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~l~~n~~  262 (677)
                      +++|.+.+..+.  .+..+++|++|++++|.+++..|..++..+++|++|++++|.+.+..+                  
T Consensus       110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~------------------  171 (455)
T 3v47_A          110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICE------------------  171 (455)
T ss_dssp             CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCT------------------
T ss_pred             CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccCh------------------
Confidence            444444332222  255566666666666666555454434444555555555544433221                  


Q ss_pred             CCCCCCCCCCccEEEccCCcccccCChhHhhccCCCCCcCeEecCCCCCcccCCcc--------cccCCCCceecccCcc
Q 048402          263 SGPLPLISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDC--------WMSYQNLEILELSNNK  334 (677)
Q Consensus       263 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~--------~~~l~~L~~L~L~~n~  334 (677)
                                                ..+.. + ....++.|++++|.+.+..+..        +..+++|++|++++|.
T Consensus       172 --------------------------~~l~~-l-~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~  223 (455)
T 3v47_A          172 --------------------------EDLLN-F-QGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNG  223 (455)
T ss_dssp             --------------------------TTSGG-G-TTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSC
T ss_pred             --------------------------hhhhc-c-ccccccccccccCcccccchhhccccccccccccceeeeEecCCCc
Confidence                                      11110 0 0245667777777766544332        2244667777777777


Q ss_pred             ccccCCcCcCCC---CCccEEECcCCcccccCCccCcCCCCCCEEecCCCcccccCChhh-hhccCCceEEEcCCCcccc
Q 048402          335 FTGKLPNSLGSL---TSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWT-GERFSRMVVLILRSNNFHG  410 (677)
Q Consensus       335 l~~~~~~~~~~l---~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~l~~L~~L~L~~n~l~~  410 (677)
                      +++..|..+...   ++|+.|++++|...+...              ..+.+.+..+..+ ....++|++|++++|.+.+
T Consensus       224 l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~  289 (455)
T 3v47_A          224 FKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF--------------GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFA  289 (455)
T ss_dssp             CCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCT--------------TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCE
T ss_pred             ccccchhhhhccccccceeeEeecccccccccc--------------chhhhccCcccccccccccCceEEEecCccccc
Confidence            766555544332   566677776665543211              0111111111111 1124789999999999998


Q ss_pred             cCCccccCCCCCCEEeCCCCcCCCCcCccccccccCccccccCcccCccCCCCCCCcccccceeeEeecCCchhhhhhhc
Q 048402          411 PLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILN  490 (677)
Q Consensus       411 ~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  490 (677)
                      ..|..+..+++|++|++++|++.+..|..+.++++                                             
T Consensus       290 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~---------------------------------------------  324 (455)
T 3v47_A          290 LLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTH---------------------------------------------  324 (455)
T ss_dssp             ECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTT---------------------------------------------
T ss_pred             cchhhcccCCCCCEEECCCCcccccChhHhcCccc---------------------------------------------
Confidence            88999999999999999999998777766665544                                             


Q ss_pred             cccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeecccccccCCCCcEEECCCCcccccCccccccCCCCCEEEcc
Q 048402          491 LVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLS  570 (677)
Q Consensus       491 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls  570 (677)
                       |++|++++|.+++..|..+.++++|++|++++|++++..|..|.++++|++|++++|++++..+..+..+++|++|+++
T Consensus       325 -L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~  403 (455)
T 3v47_A          325 -LLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLH  403 (455)
T ss_dssp             -CCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred             -CCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEcc
Confidence             4999999999998889999999999999999999998889999999999999999999997777788999999999999


Q ss_pred             cCcccccCCCC
Q 048402          571 NNKLTGKIPSS  581 (677)
Q Consensus       571 ~N~l~~~~p~~  581 (677)
                      +|++.|.+|..
T Consensus       404 ~N~l~~~~~~~  414 (455)
T 3v47_A          404 TNPWDCSCPRI  414 (455)
T ss_dssp             SSCBCCCTTTT
T ss_pred             CCCcccCCCcc
Confidence            99999999964

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=4.6e-39  Score=344.11  Aligned_cols=386  Identities=19%  Similarity=0.191  Sum_probs=292.6

Q ss_pred             cEEEccCCCCceecCCccccCCCCCCEEecCCCCCCCccCchhhcCCCCCCEEEccCCcCCccc-chhhhhccccCcCCc
Q 048402            5 EYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEI-SEILNIFSGCVSIEL   83 (677)
Q Consensus         5 ~~L~Ls~n~~~~~i~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~~~~~~L   83 (677)
                      +.++.+++.++ .+ |. +  .++|++|+|+ ++.+.+..|..|.++++|++|++++|.+.+.+ +..+..++     +|
T Consensus        13 ~~~~c~~~~l~-~l-p~-l--~~~l~~L~Ls-~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~-----~L   81 (455)
T 3v47_A           13 YNAICINRGLH-QV-PE-L--PAHVNYVDLS-LNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLS-----SL   81 (455)
T ss_dssp             TEEECCSSCCS-SC-CC-C--CTTCCEEECC-SSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCT-----TC
T ss_pred             cccCcCCCCcc-cC-CC-C--CCccCEEEec-CCccCcCChhHhccCccccEEECcCCcccceECcccccccc-----cC
Confidence            45677777777 66 33 2  3789999998 77778777888999999999999999887554 56788888     89


Q ss_pred             cEEEcccCcCccccccccCCCCCCCEEECcCCccccCCCcC--CCCCCCCCEEEccccccccccChhhhhCCCCCCEEEe
Q 048402           84 ESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQS--LGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRV  161 (677)
Q Consensus        84 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~L~~n~i~~~l~~~~~~~l~~L~~L~l  161 (677)
                      ++|++++|.+++..|..|.++++|++|++++|.+++..+..  +..+++|++|++++|.+++..|...+.++++|++|++
T Consensus        82 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L  161 (455)
T 3v47_A           82 IILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDL  161 (455)
T ss_dssp             CEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEEC
T ss_pred             CEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeC
Confidence            99999999998888888999999999999999888644444  8889999999999999886656645888899999999


Q ss_pred             eccccceecCCCCCCC--cCccEEEeecccCCCCCChhc--------cCCCCCCEEEccCCCCCCccchHHHhc--cCCc
Q 048402          162 GGNKLTLEVRHDWIPP--FQLVALGFHNCYVGSRFPQWL--------HSQKHLQYLNLLNSGMSDLFPIRFLKS--AFQL  229 (677)
Q Consensus       162 ~~n~l~~~~~~~~~~~--~~L~~L~l~~n~~~~~~~~~~--------~~l~~L~~L~l~~n~i~~~~~~~~~~~--~~~L  229 (677)
                      ++|.+.+..+..+...  .+++.+++++|.+....+.++        ..+++|++|++++|.+++..+..+...  .+++
T Consensus       162 ~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L  241 (455)
T 3v47_A          162 TFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKI  241 (455)
T ss_dssp             TTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCE
T ss_pred             CCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccce
Confidence            9998887777766554  577888888877766554432        245667777777777766655555432  1456


Q ss_pred             cEEECCCccCccccCCccccccccEEEcccCCCCCCCCCCCCCccEEEccCCcccccCChhHhhccCCCCCcCeEecCCC
Q 048402          230 KFLDLGLNQFHGQITDLTKVTQLLFLSVHSNNMSGPLPLISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDN  309 (677)
Q Consensus       230 ~~L~Ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n  309 (677)
                      +.|++++|...+...                                  ..+.+.+..+..+..  ...++|+.|++++|
T Consensus       242 ~~L~l~~~~~~~~~~----------------------------------~~~~~~~~~~~~~~~--~~~~~L~~L~l~~n  285 (455)
T 3v47_A          242 QSLILSNSYNMGSSF----------------------------------GHTNFKDPDNFTFKG--LEASGVKTCDLSKS  285 (455)
T ss_dssp             EEEECTTCTTTSCCT----------------------------------TCCSSCCCCTTTTGG--GTTSCCCEEECCSS
T ss_pred             eeEeecccccccccc----------------------------------chhhhccCccccccc--ccccCceEEEecCc
Confidence            666666554432111                                  011111111111110  11467888888888


Q ss_pred             CCcccCCcccccCCCCceecccCccccccCCcCcCCCCCccEEECcCCcccccCCccCcCCCCCCEEecCCCcccccCCh
Q 048402          310 SLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPT  389 (677)
Q Consensus       310 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  389 (677)
                      .+.+..|..|..+++|++|++++|.+.+..|..|..+++|+.|++++|++++..+..|.++++|++|++++|.+.+..|.
T Consensus       286 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~  365 (455)
T 3v47_A          286 KIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQ  365 (455)
T ss_dssp             CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTT
T ss_pred             cccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChh
Confidence            88888888888899999999999999888888888999999999999999888888888999999999999998866666


Q ss_pred             hhhhccCCceEEEcCCCcccccCCccccCCCCCCEEeCCCCcCCCCcCc
Q 048402          390 WTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPK  438 (677)
Q Consensus       390 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~  438 (677)
                      .+. .+++|++|++++|++++..+..+..+++|++|++++|++.+..|.
T Consensus       366 ~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~  413 (455)
T 3v47_A          366 SFL-GLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  413 (455)
T ss_dssp             TTT-TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             hcc-ccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence            554 689999999999999977777788999999999999999887773

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=5.5e-38  Score=332.36  Aligned_cols=399  Identities=23%  Similarity=0.264  Sum_probs=188.1

Q ss_pred             CCCCCCEEecCCCCCCCccCchhhcCCCCCCEEEccCCcCCcccchhhhhccccCcCCccEEEcccCcCccccccccCCC
Q 048402           25 NLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQF  104 (677)
Q Consensus        25 ~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l  104 (677)
                      ..++|++|+++ ++.+ +.+|.+++++++|++|++++|.+.+.+|..++.+.     +|+.++++.|..           
T Consensus         9 ~~~~L~~L~l~-~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~-----~L~~l~l~~c~~-----------   70 (454)
T 1jl5_A            9 SNTFLQEPLRH-SSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQR-----EMAVSRLRDCLD-----------   70 (454)
T ss_dssp             ---------------------------CCHHHHHHHHHHHHHTSCTTSCCCH-----HHHHHHHHHHHH-----------
T ss_pred             ccccchhhhcc-cCch-hhCChhHhcccchhhhhccCCcccccCCcccccch-----hcchhhhhhhhc-----------
Confidence            35778888887 5566 67788888888888888888887777777777666     554333333321           


Q ss_pred             CCCCEEECcCCccccCCCcCCCCCCCCCEEEccccccccccChhhhhCCCCCCEEEeeccccceecCCCCCCCcCccEEE
Q 048402          105 KNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQLVALG  184 (677)
Q Consensus       105 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~  184 (677)
                      .++++|++++|.+++ +|..   .++|++|++++|.+++ +|.    ..++|+.|++++|.+++....    .++|++|+
T Consensus        71 ~~l~~L~l~~~~l~~-lp~~---~~~L~~L~l~~n~l~~-lp~----~~~~L~~L~l~~n~l~~l~~~----~~~L~~L~  137 (454)
T 1jl5_A           71 RQAHELELNNLGLSS-LPEL---PPHLESLVASCNSLTE-LPE----LPQSLKSLLVDNNNLKALSDL----PPLLEYLG  137 (454)
T ss_dssp             HTCSEEECTTSCCSC-CCSC---CTTCSEEECCSSCCSS-CCC----CCTTCCEEECCSSCCSCCCSC----CTTCCEEE
T ss_pred             cCCCEEEecCCcccc-CCCC---cCCCCEEEccCCcCCc-ccc----ccCCCcEEECCCCccCcccCC----CCCCCEEE
Confidence            234566666666553 2321   2456666666666653 443    135566666666655542211    14666666


Q ss_pred             eecccCCCCCChhccCCCCCCEEEccCCCCCCccchHHHhccCCccEEECCCccCccccCCccccccccEEEcccCCCCC
Q 048402          185 FHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNNMSG  264 (677)
Q Consensus       185 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~  264 (677)
                      +++|.+.+ +| .++.+++|++|++++|.+++. |.    ..++|++|++++|.+++ ++.+..+++|+.|++++|.+++
T Consensus       138 L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~l-p~----~~~~L~~L~L~~n~l~~-l~~~~~l~~L~~L~l~~N~l~~  209 (454)
T 1jl5_A          138 VSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKKL-PD----LPPSLEFIAAGNNQLEE-LPELQNLPFLTAIYADNNSLKK  209 (454)
T ss_dssp             CCSSCCSS-CC-CCTTCTTCCEEECCSSCCSCC-CC----CCTTCCEEECCSSCCSS-CCCCTTCTTCCEEECCSSCCSS
T ss_pred             CcCCCCCC-Cc-ccCCCCCCCEEECCCCcCccc-CC----CcccccEEECcCCcCCc-CccccCCCCCCEEECCCCcCCc
Confidence            66666665 55 477778888888888877764 22    12477888888887776 3455566666666666666654


Q ss_pred             CCCCCCCCccEEEccCCcccccCChhHhhccCCCCCcCeEecCCCCCcccCCcccccCCCCceecccCccccccCCcCcC
Q 048402          265 PLPLISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLG  344 (677)
Q Consensus       265 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  344 (677)
                       +|...++|++|++++|.++                             .+| .++.+++|++|++++|++++ +|..  
T Consensus       210 -l~~~~~~L~~L~l~~n~l~-----------------------------~lp-~~~~l~~L~~L~l~~N~l~~-l~~~--  255 (454)
T 1jl5_A          210 -LPDLPLSLESIVAGNNILE-----------------------------ELP-ELQNLPFLTTIYADNNLLKT-LPDL--  255 (454)
T ss_dssp             -CCCCCTTCCEEECCSSCCS-----------------------------SCC-CCTTCTTCCEEECCSSCCSS-CCSC--
T ss_pred             -CCCCcCcccEEECcCCcCC-----------------------------ccc-ccCCCCCCCEEECCCCcCCc-cccc--
Confidence             2323344555555555444                             233 24444455555555554442 2221  


Q ss_pred             CCCCccEEECcCCcccccCCccCcCCCCCCEEecCCCcccccCChhhhhccCCceEEEcCCCcccccCCccccCC-CCCC
Q 048402          345 SLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDL-AFLQ  423 (677)
Q Consensus       345 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~  423 (677)
                       .++|+.|++++|++++ +|..   .++|++|++++|.+.+ +|.    ..++|++|++++|++++. +    .+ ++|+
T Consensus       256 -~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~-l~~----~~~~L~~L~l~~N~l~~i-~----~~~~~L~  320 (454)
T 1jl5_A          256 -PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSG-LSE----LPPNLYYLNASSNEIRSL-C----DLPPSLE  320 (454)
T ss_dssp             -CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSE-ESC----CCTTCCEEECCSSCCSEE-C----CCCTTCC
T ss_pred             -ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCc-ccC----cCCcCCEEECcCCcCCcc-c----CCcCcCC
Confidence             2445555555555543 2221   2455555555555542 221    124555555555555531 1    12 3566


Q ss_pred             EEeCCCCcCCCCcCccccccccCccccccCcccCccCCCCCCCcccccceeeEeecCCchhhhhhhccccEEEcccCccc
Q 048402          424 ILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLT  503 (677)
Q Consensus       424 ~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~  503 (677)
                      +|++++|++++ +|..                                                 +++|+.|++++|+++
T Consensus       321 ~L~Ls~N~l~~-lp~~-------------------------------------------------~~~L~~L~L~~N~l~  350 (454)
T 1jl5_A          321 ELNVSNNKLIE-LPAL-------------------------------------------------PPRLERLIASFNHLA  350 (454)
T ss_dssp             EEECCSSCCSC-CCCC-------------------------------------------------CTTCCEEECCSSCCS
T ss_pred             EEECCCCcccc-cccc-------------------------------------------------CCcCCEEECCCCccc
Confidence            66666666553 3321                                                 123466666666665


Q ss_pred             ccCCcccCCCCCCcEEeccCCccee--ecccccccCCCCcEEECCCCcccccCccccccCCCCCEEEcccCcccc
Q 048402          504 KSIPLEMTNLKATQSLNFSHNSFTG--RIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLSNNKLTG  576 (677)
Q Consensus       504 ~~~~~~l~~l~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~  576 (677)
                      + +|.   .+++|++|++++|++++  .+|..++.+        +.|...+.+|..   +++|++||+++|++++
T Consensus       351 ~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L--------~~n~~~~~i~~~---~~~L~~L~ls~N~l~~  410 (454)
T 1jl5_A          351 E-VPE---LPQNLKQLHVEYNPLREFPDIPESVEDL--------RMNSHLAEVPEL---PQNLKQLHVETNPLRE  410 (454)
T ss_dssp             C-CCC---CCTTCCEEECCSSCCSSCCCCCTTCCEE--------ECCC---------------------------
T ss_pred             c-ccc---hhhhccEEECCCCCCCcCCCChHHHHhh--------hhcccccccccc---cCcCCEEECCCCcCCc
Confidence            3 443   35666666666666665  444444322        234444455442   3566666666666665

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=2.3e-38  Score=335.33  Aligned_cols=409  Identities=21%  Similarity=0.252  Sum_probs=216.4

Q ss_pred             CcccEEEccCCCCceecCCccccCCCCCCEEecCCCCCCCccCchhhcCCCCC-------------CEEEccCCcCCccc
Q 048402            2 IHLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNL-------------KSINLRGVHLSQEI   68 (677)
Q Consensus         2 ~~L~~L~Ls~n~~~~~i~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L-------------~~L~l~~n~l~~~~   68 (677)
                      ++|++|++++|.+ |.+ |.+++++++|++|+++ ++.+.+.+|.+++++++|             ++|++++|.+++.+
T Consensus        11 ~~L~~L~l~~n~l-~~i-P~~i~~L~~L~~L~l~-~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp   87 (454)
T 1jl5_A           11 TFLQEPLRHSSNL-TEM-PVEAENVKSKTEYYNA-WSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLP   87 (454)
T ss_dssp             -------------------------CCHHHHHHH-HHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCC
T ss_pred             ccchhhhcccCch-hhC-ChhHhcccchhhhhcc-CCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCC
Confidence            5789999999999 599 7889999999999999 778888999999998875             89999999888632


Q ss_pred             chhhhhccccCcCCccEEEcccCcCccccccccCCCCCCCEEECcCCccccCCCcCCCCCCCCCEEEccccccccccChh
Q 048402           69 SEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEI  148 (677)
Q Consensus        69 ~~~~~~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~l~~~  148 (677)
                       ..   .+     +|++|++++|.+++ +|..   .++|++|++++|.+++ ++..   .++|++|++++|.++ .+|  
T Consensus        88 -~~---~~-----~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~-~lp--  147 (454)
T 1jl5_A           88 -EL---PP-----HLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLE-KLP--  147 (454)
T ss_dssp             -SC---CT-----TCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCS-SCC--
T ss_pred             -CC---cC-----CCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCC-CCc--
Confidence             21   23     78999999999886 5543   3788999999998874 3321   168999999999887 477  


Q ss_pred             hhhCCCCCCEEEeeccccceecCCCCCCCcCccEEEeecccCCCCCChhccCCCCCCEEEccCCCCCCccchHHHhccCC
Q 048402          149 HFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQ  228 (677)
Q Consensus       149 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~  228 (677)
                      .++++++|++|++++|.+++.. ..   ..+|++|++++|.+.+ +| .++.+++|++|++++|.+++...     ..++
T Consensus       148 ~~~~l~~L~~L~l~~N~l~~lp-~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l~~-----~~~~  216 (454)
T 1jl5_A          148 ELQNSSFLKIIDVDNNSLKKLP-DL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKLPD-----LPLS  216 (454)
T ss_dssp             CCTTCTTCCEEECCSSCCSCCC-CC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSCCC-----CCTT
T ss_pred             ccCCCCCCCEEECCCCcCcccC-CC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcCCC-----CcCc
Confidence            3888999999999998887632 22   2478888888888876 45 57888888888888888876422     1247


Q ss_pred             ccEEECCCccCccccCCccccccccEEEcccCCCCCCCCCCCCCccEEEccCCcccccCChhHhhccCCCCCcCeEecCC
Q 048402          229 LKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNNMSGPLPLISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKD  308 (677)
Q Consensus       229 L~~L~Ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~  308 (677)
                      |++|++++|.+. .++.+..+++|+.|++++|.+++ +|..+++|++|++++|.+++. |..       +++|++|++++
T Consensus       217 L~~L~l~~n~l~-~lp~~~~l~~L~~L~l~~N~l~~-l~~~~~~L~~L~l~~N~l~~l-~~~-------~~~L~~L~ls~  286 (454)
T 1jl5_A          217 LESIVAGNNILE-ELPELQNLPFLTTIYADNNLLKT-LPDLPPSLEALNVRDNYLTDL-PEL-------PQSLTFLDVSE  286 (454)
T ss_dssp             CCEEECCSSCCS-SCCCCTTCTTCCEEECCSSCCSS-CCSCCTTCCEEECCSSCCSCC-CCC-------CTTCCEEECCS
T ss_pred             ccEEECcCCcCC-cccccCCCCCCCEEECCCCcCCc-ccccccccCEEECCCCccccc-Ccc-------cCcCCEEECcC
Confidence            888888888777 34456666677777777766664 233345555555555555431 110       23444555554


Q ss_pred             CCCcccCCcccccCCCCceecccCccccccCCcCcCCCCCccEEECcCCcccccCCccCcCC-CCCCEEecCCCcccccC
Q 048402          309 NSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNC-TALESLDVGENEFVGNI  387 (677)
Q Consensus       309 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l-~~L~~L~l~~n~l~~~~  387 (677)
                      |.                        +++. |..   .++|+.|++++|++++. +    .+ ++|++|++++|++.+ +
T Consensus       287 N~------------------------l~~l-~~~---~~~L~~L~l~~N~l~~i-~----~~~~~L~~L~Ls~N~l~~-l  332 (454)
T 1jl5_A          287 NI------------------------FSGL-SEL---PPNLYYLNASSNEIRSL-C----DLPPSLEELNVSNNKLIE-L  332 (454)
T ss_dssp             SC------------------------CSEE-SCC---CTTCCEEECCSSCCSEE-C----CCCTTCCEEECCSSCCSC-C
T ss_pred             Cc------------------------cCcc-cCc---CCcCCEEECcCCcCCcc-c----CCcCcCCEEECCCCcccc-c
Confidence            44                        4431 110   13455555555555431 1    11 355555665555552 4


Q ss_pred             ChhhhhccCCceEEEcCCCcccccCCccccCCCCCCEEeCCCCcCCC--CcCccccccccCccccccCcccCccCCCCCC
Q 048402          388 PTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFG--TIPKCINNITGMVAANSFTRSSQQYLPLPLD  465 (677)
Q Consensus       388 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~  465 (677)
                      |..    +++|++|++++|+++ .+|.   .+++|++|++++|++++  .+|..+..+..-        ..         
T Consensus       333 p~~----~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n--------~~---------  387 (454)
T 1jl5_A          333 PAL----PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMN--------SH---------  387 (454)
T ss_dssp             CCC----CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECC--------C----------
T ss_pred             ccc----CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhc--------cc---------
Confidence            432    355666666666655 2333   34566666666666665  555554443210        00         


Q ss_pred             CcccccceeeEeecCCchhhhhhhccccEEEcccCcccc--cCCcccCCCCCCcEEeccCCcceeecccccc
Q 048402          466 GDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTK--SIPLEMTNLKATQSLNFSHNSFTGRIPESIG  535 (677)
Q Consensus       466 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~  535 (677)
                                      .......+++|+.||+++|++++  .+|.      +++.|.+.+|.+.+..|.+..
T Consensus       388 ----------------~~~i~~~~~~L~~L~ls~N~l~~~~~iP~------sl~~L~~~~~~~~~~~~~~~~  437 (454)
T 1jl5_A          388 ----------------LAEVPELPQNLKQLHVETNPLREFPDIPE------SVEDLRMNSERVVDPYEFAHE  437 (454)
T ss_dssp             ------------------------------------------------------------------------
T ss_pred             ----------------ccccccccCcCCEEECCCCcCCccccchh------hHhheeCcCcccCCccccCHH
Confidence                            00011124678999999999987  5553      467788899988876665443

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=2.1e-35  Score=312.85  Aligned_cols=122  Identities=17%  Similarity=0.198  Sum_probs=59.0

Q ss_pred             cccCCCCCCEEecCCCCCCCccCchhhcCCCCCCEEEccCCcCCcccchhhhhccccCcCCccEEEcccCcCcccccccc
Q 048402           22 ALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQL  101 (677)
Q Consensus        22 ~~~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~~~~~  101 (677)
                      .+.++++|++|+++ ++.+.+. | .+..+++|++|++++|.+++. +  ++.++     +|++|++++|.+++. +  +
T Consensus        37 ~~~~l~~L~~L~Ls-~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~-----~L~~L~Ls~N~l~~~-~--~  102 (457)
T 3bz5_A           37 SEEQLATLTSLDCH-NSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNT-----NLTYLACDSNKLTNL-D--V  102 (457)
T ss_dssp             EHHHHTTCCEEECC-SSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCT-----TCSEEECCSSCCSCC-C--C
T ss_pred             ChhHcCCCCEEEcc-CCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCC-----CCCEEECcCCCCcee-e--c
Confidence            34445555555555 3444432 2 355555555555555555543 1  34444     555555555555542 2  4


Q ss_pred             CCCCCCCEEECcCCccccCCCcCCCCCCCCCEEEccccccccccChhhhhCCCCCCEEEeecc
Q 048402          102 GQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGN  164 (677)
Q Consensus       102 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~l~~~~~~~l~~L~~L~l~~n  164 (677)
                      +++++|++|++++|.+++. |  ++.+++|++|++++|.+++ ++   ++++++|+.|++++|
T Consensus       103 ~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~-l~---l~~l~~L~~L~l~~n  158 (457)
T 3bz5_A          103 TPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTE-ID---VSHNTQLTELDCHLN  158 (457)
T ss_dssp             TTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSC-CC---CTTCTTCCEEECTTC
T ss_pred             CCCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCccce-ec---cccCCcCCEEECCCC
Confidence            5555555555555555432 2  4455555555555555542 21   344445555555444

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=1.1e-34  Score=310.26  Aligned_cols=345  Identities=26%  Similarity=0.312  Sum_probs=187.3

Q ss_pred             CCCCCEEecCCCCCCCccCchhhcCCCCCCEEEccCCcCCcccchhhhhccccCcCCccEEEcccCcCccccccccCCCC
Q 048402           26 LTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFK  105 (677)
Q Consensus        26 l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~  105 (677)
                      +++|++|+++ ++.+.. +| .+..+++|++|++++|.+++..+  +..++     +|++|++++|.+++..+  +.+++
T Consensus        45 l~~l~~L~l~-~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~-----~L~~L~l~~n~l~~~~~--~~~l~  112 (466)
T 1o6v_A           45 LDQVTTLQAD-RLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP--LKNLT-----KLVDILMNNNQIADITP--LANLT  112 (466)
T ss_dssp             HHTCCEEECC-SSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCT-----TCCEEECCSSCCCCCGG--GTTCT
T ss_pred             hccccEEecC-CCCCcc-Cc-chhhhcCCCEEECCCCccCCchh--hhccc-----cCCEEECCCCccccChh--hcCCC
Confidence            5667777776 444442 33 36667777777777777765544  66666     67777777777765444  67777


Q ss_pred             CCCEEECcCCccccCCCcCCCCCCCCCEEEccccccccccChhhhhCCCCCCEEEeeccccceecCCCCCCCcCccEEEe
Q 048402          106 NLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQLVALGF  185 (677)
Q Consensus       106 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l  185 (677)
                      +|++|++++|.+++..+  +.++++|++|++++|.+. .++  .+.++++|+.|+++ +.+....  .+..+++|+.|++
T Consensus       113 ~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~--~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l  184 (466)
T 1o6v_A          113 NLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTIS-DIS--ALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDI  184 (466)
T ss_dssp             TCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEEC-CCG--GGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEEC
T ss_pred             CCCEEECCCCCCCCChH--HcCCCCCCEEECCCCccC-CCh--hhccCCcccEeecC-CcccCch--hhccCCCCCEEEC
Confidence            77777777777764422  667777777777777765 343  36677777777775 3333221  2455556666666


Q ss_pred             ecccCCCCCChhccCCCCCCEEEccCCCCCCccchHHHhccCCccEEECCCccCccccCCccccccccEEEcccCCCCCC
Q 048402          186 HNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNNMSGP  265 (677)
Q Consensus       186 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~  265 (677)
                      ++|.+...  ..+..+++|++|++++|.+++..+   ...+++|++|++++|.+.+. +.+..+++|+.|++++|.+.+.
T Consensus       185 ~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~~  258 (466)
T 1o6v_A          185 SSNKVSDI--SVLAKLTNLESLIATNNQISDITP---LGILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQISNL  258 (466)
T ss_dssp             CSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCC
T ss_pred             cCCcCCCC--hhhccCCCCCEEEecCCccccccc---ccccCCCCEEECCCCCcccc-hhhhcCCCCCEEECCCCccccc
Confidence            66555432  235556666666666666655544   23355666666666665532 2333444455555544444433


Q ss_pred             CCCCCCCccEEEccCCcccccCChhHhhccCCCCCcCeEecCCCCCcccCCcccccCCCCceecccCccccccCCcCcCC
Q 048402          266 LPLISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGS  345 (677)
Q Consensus       266 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  345 (677)
                      .+                           +..+++|++|++++|.+.+..+  +..+++|++|++++|++.+..+  +..
T Consensus       259 ~~---------------------------~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~  307 (466)
T 1o6v_A          259 AP---------------------------LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISN  307 (466)
T ss_dssp             GG---------------------------GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGG
T ss_pred             hh---------------------------hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcC
Confidence            32                           2224445555555554443222  4445555555555555543222  444


Q ss_pred             CCCccEEECcCCcccccCCccCcCCCCCCEEecCCCcccccCChhhhhccCCceEEEcCCCcccccCCccccCCCCCCEE
Q 048402          346 LTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQIL  425 (677)
Q Consensus       346 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  425 (677)
                      +++|+.|++++|++++..|  +..+++|++|++++|++.+. + .+ ..+++|+.|++++|++++..|  +..+++|+.|
T Consensus       308 l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~-~l-~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L  380 (466)
T 1o6v_A          308 LKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV-S-SL-ANLTNINWLSAGHNQISDLTP--LANLTRITQL  380 (466)
T ss_dssp             CTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC-G-GG-TTCTTCCEEECCSSCCCBCGG--GTTCTTCCEE
T ss_pred             CCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc-h-hh-ccCCCCCEEeCCCCccCccch--hhcCCCCCEE
Confidence            5555555555555544333  44455555555555554422 2 11 234555555555555554433  4455555555


Q ss_pred             eCCCCcCCC
Q 048402          426 DLADNNLFG  434 (677)
Q Consensus       426 ~Ls~n~l~~  434 (677)
                      ++++|++++
T Consensus       381 ~l~~n~~~~  389 (466)
T 1o6v_A          381 GLNDQAWTN  389 (466)
T ss_dssp             ECCCEEEEC
T ss_pred             eccCCcccC
Confidence            555555543

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=4.6e-35  Score=313.17  Aligned_cols=342  Identities=26%  Similarity=0.328  Sum_probs=267.6

Q ss_pred             CcccEEEccCCCCceecCCccccCCCCCCEEecCCCCCCCccCchhhcCCCCCCEEEccCCcCCcccchhhhhccccCcC
Q 048402            2 IHLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVSI   81 (677)
Q Consensus         2 ~~L~~L~Ls~n~~~~~i~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~   81 (677)
                      +++++|+++++.+. .+ + .+..+++|++|+++ ++.+.+..+  +.++++|++|++++|.+.+..+  +..++     
T Consensus        46 ~~l~~L~l~~~~i~-~l-~-~~~~l~~L~~L~Ls-~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~-----  112 (466)
T 1o6v_A           46 DQVTTLQADRLGIK-SI-D-GVEYLNNLTQINFS-NNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLT-----  112 (466)
T ss_dssp             HTCCEEECCSSCCC-CC-T-TGGGCTTCCEEECC-SSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCT-----
T ss_pred             ccccEEecCCCCCc-cC-c-chhhhcCCCEEECC-CCccCCchh--hhccccCCEEECCCCccccChh--hcCCC-----
Confidence            57899999999998 66 3 48899999999999 777775543  9999999999999999997765  88888     


Q ss_pred             CccEEEcccCcCccccccccCCCCCCCEEECcCCccccCCCcCCCCCCCCCEEEccccccccccChhhhhCCCCCCEEEe
Q 048402           82 ELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRV  161 (677)
Q Consensus        82 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~l~~~~~~~l~~L~~L~l  161 (677)
                      +|++|++++|.+++..+  +.++++|++|++++|.+.+. + .+..+++|++|+++ |.+. .++  .+.++++|+.|++
T Consensus       113 ~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~-~~~--~~~~l~~L~~L~l  184 (466)
T 1o6v_A          113 NLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFG-NQVT-DLK--PLANLTTLERLDI  184 (466)
T ss_dssp             TCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEE-ESCC-CCG--GGTTCTTCCEEEC
T ss_pred             CCCEEECCCCCCCCChH--HcCCCCCCEEECCCCccCCC-h-hhccCCcccEeecC-Cccc-Cch--hhccCCCCCEEEC
Confidence            99999999999997544  99999999999999999853 3 58999999999996 4554 333  3889999999999


Q ss_pred             eccccceecCCCCCCCcCccEEEeecccCCCCCChhccCCCCCCEEEccCCCCCCccchHHHhccCCccEEECCCccCcc
Q 048402          162 GGNKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHG  241 (677)
Q Consensus       162 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~  241 (677)
                      ++|.+...  ..+..+++|+.|++++|.+.+..|  ++.+++|++|++++|.+++..   .+..+++|++|++++|.+.+
T Consensus       185 ~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~---~l~~l~~L~~L~l~~n~l~~  257 (466)
T 1o6v_A          185 SSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIG---TLASLTNLTDLDLANNQISN  257 (466)
T ss_dssp             CSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG---GGGGCTTCSEEECCSSCCCC
T ss_pred             cCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccch---hhhcCCCCCEEECCCCcccc
Confidence            99998765  347888999999999999987665  778999999999999998862   24568999999999999987


Q ss_pred             ccCCccccccccEEEcccCCCCCCCCC-CCCCccEEEccCCcccccCChhHhhccCCCCCcCeEecCCCCCcccCCcccc
Q 048402          242 QITDLTKVTQLLFLSVHSNNMSGPLPL-ISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWM  320 (677)
Q Consensus       242 ~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~  320 (677)
                      ..+ +..+++|+.|++++|.+.+..+. .+++|+.|++++|.+.+..+      +..+++|+.|++++|.+++..|  +.
T Consensus       258 ~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~------~~~l~~L~~L~L~~n~l~~~~~--~~  328 (466)
T 1o6v_A          258 LAP-LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP------ISNLKNLTYLTLYFNNISDISP--VS  328 (466)
T ss_dssp             CGG-GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGG------GGGCTTCSEEECCSSCCSCCGG--GG
T ss_pred             chh-hhcCCCCCEEECCCCccCccccccCCCccCeEEcCCCcccCchh------hcCCCCCCEEECcCCcCCCchh--hc
Confidence            665 66778888888888887765542 25677777777777665433      2336677777777777665444  56


Q ss_pred             cCCCCceecccCccccccCCcCcCCCCCccEEECcCCcccccCCccCcCCCCCCEEecCCCccc
Q 048402          321 SYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFV  384 (677)
Q Consensus       321 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~  384 (677)
                      .+++|++|++++|++++.  ..+..+++|+.|++++|++++..|  +..+++|+.|++++|+++
T Consensus       329 ~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~  388 (466)
T 1o6v_A          329 SLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWT  388 (466)
T ss_dssp             GCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEE
T ss_pred             cCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCccc
Confidence            667777777777766643  346666777777777777665554  566667777777777665

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=2.9e-35  Score=311.75  Aligned_cols=356  Identities=18%  Similarity=0.206  Sum_probs=270.2

Q ss_pred             CCcccEEEccCCCCceecCCccccCCCCCCEEecCCCCCCCccCchhhcCCCCCCEEEccCCcCCcccchhhhhccccCc
Q 048402            1 FIHLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVS   80 (677)
Q Consensus         1 ~~~L~~L~Ls~n~~~~~i~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~   80 (677)
                      +++|++|++++|.++ .+ | .+..+++|++|+++ ++.+++. |  ++.+++|++|++++|.+++. +  ++.++    
T Consensus        41 l~~L~~L~Ls~n~l~-~~-~-~l~~l~~L~~L~Ls-~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~----  106 (457)
T 3bz5_A           41 LATLTSLDCHNSSIT-DM-T-GIEKLTGLTKLICT-SNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLT----  106 (457)
T ss_dssp             HTTCCEEECCSSCCC-CC-T-TGGGCTTCSEEECC-SSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCT----
T ss_pred             cCCCCEEEccCCCcc-cC-h-hhcccCCCCEEEcc-CCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCC----
Confidence            367899999999988 45 3 68889999999999 6677764 3  88899999999999998875 3  67777    


Q ss_pred             CCccEEEcccCcCccccccccCCCCCCCEEECcCCccccCCCcCCCCCCCCCEEEccccccccccChhhhhCCCCCCEEE
Q 048402           81 IELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFR  160 (677)
Q Consensus        81 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~l~~~~~~~l~~L~~L~  160 (677)
                       +|++|++++|.+++. +  ++++++|++|++++|.+++.   .++.+++|++|++++|...+.+   .+..+++|+.|+
T Consensus       107 -~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~---~~~~l~~L~~L~  176 (457)
T 3bz5_A          107 -KLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL---DVTPQTQLTTLD  176 (457)
T ss_dssp             -TCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC---CCTTCTTCCEEE
T ss_pred             -cCCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc---ccccCCcCCEEE
Confidence             899999999999864 4  88899999999999998864   3888899999999999655555   367888999999


Q ss_pred             eeccccceecCCCCCCCcCccEEEeecccCCCCCChhccCCCCCCEEEccCCCCCCccchHHHhccCCccEEECCCccCc
Q 048402          161 VGGNKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFH  240 (677)
Q Consensus       161 l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~  240 (677)
                      +++|.+++..   +..+++|+.|++++|.+.+.   .++.+++|++|++++|+++++ |   +..+++|+.|++++|+++
T Consensus       177 ls~n~l~~l~---l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~i-p---~~~l~~L~~L~l~~N~l~  246 (457)
T 3bz5_A          177 CSFNKITELD---VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEI-D---VTPLTQLTYFDCSVNPLT  246 (457)
T ss_dssp             CCSSCCCCCC---CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCC-C---CTTCTTCSEEECCSSCCS
T ss_pred             CCCCccceec---cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCccccc-C---ccccCCCCEEEeeCCcCC
Confidence            9999888743   66777888888888877764   367777888888888887774 3   345677788888887777


Q ss_pred             cccCCccccccccEEEcccCCCCCCCCCCCCCccEEEccCCcccccCChhHhhccCCCCCcCeEecCCCCCcccCCcccc
Q 048402          241 GQITDLTKVTQLLFLSVHSNNMSGPLPLISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWM  320 (677)
Q Consensus       241 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~  320 (677)
                      +..  ...+++|+.|++++|           +|+.|++++|.+.+.+|      ...+++|+.|++++|...+.+|.   
T Consensus       247 ~~~--~~~l~~L~~L~l~~n-----------~L~~L~l~~n~~~~~~~------~~~l~~L~~L~Ls~n~~l~~l~~---  304 (457)
T 3bz5_A          247 ELD--VSTLSKLTTLHCIQT-----------DLLEIDLTHNTQLIYFQ------AEGCRKIKELDVTHNTQLYLLDC---  304 (457)
T ss_dssp             CCC--CTTCTTCCEEECTTC-----------CCSCCCCTTCTTCCEEE------CTTCTTCCCCCCTTCTTCCEEEC---
T ss_pred             CcC--HHHCCCCCEEeccCC-----------CCCEEECCCCccCCccc------ccccccCCEEECCCCcccceecc---
Confidence            653  334566777776654           35566777776665544      13467777777777776655553   


Q ss_pred             cCCCCceecccCccccccCCcCcCCCCCccEEECcCCcccccCCccCcCCCCCCEEecCCCcccccCChhhhhccCCceE
Q 048402          321 SYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVV  400 (677)
Q Consensus       321 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~  400 (677)
                      ..++|+.|++++|             ++|+.|++++|++++. +  +..+++|+.|++++|++.+         ++.|..
T Consensus       305 ~~~~L~~L~l~~~-------------~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~---------l~~L~~  359 (457)
T 3bz5_A          305 QAAGITELDLSQN-------------PKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD---------FSSVGK  359 (457)
T ss_dssp             TTCCCSCCCCTTC-------------TTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB---------CTTGGG
T ss_pred             CCCcceEechhhc-------------ccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC---------cccccc
Confidence            3345555555443             7899999999999974 3  8899999999999999974         356677


Q ss_pred             EEcCCCcccccCCccccCCCCCCEEeCCCCcCCCCcCccccc
Q 048402          401 LILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINN  442 (677)
Q Consensus       401 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~  442 (677)
                      |++++|.+.|.     ..+..|+.+++++|+++|.+|..+..
T Consensus       360 L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~~~  396 (457)
T 3bz5_A          360 IPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDLLD  396 (457)
T ss_dssp             SSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTCBC
T ss_pred             ccccCCcEEec-----ceeeecCccccccCcEEEEcChhHhc
Confidence            78899988865     34567888999999999999976543

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.5e-35  Score=318.60  Aligned_cols=212  Identities=19%  Similarity=0.178  Sum_probs=140.1

Q ss_pred             CCCCcCeEecCCCCCcccCCcccccCCCCceecccCccccccCCcCcCCCCCccEEECcCCcccccCCccCcCCCCCCEE
Q 048402          297 EPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESL  376 (677)
Q Consensus       297 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L  376 (677)
                      .+++|++|++++|.+.+..+..|.++++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..|..+++|+.|
T Consensus       126 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L  205 (477)
T 2id5_A          126 DLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVL  205 (477)
T ss_dssp             TCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEE
T ss_pred             ccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCccccee
Confidence            36778888888888877777788888888888888888886666668888888888888888887777778888888888


Q ss_pred             ecCCCcccccCChhhhhccCCceEEEcCCCcccccCCccccCCCCCCEEeCCCCcCCCCcCccccccccCccccccCccc
Q 048402          377 DVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSS  456 (677)
Q Consensus       377 ~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~  456 (677)
                      ++++|...+.+|...+ ...+|+.|++++|.+++..+..+..+++|+.|++++|++.                       
T Consensus       206 ~l~~~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-----------------------  261 (477)
T 2id5_A          206 EISHWPYLDTMTPNCL-YGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS-----------------------  261 (477)
T ss_dssp             EEECCTTCCEECTTTT-TTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCC-----------------------
T ss_pred             eCCCCccccccCcccc-cCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCC-----------------------
Confidence            8888877666666555 3446777777777666443345666666666666666554                       


Q ss_pred             CccCCCCCCCcccccceeeEeecCCchhhhhhhccccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeeccccccc
Q 048402          457 QQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGA  536 (677)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~  536 (677)
                                                                     +..+..|.++++|++|+|++|++++..|..|.+
T Consensus       262 -----------------------------------------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  294 (477)
T 2id5_A          262 -----------------------------------------------TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRG  294 (477)
T ss_dssp             -----------------------------------------------EECTTSCTTCTTCCEEECCSSCCSEECTTTBTT
T ss_pred             -----------------------------------------------ccChhhccccccCCEEECCCCccceECHHHhcC
Confidence                                                           333444455555555555555555555555555


Q ss_pred             CCCCcEEECCCCcccccCccccccCCCCCEEEcccCcccccCC
Q 048402          537 MRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLSNNKLTGKIP  579 (677)
Q Consensus       537 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p  579 (677)
                      +++|+.|++++|++++..+..|..+++|++|++++|++.|.++
T Consensus       295 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~  337 (477)
T 2id5_A          295 LNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCR  337 (477)
T ss_dssp             CTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGG
T ss_pred             cccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccc
Confidence            5555555555555554444445555555555555555555443

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=4.7e-34  Score=306.86  Aligned_cols=322  Identities=19%  Similarity=0.173  Sum_probs=251.6

Q ss_pred             cEEEccCCCCceecCCccccCCCCCCEEecCCCCCCCccCchhhcCCCCCCEEEccCCcCCcccchhhhhccccCcCCcc
Q 048402            5 EYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVSIELE   84 (677)
Q Consensus         5 ~~L~Ls~n~~~~~i~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~L~   84 (677)
                      +.++.+++.++ .+ |..+  .+++++|+|+ ++.+.+..+..|.++++|++|++++|.+++..|..|..++     +|+
T Consensus        14 ~~v~c~~~~l~-~i-p~~~--~~~l~~L~L~-~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~-----~L~   83 (477)
T 2id5_A           14 RAVLCHRKRFV-AV-PEGI--PTETRLLDLG-KNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLF-----NLR   83 (477)
T ss_dssp             TEEECCSCCCS-SC-CSCC--CTTCSEEECC-SSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT-----TCC
T ss_pred             CEEEeCCCCcC-cC-CCCC--CCCCcEEECC-CCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCc-----cCC
Confidence            57788888887 67 4444  3689999999 7778877788899999999999999999988888888888     899


Q ss_pred             EEEcccCcCccccccccCCCCCCCEEECcCCccccCCCcCCCCCCCCCEEEccccccccccChhhhhCCCCCCEEEeecc
Q 048402           85 SLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGN  164 (677)
Q Consensus        85 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~l~~~~~~~l~~L~~L~l~~n  164 (677)
                      +|++++|.+++..+..|.++++|++|++++|.+.+..+..|..+++|++|++++|.+. .++...|.++++|+.|++++|
T Consensus        84 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n  162 (477)
T 2id5_A           84 TLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKC  162 (477)
T ss_dssp             EEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCC-EECTTSSTTCTTCCEEEEESC
T ss_pred             EEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccc-eeChhhccCCCCCCEEECCCC
Confidence            9999999999777777899999999999999998888888999999999999999997 444447889999999999999


Q ss_pred             ccceecCCCCCCCcCccEEEeecccCCCCCChhccCCCCCCEEEccCCCCCCccchHHHhccCCccEEECCCccCccccC
Q 048402          165 KLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQIT  244 (677)
Q Consensus       165 ~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~  244 (677)
                      .++......+..+++|+.|++++|.+.+..+..+..+++|++|++++|...+..+...+. .                  
T Consensus       163 ~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-~------------------  223 (477)
T 2id5_A          163 NLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLY-G------------------  223 (477)
T ss_dssp             CCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTT-T------------------
T ss_pred             cCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCccccc-C------------------
Confidence            988877777888899999999999998888888999999999999998765543332211 1                  


Q ss_pred             CccccccccEEEcccCCCCCCCCCCCCCccEEEccCCcccccCChhHhhccCCCCCcCeEecCCCCCcccCCcccccCCC
Q 048402          245 DLTKVTQLLFLSVHSNNMSGPLPLISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQN  324 (677)
Q Consensus       245 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~  324 (677)
                                                .+|++|++++|.+++..+..    +..+++|+.|++++|.+++..+..|..+++
T Consensus       224 --------------------------~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  273 (477)
T 2id5_A          224 --------------------------LNLTSLSITHCNLTAVPYLA----VRHLVYLRFLNLSYNPISTIEGSMLHELLR  273 (477)
T ss_dssp             --------------------------CCCSEEEEESSCCCSCCHHH----HTTCTTCCEEECCSSCCCEECTTSCTTCTT
T ss_pred             --------------------------ccccEEECcCCcccccCHHH----hcCccccCeeECCCCcCCccChhhcccccc
Confidence                                      13344444444444222222    233677777777777777666667777778


Q ss_pred             CceecccCccccccCCcCcCCCCCccEEECcCCcccccCCccCcCCCCCCEEecCCCccccc
Q 048402          325 LEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGN  386 (677)
Q Consensus       325 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~  386 (677)
                      |++|++++|++++..|..|..+++|+.|++++|++++..+..|..+++|++|++++|++...
T Consensus       274 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~  335 (477)
T 2id5_A          274 LQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACD  335 (477)
T ss_dssp             CCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECS
T ss_pred             CCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCc
Confidence            88888888888777777777788888888888887766666777777888888888877643

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=3.3e-34  Score=289.07  Aligned_cols=258  Identities=29%  Similarity=0.527  Sum_probs=227.3

Q ss_pred             CCcCeEecCCCCCcc--cCCcccccCCCCceecccC-ccccccCCcCcCCCCCccEEECcCCcccccCCccCcCCCCCCE
Q 048402          299 KSLIGLKLKDNSLQG--EIPDCWMSYQNLEILELSN-NKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALES  375 (677)
Q Consensus       299 ~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~  375 (677)
                      .+++.|++++|.+.+  .+|..+..+++|++|++++ |.+.+.+|..|..+++|++|++++|++++..|..|..+++|++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            467788888888887  7888888888889999884 8888888888888889999999999888888888888999999


Q ss_pred             EecCCCcccccCChhhhhccCCceEEEcCCCcccccCCccccCCC-CCCEEeCCCCcCCCCcCccccccccCccccccCc
Q 048402          376 LDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLA-FLQILDLADNNLFGTIPKCINNITGMVAANSFTR  454 (677)
Q Consensus       376 L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~  454 (677)
                      |++++|.+.+.+|..+. .+++|++|++++|.+++.+|..+..++ +|++|++++|++.+.+|..+..++          
T Consensus       130 L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~----------  198 (313)
T 1ogq_A          130 LDFSYNALSGTLPPSIS-SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN----------  198 (313)
T ss_dssp             EECCSSEEESCCCGGGG-GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC----------
T ss_pred             EeCCCCccCCcCChHHh-cCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc----------
Confidence            99999988878887765 688999999999999888888888888 899999999999888887665543          


Q ss_pred             ccCccCCCCCCCcccccceeeEeecCCchhhhhhhccccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeeccccc
Q 048402          455 SSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESI  534 (677)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~  534 (677)
                                                           |+.|++++|.+++..|..+..+++|++|++++|++++.+|. +
T Consensus       199 -------------------------------------L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~  240 (313)
T 1ogq_A          199 -------------------------------------LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-V  240 (313)
T ss_dssp             -------------------------------------CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-C
T ss_pred             -------------------------------------ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-c
Confidence                                                 48999999999999999999999999999999999976665 8


Q ss_pred             ccCCCCcEEECCCCcccccCccccccCCCCCEEEcccCcccccCCCCCCCCCcCcccccCC-CCCCCCCCCCC
Q 048402          535 GAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLSNNKLTGKIPSSTQLQSFDASSFTGN-DLCGAPLPKNC  606 (677)
Q Consensus       535 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n-~l~~~~~~~~c  606 (677)
                      ..+++|++|++++|++++.+|..+..+++|++|++++|+++|.+|....++.++.+++.+| .+||.|.. .|
T Consensus       241 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~~-~C  312 (313)
T 1ogq_A          241 GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-AC  312 (313)
T ss_dssp             CCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred             cccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCCCCC-CC
Confidence            8999999999999999999999999999999999999999999999888899999999999 59998765 45

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=1.1e-32  Score=288.08  Aligned_cols=311  Identities=21%  Similarity=0.226  Sum_probs=216.4

Q ss_pred             CCCCCCEEEccCCcCCcccchhhhhccccCcCCccEEEcccCcCccccccccCCCCCCCEEECcCCccccCCCcCCCCCC
Q 048402           50 SLCNLKSINLRGVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLS  129 (677)
Q Consensus        50 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  129 (677)
                      .++++++|+++++.++..++..+..++     +|++|++++|.+++..+..|..+++|++|++++|.+++..|..|++++
T Consensus        43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~-----~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  117 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMRKLPAALLDSFR-----QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP  117 (390)
T ss_dssp             GGCCCSEEEEESCEESEECTHHHHHCC-----CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             ccCCceEEEecCCchhhCChhHhcccc-----cCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCC
Confidence            467889999999888877777788888     899999999998877777888999999999999998877788888899


Q ss_pred             CCCEEEccccccccccChhhhhCCCCCCEEEeeccccceecCCCCCCCcCccEEEeecccCCCCCChhccCCCCCCEEEc
Q 048402          130 NLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNL  209 (677)
Q Consensus       130 ~L~~L~L~~n~i~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l  209 (677)
                      +|++|++++|.++ .+|...|.++++|++|++++|.+....+                        ..+..+++|++|++
T Consensus       118 ~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~------------------------~~~~~l~~L~~L~l  172 (390)
T 3o6n_A          118 LLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIED------------------------DTFQATTSLQNLQL  172 (390)
T ss_dssp             TCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCT------------------------TTTSSCTTCCEEEC
T ss_pred             CCCEEECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccCh------------------------hhccCCCCCCEEEC
Confidence            9999999999887 6776567888888888888877765443                        34455555555555


Q ss_pred             cCCCCCCccchHHHhccCCccEEECCCccCccccCCccccccccEEEcccCCCCCCCCCCCCCccEEEccCCcccccCCh
Q 048402          210 LNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNNMSGPLPLISSNLVYLDLSNNSFSGSVSH  289 (677)
Q Consensus       210 ~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  289 (677)
                      ++|.+++...    ..+++|+.+++++|.+.+..    ..++|+.|++++|.+.......                    
T Consensus       173 ~~n~l~~~~~----~~l~~L~~L~l~~n~l~~~~----~~~~L~~L~l~~n~l~~~~~~~--------------------  224 (390)
T 3o6n_A          173 SSNRLTHVDL----SLIPSLFHANVSYNLLSTLA----IPIAVEELDASHNSINVVRGPV--------------------  224 (390)
T ss_dssp             CSSCCSBCCG----GGCTTCSEEECCSSCCSEEE----CCSSCSEEECCSSCCCEEECCC--------------------
T ss_pred             CCCcCCcccc----ccccccceeecccccccccC----CCCcceEEECCCCeeeeccccc--------------------
Confidence            5555554421    23456666666666554321    1123333333333333221111                    


Q ss_pred             hHhhccCCCCCcCeEecCCCCCcccCCcccccCCCCceecccCccccccCCcCcCCCCCccEEECcCCcccccCCccCcC
Q 048402          290 YLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKN  369 (677)
Q Consensus       290 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~  369 (677)
                              +++|+.|++++|.+++.  ..+..+++|++|++++|.+.+..|..|..+++|+.|++++|++++ +|..+..
T Consensus       225 --------~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~  293 (390)
T 3o6n_A          225 --------NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQP  293 (390)
T ss_dssp             --------CSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSC
T ss_pred             --------cccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCC
Confidence                    34566666666666532  356677777777777777776667777777777777777777774 3445566


Q ss_pred             CCCCCEEecCCCcccccCChhhhhccCCceEEEcCCCcccccCCccccCCCCCCEEeCCCCcCCC
Q 048402          370 CTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFG  434 (677)
Q Consensus       370 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~  434 (677)
                      +++|++|++++|++. .+|..+. .+++|++|++++|+++.. +  +..+++|+.|++++|++..
T Consensus       294 l~~L~~L~L~~n~l~-~~~~~~~-~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~  353 (390)
T 3o6n_A          294 IPTLKVLDLSHNHLL-HVERNQP-QFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDC  353 (390)
T ss_dssp             CTTCCEEECCSSCCC-CCGGGHH-HHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEH
T ss_pred             CCCCCEEECCCCcce-ecCcccc-ccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccc
Confidence            778888888888776 5665554 578888888888887743 2  5677888888888887753

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=5.5e-33  Score=290.25  Aligned_cols=314  Identities=19%  Similarity=0.206  Sum_probs=186.9

Q ss_pred             CCCCCCEEEccccccccccChhhhhCCCCCCEEEeeccccceecCCCCCCCcCccEEEeecccCCCCCChhccCCCCCCE
Q 048402          127 HLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQY  206 (677)
Q Consensus       127 ~l~~L~~L~L~~n~i~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~  206 (677)
                      .+++++.|++++|.+. .+|...+.++++|++|++++|.++...+..|..+++|++|++++|.+.+..|..++.+++|++
T Consensus        43 ~l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  121 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV  121 (390)
T ss_dssp             GGCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             ccCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence            3567777777777776 666656777777777777777776655555555555555555555555555555555666666


Q ss_pred             EEccCCCCCCccchHHHhccCCccEEECCCccCccccCCccccccccEEEcccCCCCCCCCCCCCCccEEEccCCccccc
Q 048402          207 LNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNNMSGPLPLISSNLVYLDLSNNSFSGS  286 (677)
Q Consensus       207 L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~  286 (677)
                      |++++|.++...+ ..+..+++|+                                                        
T Consensus       122 L~L~~n~l~~l~~-~~~~~l~~L~--------------------------------------------------------  144 (390)
T 3o6n_A          122 LVLERNDLSSLPR-GIFHNTPKLT--------------------------------------------------------  144 (390)
T ss_dssp             EECCSSCCCCCCT-TTTTTCTTCC--------------------------------------------------------
T ss_pred             EECCCCccCcCCH-HHhcCCCCCc--------------------------------------------------------
Confidence            6665555544322 1112222333                                                        


Q ss_pred             CChhHhhccCCCCCcCeEecCCCCCcccCCcccccCCCCceecccCccccccCCcCcCCCCCccEEECcCCcccccCCcc
Q 048402          287 VSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVS  366 (677)
Q Consensus       287 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~  366 (677)
                                      +|++++|.+.+..+..|..+++|++|++++|.+++.   .+..+++|+.|++++|.+++.    
T Consensus       145 ----------------~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~~----  201 (390)
T 3o6n_A          145 ----------------TLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTL----  201 (390)
T ss_dssp             ----------------EEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSEE----
T ss_pred             ----------------EEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccccc----
Confidence                            333333333323333333344444444444444321   123334444444444444321    


Q ss_pred             CcCCCCCCEEecCCCcccccCChhhhhccCCceEEEcCCCcccccCCccccCCCCCCEEeCCCCcCCCCcCccccccccC
Q 048402          367 LKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGM  446 (677)
Q Consensus       367 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l  446 (677)
                       ...++|++|++++|.+. .+|..   ..++|+.|++++|.+++.  ..+..+++|++|++++|.+.+..|..+..+++ 
T Consensus       202 -~~~~~L~~L~l~~n~l~-~~~~~---~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~-  273 (390)
T 3o6n_A          202 -AIPIAVEELDASHNSIN-VVRGP---VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQR-  273 (390)
T ss_dssp             -ECCSSCSEEECCSSCCC-EEECC---CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSS-
T ss_pred             -CCCCcceEEECCCCeee-ecccc---ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHcccccc-
Confidence             12234555555555554 22222   234566666666665532  34556666666666666666555544444333 


Q ss_pred             ccccccCcccCccCCCCCCCcccccceeeEeecCCchhhhhhhccccEEEcccCcccccCCcccCCCCCCcEEeccCCcc
Q 048402          447 VAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSF  526 (677)
Q Consensus       447 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l  526 (677)
                                                                   |+.|++++|++++ +|..+..+++|++|++++|++
T Consensus       274 ---------------------------------------------L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l  307 (390)
T 3o6n_A          274 ---------------------------------------------LERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHL  307 (390)
T ss_dssp             ---------------------------------------------CCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCC
T ss_pred             ---------------------------------------------CCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcc
Confidence                                                         3667777777664 455667889999999999999


Q ss_pred             eeecccccccCCCCcEEECCCCcccccCccccccCCCCCEEEcccCcccccCC
Q 048402          527 TGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLSNNKLTGKIP  579 (677)
Q Consensus       527 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p  579 (677)
                      + .+|..+..+++|++|++++|+++.. |  +..+++|+.|++++|++.|...
T Consensus       308 ~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~~  356 (390)
T 3o6n_A          308 L-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSL  356 (390)
T ss_dssp             C-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHH
T ss_pred             e-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccchhH
Confidence            8 6777788999999999999999854 3  7788999999999999988643

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=2.1e-32  Score=301.42  Aligned_cols=333  Identities=19%  Similarity=0.212  Sum_probs=203.4

Q ss_pred             CCCCCEEEccccccccccChhhhhCCCCCCEEEeeccccceecCCCCCCCcCccEEEeecccCCCCCChhccCCCCCCEE
Q 048402          128 LSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYL  207 (677)
Q Consensus       128 l~~L~~L~L~~n~i~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L  207 (677)
                      +.+++.+++++|.+. .+|...|.++++|+.|++++|.+.+..+..|..+++|+.|++++|.+.+..|..|+.+++|++|
T Consensus        50 l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  128 (597)
T 3oja_B           50 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  128 (597)
T ss_dssp             GCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence            567777888777776 6666667778888888887777776555555555555555555555555555555555555555


Q ss_pred             EccCCCCCCccchHHHhccCCccEEECCCccCccccCCccccccccEEEcccCCCCCCCCCCCCCccEEEccCCcccccC
Q 048402          208 NLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNNMSGPLPLISSNLVYLDLSNNSFSGSV  287 (677)
Q Consensus       208 ~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~  287 (677)
                      ++++|.+++..+. .+..                                                              
T Consensus       129 ~L~~n~l~~l~~~-~~~~--------------------------------------------------------------  145 (597)
T 3oja_B          129 VLERNDLSSLPRG-IFHN--------------------------------------------------------------  145 (597)
T ss_dssp             ECCSSCCCCCCTT-TTTT--------------------------------------------------------------
T ss_pred             EeeCCCCCCCCHH-Hhcc--------------------------------------------------------------
Confidence            5555555443221 1122                                                              


Q ss_pred             ChhHhhccCCCCCcCeEecCCCCCcccCCcccccCCCCceecccCccccccCCcCcCCCCCccEEECcCCcccccCCccC
Q 048402          288 SHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSL  367 (677)
Q Consensus       288 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~  367 (677)
                                +++|+.|++++|.+.+..|..|..+++|++|++++|.+++. +  +..+++|+.|++++|.+++     +
T Consensus       146 ----------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~--~~~l~~L~~L~l~~n~l~~-----l  207 (597)
T 3oja_B          146 ----------TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-D--LSLIPSLFHANVSYNLLST-----L  207 (597)
T ss_dssp             ----------CTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC-C--GGGCTTCSEEECCSSCCSE-----E
T ss_pred             ----------CCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc-C--hhhhhhhhhhhcccCcccc-----c
Confidence                      23333333333333333333444444444444444444432 1  3334455555555554442     1


Q ss_pred             cCCCCCCEEecCCCcccccCChhhhhccCCceEEEcCCCcccccCCccccCCCCCCEEeCCCCcCCCCcCccccccccCc
Q 048402          368 KNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMV  447 (677)
Q Consensus       368 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~  447 (677)
                      ...++|+.|++++|.+. .++...   .++|+.|++++|.+++  +..+..+++|+.|++++|.+.+..|..+..+++| 
T Consensus       208 ~~~~~L~~L~ls~n~l~-~~~~~~---~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L-  280 (597)
T 3oja_B          208 AIPIAVEELDASHNSIN-VVRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRL-  280 (597)
T ss_dssp             ECCTTCSEEECCSSCCC-EEECSC---CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSC-
T ss_pred             cCCchhheeeccCCccc-cccccc---CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCC-
Confidence            22345556666665554 222221   2456666666666664  2456666777777777777766656555544433 


Q ss_pred             cccccCcccCccCCCCCCCcccccceeeEeecCCchhhhhhhccccEEEcccCcccccCCcccCCCCCCcEEeccCCcce
Q 048402          448 AANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFT  527 (677)
Q Consensus       448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~  527 (677)
                                                                   +.|++++|.+++ +|..+..+++|+.|+|++|.++
T Consensus       281 ---------------------------------------------~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~  314 (597)
T 3oja_B          281 ---------------------------------------------ERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL  314 (597)
T ss_dssp             ---------------------------------------------CEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC
T ss_pred             ---------------------------------------------CEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC
Confidence                                                         677777777775 4566678899999999999999


Q ss_pred             eecccccccCCCCcEEECCCCcccccCccccccCCCCCEEEcccCcccccCCCCCCCCCcCcccccCC-CCCCC
Q 048402          528 GRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLSNNKLTGKIPSSTQLQSFDASSFTGN-DLCGA  600 (677)
Q Consensus       528 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n-~l~~~  600 (677)
                       .+|..+..+++|+.|++++|.+++. |  +..+++|+.|++++|++.|.++.. .+..+....+.++ ..|+.
T Consensus       315 -~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~~~~~-~~~~~~~~~~~~~~~~C~~  383 (597)
T 3oja_B          315 -HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLRA-LFRNVARPAVDDADQHCKI  383 (597)
T ss_dssp             -CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHHH-HTTTCCTTTBCCCCCCCCT
T ss_pred             -ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCChhHHH-HHHHHhhhccccccccCCc
Confidence             6888889999999999999999854 3  677899999999999999875432 2334444444444 45554

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=8.9e-32  Score=296.44  Aligned_cols=311  Identities=21%  Similarity=0.223  Sum_probs=215.9

Q ss_pred             CCCCCCEEEccCCcCCcccchhhhhccccCcCCccEEEcccCcCccccccccCCCCCCCEEECcCCccccCCCcCCCCCC
Q 048402           50 SLCNLKSINLRGVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLS  129 (677)
Q Consensus        50 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  129 (677)
                      .+++++.+++++|.+...++..+..++     +|++|++++|.+++..|..|..+++|++|++++|.+++..|..|++++
T Consensus        49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~-----~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  123 (597)
T 3oja_B           49 TLNNQKIVTFKNSTMRKLPAALLDSFR-----QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP  123 (597)
T ss_dssp             GGCCCSEEEESSCEESEECTHHHHHCC-----CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             cCCCceEEEeeCCCCCCcCHHHHccCC-----CCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCC
Confidence            457888999998888877777788888     899999999988887777888899999999999988887777888889


Q ss_pred             CCCEEEccccccccccChhhhhCCCCCCEEEeeccccceecCCCCCCCcCccEEEeecccCCCCCChhccCCCCCCEEEc
Q 048402          130 NLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNL  209 (677)
Q Consensus       130 ~L~~L~L~~n~i~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l  209 (677)
                      +|++|++++|.++ .+|...|.++++|+.|++++|.+.+.                        .|..+..+++|++|++
T Consensus       124 ~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~------------------------~~~~~~~l~~L~~L~L  178 (597)
T 3oja_B          124 LLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERI------------------------EDDTFQATTSLQNLQL  178 (597)
T ss_dssp             TCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBC------------------------CTTTTTTCTTCCEEEC
T ss_pred             CCCEEEeeCCCCC-CCCHHHhccCCCCCEEEeeCCcCCCC------------------------ChhhhhcCCcCcEEEC
Confidence            9999999988887 66665678888888888887776644                        3444555666666666


Q ss_pred             cCCCCCCccchHHHhccCCccEEECCCccCccccCCccccccccEEEcccCCCCCCCCCCCCCccEEEccCCcccccCCh
Q 048402          210 LNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNNMSGPLPLISSNLVYLDLSNNSFSGSVSH  289 (677)
Q Consensus       210 ~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  289 (677)
                      ++|.+++...    ..+++|+.|++++|.+.+..    ..+.|+.|++++|.+....+..                    
T Consensus       179 ~~N~l~~~~~----~~l~~L~~L~l~~n~l~~l~----~~~~L~~L~ls~n~l~~~~~~~--------------------  230 (597)
T 3oja_B          179 SSNRLTHVDL----SLIPSLFHANVSYNLLSTLA----IPIAVEELDASHNSINVVRGPV--------------------  230 (597)
T ss_dssp             TTSCCSBCCG----GGCTTCSEEECCSSCCSEEE----CCTTCSEEECCSSCCCEEECSC--------------------
T ss_pred             cCCCCCCcCh----hhhhhhhhhhcccCcccccc----CCchhheeeccCCccccccccc--------------------
Confidence            6666655421    23456666666666655321    1123444444444333222222                    


Q ss_pred             hHhhccCCCCCcCeEecCCCCCcccCCcccccCCCCceecccCccccccCCcCcCCCCCccEEECcCCcccccCCccCcC
Q 048402          290 YLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKN  369 (677)
Q Consensus       290 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~  369 (677)
                              .++|+.|++++|.+++  +..+..+++|+.|++++|.+.+..|..|..+++|+.|++++|.+++ +|..+..
T Consensus       231 --------~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~  299 (597)
T 3oja_B          231 --------NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQP  299 (597)
T ss_dssp             --------CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSC
T ss_pred             --------CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCccccc
Confidence                    2455566666665553  2456667777777777777776667777777777777777777765 3455566


Q ss_pred             CCCCCEEecCCCcccccCChhhhhccCCceEEEcCCCcccccCCccccCCCCCCEEeCCCCcCCC
Q 048402          370 CTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFG  434 (677)
Q Consensus       370 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~  434 (677)
                      +++|+.|++++|.+. .+|..+. .+++|+.|++++|.+++. +  +..+++|+.|++++|++.+
T Consensus       300 l~~L~~L~Ls~N~l~-~i~~~~~-~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~  359 (597)
T 3oja_B          300 IPTLKVLDLSHNHLL-HVERNQP-QFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDC  359 (597)
T ss_dssp             CTTCCEEECCSSCCC-CCGGGHH-HHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEH
T ss_pred             CCCCcEEECCCCCCC-ccCcccc-cCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCC
Confidence            777777777777776 5666554 577788888888877743 2  5667788888888887753

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=8e-33  Score=278.93  Aligned_cols=255  Identities=26%  Similarity=0.408  Sum_probs=227.9

Q ss_pred             CCccEEEccCCcccc--cCChhHhhccCCCCCcCeEecCC-CCCcccCCcccccCCCCceecccCccccccCCcCcCCCC
Q 048402          271 SNLVYLDLSNNSFSG--SVSHYLCYRINEPKSLIGLKLKD-NSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLT  347 (677)
Q Consensus       271 ~~L~~L~l~~n~l~~--~~~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  347 (677)
                      .+++.|++++|.+++  .+|..+..    +++|++|++++ |.+.+.+|..|..+++|++|++++|.+++..|..|..++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~----l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~  125 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLAN----LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIK  125 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGG----CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCT
T ss_pred             ceEEEEECCCCCccCCcccChhHhC----CCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCC
Confidence            468888888888887  66665544    89999999995 999989999999999999999999999989999999999


Q ss_pred             CccEEECcCCcccccCCccCcCCCCCCEEecCCCcccccCChhhhhccC-CceEEEcCCCcccccCCccccCCCCCCEEe
Q 048402          348 SLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFS-RMVVLILRSNNFHGPLPTRLCDLAFLQILD  426 (677)
Q Consensus       348 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  426 (677)
                      +|++|++++|.+++..|..+..+++|++|++++|++.+.+|..+. .++ .|++|++++|.+++.+|..+..++ |++|+
T Consensus       126 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~-~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~  203 (313)
T 1ogq_A          126 TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG-SFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVD  203 (313)
T ss_dssp             TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGG-CCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEE
T ss_pred             CCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHh-hhhhcCcEEECcCCeeeccCChHHhCCc-ccEEE
Confidence            999999999999999999999999999999999999989998877 566 999999999999999999999887 99999


Q ss_pred             CCCCcCCCCcCccccccccCccccccCcccCccCCCCCCCcccccceeeEeecCCchhhhhhhccccEEEcccCcccccC
Q 048402          427 LADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSI  506 (677)
Q Consensus       427 Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  506 (677)
                      +++|++.+..|..+..+++                                              |+.|++++|.+++.+
T Consensus       204 Ls~N~l~~~~~~~~~~l~~----------------------------------------------L~~L~L~~N~l~~~~  237 (313)
T 1ogq_A          204 LSRNMLEGDASVLFGSDKN----------------------------------------------TQKIHLAKNSLAFDL  237 (313)
T ss_dssp             CCSSEEEECCGGGCCTTSC----------------------------------------------CSEEECCSSEECCBG
T ss_pred             CcCCcccCcCCHHHhcCCC----------------------------------------------CCEEECCCCceeeec
Confidence            9999998777776665544                                              499999999999766


Q ss_pred             CcccCCCCCCcEEeccCCcceeecccccccCCCCcEEECCCCcccccCccccccCCCCCEEEcccCcccccCC
Q 048402          507 PLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLSNNKLTGKIP  579 (677)
Q Consensus       507 ~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p  579 (677)
                      |. +..+++|++|++++|++++.+|..+..+++|++|++++|++++.+|.. ..+++|+.+++++|+..|..|
T Consensus       238 ~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~p  308 (313)
T 1ogq_A          238 GK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSP  308 (313)
T ss_dssp             GG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEESTT
T ss_pred             Cc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccCCC
Confidence            65 888999999999999999999999999999999999999999999986 889999999999999655444

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=3e-31  Score=272.63  Aligned_cols=306  Identities=22%  Similarity=0.303  Sum_probs=156.7

Q ss_pred             cCCCCCCEEecCCCCCCCccCchhhcCCCCCCEEEccCCcCCcccchhhhhccccCcCCccEEEcccCcCccccccccCC
Q 048402           24 GNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQ  103 (677)
Q Consensus        24 ~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~  103 (677)
                      ..+++|++|+++ ++.+.. ++ .+..+++|++|++++|.+++..+  +..++     +|++|++++|.++.. + .+.+
T Consensus        41 ~~l~~L~~L~l~-~~~i~~-~~-~~~~~~~L~~L~l~~n~i~~~~~--~~~l~-----~L~~L~L~~n~i~~~-~-~~~~  108 (347)
T 4fmz_A           41 EELESITKLVVA-GEKVAS-IQ-GIEYLTNLEYLNLNGNQITDISP--LSNLV-----KLTNLYIGTNKITDI-S-ALQN  108 (347)
T ss_dssp             HHHTTCSEEECC-SSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCT-----TCCEEECCSSCCCCC-G-GGTT
T ss_pred             hhcccccEEEEe-CCcccc-ch-hhhhcCCccEEEccCCccccchh--hhcCC-----cCCEEEccCCcccCc-h-HHcC
Confidence            345556666665 333332 22 25555556666665555554333  44444     555555555555532 2 3555


Q ss_pred             CCCCCEEECcCCccccCCCcCCCCCCCCCEEEccccccccccChhhhhCCCCCCEEEeeccccceecCCCCCCCcCccEE
Q 048402          104 FKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQLVAL  183 (677)
Q Consensus       104 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L  183 (677)
                      +++|++|++++|.+.+. +. +..+++|++|++++|.....++  .+.++++|+.|++++|.+....             
T Consensus       109 l~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~-------------  171 (347)
T 4fmz_A          109 LTNLRELYLNEDNISDI-SP-LANLTKMYSLNLGANHNLSDLS--PLSNMTGLNYLTVTESKVKDVT-------------  171 (347)
T ss_dssp             CTTCSEEECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCCG--GGTTCTTCCEEECCSSCCCCCG-------------
T ss_pred             CCcCCEEECcCCcccCc-hh-hccCCceeEEECCCCCCccccc--chhhCCCCcEEEecCCCcCCch-------------
Confidence            55555555555555532 22 5555555555555554332222  2455555555555554443221             


Q ss_pred             EeecccCCCCCChhccCCCCCCEEEccCCCCCCccchHHHhccCCccEEECCCccCccccCCccccccccEEEcccCCCC
Q 048402          184 GFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNNMS  263 (677)
Q Consensus       184 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~  263 (677)
                                 +  +..+++|++|++++|.+.+..+   +..+++|+.+++++|.+.+..+ +..               
T Consensus       172 -----------~--~~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~-~~~---------------  219 (347)
T 4fmz_A          172 -----------P--IANLTDLYSLSLNYNQIEDISP---LASLTSLHYFTAYVNQITDITP-VAN---------------  219 (347)
T ss_dssp             -----------G--GGGCTTCSEEECTTSCCCCCGG---GGGCTTCCEEECCSSCCCCCGG-GGG---------------
T ss_pred             -----------h--hccCCCCCEEEccCCccccccc---ccCCCccceeecccCCCCCCch-hhc---------------
Confidence                       1  3444555555555555544322   2334455555555554443222 222               


Q ss_pred             CCCCCCCCCccEEEccCCcccccCChhHhhccCCCCCcCeEecCCCCCcccCCcccccCCCCceecccCccccccCCcCc
Q 048402          264 GPLPLISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSL  343 (677)
Q Consensus       264 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  343 (677)
                            +++|++|++++|.+++..+      +..+++|++|++++|.+++.  +.+..+++|++|++++|.+++.  ..+
T Consensus       220 ------~~~L~~L~l~~n~l~~~~~------~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~  283 (347)
T 4fmz_A          220 ------MTRLNSLKIGNNKITDLSP------LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVL  283 (347)
T ss_dssp             ------CTTCCEEECCSSCCCCCGG------GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGG
T ss_pred             ------CCcCCEEEccCCccCCCcc------hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhh
Confidence                  3344444444444433221      23355666666666655532  3455666666666666666643  345


Q ss_pred             CCCCCccEEECcCCcccccCCccCcCCCCCCEEecCCCcccccCChhhhhccCCceEEEcCCCccc
Q 048402          344 GSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFH  409 (677)
Q Consensus       344 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~  409 (677)
                      ..+++|+.|++++|++++..+..+..+++|++|++++|++.+..|  + ..+++|++|++++|.++
T Consensus       284 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~-~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          284 NNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--L-ASLSKMDSADFANQVIK  346 (347)
T ss_dssp             GGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--G-GGCTTCSEESSSCC---
T ss_pred             cCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--h-hhhhccceeehhhhccc
Confidence            666666666666666666666666666666667776666664333  2 24666777777766654

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.98  E-value=9e-31  Score=269.09  Aligned_cols=304  Identities=22%  Similarity=0.276  Sum_probs=225.9

Q ss_pred             CCcccEEEccCCCCceecCCccccCCCCCCEEecCCCCCCCccCchhhcCCCCCCEEEccCCcCCcccchhhhhccccCc
Q 048402            1 FIHLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVS   80 (677)
Q Consensus         1 ~~~L~~L~Ls~n~~~~~i~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~   80 (677)
                      +++|++|+++++.+. .+  +.+..+++|++|+++ ++.+.+. +. +..+++|++|++++|.+++.  +.+..++    
T Consensus        43 l~~L~~L~l~~~~i~-~~--~~~~~~~~L~~L~l~-~n~i~~~-~~-~~~l~~L~~L~L~~n~i~~~--~~~~~l~----  110 (347)
T 4fmz_A           43 LESITKLVVAGEKVA-SI--QGIEYLTNLEYLNLN-GNQITDI-SP-LSNLVKLTNLYIGTNKITDI--SALQNLT----  110 (347)
T ss_dssp             HTTCSEEECCSSCCC-CC--TTGGGCTTCCEEECC-SSCCCCC-GG-GTTCTTCCEEECCSSCCCCC--GGGTTCT----
T ss_pred             cccccEEEEeCCccc-cc--hhhhhcCCccEEEcc-CCccccc-hh-hhcCCcCCEEEccCCcccCc--hHHcCCC----
Confidence            368999999999997 66  348899999999999 6676654 43 89999999999999999864  3577888    


Q ss_pred             CCccEEEcccCcCccccccccCCCCCCCEEECcCCccccCCCcCCCCCCCCCEEEccccccccccChhhhhCCCCCCEEE
Q 048402           81 IELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFR  160 (677)
Q Consensus        81 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~l~~~~~~~l~~L~~L~  160 (677)
                       +|++|++++|.+++..+  +..+++|++|++++|..... +..+..+++|++|++++|.+. .++.  +.++++|+.|+
T Consensus       111 -~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~-~~~~~~l~~L~~L~l~~~~~~-~~~~--~~~l~~L~~L~  183 (347)
T 4fmz_A          111 -NLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSD-LSPLSNMTGLNYLTVTESKVK-DVTP--IANLTDLYSLS  183 (347)
T ss_dssp             -TCSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCC-CGGGTTCTTCCEEECCSSCCC-CCGG--GGGCTTCSEEE
T ss_pred             -cCCEEECcCCcccCchh--hccCCceeEEECCCCCCccc-ccchhhCCCCcEEEecCCCcC-Cchh--hccCCCCCEEE
Confidence             99999999999996544  89999999999999976544 445999999999999999987 4443  88999999999


Q ss_pred             eeccccceecCCCCCCCcCccEEEeecccCCCCCChhccCCCCCCEEEccCCCCCCccchHHHhccCCccEEECCCccCc
Q 048402          161 VGGNKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFH  240 (677)
Q Consensus       161 l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~  240 (677)
                      +++|.+.....  +..+++|+.+++++|.+....+  +..+++|++|++++|.+++..+   +..+++|++|++++|.++
T Consensus       184 l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~  256 (347)
T 4fmz_A          184 LNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP---LANLSQLTWLEIGTNQIS  256 (347)
T ss_dssp             CTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCC
T ss_pred             ccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc---hhcCCCCCEEECCCCccC
Confidence            99998875443  5556666666666666554433  5556666666666666655433   334555666666655554


Q ss_pred             cccCCccccccccEEEcccCCCCCCCCCCCCCccEEEccCCcccccCChhHhhccCCCCCcCeEecCCCCCcccCCcccc
Q 048402          241 GQITDLTKVTQLLFLSVHSNNMSGPLPLISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWM  320 (677)
Q Consensus       241 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~  320 (677)
                      +. +.+..                     +++|++|++++|.+++. +     .+..+++|++|++++|.+.+..+..+.
T Consensus       257 ~~-~~~~~---------------------l~~L~~L~l~~n~l~~~-~-----~~~~l~~L~~L~L~~n~l~~~~~~~l~  308 (347)
T 4fmz_A          257 DI-NAVKD---------------------LTKLKMLNVGSNQISDI-S-----VLNNLSQLNSLFLNNNQLGNEDMEVIG  308 (347)
T ss_dssp             CC-GGGTT---------------------CTTCCEEECCSSCCCCC-G-----GGGGCTTCSEEECCSSCCCGGGHHHHH
T ss_pred             CC-hhHhc---------------------CCCcCEEEccCCccCCC-h-----hhcCCCCCCEEECcCCcCCCcChhHhh
Confidence            32 22222                     45666677777766653 1     233478888888888888877778888


Q ss_pred             cCCCCceecccCccccccCCcCcCCCCCccEEECcCCccc
Q 048402          321 SYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLS  360 (677)
Q Consensus       321 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~  360 (677)
                      .+++|++|++++|++++..|  +..+++|+.|++++|.++
T Consensus       309 ~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          309 GLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             TCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             ccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence            88888888888888886555  778888888888888875

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=1.2e-34  Score=310.54  Aligned_cols=387  Identities=20%  Similarity=0.185  Sum_probs=254.7

Q ss_pred             CCcccEEEccCCCCceecCCccccCCCCCCEEecCCCCCCCc----cCchhhcCCCCCCEEEccCCcCCcccchhhhh-c
Q 048402            1 FIHLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEG----RIPRSMASLCNLKSINLRGVHLSQEISEILNI-F   75 (677)
Q Consensus         1 ~~~L~~L~Ls~n~~~~~i~~~~~~~l~~L~~L~Ls~~~~~~~----~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-l   75 (677)
                      .++|++|+|++|.++.......+..+++|++|+++ ++.+..    .++..+..+++|++|++++|.+.+..+..+.. +
T Consensus         2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l   80 (461)
T 1z7x_W            2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLD-DCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGL   80 (461)
T ss_dssp             CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEE-SSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred             CccceehhhhhcccCchhHHHHHhhcCCccEEEcc-CCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHH
Confidence            36799999999998743312337789999999999 676663    45778889999999999999998765555443 3


Q ss_pred             cccCcCCccEEEcccCcCcc----ccccccCCCCCCCEEECcCCccccCCCcC-----CCCCCCCCEEEccccccccc--
Q 048402           76 SGCVSIELESLDLRSSSISG----HLTDQLGQFKNLDNLDLANNSIVGPIPQS-----LGHLSNLRVLQIYNNKLNGT--  144 (677)
Q Consensus        76 ~~~~~~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-----~~~l~~L~~L~L~~n~i~~~--  144 (677)
                      ... ..+|++|++++|.++.    .++..+..+++|++|++++|.++...+..     ....++|++|++++|.+++.  
T Consensus        81 ~~~-~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~  159 (461)
T 1z7x_W           81 QTP-SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASC  159 (461)
T ss_dssp             CST-TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH
T ss_pred             hhC-CCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHH
Confidence            311 1159999999999984    46888999999999999999987543433     23467899999999998743  


Q ss_pred             --cChhhhhCCCCCCEEEeeccccceecCCCCC-----CCcCccEEEeecccCCCC----CChhccCCCCCCEEEccCCC
Q 048402          145 --LSEIHFSNLTKLSWFRVGGNKLTLEVRHDWI-----PPFQLVALGFHNCYVGSR----FPQWLHSQKHLQYLNLLNSG  213 (677)
Q Consensus       145 --l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-----~~~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~  213 (677)
                        ++. .+..+++|+.|++++|.+.......+.     ..++|+.|++++|.+...    ++..+..+++|++|++++|.
T Consensus       160 ~~l~~-~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~  238 (461)
T 1z7x_W          160 EPLAS-VLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK  238 (461)
T ss_dssp             HHHHH-HHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB
T ss_pred             HHHHH-HHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc
Confidence              233 577889999999999988754333322     234667777777666553    35555566666677776666


Q ss_pred             CCCccchHH----HhccCCccEEECCCccCccc-----cCCccccccccEEEcccCCCCCCCCCCCCCccEEEccCCccc
Q 048402          214 MSDLFPIRF----LKSAFQLKFLDLGLNQFHGQ-----ITDLTKVTQLLFLSVHSNNMSGPLPLISSNLVYLDLSNNSFS  284 (677)
Q Consensus       214 i~~~~~~~~----~~~~~~L~~L~Ls~n~l~~~-----~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~  284 (677)
                      +++.....+    ...+++|++|++++|.++..     ...+..                     +++|++|++++|.+.
T Consensus       239 l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~---------------------~~~L~~L~Ls~n~i~  297 (461)
T 1z7x_W          239 LGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRA---------------------KESLKELSLAGNELG  297 (461)
T ss_dssp             CHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHH---------------------CTTCCEEECTTCCCH
T ss_pred             CChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhh---------------------CCCcceEECCCCCCc
Confidence            654322221    12345666666666655542     111222                     345666666666665


Q ss_pred             ccCChhHhhccC-CCCCcCeEecCCCCCccc----CCcccccCCCCceecccCccccccCCcCcCC-----CCCccEEEC
Q 048402          285 GSVSHYLCYRIN-EPKSLIGLKLKDNSLQGE----IPDCWMSYQNLEILELSNNKFTGKLPNSLGS-----LTSLIWLLL  354 (677)
Q Consensus       285 ~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-----l~~L~~L~l  354 (677)
                      +..+..+...+. ..++|++|++++|.+++.    ++..+..+++|++|++++|.+++..+..+..     .++|++|++
T Consensus       298 ~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L  377 (461)
T 1z7x_W          298 DEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWL  377 (461)
T ss_dssp             HHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred             hHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEEC
Confidence            444334433322 125677777777776654    3445566677777777777776544433322     567888888


Q ss_pred             cCCcccc----cCCccCcCCCCCCEEecCCCcccccCChhhhh----ccCCceEEEcCCCccccc
Q 048402          355 GKNRLSG----TIPVSLKNCTALESLDVGENEFVGNIPTWTGE----RFSRMVVLILRSNNFHGP  411 (677)
Q Consensus       355 ~~n~~~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~----~l~~L~~L~L~~n~l~~~  411 (677)
                      ++|++++    .++..+..+++|++|++++|++.+.....+..    ....|+.|.+.++.+...
T Consensus       378 ~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~  442 (461)
T 1z7x_W          378 ADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEE  442 (461)
T ss_dssp             TTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHH
T ss_pred             CCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHH
Confidence            8887775    55666777788888888888776432222221    234577777777766543

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=3e-33  Score=299.60  Aligned_cols=161  Identities=22%  Similarity=0.161  Sum_probs=71.9

Q ss_pred             CccEEEccCCcccccCChhHhhccCCCCCcCeEecCCCCCcccCCcccc-----cCCCCceecccCcccccc----CCcC
Q 048402          272 NLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWM-----SYQNLEILELSNNKFTGK----LPNS  342 (677)
Q Consensus       272 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~L~~n~l~~~----~~~~  342 (677)
                      +|++|++++|.+++.....+...+..+++|++|++++|.+.+..+..+.     ..++|++|++++|.+++.    ++..
T Consensus       143 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~  222 (461)
T 1z7x_W          143 RLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGI  222 (461)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHH
T ss_pred             cceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHH
Confidence            4555555555554433333333333345555555555555433222222     133555555555555432    2334


Q ss_pred             cCCCCCccEEECcCCcccccC-----CccCcCCCCCCEEecCCCccccc----CChhhhhccCCceEEEcCCCcccccCC
Q 048402          343 LGSLTSLIWLLLGKNRLSGTI-----PVSLKNCTALESLDVGENEFVGN----IPTWTGERFSRMVVLILRSNNFHGPLP  413 (677)
Q Consensus       343 ~~~l~~L~~L~l~~n~~~~~~-----~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~  413 (677)
                      +..+++|++|++++|+++...     +..+..+++|++|++++|.+++.    ++..+. .+++|++|++++|.+.+..+
T Consensus       223 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~-~~~~L~~L~Ls~n~i~~~~~  301 (461)
T 1z7x_W          223 VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLR-AKESLKELSLAGNELGDEGA  301 (461)
T ss_dssp             HHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHH-HCTTCCEEECTTCCCHHHHH
T ss_pred             HHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHh-hCCCcceEECCCCCCchHHH
Confidence            444555555555555544321     11122345555555555555422    222222 34555555555555542221


Q ss_pred             cccc-----CCCCCCEEeCCCCcCC
Q 048402          414 TRLC-----DLAFLQILDLADNNLF  433 (677)
Q Consensus       414 ~~~~-----~l~~L~~L~Ls~n~l~  433 (677)
                      ..+.     ..++|++|++++|.++
T Consensus       302 ~~l~~~l~~~~~~L~~L~L~~n~l~  326 (461)
T 1z7x_W          302 RLLCETLLEPGCQLESLWVKSCSFT  326 (461)
T ss_dssp             HHHHHHHTSTTCCCCEEECTTSCCB
T ss_pred             HHHHHHhccCCccceeeEcCCCCCc
Confidence            1111     1245555555555543

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=1.3e-29  Score=258.47  Aligned_cols=244  Identities=20%  Similarity=0.227  Sum_probs=128.7

Q ss_pred             CCccEEEccCCcccccCChhHhhccCCCCCcCeEecCCCCCcccCCcccccCCCCceecccCccccccCCcCcCCCCCcc
Q 048402          271 SNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLI  350 (677)
Q Consensus       271 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  350 (677)
                      ++|++|++++|.+++..+..    +..+++|++|++++|.+. .+|..+.  ++|++|++++|.+.+..+..|..+++|+
T Consensus        78 ~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~  150 (332)
T 2ft3_A           78 QHLYALVLVNNKISKIHEKA----FSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMN  150 (332)
T ss_dssp             TTCCEEECCSSCCCEECGGG----STTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCC
T ss_pred             CCCcEEECCCCccCccCHhH----hhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCC
Confidence            34444444444444333332    223555555555555555 2333222  4555666666655544444455556666


Q ss_pred             EEECcCCccc--ccCCccCcCCCCCCEEecCCCcccccCChhhhhccCCceEEEcCCCcccccCCccccCCCCCCEEeCC
Q 048402          351 WLLLGKNRLS--GTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLA  428 (677)
Q Consensus       351 ~L~l~~n~~~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  428 (677)
                      .|++++|.++  +..+..+..+ +|++|++++|.+. .+|..++   ++|++|++++|.+++..+..+..+++|+.|+++
T Consensus       151 ~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~-~l~~~~~---~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~  225 (332)
T 2ft3_A          151 CIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT-GIPKDLP---ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLG  225 (332)
T ss_dssp             EEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS-SCCSSSC---SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCC
T ss_pred             EEECCCCccccCCCCcccccCC-ccCEEECcCCCCC-ccCcccc---CCCCEEECCCCcCCccCHHHhcCCCCCCEEECC
Confidence            6666666553  2444455555 5666666666555 3444332   455566666666655555555556666666666


Q ss_pred             CCcCCCCcCccccccccCccccccCcccCccCCCCCCCcccccceeeEeecCCchhhhhhhccccEEEcccCcccccCCc
Q 048402          429 DNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPL  508 (677)
Q Consensus       429 ~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~  508 (677)
                      +|++.+..|..+..+                                              ++|+.|++++|+++ .+|.
T Consensus       226 ~N~l~~~~~~~~~~l----------------------------------------------~~L~~L~L~~N~l~-~lp~  258 (332)
T 2ft3_A          226 HNQIRMIENGSLSFL----------------------------------------------PTLRELHLDNNKLS-RVPA  258 (332)
T ss_dssp             SSCCCCCCTTGGGGC----------------------------------------------TTCCEEECCSSCCC-BCCT
T ss_pred             CCcCCcCChhHhhCC----------------------------------------------CCCCEEECCCCcCe-ecCh
Confidence            665554443333332                                              23366666666665 4555


Q ss_pred             ccCCCCCCcEEeccCCcceeecccccccC------CCCcEEECCCCccc--ccCccccccCCCCCEEEcccCc
Q 048402          509 EMTNLKATQSLNFSHNSFTGRIPESIGAM------RSLESIDFSVNQLS--GEIPQSMSNLMSLNHLNLSNNK  573 (677)
Q Consensus       509 ~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l------~~L~~L~Ls~N~l~--~~~p~~l~~l~~L~~L~ls~N~  573 (677)
                      .+..+++|++|++++|++++..+..|...      .+|+.|++++|.+.  ...|.+|..+++|+.+++++|+
T Consensus       259 ~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          259 GLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             TGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             hhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence            56666666666666666664444444432      45666666666655  4455556666666666666553

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=2.4e-29  Score=256.33  Aligned_cols=247  Identities=17%  Similarity=0.241  Sum_probs=121.3

Q ss_pred             CCccEEEccCCcccccCChhHhhccCCCCCcCeEecCCCCCcccCCcccccCCCCceecccCccccccCCcCcCCCCCcc
Q 048402          271 SNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLI  350 (677)
Q Consensus       271 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  350 (677)
                      ++++.|++++|.+++..+..    +..+++|++|++++|.+++..|..|..+++|++|++++|.++ .+|..+.  ++|+
T Consensus        52 ~~l~~L~L~~n~i~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~  124 (330)
T 1xku_A           52 PDTALLDLQNNKITEIKDGD----FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQ  124 (330)
T ss_dssp             TTCCEEECCSSCCCCBCTTT----TTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCC
T ss_pred             CCCeEEECCCCcCCEeChhh----hccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--cccc
Confidence            34444444444444433322    222455555555555555444555555555555555555555 2333322  4555


Q ss_pred             EEECcCCcccccCCccCcCCCCCCEEecCCCcccc--cCChhhhhccCCceEEEcCCCcccccCCccccCCCCCCEEeCC
Q 048402          351 WLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVG--NIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLA  428 (677)
Q Consensus       351 ~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  428 (677)
                      +|++++|++++..+..|.++++|++|++++|.+..  ..+..+ ..+++|++|++++|.++. +|..+.  ++|++|+++
T Consensus       125 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~  200 (330)
T 1xku_A          125 ELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF-QGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLD  200 (330)
T ss_dssp             EEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGG-GGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECT
T ss_pred             EEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhc-cCCCCcCEEECCCCcccc-CCcccc--ccCCEEECC
Confidence            55555555554444445555555555555555531  222222 245555555555555552 333222  455555555


Q ss_pred             CCcCCCCcCccccccccCccccccCcccCccCCCCCCCcccccceeeEeecCCchhhhhhhccccEEEcccCcccccCCc
Q 048402          429 DNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPL  508 (677)
Q Consensus       429 ~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~  508 (677)
                      +|++.+..|..+..+++                                              |+.|++++|.+++..+.
T Consensus       201 ~n~l~~~~~~~~~~l~~----------------------------------------------L~~L~Ls~n~l~~~~~~  234 (330)
T 1xku_A          201 GNKITKVDAASLKGLNN----------------------------------------------LAKLGLSFNSISAVDNG  234 (330)
T ss_dssp             TSCCCEECTGGGTTCTT----------------------------------------------CCEEECCSSCCCEECTT
T ss_pred             CCcCCccCHHHhcCCCC----------------------------------------------CCEEECCCCcCceeChh
Confidence            55554433433333222                                              25555555555554444


Q ss_pred             ccCCCCCCcEEeccCCcceeecccccccCCCCcEEECCCCcccccCcccccc------CCCCCEEEcccCccc
Q 048402          509 EMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSN------LMSLNHLNLSNNKLT  575 (677)
Q Consensus       509 ~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~------l~~L~~L~ls~N~l~  575 (677)
                      .+..+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..|..      .+.++.+++++|++.
T Consensus       235 ~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~  306 (330)
T 1xku_A          235 SLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ  306 (330)
T ss_dssp             TGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             hccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCccc
Confidence            5555555555555555555 44555555555555555555555444444432      244555555555553

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=3.1e-29  Score=255.41  Aligned_cols=285  Identities=19%  Similarity=0.195  Sum_probs=154.2

Q ss_pred             CccEEECCCccCccccCCccccccccEEEcccCCCCCCCCCC---CCCccEEEccCCcccccCChhHhhccCCCCCcCeE
Q 048402          228 QLKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNNMSGPLPLI---SSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGL  304 (677)
Q Consensus       228 ~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~---~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L  304 (677)
                      +++.++++++.++..+..+  .+.++.|++++|.+++..+..   +++|++|++++|.+++..|..+    ..+++|++|
T Consensus        32 ~l~~l~~~~~~l~~lp~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~----~~l~~L~~L  105 (330)
T 1xku_A           32 HLRVVQCSDLGLEKVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAF----APLVKLERL  105 (330)
T ss_dssp             ETTEEECTTSCCCSCCCSC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTT----TTCTTCCEE
T ss_pred             CCeEEEecCCCccccCccC--CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHh----cCCCCCCEE
Confidence            4566666666555433322  145566666666665544422   4556666666666655444432    235566666


Q ss_pred             ecCCCCCcccCCcccccCCCCceecccCccccccCCcCcCCCCCccEEECcCCcccc--cCCccCcCCCCCCEEecCCCc
Q 048402          305 KLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSG--TIPVSLKNCTALESLDVGENE  382 (677)
Q Consensus       305 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~l~~n~  382 (677)
                      ++++|.++ .+|..+.  ++|++|++++|.+++..+..|..+++|+.|++++|.+..  ..+..+.++++|++|++++|.
T Consensus       106 ~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~  182 (330)
T 1xku_A          106 YLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN  182 (330)
T ss_dssp             ECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC
T ss_pred             ECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc
Confidence            66666655 3333322  456666666666665555555666666666666665532  445555566666666666666


Q ss_pred             ccccCChhhhhccCCceEEEcCCCcccccCCccccCCCCCCEEeCCCCcCCCCcCccccccccCccccccCcccCccCCC
Q 048402          383 FVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPL  462 (677)
Q Consensus       383 l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~  462 (677)
                      +. .+|...   .++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+                   
T Consensus       183 l~-~l~~~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-------------------  239 (330)
T 1xku_A          183 IT-TIPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANT-------------------  239 (330)
T ss_dssp             CC-SCCSSC---CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGS-------------------
T ss_pred             cc-cCCccc---cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCC-------------------
Confidence            55 444433   2556666666666665555556666666666666666554333333332                   


Q ss_pred             CCCCcccccceeeEeecCCchhhhhhhccccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeeccccccc------
Q 048402          463 PLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGA------  536 (677)
Q Consensus       463 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~------  536 (677)
                                                 ++|++|++++|+++ .+|..+..+++|++|++++|++++..+..|..      
T Consensus       240 ---------------------------~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~  291 (330)
T 1xku_A          240 ---------------------------PHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTK  291 (330)
T ss_dssp             ---------------------------TTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTT
T ss_pred             ---------------------------CCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccc
Confidence                                       23356666666665 45555566666666666666666444444432      


Q ss_pred             CCCCcEEECCCCcccc--cCccccccCCCCCEEEcccC
Q 048402          537 MRSLESIDFSVNQLSG--EIPQSMSNLMSLNHLNLSNN  572 (677)
Q Consensus       537 l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~ls~N  572 (677)
                      .++|+.|++++|.+..  ..|..|..++.++.+++++|
T Consensus       292 ~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N  329 (330)
T 1xku_A          292 KASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY  329 (330)
T ss_dssp             SCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred             cccccceEeecCcccccccCccccccccceeEEEeccc
Confidence            2455666666666542  34455555666666666655

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=2.6e-29  Score=256.13  Aligned_cols=286  Identities=17%  Similarity=0.237  Sum_probs=208.5

Q ss_pred             cccEEEcccCCCCCCCCCCCCCccEEEccCCcccccCChhHhhccCCCCCcCeEecCCCCCcccCCcccccCCCCceecc
Q 048402          251 QLLFLSVHSNNMSGPLPLISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILEL  330 (677)
Q Consensus       251 ~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L  330 (677)
                      +++.++++++.++.......++++.|++++|.+++..+..+    ..+++|++|++++|.+++..|..|.++++|++|++
T Consensus        34 ~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~----~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  109 (332)
T 2ft3_A           34 HLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDF----KGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI  109 (332)
T ss_dssp             ETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTT----TTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred             cCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHh----hCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence            45666666666654443345678888888888876655433    44788889999988888777888888889999999


Q ss_pred             cCccccccCCcCcCCCCCccEEECcCCcccccCCccCcCCCCCCEEecCCCcccc--cCChhhhhccCCceEEEcCCCcc
Q 048402          331 SNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVG--NIPTWTGERFSRMVVLILRSNNF  408 (677)
Q Consensus       331 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~~l~~L~~L~L~~n~l  408 (677)
                      ++|.++ .+|..+.  ++|++|++++|++++..+..|.++++|++|++++|.+..  ..+..+. .+ +|++|++++|.+
T Consensus       110 ~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-~l-~L~~L~l~~n~l  184 (332)
T 2ft3_A          110 SKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFD-GL-KLNYLRISEAKL  184 (332)
T ss_dssp             CSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSC-SC-CCSCCBCCSSBC
T ss_pred             CCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCccccc-CC-ccCEEECcCCCC
Confidence            988888 4555444  788889999888887777778888888889988888852  3333332 44 888888888888


Q ss_pred             cccCCccccCCCCCCEEeCCCCcCCCCcCccccccccCccccccCcccCccCCCCCCCcccccceeeEeecCCchhhhhh
Q 048402          409 HGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEI  488 (677)
Q Consensus       409 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  488 (677)
                      ++ +|..+.  ++|++|++++|.+.+..|..+..+++                                           
T Consensus       185 ~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~-------------------------------------------  218 (332)
T 2ft3_A          185 TG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSK-------------------------------------------  218 (332)
T ss_dssp             SS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTT-------------------------------------------
T ss_pred             Cc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCC-------------------------------------------
Confidence            85 454443  68888888888887666665555444                                           


Q ss_pred             hccccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeecccccccCCCCcEEECCCCcccccCccccccC------C
Q 048402          489 LNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNL------M  562 (677)
Q Consensus       489 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l------~  562 (677)
                         |+.|++++|++++..+..+..+++|++|++++|+++ .+|..+..+++|+.|++++|++++..+..|...      +
T Consensus       219 ---L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~  294 (332)
T 2ft3_A          219 ---LYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRA  294 (332)
T ss_dssp             ---CSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSC
T ss_pred             ---CCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccc
Confidence               478888888888877778888888888888888888 778888888888888888888887766666543      5


Q ss_pred             CCCEEEcccCccc--ccCCCC-CCCCCcCcccccCC
Q 048402          563 SLNHLNLSNNKLT--GKIPSS-TQLQSFDASSFTGN  595 (677)
Q Consensus       563 ~L~~L~ls~N~l~--~~~p~~-~~~~~l~~~~~~~n  595 (677)
                      +|+.|++++|++.  +..|.. ..++.++..++.+|
T Consensus       295 ~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n  330 (332)
T 2ft3_A          295 YYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY  330 (332)
T ss_dssp             CBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred             cccceEeecCcccccccCcccccccchhhhhhcccc
Confidence            6888888888886  333321 33445555555443

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.96  E-value=4.6e-29  Score=256.64  Aligned_cols=278  Identities=19%  Similarity=0.201  Sum_probs=218.1

Q ss_pred             ccEEEcccCCCCCCCCCCCCCccEEEccCCcccccCChhHhhccCCCCCcCeEecCCCCCcccCCcccccCCCCceeccc
Q 048402          252 LLFLSVHSNNMSGPLPLISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELS  331 (677)
Q Consensus       252 L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~  331 (677)
                      ....+.+++.++..+....++|++|++++|.+++..+..    +..+++|++|++++|.+++..+..|.++++|++|+++
T Consensus        33 ~~~c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  108 (353)
T 2z80_A           33 NGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSD----LQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS  108 (353)
T ss_dssp             TSEEECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTT----TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CeEeeCCCCCcccccccccccCcEEECCCCcCcccCHHH----hccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECC
Confidence            334566666666555445668888888888887655543    3458899999999999988888889999999999999


Q ss_pred             CccccccCCcCcCCCCCccEEECcCCcccccCC-ccCcCCCCCCEEecCCCcccccCChhhhhccCCceEEEcCCCcccc
Q 048402          332 NNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIP-VSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHG  410 (677)
Q Consensus       332 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~  410 (677)
                      +|++++..+..|..+++|++|++++|++++..+ ..|..+++|++|++++|...+.++...+..+++|++|++++|.+++
T Consensus       109 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~  188 (353)
T 2z80_A          109 YNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS  188 (353)
T ss_dssp             SSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred             CCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCc
Confidence            999986555558889999999999999985544 4788899999999999853335544444478999999999999998


Q ss_pred             cCCccccCCCCCCEEeCCCCcCCCCcCccccccccCccccccCcccCccCCCCCCCcccccceeeEeecCCchhhhhhhc
Q 048402          411 PLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILN  490 (677)
Q Consensus       411 ~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  490 (677)
                      ..|..+..+++|++|++++|++. .+|.                                             .....++
T Consensus       189 ~~~~~l~~l~~L~~L~l~~n~l~-~~~~---------------------------------------------~~~~~~~  222 (353)
T 2z80_A          189 YEPKSLKSIQNVSHLILHMKQHI-LLLE---------------------------------------------IFVDVTS  222 (353)
T ss_dssp             ECTTTTTTCSEEEEEEEECSCST-THHH---------------------------------------------HHHHHTT
T ss_pred             cCHHHHhccccCCeecCCCCccc-cchh---------------------------------------------hhhhhcc
Confidence            88889999999999999999874 2222                                             1233466


Q ss_pred             cccEEEcccCcccccCCcccC---CCCCCcEEeccCCccee----ecccccccCCCCcEEECCCCcccccCccc-cccCC
Q 048402          491 LVKETDVSRNNLTKSIPLEMT---NLKATQSLNFSHNSFTG----RIPESIGAMRSLESIDFSVNQLSGEIPQS-MSNLM  562 (677)
Q Consensus       491 ~L~~L~Ls~n~l~~~~~~~l~---~l~~L~~L~Ls~n~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~  562 (677)
                      +|+.|++++|.+++..+..+.   ....++.++++++.+.+    .+|+.+.++++|++|++++|+++ .+|.. |..++
T Consensus       223 ~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~  301 (353)
T 2z80_A          223 SVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLT  301 (353)
T ss_dssp             TEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCT
T ss_pred             cccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCC
Confidence            779999999999876555443   45678888888888775    47888999999999999999999 55555 68999


Q ss_pred             CCCEEEcccCcccccCCC
Q 048402          563 SLNHLNLSNNKLTGKIPS  580 (677)
Q Consensus       563 ~L~~L~ls~N~l~~~~p~  580 (677)
                      +|++|++++|++.|.+|.
T Consensus       302 ~L~~L~L~~N~~~~~~~~  319 (353)
T 2z80_A          302 SLQKIWLHTNPWDCSCPR  319 (353)
T ss_dssp             TCCEEECCSSCBCCCHHH
T ss_pred             CCCEEEeeCCCccCcCCC
Confidence            999999999999998874

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.96  E-value=3.3e-28  Score=245.10  Aligned_cols=235  Identities=23%  Similarity=0.256  Sum_probs=172.5

Q ss_pred             CCcCeEecCCCCCcccCCcccccCCCCceecccCcccccc--CCcCcCCCCCccEEECcCCcccccCCccCcCCCCCCEE
Q 048402          299 KSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGK--LPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESL  376 (677)
Q Consensus       299 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L  376 (677)
                      +++++|++++|.++...+..|.++++|++|++++|.++..  .+..+..+++|++|++++|.++ .+|..+..+++|++|
T Consensus        28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L  106 (306)
T 2z66_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHL  106 (306)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEE
T ss_pred             CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEE
Confidence            4566666666666644444466677777777777766532  2445556677777777777776 345556777777777


Q ss_pred             ecCCCcccccCChhhhhccCCceEEEcCCCcccccCCccccCCCCCCEEeCCCCcCCC-CcCccccccccCccccccCcc
Q 048402          377 DVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFG-TIPKCINNITGMVAANSFTRS  455 (677)
Q Consensus       377 ~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~p~~~~~l~~l~~~~~~~~~  455 (677)
                      ++++|.+.+..+...+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+ ..|..+..+            
T Consensus       107 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l------------  174 (306)
T 2z66_A          107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL------------  174 (306)
T ss_dssp             ECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTC------------
T ss_pred             ECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhC------------
Confidence            7777777633332333467778888888887777777777888888888888887765 345544443            


Q ss_pred             cCccCCCCCCCcccccceeeEeecCCchhhhhhhccccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeecccccc
Q 048402          456 SQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIG  535 (677)
Q Consensus       456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~  535 (677)
                                                        ++|++|++++|++++..|..+..+++|++|++++|++++..+..+.
T Consensus       175 ----------------------------------~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  220 (306)
T 2z66_A          175 ----------------------------------RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYK  220 (306)
T ss_dssp             ----------------------------------TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGT
T ss_pred             ----------------------------------cCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhcc
Confidence                                              3448888888888887788888899999999999999877777888


Q ss_pred             cCCCCcEEECCCCcccccCccccccCC-CCCEEEcccCcccccCCC
Q 048402          536 AMRSLESIDFSVNQLSGEIPQSMSNLM-SLNHLNLSNNKLTGKIPS  580 (677)
Q Consensus       536 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~ls~N~l~~~~p~  580 (677)
                      .+++|+.|++++|++++..|..+..++ +|++|++++|++.|.++.
T Consensus       221 ~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~  266 (306)
T 2z66_A          221 CLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH  266 (306)
T ss_dssp             TCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGG
T ss_pred             CcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccCh
Confidence            899999999999999988888888884 899999999999887653

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.96  E-value=1.3e-27  Score=254.45  Aligned_cols=233  Identities=21%  Similarity=0.192  Sum_probs=182.3

Q ss_pred             CCcCeEecCCCCCcccCCcccccCCCCceecccCccccccCCcCcCCCCCccEEECcCCcccccCCccCcCCCCCCEEec
Q 048402          299 KSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDV  378 (677)
Q Consensus       299 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l  378 (677)
                      ++++.|++++|.+++..+..|.++++|++|++++|.+++..+..|.++++|+.|++++|++++..+..|..+++|++|++
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  154 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL  154 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred             CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence            56677777777777666777777777777777777777766677777777777777777777666666777777777777


Q ss_pred             CCCcccccCChhhhhccCCceEEEcCCC-cccccCCccccCCCCCCEEeCCCCcCCCCcCccccccccCccccccCcccC
Q 048402          379 GENEFVGNIPTWTGERFSRMVVLILRSN-NFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQ  457 (677)
Q Consensus       379 ~~n~l~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~  457 (677)
                      ++|++. .++...+..+++|+.|++++| .+....+..|..+++|++|++++|++++. |. +.                
T Consensus       155 ~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~~-~~----------------  215 (452)
T 3zyi_A          155 RNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-PN-LT----------------  215 (452)
T ss_dssp             CSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-CC-CT----------------
T ss_pred             CCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-cc-cc----------------
Confidence            777776 555555556777778888774 34433444677888888888888887632 31 22                


Q ss_pred             ccCCCCCCCcccccceeeEeecCCchhhhhhhccccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeecccccccC
Q 048402          458 QYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAM  537 (677)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l  537 (677)
                                                    .+++|+.|++++|.+++..|..|.++++|+.|++++|++++..|..|.++
T Consensus       216 ------------------------------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  265 (452)
T 3zyi_A          216 ------------------------------PLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGL  265 (452)
T ss_dssp             ------------------------------TCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred             ------------------------------ccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCC
Confidence                                          24556899999999998889999999999999999999998889999999


Q ss_pred             CCCcEEECCCCcccccCccccccCCCCCEEEcccCcccccCCC
Q 048402          538 RSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLSNNKLTGKIPS  580 (677)
Q Consensus       538 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~  580 (677)
                      ++|+.|+|++|++++..++.|..+++|+.|++++|++.|.+..
T Consensus       266 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~  308 (452)
T 3zyi_A          266 ASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDI  308 (452)
T ss_dssp             TTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTT
T ss_pred             CCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCCc
Confidence            9999999999999987778889999999999999999887753

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.96  E-value=1.6e-27  Score=252.61  Aligned_cols=233  Identities=23%  Similarity=0.215  Sum_probs=175.6

Q ss_pred             CCcCeEecCCCCCcccCCcccccCCCCceecccCccccccCCcCcCCCCCccEEECcCCcccccCCccCcCCCCCCEEec
Q 048402          299 KSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDV  378 (677)
Q Consensus       299 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l  378 (677)
                      ++++.|++++|.+.+..+..|.++++|++|+|++|.+++..+..|.++++|++|++++|++++..+..|..+++|++|++
T Consensus        64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  143 (440)
T 3zyj_A           64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL  143 (440)
T ss_dssp             TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred             CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence            45666666666666666666667777777777777776666666777777777777777776555556777777777777


Q ss_pred             CCCcccccCChhhhhccCCceEEEcCCCc-ccccCCccccCCCCCCEEeCCCCcCCCCcCccccccccCccccccCcccC
Q 048402          379 GENEFVGNIPTWTGERFSRMVVLILRSNN-FHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQ  457 (677)
Q Consensus       379 ~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~  457 (677)
                      ++|.+. .++...+..+++|++|++++|+ +....+..|.++++|++|++++|+++ .+|. +.                
T Consensus       144 ~~N~i~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~-~~----------------  204 (440)
T 3zyj_A          144 RNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN-LT----------------  204 (440)
T ss_dssp             CSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCCC-CT----------------
T ss_pred             CCCccc-ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-cccc-cC----------------
Confidence            777766 4444444467777777777643 33333446777888888888888776 2331 22                


Q ss_pred             ccCCCCCCCcccccceeeEeecCCchhhhhhhccccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeecccccccC
Q 048402          458 QYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAM  537 (677)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l  537 (677)
                                                    .+++|+.|++++|++++..|..|.++++|++|++++|++++..+..|.++
T Consensus       205 ------------------------------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  254 (440)
T 3zyj_A          205 ------------------------------PLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNL  254 (440)
T ss_dssp             ------------------------------TCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTC
T ss_pred             ------------------------------CCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCC
Confidence                                          24556899999999998889999999999999999999998889999999


Q ss_pred             CCCcEEECCCCcccccCccccccCCCCCEEEcccCcccccCCC
Q 048402          538 RSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLSNNKLTGKIPS  580 (677)
Q Consensus       538 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~  580 (677)
                      ++|+.|+|++|++++..++.|..+++|+.|++++|++.|.+..
T Consensus       255 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l  297 (440)
T 3zyj_A          255 QSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDI  297 (440)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSSTT
T ss_pred             CCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCCc
Confidence            9999999999999988888889999999999999999987753

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=4e-28  Score=244.46  Aligned_cols=275  Identities=19%  Similarity=0.217  Sum_probs=204.2

Q ss_pred             EEEcccCCCCCCCCCCCCCccEEEccCCcccccCChhHhhccCCCCCcCeEecCCCCCccc--CCcccccCCCCceeccc
Q 048402          254 FLSVHSNNMSGPLPLISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGE--IPDCWMSYQNLEILELS  331 (677)
Q Consensus       254 ~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~L~  331 (677)
                      .++.+++.++.......+++++|++++|.++...+..    +..+++|++|++++|.++..  .+..+..+++|++|+++
T Consensus        11 ~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls   86 (306)
T 2z66_A           11 EIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGV----FDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS   86 (306)
T ss_dssp             EEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTT----TTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred             EEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhH----hhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence            4555555555444444567777777777776443332    33477888888888887632  25666778888888888


Q ss_pred             CccccccCCcCcCCCCCccEEECcCCcccccCC-ccCcCCCCCCEEecCCCcccccCChhhhhccCCceEEEcCCCcccc
Q 048402          332 NNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIP-VSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHG  410 (677)
Q Consensus       332 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~  410 (677)
                      +|.+. .+|..+..+++|++|++++|++++..+ ..+..+++|++|++++|.+.+..+..+. .+++|++|++++|.+.+
T Consensus        87 ~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~  164 (306)
T 2z66_A           87 FNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN-GLSSLEVLKMAGNSFQE  164 (306)
T ss_dssp             SCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTT-TCTTCCEEECTTCEEGG
T ss_pred             CCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcc-cCcCCCEEECCCCcccc
Confidence            88887 456667788888888888888876554 5678888888888888888755555443 67888888888888876


Q ss_pred             -cCCccccCCCCCCEEeCCCCcCCCCcCccccccccCccccccCcccCccCCCCCCCcccccceeeEeecCCchhhhhhh
Q 048402          411 -PLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEIL  489 (677)
Q Consensus       411 -~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  489 (677)
                       ..|..+..+++|++|++++|++.+..|..+..+++                                            
T Consensus       165 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~--------------------------------------------  200 (306)
T 2z66_A          165 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS--------------------------------------------  200 (306)
T ss_dssp             GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTT--------------------------------------------
T ss_pred             ccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCC--------------------------------------------
Confidence             57788888899999999999887666665555444                                            


Q ss_pred             ccccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeecccccccCC-CCcEEECCCCcccccCc--cccccCCCCCE
Q 048402          490 NLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMR-SLESIDFSVNQLSGEIP--QSMSNLMSLNH  566 (677)
Q Consensus       490 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~-~L~~L~Ls~N~l~~~~p--~~l~~l~~L~~  566 (677)
                        |++|++++|++++..+..+..+++|++|++++|++++..|..+..++ +|++|++++|.+++..+  .....+...+.
T Consensus       201 --L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~  278 (306)
T 2z66_A          201 --LQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQ  278 (306)
T ss_dssp             --CCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGG
T ss_pred             --CCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhh
Confidence              48899999999887777889999999999999999988888898884 99999999999985422  11222344455


Q ss_pred             EEcccCcccccCCC
Q 048402          567 LNLSNNKLTGKIPS  580 (677)
Q Consensus       567 L~ls~N~l~~~~p~  580 (677)
                      +.+..+.+.|..|.
T Consensus       279 ~~~~~~~~~C~~p~  292 (306)
T 2z66_A          279 LLVEVERMECATPS  292 (306)
T ss_dssp             GBSCGGGCBEEESG
T ss_pred             hhccccccccCCch
Confidence            66677888887776

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.95  E-value=1e-27  Score=242.97  Aligned_cols=227  Identities=17%  Similarity=0.264  Sum_probs=192.7

Q ss_pred             CCCcCeEecCCCCCcccCCcccccCCCCceecccCccccccCCcCcCCCCCccEEECcCCcccccCCccCcCCCCCCEEe
Q 048402          298 PKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLD  377 (677)
Q Consensus       298 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~  377 (677)
                      .+.++.|++++|.+. .+|..+..+++|++|++++|.++ .+|..+..+++|++|++++|+++ .+|..+..+++|++|+
T Consensus        80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~  156 (328)
T 4fcg_A           80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS  156 (328)
T ss_dssp             STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred             ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence            467888888888887 66777778888888888888888 77888888888888888888888 6677888888888888


Q ss_pred             cCCCcccccCChhhh--------hccCCceEEEcCCCcccccCCccccCCCCCCEEeCCCCcCCCCcCccccccccCccc
Q 048402          378 VGENEFVGNIPTWTG--------ERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAA  449 (677)
Q Consensus       378 l~~n~l~~~~~~~~~--------~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~  449 (677)
                      +++|.+.+.+|..+.        ..+++|++|++++|.++ .+|..+..+++|++|++++|++.+ +|..+..+      
T Consensus       157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l------  228 (328)
T 4fcg_A          157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHL------  228 (328)
T ss_dssp             EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGC------
T ss_pred             CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccC------
Confidence            888877778887653        24889999999999988 778888999999999999998874 55445444      


Q ss_pred             cccCcccCccCCCCCCCcccccceeeEeecCCchhhhhhhccccEEEcccCcccccCCcccCCCCCCcEEeccCCcceee
Q 048402          450 NSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGR  529 (677)
Q Consensus       450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~  529 (677)
                                                              ++|++|++++|++.+.+|..++++++|++|++++|++.+.
T Consensus       229 ----------------------------------------~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~  268 (328)
T 4fcg_A          229 ----------------------------------------PKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLT  268 (328)
T ss_dssp             ----------------------------------------TTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCB
T ss_pred             ----------------------------------------CCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhh
Confidence                                                    4458999999999999999999999999999999999989


Q ss_pred             cccccccCCCCcEEECCCCcccccCccccccCCCCCEEEcccCccc
Q 048402          530 IPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLSNNKLT  575 (677)
Q Consensus       530 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~  575 (677)
                      +|..+.++++|++|++++|++.+.+|+.+.++++|+.+++..|.+.
T Consensus       269 ~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          269 LPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA  314 (328)
T ss_dssp             CCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred             cchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence            9999999999999999999999999999999999999999877654

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.95  E-value=8.9e-28  Score=239.20  Aligned_cols=229  Identities=19%  Similarity=0.192  Sum_probs=144.5

Q ss_pred             eEecCCCCCcccCCcccccCCCCceecccCccccccCCcCcCCCCCccEEECcCCcccccCCccCcCCCCCCEEecCCCc
Q 048402          303 GLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENE  382 (677)
Q Consensus       303 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~  382 (677)
                      .++.+++.++ .+|..+  .++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|.++++|++|++++|.
T Consensus        15 ~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~   91 (285)
T 1ozn_A           15 TTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA   91 (285)
T ss_dssp             EEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred             EEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence            4444444444 233221  2455556666665555555555556666666666666655555556666666666666665


Q ss_pred             -ccccCChhhhhccCCceEEEcCCCcccccCCccccCCCCCCEEeCCCCcCCCCcCccccccccCccccccCcccCccCC
Q 048402          383 -FVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLP  461 (677)
Q Consensus       383 -l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~  461 (677)
                       +. .++...+..+++|++|++++|.+++..+..+..+++|++|++++|++.+..+..+..++                 
T Consensus        92 ~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-----------------  153 (285)
T 1ozn_A           92 QLR-SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLG-----------------  153 (285)
T ss_dssp             TCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-----------------
T ss_pred             Ccc-ccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCC-----------------
Confidence             43 33222223556666666666666655566666667777777777766544443333333                 


Q ss_pred             CCCCCcccccceeeEeecCCchhhhhhhccccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeecccccccCCCCc
Q 048402          462 LPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLE  541 (677)
Q Consensus       462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  541 (677)
                                                   +|++|++++|++++..+..+..+++|++|++++|++++..|..|.++++|+
T Consensus       154 -----------------------------~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  204 (285)
T 1ozn_A          154 -----------------------------NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLM  204 (285)
T ss_dssp             -----------------------------TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred             -----------------------------CccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCccccc
Confidence                                         346777777777766666677788888888888888877777788888888


Q ss_pred             EEECCCCcccccCccccccCCCCCEEEcccCcccccCCCC
Q 048402          542 SIDFSVNQLSGEIPQSMSNLMSLNHLNLSNNKLTGKIPSS  581 (677)
Q Consensus       542 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~  581 (677)
                      .|++++|.+++..++.+..+++|++|++++|++.|.++..
T Consensus       205 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~  244 (285)
T 1ozn_A          205 TLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR  244 (285)
T ss_dssp             EEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH
T ss_pred             EeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH
Confidence            8888888888666666777888888888888887766543

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.95  E-value=1.5e-29  Score=279.96  Aligned_cols=374  Identities=17%  Similarity=0.103  Sum_probs=185.6

Q ss_pred             CCCCCCEEEccCCcCCcccchhhhhc-cccCcCCccEEEcccCc-Ccc-ccccccCCCCCCCEEECcCCccccC----CC
Q 048402           50 SLCNLKSINLRGVHLSQEISEILNIF-SGCVSIELESLDLRSSS-ISG-HLTDQLGQFKNLDNLDLANNSIVGP----IP  122 (677)
Q Consensus        50 ~l~~L~~L~l~~n~l~~~~~~~~~~l-~~~~~~~L~~L~L~~n~-l~~-~~~~~~~~l~~L~~L~L~~n~l~~~----~~  122 (677)
                      .+++|++|++++|.+++..+..+... +.    +|++|++++|. ++. .++....++++|++|++++|.+++.    ++
T Consensus       110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~----~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~  185 (592)
T 3ogk_B          110 NLRQLKSVHFRRMIVSDLDLDRLAKARAD----DLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLH  185 (592)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHHGG----GCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHH
T ss_pred             hCCCCCeEEeeccEecHHHHHHHHHhccc----cCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHH
Confidence            45666666666665555444444432 20    36666666554 111 1122223556666666666655433    11


Q ss_pred             cCCCCCCCCCEEEccccccc----cccChhhhhCCCCCCEEEeeccccceecCCCCCCCcCccEEEeecccCC---CCCC
Q 048402          123 QSLGHLSNLRVLQIYNNKLN----GTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQLVALGFHNCYVG---SRFP  195 (677)
Q Consensus       123 ~~~~~l~~L~~L~L~~n~i~----~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~---~~~~  195 (677)
                      ..+..+++|++|++++|.++    +.++. .+.++++|+.|++++|.+.+. +..+..+++|++|+++.+...   ...+
T Consensus       186 ~~~~~~~~L~~L~L~~n~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~~~~~~~~  263 (592)
T 3ogk_B          186 ELAQHNTSLEVLNFYMTEFAKISPKDLET-IARNCRSLVSVKVGDFEILEL-VGFFKAAANLEEFCGGSLNEDIGMPEKY  263 (592)
T ss_dssp             HHHHHCCCCCEEECTTCCCSSCCHHHHHH-HHHHCTTCCEEECSSCBGGGG-HHHHHHCTTCCEEEECBCCCCTTCTTSS
T ss_pred             HHHhcCCCccEEEeeccCCCccCHHHHHH-HHhhCCCCcEEeccCccHHHH-HHHHhhhhHHHhhcccccccccchHHHH
Confidence            22334556666666666554    12222 344556666666666555442 233445555666665542221   1223


Q ss_pred             hhccCCCCCCEEEccCCCCCCccchHHHhccCCccEEECCCccCccccC--CccccccccEEEcccCCCCC-CCC---CC
Q 048402          196 QWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQIT--DLTKVTQLLFLSVHSNNMSG-PLP---LI  269 (677)
Q Consensus       196 ~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~--~~~~~~~L~~L~l~~n~~~~-~~~---~~  269 (677)
                      ..+..+++|+.|+++++..... + .++..+++|++|++++|.+++...  .+..+++|+.|+++ +.+.. .++   ..
T Consensus       264 ~~l~~~~~L~~L~l~~~~~~~l-~-~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~  340 (592)
T 3ogk_B          264 MNLVFPRKLCRLGLSYMGPNEM-P-ILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQY  340 (592)
T ss_dssp             SCCCCCTTCCEEEETTCCTTTG-G-GGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHH
T ss_pred             HHhhccccccccCccccchhHH-H-HHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHh
Confidence            3445555666666655422221 2 222345566666666655433211  12334566666665 22221 111   11


Q ss_pred             CCCccEEEccC-----------CcccccCChhHhhccCCCCCcCeEecCCCCCcccCCccccc-CCCCceeccc----Cc
Q 048402          270 SSNLVYLDLSN-----------NSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMS-YQNLEILELS----NN  333 (677)
Q Consensus       270 ~~~L~~L~l~~-----------n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~L~----~n  333 (677)
                      +++|++|++++           +.+++.....+   ...+++|++|++..+.+++..+..+.. +++|+.|+++    .|
T Consensus       341 ~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l---~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n  417 (592)
T 3ogk_B          341 CKQLKRLRIERGADEQGMEDEEGLVSQRGLIAL---AQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREE  417 (592)
T ss_dssp             CTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHH---HHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCS
T ss_pred             CCCCCEEEeecCccccccccccCccCHHHHHHH---HhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCc
Confidence            45666666662           33332211111   122566777777666666554444443 6667777775    44


Q ss_pred             ccccc-----CCcCcCCCCCccEEECcCCc--ccccCCccCc-CCCCCCEEecCCCcccccCChhhhhccCCceEEEcCC
Q 048402          334 KFTGK-----LPNSLGSLTSLIWLLLGKNR--LSGTIPVSLK-NCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRS  405 (677)
Q Consensus       334 ~l~~~-----~~~~~~~l~~L~~L~l~~n~--~~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~  405 (677)
                      .+++.     ++..+.++++|+.|+++.|.  +++.....+. .+++|++|++++|++++.....+...+++|++|++++
T Consensus       418 ~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~  497 (592)
T 3ogk_B          418 RITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRG  497 (592)
T ss_dssp             CCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEES
T ss_pred             cccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccC
Confidence            55532     22224456677777775433  4433322232 3666777777777665432222333567777777777


Q ss_pred             Cccccc-CCccccCCCCCCEEeCCCCcCCCC
Q 048402          406 NNFHGP-LPTRLCDLAFLQILDLADNNLFGT  435 (677)
Q Consensus       406 n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~  435 (677)
                      |.+++. ++.....+++|++|++++|++++.
T Consensus       498 n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~  528 (592)
T 3ogk_B          498 CCFSERAIAAAVTKLPSLRYLWVQGYRASMT  528 (592)
T ss_dssp             CCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred             CCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence            776532 233344566777777777776543

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.95  E-value=1.5e-29  Score=279.98  Aligned_cols=314  Identities=11%  Similarity=0.026  Sum_probs=148.0

Q ss_pred             ccCCCCCCEEEccCCCCCCccch---HHHhccCCccEEECCCccCccccCCccccccccEEEcccCCCCCCCCCCCCCcc
Q 048402          198 LHSQKHLQYLNLLNSGMSDLFPI---RFLKSAFQLKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNNMSGPLPLISSNLV  274 (677)
Q Consensus       198 ~~~l~~L~~L~l~~n~i~~~~~~---~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~  274 (677)
                      +..+++|++|++++|.+++....   .+...+++|++|++++|.+.+....+...++|+.|+++........        
T Consensus       188 ~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~--------  259 (592)
T 3ogk_B          188 AQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGM--------  259 (592)
T ss_dssp             HHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTC--------
T ss_pred             HhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccch--------
Confidence            34566677777777766533222   2234566777777777766654444444466666666542111000        


Q ss_pred             EEEccCCcccccCChhHhhccCCCCCcCeEecCCCCCcccCCcccccCCCCceecccCccccccCC-cCcCCCCCccEEE
Q 048402          275 YLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLP-NSLGSLTSLIWLL  353 (677)
Q Consensus       275 ~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~  353 (677)
                                    ......+..+++|+.++++++.. +.+|..+..+++|++|++++|.+++... ..+..+++|+.|+
T Consensus       260 --------------~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~  324 (592)
T 3ogk_B          260 --------------PEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLE  324 (592)
T ss_dssp             --------------TTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEE
T ss_pred             --------------HHHHHHhhccccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEe
Confidence                          00011222344555555554322 2344445555566666666555443222 2234555666666


Q ss_pred             CcCCcccccCCccCcCCCCCCEEecCC-----------CcccccCChhhhhccCCceEEEcCCCcccccCCccccC-CCC
Q 048402          354 LGKNRLSGTIPVSLKNCTALESLDVGE-----------NEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCD-LAF  421 (677)
Q Consensus       354 l~~n~~~~~~~~~~~~l~~L~~L~l~~-----------n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~  421 (677)
                      ++++-..+..+..+..+++|++|++++           +.+++.....+...+++|++|+++.|.+++..+..+.. +++
T Consensus       325 L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~  404 (592)
T 3ogk_B          325 TRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKN  404 (592)
T ss_dssp             EEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCS
T ss_pred             ccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCC
Confidence            652222222222234455666666662           33332222222234566666666555555443333333 556


Q ss_pred             CCEEeCC----CCcCCCCcCccccccccCccccccCcccCccCCCCCCCcccccceeeEeecCCchhhhhhhccccEEEc
Q 048402          422 LQILDLA----DNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDV  497 (677)
Q Consensus       422 L~~L~Ls----~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L  497 (677)
                      |+.|+++    .|.+++...+.                                         ........+++|+.|++
T Consensus       405 L~~L~l~~~~~~n~l~~~p~~~-----------------------------------------~~~~~~~~~~~L~~L~L  443 (592)
T 3ogk_B          405 LCDFRLVLLDREERITDLPLDN-----------------------------------------GVRSLLIGCKKLRRFAF  443 (592)
T ss_dssp             CCEEEEEECSCCSCCSSCCCHH-----------------------------------------HHHHHHHHCTTCCEEEE
T ss_pred             CcEEEEeecCCCccccCchHHH-----------------------------------------HHHHHHHhCCCCCEEEE
Confidence            6666664    33333210000                                         00111223444556666


Q ss_pred             ccCc--ccccCCcccC-CCCCCcEEeccCCcceee-cccccccCCCCcEEECCCCccccc-CccccccCCCCCEEEcccC
Q 048402          498 SRNN--LTKSIPLEMT-NLKATQSLNFSHNSFTGR-IPESIGAMRSLESIDFSVNQLSGE-IPQSMSNLMSLNHLNLSNN  572 (677)
Q Consensus       498 s~n~--l~~~~~~~l~-~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~ls~N  572 (677)
                      ++|.  +++..+..+. .+++|++|++++|++++. ++..+.++++|++|++++|.+++. ++..+..+++|++|++++|
T Consensus       444 ~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n  523 (592)
T 3ogk_B          444 YLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGY  523 (592)
T ss_dssp             ECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESC
T ss_pred             ecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCC
Confidence            5322  3333222222 255566666666665542 233445566666666666665433 2233345566666666666


Q ss_pred             ccc
Q 048402          573 KLT  575 (677)
Q Consensus       573 ~l~  575 (677)
                      +++
T Consensus       524 ~it  526 (592)
T 3ogk_B          524 RAS  526 (592)
T ss_dssp             BCC
T ss_pred             cCC
Confidence            654

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.95  E-value=1.6e-26  Score=245.86  Aligned_cols=248  Identities=21%  Similarity=0.205  Sum_probs=215.7

Q ss_pred             ccEEEcccCCCCCCCCCCCCCccEEEccCCcccccCChhHhhccCCCCCcCeEecCCCCCcccCCcccccCCCCceeccc
Q 048402          252 LLFLSVHSNNMSGPLPLISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELS  331 (677)
Q Consensus       252 L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~  331 (677)
                      ...++.++..++.......+++++|++++|.+++..+..+    ..+++|++|++++|.+.+..+..|.++++|++|+|+
T Consensus        56 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~----~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~  131 (452)
T 3zyi_A           56 FSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTF----RHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF  131 (452)
T ss_dssp             SCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTT----TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHc----CCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence            4456666666665544456789999999999987766644    458999999999999998888999999999999999


Q ss_pred             CccccccCCcCcCCCCCccEEECcCCcccccCCccCcCCCCCCEEecCCCcccccCChhhhhccCCceEEEcCCCccccc
Q 048402          332 NNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGP  411 (677)
Q Consensus       332 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~  411 (677)
                      +|++++..+..|..+++|++|++++|+++...+..|..+++|++|++++|...+.++...+..+++|++|++++|++++.
T Consensus       132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~  211 (452)
T 3zyi_A          132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM  211 (452)
T ss_dssp             SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC
T ss_pred             CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc
Confidence            99999877788999999999999999999888889999999999999997655678877677899999999999999854


Q ss_pred             CCccccCCCCCCEEeCCCCcCCCCcCccccccccCccccccCcccCccCCCCCCCcccccceeeEeecCCchhhhhhhcc
Q 048402          412 LPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNL  491 (677)
Q Consensus       412 ~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  491 (677)
                       | .+..+++|+.|++++|++.+..|..+.++++                                              
T Consensus       212 -~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~----------------------------------------------  243 (452)
T 3zyi_A          212 -P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSS----------------------------------------------  243 (452)
T ss_dssp             -C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTT----------------------------------------------
T ss_pred             -c-cccccccccEEECcCCcCcccCcccccCccC----------------------------------------------
Confidence             4 5788999999999999998777776666554                                              


Q ss_pred             ccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeecccccccCCCCcEEECCCCccc
Q 048402          492 VKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLS  551 (677)
Q Consensus       492 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~  551 (677)
                      |+.|++++|++++..+..|.++++|+.|+|++|++++..++.|..+++|+.|++++|.+.
T Consensus       244 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  303 (452)
T 3zyi_A          244 LKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN  303 (452)
T ss_dssp             CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred             CCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence            499999999999999999999999999999999999777788999999999999999986

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=4e-27  Score=242.18  Aligned_cols=286  Identities=22%  Similarity=0.188  Sum_probs=186.3

Q ss_pred             CCCCCCEEecCCCCCCCccCchhhcCCCCCCEEEccCCcCCcccchhhhhccccCcCCccEEEcccCcCccccccccCCC
Q 048402           25 NLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQF  104 (677)
Q Consensus        25 ~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l  104 (677)
                      .|+...+.+++ ++.++ .+|..+.  ++|++|++++|.+++..+..+..++     +|++|++++|.+++..+..|.++
T Consensus        29 ~C~~~~~c~~~-~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~-----~L~~L~L~~n~l~~~~~~~~~~l   99 (353)
T 2z80_A           29 SCDRNGICKGS-SGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCV-----NLQALVLTSNGINTIEEDSFSSL   99 (353)
T ss_dssp             EECTTSEEECC-STTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCT-----TCCEEECTTSCCCEECTTTTTTC
T ss_pred             CCCCCeEeeCC-CCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCC-----CCCEEECCCCccCccCHhhcCCC
Confidence            45556667777 55544 4455443  4788888888887776666777777     78888888888777667777788


Q ss_pred             CCCCEEECcCCccccCCCcCCCCCCCCCEEEccccccccccCh-hhhhCCCCCCEEEeecc-ccceecCCCCCCCcCccE
Q 048402          105 KNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSE-IHFSNLTKLSWFRVGGN-KLTLEVRHDWIPPFQLVA  182 (677)
Q Consensus       105 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~l~~-~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~L~~  182 (677)
                      ++|++|++++|.+++..+..+.++++|++|++++|.++ .++. ..+.++++|+.|++++| .+....+..+..+++|++
T Consensus       100 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~  178 (353)
T 2z80_A          100 GSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEE  178 (353)
T ss_dssp             TTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEE
T ss_pred             CCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCE
Confidence            88888888888877554445777788888888888776 5554 46777788888888877 466666667777778888


Q ss_pred             EEeecccCCCCCChhccCCCCCCEEEccCCCCCCccchHHHhccCCccEEECCCccCccccCCccccccccEEEcccCCC
Q 048402          183 LGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNNM  262 (677)
Q Consensus       183 L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~l~~n~~  262 (677)
                      |++++|.+.+..|..+..+++|++|++++|.++.. +..+...+++|+.|++++|.+++........             
T Consensus       179 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~-------------  244 (353)
T 2z80_A          179 LEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILL-LEIFVDVTSSVECLELRDTDLDTFHFSELST-------------  244 (353)
T ss_dssp             EEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTH-HHHHHHHTTTEEEEEEESCBCTTCCCC-----------------
T ss_pred             EECCCCCcCccCHHHHhccccCCeecCCCCccccc-hhhhhhhcccccEEECCCCcccccccccccc-------------
Confidence            88888877777777888888888888888887554 4444455677777777777766432211000             


Q ss_pred             CCCCCCCCCCccEEEccCCcccccCChhHhhccCCCCCcCeEecCCCCCcccCCcccccCCCCceecccCccccccCCcC
Q 048402          263 SGPLPLISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNS  342 (677)
Q Consensus       263 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  342 (677)
                          ....+.++.++++++.+.+..-.                        .+|..+..+++|++|++++|+++...+..
T Consensus       245 ----~~~~~~l~~l~L~~~~l~~~~l~------------------------~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~  296 (353)
T 2z80_A          245 ----GETNSLIKKFTFRNVKITDESLF------------------------QVMKLLNQISGLLELEFSRNQLKSVPDGI  296 (353)
T ss_dssp             ------CCCCCCEEEEESCBCCHHHHH------------------------HHHHHHHTCTTCCEEECCSSCCCCCCTTT
T ss_pred             ----ccccchhhccccccccccCcchh------------------------hhHHHHhcccCCCEEECCCCCCCccCHHH
Confidence                00022334444444433321111                        24455666677777777777776333333


Q ss_pred             cCCCCCccEEECcCCccccc
Q 048402          343 LGSLTSLIWLLLGKNRLSGT  362 (677)
Q Consensus       343 ~~~l~~L~~L~l~~n~~~~~  362 (677)
                      |..+++|++|++++|++.+.
T Consensus       297 ~~~l~~L~~L~L~~N~~~~~  316 (353)
T 2z80_A          297 FDRLTSLQKIWLHTNPWDCS  316 (353)
T ss_dssp             TTTCTTCCEEECCSSCBCCC
T ss_pred             HhcCCCCCEEEeeCCCccCc
Confidence            46677777777777776643

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.95  E-value=3.9e-27  Score=234.52  Aligned_cols=236  Identities=17%  Similarity=0.197  Sum_probs=179.6

Q ss_pred             CCCcCeEecCCCCCcccCCcccccCCCCceecccCccccccCCcCcCCCCCccEEECcCCc-ccccCCccCcCCCCCCEE
Q 048402          298 PKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNR-LSGTIPVSLKNCTALESL  376 (677)
Q Consensus       298 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L  376 (677)
                      .+++++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|+ +....+..|..+++|++|
T Consensus        31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L  110 (285)
T 1ozn_A           31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL  110 (285)
T ss_dssp             CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred             CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence            4567777777777776666677778888888888888877777778888888888888886 666667777888888888


Q ss_pred             ecCCCcccccCChhhhhccCCceEEEcCCCcccccCCccccCCCCCCEEeCCCCcCCCCcCccccccccCccccccCccc
Q 048402          377 DVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSS  456 (677)
Q Consensus       377 ~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~  456 (677)
                      ++++|.+.+..|..+ ..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+             
T Consensus       111 ~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-------------  176 (285)
T 1ozn_A          111 HLDRCGLQELGPGLF-RGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGL-------------  176 (285)
T ss_dssp             ECTTSCCCCCCTTTT-TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTC-------------
T ss_pred             ECCCCcCCEECHhHh-hCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCc-------------
Confidence            888888774444433 367888888888888886666678888888888888888874444444443             


Q ss_pred             CccCCCCCCCcccccceeeEeecCCchhhhhhhccccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeeccccccc
Q 048402          457 QQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGA  536 (677)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~  536 (677)
                                                       ++|+.|++++|.+++..|..+.++++|++|++++|++++..++.+..
T Consensus       177 ---------------------------------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  223 (285)
T 1ozn_A          177 ---------------------------------HSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAP  223 (285)
T ss_dssp             ---------------------------------TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTT
T ss_pred             ---------------------------------cccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHccc
Confidence                                             44588899999998888889999999999999999999777778999


Q ss_pred             CCCCcEEECCCCcccccCccccccCCCCCEEEcccCcccccCCCC
Q 048402          537 MRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLSNNKLTGKIPSS  581 (677)
Q Consensus       537 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~  581 (677)
                      +++|++|++++|.+....+. ..-...++.+..+.+.+.|..|..
T Consensus       224 l~~L~~L~l~~N~~~c~~~~-~~~~~~l~~~~~~~~~~~c~~p~~  267 (285)
T 1ozn_A          224 LRALQYLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLPQR  267 (285)
T ss_dssp             CTTCCEEECCSSCEECSGGG-HHHHHHHHHCCSEECCCBEEESGG
T ss_pred             CcccCEEeccCCCccCCCCc-HHHHHHHHhcccccCccccCCchH
Confidence            99999999999999854332 111233455567888888888863

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.95  E-value=1.9e-26  Score=244.49  Aligned_cols=248  Identities=22%  Similarity=0.223  Sum_probs=214.9

Q ss_pred             ccEEEcccCCCCCCCCCCCCCccEEEccCCcccccCChhHhhccCCCCCcCeEecCCCCCcccCCcccccCCCCceeccc
Q 048402          252 LLFLSVHSNNMSGPLPLISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELS  331 (677)
Q Consensus       252 L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~  331 (677)
                      ...++.++..++..+....++++.|++++|.+++..+..    +..+++|++|++++|.+.+..+..|.++++|++|+|+
T Consensus        45 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~----~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~  120 (440)
T 3zyj_A           45 FSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNS----FKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF  120 (440)
T ss_dssp             SCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTT----TSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred             CCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHH----hhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence            455666666666555555678999999999988776654    4458999999999999998888899999999999999


Q ss_pred             CccccccCCcCcCCCCCccEEECcCCcccccCCccCcCCCCCCEEecCCCcccccCChhhhhccCCceEEEcCCCccccc
Q 048402          332 NNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGP  411 (677)
Q Consensus       332 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~  411 (677)
                      +|++++..+..|..+++|+.|++++|+++...+..|..+++|++|++++|...+.++...+..+++|++|++++|.++ .
T Consensus       121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~  199 (440)
T 3zyj_A          121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-E  199 (440)
T ss_dssp             SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-S
T ss_pred             CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-c
Confidence            999997777789999999999999999998888899999999999999976656788776778999999999999998 4


Q ss_pred             CCccccCCCCCCEEeCCCCcCCCCcCccccccccCccccccCcccCccCCCCCCCcccccceeeEeecCCchhhhhhhcc
Q 048402          412 LPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNL  491 (677)
Q Consensus       412 ~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  491 (677)
                      +| .+..+++|+.|++++|++++..|..|.++++                                              
T Consensus       200 ~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~----------------------------------------------  232 (440)
T 3zyj_A          200 IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMH----------------------------------------------  232 (440)
T ss_dssp             CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTT----------------------------------------------
T ss_pred             cc-ccCCCcccCEEECCCCccCccChhhhccCcc----------------------------------------------
Confidence            45 4788999999999999998777776666554                                              


Q ss_pred             ccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeecccccccCCCCcEEECCCCccc
Q 048402          492 VKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLS  551 (677)
Q Consensus       492 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~  551 (677)
                      |+.|++++|++++..+..|.++++|++|+|++|++++..++.|..+++|+.|+|++|.+.
T Consensus       233 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          233 LQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN  292 (440)
T ss_dssp             CCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred             CCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence            499999999999999999999999999999999999777788999999999999999986

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.94  E-value=8.9e-27  Score=236.03  Aligned_cols=225  Identities=20%  Similarity=0.255  Sum_probs=192.6

Q ss_pred             CCccEEEccCCcccccCChhHhhccCCCCCcCeEecCCCCCcccCCcccccCCCCceecccCccccccCCcCcCCCCCcc
Q 048402          271 SNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLI  350 (677)
Q Consensus       271 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  350 (677)
                      +.++.|++++|.++ .+|..+.    .+++|++|++++|.+. .+|..++.+++|++|++++|.++ .+|..+..+++|+
T Consensus        81 ~~l~~L~L~~n~l~-~lp~~l~----~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~  153 (328)
T 4fcg_A           81 PGRVALELRSVPLP-QFPDQAF----RLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLR  153 (328)
T ss_dssp             TTCCEEEEESSCCS-SCCSCGG----GGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCC
T ss_pred             cceeEEEccCCCch-hcChhhh----hCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCC
Confidence            46677777777776 3343333    3788888999888888 78888888999999999999888 6788888899999


Q ss_pred             EEECcCCcccccCCccCcC---------CCCCCEEecCCCcccccCChhhhhccCCceEEEcCCCcccccCCccccCCCC
Q 048402          351 WLLLGKNRLSGTIPVSLKN---------CTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAF  421 (677)
Q Consensus       351 ~L~l~~n~~~~~~~~~~~~---------l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  421 (677)
                      .|++++|++.+.+|..+..         +++|++|++++|.+. .+|..+. .+++|++|++++|.+++ +|..+..+++
T Consensus       154 ~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~-~l~~L~~L~L~~N~l~~-l~~~l~~l~~  230 (328)
T 4fcg_A          154 ELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIA-NLQNLKSLKIRNSPLSA-LGPAIHHLPK  230 (328)
T ss_dssp             EEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGG-GCTTCCEEEEESSCCCC-CCGGGGGCTT
T ss_pred             EEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhc-CCCCCCEEEccCCCCCc-CchhhccCCC
Confidence            9999998888788876654         999999999999998 8888765 79999999999999995 6667899999


Q ss_pred             CCEEeCCCCcCCCCcCccccccccCccccccCcccCccCCCCCCCcccccceeeEeecCCchhhhhhhccccEEEcccCc
Q 048402          422 LQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNN  501 (677)
Q Consensus       422 L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~  501 (677)
                      |++|++++|++.+.+|..+..+++|                                              +.|++++|+
T Consensus       231 L~~L~Ls~n~~~~~~p~~~~~l~~L----------------------------------------------~~L~L~~n~  264 (328)
T 4fcg_A          231 LEELDLRGCTALRNYPPIFGGRAPL----------------------------------------------KRLILKDCS  264 (328)
T ss_dssp             CCEEECTTCTTCCBCCCCTTCCCCC----------------------------------------------CEEECTTCT
T ss_pred             CCEEECcCCcchhhhHHHhcCCCCC----------------------------------------------CEEECCCCC
Confidence            9999999999998888877665554                                              999999999


Q ss_pred             ccccCCcccCCCCCCcEEeccCCcceeecccccccCCCCcEEECCCCccc
Q 048402          502 LTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLS  551 (677)
Q Consensus       502 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~  551 (677)
                      +.+.+|..+.++++|++|+|++|++.+.+|+.++++++|+.+++..+.+.
T Consensus       265 ~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          265 NLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA  314 (328)
T ss_dssp             TCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred             chhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence            99999999999999999999999999999999999999999999988776

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.93  E-value=1.7e-27  Score=240.11  Aligned_cols=226  Identities=22%  Similarity=0.258  Sum_probs=141.0

Q ss_pred             cCeEecCCCCCc-ccCCcccc-------cCCCCceecccCccccccCCcCc--CCCCCccEEECcCCcccccCCccCcCC
Q 048402          301 LIGLKLKDNSLQ-GEIPDCWM-------SYQNLEILELSNNKFTGKLPNSL--GSLTSLIWLLLGKNRLSGTIPVSLKNC  370 (677)
Q Consensus       301 L~~L~l~~n~l~-~~~~~~~~-------~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~l~~n~~~~~~~~~~~~l  370 (677)
                      ++.|++++|.+. ..+|..+.       ++++|++|++++|++++..|..+  ..+++|++|++++|++++. |..+..+
T Consensus        65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l  143 (312)
T 1wwl_A           65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAEL  143 (312)
T ss_dssp             HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHH
T ss_pred             HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHH
Confidence            445555555542 23333332       45566666666666655555544  5556666666666666544 4444444


Q ss_pred             -----CCCCEEecCCCcccccCChhhhhccCCceEEEcCCCccccc--CCccc--cCCCCCCEEeCCCCcCCCCcCcccc
Q 048402          371 -----TALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGP--LPTRL--CDLAFLQILDLADNNLFGTIPKCIN  441 (677)
Q Consensus       371 -----~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~--~~l~~L~~L~Ls~n~l~~~~p~~~~  441 (677)
                           ++|++|++++|++.+..|..+. .+++|++|++++|++.+.  .+..+  ..+++|++|++++|++++. +.   
T Consensus       144 ~~~~~~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~---  218 (312)
T 1wwl_A          144 QQWLKPGLKVLSIAQAHSLNFSCEQVR-VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETP-SG---  218 (312)
T ss_dssp             HTTCCTTCCEEEEESCSCCCCCTTTCC-CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCH-HH---
T ss_pred             HHhhcCCCcEEEeeCCCCccchHHHhc-cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcch-HH---
Confidence                 5666666666666533333332 556666666666665443  12222  6677777777777776521 10   


Q ss_pred             ccccCccccccCcccCccCCCCCCCcccccceeeEeecCCchhhhhhhccccEEEcccCcccccCC-cccCCCCCCcEEe
Q 048402          442 NITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIP-LEMTNLKATQSLN  520 (677)
Q Consensus       442 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~  520 (677)
                                                             .....+..+++|++|++++|++++..| ..+..+++|++|+
T Consensus       219 ---------------------------------------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~  259 (312)
T 1wwl_A          219 ---------------------------------------VCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLN  259 (312)
T ss_dssp             ---------------------------------------HHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEE
T ss_pred             ---------------------------------------HHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEE
Confidence                                                   001122335667888888888887664 4566788899999


Q ss_pred             ccCCcceeecccccccCCCCcEEECCCCcccccCccccccCCCCCEEEcccCcccc
Q 048402          521 FSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLSNNKLTG  576 (677)
Q Consensus       521 Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~  576 (677)
                      +++|+++ .+|..+.  ++|++|++++|++++. |. +..+++|++|++++|++++
T Consensus       260 Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          260 LSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             CTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred             CCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence            9999988 7777766  7899999999999855 66 8888999999999998875

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.93  E-value=3.1e-26  Score=231.46  Aligned_cols=240  Identities=18%  Similarity=0.148  Sum_probs=167.3

Q ss_pred             ccEEEccCCcccccCChhHhhccCCCCCcCeEecCCCCCcccCCcccccCCCCceecccCccccccCCcCcCCCCCccEE
Q 048402          273 LVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWL  352 (677)
Q Consensus       273 L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  352 (677)
                      ++..+++.+.+......    .+..+++|++|++++|.+++..|..|..+++|++|++++|.+++..+  +..+++|++|
T Consensus        12 l~i~~ls~~~l~~~~~~----~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L   85 (317)
T 3o53_A           12 YKIEKVTDSSLKQALAS----LRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTL   85 (317)
T ss_dssp             EEEESCCTTTHHHHHHH----HHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEE
T ss_pred             eeEeeccccchhhhHHH----HhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEE
Confidence            34445555555432222    22335678888888888877666778888888888888888875544  7778888888


Q ss_pred             ECcCCcccccCCccCcCCCCCCEEecCCCcccccCChhhhhccCCceEEEcCCCcccccCCccccCCCCCCEEeCCCCcC
Q 048402          353 LLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNL  432 (677)
Q Consensus       353 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l  432 (677)
                      ++++|++++..     ..++|++|++++|.+.+..+.    .+++|++|++++|++++..+..+..+++|++|++++|.+
T Consensus        86 ~Ls~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~----~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  156 (317)
T 3o53_A           86 DLNNNYVQELL-----VGPSIETLHAANNNISRVSCS----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEI  156 (317)
T ss_dssp             ECCSSEEEEEE-----ECTTCCEEECCSSCCSEEEEC----CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCC
T ss_pred             ECcCCcccccc-----CCCCcCEEECCCCccCCcCcc----ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCC
Confidence            88888877432     337888888888887643332    357788888888888876677777788888888888877


Q ss_pred             CCCcCccccccccCccccccCcccCccCCCCCCCcccccceeeEeecCCchhhhhhhccccEEEcccCcccccCCcccCC
Q 048402          433 FGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTN  512 (677)
Q Consensus       433 ~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~  512 (677)
                      .+..|..+.                                             ..+++|++|++++|.+++..  ....
T Consensus       157 ~~~~~~~~~---------------------------------------------~~l~~L~~L~L~~N~l~~~~--~~~~  189 (317)
T 3o53_A          157 DTVNFAELA---------------------------------------------ASSDTLEHLNLQYNFIYDVK--GQVV  189 (317)
T ss_dssp             CEEEGGGGG---------------------------------------------GGTTTCCEEECTTSCCCEEE--CCCC
T ss_pred             CcccHHHHh---------------------------------------------hccCcCCEEECCCCcCcccc--cccc
Confidence            654443321                                             12445578888888877552  2334


Q ss_pred             CCCCcEEeccCCcceeecccccccCCCCcEEECCCCcccccCccccccCCCCCEEEcccCcccc
Q 048402          513 LKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLSNNKLTG  576 (677)
Q Consensus       513 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~  576 (677)
                      +++|++|++++|++++ +|..+..+++|+.|++++|+++ .+|..+..+++|+.|++++|++.|
T Consensus       190 l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~  251 (317)
T 3o53_A          190 FAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHC  251 (317)
T ss_dssp             CTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBH
T ss_pred             cccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccC
Confidence            7788888888888874 4445777888888888888887 567777778888888888888873

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.93  E-value=1.5e-24  Score=236.21  Aligned_cols=261  Identities=27%  Similarity=0.306  Sum_probs=155.5

Q ss_pred             ccEEECCCccCccccCCccccccccEEEcccCCCCCCCCCCCCCccEEEccCCcccccCChhHhhccCCCCCcCeEecCC
Q 048402          229 LKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNNMSGPLPLISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKD  308 (677)
Q Consensus       229 L~~L~Ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~  308 (677)
                      ++.|++++|.++..+..+.  ++|+.|++++|.++. +|..+++|++|++++|.+++...        .+++|++|++++
T Consensus        42 l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~-lp~~l~~L~~L~Ls~N~l~~lp~--------~l~~L~~L~Ls~  110 (622)
T 3g06_A           42 NAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTS-LPALPPELRTLEVSGNQLTSLPV--------LPPGLLELSIFS  110 (622)
T ss_dssp             CCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSC-CCCCCTTCCEEEECSCCCSCCCC--------CCTTCCEEEECS
T ss_pred             CcEEEecCCCcCccChhhC--CCCcEEEecCCCCCC-CCCcCCCCCEEEcCCCcCCcCCC--------CCCCCCEEECcC
Confidence            4455555555443322222  455555555555543 22245566666666666553221        246666666666


Q ss_pred             CCCcccCCcccccCCCCceecccCccccccCCcCcCCCCCccEEECcCCcccccCCccCcCCCCCCEEecCCCcccccCC
Q 048402          309 NSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIP  388 (677)
Q Consensus       309 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  388 (677)
                      |.+++ +|.   .+++|+.|++++|++++ +|..   +++|+.|++++|++++ +|.   .+++|+.|++++|.+. .+|
T Consensus       111 N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~-~l~  177 (622)
T 3g06_A          111 NPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLT-SLP  177 (622)
T ss_dssp             CCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-CCC
T ss_pred             CcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCC-CCc
Confidence            66653 232   45566666666666663 3432   3666777777776664 232   2356677777777665 455


Q ss_pred             hhhhhccCCceEEEcCCCcccccCCccccCCCCCCEEeCCCCcCCCCcCccccccccCccccccCcccCccCCCCCCCcc
Q 048402          389 TWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDV  468 (677)
Q Consensus       389 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~  468 (677)
                          ..+++|+.|++++|.+++ +|.   .+++|+.|++++|.++ .+|..                             
T Consensus       178 ----~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~-~l~~~-----------------------------  219 (622)
T 3g06_A          178 ----MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLT-SLPAL-----------------------------  219 (622)
T ss_dssp             ----CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-SCCCC-----------------------------
T ss_pred             ----ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCccc-ccCCC-----------------------------
Confidence                135667777777777664 333   2356777777777665 22211                             


Q ss_pred             cccceeeEeecCCchhhhhhhccccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeecccccccCCCCcEEECCCC
Q 048402          469 ILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVN  548 (677)
Q Consensus       469 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N  548 (677)
                                          +++|+.|++++|.+++ +|   ..+++|+.|++++|+++ .+|.   .+++|+.|++++|
T Consensus       220 --------------------~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N  271 (622)
T 3g06_A          220 --------------------PSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRN  271 (622)
T ss_dssp             --------------------CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSS
T ss_pred             --------------------CCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCC
Confidence                                2345777777777774 44   44567777777777777 4554   4567777778777


Q ss_pred             cccccCccccccCCCCCEEEcccCcccccCCC
Q 048402          549 QLSGEIPQSMSNLMSLNHLNLSNNKLTGKIPS  580 (677)
Q Consensus       549 ~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~  580 (677)
                      +++ .+|..+..+++|+.|++++|++++.+|.
T Consensus       272 ~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~  302 (622)
T 3g06_A          272 QLT-RLPESLIHLSSETTVNLEGNPLSERTLQ  302 (622)
T ss_dssp             CCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred             CCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence            777 6677777777777788877777766554

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.93  E-value=5.1e-25  Score=218.11  Aligned_cols=210  Identities=20%  Similarity=0.182  Sum_probs=143.9

Q ss_pred             CCceecccCccccccCCcCcCCCCCccEEECcCCcccccCCccCcCCCCCCEEecCCCcccccCChhhhhccCCceEEEc
Q 048402          324 NLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLIL  403 (677)
Q Consensus       324 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L  403 (677)
                      +|++|++++|.+++..+..|..+++|++|++++|++++..+..|.++++|++|++++|.+.+..+..+ ..+++|++|++
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~l  107 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAF-SGLSSLQKLVA  107 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTT-TTCTTCCEEEC
T ss_pred             CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhh-cCCccccEEEC
Confidence            56666666666665555556666666666666666665555556666666666666666653333322 25666666666


Q ss_pred             CCCcccccCCccccCCCCCCEEeCCCCcCCCC-cCccccccccCccccccCcccCccCCCCCCCcccccceeeEeecCCc
Q 048402          404 RSNNFHGPLPTRLCDLAFLQILDLADNNLFGT-IPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEA  482 (677)
Q Consensus       404 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  482 (677)
                      ++|.+.+..+..+..+++|++|++++|++.+. +|..+.++++                                     
T Consensus       108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~-------------------------------------  150 (276)
T 2z62_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN-------------------------------------  150 (276)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTT-------------------------------------
T ss_pred             CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCC-------------------------------------
Confidence            66666655555566777777777777776542 3554444333                                     


Q ss_pred             hhhhhhhccccEEEcccCcccccCCcccCCCCCCc----EEeccCCcceeecccccccCCCCcEEECCCCcccccCcccc
Q 048402          483 IEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQ----SLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSM  558 (677)
Q Consensus       483 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~----~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l  558 (677)
                               |++|++++|++++..+..+..+++|+    +|++++|++++..+..+.. .+|++|++++|++++..+..|
T Consensus       151 ---------L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~  220 (276)
T 2z62_A          151 ---------LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIF  220 (276)
T ss_dssp             ---------CCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTT
T ss_pred             ---------CCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHh
Confidence                     37777777777766666676666666    8999999999665555544 589999999999997777778


Q ss_pred             ccCCCCCEEEcccCcccccCCCC
Q 048402          559 SNLMSLNHLNLSNNKLTGKIPSS  581 (677)
Q Consensus       559 ~~l~~L~~L~ls~N~l~~~~p~~  581 (677)
                      ..+++|++|++++|++.|.+|..
T Consensus       221 ~~l~~L~~L~l~~N~~~c~c~~l  243 (276)
T 2z62_A          221 DRLTSLQKIWLHTNPWDCSCPRI  243 (276)
T ss_dssp             TTCCSCCEEECCSSCBCCCTTTT
T ss_pred             cccccccEEEccCCcccccCCch
Confidence            99999999999999999998864

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.93  E-value=2.6e-24  Score=234.33  Aligned_cols=270  Identities=25%  Similarity=0.295  Sum_probs=175.3

Q ss_pred             CccEEEcccCcCccccccccCCCCCCCEEECcCCccccCCCcCCCCCCCCCEEEccccccccccChhhhhCCCCCCEEEe
Q 048402           82 ELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRV  161 (677)
Q Consensus        82 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~l~~~~~~~l~~L~~L~l  161 (677)
                      ++++|++++|.++ .+|..+.  ++|++|++++|.++ .+|.   .+++|++|++++|.++ .+|.    .+++|++|++
T Consensus        41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L~L  108 (622)
T 3g06_A           41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV----LPPGLLELSI  108 (622)
T ss_dssp             CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC----CCTTCCEEEE
T ss_pred             CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC----CCCCCCEEEC
Confidence            5777888877777 4555544  67777777777777 3444   4577777777777776 5554    4566666666


Q ss_pred             eccccceecCCCCCCCcCccEEEeecccCCCCCChhccCCCCCCEEEccCCCCCCccchHHHhccCCccEEECCCccCcc
Q 048402          162 GGNKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHG  241 (677)
Q Consensus       162 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~  241 (677)
                      ++|.++.                         +|.   .+++|+.|++++|.++.+..     .+++|++|++++|.+++
T Consensus       109 s~N~l~~-------------------------l~~---~l~~L~~L~L~~N~l~~lp~-----~l~~L~~L~Ls~N~l~~  155 (622)
T 3g06_A          109 FSNPLTH-------------------------LPA---LPSGLCKLWIFGNQLTSLPV-----LPPGLQELSVSDNQLAS  155 (622)
T ss_dssp             CSCCCCC-------------------------CCC---CCTTCCEEECCSSCCSCCCC-----CCTTCCEEECCSSCCSC
T ss_pred             cCCcCCC-------------------------CCC---CCCCcCEEECCCCCCCcCCC-----CCCCCCEEECcCCcCCC
Confidence            6665542                         222   34567777777777666432     13566666666666654


Q ss_pred             ccCCccccccccEEEcccCCCCCCCCCCCCCccEEEccCCcccccCChhHhhccCCCCCcCeEecCCCCCcccCCccccc
Q 048402          242 QITDLTKVTQLLFLSVHSNNMSGPLPLISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMS  321 (677)
Q Consensus       242 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~  321 (677)
                      ..                        ..+++|+.|++++|.+++..        ..+++|+.|++++|.+++ +|.   .
T Consensus       156 l~------------------------~~~~~L~~L~L~~N~l~~l~--------~~~~~L~~L~Ls~N~l~~-l~~---~  199 (622)
T 3g06_A          156 LP------------------------ALPSELCKLWAYNNQLTSLP--------MLPSGLQELSVSDNQLAS-LPT---L  199 (622)
T ss_dssp             CC------------------------CCCTTCCEEECCSSCCSCCC--------CCCTTCCEEECCSSCCSC-CCC---C
T ss_pred             cC------------------------CccCCCCEEECCCCCCCCCc--------ccCCCCcEEECCCCCCCC-CCC---c
Confidence            22                        22345555555555554421        124566666666666663 332   2


Q ss_pred             CCCCceecccCccccccCCcCcCCCCCccEEECcCCcccccCCccCcCCCCCCEEecCCCcccccCChhhhhccCCceEE
Q 048402          322 YQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVL  401 (677)
Q Consensus       322 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  401 (677)
                      +++|+.|++++|.++ .+|..   +++|+.|++++|++++ +|   ..+++|+.|++++|.+. .+|.    .+++|+.|
T Consensus       200 ~~~L~~L~L~~N~l~-~l~~~---~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~----~~~~L~~L  266 (622)
T 3g06_A          200 PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM----LPSGLLSL  266 (622)
T ss_dssp             CTTCCEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC----CCTTCCEE
T ss_pred             cchhhEEECcCCccc-ccCCC---CCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc----ccccCcEE
Confidence            356777777777776 34432   3677888888887774 34   34577888888888876 5665    36788888


Q ss_pred             EcCCCcccccCCccccCCCCCCEEeCCCCcCCCCcCccccccccC
Q 048402          402 ILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGM  446 (677)
Q Consensus       402 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l  446 (677)
                      ++++|+++ .+|..+..+++|+.|++++|++++..|..+..++..
T Consensus       267 ~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~~~  310 (622)
T 3g06_A          267 SVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSA  310 (622)
T ss_dssp             ECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHHHS
T ss_pred             eCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcccc
Confidence            88888888 667778888888888888888888777777666543

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.93  E-value=3.2e-26  Score=231.30  Aligned_cols=237  Identities=21%  Similarity=0.204  Sum_probs=130.3

Q ss_pred             CccEEEcccCcCccccccccCCCCCCCEEECcCCccccCCCcCCCCCCCCCEEEccccccccccChhhhhCCCCCCEEEe
Q 048402           82 ELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRV  161 (677)
Q Consensus        82 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~l~~~~~~~l~~L~~L~l  161 (677)
                      +|++|++++|.+++..|..|.++++|++|++++|.+++..+  +..+++|++|++++|.++ .++     ..++|+.|++
T Consensus        35 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~-~l~-----~~~~L~~L~l  106 (317)
T 3o53_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-ELL-----VGPSIETLHA  106 (317)
T ss_dssp             GCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEE-EEE-----ECTTCCEEEC
T ss_pred             CCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccc-ccc-----CCCCcCEEEC
Confidence            45555555555554444455555555555555555543322  455555555555555554 222     2245555555


Q ss_pred             eccccceecCCCCCCCcCccEEEeecccCCCCCChhccCCCCCCEEEccCCCCCCccchHHHhccCCccEEECCCccCcc
Q 048402          162 GGNKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHG  241 (677)
Q Consensus       162 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~  241 (677)
                      ++|.+++.....   .++|+.|++++|.+.+..+..+..+++|++|++++|.+++..+..+...+++|++|++++|.+++
T Consensus       107 ~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~  183 (317)
T 3o53_A          107 ANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD  183 (317)
T ss_dssp             CSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred             CCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc
Confidence            555555443332   23455666666666555555666677777777777777766565555556677777777777664


Q ss_pred             ccCCccccccccEEEcccCCCCCCCCCCCCCccEEEccCCcccccCChhHhhccCCCCCcCeEecCCCCCcccCCccccc
Q 048402          242 QITDLTKVTQLLFLSVHSNNMSGPLPLISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMS  321 (677)
Q Consensus       242 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~  321 (677)
                      .. ....+                     ++|++|++++|.+++..+. +    ..+++|+.|++++|.++ .+|..+..
T Consensus       184 ~~-~~~~l---------------------~~L~~L~Ls~N~l~~l~~~-~----~~l~~L~~L~L~~N~l~-~l~~~~~~  235 (317)
T 3o53_A          184 VK-GQVVF---------------------AKLKTLDLSSNKLAFMGPE-F----QSAAGVTWISLRNNKLV-LIEKALRF  235 (317)
T ss_dssp             EE-CCCCC---------------------TTCCEEECCSSCCCEECGG-G----GGGTTCSEEECTTSCCC-EECTTCCC
T ss_pred             cc-ccccc---------------------ccCCEEECCCCcCCcchhh-h----cccCcccEEECcCCccc-chhhHhhc
Confidence            42 22223                     3444455555544433222 2    22456666666666665 34555666


Q ss_pred             CCCCceecccCcccc-ccCCcCcCCCCCccEEECcCC
Q 048402          322 YQNLEILELSNNKFT-GKLPNSLGSLTSLIWLLLGKN  357 (677)
Q Consensus       322 l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n  357 (677)
                      +++|+.|++++|.+. +..+..+..+++|+.++++++
T Consensus       236 l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~  272 (317)
T 3o53_A          236 SQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV  272 (317)
T ss_dssp             CTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             CCCCCEEEccCCCccCcCHHHHHhccccceEEECCCc
Confidence            666666666666665 455555666666666666633

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.93  E-value=2.3e-25  Score=238.12  Aligned_cols=228  Identities=18%  Similarity=0.136  Sum_probs=189.8

Q ss_pred             hhHhhccCCCCCcCeEecCCCCCcccCCcccccCCCCceecccCccccccCCcCcCCCCCccEEECcCCcccccCCccCc
Q 048402          289 HYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLK  368 (677)
Q Consensus       289 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~  368 (677)
                      ..+......+++|+.|++++|.+++..|..|..+++|++|+|++|.+++..|  +..+++|+.|++++|.+++..+    
T Consensus        24 ~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~----   97 (487)
T 3oja_A           24 QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV----   97 (487)
T ss_dssp             HHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE----
T ss_pred             HHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC----
Confidence            3343333445689999999999998888899999999999999999987665  8899999999999999985433    


Q ss_pred             CCCCCCEEecCCCcccccCChhhhhccCCceEEEcCCCcccccCCccccCCCCCCEEeCCCCcCCCCcCccccccccCcc
Q 048402          369 NCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVA  448 (677)
Q Consensus       369 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~  448 (677)
                       .++|++|++++|.+.+..+.    .+++|+.|++++|.+++..|..+..+++|+.|++++|.+++..|..+.       
T Consensus        98 -~~~L~~L~L~~N~l~~~~~~----~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~-------  165 (487)
T 3oja_A           98 -GPSIETLHAANNNISRVSCS----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA-------  165 (487)
T ss_dssp             -CTTCCEEECCSSCCCCEEEC----CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGG-------
T ss_pred             -CCCcCEEECcCCcCCCCCcc----ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHh-------
Confidence             38999999999999854433    468999999999999988888899999999999999999876665543       


Q ss_pred             ccccCcccCccCCCCCCCcccccceeeEeecCCchhhhhhhccccEEEcccCcccccCCcccCCCCCCcEEeccCCccee
Q 048402          449 ANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTG  528 (677)
Q Consensus       449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~  528 (677)
                                                            ..+++|+.|+|++|.+++..+  ...+++|+.|+|++|.+++
T Consensus       166 --------------------------------------~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~  205 (487)
T 3oja_A          166 --------------------------------------ASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAF  205 (487)
T ss_dssp             --------------------------------------GGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCE
T ss_pred             --------------------------------------hhCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCC
Confidence                                                  124556999999999997633  4468999999999999996


Q ss_pred             ecccccccCCCCcEEECCCCcccccCccccccCCCCCEEEcccCcccc
Q 048402          529 RIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLSNNKLTG  576 (677)
Q Consensus       529 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~  576 (677)
                      . |..+..+++|+.|++++|.+++ +|..+..+++|+.|++++|++.|
T Consensus       206 ~-~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c  251 (487)
T 3oja_A          206 M-GPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHC  251 (487)
T ss_dssp             E-CGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCH
T ss_pred             C-CHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcC
Confidence            5 4458999999999999999994 78889999999999999999984

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.93  E-value=8.4e-27  Score=235.02  Aligned_cols=248  Identities=20%  Similarity=0.256  Sum_probs=204.2

Q ss_pred             CCCcCeEecCCCCCcccCCcccccCCCCceecccCcccc-ccCCcCcC-------CCCCccEEECcCCcccccCCccC--
Q 048402          298 PKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFT-GKLPNSLG-------SLTSLIWLLLGKNRLSGTIPVSL--  367 (677)
Q Consensus       298 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~-------~l~~L~~L~l~~n~~~~~~~~~~--  367 (677)
                      .++|+++++++|.+  .+|..+...  |+.|++++|.+. ..+|..+.       ++++|++|++++|++++..|..+  
T Consensus        42 ~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  117 (312)
T 1wwl_A           42 GRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE  117 (312)
T ss_dssp             EEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred             CCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence            46788999999998  667666554  999999999995 44565554       68999999999999998888876  


Q ss_pred             cCCCCCCEEecCCCcccccCChhhhhcc-----CCceEEEcCCCcccccCCccccCCCCCCEEeCCCCcCCCCc--Cccc
Q 048402          368 KNCTALESLDVGENEFVGNIPTWTGERF-----SRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTI--PKCI  440 (677)
Q Consensus       368 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l-----~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--p~~~  440 (677)
                      ..+++|++|++++|.+.+. |..+. .+     ++|++|++++|++.+..+..+..+++|++|++++|++.+.+  |..+
T Consensus       118 ~~l~~L~~L~Ls~N~l~~~-~~~~~-~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  195 (312)
T 1wwl_A          118 ATGPDLNILNLRNVSWATR-DAWLA-ELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL  195 (312)
T ss_dssp             CCSCCCSEEEEESCBCSSS-SSHHH-HHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS
T ss_pred             hcCCCccEEEccCCCCcch-hHHHH-HHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHH
Confidence            8999999999999999865 76554 45     89999999999999888899999999999999999976542  2111


Q ss_pred             cccccCccccccCcccCccCCCCCCCcccccceeeEeecCCchhhhhhhccccEEEcccCcccc---cCCcccCCCCCCc
Q 048402          441 NNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTK---SIPLEMTNLKATQ  517 (677)
Q Consensus       441 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~---~~~~~l~~l~~L~  517 (677)
                                                                  .+..+++|++|++++|++++   .....+.++++|+
T Consensus       196 --------------------------------------------~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~  231 (312)
T 1wwl_A          196 --------------------------------------------CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQ  231 (312)
T ss_dssp             --------------------------------------------CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCS
T ss_pred             --------------------------------------------HhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCC
Confidence                                                        01235667999999999983   2224456889999


Q ss_pred             EEeccCCcceeecc-cccccCCCCcEEECCCCcccccCccccccCCCCCEEEcccCcccccCCCCCCCCCcCcccccCCC
Q 048402          518 SLNFSHNSFTGRIP-ESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLSNNKLTGKIPSSTQLQSFDASSFTGND  596 (677)
Q Consensus       518 ~L~Ls~n~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n~  596 (677)
                      +|++++|++++..| ..+..+++|++|++++|+++ .+|..+.  ++|++||+++|++++. |....+..++.+++.+|.
T Consensus       232 ~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~~~~l~~L~~L~L~~N~  307 (312)
T 1wwl_A          232 GLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PSPDELPQVGNLSLKGNP  307 (312)
T ss_dssp             EEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CCTTTSCEEEEEECTTCT
T ss_pred             EEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hhHhhCCCCCEEeccCCC
Confidence            99999999998775 56778899999999999999 7888776  8999999999999977 667778888888888887


Q ss_pred             CCC
Q 048402          597 LCG  599 (677)
Q Consensus       597 l~~  599 (677)
                      +.+
T Consensus       308 l~~  310 (312)
T 1wwl_A          308 FLD  310 (312)
T ss_dssp             TTC
T ss_pred             CCC
Confidence            664

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.93  E-value=4.1e-28  Score=268.56  Aligned_cols=414  Identities=14%  Similarity=0.077  Sum_probs=240.8

Q ss_pred             EEEccCCCCceecCCccccCCCCCCEEecCCCCCCC--cc------------CchhhcCCCCCCEEEccCCcCCcccchh
Q 048402            6 YLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPE--GR------------IPRSMASLCNLKSINLRGVHLSQEISEI   71 (677)
Q Consensus         6 ~L~Ls~n~~~~~i~~~~~~~l~~L~~L~Ls~~~~~~--~~------------~~~~l~~l~~L~~L~l~~n~l~~~~~~~   71 (677)
                      .++++.+...  .+...+.++++|++|+++++....  +.            ++.....+++|++|++++|.+++..+..
T Consensus        47 ~l~~~~~~~~--~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~  124 (594)
T 2p1m_B           47 KVFIGNCYAV--SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLEL  124 (594)
T ss_dssp             EEEESSTTSS--CHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHH
T ss_pred             EEeecccccc--CHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHH
Confidence            4555554332  224456677777777777332111  00            1122345677888888877777666555


Q ss_pred             hh-hccccCcCCccEEEcccC-cCccc-cccccCCCCCCCEEECcCCccccCCCcCC----CCCCCCCEEEccccc--cc
Q 048402           72 LN-IFSGCVSIELESLDLRSS-SISGH-LTDQLGQFKNLDNLDLANNSIVGPIPQSL----GHLSNLRVLQIYNNK--LN  142 (677)
Q Consensus        72 ~~-~l~~~~~~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~----~~l~~L~~L~L~~n~--i~  142 (677)
                      +. .++     +|++|++++| .++.. ++..+.++++|++|++++|.+++..+..+    ..+++|++|++++|.  +.
T Consensus       125 l~~~~~-----~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~  199 (594)
T 2p1m_B          125 IAKSFK-----NFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVS  199 (594)
T ss_dssp             HHHHCT-----TCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCC
T ss_pred             HHHhCC-----CCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCC
Confidence            54 566     7888888777 44432 34444567778888888777665443333    356678888887775  22


Q ss_pred             cccChhhhhCCCCCCEEEeeccccceecCCCCCCCcCccEEEeecccCC------CCCChhccCCCCCCEE-EccCCCCC
Q 048402          143 GTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQLVALGFHNCYVG------SRFPQWLHSQKHLQYL-NLLNSGMS  215 (677)
Q Consensus       143 ~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~------~~~~~~~~~l~~L~~L-~l~~n~i~  215 (677)
                      .......+.++++|+.|++++|......+..+..+++|+.|+++.+...      ..++..+.++++|+.| .+.+....
T Consensus       200 ~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~  279 (594)
T 2p1m_B          200 FSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPA  279 (594)
T ss_dssp             HHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGG
T ss_pred             HHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchh
Confidence            1111112345677888888776322223444455667777775544210      0123356677777777 33322211


Q ss_pred             CccchHHHhccCCccEEECCCccCcccc-CC-ccccccccEEEcccCCCCCCC-C---CCCCCccEEEccC---------
Q 048402          216 DLFPIRFLKSAFQLKFLDLGLNQFHGQI-TD-LTKVTQLLFLSVHSNNMSGPL-P---LISSNLVYLDLSN---------  280 (677)
Q Consensus       216 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~-~~-~~~~~~L~~L~l~~n~~~~~~-~---~~~~~L~~L~l~~---------  280 (677)
                      . .+ .+...+++|++|++++|.+++.. .. ...+++|+.|++++| +.... +   ..+++|++|++++         
T Consensus       280 ~-l~-~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~  356 (594)
T 2p1m_B          280 Y-LP-AVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPN  356 (594)
T ss_dssp             G-GG-GGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCS
T ss_pred             h-HH-HHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccC
Confidence            1 11 22234567777777777755321 11 234477777777766 32111 1   1256788887733         


Q ss_pred             CcccccCChhHhhccCCCCCcCeEecCCCCCcccCCcccc-cCCCCceeccc--C----cccccc-----CCcCcCCCCC
Q 048402          281 NSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWM-SYQNLEILELS--N----NKFTGK-----LPNSLGSLTS  348 (677)
Q Consensus       281 n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~--~----n~l~~~-----~~~~~~~l~~  348 (677)
                      +.+++.....+.   ..+++|+.|.+..+.+++.....+. .+++|+.|+++  +    +.+++.     ++..+..+++
T Consensus       357 ~~l~~~~l~~l~---~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~  433 (594)
T 2p1m_B          357 VALTEQGLVSVS---MGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKD  433 (594)
T ss_dssp             SCCCHHHHHHHH---HHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTT
T ss_pred             CCCCHHHHHHHH---HhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCC
Confidence            333322222222   1267888888877777765554554 57888888888  3    445421     1122556778


Q ss_pred             ccEEECcCCcccccCCccCcC-CCCCCEEecCCCcccccCChhhhhccCCceEEEcCCCcccccCCc-cccCCCCCCEEe
Q 048402          349 LIWLLLGKNRLSGTIPVSLKN-CTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPT-RLCDLAFLQILD  426 (677)
Q Consensus       349 L~~L~l~~n~~~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~  426 (677)
                      |+.|++++ .++......+.. +++|++|++++|.+++.....+...+++|++|++++|.+++.... ....+++|+.|+
T Consensus       434 L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~  512 (594)
T 2p1m_B          434 LRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLW  512 (594)
T ss_dssp             CCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEE
T ss_pred             ccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEe
Confidence            88888876 555444444444 788888888888886555555544688888888888888643322 344578888888


Q ss_pred             CCCCcCC
Q 048402          427 LADNNLF  433 (677)
Q Consensus       427 Ls~n~l~  433 (677)
                      +++|+++
T Consensus       513 l~~~~~~  519 (594)
T 2p1m_B          513 MSSCSVS  519 (594)
T ss_dssp             EESSCCB
T ss_pred             eeCCCCC
Confidence            8888874

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.93  E-value=7e-28  Score=266.65  Aligned_cols=85  Identities=9%  Similarity=0.037  Sum_probs=49.6

Q ss_pred             hccccEEEcccCcccccCCccc-CCCCCCcEEeccCCcceeeccc-ccccCCCCcEEECCCCcccccCcccc-ccCCCCC
Q 048402          489 LNLVKETDVSRNNLTKSIPLEM-TNLKATQSLNFSHNSFTGRIPE-SIGAMRSLESIDFSVNQLSGEIPQSM-SNLMSLN  565 (677)
Q Consensus       489 l~~L~~L~Ls~n~l~~~~~~~l-~~l~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~  565 (677)
                      +++|+.|++++|.+++.....+ .++++|++|++++|.+++.... ....+++|++|++++|+++......+ ..++.|+
T Consensus       455 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~  534 (594)
T 2p1m_B          455 AKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLN  534 (594)
T ss_dssp             CTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEE
T ss_pred             chhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCE
Confidence            4556777777777655433333 5567777777777777543332 33456777777777777654333334 3456665


Q ss_pred             EEEcccCc
Q 048402          566 HLNLSNNK  573 (677)
Q Consensus       566 ~L~ls~N~  573 (677)
                      ...+..+.
T Consensus       535 i~~~~~~~  542 (594)
T 2p1m_B          535 VEVIDERG  542 (594)
T ss_dssp             EEEECSSS
T ss_pred             EEEecCCC
Confidence            55555443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.92  E-value=3.5e-24  Score=211.11  Aligned_cols=207  Identities=19%  Similarity=0.219  Sum_probs=153.0

Q ss_pred             CCceecccCccccccCCcCcCCCCCccEEECcCCcccccCCccCcCCCCCCEEecCCCcccccCChhhhhccCCceEEEc
Q 048402          324 NLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLIL  403 (677)
Q Consensus       324 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L  403 (677)
                      +.+.++++++.++ .+|..+.  ++++.|++++|++++..+..|.++++|++|++++|.+. .++...+..+++|++|++
T Consensus        17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l   92 (270)
T 2o6q_A           17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWV   92 (270)
T ss_dssp             TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEEC
T ss_pred             CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEEC
Confidence            3556666666666 3444332  45666666666666555556666677777777776665 555555445677777777


Q ss_pred             CCCcccccCCccccCCCCCCEEeCCCCcCCCCcCccccccccCccccccCcccCccCCCCCCCcccccceeeEeecCCch
Q 048402          404 RSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAI  483 (677)
Q Consensus       404 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  483 (677)
                      ++|.+.+..+..+..+++|++|++++|++.+..|..+..++                                       
T Consensus        93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~---------------------------------------  133 (270)
T 2o6q_A           93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLT---------------------------------------  133 (270)
T ss_dssp             CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCT---------------------------------------
T ss_pred             CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCc---------------------------------------
Confidence            77777765556667777788888887777655554444433                                       


Q ss_pred             hhhhhhccccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeecccccccCCCCcEEECCCCcccccCccccccCCC
Q 048402          484 EYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMS  563 (677)
Q Consensus       484 ~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~  563 (677)
                             +|++|++++|.+++..+..|..+++|++|++++|++++..+..|.++++|++|++++|++++..+..|..+++
T Consensus       134 -------~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~  206 (270)
T 2o6q_A          134 -------KLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEK  206 (270)
T ss_dssp             -------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred             -------CCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccC
Confidence                   3478888888888767777899999999999999999777778999999999999999999777777999999


Q ss_pred             CCEEEcccCcccccCCC
Q 048402          564 LNHLNLSNNKLTGKIPS  580 (677)
Q Consensus       564 L~~L~ls~N~l~~~~p~  580 (677)
                      |+.|++++|++.|.++.
T Consensus       207 L~~L~l~~N~~~c~c~~  223 (270)
T 2o6q_A          207 LKMLQLQENPWDCTCNG  223 (270)
T ss_dssp             CCEEECCSSCBCCSSSS
T ss_pred             CCEEEecCCCeeCCCcc
Confidence            99999999999998864

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=1.3e-25  Score=239.86  Aligned_cols=236  Identities=22%  Similarity=0.189  Sum_probs=190.5

Q ss_pred             CCCccEEEccCCcccccCChhHhhccCCCCCcCeEecCCCCCcccCCcccccCCCCceecccCccccccCCcCcCCCCCc
Q 048402          270 SSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSL  349 (677)
Q Consensus       270 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  349 (677)
                      +++|++|++++|.+++..+..+    ..+++|+.|++++|.+++..|  +..+++|++|++++|.+++..+     .++|
T Consensus        33 ~~~L~~L~Ls~n~l~~~~~~~~----~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L  101 (487)
T 3oja_A           33 AWNVKELDLSGNPLSQISAADL----APFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSI  101 (487)
T ss_dssp             GGGCCEEECCSSCCCCCCGGGG----TTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTC
T ss_pred             CCCccEEEeeCCcCCCCCHHHH----hCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCc
Confidence            3467777777777776655544    448889999999998886655  8888999999999999885432     3789


Q ss_pred             cEEECcCCcccccCCccCcCCCCCCEEecCCCcccccCChhhhhccCCceEEEcCCCcccccCCcccc-CCCCCCEEeCC
Q 048402          350 IWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLC-DLAFLQILDLA  428 (677)
Q Consensus       350 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~Ls  428 (677)
                      +.|++++|.+++..+.   .+++|+.|++++|.+.+..|..+. .+++|++|++++|.+++..|..+. .+++|+.|+++
T Consensus       102 ~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls  177 (487)
T 3oja_A          102 ETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEG-CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ  177 (487)
T ss_dssp             CEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGG-GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECT
T ss_pred             CEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhc-CCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecC
Confidence            9999999999876654   357899999999999866565554 689999999999999987777775 78999999999


Q ss_pred             CCcCCCCcCccccccccCccccccCcccCccCCCCCCCcccccceeeEeecCCchhhhhhhccccEEEcccCcccccCCc
Q 048402          429 DNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPL  508 (677)
Q Consensus       429 ~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~  508 (677)
                      +|.+++..+..                                                .+++|+.|++++|.+++.+| 
T Consensus       178 ~N~l~~~~~~~------------------------------------------------~l~~L~~L~Ls~N~l~~~~~-  208 (487)
T 3oja_A          178 YNFIYDVKGQV------------------------------------------------VFAKLKTLDLSSNKLAFMGP-  208 (487)
T ss_dssp             TSCCCEEECCC------------------------------------------------CCTTCCEEECCSSCCCEECG-
T ss_pred             CCccccccccc------------------------------------------------cCCCCCEEECCCCCCCCCCH-
Confidence            99887442211                                                14567999999999997544 


Q ss_pred             ccCCCCCCcEEeccCCcceeecccccccCCCCcEEECCCCccc-ccCccccccCCCCCEEEcc
Q 048402          509 EMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLS-GEIPQSMSNLMSLNHLNLS  570 (677)
Q Consensus       509 ~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~ls  570 (677)
                      .+..+++|+.|++++|.++ .+|..+..+++|+.|++++|.+. +.+|..+..++.|+.++++
T Consensus       209 ~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          209 EFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             GGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred             hHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence            5899999999999999999 47888999999999999999998 6778888888888888886

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.91  E-value=1.1e-23  Score=209.23  Aligned_cols=207  Identities=19%  Similarity=0.183  Sum_probs=150.9

Q ss_pred             cccCCCCceecccCccccccCCcCcCCCCCccEEECcCCcccccCCccCcCCCCCCEEecCCCcccccCChhhhhccCCc
Q 048402          319 WMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRM  398 (677)
Q Consensus       319 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L  398 (677)
                      +.+++++++++++++.++ .+|..+.  +.++.|++++|.+++..+..|..+++|++|++++|.+.+ ++..  ..+++|
T Consensus         6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~--~~l~~L   79 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQVD--GTLPVL   79 (290)
T ss_dssp             EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EECC--SCCTTC
T ss_pred             ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-ccCC--CCCCcC
Confidence            445566666666666665 3443332  466666666666666666666667777777777776653 3322  256777


Q ss_pred             eEEEcCCCcccccCCccccCCCCCCEEeCCCCcCCCCcCccccccccCccccccCcccCccCCCCCCCcccccceeeEee
Q 048402          399 VVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVS  478 (677)
Q Consensus       399 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  478 (677)
                      ++|++++|+++ .+|..+..+++|++|++++|++++..|..|..+++                                 
T Consensus        80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~---------------------------------  125 (290)
T 1p9a_G           80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGE---------------------------------  125 (290)
T ss_dssp             CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTT---------------------------------
T ss_pred             CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCC---------------------------------
Confidence            77777777776 55666777788888888888777555555554443                                 


Q ss_pred             cCCchhhhhhhccccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeecccccccCCCCcEEECCCCcccccCcccc
Q 048402          479 EGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSM  558 (677)
Q Consensus       479 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l  558 (677)
                                   |++|++++|++++..+..|..+++|+.|++++|++++..+..|..+++|+.|++++|+++ .+|..+
T Consensus       126 -------------L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~  191 (290)
T 1p9a_G          126 -------------LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGF  191 (290)
T ss_dssp             -------------CCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTT
T ss_pred             -------------CCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhh
Confidence                         478888888888777777889999999999999999666667888999999999999998 778888


Q ss_pred             ccCCCCCEEEcccCcccccCC
Q 048402          559 SNLMSLNHLNLSNNKLTGKIP  579 (677)
Q Consensus       559 ~~l~~L~~L~ls~N~l~~~~p  579 (677)
                      ...++|+.+++++|++.|.+.
T Consensus       192 ~~~~~L~~l~L~~Np~~C~c~  212 (290)
T 1p9a_G          192 FGSHLLPFAFLHGNPWLCNCE  212 (290)
T ss_dssp             TTTCCCSEEECCSCCBCCSGG
T ss_pred             cccccCCeEEeCCCCccCcCc
Confidence            888899999999999988653

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.90  E-value=5.3e-23  Score=203.56  Aligned_cols=227  Identities=19%  Similarity=0.180  Sum_probs=169.1

Q ss_pred             EEEccCCCCceecCCccccCCCCCCEEecCCCCCCCccCchhhcCCCCCCEEEccCCcCCcccchhhhhccccCcCCccE
Q 048402            6 YLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVSIELES   85 (677)
Q Consensus         6 ~L~Ls~n~~~~~i~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~L~~   85 (677)
                      ..+-++..+. .+ |..+.  ++|++|+++ ++.+.+..+..+.++++|++|++++|.+++..+..+..++     +|++
T Consensus        11 ~~~c~~~~l~-~i-p~~l~--~~l~~L~ls-~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-----~L~~   80 (276)
T 2z62_A           11 TYQCMELNFY-KI-PDNLP--FSTKNLDLS-FNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLS-----HLST   80 (276)
T ss_dssp             EEECTTSCCS-SC-CSSSC--TTCCEEECT-TCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCT-----TCCE
T ss_pred             eEEecCCCcc-cc-CCCCC--CCccEEECC-CCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCc-----CCCE
Confidence            3455555555 45 44332  568888888 6667766666788888888888888888877777777777     8888


Q ss_pred             EEcccCcCccccccccCCCCCCCEEECcCCccccCCCcCCCCCCCCCEEEcccccccc-ccChhhhhCCCCCCEEEeecc
Q 048402           86 LDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNG-TLSEIHFSNLTKLSWFRVGGN  164 (677)
Q Consensus        86 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~-~l~~~~~~~l~~L~~L~l~~n  164 (677)
                      |++++|.+++..+..|.++++|++|++++|.+.+..+..+..+++|++|++++|.+++ .+|. .+.++++|+.|++++|
T Consensus        81 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~-~~~~l~~L~~L~Ls~N  159 (276)
T 2z62_A           81 LILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE-YFSNLTNLEHLDLSSN  159 (276)
T ss_dssp             EECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCG-GGGGCTTCCEEECCSS
T ss_pred             EECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCch-hhccCCCCCEEECCCC
Confidence            8888888887777788888888888888888886666678888888888888888863 2455 6888888888888888


Q ss_pred             ccceecCCCCCCCcCcc----EEEeecccCCCCCChhccCCCCCCEEEccCCCCCCccchHHHhccCCccEEECCCccCc
Q 048402          165 KLTLEVRHDWIPPFQLV----ALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFH  240 (677)
Q Consensus       165 ~l~~~~~~~~~~~~~L~----~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~  240 (677)
                      .+++.....+..+.+++    .|++++|.+.+..+..+.. .+|++|++++|.+++..+ ..+..+++|++|++++|.+.
T Consensus       160 ~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~N~~~  237 (276)
T 2z62_A          160 KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPD-GIFDRLTSLQKIWLHTNPWD  237 (276)
T ss_dssp             CCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCT-TTTTTCCSCCEEECCSSCBC
T ss_pred             CCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCH-hHhcccccccEEEccCCccc
Confidence            88877766676666666    7888888887665555443 478888888888887644 34456788888888888887


Q ss_pred             cccCC
Q 048402          241 GQITD  245 (677)
Q Consensus       241 ~~~~~  245 (677)
                      +..+.
T Consensus       238 c~c~~  242 (276)
T 2z62_A          238 CSCPR  242 (276)
T ss_dssp             CCTTT
T ss_pred             ccCCc
Confidence            66543

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.90  E-value=2.1e-22  Score=198.35  Aligned_cols=183  Identities=22%  Similarity=0.236  Sum_probs=92.6

Q ss_pred             CCCEEEccCCcCCcccchhhhhccccCcCCccEEEcccCcCccccccccCCCCCCCEEECcCCccccCCCcCCCCCCCCC
Q 048402           53 NLKSINLRGVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLR  132 (677)
Q Consensus        53 ~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  132 (677)
                      ++++|++++|.+++..+..+..++     +|++|++++|.++...+..|.++++|++|++++|.++...+..|..+++|+
T Consensus        38 ~l~~L~l~~n~l~~~~~~~~~~l~-----~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  112 (270)
T 2o6q_A           38 DTKKLDLQSNKLSSLPSKAFHRLT-----KLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLA  112 (270)
T ss_dssp             TCSEEECCSSCCSCCCTTSSSSCT-----TCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCC
T ss_pred             CCCEEECcCCCCCeeCHHHhcCCC-----CCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCC
Confidence            445555555554444444444444     455555555555443333444455555555555555444444444555555


Q ss_pred             EEEccccccccccChhhhhCCCCCCEEEeeccccceecCCCCCCCcCccEEEeecccCCCCCChhccCCCCCCEEEccCC
Q 048402          133 VLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNS  212 (677)
Q Consensus       133 ~L~L~~n~i~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n  212 (677)
                      +|++++|.++ .++...|.++++|+.|++++|.++......|..+++|+.|++++|.+....+..+..+++|++|++++|
T Consensus       113 ~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N  191 (270)
T 2o6q_A          113 ELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNN  191 (270)
T ss_dssp             EEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             EEECCCCccC-eeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCC
Confidence            5555555554 233324445555555555555554444444445555555555555555554555556666666666666


Q ss_pred             CCCCccchHHHhccCCccEEECCCccCccc
Q 048402          213 GMSDLFPIRFLKSAFQLKFLDLGLNQFHGQ  242 (677)
Q Consensus       213 ~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~  242 (677)
                      .+++..+.. +..+++|+.|++++|.+...
T Consensus       192 ~l~~~~~~~-~~~l~~L~~L~l~~N~~~c~  220 (270)
T 2o6q_A          192 QLKRVPEGA-FDSLEKLKMLQLQENPWDCT  220 (270)
T ss_dssp             CCSCCCTTT-TTTCTTCCEEECCSSCBCCS
T ss_pred             cCCcCCHHH-hccccCCCEEEecCCCeeCC
Confidence            665543322 23455666666666665543

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.89  E-value=2.9e-23  Score=204.61  Aligned_cols=221  Identities=21%  Similarity=0.238  Sum_probs=148.5

Q ss_pred             cCeEecCCCCCcccCCcccccCCCCceecccCccccccCCcCcCCCCCccEEECcCCcccccCCccCcCCCCCCEEecCC
Q 048402          301 LIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGE  380 (677)
Q Consensus       301 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~  380 (677)
                      +..+.+..+.+....  ....+++|+.|++++|.++. . ..+..+++|+.|++++|.+++.  ..+..+++|++|++++
T Consensus        21 l~~l~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~   94 (272)
T 3rfs_A           21 TIKANLKKKSVTDAV--TQNELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTG   94 (272)
T ss_dssp             HHHHHHTCSCTTSEE--CHHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTT
T ss_pred             HHHHHhcCccccccc--ccccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCC
Confidence            334455555444322  24456667777777766652 2 2366667777777777776642  3566677777777777


Q ss_pred             CcccccCChhhhhccCCceEEEcCCCcccccCCccccCCCCCCEEeCCCCcCCCCcCccccccccCccccccCcccCccC
Q 048402          381 NEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYL  460 (677)
Q Consensus       381 n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~  460 (677)
                      |.+. .++...+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..++                
T Consensus        95 n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~----------------  157 (272)
T 3rfs_A           95 NQLQ-SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLT----------------  157 (272)
T ss_dssp             SCCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT----------------
T ss_pred             CccC-ccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCc----------------
Confidence            7776 34433333567777777777777766666677777777777777777654444444433                


Q ss_pred             CCCCCCcccccceeeEeecCCchhhhhhhccccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeecccccccCCCC
Q 048402          461 PLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSL  540 (677)
Q Consensus       461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L  540 (677)
                                                    +|+.|++++|++++..+..+..+++|++|++++|++++..|..+..+++|
T Consensus       158 ------------------------------~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  207 (272)
T 3rfs_A          158 ------------------------------NLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSL  207 (272)
T ss_dssp             ------------------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred             ------------------------------cCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCC
Confidence                                          34777777777776666677888888888888888887777777888888


Q ss_pred             cEEECCCCcccccCccccccCCCCCEEEcccCcccccCCCC
Q 048402          541 ESIDFSVNQLSGEIPQSMSNLMSLNHLNLSNNKLTGKIPSS  581 (677)
Q Consensus       541 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~  581 (677)
                      +.|++++|.+.+.       ++.|+.+++++|.++|.+|..
T Consensus       208 ~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~  241 (272)
T 3rfs_A          208 QYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNS  241 (272)
T ss_dssp             CEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCT
T ss_pred             CEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCc
Confidence            8888888877643       346778888888888888763

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.89  E-value=5.7e-23  Score=202.54  Aligned_cols=208  Identities=20%  Similarity=0.239  Sum_probs=163.4

Q ss_pred             CCCcCeEecCCCCCcccCCcccccCCCCceecccCccccccCCcCcCCCCCccEEECcCCcccccCCccCcCCCCCCEEe
Q 048402          298 PKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLD  377 (677)
Q Consensus       298 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~  377 (677)
                      +++|+.|++++|.+.. + ..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++..+..|..+++|++|+
T Consensus        40 l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  115 (272)
T 3rfs_A           40 LNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV  115 (272)
T ss_dssp             HTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred             ccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence            5677788888777763 2 2467788888888888888752  4677888888888888888877777778888888888


Q ss_pred             cCCCcccccCChhhhhccCCceEEEcCCCcccccCCccccCCCCCCEEeCCCCcCCCCcCccccccccCccccccCcccC
Q 048402          378 VGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQ  457 (677)
Q Consensus       378 l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~  457 (677)
                      +++|.+. .++...+..+++|++|++++|.+++..+..+..+++|+.|++++|++++..+..+..++             
T Consensus       116 L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-------------  181 (272)
T 3rfs_A          116 LVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLT-------------  181 (272)
T ss_dssp             CTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-------------
T ss_pred             CCCCcCC-ccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCc-------------
Confidence            8888887 44444444688888888888888877777778888999999999988765555444444             


Q ss_pred             ccCCCCCCCcccccceeeEeecCCchhhhhhhccccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeecccccccC
Q 048402          458 QYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAM  537 (677)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l  537 (677)
                                                       +|+.|++++|++++..+..+..+++|+.|++++|.+.+.       +
T Consensus       182 ---------------------------------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~  221 (272)
T 3rfs_A          182 ---------------------------------QLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------C  221 (272)
T ss_dssp             ---------------------------------TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------T
T ss_pred             ---------------------------------cCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------C
Confidence                                             448899999999988888889999999999999988744       4


Q ss_pred             CCCcEEECCCCcccccCccccccCCC
Q 048402          538 RSLESIDFSVNQLSGEIPQSMSNLMS  563 (677)
Q Consensus       538 ~~L~~L~Ls~N~l~~~~p~~l~~l~~  563 (677)
                      ++|+.|+++.|.++|.+|..++.++.
T Consensus       222 ~~l~~l~~~~n~~~g~ip~~~~~~~~  247 (272)
T 3rfs_A          222 PGIRYLSEWINKHSGVVRNSAGSVAP  247 (272)
T ss_dssp             TTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred             cHHHHHHHHHHhCCCcccCcccccCC
Confidence            57899999999999999998876653

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.89  E-value=3.2e-22  Score=198.62  Aligned_cols=202  Identities=21%  Similarity=0.179  Sum_probs=157.1

Q ss_pred             CCCCcCeEecCCCCCcccCCcccccCCCCceecccCccccccCCcCcCCCCCccEEECcCCcccccCCccCcCCCCCCEE
Q 048402          297 EPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESL  376 (677)
Q Consensus       297 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L  376 (677)
                      .++++++++++++.++ .+|..+.  ++++.|++++|.+++..+..|..+++|+.|++++|.+++..+  ...+++|++|
T Consensus         8 ~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L   82 (290)
T 1p9a_G            8 KVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTL   82 (290)
T ss_dssp             CSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEE
T ss_pred             ccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCEE
Confidence            3567777777777776 4444432  577888888888877777778888888888888888875543  2677888888


Q ss_pred             ecCCCcccccCChhhhhccCCceEEEcCCCcccccCCccccCCCCCCEEeCCCCcCCCCcCccccccccCccccccCccc
Q 048402          377 DVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSS  456 (677)
Q Consensus       377 ~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~  456 (677)
                      ++++|.+. .+|..+. .+++|++|++++|++++..+..|..+++|++|++++|++++..+..+..+             
T Consensus        83 ~Ls~N~l~-~l~~~~~-~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l-------------  147 (290)
T 1p9a_G           83 DLSHNQLQ-SLPLLGQ-TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPT-------------  147 (290)
T ss_dssp             ECCSSCCS-SCCCCTT-TCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTC-------------
T ss_pred             ECCCCcCC-cCchhhc-cCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccc-------------
Confidence            88888886 6666543 67888888888888887777788888899999999998875555444443             


Q ss_pred             CccCCCCCCCcccccceeeEeecCCchhhhhhhccccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeeccccccc
Q 048402          457 QQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGA  536 (677)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~  536 (677)
                                                       ++|+.|++++|++++..+..|..+++|+.|++++|+++ .+|..+..
T Consensus       148 ---------------------------------~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~  193 (290)
T 1p9a_G          148 ---------------------------------PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFG  193 (290)
T ss_dssp             ---------------------------------TTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTT
T ss_pred             ---------------------------------cCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcc
Confidence                                             44588999999998777777889999999999999999 78888888


Q ss_pred             CCCCcEEECCCCcccc
Q 048402          537 MRSLESIDFSVNQLSG  552 (677)
Q Consensus       537 l~~L~~L~Ls~N~l~~  552 (677)
                      +.+|+.|++++|.+..
T Consensus       194 ~~~L~~l~L~~Np~~C  209 (290)
T 1p9a_G          194 SHLLPFAFLHGNPWLC  209 (290)
T ss_dssp             TCCCSEEECCSCCBCC
T ss_pred             cccCCeEEeCCCCccC
Confidence            8899999999999863

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.88  E-value=1.9e-22  Score=196.30  Aligned_cols=212  Identities=17%  Similarity=0.197  Sum_probs=134.5

Q ss_pred             CCceecccCccccccCCcCcCCCCCccEEECcCCcccccCCccCcCCCCCCEEecCCCcccccCChhhhhccCCceEEEc
Q 048402          324 NLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLIL  403 (677)
Q Consensus       324 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L  403 (677)
                      ..++++++++.++ .+|..+.  +.++.|++++|++++..+..|.++++|++|++++|.+.                   
T Consensus        15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-------------------   72 (251)
T 3m19_A           15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-------------------   72 (251)
T ss_dssp             GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC-------------------
T ss_pred             CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCC-------------------
Confidence            4556666666666 3444443  45666666666666555555666666666666665554                   


Q ss_pred             CCCcccccCCccccCCCCCCEEeCCCCcCCCCcCccccccccCccccccCcccCccCCCCCCCcccccceeeEeecCCch
Q 048402          404 RSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAI  483 (677)
Q Consensus       404 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  483 (677)
                            +..+..+..+++|++|++++|++++..+..+..+                                        
T Consensus        73 ------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l----------------------------------------  106 (251)
T 3m19_A           73 ------TLSAGVFDDLTELGTLGLANNQLASLPLGVFDHL----------------------------------------  106 (251)
T ss_dssp             ------CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTC----------------------------------------
T ss_pred             ------ccCHhHhccCCcCCEEECCCCcccccChhHhccc----------------------------------------
Confidence                  3334444555555555555555543333333332                                        


Q ss_pred             hhhhhhccccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeecccccccCCCCcEEECCCCcccccCccccccCCC
Q 048402          484 EYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMS  563 (677)
Q Consensus       484 ~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~  563 (677)
                            ++|++|++++|++++..+..|..+++|++|+|++|++++..+..|+.+++|++|++++|++++..+..|..+++
T Consensus       107 ------~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~  180 (251)
T 3m19_A          107 ------TQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGK  180 (251)
T ss_dssp             ------TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred             ------CCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCC
Confidence                  23366666666666566666788899999999999999766668999999999999999999777778999999


Q ss_pred             CCEEEcccCcccccCCCCCCCC------CcCcccccCCCCCCCCCCCCCCCC
Q 048402          564 LNHLNLSNNKLTGKIPSSTQLQ------SFDASSFTGNDLCGAPLPKNCAEN  609 (677)
Q Consensus       564 L~~L~ls~N~l~~~~p~~~~~~------~l~~~~~~~n~l~~~~~~~~c~~~  609 (677)
                      |++|++++|++.|.......+.      .....+..++.+++.|....|...
T Consensus       181 L~~L~l~~N~~~c~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~  232 (251)
T 3m19_A          181 LQTITLFGNQFDCSRCEILYLSQWIRENSNKVKDGTGQNLHESPDGVTCSDG  232 (251)
T ss_dssp             CCEEECCSCCBCTTSTTHHHHHHHHHHSGGGBCC-------CCGGGCBBTTS
T ss_pred             CCEEEeeCCceeCCccccHHHHHHHHhcccceeeccCcccccCCCcCccCCC
Confidence            9999999999988743321110      111223456677877877788655

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.88  E-value=1.1e-24  Score=226.94  Aligned_cols=236  Identities=16%  Similarity=0.228  Sum_probs=153.6

Q ss_pred             CCCcCeEecCCCCCcccCC----cccccCCCCceecccCcc---ccccCCcCc-------CCCCCccEEECcCCcccc--
Q 048402          298 PKSLIGLKLKDNSLQGEIP----DCWMSYQNLEILELSNNK---FTGKLPNSL-------GSLTSLIWLLLGKNRLSG--  361 (677)
Q Consensus       298 ~~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~L~~n~---l~~~~~~~~-------~~l~~L~~L~l~~n~~~~--  361 (677)
                      +++|++|++++|.++...+    ..+..+++|++|++++|.   +.+.+|..+       ..+++|++|++++|.++.  
T Consensus        31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~  110 (386)
T 2ca6_A           31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA  110 (386)
T ss_dssp             CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred             CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence            4555555555555554322    224455556666665542   223333332       566677777777777665  


Q ss_pred             --cCCccCcCCCCCCEEecCCCcccccCChhhhh---cc---------CCceEEEcCCCccc-ccCC---ccccCCCCCC
Q 048402          362 --TIPVSLKNCTALESLDVGENEFVGNIPTWTGE---RF---------SRMVVLILRSNNFH-GPLP---TRLCDLAFLQ  423 (677)
Q Consensus       362 --~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~---~l---------~~L~~L~L~~n~l~-~~~~---~~~~~l~~L~  423 (677)
                        .++..+..+++|++|++++|.+.+..+..+..   .+         ++|++|++++|+++ +.++   ..+..+++|+
T Consensus       111 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~  190 (386)
T 2ca6_A          111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH  190 (386)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred             HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcC
Confidence              34556666777777777777765333322221   12         67777888777776 3333   3556677888


Q ss_pred             EEeCCCCcCCC-----CcCccccccccCccccccCcccCccCCCCCCCcccccceeeEeecCCchhhhhhhccccEEEcc
Q 048402          424 ILDLADNNLFG-----TIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVS  498 (677)
Q Consensus       424 ~L~Ls~n~l~~-----~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls  498 (677)
                      +|++++|++..     ..|..                                              +..+++|+.|+|+
T Consensus       191 ~L~L~~n~l~~~g~~~l~~~~----------------------------------------------l~~~~~L~~L~Ls  224 (386)
T 2ca6_A          191 TVKMVQNGIRPEGIEHLLLEG----------------------------------------------LAYCQELKVLDLQ  224 (386)
T ss_dssp             EEECCSSCCCHHHHHHHHHTT----------------------------------------------GGGCTTCCEEECC
T ss_pred             EEECcCCCCCHhHHHHHHHHH----------------------------------------------hhcCCCccEEECc
Confidence            88888887641     11112                                              2234556888888


Q ss_pred             cCccc----ccCCcccCCCCCCcEEeccCCcceee----cccccc--cCCCCcEEECCCCcccc----cCcccc-ccCCC
Q 048402          499 RNNLT----KSIPLEMTNLKATQSLNFSHNSFTGR----IPESIG--AMRSLESIDFSVNQLSG----EIPQSM-SNLMS  563 (677)
Q Consensus       499 ~n~l~----~~~~~~l~~l~~L~~L~Ls~n~l~~~----~p~~~~--~l~~L~~L~Ls~N~l~~----~~p~~l-~~l~~  563 (677)
                      +|.++    ..+|..+..+++|++|+|++|.+++.    +|..+.  .+++|++|+|++|.+++    .+|..+ .++++
T Consensus       225 ~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~  304 (386)
T 2ca6_A          225 DNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPD  304 (386)
T ss_dssp             SSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTT
T ss_pred             CCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCC
Confidence            88885    56777888888999999999998765    456663  38899999999999987    477777 56899


Q ss_pred             CCEEEcccCcccccCC
Q 048402          564 LNHLNLSNNKLTGKIP  579 (677)
Q Consensus       564 L~~L~ls~N~l~~~~p  579 (677)
                      |++|++++|++.+..|
T Consensus       305 L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          305 LLFLELNGNRFSEEDD  320 (386)
T ss_dssp             CCEEECTTSBSCTTSH
T ss_pred             ceEEEccCCcCCcchh
Confidence            9999999999887654

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.88  E-value=6.1e-24  Score=218.89  Aligned_cols=130  Identities=24%  Similarity=0.250  Sum_probs=64.6

Q ss_pred             EEcccCCCCCCCCCC---CCCccEEEccCCcccccCChhHhhccCCCC-CcCeEecCCCCCcccCCcccccC-----CCC
Q 048402          255 LSVHSNNMSGPLPLI---SSNLVYLDLSNNSFSGSVSHYLCYRINEPK-SLIGLKLKDNSLQGEIPDCWMSY-----QNL  325 (677)
Q Consensus       255 L~l~~n~~~~~~~~~---~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~l-----~~L  325 (677)
                      ++++.|.+++.+|..   .++|++|++++|.+++..+..+...+..++ +|++|++++|.+++..+..+..+     ++|
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L   82 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV   82 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred             cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence            345555555544432   233666666666655554444444444455 56666666665555444444443     555


Q ss_pred             ceecccCccccccCCcCc----CCC-CCccEEECcCCcccccCCccC----cC-CCCCCEEecCCCccc
Q 048402          326 EILELSNNKFTGKLPNSL----GSL-TSLIWLLLGKNRLSGTIPVSL----KN-CTALESLDVGENEFV  384 (677)
Q Consensus       326 ~~L~L~~n~l~~~~~~~~----~~l-~~L~~L~l~~n~~~~~~~~~~----~~-l~~L~~L~l~~n~l~  384 (677)
                      ++|++++|.+++..+..+    ..+ ++|+.|++++|++++..+..+    .. .++|++|++++|.+.
T Consensus        83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~  151 (362)
T 3goz_A           83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLG  151 (362)
T ss_dssp             CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGG
T ss_pred             cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCC
Confidence            555555555554433322    222 455555555555554333222    12 235555555555554

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.88  E-value=7.6e-23  Score=205.89  Aligned_cols=234  Identities=19%  Similarity=0.173  Sum_probs=143.1

Q ss_pred             CccEEEccCCcccccCChhHhhccCCCCCcCeEecCCCCCcccCCccc--ccCCCCceecccCccccccCC----cCcCC
Q 048402          272 NLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCW--MSYQNLEILELSNNKFTGKLP----NSLGS  345 (677)
Q Consensus       272 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~----~~~~~  345 (677)
                      .++.+.+.++.++......+... ...++|++|++++|.+.+..|..+  ..+++|++|++++|.+.+..+    ..+..
T Consensus        65 ~l~~l~l~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~  143 (310)
T 4glp_A           65 RVRRLTVGAAQVPAQLLVGALRV-LAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL  143 (310)
T ss_dssp             CCCEEEECSCCCBHHHHHHHHHH-HHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred             ceeEEEEeCCcCCHHHHHHHHHh-cccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence            34556666655542211111111 113557888888888777777776  777888888888888775444    23446


Q ss_pred             CCCccEEECcCCcccccCCccCcCCCCCCEEecCCCcccccCChhhhhccCCceEEEcCCCcccccCCccccCCCCCCEE
Q 048402          346 LTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQIL  425 (677)
Q Consensus       346 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  425 (677)
                      +++|++|++++|++++..+..|..+++|++|++++|++.+....                     ..+..+..+++|++|
T Consensus       144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~---------------------~~~~~~~~l~~L~~L  202 (310)
T 4glp_A          144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGL---------------------MAALCPHKFPAIQNL  202 (310)
T ss_dssp             CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHH---------------------HTTSCTTSSCCCCSC
T ss_pred             ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhh---------------------hHHHhhhcCCCCCEE
Confidence            77777777777777766666777777777777777765431000                     001122345556666


Q ss_pred             eCCCCcCCCCcCccccccccCccccccCcccCccCCCCCCCcccccceeeEeecCCchhhhhhhccccEEEcccCccccc
Q 048402          426 DLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKS  505 (677)
Q Consensus       426 ~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~  505 (677)
                      ++++|+++ .+|...                                          ...+..+++|++||+++|++++.
T Consensus       203 ~Ls~N~l~-~l~~~~------------------------------------------~~l~~~l~~L~~L~Ls~N~l~~~  239 (310)
T 4glp_A          203 ALRNTGME-TPTGVC------------------------------------------AALAAAGVQPHSLDLSHNSLRAT  239 (310)
T ss_dssp             BCCSSCCC-CHHHHH------------------------------------------HHHHHHTCCCSSEECTTSCCCCC
T ss_pred             ECCCCCCC-chHHHH------------------------------------------HHHHhcCCCCCEEECCCCCCCcc
Confidence            66666553 111100                                          00112234456666666666666


Q ss_pred             CCcccCCC---CCCcEEeccCCcceeecccccccCCCCcEEECCCCcccccCccccccCCCCCEEEcccCccc
Q 048402          506 IPLEMTNL---KATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLSNNKLT  575 (677)
Q Consensus       506 ~~~~l~~l---~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~  575 (677)
                      .|..+..+   ++|++|++++|+++ .+|..+.  ++|++|++++|++++. |. +..+++|+.|++++|+++
T Consensus       240 ~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~  307 (310)
T 4glp_A          240 VNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFL  307 (310)
T ss_dssp             CCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTS
T ss_pred             chhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCC
Confidence            56555555   57888888888887 5666654  6888888888888743 43 667788888888888875

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.88  E-value=2.7e-22  Score=193.75  Aligned_cols=56  Identities=18%  Similarity=0.282  Sum_probs=26.7

Q ss_pred             CCCcEEeccCCc-ceeecccccccC-CCCcEEECCCCcccccCccccccCCCCCEEEcccC
Q 048402          514 KATQSLNFSHNS-FTGRIPESIGAM-RSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLSNN  572 (677)
Q Consensus       514 ~~L~~L~Ls~n~-l~~~~p~~~~~l-~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N  572 (677)
                      ++|++|++++|+ +++..+..|.++ ++|+.|++++|++++ +|..  .+++|+.|+++++
T Consensus       179 ~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~  236 (239)
T 2xwt_C          179 TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNT  236 (239)
T ss_dssp             CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC
T ss_pred             CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccCc
Confidence            445555555553 543334445555 555555555555542 2222  3444555555443

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.87  E-value=6.4e-23  Score=209.46  Aligned_cols=252  Identities=18%  Similarity=0.191  Sum_probs=183.1

Q ss_pred             ccEEEccCCcccccCChhHhhccCCCCCcCeEecCCCCCcccCCcccccCCCCceecccCcccccc-CCcCcCCCCCccE
Q 048402          273 LVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGK-LPNSLGSLTSLIW  351 (677)
Q Consensus       273 L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~  351 (677)
                      ++.++++++.+..   ..+....  .+.++.|++++|.+.+..+. +..+++|++|++++|.+++. .+..+..+++|++
T Consensus        49 ~~~l~l~~~~~~~---~~~~~~~--~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~  122 (336)
T 2ast_B           49 WQTLDLTGKNLHP---DVTGRLL--SQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN  122 (336)
T ss_dssp             SSEEECTTCBCCH---HHHHHHH--HTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred             heeeccccccCCH---HHHHhhh--hccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence            5667777776652   2222200  16788888888888866555 45788999999999888755 6777888899999


Q ss_pred             EECcCCcccccCCccCcCCCCCCEEecCCC-ccccc-CChhhhhccCCceEEEcCCC-ccccc-CCccccCCC-CCCEEe
Q 048402          352 LLLGKNRLSGTIPVSLKNCTALESLDVGEN-EFVGN-IPTWTGERFSRMVVLILRSN-NFHGP-LPTRLCDLA-FLQILD  426 (677)
Q Consensus       352 L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~-~L~~L~  426 (677)
                      |++++|.+++..+..+..+++|++|++++| .+++. ++..+ ..+++|++|++++| .+++. ++..+..++ +|++|+
T Consensus       123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~  201 (336)
T 2ast_B          123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLL-SSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLN  201 (336)
T ss_dssp             EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHH-HHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEE
T ss_pred             EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHH-hcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEE
Confidence            999999888777778888899999999998 56643 44333 36889999999998 88753 566677888 999999


Q ss_pred             CCCCc--CC-CCcCccccccccCccccccCcccCccCCCCCCCcccccceeeEeecCCchhhhhhhccccEEEcccCc-c
Q 048402          427 LADNN--LF-GTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNN-L  502 (677)
Q Consensus       427 Ls~n~--l~-~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~-l  502 (677)
                      +++|.  ++ +.+|.                                              ....+++|++|++++|. +
T Consensus       202 l~~~~~~~~~~~l~~----------------------------------------------~~~~~~~L~~L~l~~~~~l  235 (336)
T 2ast_B          202 LSGYRKNLQKSDLST----------------------------------------------LVRRCPNLVHLDLSDSVML  235 (336)
T ss_dssp             CCSCGGGSCHHHHHH----------------------------------------------HHHHCTTCSEEECTTCTTC
T ss_pred             eCCCcccCCHHHHHH----------------------------------------------HHhhCCCCCEEeCCCCCcC
Confidence            99984  33 12222                                              23446667999999998 7


Q ss_pred             cccCCcccCCCCCCcEEeccCCc-ceeecccccccCCCCcEEECCCCcccccCccccccC-CCCCEEEcccCcccccCCC
Q 048402          503 TKSIPLEMTNLKATQSLNFSHNS-FTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNL-MSLNHLNLSNNKLTGKIPS  580 (677)
Q Consensus       503 ~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~ls~N~l~~~~p~  580 (677)
                      ++..+..+..+++|++|++++|. +.......+.++++|++|++++| ++.   +.+..+ ..++.|++++|++++..|.
T Consensus       236 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~---~~~~~l~~~l~~L~l~~n~l~~~~~~  311 (336)
T 2ast_B          236 KNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD---GTLQLLKEALPHLQINCSHFTTIARP  311 (336)
T ss_dssp             CGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT---TCHHHHHHHSTTSEESCCCSCCTTCS
T ss_pred             CHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCH---HHHHHHHhhCcceEEecccCccccCC
Confidence            76777788889999999999995 32222235788999999999998 432   234444 3466777899999888776


Q ss_pred             C
Q 048402          581 S  581 (677)
Q Consensus       581 ~  581 (677)
                      .
T Consensus       312 ~  312 (336)
T 2ast_B          312 T  312 (336)
T ss_dssp             S
T ss_pred             c
Confidence            4

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.86  E-value=3.8e-22  Score=200.83  Aligned_cols=203  Identities=21%  Similarity=0.267  Sum_probs=156.8

Q ss_pred             CCCccEEECcCCcccccCCccC--cCCCCCCEEecCCCcccccCCh---hhhhccCCceEEEcCCCcccccCCccccCCC
Q 048402          346 LTSLIWLLLGKNRLSGTIPVSL--KNCTALESLDVGENEFVGNIPT---WTGERFSRMVVLILRSNNFHGPLPTRLCDLA  420 (677)
Q Consensus       346 l~~L~~L~l~~n~~~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~---~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  420 (677)
                      +++|++|++++|++++..|..+  ..+++|++|++++|.+.+..+.   .....+++|++|++++|.+.+..+..+..++
T Consensus        90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~  169 (310)
T 4glp_A           90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP  169 (310)
T ss_dssp             HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred             cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence            3457777777777776666666  6777777777777777654441   1112588999999999999888888999999


Q ss_pred             CCCEEeCCCCcCCCC--cC--ccccccccCccccccCcccCccCCCCCCCcccccceeeEeecCCchhhhhhhccccEEE
Q 048402          421 FLQILDLADNNLFGT--IP--KCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETD  496 (677)
Q Consensus       421 ~L~~L~Ls~n~l~~~--~p--~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~  496 (677)
                      +|++|++++|++.+.  ++  ..+..                                              +++|++|+
T Consensus       170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~----------------------------------------------l~~L~~L~  203 (310)
T 4glp_A          170 ALTSLDLSDNPGLGERGLMAALCPHK----------------------------------------------FPAIQNLA  203 (310)
T ss_dssp             TCCEEECCSCTTCHHHHHHTTSCTTS----------------------------------------------SCCCCSCB
T ss_pred             CCCEEECCCCCCccchhhhHHHhhhc----------------------------------------------CCCCCEEE
Confidence            999999999997642  21  11122                                              45569999


Q ss_pred             cccCcccccCCc----ccCCCCCCcEEeccCCcceeecccccccC---CCCcEEECCCCcccccCccccccCCCCCEEEc
Q 048402          497 VSRNNLTKSIPL----EMTNLKATQSLNFSHNSFTGRIPESIGAM---RSLESIDFSVNQLSGEIPQSMSNLMSLNHLNL  569 (677)
Q Consensus       497 Ls~n~l~~~~~~----~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l---~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l  569 (677)
                      +++|+++. ++.    .+..+++|++|+|++|++++..|+.+..+   ++|++|++++|+++ .+|..+.  ++|++||+
T Consensus       204 Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~L  279 (310)
T 4glp_A          204 LRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDL  279 (310)
T ss_dssp             CCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEEC
T ss_pred             CCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEEC
Confidence            99999973 232    35788999999999999998878888777   69999999999999 7787775  89999999


Q ss_pred             ccCcccccCCCCCCCCCcCcccccCCCCCC
Q 048402          570 SNNKLTGKIPSSTQLQSFDASSFTGNDLCG  599 (677)
Q Consensus       570 s~N~l~~~~p~~~~~~~l~~~~~~~n~l~~  599 (677)
                      ++|++++. |....+..++.+++++|.+..
T Consensus       280 s~N~l~~~-~~~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          280 SSNRLNRA-PQPDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             CSCCCCSC-CCTTSCCCCSCEECSSTTTSC
T ss_pred             CCCcCCCC-chhhhCCCccEEECcCCCCCC
Confidence            99999974 445577888888888886653

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.86  E-value=2e-21  Score=187.63  Aligned_cols=197  Identities=17%  Similarity=0.121  Sum_probs=169.3

Q ss_pred             CCCCEEecCCCCCCCccCchhhcCCCCCCEEEccCCc-CCcccchhhhhccccCcCCccEEEccc-CcCccccccccCCC
Q 048402           27 TSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVH-LSQEISEILNIFSGCVSIELESLDLRS-SSISGHLTDQLGQF  104 (677)
Q Consensus        27 ~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~~~~~~L~~L~L~~-n~l~~~~~~~~~~l  104 (677)
                      ++|++|+++ ++.+++..+.+|.++++|++|++++|. +++..+..|..++     +|++|++++ |.+++..+..|.++
T Consensus        31 ~~l~~L~l~-~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~-----~L~~L~l~~~n~l~~i~~~~f~~l  104 (239)
T 2xwt_C           31 PSTQTLKLI-ETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLS-----KVTHIEIRNTRNLTYIDPDALKEL  104 (239)
T ss_dssp             TTCCEEEEE-SCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCT-----TCCEEEEEEETTCCEECTTSEECC
T ss_pred             CcccEEEEe-CCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCc-----CCcEEECCCCCCeeEcCHHHhCCC
Confidence            489999999 777887777789999999999999997 8877777888888     899999998 99998777889999


Q ss_pred             CCCCEEECcCCccccCCCcCCCCCCCCC---EEEcccc-ccccccChhhhhCCCCCC-EEEeeccccceecCCCCCCCcC
Q 048402          105 KNLDNLDLANNSIVGPIPQSLGHLSNLR---VLQIYNN-KLNGTLSEIHFSNLTKLS-WFRVGGNKLTLEVRHDWIPPFQ  179 (677)
Q Consensus       105 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~---~L~L~~n-~i~~~l~~~~~~~l~~L~-~L~l~~n~l~~~~~~~~~~~~~  179 (677)
                      ++|++|++++|.+++ +|. +..+++|+   +|++++| .++ .++...|.++++|+ .|++++|.++......|.. .+
T Consensus       105 ~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~-~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~  180 (239)
T 2xwt_C          105 PLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMT-SIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TK  180 (239)
T ss_dssp             TTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCC-EECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CE
T ss_pred             CCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchh-hcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CC
Confidence            999999999999985 665 88888888   9999999 887 67766799999999 9999999998766666666 79


Q ss_pred             ccEEEeeccc-CCCCCChhccCC-CCCCEEEccCCCCCCccchHHHhccCCccEEECCCc
Q 048402          180 LVALGFHNCY-VGSRFPQWLHSQ-KHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLN  237 (677)
Q Consensus       180 L~~L~l~~n~-~~~~~~~~~~~l-~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n  237 (677)
                      |+.|++++|. +....+..|..+ ++|++|++++|++++..+.    .+++|+.|+++++
T Consensus       181 L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~----~~~~L~~L~l~~~  236 (239)
T 2xwt_C          181 LDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK----GLEHLKELIARNT  236 (239)
T ss_dssp             EEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT----TCTTCSEEECTTC
T ss_pred             CCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh----HhccCceeeccCc
Confidence            9999999995 887778889999 9999999999999887553    4678999998875

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.86  E-value=4e-21  Score=192.74  Aligned_cols=194  Identities=22%  Similarity=0.318  Sum_probs=133.5

Q ss_pred             ccCCCCceecccCccccccCCcCcCCCCCccEEECcCCcccccCCccCcCCCCCCEEecCCCcccccCChhhhhccCCce
Q 048402          320 MSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMV  399 (677)
Q Consensus       320 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~  399 (677)
                      ..+++|++|++++|.++. ++ .+..+++|+.|++++|.+++..+  +..+++|++|++++|.+. .++. + ..+++|+
T Consensus        38 ~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~-~~~~-~-~~l~~L~  110 (308)
T 1h6u_A           38 ADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK-NVSA-I-AGLQSIK  110 (308)
T ss_dssp             HHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS-CCGG-G-TTCTTCC
T ss_pred             HHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCC-Cchh-h-cCCCCCC
Confidence            455666666666666653 33 45666666666666666664333  666667777777776665 3332 2 2567777


Q ss_pred             EEEcCCCcccccCCccccCCCCCCEEeCCCCcCCCCcCccccccccCccccccCcccCccCCCCCCCcccccceeeEeec
Q 048402          400 VLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSE  479 (677)
Q Consensus       400 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  479 (677)
                      +|++++|.+++. + .+..+++|++|++++|++.+..+  +.                                      
T Consensus       111 ~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~--------------------------------------  148 (308)
T 1h6u_A          111 TLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LA--------------------------------------  148 (308)
T ss_dssp             EEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GG--------------------------------------
T ss_pred             EEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--cc--------------------------------------
Confidence            777777777643 2 26777788888888887753322  22                                      


Q ss_pred             CCchhhhhhhccccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeecccccccCCCCcEEECCCCcccccCccccc
Q 048402          480 GEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMS  559 (677)
Q Consensus       480 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~  559 (677)
                              .+++|+.|++++|.+++..+  +..+++|++|++++|++++..+  +..+++|++|++++|++++..  .+.
T Consensus       149 --------~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~  214 (308)
T 1h6u_A          149 --------GLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLA  214 (308)
T ss_dssp             --------GCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGT
T ss_pred             --------CCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--ccc
Confidence                    24455788888888875443  7888899999999999885433  788899999999999998554  378


Q ss_pred             cCCCCCEEEcccCcccc
Q 048402          560 NLMSLNHLNLSNNKLTG  576 (677)
Q Consensus       560 ~l~~L~~L~ls~N~l~~  576 (677)
                      .+++|+.|++++|++++
T Consensus       215 ~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          215 NTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             TCTTCCEEEEEEEEEEC
T ss_pred             CCCCCCEEEccCCeeec
Confidence            88999999999999875

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.86  E-value=1.5e-22  Score=210.64  Aligned_cols=242  Identities=21%  Similarity=0.216  Sum_probs=168.1

Q ss_pred             CccccCCCCCCEEecCCCCCCCcc----CchhhcCCCCCCEEEccCCc---CCcccchhh-------hhccccCcCCccE
Q 048402           20 SEALGNLTSISRLDLSLNTGPEGR----IPRSMASLCNLKSINLRGVH---LSQEISEIL-------NIFSGCVSIELES   85 (677)
Q Consensus        20 ~~~~~~l~~L~~L~Ls~~~~~~~~----~~~~l~~l~~L~~L~l~~n~---l~~~~~~~~-------~~l~~~~~~~L~~   85 (677)
                      ...+..+++|++|+|+ ++.+...    ++..+..+++|++|++++|.   +++.+|..+       ..++     +|++
T Consensus        25 ~~~l~~~~~L~~L~L~-~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~-----~L~~   98 (386)
T 2ca6_A           25 FAVLLEDDSVKEIVLS-GNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCP-----KLHT   98 (386)
T ss_dssp             SHHHHHCSCCCEEECT-TSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCT-----TCCE
T ss_pred             HHHHhcCCCccEEECC-CCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCC-----cccE
Confidence            4556677888888888 6666544    33346678888888888753   444455544       3455     7888


Q ss_pred             EEcccCcCcc----ccccccCCCCCCCEEECcCCccccCCCcCC----CCC---------CCCCEEEccccccc-cccCh
Q 048402           86 LDLRSSSISG----HLTDQLGQFKNLDNLDLANNSIVGPIPQSL----GHL---------SNLRVLQIYNNKLN-GTLSE  147 (677)
Q Consensus        86 L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~----~~l---------~~L~~L~L~~n~i~-~~l~~  147 (677)
                      |++++|.++.    .++..+..+++|++|++++|.++...+..+    ..+         ++|++|++++|.++ +.++.
T Consensus        99 L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~  178 (386)
T 2ca6_A           99 VRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKE  178 (386)
T ss_dssp             EECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHH
T ss_pred             EECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHH
Confidence            8888888876    366677788888888888888764333333    333         78888888888876 33332


Q ss_pred             --hhhhCCCCCCEEEeeccccce-----ecCCCCCCCcCccEEEeecccCC----CCCChhccCCCCCCEEEccCCCCCC
Q 048402          148 --IHFSNLTKLSWFRVGGNKLTL-----EVRHDWIPPFQLVALGFHNCYVG----SRFPQWLHSQKHLQYLNLLNSGMSD  216 (677)
Q Consensus       148 --~~~~~l~~L~~L~l~~n~l~~-----~~~~~~~~~~~L~~L~l~~n~~~----~~~~~~~~~l~~L~~L~l~~n~i~~  216 (677)
                        ..+..+++|+.|++++|.+..     ..+..+..+++|+.|++++|.++    ..+|..+..+++|++|++++|.+++
T Consensus       179 l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~  258 (386)
T 2ca6_A          179 WAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSA  258 (386)
T ss_dssp             HHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCH
T ss_pred             HHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCch
Confidence              256678888888888887763     23346677788888888888875    5567778888888889998888877


Q ss_pred             ccchHHHh-----ccCCccEEECCCccCcc-----ccCCc-cccccccEEEcccCCCCCCCC
Q 048402          217 LFPIRFLK-----SAFQLKFLDLGLNQFHG-----QITDL-TKVTQLLFLSVHSNNMSGPLP  267 (677)
Q Consensus       217 ~~~~~~~~-----~~~~L~~L~Ls~n~l~~-----~~~~~-~~~~~L~~L~l~~n~~~~~~~  267 (677)
                      .....+..     .+++|++|++++|.+++     .+..+ ..+++|+.|++++|.+++..+
T Consensus       259 ~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          259 RGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             HHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred             hhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence            53332222     26788889998888887     33333 235888899999888886653

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.86  E-value=1.8e-22  Score=207.89  Aligned_cols=265  Identities=17%  Similarity=0.172  Sum_probs=167.2

Q ss_pred             EEEccCCCCceecCCccccCCCCCCEEecCCCCCCCccCc----hhhcCCC-CCCEEEccCCcCCcccchhhhhc-----
Q 048402            6 YLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIP----RSMASLC-NLKSINLRGVHLSQEISEILNIF-----   75 (677)
Q Consensus         6 ~L~Ls~n~~~~~i~~~~~~~l~~L~~L~Ls~~~~~~~~~~----~~l~~l~-~L~~L~l~~n~l~~~~~~~~~~l-----   75 (677)
                      +++++.|.++|.+ +..+...++|++|+|+ ++.+.+..+    .++..++ +|++|++++|.+++..+..+..+     
T Consensus         2 ~~~ls~n~~~~~~-~~~~~~~~~L~~L~Ls-~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~   79 (362)
T 3goz_A            2 NYKLTLHPGSNPV-EEFTSIPHGVTSLDLS-LNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIP   79 (362)
T ss_dssp             EEECCCCTTCCHH-HHHHTSCTTCCEEECT-TSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSC
T ss_pred             ccccccccchHHH-HHHHhCCCCceEEEcc-CCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccC
Confidence            5789999999777 6666667779999999 777776666    7788898 89999999999998878777765     


Q ss_pred             cccCcCCccEEEcccCcCcccccccc----CCC-CCCCEEECcCCccccCCCcCC----CC-CCCCCEEEccccccccc-
Q 048402           76 SGCVSIELESLDLRSSSISGHLTDQL----GQF-KNLDNLDLANNSIVGPIPQSL----GH-LSNLRVLQIYNNKLNGT-  144 (677)
Q Consensus        76 ~~~~~~~L~~L~L~~n~l~~~~~~~~----~~l-~~L~~L~L~~n~l~~~~~~~~----~~-l~~L~~L~L~~n~i~~~-  144 (677)
                      +     +|++|++++|.+++..+..+    ..+ ++|++|++++|.++...+..+    .. .++|++|++++|.+++. 
T Consensus        80 ~-----~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~  154 (362)
T 3goz_A           80 A-----NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKS  154 (362)
T ss_dssp             T-----TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSC
T ss_pred             C-----CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHH
Confidence            5     89999999999987666544    444 899999999999986655443    34 36899999999988732 


Q ss_pred             ---cChhhhhCCC-CCCEEEeeccccceecCCCC----CCC-cCccEEEeecccCCCC----CChhccC-CCCCCEEEcc
Q 048402          145 ---LSEIHFSNLT-KLSWFRVGGNKLTLEVRHDW----IPP-FQLVALGFHNCYVGSR----FPQWLHS-QKHLQYLNLL  210 (677)
Q Consensus       145 ---l~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~----~~~-~~L~~L~l~~n~~~~~----~~~~~~~-l~~L~~L~l~  210 (677)
                         ++. .+...+ +|++|++++|.++......+    ... .+|+.|++++|.++..    ++..+.. .++|++|+++
T Consensus       155 ~~~l~~-~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls  233 (362)
T 3goz_A          155 SDELIQ-ILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLC  233 (362)
T ss_dssp             HHHHHH-HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECC
T ss_pred             HHHHHH-HHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECc
Confidence               222 345555 88888888888775443322    222 3555555555555442    2222332 2355555555


Q ss_pred             CCCCCCccchHH---HhccCCccEEECCCccCccccCCccccccccEEEcccCCCCCCCCCCCCCccEEEccCCcccccC
Q 048402          211 NSGMSDLFPIRF---LKSAFQLKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNNMSGPLPLISSNLVYLDLSNNSFSGSV  287 (677)
Q Consensus       211 ~n~i~~~~~~~~---~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~  287 (677)
                      +|.+++..+..+   +..+++|++|++++|.+....+.....            +. .....+++|+.|++++|.+.+..
T Consensus       234 ~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~------------l~-~~~~~l~~L~~LdL~~N~l~~~~  300 (362)
T 3goz_A          234 LNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKA------------LG-AAFPNIQKIILVDKNGKEIHPSH  300 (362)
T ss_dssp             SSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHH------------HH-TTSTTCCEEEEECTTSCBCCGGG
T ss_pred             CCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHH------------HH-HHhccCCceEEEecCCCcCCCcc
Confidence            555554433222   122344555555554422211100000            00 00112456777778888776654


Q ss_pred             ChhH
Q 048402          288 SHYL  291 (677)
Q Consensus       288 ~~~~  291 (677)
                      +..+
T Consensus       301 ~~~~  304 (362)
T 3goz_A          301 SIPI  304 (362)
T ss_dssp             CHHH
T ss_pred             hHHH
Confidence            4433

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.85  E-value=1.2e-22  Score=207.33  Aligned_cols=234  Identities=16%  Similarity=0.229  Sum_probs=150.6

Q ss_pred             CCccEEEccCCcccccCChhHhhccCCCCCcCeEecCCCCCccc-CCcccccCCCCceecccCccccccCCcCcCCCCCc
Q 048402          271 SNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGE-IPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSL  349 (677)
Q Consensus       271 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  349 (677)
                      ++++.|++++|.+.+..+.     +..+++|++|++++|.+.+. ++..+..+++|++|++++|.+++..+..+..+++|
T Consensus        70 ~~l~~L~l~~n~l~~~~~~-----~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L  144 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAE-----HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNL  144 (336)
T ss_dssp             TTCSEEECTTCEECSCCCS-----CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTC
T ss_pred             ccceEEEcCCccccccchh-----hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCC
Confidence            3455555555555544433     22356677777777766544 55566677777777777777766666667777777


Q ss_pred             cEEECcCC-ccccc-CCccCcCCCCCCEEecCCC-ccccc-CChhhhhccC-CceEEEcCCC--ccc-ccCCccccCCCC
Q 048402          350 IWLLLGKN-RLSGT-IPVSLKNCTALESLDVGEN-EFVGN-IPTWTGERFS-RMVVLILRSN--NFH-GPLPTRLCDLAF  421 (677)
Q Consensus       350 ~~L~l~~n-~~~~~-~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~~l~-~L~~L~L~~n--~l~-~~~~~~~~~l~~  421 (677)
                      ++|++++| .+++. .+..+..+++|++|++++| .+++. ++..+. .++ +|++|++++|  .++ +.++..+..+++
T Consensus       145 ~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~-~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~  223 (336)
T 2ast_B          145 VRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVA-HVSETITQLNLSGYRKNLQKSDLSTLVRRCPN  223 (336)
T ss_dssp             SEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHH-HSCTTCCEEECCSCGGGSCHHHHHHHHHHCTT
T ss_pred             CEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHH-hcccCCCEEEeCCCcccCCHHHHHHHHhhCCC
Confidence            77777777 55542 4455667777777777777 66543 333333 577 7888888777  444 345566667788


Q ss_pred             CCEEeCCCCc-CCCCcCccccccccCccccccCcccCccCCCCCCCcccccceeeEeecCCchhhhhhhccccEEEcccC
Q 048402          422 LQILDLADNN-LFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRN  500 (677)
Q Consensus       422 L~~L~Ls~n~-l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n  500 (677)
                      |+.|++++|. +++..+..+..                                              +++|++|++++|
T Consensus       224 L~~L~l~~~~~l~~~~~~~l~~----------------------------------------------l~~L~~L~l~~~  257 (336)
T 2ast_B          224 LVHLDLSDSVMLKNDCFQEFFQ----------------------------------------------LNYLQHLSLSRC  257 (336)
T ss_dssp             CSEEECTTCTTCCGGGGGGGGG----------------------------------------------CTTCCEEECTTC
T ss_pred             CCEEeCCCCCcCCHHHHHHHhC----------------------------------------------CCCCCEeeCCCC
Confidence            8888888887 55444444433                                              344578888887


Q ss_pred             c-ccccCCcccCCCCCCcEEeccCCcceeecccccccC-CCCcEEECCCCcccccCcccccc
Q 048402          501 N-LTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAM-RSLESIDFSVNQLSGEIPQSMSN  560 (677)
Q Consensus       501 ~-l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l-~~L~~L~Ls~N~l~~~~p~~l~~  560 (677)
                      . +.......+.++++|++|++++| +..   +.+..+ .+++.|++++|++++..|..++.
T Consensus       258 ~~~~~~~~~~l~~~~~L~~L~l~~~-i~~---~~~~~l~~~l~~L~l~~n~l~~~~~~~~~~  315 (336)
T 2ast_B          258 YDIIPETLLELGEIPTLKTLQVFGI-VPD---GTLQLLKEALPHLQINCSHFTTIARPTIGN  315 (336)
T ss_dssp             TTCCGGGGGGGGGCTTCCEEECTTS-SCT---TCHHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred             CCCCHHHHHHHhcCCCCCEEeccCc-cCH---HHHHHHHhhCcceEEecccCccccCCcccc
Confidence            4 32222235778899999999998 332   234444 34777778999999888877664

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.85  E-value=2.9e-20  Score=180.78  Aligned_cols=159  Identities=20%  Similarity=0.215  Sum_probs=85.4

Q ss_pred             CCCEEEccCCcCCcccchhhhhccccCcCCccEEEcccCcCccccccccCCCCCCCEEECcCCccccCCCcCCCCCCCCC
Q 048402           53 NLKSINLRGVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLR  132 (677)
Q Consensus        53 ~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  132 (677)
                      ++++|++++|.+++..+..+..++     +|++|++++|.+++..+..|.++++|++|++++|.+++..+..|..+++|+
T Consensus        36 ~l~~L~L~~n~l~~~~~~~~~~l~-----~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  110 (251)
T 3m19_A           36 DTEKLDLQSTGLATLSDATFRGLT-----KLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLD  110 (251)
T ss_dssp             TCCEEECTTSCCCCCCTTTTTTCT-----TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred             CCCEEEccCCCcCccCHhHhcCcc-----cCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCC
Confidence            444444444444444444444444     455555555555444444445555555555555555444444444555555


Q ss_pred             EEEccccccccccChhhhhCCCCCCEEEeeccccceecCCCCCCCcCccEEEeecccCCCCCChhccCCCCCCEEEccCC
Q 048402          133 VLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNS  212 (677)
Q Consensus       133 ~L~L~~n~i~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n  212 (677)
                      +|++++|.++ .++...|.++++|+.|++++|.++...+..|..+++|+.|++++|.+.+..+..+..+++|++|++++|
T Consensus       111 ~L~L~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N  189 (251)
T 3m19_A          111 KLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN  189 (251)
T ss_dssp             EEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred             EEEcCCCcCC-CcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCC
Confidence            5555555554 333334445555555555555555444444555555555555555555556666777888888888888


Q ss_pred             CCCCc
Q 048402          213 GMSDL  217 (677)
Q Consensus       213 ~i~~~  217 (677)
                      .++..
T Consensus       190 ~~~c~  194 (251)
T 3m19_A          190 QFDCS  194 (251)
T ss_dssp             CBCTT
T ss_pred             ceeCC
Confidence            87665

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.84  E-value=2.4e-20  Score=187.03  Aligned_cols=197  Identities=23%  Similarity=0.335  Sum_probs=156.1

Q ss_pred             ccCCCCCCEEecCCCCCCCccCchhhcCCCCCCEEEccCCcCCcccchhhhhccccCcCCccEEEcccCcCccccccccC
Q 048402           23 LGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLG  102 (677)
Q Consensus        23 ~~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~~~~~~  102 (677)
                      +..+++|++|+++ ++.+.. ++ .+..+++|++|++++|.+++..+  +..++     +|++|++++|.+++. + .+.
T Consensus        37 ~~~l~~L~~L~l~-~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~-----~L~~L~L~~n~l~~~-~-~~~  104 (308)
T 1h6u_A           37 QADLDGITTLSAF-GTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLT-----KITELELSGNPLKNV-S-AIA  104 (308)
T ss_dssp             HHHHHTCCEEECT-TSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCC-----SCCEEECCSCCCSCC-G-GGT
T ss_pred             HHHcCCcCEEEee-CCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCC-----CCCEEEccCCcCCCc-h-hhc
Confidence            4567888888888 555553 34 57888888888888888886555  77777     888888888888853 3 588


Q ss_pred             CCCCCCEEECcCCccccCCCcCCCCCCCCCEEEccccccccccChhhhhCCCCCCEEEeeccccceecCCCCCCCcCccE
Q 048402          103 QFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQLVA  182 (677)
Q Consensus       103 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~  182 (677)
                      .+++|++|++++|.+++. + .+..+++|++|++++|.++ .++.  +.++++|+.|++++|.+++...  +..+++|+.
T Consensus       105 ~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~-~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~  177 (308)
T 1h6u_A          105 GLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQIT-NISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTT  177 (308)
T ss_dssp             TCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCC-CCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred             CCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccC-cCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCE
Confidence            888888999888888753 3 3888888899999888887 4443  7788888999998888876554  778888899


Q ss_pred             EEeecccCCCCCChhccCCCCCCEEEccCCCCCCccchHHHhccCCccEEECCCccCcccc
Q 048402          183 LGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQI  243 (677)
Q Consensus       183 L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~  243 (677)
                      |++++|.+.+..+  +..+++|++|++++|.+++..+   +..+++|+.|++++|.+++..
T Consensus       178 L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~---l~~l~~L~~L~l~~N~i~~~~  233 (308)
T 1h6u_A          178 LKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP---LANTSNLFIVTLTNQTITNQP  233 (308)
T ss_dssp             EECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG---GTTCTTCCEEEEEEEEEECCC
T ss_pred             EECCCCccCcChh--hcCCCCCCEEEccCCccCcccc---ccCCCCCCEEEccCCeeecCC
Confidence            9999888876544  7889999999999999988754   466889999999999987643

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.83  E-value=8.1e-20  Score=186.99  Aligned_cols=222  Identities=18%  Similarity=0.182  Sum_probs=137.2

Q ss_pred             CCcCeEecCCCCCcccCCcccccCCCCceecccCccccccCC-cCcCCCCCccE-EECcCCcccccCCccCcCCCCCCEE
Q 048402          299 KSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLP-NSLGSLTSLIW-LLLGKNRLSGTIPVSLKNCTALESL  376 (677)
Q Consensus       299 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~-L~l~~n~~~~~~~~~~~~l~~L~~L  376 (677)
                      +++++|++++|+++...+.+|.++++|++|+|++|++.+.+| .+|.+++++++ +.+++|+++.+.|..|..+++|++|
T Consensus        30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L  109 (350)
T 4ay9_X           30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL  109 (350)
T ss_dssp             TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred             CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence            456777777777765555567777777777777777654443 45667766554 4555677776667777777777777


Q ss_pred             ecCCCcccccCChhhhhccCCceEEEcCC-CcccccCCccccCCC-CCCEEeCCCCcCCCCcCccccccccCccccccCc
Q 048402          377 DVGENEFVGNIPTWTGERFSRMVVLILRS-NNFHGPLPTRLCDLA-FLQILDLADNNLFGTIPKCINNITGMVAANSFTR  454 (677)
Q Consensus       377 ~l~~n~l~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~  454 (677)
                      ++++|++. .+|...+....++..+++.+ +.+....+..|..+. .++.|++++|+++. +|......           
T Consensus       110 ~l~~n~l~-~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~-i~~~~f~~-----------  176 (350)
T 4ay9_X          110 LISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE-IHNSAFNG-----------  176 (350)
T ss_dssp             EEEEECCS-SCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE-ECTTSSTT-----------
T ss_pred             cccccccc-cCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC-CChhhccc-----------
Confidence            77777776 44443333455666777755 455544445555554 56777777777763 33322221           


Q ss_pred             ccCccCCCCCCCcccccceeeEeecCCchhhhhhhccccEEEccc-CcccccCCcccCCCCCCcEEeccCCcceeecccc
Q 048402          455 SSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSR-NNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPES  533 (677)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~  533 (677)
                                                         .+++.+++++ |.++...+..|.++++|++|++++|+++...+..
T Consensus       177 -----------------------------------~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~  221 (350)
T 4ay9_X          177 -----------------------------------TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG  221 (350)
T ss_dssp             -----------------------------------EEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS
T ss_pred             -----------------------------------cchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh
Confidence                                               2346777764 5555444456777888888888888877333333


Q ss_pred             cccCCCCcEEECCCCcccccCccccccCCCCCEEEcccC
Q 048402          534 IGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLSNN  572 (677)
Q Consensus       534 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N  572 (677)
                      |   .+|+.|.+.++.-...+|. +..+++|+.++++++
T Consensus       222 ~---~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~~  256 (350)
T 4ay9_X          222 L---ENLKKLRARSTYNLKKLPT-LEKLVALMEASLTYP  256 (350)
T ss_dssp             C---TTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSCH
T ss_pred             h---ccchHhhhccCCCcCcCCC-chhCcChhhCcCCCC
Confidence            3   4455555544443336663 677778888887654

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.81  E-value=7.8e-19  Score=179.64  Aligned_cols=224  Identities=17%  Similarity=0.087  Sum_probs=104.3

Q ss_pred             CCCEEECcCCccccCCCcCCCCCCCCCEEEccccccccccChhhhhCCCCCCE-EEeeccccceecCCCCCCCcCccEEE
Q 048402          106 NLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSW-FRVGGNKLTLEVRHDWIPPFQLVALG  184 (677)
Q Consensus       106 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~l~~~~~~~l~~L~~-L~l~~n~l~~~~~~~~~~~~~L~~L~  184 (677)
                      ++++|+|++|.|+.+.+.+|.++++|++|+|++|.+.+.++...|.++++++. +.++.|.++...+..|..+++|+.|+
T Consensus        31 ~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~  110 (350)
T 4ay9_X           31 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL  110 (350)
T ss_dssp             TCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEE
T ss_pred             CCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccccc
Confidence            34444444444443333344444444444444444433344334444444333 22333444444444444444444444


Q ss_pred             eecccCCCCCChhccCCCCCCEEEccC-CCCCCccchHHHhccCCccEEECCCccCccccCCccccccccEEEcccCCCC
Q 048402          185 FHNCYVGSRFPQWLHSQKHLQYLNLLN-SGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNNMS  263 (677)
Q Consensus       185 l~~n~~~~~~~~~~~~l~~L~~L~l~~-n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~  263 (677)
                      +++|.+....+..+....++..+++.+ +.+..+.+..+......++.|++++|+++...+..+...+++.+++.++.  
T Consensus       111 l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n--  188 (350)
T 4ay9_X          111 ISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNN--  188 (350)
T ss_dssp             EEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCT--
T ss_pred             ccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCC--
Confidence            444444444443444444455555543 34444333333332335666666666666555554444455555554322  


Q ss_pred             CCCCCCCCCccEEEccCCcccccCChhHhhccCCCCCcCeEecCCCCCcccCCcccccCCCCceecccCccccccCCcCc
Q 048402          264 GPLPLISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSL  343 (677)
Q Consensus       264 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  343 (677)
                                        .++...++    .+..+++|++|++++|+++...+..|.++++|+.+++.  .++ .+| .+
T Consensus       189 ------------------~l~~i~~~----~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~~l~~~--~l~-~lP-~l  242 (350)
T 4ay9_X          189 ------------------NLEELPND----VFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY--NLK-KLP-TL  242 (350)
T ss_dssp             ------------------TCCCCCTT----TTTTEECCSEEECTTSCCCCCCSSSCTTCCEEECTTCT--TCC-CCC-CT
T ss_pred             ------------------cccCCCHH----HhccCcccchhhcCCCCcCccChhhhccchHhhhccCC--CcC-cCC-Cc
Confidence                              12211111    12235666777777777664444444444444433332  233 445 36


Q ss_pred             CCCCCccEEECcCC
Q 048402          344 GSLTSLIWLLLGKN  357 (677)
Q Consensus       344 ~~l~~L~~L~l~~n  357 (677)
                      ..+++|+.+++.++
T Consensus       243 ~~l~~L~~l~l~~~  256 (350)
T 4ay9_X          243 EKLVALMEASLTYP  256 (350)
T ss_dssp             TTCCSCCEEECSCH
T ss_pred             hhCcChhhCcCCCC
Confidence            67777787777654

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.81  E-value=1.5e-19  Score=171.47  Aligned_cols=156  Identities=20%  Similarity=0.233  Sum_probs=116.3

Q ss_pred             EEecCCCcccccCChhhhhccCCceEEEcCCCcccccCC-ccccCCCCCCEEeCCCCcCCCCcCccccccccCccccccC
Q 048402          375 SLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLP-TRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFT  453 (677)
Q Consensus       375 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~  453 (677)
                      .+++++|.+. .+|..+.   +.+++|++++|++++..+ ..|..+++|++|++++|++++..+..|.++++        
T Consensus        15 ~l~~s~n~l~-~iP~~~~---~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~--------   82 (220)
T 2v70_A           15 TVDCSNQKLN-KIPEHIP---QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASG--------   82 (220)
T ss_dssp             EEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTT--------
T ss_pred             EeEeCCCCcc-cCccCCC---CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCC--------
Confidence            5556665554 4554332   345566666666665433 34666777777777777766544444444333        


Q ss_pred             cccCccCCCCCCCcccccceeeEeecCCchhhhhhhccccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeecccc
Q 048402          454 RSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPES  533 (677)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~  533 (677)
                                                            |++|++++|.+++..+..|.++++|++|+|++|++++..|..
T Consensus        83 --------------------------------------L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  124 (220)
T 2v70_A           83 --------------------------------------VNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDS  124 (220)
T ss_dssp             --------------------------------------CCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTS
T ss_pred             --------------------------------------CCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhH
Confidence                                                  377777777777777777889999999999999999888889


Q ss_pred             cccCCCCcEEECCCCcccccCccccccCCCCCEEEcccCcccccCCC
Q 048402          534 IGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLSNNKLTGKIPS  580 (677)
Q Consensus       534 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~  580 (677)
                      |.++++|++|+|++|++++..|..|..+++|++|++++|++.|.++.
T Consensus       125 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l  171 (220)
T 2v70_A          125 FIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYL  171 (220)
T ss_dssp             STTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGG
T ss_pred             cCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCch
Confidence            99999999999999999988899999999999999999999988764

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.80  E-value=1.6e-19  Score=194.13  Aligned_cols=187  Identities=28%  Similarity=0.383  Sum_probs=104.0

Q ss_pred             CcCeEecCCCCCcccCCcccccCCCCceecccCccccccCCcCcCCCCCccEEECcCCcccccCCccCcCCCCCCEEecC
Q 048402          300 SLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVG  379 (677)
Q Consensus       300 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~  379 (677)
                      +++.|++++|.+++ +|..+  .++|++|++++|.++ .+|   ..+++|+.|++++|++++ +|. +..  +|++|+++
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls  128 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD  128 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred             CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence            56667777666664 44433  256666666666666 344   335666666666666664 444 433  66666666


Q ss_pred             CCcccccCChhhhhccCCceEEEcCCCcccccCCccccCCCCCCEEeCCCCcCCCCcCccccccccCccccccCcccCcc
Q 048402          380 ENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQY  459 (677)
Q Consensus       380 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~  459 (677)
                      +|.+++ +|.    .+++|+.|++++|.+++ +|.   .+++|+.|++++|++++ +|. +.                  
T Consensus       129 ~N~l~~-lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~------------------  179 (571)
T 3cvr_A          129 NNQLTM-LPE----LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP------------------  179 (571)
T ss_dssp             SSCCSC-CCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC------------------
T ss_pred             CCcCCC-CCC----cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh------------------
Confidence            666653 554    35666666666666664 333   34566666666666553 332 21                  


Q ss_pred             CCCCCCCcccccceeeEeecCCchhhhhhhccccEEEcccCcccccCCcccCCCCCC-------cEEeccCCcceeeccc
Q 048402          460 LPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKAT-------QSLNFSHNSFTGRIPE  532 (677)
Q Consensus       460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L-------~~L~Ls~n~l~~~~p~  532 (677)
                                                    ++|+.|++++|+++ .+|. +..  +|       +.|+|++|+++ .+|.
T Consensus       180 ------------------------------~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~  224 (571)
T 3cvr_A          180 ------------------------------ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPE  224 (571)
T ss_dssp             ------------------------------TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCG
T ss_pred             ------------------------------CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCH
Confidence                                          12356666666665 3343 333  44       56666666665 4555


Q ss_pred             ccccCCCCcEEECCCCcccccCccccccC
Q 048402          533 SIGAMRSLESIDFSVNQLSGEIPQSMSNL  561 (677)
Q Consensus       533 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l  561 (677)
                      .+..+++|+.|+|++|.+++.+|..+..+
T Consensus       225 ~l~~l~~L~~L~L~~N~l~~~~p~~l~~l  253 (571)
T 3cvr_A          225 NILSLDPTCTIILEDNPLSSRIRESLSQQ  253 (571)
T ss_dssp             GGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred             HHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence            55556666666666666655555555443

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.80  E-value=3.2e-19  Score=168.18  Aligned_cols=181  Identities=16%  Similarity=0.192  Sum_probs=145.3

Q ss_pred             cEEEccCCCCceecCCccccCCCCCCEEecCCCCCCCccCchhhcCCCCCCEEEccCCcCCcccchhhhhccccCcCCcc
Q 048402            5 EYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVSIELE   84 (677)
Q Consensus         5 ~~L~Ls~n~~~~~i~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~L~   84 (677)
                      +.++.+++.++ .+ |..+  .++|++|+++ ++.+.+..+..+..+++|++|++++|.+++..+..+..++     +|+
T Consensus        10 ~~v~c~~~~l~-~~-p~~~--~~~l~~L~l~-~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-----~L~   79 (208)
T 2o6s_A           10 TTVECYSQGRT-SV-PTGI--PAQTTYLDLE-TNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLT-----SLT   79 (208)
T ss_dssp             TEEECCSSCCS-SC-CSCC--CTTCSEEECC-SSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCT-----TCC
T ss_pred             CEEEecCCCcc-CC-CCCC--CCCCcEEEcC-CCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCC-----CcC
Confidence            56788888877 55 3332  5689999998 6777766666788899999999999999877777778888     899


Q ss_pred             EEEcccCcCccccccccCCCCCCCEEECcCCccccCCCcCCCCCCCCCEEEccccccccccChhhhhCCCCCCEEEeecc
Q 048402           85 SLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGN  164 (677)
Q Consensus        85 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~l~~~~~~~l~~L~~L~l~~n  164 (677)
                      +|++++|.+++..+..|.++++|++|++++|.+++..+..+..+++|++|++++|.++ .++...+.++++|+.|++++|
T Consensus        80 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N  158 (208)
T 2o6s_A           80 YLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDN  158 (208)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSC
T ss_pred             EEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccc-eeCHHHhccCCCccEEEecCC
Confidence            9999999998777777889999999999999998776777888999999999999987 566557888899999999988


Q ss_pred             ccceecCCCCCCCcCccEEEeecccCCCCCChhccCCCC
Q 048402          165 KLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKH  203 (677)
Q Consensus       165 ~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~  203 (677)
                      .+..       .++.++.|+++.|.+.+.+|.+++.++.
T Consensus       159 ~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l~~  190 (208)
T 2o6s_A          159 PWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVAP  190 (208)
T ss_dssp             CBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred             Ceec-------CCCCHHHHHHHHHhCCceeeccCccccC
Confidence            7653       4557788888888888888877776554

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.80  E-value=2.7e-19  Score=169.75  Aligned_cols=156  Identities=16%  Similarity=0.198  Sum_probs=124.3

Q ss_pred             CEEecCCCcccccCChhhhhccCCceEEEcCCCcccccCCccccCCCCCCEEeCCCCcCCCCcCccccccccCccccccC
Q 048402          374 ESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFT  453 (677)
Q Consensus       374 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~  453 (677)
                      +.++++++.+. .+|..+.   ++++.|++++|.+++..+..|..+++|++|++++|++.+..|..|.++++        
T Consensus        14 ~~v~c~~~~l~-~iP~~l~---~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~--------   81 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP---ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRS--------   81 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC---TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSS--------
T ss_pred             CEEEcCCCCcC-cCCCccC---cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcC--------
Confidence            45666666665 5665432   56777777777777666667777888888888888877666666555444        


Q ss_pred             cccCccCCCCCCCcccccceeeEeecCCchhhhhhhccccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeecccc
Q 048402          454 RSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPES  533 (677)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~  533 (677)
                                                            |++|+|++|+++...+..|.++++|++|+|++|++++..|..
T Consensus        82 --------------------------------------L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~  123 (220)
T 2v9t_B           82 --------------------------------------LNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDA  123 (220)
T ss_dssp             --------------------------------------CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred             --------------------------------------CCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHH
Confidence                                                  378888888888666677889999999999999999888889


Q ss_pred             cccCCCCcEEECCCCcccccCccccccCCCCCEEEcccCcccccCC
Q 048402          534 IGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLSNNKLTGKIP  579 (677)
Q Consensus       534 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p  579 (677)
                      |..+++|+.|+|++|++++..+..|..+++|++|++++|++.|.++
T Consensus       124 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  169 (220)
T 2v9t_B          124 FQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCH  169 (220)
T ss_dssp             TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred             cCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCc
Confidence            9999999999999999998888889999999999999999988765

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.80  E-value=3.6e-19  Score=167.76  Aligned_cols=64  Identities=16%  Similarity=0.183  Sum_probs=35.8

Q ss_pred             cEEEcccCcccccCCcccCCCCCCcEEeccCCcceeecccccccCCCCcEEECCCCcccccCccccccCCC
Q 048402          493 KETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMS  563 (677)
Q Consensus       493 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~  563 (677)
                      ++|++++|++++..+..+..+++|++|++++|.+.+       .+++|+.|+++.|++++.+|+.++.++.
T Consensus       127 ~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l~~  190 (208)
T 2o6s_A          127 KDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVAP  190 (208)
T ss_dssp             CEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred             CEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCccccC
Confidence            444455554444444445556666666666665542       2345666666666666666666655543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.80  E-value=4.5e-19  Score=190.57  Aligned_cols=114  Identities=29%  Similarity=0.401  Sum_probs=52.4

Q ss_pred             CCcCeEecCCCCCcccCCcccccCCCCceecccCccccccCCcCcCCCCCccEEECcCCcccccCCccCcCCCCCCEEec
Q 048402          299 KSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDV  378 (677)
Q Consensus       299 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l  378 (677)
                      ++|+.|++++|.++ .+|   ..+++|++|++++|.+++ +|. +..  +|+.|++++|++++ +|.   .+++|+.|++
T Consensus        80 ~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~L  147 (571)
T 3cvr_A           80 PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINA  147 (571)
T ss_dssp             TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEEC
T ss_pred             CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeC
Confidence            34555555555544 333   234455555555555543 333 332  45555555555543 222   3445555555


Q ss_pred             CCCcccccCChhhhhccCCceEEEcCCCcccccCCccccCCCCCCEEeCCCCcCC
Q 048402          379 GENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLF  433 (677)
Q Consensus       379 ~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  433 (677)
                      ++|.+++ +|.    .+++|++|++++|++++ +|. +.  ++|+.|++++|+++
T Consensus       148 s~N~l~~-lp~----~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~  193 (571)
T 3cvr_A          148 DNNQLTM-LPE----LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE  193 (571)
T ss_dssp             CSSCCSC-CCC----CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS
T ss_pred             CCCccCc-CCC----cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC
Confidence            5555442 333    23445555555555543 333 32  44555555555444

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.78  E-value=1.3e-18  Score=166.14  Aligned_cols=157  Identities=20%  Similarity=0.214  Sum_probs=129.0

Q ss_pred             CCEEecCCCcccccCChhhhhccCCceEEEcCCCcccccCCccccCCCCCCEEeCCCCcCCCCcCccccccccCcccccc
Q 048402          373 LESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSF  452 (677)
Q Consensus       373 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~  452 (677)
                      -+.++++++.+. .+|..+   .++|++|++++|.+++..|..|..+++|++|++++|++.+..+..|..+         
T Consensus        21 ~~~v~c~~~~l~-~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l---------   87 (229)
T 3e6j_A           21 GTTVDCRSKRHA-SVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSL---------   87 (229)
T ss_dssp             TTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC---------
T ss_pred             CCEeEccCCCcC-ccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccC---------
Confidence            456777777765 666644   3678888888888887777888888888888888888864444444443         


Q ss_pred             CcccCccCCCCCCCcccccceeeEeecCCchhhhhhhccccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeeccc
Q 048402          453 TRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPE  532 (677)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~  532 (677)
                                                           ++|+.|++++|++++..+..|..+++|++|+|++|+++ .+|.
T Consensus        88 -------------------------------------~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~  129 (229)
T 3e6j_A           88 -------------------------------------TQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPR  129 (229)
T ss_dssp             -------------------------------------TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCT
T ss_pred             -------------------------------------CCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCc
Confidence                                                 44588999999998777778899999999999999999 7889


Q ss_pred             ccccCCCCcEEECCCCcccccCccccccCCCCCEEEcccCcccccCCC
Q 048402          533 SIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLSNNKLTGKIPS  580 (677)
Q Consensus       533 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~  580 (677)
                      .+..+++|+.|++++|++++..+..|..+++|+.|++++|++.|.++.
T Consensus       130 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~  177 (229)
T 3e6j_A          130 GIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECRD  177 (229)
T ss_dssp             TGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBGG
T ss_pred             ccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcch
Confidence            999999999999999999977778899999999999999999998863

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.77  E-value=9.9e-19  Score=173.61  Aligned_cols=82  Identities=18%  Similarity=0.357  Sum_probs=60.2

Q ss_pred             hccccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeecccccccCCCCcEEECCCCcccccCccccccCCCCCEEE
Q 048402          489 LNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLN  568 (677)
Q Consensus       489 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  568 (677)
                      +++|+.|++++|++++.  ..+..+++|++|++++|++++..|  +..+++|+.|++++|.+++ +| .+..+++|+.|+
T Consensus       133 l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~  206 (291)
T 1h6t_A          133 LPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLE  206 (291)
T ss_dssp             CTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEE
T ss_pred             CCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEE
Confidence            34456677777776644  467778888888888888875444  7788888888888888874 44 377888888888


Q ss_pred             cccCcccc
Q 048402          569 LSNNKLTG  576 (677)
Q Consensus       569 ls~N~l~~  576 (677)
                      +++|++..
T Consensus       207 l~~n~i~~  214 (291)
T 1h6t_A          207 LFSQECLN  214 (291)
T ss_dssp             EEEEEEEC
T ss_pred             CcCCcccC
Confidence            88888765

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.77  E-value=9.8e-19  Score=179.63  Aligned_cols=179  Identities=25%  Similarity=0.201  Sum_probs=103.8

Q ss_pred             ceecccCccccccCCcCcCCCCCccEEECcCCcccccCCccCc-CCCCCCEEecCCCcccccCChhhhhccCCceEEEcC
Q 048402          326 EILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLK-NCTALESLDVGENEFVGNIPTWTGERFSRMVVLILR  404 (677)
Q Consensus       326 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~  404 (677)
                      +.++++++.++ .+|..+.  +.++.|++++|++++..+..|. ++++|++|++++|.+. .++...+..+++|++|+|+
T Consensus        21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~Ls   96 (361)
T 2xot_A           21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLS   96 (361)
T ss_dssp             TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECC
T ss_pred             CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCC-ccChhhccCCCCCCEEECC
Confidence            56777777776 3554443  3467777777777766666665 6666666666666665 2332222245555555555


Q ss_pred             CCcccccCCccccCCCCCCEEeCCCCcCCCCcCccccccccCccccccCcccCccCCCCCCCcccccceeeEeecCCchh
Q 048402          405 SNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIE  484 (677)
Q Consensus       405 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  484 (677)
                      +|++++..+..|..+++|+.                                                            
T Consensus        97 ~N~l~~~~~~~~~~l~~L~~------------------------------------------------------------  116 (361)
T 2xot_A           97 SNHLHTLDEFLFSDLQALEV------------------------------------------------------------  116 (361)
T ss_dssp             SSCCCEECTTTTTTCTTCCE------------------------------------------------------------
T ss_pred             CCcCCcCCHHHhCCCcCCCE------------------------------------------------------------
Confidence            55555444444444444444                                                            


Q ss_pred             hhhhhccccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeeccccc---ccCCCCcEEECCCCcccccCccccccC
Q 048402          485 YDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESI---GAMRSLESIDFSVNQLSGEIPQSMSNL  561 (677)
Q Consensus       485 ~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~---~~l~~L~~L~Ls~N~l~~~~p~~l~~l  561 (677)
                                |+|++|++++..|..|.++++|++|+|++|++++..+..|   ..+++|+.|+|++|+++...+..+..+
T Consensus       117 ----------L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l  186 (361)
T 2xot_A          117 ----------LLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKL  186 (361)
T ss_dssp             ----------EECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHS
T ss_pred             ----------EECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhc
Confidence                      4555555554555566666666666666666664333334   456677777777777765544556666


Q ss_pred             CC--CCEEEcccCcccccC
Q 048402          562 MS--LNHLNLSNNKLTGKI  578 (677)
Q Consensus       562 ~~--L~~L~ls~N~l~~~~  578 (677)
                      +.  ++.|++++|++.|.+
T Consensus       187 ~~~~l~~l~l~~N~~~C~C  205 (361)
T 2xot_A          187 PAWVKNGLYLHNNPLECDC  205 (361)
T ss_dssp             CHHHHTTEECCSSCEECCH
T ss_pred             cHhhcceEEecCCCccCCc
Confidence            55  366777777776554

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.75  E-value=1e-17  Score=158.79  Aligned_cols=135  Identities=16%  Similarity=0.158  Sum_probs=87.5

Q ss_pred             CEEecCCCcccccCChhhhhccCCceEEEcCCCcccccCCccccCCCCCCEEeCCCCcCCCCcCccccccccCccccccC
Q 048402          374 ESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFT  453 (677)
Q Consensus       374 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~  453 (677)
                      ++|++++|.+.+..+...+..+++|++|++++|.+++..+..|..+++|++|++++|++++..|..|..+++        
T Consensus        35 ~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~--------  106 (220)
T 2v70_A           35 AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLES--------  106 (220)
T ss_dssp             SEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSS--------
T ss_pred             CEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcC--------
Confidence            444444444443323222334555555555555555555555666666666666666665544444443333        


Q ss_pred             cccCccCCCCCCCcccccceeeEeecCCchhhhhhhccccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeecccc
Q 048402          454 RSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPES  533 (677)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~  533 (677)
                                                            |++|++++|++++..|..|.++++|++|+|++|++++..|..
T Consensus       107 --------------------------------------L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  148 (220)
T 2v70_A          107 --------------------------------------LKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGA  148 (220)
T ss_dssp             --------------------------------------CCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTT
T ss_pred             --------------------------------------CCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHH
Confidence                                                  367777777777777778888888888888888888777888


Q ss_pred             cccCCCCcEEECCCCcccccC
Q 048402          534 IGAMRSLESIDFSVNQLSGEI  554 (677)
Q Consensus       534 ~~~l~~L~~L~Ls~N~l~~~~  554 (677)
                      |..+++|++|++++|.+....
T Consensus       149 ~~~l~~L~~L~L~~N~l~c~c  169 (220)
T 2v70_A          149 FDTLHSLSTLNLLANPFNCNC  169 (220)
T ss_dssp             TTTCTTCCEEECCSCCEECSG
T ss_pred             hcCCCCCCEEEecCcCCcCCC
Confidence            888888899999988887543

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.75  E-value=1.1e-17  Score=158.53  Aligned_cols=152  Identities=22%  Similarity=0.292  Sum_probs=100.4

Q ss_pred             cEEEccCCCCceecCCccccCCCCCCEEecCCCCCCCccCchhhcCCCCCCEEEccCCcCCcccchhhhhccccCcCCcc
Q 048402            5 EYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVSIELE   84 (677)
Q Consensus         5 ~~L~Ls~n~~~~~i~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~L~   84 (677)
                      +.++++++.++ .+ |..+.  ++|++|+++ ++.+.+..+..|..+++|++|++++|.+++..|..|..++     +|+
T Consensus        14 ~~v~c~~~~l~-~i-P~~l~--~~l~~L~l~-~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~-----~L~   83 (220)
T 2v9t_B           14 NIVDCRGKGLT-EI-PTNLP--ETITEIRLE-QNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLR-----SLN   83 (220)
T ss_dssp             TEEECTTSCCS-SC-CSSCC--TTCCEEECC-SSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCS-----SCC
T ss_pred             CEEEcCCCCcC-cC-CCccC--cCCCEEECC-CCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCc-----CCC
Confidence            45666666666 55 33332  567777777 5566655555667777777777777777766666666666     677


Q ss_pred             EEEcccCcCccccccccCCCCCCCEEECcCCccccCCCcCCCCCCCCCEEEccccccccccChhhhhCCCCCCEEEeecc
Q 048402           85 SLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGN  164 (677)
Q Consensus        85 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~l~~~~~~~l~~L~~L~l~~n  164 (677)
                      +|++++|.++...+..|.++++|++|++++|.+++..|..|..+++|++|++++|.++ .++...|..+++|+.|++++|
T Consensus        84 ~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N  162 (220)
T 2v9t_B           84 SLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ-TIAKGTFSPLRAIQTMHLAQN  162 (220)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSS
T ss_pred             EEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCC-EECHHHHhCCCCCCEEEeCCC
Confidence            7777777777555555667777777777777777666666777777777777777776 444445666667777777666


Q ss_pred             ccc
Q 048402          165 KLT  167 (677)
Q Consensus       165 ~l~  167 (677)
                      .+.
T Consensus       163 ~~~  165 (220)
T 2v9t_B          163 PFI  165 (220)
T ss_dssp             CEE
T ss_pred             CcC
Confidence            654

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.75  E-value=3.2e-18  Score=169.89  Aligned_cols=172  Identities=18%  Similarity=0.319  Sum_probs=113.6

Q ss_pred             ccCCCCceecccCccccccCCcCcCCCCCccEEECcCCcccccCCccCcCCCCCCEEecCCCcccccCChhhhhccCCce
Q 048402          320 MSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMV  399 (677)
Q Consensus       320 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~  399 (677)
                      ..+++|+.|++++|.+.+. + .+..+++|+.|++++|++++..+  +..+++|++|++++|.+. .++. + ..+++|+
T Consensus        43 ~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~-~~~~-l-~~l~~L~  115 (291)
T 1h6t_A           43 NELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVK-DLSS-L-KDLKKLK  115 (291)
T ss_dssp             HHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CGGG-G-TTCTTCC
T ss_pred             hhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCC-CChh-h-ccCCCCC
Confidence            3555666666666666532 2 25556666666666666664333  566666666666666665 2332 2 2566677


Q ss_pred             EEEcCCCcccccCCccccCCCCCCEEeCCCCcCCCCcCccccccccCccccccCcccCccCCCCCCCcccccceeeEeec
Q 048402          400 VLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSE  479 (677)
Q Consensus       400 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  479 (677)
                      +|++++|++++.  ..+..+++|+.|++++|++++.  ..+.                                      
T Consensus       116 ~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~--------------------------------------  153 (291)
T 1h6t_A          116 SLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLS--------------------------------------  153 (291)
T ss_dssp             EEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGG--------------------------------------
T ss_pred             EEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhc--------------------------------------
Confidence            777777766643  3566777777777777777532  2222                                      


Q ss_pred             CCchhhhhhhccccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeecccccccCCCCcEEECCCCcccc
Q 048402          480 GEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSG  552 (677)
Q Consensus       480 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  552 (677)
                              .+++|+.|++++|++++..+  +..+++|++|++++|.+++ +| .+..+++|+.|++++|+++.
T Consensus       154 --------~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          154 --------RLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             --------GCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred             --------cCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence                    24455788888888876554  8888999999999999884 44 48889999999999999874

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.73  E-value=9.7e-18  Score=182.43  Aligned_cols=105  Identities=21%  Similarity=0.300  Sum_probs=45.9

Q ss_pred             ccCCCCceecccCccccccCCcCcCCCCCccEEECcCCcccccCCccCcCCCCCCEEecCCCcccccCChhhhhccCCce
Q 048402          320 MSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMV  399 (677)
Q Consensus       320 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~  399 (677)
                      ..+++|+.|++++|.+.. ++ .+..+++|+.|+|++|++++..+  +..+++|+.|+|++|.+. .+| .+ ..+++|+
T Consensus        40 ~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~-~l-~~l~~L~  112 (605)
T 1m9s_A           40 NELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIK-DLS-SL-KDLKKLK  112 (605)
T ss_dssp             HHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCC-CCT-TS-TTCTTCC
T ss_pred             hcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCC-CCh-hh-ccCCCCC
Confidence            344445555555554442 22 24444555555555555443322  444445555555554443 222 11 1344444


Q ss_pred             EEEcCCCcccccCCccccCCCCCCEEeCCCCcCC
Q 048402          400 VLILRSNNFHGPLPTRLCDLAFLQILDLADNNLF  433 (677)
Q Consensus       400 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  433 (677)
                      .|+|++|.+.+.  ..+..+++|+.|+|++|++.
T Consensus       113 ~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~  144 (605)
T 1m9s_A          113 SLSLEHNGISDI--NGLVHLPQLESLYLGNNKIT  144 (605)
T ss_dssp             EEECTTSCCCCC--GGGGGCTTCSEEECCSSCCC
T ss_pred             EEEecCCCCCCC--ccccCCCccCEEECCCCccC
Confidence            444444444421  22444444444444444443

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.73  E-value=1.3e-17  Score=171.26  Aligned_cols=177  Identities=23%  Similarity=0.225  Sum_probs=144.3

Q ss_pred             cEEEcccCCCCCCCCCCCCCccEEEccCCcccccCChhHhhccCCCCCcCeEecCCCCCcccCCcccccCCCCceecccC
Q 048402          253 LFLSVHSNNMSGPLPLISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSN  332 (677)
Q Consensus       253 ~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~  332 (677)
                      +.++++++.++.......+.++.|++++|.+++..+..+.   ..+++|+.|++++|.+++..+..|..+++|++|+|++
T Consensus        21 ~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~---~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   97 (361)
T 2xot_A           21 NILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTP---TRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS   97 (361)
T ss_dssp             TEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSS---SCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhh---hcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence            4566666666654444456788888888888876655332   1478999999999999988888899999999999999


Q ss_pred             ccccccCCcCcCCCCCccEEECcCCcccccCCccCcCCCCCCEEecCCCcccccCChhhh---hccCCceEEEcCCCccc
Q 048402          333 NKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTG---ERFSRMVVLILRSNNFH  409 (677)
Q Consensus       333 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~---~~l~~L~~L~L~~n~l~  409 (677)
                      |++++..+..|..+++|+.|++++|++++..+..|.++++|+.|++++|.+. .+|...+   ..+++|+.|+|++|+++
T Consensus        98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~~~~l~~L~~L~L~~N~l~  176 (361)
T 2xot_A           98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLK  176 (361)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCGGGTC----CTTCCEEECCSSCCC
T ss_pred             CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC-eeCHHHhcCcccCCcCCEEECCCCCCC
Confidence            9999887888999999999999999999888889999999999999999998 6777665   35889999999999999


Q ss_pred             ccCCccccCCCC--CCEEeCCCCcCC
Q 048402          410 GPLPTRLCDLAF--LQILDLADNNLF  433 (677)
Q Consensus       410 ~~~~~~~~~l~~--L~~L~Ls~n~l~  433 (677)
                      +..+..+..++.  ++.|++++|++.
T Consensus       177 ~l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          177 KLPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             CCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             ccCHHHhhhccHhhcceEEecCCCcc
Confidence            766667777776  488999999875

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.73  E-value=4e-17  Score=155.92  Aligned_cols=150  Identities=20%  Similarity=0.299  Sum_probs=73.2

Q ss_pred             EEEccCCCCceecCCccccCCCCCCEEecCCCCCCCccCchhhcCCCCCCEEEccCCcCCcccchhhhhccccCcCCccE
Q 048402            6 YLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVSIELES   85 (677)
Q Consensus         6 ~L~Ls~n~~~~~i~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~L~~   85 (677)
                      .++.+++.++ .+ |..+  .++|++|+|+ ++.+.+..|..|..+++|++|++++|.++...+..+..++     +|++
T Consensus        23 ~v~c~~~~l~-~i-p~~~--~~~L~~L~Ls-~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~-----~L~~   92 (229)
T 3e6j_A           23 TVDCRSKRHA-SV-PAGI--PTNAQILYLH-DNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLT-----QLTV   92 (229)
T ss_dssp             EEECTTSCCS-SC-CSCC--CTTCSEEECC-SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-----TCCE
T ss_pred             EeEccCCCcC-cc-CCCC--CCCCCEEEcC-CCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCC-----CcCE
Confidence            4455555544 44 2222  2455555555 4444444444555555555555555555444444444444     5555


Q ss_pred             EEcccCcCccccccccCCCCCCCEEECcCCccccCCCcCCCCCCCCCEEEccccccccccChhhhhCCCCCCEEEeeccc
Q 048402           86 LDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNK  165 (677)
Q Consensus        86 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~l~~~~~~~l~~L~~L~l~~n~  165 (677)
                      |++++|++++..+..|..+++|++|++++|.++ .+|..+..+++|++|++++|.++ .++...|..+++|+.|++++|.
T Consensus        93 L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~  170 (229)
T 3e6j_A           93 LDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLK-SIPHGAFDRLSSLTHAYLFGNP  170 (229)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECTTSC
T ss_pred             EECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCC-ccCHHHHhCCCCCCEEEeeCCC
Confidence            555555555444444455555555555555554 34444555555555555555554 3333344445555555555444


Q ss_pred             cc
Q 048402          166 LT  167 (677)
Q Consensus       166 l~  167 (677)
                      +.
T Consensus       171 ~~  172 (229)
T 3e6j_A          171 WD  172 (229)
T ss_dssp             BC
T ss_pred             cc
Confidence            43

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.72  E-value=3e-17  Score=178.55  Aligned_cols=125  Identities=27%  Similarity=0.383  Sum_probs=60.2

Q ss_pred             CCcCeEecCCCCCcccCCcccccCCCCceecccCccccccCCcCcCCCCCccEEECcCCcccccCCccCcCCCCCCEEec
Q 048402          299 KSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDV  378 (677)
Q Consensus       299 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l  378 (677)
                      +.|+.|++++|.+.. ++ .+..+++|+.|+|++|.+.+..+  +..+++|+.|+|++|.+++ ++ .+..+++|+.|++
T Consensus        43 ~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~L  116 (605)
T 1m9s_A           43 NSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSL  116 (605)
T ss_dssp             TTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEEC
T ss_pred             CCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEe
Confidence            444455555554442 22 24455555555555555543222  4455555555555555543 12 3455555555555


Q ss_pred             CCCcccccCChhhhhccCCceEEEcCCCcccccCCccccCCCCCCEEeCCCCcCCC
Q 048402          379 GENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFG  434 (677)
Q Consensus       379 ~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~  434 (677)
                      ++|.+.+ ++. + ..+++|+.|+|++|.+++.  ..+..+++|+.|+|++|.+.+
T Consensus       117 s~N~l~~-l~~-l-~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~  167 (605)
T 1m9s_A          117 EHNGISD-ING-L-VHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD  167 (605)
T ss_dssp             TTSCCCC-CGG-G-GGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCC
T ss_pred             cCCCCCC-Ccc-c-cCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCC
Confidence            5555542 221 1 1355555555555555533  344555555555555555543

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.72  E-value=1.4e-17  Score=154.33  Aligned_cols=90  Identities=23%  Similarity=0.297  Sum_probs=70.2

Q ss_pred             cccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeecccccccCCCCcEEECCCCcccccCccccccCCCCCEEEcc
Q 048402          491 LVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLS  570 (677)
Q Consensus       491 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls  570 (677)
                      +|++|++++|++++..|..|.++++|++|+|++|++++..|..|.++++|++|++++|++++..|..|..+++|++|+++
T Consensus        55 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  134 (192)
T 1w8a_A           55 HLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLA  134 (192)
T ss_dssp             TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECT
T ss_pred             CCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeC
Confidence            34677777777776677777888888888888888887777778888888888888888887778888888888888888


Q ss_pred             cCcccccCCC
Q 048402          571 NNKLTGKIPS  580 (677)
Q Consensus       571 ~N~l~~~~p~  580 (677)
                      +|++.|.++.
T Consensus       135 ~N~l~c~c~l  144 (192)
T 1w8a_A          135 SNPFNCNCHL  144 (192)
T ss_dssp             TCCBCCSGGG
T ss_pred             CCCccCcCcc
Confidence            8888877664

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.72  E-value=2.2e-17  Score=153.87  Aligned_cols=153  Identities=14%  Similarity=0.216  Sum_probs=91.9

Q ss_pred             cCCCCCCEEecCCCCCCCccCchhhcCCCCCCEEEccCCcCCcccchhhhhccccCcCCccEEEcccCcCccccccccCC
Q 048402           24 GNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQ  103 (677)
Q Consensus        24 ~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~  103 (677)
                      ..+++|++|+++ ++.+. .+| .+..+++|++|++++|.++..  ..+..++     +|++|++++|.+++..+..+..
T Consensus        41 ~~l~~L~~L~l~-~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~~--~~l~~l~-----~L~~L~l~~n~l~~~~~~~l~~  110 (197)
T 4ezg_A           41 AQMNSLTYITLA-NINVT-DLT-GIEYAHNIKDLTINNIHATNY--NPISGLS-----NLERLRIMGKDVTSDKIPNLSG  110 (197)
T ss_dssp             HHHHTCCEEEEE-SSCCS-CCT-TGGGCTTCSEEEEESCCCSCC--GGGTTCT-----TCCEEEEECTTCBGGGSCCCTT
T ss_pred             hhcCCccEEecc-CCCcc-ChH-HHhcCCCCCEEEccCCCCCcc--hhhhcCC-----CCCEEEeECCccCcccChhhcC
Confidence            445666666666 44444 334 466666666666666654422  2455555     6666666666666555666666


Q ss_pred             CCCCCEEECcCCccccCCCcCCCCCCCCCEEEccccc-cccccChhhhhCCCCCCEEEeeccccceecCCCCCCCcCccE
Q 048402          104 FKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNK-LNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQLVA  182 (677)
Q Consensus       104 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-i~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~  182 (677)
                      +++|++|++++|.+++..+..+..+++|++|++++|. +. .++  .+.++++|+.|++++|.+++..  .+..+++|+.
T Consensus       111 l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~--~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~  185 (197)
T 4ezg_A          111 LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM--PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQ  185 (197)
T ss_dssp             CTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG--GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCE
T ss_pred             CCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH--hhcCCCCCCEEECCCCCCcChH--HhccCCCCCE
Confidence            6666666666666665556666666666666666665 43 444  3666666666666666665432  5556666666


Q ss_pred             EEeecccCC
Q 048402          183 LGFHNCYVG  191 (677)
Q Consensus       183 L~l~~n~~~  191 (677)
                      |++++|.++
T Consensus       186 L~l~~N~i~  194 (197)
T 4ezg_A          186 LYAFSQTIG  194 (197)
T ss_dssp             EEECBC---
T ss_pred             EEeeCcccC
Confidence            666666654

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.71  E-value=1.2e-17  Score=162.96  Aligned_cols=80  Identities=19%  Similarity=0.354  Sum_probs=62.1

Q ss_pred             ccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeecccccccCCCCcEEECCCCcccccCccccccCCCCCEEEccc
Q 048402          492 VKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLSN  571 (677)
Q Consensus       492 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~  571 (677)
                      |+.|++++|++++. + .+..+++|++|++++|++++. + .+..+++|+.|++++|++++.  ..+..+++|+.|++++
T Consensus       108 L~~L~L~~N~l~~~-~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~  181 (263)
T 1xeu_A          108 LSRLFLDNNELRDT-D-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTG  181 (263)
T ss_dssp             CCEEECCSSCCSBS-G-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEE
T ss_pred             ccEEEccCCccCCC-h-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCC
Confidence            46677777776643 2 577888888888888888854 4 678888888888888888865  5688888888889988


Q ss_pred             Cccccc
Q 048402          572 NKLTGK  577 (677)
Q Consensus       572 N~l~~~  577 (677)
                      |++.+.
T Consensus       182 N~~~~~  187 (263)
T 1xeu_A          182 QKCVNE  187 (263)
T ss_dssp             EEEECC
T ss_pred             CcccCC
Confidence            888765

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.70  E-value=1.6e-17  Score=168.34  Aligned_cols=74  Identities=11%  Similarity=0.009  Sum_probs=47.4

Q ss_pred             cEEEcccCcccccCCcccCCCCCCc-EEeccCCcceeecccccccCCCCcEEECCCCcccccCccccccCCCCCEEE
Q 048402          493 KETDVSRNNLTKSIPLEMTNLKATQ-SLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLN  568 (677)
Q Consensus       493 ~~L~Ls~n~l~~~~~~~l~~l~~L~-~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  568 (677)
                      +.+++++| ++...+.+|.++++|+ .+++.+ .++.+.+.+|.++++|+.+++++|+++.+.+.+|.++++|+.++
T Consensus       253 ~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          253 LKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             CEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             CEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence            56666665 5545555666666666 666666 55545556666667777777666666656566666666666654

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.70  E-value=4.3e-17  Score=151.86  Aligned_cols=80  Identities=20%  Similarity=0.324  Sum_probs=57.1

Q ss_pred             cEEEcccCcccccCCcccCCCCCCcEEeccCCc-ceeecccccccCCCCcEEECCCCcccccCccccccCCCCCEEEccc
Q 048402          493 KETDVSRNNLTKSIPLEMTNLKATQSLNFSHNS-FTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLSN  571 (677)
Q Consensus       493 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~  571 (677)
                      ++|++++|.+++..+..+..+++|++|++++|+ +. .+| .+..+++|++|++++|++++ ++ .+..+++|++|++++
T Consensus       115 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~  190 (197)
T 4ezg_A          115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFS  190 (197)
T ss_dssp             CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECB
T ss_pred             CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeC
Confidence            566666666665566677778888888888887 55 455 57888888888888888874 33 677888888888888


Q ss_pred             Ccccc
Q 048402          572 NKLTG  576 (677)
Q Consensus       572 N~l~~  576 (677)
                      |++.+
T Consensus       191 N~i~~  195 (197)
T 4ezg_A          191 QTIGG  195 (197)
T ss_dssp             C----
T ss_pred             cccCC
Confidence            87653

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.70  E-value=3e-19  Score=193.22  Aligned_cols=84  Identities=23%  Similarity=0.329  Sum_probs=46.6

Q ss_pred             cEEEcccCcccccCCcccCCCCCCcEEeccCCcceeecccccccCCCCcEEECCCCcccccC-ccccccCCCCCEEEccc
Q 048402          493 KETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEI-PQSMSNLMSLNHLNLSN  571 (677)
Q Consensus       493 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~ls~  571 (677)
                      +.|++++|.++ .+|..++++++|+.|+|++|++++ +| .++++++|+.|+|++|++++.. |..+..+++|+.|++++
T Consensus       466 ~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~  542 (567)
T 1dce_A          466 THLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQG  542 (567)
T ss_dssp             CEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTT
T ss_pred             cEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecC
Confidence            55555555555 445555555555555555555553 44 4555555555555555555444 55555555555555555


Q ss_pred             CcccccCC
Q 048402          572 NKLTGKIP  579 (677)
Q Consensus       572 N~l~~~~p  579 (677)
                      |++++.+|
T Consensus       543 N~l~~~~~  550 (567)
T 1dce_A          543 NSLCQEEG  550 (567)
T ss_dssp             SGGGGSSS
T ss_pred             CcCCCCcc
Confidence            55555444

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.70  E-value=2.7e-17  Score=166.66  Aligned_cols=102  Identities=10%  Similarity=0.020  Sum_probs=67.7

Q ss_pred             CCCcCeEecCCCCCcccCCcccccCCCCceecccCccccccCCcCcCCCCCcc-EEECcCCcccccCCccCcCCCCCCEE
Q 048402          298 PKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLI-WLLLGKNRLSGTIPVSLKNCTALESL  376 (677)
Q Consensus       298 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~-~L~l~~n~~~~~~~~~~~~l~~L~~L  376 (677)
                      +++|+.+++++|.++...+.+|.++++|+.+++++| ++...+.+|.++++|+ .+++.+ .++.+.+.+|.+|++|+.+
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l  302 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV  302 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence            466666666666666555666777777777777666 5555666677777776 777766 5655666667777777777


Q ss_pred             ecCCCcccccCChhhhhccCCceEEE
Q 048402          377 DVGENEFVGNIPTWTGERFSRMVVLI  402 (677)
Q Consensus       377 ~l~~n~l~~~~~~~~~~~l~~L~~L~  402 (677)
                      ++++|.+. .++...|.++++|+.++
T Consensus       303 ~l~~n~i~-~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          303 LATGDKIT-TLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             EECSSCCC-EECTTTTCTTCCCCEEE
T ss_pred             EeCCCccC-ccchhhhcCCcchhhhc
Confidence            77666665 56666666666666664

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.69  E-value=3.6e-17  Score=159.60  Aligned_cols=122  Identities=25%  Similarity=0.325  Sum_probs=67.2

Q ss_pred             CcCeEecCCCCCcccCCcccccCCCCceecccCccccccCCcCcCCCCCccEEECcCCcccccCCccCcCCCCCCEEecC
Q 048402          300 SLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVG  379 (677)
Q Consensus       300 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~  379 (677)
                      +++.++++++.+.+..  .+..+++|++|++++|.++. ++ .+..+++|+.|++++|++++..+  +..+++|++|+++
T Consensus        20 ~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~   93 (263)
T 1xeu_A           20 NAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN   93 (263)
T ss_dssp             HHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred             HHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence            4455556666555322  35566666666666666653 33 45566666666666666664333  5666666666666


Q ss_pred             CCcccccCChhhhhccCCceEEEcCCCcccccCCccccCCCCCCEEeCCCCcCC
Q 048402          380 ENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLF  433 (677)
Q Consensus       380 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  433 (677)
                      +|++. .+|...  . ++|++|++++|++++.  ..+..+++|+.|++++|+++
T Consensus        94 ~N~l~-~l~~~~--~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~  141 (263)
T 1xeu_A           94 RNRLK-NLNGIP--S-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLK  141 (263)
T ss_dssp             SSCCS-CCTTCC--C-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCC
T ss_pred             CCccC-CcCccc--c-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCC
Confidence            66665 233321  1 5555555555555532  23555555555555555554

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.68  E-value=1.2e-16  Score=148.00  Aligned_cols=155  Identities=19%  Similarity=0.259  Sum_probs=108.9

Q ss_pred             CEEecCCCcccccCChhhhhccCCceEEEcCCCcccccCCc-cccCCCCCCEEeCCCCcCCCCcCccccccccCcccccc
Q 048402          374 ESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPT-RLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSF  452 (677)
Q Consensus       374 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~  452 (677)
                      +++++++|.+. .+|..++   .++++|++++|.+++..+. .+..+++|++|++++|++++..|..|.++++|      
T Consensus        11 ~~l~~s~~~l~-~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L------   80 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHI------   80 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTC------
T ss_pred             CEEEcCCCCcC-cCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccC------
Confidence            56666666664 5665443   3677777777777655543 46777788888888887776666665554444      


Q ss_pred             CcccCccCCCCCCCcccccceeeEeecCCchhhhhhhccccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeeccc
Q 048402          453 TRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPE  532 (677)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~  532 (677)
                                                              ++|++++|++++..+..|.++++|++|+|++|++++..|.
T Consensus        81 ----------------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  120 (192)
T 1w8a_A           81 ----------------------------------------QELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPG  120 (192)
T ss_dssp             ----------------------------------------CEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTT
T ss_pred             ----------------------------------------CEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHH
Confidence                                                    7888888888888888889999999999999999988899


Q ss_pred             ccccCCCCcEEECCCCcccccCcc-ccccCCCCCEEEcccCcccccCCC
Q 048402          533 SIGAMRSLESIDFSVNQLSGEIPQ-SMSNLMSLNHLNLSNNKLTGKIPS  580 (677)
Q Consensus       533 ~~~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~ls~N~l~~~~p~  580 (677)
                      .|..+++|++|++++|.+.+..+- .+..  .++...+..+...|..|.
T Consensus       121 ~~~~l~~L~~L~L~~N~l~c~c~l~~~~~--~l~~~~~~~~~~~C~~P~  167 (192)
T 1w8a_A          121 SFEHLNSLTSLNLASNPFNCNCHLAWFAE--WLRKKSLNGGAARCGAPS  167 (192)
T ss_dssp             SSTTCTTCCEEECTTCCBCCSGGGHHHHH--HHHHHCCSGGGCBBCSST
T ss_pred             HhhcCCCCCEEEeCCCCccCcCcchHHHH--HHHHcCCCCCCCCCCCCh
Confidence            999999999999999999865442 1111  122223445555555554

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.67  E-value=1.3e-19  Score=196.11  Aligned_cols=197  Identities=19%  Similarity=0.165  Sum_probs=139.4

Q ss_pred             cCCCCCCEEecCCCCCCCccCchhhcCCCCCCEEEccCCc-------------CCcccchhhhhccccCcCCccEEE-cc
Q 048402           24 GNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVH-------------LSQEISEILNIFSGCVSIELESLD-LR   89 (677)
Q Consensus        24 ~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~n~-------------l~~~~~~~~~~l~~~~~~~L~~L~-L~   89 (677)
                      ..+++|++|+|+ ++.+. .+|..++++++|+.|++++|.             ..+.+|..++.+.     +|+.|+ ++
T Consensus       346 ~~~~~L~~L~Ls-~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~-----~L~~L~~l~  418 (567)
T 1dce_A          346 ATDEQLFRCELS-VEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFS-----TLKAVDPMR  418 (567)
T ss_dssp             STTTTSSSCCCC-HHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHH-----HHHHHCGGG
T ss_pred             ccCccceeccCC-hhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHH-----hcccCcchh
Confidence            568888899998 55554 678888888899988887664             5666777788887     788887 55


Q ss_pred             cCcCccccc-----cccCC--CCCCCEEECcCCccccCCCcCCCCCCCCCEEEccccccccccChhhhhCCCCCCEEEee
Q 048402           90 SSSISGHLT-----DQLGQ--FKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVG  162 (677)
Q Consensus        90 ~n~l~~~~~-----~~~~~--l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~l~~~~~~~l~~L~~L~l~  162 (677)
                      .|.+.....     ..+..  ...|++|++++|.+++ +|. ++.+++|+.|++++|.++ .+|. .++++++|+.|+++
T Consensus       419 ~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~-~~~~l~~L~~L~Ls  494 (567)
T 1dce_A          419 AAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPP-ALAALRCLEVLQAS  494 (567)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCG-GGGGCTTCCEEECC
T ss_pred             hcccchhhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccch-hhhcCCCCCEEECC
Confidence            553321100     00000  1258899999999885 565 888999999999999988 8887 78889999999999


Q ss_pred             ccccceecCCCCCCCcCccEEEeecccCCCCC-ChhccCCCCCCEEEccCCCCCCccch--HHHhccCCccEEE
Q 048402          163 GNKLTLEVRHDWIPPFQLVALGFHNCYVGSRF-PQWLHSQKHLQYLNLLNSGMSDLFPI--RFLKSAFQLKFLD  233 (677)
Q Consensus       163 ~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L~l~~n~i~~~~~~--~~~~~~~~L~~L~  233 (677)
                      +|.+++..  .+..+++|+.|++++|.+.+.. |..++.+++|+.|++++|.+++..+.  .+...+++|+.|+
T Consensus       495 ~N~l~~lp--~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          495 DNALENVD--GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL  566 (567)
T ss_dssp             SSCCCCCG--GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred             CCCCCCCc--ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence            98888642  5666777777777777776665 77777777777777777777665432  2333456666664

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.66  E-value=3.3e-17  Score=182.96  Aligned_cols=190  Identities=20%  Similarity=0.207  Sum_probs=115.6

Q ss_pred             ecCCCCCcccCCcccccCCCCceecccCccccccCCcCcCCCCCccEEECcCCcccccCCccCcCCCCCCEEecCCCccc
Q 048402          305 KLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFV  384 (677)
Q Consensus       305 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~  384 (677)
                      ++..|.+. ..+..|..++.|+.|+|++|.+. .+|..+..+++|+.|+|++|.++ .+|..|..+++|++|+|++|.++
T Consensus       207 ~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~  283 (727)
T 4b8c_D          207 DDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT  283 (727)
T ss_dssp             ----------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS
T ss_pred             ccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC
Confidence            34444444 55777888889999999999888 67767778899999999999988 77888889999999999999988


Q ss_pred             ccCChhhhhccCCceEEEcCCCcccccCCccccCCCCCCEEeCCCCcCCCCcCccccccccCccccccCcccCccCCCCC
Q 048402          385 GNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPL  464 (677)
Q Consensus       385 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~  464 (677)
                       .+|..+. .+++|++|+|++|.++ .+|..|..+++|+.|+|++|++++.+|..+..+...                  
T Consensus       284 -~lp~~~~-~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~------------------  342 (727)
T 4b8c_D          284 -SLPAELG-SCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVT------------------  342 (727)
T ss_dssp             -SCCSSGG-GGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHH------------------
T ss_pred             -ccChhhc-CCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchh------------------
Confidence             7887766 7899999999999987 677789999999999999999988888766543221                  


Q ss_pred             CCcccccceeeEeecCCchhhhhhhccccEEEcccCcccccCCcccCCCCCCcEEeccCC--------cceeeccccccc
Q 048402          465 DGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHN--------SFTGRIPESIGA  536 (677)
Q Consensus       465 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n--------~l~~~~p~~~~~  536 (677)
                                                 ...+++++|.+++.+|..      |+.|++++|        .+.+..+..+..
T Consensus       343 ---------------------------~~~l~l~~N~l~~~~p~~------l~~l~l~~n~~~~~~~~~l~~~~~~~~~~  389 (727)
T 4b8c_D          343 ---------------------------GLIFYLRDNRPEIPLPHE------RRFIEINTDGEPQREYDSLQQSTEHLATD  389 (727)
T ss_dssp             ---------------------------HHHHHHHHCCCCCCCCCC-----------------------------------
T ss_pred             ---------------------------hhHHhhccCcccCcCccc------cceeEeecccccccccCCccccccchhhc
Confidence                                       123678888888777753      445666666        344344444555


Q ss_pred             CCCCcEEECCCCccc
Q 048402          537 MRSLESIDFSVNQLS  551 (677)
Q Consensus       537 l~~L~~L~Ls~N~l~  551 (677)
                      +..++...+++|.+.
T Consensus       390 l~~~~~~~ls~Nil~  404 (727)
T 4b8c_D          390 LAKRTFTVLSYNTLC  404 (727)
T ss_dssp             ------------CCC
T ss_pred             ccccceeeeeccccc
Confidence            666666777777664

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.65  E-value=8.5e-16  Score=142.13  Aligned_cols=90  Identities=20%  Similarity=0.255  Sum_probs=78.2

Q ss_pred             cccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeecccccccCCCCcEEECCCCcccccCccccccCCCCCEEEcc
Q 048402          491 LVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLS  570 (677)
Q Consensus       491 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls  570 (677)
                      +|+.|++++|.+++..+..|.++++|++|+|++|++++..|..|.++++|+.|+|++|+++...+..|..+++|+.|+++
T Consensus        55 ~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  134 (193)
T 2wfh_A           55 HLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIG  134 (193)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeC
Confidence            34777777777777777789999999999999999998888889999999999999999997766779999999999999


Q ss_pred             cCcccccCCC
Q 048402          571 NNKLTGKIPS  580 (677)
Q Consensus       571 ~N~l~~~~p~  580 (677)
                      +|++.|.++-
T Consensus       135 ~N~~~C~c~l  144 (193)
T 2wfh_A          135 ANPLYCDCNM  144 (193)
T ss_dssp             SSCEECSGGG
T ss_pred             CCCeecCCcC
Confidence            9999987653

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.64  E-value=5.2e-17  Score=181.39  Aligned_cols=190  Identities=19%  Similarity=0.175  Sum_probs=106.6

Q ss_pred             cccCccccccCCcCcCCCCCccEEECcCCcccccCCccCcCCCCCCEEecCCCcccccCChhhhhccCCceEEEcCCCcc
Q 048402          329 ELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNF  408 (677)
Q Consensus       329 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l  408 (677)
                      +++.|.+. ..+..+..++.|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..+. .+++|++|+|++|.+
T Consensus       207 ~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~-~l~~L~~L~Ls~N~l  282 (727)
T 4b8c_D          207 DDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIK-NLSNLRVLDLSHNRL  282 (727)
T ss_dssp             ----------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGG-GGTTCCEEECTTSCC
T ss_pred             ccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhh-CCCCCCEEeCcCCcC
Confidence            44445555 55777888888888888888887 55666668888888888888887 7777664 688888888888888


Q ss_pred             cccCCccccCCCCCCEEeCCCCcCCCCcCccccccccCccccccCcccCccCCCCCCCcccccceeeEeecCCchhhhhh
Q 048402          409 HGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEI  488 (677)
Q Consensus       409 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  488 (677)
                      + .+|..+..+++|++|+|++|.+. .+|..|.++++|                                          
T Consensus       283 ~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L------------------------------------------  318 (727)
T 4b8c_D          283 T-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNL------------------------------------------  318 (727)
T ss_dssp             S-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTC------------------------------------------
T ss_pred             C-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCc------------------------------------------
Confidence            8 66788888888888888888876 666666555444                                          


Q ss_pred             hccccEEEcccCcccccCCcccCCCCC-CcEEeccCCcceeecccccccCCCCcEEECCCC--------cccccCccccc
Q 048402          489 LNLVKETDVSRNNLTKSIPLEMTNLKA-TQSLNFSHNSFTGRIPESIGAMRSLESIDFSVN--------QLSGEIPQSMS  559 (677)
Q Consensus       489 l~~L~~L~Ls~n~l~~~~~~~l~~l~~-L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N--------~l~~~~p~~l~  559 (677)
                          +.|+|++|.+++.+|..+..+.. +..++|++|.+++.+|.      .|+.|++++|        .+.+..+..+.
T Consensus       319 ----~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n~~~~~~~~~l~~~~~~~~~  388 (727)
T 4b8c_D          319 ----QFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTDGEPQREYDSLQQSTEHLAT  388 (727)
T ss_dssp             ----CCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C----------------------------
T ss_pred             ----cEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeEeecccccccccCCccccccchhh
Confidence                78888888888877777655432 23467888888877765      3455666666        34444444555


Q ss_pred             cCCCCCEEEcccCcccc
Q 048402          560 NLMSLNHLNLSNNKLTG  576 (677)
Q Consensus       560 ~l~~L~~L~ls~N~l~~  576 (677)
                      .+..+....+++|-+.+
T Consensus       389 ~l~~~~~~~ls~Nil~~  405 (727)
T 4b8c_D          389 DLAKRTFTVLSYNTLCQ  405 (727)
T ss_dssp             -------------CCCG
T ss_pred             cccccceeeeecccccc
Confidence            66667777778887753

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.64  E-value=7.5e-16  Score=139.49  Aligned_cols=132  Identities=24%  Similarity=0.341  Sum_probs=67.5

Q ss_pred             CCCCEEecCCCCCCC-ccCchhhcCCCCCCEEEccCCcCCcccchhhhhccccCcCCccEEEcccCcCccccccccCCCC
Q 048402           27 TSISRLDLSLNTGPE-GRIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFK  105 (677)
Q Consensus        27 ~~L~~L~Ls~~~~~~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~  105 (677)
                      ++|++|+++ ++.+. +.+|..+..+++|++|++++|.+++.  ..+..++     +|++|++++|.+++.+|..+.+++
T Consensus        24 ~~L~~L~l~-~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~-----~L~~L~Ls~N~l~~~~~~~~~~l~   95 (168)
T 2ell_A           24 AAVRELVLD-NCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLP-----KLKKLELSENRIFGGLDMLAEKLP   95 (168)
T ss_dssp             TSCSEEECC-SCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCS-----SCCEEEEESCCCCSCCCHHHHHCT
T ss_pred             ccCCEEECC-CCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCC-----CCCEEECcCCcCchHHHHHHhhCC
Confidence            455555555 34443 44455555555555555555555543  3344444     555555555555544454444555


Q ss_pred             CCCEEECcCCccccCC-CcCCCCCCCCCEEEccccccccccCh---hhhhCCCCCCEEEeeccccc
Q 048402          106 NLDNLDLANNSIVGPI-PQSLGHLSNLRVLQIYNNKLNGTLSE---IHFSNLTKLSWFRVGGNKLT  167 (677)
Q Consensus       106 ~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~i~~~l~~---~~~~~l~~L~~L~l~~n~l~  167 (677)
                      +|++|++++|.+++.. +..+..+++|++|++++|.++ .++.   ..+..+++|+.|++++|.+.
T Consensus        96 ~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A           96 NLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVT-NLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             TCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGG-TSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             CCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCc-chHHHHHHHHHhCccCcEecCCCCChh
Confidence            5555555555555321 144555555555555555554 2222   24555555555555555544

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.61  E-value=1.6e-15  Score=134.27  Aligned_cols=128  Identities=23%  Similarity=0.334  Sum_probs=59.7

Q ss_pred             CCCCEEecCCCCCCC-ccCchhhcCCCCCCEEEccCCcCCcccchhhhhccccCcCCccEEEcccCcCccccccccCCCC
Q 048402           27 TSISRLDLSLNTGPE-GRIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFK  105 (677)
Q Consensus        27 ~~L~~L~Ls~~~~~~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~  105 (677)
                      ++|++|+++ ++.+. +.+|..+..+++|++|++++|.+++.  ..+..++     +|++|++++|.+++.+|..+..++
T Consensus        17 ~~l~~L~l~-~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~-----~L~~L~Ls~n~i~~~~~~~~~~l~   88 (149)
T 2je0_A           17 SDVKELVLD-NSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLN-----KLKKLELSDNRVSGGLEVLAEKCP   88 (149)
T ss_dssp             GGCSEEECT-TCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCT-----TCCEEECCSSCCCSCTHHHHHHCT
T ss_pred             ccCeEEEcc-CCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCC-----CCCEEECCCCcccchHHHHhhhCC
Confidence            444555554 33333 34444444445555555555544433  3333344     455555555555444444444455


Q ss_pred             CCCEEECcCCccccC-CCcCCCCCCCCCEEEccccccccccC--hhhhhCCCCCCEEEee
Q 048402          106 NLDNLDLANNSIVGP-IPQSLGHLSNLRVLQIYNNKLNGTLS--EIHFSNLTKLSWFRVG  162 (677)
Q Consensus       106 ~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~i~~~l~--~~~~~~l~~L~~L~l~  162 (677)
                      +|++|++++|.+++. .+..+..+++|++|++++|.+++..+  ...+..+++|+.|+++
T Consensus        89 ~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           89 NLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             TCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            555555555554432 12445555555555555555542222  0245555555555543

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.60  E-value=1.6e-15  Score=137.34  Aligned_cols=84  Identities=18%  Similarity=0.197  Sum_probs=54.8

Q ss_pred             ccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeec-ccccccCCCCcEEECCCCcccccCc---cccccCCCCCEE
Q 048402          492 VKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRI-PESIGAMRSLESIDFSVNQLSGEIP---QSMSNLMSLNHL  567 (677)
Q Consensus       492 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L~~L  567 (677)
                      |++|++++|++++.+|..+..+++|++|++++|++++.. +..+..+++|+.|++++|.+++..+   ..+..+++|++|
T Consensus        73 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L  152 (168)
T 2ell_A           73 LKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYL  152 (168)
T ss_dssp             CCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEE
T ss_pred             CCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEe
Confidence            355555555555555555556677777777777776432 2567777777777777777774443   366777777777


Q ss_pred             EcccCccc
Q 048402          568 NLSNNKLT  575 (677)
Q Consensus       568 ~ls~N~l~  575 (677)
                      ++++|.+.
T Consensus       153 ~l~~n~~~  160 (168)
T 2ell_A          153 DGYDREDQ  160 (168)
T ss_dssp             TTEETTSC
T ss_pred             cCCCCChh
Confidence            77777765

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.60  E-value=3.9e-15  Score=136.02  Aligned_cols=89  Identities=17%  Similarity=0.192  Sum_probs=71.9

Q ss_pred             ccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeecccccccCCCCcEEECCCCcccccCccccccCCCCCEEEccc
Q 048402          492 VKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLSN  571 (677)
Q Consensus       492 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~  571 (677)
                      |++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|++++|++++..+..+..+++|++|++++
T Consensus        54 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~  133 (177)
T 2o6r_A           54 LTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT  133 (177)
T ss_dssp             CSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred             ccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecC
Confidence            36666666666656666678888999999999999876667788899999999999999866666678889999999999


Q ss_pred             CcccccCCC
Q 048402          572 NKLTGKIPS  580 (677)
Q Consensus       572 N~l~~~~p~  580 (677)
                      |++.|.+|.
T Consensus       134 N~~~~~~~~  142 (177)
T 2o6r_A          134 NPWDCSCPR  142 (177)
T ss_dssp             SCBCCCHHH
T ss_pred             CCeeccCcc
Confidence            999887763

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.60  E-value=3.6e-14  Score=147.47  Aligned_cols=333  Identities=13%  Similarity=0.077  Sum_probs=201.8

Q ss_pred             ecCCccccCCCCCCEEecCCCCCCCccCchhhcCCCCCCEEEccCCcCCcccchhhhhccccCcCCccEEEcccCcCccc
Q 048402           17 TIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVSIELESLDLRSSSISGH   96 (677)
Q Consensus        17 ~i~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~   96 (677)
                      .|...+|.+|++|+.+.+. +. ++..-..+|.++++|+.+++..+ ++......|..+.     .|+.+.+..+ +...
T Consensus        61 sIg~~AF~~c~~L~~i~lp-~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~-----~L~~i~~p~~-l~~i  131 (394)
T 4fs7_A           61 SIGYAAFQGCRKVTEIKIP-ST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCY-----ALKSILLPLM-LKSI  131 (394)
T ss_dssp             EECTTTTTTCTTEEEEECC-TT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCT-----TCCCCCCCTT-CCEE
T ss_pred             EhHHHHhhCCCCceEEEeC-CC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccc-----cchhhcccCc-eeee
Confidence            5667788888888888887 32 44344567888888888888654 5555556666666     6777666543 3434


Q ss_pred             cccccCCCCCCCEEECcCCccccCCCcCCCCCCCCCEEEccccccccccChhhhhCCCCCCEEEeeccccceecCCCCCC
Q 048402           97 LTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIP  176 (677)
Q Consensus        97 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  176 (677)
                      ...+|.++..++.......  ......+|.++++|+.+.+.++. . .++...|.++.+|+.+++..+ ++.....+|..
T Consensus       132 ~~~aF~~~~~~~~~~~~~~--~~i~~~aF~~c~~L~~i~l~~~~-~-~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~  206 (394)
T 4fs7_A          132 GVEAFKGCDFKEITIPEGV--TVIGDEAFATCESLEYVSLPDSM-E-TLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAE  206 (394)
T ss_dssp             CTTTTTTCCCSEEECCTTC--CEECTTTTTTCTTCCEEECCTTC-C-EECTTTTTTCTTCCBCCCCTT-CCEECTTTTTT
T ss_pred             cceeeecccccccccCccc--cccchhhhcccCCCcEEecCCcc-c-eeccccccCCCCceEEEcCCC-ceEeCchhhcc
Confidence            4556666654433333222  22344667788888888876543 3 566667778888887777655 55555666666


Q ss_pred             CcCccEEEeecccCCCCCChhccCCCCCCEEEccCCCCCCccchHHHhccCCccEEECCCccCccccCCccccccccEEE
Q 048402          177 PFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQITDLTKVTQLLFLS  256 (677)
Q Consensus       177 ~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~  256 (677)
                      +..|+.+.+.++..  .+........+|+.+.+... ++.+.. ..+..+..++.+.+..+...-....+.         
T Consensus       207 ~~~L~~i~~~~~~~--~i~~~~~~~~~l~~i~ip~~-~~~i~~-~~f~~~~~l~~~~~~~~~~~i~~~~F~---------  273 (394)
T 4fs7_A          207 CILLENMEFPNSLY--YLGDFALSKTGVKNIIIPDS-FTELGK-SVFYGCTDLESISIQNNKLRIGGSLFY---------  273 (394)
T ss_dssp             CTTCCBCCCCTTCC--EECTTTTTTCCCCEEEECTT-CCEECS-STTTTCSSCCEEEECCTTCEECSCTTT---------
T ss_pred             ccccceeecCCCce--EeehhhcccCCCceEEECCC-ceeccc-ccccccccceeEEcCCCcceeeccccc---------
Confidence            66666666554322  11222333455666655433 222211 122334455555554432221111111         


Q ss_pred             cccCCCCCCCCCCCCCccEEEccCCcccccCChhHhhccCCCCCcCeEecCCCCCcccCCcccccCCCCceecccCcccc
Q 048402          257 VHSNNMSGPLPLISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFT  336 (677)
Q Consensus       257 l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  336 (677)
                                  .+..++.+....+.+..   .    .+..+.+|+.+.+..+ +......+|.++.+|+.+++..+ ++
T Consensus       274 ------------~~~~l~~~~~~~~~i~~---~----~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~  332 (394)
T 4fs7_A          274 ------------NCSGLKKVIYGSVIVPE---K----TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VE  332 (394)
T ss_dssp             ------------TCTTCCEEEECSSEECT---T----TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CC
T ss_pred             ------------cccccceeccCceeecc---c----cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-cc
Confidence                        23445555544433211   1    2334778888888765 55566778888999999998754 66


Q ss_pred             ccCCcCcCCCCCccEEECcCCcccccCCccCcCCCCCCEEecCCCcccccCChhhhhccCCceEE
Q 048402          337 GKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVL  401 (677)
Q Consensus       337 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  401 (677)
                      .....+|.++.+|+.+.+..+ ++.+...+|.+|++|+.+++..+ +. .+ ...+.++++|+.+
T Consensus       333 ~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~-~~~F~~c~~L~~I  393 (394)
T 4fs7_A          333 EIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QY-RYDFEDTTKFKWI  393 (394)
T ss_dssp             EECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GG-GGGBCTTCEEEEE
T ss_pred             EEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-Eh-hheecCCCCCcEE
Confidence            566788889999999999776 66677788999999999998765 22 22 2345567777654

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.60  E-value=1.5e-15  Score=134.40  Aligned_cols=129  Identities=19%  Similarity=0.198  Sum_probs=89.3

Q ss_pred             cCCceEEEcCCCccc-ccCCccccCCCCCCEEeCCCCcCCCCcCccccccccCccccccCcccCccCCCCCCCcccccce
Q 048402          395 FSRMVVLILRSNNFH-GPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEK  473 (677)
Q Consensus       395 l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  473 (677)
                      .++++.|++++|.++ +.+|..+..+++|++|++++|.+.+.  ..+..                               
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~-------------------------------   62 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPK-------------------------------   62 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCC-------------------------------
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhc-------------------------------
Confidence            355666666666666 55666666677777777777766533  22222                               


Q ss_pred             eeEeecCCchhhhhhhccccEEEcccCcccccCCcccCCCCCCcEEeccCCcceee-cccccccCCCCcEEECCCCcccc
Q 048402          474 ASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGR-IPESIGAMRSLESIDFSVNQLSG  552 (677)
Q Consensus       474 ~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~  552 (677)
                                     +++|++|++++|.+++.+|..+..+++|++|++++|++++. .+..++.+++|++|++++|.+++
T Consensus        63 ---------------l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~  127 (149)
T 2je0_A           63 ---------------LNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTN  127 (149)
T ss_dssp             ---------------CTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGG
T ss_pred             ---------------CCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccc
Confidence                           33447777777777766676677788888888888888753 34678888888888888888886


Q ss_pred             cCc---cccccCCCCCEEEccc
Q 048402          553 EIP---QSMSNLMSLNHLNLSN  571 (677)
Q Consensus       553 ~~p---~~l~~l~~L~~L~ls~  571 (677)
                      ..+   ..+..+++|+.||+++
T Consensus       128 ~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A          128 LNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             STTHHHHHHHHCTTCCEETTBC
T ss_pred             hHHHHHHHHHHCCCcccccCCC
Confidence            555   4678888888888763

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.60  E-value=9.8e-14  Score=143.35  Aligned_cols=273  Identities=10%  Similarity=0.026  Sum_probs=190.6

Q ss_pred             ccCCCCCCEEecCCCCCCCccCchhhcCCCCCCEEEccCCcCCcccchhhhhccccCcCCccEEEcccCcCccccccccC
Q 048402           23 LGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLG  102 (677)
Q Consensus        23 ~~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~~~~~~  102 (677)
                      +..+..++.+.+. + .++..-..+|.++ +|+.+.+..+ ++......|.. .     +|+.+.+.. .++.+.+.+|.
T Consensus       109 ~~~~~~l~~i~ip-~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~-----~L~~i~lp~-~l~~I~~~aF~  177 (401)
T 4fdw_A          109 TEILKGYNEIILP-N-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-S-----TVQEIVFPS-TLEQLKEDIFY  177 (401)
T ss_dssp             EEECSSCSEEECC-T-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-C-----CCCEEECCT-TCCEECSSTTT
T ss_pred             EEecCCccEEEEC-C-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-C-----CceEEEeCC-CccEehHHHhh
Confidence            3456788888887 4 3344445677775 7999998765 66666666665 3     588998886 66666778899


Q ss_pred             CCCCCCEEECcCCccccCCCcCCCCCCCCCEEEccccccccccChhhhhCCCCCCEEEeeccccceecCCCCCCCcCccE
Q 048402          103 QFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQLVA  182 (677)
Q Consensus       103 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~  182 (677)
                      +|++|+.+++.+|.++.+...+|. +.+|+.+.+..+ +. .++..+|.++++|+.+++..+ ++.....+|.. .+|+.
T Consensus       178 ~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~-~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~  252 (401)
T 4fdw_A          178 YCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LK-EIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITT  252 (401)
T ss_dssp             TCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CC-EECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSE
T ss_pred             CcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hh-eehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccE
Confidence            999999999999888866666666 689999999854 65 788888999999999999874 66677778877 78999


Q ss_pred             EEeecccCCCCCChhccCCCCCCEEEccCCCCCCccchHHHhccCCccEEECCCccCccccCCccccccccEEEcccCCC
Q 048402          183 LGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNNM  262 (677)
Q Consensus       183 L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~l~~n~~  262 (677)
                      +.+. +.+......+|.++++|+.+++.++.+...                    ......                   
T Consensus       253 i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~--------------------~~~~I~-------------------  292 (401)
T 4fdw_A          253 VKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDD--------------------PEAMIH-------------------  292 (401)
T ss_dssp             EEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCC--------------------TTCEEC-------------------
T ss_pred             EEeC-CCccEEChhHhhCCCCCCEEEeCCccccCC--------------------cccEEC-------------------
Confidence            9994 446666678899999999999988865411                    000000                   


Q ss_pred             CCCCCCCCCCccEEEccCCcccccCChhHhhccCCCCCcCeEecCCCCCcccCCcccccCCCCceecccCccccccCCcC
Q 048402          263 SGPLPLISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNS  342 (677)
Q Consensus       263 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  342 (677)
                                               +.    .+..+++|+.+.+.+ .+......+|.+|++|+.+++..+ ++.....+
T Consensus       293 -------------------------~~----aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~a  341 (401)
T 4fdw_A          293 -------------------------PY----CLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSA  341 (401)
T ss_dssp             -------------------------TT----TTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTS
T ss_pred             -------------------------HH----HhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHh
Confidence                                     00    122245555555552 344455566777777777777544 55556667


Q ss_pred             cCCCCCccEEECcCCcccccCCccCcCCC-CCCEEecCCCcc
Q 048402          343 LGSLTSLIWLLLGKNRLSGTIPVSLKNCT-ALESLDVGENEF  383 (677)
Q Consensus       343 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~-~L~~L~l~~n~l  383 (677)
                      |.++ +|+.+++.+|.+....+..|.+++ .++.+.+..+.+
T Consensus       342 F~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~  382 (401)
T 4fdw_A          342 FNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV  382 (401)
T ss_dssp             SSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred             CCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence            7777 777777777777666666677764 677777776654

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.58  E-value=6.3e-14  Score=144.80  Aligned_cols=219  Identities=11%  Similarity=0.092  Sum_probs=150.5

Q ss_pred             CcCeEecCCCCCcccCCcccccCCCCceecccCccccccCCcCcCCCCCccEEECcCCcccccCCccCcCCCCCCEEecC
Q 048402          300 SLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVG  379 (677)
Q Consensus       300 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~  379 (677)
                      +|+.+.+.. .+....+.+|.+|++|+.+++++|.++.....+|. +.+|+.+.+..+ +..+...+|.++++|+.+++.
T Consensus       158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~  234 (401)
T 4fdw_A          158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIP  234 (401)
T ss_dssp             CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECC
T ss_pred             CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecC
Confidence            577888775 56656677888888888888888888866666666 578888888744 666777788888888888887


Q ss_pred             CCcccccCChhhhhccCCceEEEcCCCcccccCCccccCCCCCCEEeCCCCcCC-----CCcCccccccccCccccccCc
Q 048402          380 ENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLF-----GTIPKCINNITGMVAANSFTR  454 (677)
Q Consensus       380 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-----~~~p~~~~~l~~l~~~~~~~~  454 (677)
                      ++ +. .++...|.+ .+|+.+.+ .+.++..-..+|.+|++|+.+++.+|.+.     ..-+.+|.             
T Consensus       235 ~~-l~-~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~-------------  297 (401)
T 4fdw_A          235 EN-VS-TIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLE-------------  297 (401)
T ss_dssp             TT-CC-EECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTT-------------
T ss_pred             CC-cc-Ccccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhh-------------
Confidence            75 33 566666654 67888888 44566566777888888888888777653     11112222             


Q ss_pred             ccCccCCCCCCCcccccceeeEeecCCchhhhhhhccccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeeccccc
Q 048402          455 SSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESI  534 (677)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~  534 (677)
                                                       .+++|+.+++. +.++.....+|.++++|+.++|..| ++...+.+|
T Consensus       298 ---------------------------------~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF  342 (401)
T 4fdw_A          298 ---------------------------------GCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAF  342 (401)
T ss_dssp             ---------------------------------TCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSS
T ss_pred             ---------------------------------CCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhC
Confidence                                             34444666666 3466555667777777777777554 554556677


Q ss_pred             ccCCCCcEEECCCCcccccCccccccCC-CCCEEEcccCcc
Q 048402          535 GAMRSLESIDFSVNQLSGEIPQSMSNLM-SLNHLNLSNNKL  574 (677)
Q Consensus       535 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~ls~N~l  574 (677)
                      .++ +|+.+++++|.+....+..|..++ .++.|.+..+.+
T Consensus       343 ~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~  382 (401)
T 4fdw_A          343 NNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV  382 (401)
T ss_dssp             SSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred             CCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence            777 777777777777766666676663 667777766554

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.57  E-value=1.9e-14  Score=132.96  Aligned_cols=127  Identities=24%  Similarity=0.398  Sum_probs=77.2

Q ss_pred             CEEecCCCCCCCccCchhhcCCCCCCEEEccCCcCCcccchhhhhccccCcCCccEEEcccCcCccccccccCCCCCCCE
Q 048402           30 SRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDN  109 (677)
Q Consensus        30 ~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  109 (677)
                      ++++++ ++.+. .+|..+.  ++|++|++++|.++ .+|..+..++     +|++|++++|.+++..+..|.++++|++
T Consensus        13 ~~l~~~-~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~-----~L~~L~Ls~N~i~~i~~~~f~~l~~L~~   82 (193)
T 2wfh_A           13 TVVRCS-NKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYK-----HLTLIDLSNNRISTLSNQSFSNMTQLLT   82 (193)
T ss_dssp             TEEECT-TSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCT-----TCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CEEEcC-CCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhccc-----CCCEEECCCCcCCEeCHhHccCCCCCCE
Confidence            455665 44433 3343332  35666666666665 3445566666     6666666666666655566666666666


Q ss_pred             EECcCCccccCCCcCCCCCCCCCEEEccccccccccChhhhhCCCCCCEEEeeccccc
Q 048402          110 LDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLT  167 (677)
Q Consensus       110 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~l~~~~~~~l~~L~~L~l~~n~l~  167 (677)
                      |++++|.+++..+..|..+++|++|++++|.++ .++...|..+++|+.|++++|.+.
T Consensus        83 L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           83 LILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             EECCSSCCCBCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             EECCCCccCEeCHHHhCCCCCCCEEECCCCCCC-eeChhhhhcCccccEEEeCCCCee
Confidence            666666666655566666666666666666665 455445666666666666666654

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.55  E-value=2.2e-13  Score=141.50  Aligned_cols=66  Identities=9%  Similarity=0.121  Sum_probs=40.5

Q ss_pred             ccccccccCCCCCCCEEECcCCccccCCCcCCCCCCCCCEEEccccccccccChhhhhCCCCCCEEEee
Q 048402           94 SGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVG  162 (677)
Q Consensus        94 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~l~~~~~~~l~~L~~L~l~  162 (677)
                      +.+-..+|.++.+|+.+.+..+ ++.+...+|.++++|+.+++..+ ++ .++..+|.++..|+.+.+.
T Consensus        60 tsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p  125 (394)
T 4fs7_A           60 VSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLP  125 (394)
T ss_dssp             EEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCC
T ss_pred             eEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ce-Eccchhhcccccchhhccc
Confidence            3344556777777777777543 55455566777777777777544 43 5666667777766665544

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.55  E-value=3.4e-14  Score=129.68  Aligned_cols=132  Identities=14%  Similarity=0.219  Sum_probs=81.2

Q ss_pred             cEEEccCCCCceecCCccccCCCCCCEEecCCCCCCCccCchhhcCCCCCCEEEccCCcCCcccchhhhhccccCcCCcc
Q 048402            5 EYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVSIELE   84 (677)
Q Consensus         5 ~~L~Ls~n~~~~~i~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~L~   84 (677)
                      +.++++++.++ .+ |..+  .++|++|+++ ++.+.+..+..+..+++|++|++++|.+++..+..+..++     +|+
T Consensus        10 ~~l~~~~~~l~-~~-p~~~--~~~l~~L~l~-~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-----~L~   79 (177)
T 2o6r_A           10 TEIRCNSKGLT-SV-PTGI--PSSATRLELE-SNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLT-----KLT   79 (177)
T ss_dssp             TEEECCSSCCS-SC-CTTC--CTTCSEEECC-SSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCT-----TCC
T ss_pred             CEEEecCCCCc-cC-CCCC--CCCCcEEEeC-CCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCC-----ccC
Confidence            55666666665 44 3222  3566777776 5555555455566666677777766666655555556666     666


Q ss_pred             EEEcccCcCccccccccCCCCCCCEEECcCCccccCCCcCCCCCCCCCEEEccccccccccC
Q 048402           85 SLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLS  146 (677)
Q Consensus        85 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~l~  146 (677)
                      +|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+
T Consensus        80 ~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           80 ILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             EEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            66666666665555556666666666666666665444445666666666666666654443

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.50  E-value=4e-14  Score=129.03  Aligned_cols=83  Identities=16%  Similarity=0.187  Sum_probs=59.1

Q ss_pred             ccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeeccc--ccccCCCCcEEECCCCcccccCccc----cccCCCCC
Q 048402          492 VKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPE--SIGAMRSLESIDFSVNQLSGEIPQS----MSNLMSLN  565 (677)
Q Consensus       492 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~--~~~~l~~L~~L~Ls~N~l~~~~p~~----l~~l~~L~  565 (677)
                      |+.|++++|++++..+..+..+++|++|++++|++. .+|.  .+..+++|+.|++++|.++ .+|..    +..+++|+
T Consensus        66 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~  143 (176)
T 1a9n_A           66 LKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVR  143 (176)
T ss_dssp             CCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCS
T ss_pred             CCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccc
Confidence            455666666665444444577778888888888886 4555  6778888888888888887 45553    77888888


Q ss_pred             EEEcccCcccc
Q 048402          566 HLNLSNNKLTG  576 (677)
Q Consensus       566 ~L~ls~N~l~~  576 (677)
                      .||+++|....
T Consensus       144 ~Ld~~~n~~~~  154 (176)
T 1a9n_A          144 VLDFQKVKLKE  154 (176)
T ss_dssp             EETTEECCHHH
T ss_pred             eeCCCcCCHHH
Confidence            88888887653

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.48  E-value=1.1e-13  Score=125.13  Aligned_cols=90  Identities=22%  Similarity=0.217  Sum_probs=81.2

Q ss_pred             cccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeecccccccCCCCcEEECCCCcccccCccccccCCCCCEEEcc
Q 048402          491 LVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLS  570 (677)
Q Consensus       491 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls  570 (677)
                      .++.|++++|++++..|..|.++++|++|+|++|++++..+..|.++++|++|+|++|++++..+..|..+++|++|+++
T Consensus        31 ~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  110 (170)
T 3g39_A           31 TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLL  110 (170)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeC
Confidence            35888999999998888899999999999999999997777788999999999999999997777789999999999999


Q ss_pred             cCcccccCCC
Q 048402          571 NNKLTGKIPS  580 (677)
Q Consensus       571 ~N~l~~~~p~  580 (677)
                      +|++.|.++.
T Consensus       111 ~N~~~c~c~~  120 (170)
T 3g39_A          111 NNPWDCACSD  120 (170)
T ss_dssp             SSCBCTTBGG
T ss_pred             CCCCCCCchh
Confidence            9999988764

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.48  E-value=6.1e-14  Score=127.79  Aligned_cols=135  Identities=18%  Similarity=0.201  Sum_probs=98.9

Q ss_pred             ccccCCCCCCEEecCCCCCCCccCchhhcCCC-CCCEEEccCCcCCcccchhhhhccccCcCCccEEEcccCcCcccccc
Q 048402           21 EALGNLTSISRLDLSLNTGPEGRIPRSMASLC-NLKSINLRGVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTD   99 (677)
Q Consensus        21 ~~~~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~~~   99 (677)
                      ..+..+++|++|+++ ++.+.. ++. +..+. +|++|++++|.+++.  ..+..++     +|++|++++|.+++..+.
T Consensus        13 ~~~~~~~~L~~L~l~-~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~-----~L~~L~Ls~N~l~~~~~~   82 (176)
T 1a9n_A           13 AQYTNAVRDRELDLR-GYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLR-----RLKTLLVNNNRICRIGEG   82 (176)
T ss_dssp             CEEECTTSCEEEECT-TSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCS-----SCCEEECCSSCCCEECSC
T ss_pred             HhcCCcCCceEEEee-CCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCC-----CCCEEECCCCcccccCcc
Confidence            346677888888888 566653 344 44444 888888888888764  4566666     788888888888866555


Q ss_pred             ccCCCCCCCEEECcCCccccCCCc--CCCCCCCCCEEEccccccccccChh---hhhCCCCCCEEEeeccccc
Q 048402          100 QLGQFKNLDNLDLANNSIVGPIPQ--SLGHLSNLRVLQIYNNKLNGTLSEI---HFSNLTKLSWFRVGGNKLT  167 (677)
Q Consensus       100 ~~~~l~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~i~~~l~~~---~~~~l~~L~~L~l~~n~l~  167 (677)
                      .|..+++|++|++++|.++ .+|.  .+..+++|++|++++|.+. .+|..   .+..+++|+.|++++|...
T Consensus        83 ~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           83 LDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             HHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             hhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            5678888888888888886 4554  6778888888888888886 56653   4778888888888887654

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.45  E-value=1.5e-15  Score=141.42  Aligned_cols=83  Identities=19%  Similarity=0.284  Sum_probs=52.8

Q ss_pred             hccccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeecc-cccccCCCCcEEECCCCcccccCccc----------
Q 048402          489 LNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIP-ESIGAMRSLESIDFSVNQLSGEIPQS----------  557 (677)
Q Consensus       489 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~----------  557 (677)
                      +++|+.|++++|++++ +| .+..+++|++|++++|++++..+ ..+..+++|++|++++|.+++..|..          
T Consensus        92 ~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~  169 (198)
T 1ds9_A           92 ADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEV  169 (198)
T ss_dssp             HHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHH
T ss_pred             CCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHH
Confidence            3444667777776664 33 46667777777777777763322 35667777777777777776655542          


Q ss_pred             cccCCCCCEEEcccCccc
Q 048402          558 MSNLMSLNHLNLSNNKLT  575 (677)
Q Consensus       558 l~~l~~L~~L~ls~N~l~  575 (677)
                      +..+++|+.||  +|+++
T Consensus       170 ~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          170 VKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             HHHCSSCSEEC--CGGGT
T ss_pred             HHhCCCcEEEC--CcccC
Confidence            66677777776  55554

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.44  E-value=3.3e-13  Score=122.25  Aligned_cols=90  Identities=24%  Similarity=0.255  Sum_probs=77.9

Q ss_pred             cccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeecccccccCCCCcEEECCCCcccccCccccccCCCCCEEEcc
Q 048402          491 LVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLS  570 (677)
Q Consensus       491 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls  570 (677)
                      .|+.|++++|++++..|..|.++++|++|+|++|++++..+..|.++++|++|+|++|++++..+..|..+++|++|+++
T Consensus        34 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~  113 (174)
T 2r9u_A           34 DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLY  113 (174)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECC
T ss_pred             CCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeC
Confidence            35788888888888888889999999999999999997666678899999999999999997666679999999999999


Q ss_pred             cCcccccCCC
Q 048402          571 NNKLTGKIPS  580 (677)
Q Consensus       571 ~N~l~~~~p~  580 (677)
                      +|++.+.++.
T Consensus       114 ~N~~~c~~~~  123 (174)
T 2r9u_A          114 NNPWDCECRD  123 (174)
T ss_dssp             SSCBCTTBGG
T ss_pred             CCCccccccc
Confidence            9999987663

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.40  E-value=4.3e-11  Score=124.20  Aligned_cols=130  Identities=15%  Similarity=0.185  Sum_probs=80.7

Q ss_pred             cCCCCCcCeEecCCCCCcccCCcccccCCCCceecccCccccccCCcCcCCCCCccEEECcCCcccccCCccCcCCCCCC
Q 048402          295 INEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALE  374 (677)
Q Consensus       295 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~  374 (677)
                      +..+..|+.+.+..+... ....+|.++++|+.+.+. +.++.....+|.++.+|+.+.+..+ ++.+...+|.+|.+|+
T Consensus       261 F~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~  337 (394)
T 4gt6_A          261 FDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLE  337 (394)
T ss_dssp             TTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred             eeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCC
Confidence            334667777777655433 555667777788887775 3455456667777888888887654 5556667788888888


Q ss_pred             EEecCCCcccccCChhhhhccCCceEEEcCCCcccccCCccccCCCCCCEEeCCCCcC
Q 048402          375 SLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNL  432 (677)
Q Consensus       375 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l  432 (677)
                      .+.+..+ +. .+....|.+|.+|+.+++.++....   ..+..+.+|+.+.+..+.+
T Consensus       338 ~i~ip~s-v~-~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          338 RIAIPSS-VT-KIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             EEEECTT-CC-BCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred             EEEECcc-cC-EEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence            8887654 43 6677777777888888777765431   3456667777777766544

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.39  E-value=4.2e-15  Score=138.44  Aligned_cols=162  Identities=16%  Similarity=0.175  Sum_probs=97.8

Q ss_pred             cccCCCCceecccCccccccCCcCcCCCCCccEEECcCCcccccCCccCcCCCCCCEEecCCCcccccCChhhhhccCCc
Q 048402          319 WMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRM  398 (677)
Q Consensus       319 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L  398 (677)
                      |.....++.++++.+.+.+..|.                 ++ .+|..+..+++|++|++++|.+.+ +| .+ ..+++|
T Consensus        14 ~~~~~~l~~l~l~~~~l~~~~~~-----------------l~-~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~-~~l~~L   72 (198)
T 1ds9_A           14 FEERKSVVATEAEKVELHGMIPP-----------------IE-KMDATLSTLKACKHLALSTNNIEK-IS-SL-SGMENL   72 (198)
T ss_dssp             HHHTTCCCCTTCSEEECCBCCTT-----------------CC-CCHHHHHHTTTCSEEECSEEEESC-CC-CH-HHHTTC
T ss_pred             HHhcccccCcchheeEeccccCc-----------------Hh-hhhHHHhcCCCCCEEECCCCCCcc-cc-cc-ccCCCC
Confidence            45566777777777777765554                 00 112234444555555555555442 44 22 245555


Q ss_pred             eEEEcCCCcccccCCccccCCCCCCEEeCCCCcCCCCcCccccccccCccccccCcccCccCCCCCCCcccccceeeEee
Q 048402          399 VVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVS  478 (677)
Q Consensus       399 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  478 (677)
                      ++|++++|.++ .+|..+..+++|++|++++|++++ +| .+                                      
T Consensus        73 ~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~--------------------------------------  111 (198)
T 1ds9_A           73 RILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GI--------------------------------------  111 (198)
T ss_dssp             CEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HH--------------------------------------
T ss_pred             CEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-cc--------------------------------------
Confidence            55555555555 344445555666677776666653 22 12                                      


Q ss_pred             cCCchhhhhhhccccEEEcccCcccccCC-cccCCCCCCcEEeccCCcceeeccc----------ccccCCCCcEEECCC
Q 048402          479 EGEAIEYDEILNLVKETDVSRNNLTKSIP-LEMTNLKATQSLNFSHNSFTGRIPE----------SIGAMRSLESIDFSV  547 (677)
Q Consensus       479 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~p~----------~~~~l~~L~~L~Ls~  547 (677)
                              ..+++|+.|++++|++++..+ ..+..+++|++|++++|.+.+..|.          .+..+++|+.||  +
T Consensus       112 --------~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~  181 (198)
T 1ds9_A          112 --------EKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--G  181 (198)
T ss_dssp             --------HHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--C
T ss_pred             --------ccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--C
Confidence                    234555777888877775332 4678888999999999988766554          378899999887  6


Q ss_pred             Ccccc
Q 048402          548 NQLSG  552 (677)
Q Consensus       548 N~l~~  552 (677)
                      |.++.
T Consensus       182 ~~i~~  186 (198)
T 1ds9_A          182 MPVDV  186 (198)
T ss_dssp             GGGTT
T ss_pred             cccCH
Confidence            76653

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.37  E-value=2.8e-11  Score=125.63  Aligned_cols=127  Identities=10%  Similarity=0.121  Sum_probs=99.0

Q ss_pred             CcCeEecCCCCCcccCCcccccCCCCceecccCccccccCCcCcCCCCCccEEECcCCcccccCCccCcCCCCCCEEecC
Q 048402          300 SLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVG  379 (677)
Q Consensus       300 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~  379 (677)
                      .+..+.+.. .+......+|.++..|+.+.+..+... ....+|.+++.|+.+.+. +.++.+...+|.+|.+|+.+++.
T Consensus       243 ~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp  319 (394)
T 4gt6_A          243 EDPAFKIPN-GVARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIP  319 (394)
T ss_dssp             CCSEEECCT-TEEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECC
T ss_pred             ccceEEcCC-cceEcccceeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeC
Confidence            344444433 233355678999999999999876544 667789999999999996 45666777899999999999998


Q ss_pred             CCcccccCChhhhhccCCceEEEcCCCcccccCCccccCCCCCCEEeCCCCcC
Q 048402          380 ENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNL  432 (677)
Q Consensus       380 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l  432 (677)
                      .+ ++ .+....|.++.+|+.+.+..+ ++..-..+|.+|++|+.+++.++..
T Consensus       320 ~~-v~-~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~  369 (394)
T 4gt6_A          320 EG-IT-QILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRS  369 (394)
T ss_dssp             TT-CC-EECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHH
T ss_pred             Cc-cc-EehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCcee
Confidence            65 43 677788888999999999654 6656678899999999999988754

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.34  E-value=5e-12  Score=114.10  Aligned_cols=108  Identities=15%  Similarity=0.256  Sum_probs=85.4

Q ss_pred             CCEEecCCCCCCCccCchhhcCCCCCCEEEccCCcCCcccchhhhhccccCcCCccEEEcccCcCccccccccCCCCCCC
Q 048402           29 ISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLD  108 (677)
Q Consensus        29 L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~  108 (677)
                      .++++++ ++.+.. +|..+.  ++|++|++++|.+++..+..|..+.     +|++|++++|++++..+..|.++++|+
T Consensus        11 ~~~l~~s-~n~l~~-ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~-----~L~~L~Ls~N~l~~l~~~~f~~l~~L~   81 (170)
T 3g39_A           11 GTTVDCS-GKSLAS-VPTGIP--TTTQVLYLYDNQITKLEPGVFDRLT-----QLTRLDLDNNQLTVLPAGVFDKLTQLT   81 (170)
T ss_dssp             TTEEECT-TSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCT-----TCSEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             CCEEEeC-CCCcCc-cCccCC--CCCcEEEcCCCcCCccChhhhcCcc-----cCCEEECCCCCcCccChhhccCCCCCC
Confidence            5678887 555553 555443  6788888888888888788888888     888888888888877777788888899


Q ss_pred             EEECcCCccccCCCcCCCCCCCCCEEEcccccccccc
Q 048402          109 NLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTL  145 (677)
Q Consensus       109 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~l  145 (677)
                      +|++++|.+++..+..|..+++|++|++++|.+....
T Consensus        82 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c  118 (170)
T 3g39_A           82 QLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC  118 (170)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred             EEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence            9999999888766667888889999999988886443

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.32  E-value=8e-12  Score=113.08  Aligned_cols=106  Identities=16%  Similarity=0.287  Sum_probs=86.9

Q ss_pred             CCEEecCCCCCCCccCchhhcCCCCCCEEEccCCcCCcccchhhhhccccCcCCccEEEcccCcCccccccccCCCCCCC
Q 048402           29 ISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLD  108 (677)
Q Consensus        29 L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~  108 (677)
                      -+.++++ ++.+. .+|..+.  ++|++|++++|.+++..|..+..++     +|++|+|++|++++..+..|.++++|+
T Consensus        14 ~~~l~~~-~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~-----~L~~L~Ls~N~l~~i~~~~~~~l~~L~   84 (174)
T 2r9u_A           14 QTLVNCQ-NIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLV-----NLQQLYFNSNKLTAIPTGVFDKLTQLT   84 (174)
T ss_dssp             SSEEECC-SSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCT-----TCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             CcEEEeC-CCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCc-----CCCEEECCCCCCCccChhHhCCcchhh
Confidence            3678888 66554 5666554  7889999999998888888888888     899999999999877677788899999


Q ss_pred             EEECcCCccccCCCcCCCCCCCCCEEEcccccccc
Q 048402          109 NLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNG  143 (677)
Q Consensus       109 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~  143 (677)
                      +|++++|.+++..+..|..+++|++|++++|.+..
T Consensus        85 ~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c  119 (174)
T 2r9u_A           85 QLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDC  119 (174)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred             EEECCCCccceeCHHHhccccCCCEEEeCCCCccc
Confidence            99999999986666668899999999999998873

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.30  E-value=1.2e-13  Score=141.19  Aligned_cols=172  Identities=19%  Similarity=0.130  Sum_probs=90.2

Q ss_pred             CCccEEECcCCcccccCCccCc-----CCCCCCEEecCCCcccccCChhhhhccCCceEEEcCCCcccccCCccc-----
Q 048402          347 TSLIWLLLGKNRLSGTIPVSLK-----NCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRL-----  416 (677)
Q Consensus       347 ~~L~~L~l~~n~~~~~~~~~~~-----~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-----  416 (677)
                      +.|+.|++++|.++......+.     ..++|++|++++|.+.......+...+++|+.|+|++|.++......+     
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~  151 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL  151 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence            3555666666665533222222     225677777777766543333333345667777777777653322222     


Q ss_pred             cCCCCCCEEeCCCCcCCCCcCccccccccCccccccCcccCccCCCCCCCcccccceeeEeecCCchhhhhhhccccEEE
Q 048402          417 CDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETD  496 (677)
Q Consensus       417 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~  496 (677)
                      ...++|++|++++|.++..-...+                                          .......++|++|+
T Consensus       152 ~~~~~L~~L~Ls~n~l~~~~~~~l------------------------------------------~~~L~~~~~L~~L~  189 (372)
T 3un9_A          152 HDQCQITTLRLSNNPLTAAGVAVL------------------------------------------MEGLAGNTSVTHLS  189 (372)
T ss_dssp             STTCCCCEEECCSSCCHHHHHHHH------------------------------------------HHHHHTCSSCCEEE
T ss_pred             hcCCccceeeCCCCCCChHHHHHH------------------------------------------HHHHhcCCCcCEEe
Confidence            235667777777776642100000                                          01112234456666


Q ss_pred             cccCccccc----CCcccCCCCCCcEEeccCCcceee----cccccccCCCCcEEECCCCcccccCcccccc
Q 048402          497 VSRNNLTKS----IPLEMTNLKATQSLNFSHNSFTGR----IPESIGAMRSLESIDFSVNQLSGEIPQSMSN  560 (677)
Q Consensus       497 Ls~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~  560 (677)
                      |++|.+...    ++..+...++|++|+|++|.+++.    ++..+...++|++|+|++|.|+......+..
T Consensus       190 Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~  261 (372)
T 3un9_A          190 LLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRD  261 (372)
T ss_dssp             CTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHH
T ss_pred             CCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHH
Confidence            666666532    234455566677777777776542    2233445566777777777766544444433

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.23  E-value=2.1e-11  Score=124.31  Aligned_cols=85  Identities=19%  Similarity=0.215  Sum_probs=50.5

Q ss_pred             cEEEccc-CcccccCCcccCCCCCCcEEeccCCcceeecccccccCCCCcEEECCCCcccccCccccccCCCCCEEEccc
Q 048402          493 KETDVSR-NNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLSN  571 (677)
Q Consensus       493 ~~L~Ls~-n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~  571 (677)
                      +.|+|++ |.+++..+..|.++++|+.|+|++|+|++..|..|.++++|+.|+|++|+|++..+..|..++ |+.|++++
T Consensus        34 ~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~  112 (347)
T 2ifg_A           34 TELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSG  112 (347)
T ss_dssp             SEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCS
T ss_pred             eEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeC
Confidence            5555553 555555555566666666666666666665566666666666666666666644444444444 66666666


Q ss_pred             CcccccC
Q 048402          572 NKLTGKI  578 (677)
Q Consensus       572 N~l~~~~  578 (677)
                      |++.|.+
T Consensus       113 N~~~c~c  119 (347)
T 2ifg_A          113 NPLHCSC  119 (347)
T ss_dssp             SCCCCCG
T ss_pred             CCccCCC
Confidence            6666544

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.15  E-value=3.3e-12  Score=130.64  Aligned_cols=170  Identities=22%  Similarity=0.268  Sum_probs=93.8

Q ss_pred             CCCCCEEEccCCcCCcccchhhhhccccCcCCccEEEcccCcCcccccccc-CCCCCCCEEECcCCccccCCCcCC----
Q 048402           51 LCNLKSINLRGVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQL-GQFKNLDNLDLANNSIVGPIPQSL----  125 (677)
Q Consensus        51 l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~----  125 (677)
                      +++|++|++++|.++......+...-.....+|++|+|++|.++......+ ..+++|++|+|++|.++......+    
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            356777777777776655544444311111167777777777764322222 234567777777777754333333    


Q ss_pred             -CCCCCCCEEEccccccccc----cChhhhhCCCCCCEEEeeccccceecCCCCCCCcCccEEEeecccCCCCCChhccC
Q 048402          126 -GHLSNLRVLQIYNNKLNGT----LSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHS  200 (677)
Q Consensus       126 -~~l~~L~~L~L~~n~i~~~----l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~  200 (677)
                       ...++|++|+|++|.++..    ++. .+..+++|++|++++|.+......                    .++..+..
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~-~L~~~~~L~~L~Ls~N~l~~~g~~--------------------~L~~~L~~  209 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLME-GLAGNTSVTHLSLLHTGLGDEGLE--------------------LLAAQLDR  209 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHH-HHHTCSSCCEEECTTSSCHHHHHH--------------------HHHHHGGG
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHH-HHhcCCCcCEEeCCCCCCCcHHHH--------------------HHHHHHhc
Confidence             2456777777777776521    222 345666777777777766532110                    12233444


Q ss_pred             CCCCCEEEccCCCCCCccchHHHh---ccCCccEEECCCccCcc
Q 048402          201 QKHLQYLNLLNSGMSDLFPIRFLK---SAFQLKFLDLGLNQFHG  241 (677)
Q Consensus       201 l~~L~~L~l~~n~i~~~~~~~~~~---~~~~L~~L~Ls~n~l~~  241 (677)
                      .++|++|++++|.+++.....+..   ..++|++|++++|.++.
T Consensus       210 ~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          210 NRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS  253 (372)
T ss_dssp             CSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred             CCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence            556666666666665543333222   23566666666666653

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.14  E-value=1.1e-10  Score=118.89  Aligned_cols=101  Identities=17%  Similarity=0.171  Sum_probs=87.2

Q ss_pred             cEEEcccC-cccccCCcccCCCCCCcEEeccC-CcceeecccccccCCCCcEEECCCCcccccCccccccCCCCCEEEcc
Q 048402          493 KETDVSRN-NLTKSIPLEMTNLKATQSLNFSH-NSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLS  570 (677)
Q Consensus       493 ~~L~Ls~n-~l~~~~~~~l~~l~~L~~L~Ls~-n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls  570 (677)
                      ..++++++ ++++ +|. +..+++|++|+|++ |.+++..+..|+++++|+.|+|++|+|++..|..|..+++|++|+|+
T Consensus        11 ~~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           11 SGLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             SCEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CEEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence            46799998 8984 777 99999999999996 99998888899999999999999999999999999999999999999


Q ss_pred             cCcccccCCCCCCCCCcCcccccCC
Q 048402          571 NNKLTGKIPSSTQLQSFDASSFTGN  595 (677)
Q Consensus       571 ~N~l~~~~p~~~~~~~l~~~~~~~n  595 (677)
                      +|++++..|.......+..+++.+|
T Consensus        89 ~N~l~~~~~~~~~~~~L~~l~l~~N  113 (347)
T 2ifg_A           89 FNALESLSWKTVQGLSLQELVLSGN  113 (347)
T ss_dssp             SSCCSCCCSTTTCSCCCCEEECCSS
T ss_pred             CCccceeCHHHcccCCceEEEeeCC
Confidence            9999977665433333666666665

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.11  E-value=8.3e-09  Score=106.40  Aligned_cols=128  Identities=10%  Similarity=0.080  Sum_probs=69.1

Q ss_pred             CCCcCeEecCCCCCcccCCcccccCCCCceecccCccccccCCcCcCCCCCccEEECcCCcccccCCccCcCCCCCCEEe
Q 048402          298 PKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLD  377 (677)
Q Consensus       298 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~  377 (677)
                      +..++.+.+..+ +......+|.++..|+.+.+..+ ++.....+|.++.+|+.+.+..+ +..+...+|.+|++|+.+.
T Consensus       216 ~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~  292 (379)
T 4h09_A          216 GKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVV  292 (379)
T ss_dssp             CSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEE
T ss_pred             ccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccccccc
Confidence            444555555433 22234445555666666666543 33344455566666666665433 3334445566666666666


Q ss_pred             cCCCcccccCChhhhhccCCceEEEcCCCcccccCCccccCCCCCCEEeCCCC
Q 048402          378 VGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADN  430 (677)
Q Consensus       378 l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n  430 (677)
                      +.++.+. .++...|.++.+|+.+.+..+ ++.+-..+|.+|++|+.+.+..+
T Consensus       293 l~~~~i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~  343 (379)
T 4h09_A          293 MDNSAIE-TLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS  343 (379)
T ss_dssp             ECCTTCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred             ccccccc-eehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence            6655554 455555555666666666543 44344456666666666666443

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.09  E-value=2.3e-08  Score=103.14  Aligned_cols=111  Identities=17%  Similarity=0.204  Sum_probs=67.0

Q ss_pred             cCCcccccCCCCceecccCccccccCCcCcCCCCCccEEECcCCcccccCCccCcCCCCCCEEecCCCcccccCChhhhh
Q 048402          314 EIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGE  393 (677)
Q Consensus       314 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  393 (677)
                      ....++..+.+|+.+.+..+ +......+|.++..|+.+.+..+ ++.+...+|.++.+|+.+.+..+ +. .++...+.
T Consensus       208 i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~-~i~~~aF~  283 (379)
T 4h09_A          208 VTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VK-TVPYLLCS  283 (379)
T ss_dssp             ECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CS-EECTTTTT
T ss_pred             Eeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ce-eccccccc
Confidence            34455666777777777554 33345566777777777777654 44455666777777777776543 32 45555555


Q ss_pred             ccCCceEEEcCCCcccccCCccccCCCCCCEEeCC
Q 048402          394 RFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLA  428 (677)
Q Consensus       394 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  428 (677)
                      ++.+|+.+.+.++.++..-..+|.+|.+|+.+++.
T Consensus       284 ~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp  318 (379)
T 4h09_A          284 GCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLP  318 (379)
T ss_dssp             TCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECC
T ss_pred             cccccccccccccccceehhhhhcCCCCCCEEEcC
Confidence            56666666666655554445556666666665553

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.70  E-value=7e-09  Score=104.92  Aligned_cols=65  Identities=15%  Similarity=0.144  Sum_probs=34.6

Q ss_pred             CcCccEEEeecccCCCCCChhc---cCCCCCCEEEccCCCCCCccchHHH---hccCCccEEECCCccCcc
Q 048402          177 PFQLVALGFHNCYVGSRFPQWL---HSQKHLQYLNLLNSGMSDLFPIRFL---KSAFQLKFLDLGLNQFHG  241 (677)
Q Consensus       177 ~~~L~~L~l~~n~~~~~~~~~~---~~l~~L~~L~l~~n~i~~~~~~~~~---~~~~~L~~L~Ls~n~l~~  241 (677)
                      +++|+.|++.+|.+....+..+   ..+++|++|+++.|.+.+.....+.   ..+++|+.|+++.|.++.
T Consensus       251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d  321 (362)
T 2ra8_A          251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD  321 (362)
T ss_dssp             CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred             CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence            3455555555555433222222   1356677777777766654333332   235667777777776653

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.61  E-value=9.3e-08  Score=96.67  Aligned_cols=144  Identities=19%  Similarity=0.302  Sum_probs=86.4

Q ss_pred             cccCCCCCCCEEECcCCccccCCCcCCCCCCCCCEEEccccccccccChhhh--hCCCCCCEEEeecc--ccceecCCCC
Q 048402           99 DQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHF--SNLTKLSWFRVGGN--KLTLEVRHDW  174 (677)
Q Consensus        99 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~l~~~~~--~~l~~L~~L~l~~n--~l~~~~~~~~  174 (677)
                      ..+..+++|+.|++++|.-. .++. +. +++|++|++..+.+...... .+  ..+++|+.|+|+.+  ...+.  ..+
T Consensus       166 ~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~-~l~~~~lp~L~~L~L~~~~~~~~~~--~~~  239 (362)
T 2ra8_A          166 PVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVE-DILGSDLPNLEKLVLYVGVEDYGFD--GDM  239 (362)
T ss_dssp             HHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHH-HHHHSBCTTCCEEEEECBCGGGTCC--SCG
T ss_pred             HHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHH-HHHHccCCCCcEEEEeccccccccc--hhH
Confidence            44556677777777766311 1222 33 67888888877776522221 23  26778888877532  11100  000


Q ss_pred             CCCcCccEEEeecccCCCCCChhc--cCCCCCCEEEccCCCCCCccchHHHh--ccCCccEEECCCccCccc-----cCC
Q 048402          175 IPPFQLVALGFHNCYVGSRFPQWL--HSQKHLQYLNLLNSGMSDLFPIRFLK--SAFQLKFLDLGLNQFHGQ-----ITD  245 (677)
Q Consensus       175 ~~~~~L~~L~l~~n~~~~~~~~~~--~~l~~L~~L~l~~n~i~~~~~~~~~~--~~~~L~~L~Ls~n~l~~~-----~~~  245 (677)
                      .                 .+...+  ..+++|++|++.+|.+.+..+..++.  .+++|++|+|+.|.+.+.     ...
T Consensus       240 ~-----------------~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~  302 (362)
T 2ra8_A          240 N-----------------VFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDH  302 (362)
T ss_dssp             G-----------------GTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTT
T ss_pred             H-----------------HHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhh
Confidence            0                 000111  35789999999999887644444432  467899999999988763     223


Q ss_pred             ccccccccEEEcccCCCCCC
Q 048402          246 LTKVTQLLFLSVHSNNMSGP  265 (677)
Q Consensus       246 ~~~~~~L~~L~l~~n~~~~~  265 (677)
                      +..+++|+.|++++|.++..
T Consensus       303 L~~l~~L~~L~L~~n~i~d~  322 (362)
T 2ra8_A          303 VDKIKHLKFINMKYNYLSDE  322 (362)
T ss_dssp             HHHHTTCSEEECCSBBCCHH
T ss_pred             cccCCcceEEECCCCcCCHH
Confidence            34568899999999987643

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.47  E-value=6.2e-08  Score=88.26  Aligned_cols=85  Identities=18%  Similarity=0.224  Sum_probs=38.8

Q ss_pred             CccEEEcccCcCccc----cccccCCCCCCCEEECcCCccccC----CCcCCCCCCCCCEEEc--cccccccc----cCh
Q 048402           82 ELESLDLRSSSISGH----LTDQLGQFKNLDNLDLANNSIVGP----IPQSLGHLSNLRVLQI--YNNKLNGT----LSE  147 (677)
Q Consensus        82 ~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L--~~n~i~~~----l~~  147 (677)
                      +|++|+|++|.+...    +.+.+...+.|++|+|++|.|...    +...+...++|++|++  ++|.+...    +..
T Consensus        66 ~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~  145 (185)
T 1io0_A           66 YVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIAN  145 (185)
T ss_dssp             SCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHH
T ss_pred             CcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHH
Confidence            444444444444321    222233334455555555554421    2233444455555555  45555421    111


Q ss_pred             hhhhCCCCCCEEEeeccccc
Q 048402          148 IHFSNLTKLSWFRVGGNKLT  167 (677)
Q Consensus       148 ~~~~~l~~L~~L~l~~n~l~  167 (677)
                       .+...+.|+.|++++|.+.
T Consensus       146 -~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          146 -MLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             -HHHHCSSCCEEECCCSSHH
T ss_pred             -HHHhCCCcCEEeccCCCCC
Confidence             3444456666666666554

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.41  E-value=6.1e-08  Score=88.34  Aligned_cols=113  Identities=18%  Similarity=0.166  Sum_probs=52.2

Q ss_pred             CCccEEEccCC-cccccCChhHhhccCCCCCcCeEecCCCCCcccC----CcccccCCCCceecccCcccccc----CCc
Q 048402          271 SNLVYLDLSNN-SFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEI----PDCWMSYQNLEILELSNNKFTGK----LPN  341 (677)
Q Consensus       271 ~~L~~L~l~~n-~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~----~~~  341 (677)
                      +.|++|++++| .+.......++..+...++|++|++++|.+....    ...+...++|++|+|++|.|.+.    +..
T Consensus        36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~  115 (185)
T 1io0_A           36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE  115 (185)
T ss_dssp             TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred             CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHH
Confidence            34555555555 5544333444444455556666666666554321    22233344555555555555432    223


Q ss_pred             CcCCCCCccEEEC--cCCccccc----CCccCcCCCCCCEEecCCCcc
Q 048402          342 SLGSLTSLIWLLL--GKNRLSGT----IPVSLKNCTALESLDVGENEF  383 (677)
Q Consensus       342 ~~~~l~~L~~L~l--~~n~~~~~----~~~~~~~l~~L~~L~l~~n~l  383 (677)
                      .+...++|++|++  ++|.+...    +...+...++|++|++++|.+
T Consensus       116 ~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i  163 (185)
T 1io0_A          116 ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  163 (185)
T ss_dssp             GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence            3344444555555  44444322    112223334444555444444

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.30  E-value=4.5e-07  Score=86.70  Aligned_cols=65  Identities=17%  Similarity=0.244  Sum_probs=31.1

Q ss_pred             hhccccEEEcccCcccc--cCCcccCCCCCCcEEeccCCcceeecccccccCC--CCcEEECCCCcccccC
Q 048402          488 ILNLVKETDVSRNNLTK--SIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMR--SLESIDFSVNQLSGEI  554 (677)
Q Consensus       488 ~l~~L~~L~Ls~n~l~~--~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~--~L~~L~Ls~N~l~~~~  554 (677)
                      .++.|+.|+|++|++++  .+|..+..+++|+.|+|++|++++.  +.+..+.  +|++|+|++|.+.+..
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~  236 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTF  236 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGC
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCcccc
Confidence            34555555555555554  2233444555555555555555532  1222222  5555555555554433

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.24  E-value=1.1e-07  Score=90.94  Aligned_cols=77  Identities=23%  Similarity=0.315  Sum_probs=55.2

Q ss_pred             CccEEEcccCcCcc--ccccccCCCCCCCEEECcCCccccCCCcCCCCCC--CCCEEEccccccccccCh------hhhh
Q 048402           82 ELESLDLRSSSISG--HLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLS--NLRVLQIYNNKLNGTLSE------IHFS  151 (677)
Q Consensus        82 ~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~L~~n~i~~~l~~------~~~~  151 (677)
                      +|++|+|++|.+++  .++..+..+++|++|+|++|.+++.  ..+..+.  +|++|+|++|.+.+.+|.      ..+.
T Consensus       171 ~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~  248 (267)
T 3rw6_A          171 ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRE  248 (267)
T ss_dssp             TCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHH
T ss_pred             CCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHHHHH
Confidence            78888888888876  3445666788888888888888754  3334333  888888888888765552      2467


Q ss_pred             CCCCCCEEE
Q 048402          152 NLTKLSWFR  160 (677)
Q Consensus       152 ~l~~L~~L~  160 (677)
                      .+++|+.||
T Consensus       249 ~~P~L~~LD  257 (267)
T 3rw6_A          249 RFPKLLRLD  257 (267)
T ss_dssp             HCTTCCEES
T ss_pred             HCcccCeEC
Confidence            888888876

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.02  E-value=1.9e-06  Score=76.11  Aligned_cols=85  Identities=11%  Similarity=0.099  Sum_probs=68.5

Q ss_pred             ccccEEEcccCcccccCCcccCCCCCCcEEeccCCc-ceeecccccccC----CCCcEEECCCCc-ccccCccccccCCC
Q 048402          490 NLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNS-FTGRIPESIGAM----RSLESIDFSVNQ-LSGEIPQSMSNLMS  563 (677)
Q Consensus       490 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~p~~~~~l----~~L~~L~Ls~N~-l~~~~p~~l~~l~~  563 (677)
                      ..|+.||++++.++..--..+.++++|++|+|++|. +++.--..+..+    ++|++|+|++|. ++..--..+..+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            358999999999887655667899999999999996 665433445554    479999999986 87655566888999


Q ss_pred             CCEEEcccCcc
Q 048402          564 LNHLNLSNNKL  574 (677)
Q Consensus       564 L~~L~ls~N~l  574 (677)
                      |++|++++|+-
T Consensus       141 L~~L~L~~c~~  151 (176)
T 3e4g_A          141 LKYLFLSDLPG  151 (176)
T ss_dssp             CCEEEEESCTT
T ss_pred             CCEEECCCCCC
Confidence            99999999863

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.95  E-value=5.2e-06  Score=73.34  Aligned_cols=85  Identities=19%  Similarity=0.194  Sum_probs=63.6

Q ss_pred             CCCCCEEecCCCCCCCccCchhhcCCCCCCEEEccCCc-CCcccchhhhhc----cccCcCCccEEEcccCc-Ccccccc
Q 048402           26 LTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVH-LSQEISEILNIF----SGCVSIELESLDLRSSS-ISGHLTD   99 (677)
Q Consensus        26 l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~l----~~~~~~~L~~L~L~~n~-l~~~~~~   99 (677)
                      -..|++||++ ++.++..--..+..+++|++|+|++|. +++..-..+..+    +     +|++|++++|. ++..--.
T Consensus        60 ~~~L~~LDLs-~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~-----~L~~L~Ls~C~~ITD~Gl~  133 (176)
T 3e4g_A           60 KYKIQAIDAT-DSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQK-----SMLEMEIISCGNVTDKGII  133 (176)
T ss_dssp             CCCEEEEEEE-SCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHH-----HCCEEEEESCTTCCHHHHH
T ss_pred             CceEeEEeCc-CCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccC-----CCCEEEcCCCCcCCHHHHH
Confidence            3568999999 556665545667889999999999984 776555555542    3     69999999984 7765455


Q ss_pred             ccCCCCCCCEEECcCCc
Q 048402          100 QLGQFKNLDNLDLANNS  116 (677)
Q Consensus       100 ~~~~l~~L~~L~L~~n~  116 (677)
                      .+.++++|++|++++|.
T Consensus       134 ~L~~~~~L~~L~L~~c~  150 (176)
T 3e4g_A          134 ALHHFRNLKYLFLSDLP  150 (176)
T ss_dssp             HGGGCTTCCEEEEESCT
T ss_pred             HHhcCCCCCEEECCCCC
Confidence            67788999999999885

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.49  E-value=0.00011  Score=61.77  Aligned_cols=60  Identities=15%  Similarity=0.213  Sum_probs=38.6

Q ss_pred             EEeccCCcce-eecccccccCCCCcEEECCCCcccccCccccccCCCCCEEEcccCcccccCC
Q 048402          518 SLNFSHNSFT-GRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLSNNKLTGKIP  579 (677)
Q Consensus       518 ~L~Ls~n~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p  579 (677)
                      .++.+++.++ ..+|..+.  ++|+.|+|++|+|+.+.++.|..+++|+.|+|++|++.|.+.
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~   72 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCR   72 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGG
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCc
Confidence            4555555554 23443333  357777777777776656667777778888888888776553

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.28  E-value=7.5e-05  Score=67.24  Aligned_cols=111  Identities=14%  Similarity=0.157  Sum_probs=59.0

Q ss_pred             CccEEEccCC-cccccCChhHhhccCCCCCcCeEecCCCCCcccCCc----ccccCCCCceecccCccccccC----CcC
Q 048402          272 NLVYLDLSNN-SFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPD----CWMSYQNLEILELSNNKFTGKL----PNS  342 (677)
Q Consensus       272 ~L~~L~l~~n-~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~----~~~  342 (677)
                      .|+.|++++| .+.......++..+...+.|+.|++++|.+......    .+..-+.|++|+|++|.|.+..    ..+
T Consensus        42 ~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~a  121 (197)
T 1pgv_A           42 DLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRS  121 (197)
T ss_dssp             SCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHH
T ss_pred             CccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHH
Confidence            4566666654 555444445666666667777777777776643222    2334456777777777666322    223


Q ss_pred             cCCCCCccEEECcCCc---ccc----cCCccCcCCCCCCEEecCCCc
Q 048402          343 LGSLTSLIWLLLGKNR---LSG----TIPVSLKNCTALESLDVGENE  382 (677)
Q Consensus       343 ~~~l~~L~~L~l~~n~---~~~----~~~~~~~~l~~L~~L~l~~n~  382 (677)
                      +..-+.|+.|+|++|.   +..    .+...+..-++|+.|+++.|.
T Consensus       122 L~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          122 TLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  168 (197)
T ss_dssp             TTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence            3444556666665432   221    112233444556666665544

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.26  E-value=0.00024  Score=63.97  Aligned_cols=120  Identities=9%  Similarity=0.069  Sum_probs=83.1

Q ss_pred             cccCCCCCCEEecCCCCCCCc----cCchhhcCCCCCCEEEccCCcCCcccchhhhhccccCcCCccEEEcccCcCccc-
Q 048402           22 ALGNLTSISRLDLSLNTGPEG----RIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVSIELESLDLRSSSISGH-   96 (677)
Q Consensus        22 ~~~~l~~L~~L~Ls~~~~~~~----~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~-   96 (677)
                      .+.+-+.|++|+|++++.+..    .+..++..-+.|+.|+|++|.+.+.....+...-.... .|++|+|++|.|... 
T Consensus        36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~-tL~~L~L~~N~Ig~~G  114 (197)
T 1pgv_A           36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSP-SLRVLNVESNFLTPEL  114 (197)
T ss_dssp             HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCS-SCCEEECCSSBCCHHH
T ss_pred             HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCC-ccCeEecCCCcCCHHH
Confidence            345678899999983335542    34567777889999999999998655444432211111 799999999999754 


Q ss_pred             ---cccccCCCCCCCEEECcCCc---ccc----CCCcCCCCCCCCCEEEccccccc
Q 048402           97 ---LTDQLGQFKNLDNLDLANNS---IVG----PIPQSLGHLSNLRVLQIYNNKLN  142 (677)
Q Consensus        97 ---~~~~~~~l~~L~~L~L~~n~---l~~----~~~~~~~~l~~L~~L~L~~n~i~  142 (677)
                         +.+++..-+.|++|+|++|.   +..    .+.+.+..-+.|+.|+++.|.+.
T Consensus       115 a~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g  170 (197)
T 1pgv_A          115 LARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME  170 (197)
T ss_dssp             HHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred             HHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence               45566777789999998753   331    13344566789999999887653

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.65  E-value=0.0028  Score=53.19  Aligned_cols=57  Identities=25%  Similarity=0.353  Sum_probs=47.5

Q ss_pred             cEEEcccCccc-ccCCcccCCCCCCcEEeccCCcceeecccccccCCCCcEEECCCCccc
Q 048402          493 KETDVSRNNLT-KSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLS  551 (677)
Q Consensus       493 ~~L~Ls~n~l~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~  551 (677)
                      ..++.++++++ ..+|..+.  .+|+.|+|++|+|+...++.|..+++|+.|+|++|.+.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            58899999997 34564433  46999999999999777778999999999999999875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	677
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-19
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	7e-15
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-14
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-08
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-08
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	9e-16
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-15
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-13
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	6e-12
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	5e-14
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-12
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	8e-11
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-10
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-04
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-12
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-10
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	8e-10
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-09
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-09
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	7e-09
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-09
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.002
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	9e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	4e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	5e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	9e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	5e-07
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	9e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	1e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	2e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	3e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.001
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.001
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.002
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	4e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	6e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.001
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.001
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	0.001

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 86.7 bits (213), Expect = 3e-19
 Identities = 63/285 (22%), Positives = 107/285 (37%), Gaps = 28/285 (9%)

Query: 324 NLEILELSNNKFTGK--LPNSLGSLTSLIWLLLGKN-RLSGTIPVSLKNCTALESLDVGE 380
            +  L+LS         +P+SL +L  L +L +G    L G IP ++   T L  L +  
Sbjct: 51  RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITH 110

Query: 381 NEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCI 440
               G IP +  +  + + +     N   G LP  +  L  L  +    N + G IP   
Sbjct: 111 TNVSGAIPDFLSQIKTLVTLDFSY-NALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY 169

Query: 441 NNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRN 500
            + + +  + + +R+                                  NL         
Sbjct: 170 GSFSKLFTSMTISRNRLTG-----------------------KIPPTFANLNLAFVDLSR 206

Query: 501 NLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSN 560
           N+ +     +              +        +G  ++L  +D   N++ G +PQ ++ 
Sbjct: 207 NMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQ 266

Query: 561 LMSLNHLNLSNNKLTGKIPSSTQLQSFDASSFTGND-LCGAPLPK 604
           L  L+ LN+S N L G+IP    LQ FD S++  N  LCG+PLP 
Sbjct: 267 LKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLPA 311

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 74.0 bits (180), Expect = 7e-15
 Identities = 54/292 (18%), Positives = 88/292 (30%), Gaps = 29/292 (9%)

Query: 99  DQLGQFKNLDNLDLANNSIVG--PIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKL 156
           D   Q   ++NLDL+  ++    PIP SL +L  L  L I              + LT+L
Sbjct: 44  DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQL 103

Query: 157 SWFRVGGNKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSD 216
            +  +    ++  +         LV L F    +    P  + S  +L  +         
Sbjct: 104 HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDG----- 158

Query: 217 LFPIRFLKSAFQLKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNNMSGPLPLISSNLVYL 276
                               N+  G I D       LF S+  +       +  +     
Sbjct: 159 --------------------NRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN 198

Query: 277 DLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFT 336
             +    S ++       +              +            +NL  L+L NN+  
Sbjct: 199 L-AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIY 257

Query: 337 GKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIP 388
           G LP  L  L  L  L +  N L G IP    N    +      N+ +   P
Sbjct: 258 GTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 72.1 bits (175), Expect = 3e-14
 Identities = 56/268 (20%), Positives = 94/268 (35%), Gaps = 6/268 (2%)

Query: 292 CYRINEPKSLIGLKLKDNSLQG--EIPDCWMSYQNLEILELSNN-KFTGKLPNSLGSLTS 348
           C    +   +  L L   +L     IP    +   L  L +       G +P ++  LT 
Sbjct: 43  CDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQ 102

Query: 349 LIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNF 408
           L +L +    +SG IP  L     L +LD   N   G +P         +V +    N  
Sbjct: 103 LHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI-SSLPNLVGITFDGNRI 161

Query: 409 HGPLPTRLCDLAFLQI-LDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGD 467
            G +P      + L   + ++ N L G IP    N+       S          L     
Sbjct: 162 SGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDK 221

Query: 468 VILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFT 527
                  +  S    +    +   +   D+  N +  ++P  +T LK   SLN S N+  
Sbjct: 222 NTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281

Query: 528 GRIPESIGAMRSLESIDFSVNQLSGEIP 555
           G IP+  G ++  +   ++ N+     P
Sbjct: 282 GEIPQ-GGNLQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 54.8 bits (130), Expect = 1e-08
 Identities = 56/243 (23%), Positives = 89/243 (36%), Gaps = 48/243 (19%)

Query: 247 TKVTQLLFLSVHSNNMSGPLPLISS--NLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGL 304
           T+  ++  L +   N+  P P+ SS  NL YL+        ++   +   I +   L  L
Sbjct: 47  TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106

Query: 305 KLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIP 364
            +   ++ G IPD     + L  L+ S N  +G LP S+ SL +L+ +    NR+SG IP
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166

Query: 365 VSLKNCTALESLDVGEN------------------------------------------- 381
            S  + + L +                                                 
Sbjct: 167 DSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKI 226

Query: 382 ---EFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPK 438
              +               +  L LR+N  +G LP  L  L FL  L+++ NNL G IP+
Sbjct: 227 HLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286

Query: 439 CIN 441
             N
Sbjct: 287 GGN 289

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 54.8 bits (130), Expect = 1e-08
 Identities = 49/269 (18%), Positives = 85/269 (31%), Gaps = 11/269 (4%)

Query: 2   IHLEYLSLRNNKLQGTID-SEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLR 60
             +  L L    L        +L NL  ++ L +       G IP ++A L  L  +   
Sbjct: 50  YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL--- 106

Query: 61  GVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGP 120
             +++                 L +LD   +++SG L   +    NL  +    N I G 
Sbjct: 107 --YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA 164

Query: 121 IPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQL 180
           IP S G  S L      +   N    +I  +       F      +            + 
Sbjct: 165 IPDSYGSFSKLFTSMTISR--NRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKN 222

Query: 181 VALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFH 240
                      +     +   K+L  L+L N+ +    P + L     L  L++  N   
Sbjct: 223 TQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLP-QGLTQLKFLHSLNVSFNNLC 281

Query: 241 GQITDLTKVTQLLFLSVHSNNM--SGPLP 267
           G+I     + +    +  +N      PLP
Sbjct: 282 GEIPQGGNLQRFDVSAYANNKCLCGSPLP 310

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 77.3 bits (189), Expect = 9e-16
 Identities = 63/382 (16%), Positives = 124/382 (32%), Gaps = 53/382 (13%)

Query: 202 KHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHG--QITDLTKVTQLLFLSVHS 259
             +  L     G+  +  + +L +   L  ++   NQ      + +LTK+  +L  +   
Sbjct: 44  DQVTTLQADRLGIKSIDGVEYLNN---LTQINFSNNQLTDITPLKNLTKLVDILMNNNQI 100

Query: 260 NNMSGPLPLISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCW 319
            +++    L +   + L  +  +    + +       E  S     +   S    +    
Sbjct: 101 ADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLS 160

Query: 320 MSYQNLEILELSNNKFTGKLPNSL---------GSLTSLIWLLLGKNRLSGTIPVSLKNC 370
              Q  ++  L+N     +L  S            LT+L  L+   N++S   P+     
Sbjct: 161 FGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPL--GIL 218

Query: 371 TALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADN 430
           T L+ L +  N+    I T      + +  L L +N      P  L  L  L  L L  N
Sbjct: 219 TNLDELSLNGNQLKD-IGTLAS--LTNLTDLDLANNQISNLAP--LSGLTKLTELKLGAN 273

Query: 431 NLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILN 490
            +    P         +  N                                      L 
Sbjct: 274 QISNISPLAGLTALTNLELNENQLEDISP--------------------------ISNLK 307

Query: 491 LVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQL 550
            +    +  NN++   P+   +L   Q L F++N  +     S+  + ++  +    NQ+
Sbjct: 308 NLTYLTLYFNNISDISPVS--SLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQI 363

Query: 551 SGEIPQSMSNLMSLNHLNLSNN 572
           S   P  ++NL  +  L L++ 
Sbjct: 364 SDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 75.0 bits (183), Expect = 5e-15
 Identities = 65/383 (16%), Positives = 122/383 (31%), Gaps = 56/383 (14%)

Query: 82  ELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKL 141
           E     L  ++++  ++        +  L      I       + +L+NL  +   NN+L
Sbjct: 23  EKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQL 78

Query: 142 NGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQ 201
                     NLTKL    +  N++        +     + L  +            +  
Sbjct: 79  TDI---TPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLN 135

Query: 202 KHLQYLNLLNSGMSDLFPIRFLK-------------SAFQLKFLDLGLNQFHGQITDLTK 248
           +     N ++   +        +             +           +     I+ L K
Sbjct: 136 RLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAK 195

Query: 249 VTQLLFLSVHSNNMSGPLPL-ISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLK 307
           +T L  L   +N +S   PL I +NL  L L+ N      +      +    +L  L L 
Sbjct: 196 LTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT------LASLTNLTDLDLA 249

Query: 308 DNSLQGEIPDCWMSYQNLEILELSNNKFTGKLP--------------------NSLGSLT 347
           +N +    P   ++   L  L+L  N+ +   P                    + + +L 
Sbjct: 250 NNQISNLAPLSGLT--KLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLK 307

Query: 348 SLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNN 407
           +L +L L  N +S   PVS  + T L+ L    N+    + +      + +  L    N 
Sbjct: 308 NLTYLTLYFNNISDISPVS--SLTKLQRLFFANNKVSD-VSSLAN--LTNINWLSAGHNQ 362

Query: 408 FHGPLPTRLCDLAFLQILDLADN 430
                P  L +L  +  L L D 
Sbjct: 363 ISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 69.6 bits (169), Expect = 3e-13
 Identities = 68/383 (17%), Positives = 125/383 (32%), Gaps = 48/383 (12%)

Query: 3   HLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLN----TGPEGRIPRSMASLCNLKSIN 58
            +  L      ++     + +  L ++++++ S N      P   + + +  L N   I 
Sbjct: 45  QVTTLQADRLGIK---SIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIA 101

Query: 59  LRGVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIV 118
                 +      L +F+  ++      +L + +     ++ +     L  L        
Sbjct: 102 DITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSF 161

Query: 119 GPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPF 178
           G     L  L+NL  L+  +   N        + LT L       N+++       +   
Sbjct: 162 GNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNL 221

Query: 179 QLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQ 238
             ++L  +      +    L S  +L  L+L N+ +S+L P+  L     L  L LG NQ
Sbjct: 222 DELSLNGNQL----KDIGTLASLTNLTDLDLANNQISNLAPLSGLTK---LTELKLGANQ 274

Query: 239 FHGQITDLTKVTQLLFLSVHSNNMSGPLPLISSNLVYLDLSNNSFSGSVSHYLCYRINEP 298
                               +            NL YL L  N+ S              
Sbjct: 275 ISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP---------- 324

Query: 299 KSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNR 358
                                 S   L+ L  +NNK +    +SL +LT++ WL  G N+
Sbjct: 325 --------------------VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQ 362

Query: 359 LSGTIPVSLKNCTALESLDVGEN 381
           +S   P  L N T +  L + + 
Sbjct: 363 ISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 65.4 bits (158), Expect = 6e-12
 Identities = 71/387 (18%), Positives = 134/387 (34%), Gaps = 27/387 (6%)

Query: 215 SDLFPIRFLKSAFQLKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNNMSGPLPLISSNLV 274
           + +F    L    +       +     Q TDL +VT L    +   ++ G   L  +NL 
Sbjct: 13  NQIFTDTALAEKMKTVLGKTNVTDTVSQ-TDLDQVTTLQADRLGIKSIDGVEYL--NNLT 69

Query: 275 YLDLSNNSFSGSV------SHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEIL 328
            ++ SNN  +                 N   + I       +L G             + 
Sbjct: 70  QINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLK 129

Query: 329 ELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIP 388
            L+N        N++  +++L  L   +    G     LK    L +L+  +        
Sbjct: 130 NLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSD 189

Query: 389 TWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNL--FGTIPKCINNITGM 446
                + + +  LI  +N      P  +     L  L L  N L   GT+    N     
Sbjct: 190 ISVLAKLTNLESLIATNNQISDITPLGILT--NLDELSLNGNQLKDIGTLASLTNLTDLD 247

Query: 447 VAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSI 506
           +A N  +         PL G   LTE    +   +      +  L   T++  N      
Sbjct: 248 LANNQISN------LAPLSGLTKLTE--LKLGANQISNISPLAGLTALTNLELNENQLED 299

Query: 507 PLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNH 566
              ++NLK    L    N+ +   P  + ++  L+ + F+ N++S     S++NL ++N 
Sbjct: 300 ISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINW 355

Query: 567 LNLSNNKLTGKIPSS--TQLQSFDASS 591
           L+  +N+++   P +  T++     + 
Sbjct: 356 LSAGHNQISDLTPLANLTRITQLGLND 382

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 71.2 bits (173), Expect = 5e-14
 Identities = 45/282 (15%), Positives = 95/282 (33%), Gaps = 30/282 (10%)

Query: 323 QNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENE 382
            +  +L+L NNK T        +L +L  L+L  N++S   P +      LE L + +N+
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 383 FVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINN 442
                     E+  + +  +    N    +   + +     I+     N   +       
Sbjct: 91  L-----KELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGA 145

Query: 443 ITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNL 502
             GM   +    +      +P                        +   + E  +  N +
Sbjct: 146 FQGMKKLSYIRIADTNITTIP----------------------QGLPPSLTELHLDGNKI 183

Query: 503 TKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLM 562
           TK     +  L     L  S NS +     S+     L  +  + N+L  ++P  +++  
Sbjct: 184 TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHK 242

Query: 563 SLNHLNLSNNKLTGKIPSSTQLQSFDA--SSFTGNDLCGAPL 602
            +  + L NN ++    +      ++   +S++G  L   P+
Sbjct: 243 YIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 284

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 66.2 bits (160), Expect = 2e-12
 Identities = 49/315 (15%), Positives = 96/315 (30%), Gaps = 45/315 (14%)

Query: 52  CNLKSINLRGVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLD 111
           C+L+ +    + L +   ++          +   LDL+++ I+          KNL  L 
Sbjct: 10  CHLRVVQCSDLGLEKVPKDL--------PPDTALLDLQNNKITEIKDGDFKNLKNLHTLI 61

Query: 112 LANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVR 171
           L NN I    P +   L  L  L +  N+L   L E     L +L        K+   V 
Sbjct: 62  LINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMPKTLQELRVHENEITKVRKSV- 119

Query: 172 HDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKF 231
            + +    +V LG +               K L Y+ + ++ ++ +              
Sbjct: 120 FNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP--------- 170

Query: 232 LDLGLNQFHGQITDLTKVTQLLFLSVHSNNMSGPLPLISSNLVYLDLSNNSFSGSVSHYL 291
                               L  L +  N ++         L  L     SF+   +   
Sbjct: 171 ------------------PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAV-- 210

Query: 292 CYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTG------KLPNSLGS 345
                     +     +N+   ++P     ++ ++++ L NN  +         P     
Sbjct: 211 DNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTK 270

Query: 346 LTSLIWLLLGKNRLS 360
             S   + L  N + 
Sbjct: 271 KASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 61.6 bits (148), Expect = 8e-11
 Identities = 40/232 (17%), Positives = 79/232 (34%), Gaps = 9/232 (3%)

Query: 202 KHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQITD-LTKVTQLLFLSVHSN 260
                L+L N+ ++++      K+   L  L L  N+           + +L  L +  N
Sbjct: 31  PDTALLDLQNNKITEIKD-GDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 89

Query: 261 NMSGPLPLISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWM 320
            +      +   L  L +  N  +        +       ++ L        G     + 
Sbjct: 90  QLKELPEKMPKTLQELRVHENEITKV--RKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 147

Query: 321 SYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGE 380
             + L  + +++   T  +P  L    SL  L L  N+++     SLK    L  L +  
Sbjct: 148 GMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSF 204

Query: 381 NEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNL 432
           N                  + +  +NN    +P  L D  ++Q++ L +NN+
Sbjct: 205 NSISAVDNGSLANTPHLRELHL--NNNKLVKVPGGLADHKYIQVVYLHNNNI 254

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 60.8 bits (146), Expect = 1e-10
 Identities = 46/279 (16%), Positives = 91/279 (32%), Gaps = 28/279 (10%)

Query: 3   HLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGV 62
               L L+NNK+   I      NL ++  L L  N       P + A L  L+ + L   
Sbjct: 32  DTALLDLQNNKITE-IKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKN 89

Query: 63  HLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIP 122
            L +   ++          EL   +   + +   + + L Q   ++ L        G   
Sbjct: 90  QLKELPEKMPKTLQ-----ELRVHENEITKVRKSVFNGLNQMIVVE-LGTNPLKSSGIEN 143

Query: 123 QSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQLVA 182
            +   +  L  ++I +      ++ I       L+   + GNK+T            L  
Sbjct: 144 GAFQGMKKLSYIRIADTN----ITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAK 199

Query: 183 LGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQ 242
           LG     + +     L +  HL+ L+L N+ +  +           ++ + L  N     
Sbjct: 200 LGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLA--DHKYIQVVYLHNNN---- 253

Query: 243 ITDLTKVTQLLFLSVHSNNMSGPLPLISSNLVYLDLSNN 281
              ++ +    F     N          ++   + L +N
Sbjct: 254 ---ISAIGSNDFCPPGYN-------TKKASYSGVSLFSN 282

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.2 bits (95), Expect = 3e-04
 Identities = 18/93 (19%), Positives = 33/93 (35%)

Query: 486 DEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDF 545
            ++       D+  N +T+    +  NLK   +L   +N  +   P +   +  LE +  
Sbjct: 27  KDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 86

Query: 546 SVNQLSGEIPQSMSNLMSLNHLNLSNNKLTGKI 578
           S NQL     +    L  L        K+   +
Sbjct: 87  SKNQLKELPEKMPKTLQELRVHENEITKVRKSV 119

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.0 bits (159), Expect = 2e-12
 Identities = 46/259 (17%), Positives = 80/259 (30%), Gaps = 7/259 (2%)

Query: 104 FKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGG 163
                 + L  N I      S     NL +L +++N L    +                 
Sbjct: 31  PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90

Query: 164 NKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFL 223
            +L       +    +L  L    C +    P        LQYL L ++ +  L      
Sbjct: 91  AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD-DTF 149

Query: 224 KSAFQLKFLDLGLNQFHGQITD-LTKVTQLLFLSVHSNNMSGPLPLISSNLVYLDLSNNS 282
           +    L  L L  N+           +  L  L +H N ++   P    +L  L      
Sbjct: 150 RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLF 209

Query: 283 FSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNS 342
            + ++S      +   ++L  L+L DN    +     + +  L+    S+++    LP  
Sbjct: 210 AN-NLSALPTEALAPLRALQYLRLNDNPWVCDCRARPL-WAWLQKFRGSSSEVPCSLPQR 267

Query: 343 LGSLTSLIWLLLGKNRLSG 361
           L          L  N L G
Sbjct: 268 LAGRD---LKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.8 bits (143), Expect = 2e-10
 Identities = 43/259 (16%), Positives = 80/259 (30%), Gaps = 13/259 (5%)

Query: 83  LESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLN 142
            + + L  + IS          +NL  L L +N +      +   L+ L  L + +N   
Sbjct: 34  SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93

Query: 143 GTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQK 202
            ++    F  L +L    +    L       +     L  L   +  + +          
Sbjct: 94  RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLG 153

Query: 203 HLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNNM 262
           +L +L L  + +S + P R  +    L  L L  N+         +    L       N 
Sbjct: 154 NLTHLFLHGNRISSV-PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN 212

Query: 263 SGPLPLISS----NLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDC 318
              LP  +      L YL L++N +        C        L   +   + +   +P  
Sbjct: 213 LSALPTEALAPLRALQYLRLNDNPWVCD-----CRARPLWAWLQKFRGSSSEVPCSLPQ- 266

Query: 319 WMSYQNLEILELSNNKFTG 337
                  ++  L+ N   G
Sbjct: 267 --RLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.9 bits (138), Expect = 8e-10
 Identities = 36/255 (14%), Positives = 73/255 (28%), Gaps = 5/255 (1%)

Query: 347 TSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSN 406
            +   + L  NR+S     S + C  L  L +  N                  + +  + 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 407 NFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDG 466
                 P     L  L  L L    L    P     +  +        + Q         
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151

Query: 467 DVILTEKASVVSEGEAIEYDEILNL--VKETDVSRNNLTKSIPLEMTNLKATQSLNFSHN 524
              LT      +   ++       L  +    + +N +    P    +L    +L    N
Sbjct: 152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211

Query: 525 SFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLSNNKLTGKIPSSTQL 584
           + +    E++  +R+L+ +  + N    +   +      L     S++++   +P     
Sbjct: 212 NLSALPTEALAPLRALQYLRLNDNPWVCDCR-ARPLWAWLQKFRGSSSEVPCSLPQRLAG 270

Query: 585 QSFDASSFTGNDLCG 599
           +         NDL G
Sbjct: 271 RDL--KRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.1 bits (136), Expect = 1e-09
 Identities = 46/255 (18%), Positives = 83/255 (32%), Gaps = 6/255 (2%)

Query: 324 NLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEF 383
             + + L  N+ +     S  +  +L  L L  N L+     +      LE LD+ +N  
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 384 VGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNI 443
           + ++   T     R+  L L         P     LA LQ L L DN L         ++
Sbjct: 93  LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDL 152

Query: 444 TGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKE--TDVSRNN 501
             +                   G   L       +    +      +L +     +  NN
Sbjct: 153 GNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN 212

Query: 502 LTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNL 561
           L+      +  L+A Q L  + N +      +      L+    S +++   +PQ ++  
Sbjct: 213 LSALPTEALAPLRALQYLRLNDNPWVC-DCRARPLWAWLQKFRGSSSEVPCSLPQRLAG- 270

Query: 562 MSLNHLNLSNNKLTG 576
              +   L+ N L G
Sbjct: 271 --RDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.4 bits (134), Expect = 3e-09
 Identities = 38/283 (13%), Positives = 83/283 (29%), Gaps = 32/283 (11%)

Query: 3   HLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGV 62
             + + L  N++   + + +     +     L++       + R  A+     ++  +  
Sbjct: 33  ASQRIFLHGNRISH-VPAASFRACRN-----LTILWLHSNVLARIDAAAFTGLALLEQLD 86

Query: 63  HLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIP 122
                    ++  +      L +L L    +             L  L L +N++     
Sbjct: 87  LSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD 146

Query: 123 QSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQLVA 182
            +   L NL  L ++ N+++       F  L  L    +  N++     H +    +L+ 
Sbjct: 147 DTFRDLGNLTHLFLHGNRISSVPERA-FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMT 205

Query: 183 LGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQ 242
           L      + +   + L   + LQYL L +                         N +   
Sbjct: 206 LYLFANNLSALPTEALAPLRALQYLRLND-------------------------NPWVCD 240

Query: 243 ITDLTKVTQLLFLSVHSNNMSGPLPLISSNLVYLDLSNNSFSG 285
                    L      S+ +   LP   +      L+ N   G
Sbjct: 241 CRARPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.2 bits (131), Expect = 7e-09
 Identities = 38/167 (22%), Positives = 62/167 (37%), Gaps = 6/167 (3%)

Query: 272 NLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELS 331
            L  L L                      L  L L+DN+LQ    D +    NL  L L 
Sbjct: 106 RLHTLHLDRCGLQELGPGLFRGLAA----LQYLYLQDNALQALPDDTFRDLGNLTHLFLH 161

Query: 332 NNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWT 391
            N+ +     +   L SL  LLL +NR++   P + ++   L +L +  N     +PT  
Sbjct: 162 GNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL-SALPTEA 220

Query: 392 GERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPK 438
                 +  L L  N +      R    A+LQ    + + +  ++P+
Sbjct: 221 LAPLRALQYLRLNDNPWVCDCRARPL-WAWLQKFRGSSSEVPCSLPQ 266

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.7 bits (135), Expect = 2e-09
 Identities = 51/265 (19%), Positives = 91/265 (34%), Gaps = 18/265 (6%)

Query: 31  RLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVSIELESLDLRS 90
            LDL+          R ++    + +       + Q ++E  + F       ++ +DL +
Sbjct: 4   TLDLTGKNLHPDVTGRLLSQ--GVIAFRCPRSFMDQPLAEHFSPFR------VQHMDLSN 55

Query: 91  SSISG-HLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVL-QIYNNKLNGTLSEI 148
           S I    L   L Q   L NL L    +  PI  +L   SNL  L     +  +    + 
Sbjct: 56  SVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQT 115

Query: 149 HFSNLTKLSWFRVGGNKLTL------EVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQK 202
             S+ ++L    +              V H      QL   G+      S     +    
Sbjct: 116 LLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCP 175

Query: 203 HLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHG--QITDLTKVTQLLFLSVHSN 260
           +L +L+L +S M      +       L+ L L          + +L ++  L  L V   
Sbjct: 176 NLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 235

Query: 261 NMSGPLPLISSNLVYLDLSNNSFSG 285
              G L L+   L +L ++ + F+ 
Sbjct: 236 VPDGTLQLLKEALPHLQINCSHFTT 260

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.4 bits (98), Expect = 1e-04
 Identities = 39/287 (13%), Positives = 83/287 (28%), Gaps = 22/287 (7%)

Query: 85  SLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGT 144
           +LDL   ++   +T +L   + +       + +  P+ +       ++ + + N+ +  +
Sbjct: 4   TLDLTGKNLHPDVTGRLLS-QGVIAFRCPRSFMDQPLAEHFSPF-RVQHMDLSNSVIEVS 61

Query: 145 LSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHL 204
                 S  +KL    + G +L+  + +       LV L    C  G             
Sbjct: 62  TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCS-GFSEFALQTLLSSC 120

Query: 205 QYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNNMSG 264
             L+ LN      F  + ++ A       +      G                  N    
Sbjct: 121 SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG---------------YRKNLQKS 165

Query: 265 PLPLISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKD-NSLQGEIPDCWMSYQ 323
            L  +      L   + S S  + +       +   L  L L     +  E         
Sbjct: 166 DLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIP 225

Query: 324 NLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNC 370
            L+ L++      G L     +L  L    +  +  +     ++ N 
Sbjct: 226 TLKTLQVFGIVPDGTLQLLKEALPHLQ---INCSHFTTIARPTIGNK 269

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (87), Expect = 0.002
 Identities = 11/82 (13%), Positives = 32/82 (39%), Gaps = 2/82 (2%)

Query: 488 ILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGR-IPESIGAMRSLESIDFS 546
           +   V      R+ + + +    +  +  Q ++ S++      +   +     L+++   
Sbjct: 21  LSQGVIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE 79

Query: 547 VNQLSGEIPQSMSNLMSLNHLN 568
             +LS  I  +++   +L  LN
Sbjct: 80  GLRLSDPIVNTLAKNSNLVRLN 101

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 50.6 bits (119), Expect = 3e-07
 Identities = 54/315 (17%), Positives = 99/315 (31%), Gaps = 22/315 (6%)

Query: 78  CVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLS--NLRVLQ 135
           C+  +   L+L +  +S  L +      +L++L  + NS+   +P+    L    +    
Sbjct: 35  CLDRQAHELELNNLGLS-SLPELPP---HLESLVASCNSLT-ELPELPQSLKSLLVDNNN 89

Query: 136 IYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQLVALGFHNCYVGSRFP 195
           +        L E    +  +L       N   L++        + +     +    +   
Sbjct: 90  LKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGN 149

Query: 196 QWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQITDLTKVTQLLFL 255
             L     LQ L  L +  +D   ++ L          +  N    ++ +L  +  L  +
Sbjct: 150 NQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTI 209

Query: 256 SVHSNNMSGPLPLISSNLVYLDLSNNSFS-------GSVSHYLCYRINEPKSLIGLKLKD 308
              +N +     L  S        N            +         +    L       
Sbjct: 210 YADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYL 269

Query: 309 NSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLK 368
           N+   EI        +LE L +SNNK   +LP     L  LI      N L+  +P   +
Sbjct: 270 NASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLERLI---ASFNHLA-EVPELPQ 324

Query: 369 NCTALESLDVGENEF 383
           N   L+ L V  N  
Sbjct: 325 N---LKQLHVEYNPL 336

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 42.9 bits (99), Expect = 9e-05
 Identities = 23/92 (25%), Positives = 36/92 (39%), Gaps = 13/92 (14%)

Query: 258 HSNNMSGPLPLISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPD 317
            S+N    L  +  +L  L++SNN      +         P  L  L    N L  E+P+
Sbjct: 271 ASSNEIRSLCDLPPSLEELNVSNNKLIELPA--------LPPRLERLIASFNHLA-EVPE 321

Query: 318 CWMSYQNLEILELSNNKFTGKLPNSLGSLTSL 349
                QNL+ L +  N    + P+   S+  L
Sbjct: 322 ---LPQNLKQLHVEYNPLR-EFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 42.1 bits (97), Expect = 2e-04
 Identities = 55/329 (16%), Positives = 97/329 (29%), Gaps = 20/329 (6%)

Query: 250 TQLLFLSVHSNNMSGPLPLISSNLVYLDLSNNSFSG--SVSHYLCYRINEPKSLIGLKLK 307
            Q   L +++  +S  LP +  +L  L  S NS +    +   L   + +  +L  L   
Sbjct: 38  RQAHELELNNLGLSS-LPELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDL 96

Query: 308 DNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWL-----LLGKNRLSGT 362
              L+          +  E+   S  K      NSL  L  L                  
Sbjct: 97  PPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELP 156

Query: 363 IPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFL 422
              +L   TA+ + +    +      +         ++  L        L T   D   L
Sbjct: 157 ELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLL 216

Query: 423 QILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEA 482
           + L     +L     +            S T             ++         S  E 
Sbjct: 217 KTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEI 276

Query: 483 IEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLES 542
               ++   ++E +VS N L   +P     L   + L  S N     +PE      +L+ 
Sbjct: 277 RSLCDLPPSLEELNVSNNKLI-ELPALPPRL---ERLIASFNHLA-EVPELPQ---NLKQ 328

Query: 543 IDFSVNQLSGEIPQSMSNLMSLNHLNLSN 571
           +    N L  E P       S+  L +++
Sbjct: 329 LHVEYNPLR-EFPDIPE---SVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.0 bits (94), Expect = 4e-04
 Identities = 47/310 (15%), Positives = 78/310 (25%), Gaps = 24/310 (7%)

Query: 304 LKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSL------------IW 351
           L+L +  L   +P+      +LE L  S N  T +LP    SL SL            + 
Sbjct: 43  LELNNLGLS-SLPELP---PHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLP 97

Query: 352 LLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGP 411
            LL    +S      L        L + + +                +            
Sbjct: 98  PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPE 157

Query: 412 LPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILT 471
           L       A     +         +          +        +  +L      + +L 
Sbjct: 158 LQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLK 217

Query: 472 EKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIP 531
               +    EA+   +                       + L       +  N+ +  I 
Sbjct: 218 TLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIR 277

Query: 532 ESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLSNNKLTGKIPSSTQLQSFDASS 591
                  SLE ++ S N+L  E+P     L     L  S N L         L+      
Sbjct: 278 SLCDLPPSLEELNVSNNKLI-ELPALPPRL---ERLIASFNHLAEVPELPQNLKQLHVE- 332

Query: 592 FTGNDLCGAP 601
              N L   P
Sbjct: 333 --YNPLREFP 340

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.3 bits (116), Expect = 5e-07
 Identities = 28/183 (15%), Positives = 47/183 (25%), Gaps = 8/183 (4%)

Query: 104 FKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGG 163
            K+   L L+ N +      +L   + L  L +   +L     +     L  L       
Sbjct: 30  PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQL 89

Query: 164 NKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFL 223
             L L  +         V+                  Q+     N L +    L      
Sbjct: 90  QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149

Query: 224 KSAFQLKFLDLGLNQFHGQITD-LTKVTQLLFLSVHSNNMSGPLPLI--SSNLVYLDLSN 280
                 + L L  N         L  +  L  L +  N++         S  L +  L  
Sbjct: 150 L-----EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHG 204

Query: 281 NSF 283
           N +
Sbjct: 205 NPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (90), Expect = 9e-04
 Identities = 11/65 (16%), Positives = 24/65 (36%), Gaps = 3/65 (4%)

Query: 509 EMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLN 568
           E++ + +   +N    + T  +P  +   +    +  S N L      ++     L  LN
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 569 LSNNK 573
           L   +
Sbjct: 62  LDRAE 66

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (90), Expect = 0.001
 Identities = 24/179 (13%), Positives = 39/179 (21%), Gaps = 5/179 (2%)

Query: 82  ELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKL 141
           +   L L  + +       L  +  L  L+L    +             L VL   +   
Sbjct: 32  DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ-----VDGTLPVLGTLDLSH 86

Query: 142 NGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQ 201
           N   S                       +    +     +   +         P  L + 
Sbjct: 87  NQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146

Query: 202 KHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQITDLTKVTQLLFLSVHSN 260
                   L +      P   L     L  L L  N  +           L F  +H N
Sbjct: 147 TPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.4 bits (118), Expect = 5e-07
 Identities = 17/139 (12%), Positives = 39/139 (28%), Gaps = 10/139 (7%)

Query: 80  SIELESLDLRSSSIS-GHLTDQLGQFKNLDNLDLANNSI----VGPIPQSLGHLSNLRVL 134
           S++++SLD++   +S     + L   +    + L +  +       I  +L     L  L
Sbjct: 1   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 135 QIYNNKLNGT----LSEIHFSNLTKLSWFRVGG-NKLTLEVRHDWIPPFQLVALGFHNCY 189
            + +N+L       + +   +   K+    +                   L  L   +  
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 120

Query: 190 VGSRFPQWLHSQKHLQYLN 208
                   L          
Sbjct: 121 DNLLGDAGLQLLCEGLLDP 139

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (109), Expect = 5e-06
 Identities = 49/468 (10%), Positives = 103/468 (22%), Gaps = 46/468 (9%)

Query: 2   IHLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNT-GPEG--RIPRSMASLCNLKSIN 58
           + ++ L ++  +L     +E L  L     + L            I  ++     L  +N
Sbjct: 2   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 59  LRGVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLT-DQLGQFKNLDNLDLANNSI 117
           LR   L       +       S +++ L L++  ++G          + L  L   + S 
Sbjct: 62  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 121

Query: 118 VGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPP 177
                  L  L    +      +          +   +     +       E+       
Sbjct: 122 NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 181

Query: 178 FQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLN 237
            +            S         +     +     +  +   +       L    LG  
Sbjct: 182 NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 241

Query: 238 QFHGQITDLTKVTQLLFLSVHSNNMSGPLPLISSNLVYLDLSNNSFSGSVSHYLCYRINE 297
                   L   +  L                    V     +        + L      
Sbjct: 242 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR 301

Query: 298 PKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPN---------------- 341
                 L+         +  C  +            +    L                  
Sbjct: 302 LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELC 361

Query: 342 --SLGSLTSLIWLLLGKNRLSGT----IPVSLKNCTALESLDVGENEFVGNIPTWTGERF 395
                  + L  L L    +S +    +  +L    +L  LD+  N          G+  
Sbjct: 362 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL--------GDAG 413

Query: 396 SRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNI 443
              +V  +R                 L+ L L D      +   +  +
Sbjct: 414 ILQLVESVRQPGCL------------LEQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (108), Expect = 8e-06
 Identities = 13/70 (18%), Positives = 26/70 (37%), Gaps = 5/70 (7%)

Query: 517 QSLNFSHNSFT-GRIPESIGAMRSLESIDFSVNQLSGE----IPQSMSNLMSLNHLNLSN 571
           QSL+      +  R  E +  ++  + +      L+      I  ++    +L  LNL +
Sbjct: 5   QSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRS 64

Query: 572 NKLTGKIPSS 581
           N+L       
Sbjct: 65  NELGDVGVHC 74

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (103), Expect = 3e-05
 Identities = 12/93 (12%), Positives = 30/93 (32%), Gaps = 6/93 (6%)

Query: 489 LNLVKETDVSRNNLTKSIPLEM-TNLKATQSLNFSHNSFTGR----IPESIGAMRSLESI 543
           L++ +  D+    L+ +   E+   L+  Q +       T      I  ++    +L  +
Sbjct: 2   LDI-QSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 544 DFSVNQLSGEIPQSMSNLMSLNHLNLSNNKLTG 576
           +   N+L       +   +      +    L  
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (102), Expect = 4e-05
 Identities = 50/465 (10%), Positives = 110/465 (23%), Gaps = 35/465 (7%)

Query: 130 NLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQLVALGFHNCY 189
           +++ L I   +L+          L +    R+    LT                      
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEAR------------------- 43

Query: 190 VGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAF----QLKFLDLGLNQFHGQITD 245
                   L     L  LNL ++ + D+     L+       +++ L L      G    
Sbjct: 44  -CKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCG 102

Query: 246 LTKVTQLLFLSVHSNNMSGPLPLISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLK 305
           +   T     ++   ++S  L   +   +  +   +         L Y      S   L 
Sbjct: 103 VLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA 162

Query: 306 LKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPV 365
               +          +    E       +     P  L +L      +   N       V
Sbjct: 163 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIV 222

Query: 366 SLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQIL 425
           + K         +G N+                   +     +   +  + C      + 
Sbjct: 223 ASKASLREL--ALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLR 280

Query: 426 DLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEY 485
                         + +    +   +      Q   L +          S  S   A   
Sbjct: 281 AKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNR 340

Query: 486 DEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGR----IPESIGAMRSLE 541
             +   +    +    + +            + L  +    +      +  ++ A  SL 
Sbjct: 341 FLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLR 400

Query: 542 SIDFSVNQLSGEIPQSMSNLM-----SLNHLNLSNNKLTGKIPSS 581
            +D S N L       +   +      L  L L +   + ++   
Sbjct: 401 ELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDR 445

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (96), Expect = 2e-04
 Identities = 15/96 (15%), Positives = 28/96 (29%), Gaps = 7/96 (7%)

Query: 270 SSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGE----IPDCWMSYQNL 325
           S ++  LD+     S +    L   +   +    ++L D  L       I         L
Sbjct: 1   SLDIQSLDIQCEELSDARWAELLPLL---QQCQVVRLDDCGLTEARCKDISSALRVNPAL 57

Query: 326 EILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSG 361
             L L +N+      + +          + K  L  
Sbjct: 58  AELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (88), Expect = 0.002
 Identities = 48/475 (10%), Positives = 115/475 (24%), Gaps = 39/475 (8%)

Query: 106 NLDNLDLANNSIV-GPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGN 164
           ++ +LD+    +      + L  L   +V+++ +  L     +   S L           
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNP------- 55

Query: 165 KLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWL-----HSQKHLQYLNLLNSGMSDLFP 219
                          L  L   +  +G      +          +Q L+L N  ++    
Sbjct: 56  --------------ALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGC 101

Query: 220 IRFLKSAFQLKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNNMSGPLPLISSNLVYLDLS 279
                +   L  L       +       ++     L          L   S +    +  
Sbjct: 102 GVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 161

Query: 280 NNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKL 339
            +              N   +  G+++    L+               +   N +     
Sbjct: 162 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCG- 220

Query: 340 PNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMV 399
             +  +    + L   K    G   +          L        G      G+    + 
Sbjct: 221 IVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLR 280

Query: 400 VLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQY 459
                                 L    L       ++     + T    ++  +  +Q  
Sbjct: 281 AKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNR 340

Query: 460 LPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLT----KSIPLEMTNLKA 515
             L L       E A V    + +      ++++   ++  +++     S+   +    +
Sbjct: 341 FLLELQISNNRLEDAGVRELCQGLGQPG--SVLRVLWLADCDVSDSSCSSLAATLLANHS 398

Query: 516 TQSLNFSHNSFTGRIPESIGA-----MRSLESIDFSVNQLSGEIPQSMSNLMSLN 565
            + L+ S+N         +          LE +       S E+   +  L    
Sbjct: 399 LRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDK 453

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 48.3 bits (113), Expect = 5e-07
 Identities = 38/175 (21%), Positives = 64/175 (36%), Gaps = 8/175 (4%)

Query: 258 HSNNMSGPLPLISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPD 317
               +      I  +   L L++N                   L+ L+LK N L G  P+
Sbjct: 16  TGRGLKEIPRDIPLHTTELLLNDNEL---GRISSDGLFGRLPHLVKLELKRNQLTGIEPN 72

Query: 318 CWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLD 377
            +    +++ L+L  NK           L  L  L L  N++S  +P S ++  +L SL+
Sbjct: 73  AFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLN 132

Query: 378 VGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNL 432
           +  N F  N        + R     L         P+++ D   +QI DL  +  
Sbjct: 133 LASNPFNCNCHLAWFAEWLRK--KSLNGGAARCGAPSKVRD---VQIKDLPHSEF 182

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 47.3 bits (111), Expect = 2e-06
 Identities = 31/212 (14%), Positives = 74/212 (34%), Gaps = 18/212 (8%)

Query: 82  ELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKL 141
               +    S+++  +T        +  L      +     + + +L+NL  L++ +N++
Sbjct: 20  NAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQI 75

Query: 142 NGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQ 201
                  + + +T+L         ++       I    L +    +    +         
Sbjct: 76  TDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLY 135

Query: 202 KHLQYL------------NLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQITDLTKV 249
             L  +              L+ G + +  +  L +  +L  L    N+    I+ L  +
Sbjct: 136 LDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISD-ISPLASL 194

Query: 250 TQLLFLSVHSNNMSGPLPLIS-SNLVYLDLSN 280
             L+ + + +N +S   PL + SNL  + L+N
Sbjct: 195 PNLIEVHLKNNQISDVSPLANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 44.3 bits (103), Expect = 2e-05
 Identities = 35/230 (15%), Positives = 65/230 (28%), Gaps = 20/230 (8%)

Query: 103 QFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVG 162
              N   +    +++   + Q+   L  +  L  +   +  T+  +    L  L    + 
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVT-TIEGV--QYLNNLIGLELK 71

Query: 163 GNKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRF 222
            N++T       +     + L  +     S        +        +            
Sbjct: 72  DNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVT-------P 124

Query: 223 LKSAFQLKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNNMSGPLPLISSNLVYLDLSNNS 282
           L     L+ L L LNQ                   ++           S L  L   +N 
Sbjct: 125 LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNK 184

Query: 283 FSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSN 332
            S          +    +LI + LK+N +    P    S  NL I+ L+N
Sbjct: 185 ISDISP------LASLPNLIEVHLKNNQISDVSPLANTS--NLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.9 bits (97), Expect = 9e-05
 Identities = 30/191 (15%), Positives = 62/191 (32%), Gaps = 21/191 (10%)

Query: 202 KHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNN 261
             +  L+   +G++ +  +++L +   L  L+L  NQ                    +  
Sbjct: 41  DGITTLSAFGTGVTTIEGVQYLNN---LIGLELKDNQITDLAPLKNLTKITELELSGNPL 97

Query: 262 MSGPLPLISSNLVYLDLSNNSFSGSVS--------------HYLCYRINEPKSLIGLKLK 307
            +        ++  LDL++   +                  + +              L 
Sbjct: 98  KNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLS 157

Query: 308 DNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSL 367
             + Q        +   L  L+  +NK +   P  L SL +LI + L  N++S   P  L
Sbjct: 158 IGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--L 213

Query: 368 KNCTALESLDV 378
            N + L  + +
Sbjct: 214 ANTSNLFIVTL 224

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.6 bits (96), Expect = 1e-04
 Identities = 32/228 (14%), Positives = 73/228 (32%), Gaps = 19/228 (8%)

Query: 345 SLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTG-ERFSRMVVLIL 403
           +L + I +  GK+ ++    V+  +   + +L          + T  G +  + ++ L L
Sbjct: 17  ALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGT----GVTTIEGVQYLNNLIGLEL 70

Query: 404 RSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLP 463
           + N      P +         L          I    +  T  + +   T  +       
Sbjct: 71  KDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSN 130

Query: 464 LDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSH 523
           L    +   + + +S    +   + L++          L     L               
Sbjct: 131 LQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLK--------ADD 182

Query: 524 NSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLSN 571
           N  +   P  + ++ +L  +    NQ+S   P  ++N  +L  + L+N
Sbjct: 183 NKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 45.3 bits (105), Expect = 2e-05
 Identities = 37/321 (11%), Positives = 86/321 (26%), Gaps = 27/321 (8%)

Query: 80  SIELESLDLRSSSISG--HLTDQLGQFKNLDNLDLANNSI----VGPIPQSLGHLSNLRV 133
           SIE +SL L + +      +   L +  ++  + L+ N+I       + +++    +L +
Sbjct: 4   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 63

Query: 134 LQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQLVALGFHNCYVGSR 193
            +  +        EI  +         +    L     H                 +   
Sbjct: 64  AEFSDIFTGRVKDEIPEA------LRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFL 117

Query: 194 FPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQITDLTKVTQLL 253
                    +L    L     + +       +  +       L         L   +   
Sbjct: 118 SKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKE 177

Query: 254 FLSVHSNNMSGPLPLISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQG 313
           +     ++      L +  +V   +        +   L Y        +      +    
Sbjct: 178 WAKTFQSHR----LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSS 233

Query: 314 EIPDCWMSYQNLEILELSNNKFTGKLPNSLG------SLTSLIWLLLGKNRLSGTIPVSL 367
            +     S+ NL  L L++   + +   ++           L  L L  N +      +L
Sbjct: 234 ALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTL 293

Query: 368 -----KNCTALESLDVGENEF 383
                +    L  L++  N F
Sbjct: 294 KTVIDEKMPDLLFLELNGNRF 314

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 44.1 bits (102), Expect = 3e-05
 Identities = 33/323 (10%), Positives = 95/323 (29%), Gaps = 36/323 (11%)

Query: 300 SLIGLKLKDNSLQGE----IPDCWMSYQNLEILELSNNKFTGK----LPNSLGSLTSLIW 351
           S+ G  LK +++  E    +    +   +++ + LS N    +    L  ++ S   L  
Sbjct: 4   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 63

Query: 352 LLLGKNRLS----------GTIPVSLKNCTALESLDVGENEFVGNIPT-----WTGERFS 396
                                +  +L  C  L ++ + +N F            +     
Sbjct: 64  AEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPL 123

Query: 397 RMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNIT--GMVAANSFTR 454
             + L                           +     +I    N +    M       +
Sbjct: 124 EHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ 183

Query: 455 SSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLK 514
           S +    + +  + I  E    +         E+  L  + +   +  + ++ + + +  
Sbjct: 184 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWP 243

Query: 515 ATQSLNFSHNSFTGRIPESIGAM------RSLESIDFSVNQLSGEIPQSM-----SNLMS 563
             + L  +    + R   ++           L+++    N++  +  +++       +  
Sbjct: 244 NLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPD 303

Query: 564 LNHLNLSNNKLTGKIPSSTQLQS 586
           L  L L+ N+ + +     +++ 
Sbjct: 304 LLFLELNGNRFSEEDDVVDEIRE 326

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.6 bits (97), Expect = 3e-05
 Identities = 25/107 (23%), Positives = 37/107 (34%), Gaps = 7/107 (6%)

Query: 327 ILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGN 386
           +L L++   T      L  L  +  L L  NRL    P       AL  L+V +      
Sbjct: 2   VLHLAHKDLTV--LCHLEQLLLVTHLDLSHNRLRALPP----ALAALRCLEVLQASDNAL 55

Query: 387 IPTWTGERFSRMVVLILRSNNF-HGPLPTRLCDLAFLQILDLADNNL 432
                     R+  L+L +N          L     L +L+L  N+L
Sbjct: 56  ENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 102

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.0 bits (85), Expect = 0.001
 Identities = 25/124 (20%), Positives = 44/124 (35%), Gaps = 9/124 (7%)

Query: 255 LSVHSNNMSGPLPLIS-SNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQG 313
           L +   +++    L     + +LDLS+N             +   + L  L+  DN+L+ 
Sbjct: 3   LHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPA-----LAALRCLEVLQASDNALEN 57

Query: 314 EIPDCWMSYQNLEILELSNNKFTG-KLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTA 372
                 +     + L L NN+         L S   L+ L L  N L     +  +    
Sbjct: 58  VDGVANLPRL--QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 115

Query: 373 LESL 376
           L S+
Sbjct: 116 LPSV 119

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.0 bits (85), Expect = 0.001
 Identities = 23/144 (15%), Positives = 43/144 (29%), Gaps = 30/144 (20%)

Query: 110 LDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLE 169
           L LA+  +   +   L  L  +  L + +N+L         + L  L             
Sbjct: 3   LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPA--LAALRCLEVL---------- 48

Query: 170 VRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQL 229
                                       + +   LQ L L N+ +     I+ L S  +L
Sbjct: 49  ----------------QASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRL 92

Query: 230 KFLDLGLNQFHGQITDLTKVTQLL 253
             L+L  N    +     ++ ++L
Sbjct: 93  VLLNLQGNSLCQEEGIQERLAEML 116

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.6 bits (84), Expect = 0.002
 Identities = 21/113 (18%), Positives = 35/113 (30%), Gaps = 24/113 (21%)

Query: 496 DVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIP---------------------ESI 534
            ++  +LT    LE   L     L+ SHN      P                     + +
Sbjct: 4   HLAHKDLTVLCHLE--QLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGV 61

Query: 535 GAMRSLESIDFSVNQL-SGEIPQSMSNLMSLNHLNLSNNKLTGKIPSSTQLQS 586
             +  L+ +    N+L      Q + +   L  LNL  N L  +     +L  
Sbjct: 62  ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAE 114

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.7 bits (99), Expect = 4e-05
 Identities = 28/193 (14%), Positives = 56/193 (29%), Gaps = 20/193 (10%)

Query: 103 QFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVG 162
            F      +L   S+   + Q+   L+++  +   N+ +    S      L  ++   + 
Sbjct: 22  AFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIK---SVQGIQYLPNVTKLFLN 76

Query: 163 GNKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHL--------------QYLN 208
           GNKLT       +     + L  +     S        +                     
Sbjct: 77  GNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQL 136

Query: 209 LLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNNMSGPLPL 268
                 ++      + S           +     I  L  +T+L  L +  N++S    L
Sbjct: 137 ESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRAL 196

Query: 269 IS-SNLVYLDLSN 280
               NL  L+L +
Sbjct: 197 AGLKNLDVLELFS 209

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (91), Expect = 6e-04
 Identities = 33/219 (15%), Positives = 59/219 (26%), Gaps = 13/219 (5%)

Query: 104 FKNLDNLDLANNSIVGPIPQSLGHLSNLRV--LQIYNNKLNGTLSEIHFSNLTKLSWFRV 161
            +N   L      +      +     +L    +   +                       
Sbjct: 28  PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 87

Query: 162 GGNKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIR 221
             N L +        P     L  +           +HS + +      N  +  +    
Sbjct: 88  ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNS 147

Query: 222 FLKSAFQLKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNNMSGPLPLIS----SNLVYLD 277
           F+  +F+   L L  N            TQL  L++  NN    LP       S  V LD
Sbjct: 148 FVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILD 207

Query: 278 LSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIP 316
           +S        S+ L       ++L  L+ +      ++P
Sbjct: 208 ISRTRIHSLPSYGL-------ENLKKLRARSTYNLKKLP 239

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (89), Expect = 0.001
 Identities = 26/257 (10%), Positives = 69/257 (26%), Gaps = 25/257 (9%)

Query: 324 NLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEF 383
           +  +     +K T ++P+ L    + I L     +L      +      LE +++ +N+ 
Sbjct: 9   SNRVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV 65

Query: 384 VGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNI 443
           +  I         ++  + +   N    +              L  N     +P      
Sbjct: 66  LEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIH 125

Query: 444 TGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLT 503
           +          +   +                         +  +        +++N + 
Sbjct: 126 SLQKVLLDIQDNINIHTIER-------------------NSFVGLSFESVILWLNKNGIQ 166

Query: 504 KSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMS 563
           +         +  +     +N+      +          +D S  ++       + NL  
Sbjct: 167 EIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKK 226

Query: 564 LNHLNLSNNKLTGKIPS 580
           L   +  N K   K+P+
Sbjct: 227 LRARSTYNLK---KLPT 240

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (88), Expect = 0.001
 Identities = 11/42 (26%), Positives = 14/42 (33%)

Query: 99  DQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNK 140
           D          LD++   I       L +L  LR    YN K
Sbjct: 195 DVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 38.5 bits (88), Expect = 0.001
 Identities = 26/169 (15%), Positives = 49/169 (28%), Gaps = 15/169 (8%)

Query: 75  FSGCVSIELESLDLRSSSIS-GHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRV 133
               V+ E E ++L         +   L   K   +L L+ N+I     + +  LS +  
Sbjct: 17  RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNI-----EKISSLSGMEN 71

Query: 134 LQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQLVALGFHNCYVGSR 193
           L+I +   N      +   +                +          V    +N      
Sbjct: 72  LRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWG 131

Query: 194 FPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAF---------QLKFLD 233
               L +   L+ L L  + + + +      S +          LK LD
Sbjct: 132 EIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	677
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.97
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.96
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.95
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.94
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.93
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.92
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.91
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.91
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.9
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.87
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.8
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.8
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.78
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.74
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.74
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.74
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.72
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.71
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.7
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.68
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.68
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.65
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.64
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.64
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.58
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.54
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.47
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.45
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.44
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.44
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.43
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.43
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.3
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.25
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.24
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.21
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.17
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.11
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.91
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.7
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.41
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.06

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.97  E-value=6.4e-31  Score=263.26  Aligned_cols=258  Identities=29%  Similarity=0.513  Sum_probs=226.3

Q ss_pred             CCcCeEecCCCCCcc--cCCcccccCCCCceecccC-ccccccCCcCcCCCCCccEEECcCCcccccCCccCcCCCCCCE
Q 048402          299 KSLIGLKLKDNSLQG--EIPDCWMSYQNLEILELSN-NKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALES  375 (677)
Q Consensus       299 ~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~  375 (677)
                      ..+++|+++++.+.+  .+|..++++++|++|+|++ |.+.+.+|..|+++++|++|++++|++.+..+..+..+.+|+.
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~  129 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcc
Confidence            357788888888776  4778899999999999986 7888888999999999999999999999888888888999999


Q ss_pred             EecCCCcccccCChhhhhccCCceEEEcCCCcccccCCccccCCCCC-CEEeCCCCcCCCCcCccccccccCccccccCc
Q 048402          376 LDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFL-QILDLADNNLFGTIPKCINNITGMVAANSFTR  454 (677)
Q Consensus       376 L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L-~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~  454 (677)
                      +++++|.+.+.+|..+. .++.++.+++++|.+.+.+|..+..+..+ +.+++++|++++..|..+.++..         
T Consensus       130 l~l~~N~~~~~~p~~l~-~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~---------  199 (313)
T d1ogqa_         130 LDFSYNALSGTLPPSIS-SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNL---------  199 (313)
T ss_dssp             EECCSSEEESCCCGGGG-GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCC---------
T ss_pred             cccccccccccCchhhc-cCcccceeecccccccccccccccccccccccccccccccccccccccccccc---------
Confidence            99999988888888776 78999999999999998888888888776 88999999998877776554332         


Q ss_pred             ccCccCCCCCCCcccccceeeEeecCCchhhhhhhccccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeeccccc
Q 048402          455 SSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESI  534 (677)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~  534 (677)
                                                            ..++++++...+.+|..+..+++++.+++++|.+.+.+| .+
T Consensus       200 --------------------------------------~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~  240 (313)
T d1ogqa_         200 --------------------------------------AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KV  240 (313)
T ss_dssp             --------------------------------------SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GC
T ss_pred             --------------------------------------ccccccccccccccccccccccccccccccccccccccc-cc
Confidence                                                  568999999999999999999999999999999996655 68


Q ss_pred             ccCCCCcEEECCCCcccccCccccccCCCCCEEEcccCcccccCCCCCCCCCcCcccccCC-CCCCCCCCCCC
Q 048402          535 GAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLSNNKLTGKIPSSTQLQSFDASSFTGN-DLCGAPLPKNC  606 (677)
Q Consensus       535 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n-~l~~~~~~~~c  606 (677)
                      +.+++|+.|++++|++++.+|+.|+++++|++|||++|+++|.+|+...+..++.+++.+| .+||.|++ .|
T Consensus       241 ~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l~~N~~l~g~plp-~c  312 (313)
T d1ogqa_         241 GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-AC  312 (313)
T ss_dssp             CCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred             ccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCcccCCCCCHHHhCCCccccCCCCC-CC
Confidence            8999999999999999999999999999999999999999999999888899999999999 59998864 44

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.96  E-value=3.8e-29  Score=250.25  Aligned_cols=252  Identities=25%  Similarity=0.411  Sum_probs=220.5

Q ss_pred             CccEEEccCCccccc--CChhHhhccCCCCCcCeEecCC-CCCcccCCcccccCCCCceecccCccccccCCcCcCCCCC
Q 048402          272 NLVYLDLSNNSFSGS--VSHYLCYRINEPKSLIGLKLKD-NSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTS  348 (677)
Q Consensus       272 ~L~~L~l~~n~l~~~--~~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  348 (677)
                      .++.|+++++.+.+.  +|..    ++.+++|++|++++ |.+.|.+|..|+++++|++|++++|++.+..+..+..+.+
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~----l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~  126 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSS----LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT  126 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGG----GGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTT
T ss_pred             EEEEEECCCCCCCCCCCCChH----HhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhh
Confidence            567778888877763  4454    44589999999987 8899999999999999999999999999999999999999


Q ss_pred             ccEEECcCCcccccCCccCcCCCCCCEEecCCCcccccCChhhhhccCC-ceEEEcCCCcccccCCccccCCCCCCEEeC
Q 048402          349 LIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSR-MVVLILRSNNFHGPLPTRLCDLAFLQILDL  427 (677)
Q Consensus       349 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  427 (677)
                      |+.+++++|.+.+.+|..+..++.++.+++++|.+.+.+|..+. .+.. ++.+++++|++++..|..+..+.. ..+++
T Consensus       127 L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~-~l~~l~~~l~~~~n~l~~~~~~~~~~l~~-~~l~l  204 (313)
T d1ogqa_         127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG-SFSKLFTSMTISRNRLTGKIPPTFANLNL-AFVDL  204 (313)
T ss_dssp             CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGG-CCCTTCCEEECCSSEEEEECCGGGGGCCC-SEEEC
T ss_pred             hcccccccccccccCchhhccCcccceeeccccccccccccccc-ccccccccccccccccccccccccccccc-ccccc
Confidence            99999999999999999999999999999999999999998887 4555 589999999999998888887755 47999


Q ss_pred             CCCcCCCCcCccccccccCccccccCcccCccCCCCCCCcccccceeeEeecCCchhhhhhhccccEEEcccCcccccCC
Q 048402          428 ADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIP  507 (677)
Q Consensus       428 s~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~  507 (677)
                      +++...+.+|..+..++.                                              ++.+++++|.+.+.+|
T Consensus       205 ~~~~~~~~~~~~~~~~~~----------------------------------------------l~~l~~~~~~l~~~~~  238 (313)
T d1ogqa_         205 SRNMLEGDASVLFGSDKN----------------------------------------------TQKIHLAKNSLAFDLG  238 (313)
T ss_dssp             CSSEEEECCGGGCCTTSC----------------------------------------------CSEEECCSSEECCBGG
T ss_pred             cccccccccccccccccc----------------------------------------------cccccccccccccccc
Confidence            999988888776655544                                              4899999999987655


Q ss_pred             cccCCCCCCcEEeccCCcceeecccccccCCCCcEEECCCCcccccCccccccCCCCCEEEcccCccccc
Q 048402          508 LEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLSNNKLTGK  577 (677)
Q Consensus       508 ~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~  577 (677)
                       .++.+++|+.|+|++|+++|.+|+.|+++++|++|+|++|+++|.+|+ +.++++|+.+++++|+..|.
T Consensus       239 -~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~~l~g  306 (313)
T d1ogqa_         239 -KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCG  306 (313)
T ss_dssp             -GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSSEEES
T ss_pred             -ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCccccC
Confidence             688999999999999999999999999999999999999999999995 68899999999999985443

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.95  E-value=2e-25  Score=230.34  Aligned_cols=341  Identities=21%  Similarity=0.270  Sum_probs=198.0

Q ss_pred             CCCCCCEEEccCCcCCcccchhhhhccccCcCCccEEEcccCcCccccccccCCCCCCCEEECcCCccccCCCcCCCCCC
Q 048402           50 SLCNLKSINLRGVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLS  129 (677)
Q Consensus        50 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  129 (677)
                      .+.+|++|+++++.|+..  +.++.++     +|++|++++|++++..+  ++++++|++|++++|.+.+..  .++.++
T Consensus        42 ~l~~l~~L~l~~~~I~~l--~gl~~L~-----nL~~L~Ls~N~l~~l~~--l~~L~~L~~L~L~~n~i~~i~--~l~~l~  110 (384)
T d2omza2          42 DLDQVTTLQADRLGIKSI--DGVEYLN-----NLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADIT--PLANLT  110 (384)
T ss_dssp             HHTTCCEEECCSSCCCCC--TTGGGCT-----TCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG--GGTTCT
T ss_pred             HhCCCCEEECCCCCCCCc--cccccCC-----CCCEEeCcCCcCCCCcc--ccCCccccccccccccccccc--cccccc
Confidence            445566666666665532  2344555     66666666666664322  666666666666666665332  255666


Q ss_pred             CCCEEEccccccccccChhhhhCCCCCCEEEeeccccceecCCCCCCCcCccEEEeecccCCCCCChhccCCCCCCEEEc
Q 048402          130 NLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNL  209 (677)
Q Consensus       130 ~L~~L~L~~n~i~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l  209 (677)
                      +|+.|+++++.++ .++.  ......+.......+.+.....................     .....+...+.......
T Consensus       111 ~L~~L~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~  182 (384)
T d2omza2         111 NLTGLTLFNNQIT-DIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQV-----TDLKPLANLTTLERLDI  182 (384)
T ss_dssp             TCCEEECCSSCCC-CCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESC-----CCCGGGTTCTTCCEEEC
T ss_pred             ccccccccccccc-cccc--cccccccccccccccccccccccccccccccccccccc-----chhhhhccccccccccc
Confidence            6666666666654 2222  23444555555555544332222211111111111111     11122333334444444


Q ss_pred             cCCCCCCccchHHHhccCCccEEECCCccCccccCCccccccccEEEcccCCCCCCCC-CCCCCccEEEccCCcccccCC
Q 048402          210 LNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNNMSGPLP-LISSNLVYLDLSNNSFSGSVS  288 (677)
Q Consensus       210 ~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~L~~L~l~~n~l~~~~~  288 (677)
                      ..+......   ....+++++.+++++|.+++..+ ....++|+.+++++|.++.... ..+++|+.+++++|.+++..+
T Consensus       183 ~~~~~~~~~---~~~~l~~~~~l~l~~n~i~~~~~-~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~  258 (384)
T d2omza2         183 SSNKVSDIS---VLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP  258 (384)
T ss_dssp             CSSCCCCCG---GGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG
T ss_pred             ccccccccc---ccccccccceeeccCCccCCCCc-ccccCCCCEEECCCCCCCCcchhhcccccchhccccCccCCCCc
Confidence            444332221   12334556666666666554332 3334556666666666554322 125677777777777765432


Q ss_pred             hhHhhccCCCCCcCeEecCCCCCcccCCcccccCCCCceecccCccccccCCcCcCCCCCccEEECcCCcccccCCccCc
Q 048402          289 HYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLK  368 (677)
Q Consensus       289 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~  368 (677)
                            +..+++|++|+++++.+++..  .+..++.++.++++.|.+.+  ...+..+++++.|++++|++++..  .+.
T Consensus       259 ------~~~~~~L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~--~~~~~~~~~l~~L~ls~n~l~~l~--~l~  326 (384)
T d2omza2         259 ------LSGLTKLTELKLGANQISNIS--PLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDIS--PVS  326 (384)
T ss_dssp             ------GTTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSC--CGGGGGCTTCSEEECCSSCCSCCG--GGG
T ss_pred             ------ccccccCCEeeccCcccCCCC--cccccccccccccccccccc--ccccchhcccCeEECCCCCCCCCc--ccc
Confidence                  334677888888888776433  36677788888888888774  234677788888888888887543  377


Q ss_pred             CCCCCCEEecCCCcccccCChhhhhccCCceEEEcCCCcccccCCccccCCCCCCEEeCCCC
Q 048402          369 NCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADN  430 (677)
Q Consensus       369 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n  430 (677)
                      .+++|++|++++|+++ .++ .+. .+++|++|++++|++++..|  +.++++|+.|++++|
T Consensus       327 ~l~~L~~L~L~~n~l~-~l~-~l~-~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         327 SLTKLQRLFFANNKVS-DVS-SLA-NLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             GCTTCCEEECCSSCCC-CCG-GGG-GCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             cCCCCCEEECCCCCCC-CCh-hHc-CCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            7888888888888886 444 333 68888888888888886543  788888888888876

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.94  E-value=1.7e-25  Score=230.86  Aligned_cols=355  Identities=26%  Similarity=0.318  Sum_probs=258.7

Q ss_pred             EccCCCCceecCCccccCCCCCCEEecCCCCCCCccCchhhcCCCCCCEEEccCCcCCcccchhhhhccccCcCCccEEE
Q 048402            8 SLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVSIELESLD   87 (677)
Q Consensus         8 ~Ls~n~~~~~i~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~L~~L~   87 (677)
                      .+..+.+++.+   ....+.+|++|+++ ++.+.. + ..+..+++|++|++++|++++..+  ++.++     +|++|+
T Consensus        28 ~l~~~~~~~~~---~~~~l~~l~~L~l~-~~~I~~-l-~gl~~L~nL~~L~Ls~N~l~~l~~--l~~L~-----~L~~L~   94 (384)
T d2omza2          28 VLGKTNVTDTV---SQTDLDQVTTLQAD-RLGIKS-I-DGVEYLNNLTQINFSNNQLTDITP--LKNLT-----KLVDIL   94 (384)
T ss_dssp             HTTCSSTTSEE---CHHHHTTCCEEECC-SSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCT-----TCCEEE
T ss_pred             HhCCCCCCCcc---CHHHhCCCCEEECC-CCCCCC-c-cccccCCCCCEEeCcCCcCCCCcc--ccCCc-----cccccc
Confidence            35555666554   23457789999999 666664 3 468899999999999999987643  78888     999999


Q ss_pred             cccCcCccccccccCCCCCCCEEECcCCccccCCCcCCCCCCCCCEEEccccccccccChhhhhCCCCCCEEEeeccccc
Q 048402           88 LRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLT  167 (677)
Q Consensus        88 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~l~~~~~~~l~~L~~L~l~~n~l~  167 (677)
                      +++|.+.+..+  ++++++|+.|+++++.+++..  .......+.......+.+. .+..  .......+........  
T Consensus        95 L~~n~i~~i~~--l~~l~~L~~L~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~-~~~~--~~~~~~~~~~~~~~~~--  165 (384)
T d2omza2          95 MNNNQIADITP--LANLTNLTGLTLFNNQITDID--PLKNLTNLNRLELSSNTIS-DISA--LSGLTSLQQLSFGNQV--  165 (384)
T ss_dssp             CCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG--GGTTCTTCSEEEEEEEEEC-CCGG--GTTCTTCSEEEEEESC--
T ss_pred             ccccccccccc--ccccccccccccccccccccc--ccccccccccccccccccc-cccc--cccccccccccccccc--
Confidence            99999986543  889999999999999987543  3455678888888888775 3322  1122222222221111  


Q ss_pred             eecCCCCCCCcCccEEEeecccCCCCCChhccCCCCCCEEEccCCCCCCccchHHHhccCCccEEECCCccCccccCCcc
Q 048402          168 LEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQITDLT  247 (677)
Q Consensus       168 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~  247 (677)
                       .....+.............+..  .....+..+++++.+++++|.+++..+.   ...++|+++++++|.++. ++.+.
T Consensus       166 -~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~l~l~~n~i~~~~~~---~~~~~L~~L~l~~n~l~~-~~~l~  238 (384)
T d2omza2         166 -TDLKPLANLTTLERLDISSNKV--SDISVLAKLTNLESLIATNNQISDITPL---GILTNLDELSLNGNQLKD-IGTLA  238 (384)
T ss_dssp             -CCCGGGTTCTTCCEEECCSSCC--CCCGGGGGCTTCSEEECCSSCCCCCGGG---GGCTTCCEEECCSSCCCC-CGGGG
T ss_pred             -chhhhhcccccccccccccccc--ccccccccccccceeeccCCccCCCCcc---cccCCCCEEECCCCCCCC-cchhh
Confidence             1111222333334444444332  3345567788899999999988887553   346789999999998875 44566


Q ss_pred             ccccccEEEcccCCCCCCCCCC-CCCccEEEccCCcccccCChhHhhccCCCCCcCeEecCCCCCcccCCcccccCCCCc
Q 048402          248 KVTQLLFLSVHSNNMSGPLPLI-SSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLE  326 (677)
Q Consensus       248 ~~~~L~~L~l~~n~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~  326 (677)
                      .+++|+.+++++|.+++..+.. +++|++|+++++.+++..+      +..++.++.+.+..|.+.+.  ..+..+++++
T Consensus       239 ~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~l~~~~~------~~~~~~l~~l~~~~n~l~~~--~~~~~~~~l~  310 (384)
T d2omza2         239 SLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISP------LAGLTALTNLELNENQLEDI--SPISNLKNLT  310 (384)
T ss_dssp             GCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGG------GTTCTTCSEEECCSSCCSCC--GGGGGCTTCS
T ss_pred             cccccchhccccCccCCCCcccccccCCEeeccCcccCCCCc------cccccccccccccccccccc--cccchhcccC
Confidence            7789999999999988766543 7889999999998876432      34478899999999988753  3578889999


Q ss_pred             eecccCccccccCCcCcCCCCCccEEECcCCcccccCCccCcCCCCCCEEecCCCcccccCChhhhhccCCceEEEcCCC
Q 048402          327 ILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSN  406 (677)
Q Consensus       327 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n  406 (677)
                      .|++++|++++..  .+..+++|++|++++|++++ ++ .+.++++|++|++++|++++..|   ..++++|+.|+|++|
T Consensus       311 ~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~---l~~l~~L~~L~L~~N  383 (384)
T d2omza2         311 YLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP---LANLTRITQLGLNDQ  383 (384)
T ss_dssp             EEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG---GTTCTTCSEEECCCE
T ss_pred             eEECCCCCCCCCc--ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh---hccCCCCCEeeCCCC
Confidence            9999999998643  37889999999999999984 33 58899999999999999985433   237899999999987

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.93  E-value=3.9e-24  Score=212.68  Aligned_cols=268  Identities=16%  Similarity=0.226  Sum_probs=185.5

Q ss_pred             cccEEEcccCCCCCCCCCCCCCccEEEccCCcccccCChhHhhccCCCCCcCeEecCCCCCcccCCcccccCCCCceecc
Q 048402          251 QLLFLSVHSNNMSGPLPLISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILEL  330 (677)
Q Consensus       251 ~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L  330 (677)
                      ..+.++.++.+++..++...+++++|++++|+++...+..+    ..+++|++|++++|.+....|..|.++++|++|++
T Consensus        11 ~~~~~~C~~~~L~~lP~~l~~~l~~L~Ls~N~i~~l~~~~f----~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l   86 (305)
T d1xkua_          11 HLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDF----KNLKNLHTLILINNKISKISPGAFAPLVKLERLYL   86 (305)
T ss_dssp             ETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTT----TTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             cCCEEEecCCCCCccCCCCCCCCCEEECcCCcCCCcChhHh----hccccccccccccccccccchhhhhCCCccCEecc
Confidence            34555666666664444345677788888887765554433    34778888888888888777777888888888888


Q ss_pred             cCccccccCCcCcCCCCCccEEECcCCcccccCCccCcCCCCCCEEecCCCcccc-cCChhhhhccCCceEEEcCCCccc
Q 048402          331 SNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVG-NIPTWTGERFSRMVVLILRSNNFH  409 (677)
Q Consensus       331 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~~l~~L~~L~L~~n~l~  409 (677)
                      ++|+++. +|..+  ...++.|++.+|.+.+..+..+.....+..++...|.... ......+..+++|+.+++++|.+.
T Consensus        87 ~~n~l~~-l~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~  163 (305)
T d1xkua_          87 SKNQLKE-LPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT  163 (305)
T ss_dssp             CSSCCSB-CCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred             cCCccCc-Cccch--hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcc
Confidence            8888873 44433  3567788888888876666667777777888877775432 122223346777888888888776


Q ss_pred             ccCCccccCCCCCCEEeCCCCcCCCCcCccccccccCccccccCcccCccCCCCCCCcccccceeeEeecCCchhhhhhh
Q 048402          410 GPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEIL  489 (677)
Q Consensus       410 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  489 (677)
                      . +|..  .+++|+.|++++|...+..+..+..++.                                            
T Consensus       164 ~-l~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~--------------------------------------------  196 (305)
T d1xkua_         164 T-IPQG--LPPSLTELHLDGNKITKVDAASLKGLNN--------------------------------------------  196 (305)
T ss_dssp             S-CCSS--CCTTCSEEECTTSCCCEECTGGGTTCTT--------------------------------------------
T ss_pred             c-cCcc--cCCccCEEECCCCcCCCCChhHhhcccc--------------------------------------------
Confidence            3 3433  2567888888888776655555544433                                            


Q ss_pred             ccccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeecccccccCCCCcEEECCCCcccccCcccc------ccCCC
Q 048402          490 NLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSM------SNLMS  563 (677)
Q Consensus       490 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l------~~l~~  563 (677)
                        +++|++++|.+++..+..+.++++|++|+|++|+++ .+|++|..+++|++|++++|+|+.....+|      ..+++
T Consensus       197 --l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~  273 (305)
T d1xkua_         197 --LAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKAS  273 (305)
T ss_dssp             --CCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCC
T ss_pred             --ccccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccCccChhhccCcchhcccCC
Confidence              377888888888777777888888888888888887 567778888888888888888875443333      34567


Q ss_pred             CCEEEcccCccc
Q 048402          564 LNHLNLSNNKLT  575 (677)
Q Consensus       564 L~~L~ls~N~l~  575 (677)
                      |+.|++++|++.
T Consensus       274 L~~L~L~~N~~~  285 (305)
T d1xkua_         274 YSGVSLFSNPVQ  285 (305)
T ss_dssp             CSEEECCSSSSC
T ss_pred             CCEEECCCCcCc
Confidence            888888888875

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=2.7e-24  Score=211.27  Aligned_cols=211  Identities=19%  Similarity=0.203  Sum_probs=136.2

Q ss_pred             CCceecccCccccccCCcCcCCCCCccEEECcCCcccccCCccCcCCCCCCEEecCCCcccccCChhhhhccCCceEEEc
Q 048402          324 NLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLIL  403 (677)
Q Consensus       324 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L  403 (677)
                      ++++|+|++|+|+...+.+|.+++.|++|++++|++....+..+..++.++.++...+.....++...+.++++|++|++
T Consensus        33 ~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l  112 (284)
T d1ozna_          33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL  112 (284)
T ss_dssp             TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEec
Confidence            44555555555554444455555555555555555555555555555555555544332222343333335555666666


Q ss_pred             CCCcccccCCccccCCCCCCEEeCCCCcCCCCcCccccccccCccccccCcccCccCCCCCCCcccccceeeEeecCCch
Q 048402          404 RSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAI  483 (677)
Q Consensus       404 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  483 (677)
                      ++|.+....+..+...++|+.+++++|++++..+..|..+++                                      
T Consensus       113 ~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~--------------------------------------  154 (284)
T d1ozna_         113 DRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGN--------------------------------------  154 (284)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT--------------------------------------
T ss_pred             CCcccccccccccchhcccchhhhccccccccChhHhccccc--------------------------------------
Confidence            666555445555556666666666666665444444433333                                      


Q ss_pred             hhhhhhccccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeecccccccCCCCcEEECCCCcccccCccccccCCC
Q 048402          484 EYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMS  563 (677)
Q Consensus       484 ~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~  563 (677)
                              |+.|++++|++++..+..|.++++|+.+++++|++++..|..|.++++|++|++++|++.+..|..|+.+++
T Consensus       155 --------L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~  226 (284)
T d1ozna_         155 --------LTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRA  226 (284)
T ss_dssp             --------CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTT
T ss_pred             --------hhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccc
Confidence                    367777777777677777888888888888888888777888888888888888888888777788888888


Q ss_pred             CCEEEcccCcccccCCC
Q 048402          564 LNHLNLSNNKLTGKIPS  580 (677)
Q Consensus       564 L~~L~ls~N~l~~~~p~  580 (677)
                      |++|++++|++.|.++.
T Consensus       227 L~~L~l~~N~l~C~C~~  243 (284)
T d1ozna_         227 LQYLRLNDNPWVCDCRA  243 (284)
T ss_dssp             CCEEECCSSCEECSGGG
T ss_pred             cCEEEecCCCCCCCccc
Confidence            88888888888887764

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.91  E-value=1.6e-22  Score=200.85  Aligned_cols=265  Identities=21%  Similarity=0.255  Sum_probs=156.0

Q ss_pred             CccEEEcccCcCccccccccCCCCCCCEEECcCCccccCCCcCCCCCCCCCEEEccccccccccChhhhhCCCCCCEEEe
Q 048402           82 ELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRV  161 (677)
Q Consensus        82 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~l~~~~~~~l~~L~~L~l  161 (677)
                      ..+.++-++++++ .+|..+.  +++++|++++|.++...+.+|.++++|++|++++|.+. .++...|.++++|+.|++
T Consensus        11 ~~~~~~C~~~~L~-~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~-~i~~~~f~~l~~L~~L~l   86 (305)
T d1xkua_          11 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYL   86 (305)
T ss_dssp             ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEEC
T ss_pred             cCCEEEecCCCCC-ccCCCCC--CCCCEEECcCCcCCCcChhHhhcccccccccccccccc-ccchhhhhCCCccCEecc
Confidence            4677888887787 4565553  57888888888888655567888888888888888887 555557888888888888


Q ss_pred             eccccceecCCCCCCCcCccEEEeecccCCCCCChhccCCCCCCEEEccCCCCCCccchHHHhccCCccEEECCCccCcc
Q 048402          162 GGNKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHG  241 (677)
Q Consensus       162 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~  241 (677)
                      ++|+++.....                           ....++.|.+.+|.+....+..+ ........++...|....
T Consensus        87 ~~n~l~~l~~~---------------------------~~~~l~~L~~~~n~l~~l~~~~~-~~~~~~~~l~~~~n~~~~  138 (305)
T d1xkua_          87 SKNQLKELPEK---------------------------MPKTLQELRVHENEITKVRKSVF-NGLNQMIVVELGTNPLKS  138 (305)
T ss_dssp             CSSCCSBCCSS---------------------------CCTTCCEEECCSSCCCBBCHHHH-TTCTTCCEEECCSSCCCG
T ss_pred             cCCccCcCccc---------------------------hhhhhhhhhccccchhhhhhhhh-hccccccccccccccccc
Confidence            88877643221                           12345566666666655433322 334455566665554332


Q ss_pred             cc---CCccccccccEEEcccCCCCCCCCCCCCCccEEEccCCcccccCChhHhhccCCCCCcCeEecCCCCCcccCCcc
Q 048402          242 QI---TDLTKVTQLLFLSVHSNNMSGPLPLISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDC  318 (677)
Q Consensus       242 ~~---~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~  318 (677)
                      ..   ..+..+++|+.+++++|.+.......+++++.|++++|...+..+..+    ..++.++.|++++|.+.+..+.+
T Consensus       139 ~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~----~~~~~l~~L~~s~n~l~~~~~~~  214 (305)
T d1xkua_         139 SGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASL----KGLNNLAKLGLSFNSISAVDNGS  214 (305)
T ss_dssp             GGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTGGG----TTCTTCCEEECCSSCCCEECTTT
T ss_pred             cCCCccccccccccCccccccCCccccCcccCCccCEEECCCCcCCCCChhHh----hcccccccccccccccccccccc
Confidence            21   122333556666666665554333335556666666665554444322    23555666666666665555555


Q ss_pred             cccCCCCceecccCccccccCCcCcCCCCCccEEECcCCcccccCCccC------cCCCCCCEEecCCCcc
Q 048402          319 WMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSL------KNCTALESLDVGENEF  383 (677)
Q Consensus       319 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~------~~l~~L~~L~l~~n~l  383 (677)
                      |.++++|++|+|++|+++ .+|.+|..+++|+.|++++|+++.+....|      ....+|+.|++++|++
T Consensus       215 ~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~  284 (305)
T d1xkua_         215 LANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV  284 (305)
T ss_dssp             GGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred             ccccccceeeeccccccc-ccccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcC
Confidence            556666666666666655 345555556666666666665554332222      2234445555555544

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=8.8e-24  Score=207.52  Aligned_cols=251  Identities=19%  Similarity=0.182  Sum_probs=204.9

Q ss_pred             cEEEccCCCCceecCCccccCCCCCCEEecCCCCCCCccCchhhcCCCCCCEEEccCCcCCcccchhhhhccccCcCCcc
Q 048402            5 EYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVSIELE   84 (677)
Q Consensus         5 ~~L~Ls~n~~~~~i~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~L~   84 (677)
                      ..++.++++++ ++ |..+  .+++++|+|+ ++.++...+.+|.++++|++|++++|.+....+..+....     .++
T Consensus        14 ~~v~c~~~~L~-~i-P~~i--p~~~~~L~Ls-~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~-----~~~   83 (284)
T d1ozna_          14 VTTSCPQQGLQ-AV-PVGI--PAASQRIFLH-GNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLA-----LLE   83 (284)
T ss_dssp             CEEECCSSCCS-SC-CTTC--CTTCSEEECT-TSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT-----TCC
T ss_pred             eEEEcCCCCCC-cc-CCCC--CCCCCEEECc-CCcCCCCCHHHhhccccccccccccccccccccccccccc-----ccc
Confidence            35677888887 77 4443  2678999999 7778766667899999999999999999988888888777     888


Q ss_pred             EEEcc-cCcCccccccccCCCCCCCEEECcCCccccCCCcCCCCCCCCCEEEccccccccccChhhhhCCCCCCEEEeec
Q 048402           85 SLDLR-SSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGG  163 (677)
Q Consensus        85 ~L~L~-~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~l~~~~~~~l~~L~~L~l~~  163 (677)
                      .++.. .+.++...+..|.++++|++|++++|.+....+..+...++|+.+++++|.++ .++...|..+++|+.|++++
T Consensus        84 ~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~-~i~~~~f~~~~~L~~L~l~~  162 (284)
T d1ozna_          84 QLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHG  162 (284)
T ss_dssp             EEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCS
T ss_pred             ccccccccccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhcccccc-ccChhHhccccchhhccccc
Confidence            88765 56777777888999999999999999998777788889999999999999998 67666899999999999999


Q ss_pred             cccceecCCCCCCCcCccEEEeecccCCCCCChhccCCCCCCEEEccCCCCCCccchHHHhccCCccEEECCCccCcccc
Q 048402          164 NKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQI  243 (677)
Q Consensus       164 n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~  243 (677)
                      |.++...+.+|..+++|+.+++++|.+.+..|.+|..+++|++|++++|.+.+..+..+ ..+++|++|++++|.+.+..
T Consensus       163 N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~-~~~~~L~~L~l~~N~l~C~C  241 (284)
T d1ozna_         163 NRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEAL-APLRALQYLRLNDNPWVCDC  241 (284)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHH-TTCTTCCEEECCSSCEECSG
T ss_pred             CcccccchhhhccccccchhhhhhccccccChhHhhhhhhccccccccccccccccccc-ccccccCEEEecCCCCCCCc
Confidence            99999989999999999999999999999999999999999999999999998866555 56889999999999987654


Q ss_pred             CCccccccccEEEcccCCCCCCCC
Q 048402          244 TDLTKVTQLLFLSVHSNNMSGPLP  267 (677)
Q Consensus       244 ~~~~~~~~L~~L~l~~n~~~~~~~  267 (677)
                      +.......++.+....+.+....|
T Consensus       242 ~~~~l~~~l~~~~~~~~~~~C~~p  265 (284)
T d1ozna_         242 RARPLWAWLQKFRGSSSEVPCSLP  265 (284)
T ss_dssp             GGHHHHHHHHHCCSEECCCBEEES
T ss_pred             cchHHHHHHHhCcCCCCceEeCCc
Confidence            322222334444444444444333

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.8e-23  Score=202.89  Aligned_cols=203  Identities=20%  Similarity=0.199  Sum_probs=145.4

Q ss_pred             CCCceecccCccccccCCcCcCCCCCccEEECcCCcccccCCccCcCCCCCCEEecCCCcccccCChhhhhccCCceEEE
Q 048402          323 QNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLI  402 (677)
Q Consensus       323 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~  402 (677)
                      ..+.+++.+++.++ .+|..+.  ++++.|+|++|++++..+.+|.++++|++|++++|.++ .++..  ..+++|++|+
T Consensus        10 ~~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~~~--~~l~~L~~L~   83 (266)
T d1p9ag_          10 ASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD--GTLPVLGTLD   83 (266)
T ss_dssp             TTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECC--SCCTTCCEEE
T ss_pred             CCCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccc-ccccc--cccccccccc
Confidence            34444555555555 3444332  35666666666666555555666666666666666665 34432  2466677777


Q ss_pred             cCCCcccccCCccccCCCCCCEEeCCCCcCCCCcCccccccccCccccccCcccCccCCCCCCCcccccceeeEeecCCc
Q 048402          403 LRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEA  482 (677)
Q Consensus       403 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  482 (677)
                      +++|+++ ..+..+..+++|+.|++++|.+.+..+..+..                                        
T Consensus        84 Ls~N~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~----------------------------------------  122 (266)
T d1p9ag_          84 LSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRG----------------------------------------  122 (266)
T ss_dssp             CCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTT----------------------------------------
T ss_pred             ccccccc-ccccccccccccccccccccccceeecccccc----------------------------------------
Confidence            7777666 34556677777888888877776444433333                                        


Q ss_pred             hhhhhhhccccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeecccccccCCCCcEEECCCCcccccCccccccCC
Q 048402          483 IEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLM  562 (677)
Q Consensus       483 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  562 (677)
                            +.+++.|++++|.++...+..+..++.|+.+++++|++++..++.|..+++|++|+|++|+|+ .+|+.+..++
T Consensus       123 ------l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~  195 (266)
T d1p9ag_         123 ------LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSH  195 (266)
T ss_dssp             ------CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTC
T ss_pred             ------ccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCC
Confidence                  334478888888888777788889999999999999999888888999999999999999999 7888888999


Q ss_pred             CCCEEEcccCcccccCC
Q 048402          563 SLNHLNLSNNKLTGKIP  579 (677)
Q Consensus       563 ~L~~L~ls~N~l~~~~p  579 (677)
                      +|+.|+|++|++.|.+.
T Consensus       196 ~L~~L~L~~Np~~CdC~  212 (266)
T d1p9ag_         196 LLPFAFLHGNPWLCNCE  212 (266)
T ss_dssp             CCSEEECCSCCBCCSGG
T ss_pred             CCCEEEecCCCCCCCcc
Confidence            99999999999998764

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=2.1e-21  Score=188.02  Aligned_cols=200  Identities=22%  Similarity=0.191  Sum_probs=151.4

Q ss_pred             CCCcCeEecCCCCCcccCCcccccCCCCceecccCccccccCCcCcCCCCCccEEECcCCcccccCCccCcCCCCCCEEe
Q 048402          298 PKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLD  377 (677)
Q Consensus       298 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~  377 (677)
                      ...+.+++.++++++ .+|..+.  +++++|+|++|++++..+.+|.++++|++|++++|+++.. + .+..+++|++|+
T Consensus         9 ~~~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l-~-~~~~l~~L~~L~   83 (266)
T d1p9ag_           9 VASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-Q-VDGTLPVLGTLD   83 (266)
T ss_dssp             STTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-E-CCSCCTTCCEEE
T ss_pred             cCCCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccccc-c-cccccccccccc
Confidence            345556677777776 3554442  4677788888877766666777788888888888877743 2 356778888888


Q ss_pred             cCCCcccccCChhhhhccCCceEEEcCCCcccccCCccccCCCCCCEEeCCCCcCCCCcCccccccccCccccccCcccC
Q 048402          378 VGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQ  457 (677)
Q Consensus       378 l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~  457 (677)
                      +++|++. ..+..+ ..+++|+.|++++|.+.+..+..+..+.+++.|++++|.+....+..+..+              
T Consensus        84 Ls~N~l~-~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l--------------  147 (266)
T d1p9ag_          84 LSHNQLQ-SLPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPT--------------  147 (266)
T ss_dssp             CCSSCCS-SCCCCT-TTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTC--------------
T ss_pred             ccccccc-cccccc-ccccccccccccccccceeeccccccccccccccccccccceecccccccc--------------
Confidence            8888776 334433 367888888888888887777777888888888888888875444444433              


Q ss_pred             ccCCCCCCCcccccceeeEeecCCchhhhhhhccccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeecccccccC
Q 048402          458 QYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAM  537 (677)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l  537 (677)
                                                      +.++.+++++|++++..+..|..+++|++|+|++|+|+ .+|+.+..+
T Consensus       148 --------------------------------~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~  194 (266)
T d1p9ag_         148 --------------------------------PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGS  194 (266)
T ss_dssp             --------------------------------TTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTT
T ss_pred             --------------------------------ccchhcccccccccccCccccccccccceeecccCCCc-ccChhHCCC
Confidence                                            34588899999998888888999999999999999999 788888899


Q ss_pred             CCCcEEECCCCccc
Q 048402          538 RSLESIDFSVNQLS  551 (677)
Q Consensus       538 ~~L~~L~Ls~N~l~  551 (677)
                      ++|+.|+|++|.+.
T Consensus       195 ~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         195 HLLPFAFLHGNPWL  208 (266)
T ss_dssp             CCCSEEECCSCCBC
T ss_pred             CCCCEEEecCCCCC
Confidence            99999999999876

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.80  E-value=1.3e-17  Score=168.79  Aligned_cols=299  Identities=23%  Similarity=0.296  Sum_probs=131.1

Q ss_pred             CCCEEecCCCCCCCccCchhhcCCCCCCEEEccCCcCCcccchhhhhccccCcCCccEEEcccCcCccccccccCCCCCC
Q 048402           28 SISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNL  107 (677)
Q Consensus        28 ~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L  107 (677)
                      ++++|||+ ++.++ .+|+.   .++|++|++++|+|+. +|+.   +.     +|++|++++|+++. +++ +  .+.|
T Consensus        39 ~l~~LdLs-~~~L~-~lp~~---~~~L~~L~Ls~N~l~~-lp~~---~~-----~L~~L~l~~n~l~~-l~~-l--p~~L  100 (353)
T d1jl5a_          39 QAHELELN-NLGLS-SLPEL---PPHLESLVASCNSLTE-LPEL---PQ-----SLKSLLVDNNNLKA-LSD-L--PPLL  100 (353)
T ss_dssp             TCSEEECT-TSCCS-CCCSC---CTTCSEEECCSSCCSS-CCCC---CT-----TCCEEECCSSCCSC-CCS-C--CTTC
T ss_pred             CCCEEEeC-CCCCC-CCCCC---CCCCCEEECCCCCCcc-cccc---hh-----hhhhhhhhhcccch-hhh-h--cccc
Confidence            45566665 44443 34432   3455666666655552 2322   12     45555555555542 121 1  1235


Q ss_pred             CEEECcCCccccCCCcCCCCCCCCCEEEccccccccccChhhhhCCCCCCEEEeeccccceecCCCCCCCcCccEEEeec
Q 048402          108 DNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQLVALGFHN  187 (677)
Q Consensus       108 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~  187 (677)
                      ++|++++|.+. .+|. ++.+++|++|+++++.+. ..+.    ....+..+.+..+.                      
T Consensus       101 ~~L~L~~n~l~-~lp~-~~~l~~L~~L~l~~~~~~-~~~~----~~~~l~~l~~~~~~----------------------  151 (353)
T d1jl5a_         101 EYLGVSNNQLE-KLPE-LQNSSFLKIIDVDNNSLK-KLPD----LPPSLEFIAAGNNQ----------------------  151 (353)
T ss_dssp             CEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSC----------------------
T ss_pred             ccccccccccc-cccc-hhhhccceeecccccccc-cccc----ccccccchhhcccc----------------------
Confidence            55555555554 2332 345555555555555544 2221    12333334333322                      


Q ss_pred             ccCCCCCChhccCCCCCCEEEccCCCCCCccchHHHhccCCccEEECCCccCccccCCccccccccEEEcccCCCCCCCC
Q 048402          188 CYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNNMSGPLP  267 (677)
Q Consensus       188 n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~  267 (677)
                        .  ..+..+..++.++.+.+.+|........     ....+.+..+.+.+. .++....++.++.+++++|.... .+
T Consensus       152 --~--~~~~~l~~l~~l~~L~l~~n~~~~~~~~-----~~~~~~l~~~~~~~~-~~~~~~~l~~L~~l~l~~n~~~~-~~  220 (353)
T d1jl5a_         152 --L--EELPELQNLPFLTAIYADNNSLKKLPDL-----PLSLESIVAGNNILE-ELPELQNLPFLTTIYADNNLLKT-LP  220 (353)
T ss_dssp             --C--SSCCCCTTCTTCCEEECCSSCCSSCCCC-----CTTCCEEECCSSCCS-SCCCCTTCTTCCEEECCSSCCSS-CC
T ss_pred             --c--cccccccccccceecccccccccccccc-----ccccccccccccccc-ccccccccccccccccccccccc-cc
Confidence              1  1223344556666666666655443211     122344444444333 23334445566666666655442 33


Q ss_pred             CCCCCccEEEccCCcccccCChhHhhccCCCCCcCeEecCCCCCcccCCcccccCCCCceecccCccccccCCcCcCCCC
Q 048402          268 LISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLT  347 (677)
Q Consensus       268 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  347 (677)
                      ....++..+.+.++.+.....        ....+...++..+.+.+...    -.......++..+.+.+.    ...++
T Consensus       221 ~~~~~l~~~~~~~~~~~~~~~--------~~~~l~~~~~~~~~~~~l~~----l~~~~~~~~~~~~~~~~~----~~~~~  284 (353)
T d1jl5a_         221 DLPPSLEALNVRDNYLTDLPE--------LPQSLTFLDVSENIFSGLSE----LPPNLYYLNASSNEIRSL----CDLPP  284 (353)
T ss_dssp             SCCTTCCEEECCSSCCSCCCC--------CCTTCCEEECCSSCCSEESC----CCTTCCEEECCSSCCSEE----CCCCT
T ss_pred             ccccccccccccccccccccc--------cccccccccccccccccccc----ccchhcccccccCccccc----cccCC
Confidence            334555556665555542211        12334444444443321100    001223333333333321    12234


Q ss_pred             CccEEECcCCcccccCCccCcCCCCCCEEecCCCcccccCChhhhhccCCceEEEcCCCccc
Q 048402          348 SLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFH  409 (677)
Q Consensus       348 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~  409 (677)
                      +|++|++++|+++ .+|.   .+++|+.|++++|+++ .+|.    .+++|++|++++|+++
T Consensus       285 ~L~~L~Ls~N~l~-~lp~---~~~~L~~L~L~~N~L~-~l~~----~~~~L~~L~L~~N~L~  337 (353)
T d1jl5a_         285 SLEELNVSNNKLI-ELPA---LPPRLERLIASFNHLA-EVPE----LPQNLKQLHVEYNPLR  337 (353)
T ss_dssp             TCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCS
T ss_pred             CCCEEECCCCccC-cccc---ccCCCCEEECCCCcCC-cccc----ccCCCCEEECcCCcCC
Confidence            5555555555554 2332   2345555555555554 3442    1334555555555544

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=1.7e-21  Score=205.53  Aligned_cols=393  Identities=19%  Similarity=0.157  Sum_probs=215.8

Q ss_pred             CcccEEEccCCCCceecCCccccCCCCCCEEecCCCCCCCc----cCchhhcCCCCCCEEEccCCcCCcccchhhhhccc
Q 048402            2 IHLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEG----RIPRSMASLCNLKSINLRGVHLSQEISEILNIFSG   77 (677)
Q Consensus         2 ~~L~~L~Ls~n~~~~~i~~~~~~~l~~L~~L~Ls~~~~~~~----~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~   77 (677)
                      ++|++||++++++++.--...+..++++++|+|+ +|.++.    .++.++..+++|++|||++|.+++.....+...-.
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~-~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~   80 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLD-DCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ   80 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEE-SSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeC-CCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHh
Confidence            4789999999999753213446678999999999 777763    44567889999999999999887543333332211


Q ss_pred             cCcCCccEEEcccCcCccc----cccccCCCCCCCEEECcCCccccCCCcC----C-CCCCCCCEEEcccccccccc---
Q 048402           78 CVSIELESLDLRSSSISGH----LTDQLGQFKNLDNLDLANNSIVGPIPQS----L-GHLSNLRVLQIYNNKLNGTL---  145 (677)
Q Consensus        78 ~~~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~-~~l~~L~~L~L~~n~i~~~l---  145 (677)
                      ....+|++|++++|+++..    ++..+..+++|++|++++|.+.......    + ...............+...-   
T Consensus        81 ~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~  160 (460)
T d1z7xw1          81 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP  160 (460)
T ss_dssp             STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred             cCCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhcc
Confidence            1222799999999998754    4567788999999999999876322111    1 12234445555444332110   


Q ss_pred             ChhhhhCCCCCCEEEeeccccceecCCC----C-CCCcCccEEEeecccCCCC----CChhccCCCCCCEEEccCCCCCC
Q 048402          146 SEIHFSNLTKLSWFRVGGNKLTLEVRHD----W-IPPFQLVALGFHNCYVGSR----FPQWLHSQKHLQYLNLLNSGMSD  216 (677)
Q Consensus       146 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~----~-~~~~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~i~~  216 (677)
                      -...+.....++.++++++.........    + ........+.+.++.+...    ....+...+.++.+++.+|.+..
T Consensus       161 ~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~  240 (460)
T d1z7xw1         161 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD  240 (460)
T ss_dssp             HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhccccc
Confidence            0113445667778887776543211100    0 1112333444444333211    11112234445555555554422


Q ss_pred             ccc----hHHHhccCCccEEECCCccCccccCCccccccccEEEcccCCCCCCCCCCCCCccEEEccCCcccccCChhHh
Q 048402          217 LFP----IRFLKSAFQLKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNNMSGPLPLISSNLVYLDLSNNSFSGSVSHYLC  292 (677)
Q Consensus       217 ~~~----~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~  292 (677)
                      ...    .........++.+++++|.+.........                ......+.++.+++++|.+++.....++
T Consensus       241 ~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~----------------~~l~~~~~l~~l~l~~n~i~~~~~~~l~  304 (460)
T d1z7xw1         241 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLC----------------RVLRAKESLKELSLAGNELGDEGARLLC  304 (460)
T ss_dssp             HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHH----------------HHHHHCTTCCEEECTTCCCHHHHHHHHH
T ss_pred             cccchhhccccccccccccccccccccccccccccc----------------ccccccccccccccccccccccccchhh
Confidence            111    11111223444555554444321100000                0000134566666666666543333332


Q ss_pred             hccC-CCCCcCeEecCCCCCcccCCc----ccccCCCCceecccCcccccc----CCcCcC-CCCCccEEECcCCccccc
Q 048402          293 YRIN-EPKSLIGLKLKDNSLQGEIPD----CWMSYQNLEILELSNNKFTGK----LPNSLG-SLTSLIWLLLGKNRLSGT  362 (677)
Q Consensus       293 ~~~~-~~~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~----~~~~~~-~l~~L~~L~l~~n~~~~~  362 (677)
                      ..+. ....|+.++++++.++.....    .+...++|++|+|++|++.+.    ++..+. ..+.|++|++++|.++..
T Consensus       305 ~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~  384 (460)
T d1z7xw1         305 ETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDS  384 (460)
T ss_dssp             HHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHH
T ss_pred             ccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChH
Confidence            2221 235677777777776643322    234456778888887777642    222232 355688888888877642


Q ss_pred             ----CCccCcCCCCCCEEecCCCcccccCChhhh----hccCCceEEEcCCCccccc
Q 048402          363 ----IPVSLKNCTALESLDVGENEFVGNIPTWTG----ERFSRMVVLILRSNNFHGP  411 (677)
Q Consensus       363 ----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~----~~l~~L~~L~L~~n~l~~~  411 (677)
                          +...+..+++|++|++++|+++......+.    .....|+.|++.+|.+...
T Consensus       385 ~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~  441 (460)
T d1z7xw1         385 SCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEE  441 (460)
T ss_dssp             HHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHH
T ss_pred             HHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHH
Confidence                334455678888888888877643332222    1234688888888877643

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.78  E-value=1.1e-16  Score=161.72  Aligned_cols=75  Identities=25%  Similarity=0.345  Sum_probs=53.4

Q ss_pred             cEEEcccCcccccCCcccCCCCCCcEEeccCCcceeecccccccCCCCcEEECCCCcccccCccccccCCCCCEEEcccC
Q 048402          493 KETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLSNN  572 (677)
Q Consensus       493 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N  572 (677)
                      ...++..+.+.+.    ...+++|++|++++|+++ .+|+.   +++|+.|++++|+|+ .+|+.   +++|++|++++|
T Consensus       267 ~~~~~~~~~~~~~----~~~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N  334 (353)
T d1jl5a_         267 YYLNASSNEIRSL----CDLPPSLEELNVSNNKLI-ELPAL---PPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYN  334 (353)
T ss_dssp             CEEECCSSCCSEE----CCCCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSS
T ss_pred             cccccccCccccc----cccCCCCCEEECCCCccC-ccccc---cCCCCEEECCCCcCC-ccccc---cCCCCEEECcCC
Confidence            4566666665532    234578888999998888 56653   568888899999888 56653   457888999999


Q ss_pred             cccccCCC
Q 048402          573 KLTGKIPS  580 (677)
Q Consensus       573 ~l~~~~p~  580 (677)
                      +++ .+|.
T Consensus       335 ~L~-~lp~  341 (353)
T d1jl5a_         335 PLR-EFPD  341 (353)
T ss_dssp             CCS-SCCC
T ss_pred             cCC-CCCc
Confidence            887 4554

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.74  E-value=1.4e-17  Score=156.66  Aligned_cols=203  Identities=21%  Similarity=0.289  Sum_probs=126.7

Q ss_pred             EecCCCCCcccCCcccccCCCCceecccCccccccCCcCcCCCCCccEEECcCCcccccCCccCcCCCCCCEEecCCCcc
Q 048402          304 LKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEF  383 (677)
Q Consensus       304 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l  383 (677)
                      ++++.+++++..  .+..+.+|+.|++.+|.++. + ..+..+++|+.|++++|++++..+  +..+++++.+++++|.+
T Consensus        24 ~~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~~-l-~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~   97 (227)
T d1h6ua2          24 IAAGKSNVTDTV--TQADLDGITTLSAFGTGVTT-I-EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPL   97 (227)
T ss_dssp             HHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCC
T ss_pred             HHhCCCCcCCcC--CHHHcCCcCEEECCCCCCCc-c-hhHhcCCCCcEeecCCceeecccc--ccccccccccccccccc
Confidence            344444444322  23455566666666666653 2 235566666666666666654322  55666666666666655


Q ss_pred             cccCChhhhhccCCceEEEcCCCcccccCCccccCCCCCCEEeCCCCcCCCCcCccccccccCccccccCcccCccCCCC
Q 048402          384 VGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLP  463 (677)
Q Consensus       384 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~  463 (677)
                      + .++. +. .+++|+.++++++...+.  ..+...+.++.+.++++.+....+                          
T Consensus        98 ~-~i~~-l~-~l~~L~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~--------------------------  146 (227)
T d1h6ua2          98 K-NVSA-IA-GLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNISP--------------------------  146 (227)
T ss_dssp             S-CCGG-GT-TCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCCGG--------------------------
T ss_pred             c-cccc-cc-cccccccccccccccccc--chhccccchhhhhchhhhhchhhh--------------------------
Confidence            4 3332 22 466666666666665532  234455667777776665532111                          


Q ss_pred             CCCcccccceeeEeecCCchhhhhhhccccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeecccccccCCCCcEE
Q 048402          464 LDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESI  543 (677)
Q Consensus       464 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L  543 (677)
                                            +...++|+.|++++|.+.+..  .++++++|++|++++|++++ ++ .++++++|++|
T Consensus       147 ----------------------~~~~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~~-l~-~l~~l~~L~~L  200 (227)
T d1h6ua2         147 ----------------------LAGLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISD-IS-PLASLPNLIEV  200 (227)
T ss_dssp             ----------------------GGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCCEE
T ss_pred             ----------------------hccccccccccccccccccch--hhcccccceecccCCCccCC-Ch-hhcCCCCCCEE
Confidence                                  122445577888888776432  37888999999999999884 44 37889999999


Q ss_pred             ECCCCcccccCccccccCCCCCEEEccc
Q 048402          544 DFSVNQLSGEIPQSMSNLMSLNHLNLSN  571 (677)
Q Consensus       544 ~Ls~N~l~~~~p~~l~~l~~L~~L~ls~  571 (677)
                      ++++|++++. + .++++++|+.|++++
T Consensus       201 ~Ls~N~lt~i-~-~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         201 HLKNNQISDV-S-PLANTSNLFIVTLTN  226 (227)
T ss_dssp             ECTTSCCCBC-G-GGTTCTTCCEEEEEE
T ss_pred             ECcCCcCCCC-c-ccccCCCCCEEEeeC
Confidence            9999999854 3 388899999999874

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=5.1e-20  Score=194.05  Aligned_cols=385  Identities=19%  Similarity=0.167  Sum_probs=223.5

Q ss_pred             CCCEEecCCCCCCCcc-CchhhcCCCCCCEEEccCCcCCcc----cchhhhhccccCcCCccEEEcccCcCccc----cc
Q 048402           28 SISRLDLSLNTGPEGR-IPRSMASLCNLKSINLRGVHLSQE----ISEILNIFSGCVSIELESLDLRSSSISGH----LT   98 (677)
Q Consensus        28 ~L~~L~Ls~~~~~~~~-~~~~l~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~~~~~~L~~L~L~~n~l~~~----~~   98 (677)
                      +|+.||++ ++.+++. +..-+..++++++|+|++|.++..    ++..+...+     +|++|+|++|.++..    +.
T Consensus         3 ~l~~ld~~-~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~-----~L~~LdLs~N~i~~~~~~~l~   76 (460)
T d1z7xw1           3 DIQSLDIQ-CEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNP-----ALAELNLRSNELGDVGVHCVL   76 (460)
T ss_dssp             EEEEEEEE-SCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCT-----TCCEEECTTCCCHHHHHHHHH
T ss_pred             CCCEEEee-CCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCC-----CCCEEECcCCcCChHHHHHHH
Confidence            57778887 5555532 234456677888888888877643    233445555     788888888777532    22


Q ss_pred             cccC-CCCCCCEEECcCCccccC----CCcCCCCCCCCCEEEccccccccccChhh---h-hCCCCCCEEEeecccccee
Q 048402           99 DQLG-QFKNLDNLDLANNSIVGP----IPQSLGHLSNLRVLQIYNNKLNGTLSEIH---F-SNLTKLSWFRVGGNKLTLE  169 (677)
Q Consensus        99 ~~~~-~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~i~~~l~~~~---~-~~l~~L~~L~l~~n~l~~~  169 (677)
                      +.+. ...+|++|++++|.++..    ++..+..+++|++|++++|.+...-....   + ...............+...
T Consensus        77 ~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~  156 (460)
T d1z7xw1          77 QGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAA  156 (460)
T ss_dssp             HTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGG
T ss_pred             HHHhcCCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchh
Confidence            2232 234677888877777533    33456677777777777777652111100   1 1111222222222111100


Q ss_pred             cCCCCCCCcCccEEEeecccCCCCCChhccCCCCCCEEEccCCCCCCccchH----HHhccCCccEEECCCccCccc---
Q 048402          170 VRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIR----FLKSAFQLKFLDLGLNQFHGQ---  242 (677)
Q Consensus       170 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~----~~~~~~~L~~L~Ls~n~l~~~---  242 (677)
                      ...                    .....+.....++.++++++.........    +.........+++..+.+...   
T Consensus       157 ~~~--------------------~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~  216 (460)
T d1z7xw1         157 SCE--------------------PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCR  216 (460)
T ss_dssp             GHH--------------------HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHH
T ss_pred             hhc--------------------ccccccccccccccccccccccccccccccccccccccccccccccccccccchhhh
Confidence            000                    00111233455666666655543221111    111122445566555544321   


Q ss_pred             --cCCccccccccEEEcccCCCCCC--------CCCCCCCccEEEccCCcccccCChhHhhccCCCCCcCeEecCCCCCc
Q 048402          243 --ITDLTKVTQLLFLSVHSNNMSGP--------LPLISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQ  312 (677)
Q Consensus       243 --~~~~~~~~~L~~L~l~~n~~~~~--------~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~  312 (677)
                        .......+.++.+++.+|.+...        .......++.+++++|.+...........+...+.++.+++++|.+.
T Consensus       217 ~~~~~l~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~  296 (460)
T d1z7xw1         217 DLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELG  296 (460)
T ss_dssp             HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCH
T ss_pred             cccccccccccccccchhhccccccccchhhccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence              11122335666677766654321        12225678999999998876544444444455789999999999987


Q ss_pred             ccCCccc-----ccCCCCceecccCccccccCCc----CcCCCCCccEEECcCCccccc----CCccC-cCCCCCCEEec
Q 048402          313 GEIPDCW-----MSYQNLEILELSNNKFTGKLPN----SLGSLTSLIWLLLGKNRLSGT----IPVSL-KNCTALESLDV  378 (677)
Q Consensus       313 ~~~~~~~-----~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~l~~n~~~~~----~~~~~-~~l~~L~~L~l  378 (677)
                      ......+     .....|+.+++++|.+......    .+...++|++|+|++|+++..    ++..+ ...+.|++|++
T Consensus       297 ~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~L  376 (460)
T d1z7xw1         297 DEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWL  376 (460)
T ss_dssp             HHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred             ccccchhhccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEEC
Confidence            4332222     2346899999999998754333    234567899999999998743    22233 34678999999


Q ss_pred             CCCccccc----CChhhhhccCCceEEEcCCCcccccCC----cccc-CCCCCCEEeCCCCcCCCCcCcc
Q 048402          379 GENEFVGN----IPTWTGERFSRMVVLILRSNNFHGPLP----TRLC-DLAFLQILDLADNNLFGTIPKC  439 (677)
Q Consensus       379 ~~n~l~~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~-~l~~L~~L~Ls~n~l~~~~p~~  439 (677)
                      ++|.+++.    ++..+. .+++|++|++++|+++....    ..+. +...|+.|++.+|.+.....+.
T Consensus       377 s~n~i~~~~~~~l~~~l~-~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~~~~~  445 (460)
T d1z7xw1         377 ADCDVSDSSCSSLAATLL-ANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDR  445 (460)
T ss_dssp             TTSCCCHHHHHHHHHHHH-HCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHH
T ss_pred             CCCCCChHHHHHHHHHHh-cCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHHHHHH
Confidence            99999743    223232 57999999999999974322    2232 3457999999999887544443

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.74  E-value=3.9e-18  Score=155.76  Aligned_cols=170  Identities=18%  Similarity=0.237  Sum_probs=103.5

Q ss_pred             CEEecCCCcccccCChhhhhccCCceEEEcCCCcccc-cCCccccCCCCCCEEeCCCCcCCCCcCccccccccCcccccc
Q 048402          374 ESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHG-PLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSF  452 (677)
Q Consensus       374 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~  452 (677)
                      ++++.++++++ .+|..+.   +++++|+|++|++++ ..+..|.++++|+.|++++|++.+..+..+..++.       
T Consensus        11 ~~v~Cs~~~L~-~iP~~lp---~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~-------   79 (192)
T d1w8aa_          11 TTVDCTGRGLK-EIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASH-------   79 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTT-------
T ss_pred             CEEEEeCCCcC-ccCCCCC---CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccc-------
Confidence            35566666665 5565432   456666666666654 23445566667777777776666554444444333       


Q ss_pred             CcccCccCCCCCCCcccccceeeEeecCCchhhhhhhccccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeeccc
Q 048402          453 TRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPE  532 (677)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~  532 (677)
                                                             |++|++++|++++..+..|.++++|++|+|++|+|++..|+
T Consensus        80 ---------------------------------------L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~  120 (192)
T d1w8aa_          80 ---------------------------------------IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPG  120 (192)
T ss_dssp             ---------------------------------------CCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTT
T ss_pred             ---------------------------------------cceeeeccccccccCHHHHhCCCcccccccCCccccccCHH
Confidence                                                   36667777777766667777777777888888877766677


Q ss_pred             ccccCCCCcEEECCCCcccccCccccccCCCCCEEEcccCcccccCCCCCCCCCcCcccccCCC
Q 048402          533 SIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLSNNKLTGKIPSSTQLQSFDASSFTGND  596 (677)
Q Consensus       533 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n~  596 (677)
                      +|..+++|++|+|++|.+....+ ...-...++.+.+..|.+.|..|.  .++.+...++..|+
T Consensus       121 ~f~~l~~L~~l~L~~N~~~~~~~-~~~~~~~l~~~~l~~~~~~c~~p~--~l~~~~l~~L~~n~  181 (192)
T d1w8aa_         121 SFEHLNSLTSLNLASNPFNCNCH-LAWFAEWLRKKSLNGGAARCGAPS--KVRDVQIKDLPHSE  181 (192)
T ss_dssp             SSTTCTTCCEEECTTCCBCCSGG-GHHHHHHHHHHCCSGGGCBBCSST--TTTTSBGGGSCTTT
T ss_pred             HhcCCcccccccccccccccccc-hHHHhhhhhhhcccCCCeEeCCCh--hhcCCEeeecCHhh
Confidence            77777778888887777763222 111112345555666777766665  34445555555543

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=1.5e-17  Score=158.52  Aligned_cols=201  Identities=14%  Similarity=0.092  Sum_probs=101.3

Q ss_pred             CcCeEecCCCCCcccCCcccccCCCCceecccCcccccc-CCcCcCCCCCccEEECcC-CcccccCCccCcCCCCCCEEe
Q 048402          300 SLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGK-LPNSLGSLTSLIWLLLGK-NRLSGTIPVSLKNCTALESLD  377 (677)
Q Consensus       300 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L~  377 (677)
                      ++++|++++|.++...+.+|.++++|++|++++|.+.+. .+.+|.+++.++++.+.. |.+....+..|.++++|++++
T Consensus        30 ~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~  109 (242)
T d1xwdc1          30 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL  109 (242)
T ss_dssp             CCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEE
T ss_pred             CCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccccc
Confidence            455555555555544444555666666666666655432 233455556666655543 445545555555666666666


Q ss_pred             cCCCcccccCChhhhhccCCceEEEcCCCcccccCCccccCCCCCCEEeCCCCcCCCCcCccccccccCccccccCcccC
Q 048402          378 VGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQ  457 (677)
Q Consensus       378 l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~  457 (677)
                      +++|.+....+......+..+..+...++.+....+..+.+++                                     
T Consensus       110 l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~-------------------------------------  152 (242)
T d1xwdc1         110 ISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLS-------------------------------------  152 (242)
T ss_dssp             EESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSB-------------------------------------
T ss_pred             cchhhhccccccccccccccccccccccccccccccccccccc-------------------------------------
Confidence            6666554211111111233333444444444333223333222                                     


Q ss_pred             ccCCCCCCCcccccceeeEeecCCchhhhhhhccccEEEcccCcccccCCcccCCCCCCcE-EeccCCcceeeccccccc
Q 048402          458 QYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQS-LNFSHNSFTGRIPESIGA  536 (677)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~-L~Ls~n~l~~~~p~~~~~  536 (677)
                                                      ..++.|++++|+++...+..+. ..++++ +++++|+++...+..|.+
T Consensus       153 --------------------------------~~l~~L~l~~n~l~~i~~~~~~-~~~l~~~~~l~~n~l~~l~~~~f~~  199 (242)
T d1xwdc1         153 --------------------------------FESVILWLNKNGIQEIHNCAFN-GTQLDELNLSDNNNLEELPNDVFHG  199 (242)
T ss_dssp             --------------------------------SSCEEEECCSSCCCEECTTTTT-TCCEEEEECTTCTTCCCCCTTTTTT
T ss_pred             --------------------------------ccceeeeccccccccccccccc-chhhhccccccccccccccHHHhcC
Confidence                                            1234555555555543333333 333333 345666666433445677


Q ss_pred             CCCCcEEECCCCcccccCccccccCCCCCEEEcc
Q 048402          537 MRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLS  570 (677)
Q Consensus       537 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls  570 (677)
                      +++|++|++++|+++...+..|.++++|+++++.
T Consensus       200 l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~  233 (242)
T d1xwdc1         200 ASGPVILDISRTRIHSLPSYGLENLKKLRARSTY  233 (242)
T ss_dssp             SCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEE
T ss_pred             CCCCCEEECCCCcCCccCHHHHcCCcccccCcCC
Confidence            7777777777777774444556666666555553

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=2.4e-17  Score=157.10  Aligned_cols=205  Identities=16%  Similarity=0.130  Sum_probs=139.6

Q ss_pred             ceecccCccccccCCcCcCCCCCccEEECcCCcccccCCccCcCCCCCCEEecCCCcccccCChhhhhccCCceEEEcCC
Q 048402          326 EILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRS  405 (677)
Q Consensus       326 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~  405 (677)
                      +.++.++..++ .+|..+.  +++++|++++|+++...+.+|.++++|++|++++|.+...++...+..+++++++.+..
T Consensus        11 ~~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~   87 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   87 (242)
T ss_dssp             SEEEEESCSCS-SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred             CEEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccc
Confidence            45555555555 4444332  35677777777777655566777777777777777766556655555677777777653


Q ss_pred             -CcccccCCccccCCCCCCEEeCCCCcCCCCcCccccccccCccccccCcccCccCCCCCCCcccccceeeEeecCCchh
Q 048402          406 -NNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIE  484 (677)
Q Consensus       406 -n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  484 (677)
                       |++....+..|.++++|+++++++|.+....+.  ..+.                                        
T Consensus        88 ~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~--~~~~----------------------------------------  125 (242)
T d1xwdc1          88 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDV--HKIH----------------------------------------  125 (242)
T ss_dssp             CTTCCEECTTSEECCTTCCEEEEESCCCCSCCCC--TTTC----------------------------------------
T ss_pred             cccccccccccccccccccccccchhhhcccccc--cccc----------------------------------------
Confidence             566666677788888888888888877532221  1111                                        


Q ss_pred             hhhhhccccEEEcccCcccccCCcccCCCC-CCcEEeccCCcceeecccccccCCCCcE-EECCCCcccccCccccccCC
Q 048402          485 YDEILNLVKETDVSRNNLTKSIPLEMTNLK-ATQSLNFSHNSFTGRIPESIGAMRSLES-IDFSVNQLSGEIPQSMSNLM  562 (677)
Q Consensus       485 ~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~-~L~~L~Ls~n~l~~~~p~~~~~l~~L~~-L~Ls~N~l~~~~p~~l~~l~  562 (677)
                         .++.+..+..+++.+....+..|.+++ .++.|++++|+++...+..+. .+++++ +++++|+++...++.|.+++
T Consensus       126 ---~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~-~~~l~~~~~l~~n~l~~l~~~~f~~l~  201 (242)
T d1xwdc1         126 ---SLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFN-GTQLDELNLSDNNNLEELPNDVFHGAS  201 (242)
T ss_dssp             ---BSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTTT-TCCEEEEECTTCTTCCCCCTTTTTTSC
T ss_pred             ---cccccccccccccccccccccccccccccceeeeccccccccccccccc-chhhhccccccccccccccHHHhcCCC
Confidence               123345666677777766667777765 799999999999965555554 455554 46788899865566789999


Q ss_pred             CCCEEEcccCcccccCCC
Q 048402          563 SLNHLNLSNNKLTGKIPS  580 (677)
Q Consensus       563 ~L~~L~ls~N~l~~~~p~  580 (677)
                      +|++|++++|+++. +|.
T Consensus       202 ~L~~L~Ls~N~l~~-l~~  218 (242)
T d1xwdc1         202 GPVILDISRTRIHS-LPS  218 (242)
T ss_dssp             CCSEEECTTSCCCC-CCS
T ss_pred             CCCEEECCCCcCCc-cCH
Confidence            99999999999984 443

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.70  E-value=1.2e-17  Score=152.37  Aligned_cols=177  Identities=17%  Similarity=0.175  Sum_probs=111.8

Q ss_pred             EEECcCCcccccCCccCcCCCCCCEEecCCCcccccCChhhhhccCCceEEEcCCCcccccCCccccCCCCCCEEeCCCC
Q 048402          351 WLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADN  430 (677)
Q Consensus       351 ~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n  430 (677)
                      .++.++++++ .+|..+.  +++++|+|++|++++.++...+..+++|+.|++++|.+.+..+..+..+++|++|++++|
T Consensus        12 ~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N   88 (192)
T d1w8aa_          12 TVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             EEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             EEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccc
Confidence            3444444444 2333221  345555555555554444444445666666666666666666666666677777777777


Q ss_pred             cCCCCcCccccccccCccccccCcccCccCCCCCCCcccccceeeEeecCCchhhhhhhccccEEEcccCcccccCCccc
Q 048402          431 NLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEM  510 (677)
Q Consensus       431 ~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l  510 (677)
                      ++....|..|.++++                                              |++|+|++|+|++..+..|
T Consensus        89 ~l~~l~~~~F~~l~~----------------------------------------------L~~L~L~~N~l~~i~~~~f  122 (192)
T d1w8aa_          89 KIKEISNKMFLGLHQ----------------------------------------------LKTLNLYDNQISCVMPGSF  122 (192)
T ss_dssp             CCCEECSSSSTTCTT----------------------------------------------CCEEECCSSCCCEECTTSS
T ss_pred             cccccCHHHHhCCCc----------------------------------------------ccccccCCccccccCHHHh
Confidence            766544444444433                                              3777777777777777888


Q ss_pred             CCCCCCcEEeccCCcceeecccccccCCCCcEEECCCCcccccCccccccCCCCCEEEcccCcccccCCC
Q 048402          511 TNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLSNNKLTGKIPS  580 (677)
Q Consensus       511 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~  580 (677)
                      ..+++|++|+|++|.+....+. ..-...++.+.+..+.++...|..+   ..++.++++.|.+.|..+.
T Consensus       123 ~~l~~L~~l~L~~N~~~~~~~~-~~~~~~l~~~~l~~~~~~c~~p~~l---~~~~l~~L~~n~l~C~~~~  188 (192)
T d1w8aa_         123 EHLNSLTSLNLASNPFNCNCHL-AWFAEWLRKKSLNGGAARCGAPSKV---RDVQIKDLPHSEFKCSSEN  188 (192)
T ss_dssp             TTCTTCCEEECTTCCBCCSGGG-HHHHHHHHHHCCSGGGCBBCSSTTT---TTSBGGGSCTTTCCCCCC-
T ss_pred             cCCcccccccccccccccccch-HHHhhhhhhhcccCCCeEeCCChhh---cCCEeeecCHhhCcCCCCC
Confidence            8899999999999988744322 1222346777788888887777654   4566788999999887654

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=2e-16  Score=146.41  Aligned_cols=165  Identities=19%  Similarity=0.311  Sum_probs=98.0

Q ss_pred             CCCccEEECcCCcccccCCccCcCCCCCCEEecCCCcccccCChhhhhccCCceEEEcCCCcccccCCccccCCCCCCEE
Q 048402          346 LTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQIL  425 (677)
Q Consensus       346 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  425 (677)
                      +.+|+.|++++|.++...  .+..+++|++|++++|+++ .++. + ..+++|++|++++|++++ ++ .+..+++|+.|
T Consensus        45 L~~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~-~l~~-~-~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L  117 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLT-DIKP-L-ANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSL  117 (210)
T ss_dssp             HHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCC-CCGG-G-TTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEE
T ss_pred             hcCccEEECcCCCCCCch--hHhhCCCCCEEeCCCcccc-Cccc-c-ccCccccccccccccccc-cc-ccccccccccc
Confidence            344555555555544221  2444555555555555554 2222 1 135555556665555553 22 35566666666


Q ss_pred             eCCCCcCCCCcCccccccccCccccccCcccCccCCCCCCCcccccceeeEeecCCchhhhhhhccccEEEcccCccccc
Q 048402          426 DLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKS  505 (677)
Q Consensus       426 ~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~  505 (677)
                      ++++|.+.. + ..+                                              ..++.++.+++++|.+++ 
T Consensus       118 ~l~~~~~~~-~-~~l----------------------------------------------~~l~~l~~l~~~~n~l~~-  148 (210)
T d1h6ta2         118 SLEHNGISD-I-NGL----------------------------------------------VHLPQLESLYLGNNKITD-  148 (210)
T ss_dssp             ECTTSCCCC-C-GGG----------------------------------------------GGCTTCCEEECCSSCCCC-
T ss_pred             ccccccccc-c-ccc----------------------------------------------cccccccccccccccccc-
Confidence            666665531 1 111                                              123344666777776653 


Q ss_pred             CCcccCCCCCCcEEeccCCcceeecccccccCCCCcEEECCCCcccccCccccccCCCCCEEEccc
Q 048402          506 IPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLSN  571 (677)
Q Consensus       506 ~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~  571 (677)
                       +..+..+++|+++++++|++++ ++ .+.++++|++|++++|+++ .+| .+..+++|++|++++
T Consensus       149 -~~~~~~l~~L~~l~l~~n~l~~-i~-~l~~l~~L~~L~Ls~N~i~-~l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         149 -ITVLSRLTKLDTLSLEDNQISD-IV-PLAGLTKLQNLYLSKNHIS-DLR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             -CGGGGGCTTCSEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCC-BCG-GGTTCTTCSEEEEEE
T ss_pred             -cccccccccccccccccccccc-cc-cccCCCCCCEEECCCCCCC-CCh-hhcCCCCCCEEEccC
Confidence             2346677888888888888874 33 3788888888888888887 444 488888888888864

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=3.9e-16  Score=146.70  Aligned_cols=203  Identities=22%  Similarity=0.334  Sum_probs=157.8

Q ss_pred             EEccCCCCceecCCccccCCCCCCEEecCCCCCCCccCchhhcCCCCCCEEEccCCcCCcccchhhhhccccCcCCccEE
Q 048402            7 LSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVSIELESL   86 (677)
Q Consensus         7 L~Ls~n~~~~~i~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~L~~L   86 (677)
                      +++..+.+++.+   .+..+.+|++|+++ ++.++. + ..+.++++|++|++++|.+++..+  +..++     +++++
T Consensus        24 ~~l~~~~~~d~~---~~~~l~~L~~L~l~-~~~i~~-l-~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~-----~l~~l   90 (227)
T d1h6ua2          24 IAAGKSNVTDTV---TQADLDGITTLSAF-GTGVTT-I-EGVQYLNNLIGLELKDNQITDLAP--LKNLT-----KITEL   90 (227)
T ss_dssp             HHTTCSSTTSEE---CHHHHHTCCEEECT-TSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCC-----SCCEE
T ss_pred             HHhCCCCcCCcC---CHHHcCCcCEEECC-CCCCCc-c-hhHhcCCCCcEeecCCceeecccc--ccccc-----ccccc
Confidence            456666666433   44567899999998 666664 4 358889999999999999886544  67777     89999


Q ss_pred             EcccCcCccccccccCCCCCCCEEECcCCccccCCCcCCCCCCCCCEEEccccccccccChhhhhCCCCCCEEEeecccc
Q 048402           87 DLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKL  166 (677)
Q Consensus        87 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~l~~~~~~~l~~L~~L~l~~n~l  166 (677)
                      ++++|.++. ++ .+.++++|++++++++...+.  ..+...+.++.+.++.+.+. ...  .+.++++|+.|++++|.+
T Consensus        91 ~~~~n~~~~-i~-~l~~l~~L~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~-~~~--~~~~~~~L~~L~l~~n~~  163 (227)
T d1h6ua2          91 ELSGNPLKN-VS-AIAGLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQIT-NIS--PLAGLTNLQYLSIGNAQV  163 (227)
T ss_dssp             ECCSCCCSC-CG-GGTTCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCC-CCG--GGGGCTTCCEEECCSSCC
T ss_pred             ccccccccc-cc-ccccccccccccccccccccc--chhccccchhhhhchhhhhc-hhh--hhcccccccccccccccc
Confidence            999998874 33 578899999999998887643  45677889999999888876 332  467888999999999887


Q ss_pred             ceecCCCCCCCcCccEEEeecccCCCCCChhccCCCCCCEEEccCCCCCCccchHHHhccCCccEEECCC
Q 048402          167 TLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGL  236 (677)
Q Consensus       167 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~  236 (677)
                      ....  .+..+++|+.|++++|++.+.  ..++.+++|++|++++|+++++.+   +..+++|+.|++++
T Consensus       164 ~~~~--~l~~l~~L~~L~Ls~n~l~~l--~~l~~l~~L~~L~Ls~N~lt~i~~---l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         164 SDLT--PLANLSKLTTLKADDNKISDI--SPLASLPNLIEVHLKNNQISDVSP---LANTSNLFIVTLTN  226 (227)
T ss_dssp             CCCG--GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECTTSCCCBCGG---GTTCTTCCEEEEEE
T ss_pred             ccch--hhcccccceecccCCCccCCC--hhhcCCCCCCEEECcCCcCCCCcc---cccCCCCCEEEeeC
Confidence            6443  367788999999999988753  348889999999999999988754   45688999999863

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.65  E-value=1.1e-15  Score=140.05  Aligned_cols=176  Identities=24%  Similarity=0.313  Sum_probs=133.7

Q ss_pred             EccCCCCceecCCccccCCCCCCEEecCCCCCCCccCchhhcCCCCCCEEEccCCcCCcccchhhhhccccCcCCccEEE
Q 048402            8 SLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVSIELESLD   87 (677)
Q Consensus         8 ~Ls~n~~~~~i~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~L~~L~   87 (677)
                      .++.+.+++.+   ....++++++|+++ ++.+.. + ..+..+++|++|++++|++++..+  ++.++     +|++|+
T Consensus        24 ~l~~~~~~~~~---~~~~l~~l~~L~l~-~~~i~~-l-~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~-----~L~~L~   90 (199)
T d2omxa2          24 VLGKTNVTDTV---SQTDLDQVTTLQAD-RLGIKS-I-DGVEYLNNLTQINFSNNQLTDITP--LKNLT-----KLVDIL   90 (199)
T ss_dssp             HTTCSSTTSEE---CHHHHTTCCEEECT-TSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCT-----TCCEEE
T ss_pred             HhCCCCCCCcc---CHHHhcCCCEEECC-CCCCCC-c-cccccCCCcCcCccccccccCccc--ccCCc-----cccccc
Confidence            45566666443   23457888899998 666553 3 357888899999999998886543  77777     899999


Q ss_pred             cccCcCccccccccCCCCCCCEEECcCCccccCCCcCCCCCCCCCEEEccccccccccChhhhhCCCCCCEEEeeccccc
Q 048402           88 LRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLT  167 (677)
Q Consensus        88 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~l~~~~~~~l~~L~~L~l~~n~l~  167 (677)
                      +++|.+... + .+.++++|++|++++|.+...  ..+..+++|+.|++++|.+. .++  .+..+++|+.|++.+|.++
T Consensus        91 l~~n~~~~~-~-~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~-~~~--~l~~~~~L~~L~l~~n~l~  163 (199)
T d2omxa2          91 MNNNQIADI-T-PLANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTIS-DIS--ALSGLTSLQQLNFSSNQVT  163 (199)
T ss_dssp             CCSSCCCCC-G-GGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCC-CCG--GGTTCTTCSEEECCSSCCC
T ss_pred             ccccccccc-c-ccccccccccccccccccccc--cccchhhhhHHhhhhhhhhc-ccc--ccccccccccccccccccc
Confidence            999888743 3 478889999999988887643  45778889999999998886 554  4788889999999998887


Q ss_pred             eecCCCCCCCcCccEEEeecccCCCCCChhccCCCCCCEE
Q 048402          168 LEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYL  207 (677)
Q Consensus       168 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L  207 (677)
                      +..  .+..+++|+.|++++|+++..  ..++.+++|++|
T Consensus       164 ~l~--~l~~l~~L~~L~ls~N~i~~i--~~l~~L~~L~~L  199 (199)
T d2omxa2         164 DLK--PLANLTTLERLDISSNKVSDI--SVLAKLTNLESL  199 (199)
T ss_dssp             CCG--GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEE
T ss_pred             CCc--cccCCCCCCEEECCCCCCCCC--ccccCCCCCCcC
Confidence            653  477888999999999988753  357888888876

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.64  E-value=1.7e-15  Score=138.83  Aligned_cols=182  Identities=19%  Similarity=0.258  Sum_probs=144.2

Q ss_pred             CCCCEEecCCCCCCCccCchhhcCCCCCCEEEccCCcCCcccchhhhhccccCcCCccEEEcccCcCccccccccCCCCC
Q 048402           27 TSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKN  106 (677)
Q Consensus        27 ~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~  106 (677)
                      ++...+.++ .+.+++.+  ....++++++|+++++.++..  +.+..++     +|++|++++|++++..+  ++++++
T Consensus        18 ~~~i~~~l~-~~~~~~~~--~~~~l~~l~~L~l~~~~i~~l--~~l~~l~-----nL~~L~Ls~N~l~~~~~--l~~l~~   85 (199)
T d2omxa2          18 AEKMKTVLG-KTNVTDTV--SQTDLDQVTTLQADRLGIKSI--DGVEYLN-----NLTQINFSNNQLTDITP--LKNLTK   85 (199)
T ss_dssp             HHHHHHHTT-CSSTTSEE--CHHHHTTCCEEECTTSCCCCC--TTGGGCT-----TCCEEECCSSCCCCCGG--GTTCTT
T ss_pred             HHHHHHHhC-CCCCCCcc--CHHHhcCCCEEECCCCCCCCc--cccccCC-----CcCcCccccccccCccc--ccCCcc
Confidence            334445566 44455443  235678999999999998853  3467777     99999999999997544  899999


Q ss_pred             CCEEECcCCccccCCCcCCCCCCCCCEEEccccccccccChhhhhCCCCCCEEEeeccccceecCCCCCCCcCccEEEee
Q 048402          107 LDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQLVALGFH  186 (677)
Q Consensus       107 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~  186 (677)
                      |++|++++|.+... + .+.++++|+.|++++|.+. .++  .+.++++|+.+++++|.+...  ..+..+++++.|++.
T Consensus        86 L~~L~l~~n~~~~~-~-~l~~l~~L~~L~l~~~~~~-~~~--~~~~l~~L~~L~l~~n~l~~~--~~l~~~~~L~~L~l~  158 (199)
T d2omxa2          86 LVDILMNNNQIADI-T-PLANLTNLTGLTLFNNQIT-DID--PLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLNFS  158 (199)
T ss_dssp             CCEEECCSSCCCCC-G-GGTTCTTCSEEECCSSCCC-CCG--GGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECC
T ss_pred             cccccccccccccc-c-ccccccccccccccccccc-ccc--ccchhhhhHHhhhhhhhhccc--ccccccccccccccc
Confidence            99999999998743 3 5889999999999999886 443  478899999999999998753  357888999999999


Q ss_pred             cccCCCCCChhccCCCCCCEEEccCCCCCCccchHHHhccCCccEE
Q 048402          187 NCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFL  232 (677)
Q Consensus       187 ~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L  232 (677)
                      +|.+.+..  .++++++|++|++++|+++++.+   +..+++|+.|
T Consensus       159 ~n~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~---l~~L~~L~~L  199 (199)
T d2omxa2         159 SNQVTDLK--PLANLTTLERLDISSNKVSDISV---LAKLTNLESL  199 (199)
T ss_dssp             SSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG---GGGCTTCSEE
T ss_pred             cccccCCc--cccCCCCCCEEECCCCCCCCCcc---ccCCCCCCcC
Confidence            99987643  48899999999999999988632   3557788765

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.64  E-value=1.5e-15  Score=140.42  Aligned_cols=140  Identities=25%  Similarity=0.277  Sum_probs=66.3

Q ss_pred             CccEEEcccCcCccccccccCCCCCCCEEECcCCccccCCCcCCCCCCCCCEEEccccccccccChhhhhCCCCCCEEEe
Q 048402           82 ELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRV  161 (677)
Q Consensus        82 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~l~~~~~~~l~~L~~L~l  161 (677)
                      +|++|++++|.+++..  .++.+++|++|++++|.++. ++ .+..+++|+.|++++|.+. .++  .+.+++.++.+++
T Consensus        69 ~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~~~~~-~~~--~l~~l~~l~~l~~  141 (210)
T d1h6ta2          69 NVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGIS-DIN--GLVHLPQLESLYL  141 (210)
T ss_dssp             TCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCC-CCG--GGGGCTTCCEEEC
T ss_pred             CCCEEeCCCccccCcc--ccccCccccccccccccccc-cc-ccccccccccccccccccc-ccc--ccccccccccccc
Confidence            4444444444444322  13444444444444444442 22 3444444444444444443 222  2444444444444


Q ss_pred             eccccceecCCCCCCCcCccEEEeecccCCCCCChhccCCCCCCEEEccCCCCCCccchHHHhccCCccEEECC
Q 048402          162 GGNKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLG  235 (677)
Q Consensus       162 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls  235 (677)
                      ++|.++..  ..+..+++|+.+++++|.+.+..  .+.++++|++|++++|.++++.  . +..+++|++|+++
T Consensus       142 ~~n~l~~~--~~~~~l~~L~~l~l~~n~l~~i~--~l~~l~~L~~L~Ls~N~i~~l~--~-l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         142 GNNKITDI--TVLSRLTKLDTLSLEDNQISDIV--PLAGLTKLQNLYLSKNHISDLR--A-LAGLKNLDVLELF  208 (210)
T ss_dssp             CSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCBCG--G-GTTCTTCSEEEEE
T ss_pred             cccccccc--ccccccccccccccccccccccc--cccCCCCCCEEECCCCCCCCCh--h-hcCCCCCCEEEcc
Confidence            44444321  12233444555555555444321  2556666777777777666542  1 3446667777664

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=1.7e-15  Score=147.11  Aligned_cols=226  Identities=18%  Similarity=0.132  Sum_probs=135.1

Q ss_pred             cEEEccCCcccccCChhHhhccCCCCCcCeEecCCCCCcccCCcccccCCCCceecccCcccccc-CCcCcCCCCCccEE
Q 048402          274 VYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGK-LPNSLGSLTSLIWL  352 (677)
Q Consensus       274 ~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L  352 (677)
                      +.+|++++.+.......+..     .....+.+.......... ......+|++||+++|.++.. +...+..+++|++|
T Consensus         3 ~~lDLs~~~l~~~~l~~l~~-----~~~~~lrl~~~~~~~~~~-~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L   76 (284)
T d2astb2           3 QTLDLTGKNLHPDVTGRLLS-----QGVIAFRCPRSFMDQPLA-EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL   76 (284)
T ss_dssp             SEEECTTCBCCHHHHHHHHH-----TTCSEEECTTCEECSCCC-SCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred             CEEECCCCCCCchHHHHHHh-----ccceEeeccccccccchh-hhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccc
Confidence            36777776664332222221     234455665554442222 233456888888888877643 34456778888888


Q ss_pred             ECcCCcccccCCccCcCCCCCCEEecCCC-cccccCChhhhhccCCceEEEcCCCc-cccc-CCccc-cCCCCCCEEeCC
Q 048402          353 LLGKNRLSGTIPVSLKNCTALESLDVGEN-EFVGNIPTWTGERFSRMVVLILRSNN-FHGP-LPTRL-CDLAFLQILDLA  428 (677)
Q Consensus       353 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~~-~~~~~-~~l~~L~~L~Ls  428 (677)
                      ++++|.++...+..+..+++|++|++++| .+++..-..+...+++|++|++++|. ++.. +...+ ..+++|+.|+++
T Consensus        77 ~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~  156 (284)
T d2astb2          77 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS  156 (284)
T ss_dssp             ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred             cccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhc
Confidence            88888887666677778888888888886 44422222333467888888888763 3311 11122 234678888877


Q ss_pred             CCcCCCCcCccccccccCccccccCcccCccCCCCCCCcccccceeeEeecCCchhhhhhhccccEEEcccC-cccccCC
Q 048402          429 DNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRN-NLTKSIP  507 (677)
Q Consensus       429 ~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~  507 (677)
                      ++...  +.+                                         .........+++|++|++++| .+++...
T Consensus       157 ~~~~~--i~~-----------------------------------------~~l~~l~~~~~~L~~L~L~~~~~itd~~~  193 (284)
T d2astb2         157 GYRKN--LQK-----------------------------------------SDLSTLVRRCPNLVHLDLSDSVMLKNDCF  193 (284)
T ss_dssp             SCGGG--SCH-----------------------------------------HHHHHHHHHCTTCSEEECTTCTTCCGGGG
T ss_pred             ccccc--ccc-----------------------------------------ccccccccccccccccccccccCCCchhh
Confidence            65210  000                                         001122234566777777765 3565556


Q ss_pred             cccCCCCCCcEEeccCC-cceeecccccccCCCCcEEECCCC
Q 048402          508 LEMTNLKATQSLNFSHN-SFTGRIPESIGAMRSLESIDFSVN  548 (677)
Q Consensus       508 ~~l~~l~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~L~Ls~N  548 (677)
                      ..+..+++|++|++++| .+++.....++++++|++|+++++
T Consensus       194 ~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         194 QEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             GGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             hhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            66677777777777774 455555556667777777777776

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=6.9e-15  Score=142.74  Aligned_cols=61  Identities=21%  Similarity=0.176  Sum_probs=31.9

Q ss_pred             cCCCCceecccCc-cccccCCcCcCCCCCccEEECcCC-cccccCCccCcCCCCCCEEecCCC
Q 048402          321 SYQNLEILELSNN-KFTGKLPNSLGSLTSLIWLLLGKN-RLSGTIPVSLKNCTALESLDVGEN  381 (677)
Q Consensus       321 ~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~~~~~~l~~L~~L~l~~n  381 (677)
                      .+++|++|++++| .+++.....+..+++|++|++++| .++......+..+++|+.|+++++
T Consensus       173 ~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         173 RCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             HCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             ccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            3444555555443 244344444555555666666554 344333344556666666666665

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.47  E-value=7.7e-15  Score=147.28  Aligned_cols=88  Identities=14%  Similarity=0.268  Sum_probs=59.3

Q ss_pred             hccccEEEcccCccccc----CCcccCCCCCCcEEeccCCcceeeccc----cccc--CCCCcEEECCCCccccc----C
Q 048402          489 LNLVKETDVSRNNLTKS----IPLEMTNLKATQSLNFSHNSFTGRIPE----SIGA--MRSLESIDFSVNQLSGE----I  554 (677)
Q Consensus       489 l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~~p~----~~~~--l~~L~~L~Ls~N~l~~~----~  554 (677)
                      .++|+.|++++|.++..    +...+..+++|++|+|++|.+.+.-..    .+..  .+.|++|++++|+|+..    +
T Consensus       214 ~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l  293 (344)
T d2ca6a1         214 CQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTL  293 (344)
T ss_dssp             CTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHH
T ss_pred             hhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHH
Confidence            45567777777776532    344567788888888888888754222    2322  35788999999988643    2


Q ss_pred             ccccc-cCCCCCEEEcccCcccc
Q 048402          555 PQSMS-NLMSLNHLNLSNNKLTG  576 (677)
Q Consensus       555 p~~l~-~l~~L~~L~ls~N~l~~  576 (677)
                      ...+. +.+.|++|++++|++..
T Consensus       294 ~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         294 KTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             HHHHHHHCTTCCEEECTTSBSCT
T ss_pred             HHHHHccCCCCCEEECCCCcCCC
Confidence            23332 56789999999998853

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=7.8e-14  Score=122.12  Aligned_cols=130  Identities=18%  Similarity=0.166  Sum_probs=95.3

Q ss_pred             cccCCCCCCEEecCCCCCCCccCchhhcCCCCCCEEEccCCcCCcccchhhhhccccCcCCccEEEcccCcCcccccccc
Q 048402           22 ALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQL  101 (677)
Q Consensus        22 ~~~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~~~~~  101 (677)
                      .|.++.++++|+|+ ++.++. ++..+..+++|++|++++|.++.. + .+..++     +|++|++++|.++...+..+
T Consensus        13 ~~~n~~~lr~L~L~-~n~I~~-i~~~~~~l~~L~~L~Ls~N~i~~l-~-~~~~l~-----~L~~L~ls~N~i~~l~~~~~   83 (162)
T d1a9na_          13 QYTNAVRDRELDLR-GYKIPV-IENLGATLDQFDAIDFSDNEIRKL-D-GFPLLR-----RLKTLLVNNNRICRIGEGLD   83 (162)
T ss_dssp             EEECTTSCEEEECT-TSCCCS-CCCGGGGTTCCSEEECCSSCCCEE-C-CCCCCS-----SCCEEECCSSCCCEECSCHH
T ss_pred             hccCcCcCcEEECC-CCCCCc-cCccccccccCCEEECCCCCCCcc-C-CcccCc-----chhhhhcccccccCCCcccc
Confidence            46677788888888 666553 455667788888888888888754 2 356666     78888888888886656566


Q ss_pred             CCCCCCCEEECcCCccccCCC-cCCCCCCCCCEEEccccccccccCh---hhhhCCCCCCEEEe
Q 048402          102 GQFKNLDNLDLANNSIVGPIP-QSLGHLSNLRVLQIYNNKLNGTLSE---IHFSNLTKLSWFRV  161 (677)
Q Consensus       102 ~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~i~~~l~~---~~~~~l~~L~~L~l  161 (677)
                      ..+++|++|++++|.++.... ..+..+++|++|++++|.++ ..+.   ..+..+++|+.||-
T Consensus        84 ~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~-~~~~~r~~~i~~lp~L~~LD~  146 (162)
T d1a9na_          84 QALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDF  146 (162)
T ss_dssp             HHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETT
T ss_pred             ccccccccceeccccccccccccccccccccchhhcCCCccc-cccchHHHHHHHCCCcCeeCC
Confidence            778888888888888874321 45778888888888888886 4442   35778888888873

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.44  E-value=3.2e-13  Score=112.17  Aligned_cols=101  Identities=21%  Similarity=0.336  Sum_probs=47.0

Q ss_pred             EEEccCCcCCcccchhhhhccccCcCCccEEEcccCcCccccccccCCCCCCCEEECcCCccccCCCcCCCCCCCCCEEE
Q 048402           56 SINLRGVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQ  135 (677)
Q Consensus        56 ~L~l~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  135 (677)
                      +|++++|+++.. + .++.+.     +|++|++++|.++. +|+.+..+++|++|++++|.++. +| .++.+++|++|+
T Consensus         2 ~L~Ls~n~l~~l-~-~l~~l~-----~L~~L~ls~N~l~~-lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~   71 (124)
T d1dcea3           2 VLHLAHKDLTVL-C-HLEQLL-----LVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELL   71 (124)
T ss_dssp             EEECTTSCCSSC-C-CGGGGT-----TCCEEECCSSCCCC-CCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEE
T ss_pred             EEEcCCCCCCCC-c-ccccCC-----CCCEEECCCCccCc-chhhhhhhhcccccccccccccc-cC-ccccccccCeEE
Confidence            445555554422 2 134444     45555555555542 33344555555555555555542 22 345555555555


Q ss_pred             ccccccccccCh-hhhhCCCCCCEEEeeccccc
Q 048402          136 IYNNKLNGTLSE-IHFSNLTKLSWFRVGGNKLT  167 (677)
Q Consensus       136 L~~n~i~~~l~~-~~~~~l~~L~~L~l~~n~l~  167 (677)
                      +++|++. .++. ..+..+++|+.+++++|.++
T Consensus        72 l~~N~i~-~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          72 LCNNRLQ-QSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             CCSSCCC-SSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             CCCCccC-CCCCchhhcCCCCCCEEECCCCcCC
Confidence            5555554 2221 23445555555555555443

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.44  E-value=4.5e-14  Score=141.60  Aligned_cols=236  Identities=20%  Similarity=0.199  Sum_probs=133.4

Q ss_pred             cccCCCCCCEEecCCCCCCCc----cCchhhcCCCCCCEEEccCCcCCcc---cchh-------hhhccccCcCCccEEE
Q 048402           22 ALGNLTSISRLDLSLNTGPEG----RIPRSMASLCNLKSINLRGVHLSQE---ISEI-------LNIFSGCVSIELESLD   87 (677)
Q Consensus        22 ~~~~l~~L~~L~Ls~~~~~~~----~~~~~l~~l~~L~~L~l~~n~l~~~---~~~~-------~~~l~~~~~~~L~~L~   87 (677)
                      .+...+.|+.|+|+ ++.+..    .+...+...++|+.++++++.....   .+..       +...+     +|++|+
T Consensus        26 ~L~~~~~l~~L~Ls-~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~-----~L~~L~   99 (344)
T d2ca6a1          26 VLLEDDSVKEIVLS-GNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCP-----KLHTVR   99 (344)
T ss_dssp             HHHHCSCCCEEECT-TSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCT-----TCCEEE
T ss_pred             HHhhCCCCCEEECc-CCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCC-----Cccccc
Confidence            34456667777776 444432    1233455566677777666543211   1111       12223     577777


Q ss_pred             cccCcCccc----cccccCCCCCCCEEECcCCccccCCCcC-------------CCCCCCCCEEEccccccccc----cC
Q 048402           88 LRSSSISGH----LTDQLGQFKNLDNLDLANNSIVGPIPQS-------------LGHLSNLRVLQIYNNKLNGT----LS  146 (677)
Q Consensus        88 L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~-------------~~~l~~L~~L~L~~n~i~~~----l~  146 (677)
                      +++|.++..    +...+..+++|++|++++|.+.......             ....+.|+.+++++|.+...    +.
T Consensus       100 L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~  179 (344)
T d2ca6a1         100 LSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWA  179 (344)
T ss_dssp             CCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHH
T ss_pred             ccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeeccccccccccccccc
Confidence            777766543    2333445666777777776653211000             12445677777777666411    11


Q ss_pred             hhhhhCCCCCCEEEeecccccee-----cCCCCCCCcCccEEEeecccCCCC----CChhccCCCCCCEEEccCCCCCCc
Q 048402          147 EIHFSNLTKLSWFRVGGNKLTLE-----VRHDWIPPFQLVALGFHNCYVGSR----FPQWLHSQKHLQYLNLLNSGMSDL  217 (677)
Q Consensus       147 ~~~~~~l~~L~~L~l~~n~l~~~-----~~~~~~~~~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~i~~~  217 (677)
                      . .+...+.|+.|++++|.+...     ....+...++|+.|++++|.++..    +...+..+++|++|++++|.+++.
T Consensus       180 ~-~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~  258 (344)
T d2ca6a1         180 K-TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSAR  258 (344)
T ss_dssp             H-HHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHH
T ss_pred             c-hhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCch
Confidence            1 345566777777777766532     233455666777777777765432    334566778888888888888765


Q ss_pred             cchHHHh-----ccCCccEEECCCccCccc-----cCCcc-ccccccEEEcccCCCCC
Q 048402          218 FPIRFLK-----SAFQLKFLDLGLNQFHGQ-----ITDLT-KVTQLLFLSVHSNNMSG  264 (677)
Q Consensus       218 ~~~~~~~-----~~~~L~~L~Ls~n~l~~~-----~~~~~-~~~~L~~L~l~~n~~~~  264 (677)
                      ....+..     ..+.|++|++++|.+...     ...+. ..+.|+.|++++|.+..
T Consensus       259 g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         259 GAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             HHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             hhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence            4444432     124688888888887642     11121 34678888888888764

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=1.1e-13  Score=121.03  Aligned_cols=126  Identities=15%  Similarity=0.154  Sum_probs=76.5

Q ss_pred             CCCCcCeEecCCCCCcccCCcccccCCCCceecccCccccccCCcCcCCCCCccEEECcCCcccccCCccCcCCCCCCEE
Q 048402          297 EPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESL  376 (677)
Q Consensus       297 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L  376 (677)
                      ++..+++|++++|+++. ++..+..+++|+.|++++|.++..  +.|..+++|++|++++|+++...+..+..+++|++|
T Consensus        16 n~~~lr~L~L~~n~I~~-i~~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L   92 (162)
T d1a9na_          16 NAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL   92 (162)
T ss_dssp             CTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred             CcCcCcEEECCCCCCCc-cCccccccccCCEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCccccccccccccc
Confidence            34566677777777663 355556667777777777777633  236667777777777777765555555667777777


Q ss_pred             ecCCCcccccCCh-hhhhccCCceEEEcCCCcccccC---CccccCCCCCCEEe
Q 048402          377 DVGENEFVGNIPT-WTGERFSRMVVLILRSNNFHGPL---PTRLCDLAFLQILD  426 (677)
Q Consensus       377 ~l~~n~l~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~---~~~~~~l~~L~~L~  426 (677)
                      ++++|++. .++. .....+++|++|++++|.++...   +..+..+++|++||
T Consensus        93 ~L~~N~i~-~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          93 ILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             ECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             eecccccc-ccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            77777665 3332 12235666666777666665321   12355566666665

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.43  E-value=3.6e-13  Score=111.85  Aligned_cols=83  Identities=25%  Similarity=0.375  Sum_probs=53.5

Q ss_pred             cccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeecccccccCCCCcEEECCCCcccccC-ccccccCCCCCEEEc
Q 048402          491 LVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEI-PQSMSNLMSLNHLNL  569 (677)
Q Consensus       491 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~l  569 (677)
                      .|++||+++|+++ .+|..++.+++|++|++++|.+++ +| .++.+++|++|++++|+++... ...+..+++|++|++
T Consensus        21 ~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l   97 (124)
T d1dcea3          21 LVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNL   97 (124)
T ss_dssp             TCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEEC
T ss_pred             CCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCCccCCCCCchhhcCCCCCCEEEC
Confidence            3466666666665 345566677777777777777763 33 3667777777777777776432 245666777777777


Q ss_pred             ccCcccc
Q 048402          570 SNNKLTG  576 (677)
Q Consensus       570 s~N~l~~  576 (677)
                      ++|+++.
T Consensus        98 ~~N~i~~  104 (124)
T d1dcea3          98 QGNSLCQ  104 (124)
T ss_dssp             TTSGGGG
T ss_pred             CCCcCCc
Confidence            7777654

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=5.7e-12  Score=109.23  Aligned_cols=88  Identities=18%  Similarity=0.216  Sum_probs=71.6

Q ss_pred             ccccEEEcccC-cccccCCcccCCCCCCcEEeccCCcceeecccccccCCCCcEEECCCCcccccCccccccCCCCCEEE
Q 048402          490 NLVKETDVSRN-NLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLN  568 (677)
Q Consensus       490 ~~L~~L~Ls~n-~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  568 (677)
                      +++++|++++| .++...+..|.++++|+.|+|++|+|+...|.+|.++++|++|+|++|+++...++.|.. .+|+.|+
T Consensus        31 ~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~-~~l~~L~  109 (156)
T d2ifga3          31 ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQG-LSLQELV  109 (156)
T ss_dssp             SCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCS-CCCCEEE
T ss_pred             cccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCcccChhhhcc-ccccccc
Confidence            34577777655 477666778999999999999999999877888999999999999999999554455544 4799999


Q ss_pred             cccCcccccC
Q 048402          569 LSNNKLTGKI  578 (677)
Q Consensus       569 ls~N~l~~~~  578 (677)
                      |++|++.|.+
T Consensus       110 L~~Np~~C~C  119 (156)
T d2ifga3         110 LSGNPLHCSC  119 (156)
T ss_dssp             CCSSCCCCCG
T ss_pred             cCCCcccCCc
Confidence            9999998765

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=1.4e-11  Score=106.71  Aligned_cols=110  Identities=17%  Similarity=0.173  Sum_probs=90.3

Q ss_pred             ccEEEcccCcccccCCcccCCCCCCcEEeccCC-cceeecccccccCCCCcEEECCCCcccccCccccccCCCCCEEEcc
Q 048402          492 VKETDVSRNNLTKSIPLEMTNLKATQSLNFSHN-SFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLS  570 (677)
Q Consensus       492 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls  570 (677)
                      .+.++++++.+. ..|..+..+++|++|++++| .++...+++|.++++|+.|++++|+|+.+.|.+|..+++|++|+|+
T Consensus        10 ~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls   88 (156)
T d2ifga3          10 SSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (156)
T ss_dssp             SSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceecc
Confidence            367899998888 56778999999999999876 4887777889999999999999999998889999999999999999


Q ss_pred             cCcccccCCCCCCCCCcCcccccCCCCCCCCCCCCCC
Q 048402          571 NNKLTGKIPSSTQLQSFDASSFTGNDLCGAPLPKNCA  607 (677)
Q Consensus       571 ~N~l~~~~p~~~~~~~l~~~~~~~n~l~~~~~~~~c~  607 (677)
                      +|+++...+.......+..+++     .++|+.|+|.
T Consensus        89 ~N~l~~l~~~~~~~~~l~~L~L-----~~Np~~C~C~  120 (156)
T d2ifga3          89 FNALESLSWKTVQGLSLQELVL-----SGNPLHCSCA  120 (156)
T ss_dssp             SSCCSCCCSTTTCSCCCCEEEC-----CSSCCCCCGG
T ss_pred             CCCCcccChhhhcccccccccc-----CCCcccCCch
Confidence            9999965554433334555544     5567888884

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.24  E-value=1.8e-13  Score=124.20  Aligned_cols=134  Identities=24%  Similarity=0.288  Sum_probs=101.7

Q ss_pred             CCCCCEEecCCCCCCCccCchhhcCCCCCCEEEccCCcCCcccchhhhhccccCcCCccEEEcccCcCccccccccCCCC
Q 048402           26 LTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFK  105 (677)
Q Consensus        26 l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~  105 (677)
                      ...++.+++++.......++.++..+++|++|++++|.|+.. + .+..++     +|++|++++|.++. ++..+..++
T Consensus        22 ~~~~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~I~~i-~-~l~~l~-----~L~~L~Ls~N~i~~-i~~~~~~~~   93 (198)
T d1m9la_          22 ATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI-S-SLSGME-----NLRILSLGRNLIKK-IENLDAVAD   93 (198)
T ss_dssp             CTTCSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEEESCC-C-CHHHHT-----TCCEEECCEEEECS-CSSHHHHHH
T ss_pred             ccccceeeeecccCchhhhhhHHhcccccceeECcccCCCCc-c-cccCCc-----cccChhhccccccc-ccccccccc
Confidence            455677777743333455677889999999999999988854 3 477788     89999999998874 455555567


Q ss_pred             CCCEEECcCCccccCCCcCCCCCCCCCEEEccccccccccCh-hhhhCCCCCCEEEeeccccceec
Q 048402          106 NLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSE-IHFSNLTKLSWFRVGGNKLTLEV  170 (677)
Q Consensus       106 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~l~~-~~~~~l~~L~~L~l~~n~l~~~~  170 (677)
                      +|++|++++|.++..  ..+..+++|++|++++|+++ .++. ..+..+++|+.|++++|.+....
T Consensus        94 ~L~~L~l~~N~i~~l--~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~L~~N~l~~~~  156 (198)
T d1m9la_          94 TLEELWISYNQIASL--SGIEKLVNLRVLYMSNNKIT-NWGEIDKLAALDKLEDLLLAGNPLYNDY  156 (198)
T ss_dssp             HCCEEECSEEECCCH--HHHHHHHHSSEEEESEEECC-CHHHHHHHTTTTTCSEEEECSSHHHHHH
T ss_pred             ccccccccccccccc--ccccccccccccccccchhc-cccccccccCCCccceeecCCCccccCc
Confidence            899999999988743  35778889999999999887 5443 36788899999999998876543

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.21  E-value=4.3e-13  Score=121.75  Aligned_cols=76  Identities=21%  Similarity=0.276  Sum_probs=41.4

Q ss_pred             cccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeecc-cccccCCCCcEEECCCCcccccCccc----------cc
Q 048402          491 LVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIP-ESIGAMRSLESIDFSVNQLSGEIPQS----------MS  559 (677)
Q Consensus       491 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~----------l~  559 (677)
                      .|+.|++++|+++..  ..+..+++|+.|++++|+++.... ..+..+++|+.|++++|++....+..          +.
T Consensus        94 ~L~~L~l~~N~i~~l--~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~  171 (198)
T d1m9la_          94 TLEELWISYNQIASL--SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVK  171 (198)
T ss_dssp             HCCEEECSEEECCCH--HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHH
T ss_pred             ccccccccccccccc--ccccccccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHH
Confidence            345556666655532  235556666666666666653211 34566666666666666665433321          44


Q ss_pred             cCCCCCEEE
Q 048402          560 NLMSLNHLN  568 (677)
Q Consensus       560 ~l~~L~~L~  568 (677)
                      .+++|+.||
T Consensus       172 ~lp~L~~LD  180 (198)
T d1m9la_         172 RLPNLKKLD  180 (198)
T ss_dssp             HCSSCCEES
T ss_pred             HCCCcCEeC
Confidence            566666655

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=6.3e-08  Score=83.83  Aligned_cols=81  Identities=20%  Similarity=0.180  Sum_probs=38.7

Q ss_pred             CCCCccEEECcCCcccccC--CccCcCCCCCCEEecCCCcccccCChhhhhccCCceEEEcCCCcccccCC-------cc
Q 048402          345 SLTSLIWLLLGKNRLSGTI--PVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLP-------TR  415 (677)
Q Consensus       345 ~l~~L~~L~l~~n~~~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-------~~  415 (677)
                      .++.|++|++++|+++...  +..+..+++|+.|++++|.+. .+++..+.....|+.|++++|++.....       ..
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~-~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i  141 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK-SERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAI  141 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCC-CGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHH
T ss_pred             hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccc-cchhhhhhhccccceeecCCCCcCcCcccchhHHHHH
Confidence            4455555555555554321  123344555555555555554 3333222233445555555555543322       12


Q ss_pred             ccCCCCCCEEe
Q 048402          416 LCDLAFLQILD  426 (677)
Q Consensus       416 ~~~l~~L~~L~  426 (677)
                      +..+|+|+.||
T Consensus       142 ~~~~P~L~~LD  152 (162)
T d1koha1         142 RERFPKLLRLD  152 (162)
T ss_dssp             HTTSTTCCEET
T ss_pred             HHHCCCCCEEC
Confidence            44566666664

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=2.5e-07  Score=79.94  Aligned_cols=82  Identities=18%  Similarity=0.093  Sum_probs=46.0

Q ss_pred             hhhccccEEEcccCcccccC--CcccCCCCCCcEEeccCCcceeecccccccCCCCcEEECCCCcccccCcc-------c
Q 048402          487 EILNLVKETDVSRNNLTKSI--PLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQ-------S  557 (677)
Q Consensus       487 ~~l~~L~~L~Ls~n~l~~~~--~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-------~  557 (677)
                      ..++.|++|+|++|+++...  +..+..+++|+.|++++|+++...+-.+.....|+.|++++|.+......       .
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i  141 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAI  141 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHH
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHH
Confidence            34666677777777766432  23355566667777777766633222333344566666676666543322       1


Q ss_pred             cccCCCCCEEE
Q 048402          558 MSNLMSLNHLN  568 (677)
Q Consensus       558 l~~l~~L~~L~  568 (677)
                      +..+|+|+.||
T Consensus       142 ~~~~P~L~~LD  152 (162)
T d1koha1         142 RERFPKLLRLD  152 (162)
T ss_dssp             HTTSTTCCEET
T ss_pred             HHHCCCCCEEC
Confidence            34556666654

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.91  E-value=5.4e-06  Score=71.60  Aligned_cols=89  Identities=9%  Similarity=0.130  Sum_probs=51.6

Q ss_pred             CCCCCCEEecCCCCCCCcc----CchhhcCCCCCCEEEccCCcCCcccch----hhhhccccCcCCccEEEcccCcCccc
Q 048402           25 NLTSISRLDLSLNTGPEGR----IPRSMASLCNLKSINLRGVHLSQEISE----ILNIFSGCVSIELESLDLRSSSISGH   96 (677)
Q Consensus        25 ~l~~L~~L~Ls~~~~~~~~----~~~~l~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~~~~~~L~~L~L~~n~l~~~   96 (677)
                      +.++|++|+|++++.+...    +..++...++|++|++++|.+......    .+...+     .|++|++++|.++..
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~-----~L~~L~L~~n~i~~~   87 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSP-----SLRVLNVESNFLTPE   87 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCS-----SCCEEECCSSBCCHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcc-----cccceeeehhhcchH
Confidence            4577888888732334321    334566667777888777777643322    233333     677777777766632


Q ss_pred             ----cccccCCCCCCCEEECcCCccc
Q 048402           97 ----LTDQLGQFKNLDNLDLANNSIV  118 (677)
Q Consensus        97 ----~~~~~~~l~~L~~L~L~~n~l~  118 (677)
                          +..++...+.|++|++++|.+.
T Consensus        88 g~~~l~~aL~~n~sL~~L~l~~n~~~  113 (167)
T d1pgva_          88 LLARLLRSTLVTQSIVEFKADNQRQS  113 (167)
T ss_dssp             HHHHHHHHTTTTCCCSEEECCCCSSC
T ss_pred             HHHHHHHHHHhCCcCCEEECCCCcCC
Confidence                2334555566666666666443

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.70  E-value=5.2e-06  Score=71.73  Aligned_cols=89  Identities=16%  Similarity=0.153  Sum_probs=47.3

Q ss_pred             CCccEEEccCC-cccccCChhHhhccCCCCCcCeEecCCCCCcccCC----cccccCCCCceecccCcccccc----CCc
Q 048402          271 SNLVYLDLSNN-SFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIP----DCWMSYQNLEILELSNNKFTGK----LPN  341 (677)
Q Consensus       271 ~~L~~L~l~~n-~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~----~~~  341 (677)
                      +.|++|+++++ .+.......+...+...+.|++|++++|.+.....    ..+...+.|++|++++|.+.+.    +..
T Consensus        15 ~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~   94 (167)
T d1pgva_          15 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR   94 (167)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred             CCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHH
Confidence            45666666653 34433333455555566677777777776653222    2233445666666666666532    122


Q ss_pred             CcCCCCCccEEECcCCcc
Q 048402          342 SLGSLTSLIWLLLGKNRL  359 (677)
Q Consensus       342 ~~~~l~~L~~L~l~~n~~  359 (677)
                      .+...++|++|++++|.+
T Consensus        95 aL~~n~sL~~L~l~~n~~  112 (167)
T d1pgva_          95 STLVTQSIVEFKADNQRQ  112 (167)
T ss_dssp             HTTTTCCCSEEECCCCSS
T ss_pred             HHHhCCcCCEEECCCCcC
Confidence            344445566666655543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.41  E-value=2.7e-05  Score=67.10  Aligned_cols=112  Identities=17%  Similarity=0.194  Sum_probs=62.8

Q ss_pred             ccCCCCCCEEecCCCCCCCc----cCchhhcCCCCCCEEEccCCcCCcccchhh----hhccccCcCCccEEEcccCcCc
Q 048402           23 LGNLTSISRLDLSLNTGPEG----RIPRSMASLCNLKSINLRGVHLSQEISEIL----NIFSGCVSIELESLDLRSSSIS   94 (677)
Q Consensus        23 ~~~l~~L~~L~Ls~~~~~~~----~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~----~~l~~~~~~~L~~L~L~~n~l~   94 (677)
                      ..+.+.|++|++++.+.++.    .+..++...++|++|++++|.++......+    ....     .++.+++++|.+.
T Consensus        13 ~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~-----~l~~l~l~~~~~~   87 (166)
T d1io0a_          13 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNN-----TLKSLNVESNFIS   87 (166)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCS-----SCCEEECCSSCCC
T ss_pred             HhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcc-----cchhhhhcccccc
Confidence            34567888888873344442    234456677888888888887765433333    3333     6777777777665


Q ss_pred             cc----cccccCCCCCCCEEECc--CCcccc----CCCcCCCCCCCCCEEEcccc
Q 048402           95 GH----LTDQLGQFKNLDNLDLA--NNSIVG----PIPQSLGHLSNLRVLQIYNN  139 (677)
Q Consensus        95 ~~----~~~~~~~l~~L~~L~L~--~n~l~~----~~~~~~~~l~~L~~L~L~~n  139 (677)
                      ..    +.+.+...++|+.++|+  +|.+..    .+...+...++|++|+++.+
T Consensus        88 ~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_          88 GSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             HHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             chhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCC
Confidence            32    23445556666654443  334432    12223344555555555544

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.06  E-value=7.7e-05  Score=64.07  Aligned_cols=112  Identities=18%  Similarity=0.178  Sum_probs=57.9

Q ss_pred             CCccEEEccC-CcccccCChhHhhccCCCCCcCeEecCCCCCcccC----CcccccCCCCceecccCcccccc----CCc
Q 048402          271 SNLVYLDLSN-NSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEI----PDCWMSYQNLEILELSNNKFTGK----LPN  341 (677)
Q Consensus       271 ~~L~~L~l~~-n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~----~~~  341 (677)
                      +.|++|++++ +.++......++..+...+.|++|++++|.++...    ...+...+.++.+++++|.+...    +..
T Consensus        17 ~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~   96 (166)
T d1io0a_          17 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE   96 (166)
T ss_dssp             TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred             CCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHH
Confidence            4566666665 34544444445555666677777777777665422    22334456666666666665422    223


Q ss_pred             CcCCCCCccEEECc--CCcccc----cCCccCcCCCCCCEEecCCCc
Q 048402          342 SLGSLTSLIWLLLG--KNRLSG----TIPVSLKNCTALESLDVGENE  382 (677)
Q Consensus       342 ~~~~l~~L~~L~l~--~n~~~~----~~~~~~~~l~~L~~L~l~~n~  382 (677)
                      .+...++|+.++|+  +|.+..    .+...+...++|+.|+++.+.
T Consensus        97 ~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          97 ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence            34445555554443  334432    122233445555555555443