Citrus Sinensis ID: 048450

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130---
Protein Sequence
MPRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTLQELTIHRCPLLENRYREGKGEDWHKISHIPHIKWSITRWCCRITSFERRRCRY
Secondary Structure (PSIPRED)
cccccEEEEccccccEEccccccccccccEEEcccccccccccccccccccccccccEEEEccccccccccccccccccccEEEEEccHHHHHHHcccccccccccccccEEEEccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccEEEEcccccHHHccHHHHHcHHHcEEEEcccHHHHHcHHHHcHHHccHHHHcEEEEcccccHccccHHHHHHHHHcEEEEcccHHHHHHHcccccccccHHccccHHEEHHHHHHcccccccHHcccc
Coil and Loop (DISEMBL)
mprlssltvgscnklkalpdYLLQTTALQELSICSCdlleelpiledrrttdiprltslwisdcpnlkvlpdyllqTTTLqeltihrcpllenryregkgedwhkishiphikwsitrwccritsferrrcry
Flexible Loop (DISEMBL)
mprlssltvgscnklKALPDYLLQTTALQELSICSCDLLeelpiledrrttdiprltslwisdcpnlKVLPDYLLQTTTLqeltihrcplLENRYREgkgedwhkishiphikwsitrwcCRITSFERRRCRY
Low Complexity Region (SEG)
MPRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYllqtttlqeltIHRCPLLENRYREGKGEDWHKISHIPHIKWSITRWCCRITSFERRRCRY
Disordered region (IsUnstruct)
********VGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTLQELTIHRCPLLENRYREGKGEDWHKISHIPHIKWSITRWCCRITSFE******
Disordered Region (DISOPRED)
MPRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTLQELTIHRCPLLENRYREGKGEDWHKISHIPHIKWSITRWCCRITSFERRRC**
Disordered Region (DISEMBL)
********VGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTLQELTIHRCPLLENRYREGKGEDWHKISHIPHIKWSITRWCCRITSFERRRCRY
Disordered Region (DISPRO)
*PRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTLQELTIHRCPLLENRYREGKGEDWHKISHIPHIKWSITRWCCRITSFERR*CRY
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTLQELTIHRCPLLENRYREGKGEDWHKISHIPHIKWSITRWCCRITSFERRRCRY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	133	2.2.26 [Sep-21-2011]
Q7XBQ9	970	Disease resistance protei	N/A	no	0.849	0.116	0.431	5e-16
Q7XA39	988	Putative disease resistan	N/A	no	0.819	0.110	0.383	6e-13
Q7XA40	992	Putative disease resistan	N/A	no	0.849	0.113	0.405	8e-13
Q7XA42	979	Putative disease resistan	N/A	no	0.819	0.111	0.401	6e-12
Q9XIF0	906	Putative disease resistan	yes	no	0.631	0.092	0.340	1e-05
P0DI18	1049	Probable disease resistan	no	no	0.781	0.099	0.350	2e-05
P0DI17	1049	Probable disease resistan	no	no	0.781	0.099	0.350	2e-05
P0DI16	1017	Probable disease resistan	no	no	0.601	0.078	0.367	3e-05
F4IBE4	1017	Probable disease resistan	no	no	0.601	0.078	0.367	3e-05
Q9SZA7	816	Probable disease resistan	no	no	0.631	0.102	0.352	3e-05

>sp|Q7XBQ9|RGA2_SOLBU Disease resistance protein RGA2 OS=Solanum bulbocastanum GN=RGA2 PE=1 SV=1

 Score = 83.2 bits (204), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 50/116 (43%), Positives = 61/116 (52%), Gaps = 3/116 (2%)

Query: 1   MPRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLW 60
           +  L  LT+  CN LK LP  L    AL+ L I  C  LE LP   +     +  LT L+
Sbjct: 858 LANLKYLTISRCNNLKELPTSLASLNALKSLKIQLCCALESLP---EEGLEGLSSLTELF 914

Query: 61  ISDCPNLKVLPDYLLQTTTLQELTIHRCPLLENRYREGKGEDWHKISHIPHIKWSI 116
           +  C  LK LP+ L   TTL  L I  CP L  R  +G GEDWHKISHIP++   I
Sbjct: 915 VEHCNMLKCLPEGLQHLTTLTSLKIRGCPQLIKRCEKGIGEDWHKISHIPNVNIYI 970

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth. Confers a broad resistance to all known races of P.infestans.
Solanum bulbocastanum (taxid: 147425)

>sp|Q7XA39|RGA4_SOLBU Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1

 Score = 72.8 bits (177), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 43/112 (38%), Positives = 58/112 (51%), Gaps = 3/112 (2%)

Query: 1   MPRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLW 60
           +  L  L+      LK LP  L    AL+ L I SCD LE  P   ++    +  LT L+
Sbjct: 877 LTNLEFLSFFDFKNLKDLPTSLTSLNALKRLQIESCDSLESFP---EQGLEGLTSLTQLF 933

Query: 61  ISDCPNLKVLPDYLLQTTTLQELTIHRCPLLENRYREGKGEDWHKISHIPHI 112
           +  C  LK LP+ L   T L  L +  CP +E R  +  GEDWHKI+HIP++
Sbjct: 934 VKYCKMLKCLPEGLQHLTALTNLGVSGCPEVEKRCDKEIGEDWHKIAHIPNL 985

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth.

Solanum bulbocastanum (taxid: 147425)

>sp|Q7XA40|RGA3_SOLBU Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2

 Score = 72.4 bits (176), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 47/116 (40%), Positives = 58/116 (50%), Gaps = 3/116 (2%)

Query: 1   MPRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLW 60
           +  L  L+V     LK LP  L     L+ L I  C  LE LP   +     +  LT L+
Sbjct: 880 LENLIYLSVSFLENLKELPTSLASLNNLKCLDIRYCYALESLP---EEGLEGLSSLTELF 936

Query: 61  ISDCPNLKVLPDYLLQTTTLQELTIHRCPLLENRYREGKGEDWHKISHIPHIKWSI 116
           +  C  LK LP+ L   TTL  L I  CP L  R  +G GEDWHKISHIP++   I
Sbjct: 937 VEHCNMLKCLPEGLQHLTTLTSLKIRGCPQLIKRCEKGIGEDWHKISHIPNVNIYI 992

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth.

Solanum bulbocastanum (taxid: 147425)

>sp|Q7XA42|RGA1_SOLBU Putative disease resistance protein RGA1 OS=Solanum bulbocastanum GN=RGA1 PE=2 SV=2

 Score = 69.3 bits (168), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 45/112 (40%), Positives = 59/112 (52%), Gaps = 3/112 (2%)

Query: 1   MPRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLW 60
           +  L  L +     LK LP  L    AL+ L    CD LE LP   +     +  LT L 
Sbjct: 867 LANLKYLKISFFRNLKELPTSLASLNALKSLKFEFCDALESLP---EEGVKGLTSLTELS 923

Query: 61  ISDCPNLKVLPDYLLQTTTLQELTIHRCPLLENRYREGKGEDWHKISHIPHI 112
           +S+C  LK LP+ L   T L  LTI +CP++  R   G GEDWHKI+HIP++
Sbjct: 924 VSNCMMLKCLPEGLQHLTALTTLTITQCPIVFKRCERGIGEDWHKIAHIPYL 975

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth.

Solanum bulbocastanum (taxid: 147425)

>sp|Q9XIF0|DRL13_ARATH Putative disease resistance protein At1g59780 OS=Arabidopsis thaliana GN=At1g59780 PE=2 SV=1

 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 4/88 (4%)

Query: 28  LQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTLQELTIHR 87
           L  L I   D LEE  + E      +P L +L I DC  LK +PD L   ++L+EL I  
Sbjct: 804 LHRLEIWGLDALEEWIVEEG----SMPLLHTLHIVDCKKLKEIPDGLRFISSLKELAIRT 859

Query: 88  CPLLENRYREGKGEDWHKISHIPHIKWS 115
              +  +     GED++K+ H+P I+++
Sbjct: 860 NEKVFQKKVSKGGEDYYKMQHVPLIRYN 887

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|P0DI18|DRL45_ARATH Probable disease resistance protein RDL6 OS=Arabidopsis thaliana GN=RDL6 PE=2 SV=1

 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 62/114 (54%), Gaps = 10/114 (8%)

Query: 1    MPRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLW 60
            MP+L +L +  C KLK LP+   Q   L+   +       E  I+ED     +P L +L 
Sbjct: 945  MPQLHTLEIRRCPKLKKLPNGFPQLQNLELNELEEW----EEWIVED---GSMPLLHTLR 997

Query: 61   ISDCPNLKVLPDYLLQTTTLQELTIHRCPLLENRYREGKGEDWHKISHIPHIKW 114
            I +CP LK LPD L    +L+ LT+ +    + R  +G GED++K+ HIP +++
Sbjct: 998  IWNCPKLKQLPDGLRFIYSLKNLTVPKR--WKKRLSKG-GEDYYKVQHIPSVEF 1048

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|P0DI17|DRL11_ARATH Probable disease resistance protein RF9 OS=Arabidopsis thaliana GN=RF9 PE=2 SV=1

 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 62/114 (54%), Gaps = 10/114 (8%)

Query: 1    MPRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLW 60
            MP+L +L +  C KLK LP+   Q   L+   +       E  I+ED     +P L +L 
Sbjct: 945  MPQLHTLEIRRCPKLKKLPNGFPQLQNLELNELEEW----EEWIVED---GSMPLLHTLR 997

Query: 61   ISDCPNLKVLPDYLLQTTTLQELTIHRCPLLENRYREGKGEDWHKISHIPHIKW 114
            I +CP LK LPD L    +L+ LT+ +    + R  +G GED++K+ HIP +++
Sbjct: 998  IWNCPKLKQLPDGLRFIYSLKNLTVPKR--WKKRLSKG-GEDYYKVQHIPSVEF 1048

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|P0DI16|DRL44_ARATH Probable disease resistance protein RDL5 OS=Arabidopsis thaliana GN=RDL5 PE=1 SV=1

 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 48/87 (55%), Gaps = 7/87 (8%)

Query: 28  LQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTLQELTIHR 87
           LQ+LSI   +  EE  +        +P L +L+I DCP LK LPD L    +L+ L I  
Sbjct: 916 LQKLSIYRLEEWEEWIV----EQGSMPFLHTLYIDDCPKLKKLPDGLQFIYSLKNLKI-- 969

Query: 88  CPLLENRYREGKGEDWHKISHIPHIKW 114
               + R  EG GE+++K+ HIP +++
Sbjct: 970 SERWKERLSEG-GEEYYKVQHIPSVEF 995

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|F4IBE4|DRL10_ARATH Probable disease resistance protein RF45 OS=Arabidopsis thaliana GN=RF45 PE=1 SV=1

 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 48/87 (55%), Gaps = 7/87 (8%)

Query: 28  LQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTLQELTIHR 87
           LQ+LSI   +  EE  +        +P L +L+I DCP LK LPD L    +L+ L I  
Sbjct: 916 LQKLSIYRLEEWEEWIV----EQGSMPFLHTLYIDDCPKLKKLPDGLQFIYSLKNLKI-- 969

Query: 88  CPLLENRYREGKGEDWHKISHIPHIKW 114
               + R  EG GE+++K+ HIP +++
Sbjct: 970 SERWKERLSEG-GEEYYKVQHIPSVEF 995

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SZA7|DRL29_ARATH Probable disease resistance protein At4g33300 OS=Arabidopsis thaliana GN=At4g33300 PE=2 SV=3

 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 45/88 (51%), Gaps = 4/88 (4%)

Query: 1   MPRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLW 60
            P+L  LT+  C+ L ALP  +   T+L  LSI +C  L ELP    +  + +  L  L 
Sbjct: 655 FPKLGDLTIDHCDDLVALPSSICGLTSLSCLSITNCPRLGELP----KNLSKLQALEILR 710

Query: 61  ISDCPNLKVLPDYLLQTTTLQELTIHRC 88
           +  CP LK LP  + +   L+ L I +C
Sbjct: 711 LYACPELKTLPGEICELPGLKYLDISQC 738

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	133
147769144	628	hypothetical protein VITISV_033996 [Viti	0.872	0.184	0.380	3e-14
46576968	970	RecName: Full=Disease resistance protein	0.849	0.116	0.431	4e-14
207693269	970	late blight resistance protein Rpi-pta1	0.819	0.112	0.437	4e-14
207693267	970	late blight resistance protein Rpi-sto1	0.819	0.112	0.437	4e-14
224115778	1234	nbs-lrr resistance protein [Populus tric	0.812	0.087	0.437	5e-14
147772835	920	hypothetical protein VITISV_006248 [Viti	0.849	0.122	0.398	1e-13
413924744	399	hypothetical protein ZEAMMB73_765808 [Ze	0.796	0.265	0.445	2e-13
147815461	856	hypothetical protein VITISV_018645 [Viti	0.849	0.132	0.398	2e-13
212721874	152	uncharacterized protein LOC100192812 [Ze	0.857	0.75	0.384	4e-13
224134406	987	cc-nbs-lrr resistance protein [Populus t	0.541	0.072	0.534	7e-13

>gi|147769144|emb|CAN62986.1| hypothetical protein VITISV_033996 [Vitis vinifera]

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 46/121 (38%), Positives = 70/121 (57%), Gaps = 5/121 (4%)

Query: 1   MPRLSSLTVGSCNKLKALPDYLLQTTA-----LQELSICSCDLLEELPILEDRRTTDIPR 55
           +P L  + +     +K +    L  ++     L+EL+I   D L++  I E    + +P 
Sbjct: 507 LPVLEKMGIWHMRGVKYIGSEFLGASSTVFPKLKELTISRLDELKQWAIKEKEERSIMPC 566

Query: 56  LTSLWISDCPNLKVLPDYLLQTTTLQELTIHRCPLLENRYREGKGEDWHKISHIPHIKWS 115
           L  L    CP L+ LPD++LQ TTLQ+L I   P+L+ RY++  GEDWHKISHIP +K+S
Sbjct: 567 LNYLSTIGCPKLEELPDHVLQRTTLQKLDIRSSPILKQRYQKDIGEDWHKISHIPEVKYS 626

Query: 116 I 116
           +
Sbjct: 627 L 627

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|46576968|sp|Q7XBQ9.1|RGA2_SOLBU RecName: Full=Disease resistance protein RGA2; AltName: Full=Blight resistance protein RPI; AltName: Full=RGA2-blb gi|32693281|gb|AAP86601.1| putative disease resistant protein RGA2 [Solanum bulbocastanum] gi|39636705|gb|AAR29069.1| blight resistance protein RPI [Solanum bulbocastanum]

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 50/116 (43%), Positives = 61/116 (52%), Gaps = 3/116 (2%)

Query: 1   MPRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLW 60
           +  L  LT+  CN LK LP  L    AL+ L I  C  LE LP   +     +  LT L+
Sbjct: 858 LANLKYLTISRCNNLKELPTSLASLNALKSLKIQLCCALESLP---EEGLEGLSSLTELF 914

Query: 61  ISDCPNLKVLPDYLLQTTTLQELTIHRCPLLENRYREGKGEDWHKISHIPHIKWSI 116
           +  C  LK LP+ L   TTL  L I  CP L  R  +G GEDWHKISHIP++   I
Sbjct: 915 VEHCNMLKCLPEGLQHLTTLTSLKIRGCPQLIKRCEKGIGEDWHKISHIPNVNIYI 970

Source: Solanum bulbocastanum

Species: Solanum bulbocastanum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|207693269|gb|ACI25289.1| late blight resistance protein Rpi-pta1 [Solanum stoloniferum]

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 49/112 (43%), Positives = 60/112 (53%), Gaps = 3/112 (2%)

Query: 1   MPRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLW 60
           +  L  LT+  CN LK LP  L    AL+ L I  C  LE LP   +     +  LT L+
Sbjct: 858 LANLKYLTISRCNNLKELPTSLASLNALKSLKIQLCCALESLP---EEGLEGLSSLTELF 914

Query: 61  ISDCPNLKVLPDYLLQTTTLQELTIHRCPLLENRYREGKGEDWHKISHIPHI 112
           +  C  LK LP+ L   TTL  L I  CP L  R  +G GEDWHKISHIP++
Sbjct: 915 VEHCNMLKCLPEGLQHLTTLTSLKIRGCPQLIKRCEKGIGEDWHKISHIPNV 966

Source: Solanum stoloniferum

Species: Solanum stoloniferum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|207693267|gb|ACI25288.1| late blight resistance protein Rpi-sto1 [Solanum stoloniferum]

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 49/112 (43%), Positives = 60/112 (53%), Gaps = 3/112 (2%)

Query: 1   MPRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLW 60
           +  L  LT+  CN LK LP  L    AL+ L I  C  LE LP   +     +  LT L+
Sbjct: 858 LANLKYLTISRCNNLKELPTSLASLNALKSLKIQLCCALESLP---EEGLEGLSSLTELF 914

Query: 61  ISDCPNLKVLPDYLLQTTTLQELTIHRCPLLENRYREGKGEDWHKISHIPHI 112
           +  C  LK LP+ L   TTL  L I  CP L  R  +G GEDWHKISHIP++
Sbjct: 915 VEHCNMLKCLPEGLQHLTTLTSLKIRGCPQLIKRCEKGIGEDWHKISHIPNV 966

Source: Solanum stoloniferum

Species: Solanum stoloniferum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224115778|ref|XP_002317122.1| nbs-lrr resistance protein [Populus trichocarpa] gi|222860187|gb|EEE97734.1| nbs-lrr resistance protein [Populus trichocarpa]

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 49/112 (43%), Positives = 62/112 (55%), Gaps = 4/112 (3%)

Query: 1    MPRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLW 60
            +  L SL++ SC  L +LP+ L   T LQ L I  C  + ELP        ++  L SL 
Sbjct: 1107 LSALKSLSILSCTGLASLPEGLQFITTLQNLEIHDCPEVMELPAW----VENLVSLRSLT 1162

Query: 61   ISDCPNLKVLPDYLLQTTTLQELTIHRCPLLENRYREGKGEDWHKISHIPHI 112
            ISDC N+K  P  L +   LQ L+I  CP LE R + G G DWHKISH P+I
Sbjct: 1163 ISDCQNIKSFPQGLQRLRALQHLSIRGCPELEKRCQRGNGVDWHKISHTPYI 1214

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147772835|emb|CAN71670.1| hypothetical protein VITISV_006248 [Vitis vinifera]

 Score = 80.9 bits (198), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 47/118 (39%), Positives = 67/118 (56%), Gaps = 5/118 (4%)

Query: 1   MPRLSSLTVGSCNKLKALPDYLLQTTA-----LQELSICSCDLLEELPILEDRRTTDIPR 55
           +P L  L +     +K +    L +++     L+EL+I   D L++  I E    + +P 
Sbjct: 799 LPVLEELGIWKMYGVKCIGSEFLGSSSTVFPKLKELAISGLDELKQWEIKEKEERSIMPC 858

Query: 56  LTSLWISDCPNLKVLPDYLLQTTTLQELTIHRCPLLENRYREGKGEDWHKISHIPHIK 113
           L  L +  CP L+ LPD++LQ TTLQ L I   P+LE RYR+  GED HKISHIP +K
Sbjct: 859 LNHLIMRGCPKLEGLPDHVLQRTTLQILNIRSSPILERRYRKDIGEDRHKISHIPQVK 916

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413924744|gb|AFW64676.1| hypothetical protein ZEAMMB73_765808 [Zea mays]

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/110 (44%), Positives = 61/110 (55%), Gaps = 4/110 (3%)

Query: 4   LSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISD 63
           L  L +  C +L  LP  +   T+LQEL I  C  L  LP       + +  L  L +SD
Sbjct: 292 LRKLRIRDCPRLACLPQ-MSGLTSLQELLISDCPGLTSLP---QGMMSGLASLEKLIVSD 347

Query: 64  CPNLKVLPDYLLQTTTLQELTIHRCPLLENRYREGKGEDWHKISHIPHIK 113
           CP +K LP  +   TTL EL I RCP LE R   GKGEDWH ISHIP+++
Sbjct: 348 CPGIKFLPQDIKGLTTLMELRIRRCPDLERRCETGKGEDWHLISHIPNLR 397

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147815461|emb|CAN66085.1| hypothetical protein VITISV_018645 [Vitis vinifera]

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/118 (39%), Positives = 67/118 (56%), Gaps = 5/118 (4%)

Query: 1   MPRLSSLTVGSCNKLKALPDYLLQTTA-----LQELSICSCDLLEELPILEDRRTTDIPR 55
           +P L  L +     +K +    L +++     L+EL+I   D L++  I E    + +P 
Sbjct: 735 LPVLXELGIWKMYXVKXIGSEFLGSSSTVFPKLKELAISGLDELKQWEIKEXEERSIMPC 794

Query: 56  LTSLWISDCPNLKVLPDYLLQTTTLQELTIHRCPLLENRYREGKGEDWHKISHIPHIK 113
           L  L +  CP L+ LPD++LQ TTLQ L I   P+LE RYR+  GED HKISHIP +K
Sbjct: 795 LNHLIMRGCPKLEGLPDHVLQRTTLQILNIRSSPILERRYRKDIGEDRHKISHIPQVK 852

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|212721874|ref|NP_001131477.1| uncharacterized protein LOC100192812 [Zea mays] gi|194691634|gb|ACF79901.1| unknown [Zea mays]

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 45/117 (38%), Positives = 59/117 (50%), Gaps = 3/117 (2%)

Query: 4   LSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISD 63
           L  L +  C +L  LP  +   T+LQ+L I  C  L  LP       + +  L +L +  
Sbjct: 31  LRQLRISDCPRLACLPQSMSGLTSLQQLQIIECQGLASLP---RGMMSSLASLENLVVDG 87

Query: 64  CPNLKVLPDYLLQTTTLQELTIHRCPLLENRYREGKGEDWHKISHIPHIKWSITRWC 120
           CP +K LP      TTL  L I RCP LE R   G+GEDWH ISHIP +   ++  C
Sbjct: 88  CPGIKSLPQDTKGLTTLMGLRIRRCPDLERRCEAGQGEDWHLISHIPTLMIGLSAAC 144

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224134406|ref|XP_002321815.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222868811|gb|EEF05942.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 39/73 (53%), Positives = 48/73 (65%), Gaps = 1/73 (1%)

Query: 46  EDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTLQELTIHRCPLLENRYREGKGEDWHK 105
           +D RT  +P+L  L +  CP LK LPDY+L T  L EL ++ CPLL  RY E KGEDWHK
Sbjct: 908 KDTRTAIMPQLRELEVKGCPKLKALPDYVL-TAPLVELRMNECPLLSERYEEEKGEDWHK 966

Query: 106 ISHIPHIKWSITR 118
           ISHI  I+ +  R
Sbjct: 967 ISHISEIEINYQR 979

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	133
TAIR|locus:504956182	1049	AT1G58848 [Arabidopsis thalian	0.781	0.099	0.342	5.3e-07
TAIR|locus:2826978	1049	AT1G59218 [Arabidopsis thalian	0.781	0.099	0.342	5.3e-07
TAIR|locus:2174944	815	AT5G66910 [Arabidopsis thalian	0.481	0.078	0.397	3.2e-05
TAIR|locus:2119196	816	ADR1-L1 "ADR1-like 1" [Arabido	0.496	0.080	0.385	4.2e-05
TAIR|locus:2171479	623	ADR1-L3 "ADR1-like 3" [Arabido	0.496	0.105	0.328	0.00013
TAIR|locus:2175433	811	ADR1-L2 "ADR1-like 2" [Arabido	0.488	0.080	0.347	0.00018
TAIR|locus:2155801	1046	AT5G58120 [Arabidopsis thalian	0.473	0.060	0.367	0.00019
TAIR|locus:504956184	1017	AT1G58807 "AT1G58807" [Arabido	0.601	0.078	0.356	0.0003
TAIR|locus:2827038	1017	AT1G59124 "AT1G59124" [Arabido	0.601	0.078	0.356	0.0003
TAIR|locus:504956186	1138	AT1G58602 [Arabidopsis thalian	0.593	0.069	0.356	0.00072

TAIR|locus:504956182 AT1G58848 [Arabidopsis thaliana (taxid:3702)]

 Score = 128 (50.1 bits), Expect = 5.3e-07, P = 5.3e-07
 Identities = 39/114 (34%), Positives = 59/114 (51%)

Query:     1 MPRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLW 60
             MP+L +L +  C KLK LP+   Q   LQ L +   +  EE  I+ED     +P L +L 
Sbjct:   945 MPQLHTLEIRRCPKLKKLPNGFPQ---LQNLELNELEEWEEW-IVEDG---SMPLLHTLR 997

Query:    61 ISDCPNLKVLPDYXXXXXXXXXXXIHRCPLLENRYREGKGEDWHKISHIPHIKW 114
             I +CP LK LPD            + +    + R  +G GED++K+ HIP +++
Sbjct:   998 IWNCPKLKQLPDGLRFIYSLKNLTVPK--RWKKRLSKG-GEDYYKVQHIPSVEF 1048

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2826978 AT1G59218 [Arabidopsis thaliana (taxid:3702)]

 Score = 128 (50.1 bits), Expect = 5.3e-07, P = 5.3e-07
 Identities = 39/114 (34%), Positives = 59/114 (51%)

Query:     1 MPRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLW 60
             MP+L +L +  C KLK LP+   Q   LQ L +   +  EE  I+ED     +P L +L 
Sbjct:   945 MPQLHTLEIRRCPKLKKLPNGFPQ---LQNLELNELEEWEEW-IVEDG---SMPLLHTLR 997

Query:    61 ISDCPNLKVLPDYXXXXXXXXXXXIHRCPLLENRYREGKGEDWHKISHIPHIKW 114
             I +CP LK LPD            + +    + R  +G GED++K+ HIP +++
Sbjct:   998 IWNCPKLKQLPDGLRFIYSLKNLTVPK--RWKKRLSKG-GEDYYKVQHIPSVEF 1048

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2174944 AT5G66910 [Arabidopsis thaliana (taxid:3702)]

 Score = 110 (43.8 bits), Expect = 3.2e-05, P = 3.2e-05
 Identities = 27/68 (39%), Positives = 39/68 (57%)

Query:     4 LSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISD 63
             L +L++ +CNKL  LP+ +   + L+ L +CSC  L ELP   +R    +  L SL IS 
Sbjct:   681 LKTLSITNCNKLSQLPEAIGNLSRLEVLRMCSCMNLSELPEATER----LSNLRSLDISH 736

Query:    64 CPNLKVLP 71
             C  L+ LP
Sbjct:   737 CLGLRKLP 744

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2119196 ADR1-L1 "ADR1-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 109 (43.4 bits), Expect = 4.2e-05, P = 4.2e-05
 Identities = 27/70 (38%), Positives = 37/70 (52%)

Query:     2 PRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWI 61
             P+L  LT+  C+ L ALP  +   T+L  LSI +C  L ELP    +  + +  L  L +
Sbjct:   656 PKLGDLTIDHCDDLVALPSSICGLTSLSCLSITNCPRLGELP----KNLSKLQALEILRL 711

Query:    62 SDCPNLKVLP 71
               CP LK LP
Sbjct:   712 YACPELKTLP 721

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0048046 "apoplast" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IGI

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

TAIR|locus:2171479 ADR1-L3 "ADR1-like 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 103 (41.3 bits), Expect = 0.00013, P = 0.00013
 Identities = 23/70 (32%), Positives = 38/70 (54%)

Query:     2 PRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWI 61
             P+L+ +T+  C+ L  LP  +   T+L  +SI +C  ++ELP    +  + +  L  L +
Sbjct:   463 PKLTDITIDYCDDLAELPSTICGITSLNSISITNCPNIKELP----KNISKLQALQLLRL 518

Query:    62 SDCPNLKVLP 71
               CP LK LP
Sbjct:   519 YACPELKSLP 528

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2175433 ADR1-L2 "ADR1-like 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 103 (41.3 bits), Expect = 0.00018, P = 0.00018
 Identities = 24/69 (34%), Positives = 40/69 (57%)

Query:     4 LSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISD 63
             L+S+++ +C ++K LP  L +  ALQ L + +C  L  LP+       ++PRL  + IS 
Sbjct:   677 LNSISITNCPRIKELPKNLSKLKALQLLRLYACHELNSLPV----EICELPRLKYVDISQ 732

Query:    64 CPNLKVLPD 72
             C +L  LP+
Sbjct:   733 CVSLSSLPE 741

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0042742 "defense response to bacterium" evidence=IGI

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

TAIR|locus:2155801 AT5G58120 [Arabidopsis thaliana (taxid:3702)]

 Score = 104 (41.7 bits), Expect = 0.00019, P = 0.00019
 Identities = 25/68 (36%), Positives = 41/68 (60%)

Query:     4 LSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISD 63
             L ++ +G    LK LPD L   T L++L++ SC+ L E+P       + + +L +LW+S 
Sbjct:   628 LKNMDLGWSPNLKELPD-LTNATNLEDLNLNSCESLVEIP----SSFSHLHKLKNLWMSY 682

Query:    64 CPNLKVLP 71
             C NL+V+P
Sbjct:   683 CINLQVIP 690

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:504956184 AT1G58807 "AT1G58807" [Arabidopsis thaliana (taxid:3702)]

 Score = 102 (41.0 bits), Expect = 0.00030, P = 0.00030
 Identities = 31/87 (35%), Positives = 45/87 (51%)

Query:    28 LQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYXXXXXXXXXXXIHR 87
             LQ+LSI   +  EE  I+E      +P L +L+I DCP LK LPD            I  
Sbjct:   916 LQKLSIYRLEEWEEW-IVEQG---SMPFLHTLYIDDCPKLKKLPDGLQFIYSLKNLKISE 971

Query:    88 CPLLENRYREGKGEDWHKISHIPHIKW 114
                 + R  EG GE+++K+ HIP +++
Sbjct:   972 --RWKERLSEG-GEEYYKVQHIPSVEF 995

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2827038 AT1G59124 "AT1G59124" [Arabidopsis thaliana (taxid:3702)]

 Score = 102 (41.0 bits), Expect = 0.00030, P = 0.00030
 Identities = 31/87 (35%), Positives = 45/87 (51%)

Query:    28 LQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYXXXXXXXXXXXIHR 87
             LQ+LSI   +  EE  I+E      +P L +L+I DCP LK LPD            I  
Sbjct:   916 LQKLSIYRLEEWEEW-IVEQG---SMPFLHTLYIDDCPKLKKLPDGLQFIYSLKNLKISE 971

Query:    88 CPLLENRYREGKGEDWHKISHIPHIKW 114
                 + R  EG GE+++K+ HIP +++
Sbjct:   972 --RWKERLSEG-GEEYYKVQHIPSVEF 995

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:504956186 AT1G58602 [Arabidopsis thaliana (taxid:3702)]

 Score = 99 (39.9 bits), Expect = 0.00072, P = 0.00072
 Identities = 31/87 (35%), Positives = 46/87 (52%)

Query:    28 LQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYXXXXXXXXXXXIHR 87
             LQ+LSI   +  EE  I+E      +P L +L+I  CPNLK LPD            + +
Sbjct:  1058 LQKLSIREIEW-EEW-IVEQG---SMPLLHTLYIGVCPNLKELPDGLRFIYSLKNLIVSK 1112

Query:    88 CPLLENRYREGKGEDWHKISHIPHIKW 114
                 + R  EG GED++K+ HIP +++
Sbjct:  1113 --RWKKRLSEG-GEDYYKVQHIPSVEF 1136

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: grail3.0109003001 nbs-lrr resistance protein (1235 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	133
PLN03210	1153	PLN03210, PLN03210, Resistant to P	0.001
PLN03210	1153	PLN03210, PLN03210, Resistant to P	0.004

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 37.5 bits (87), Expect = 0.001
 Identities = 34/111 (30%), Positives = 46/111 (41%), Gaps = 22/111 (19%)

Query: 4   LSSLTVGSCNKLKALPD--------YLLQTTA-----------LQELSIC---SCDLLEE 41
           L  L +  C++LK+ PD         L +T             L EL +C   S  L E 
Sbjct: 706 LYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWER 765

Query: 42  LPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTLQELTIHRCPLLE 92
           +  L    T   P LT L++SD P+L  LP  +     L+ L I  C  LE
Sbjct: 766 VQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLE 816

syringae 6; Provisional. Length = 1153

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 35.6 bits (82), Expect = 0.004
 Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 8/82 (9%)

Query: 4   LSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISD 63
           L +L +  C+ L  LP  +     L++L +  C+ LE LP        ++  L  L +S 
Sbjct: 659 LETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPT-----GINLKSLYRLNLSG 713

Query: 64  CPNLKVLPDYLLQTTTLQELTI 85
           C  LK  PD    +T +  L +
Sbjct: 714 CSRLKSFPDI---STNISWLDL 732

syringae 6; Provisional. Length = 1153

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	133
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.09
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.99
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	98.88
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	98.85
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.72
KOG0617	264	consensus Ras suppressor protein (contains leucine	98.63
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.56
PLN03150	623	hypothetical protein; Provisional	98.46
PLN03150	623	hypothetical protein; Provisional	98.41
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.38
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.34
KOG0617	264	consensus Ras suppressor protein (contains leucine	98.33
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.24
PRK15386	426	type III secretion protein GogB; Provisional	98.21
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.18
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.08
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.04
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	97.9
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	97.88
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.88
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	97.8
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.72
PRK15386	426	type III secretion protein GogB; Provisional	97.61
KOG0472	565	consensus Leucine-rich repeat protein [Function un	97.58
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	97.56
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	97.42
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	97.34
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	97.31
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	97.23
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	97.21
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.11
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	97.06
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	96.98
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	96.9
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	96.82
KOG4237	498	consensus Extracellular matrix protein slit, conta	96.76
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	96.69
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	96.63
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	96.57
KOG4237	498	consensus Extracellular matrix protein slit, conta	96.56
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	96.45
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.23
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	96.23
KOG3864	221	consensus Uncharacterized conserved protein [Funct	96.23
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	96.11
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.97
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	95.88
KOG3864	221	consensus Uncharacterized conserved protein [Funct	95.82
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	95.22
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	94.87
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	94.83
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	94.82
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	94.69
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	94.63
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	94.43
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	94.37
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	94.25
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	93.22
KOG2123	388	consensus Uncharacterized conserved protein [Funct	92.24
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	91.49
KOG4341	483	consensus F-box protein containing LRR [General fu	90.42
KOG1947	482	consensus Leucine rich repeat proteins, some prote	89.97
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	89.87
smart00370	26	LRR Leucine-rich repeats, outliers.	89.87
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	89.86
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	89.12
KOG2123	388	consensus Uncharacterized conserved protein [Funct	88.84
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	85.72
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	83.97
KOG1947	482	consensus Leucine rich repeat proteins, some prote	83.19
KOG4341	483	consensus F-box protein containing LRR [General fu	83.17
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	80.63

>PLN03210 Resistant to P

Probab=99.09  E-value=2.8e-10  Score=94.82  Aligned_cols=87  Identities=29%  Similarity=0.479  Sum_probs=64.3

Q ss_pred             CCccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCc------------
Q 048450            2 PRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKV------------   69 (133)
Q Consensus         2 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~------------   69 (133)
                      ++|+.|++++|+.+..+|..++++++|+.|++.+|..++.+|.    .+ .+++|+.|++++|..++.            
T Consensus       778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~----~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~  852 (1153)
T PLN03210        778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPT----GI-NLESLESLDLSGCSRLRTFPDISTNISDLN  852 (1153)
T ss_pred             ccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCC----CC-CccccCEEECCCCCccccccccccccCEeE
Confidence            4678888888888888888888888888888888888888886    44 577777777777765544            


Q ss_pred             --------cCcCCCCCCCccEEEEecCchhHH
Q 048450           70 --------LPDYLLQTTTLQELTIHRCPLLEN   93 (133)
Q Consensus        70 --------lp~~~~~l~~L~~L~i~~c~~l~~   93 (133)
                              +|.++..+++|+.|++.+|+.+..
T Consensus       853 Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~  884 (1153)
T PLN03210        853 LSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQR  884 (1153)
T ss_pred             CCCCCCccChHHHhcCCCCCEEECCCCCCcCc
Confidence                    344455566777777777776663

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=98.99  E-value=1.9e-09  Score=89.98  Aligned_cols=86  Identities=29%  Similarity=0.528  Sum_probs=64.9

Q ss_pred             CCCccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCCc
Q 048450            1 MPRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTL   80 (133)
Q Consensus         1 l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L   80 (133)
                      +++|+.|+++++..++.+| .+..+++|+.|++.+|..+..+|.    .++++++|+.|++++|+.++.+|..+ ++++|
T Consensus       633 l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~----si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL  706 (1153)
T PLN03210        633 LTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPS----SIQYLNKLEDLDMSRCENLEILPTGI-NLKSL  706 (1153)
T ss_pred             CCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccch----hhhccCCCCEEeCCCCCCcCccCCcC-CCCCC
Confidence            3567777777776677776 466777888888888877777877    77778888888888888888888665 57788


Q ss_pred             cEEEEecCchhH
Q 048450           81 QELTIHRCPLLE   92 (133)
Q Consensus        81 ~~L~i~~c~~l~   92 (133)
                      +.|++++|..+.
T Consensus       707 ~~L~Lsgc~~L~  718 (1153)
T PLN03210        707 YRLNLSGCSRLK  718 (1153)
T ss_pred             CEEeCCCCCCcc
Confidence            888888876554

syringae 6; Provisional

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=98.88  E-value=3.3e-09  Score=86.95  Aligned_cols=82  Identities=20%  Similarity=0.254  Sum_probs=37.2

Q ss_pred             CccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCCccE
Q 048450            3 RLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTLQE   82 (133)
Q Consensus         3 ~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~   82 (133)
                      +|++|+++++.....+|..++++++|++|++++|...+.+|.    .++.+++|++|+++++.....+|..+..+++|++
T Consensus       165 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~----~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  240 (968)
T PLN00113        165 SLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPR----ELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNH  240 (968)
T ss_pred             CCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCCh----HHcCcCCccEEECcCCccCCcCChhHhcCCCCCE
Confidence            344444444333333444444444444444444433333444    4444555555555444433344544555555555


Q ss_pred             EEEecC
Q 048450           83 LTIHRC   88 (133)
Q Consensus        83 L~i~~c   88 (133)
                      |++++|
T Consensus       241 L~L~~n  246 (968)
T PLN00113        241 LDLVYN  246 (968)
T ss_pred             EECcCc
Confidence            555544

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=98.85  E-value=4.6e-09  Score=86.13  Aligned_cols=84  Identities=18%  Similarity=0.218  Sum_probs=57.4

Q ss_pred             CCccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCCcc
Q 048450            2 PRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTLQ   81 (133)
Q Consensus         2 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~   81 (133)
                      ++|++|+++++.....+|..++.+++|+.|+++++...+.+|.    .++++++|++|++++|.....+|..+.++++|+
T Consensus       140 ~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~----~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~  215 (968)
T PLN00113        140 PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPN----SLTNLTSLEFLTLASNQLVGQIPRELGQMKSLK  215 (968)
T ss_pred             CCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCCh----hhhhCcCCCeeeccCCCCcCcCChHHcCcCCcc
Confidence            4566666666544445666667777777777777655556666    677777777777777666666777777777778


Q ss_pred             EEEEecCc
Q 048450           82 ELTIHRCP   89 (133)
Q Consensus        82 ~L~i~~c~   89 (133)
                      .|+++++.
T Consensus       216 ~L~L~~n~  223 (968)
T PLN00113        216 WIYLGYNN  223 (968)
T ss_pred             EEECcCCc
Confidence            77777664

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.72  E-value=3.9e-08  Score=54.63  Aligned_cols=58  Identities=26%  Similarity=0.425  Sum_probs=31.7

Q ss_pred             CCccEEeecCCCCCccCCc-cCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCC
Q 048450            2 PRLSSLTVGSCNKLKALPD-YLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDC   64 (133)
Q Consensus         2 ~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c   64 (133)
                      |+|++|+++++ .+..+|+ .+..+++|+.|+++++. +..++.+   .+..+++|++|+++++
T Consensus         1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~---~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNN-LTSIPPD---AFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TTESEEEETSS-TESEECTTTTTTGTTESEEEETSSS-ESEEETT---TTTTSTTESEEEETSS
T ss_pred             CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCc-cCccCHH---HHcCCCCCCEEeCcCC
Confidence            45566666654 5555552 34556666666666532 5555543   4555666666665554

...

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=98.63  E-value=3.2e-09  Score=70.87  Aligned_cols=78  Identities=26%  Similarity=0.445  Sum_probs=45.7

Q ss_pred             ccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCCccEE
Q 048450            4 LSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTLQEL   83 (133)
Q Consensus         4 L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L   83 (133)
                      ...|.+++ +++..+|+.+..+.+|+.|++++ .+++.+|.    +++.++.|+.|.+. .+.+..+|.+++.++.|+.|
T Consensus        35 ITrLtLSH-NKl~~vppnia~l~nlevln~~n-nqie~lp~----~issl~klr~lnvg-mnrl~~lprgfgs~p~levl  107 (264)
T KOG0617|consen   35 ITRLTLSH-NKLTVVPPNIAELKNLEVLNLSN-NQIEELPT----SISSLPKLRILNVG-MNRLNILPRGFGSFPALEVL  107 (264)
T ss_pred             hhhhhccc-CceeecCCcHHHhhhhhhhhccc-chhhhcCh----hhhhchhhhheecc-hhhhhcCccccCCCchhhhh
Confidence            34455555 35555666666666666666665 34666666    56666666666553 24455566666666666666


Q ss_pred             EEecC
Q 048450           84 TIHRC   88 (133)
Q Consensus        84 ~i~~c   88 (133)
                      ++..+
T Consensus       108 dltyn  112 (264)
T KOG0617|consen  108 DLTYN  112 (264)
T ss_pred             hcccc
Confidence            66543

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.56  E-value=2.3e-07  Score=51.43  Aligned_cols=59  Identities=24%  Similarity=0.370  Sum_probs=50.3

Q ss_pred             CCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCc-CCCCCCCccEEEEecCc
Q 048450           26 TALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPD-YLLQTTTLQELTIHRCP   89 (133)
Q Consensus        26 ~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~i~~c~   89 (133)
                      |+|+.|+++++ ++..+|.+   .+..+++|++|++++ +.++.++. .+.++++|++|+++++.
T Consensus         1 p~L~~L~l~~n-~l~~i~~~---~f~~l~~L~~L~l~~-N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSNN-KLTEIPPD---SFSNLPNLETLDLSN-NNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETSS-TESEECTT---TTTTGTTESEEEETS-SSESEEETTTTTTSTTESEEEETSSS
T ss_pred             CcCcEEECCCC-CCCccCHH---HHcCCCCCCEeEccC-CccCccCHHHHcCCCCCCEEeCcCCc
Confidence            57999999997 69999875   788999999999997 55778875 57899999999999875

...

>PLN03150 hypothetical protein; Provisional

Probab=98.46  E-value=2.8e-07  Score=72.81  Aligned_cols=82  Identities=18%  Similarity=0.212  Sum_probs=67.4

Q ss_pred             ccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCCccEE
Q 048450            4 LSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTLQEL   83 (133)
Q Consensus         4 L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L   83 (133)
                      ++.|+++++..-+.+|..++.+++|+.|+++++...+.+|.    .++.+++|+.|+++++...+.+|..+.++++|+.|
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~----~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L  495 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPP----SLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRIL  495 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCCh----HHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEE
Confidence            56678888665567888888899999999998765567887    78889999999998877666888888889999999


Q ss_pred             EEecCc
Q 048450           84 TIHRCP   89 (133)
Q Consensus        84 ~i~~c~   89 (133)
                      +++++.
T Consensus       496 ~Ls~N~  501 (623)
T PLN03150        496 NLNGNS  501 (623)
T ss_pred             ECcCCc
Confidence            998875

>PLN03150 hypothetical protein; Provisional

Probab=98.41  E-value=5.4e-07  Score=71.22  Aligned_cols=88  Identities=15%  Similarity=0.116  Sum_probs=73.0

Q ss_pred             CCCccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCC-CC
Q 048450            1 MPRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQT-TT   79 (133)
Q Consensus         1 l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l-~~   79 (133)
                      +++|+.|+++++...+.+|..++.+++|+.|+++++...+.+|.    .++.+++|+.|+++++...+.+|..+... .+
T Consensus       441 L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~----~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~  516 (623)
T PLN03150        441 LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPE----SLGQLTSLRILNLNGNSLSGRVPAALGGRLLH  516 (623)
T ss_pred             CCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCch----HHhcCCCCCEEECcCCcccccCChHHhhcccc
Confidence            46899999999866678998899999999999999876668888    89999999999999988777899877643 35


Q ss_pred             ccEEEEecCchhH
Q 048450           80 LQELTIHRCPLLE   92 (133)
Q Consensus        80 L~~L~i~~c~~l~   92 (133)
                      +..+++.+++.+.
T Consensus       517 ~~~l~~~~N~~lc  529 (623)
T PLN03150        517 RASFNFTDNAGLC  529 (623)
T ss_pred             CceEEecCCcccc
Confidence            6778888776443

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.38  E-value=1.3e-07  Score=76.99  Aligned_cols=83  Identities=23%  Similarity=0.360  Sum_probs=69.6

Q ss_pred             CCCccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCCc
Q 048450            1 MPRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTL   80 (133)
Q Consensus         1 l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L   80 (133)
                      +|.|++|++++|..+..+|..++.|-+|++|++++. .+..+|.    +++++..|.+|++..+..+..+|.....+++|
T Consensus       570 m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t-~I~~LP~----~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~L  644 (889)
T KOG4658|consen  570 LPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDT-GISHLPS----GLGNLKKLIYLNLEVTGRLESIPGILLELQSL  644 (889)
T ss_pred             CcceEEEECCCCCccCcCChHHhhhhhhhcccccCC-Cccccch----HHHHHHhhheeccccccccccccchhhhcccc
Confidence            578899999988899999999999999999999884 4888998    88899999999998877777776655668888


Q ss_pred             cEEEEecC
Q 048450           81 QELTIHRC   88 (133)
Q Consensus        81 ~~L~i~~c   88 (133)
                      ++|.+..-
T Consensus       645 r~L~l~~s  652 (889)
T KOG4658|consen  645 RVLRLPRS  652 (889)
T ss_pred             cEEEeecc
Confidence            88888653

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.34  E-value=2.9e-07  Score=68.51  Aligned_cols=84  Identities=23%  Similarity=0.338  Sum_probs=68.6

Q ss_pred             CCCccEEeecCCCCCccCCccCCCCCCccEEEeccCC----------------------CCccccccccccCCCCCCccE
Q 048450            1 MPRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCD----------------------LLEELPILEDRRTTDIPRLTS   58 (133)
Q Consensus         1 l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~----------------------~l~~lp~~~~~~~~~l~~L~~   58 (133)
                      +++|..|++++ +.+-++|..++.+-.|+.|+++.+.                      ++++++..   ++++|.+|..
T Consensus       434 l~kLt~L~L~N-N~Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~---~l~nm~nL~t  509 (565)
T KOG0472|consen  434 LQKLTFLDLSN-NLLNDLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPS---GLKNMRNLTT  509 (565)
T ss_pred             hhcceeeeccc-chhhhcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChH---Hhhhhhhcce
Confidence            46778888988 4788899889999999999998742                      23444441   4788999999


Q ss_pred             EeecCCCCCCccCcCCCCCCCccEEEEecCc
Q 048450           59 LWISDCPNLKVLPDYLLQTTTLQELTIHRCP   89 (133)
Q Consensus        59 L~l~~c~~l~~lp~~~~~l~~L~~L~i~~c~   89 (133)
                      |++.. +.+..+|+.++++++|++|.+++++
T Consensus       510 LDL~n-Ndlq~IPp~LgnmtnL~hLeL~gNp  539 (565)
T KOG0472|consen  510 LDLQN-NDLQQIPPILGNMTNLRHLELDGNP  539 (565)
T ss_pred             eccCC-CchhhCChhhccccceeEEEecCCc
Confidence            99976 6789999999999999999999987

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=98.33  E-value=5.3e-08  Score=65.13  Aligned_cols=82  Identities=23%  Similarity=0.284  Sum_probs=68.6

Q ss_pred             CCccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCC-CCccCcCCCCCCCc
Q 048450            2 PRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPN-LKVLPDYLLQTTTL   80 (133)
Q Consensus         2 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~-l~~lp~~~~~l~~L   80 (133)
                      .+|++|++.+ +.++.+|..+..++.|+.|++.- ..+.-+|.    ++|+++.|+.|++.+.+. -.++|..+..++.|
T Consensus        56 ~nlevln~~n-nqie~lp~~issl~klr~lnvgm-nrl~~lpr----gfgs~p~levldltynnl~e~~lpgnff~m~tl  129 (264)
T KOG0617|consen   56 KNLEVLNLSN-NQIEELPTSISSLPKLRILNVGM-NRLNILPR----GFGSFPALEVLDLTYNNLNENSLPGNFFYMTTL  129 (264)
T ss_pred             hhhhhhhccc-chhhhcChhhhhchhhhheecch-hhhhcCcc----ccCCCchhhhhhccccccccccCCcchhHHHHH
Confidence            4788899988 58999999999999999999874 56888899    899999999999987542 34688888788889


Q ss_pred             cEEEEecCc
Q 048450           81 QELTIHRCP   89 (133)
Q Consensus        81 ~~L~i~~c~   89 (133)
                      +.|++.++.
T Consensus       130 ralyl~dnd  138 (264)
T KOG0617|consen  130 RALYLGDND  138 (264)
T ss_pred             HHHHhcCCC
Confidence            988888764

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.24  E-value=5.7e-08  Score=74.70  Aligned_cols=99  Identities=23%  Similarity=0.334  Sum_probs=54.5

Q ss_pred             ccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCCccEE
Q 048450            4 LSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTLQEL   83 (133)
Q Consensus         4 L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L   83 (133)
                      |+.|.+++ ++++.+|+.++.++.|..|+.+.|. +..+|.    .++.+.+|+.|.++. +.+..+|+.+..+ .|..|
T Consensus       145 Lkvli~sN-Nkl~~lp~~ig~~~tl~~ld~s~ne-i~slps----ql~~l~slr~l~vrR-n~l~~lp~El~~L-pLi~l  216 (722)
T KOG0532|consen  145 LKVLIVSN-NKLTSLPEEIGLLPTLAHLDVSKNE-IQSLPS----QLGYLTSLRDLNVRR-NHLEDLPEELCSL-PLIRL  216 (722)
T ss_pred             ceeEEEec-CccccCCcccccchhHHHhhhhhhh-hhhchH----HhhhHHHHHHHHHhh-hhhhhCCHHHhCC-ceeee
Confidence            55665665 4677777777766777777776643 555555    555555555555544 3344455554444 55555


Q ss_pred             EEecCchhHHhhcCCCCCCCcccCCCCceEEcC
Q 048450           84 TIHRCPLLENRYREGKGEDWHKISHIPHIKWSI  116 (133)
Q Consensus        84 ~i~~c~~l~~~~~~~~~~~~~~i~~l~~l~~~~  116 (133)
                      |++.++ +.     ..+..+-++.|+++|.+.+
T Consensus       217 DfScNk-is-----~iPv~fr~m~~Lq~l~Len  243 (722)
T KOG0532|consen  217 DFSCNK-IS-----YLPVDFRKMRHLQVLQLEN  243 (722)
T ss_pred             ecccCc-ee-----ecchhhhhhhhheeeeecc
Confidence            555322 22     1233445556666665553

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.21  E-value=2.6e-06  Score=64.02  Aligned_cols=60  Identities=28%  Similarity=0.533  Sum_probs=36.2

Q ss_pred             CCccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccC
Q 048450            2 PRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLP   71 (133)
Q Consensus         2 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp   71 (133)
                      .+++.|++++| .++.+|.   --.+|+.|.+.+|..++.+|.    .+  .++|++|.+.+|..+..+|
T Consensus        52 ~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~----~L--P~nLe~L~Ls~Cs~L~sLP  111 (426)
T PRK15386         52 RASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPG----SI--PEGLEKLTVCHCPEISGLP  111 (426)
T ss_pred             cCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCc----hh--hhhhhheEccCcccccccc
Confidence            45677777776 6666661   112577777777777766665    33  2456666666665454444

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.18  E-value=1.1e-06  Score=59.01  Aligned_cols=76  Identities=21%  Similarity=0.324  Sum_probs=17.8

Q ss_pred             ccEEeecCCCCCccCCccCC-CCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCC-CCCCCcc
Q 048450            4 LSSLTVGSCNKLKALPDYLL-QTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYL-LQTTTLQ   81 (133)
Q Consensus         4 L~~L~l~~~~~l~~lp~~~~-~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~-~~l~~L~   81 (133)
                      +++|+++++ .+..+. .++ .+.+|+.|+++++. ++.++     .+..++.|++|++++ +.++++.+++ ..+++|+
T Consensus        21 ~~~L~L~~n-~I~~Ie-~L~~~l~~L~~L~Ls~N~-I~~l~-----~l~~L~~L~~L~L~~-N~I~~i~~~l~~~lp~L~   91 (175)
T PF14580_consen   21 LRELNLRGN-QISTIE-NLGATLDKLEVLDLSNNQ-ITKLE-----GLPGLPRLKTLDLSN-NRISSISEGLDKNLPNLQ   91 (175)
T ss_dssp             -----------------S--TT-TT--EEE-TTS---S--T-----T----TT--EEE--S-S---S-CHHHHHH-TT--
T ss_pred             ccccccccc-cccccc-chhhhhcCCCEEECCCCC-Ccccc-----CccChhhhhhcccCC-CCCCccccchHHhCCcCC
Confidence            455666553 343332 333 35566666666643 55553     244556666666655 4455554333 2355666


Q ss_pred             EEEEecC
Q 048450           82 ELTIHRC   88 (133)
Q Consensus        82 ~L~i~~c   88 (133)
                      +|+++++
T Consensus        92 ~L~L~~N   98 (175)
T PF14580_consen   92 ELYLSNN   98 (175)
T ss_dssp             EEE-TTS
T ss_pred             EEECcCC
Confidence            6666543

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.08  E-value=6.3e-06  Score=42.75  Aligned_cols=40  Identities=18%  Similarity=0.364  Sum_probs=24.4

Q ss_pred             CCccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCcccc
Q 048450            2 PRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELP   43 (133)
Q Consensus         2 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp   43 (133)
                      ++|++|+++++ .+..+|+.++++++|+.|++++++ +.+++
T Consensus         1 ~~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N~-i~~i~   40 (44)
T PF12799_consen    1 KNLEELDLSNN-QITDLPPELSNLPNLETLNLSNNP-ISDIS   40 (44)
T ss_dssp             TT-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSSC-CSBEG
T ss_pred             CcceEEEccCC-CCcccCchHhCCCCCCEEEecCCC-CCCCc
Confidence            46677777764 566666556677777777777653 55554

...

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.04  E-value=3e-06  Score=56.85  Aligned_cols=82  Identities=18%  Similarity=0.334  Sum_probs=37.3

Q ss_pred             CCCccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccC-CCCCCccEEeecCCCCCCccCc--CCCCC
Q 048450            1 MPRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRT-TDIPRLTSLWISDCPNLKVLPD--YLLQT   77 (133)
Q Consensus         1 l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~-~~l~~L~~L~l~~c~~l~~lp~--~~~~l   77 (133)
                      +.+|+.|+++++ .+..++ ++..++.|+.|+++++ .+++++.    .+ ..+++|++|.+++ +.+..+-.  .+..+
T Consensus        41 l~~L~~L~Ls~N-~I~~l~-~l~~L~~L~~L~L~~N-~I~~i~~----~l~~~lp~L~~L~L~~-N~I~~l~~l~~L~~l  112 (175)
T PF14580_consen   41 LDKLEVLDLSNN-QITKLE-GLPGLPRLKTLDLSNN-RISSISE----GLDKNLPNLQELYLSN-NKISDLNELEPLSSL  112 (175)
T ss_dssp             -TT--EEE-TTS---S--T-T----TT--EEE--SS----S-CH----HHHHH-TT--EEE-TT-S---SCCCCGGGGG-
T ss_pred             hcCCCEEECCCC-CCcccc-CccChhhhhhcccCCC-CCCcccc----chHHhCCcCCEEECcC-CcCCChHHhHHHHcC
Confidence            357899999995 777776 6778999999999985 5877754    34 3589999999987 55665542  34578


Q ss_pred             CCccEEEEecCch
Q 048450           78 TTLQELTIHRCPL   90 (133)
Q Consensus        78 ~~L~~L~i~~c~~   90 (133)
                      ++|+.|++.++|-
T Consensus       113 ~~L~~L~L~~NPv  125 (175)
T PF14580_consen  113 PKLRVLSLEGNPV  125 (175)
T ss_dssp             TT--EEE-TT-GG
T ss_pred             CCcceeeccCCcc
Confidence            8999999999883

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=97.90  E-value=1.9e-06  Score=69.62  Aligned_cols=78  Identities=27%  Similarity=0.399  Sum_probs=52.6

Q ss_pred             CCCccEEeecCCCCCccCCc-cCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCC
Q 048450            1 MPRLSSLTVGSCNKLKALPD-YLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTT   79 (133)
Q Consensus         1 l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~   79 (133)
                      +++|+.|++++ +.+..||. .+.++..|+.|+++++ +++.+|.    .+.+++.|++|...+ +.+..+| .+..++.
T Consensus       382 ~~hLKVLhLsy-NrL~~fpas~~~kle~LeeL~LSGN-kL~~Lp~----tva~~~~L~tL~ahs-N~l~~fP-e~~~l~q  453 (1081)
T KOG0618|consen  382 FKHLKVLHLSY-NRLNSFPASKLRKLEELEELNLSGN-KLTTLPD----TVANLGRLHTLRAHS-NQLLSFP-ELAQLPQ  453 (1081)
T ss_pred             ccceeeeeecc-cccccCCHHHHhchHHhHHHhcccc-hhhhhhH----HHHhhhhhHHHhhcC-Cceeech-hhhhcCc
Confidence            46788999988 47888884 4578888888888884 4777776    565666666665443 4455556 4445556


Q ss_pred             ccEEEEe
Q 048450           80 LQELTIH   86 (133)
Q Consensus        80 L~~L~i~   86 (133)
                      |+.+|++
T Consensus       454 L~~lDlS  460 (1081)
T KOG0618|consen  454 LKVLDLS  460 (1081)
T ss_pred             ceEEecc
Confidence            6666665

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=97.88  E-value=3.2e-07  Score=71.89  Aligned_cols=77  Identities=26%  Similarity=0.414  Sum_probs=35.1

Q ss_pred             ccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCCccEE
Q 048450            4 LSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTLQEL   83 (133)
Q Consensus         4 L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L   83 (133)
                      |..++++. +.+..+|+.+..+++|+.|+++++ +++.+..    ..+...+|++|.++. +.+..+|..+..++.|+.|
T Consensus       224 L~dvDlS~-N~Lp~vPecly~l~~LrrLNLS~N-~iteL~~----~~~~W~~lEtLNlSr-NQLt~LP~avcKL~kL~kL  296 (1255)
T KOG0444|consen  224 LRDVDLSE-NNLPIVPECLYKLRNLRRLNLSGN-KITELNM----TEGEWENLETLNLSR-NQLTVLPDAVCKLTKLTKL  296 (1255)
T ss_pred             hhhccccc-cCCCcchHHHhhhhhhheeccCcC-ceeeeec----cHHHHhhhhhhcccc-chhccchHHHhhhHHHHHH
Confidence            33344443 234444444444555555555542 2433333    233333444444444 3455555555555555555


Q ss_pred             EEec
Q 048450           84 TIHR   87 (133)
Q Consensus        84 ~i~~   87 (133)
                      ...+
T Consensus       297 y~n~  300 (1255)
T KOG0444|consen  297 YANN  300 (1255)
T ss_pred             Hhcc
Confidence            5444

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.88  E-value=5.5e-06  Score=67.78  Aligned_cols=85  Identities=22%  Similarity=0.284  Sum_probs=69.5

Q ss_pred             CccEEeecCCCC-CccCCc-cCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCCc
Q 048450            3 RLSSLTVGSCNK-LKALPD-YLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTL   80 (133)
Q Consensus         3 ~L~~L~l~~~~~-l~~lp~-~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L   80 (133)
                      .|++|-+..... +..++. .+..++.|+.|++++|..+..+|.    .++.+-+|++|++++ ..++.+|.+++++..|
T Consensus       546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~----~I~~Li~LryL~L~~-t~I~~LP~~l~~Lk~L  620 (889)
T KOG4658|consen  546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPS----SIGELVHLRYLDLSD-TGISHLPSGLGNLKKL  620 (889)
T ss_pred             ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCCh----HHhhhhhhhcccccC-CCccccchHHHHHHhh
Confidence            466666665432 555553 367899999999999999999999    899999999999988 4588999999999999


Q ss_pred             cEEEEecCchhH
Q 048450           81 QELTIHRCPLLE   92 (133)
Q Consensus        81 ~~L~i~~c~~l~   92 (133)
                      .+|++..+..+.
T Consensus       621 ~~Lnl~~~~~l~  632 (889)
T KOG4658|consen  621 IYLNLEVTGRLE  632 (889)
T ss_pred             heeccccccccc
Confidence            999999776544

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=97.80  E-value=3.4e-06  Score=66.32  Aligned_cols=82  Identities=24%  Similarity=0.353  Sum_probs=59.8

Q ss_pred             CccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCCccE
Q 048450            3 RLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTLQE   82 (133)
Q Consensus         3 ~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~   82 (133)
                      -|..|+++. +++...|..+....++-.|++++ .+++.||..   -+-+++-|-+|+++. +.+..+|+.+.++..|+.
T Consensus       104 dLt~lDLSh-NqL~EvP~~LE~AKn~iVLNLS~-N~IetIPn~---lfinLtDLLfLDLS~-NrLe~LPPQ~RRL~~Lqt  177 (1255)
T KOG0444|consen  104 DLTILDLSH-NQLREVPTNLEYAKNSIVLNLSY-NNIETIPNS---LFINLTDLLFLDLSN-NRLEMLPPQIRRLSMLQT  177 (1255)
T ss_pred             cceeeecch-hhhhhcchhhhhhcCcEEEEccc-CccccCCch---HHHhhHhHhhhcccc-chhhhcCHHHHHHhhhhh
Confidence            355667776 46667776666666777777777 357777762   334677788888877 668888888888888999


Q ss_pred             EEEecCch
Q 048450           83 LTIHRCPL   90 (133)
Q Consensus        83 L~i~~c~~   90 (133)
                      |.++++|.
T Consensus       178 L~Ls~NPL  185 (1255)
T KOG0444|consen  178 LKLSNNPL  185 (1255)
T ss_pred             hhcCCChh
Confidence            99988874

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.72  E-value=5.9e-05  Score=39.06  Aligned_cols=40  Identities=25%  Similarity=0.533  Sum_probs=26.4

Q ss_pred             CCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccC
Q 048450           26 TALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLP   71 (133)
Q Consensus        26 ~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp   71 (133)
                      ++|++|+++++ +++.+|.    .++.+++|+.|++++++ +++++
T Consensus         1 ~~L~~L~l~~N-~i~~l~~----~l~~l~~L~~L~l~~N~-i~~i~   40 (44)
T PF12799_consen    1 KNLEELDLSNN-QITDLPP----ELSNLPNLETLNLSNNP-ISDIS   40 (44)
T ss_dssp             TT-SEEEETSS-S-SSHGG----HGTTCTTSSEEEETSSC-CSBEG
T ss_pred             CcceEEEccCC-CCcccCc----hHhCCCCCCEEEecCCC-CCCCc
Confidence            46777888775 4777776    57778888888887753 55554

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.61  E-value=9.9e-05  Score=55.66  Aligned_cols=77  Identities=29%  Similarity=0.596  Sum_probs=55.6

Q ss_pred             CccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeec--CCCCCCccCcCCCCC---
Q 048450            3 RLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWIS--DCPNLKVLPDYLLQT---   77 (133)
Q Consensus         3 ~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~--~c~~l~~lp~~~~~l---   77 (133)
                      +|++|.+++|..++.+|..+.  ++|+.|++.+|..+..+|.    .      |+.|.+.  .|..++.+|.++..+   
T Consensus        73 sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~----s------Le~L~L~~n~~~~L~~LPssLk~L~I~  140 (426)
T PRK15386         73 ELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE----S------VRSLEIKGSATDSIKNVPNGLTSLSIN  140 (426)
T ss_pred             CCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccc----c------cceEEeCCCCCcccccCcchHhheecc
Confidence            699999999999998886442  5899999999988888887    4      3344443  234466666555333   


Q ss_pred             ---------------CCccEEEEecCchh
Q 048450           78 ---------------TTLQELTIHRCPLL   91 (133)
Q Consensus        78 ---------------~~L~~L~i~~c~~l   91 (133)
                                     ++|+.|++.+|..+
T Consensus       141 ~~n~~~~~~lp~~LPsSLk~L~Is~c~~i  169 (426)
T PRK15386        141 SYNPENQARIDNLISPSLKTLSLTGCSNI  169 (426)
T ss_pred             ccccccccccccccCCcccEEEecCCCcc
Confidence                           37888999888754

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=97.58  E-value=6.4e-06  Score=61.57  Aligned_cols=70  Identities=24%  Similarity=0.312  Sum_probs=57.3

Q ss_pred             CCccCCccC-CCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCCccEEEEecCch
Q 048450           14 KLKALPDYL-LQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTLQELTIHRCPL   90 (133)
Q Consensus        14 ~l~~lp~~~-~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~i~~c~~   90 (133)
                      .++.+|... .+++++..|++.+ .+++++|.    ++..+.+|++|++++ +.+.++|..++++ .|+.|.+.|+|.
T Consensus       239 ~i~~lpae~~~~L~~l~vLDLRd-Nklke~Pd----e~clLrsL~rLDlSN-N~is~Lp~sLgnl-hL~~L~leGNPl  309 (565)
T KOG0472|consen  239 QIEMLPAEHLKHLNSLLVLDLRD-NKLKEVPD----EICLLRSLERLDLSN-NDISSLPYSLGNL-HLKFLALEGNPL  309 (565)
T ss_pred             HHHhhHHHHhcccccceeeeccc-cccccCch----HHHHhhhhhhhcccC-CccccCCcccccc-eeeehhhcCCch
Confidence            344455333 4789999999998 45999999    788899999999987 6689999999999 999999999873

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=97.56  E-value=6.3e-06  Score=63.78  Aligned_cols=110  Identities=28%  Similarity=0.402  Sum_probs=63.1

Q ss_pred             ccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCCccEE
Q 048450            4 LSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTLQEL   83 (133)
Q Consensus         4 L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L   83 (133)
                      |..|+|+. +.+..+|..+..++ |+.|-+++ .+++.+|+    .++....|..|+.+. +.+..+|..++.+.+|+.|
T Consensus       123 lt~l~ls~-NqlS~lp~~lC~lp-Lkvli~sN-Nkl~~lp~----~ig~~~tl~~ld~s~-nei~slpsql~~l~slr~l  194 (722)
T KOG0532|consen  123 LTFLDLSS-NQLSHLPDGLCDLP-LKVLIVSN-NKLTSLPE----EIGLLPTLAHLDVSK-NEIQSLPSQLGYLTSLRDL  194 (722)
T ss_pred             HHHhhhcc-chhhcCChhhhcCc-ceeEEEec-CccccCCc----ccccchhHHHhhhhh-hhhhhchHHhhhHHHHHHH
Confidence            34445554 34555555555544 56665555 34666666    566666666666655 3466666666666666666


Q ss_pred             EEecCchhHHhhcCCCCCCCcccCCCCceEEcCccceeeeeeeeccccc
Q 048450           84 TIHRCPLLENRYREGKGEDWHKISHIPHIKWSITRWCCRITSFERRRCR  132 (133)
Q Consensus        84 ~i~~c~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~l~s~~~~~c~  132 (133)
                      .++.+..+.      .++   .+..++-++++  ..|+++..+|...|+
T Consensus       195 ~vrRn~l~~------lp~---El~~LpLi~lD--fScNkis~iPv~fr~  232 (722)
T KOG0532|consen  195 NVRRNHLED------LPE---ELCSLPLIRLD--FSCNKISYLPVDFRK  232 (722)
T ss_pred             HHhhhhhhh------CCH---HHhCCceeeee--cccCceeecchhhhh
Confidence            665433211      121   23355655555  448899999887664

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=97.42  E-value=3.6e-05  Score=55.49  Aligned_cols=11  Identities=18%  Similarity=0.314  Sum_probs=5.1

Q ss_pred             CCccEEEEecC
Q 048450           78 TTLQELTIHRC   88 (133)
Q Consensus        78 ~~L~~L~i~~c   88 (133)
                      ++|++|++++|
T Consensus       193 ~~L~~L~L~~n  203 (319)
T cd00116         193 CNLEVLDLNNN  203 (319)
T ss_pred             CCCCEEeccCC
Confidence            34444444444

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=97.34  E-value=0.00022  Score=55.88  Aligned_cols=38  Identities=21%  Similarity=0.408  Sum_probs=20.6

Q ss_pred             cEEeecCCCCCccCC-ccCCCCCCccEEEeccCCCCccccc
Q 048450            5 SSLTVGSCNKLKALP-DYLLQTTALQELSICSCDLLEELPI   44 (133)
Q Consensus         5 ~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~lp~   44 (133)
                      ++|+++++ ++.++. ..+.++++|+.+++.++ .++.+|.
T Consensus        81 ~~LdlsnN-kl~~id~~~f~nl~nLq~v~l~~N-~Lt~IP~  119 (873)
T KOG4194|consen   81 QTLDLSNN-KLSHIDFEFFYNLPNLQEVNLNKN-ELTRIPR  119 (873)
T ss_pred             eeeecccc-ccccCcHHHHhcCCcceeeeeccc-hhhhccc
Confidence            34666663 444443 34456666666666553 3555554

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=97.31  E-value=8.6e-05  Score=58.08  Aligned_cols=114  Identities=17%  Similarity=0.284  Sum_probs=67.4

Q ss_pred             CCccEEeecCCCCCccCCcc-CCCCCCccEEEeccCC-----------------------CCccccccccccCCCCCCcc
Q 048450            2 PRLSSLTVGSCNKLKALPDY-LLQTTALQELSICSCD-----------------------LLEELPILEDRRTTDIPRLT   57 (133)
Q Consensus         2 ~~L~~L~l~~~~~l~~lp~~-~~~l~~L~~L~l~~c~-----------------------~l~~lp~~~~~~~~~l~~L~   57 (133)
                      .+|.+|.++. +.+..+|.. +..|+.|+.|++..+.                       .+..+.++   .+-.+..++
T Consensus       197 nsL~tlkLsr-NrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG---~Fy~l~kme  272 (873)
T KOG4194|consen  197 NSLLTLKLSR-NRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDG---AFYGLEKME  272 (873)
T ss_pred             chheeeeccc-CcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCc---ceeeecccc
Confidence            3566677776 366667733 3446666666665431                       12222221   333466777


Q ss_pred             EEeecCCCCCCccCc-CCCCCCCccEEEEecCchhHHhhcCCCCCCCcccCCCCceEEcCccceeeeeeeecc
Q 048450           58 SLWISDCPNLKVLPD-YLLQTTTLQELTIHRCPLLENRYREGKGEDWHKISHIPHIKWSITRWCCRITSFERR  129 (133)
Q Consensus        58 ~L~l~~c~~l~~lp~-~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~l~s~~~~  129 (133)
                      +|++.. +.+..+.+ ++.++++|++|+++.+.     +.....+.|..-+.+..|.+..    +.+++|+.+
T Consensus       273 ~l~L~~-N~l~~vn~g~lfgLt~L~~L~lS~Na-----I~rih~d~WsftqkL~~LdLs~----N~i~~l~~~  335 (873)
T KOG4194|consen  273 HLNLET-NRLQAVNEGWLFGLTSLEQLDLSYNA-----IQRIHIDSWSFTQKLKELDLSS----NRITRLDEG  335 (873)
T ss_pred             eeeccc-chhhhhhcccccccchhhhhccchhh-----hheeecchhhhcccceeEeccc----cccccCChh
Confidence            777766 44656553 46678888888888754     2223455677777777777774    356666554

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=97.23  E-value=0.00065  Score=55.09  Aligned_cols=31  Identities=26%  Similarity=0.314  Sum_probs=19.0

Q ss_pred             CccEEeecCCCCCCccCcCCCCCCCccEEEEecC
Q 048450           55 RLTSLWISDCPNLKVLPDYLLQTTTLQELTIHRC   88 (133)
Q Consensus        55 ~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~i~~c   88 (133)
                      +|+.|++++ +.+..+|..+.  ++|+.|++++|
T Consensus       263 ~L~~L~Ls~-N~L~~LP~~l~--~sL~~L~Ls~N  293 (754)
T PRK15370        263 ALQSLDLFH-NKISCLPENLP--EELRYLSVYDN  293 (754)
T ss_pred             CCCEEECcC-CccCccccccC--CCCcEEECCCC
Confidence            566676654 45666665543  36777777665

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=97.21  E-value=0.00042  Score=56.25  Aligned_cols=34  Identities=24%  Similarity=0.363  Sum_probs=21.8

Q ss_pred             CccEEeecCCCCCCccCcCCCCCCCccEEEEecCc
Q 048450           55 RLTSLWISDCPNLKVLPDYLLQTTTLQELTIHRCP   89 (133)
Q Consensus        55 ~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~i~~c~   89 (133)
                      +|+.|++++ +.++.+|..+..+++|+.|++++++
T Consensus       423 ~L~~L~Ls~-NqLt~LP~sl~~L~~L~~LdLs~N~  456 (788)
T PRK15387        423 GLLSLSVYR-NQLTRLPESLIHLSSETTVNLEGNP  456 (788)
T ss_pred             hhhhhhhcc-CcccccChHHhhccCCCeEECCCCC
Confidence            345555554 3456677666677777778777765

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.11  E-value=0.00015  Score=58.17  Aligned_cols=80  Identities=19%  Similarity=0.226  Sum_probs=37.9

Q ss_pred             CCCccEEeecCCCCC-ccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccC--cCCCCC
Q 048450            1 MPRLSSLTVGSCNKL-KALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLP--DYLLQT   77 (133)
Q Consensus         1 l~~L~~L~l~~~~~l-~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp--~~~~~l   77 (133)
                      ||+|++|.+.+-... .++..-..++|+|..|||+++. ++.+ .    +++++++|+.|.+.+..... -.  ..+.++
T Consensus       147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl-~----GIS~LknLq~L~mrnLe~e~-~~~l~~LF~L  219 (699)
T KOG3665|consen  147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNL-S----GISRLKNLQVLSMRNLEFES-YQDLIDLFNL  219 (699)
T ss_pred             CcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCc-H----HHhccccHHHHhccCCCCCc-hhhHHHHhcc
Confidence            455555555552111 1112223456666666666643 5544 2    45556666655555433221 11  123355


Q ss_pred             CCccEEEEec
Q 048450           78 TTLQELTIHR   87 (133)
Q Consensus        78 ~~L~~L~i~~   87 (133)
                      ++|+.|||+.
T Consensus       220 ~~L~vLDIS~  229 (699)
T KOG3665|consen  220 KKLRVLDISR  229 (699)
T ss_pred             cCCCeeeccc
Confidence            6666666654

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=97.06  E-value=9.2e-05  Score=60.23  Aligned_cols=80  Identities=20%  Similarity=0.338  Sum_probs=66.2

Q ss_pred             CccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCCccE
Q 048450            3 RLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTLQE   82 (133)
Q Consensus         3 ~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~   82 (133)
                      +|+.|++++ .....+|..+..++.|+.|.++.+ .+.++|.    ..+++.+|+++.+. |+.+..+|.++..+.+|+.
T Consensus        46 ~L~~l~lsn-n~~~~fp~~it~l~~L~~ln~s~n-~i~~vp~----s~~~~~~l~~lnL~-~n~l~~lP~~~~~lknl~~  118 (1081)
T KOG0618|consen   46 KLKSLDLSN-NQISSFPIQITLLSHLRQLNLSRN-YIRSVPS----SCSNMRNLQYLNLK-NNRLQSLPASISELKNLQY  118 (1081)
T ss_pred             eeEEeeccc-cccccCCchhhhHHHHhhcccchh-hHhhCch----hhhhhhcchhheec-cchhhcCchhHHhhhcccc
Confidence            378899998 477788888888888999998874 4888887    78889999999885 4788899988888889999


Q ss_pred             EEEecCc
Q 048450           83 LTIHRCP   89 (133)
Q Consensus        83 L~i~~c~   89 (133)
                      |+++.+.
T Consensus       119 LdlS~N~  125 (1081)
T KOG0618|consen  119 LDLSFNH  125 (1081)
T ss_pred             cccchhc
Confidence            9888653

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=96.98  E-value=0.00015  Score=52.21  Aligned_cols=83  Identities=22%  Similarity=0.151  Sum_probs=41.8

Q ss_pred             CCccEEeecCCCCCccCCccCCCC---CCccEEEeccCCCCc-----cccccccccCCCC-CCccEEeecCCCCCC----
Q 048450            2 PRLSSLTVGSCNKLKALPDYLLQT---TALQELSICSCDLLE-----ELPILEDRRTTDI-PRLTSLWISDCPNLK----   68 (133)
Q Consensus         2 ~~L~~L~l~~~~~l~~lp~~~~~l---~~L~~L~l~~c~~l~-----~lp~~~~~~~~~l-~~L~~L~l~~c~~l~----   68 (133)
                      ++|+.|++++|......+..+..+   ++|+.|++++|. +.     .+..    .+..+ ++|+.|++++|....    
T Consensus        81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~-~~~~~~~~l~~----~l~~~~~~L~~L~L~~n~l~~~~~~  155 (319)
T cd00116          81 CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNG-LGDRGLRLLAK----GLKDLPPALEKLVLGRNRLEGASCE  155 (319)
T ss_pred             CceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCc-cchHHHHHHHH----HHHhCCCCceEEEcCCCcCCchHHH
Confidence            456666666654432233222222   336677776654 22     1112    23344 667777777655321    


Q ss_pred             ccCcCCCCCCCccEEEEecCc
Q 048450           69 VLPDYLLQTTTLQELTIHRCP   89 (133)
Q Consensus        69 ~lp~~~~~l~~L~~L~i~~c~   89 (133)
                      .++..+..++.|+.|++++|.
T Consensus       156 ~~~~~~~~~~~L~~L~l~~n~  176 (319)
T cd00116         156 ALAKALRANRDLKELNLANNG  176 (319)
T ss_pred             HHHHHHHhCCCcCEEECcCCC
Confidence            233334445567777777664

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=96.90  E-value=0.00019  Score=53.64  Aligned_cols=79  Identities=27%  Similarity=0.416  Sum_probs=39.4

Q ss_pred             CccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCCccE
Q 048450            3 RLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTLQE   82 (133)
Q Consensus         3 ~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~   82 (133)
                      +|+.|++++ ..+..+|..++.++.|+.|++.+++ +..+|.    ..+..+.|+.|++++ +.+..+|..+.....|+.
T Consensus       141 nL~~L~l~~-N~i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~----~~~~~~~L~~L~ls~-N~i~~l~~~~~~~~~L~~  213 (394)
T COG4886         141 NLKELDLSD-NKIESLPSPLRNLPNLKNLDLSFND-LSDLPK----LLSNLSNLNNLDLSG-NKISDLPPEIELLSALEE  213 (394)
T ss_pred             hcccccccc-cchhhhhhhhhccccccccccCCch-hhhhhh----hhhhhhhhhheeccC-CccccCchhhhhhhhhhh
Confidence            455555555 3455554445555555555555533 555554    333455555555555 345555544333333555


Q ss_pred             EEEecC
Q 048450           83 LTIHRC   88 (133)
Q Consensus        83 L~i~~c   88 (133)
                      +.+.+.
T Consensus       214 l~~~~N  219 (394)
T COG4886         214 LDLSNN  219 (394)
T ss_pred             hhhcCC
Confidence            555444

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=96.82  E-value=0.0025  Score=51.81  Aligned_cols=73  Identities=23%  Similarity=0.348  Sum_probs=43.3

Q ss_pred             CccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCCccE
Q 048450            3 RLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTLQE   82 (133)
Q Consensus         3 ~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~   82 (133)
                      +|+.|+++++ .+..+|..+.  ++|+.|+++++ +++.+|.    .+  .++|+.|++++|. +..+|..+.  ++|+.
T Consensus       200 ~L~~L~Ls~N-~LtsLP~~l~--~nL~~L~Ls~N-~LtsLP~----~l--~~~L~~L~Ls~N~-L~~LP~~l~--s~L~~  266 (754)
T PRK15370        200 QITTLILDNN-ELKSLPENLQ--GNIKTLYANSN-QLTSIPA----TL--PDTIQEMELSINR-ITELPERLP--SALQS  266 (754)
T ss_pred             CCcEEEecCC-CCCcCChhhc--cCCCEEECCCC-ccccCCh----hh--hccccEEECcCCc-cCcCChhHh--CCCCE
Confidence            4556666653 5556664432  46677777664 3666665    33  2457777777643 556666543  36777


Q ss_pred             EEEecC
Q 048450           83 LTIHRC   88 (133)
Q Consensus        83 L~i~~c   88 (133)
                      |+++++
T Consensus       267 L~Ls~N  272 (754)
T PRK15370        267 LDLFHN  272 (754)
T ss_pred             EECcCC
Confidence            877754

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=96.76  E-value=0.00038  Score=52.11  Aligned_cols=81  Identities=20%  Similarity=0.260  Sum_probs=40.7

Q ss_pred             CCCccEEeecCCCCCccCC-ccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCcc-CcCCCCCC
Q 048450            1 MPRLSSLTVGSCNKLKALP-DYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVL-PDYLLQTT   78 (133)
Q Consensus         1 l~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~l-p~~~~~l~   78 (133)
                      +++|+.|+++++ ++..+- .++..+..++.|.+..+ +++.+..+   -+..++.|+.|++++. .++.+ |..+..+.
T Consensus       273 L~~L~~lnlsnN-~i~~i~~~aFe~~a~l~eL~L~~N-~l~~v~~~---~f~~ls~L~tL~L~~N-~it~~~~~aF~~~~  346 (498)
T KOG4237|consen  273 LPNLRKLNLSNN-KITRIEDGAFEGAAELQELYLTRN-KLEFVSSG---MFQGLSGLKTLSLYDN-QITTVAPGAFQTLF  346 (498)
T ss_pred             cccceEeccCCC-ccchhhhhhhcchhhhhhhhcCcc-hHHHHHHH---hhhccccceeeeecCC-eeEEEecccccccc
Confidence            345555555552 343333 33445555555555552 34444332   3445666666666663 33333 44455555


Q ss_pred             CccEEEEec
Q 048450           79 TLQELTIHR   87 (133)
Q Consensus        79 ~L~~L~i~~   87 (133)
                      +|..|.+-.
T Consensus       347 ~l~~l~l~~  355 (498)
T KOG4237|consen  347 SLSTLNLLS  355 (498)
T ss_pred             eeeeeehcc
Confidence            666666543

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=96.69  E-value=0.00017  Score=52.48  Aligned_cols=84  Identities=19%  Similarity=0.227  Sum_probs=44.6

Q ss_pred             CCccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCcccccc------------------ccccCCCCCCccEEeecC
Q 048450            2 PRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPIL------------------EDRRTTDIPRLTSLWISD   63 (133)
Q Consensus         2 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~------------------~~~~~~~l~~L~~L~l~~   63 (133)
                      |.++.|+++.+ .+..+. .+..+++|+.|+++++. +.++...                  ...+++.+-+|..|++++
T Consensus       307 Pkir~L~lS~N-~i~~v~-nLa~L~~L~~LDLS~N~-Ls~~~Gwh~KLGNIKtL~La~N~iE~LSGL~KLYSLvnLDl~~  383 (490)
T KOG1259|consen  307 PKLRRLILSQN-RIRTVQ-NLAELPQLQLLDLSGNL-LAECVGWHLKLGNIKTLKLAQNKIETLSGLRKLYSLVNLDLSS  383 (490)
T ss_pred             cceeEEecccc-ceeeeh-hhhhcccceEeecccch-hHhhhhhHhhhcCEeeeehhhhhHhhhhhhHhhhhheeccccc
Confidence            56777777773 444443 36677778888887743 3333220                  000234455556666655


Q ss_pred             CCCCCccC--cCCCCCCCccEEEEecCc
Q 048450           64 CPNLKVLP--DYLLQTTTLQELTIHRCP   89 (133)
Q Consensus        64 c~~l~~lp--~~~~~l~~L~~L~i~~c~   89 (133)
                       +++..+-  .++++++.|+.+.+.++|
T Consensus       384 -N~Ie~ldeV~~IG~LPCLE~l~L~~NP  410 (490)
T KOG1259|consen  384 -NQIEELDEVNHIGNLPCLETLRLTGNP  410 (490)
T ss_pred             -cchhhHHHhcccccccHHHHHhhcCCC
Confidence             2333332  245566666666666554

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=96.63  E-value=0.0011  Score=49.62  Aligned_cols=80  Identities=26%  Similarity=0.422  Sum_probs=60.8

Q ss_pred             CccEEeecCCCCCccCCccCCCCC-CccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCCcc
Q 048450            3 RLSSLTVGSCNKLKALPDYLLQTT-ALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTLQ   81 (133)
Q Consensus         3 ~L~~L~l~~~~~l~~lp~~~~~l~-~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~   81 (133)
                      .+..|++.+ ..+..+|+..+.+. +|+.|++.+ ..+..+|.    .++.++.|+.|++.++ .+..+|......+.|+
T Consensus       117 ~l~~L~l~~-n~i~~i~~~~~~~~~nL~~L~l~~-N~i~~l~~----~~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~L~  189 (394)
T COG4886         117 NLTSLDLDN-NNITDIPPLIGLLKSNLKELDLSD-NKIESLPS----PLRNLPNLKNLDLSFN-DLSDLPKLLSNLSNLN  189 (394)
T ss_pred             ceeEEecCC-cccccCccccccchhhcccccccc-cchhhhhh----hhhccccccccccCCc-hhhhhhhhhhhhhhhh
Confidence            466777776 46777887666764 899999988 45888876    6788999999999884 4778887655677888


Q ss_pred             EEEEecCc
Q 048450           82 ELTIHRCP   89 (133)
Q Consensus        82 ~L~i~~c~   89 (133)
                      .|+++++.
T Consensus       190 ~L~ls~N~  197 (394)
T COG4886         190 NLDLSGNK  197 (394)
T ss_pred             heeccCCc
Confidence            88888764

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=96.57  E-value=0.0049  Score=50.29  Aligned_cols=9  Identities=44%  Similarity=0.515  Sum_probs=4.3

Q ss_pred             CccEEeecC
Q 048450           55 RLTSLWISD   63 (133)
Q Consensus        55 ~L~~L~l~~   63 (133)
                      +|+.|++++
T Consensus       303 ~L~~LdLS~  311 (788)
T PRK15387        303 GLQELSVSD  311 (788)
T ss_pred             ccceeECCC
Confidence            444444444

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=96.56  E-value=0.00093  Score=50.12  Aligned_cols=92  Identities=9%  Similarity=0.175  Sum_probs=67.4

Q ss_pred             cCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcC-CCCCCCccEEEEecCchhHHhhcCCC
Q 048450           21 YLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDY-LLQTTTLQELTIHRCPLLENRYREGK   99 (133)
Q Consensus        21 ~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~l~~L~~L~i~~c~~l~~~~~~~~   99 (133)
                      -++.|++|+.|+++++ +++.+.++   ++.....+++|.+.. +++..+.++ +.++..|+.|+++++..-.     -.
T Consensus       269 cf~~L~~L~~lnlsnN-~i~~i~~~---aFe~~a~l~eL~L~~-N~l~~v~~~~f~~ls~L~tL~L~~N~it~-----~~  338 (498)
T KOG4237|consen  269 CFKKLPNLRKLNLSNN-KITRIEDG---AFEGAAELQELYLTR-NKLEFVSSGMFQGLSGLKTLSLYDNQITT-----VA  338 (498)
T ss_pred             HHhhcccceEeccCCC-ccchhhhh---hhcchhhhhhhhcCc-chHHHHHHHhhhccccceeeeecCCeeEE-----Ee
Confidence            4678999999999995 58877664   777889999999988 667777654 5688899999999876222     12


Q ss_pred             CCCCcccCCCCceEEcCccceee
Q 048450          100 GEDWHKISHIPHIKWSITRWCCR  122 (133)
Q Consensus       100 ~~~~~~i~~l~~l~~~~~~~~~~  122 (133)
                      +..|.....+..|.+..++|+++
T Consensus       339 ~~aF~~~~~l~~l~l~~Np~~Cn  361 (498)
T KOG4237|consen  339 PGAFQTLFSLSTLNLLSNPFNCN  361 (498)
T ss_pred             cccccccceeeeeehccCcccCc
Confidence            22345566666777777777654

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=96.45  E-value=0.0015  Score=52.63  Aligned_cols=84  Identities=20%  Similarity=0.168  Sum_probs=58.3

Q ss_pred             CCCccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCc--cC----cCC
Q 048450            1 MPRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKV--LP----DYL   74 (133)
Q Consensus         1 l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~--lp----~~~   74 (133)
                      ||+|..|+|+++ ++..+ .+++.|++|+.|.+.+.+ ++.-..  ...+.++++|+.|+|+.-.....  +.    +.-
T Consensus       172 FpNL~sLDIS~T-nI~nl-~GIS~LknLq~L~mrnLe-~e~~~~--l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~  246 (699)
T KOG3665|consen  172 FPNLRSLDISGT-NISNL-SGISRLKNLQVLSMRNLE-FESYQD--LIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECG  246 (699)
T ss_pred             cCccceeecCCC-CccCc-HHHhccccHHHHhccCCC-CCchhh--HHHHhcccCCCeeeccccccccchHHHHHHHHhc
Confidence            689999999995 77777 488999999999988765 332111  11466799999999987543322  11    111


Q ss_pred             CCCCCccEEEEecCc
Q 048450           75 LQTTTLQELTIHRCP   89 (133)
Q Consensus        75 ~~l~~L~~L~i~~c~   89 (133)
                      ..++.|+.||.++-.
T Consensus       247 ~~LpeLrfLDcSgTd  261 (699)
T KOG3665|consen  247 MVLPELRFLDCSGTD  261 (699)
T ss_pred             ccCccccEEecCCcc
Confidence            247889999988643

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.23  E-value=0.0023  Score=27.86  Aligned_cols=17  Identities=24%  Similarity=0.434  Sum_probs=8.2

Q ss_pred             ccEEeecCCCCCccCCcc
Q 048450            4 LSSLTVGSCNKLKALPDY   21 (133)
Q Consensus         4 L~~L~l~~~~~l~~lp~~   21 (133)
                      |++|++++| .++.+|.+
T Consensus         2 L~~Ldls~n-~l~~ip~~   18 (22)
T PF00560_consen    2 LEYLDLSGN-NLTSIPSS   18 (22)
T ss_dssp             ESEEEETSS-EESEEGTT
T ss_pred             ccEEECCCC-cCEeCChh
Confidence            455555554 44444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=96.23  E-value=0.0015  Score=47.67  Aligned_cols=77  Identities=16%  Similarity=0.280  Sum_probs=50.9

Q ss_pred             CccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCCccE
Q 048450            3 RLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTLQE   82 (133)
Q Consensus         3 ~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~   82 (133)
                      .|+++++++ +.+.++.+.+.-+|.++.|+++++. +..+.     .++.+++|+.|++++ +.+..+-.+-..+.+.+.
T Consensus       285 ~LtelDLS~-N~I~~iDESvKL~Pkir~L~lS~N~-i~~v~-----nLa~L~~L~~LDLS~-N~Ls~~~Gwh~KLGNIKt  356 (490)
T KOG1259|consen  285 ELTELDLSG-NLITQIDESVKLAPKLRRLILSQNR-IRTVQ-----NLAELPQLQLLDLSG-NLLAECVGWHLKLGNIKT  356 (490)
T ss_pred             hhhhccccc-cchhhhhhhhhhccceeEEeccccc-eeeeh-----hhhhcccceEeeccc-chhHhhhhhHhhhcCEee
Confidence            467788887 4677777777778888999888854 55553     477788899999887 445444333333444444


Q ss_pred             EEEec
Q 048450           83 LTIHR   87 (133)
Q Consensus        83 L~i~~   87 (133)
                      |.+.+
T Consensus       357 L~La~  361 (490)
T KOG1259|consen  357 LKLAQ  361 (490)
T ss_pred             eehhh
Confidence            44443

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.23  E-value=0.00035  Score=47.81  Aligned_cols=68  Identities=24%  Similarity=0.419  Sum_probs=46.2

Q ss_pred             CCCCCCccEEEeccCCCCccccccccccCC-CCCCccEEeecCCCCCCccC-cCCCCCCCccEEEEecCchhH
Q 048450           22 LLQTTALQELSICSCDLLEELPILEDRRTT-DIPRLTSLWISDCPNLKVLP-DYLLQTTTLQELTIHRCPLLE   92 (133)
Q Consensus        22 ~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~-~l~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~i~~c~~l~   92 (133)
                      +..+++++.|.+.+|..+....-+   .++ -.++|+.|+|++|+.+++-- ..+..+++|+.|.+.+.+.+.
T Consensus       121 L~~l~~i~~l~l~~ck~~dD~~L~---~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~v~  190 (221)
T KOG3864|consen  121 LRDLRSIKSLSLANCKYFDDWCLE---RLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPYVA  190 (221)
T ss_pred             HhccchhhhheeccccchhhHHHH---HhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchhhh
Confidence            456777888888888776544221   222 35788999999888887642 234567888888888876544

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=96.11  E-value=0.00024  Score=46.10  Aligned_cols=51  Identities=18%  Similarity=0.369  Sum_probs=22.3

Q ss_pred             EeecCCCCCccCCccC-CCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecC
Q 048450            7 LTVGSCNKLKALPDYL-LQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISD   63 (133)
Q Consensus         7 L~l~~~~~l~~lp~~~-~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~   63 (133)
                      .+|++ +.++.+|+.+ ..++.++.|++.++ .+..+|+    ++..++.|+.+.++.
T Consensus        58 i~ls~-N~fk~fp~kft~kf~t~t~lNl~~n-eisdvPe----E~Aam~aLr~lNl~~  109 (177)
T KOG4579|consen   58 ISLSD-NGFKKFPKKFTIKFPTATTLNLANN-EISDVPE----ELAAMPALRSLNLRF  109 (177)
T ss_pred             Eeccc-chhhhCCHHHhhccchhhhhhcchh-hhhhchH----HHhhhHHhhhccccc
Confidence            34444 2344444333 22334444444442 2444454    444455555555544

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.97  E-value=0.0055  Score=24.97  Aligned_cols=10  Identities=20%  Similarity=0.365  Sum_probs=4.8

Q ss_pred             CccEEeecCC
Q 048450            3 RLSSLTVGSC   12 (133)
Q Consensus         3 ~L~~L~l~~~   12 (133)
                      +|+.|++++|
T Consensus         2 ~L~~L~l~~n   11 (17)
T PF13504_consen    2 NLRTLDLSNN   11 (17)
T ss_dssp             T-SEEEETSS
T ss_pred             ccCEEECCCC
Confidence            4555555554

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=95.88  E-value=0.0052  Score=46.53  Aligned_cols=78  Identities=19%  Similarity=0.206  Sum_probs=42.0

Q ss_pred             CCccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCCcc
Q 048450            2 PRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTLQ   81 (133)
Q Consensus         2 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~   81 (133)
                      .+|..|++.+ ..++.+...+..+++|++|+++++ .++.+.     .+..++.|+.|++.+ +.+..+. ++..++.|+
T Consensus        95 ~~l~~l~l~~-n~i~~i~~~l~~~~~L~~L~ls~N-~I~~i~-----~l~~l~~L~~L~l~~-N~i~~~~-~~~~l~~L~  165 (414)
T KOG0531|consen   95 KSLEALDLYD-NKIEKIENLLSSLVNLQVLDLSFN-KITKLE-----GLSTLTLLKELNLSG-NLISDIS-GLESLKSLK  165 (414)
T ss_pred             cceeeeeccc-cchhhcccchhhhhcchheecccc-cccccc-----chhhccchhhheecc-Ccchhcc-CCccchhhh
Confidence            4555666665 345544432556667777777663 355554     355566666666665 3344443 223344555


Q ss_pred             EEEEecC
Q 048450           82 ELTIHRC   88 (133)
Q Consensus        82 ~L~i~~c   88 (133)
                      .+++.++
T Consensus       166 ~l~l~~n  172 (414)
T KOG0531|consen  166 LLDLSYN  172 (414)
T ss_pred             cccCCcc
Confidence            5555544

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.82  E-value=0.00079  Score=46.11  Aligned_cols=63  Identities=19%  Similarity=0.350  Sum_probs=45.7

Q ss_pred             CCccEEeecCCCCCccCC-ccC-CCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCC
Q 048450            2 PRLSSLTVGSCNKLKALP-DYL-LQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNL   67 (133)
Q Consensus         2 ~~L~~L~l~~~~~l~~lp-~~~-~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l   67 (133)
                      +.++.|.+.+|..+..+- +.+ +-.++|+.|+|++|+++++-.-.   .+..+++|+.|.+.+.+..
T Consensus       125 ~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~---~L~~lknLr~L~l~~l~~v  189 (221)
T KOG3864|consen  125 RSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLA---CLLKLKNLRRLHLYDLPYV  189 (221)
T ss_pred             chhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHH---HHHHhhhhHHHHhcCchhh
Confidence            456777888887776543 222 35689999999999998765432   6778899999988775543

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=95.22  E-value=0.0013  Score=42.74  Aligned_cols=80  Identities=24%  Similarity=0.378  Sum_probs=58.1

Q ss_pred             cEEeecCCCCCccCCcc---CCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCCcc
Q 048450            5 SSLTVGSCNKLKALPDY---LLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTLQ   81 (133)
Q Consensus         5 ~~L~l~~~~~l~~lp~~---~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~   81 (133)
                      ..+++++|+ +..+++.   +.....|...+++++ .++++|.+   ....++.++.+.+.. +.+..+|+.+..++.|+
T Consensus        30 h~ldLssc~-lm~i~davy~l~~~~el~~i~ls~N-~fk~fp~k---ft~kf~t~t~lNl~~-neisdvPeE~Aam~aLr  103 (177)
T KOG4579|consen   30 HFLDLSSCQ-LMYIADAVYMLSKGYELTKISLSDN-GFKKFPKK---FTIKFPTATTLNLAN-NEISDVPEELAAMPALR  103 (177)
T ss_pred             hhcccccch-hhHHHHHHHHHhCCceEEEEecccc-hhhhCCHH---Hhhccchhhhhhcch-hhhhhchHHHhhhHHhh
Confidence            346777773 3334432   334456777888884 58888882   333456889999987 67999999999999999


Q ss_pred             EEEEecCch
Q 048450           82 ELTIHRCPL   90 (133)
Q Consensus        82 ~L~i~~c~~   90 (133)
                      .++++.++.
T Consensus       104 ~lNl~~N~l  112 (177)
T KOG4579|consen  104 SLNLRFNPL  112 (177)
T ss_pred             hcccccCcc
Confidence            999998873

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=94.87  E-value=0.0074  Score=45.69  Aligned_cols=80  Identities=21%  Similarity=0.216  Sum_probs=58.7

Q ss_pred             CCCccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcC-CCCCCC
Q 048450            1 MPRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDY-LLQTTT   79 (133)
Q Consensus         1 l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~l~~   79 (133)
                      +++|++|++++ +.++.+. ++..++.|+.|++.++. +..+..     +..+++|+.+++.++. +..+... ...+.+
T Consensus       117 ~~~L~~L~ls~-N~I~~i~-~l~~l~~L~~L~l~~N~-i~~~~~-----~~~l~~L~~l~l~~n~-i~~ie~~~~~~~~~  187 (414)
T KOG0531|consen  117 LVNLQVLDLSF-NKITKLE-GLSTLTLLKELNLSGNL-ISDISG-----LESLKSLKLLDLSYNR-IVDIENDELSELIS  187 (414)
T ss_pred             hhcchheeccc-ccccccc-chhhccchhhheeccCc-chhccC-----CccchhhhcccCCcch-hhhhhhhhhhhccc
Confidence            46899999998 5777776 66778889999999965 777764     6668899999998844 5555442 345667


Q ss_pred             ccEEEEecCc
Q 048450           80 LQELTIHRCP   89 (133)
Q Consensus        80 L~~L~i~~c~   89 (133)
                      ++.+.+.++.
T Consensus       188 l~~l~l~~n~  197 (414)
T KOG0531|consen  188 LEELDLGGNS  197 (414)
T ss_pred             hHHHhccCCc
Confidence            7777776654

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=94.83  E-value=0.0071  Score=45.97  Aligned_cols=87  Identities=24%  Similarity=0.304  Sum_probs=44.4

Q ss_pred             CCCccEEeecCCCCCccCCc--cCCCCCCccEEEeccCCCC--------ccccccc------c-------ccCCCCCCcc
Q 048450            1 MPRLSSLTVGSCNKLKALPD--YLLQTTALQELSICSCDLL--------EELPILE------D-------RRTTDIPRLT   57 (133)
Q Consensus         1 l~~L~~L~l~~~~~l~~lp~--~~~~l~~L~~L~l~~c~~l--------~~lp~~~------~-------~~~~~l~~L~   57 (133)
                      ||+|+.|+++.+ .+.....  .-..++.|+.|.++.|..-        ..+|.-+      .       .....+..|+
T Consensus       171 Lp~Le~LNls~N-rl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~  249 (505)
T KOG3207|consen  171 LPSLENLNLSSN-RLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQ  249 (505)
T ss_pred             cccchhcccccc-cccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHh
Confidence            577788888774 3432221  1134566777777666311        0011100      0       0111245677


Q ss_pred             EEeecCCCCCCccC--cCCCCCCCccEEEEecCc
Q 048450           58 SLWISDCPNLKVLP--DYLLQTTTLQELTIHRCP   89 (133)
Q Consensus        58 ~L~l~~c~~l~~lp--~~~~~l~~L~~L~i~~c~   89 (133)
                      +|++++.+ +..++  ...+.++.|..|.++.|.
T Consensus       250 ~LdLs~N~-li~~~~~~~~~~l~~L~~Lnls~tg  282 (505)
T KOG3207|consen  250 ELDLSNNN-LIDFDQGYKVGTLPGLNQLNLSSTG  282 (505)
T ss_pred             hccccCCc-ccccccccccccccchhhhhccccC
Confidence            77777744 44555  234566777777776654

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=94.82  E-value=0.014  Score=44.35  Aligned_cols=61  Identities=23%  Similarity=0.298  Sum_probs=28.7

Q ss_pred             CCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCcc--CcC-----CCCCCCccEEEEecCc
Q 048450           25 TTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVL--PDY-----LLQTTTLQELTIHRCP   89 (133)
Q Consensus        25 l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~l--p~~-----~~~l~~L~~L~i~~c~   89 (133)
                      +..|+.|++++++ +..++..  -..+.++.|..|.+..|. +.++  |..     ...+++|+.|++..++
T Consensus       245 ~~~L~~LdLs~N~-li~~~~~--~~~~~l~~L~~Lnls~tg-i~si~~~d~~s~~kt~~f~kL~~L~i~~N~  312 (505)
T KOG3207|consen  245 LQTLQELDLSNNN-LIDFDQG--YKVGTLPGLNQLNLSSTG-IASIAEPDVESLDKTHTFPKLEYLNISENN  312 (505)
T ss_pred             hhHHhhccccCCc-ccccccc--cccccccchhhhhccccC-cchhcCCCccchhhhcccccceeeecccCc
Confidence            3455666666543 3333310  034556666666665543 2222  211     1234566666666544

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=94.69  E-value=0.021  Score=40.52  Aligned_cols=62  Identities=21%  Similarity=0.312  Sum_probs=33.0

Q ss_pred             CCCCCccEEEeccCC--CCccccccccccCCCCCCccEEeecCCCCCCccC--cCCCCCCCccEEEEecCc
Q 048450           23 LQTTALQELSICSCD--LLEELPILEDRRTTDIPRLTSLWISDCPNLKVLP--DYLLQTTTLQELTIHRCP   89 (133)
Q Consensus        23 ~~l~~L~~L~l~~c~--~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp--~~~~~l~~L~~L~i~~c~   89 (133)
                      ..|++|+.|.++.+.  -...++.    -....++|+++.+++ +.++.+-  ..+..+.+|..|++.+|+
T Consensus        62 P~Lp~LkkL~lsdn~~~~~~~l~v----l~e~~P~l~~l~ls~-Nki~~lstl~pl~~l~nL~~Ldl~n~~  127 (260)
T KOG2739|consen   62 PKLPKLKKLELSDNYRRVSGGLEV----LAEKAPNLKVLNLSG-NKIKDLSTLRPLKELENLKSLDLFNCS  127 (260)
T ss_pred             CCcchhhhhcccCCccccccccee----hhhhCCceeEEeecC-CccccccccchhhhhcchhhhhcccCC
Confidence            356777777776652  1222322    222347777777776 3344321  112345566677777765

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=94.63  E-value=0.019  Score=41.98  Aligned_cols=82  Identities=18%  Similarity=0.287  Sum_probs=53.9

Q ss_pred             CCccEEeecCCCCCc---cCCccCCCCCCccEEEeccCCCCcc-ccccccccCCCCCCccEEeecCCCCCCccCcC---C
Q 048450            2 PRLSSLTVGSCNKLK---ALPDYLLQTTALQELSICSCDLLEE-LPILEDRRTTDIPRLTSLWISDCPNLKVLPDY---L   74 (133)
Q Consensus         2 ~~L~~L~l~~~~~l~---~lp~~~~~l~~L~~L~l~~c~~l~~-lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~---~   74 (133)
                      ++|..|+|++|..--   ++..-....++|..|++++|..++. .-.    .+..++.|++|.++.|..+  +|+.   +
T Consensus       286 e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~----~~~kf~~L~~lSlsRCY~i--~p~~~~~l  359 (419)
T KOG2120|consen  286 ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQ----EFFKFNYLQHLSLSRCYDI--IPETLLEL  359 (419)
T ss_pred             hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHH----HHHhcchheeeehhhhcCC--ChHHeeee
Confidence            357778888765432   1222234678889999998876643 112    3556888999999988754  2332   3


Q ss_pred             CCCCCccEEEEecCc
Q 048450           75 LQTTTLQELTIHRCP   89 (133)
Q Consensus        75 ~~l~~L~~L~i~~c~   89 (133)
                      ...++|.+|++.+|-
T Consensus       360 ~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  360 NSKPSLVYLDVFGCV  374 (419)
T ss_pred             ccCcceEEEEecccc
Confidence            466789999998874

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=94.43  E-value=0.13  Score=35.67  Aligned_cols=13  Identities=15%  Similarity=0.414  Sum_probs=6.9

Q ss_pred             CCCCccEEEEecC
Q 048450           76 QTTTLQELTIHRC   88 (133)
Q Consensus        76 ~l~~L~~L~i~~c   88 (133)
                      .+++|+.|++..-
T Consensus       138 klp~l~~LDF~kV  150 (233)
T KOG1644|consen  138 KLPSLRTLDFQKV  150 (233)
T ss_pred             ecCcceEeehhhh
Confidence            3455555555543

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=94.37  E-value=0.0029  Score=51.06  Aligned_cols=77  Identities=22%  Similarity=0.288  Sum_probs=41.7

Q ss_pred             CCccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCCcc
Q 048450            2 PRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTLQ   81 (133)
Q Consensus         2 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~   81 (133)
                      +.|+.|+++.+ ++.... .+..++.|+.|+|+++ .+..+|.-   +.... .|+.|.+++ +.++.+- ++.++.+|+
T Consensus       187 ~ale~LnLshN-k~~~v~-~Lr~l~~LkhLDlsyN-~L~~vp~l---~~~gc-~L~~L~lrn-N~l~tL~-gie~LksL~  257 (1096)
T KOG1859|consen  187 PALESLNLSHN-KFTKVD-NLRRLPKLKHLDLSYN-CLRHVPQL---SMVGC-KLQLLNLRN-NALTTLR-GIENLKSLY  257 (1096)
T ss_pred             HHhhhhccchh-hhhhhH-HHHhcccccccccccc-hhcccccc---chhhh-hheeeeecc-cHHHhhh-hHHhhhhhh
Confidence            45666777763 444333 4556677777777763 46555541   11111 266666655 3455443 345566666


Q ss_pred             EEEEec
Q 048450           82 ELTIHR   87 (133)
Q Consensus        82 ~L~i~~   87 (133)
                      .|++++
T Consensus       258 ~LDlsy  263 (1096)
T KOG1859|consen  258 GLDLSY  263 (1096)
T ss_pred             ccchhH
Confidence            666654

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=94.25  E-value=0.099  Score=36.17  Aligned_cols=78  Identities=19%  Similarity=0.304  Sum_probs=51.7

Q ss_pred             ccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCC-CCCccEEeecCCCCCCccC--cCCCCCCCc
Q 048450            4 LSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTD-IPRLTSLWISDCPNLKVLP--DYLLQTTTL   80 (133)
Q Consensus         4 L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~-l~~L~~L~l~~c~~l~~lp--~~~~~l~~L   80 (133)
                      ...++++++ .+..++ .+..++.|..|.+.++ .+..+..    .+.. +++|+.|.+.+ +.+..+-  ..+..++.|
T Consensus        44 ~d~iDLtdN-dl~~l~-~lp~l~rL~tLll~nN-rIt~I~p----~L~~~~p~l~~L~Ltn-Nsi~~l~dl~pLa~~p~L  115 (233)
T KOG1644|consen   44 FDAIDLTDN-DLRKLD-NLPHLPRLHTLLLNNN-RITRIDP----DLDTFLPNLKTLILTN-NSIQELGDLDPLASCPKL  115 (233)
T ss_pred             cceeccccc-chhhcc-cCCCccccceEEecCC-cceeecc----chhhhccccceEEecC-cchhhhhhcchhccCCcc
Confidence            445667763 444444 4557888999999884 5878766    4544 56799998887 4454442  124456788


Q ss_pred             cEEEEecCc
Q 048450           81 QELTIHRCP   89 (133)
Q Consensus        81 ~~L~i~~c~   89 (133)
                      +.|.+-+++
T Consensus       116 ~~Ltll~Np  124 (233)
T KOG1644|consen  116 EYLTLLGNP  124 (233)
T ss_pred             ceeeecCCc
Confidence            888887766

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=93.22  E-value=0.0095  Score=43.53  Aligned_cols=35  Identities=23%  Similarity=0.359  Sum_probs=21.7

Q ss_pred             CccEEeecCCCCCccCC--ccCCCCCCccEEEeccCC
Q 048450            3 RLSSLTVGSCNKLKALP--DYLLQTTALQELSICSCD   37 (133)
Q Consensus         3 ~L~~L~l~~~~~l~~lp--~~~~~l~~L~~L~l~~c~   37 (133)
                      +|+.|+|+.|..+.+..  --+.+++.|..|+++.|.
T Consensus       235 ~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~  271 (419)
T KOG2120|consen  235 NLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCF  271 (419)
T ss_pred             cceeeccccccccchhHHHHHHHhhhhHhhcCchHhh
Confidence            56677777776666543  123556677777777664

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.24  E-value=0.0056  Score=44.26  Aligned_cols=16  Identities=31%  Similarity=0.968  Sum_probs=8.4

Q ss_pred             CCCCCCccEEeecCCC
Q 048450           50 TTDIPRLTSLWISDCP   65 (133)
Q Consensus        50 ~~~l~~L~~L~l~~c~   65 (133)
                      +.++++|+.|++..+|
T Consensus        84 LknlpsLr~LWL~ENP   99 (388)
T KOG2123|consen   84 LKNLPSLRTLWLDENP   99 (388)
T ss_pred             HhcCchhhhHhhccCC
Confidence            4455555555555444

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=91.49  E-value=0.14  Score=36.42  Aligned_cols=83  Identities=20%  Similarity=0.276  Sum_probs=51.3

Q ss_pred             CCCccEEeecCC--CCCccCCccCCCCCCccEEEeccCCC--CccccccccccCCCCCCccEEeecCCCCCCccCc----
Q 048450            1 MPRLSSLTVGSC--NKLKALPDYLLQTTALQELSICSCDL--LEELPILEDRRTTDIPRLTSLWISDCPNLKVLPD----   72 (133)
Q Consensus         1 l~~L~~L~l~~~--~~l~~lp~~~~~l~~L~~L~l~~c~~--l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~----   72 (133)
                      ||+|+.|.++.+  .-...++.-+...|+|++++++++..  +..++     .+..+.+|..|++.+|.... +-.    
T Consensus        64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~-----pl~~l~nL~~Ldl~n~~~~~-l~dyre~  137 (260)
T KOG2739|consen   64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR-----PLKELENLKSLDLFNCSVTN-LDDYREK  137 (260)
T ss_pred             cchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc-----hhhhhcchhhhhcccCCccc-cccHHHH
Confidence            578888888876  33334554455679999999998541  23333     35567778888888876443 210    


Q ss_pred             CCCCCCCccEEEEecCc
Q 048450           73 YLLQTTTLQELTIHRCP   89 (133)
Q Consensus        73 ~~~~l~~L~~L~i~~c~   89 (133)
                      .+.-+++|..|+-.+..
T Consensus       138 vf~ll~~L~~LD~~dv~  154 (260)
T KOG2739|consen  138 VFLLLPSLKYLDGCDVD  154 (260)
T ss_pred             HHHHhhhhccccccccC
Confidence            12235667777665543

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=90.42  E-value=0.055  Score=41.11  Aligned_cols=11  Identities=27%  Similarity=0.673  Sum_probs=4.7

Q ss_pred             CccEEeecCCC
Q 048450            3 RLSSLTVGSCN   13 (133)
Q Consensus         3 ~L~~L~l~~~~   13 (133)
                      +|+.|.++.|.
T Consensus       321 ~L~~l~l~~c~  331 (483)
T KOG4341|consen  321 NLQVLELSGCQ  331 (483)
T ss_pred             ceEEEeccccc
Confidence            34444444443

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=89.97  E-value=0.1  Score=39.59  Aligned_cols=39  Identities=33%  Similarity=0.533  Sum_probs=21.6

Q ss_pred             CCCccEEeecCCCCCCc--cCcCCCCCCCccEEEEecCchh
Q 048450           53 IPRLTSLWISDCPNLKV--LPDYLLQTTTLQELTIHRCPLL   91 (133)
Q Consensus        53 l~~L~~L~l~~c~~l~~--lp~~~~~l~~L~~L~i~~c~~l   91 (133)
                      .++|+.|.+.+|..++.  +-......++|++|++++|..+
T Consensus       268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~  308 (482)
T KOG1947|consen  268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL  308 (482)
T ss_pred             CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence            45677776666664322  1112234556777777776654

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=89.87  E-value=0.24  Score=21.99  Aligned_cols=17  Identities=35%  Similarity=0.696  Sum_probs=8.1

Q ss_pred             CCccEEeecCCCCCccCC
Q 048450            2 PRLSSLTVGSCNKLKALP   19 (133)
Q Consensus         2 ~~L~~L~l~~~~~l~~lp   19 (133)
                      ++|++|+++++ .+..+|
T Consensus         2 ~~L~~L~L~~N-~l~~lp   18 (26)
T smart00369        2 PNLRELDLSNN-QLSSLP   18 (26)
T ss_pred             CCCCEEECCCC-cCCcCC
Confidence            44555555542 444444

>smart00370 LRR Leucine-rich repeats, outliers

Probab=89.87  E-value=0.24  Score=21.99  Aligned_cols=17  Identities=35%  Similarity=0.696  Sum_probs=8.1

Q ss_pred             CCccEEeecCCCCCccCC
Q 048450            2 PRLSSLTVGSCNKLKALP   19 (133)
Q Consensus         2 ~~L~~L~l~~~~~l~~lp   19 (133)
                      ++|++|+++++ .+..+|
T Consensus         2 ~~L~~L~L~~N-~l~~lp   18 (26)
T smart00370        2 PNLRELDLSNN-QLSSLP   18 (26)
T ss_pred             CCCCEEECCCC-cCCcCC
Confidence            44555555542 444444

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=89.86  E-value=3.1  Score=25.52  Aligned_cols=77  Identities=21%  Similarity=0.279  Sum_probs=41.7

Q ss_pred             CCccEEeecCCCCCccCCc-cCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcC-CCCCCC
Q 048450            2 PRLSSLTVGSCNKLKALPD-YLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDY-LLQTTT   79 (133)
Q Consensus         2 ~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~l~~   79 (133)
                      ++|+.+.+.+  .+..++. .+...++|+.+.+..  .+..++..   .+...++++.+.+..  .+..++.. +...+.
T Consensus        12 ~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~--~~~~i~~~---~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~   82 (129)
T PF13306_consen   12 SNLESITFPN--TIKKIGENAFSNCTSLKSINFPN--NLTSIGDN---AFSNCKSLESITFPN--NLKSIGDNAFSNCTN   82 (129)
T ss_dssp             TT--EEEETS--T--EE-TTTTTT-TT-SEEEESS--TTSCE-TT---TTTT-TT-EEEEETS--TT-EE-TTTTTT-TT
T ss_pred             CCCCEEEECC--CeeEeChhhcccccccccccccc--ccccccee---eeecccccccccccc--ccccccccccccccc
Confidence            3567777763  4556653 345666888888865  37677664   566676888888854  45556544 345778


Q ss_pred             ccEEEEec
Q 048450           80 LQELTIHR   87 (133)
Q Consensus        80 L~~L~i~~   87 (133)
                      ++.+.+..
T Consensus        83 l~~i~~~~   90 (129)
T PF13306_consen   83 LKNIDIPS   90 (129)
T ss_dssp             ECEEEETT
T ss_pred             ccccccCc
Confidence            88888753

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=89.12  E-value=0.29  Score=21.86  Aligned_cols=13  Identities=31%  Similarity=0.715  Sum_probs=6.2

Q ss_pred             CccEEEeccCCCC
Q 048450           27 ALQELSICSCDLL   39 (133)
Q Consensus        27 ~L~~L~l~~c~~l   39 (133)
                      +|+.|++++|+++
T Consensus         3 ~L~~L~l~~C~~i   15 (26)
T smart00367        3 NLRELDLSGCTNI   15 (26)
T ss_pred             CCCEeCCCCCCCc
Confidence            4444555554444

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.84  E-value=0.0094  Score=43.16  Aligned_cols=77  Identities=21%  Similarity=0.348  Sum_probs=51.5

Q ss_pred             ccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCc--CCCCCCCcc
Q 048450            4 LSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPD--YLLQTTTLQ   81 (133)
Q Consensus         4 L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~--~~~~l~~L~   81 (133)
                      .+.|+.-+| .+.++. -...++.|+.|.++-+ ++.++.     .+...+.|++|.++. +.+.++-+  .+.++++|+
T Consensus        21 vkKLNcwg~-~L~DIs-ic~kMp~lEVLsLSvN-kIssL~-----pl~rCtrLkElYLRk-N~I~sldEL~YLknlpsLr   91 (388)
T KOG2123|consen   21 VKKLNCWGC-GLDDIS-ICEKMPLLEVLSLSVN-KISSLA-----PLQRCTRLKELYLRK-NCIESLDELEYLKNLPSLR   91 (388)
T ss_pred             hhhhcccCC-CccHHH-HHHhcccceeEEeecc-ccccch-----hHHHHHHHHHHHHHh-cccccHHHHHHHhcCchhh
Confidence            345555555 344443 2357888999988763 476664     366788899988876 44555432  356888999


Q ss_pred             EEEEecCc
Q 048450           82 ELTIHRCP   89 (133)
Q Consensus        82 ~L~i~~c~   89 (133)
                      .|.+..+|
T Consensus        92 ~LWL~ENP   99 (388)
T KOG2123|consen   92 TLWLDENP   99 (388)
T ss_pred             hHhhccCC
Confidence            99888776

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=85.72  E-value=5.7  Score=24.31  Aligned_cols=76  Identities=16%  Similarity=0.237  Sum_probs=43.1

Q ss_pred             CCccEEeecCCCCCccCCc-cCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcC-CCCCCC
Q 048450            2 PRLSSLTVGSCNKLKALPD-YLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDY-LLQTTT   79 (133)
Q Consensus         2 ~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~l~~   79 (133)
                      ++|+.+.+.+  .+..++. .+.+.++++.+.+.+  .+..++..   .+...++|+.+.+..  .+..++.. +.+. .
T Consensus        35 ~~l~~i~~~~--~~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~---~F~~~~~l~~i~~~~--~~~~i~~~~f~~~-~  104 (129)
T PF13306_consen   35 TSLKSINFPN--NLTSIGDNAFSNCKSLESITFPN--NLKSIGDN---AFSNCTNLKNIDIPS--NITEIGSSSFSNC-N  104 (129)
T ss_dssp             TT-SEEEESS--TTSCE-TTTTTT-TT-EEEEETS--TT-EE-TT---TTTT-TTECEEEETT--T-BEEHTTTTTT--T
T ss_pred             cccccccccc--cccccceeeeecccccccccccc--cccccccc---cccccccccccccCc--cccEEchhhhcCC-C
Confidence            3677888765  3666664 346666899999965  46666663   566689999999864  36666654 3444 7


Q ss_pred             ccEEEEec
Q 048450           80 LQELTIHR   87 (133)
Q Consensus        80 L~~L~i~~   87 (133)
                      ++.+.+.+
T Consensus       105 l~~i~~~~  112 (129)
T PF13306_consen  105 LKEINIPS  112 (129)
T ss_dssp             --EEE-TT
T ss_pred             ceEEEECC
Confidence            77777653

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=83.97  E-value=0.099  Score=42.70  Aligned_cols=69  Identities=20%  Similarity=0.302  Sum_probs=49.0

Q ss_pred             CCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCCccEEEEecCc
Q 048450           14 KLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTLQELTIHRCP   89 (133)
Q Consensus        14 ~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~i~~c~   89 (133)
                      .+..+...+.-++.|+.|+++.++ +....     .+..++.|++|+|++ +.++.+|..-.--..|+.|.++++-
T Consensus       175 ~L~~mD~SLqll~ale~LnLshNk-~~~v~-----~Lr~l~~LkhLDlsy-N~L~~vp~l~~~gc~L~~L~lrnN~  243 (1096)
T KOG1859|consen  175 RLVLMDESLQLLPALESLNLSHNK-FTKVD-----NLRRLPKLKHLDLSY-NCLRHVPQLSMVGCKLQLLNLRNNA  243 (1096)
T ss_pred             hHHhHHHHHHHHHHhhhhccchhh-hhhhH-----HHHhccccccccccc-chhccccccchhhhhheeeeecccH
Confidence            444444556668889999999854 66554     477789999999987 6688888532222368999998764

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=83.19  E-value=0.082  Score=40.06  Aligned_cols=91  Identities=26%  Similarity=0.422  Sum_probs=51.3

Q ss_pred             CCccEEeecCCCCCcc--CCccCCCCCCccEEEeccC-CCCccccccccccCCCCCCccEEeecCCCCCCccC-cCC-CC
Q 048450            2 PRLSSLTVGSCNKLKA--LPDYLLQTTALQELSICSC-DLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLP-DYL-LQ   76 (133)
Q Consensus         2 ~~L~~L~l~~~~~l~~--lp~~~~~l~~L~~L~l~~c-~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp-~~~-~~   76 (133)
                      +.|+.|.+.+|..+..  +-......+.|+.|++.+| ......+...........+|+.|++..|..+...- ..+ ..
T Consensus       188 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~  267 (482)
T KOG1947|consen  188 PLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASR  267 (482)
T ss_pred             chhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhh
Confidence            5667777777766665  3234456778888888763 22222111000022235678888888877544321 111 23


Q ss_pred             CCCccEEEEecCchhH
Q 048450           77 TTTLQELTIHRCPLLE   92 (133)
Q Consensus        77 l~~L~~L~i~~c~~l~   92 (133)
                      .++|+.|.+.+|..+.
T Consensus       268 c~~L~~L~l~~c~~lt  283 (482)
T KOG1947|consen  268 CPNLETLSLSNCSNLT  283 (482)
T ss_pred             CCCcceEccCCCCccc
Confidence            5688888888787543

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=83.17  E-value=0.4  Score=36.67  Aligned_cols=92  Identities=18%  Similarity=0.357  Sum_probs=54.9

Q ss_pred             CCccEEeecCCCCCccC--CccCCCCCCccEEEeccCCCCccccccc-cccCCCCCCccEEeecCCCCCCcc-CcCCCCC
Q 048450            2 PRLSSLTVGSCNKLKAL--PDYLLQTTALQELSICSCDLLEELPILE-DRRTTDIPRLTSLWISDCPNLKVL-PDYLLQT   77 (133)
Q Consensus         2 ~~L~~L~l~~~~~l~~l--p~~~~~l~~L~~L~l~~c~~l~~lp~~~-~~~~~~l~~L~~L~l~~c~~l~~l-p~~~~~l   77 (133)
                      +.|+.+++..|.....-  -.-..+.+.|+.|.++.|..+....... ...-..+..|..+.+++|+.+..- -+.+...
T Consensus       346 ~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c  425 (483)
T KOG4341|consen  346 PHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSIC  425 (483)
T ss_pred             hhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhC
Confidence            35666666665443321  1122466788888888876554321000 002234677889999999876542 2334455


Q ss_pred             CCccEEEEecCchhHH
Q 048450           78 TTLQELTIHRCPLLEN   93 (133)
Q Consensus        78 ~~L~~L~i~~c~~l~~   93 (133)
                      ++|+.+++.+|..+.+
T Consensus       426 ~~Leri~l~~~q~vtk  441 (483)
T KOG4341|consen  426 RNLERIELIDCQDVTK  441 (483)
T ss_pred             cccceeeeechhhhhh
Confidence            6889999999987664

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=80.63  E-value=0.68  Score=34.58  Aligned_cols=41  Identities=24%  Similarity=0.256  Sum_probs=21.4

Q ss_pred             cCCCCCCccEEeecCCCCCC----ccCcCCCCCCCccEEEEecCc
Q 048450           49 RTTDIPRLTSLWISDCPNLK----VLPDYLLQTTTLQELTIHRCP   89 (133)
Q Consensus        49 ~~~~l~~L~~L~l~~c~~l~----~lp~~~~~l~~L~~L~i~~c~   89 (133)
                      .+.+.++|+.|++.++..-.    .+-..+..+++|+.+++.+|-
T Consensus       208 al~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcl  252 (382)
T KOG1909|consen  208 ALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCL  252 (382)
T ss_pred             HHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccc
Confidence            34456677777776633211    122223345566777777664

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	133
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-06
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-05
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	9e-05
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-04
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-04

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 50.3 bits (121), Expect = 2e-08
 Identities = 25/92 (27%), Positives = 37/92 (40%), Gaps = 5/92 (5%)

Query: 1   MPRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLW 60
           +  L SL +   + L AL   +     L+EL +  C  L   P            L  L 
Sbjct: 205 LQNLKSLKI-RNSPLSALGPAIHHLPKLEELDLRGCTALRNYP----PIFGGRAPLKRLI 259

Query: 61  ISDCPNLKVLPDYLLQTTTLQELTIHRCPLLE 92
           + DC NL  LP  + + T L++L +  C  L 
Sbjct: 260 LKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLS 291

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 48.8 bits (117), Expect = 6e-08
 Identities = 20/92 (21%), Positives = 33/92 (35%), Gaps = 4/92 (4%)

Query: 1   MPRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLW 60
           +P+L  L +  C  L+  P        L+ L +  C  L  LP         + +L  L 
Sbjct: 228 LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLP----LDIHRLTQLEKLD 283

Query: 61  ISDCPNLKVLPDYLLQTTTLQELTIHRCPLLE 92
           +  C NL  LP  + Q      + +      +
Sbjct: 284 LRGCVNLSRLPSLIAQLPANCIILVPPHLQAQ 315

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 44.2 bits (105), Expect = 2e-06
 Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 6/85 (7%)

Query: 11  SCNKLKALPDYLLQTTALQELSICSCDLLEELP-----ILEDRRTTDIPRLTSLWISDCP 65
           + N L+ALP  +     L+ELSI +C  L ELP              +  L SL +    
Sbjct: 135 ARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT- 193

Query: 66  NLKVLPDYLLQTTTLQELTIHRCPL 90
            ++ LP  +     L+ L I   PL
Sbjct: 194 GIRSLPASIANLQNLKSLKIRNSPL 218

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 41.1 bits (97), Expect = 3e-05
 Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 7/92 (7%)

Query: 1   MPRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLW 60
            P   +L +     L   PD   + + LQ ++I +   L ELP            L +L 
Sbjct: 80  QPGRVALEL-RSVPLPQFPDQAFRLSHLQHMTIDAAG-LMELP----DTMQQFAGLETLT 133

Query: 61  ISDCPNLKVLPDYLLQTTTLQELTIHRCPLLE 92
           ++    L+ LP  +     L+EL+I  CP L 
Sbjct: 134 LARN-PLRALPASIASLNRLRELSIRACPELT 164

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 39.5 bits (93), Expect = 9e-05
 Identities = 22/76 (28%), Positives = 27/76 (35%), Gaps = 11/76 (14%)

Query: 11  SCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSL---WISDCPNL 67
               L  LPD + Q   L+ L++     L  LP         I  L  L    I  CP L
Sbjct: 112 DAAGLMELPDTMQQFAGLETLTLARNP-LRALP-------ASIASLNRLRELSIRACPEL 163

Query: 68  KVLPDYLLQTTTLQEL 83
             LP+ L  T    E 
Sbjct: 164 TELPEPLASTDASGEH 179

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 39.5 bits (93), Expect = 1e-04
 Identities = 12/89 (13%), Positives = 16/89 (17%), Gaps = 11/89 (12%)

Query: 4  LSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISD 63
            +L       L+   D L Q                                  +    
Sbjct: 14 RENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSN---------NPQIETRT 64

Query: 64 CPNLKVLPDYL--LQTTTLQELTIHRCPL 90
             LK   D L          L +   PL
Sbjct: 65 GRALKATADLLEDATQPGRVALELRSVPL 93

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 39.2 bits (92), Expect = 1e-04
 Identities = 18/79 (22%), Positives = 29/79 (36%), Gaps = 9/79 (11%)

Query: 1   MPRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLW 60
              L  L +  C+ L  LP  + + T L++L +  C  L  LP       + I +L +  
Sbjct: 252 RAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP-------SLIAQLPANC 304

Query: 61  ISDCPN--LKVLPDYLLQT 77
           I   P      L  +    
Sbjct: 305 IILVPPHLQAQLDQHRPVA 323

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.1 bits (90), Expect = 2e-04
 Identities = 30/157 (19%), Positives = 47/157 (29%), Gaps = 51/157 (32%)

Query: 2   PRLSSLTVGSCNKLKALPDYLLQT-----TALQELSICSCD------LLEELPILEDRRT 50
           PR  S+   S     A  D          T + E S+   +      + + L +     +
Sbjct: 327 PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPP--S 384

Query: 51  TDIP--RLTSLW---ISDCPNLKV-------------------LPD-YL-LQTTTLQELT 84
             IP   L+ +W   I     + V                   +P  YL L+     E  
Sbjct: 385 AHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYA 444

Query: 85  IHRCPLLENRYREGKGEDWHKI----------SHIPH 111
           +HR   + + Y   K  D   +          SHI H
Sbjct: 445 LHR--SIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH 479

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 38.7 bits (90), Expect = 2e-04
 Identities = 19/99 (19%), Positives = 35/99 (35%), Gaps = 16/99 (16%)

Query: 1   MPRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPR----- 55
           +P LS++ V S N   + P   L ++ L+        +  +     +R     P      
Sbjct: 752 LPYLSNMDV-SYNCFSSFPTQPLNSSQLKAF-----GIRHQRDAEGNRILRQWPTGITTC 805

Query: 56  --LTSLWISDCPNLKVLPDYLLQTTTLQELTIHRCPLLE 92
             L  L I    +++ + + L     L  L I   P + 
Sbjct: 806 PSLIQLQIGSN-DIRKVDEKLT--PQLYILDIADNPNIS 841

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 37.4 bits (87), Expect = 7e-04
 Identities = 25/93 (26%), Positives = 33/93 (35%), Gaps = 10/93 (10%)

Query: 1   MPRLSSLTVGSCNKLKALPDYLLQ-TTALQELSICSCDLLEELPI--LEDRRTTDIPRLT 57
           +  L  LT+     L ++P   L     L  L       L  L I  + D     + RL 
Sbjct: 151 LNSLEQLTLEK-CNLTSIPTEALSHLHGLIVLR------LRHLNINAIRDYSFKRLYRLK 203

Query: 58  SLWISDCPNLKVLPDYLLQTTTLQELTIHRCPL 90
            L IS  P L  +    L    L  L+I  C L
Sbjct: 204 VLEISHWPYLDTMTPNCLYGLNLTSLSITHCNL 236

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	133
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.37
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.35
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.18
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.16
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.15
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.03
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.03
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.01
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.01
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.01
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.01
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.01
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.99
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.98
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	98.98
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	98.98
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	98.97
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	98.95
3m19_A	251	Variable lymphocyte receptor A diversity region; a	98.94
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	98.94
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	98.94
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.94
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.94
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	98.94
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	98.93
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	98.92
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.92
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	98.92
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	98.92
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.92
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	98.92
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.91
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	98.91
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	98.9
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	98.89
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	98.89
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.89
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	98.88
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	98.88
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.88
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	98.88
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	98.88
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	98.88
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	98.87
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	98.86
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	98.86
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	98.86
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	98.86
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	98.85
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	98.85
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	98.85
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.84
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.84
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	98.84
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.83
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.83
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	98.82
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	98.82
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.82
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	98.81
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	98.81
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.81
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.8
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.79
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	98.79
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	98.79
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	98.79
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.78
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	98.77
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.77
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	98.77
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.76
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	98.75
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	98.75
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.74
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	98.74
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	98.74
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	98.73
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	98.73
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	98.71
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.7
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.7
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	98.7
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	98.69
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.69
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.68
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.68
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	98.67
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	98.67
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.67
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	98.66
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.65
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.65
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	98.64
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.62
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.61
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	98.61
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.6
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	98.6
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.6
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.6
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.59
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.59
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.58
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.58
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.56
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.56
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	98.54
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.54
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.53
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.51
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.45
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.45
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.44
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	98.44
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.35
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.24
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	98.22
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.21
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.17
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.15
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.12
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.1
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	98.07
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.03
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	97.97
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	97.87
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	97.84
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	97.83
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.68
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	97.6
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	97.6
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	97.5
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	97.48
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	97.37
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	97.35
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	97.19
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	97.18
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	96.9
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	96.89
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	96.75
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	96.47
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	96.35
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	96.17
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	95.98
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	95.97
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	95.11
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	94.65
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	94.11
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	94.04
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	93.77
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	92.86
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	92.24
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	91.09
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	89.63
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	85.79

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.37  E-value=1.6e-12  Score=93.53  Aligned_cols=81  Identities=23%  Similarity=0.413  Sum_probs=41.7

Q ss_pred             CccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCCccE
Q 048450            3 RLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTLQE   82 (133)
Q Consensus         3 ~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~   82 (133)
                      +|++|+++++ .+..+|..++.+++|+.|+++++. +..+|.    .++.+++|++|++++|...+.+|..+..+++|+.
T Consensus       184 ~L~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~N~-l~~l~~----~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~  257 (328)
T 4fcg_A          184 NLQSLRLEWT-GIRSLPASIANLQNLKSLKIRNSP-LSALGP----AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKR  257 (328)
T ss_dssp             TCCEEEEEEE-CCCCCCGGGGGCTTCCEEEEESSC-CCCCCG----GGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCE
T ss_pred             CCCEEECcCC-CcCcchHhhcCCCCCCEEEccCCC-CCcCch----hhccCCCCCEEECcCCcchhhhHHHhcCCCCCCE
Confidence            4444444443 333444444455555555555533 444444    4555555555555555555555555555555555


Q ss_pred             EEEecCc
Q 048450           83 LTIHRCP   89 (133)
Q Consensus        83 L~i~~c~   89 (133)
                      |++++|.
T Consensus       258 L~L~~n~  264 (328)
T 4fcg_A          258 LILKDCS  264 (328)
T ss_dssp             EECTTCT
T ss_pred             EECCCCC
Confidence            5555554

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.35  E-value=4.2e-12  Score=91.41  Aligned_cols=105  Identities=25%  Similarity=0.311  Sum_probs=87.6

Q ss_pred             CCCccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCCc
Q 048450            1 MPRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTL   80 (133)
Q Consensus         1 l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L   80 (133)
                      +++|++|+++++ .+..+|..++.+++|+.|++++|...+.+|.    .++.+++|++|++++|+..+.+|..+..+++|
T Consensus       205 l~~L~~L~L~~N-~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~----~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L  279 (328)
T 4fcg_A          205 LQNLKSLKIRNS-PLSALGPAIHHLPKLEELDLRGCTALRNYPP----IFGGRAPLKRLILKDCSNLLTLPLDIHRLTQL  279 (328)
T ss_dssp             CTTCCEEEEESS-CCCCCCGGGGGCTTCCEEECTTCTTCCBCCC----CTTCCCCCCEEECTTCTTCCBCCTTGGGCTTC
T ss_pred             CCCCCEEEccCC-CCCcCchhhccCCCCCEEECcCCcchhhhHH----HhcCCCCCCEEECCCCCchhhcchhhhcCCCC
Confidence            478999999996 6677888899999999999999998899998    89999999999999999999999999999999


Q ss_pred             cEEEEecCchhHHhhcCCCCCCCcccCCCCceEEc
Q 048450           81 QELTIHRCPLLENRYREGKGEDWHKISHIPHIKWS  115 (133)
Q Consensus        81 ~~L~i~~c~~l~~~~~~~~~~~~~~i~~l~~l~~~  115 (133)
                      ++|++++|+.+.     ..+..+..+..+..+.+.
T Consensus       280 ~~L~L~~n~~~~-----~iP~~l~~L~~L~~l~l~  309 (328)
T 4fcg_A          280 EKLDLRGCVNLS-----RLPSLIAQLPANCIILVP  309 (328)
T ss_dssp             CEEECTTCTTCC-----CCCGGGGGSCTTCEEECC
T ss_pred             CEEeCCCCCchh-----hccHHHhhccCceEEeCC
Confidence            999999988655     233334445555554444

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.18  E-value=2.7e-10  Score=77.60  Aligned_cols=108  Identities=16%  Similarity=0.234  Sum_probs=54.7

Q ss_pred             CCccEEeecCCCCCccC-CccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCcc-CcCCCCCCC
Q 048450            2 PRLSSLTVGSCNKLKAL-PDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVL-PDYLLQTTT   79 (133)
Q Consensus         2 ~~L~~L~l~~~~~l~~l-p~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~l-p~~~~~l~~   79 (133)
                      ++|++|+++++ .+..+ |..+..+++|++|+++++. +..+|..   .+..+++|++|+++++. +..+ |..+..+++
T Consensus        56 ~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~---~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~  129 (220)
T 2v9t_B           56 KKLRRIDLSNN-QISELAPDAFQGLRSLNSLVLYGNK-ITELPKS---LFEGLFSLQLLLLNANK-INCLRVDAFQDLHN  129 (220)
T ss_dssp             TTCCEEECCSS-CCCEECTTTTTTCSSCCEEECCSSC-CCCCCTT---TTTTCTTCCEEECCSSC-CCCCCTTTTTTCTT
T ss_pred             CCCCEEECCCC-cCCCcCHHHhhCCcCCCEEECCCCc-CCccCHh---HccCCCCCCEEECCCCC-CCEeCHHHcCCCCC
Confidence            34555555553 33333 3444555555555555532 4455542   24455666666665533 3333 334555566


Q ss_pred             ccEEEEecCchhHHhhcCCCCCCCcccCCCCceEEcCccce
Q 048450           80 LQELTIHRCPLLENRYREGKGEDWHKISHIPHIKWSITRWC  120 (133)
Q Consensus        80 L~~L~i~~c~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~~  120 (133)
                      |+.|+++++.- .    ......+..+.++..+.+.++++.
T Consensus       130 L~~L~L~~N~l-~----~~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B          130 LNLLSLYDNKL-Q----TIAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             CCEEECCSSCC-S----CCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CCEEECCCCcC-C----EECHHHHhCCCCCCEEEeCCCCcC
Confidence            66666665541 1    011122445666777777776663

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.16  E-value=2.3e-10  Score=78.40  Aligned_cols=108  Identities=24%  Similarity=0.280  Sum_probs=60.3

Q ss_pred             CCccEEeecCCCCCccCCcc-CCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCCc
Q 048450            2 PRLSSLTVGSCNKLKALPDY-LLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTL   80 (133)
Q Consensus         2 ~~L~~L~l~~~~~l~~lp~~-~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L   80 (133)
                      ++|++|+++++ .+..+|.. +..+++|+.|+++++ .+..++..   .+..+++|++|++++ +.+..+|..+..+++|
T Consensus        64 ~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~~---~~~~l~~L~~L~Ls~-N~l~~lp~~~~~l~~L  137 (229)
T 3e6j_A           64 INLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGTN-QLTVLPSA---VFDRLVHLKELFMCC-NKLTELPRGIERLTHL  137 (229)
T ss_dssp             TTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTT---TTTTCTTCCEEECCS-SCCCSCCTTGGGCTTC
T ss_pred             cCCcEEECCCC-CCCCcChhhcccCCCcCEEECCCC-cCCccChh---HhCcchhhCeEeccC-CcccccCcccccCCCC
Confidence            45555555553 34455532 355666666666664 35555442   345566666666665 3355666666666677


Q ss_pred             cEEEEecCchhHHhhcCCCCCCCcccCCCCceEEcCccce
Q 048450           81 QELTIHRCPLLENRYREGKGEDWHKISHIPHIKWSITRWC  120 (133)
Q Consensus        81 ~~L~i~~c~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~~  120 (133)
                      +.|+++++. +..    .....+..+.++..+.+.++++.
T Consensus       138 ~~L~L~~N~-l~~----~~~~~~~~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A          138 THLALDQNQ-LKS----IPHGAFDRLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             SEEECCSSC-CCC----CCTTTTTTCTTCCEEECTTSCBC
T ss_pred             CEEECCCCc-CCc----cCHHHHhCCCCCCEEEeeCCCcc
Confidence            777776653 221    11123455667777777776653

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.15  E-value=4e-10  Score=75.38  Aligned_cols=109  Identities=15%  Similarity=0.262  Sum_probs=81.5

Q ss_pred             CCccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCc-CCCCCCCc
Q 048450            2 PRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPD-YLLQTTTL   80 (133)
Q Consensus         2 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~l~~L   80 (133)
                      ++|++|+++++ .+..+|..+..+++|+.|+++++. +..++..   .+..+++|++|+++++ .+..++. .+..+++|
T Consensus        31 ~~l~~L~L~~n-~i~~ip~~~~~l~~L~~L~Ls~N~-i~~i~~~---~f~~l~~L~~L~Ls~N-~l~~i~~~~f~~l~~L  104 (193)
T 2wfh_A           31 RDVTELYLDGN-QFTLVPKELSNYKHLTLIDLSNNR-ISTLSNQ---SFSNMTQLLTLILSYN-RLRCIPPRTFDGLKSL  104 (193)
T ss_dssp             TTCCEEECCSS-CCCSCCGGGGGCTTCCEEECCSSC-CCCCCTT---TTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTC
T ss_pred             CCCCEEECCCC-cCchhHHHhhcccCCCEEECCCCc-CCEeCHh---HccCCCCCCEEECCCC-ccCEeCHHHhCCCCCC
Confidence            46889999985 677888888889999999999864 7777653   6888999999999884 4667664 57788999


Q ss_pred             cEEEEecCchhHHhhcCCCCCCCcccCCCCceEEcCcccee
Q 048450           81 QELTIHRCPLLENRYREGKGEDWHKISHIPHIKWSITRWCC  121 (133)
Q Consensus        81 ~~L~i~~c~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~  121 (133)
                      +.|+++++. +..    .....+..+.++..+.+.++++.+
T Consensus       105 ~~L~L~~N~-l~~----~~~~~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A          105 RLLSLHGND-ISV----VPEGAFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             CEEECCSSC-CCB----CCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             CEEECCCCC-CCe----eChhhhhcCccccEEEeCCCCeec
Confidence            999999875 221    112235567778888888877643

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.11  E-value=6.1e-10  Score=75.83  Aligned_cols=109  Identities=10%  Similarity=0.230  Sum_probs=67.4

Q ss_pred             CCCccEEeecCCCCCccCCc-cCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCcc-CcCCCCCC
Q 048450            1 MPRLSSLTVGSCNKLKALPD-YLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVL-PDYLLQTT   78 (133)
Q Consensus         1 l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~l-p~~~~~l~   78 (133)
                      +++|++|+++++ .+..+++ .+..+++|+.|+++++. +..++.+   .++.+++|++|+++++. +..+ |..+..++
T Consensus        56 l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~---~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~  129 (220)
T 2v70_A           56 LPQLRKINFSNN-KITDIEEGAFEGASGVNEILLTSNR-LENVQHK---MFKGLESLKTLMLRSNR-ITCVGNDSFIGLS  129 (220)
T ss_dssp             CTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC-CCCCCGG---GGTTCSSCCEEECTTSC-CCCBCTTSSTTCT
T ss_pred             CCCCCEEECCCC-cCCEECHHHhCCCCCCCEEECCCCc-cCccCHh---HhcCCcCCCEEECCCCc-CCeECHhHcCCCc
Confidence            356777777764 4555553 46677777777777754 5555542   46677777777777744 4444 55666777


Q ss_pred             CccEEEEecCchhHHhhcCCCCCCCcccCCCCceEEcCccce
Q 048450           79 TLQELTIHRCPLLENRYREGKGEDWHKISHIPHIKWSITRWC  120 (133)
Q Consensus        79 ~L~~L~i~~c~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~~  120 (133)
                      +|+.|+++++. +..    ..+..+..+.++..+.+.++++.
T Consensus       130 ~L~~L~L~~N~-l~~----~~~~~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A          130 SVRLLSLYDNQ-ITT----VAPGAFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             TCSEEECTTSC-CCC----BCTTTTTTCTTCCEEECCSCCEE
T ss_pred             cCCEEECCCCc-CCE----ECHHHhcCCCCCCEEEecCcCCc
Confidence            77888777654 111    11233455667777777776654

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.08  E-value=9.6e-11  Score=92.66  Aligned_cols=84  Identities=17%  Similarity=0.111  Sum_probs=75.8

Q ss_pred             CCccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCCcc
Q 048450            2 PRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTLQ   81 (133)
Q Consensus         2 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~   81 (133)
                      ++|+.|+++++...+.+|..++.+++|+.|+++++...+.+|.    .++.+++|+.|+++++...+.+|..+..+++|+
T Consensus       632 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~----~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~  707 (768)
T 3rgz_A          632 GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPD----EVGDLRGLNILDLSSNKLDGRIPQAMSALTMLT  707 (768)
T ss_dssp             BCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCG----GGGGCTTCCEEECCSSCCEECCCGGGGGCCCCS
T ss_pred             ccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCCh----HHhCCCCCCEEECCCCcccCcCChHHhCCCCCC
Confidence            5789999999877778999999999999999999876678998    899999999999999877778999999999999


Q ss_pred             EEEEecCc
Q 048450           82 ELTIHRCP   89 (133)
Q Consensus        82 ~L~i~~c~   89 (133)
                      +|++++++
T Consensus       708 ~L~ls~N~  715 (768)
T 3rgz_A          708 EIDLSNNN  715 (768)
T ss_dssp             EEECCSSE
T ss_pred             EEECcCCc
Confidence            99999886

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.06  E-value=4.3e-10  Score=75.20  Aligned_cols=82  Identities=13%  Similarity=0.110  Sum_probs=59.6

Q ss_pred             CCCccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCcc-ccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCC
Q 048450            1 MPRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEE-LPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTT   79 (133)
Q Consensus         1 l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~-lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~   79 (133)
                      +++|++|++++| .+..++ .+..+++|++|+++++. +.. .+.    .++.+++|++|+++++......|..+..+++
T Consensus        65 l~~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~l~~n~-l~~~~~~----~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~  137 (197)
T 4ezg_A           65 AHNIKDLTINNI-HATNYN-PISGLSNLERLRIMGKD-VTSDKIP----NLSGLTSLTLLDISHSAHDDSILTKINTLPK  137 (197)
T ss_dssp             CTTCSEEEEESC-CCSCCG-GGTTCTTCCEEEEECTT-CBGGGSC----CCTTCTTCCEEECCSSBCBGGGHHHHTTCSS
T ss_pred             CCCCCEEEccCC-CCCcch-hhhcCCCCCEEEeECCc-cCcccCh----hhcCCCCCCEEEecCCccCcHhHHHHhhCCC
Confidence            467888888887 555554 67778888888888865 443 455    6777888888888876544445666677788


Q ss_pred             ccEEEEecCc
Q 048450           80 LQELTIHRCP   89 (133)
Q Consensus        80 L~~L~i~~c~   89 (133)
                      |++|++++|.
T Consensus       138 L~~L~L~~n~  147 (197)
T 4ezg_A          138 VNSIDLSYNG  147 (197)
T ss_dssp             CCEEECCSCT
T ss_pred             CCEEEccCCC
Confidence            8888888776

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.05  E-value=5.8e-10  Score=76.49  Aligned_cols=82  Identities=16%  Similarity=0.200  Sum_probs=39.3

Q ss_pred             CccEEeecCCCCCccCCc-cCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCc-CCCCCCCc
Q 048450            3 RLSSLTVGSCNKLKALPD-YLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPD-YLLQTTTL   80 (133)
Q Consensus         3 ~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~l~~L   80 (133)
                      +|++|+++++ .+..+|. .+..+++|+.|+++++..++.++..   .++.+++|++|++++|+.++.+|. .+..+++|
T Consensus        32 ~l~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~---~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L  107 (239)
T 2xwt_C           32 STQTLKLIET-HLRTIPSHAFSNLPNISRIYVSIDVTLQQLESH---SFYNLSKVTHIEIRNTRNLTYIDPDALKELPLL  107 (239)
T ss_dssp             TCCEEEEESC-CCSEECTTTTTTCTTCCEEEEECCSSCCEECTT---TEESCTTCCEEEEEEETTCCEECTTSEECCTTC
T ss_pred             cccEEEEeCC-cceEECHHHccCCCCCcEEeCCCCCCcceeCHh---HcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCC
Confidence            3555555553 3444443 3445555555555554334444432   344455555555554444444442 23344455


Q ss_pred             cEEEEecC
Q 048450           81 QELTIHRC   88 (133)
Q Consensus        81 ~~L~i~~c   88 (133)
                      ++|+++++
T Consensus       108 ~~L~l~~n  115 (239)
T 2xwt_C          108 KFLGIFNT  115 (239)
T ss_dssp             CEEEEEEE
T ss_pred             CEEeCCCC
Confidence            55555443

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.05  E-value=7.5e-10  Score=73.97  Aligned_cols=80  Identities=16%  Similarity=0.133  Sum_probs=61.5

Q ss_pred             CCccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCCcc
Q 048450            2 PRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTLQ   81 (133)
Q Consensus         2 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~   81 (133)
                      ++|++|+++++ .+..+| ++..+++|+.|++++| .+..++     .+..+++|++|+++++..-...|..+..+++|+
T Consensus        44 ~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~l~~n-~~~~~~-----~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~  115 (197)
T 4ezg_A           44 NSLTYITLANI-NVTDLT-GIEYAHNIKDLTINNI-HATNYN-----PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT  115 (197)
T ss_dssp             HTCCEEEEESS-CCSCCT-TGGGCTTCSEEEEESC-CCSCCG-----GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred             CCccEEeccCC-CccChH-HHhcCCCCCEEEccCC-CCCcch-----hhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence            56888888885 666777 6788888999999887 466654     477788899999988654444677788888899


Q ss_pred             EEEEecCc
Q 048450           82 ELTIHRCP   89 (133)
Q Consensus        82 ~L~i~~c~   89 (133)
                      +|+++++.
T Consensus       116 ~L~Ls~n~  123 (197)
T 4ezg_A          116 LLDISHSA  123 (197)
T ss_dssp             EEECCSSB
T ss_pred             EEEecCCc
Confidence            99888875

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.04  E-value=2.4e-09  Score=71.92  Aligned_cols=106  Identities=24%  Similarity=0.358  Sum_probs=44.8

Q ss_pred             CccEEeecCCCCCccCCcc-CCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcC-CCCCCCc
Q 048450            3 RLSSLTVGSCNKLKALPDY-LLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDY-LLQTTTL   80 (133)
Q Consensus         3 ~L~~L~l~~~~~l~~lp~~-~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~l~~L   80 (133)
                      +|++|+++++ .+..+|.. +..+++|++|+++++. +..+|..   .++.+++|++|+++++ .++.+|.. +..+++|
T Consensus        53 ~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~---~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L  126 (208)
T 2o6s_A           53 SLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTNQ-LQSLPNG---VFDKLTQLKELALNTN-QLQSLPDGVFDKLTQL  126 (208)
T ss_dssp             TCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTT---TTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTC
T ss_pred             cCcEEECCCC-ccCccChhhcCCCCCcCEEECCCCc-CCccCHh---HhcCccCCCEEEcCCC-cCcccCHhHhccCCcC
Confidence            3444444442 33333322 2344444444444432 3333331   2344555555555442 23344332 3445555


Q ss_pred             cEEEEecCchhHHhhcCCCCCCCcccCCCCceEEcCccc
Q 048450           81 QELTIHRCPLLENRYREGKGEDWHKISHIPHIKWSITRW  119 (133)
Q Consensus        81 ~~L~i~~c~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~  119 (133)
                      ++|+++++. +.    ......+..+.++..+.+.++.+
T Consensus       127 ~~L~l~~N~-l~----~~~~~~~~~l~~L~~L~l~~N~~  160 (208)
T 2o6s_A          127 KDLRLYQNQ-LK----SVPDGVFDRLTSLQYIWLHDNPW  160 (208)
T ss_dssp             CEEECCSSC-CS----CCCTTTTTTCTTCCEEECCSCCB
T ss_pred             CEEECCCCc-cc----eeCHHHhccCCCccEEEecCCCe
Confidence            555555442 11    01111234455556666655443

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.04  E-value=2e-09  Score=75.25  Aligned_cols=81  Identities=27%  Similarity=0.333  Sum_probs=39.1

Q ss_pred             CCccEEeecCCCCCccCCcc-CCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcC-CCCCCC
Q 048450            2 PRLSSLTVGSCNKLKALPDY-LLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDY-LLQTTT   79 (133)
Q Consensus         2 ~~L~~L~l~~~~~l~~lp~~-~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~l~~   79 (133)
                      ++|++|+++++ .+..++.. ++.+++|++|+++++. +..++..   .++.+++|++|+++++ .++.+|.. +..+++
T Consensus        85 ~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~---~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~  158 (272)
T 3rfs_A           85 TNLTYLILTGN-QLQSLPNGVFDKLTNLKELVLVENQ-LQSLPDG---VFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTN  158 (272)
T ss_dssp             TTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTT---TTTTCTTCCEEECCSS-CCCCCCTTTTTTCTT
T ss_pred             CCCCEEECCCC-ccCccChhHhcCCcCCCEEECCCCc-CCccCHH---HhccCCCCCEEECCCC-ccCccCHHHhccCcc
Confidence            45666666664 34444432 3555666666665543 4444431   2444555555555543 23333332 234445


Q ss_pred             ccEEEEecC
Q 048450           80 LQELTIHRC   88 (133)
Q Consensus        80 L~~L~i~~c   88 (133)
                      |+.|++++|
T Consensus       159 L~~L~l~~n  167 (272)
T 3rfs_A          159 LTELDLSYN  167 (272)
T ss_dssp             CCEEECCSS
T ss_pred             CCEEECCCC
Confidence            555555444

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.03  E-value=2.9e-09  Score=74.67  Aligned_cols=81  Identities=21%  Similarity=0.270  Sum_probs=35.0

Q ss_pred             CccEEeecCCCCCccC-CccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCcc-CcCCCCCCCc
Q 048450            3 RLSSLTVGSCNKLKAL-PDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVL-PDYLLQTTTL   80 (133)
Q Consensus         3 ~L~~L~l~~~~~l~~l-p~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~l-p~~~~~l~~L   80 (133)
                      +|++|+++++ .+..+ |..+..+++|+.|+++++..++.++..   .+..+++|++|+++++. +..+ |..+..+++|
T Consensus        57 ~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~---~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L  131 (285)
T 1ozn_A           57 NLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDNAQLRSVDPA---TFHGLGRLHTLHLDRCG-LQELGPGLFRGLAAL  131 (285)
T ss_dssp             TCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSCTTCCCCCTT---TTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTC
T ss_pred             CCCEEECCCC-ccceeCHhhcCCccCCCEEeCCCCCCccccCHH---HhcCCcCCCEEECCCCc-CCEECHhHhhCCcCC
Confidence            4444444443 23333 233444555555555544334444221   34444555555554433 2222 3334444455


Q ss_pred             cEEEEecC
Q 048450           81 QELTIHRC   88 (133)
Q Consensus        81 ~~L~i~~c   88 (133)
                      ++|+++++
T Consensus       132 ~~L~l~~n  139 (285)
T 1ozn_A          132 QYLYLQDN  139 (285)
T ss_dssp             CEEECCSS
T ss_pred             CEEECCCC
Confidence            55555443

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.03  E-value=3.1e-09  Score=73.40  Aligned_cols=63  Identities=16%  Similarity=0.291  Sum_probs=29.2

Q ss_pred             CCCCCccEEeecCCCCCCccCc-CCCCCCCccEEEEecCchhHHhhcCCCCCCCcccCCCCceEEcCccc
Q 048450           51 TDIPRLTSLWISDCPNLKVLPD-YLLQTTTLQELTIHRCPLLENRYREGKGEDWHKISHIPHIKWSITRW  119 (133)
Q Consensus        51 ~~l~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~  119 (133)
                      +.+++|++|+++++ .++.+|. .+..+++|++|+++++. +.    ......+..+.++..+.+.++.+
T Consensus       128 ~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~-l~----~~~~~~~~~l~~L~~L~l~~N~~  191 (251)
T 3m19_A          128 DRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTNQ-LQ----SVPHGAFDRLGKLQTITLFGNQF  191 (251)
T ss_dssp             TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CS----CCCTTTTTTCTTCCEEECCSCCB
T ss_pred             ccCCcccEEECcCC-cCCccCHHHcCcCcCCCEEECCCCc-CC----ccCHHHHhCCCCCCEEEeeCCce
Confidence            44455555555443 3444443 24445555555555443 11    01112234455666666666555

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.01  E-value=2.6e-09  Score=71.25  Aligned_cols=107  Identities=11%  Similarity=0.210  Sum_probs=74.6

Q ss_pred             CccEEeecCCCCCccCCcc--CCCCCCccEEEeccCCCCccc-cccccccCCCCCCccEEeecCCCCCCccCc-CCCCCC
Q 048450            3 RLSSLTVGSCNKLKALPDY--LLQTTALQELSICSCDLLEEL-PILEDRRTTDIPRLTSLWISDCPNLKVLPD-YLLQTT   78 (133)
Q Consensus         3 ~L~~L~l~~~~~l~~lp~~--~~~l~~L~~L~l~~c~~l~~l-p~~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~l~   78 (133)
                      ++++|+++++ .+..++..  ++.+++|+.|+++++. +..+ |.    .++.+++|++|+++++. ++.++. .+..++
T Consensus        30 ~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~----~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~  102 (192)
T 1w8a_A           30 HTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQ-LTGIEPN----AFEGASHIQELQLGENK-IKEISNKMFLGLH  102 (192)
T ss_dssp             TCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSC-CCCBCTT----TTTTCTTCCEEECCSCC-CCEECSSSSTTCT
T ss_pred             CCCEEECCCC-cCCccCCccccccCCCCCEEECCCCC-CCCcCHh----HcCCcccCCEEECCCCc-CCccCHHHhcCCC
Confidence            6788888885 66666643  6788889999998865 6555 45    78888889999988844 666654 467788


Q ss_pred             CccEEEEecCchhHHhhcCCCCCCCcccCCCCceEEcCcccee
Q 048450           79 TLQELTIHRCPLLENRYREGKGEDWHKISHIPHIKWSITRWCC  121 (133)
Q Consensus        79 ~L~~L~i~~c~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~  121 (133)
                      +|++|+++++..-.     ..+..+..+.++..+.+.++.+.+
T Consensus       103 ~L~~L~L~~N~l~~-----~~~~~~~~l~~L~~L~L~~N~l~c  140 (192)
T 1w8a_A          103 QLKTLNLYDNQISC-----VMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             TCCEEECCSSCCCE-----ECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             CCCEEECCCCcCCe-----eCHHHhhcCCCCCEEEeCCCCccC
Confidence            88999888875211     112334566677777777766543

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.01  E-value=4.4e-09  Score=73.39  Aligned_cols=65  Identities=15%  Similarity=0.282  Sum_probs=30.8

Q ss_pred             CCCCCCccEEeecCCCCCCccCcC-CCCCCCccEEEEecCchhHHhhcCCCCCCCcccCCCCceEEcCccce
Q 048450           50 TTDIPRLTSLWISDCPNLKVLPDY-LLQTTTLQELTIHRCPLLENRYREGKGEDWHKISHIPHIKWSITRWC  120 (133)
Q Consensus        50 ~~~l~~L~~L~l~~c~~l~~lp~~-~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~~  120 (133)
                      ++.+++|++|+++++ .+..+|.. +..+++|++|+++++. +..    .....+..+.++..+.+.++++.
T Consensus       153 ~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~----~~~~~~~~l~~L~~L~l~~N~~~  218 (270)
T 2o6q_A          153 FDKLTSLKELRLYNN-QLKRVPEGAFDKLTELKTLKLDNNQ-LKR----VPEGAFDSLEKLKMLQLQENPWD  218 (270)
T ss_dssp             TTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC-CSC----CCTTTTTTCTTCCEEECCSSCBC
T ss_pred             ccCCcccceeEecCC-cCcEeChhHhccCCCcCEEECCCCc-CCc----CCHHHhccccCCCEEEecCCCee
Confidence            344555555555443 23334332 4445555555555543 110    11112345566667777776653

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.01  E-value=3.3e-09  Score=75.07  Aligned_cols=82  Identities=27%  Similarity=0.371  Sum_probs=46.0

Q ss_pred             CCccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcC-CCCCCCc
Q 048450            2 PRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDY-LLQTTTL   80 (133)
Q Consensus         2 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~l~~L   80 (133)
                      ++|++|+++++ .+..+|..+..+++|+.|+++++. ++.+|.+   .+..+++|++|+++++ .++.+|.. +..+++|
T Consensus        77 ~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~---~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L  150 (290)
T 1p9a_G           77 PVLGTLDLSHN-QLQSLPLLGQTLPALTVLDVSFNR-LTSLPLG---ALRGLGELQELYLKGN-ELKTLPPGLLTPTPKL  150 (290)
T ss_dssp             TTCCEEECCSS-CCSSCCCCTTTCTTCCEEECCSSC-CCCCCSS---TTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTC
T ss_pred             CcCCEEECCCC-cCCcCchhhccCCCCCEEECCCCc-CcccCHH---HHcCCCCCCEEECCCC-CCCccChhhcccccCC
Confidence            45666666653 455566555666666666666643 5555532   4555666666666653 34455443 3455566


Q ss_pred             cEEEEecCc
Q 048450           81 QELTIHRCP   89 (133)
Q Consensus        81 ~~L~i~~c~   89 (133)
                      +.|+++++.
T Consensus       151 ~~L~L~~N~  159 (290)
T 1p9a_G          151 EKLSLANNN  159 (290)
T ss_dssp             CEEECTTSC
T ss_pred             CEEECCCCc
Confidence            666665543

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.01  E-value=4.2e-10  Score=73.27  Aligned_cols=81  Identities=16%  Similarity=0.215  Sum_probs=48.5

Q ss_pred             CCccEEeecCCCCCc--cCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCC
Q 048450            2 PRLSSLTVGSCNKLK--ALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTT   79 (133)
Q Consensus         2 ~~L~~L~l~~~~~l~--~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~   79 (133)
                      ++|++|++++|. +.  .+|..+..+++|+.|++++|. +..+ .    .++.+++|++|+++++.....+|..+..+++
T Consensus        24 ~~L~~L~l~~n~-l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~-~----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~   96 (168)
T 2ell_A           24 AAVRELVLDNCK-SNDGKIEGLTAEFVNLEFLSLINVG-LISV-S----NLPKLPKLKKLELSENRIFGGLDMLAEKLPN   96 (168)
T ss_dssp             TSCSEEECCSCB-CBTTBCSSCCGGGGGCCEEEEESSC-CCCC-S----SCCCCSSCCEEEEESCCCCSCCCHHHHHCTT
T ss_pred             ccCCEEECCCCC-CChhhHHHHHHhCCCCCEEeCcCCC-CCCh-h----hhccCCCCCEEECcCCcCchHHHHHHhhCCC
Confidence            457777777753 44  666555666777777777654 5555 3    5666666667766664432224444444566


Q ss_pred             ccEEEEecCc
Q 048450           80 LQELTIHRCP   89 (133)
Q Consensus        80 L~~L~i~~c~   89 (133)
                      |+.|+++++.
T Consensus        97 L~~L~Ls~N~  106 (168)
T 2ell_A           97 LTHLNLSGNK  106 (168)
T ss_dssp             CCEEECBSSS
T ss_pred             CCEEeccCCc
Confidence            6666666553

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.01  E-value=5.1e-10  Score=88.32  Aligned_cols=105  Identities=14%  Similarity=0.151  Sum_probs=78.9

Q ss_pred             CCCccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCCc
Q 048450            1 MPRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTL   80 (133)
Q Consensus         1 l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L   80 (133)
                      +++|+.|+|+++ .+..+|..+..+++|+.|+++++. +..+|.    .++.+++|++|+++++. +..+|..+..+++|
T Consensus       223 l~~L~~L~Ls~n-~l~~l~~~~~~l~~L~~L~Ls~N~-l~~lp~----~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L  295 (727)
T 4b8c_D          223 DQLWHALDLSNL-QIFNISANIFKYDFLTRLYLNGNS-LTELPA----EIKNLSNLRVLDLSHNR-LTSLPAELGSCFQL  295 (727)
T ss_dssp             CCCCCEEECTTS-CCSCCCGGGGGCCSCSCCBCTTSC-CSCCCG----GGGGGTTCCEEECTTSC-CSSCCSSGGGGTTC
T ss_pred             CCCCcEEECCCC-CCCCCChhhcCCCCCCEEEeeCCc-CcccCh----hhhCCCCCCEEeCcCCc-CCccChhhcCCCCC
Confidence            357888888885 566788777788889999998864 668887    78888889999998854 66888888888889


Q ss_pred             cEEEEecCchhHHhhcCCCCCCCcccCCCCceEEcCcc
Q 048450           81 QELTIHRCPLLENRYREGKGEDWHKISHIPHIKWSITR  118 (133)
Q Consensus        81 ~~L~i~~c~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~  118 (133)
                      ++|+++++. +.     ..+..+..+.++..|.+.++.
T Consensus       296 ~~L~L~~N~-l~-----~lp~~~~~l~~L~~L~L~~N~  327 (727)
T 4b8c_D          296 KYFYFFDNM-VT-----TLPWEFGNLCNLQFLGVEGNP  327 (727)
T ss_dssp             SEEECCSSC-CC-----CCCSSTTSCTTCCCEECTTSC
T ss_pred             CEEECCCCC-CC-----ccChhhhcCCCccEEeCCCCc
Confidence            999888874 22     223335566777777776653

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.99  E-value=3.3e-09  Score=69.80  Aligned_cols=82  Identities=22%  Similarity=0.275  Sum_probs=56.8

Q ss_pred             CCccEEeecCCCCCccC-CccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcC-CCCCCC
Q 048450            2 PRLSSLTVGSCNKLKAL-PDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDY-LLQTTT   79 (133)
Q Consensus         2 ~~L~~L~l~~~~~l~~l-p~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~l~~   79 (133)
                      ++|++|+++++ .+..+ |..++.+++|+.|+++++ ++..+|..   .++.+++|++|++++ +.++.+|.. +..+++
T Consensus        33 ~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~---~~~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~  106 (174)
T 2r9u_A           33 TDKQRLWLNNN-QITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTG---VFDKLTQLTQLDLND-NHLKSIPRGAFDNLKS  106 (174)
T ss_dssp             TTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTT---TTTTCTTCCEEECCS-SCCCCCCTTTTTTCTT
T ss_pred             CCCcEEEeCCC-CccccCHHHhcCCcCCCEEECCCC-CCCccChh---HhCCcchhhEEECCC-CccceeCHHHhccccC
Confidence            45777888774 45555 345677788888888775 47777762   346778888888877 456677664 667778


Q ss_pred             ccEEEEecCc
Q 048450           80 LQELTIHRCP   89 (133)
Q Consensus        80 L~~L~i~~c~   89 (133)
                      |++|++++++
T Consensus       107 L~~L~L~~N~  116 (174)
T 2r9u_A          107 LTHIYLYNNP  116 (174)
T ss_dssp             CSEEECCSSC
T ss_pred             CCEEEeCCCC
Confidence            8888887664

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.98  E-value=9.7e-09  Score=67.30  Aligned_cols=109  Identities=24%  Similarity=0.391  Sum_probs=79.3

Q ss_pred             CCccEEeecCCCCCccCCc-cCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcC-CCCCCC
Q 048450            2 PRLSSLTVGSCNKLKALPD-YLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDY-LLQTTT   79 (133)
Q Consensus         2 ~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~l~~   79 (133)
                      ++|++|+++++ .+..+|. .++.+++|++|+++++ .+..+|..   .++.+++|++|+++++ .++.+|.. +..+++
T Consensus        28 ~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~---~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~  101 (177)
T 2o6r_A           28 SSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDG---VFDKLTKLTILYLHEN-KLQSLPNGVFDKLTQ  101 (177)
T ss_dssp             TTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTT---TTTTCTTCCEEECCSS-CCCCCCTTTTTTCTT
T ss_pred             CCCcEEEeCCC-cccEeCHHHhcCcccccEEECCCC-cceEeChh---HccCCCccCEEECCCC-CccccCHHHhhCCcc
Confidence            57889999985 5667774 3578899999999986 47777762   4678999999999885 47777654 578889


Q ss_pred             ccEEEEecCchhHHhhcCCCCCCCcccCCCCceEEcCcccee
Q 048450           80 LQELTIHRCPLLENRYREGKGEDWHKISHIPHIKWSITRWCC  121 (133)
Q Consensus        80 L~~L~i~~c~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~  121 (133)
                      |+.|+++++. +..    .....+..+.++..+.+.++.+.+
T Consensus       102 L~~L~l~~N~-l~~----~~~~~~~~l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A          102 LKELALDTNQ-LKS----VPDGIFDRLTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             CCEEECCSSC-CSC----CCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             cCEEECcCCc-ceE----eCHHHhcCCcccCEEEecCCCeec
Confidence            9999999875 321    112224556778888888776543

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=98.98  E-value=3.2e-09  Score=78.72  Aligned_cols=109  Identities=17%  Similarity=0.273  Sum_probs=54.6

Q ss_pred             CCccEEeecCCCCCccC-CccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCcc-CcCCCCCCC
Q 048450            2 PRLSSLTVGSCNKLKAL-PDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVL-PDYLLQTTT   79 (133)
Q Consensus         2 ~~L~~L~l~~~~~l~~l-p~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~l-p~~~~~l~~   79 (133)
                      ++|++|+++++. +..+ |..+..+++|+.|+++++. +..++..   .++.+++|++|+++++. +..+ |..+..+++
T Consensus       299 ~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~---~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~  372 (455)
T 3v47_A          299 TDLEQLTLAQNE-INKIDDNAFWGLTHLLKLNLSQNF-LGSIDSR---MFENLDKLEVLDLSYNH-IRALGDQSFLGLPN  372 (455)
T ss_dssp             TTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSC-CCEECGG---GGTTCTTCCEEECCSSC-CCEECTTTTTTCTT
T ss_pred             CCCCEEECCCCc-ccccChhHhcCcccCCEEECCCCc-cCCcChh---HhcCcccCCEEECCCCc-ccccChhhcccccc
Confidence            344555555432 2222 3344555555555555543 3433221   45556666666666644 3333 455566666


Q ss_pred             ccEEEEecCchhHHhhcCCCCCCCcccCCCCceEEcCcccee
Q 048450           80 LQELTIHRCPLLENRYREGKGEDWHKISHIPHIKWSITRWCC  121 (133)
Q Consensus        80 L~~L~i~~c~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~  121 (133)
                      |++|+++++. +..    .....+..++++..+.+.++++.+
T Consensus       373 L~~L~L~~N~-l~~----~~~~~~~~l~~L~~L~l~~N~l~~  409 (455)
T 3v47_A          373 LKELALDTNQ-LKS----VPDGIFDRLTSLQKIWLHTNPWDC  409 (455)
T ss_dssp             CCEEECCSSC-CSC----CCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             ccEEECCCCc-ccc----CCHhHhccCCcccEEEccCCCccc
Confidence            6666666654 211    111123456666777777665543

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=98.98  E-value=1.8e-09  Score=81.96  Aligned_cols=111  Identities=19%  Similarity=0.263  Sum_probs=68.5

Q ss_pred             CCccEEeecCCCCCccCCccCCCCCCccEEEeccCCCC-ccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCCc
Q 048450            2 PRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLL-EELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTL   80 (133)
Q Consensus         2 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l-~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L   80 (133)
                      ++|++|++++|......|..+..+++|+.|++++|... ..+|.    .++.+++|++|++++|......|..+..+++|
T Consensus       421 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  496 (570)
T 2z63_A          421 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD----IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL  496 (570)
T ss_dssp             TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECS----CCTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred             CCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchh----hhhcccCCCEEECCCCccccCChhhhhcccCC
Confidence            45666666665433334455666777777777776532 24666    67777788888887765333336667777788


Q ss_pred             cEEEEecCchhHHhhcCCCCCCCcccCCCCceEEcCcccee
Q 048450           81 QELTIHRCPLLENRYREGKGEDWHKISHIPHIKWSITRWCC  121 (133)
Q Consensus        81 ~~L~i~~c~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~  121 (133)
                      ++|++++|. +..    .....+..+.++..+.+.++++.+
T Consensus       497 ~~L~l~~n~-l~~----~~~~~~~~l~~L~~L~l~~N~~~~  532 (570)
T 2z63_A          497 QVLNMASNQ-LKS----VPDGIFDRLTSLQKIWLHTNPWDC  532 (570)
T ss_dssp             CEEECCSSC-CSC----CCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             CEEeCCCCc-CCC----CCHHHhhcccCCcEEEecCCcccC
Confidence            888887764 221    112234556677777777766543

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=98.97  E-value=1.1e-09  Score=86.73  Aligned_cols=84  Identities=18%  Similarity=0.210  Sum_probs=43.5

Q ss_pred             CCccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCCcc
Q 048450            2 PRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTLQ   81 (133)
Q Consensus         2 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~   81 (133)
                      ++|+.|+++++...+.+|..++.+++|+.|++++|...+.+|.    .++.+++|++|++++|...+.+|.+++.+++|+
T Consensus       442 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~----~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~  517 (768)
T 3rgz_A          442 SKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPS----GLSNCTNLNWISLSNNRLTGEIPKWIGRLENLA  517 (768)
T ss_dssp             TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCG----GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCC
T ss_pred             CCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCH----HHhcCCCCCEEEccCCccCCcCChHHhcCCCCC
Confidence            3444555554433334444445555555555555443334444    455555566666655554445555555555666


Q ss_pred             EEEEecCc
Q 048450           82 ELTIHRCP   89 (133)
Q Consensus        82 ~L~i~~c~   89 (133)
                      .|++++|.
T Consensus       518 ~L~L~~N~  525 (768)
T 3rgz_A          518 ILKLSNNS  525 (768)
T ss_dssp             EEECCSSC
T ss_pred             EEECCCCc
Confidence            66665554

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=98.95  E-value=9e-09  Score=72.80  Aligned_cols=109  Identities=28%  Similarity=0.361  Sum_probs=79.3

Q ss_pred             CCCccEEeecCCCCCccCC-ccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCC-CCCC
Q 048450            1 MPRLSSLTVGSCNKLKALP-DYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYL-LQTT   78 (133)
Q Consensus         1 l~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~-~~l~   78 (133)
                      +++|++|+++++ .+..+| ..+..+++|+.|+++++. +..+|.+   .+..+++|+.|+++++ .++.+|... ..++
T Consensus        99 l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~N~-l~~~~~~---~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~  172 (290)
T 1p9a_G           99 LPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGNE-LKTLPPG---LLTPTPKLEKLSLANN-NLTELPAGLLNGLE  172 (290)
T ss_dssp             CTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTTSC-CCCCCTT---TTTTCTTCCEEECTTS-CCSCCCTTTTTTCT
T ss_pred             CCCCCEEECCCC-cCcccCHHHHcCCCCCCEEECCCCC-CCccChh---hcccccCCCEEECCCC-cCCccCHHHhcCcC
Confidence            468899999985 677777 457889999999999864 7777763   5678899999999884 577888654 6788


Q ss_pred             CccEEEEecCchhHHhhcCCCCCCCcccCCCCceEEcCcccee
Q 048450           79 TLQELTIHRCPLLENRYREGKGEDWHKISHIPHIKWSITRWCC  121 (133)
Q Consensus        79 ~L~~L~i~~c~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~  121 (133)
                      +|+.|+++++. +.     ..+..+.....+..+.+.+++|.+
T Consensus       173 ~L~~L~L~~N~-l~-----~ip~~~~~~~~L~~l~L~~Np~~C  209 (290)
T 1p9a_G          173 NLDTLLLQENS-LY-----TIPKGFFGSHLLPFAFLHGNPWLC  209 (290)
T ss_dssp             TCCEEECCSSC-CC-----CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             CCCEEECCCCc-CC-----ccChhhcccccCCeEEeCCCCccC
Confidence            99999998875 22     122223344567777777777644

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=98.94  E-value=1.2e-08  Score=70.48  Aligned_cols=104  Identities=22%  Similarity=0.348  Sum_probs=54.1

Q ss_pred             CCccEEeecCCCCCccCC-ccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcC-CCCCCC
Q 048450            2 PRLSSLTVGSCNKLKALP-DYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDY-LLQTTT   79 (133)
Q Consensus         2 ~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~l~~   79 (133)
                      ++|++|+++++ .+..++ ..+..+++|+.|+++++. +..+|..   .++.+++|++|+++++ .++.+|.. +..+++
T Consensus        59 ~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~---~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~  132 (251)
T 3m19_A           59 TKLTWLNLDYN-QLQTLSAGVFDDLTELGTLGLANNQ-LASLPLG---VFDHLTQLDKLYLGGN-QLKSLPSGVFDRLTK  132 (251)
T ss_dssp             TTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTT---TTTTCTTCCEEECCSS-CCCCCCTTTTTTCTT
T ss_pred             ccCCEEECCCC-cCCccCHhHhccCCcCCEEECCCCc-ccccChh---HhcccCCCCEEEcCCC-cCCCcChhHhccCCc
Confidence            45555555553 333333 234556666666666543 4444432   4456666666666663 35555544 355667


Q ss_pred             ccEEEEecCchhHHhhcCCCCCCCcccCCCCceEEcC
Q 048450           80 LQELTIHRCPLLENRYREGKGEDWHKISHIPHIKWSI  116 (133)
Q Consensus        80 L~~L~i~~c~~l~~~~~~~~~~~~~~i~~l~~l~~~~  116 (133)
                      |++|+++++. +..    .....+..+.++..|.+.+
T Consensus       133 L~~L~Ls~N~-l~~----~~~~~~~~l~~L~~L~L~~  164 (251)
T 3m19_A          133 LKELRLNTNQ-LQS----IPAGAFDKLTNLQTLSLST  164 (251)
T ss_dssp             CCEEECCSSC-CCC----CCTTTTTTCTTCCEEECCS
T ss_pred             ccEEECcCCc-CCc----cCHHHcCcCcCCCEEECCC
Confidence            7777776653 221    1111234455566665554

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=98.94  E-value=6.4e-09  Score=77.24  Aligned_cols=110  Identities=21%  Similarity=0.396  Sum_probs=56.1

Q ss_pred             CCCccEEeecCCCCCccCCc-cCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCC--------------
Q 048450            1 MPRLSSLTVGSCNKLKALPD-YLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCP--------------   65 (133)
Q Consensus         1 l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~--------------   65 (133)
                      +++|++|+++++..+..++. .+..+++|+.|+++++. +..+|.     +..+++|++|+++++.              
T Consensus       159 l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~-----~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  232 (440)
T 3zyj_A          159 IPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN-LREIPN-----LTPLIKLDELDLSGNHLSAIRPGSFQGLMH  232 (440)
T ss_dssp             CTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC-CSSCCC-----CTTCSSCCEEECTTSCCCEECTTTTTTCTT
T ss_pred             CcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc-Cccccc-----cCCCcccCEEECCCCccCccChhhhccCcc
Confidence            35667777776666666653 34556666666666542 444442     4444455555554432              


Q ss_pred             ---------CCCcc-CcCCCCCCCccEEEEecCchhHHhhcCCCCCCCcccCCCCceEEcCcccee
Q 048450           66 ---------NLKVL-PDYLLQTTTLQELTIHRCPLLENRYREGKGEDWHKISHIPHIKWSITRWCC  121 (133)
Q Consensus        66 ---------~l~~l-p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~  121 (133)
                               .+..+ +..+..+++|+.|+++++. +.    ......+..+.++..|.+.++++.|
T Consensus       233 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~----~~~~~~~~~l~~L~~L~L~~Np~~C  293 (440)
T 3zyj_A          233 LQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNN-LT----LLPHDLFTPLHHLERIHLHHNPWNC  293 (440)
T ss_dssp             CCEEECTTCCCCEECTTSSTTCTTCCEEECTTSC-CC----CCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred             CCEEECCCCceeEEChhhhcCCCCCCEEECCCCC-CC----ccChhHhccccCCCEEEcCCCCccC
Confidence                     12222 2234444555555555443 11    1112223456677777777776643

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=98.94  E-value=3.5e-09  Score=72.53  Aligned_cols=107  Identities=19%  Similarity=0.230  Sum_probs=80.7

Q ss_pred             CCCccEEeecCCCCCccCCc-cCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCC
Q 048450            1 MPRLSSLTVGSCNKLKALPD-YLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTT   79 (133)
Q Consensus         1 l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~   79 (133)
                      +++|++|+++++..++.++. .+..+++|+.|++++|..++.++..   .+..+++|++|+++++. ++.+|. +..+++
T Consensus        54 l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~---~f~~l~~L~~L~l~~n~-l~~lp~-~~~l~~  128 (239)
T 2xwt_C           54 LPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPD---ALKELPLLKFLGIFNTG-LKMFPD-LTKVYS  128 (239)
T ss_dssp             CTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTT---SEECCTTCCEEEEEEEC-CCSCCC-CTTCCB
T ss_pred             CCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHH---HhCCCCCCCEEeCCCCC-Cccccc-cccccc
Confidence            47899999999755888885 5688999999999986678888753   67789999999999865 777886 777778


Q ss_pred             cc---EEEEecCchhHHhhcCCCCCCCcccCCCC-ceEEcC
Q 048450           80 LQ---ELTIHRCPLLENRYREGKGEDWHKISHIP-HIKWSI  116 (133)
Q Consensus        80 L~---~L~i~~c~~l~~~~~~~~~~~~~~i~~l~-~l~~~~  116 (133)
                      |+   .|++++++.+....    ...+..+.++. .+.+.+
T Consensus       129 L~~L~~L~l~~N~~l~~i~----~~~~~~l~~L~~~L~l~~  165 (239)
T 2xwt_C          129 TDIFFILEITDNPYMTSIP----VNAFQGLCNETLTLKLYN  165 (239)
T ss_dssp             CCSEEEEEEESCTTCCEEC----TTTTTTTBSSEEEEECCS
T ss_pred             cccccEEECCCCcchhhcC----cccccchhcceeEEEcCC
Confidence            87   99999985444221    12244566666 666654

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.94  E-value=7.1e-09  Score=67.89  Aligned_cols=82  Identities=22%  Similarity=0.263  Sum_probs=50.3

Q ss_pred             CCccEEeecCCCCCccC-CccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcC-CCCCCC
Q 048450            2 PRLSSLTVGSCNKLKAL-PDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDY-LLQTTT   79 (133)
Q Consensus         2 ~~L~~L~l~~~~~l~~l-p~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~l~~   79 (133)
                      ++|++|+++++ .+..+ |..+..+++|+.|+++++ ++..+|.+   .++.+++|++|++++ +.++.+|.. +..+++
T Consensus        30 ~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~---~f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~  103 (170)
T 3g39_A           30 TTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAG---VFDKLTQLTQLSLND-NQLKSIPRGAFDNLKS  103 (170)
T ss_dssp             TTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTT---TTTTCTTCCEEECCS-SCCCCCCTTTTTTCTT
T ss_pred             CCCcEEEcCCC-cCCccChhhhcCcccCCEEECCCC-CcCccChh---hccCCCCCCEEECCC-CccCEeCHHHhcCCCC
Confidence            35666777664 45555 344566777777777764 36666652   345677777777766 345566543 556667


Q ss_pred             ccEEEEecCc
Q 048450           80 LQELTIHRCP   89 (133)
Q Consensus        80 L~~L~i~~c~   89 (133)
                      |+.|++++++
T Consensus       104 L~~L~L~~N~  113 (170)
T 3g39_A          104 LTHIWLLNNP  113 (170)
T ss_dssp             CCEEECCSSC
T ss_pred             CCEEEeCCCC
Confidence            7777776653

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.94  E-value=6.1e-09  Score=69.40  Aligned_cols=84  Identities=20%  Similarity=0.323  Sum_probs=68.4

Q ss_pred             CCCccEEeecCCCCCccC-CccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCC
Q 048450            1 MPRLSSLTVGSCNKLKAL-PDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTT   79 (133)
Q Consensus         1 l~~L~~L~l~~~~~l~~l-p~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~   79 (133)
                      +++|++|+++++ .+..+ |..+..+++|+.|+++++. +..++..   .++.+++|++|+++++......|..+..+++
T Consensus        53 l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~---~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~  127 (192)
T 1w8a_A           53 LPHLVKLELKRN-QLTGIEPNAFEGASHIQELQLGENK-IKEISNK---MFLGLHQLKTLNLYDNQISCVMPGSFEHLNS  127 (192)
T ss_dssp             CTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSCC-CCEECSS---SSTTCTTCCEEECCSSCCCEECTTSSTTCTT
T ss_pred             CCCCCEEECCCC-CCCCcCHhHcCCcccCCEEECCCCc-CCccCHH---HhcCCCCCCEEECCCCcCCeeCHHHhhcCCC
Confidence            478999999996 55555 6778999999999999965 7777663   5888999999999996544444777889999


Q ss_pred             ccEEEEecCc
Q 048450           80 LQELTIHRCP   89 (133)
Q Consensus        80 L~~L~i~~c~   89 (133)
                      |++|++++++
T Consensus       128 L~~L~L~~N~  137 (192)
T 1w8a_A          128 LTSLNLASNP  137 (192)
T ss_dssp             CCEEECTTCC
T ss_pred             CCEEEeCCCC
Confidence            9999998775

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=98.94  E-value=1.8e-09  Score=78.91  Aligned_cols=104  Identities=18%  Similarity=0.208  Sum_probs=46.3

Q ss_pred             CCccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCCcc
Q 048450            2 PRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTLQ   81 (133)
Q Consensus         2 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~   81 (133)
                      ++|++|+++++......|..+..+++|+.|+++++. +..+|.    ..+.+++|++|+++++ .+..+|..+..+++|+
T Consensus       248 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~----~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~  321 (390)
T 3o6n_A          248 PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNL----YGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLE  321 (390)
T ss_dssp             TTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSC-CCEEEC----SSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCS
T ss_pred             CCccEEECCCCcCCCcChhHccccccCCEEECCCCc-CcccCc----ccCCCCCCCEEECCCC-cceecCccccccCcCC
Confidence            344444444432222223344445555555555432 444444    3444555555555543 2444444444444555


Q ss_pred             EEEEecCchhHHhhcCCCCCCCcccCCCCceEEcCccc
Q 048450           82 ELTIHRCPLLENRYREGKGEDWHKISHIPHIKWSITRW  119 (133)
Q Consensus        82 ~L~i~~c~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~  119 (133)
                      .|++++++- .       ......+..+..|.+.++++
T Consensus       322 ~L~L~~N~i-~-------~~~~~~~~~L~~L~l~~N~~  351 (390)
T 3o6n_A          322 NLYLDHNSI-V-------TLKLSTHHTLKNLTLSHNDW  351 (390)
T ss_dssp             EEECCSSCC-C-------CCCCCTTCCCSEEECCSSCE
T ss_pred             EEECCCCcc-c-------eeCchhhccCCEEEcCCCCc
Confidence            555554431 1       01123445556666665544

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=98.93  E-value=1.7e-09  Score=82.92  Aligned_cols=84  Identities=19%  Similarity=0.172  Sum_probs=41.8

Q ss_pred             CCccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCc-cccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCCc
Q 048450            2 PRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLE-ELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTL   80 (133)
Q Consensus         2 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~-~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L   80 (133)
                      ++|++|++++|......|..++.+++|+.|+++++.... .+|.    .++.+++|++|++++|......|..+..+++|
T Consensus       424 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  499 (606)
T 3vq2_A          424 EKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSN----VFANTTNLTFLDLSKCQLEQISWGVFDTLHRL  499 (606)
T ss_dssp             TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECS----CCTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred             ccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHH----hhccCCCCCEEECCCCcCCccChhhhcccccC
Confidence            445555555543333334444555555555555543222 1344    45555666666665544333334445555566


Q ss_pred             cEEEEecCc
Q 048450           81 QELTIHRCP   89 (133)
Q Consensus        81 ~~L~i~~c~   89 (133)
                      ++|++++|.
T Consensus       500 ~~L~Ls~N~  508 (606)
T 3vq2_A          500 QLLNMSHNN  508 (606)
T ss_dssp             CEEECCSSC
T ss_pred             CEEECCCCc
Confidence            666665553

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=98.92  E-value=4.2e-09  Score=76.04  Aligned_cols=83  Identities=20%  Similarity=0.192  Sum_probs=51.2

Q ss_pred             CCCccEEeecCCCCCccCC-ccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCc--CCCCC
Q 048450            1 MPRLSSLTVGSCNKLKALP-DYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPD--YLLQT   77 (133)
Q Consensus         1 l~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~--~~~~l   77 (133)
                      +++|++|+++++ .+..++ ..+..+++|++|+++++. +..+|..   .++.+++|++|+++++ .++.+|.  .+..+
T Consensus        75 l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~---~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l  148 (353)
T 2z80_A           75 CVNLQALVLTSN-GINTIEEDSFSSLGSLEHLDLSYNY-LSNLSSS---WFKPLSSLTFLNLLGN-PYKTLGETSLFSHL  148 (353)
T ss_dssp             CTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC-CSSCCHH---HHTTCTTCSEEECTTC-CCSSSCSSCSCTTC
T ss_pred             CCCCCEEECCCC-ccCccCHhhcCCCCCCCEEECCCCc-CCcCCHh---HhCCCccCCEEECCCC-CCcccCchhhhccC
Confidence            356777777775 454443 446677777777777653 5556551   2566667777777663 3555654  45566


Q ss_pred             CCccEEEEecCc
Q 048450           78 TTLQELTIHRCP   89 (133)
Q Consensus        78 ~~L~~L~i~~c~   89 (133)
                      ++|++|+++++.
T Consensus       149 ~~L~~L~l~~n~  160 (353)
T 2z80_A          149 TKLQILRVGNMD  160 (353)
T ss_dssp             TTCCEEEEEESS
T ss_pred             CCCcEEECCCCc
Confidence            667777766653

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.92  E-value=2.1e-09  Score=69.89  Aligned_cols=81  Identities=22%  Similarity=0.329  Sum_probs=67.4

Q ss_pred             CCCccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCcc-ccccccccCCCCCCccEEeecCCCCCCccC--cCCCCC
Q 048450            1 MPRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEE-LPILEDRRTTDIPRLTSLWISDCPNLKVLP--DYLLQT   77 (133)
Q Consensus         1 l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~-lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp--~~~~~l   77 (133)
                      +++|++|++++|. +..+ ..+..+++|+.|+++++. +.. +|.    .++.+++|++|+++++ .++.+|  ..+..+
T Consensus        48 l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~N~-l~~~~~~----~~~~l~~L~~L~Ls~N-~l~~~~~~~~l~~l  119 (168)
T 2ell_A           48 FVNLEFLSLINVG-LISV-SNLPKLPKLKKLELSENR-IFGGLDM----LAEKLPNLTHLNLSGN-KLKDISTLEPLKKL  119 (168)
T ss_dssp             GGGCCEEEEESSC-CCCC-SSCCCCSSCCEEEEESCC-CCSCCCH----HHHHCTTCCEEECBSS-SCCSSGGGGGGSSC
T ss_pred             CCCCCEEeCcCCC-CCCh-hhhccCCCCCEEECcCCc-CchHHHH----HHhhCCCCCEEeccCC-ccCcchhHHHHhcC
Confidence            4689999999974 7667 678899999999999976 555 666    5666999999999986 577776  678889


Q ss_pred             CCccEEEEecCc
Q 048450           78 TTLQELTIHRCP   89 (133)
Q Consensus        78 ~~L~~L~i~~c~   89 (133)
                      ++|+.|++++++
T Consensus       120 ~~L~~L~l~~N~  131 (168)
T 2ell_A          120 ECLKSLDLFNCE  131 (168)
T ss_dssp             SCCCEEECCSSG
T ss_pred             CCCCEEEeeCCc
Confidence            999999999986

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=98.92  E-value=1.1e-08  Score=71.61  Aligned_cols=83  Identities=24%  Similarity=0.369  Sum_probs=51.1

Q ss_pred             CCCccEEeecCCCCCccC-CccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcC-CCCCC
Q 048450            1 MPRLSSLTVGSCNKLKAL-PDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDY-LLQTT   78 (133)
Q Consensus         1 l~~L~~L~l~~~~~l~~l-p~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~l~   78 (133)
                      +++|++|+++++..+..+ |..+..+++|+.|+++++. +..++..   .++.+++|++|+++++. ++.+|.. +..++
T Consensus        79 l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~---~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~  153 (285)
T 1ozn_A           79 LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG-LQELGPG---LFRGLAALQYLYLQDNA-LQALPDDTFRDLG  153 (285)
T ss_dssp             CTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTT---TTTTCTTCCEEECCSSC-CCCCCTTTTTTCT
T ss_pred             ccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCc-CCEECHh---HhhCCcCCCEEECCCCc-ccccCHhHhccCC
Confidence            356788888876556666 3556677777777777754 4444321   55666667777766643 4444432 55566


Q ss_pred             CccEEEEecC
Q 048450           79 TLQELTIHRC   88 (133)
Q Consensus        79 ~L~~L~i~~c   88 (133)
                      +|++|+++++
T Consensus       154 ~L~~L~l~~n  163 (285)
T 1ozn_A          154 NLTHLFLHGN  163 (285)
T ss_dssp             TCCEEECCSS
T ss_pred             CccEEECCCC
Confidence            6666666655

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=98.92  E-value=7.7e-10  Score=78.97  Aligned_cols=82  Identities=26%  Similarity=0.356  Sum_probs=37.1

Q ss_pred             CccEEeecCCCCCc--cCCccCCCCCCccEEEecc-CCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCC
Q 048450            3 RLSSLTVGSCNKLK--ALPDYLLQTTALQELSICS-CDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTT   79 (133)
Q Consensus         3 ~L~~L~l~~~~~l~--~lp~~~~~l~~L~~L~l~~-c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~   79 (133)
                      ++++|+++++..-+  .+|..++.+++|++|++++ +.....+|.    .++.+++|++|+++++...+.+|..+..+++
T Consensus        51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~----~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~  126 (313)
T 1ogq_A           51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPP----AIAKLTQLHYLYITHTNVSGAIPDFLSQIKT  126 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCG----GGGGCTTCSEEEEEEECCEEECCGGGGGCTT
T ss_pred             eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCCh----hHhcCCCCCEEECcCCeeCCcCCHHHhCCCC
Confidence            34555555543222  4454555555555555553 222223444    4444555555555443322244444444444


Q ss_pred             ccEEEEecC
Q 048450           80 LQELTIHRC   88 (133)
Q Consensus        80 L~~L~i~~c   88 (133)
                      |++|+++++
T Consensus       127 L~~L~Ls~N  135 (313)
T 1ogq_A          127 LVTLDFSYN  135 (313)
T ss_dssp             CCEEECCSS
T ss_pred             CCEEeCCCC
Confidence            444444443

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.92  E-value=1.5e-08  Score=69.28  Aligned_cols=104  Identities=22%  Similarity=0.281  Sum_probs=78.4

Q ss_pred             CCccEEeecCCCCCccC-CccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcC-CCCCCC
Q 048450            2 PRLSSLTVGSCNKLKAL-PDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDY-LLQTTT   79 (133)
Q Consensus         2 ~~L~~L~l~~~~~l~~l-p~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~l~~   79 (133)
                      ++|++|+++++ .+..+ |..+..+++|+.|+++++. ++.+|..   .++.+++|++|+++++ .++.+|.. +..+++
T Consensus        40 ~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~---~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~  113 (229)
T 3e6j_A           40 TNAQILYLHDN-QITKLEPGVFDSLINLKELYLGSNQ-LGALPVG---VFDSLTQLTVLDLGTN-QLTVLPSAVFDRLVH  113 (229)
T ss_dssp             TTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTT---TTTTCTTCCEEECCSS-CCCCCCTTTTTTCTT
T ss_pred             CCCCEEEcCCC-ccCccCHHHhhCccCCcEEECCCCC-CCCcChh---hcccCCCcCEEECCCC-cCCccChhHhCcchh
Confidence            57899999996 45555 5667899999999999965 7888763   5688999999999985 57777765 578999


Q ss_pred             ccEEEEecCchhHHhhcCCCCCCCcccCCCCceEEcCc
Q 048450           80 LQELTIHRCPLLENRYREGKGEDWHKISHIPHIKWSIT  117 (133)
Q Consensus        80 L~~L~i~~c~~l~~~~~~~~~~~~~~i~~l~~l~~~~~  117 (133)
                      |+.|+++++. +.     ..+..+..+.++..|.+.++
T Consensus       114 L~~L~Ls~N~-l~-----~lp~~~~~l~~L~~L~L~~N  145 (229)
T 3e6j_A          114 LKELFMCCNK-LT-----ELPRGIERLTHLTHLALDQN  145 (229)
T ss_dssp             CCEEECCSSC-CC-----SCCTTGGGCTTCSEEECCSS
T ss_pred             hCeEeccCCc-cc-----ccCcccccCCCCCEEECCCC
Confidence            9999999875 22     12333456667777776653

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=98.92  E-value=1.6e-08  Score=70.64  Aligned_cols=82  Identities=27%  Similarity=0.321  Sum_probs=39.3

Q ss_pred             CCccEEeecCCCCCccCCcc-CCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcC-CCCCCC
Q 048450            2 PRLSSLTVGSCNKLKALPDY-LLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDY-LLQTTT   79 (133)
Q Consensus         2 ~~L~~L~l~~~~~l~~lp~~-~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~l~~   79 (133)
                      ++|++|+++++ .+..++.. ++.+++|+.|+++++. +..++..   .++.+++|++|+++++. +..+|.. +..+++
T Consensus       109 ~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~---~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~  182 (272)
T 3rfs_A          109 TNLKELVLVEN-QLQSLPDGVFDKLTNLTYLNLAHNQ-LQSLPKG---VFDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQ  182 (272)
T ss_dssp             TTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTT---TTTTCTTCCEEECCSSC-CCCCCTTTTTTCTT
T ss_pred             cCCCEEECCCC-cCCccCHHHhccCCCCCEEECCCCc-cCccCHH---HhccCccCCEEECCCCC-cCccCHHHhcCCcc
Confidence            44555555554 33334322 3455555555555542 4444431   23455555555555533 3344332 344555


Q ss_pred             ccEEEEecCc
Q 048450           80 LQELTIHRCP   89 (133)
Q Consensus        80 L~~L~i~~c~   89 (133)
                      |++|+++++.
T Consensus       183 L~~L~L~~N~  192 (272)
T 3rfs_A          183 LKDLRLYQNQ  192 (272)
T ss_dssp             CCEEECCSSC
T ss_pred             CCEEECCCCc
Confidence            5555555543

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.91  E-value=1.1e-09  Score=86.52  Aligned_cols=82  Identities=22%  Similarity=0.248  Sum_probs=74.0

Q ss_pred             CCCccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCCc
Q 048450            1 MPRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTL   80 (133)
Q Consensus         1 l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L   80 (133)
                      +++|++|+|+++ .+..+|..++.+++|+.|+++++. +..+|.    .++.+++|++|+++++ .++.+|..+..+++|
T Consensus       246 l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~----~~~~l~~L~~L~L~~N-~l~~lp~~~~~l~~L  318 (727)
T 4b8c_D          246 YDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHNR-LTSLPA----ELGSCFQLKYFYFFDN-MVTTLPWEFGNLCNL  318 (727)
T ss_dssp             CCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTSC-CSSCCS----SGGGGTTCSEEECCSS-CCCCCCSSTTSCTTC
T ss_pred             CCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCCc-CCccCh----hhcCCCCCCEEECCCC-CCCccChhhhcCCCc
Confidence            478999999996 677999889999999999999975 779998    8999999999999985 588999999999999


Q ss_pred             cEEEEecCc
Q 048450           81 QELTIHRCP   89 (133)
Q Consensus        81 ~~L~i~~c~   89 (133)
                      +.|+++++.
T Consensus       319 ~~L~L~~N~  327 (727)
T 4b8c_D          319 QFLGVEGNP  327 (727)
T ss_dssp             CCEECTTSC
T ss_pred             cEEeCCCCc
Confidence            999999885

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=98.91  E-value=8.7e-09  Score=76.76  Aligned_cols=114  Identities=18%  Similarity=0.383  Sum_probs=57.1

Q ss_pred             CCCccEEeecCCCCCccCCc-cCCCCCCccEEEeccCCCCccccccc-------------------cccCCCCCCccEEe
Q 048450            1 MPRLSSLTVGSCNKLKALPD-YLLQTTALQELSICSCDLLEELPILE-------------------DRRTTDIPRLTSLW   60 (133)
Q Consensus         1 l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~c~~l~~lp~~~-------------------~~~~~~l~~L~~L~   60 (133)
                      +++|++|++++|..++.++. .+..+++|+.|+++++. +..+|.-.                   ...+..+++|+.|+
T Consensus       170 l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  248 (452)
T 3zyi_A          170 VPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN-IKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLW  248 (452)
T ss_dssp             CTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC-CSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEE
T ss_pred             CCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc-ccccccccccccccEEECcCCcCcccCcccccCccCCCEEE
Confidence            35677777777666666663 34566666666666643 44444200                   00334444444444


Q ss_pred             ecCCCCCCcc-CcCCCCCCCccEEEEecCchhHHhhcCCCCCCCcccCCCCceEEcCcccee
Q 048450           61 ISDCPNLKVL-PDYLLQTTTLQELTIHRCPLLENRYREGKGEDWHKISHIPHIKWSITRWCC  121 (133)
Q Consensus        61 l~~c~~l~~l-p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~  121 (133)
                      ++++. +..+ |..+..+++|+.|+++++. +.    ......+..+.++..+.+.++++.+
T Consensus       249 L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~-l~----~~~~~~~~~l~~L~~L~L~~Np~~C  304 (452)
T 3zyi_A          249 VMNSQ-VSLIERNAFDGLASLVELNLAHNN-LS----SLPHDLFTPLRYLVELHLHHNPWNC  304 (452)
T ss_dssp             CTTSC-CCEECTTTTTTCTTCCEEECCSSC-CS----CCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred             eCCCc-CceECHHHhcCCCCCCEEECCCCc-CC----ccChHHhccccCCCEEEccCCCcCC
Confidence            44432 2222 3334445555555555543 11    0111223455666777777766643

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=98.90  E-value=1.8e-08  Score=70.22  Aligned_cols=32  Identities=25%  Similarity=0.350  Sum_probs=13.3

Q ss_pred             CccEEeecCCCCCccCCcc-CCCCCCccEEEecc
Q 048450            3 RLSSLTVGSCNKLKALPDY-LLQTTALQELSICS   35 (133)
Q Consensus         3 ~L~~L~l~~~~~l~~lp~~-~~~l~~L~~L~l~~   35 (133)
                      +|++|+++++ .+..+|.. +..+++|++|++++
T Consensus        62 ~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~   94 (270)
T 2o6q_A           62 KLRLLYLNDN-KLQTLPAGIFKELKNLETLWVTD   94 (270)
T ss_dssp             TCCEEECCSS-CCSCCCTTTTSSCTTCCEEECCS
T ss_pred             CCCEEECCCC-ccCeeChhhhcCCCCCCEEECCC
Confidence            4444444442 33333322 23444444444444

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.89  E-value=2.7e-09  Score=82.18  Aligned_cols=104  Identities=18%  Similarity=0.200  Sum_probs=54.8

Q ss_pred             CCccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCCcc
Q 048450            2 PRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTLQ   81 (133)
Q Consensus         2 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~   81 (133)
                      ++|++|+++++......|..++.+++|+.|+++++. +..+|.    .++.+++|+.|++++|. +..+|..+..+++|+
T Consensus       254 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~----~~~~l~~L~~L~Ls~N~-l~~i~~~~~~l~~L~  327 (597)
T 3oja_B          254 PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNL----YGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLE  327 (597)
T ss_dssp             TTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSC-CCEEEC----SSSCCTTCCEEECCSSC-CCCCGGGHHHHTTCS
T ss_pred             CCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCC-CCCCCc----ccccCCCCcEEECCCCC-CCccCcccccCCCCC
Confidence            455555555543222234455556666666666543 555555    45556666666666543 445555555555666


Q ss_pred             EEEEecCchhHHhhcCCCCCCCcccCCCCceEEcCccc
Q 048450           82 ELTIHRCPLLENRYREGKGEDWHKISHIPHIKWSITRW  119 (133)
Q Consensus        82 ~L~i~~c~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~  119 (133)
                      .|++++|.. .       +.....+..+..|.+.++++
T Consensus       328 ~L~L~~N~l-~-------~~~~~~~~~L~~L~l~~N~~  357 (597)
T 3oja_B          328 NLYLDHNSI-V-------TLKLSTHHTLKNLTLSHNDW  357 (597)
T ss_dssp             EEECCSSCC-C-------CCCCCTTCCCSEEECCSSCE
T ss_pred             EEECCCCCC-C-------CcChhhcCCCCEEEeeCCCC
Confidence            666665541 1       11233455666666666554

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=98.89  E-value=8.9e-09  Score=76.46  Aligned_cols=83  Identities=19%  Similarity=0.320  Sum_probs=70.1

Q ss_pred             CCCccEEeecCCCCCccCCc-cCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCC
Q 048450            1 MPRLSSLTVGSCNKLKALPD-YLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTT   79 (133)
Q Consensus         1 l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~   79 (133)
                      +++|++|+++++ .+..+|. .+..+++|+.|++.++..+..++..   .+..+++|++|+++++ .++.+|. +..+++
T Consensus       135 l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~---~~~~l~~L~~L~L~~n-~l~~~~~-~~~l~~  208 (440)
T 3zyj_A          135 LSKLKELWLRNN-PIESIPSYAFNRIPSLRRLDLGELKRLSYISEG---AFEGLSNLRYLNLAMC-NLREIPN-LTPLIK  208 (440)
T ss_dssp             CSSCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEECTT---TTTTCSSCCEEECTTS-CCSSCCC-CTTCSS
T ss_pred             cccCceeeCCCC-cccccCHHHhhhCcccCEeCCCCCCCcceeCcc---hhhcccccCeecCCCC-cCccccc-cCCCcc
Confidence            478999999996 5777774 6789999999999999889988874   6888999999999985 5778874 677889


Q ss_pred             ccEEEEecCc
Q 048450           80 LQELTIHRCP   89 (133)
Q Consensus        80 L~~L~i~~c~   89 (133)
                      |+.|+++++.
T Consensus       209 L~~L~Ls~N~  218 (440)
T 3zyj_A          209 LDELDLSGNH  218 (440)
T ss_dssp             CCEEECTTSC
T ss_pred             cCEEECCCCc
Confidence            9999998874

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.89  E-value=1.5e-08  Score=67.64  Aligned_cols=83  Identities=18%  Similarity=0.274  Sum_probs=69.0

Q ss_pred             CCCccEEeecCCCCCccCC-ccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcC-CCCCC
Q 048450            1 MPRLSSLTVGSCNKLKALP-DYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDY-LLQTT   78 (133)
Q Consensus         1 l~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~l~   78 (133)
                      +++|++|+++++ .+..++ ..+..+++|+.|+++++. +..++..   .+..+++|++|++++ +.+..+|.. +..++
T Consensus        53 l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~-l~~i~~~---~f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~  126 (193)
T 2wfh_A           53 YKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSYNR-LRCIPPR---TFDGLKSLRLLSLHG-NDISVVPEGAFNDLS  126 (193)
T ss_dssp             CTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTT---TTTTCTTCCEEECCS-SCCCBCCTTTTTTCT
T ss_pred             ccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCCCc-cCEeCHH---HhCCCCCCCEEECCC-CCCCeeChhhhhcCc
Confidence            468999999995 677776 457899999999999965 7777763   688999999999998 457788864 67899


Q ss_pred             CccEEEEecCc
Q 048450           79 TLQELTIHRCP   89 (133)
Q Consensus        79 ~L~~L~i~~c~   89 (133)
                      +|+.|++++++
T Consensus       127 ~L~~L~L~~N~  137 (193)
T 2wfh_A          127 ALSHLAIGANP  137 (193)
T ss_dssp             TCCEEECCSSC
T ss_pred             cccEEEeCCCC
Confidence            99999999765

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=98.88  E-value=1.9e-09  Score=83.75  Aligned_cols=84  Identities=17%  Similarity=0.260  Sum_probs=65.7

Q ss_pred             CCCccEEeecCCCCCcc------------------CCccCC--CCCCccEEEeccCCCCccccccccccCCCCCCccEEe
Q 048450            1 MPRLSSLTVGSCNKLKA------------------LPDYLL--QTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLW   60 (133)
Q Consensus         1 l~~L~~L~l~~~~~l~~------------------lp~~~~--~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~   60 (133)
                      +++|++|+++++. +..                  +|..++  ++++|++|++++|...+.+|.    .++.+++|++|+
T Consensus       205 l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~----~l~~l~~L~~L~  279 (636)
T 4eco_A          205 LTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPT----FLKALPEMQLIN  279 (636)
T ss_dssp             CTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCT----TTTTCSSCCEEE
T ss_pred             ccCCCEEECcCCc-cccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChH----HHhcCCCCCEEE
Confidence            4688999999875 555                  888888  899999999998877788887    788888999999


Q ss_pred             ecCCCCCC--ccCcCCCCC------CCccEEEEecCc
Q 048450           61 ISDCPNLK--VLPDYLLQT------TTLQELTIHRCP   89 (133)
Q Consensus        61 l~~c~~l~--~lp~~~~~l------~~L~~L~i~~c~   89 (133)
                      ++++..+.  .+|..+..+      ++|++|+++++.
T Consensus       280 Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~  316 (636)
T 4eco_A          280 VACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN  316 (636)
T ss_dssp             CTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC
T ss_pred             CcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc
Confidence            88876354  477666554      677888777764

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=98.88  E-value=1.6e-08  Score=75.60  Aligned_cols=82  Identities=23%  Similarity=0.265  Sum_probs=34.1

Q ss_pred             CCccEEeecCCCCCccC-CccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCCc
Q 048450            2 PRLSSLTVGSCNKLKAL-PDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTL   80 (133)
Q Consensus         2 ~~L~~L~l~~~~~l~~l-p~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L   80 (133)
                      ++|++|+++++ .+..+ |..+.++++|++|+++++. +..+|..   .++.+++|++|+++++......|..+..+++|
T Consensus        56 ~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~---~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L  130 (477)
T 2id5_A           56 PHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLG---VFTGLSNLTKLDISENKIVILLDYMFQDLYNL  130 (477)
T ss_dssp             TTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC-CCSCCTT---SSTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred             CCCCEEECCCC-ccCEeChhhhhCCccCCEEECCCCc-CCccCcc---cccCCCCCCEEECCCCccccCChhHccccccC
Confidence            34444444443 22222 3334444555555554432 4444431   23444455555554433222223334444444


Q ss_pred             cEEEEecC
Q 048450           81 QELTIHRC   88 (133)
Q Consensus        81 ~~L~i~~c   88 (133)
                      ++|+++++
T Consensus       131 ~~L~l~~n  138 (477)
T 2id5_A          131 KSLEVGDN  138 (477)
T ss_dssp             CEEEECCT
T ss_pred             CEEECCCC
Confidence            44444443

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.88  E-value=3.9e-09  Score=67.32  Aligned_cols=105  Identities=14%  Similarity=0.122  Sum_probs=76.3

Q ss_pred             CCccEEeecCCCCCc--cCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCC
Q 048450            2 PRLSSLTVGSCNKLK--ALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTT   79 (133)
Q Consensus         2 ~~L~~L~l~~~~~l~--~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~   79 (133)
                      ++|++|+++++. +.  .+|..+..+++|+.|++++|. +..+ .    .++.+++|++|+++++.....+|..+..+++
T Consensus        17 ~~l~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~-~----~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~   89 (149)
T 2je0_A           17 SDVKELVLDNSR-SNEGKLEGLTDEFEELEFLSTINVG-LTSI-A----NLPKLNKLKKLELSDNRVSGGLEVLAEKCPN   89 (149)
T ss_dssp             GGCSEEECTTCB-CBTTBCCSCCTTCTTCCEEECTTSC-CCCC-T----TCCCCTTCCEEECCSSCCCSCTHHHHHHCTT
T ss_pred             ccCeEEEccCCc-CChhHHHHHHhhcCCCcEEECcCCC-CCCc-h----hhhcCCCCCEEECCCCcccchHHHHhhhCCC
Confidence            578999999974 55  788878899999999999974 7776 4    6888999999999986643337766667889


Q ss_pred             ccEEEEecCchhHHhhcCCCCCCCcccCCCCceEEcCc
Q 048450           80 LQELTIHRCPLLENRYREGKGEDWHKISHIPHIKWSIT  117 (133)
Q Consensus        80 L~~L~i~~c~~l~~~~~~~~~~~~~~i~~l~~l~~~~~  117 (133)
                      |++|+++++. +....   ....+..+.++..+.+.++
T Consensus        90 L~~L~ls~N~-i~~~~---~~~~~~~l~~L~~L~l~~N  123 (149)
T 2je0_A           90 LTHLNLSGNK-IKDLS---TIEPLKKLENLKSLDLFNC  123 (149)
T ss_dssp             CCEEECTTSC-CCSHH---HHGGGGGCTTCCEEECTTC
T ss_pred             CCEEECCCCc-CCChH---HHHHHhhCCCCCEEeCcCC
Confidence            9999999876 22110   0022345566666666654

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=98.88  E-value=8.2e-09  Score=78.91  Aligned_cols=80  Identities=16%  Similarity=0.222  Sum_probs=47.0

Q ss_pred             CccEEeecCCCCCccCC-ccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcC-CCCCCCc
Q 048450            3 RLSSLTVGSCNKLKALP-DYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDY-LLQTTTL   80 (133)
Q Consensus         3 ~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~l~~L   80 (133)
                      ++++|+++++ .+..+| ..+.++++|++|++++|. ++.++.+   .++.+++|++|+++++ .++.+|.. +.++++|
T Consensus        53 ~~~~LdLs~N-~i~~l~~~~f~~l~~L~~L~Ls~N~-i~~i~~~---~f~~L~~L~~L~Ls~N-~l~~l~~~~f~~L~~L  126 (635)
T 4g8a_A           53 STKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDG---AYQSLSHLSTLILTGN-PIQSLALGAFSGLSSL  126 (635)
T ss_dssp             TCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTCC-CCEECTT---TTTTCTTCCEEECTTC-CCCEECGGGGTTCTTC
T ss_pred             CCCEEEeeCC-CCCCCCHHHHhCCCCCCEEECCCCc-CCCcChh---HhcCCCCCCEEEccCC-cCCCCCHHHhcCCCCC
Confidence            4666666663 555665 345666666666666653 5555542   4556666666666663 35555532 4556666


Q ss_pred             cEEEEecC
Q 048450           81 QELTIHRC   88 (133)
Q Consensus        81 ~~L~i~~c   88 (133)
                      ++|+++++
T Consensus       127 ~~L~Ls~N  134 (635)
T 4g8a_A          127 QKLVAVET  134 (635)
T ss_dssp             CEEECTTS
T ss_pred             CEEECCCC
Confidence            66666655

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=98.88  E-value=3.4e-08  Score=66.20  Aligned_cols=105  Identities=23%  Similarity=0.297  Sum_probs=77.3

Q ss_pred             CCccEEeecCCCCCccCCcc-CCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcC-CCCCCC
Q 048450            2 PRLSSLTVGSCNKLKALPDY-LLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDY-LLQTTT   79 (133)
Q Consensus         2 ~~L~~L~l~~~~~l~~lp~~-~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~l~~   79 (133)
                      ++|++|+++++ .+..++.. ++.+++|+.|+++++ .++.++..   .++.+++|++|+++++. +..+|.. +..+++
T Consensus        28 ~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~---~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~  101 (208)
T 2o6s_A           28 AQTTYLDLETN-SLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNG---VFNKLTSLTYLNLSTNQ-LQSLPNGVFDKLTQ  101 (208)
T ss_dssp             TTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTT---TTTTCTTCCEEECCSSC-CCCCCTTTTTTCTT
T ss_pred             CCCcEEEcCCC-ccCcCChhhhcccccCcEEECCCC-ccCccChh---hcCCCCCcCEEECCCCc-CCccCHhHhcCccC
Confidence            47899999996 66677754 688999999999996 47777763   46789999999999854 6677754 578999


Q ss_pred             ccEEEEecCchhHHhhcCCCCCCCcccCCCCceEEcCc
Q 048450           80 LQELTIHRCPLLENRYREGKGEDWHKISHIPHIKWSIT  117 (133)
Q Consensus        80 L~~L~i~~c~~l~~~~~~~~~~~~~~i~~l~~l~~~~~  117 (133)
                      |++|+++++. +..    .....+..+.++..|.+.++
T Consensus       102 L~~L~L~~N~-l~~----~~~~~~~~l~~L~~L~l~~N  134 (208)
T 2o6s_A          102 LKELALNTNQ-LQS----LPDGVFDKLTQLKDLRLYQN  134 (208)
T ss_dssp             CCEEECCSSC-CCC----CCTTTTTTCTTCCEEECCSS
T ss_pred             CCEEEcCCCc-Ccc----cCHhHhccCCcCCEEECCCC
Confidence            9999999875 221    11222455666777766653

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=98.88  E-value=6.7e-09  Score=77.39  Aligned_cols=83  Identities=20%  Similarity=0.284  Sum_probs=66.2

Q ss_pred             CCCccEEeecCCCCCccCCc-cCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCC
Q 048450            1 MPRLSSLTVGSCNKLKALPD-YLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTT   79 (133)
Q Consensus         1 l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~   79 (133)
                      +++|++|+++++ .+..+|. .+..+++|+.|++.+|..++.++..   .+..+++|++|+++++ .+..+| .+..+++
T Consensus       146 l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~---~~~~l~~L~~L~L~~n-~l~~~~-~~~~l~~  219 (452)
T 3zyi_A          146 LSKLRELWLRNN-PIESIPSYAFNRVPSLMRLDLGELKKLEYISEG---AFEGLFNLKYLNLGMC-NIKDMP-NLTPLVG  219 (452)
T ss_dssp             CTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEECTT---TTTTCTTCCEEECTTS-CCSSCC-CCTTCTT
T ss_pred             cCCCCEEECCCC-CcceeCHhHHhcCCcccEEeCCCCCCccccChh---hccCCCCCCEEECCCC-cccccc-ccccccc
Confidence            478999999996 6777774 5789999999999999989998874   5778888999988875 466666 3566777


Q ss_pred             ccEEEEecCc
Q 048450           80 LQELTIHRCP   89 (133)
Q Consensus        80 L~~L~i~~c~   89 (133)
                      |+.|+++++.
T Consensus       220 L~~L~Ls~N~  229 (452)
T 3zyi_A          220 LEELEMSGNH  229 (452)
T ss_dssp             CCEEECTTSC
T ss_pred             ccEEECcCCc
Confidence            8888877764

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=98.87  E-value=3.7e-09  Score=75.44  Aligned_cols=108  Identities=19%  Similarity=0.213  Sum_probs=82.1

Q ss_pred             CCCccEEeecC-CCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCC
Q 048450            1 MPRLSSLTVGS-CNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTT   79 (133)
Q Consensus         1 l~~L~~L~l~~-~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~   79 (133)
                      +++|++|++++ +.....+|..++.+++|++|+++++.-.+.+|.    .++.+++|++|+++++.....+|..+..+++
T Consensus        75 l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~----~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  150 (313)
T 1ogq_A           75 LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPD----FLSQIKTLVTLDFSYNALSGTLPPSISSLPN  150 (313)
T ss_dssp             CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCG----GGGGCTTCCEEECCSSEEESCCCGGGGGCTT
T ss_pred             CCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCH----HHhCCCCCCEEeCCCCccCCcCChHHhcCCC
Confidence            47899999995 444457888899999999999999764447887    7899999999999997655578888999999


Q ss_pred             ccEEEEecCchhHHhhcCCCCCCCcccC-CCCceEEcCc
Q 048450           80 LQELTIHRCPLLENRYREGKGEDWHKIS-HIPHIKWSIT  117 (133)
Q Consensus        80 L~~L~i~~c~~l~~~~~~~~~~~~~~i~-~l~~l~~~~~  117 (133)
                      |++|+++++..-.     ..+..+..+. .+..+.+.++
T Consensus       151 L~~L~L~~N~l~~-----~~p~~l~~l~~~L~~L~L~~N  184 (313)
T 1ogq_A          151 LVGITFDGNRISG-----AIPDSYGSFSKLFTSMTISRN  184 (313)
T ss_dssp             CCEEECCSSCCEE-----ECCGGGGCCCTTCCEEECCSS
T ss_pred             CCeEECcCCcccC-----cCCHHHhhhhhcCcEEECcCC
Confidence            9999999876221     1122233444 6666766654

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=98.86  E-value=7.5e-09  Score=73.20  Aligned_cols=82  Identities=24%  Similarity=0.290  Sum_probs=36.6

Q ss_pred             CCccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCc-cccccccccCCCCCCccEEeecCCCCCCcc-CcCCCCCCC
Q 048450            2 PRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLE-ELPILEDRRTTDIPRLTSLWISDCPNLKVL-PDYLLQTTT   79 (133)
Q Consensus         2 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~-~lp~~~~~~~~~l~~L~~L~l~~c~~l~~l-p~~~~~l~~   79 (133)
                      ++|++|+++++......+..+..+++|+.|+++++.... .+|.    .++.+++|++|+++++. +..+ |..+..+++
T Consensus       126 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~  200 (306)
T 2z66_A          126 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD----IFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSS  200 (306)
T ss_dssp             TTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECS----CCTTCTTCCEEECTTSC-CCEECTTTTTTCTT
T ss_pred             cCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchh----HHhhCcCCCEEECCCCC-cCCcCHHHhcCCCC
Confidence            344445544432222222334444555555555433111 1343    45555555555555543 3333 344445555


Q ss_pred             ccEEEEecC
Q 048450           80 LQELTIHRC   88 (133)
Q Consensus        80 L~~L~i~~c   88 (133)
                      |++|+++++
T Consensus       201 L~~L~L~~N  209 (306)
T 2z66_A          201 LQVLNMSHN  209 (306)
T ss_dssp             CCEEECTTS
T ss_pred             CCEEECCCC
Confidence            555555554

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=98.86  E-value=9.1e-09  Score=76.27  Aligned_cols=105  Identities=10%  Similarity=0.138  Sum_probs=76.7

Q ss_pred             CCccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCcc-CcCCCCCCCc
Q 048450            2 PRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVL-PDYLLQTTTL   80 (133)
Q Consensus         2 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~l-p~~~~~l~~L   80 (133)
                      ++|++|+++++......|..++.+++|+.|+++++. +..++..   .++.+++|++|+++++. ++.+ |..+..+++|
T Consensus       275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~---~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L  349 (455)
T 3v47_A          275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNE-INKIDDN---AFWGLTHLLKLNLSQNF-LGSIDSRMFENLDKL  349 (455)
T ss_dssp             SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSC-CCEECTT---TTTTCTTCCEEECCSSC-CCEECGGGGTTCTTC
T ss_pred             cCceEEEecCccccccchhhcccCCCCCEEECCCCc-ccccChh---HhcCcccCCEEECCCCc-cCCcChhHhcCcccC
Confidence            468888888875555556778899999999999976 5555432   78889999999999865 5555 5667889999


Q ss_pred             cEEEEecCchhHHhhcCCCCCCCcccCCCCceEEcC
Q 048450           81 QELTIHRCPLLENRYREGKGEDWHKISHIPHIKWSI  116 (133)
Q Consensus        81 ~~L~i~~c~~l~~~~~~~~~~~~~~i~~l~~l~~~~  116 (133)
                      ++|+++++.. ..    .....+..+.++..|.+.+
T Consensus       350 ~~L~Ls~N~l-~~----~~~~~~~~l~~L~~L~L~~  380 (455)
T 3v47_A          350 EVLDLSYNHI-RA----LGDQSFLGLPNLKELALDT  380 (455)
T ss_dssp             CEEECCSSCC-CE----ECTTTTTTCTTCCEEECCS
T ss_pred             CEEECCCCcc-cc----cChhhccccccccEEECCC
Confidence            9999998862 21    1223345566777777665

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=98.86  E-value=2.5e-08  Score=72.77  Aligned_cols=83  Identities=18%  Similarity=0.254  Sum_probs=53.9

Q ss_pred             CCCccEEeecCCCCCccCC-ccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCC-CCCC
Q 048450            1 MPRLSSLTVGSCNKLKALP-DYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYL-LQTT   78 (133)
Q Consensus         1 l~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~-~~l~   78 (133)
                      +++|++|+++++ .+..++ ..+..+++|+.|+++++. +..++..   .++.+++|++|+++++ .++.+|..+ ..++
T Consensus        68 l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~---~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~  141 (390)
T 3o6n_A           68 FRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPH---VFQNVPLLTVLVLERN-DLSSLPRGIFHNTP  141 (390)
T ss_dssp             CCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC-CCCCCTT---TTTTCTTCCEEECCSS-CCCCCCTTTTTTCT
T ss_pred             cccCcEEECCCC-cccccChhhccCCCCcCEEECCCCC-CCcCCHH---HhcCCCCCCEEECCCC-ccCcCCHHHhcCCC
Confidence            356777777775 455555 356677777777777754 5555442   4667777777777764 466666553 5677


Q ss_pred             CccEEEEecCc
Q 048450           79 TLQELTIHRCP   89 (133)
Q Consensus        79 ~L~~L~i~~c~   89 (133)
                      +|++|+++++.
T Consensus       142 ~L~~L~L~~n~  152 (390)
T 3o6n_A          142 KLTTLSMSNNN  152 (390)
T ss_dssp             TCCEEECCSSC
T ss_pred             CCcEEECCCCc
Confidence            77777777664

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=98.86  E-value=5.7e-09  Score=80.01  Aligned_cols=84  Identities=21%  Similarity=0.183  Sum_probs=45.1

Q ss_pred             CCccEEeecCCCCCc-cCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCCc
Q 048450            2 PRLSSLTVGSCNKLK-ALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTL   80 (133)
Q Consensus         2 ~~L~~L~l~~~~~l~-~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L   80 (133)
                      ++|++|+++++.... .+|..++.+++|+.|++++|. +..++..   .++.+++|++|+++++......|..+..+++|
T Consensus       448 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~---~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  523 (606)
T 3vq2_A          448 TSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQ-LEQISWG---VFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSL  523 (606)
T ss_dssp             TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECTT---TTTTCTTCCEEECCSSCCSCEEGGGTTTCTTC
T ss_pred             CCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCc-CCccChh---hhcccccCCEEECCCCcCCCcCHHHccCCCcC
Confidence            456666666653222 145555666666666666654 3333221   45556666666666654333335555555666


Q ss_pred             cEEEEecCc
Q 048450           81 QELTIHRCP   89 (133)
Q Consensus        81 ~~L~i~~c~   89 (133)
                      +.|++++|.
T Consensus       524 ~~L~l~~N~  532 (606)
T 3vq2_A          524 STLDCSFNR  532 (606)
T ss_dssp             CEEECTTSC
T ss_pred             CEEECCCCc
Confidence            666666554

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=98.85  E-value=3e-08  Score=67.37  Aligned_cols=104  Identities=13%  Similarity=0.225  Sum_probs=78.4

Q ss_pred             CCccEEeecCCCCCccCCc-cCCCCCCccEEEeccCCCCccc-cccccccCCCCCCccEEeecCCCCCCccCcC-CCCCC
Q 048450            2 PRLSSLTVGSCNKLKALPD-YLLQTTALQELSICSCDLLEEL-PILEDRRTTDIPRLTSLWISDCPNLKVLPDY-LLQTT   78 (133)
Q Consensus         2 ~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~c~~l~~l-p~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~l~   78 (133)
                      +++++|+++++ .+..++. .+..+++|+.|+++++. +..+ |.    .+..+++|++|+++++ .++.+|.. +..++
T Consensus        32 ~~l~~L~l~~n-~i~~i~~~~~~~l~~L~~L~Ls~N~-i~~~~~~----~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~  104 (220)
T 2v9t_B           32 ETITEIRLEQN-TIKVIPPGAFSPYKKLRRIDLSNNQ-ISELAPD----AFQGLRSLNSLVLYGN-KITELPKSLFEGLF  104 (220)
T ss_dssp             TTCCEEECCSS-CCCEECTTSSTTCTTCCEEECCSSC-CCEECTT----TTTTCSSCCEEECCSS-CCCCCCTTTTTTCT
T ss_pred             cCCCEEECCCC-cCCCcCHhHhhCCCCCCEEECCCCc-CCCcCHH----HhhCCcCCCEEECCCC-cCCccCHhHccCCC
Confidence            46899999985 6777774 67889999999999965 6666 55    7889999999999984 57788876 57799


Q ss_pred             CccEEEEecCchhHHhhcCCCCCCCcccCCCCceEEcCc
Q 048450           79 TLQELTIHRCPLLENRYREGKGEDWHKISHIPHIKWSIT  117 (133)
Q Consensus        79 ~L~~L~i~~c~~l~~~~~~~~~~~~~~i~~l~~l~~~~~  117 (133)
                      +|+.|+++++.- .    ......+..+.++..|.+.++
T Consensus       105 ~L~~L~L~~N~l-~----~~~~~~~~~l~~L~~L~L~~N  138 (220)
T 2v9t_B          105 SLQLLLLNANKI-N----CLRVDAFQDLHNLNLLSLYDN  138 (220)
T ss_dssp             TCCEEECCSSCC-C----CCCTTTTTTCTTCCEEECCSS
T ss_pred             CCCEEECCCCCC-C----EeCHHHcCCCCCCCEEECCCC
Confidence            999999998752 2    122234555667777776653

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=98.85  E-value=1.2e-08  Score=72.19  Aligned_cols=109  Identities=19%  Similarity=0.285  Sum_probs=77.0

Q ss_pred             CCCccEEeecCCCCCc-cCCccCCCCCCccEEEeccCCCCccc-cccccccCCCCCCccEEeecCCCCCCccCc-CCCCC
Q 048450            1 MPRLSSLTVGSCNKLK-ALPDYLLQTTALQELSICSCDLLEEL-PILEDRRTTDIPRLTSLWISDCPNLKVLPD-YLLQT   77 (133)
Q Consensus         1 l~~L~~L~l~~~~~l~-~lp~~~~~l~~L~~L~l~~c~~l~~l-p~~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~l   77 (133)
                      +++|++|+++++.... .+|..+..+++|+.|+++++. +..+ |.    .++.+++|++|+++++. +..++. .+..+
T Consensus       149 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~----~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l  222 (306)
T 2z66_A          149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPT----AFNSLSSLQVLNMSHNN-FFSLDTFPYKCL  222 (306)
T ss_dssp             CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECTT----TTTTCTTCCEEECTTSC-CSBCCSGGGTTC
T ss_pred             CcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCC-cCCcCHH----HhcCCCCCCEEECCCCc-cCccChhhccCc
Confidence            4688999999864333 367778889999999999875 6666 44    78889999999998855 666654 56778


Q ss_pred             CCccEEEEecCchhHHhhcCCCCCCCccc-CCCCceEEcCccce
Q 048450           78 TTLQELTIHRCPLLENRYREGKGEDWHKI-SHIPHIKWSITRWC  120 (133)
Q Consensus        78 ~~L~~L~i~~c~~l~~~~~~~~~~~~~~i-~~l~~l~~~~~~~~  120 (133)
                      ++|+.|+++++.-..     .....+..+ .++..+.+.++.+.
T Consensus       223 ~~L~~L~L~~N~l~~-----~~~~~~~~~~~~L~~L~L~~N~~~  261 (306)
T 2z66_A          223 NSLQVLDYSLNHIMT-----SKKQELQHFPSSLAFLNLTQNDFA  261 (306)
T ss_dssp             TTCCEEECTTSCCCB-----CSSSSCCCCCTTCCEEECTTCCEE
T ss_pred             ccCCEeECCCCCCcc-----cCHHHHHhhhccCCEEEccCCCee
Confidence            899999999875221     122223344 36777777776653

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=98.85  E-value=2e-08  Score=80.17  Aligned_cols=83  Identities=17%  Similarity=0.157  Sum_probs=40.9

Q ss_pred             CCccEEeecCCCCCccC-CccCCCCCCccEEEeccCCCCccc-cccccccCCCCCCccEEeecCCCCCCccCcC--CCCC
Q 048450            2 PRLSSLTVGSCNKLKAL-PDYLLQTTALQELSICSCDLLEEL-PILEDRRTTDIPRLTSLWISDCPNLKVLPDY--LLQT   77 (133)
Q Consensus         2 ~~L~~L~l~~~~~l~~l-p~~~~~l~~L~~L~l~~c~~l~~l-p~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~--~~~l   77 (133)
                      ++|++|+++++.....+ |..++++++|++|+++++. +..+ |.    .++.+++|++|++++|.....+|..  +.++
T Consensus        48 ~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~-l~~~~p~----~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L  122 (844)
T 3j0a_A           48 EQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK-IYFLHPD----AFQGLFHLFELRLYFCGLSDAVLKDGYFRNL  122 (844)
T ss_dssp             CSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC-CCEECTT----SSCSCSSCCCEECTTCCCSSCCSTTCCCSSC
T ss_pred             ccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc-CcccCHh----HccCCcccCEeeCcCCCCCcccccCcccccc
Confidence            34555555554444444 2344555555555555543 3333 33    4555555555555554433333332  4555


Q ss_pred             CCccEEEEecCc
Q 048450           78 TTLQELTIHRCP   89 (133)
Q Consensus        78 ~~L~~L~i~~c~   89 (133)
                      ++|++|+++++.
T Consensus       123 ~~L~~L~Ls~N~  134 (844)
T 3j0a_A          123 KALTRLDLSKNQ  134 (844)
T ss_dssp             SSCCEEEEESCC
T ss_pred             CCCCEEECCCCc
Confidence            566666665543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.84  E-value=6.1e-09  Score=80.16  Aligned_cols=102  Identities=19%  Similarity=0.155  Sum_probs=76.0

Q ss_pred             CccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCCccE
Q 048450            3 RLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTLQE   82 (133)
Q Consensus         3 ~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~   82 (133)
                      .|+.|+++++ .+..+|. ++.+++|+.|+++++. +..+|.    .++.+++|+.|+++++ .++.+| .+..+++|+.
T Consensus       442 ~L~~L~Ls~n-~l~~lp~-~~~l~~L~~L~Ls~N~-l~~lp~----~~~~l~~L~~L~Ls~N-~l~~lp-~l~~l~~L~~  512 (567)
T 1dce_A          442 DVRVLHLAHK-DLTVLCH-LEQLLLVTHLDLSHNR-LRALPP----ALAALRCLEVLQASDN-ALENVD-GVANLPRLQE  512 (567)
T ss_dssp             TCSEEECTTS-CCSSCCC-GGGGTTCCEEECCSSC-CCCCCG----GGGGCTTCCEEECCSS-CCCCCG-GGTTCSSCCE
T ss_pred             CceEEEecCC-CCCCCcC-ccccccCcEeecCccc-ccccch----hhhcCCCCCEEECCCC-CCCCCc-ccCCCCCCcE
Confidence            5788889885 6777885 8888899999998864 778888    7888999999999884 577788 7788889999


Q ss_pred             EEEecCchhHHhhcCCC-CCCCcccCCCCceEEcCcc
Q 048450           83 LTIHRCPLLENRYREGK-GEDWHKISHIPHIKWSITR  118 (133)
Q Consensus        83 L~i~~c~~l~~~~~~~~-~~~~~~i~~l~~l~~~~~~  118 (133)
                      |+++++. +..    .. +..+..++++..|.+.++.
T Consensus       513 L~Ls~N~-l~~----~~~p~~l~~l~~L~~L~L~~N~  544 (567)
T 1dce_A          513 LLLCNNR-LQQ----SAAIQPLVSCPRLVLLNLQGNS  544 (567)
T ss_dssp             EECCSSC-CCS----SSTTGGGGGCTTCCEEECTTSG
T ss_pred             EECCCCC-CCC----CCCcHHHhcCCCCCEEEecCCc
Confidence            9998875 221    11 3334556677777777653

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=98.84  E-value=2.5e-08  Score=67.78  Aligned_cols=83  Identities=13%  Similarity=0.165  Sum_probs=67.9

Q ss_pred             CCCccEEeecCCCCCccCCc-cCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCcc-CcCCCCCC
Q 048450            1 MPRLSSLTVGSCNKLKALPD-YLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVL-PDYLLQTT   78 (133)
Q Consensus         1 l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~l-p~~~~~l~   78 (133)
                      +++|++|+++++ .+..++. .+..+++|++|+++++. +..++..   .+..+++|++|+++++. ++.+ |..+..++
T Consensus        80 l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~---~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~  153 (220)
T 2v70_A           80 ASGVNEILLTSN-RLENVQHKMFKGLESLKTLMLRSNR-ITCVGND---SFIGLSSVRLLSLYDNQ-ITTVAPGAFDTLH  153 (220)
T ss_dssp             CTTCCEEECCSS-CCCCCCGGGGTTCSSCCEEECTTSC-CCCBCTT---SSTTCTTCSEEECTTSC-CCCBCTTTTTTCT
T ss_pred             CCCCCEEECCCC-ccCccCHhHhcCCcCCCEEECCCCc-CCeECHh---HcCCCccCCEEECCCCc-CCEECHHHhcCCC
Confidence            468999999996 5666764 47899999999999965 6666432   78899999999999854 6666 67788999


Q ss_pred             CccEEEEecCc
Q 048450           79 TLQELTIHRCP   89 (133)
Q Consensus        79 ~L~~L~i~~c~   89 (133)
                      +|+.|++++++
T Consensus       154 ~L~~L~L~~N~  164 (220)
T 2v70_A          154 SLSTLNLLANP  164 (220)
T ss_dssp             TCCEEECCSCC
T ss_pred             CCCEEEecCcC
Confidence            99999999876

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=98.84  E-value=9.4e-09  Score=74.17  Aligned_cols=81  Identities=19%  Similarity=0.201  Sum_probs=49.7

Q ss_pred             CccEEeecCCCCCccCCc-cCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcC-CCCCCCc
Q 048450            3 RLSSLTVGSCNKLKALPD-YLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDY-LLQTTTL   80 (133)
Q Consensus         3 ~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~l~~L   80 (133)
                      +|++|+++++ .+..+|. .+..+++|+.|+++++. +..++..   .++.+++|++|+++++ .++.+|.. +..+++|
T Consensus        53 ~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~---~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L  126 (353)
T 2z80_A           53 AVKSLDLSNN-RITYISNSDLQRCVNLQALVLTSNG-INTIEED---SFSSLGSLEHLDLSYN-YLSNLSSSWFKPLSSL  126 (353)
T ss_dssp             TCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSC-CCEECTT---TTTTCTTCCEEECCSS-CCSSCCHHHHTTCTTC
T ss_pred             cCcEEECCCC-cCcccCHHHhccCCCCCEEECCCCc-cCccCHh---hcCCCCCCCEEECCCC-cCCcCCHhHhCCCccC
Confidence            5667777764 4555553 45667777777776653 5555431   4666677777777663 35556544 5566677


Q ss_pred             cEEEEecCc
Q 048450           81 QELTIHRCP   89 (133)
Q Consensus        81 ~~L~i~~c~   89 (133)
                      ++|+++++.
T Consensus       127 ~~L~L~~n~  135 (353)
T 2z80_A          127 TFLNLLGNP  135 (353)
T ss_dssp             SEEECTTCC
T ss_pred             CEEECCCCC
Confidence            777776653

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.83  E-value=3e-08  Score=64.94  Aligned_cols=83  Identities=27%  Similarity=0.392  Sum_probs=68.5

Q ss_pred             CCCccEEeecCCCCCccCCcc-CCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcC-CCCCC
Q 048450            1 MPRLSSLTVGSCNKLKALPDY-LLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDY-LLQTT   78 (133)
Q Consensus         1 l~~L~~L~l~~~~~l~~lp~~-~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~l~   78 (133)
                      +++|++|+++++ .+..+|.. +..+++|+.|+++++. +..+|..   .++.+++|++|+++++ .++.+|.. +..++
T Consensus        51 l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~---~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~  124 (177)
T 2o6r_A           51 LTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHENK-LQSLPNG---VFDKLTQLKELALDTN-QLKSVPDGIFDRLT  124 (177)
T ss_dssp             CTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTT---TTTTCTTCCEEECCSS-CCSCCCTTTTTTCT
T ss_pred             cccccEEECCCC-cceEeChhHccCCCccCEEECCCCC-ccccCHH---HhhCCcccCEEECcCC-cceEeCHHHhcCCc
Confidence            468999999996 67778754 5899999999999964 7777763   4688999999999985 57788876 46789


Q ss_pred             CccEEEEecCc
Q 048450           79 TLQELTIHRCP   89 (133)
Q Consensus        79 ~L~~L~i~~c~   89 (133)
                      +|++|++++++
T Consensus       125 ~L~~L~l~~N~  135 (177)
T 2o6r_A          125 SLQKIWLHTNP  135 (177)
T ss_dssp             TCCEEECCSSC
T ss_pred             ccCEEEecCCC
Confidence            99999999876

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.83  E-value=2e-08  Score=72.07  Aligned_cols=78  Identities=14%  Similarity=0.256  Sum_probs=44.6

Q ss_pred             CCccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCCcc
Q 048450            2 PRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTLQ   81 (133)
Q Consensus         2 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~   81 (133)
                      ++|++|+++++ .+..++. +..+++|++|+++++ .+..++     .++.+++|++|+++++. +..++. +..+++|+
T Consensus        66 ~~L~~L~l~~n-~i~~~~~-~~~l~~L~~L~L~~n-~i~~~~-----~~~~l~~L~~L~l~~n~-i~~~~~-~~~l~~L~  135 (347)
T 4fmz_A           66 TNLEYLNLNGN-QITDISP-LSNLVKLTNLYIGTN-KITDIS-----ALQNLTNLRELYLNEDN-ISDISP-LANLTKMY  135 (347)
T ss_dssp             TTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSS-CCCCCG-----GGTTCTTCSEEECTTSC-CCCCGG-GTTCTTCC
T ss_pred             CCccEEEccCC-ccccchh-hhcCCcCCEEEccCC-cccCch-----HHcCCCcCCEEECcCCc-ccCchh-hccCCcee
Confidence            45666666664 4445553 556666666666665 354443     35556666666666543 444444 45556666


Q ss_pred             EEEEecCc
Q 048450           82 ELTIHRCP   89 (133)
Q Consensus        82 ~L~i~~c~   89 (133)
                      .|++++|.
T Consensus       136 ~L~l~~n~  143 (347)
T 4fmz_A          136 SLNLGANH  143 (347)
T ss_dssp             EEECTTCT
T ss_pred             EEECCCCC
Confidence            66666654

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=98.82  E-value=1.3e-08  Score=77.74  Aligned_cols=110  Identities=20%  Similarity=0.297  Sum_probs=70.5

Q ss_pred             CCccEEeecCCCCCcc-CCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCc-CCCCCCC
Q 048450            2 PRLSSLTVGSCNKLKA-LPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPD-YLLQTTT   79 (133)
Q Consensus         2 ~~L~~L~l~~~~~l~~-lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~l~~   79 (133)
                      ++|++|+++++..... .|..+..+++|+.|++++|. +..++..   .++.+++|++|+++++ .+..++. .+..+++
T Consensus       469 ~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~-L~~l~~~---~f~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~  543 (635)
T 4g8a_A          469 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPT---AFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNS  543 (635)
T ss_dssp             TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECTT---TTTTCTTCCEEECTTS-CCCBCCCGGGTTCTT
T ss_pred             hhhhhhhhhhcccccccCchhhhhccccCEEECCCCc-cCCcChH---HHcCCCCCCEEECCCC-cCCCCChhHHhCCCC
Confidence            4667777777644443 34566778888888888864 6666432   6777888888888774 4666653 4667788


Q ss_pred             ccEEEEecCchhHHhhcCCCCCCCccc-CCCCceEEcCcccee
Q 048450           80 LQELTIHRCPLLENRYREGKGEDWHKI-SHIPHIKWSITRWCC  121 (133)
Q Consensus        80 L~~L~i~~c~~l~~~~~~~~~~~~~~i-~~l~~l~~~~~~~~~  121 (133)
                      |+.|+++++.-..     ..+..+..+ +.+..|.+.++++-|
T Consensus       544 L~~L~Ls~N~l~~-----~~~~~l~~l~~~L~~L~L~~Np~~C  581 (635)
T 4g8a_A          544 LQVLDYSLNHIMT-----SKKQELQHFPSSLAFLNLTQNDFAC  581 (635)
T ss_dssp             CCEEECTTSCCCB-----CCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred             CCEEECCCCcCCC-----CCHHHHHhhhCcCCEEEeeCCCCcc
Confidence            8888888765211     112223333 467777777777743

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=98.82  E-value=1.2e-08  Score=77.23  Aligned_cols=82  Identities=20%  Similarity=0.258  Sum_probs=44.4

Q ss_pred             CCccEEeecCCCCCccCC-ccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCC--ccCcCCCCCC
Q 048450            2 PRLSSLTVGSCNKLKALP-DYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLK--VLPDYLLQTT   78 (133)
Q Consensus         2 ~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~--~lp~~~~~l~   78 (133)
                      ++|++|+++++ .+..++ ..+..+++|++|+++++. +..++..   .++.+++|++|+++++. +.  .+|..+.+++
T Consensus        50 ~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~---~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~  123 (549)
T 2z81_A           50 ANLQVLILKSS-RINTIEGDAFYSLGSLEHLDLSDNH-LSSLSSS---WFGPLSSLKYLNLMGNP-YQTLGVTSLFPNLT  123 (549)
T ss_dssp             TTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSC-CCSCCHH---HHTTCTTCCEEECTTCC-CSSSCSSCSCTTCT
T ss_pred             CcccEEECCCC-CcCccChhhccccccCCEEECCCCc-cCccCHH---HhccCCCCcEEECCCCc-ccccchhhhhhccC
Confidence            56667777665 344443 445666666666666643 4444431   35556666666665543 33  2344455555


Q ss_pred             CccEEEEecCc
Q 048450           79 TLQELTIHRCP   89 (133)
Q Consensus        79 ~L~~L~i~~c~   89 (133)
                      +|++|+++++.
T Consensus       124 ~L~~L~L~~n~  134 (549)
T 2z81_A          124 NLQTLRIGNVE  134 (549)
T ss_dssp             TCCEEEEEESS
T ss_pred             CccEEECCCCc
Confidence            66666665543

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.82  E-value=3.9e-08  Score=64.31  Aligned_cols=104  Identities=19%  Similarity=0.253  Sum_probs=79.5

Q ss_pred             ccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcC-CCCCCCccE
Q 048450            4 LSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDY-LLQTTTLQE   82 (133)
Q Consensus         4 L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~l~~L~~   82 (133)
                      .+++++++ ..+..+|..+.  ++|+.|+++++. +..++..   .++.+++|++|+++++ .+..+|.. +..+++|++
T Consensus        11 ~~~l~~s~-n~l~~ip~~~~--~~l~~L~L~~N~-i~~~~~~---~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~   82 (170)
T 3g39_A           11 GTTVDCSG-KSLASVPTGIP--TTTQVLYLYDNQ-ITKLEPG---VFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQ   82 (170)
T ss_dssp             TTEEECTT-SCCSSCCSCCC--TTCSEEECCSSC-CCCCCTT---TTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCE
T ss_pred             CCEEEeCC-CCcCccCccCC--CCCcEEEcCCCc-CCccChh---hhcCcccCCEEECCCC-CcCccChhhccCCCCCCE
Confidence            46788888 47888997653  789999999964 7777442   7889999999999984 58888876 478999999


Q ss_pred             EEEecCchhHHhhcCCCCCCCcccCCCCceEEcCccce
Q 048450           83 LTIHRCPLLENRYREGKGEDWHKISHIPHIKWSITRWC  120 (133)
Q Consensus        83 L~i~~c~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~~  120 (133)
                      |+++++. +..    .....+..+.++..|.+.++++.
T Consensus        83 L~L~~N~-l~~----~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           83 LSLNDNQ-LKS----IPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             EECCSSC-CCC----CCTTTTTTCTTCCEEECCSSCBC
T ss_pred             EECCCCc-cCE----eCHHHhcCCCCCCEEEeCCCCCC
Confidence            9999875 321    12223567788888888887764

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=98.81  E-value=1.3e-08  Score=79.01  Aligned_cols=81  Identities=19%  Similarity=0.238  Sum_probs=44.7

Q ss_pred             CccEEeecCCCCCccCCccCC--CCCCccEEEeccCCCCccccccccccCCCCCCccEEeec------CCCCCCccCcCC
Q 048450            3 RLSSLTVGSCNKLKALPDYLL--QTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWIS------DCPNLKVLPDYL   74 (133)
Q Consensus         3 ~L~~L~l~~~~~l~~lp~~~~--~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~------~c~~l~~lp~~~   74 (133)
                      +|++|+++++ .+..+|..+.  .+++|+.|+++++. +..+|.    .++.+++|++|+++      ++...+.+|..+
T Consensus       489 ~L~~L~Ls~N-~l~~lp~~~~~~~l~~L~~L~Ls~N~-l~~ip~----~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l  562 (636)
T 4eco_A          489 LLTSIDLRFN-KLTKLSDDFRATTLPYLVGIDLSYNS-FSKFPT----QPLNSSTLKGFGIRNQRDAQGNRTLREWPEGI  562 (636)
T ss_dssp             GCCEEECCSS-CCCBCCGGGSTTTCTTCCEEECCSSC-CSSCCC----GGGGCSSCCEEECCSCBCTTCCBCCCCCCTTG
T ss_pred             CccEEECcCC-cCCccChhhhhccCCCcCEEECCCCC-CCCcCh----hhhcCCCCCEEECCCCcccccCcccccChHHH
Confidence            5556666554 3445555554  56666666666543 444555    55556666666663      233344555555


Q ss_pred             CCCCCccEEEEecCc
Q 048450           75 LQTTTLQELTIHRCP   89 (133)
Q Consensus        75 ~~l~~L~~L~i~~c~   89 (133)
                      ..+++|+.|++++|.
T Consensus       563 ~~l~~L~~L~Ls~N~  577 (636)
T 4eco_A          563 TLCPSLTQLQIGSND  577 (636)
T ss_dssp             GGCSSCCEEECCSSC
T ss_pred             hcCCCCCEEECCCCc
Confidence            556666666666554

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.81  E-value=3.8e-08  Score=75.79  Aligned_cols=83  Identities=18%  Similarity=0.251  Sum_probs=54.2

Q ss_pred             CCCccEEeecCCCCCccCC-ccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcC-CCCCC
Q 048450            1 MPRLSSLTVGSCNKLKALP-DYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDY-LLQTT   78 (133)
Q Consensus         1 l~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~l~   78 (133)
                      +++|++|+++++ .+..++ ..++.+++|+.|+++++. +..+|..   .++.+++|++|+++++ .+..+|.. +..++
T Consensus        74 l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~---~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~  147 (597)
T 3oja_B           74 FRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPH---VFQNVPLLTVLVLERN-DLSSLPRGIFHNTP  147 (597)
T ss_dssp             CCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC-CCCCCTT---TTTTCTTCCEEECCSS-CCCCCCTTTTTTCT
T ss_pred             CCCCcEEECCCC-CCCCCChHHhcCCCCCCEEECCCCc-CCCCCHH---HHcCCCCCCEEEeeCC-CCCCCCHHHhccCC
Confidence            356777777775 455554 356777777777777754 5555542   4567777777777764 35566655 36677


Q ss_pred             CccEEEEecCc
Q 048450           79 TLQELTIHRCP   89 (133)
Q Consensus        79 ~L~~L~i~~c~   89 (133)
                      +|++|+++++.
T Consensus       148 ~L~~L~Ls~N~  158 (597)
T 3oja_B          148 KLTTLSMSNNN  158 (597)
T ss_dssp             TCCEEECCSSC
T ss_pred             CCCEEEeeCCc
Confidence            77777777664

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.81  E-value=4.9e-08  Score=64.15  Aligned_cols=103  Identities=17%  Similarity=0.236  Sum_probs=77.8

Q ss_pred             cEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcC-CCCCCCccEE
Q 048450            5 SSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDY-LLQTTTLQEL   83 (133)
Q Consensus         5 ~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~l~~L~~L   83 (133)
                      +.+++++ ..+..+|..+.  ++|+.|+++++. +..++..   .++.+++|++|+++++ .++.+|.. +..+++|+.|
T Consensus        15 ~~l~~~~-n~l~~iP~~~~--~~L~~L~Ls~N~-l~~~~~~---~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L   86 (174)
T 2r9u_A           15 TLVNCQN-IRLASVPAGIP--TDKQRLWLNNNQ-ITKLEPG---VFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQL   86 (174)
T ss_dssp             SEEECCS-SCCSSCCSCCC--TTCSEEECCSSC-CCCCCTT---TTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred             cEEEeCC-CCCCccCCCcC--CCCcEEEeCCCC-ccccCHH---HhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEE
Confidence            5678887 47888997664  799999999965 7777442   7889999999999984 68888876 4789999999


Q ss_pred             EEecCchhHHhhcCCCCCCCcccCCCCceEEcCccce
Q 048450           84 TIHRCPLLENRYREGKGEDWHKISHIPHIKWSITRWC  120 (133)
Q Consensus        84 ~i~~c~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~~  120 (133)
                      +++++. +..    .....+..+.++..|.+.++.+.
T Consensus        87 ~L~~N~-l~~----l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           87 DLNDNH-LKS----IPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             ECCSSC-CCC----CCTTTTTTCTTCSEEECCSSCBC
T ss_pred             ECCCCc-cce----eCHHHhccccCCCEEEeCCCCcc
Confidence            999875 221    11222556778888888887653

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.80  E-value=8.7e-09  Score=79.28  Aligned_cols=81  Identities=22%  Similarity=0.313  Sum_probs=71.1

Q ss_pred             CCCccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCcc--CcCCCCCC
Q 048450            1 MPRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVL--PDYLLQTT   78 (133)
Q Consensus         1 l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~l--p~~~~~l~   78 (133)
                      +++|+.|+++++ .+..+|..++.+++|+.|+++++. +..+|.     ++.+++|+.|+++++ .+..+  |..+..++
T Consensus       462 l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~-----l~~l~~L~~L~Ls~N-~l~~~~~p~~l~~l~  533 (567)
T 1dce_A          462 LLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDNA-LENVDG-----VANLPRLQELLLCNN-RLQQSAAIQPLVSCP  533 (567)
T ss_dssp             GTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSC-CCCCGG-----GTTCSSCCEEECCSS-CCCSSSTTGGGGGCT
T ss_pred             cccCcEeecCcc-cccccchhhhcCCCCCEEECCCCC-CCCCcc-----cCCCCCCcEEECCCC-CCCCCCCcHHHhcCC
Confidence            468999999996 677999999999999999999964 777874     888999999999985 57777  88899999


Q ss_pred             CccEEEEecCc
Q 048450           79 TLQELTIHRCP   89 (133)
Q Consensus        79 ~L~~L~i~~c~   89 (133)
                      +|+.|++++++
T Consensus       534 ~L~~L~L~~N~  544 (567)
T 1dce_A          534 RLVLLNLQGNS  544 (567)
T ss_dssp             TCCEEECTTSG
T ss_pred             CCCEEEecCCc
Confidence            99999999986

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.79  E-value=7.3e-09  Score=67.96  Aligned_cols=80  Identities=14%  Similarity=0.186  Sum_probs=48.2

Q ss_pred             CCccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCC-CCCCCc
Q 048450            2 PRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYL-LQTTTL   80 (133)
Q Consensus         2 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~-~~l~~L   80 (133)
                      ++|++|+++++ .+..+|......++|+.|+++++. +..+ .    .++.+++|++|+++++ .+..+|..+ ..+++|
T Consensus        19 ~~L~~L~l~~n-~l~~i~~~~~~~~~L~~L~Ls~N~-l~~~-~----~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L   90 (176)
T 1a9n_A           19 VRDRELDLRGY-KIPVIENLGATLDQFDAIDFSDNE-IRKL-D----GFPLLRRLKTLLVNNN-RICRIGEGLDQALPDL   90 (176)
T ss_dssp             TSCEEEECTTS-CCCSCCCGGGGTTCCSEEECCSSC-CCEE-C----CCCCCSSCCEEECCSS-CCCEECSCHHHHCTTC
T ss_pred             CCceEEEeeCC-CCchhHHhhhcCCCCCEEECCCCC-CCcc-c----ccccCCCCCEEECCCC-cccccCcchhhcCCCC
Confidence            45677777775 455565322223377777777753 5555 3    4666777777777664 355666544 556677


Q ss_pred             cEEEEecCc
Q 048450           81 QELTIHRCP   89 (133)
Q Consensus        81 ~~L~i~~c~   89 (133)
                      ++|+++++.
T Consensus        91 ~~L~L~~N~   99 (176)
T 1a9n_A           91 TELILTNNS   99 (176)
T ss_dssp             CEEECCSCC
T ss_pred             CEEECCCCc
Confidence            777776654

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=98.79  E-value=4.6e-08  Score=78.11  Aligned_cols=84  Identities=17%  Similarity=0.098  Sum_probs=70.2

Q ss_pred             CCccEEeecCCCCCccC-CccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCCc
Q 048450            2 PRLSSLTVGSCNKLKAL-PDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTL   80 (133)
Q Consensus         2 ~~L~~L~l~~~~~l~~l-p~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L   80 (133)
                      +++++|+++++ .+..+ |..+..+++|++|+++++.....++.+   .++++++|++|+++++......|..+.++++|
T Consensus        24 ~~l~~LdLs~N-~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~---~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L   99 (844)
T 3j0a_A           24 NTTERLLLSFN-YIRTVTASSFPFLEQLQLLELGSQYTPLTIDKE---AFRNLPNLRILDLGSSKIYFLHPDAFQGLFHL   99 (844)
T ss_dssp             TTCCEEEEESC-CCCEECSSSCSSCCSCSEEEECTTCCCCEECTT---TTSSCTTCCEEECTTCCCCEECTTSSCSCSSC
T ss_pred             CCcCEEECCCC-cCCccChhHCcccccCeEEeCCCCCCccccCHH---HhcCCCCCCEEECCCCcCcccCHhHccCCccc
Confidence            67999999996 45555 577899999999999998777788432   79999999999999976444458889999999


Q ss_pred             cEEEEecCc
Q 048450           81 QELTIHRCP   89 (133)
Q Consensus        81 ~~L~i~~c~   89 (133)
                      ++|++++|.
T Consensus       100 ~~L~Ls~n~  108 (844)
T 3j0a_A          100 FELRLYFCG  108 (844)
T ss_dssp             CCEECTTCC
T ss_pred             CEeeCcCCC
Confidence            999999885

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=98.79  E-value=2.1e-08  Score=75.63  Aligned_cols=80  Identities=14%  Similarity=0.074  Sum_probs=40.4

Q ss_pred             CCccEEeecCCCCCccC-CccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCC-ccCcCCCCCCC
Q 048450            2 PRLSSLTVGSCNKLKAL-PDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLK-VLPDYLLQTTT   79 (133)
Q Consensus         2 ~~L~~L~l~~~~~l~~l-p~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~-~lp~~~~~l~~   79 (133)
                      ++|++|+++++ .+..+ |..++.+++|++|+++++ .++.+|.    .  .+++|++|+++++.... .+|..++.+++
T Consensus        45 ~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~----~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~  116 (520)
T 2z7x_B           45 SKLRILIISHN-RIQYLDISVFKFNQELEYLDLSHN-KLVKISC----H--PTVNLKHLDLSFNAFDALPICKEFGNMSQ  116 (520)
T ss_dssp             TTCCEEECCSS-CCCEEEGGGGTTCTTCCEEECCSS-CCCEEEC----C--CCCCCSEEECCSSCCSSCCCCGGGGGCTT
T ss_pred             ccccEEecCCC-ccCCcChHHhhcccCCCEEecCCC-ceeecCc----c--ccCCccEEeccCCccccccchhhhccCCc
Confidence            44555555554 23333 344555555555555554 2445554    3  45556666665543222 24455555566


Q ss_pred             ccEEEEecCc
Q 048450           80 LQELTIHRCP   89 (133)
Q Consensus        80 L~~L~i~~c~   89 (133)
                      |++|+++++.
T Consensus       117 L~~L~L~~n~  126 (520)
T 2z7x_B          117 LKFLGLSTTH  126 (520)
T ss_dssp             CCEEEEEESS
T ss_pred             ceEEEecCcc
Confidence            6666665543

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=98.79  E-value=5.1e-08  Score=67.97  Aligned_cols=80  Identities=18%  Similarity=0.295  Sum_probs=42.6

Q ss_pred             CccEEeecCCCCCccCCc-cCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccC-cCCCCCCCc
Q 048450            3 RLSSLTVGSCNKLKALPD-YLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLP-DYLLQTTTL   80 (133)
Q Consensus         3 ~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp-~~~~~l~~L   80 (133)
                      +|++|+++++ .+..++. .+..+++|+.|+++++. +..++..   .++.+++|++|+++++. +..++ ..+..+++|
T Consensus        29 ~l~~L~ls~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~---~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L  102 (276)
T 2z62_A           29 STKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDG---AYQSLSHLSTLILTGNP-IQSLALGAFSGLSSL  102 (276)
T ss_dssp             TCCEEECTTC-CCCEECTTTTTTCTTCSEEECTTCC-CCEECTT---TTTTCTTCCEEECTTCC-CCEECTTTTTTCTTC
T ss_pred             CccEEECCCC-cccccCHhHhccccCCcEEECCCCc-CCccCHH---HccCCcCCCEEECCCCc-cCccChhhhcCCccc
Confidence            4666666664 4444543 45566666666666653 4444432   45555666666665533 33333 334455555


Q ss_pred             cEEEEecC
Q 048450           81 QELTIHRC   88 (133)
Q Consensus        81 ~~L~i~~c   88 (133)
                      ++|+++++
T Consensus       103 ~~L~l~~n  110 (276)
T 2z62_A          103 QKLVAVET  110 (276)
T ss_dssp             CEEECTTS
T ss_pred             cEEECCCC
Confidence            55555544

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.78  E-value=2.5e-08  Score=71.71  Aligned_cols=83  Identities=27%  Similarity=0.224  Sum_probs=58.2

Q ss_pred             CCccEEeecCCCCCccCC-ccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCCc
Q 048450            2 PRLSSLTVGSCNKLKALP-DYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTL   80 (133)
Q Consensus         2 ~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L   80 (133)
                      ++|++|+|++.+.+..+| ..++.+++|+.|+++++ .+..++..   .++.+++|++|++++ +.+..+|..+.....|
T Consensus        31 ~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~---~~~~l~~L~~L~l~~-N~l~~~~~~~~~~~~L  105 (347)
T 2ifg_A           31 ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPD---AFHFTPRLSRLNLSF-NALESLSWKTVQGLSL  105 (347)
T ss_dssp             SCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTT---GGGSCSCCCEEECCS-SCCSCCCSTTTCSCCC
T ss_pred             CCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHH---HhcCCcCCCEEeCCC-CccceeCHHHcccCCc
Confidence            467888887645677777 45778888888888885 46666653   567788888888877 4577777654433348


Q ss_pred             cEEEEecCc
Q 048450           81 QELTIHRCP   89 (133)
Q Consensus        81 ~~L~i~~c~   89 (133)
                      +.|++.+++
T Consensus       106 ~~l~l~~N~  114 (347)
T 2ifg_A          106 QELVLSGNP  114 (347)
T ss_dssp             CEEECCSSC
T ss_pred             eEEEeeCCC
Confidence            888887654

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=98.77  E-value=1.8e-08  Score=80.97  Aligned_cols=55  Identities=18%  Similarity=0.248  Sum_probs=25.4

Q ss_pred             CccEEEeccCCCCccccccccccCC--CCCCccEEeecCCCCCCccCcCCCCCCCccEEEEec
Q 048450           27 ALQELSICSCDLLEELPILEDRRTT--DIPRLTSLWISDCPNLKVLPDYLLQTTTLQELTIHR   87 (133)
Q Consensus        27 ~L~~L~l~~c~~l~~lp~~~~~~~~--~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~i~~   87 (133)
                      +|+.|++++|. +..+|.    .+.  .+++|+.|+++++. +..+|..+..+++|+.|++++
T Consensus       729 ~L~~L~Ls~N~-L~~lp~----~l~~~~l~~L~~L~Ls~N~-L~~lp~~l~~L~~L~~L~Ls~  785 (876)
T 4ecn_A          729 LLTTIDLRFNK-LTSLSD----DFRATTLPYLSNMDVSYNC-FSSFPTQPLNSSQLKAFGIRH  785 (876)
T ss_dssp             GCCEEECCSSC-CCCCCG----GGSTTTCTTCCEEECCSSC-CSSCCCGGGGCTTCCEEECCC
T ss_pred             CccEEECCCCC-CccchH----HhhhccCCCcCEEEeCCCC-CCccchhhhcCCCCCEEECCC
Confidence            45555555442 444444    333  44555555554432 333444444444555555544

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.77  E-value=5.2e-09  Score=66.72  Aligned_cols=81  Identities=22%  Similarity=0.332  Sum_probs=67.4

Q ss_pred             CCCccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCcc-ccccccccCCCCCCccEEeecCCCCCCccC--cCCCCC
Q 048450            1 MPRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEE-LPILEDRRTTDIPRLTSLWISDCPNLKVLP--DYLLQT   77 (133)
Q Consensus         1 l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~-lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp--~~~~~l   77 (133)
                      +++|++|+++++ .+..+ ..++.+++|+.|+++++. +.. +|.    .++.+++|++|+++++. ++.+|  ..+..+
T Consensus        41 l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~n~-i~~~~~~----~~~~l~~L~~L~ls~N~-i~~~~~~~~~~~l  112 (149)
T 2je0_A           41 FEELEFLSTINV-GLTSI-ANLPKLNKLKKLELSDNR-VSGGLEV----LAEKCPNLTHLNLSGNK-IKDLSTIEPLKKL  112 (149)
T ss_dssp             CTTCCEEECTTS-CCCCC-TTCCCCTTCCEEECCSSC-CCSCTHH----HHHHCTTCCEEECTTSC-CCSHHHHGGGGGC
T ss_pred             cCCCcEEECcCC-CCCCc-hhhhcCCCCCEEECCCCc-ccchHHH----HhhhCCCCCEEECCCCc-CCChHHHHHHhhC
Confidence            478999999996 66666 578899999999999976 555 776    66679999999999865 66664  678889


Q ss_pred             CCccEEEEecCc
Q 048450           78 TTLQELTIHRCP   89 (133)
Q Consensus        78 ~~L~~L~i~~c~   89 (133)
                      ++|++|++++++
T Consensus       113 ~~L~~L~l~~N~  124 (149)
T 2je0_A          113 ENLKSLDLFNCE  124 (149)
T ss_dssp             TTCCEEECTTCG
T ss_pred             CCCCEEeCcCCc
Confidence            999999999985

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=98.77  E-value=5.7e-08  Score=74.46  Aligned_cols=80  Identities=15%  Similarity=0.141  Sum_probs=35.6

Q ss_pred             CccEEeecCCCCCccC-CccCCCCCCccEEEeccCCCCccc-cccccccCCCCCCccEEeecCCCCCCccCcCCCCCCCc
Q 048450            3 RLSSLTVGSCNKLKAL-PDYLLQTTALQELSICSCDLLEEL-PILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTL   80 (133)
Q Consensus         3 ~L~~L~l~~~~~l~~l-p~~~~~l~~L~~L~l~~c~~l~~l-p~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L   80 (133)
                      ++++|+++++ .+..+ |..++.+++|++|+++++. +..+ |.    .++.+++|++|+++++......|..+..+++|
T Consensus        34 ~l~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~----~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  107 (606)
T 3t6q_A           34 STECLEFSFN-VLPTIQNTTFSRLINLTFLDLTRCQ-IYWIHED----TFQSQHRLDTLVLTANPLIFMAETALSGPKAL  107 (606)
T ss_dssp             TCCEEECTTC-CCSEECTTTSTTCTTCSEEECTTCC-CCEECTT----TTTTCTTCCEEECTTCCCSEECTTTTSSCTTC
T ss_pred             cCcEEEccCC-ccCcCChhHhccCccceEEECCCCc-cceeChh----hccCccccCeeeCCCCcccccChhhhcccccc
Confidence            3455555553 33333 2344555555555555543 3333 22    44445555555554433222223344444444


Q ss_pred             cEEEEecC
Q 048450           81 QELTIHRC   88 (133)
Q Consensus        81 ~~L~i~~c   88 (133)
                      ++|+++++
T Consensus       108 ~~L~L~~n  115 (606)
T 3t6q_A          108 KHLFFIQT  115 (606)
T ss_dssp             CEEECTTS
T ss_pred             cEeecccc
Confidence            44444443

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.76  E-value=5.6e-08  Score=70.56  Aligned_cols=80  Identities=20%  Similarity=0.274  Sum_probs=35.0

Q ss_pred             CccEEeecCCCCCccCC-ccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCcc-CcCCCCCCCc
Q 048450            3 RLSSLTVGSCNKLKALP-DYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVL-PDYLLQTTTL   80 (133)
Q Consensus         3 ~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~l-p~~~~~l~~L   80 (133)
                      +|++|+++++ .+..++ ..+..+++|+.|+++++. +..++..   .+..+++|++|+++++. +..+ |..+..+++|
T Consensus        65 ~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~---~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L  138 (361)
T 2xot_A           65 NLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSSNH-LHTLDEF---LFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQL  138 (361)
T ss_dssp             TCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC-CCEECTT---TTTTCTTCCEEECCSSC-CCEECTTTTTTCTTC
T ss_pred             ccCEEECCCC-cCCccChhhccCCCCCCEEECCCCc-CCcCCHH---HhCCCcCCCEEECCCCc-ccEECHHHhCCcccC
Confidence            4444444442 333333 224444555555554432 4444331   34445555555554432 3333 3334445555


Q ss_pred             cEEEEecC
Q 048450           81 QELTIHRC   88 (133)
Q Consensus        81 ~~L~i~~c   88 (133)
                      +.|+++++
T Consensus       139 ~~L~L~~N  146 (361)
T 2xot_A          139 QKLYLSQN  146 (361)
T ss_dssp             CEEECCSS
T ss_pred             CEEECCCC
Confidence            55555544

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=98.75  E-value=1.3e-08  Score=72.44  Aligned_cols=83  Identities=17%  Similarity=0.194  Sum_probs=57.8

Q ss_pred             CCCccEEeecCCCCCccCCccC--CCCCCccEEEeccCCCCccccccccccCCCC-----CCccEEeecCCCCCCccC-c
Q 048450            1 MPRLSSLTVGSCNKLKALPDYL--LQTTALQELSICSCDLLEELPILEDRRTTDI-----PRLTSLWISDCPNLKVLP-D   72 (133)
Q Consensus         1 l~~L~~L~l~~~~~l~~lp~~~--~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l-----~~L~~L~l~~c~~l~~lp-~   72 (133)
                      +++|++|+++++.-...+|..+  ..+++|++|+++++. +..+|.    .++.+     ++|++|+++++. +..++ .
T Consensus        94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~----~~~~l~~~~~~~L~~L~L~~N~-l~~~~~~  167 (312)
T 1wwl_A           94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS-WATRDA----WLAELQQWLKPGLKVLSIAQAH-SLNFSCE  167 (312)
T ss_dssp             TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCB-CSSSSS----HHHHHHTTCCTTCCEEEEESCS-CCCCCTT
T ss_pred             cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCC-CcchhH----HHHHHHHhhcCCCcEEEeeCCC-CccchHH
Confidence            3578888888865444677655  778888888888864 555554    45444     778888887754 44444 5


Q ss_pred             CCCCCCCccEEEEecCc
Q 048450           73 YLLQTTTLQELTIHRCP   89 (133)
Q Consensus        73 ~~~~l~~L~~L~i~~c~   89 (133)
                      .+..+++|++|+++++.
T Consensus       168 ~~~~l~~L~~L~Ls~N~  184 (312)
T 1wwl_A          168 QVRVFPALSTLDLSDNP  184 (312)
T ss_dssp             TCCCCSSCCEEECCSCT
T ss_pred             HhccCCCCCEEECCCCC
Confidence            67777788888887775

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=98.75  E-value=7.5e-08  Score=67.13  Aligned_cols=83  Identities=19%  Similarity=0.316  Sum_probs=56.2

Q ss_pred             CCCccEEeecCCCCCccCCc-cCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCc-CCCCCC
Q 048450            1 MPRLSSLTVGSCNKLKALPD-YLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPD-YLLQTT   78 (133)
Q Consensus         1 l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~l~   78 (133)
                      +++|++|+++++ .+..++. .+..+++|+.|+++++. +..++..   .+..+++|++|+++++. +..++. .+..++
T Consensus        51 l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~---~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~  124 (276)
T 2z62_A           51 FPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNP-IQSLALG---AFSGLSSLQKLVAVETN-LASLENFPIGHLK  124 (276)
T ss_dssp             CTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCC-CCEECTT---TTTTCTTCCEEECTTSC-CCCSTTCCCTTCT
T ss_pred             ccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCc-cCccChh---hhcCCccccEEECCCCC-ccccCchhcccCC
Confidence            467888888886 5556653 56778888888888864 5555532   56677777777777644 444443 466677


Q ss_pred             CccEEEEecCc
Q 048450           79 TLQELTIHRCP   89 (133)
Q Consensus        79 ~L~~L~i~~c~   89 (133)
                      +|++|+++++.
T Consensus       125 ~L~~L~l~~n~  135 (276)
T 2z62_A          125 TLKELNVAHNL  135 (276)
T ss_dssp             TCCEEECCSSC
T ss_pred             CCCEEECcCCc
Confidence            77777777654

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.74  E-value=2.3e-08  Score=65.52  Aligned_cols=80  Identities=21%  Similarity=0.279  Sum_probs=68.2

Q ss_pred             CCccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccC-CCCCCccEEeecCCCCCCccCc--CCCCCC
Q 048450            2 PRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRT-TDIPRLTSLWISDCPNLKVLPD--YLLQTT   78 (133)
Q Consensus         2 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~-~~l~~L~~L~l~~c~~l~~lp~--~~~~l~   78 (133)
                      ++|++|+++++ .+..+ ..+..+++|+.|+++++. +..+|.    .+ +.+++|++|+++++ .++.+|.  .+..++
T Consensus        42 ~~L~~L~Ls~N-~l~~~-~~l~~l~~L~~L~Ls~N~-l~~~~~----~~~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~  113 (176)
T 1a9n_A           42 DQFDAIDFSDN-EIRKL-DGFPLLRRLKTLLVNNNR-ICRIGE----GLDQALPDLTELILTNN-SLVELGDLDPLASLK  113 (176)
T ss_dssp             TCCSEEECCSS-CCCEE-CCCCCCSSCCEEECCSSC-CCEECS----CHHHHCTTCCEEECCSC-CCCCGGGGGGGGGCT
T ss_pred             CCCCEEECCCC-CCCcc-cccccCCCCCEEECCCCc-ccccCc----chhhcCCCCCEEECCCC-cCCcchhhHhhhcCC
Confidence            48999999996 67777 578899999999999965 888886    44 78999999999985 4788887  678899


Q ss_pred             CccEEEEecCc
Q 048450           79 TLQELTIHRCP   89 (133)
Q Consensus        79 ~L~~L~i~~c~   89 (133)
                      +|+.|++++++
T Consensus       114 ~L~~L~l~~N~  124 (176)
T 1a9n_A          114 SLTYLCILRNP  124 (176)
T ss_dssp             TCCEEECCSSG
T ss_pred             CCCEEEecCCC
Confidence            99999999987

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=98.74  E-value=4.1e-08  Score=76.25  Aligned_cols=80  Identities=20%  Similarity=0.281  Sum_probs=38.3

Q ss_pred             CccEEeecCCCCCccC-CccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccC-cCCCCCCCc
Q 048450            3 RLSSLTVGSCNKLKAL-PDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLP-DYLLQTTTL   80 (133)
Q Consensus         3 ~L~~L~l~~~~~l~~l-p~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp-~~~~~l~~L   80 (133)
                      +|++|+++++. +..+ |..++.+++|++|+++++. +..+|..   .++.+++|++|+++++. +..+| ..+.++++|
T Consensus        50 ~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~---~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L  123 (680)
T 1ziw_A           50 QLTSLDVGFNT-ISKLEPELCQKLPMLKVLNLQHNE-LSQLSDK---TFAFCTNLTELHLMSNS-IQKIKNNPFVKQKNL  123 (680)
T ss_dssp             TCSEEECCSSC-CCCCCTTHHHHCTTCCEEECCSSC-CCCCCTT---TTTTCTTCSEEECCSSC-CCCCCSCTTTTCTTC
T ss_pred             cCcEEECCCCc-cCccCHHHHhcccCcCEEECCCCc-cCccChh---hhccCCCCCEEECCCCc-cCccChhHccccCCC
Confidence            44455554432 2222 2333445555555555532 4444442   35555566666665543 33443 345555556


Q ss_pred             cEEEEecC
Q 048450           81 QELTIHRC   88 (133)
Q Consensus        81 ~~L~i~~c   88 (133)
                      ++|+++++
T Consensus       124 ~~L~Ls~n  131 (680)
T 1ziw_A          124 ITLDLSHN  131 (680)
T ss_dssp             CEEECCSS
T ss_pred             CEEECCCC
Confidence            66665554

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=98.74  E-value=5.4e-08  Score=73.38  Aligned_cols=61  Identities=21%  Similarity=0.467  Sum_probs=35.6

Q ss_pred             CCccEEeecCCCCCCccCcCCCCCCCccEEEEecCchhHHhhcCCCCC-CCcccCCCCceEEcCcccee
Q 048450           54 PRLTSLWISDCPNLKVLPDYLLQTTTLQELTIHRCPLLENRYREGKGE-DWHKISHIPHIKWSITRWCC  121 (133)
Q Consensus        54 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~-~~~~i~~l~~l~~~~~~~~~  121 (133)
                      ++|+.|+++++ .++.+|..+..+++|++|+++++. +..     .+. .+..+.++..+.+.++++.+
T Consensus       421 ~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N~-l~~-----l~~~~~~~l~~L~~L~l~~N~~~c  482 (520)
T 2z7x_B          421 PRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASNQ-LKS-----VPDGIFDRLTSLQKIWLHTNPWDC  482 (520)
T ss_dssp             TTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSC-CCC-----CCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             ccCCEEECCCC-cccccchhhhcCCCCCEEECCCCc-CCc-----cCHHHhccCCcccEEECcCCCCcc
Confidence            45666666554 355666666667777777777764 221     111 24456667777777766543

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=98.73  E-value=2.7e-08  Score=75.37  Aligned_cols=82  Identities=20%  Similarity=0.163  Sum_probs=54.0

Q ss_pred             CCccEEeecCCCCCccC-CccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcC-CCCCCC
Q 048450            2 PRLSSLTVGSCNKLKAL-PDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDY-LLQTTT   79 (133)
Q Consensus         2 ~~L~~L~l~~~~~l~~l-p~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~l~~   79 (133)
                      ++|++|+++++. +..+ |..+..+++|++|+++++. +..++.+   .++.+++|++|+++++. +..+|.. +..+++
T Consensus        26 ~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~---~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~   99 (549)
T 2z81_A           26 AAMKSLDLSFNK-ITYIGHGDLRACANLQVLILKSSR-INTIEGD---AFYSLGSLEHLDLSDNH-LSSLSSSWFGPLSS   99 (549)
T ss_dssp             TTCCEEECCSSC-CCEECSSTTSSCTTCCEEECTTSC-CCEECTT---TTTTCTTCCEEECTTSC-CCSCCHHHHTTCTT
T ss_pred             CCccEEECcCCc-cCccChhhhhcCCcccEEECCCCC-cCccChh---hccccccCCEEECCCCc-cCccCHHHhccCCC
Confidence            367777777753 4444 3556777778888777754 5555432   57777777888777754 4555443 667777


Q ss_pred             ccEEEEecCc
Q 048450           80 LQELTIHRCP   89 (133)
Q Consensus        80 L~~L~i~~c~   89 (133)
                      |++|+++++.
T Consensus       100 L~~L~Ls~n~  109 (549)
T 2z81_A          100 LKYLNLMGNP  109 (549)
T ss_dssp             CCEEECTTCC
T ss_pred             CcEEECCCCc
Confidence            7777777764

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=98.73  E-value=8.4e-08  Score=73.20  Aligned_cols=80  Identities=16%  Similarity=0.145  Sum_probs=41.3

Q ss_pred             CCccEEeecCCCCCccCC-ccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCCc
Q 048450            2 PRLSSLTVGSCNKLKALP-DYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTL   80 (133)
Q Consensus         2 ~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L   80 (133)
                      ++|++|+++++ .+..++ ..+..+++|++|+++++. +..++.+   .++.+++|++|+++++. ++.+|..  .+++|
T Consensus        52 ~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~---~~~~l~~L~~L~Ls~N~-l~~lp~~--~l~~L  123 (562)
T 3a79_B           52 PRTKALSLSQN-SISELRMPDISFLSELRVLRLSHNR-IRSLDFH---VFLFNQDLEYLDVSHNR-LQNISCC--PMASL  123 (562)
T ss_dssp             TTCCEEECCSS-CCCCCCGGGTTTCTTCCEEECCSCC-CCEECTT---TTTTCTTCCEEECTTSC-CCEECSC--CCTTC
T ss_pred             CCcCEEECCCC-CccccChhhhccCCCccEEECCCCC-CCcCCHH---HhCCCCCCCEEECCCCc-CCccCcc--ccccC
Confidence            34566666664 344444 345566666666666543 4444221   45555555555555532 4455544  44555


Q ss_pred             cEEEEecCc
Q 048450           81 QELTIHRCP   89 (133)
Q Consensus        81 ~~L~i~~c~   89 (133)
                      ++|+++++.
T Consensus       124 ~~L~Ls~N~  132 (562)
T 3a79_B          124 RHLDLSFND  132 (562)
T ss_dssp             SEEECCSSC
T ss_pred             CEEECCCCC
Confidence            555555443

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=98.71  E-value=5.3e-08  Score=78.34  Aligned_cols=81  Identities=17%  Similarity=0.224  Sum_probs=50.5

Q ss_pred             CccEEeecCCCCCccCCccCC--CCCCccEEEeccCCCCccccccccccCCCCCCccEEeecC------CCCCCccCcCC
Q 048450            3 RLSSLTVGSCNKLKALPDYLL--QTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISD------CPNLKVLPDYL   74 (133)
Q Consensus         3 ~L~~L~l~~~~~l~~lp~~~~--~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~------c~~l~~lp~~~   74 (133)
                      +|++|++++| .+..+|..+.  .+++|+.|+++++. +..+|.    .++.+++|+.|++++      +...+.+|..+
T Consensus       729 ~L~~L~Ls~N-~L~~lp~~l~~~~l~~L~~L~Ls~N~-L~~lp~----~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l  802 (876)
T 4ecn_A          729 LLTTIDLRFN-KLTSLSDDFRATTLPYLSNMDVSYNC-FSSFPT----QPLNSSQLKAFGIRHQRDAEGNRILRQWPTGI  802 (876)
T ss_dssp             GCCEEECCSS-CCCCCCGGGSTTTCTTCCEEECCSSC-CSSCCC----GGGGCTTCCEEECCCCBCTTCCBCCCCCCTTG
T ss_pred             CccEEECCCC-CCccchHHhhhccCCCcCEEEeCCCC-CCccch----hhhcCCCCCEEECCCCCCcccccccccChHHH
Confidence            5666666664 4556665554  66677777776653 555666    566666677776654      33345566666


Q ss_pred             CCCCCccEEEEecCc
Q 048450           75 LQTTTLQELTIHRCP   89 (133)
Q Consensus        75 ~~l~~L~~L~i~~c~   89 (133)
                      ..+++|+.|++++|.
T Consensus       803 ~~L~~L~~L~Ls~N~  817 (876)
T 4ecn_A          803 TTCPSLIQLQIGSND  817 (876)
T ss_dssp             GGCSSCCEEECCSSC
T ss_pred             hcCCCCCEEECCCCC
Confidence            666667777776665

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.70  E-value=8.4e-08  Score=69.64  Aligned_cols=82  Identities=18%  Similarity=0.165  Sum_probs=66.1

Q ss_pred             CCccEEeecCCCCCccCCcc-CC-CCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCc-CCCCCC
Q 048450            2 PRLSSLTVGSCNKLKALPDY-LL-QTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPD-YLLQTT   78 (133)
Q Consensus         2 ~~L~~L~l~~~~~l~~lp~~-~~-~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~l~   78 (133)
                      +.++.|+++++ .+..++.. +. .+++|+.|+++++. +..++.+   .+..+++|++|+++++ .+..++. .+..++
T Consensus        39 ~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N~-i~~i~~~---~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~  112 (361)
T 2xot_A           39 SYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHNH-LNFISSE---AFVPVPNLRYLDLSSN-HLHTLDEFLFSDLQ  112 (361)
T ss_dssp             TTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSSC-CCEECTT---TTTTCTTCCEEECCSS-CCCEECTTTTTTCT
T ss_pred             CCCCEEECCCC-CCCccChhhhhhcccccCEEECCCCc-CCccChh---hccCCCCCCEEECCCC-cCCcCCHHHhCCCc
Confidence            35789999985 67777744 44 89999999999964 7777753   6889999999999985 4777775 477899


Q ss_pred             CccEEEEecCc
Q 048450           79 TLQELTIHRCP   89 (133)
Q Consensus        79 ~L~~L~i~~c~   89 (133)
                      +|+.|+++++.
T Consensus       113 ~L~~L~L~~N~  123 (361)
T 2xot_A          113 ALEVLLLYNNH  123 (361)
T ss_dssp             TCCEEECCSSC
T ss_pred             CCCEEECCCCc
Confidence            99999999876

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.70  E-value=1.7e-07  Score=67.74  Aligned_cols=84  Identities=20%  Similarity=0.244  Sum_probs=68.2

Q ss_pred             CCccEEeecCCCCCccCCc-cCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccC-cCCCCCCC
Q 048450            2 PRLSSLTVGSCNKLKALPD-YLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLP-DYLLQTTT   79 (133)
Q Consensus         2 ~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp-~~~~~l~~   79 (133)
                      +++++|+++++ .++.+|. .+.++++|++|+++++..++.+|.+   .+..++++.++.+.+++.+..+| ..+..+++
T Consensus        30 ~~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~---~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~  105 (350)
T 4ay9_X           30 RNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEAD---VFSNLPKLHEIRIEKANNLLYINPEAFQNLPN  105 (350)
T ss_dssp             TTCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTCCEECTT---SBCSCTTCCEEEEEEETTCCEECTTSBCCCTT
T ss_pred             CCCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCCCccChh---HhhcchhhhhhhcccCCcccccCchhhhhccc
Confidence            47899999994 7888985 4689999999999998766777763   56778888887777778888885 45678899


Q ss_pred             ccEEEEecCc
Q 048450           80 LQELTIHRCP   89 (133)
Q Consensus        80 L~~L~i~~c~   89 (133)
                      |++|+++++.
T Consensus       106 L~~L~l~~n~  115 (350)
T 4ay9_X          106 LQYLLISNTG  115 (350)
T ss_dssp             CCEEEEEEEC
T ss_pred             cccccccccc
Confidence            9999998765

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=98.70  E-value=1.3e-07  Score=72.18  Aligned_cols=109  Identities=17%  Similarity=0.242  Sum_probs=63.9

Q ss_pred             CCccEEeecCCCCCccCC---ccCCCCCCccEEEeccCCCCccccccccccCCCC----------------------CCc
Q 048450            2 PRLSSLTVGSCNKLKALP---DYLLQTTALQELSICSCDLLEELPILEDRRTTDI----------------------PRL   56 (133)
Q Consensus         2 ~~L~~L~l~~~~~l~~lp---~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l----------------------~~L   56 (133)
                      ++|++|+++++ .+..++   ..++.+++|+.|+++++.-...+|..   .+..+                      ++|
T Consensus       377 ~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L  452 (562)
T 3a79_B          377 KRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDR---TCAWAESILVLNLSSNMLTGSVFRCLPPKV  452 (562)
T ss_dssp             SSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSC---CCCCCTTCCEEECCSSCCCGGGGSSCCTTC
T ss_pred             CCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCCcCCCccChh---hhcCcccCCEEECCCCCCCcchhhhhcCcC
Confidence            56667777664 444333   34566666666666665422224431   12222                      467


Q ss_pred             cEEeecCCCCCCccCcCCCCCCCccEEEEecCchhHHhhcCCCCCC-CcccCCCCceEEcCcccee
Q 048450           57 TSLWISDCPNLKVLPDYLLQTTTLQELTIHRCPLLENRYREGKGED-WHKISHIPHIKWSITRWCC  121 (133)
Q Consensus        57 ~~L~l~~c~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~-~~~i~~l~~l~~~~~~~~~  121 (133)
                      ++|+++++ .++.+|..+..+++|++|+++++. +..     .+.. +..+.++..+.+.++++.+
T Consensus       453 ~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N~-l~~-----l~~~~~~~l~~L~~L~l~~N~~~c  511 (562)
T 3a79_B          453 KVLDLHNN-RIMSIPKDVTHLQALQELNVASNQ-LKS-----VPDGVFDRLTSLQYIWLHDNPWDC  511 (562)
T ss_dssp             SEEECCSS-CCCCCCTTTTSSCCCSEEECCSSC-CCC-----CCTTSTTTCTTCCCEECCSCCBCC
T ss_pred             CEEECCCC-cCcccChhhcCCCCCCEEECCCCC-CCC-----CCHHHHhcCCCCCEEEecCCCcCC
Confidence            77777664 466777777777888888888765 221     1222 4566677778888776644

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=98.69  E-value=8.4e-08  Score=73.53  Aligned_cols=106  Identities=13%  Similarity=0.091  Sum_probs=78.2

Q ss_pred             CCCccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccc-cccccccCCCCCCccEEeecCCCCCCcc-CcCCCCCC
Q 048450            1 MPRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEEL-PILEDRRTTDIPRLTSLWISDCPNLKVL-PDYLLQTT   78 (133)
Q Consensus         1 l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l-p~~~~~~~~~l~~L~~L~l~~c~~l~~l-p~~~~~l~   78 (133)
                      +++|++|+++++.-..-.|..++.+++|++|+++++. +..+ |.    .++.+++|++|+++++. +..+ |..+..++
T Consensus        56 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~----~~~~l~~L~~L~L~~n~-i~~l~~~~~~~l~  129 (606)
T 3t6q_A           56 LINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP-LIFMAET----ALSGPKALKHLFFIQTG-ISSIDFIPLHNQK  129 (606)
T ss_dssp             CTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CSEECTT----TTSSCTTCCEEECTTSC-CSCGGGSCCTTCT
T ss_pred             CccceEEECCCCccceeChhhccCccccCeeeCCCCc-ccccChh----hhcccccccEeeccccC-cccCCcchhccCC
Confidence            4789999999974444346678999999999999976 5454 55    78999999999999865 6565 56688899


Q ss_pred             CccEEEEecCchhHHhhcCCCCCCCcccCCCCceEEcCc
Q 048450           79 TLQELTIHRCPLLENRYREGKGEDWHKISHIPHIKWSIT  117 (133)
Q Consensus        79 ~L~~L~i~~c~~l~~~~~~~~~~~~~~i~~l~~l~~~~~  117 (133)
                      +|++|+++++..-.     .....+..+.++..+.+.++
T Consensus       130 ~L~~L~L~~n~l~~-----~~~~~~~~l~~L~~L~L~~n  163 (606)
T 3t6q_A          130 TLESLYLGSNHISS-----IKLPKGFPTEKLKVLDFQNN  163 (606)
T ss_dssp             TCCEEECCSSCCCC-----CCCCTTCCCTTCCEEECCSS
T ss_pred             cccEEECCCCcccc-----cCcccccCCcccCEEEcccC
Confidence            99999999876211     11122333667777777664

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.69  E-value=6.3e-09  Score=68.86  Aligned_cols=86  Identities=14%  Similarity=0.277  Sum_probs=59.5

Q ss_pred             CccEEeecCCCCCccCC-ccCCCCCCccEEEeccCCCCccccccccccCCCC----CCccEEeecCCCCCCccC-cCCCC
Q 048450            3 RLSSLTVGSCNKLKALP-DYLLQTTALQELSICSCDLLEELPILEDRRTTDI----PRLTSLWISDCPNLKVLP-DYLLQ   76 (133)
Q Consensus         3 ~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l----~~L~~L~l~~c~~l~~lp-~~~~~   76 (133)
                      +|+.|++++|. +...- ..+..+++|+.|++++|..++.-...   .+..+    ++|++|++++|+.++.-- ..+.+
T Consensus        62 ~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~---~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~  137 (176)
T 3e4g_A           62 KIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLE---RLSQLENLQKSMLEMEIISCGNVTDKGIIALHH  137 (176)
T ss_dssp             CEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHH---HHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGG
T ss_pred             eEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHH---HHHhcccccCCCCEEEcCCCCcCCHHHHHHHhc
Confidence            47889999885 54322 34567889999999999877653221   34443    368999999998776521 12446


Q ss_pred             CCCccEEEEecCchhH
Q 048450           77 TTTLQELTIHRCPLLE   92 (133)
Q Consensus        77 l~~L~~L~i~~c~~l~   92 (133)
                      +++|++|++++|+.++
T Consensus       138 ~~~L~~L~L~~c~~It  153 (176)
T 3e4g_A          138 FRNLKYLFLSDLPGVK  153 (176)
T ss_dssp             CTTCCEEEEESCTTCC
T ss_pred             CCCCCEEECCCCCCCC
Confidence            7889999999998665

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.68  E-value=9.3e-08  Score=68.71  Aligned_cols=104  Identities=20%  Similarity=0.171  Sum_probs=75.8

Q ss_pred             EEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCc-CCCCCCCccEEE
Q 048450            6 SLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPD-YLLQTTTLQELT   84 (133)
Q Consensus         6 ~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~   84 (133)
                      .++.++.+.+..+|. +..+++|+.|++++...+..++.+   .++.+++|+.|+++++ .+..+|. .+.++++|+.|+
T Consensus        12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~---~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~   86 (347)
T 2ifg_A           12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELR---DLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLN   86 (347)
T ss_dssp             CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGG---GSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEE
T ss_pred             EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChh---HhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEe
Confidence            356666437888998 999999999999974568888853   7899999999999985 5777765 568899999999


Q ss_pred             EecCchhHHhhcCCCCCCCcccCCCCceEEcCccce
Q 048450           85 IHRCPLLENRYREGKGEDWHKISHIPHIKWSITRWC  120 (133)
Q Consensus        85 i~~c~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~~  120 (133)
                      ++++. +....    ...+..+. +..|.+.++.+-
T Consensus        87 l~~N~-l~~~~----~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           87 LSFNA-LESLS----WKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             CCSSC-CSCCC----STTTCSCC-CCEEECCSSCCC
T ss_pred             CCCCc-cceeC----HHHcccCC-ceEEEeeCCCcc
Confidence            99875 32111    11122222 677777776553

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.68  E-value=8.7e-08  Score=68.16  Aligned_cols=77  Identities=17%  Similarity=0.240  Sum_probs=42.4

Q ss_pred             CCccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCCcc
Q 048450            2 PRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTLQ   81 (133)
Q Consensus         2 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~   81 (133)
                      ++|++|+++++ .+..++. +..+++|+.|+++++. +..++     .+..+++|++|+++++. +..++. +..+++|+
T Consensus        63 ~~L~~L~L~~n-~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~-----~~~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~  132 (308)
T 1h6u_A           63 NNLIGLELKDN-QITDLAP-LKNLTKITELELSGNP-LKNVS-----AIAGLQSIKTLDLTSTQ-ITDVTP-LAGLSNLQ  132 (308)
T ss_dssp             TTCCEEECCSS-CCCCCGG-GTTCCSCCEEECCSCC-CSCCG-----GGTTCTTCCEEECTTSC-CCCCGG-GTTCTTCC
T ss_pred             CCCCEEEccCC-cCCCChh-HccCCCCCEEEccCCc-CCCch-----hhcCCCCCCEEECCCCC-CCCchh-hcCCCCCC
Confidence            45666666654 4445554 5566666666666643 44443     24556666666665543 444443 45555666


Q ss_pred             EEEEecC
Q 048450           82 ELTIHRC   88 (133)
Q Consensus        82 ~L~i~~c   88 (133)
                      +|+++++
T Consensus       133 ~L~l~~n  139 (308)
T 1h6u_A          133 VLYLDLN  139 (308)
T ss_dssp             EEECCSS
T ss_pred             EEECCCC
Confidence            6666554

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=98.67  E-value=5.1e-08  Score=74.01  Aligned_cols=83  Identities=27%  Similarity=0.433  Sum_probs=68.9

Q ss_pred             CCCccEEeecCCCCC-ccCCccCCCCCCccEEEeccCCCCccc-cccccccCCCCCCccEEeecCCCCCCccC-cCCCCC
Q 048450            1 MPRLSSLTVGSCNKL-KALPDYLLQTTALQELSICSCDLLEEL-PILEDRRTTDIPRLTSLWISDCPNLKVLP-DYLLQT   77 (133)
Q Consensus         1 l~~L~~L~l~~~~~l-~~lp~~~~~l~~L~~L~l~~c~~l~~l-p~~~~~~~~~l~~L~~L~l~~c~~l~~lp-~~~~~l   77 (133)
                      +++|++|++++|... ..+|..+..+++|+.|++++|. +..+ |.    .++.+++|++|++++|. +..+| ..+..+
T Consensus       444 l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~-l~~~~~~----~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l  517 (570)
T 2z63_A          444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPT----AFNSLSSLQVLNMASNQ-LKSVPDGIFDRL  517 (570)
T ss_dssp             CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECTT----TTTTCTTCCEEECCSSC-CSCCCTTTTTTC
T ss_pred             CCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCc-cccCChh----hhhcccCCCEEeCCCCc-CCCCCHHHhhcc
Confidence            478999999997543 3688888999999999999986 5555 66    78899999999999965 66665 457889


Q ss_pred             CCccEEEEecCc
Q 048450           78 TTLQELTIHRCP   89 (133)
Q Consensus        78 ~~L~~L~i~~c~   89 (133)
                      ++|+.|++++++
T Consensus       518 ~~L~~L~l~~N~  529 (570)
T 2z63_A          518 TSLQKIWLHTNP  529 (570)
T ss_dssp             TTCCEEECCSSC
T ss_pred             cCCcEEEecCCc
Confidence            999999999876

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=98.67  E-value=1.8e-07  Score=69.81  Aligned_cols=81  Identities=21%  Similarity=0.269  Sum_probs=66.6

Q ss_pred             CCccEEeecCCCCCccCC-ccCCCCCCccEEEeccCCCCccc-cccccccCCCCCCccEEeecCCCCCCccCcC-CCCCC
Q 048450            2 PRLSSLTVGSCNKLKALP-DYLLQTTALQELSICSCDLLEEL-PILEDRRTTDIPRLTSLWISDCPNLKVLPDY-LLQTT   78 (133)
Q Consensus         2 ~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~l-p~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~l~   78 (133)
                      +++++|+++++ .+..++ ..+..+++|+.|+++++. +..+ |.    .++.+++|++|+++++ .++.+|.. +.+++
T Consensus        32 ~~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~----~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~  104 (477)
T 2id5_A           32 TETRLLDLGKN-RIKTLNQDEFASFPHLEELELNENI-VSAVEPG----AFNNLFNLRTLGLRSN-RLKLIPLGVFTGLS  104 (477)
T ss_dssp             TTCSEEECCSS-CCCEECTTTTTTCTTCCEEECTTSC-CCEECTT----TTTTCTTCCEEECCSS-CCCSCCTTSSTTCT
T ss_pred             CCCcEEECCCC-ccceECHhHccCCCCCCEEECCCCc-cCEeChh----hhhCCccCCEEECCCC-cCCccCcccccCCC
Confidence            46899999996 566664 578899999999999974 6666 55    7899999999999985 47788764 67899


Q ss_pred             CccEEEEecCc
Q 048450           79 TLQELTIHRCP   89 (133)
Q Consensus        79 ~L~~L~i~~c~   89 (133)
                      +|++|+++++.
T Consensus       105 ~L~~L~Ls~n~  115 (477)
T 2id5_A          105 NLTKLDISENK  115 (477)
T ss_dssp             TCCEEECTTSC
T ss_pred             CCCEEECCCCc
Confidence            99999999875

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.67  E-value=4.5e-08  Score=69.78  Aligned_cols=80  Identities=11%  Similarity=0.136  Sum_probs=42.7

Q ss_pred             CCccEEeecCCCCCccCC-ccC-CCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCC
Q 048450            2 PRLSSLTVGSCNKLKALP-DYL-LQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTT   79 (133)
Q Consensus         2 ~~L~~L~l~~~~~l~~lp-~~~-~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~   79 (133)
                      ++|++|+++++ .+..++ ..+ ..+++|+.|+++++. +..++.     ...+++|++|+++++ .+..+|..+..+++
T Consensus       144 ~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~-----~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~  215 (317)
T 3o53_A          144 SRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNF-IYDVKG-----QVVFAKLKTLDLSSN-KLAFMGPEFQSAAG  215 (317)
T ss_dssp             SSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTSC-CCEEEC-----CCCCTTCCEEECCSS-CCCEECGGGGGGTT
T ss_pred             CCCCEEECCCC-CCCcccHHHHhhccCcCCEEECCCCc-Cccccc-----ccccccCCEEECCCC-cCCcchhhhcccCc
Confidence            45667777664 333332 223 345666666666643 555543     223556666666553 34555555555555


Q ss_pred             ccEEEEecCc
Q 048450           80 LQELTIHRCP   89 (133)
Q Consensus        80 L~~L~i~~c~   89 (133)
                      |+.|+++++.
T Consensus       216 L~~L~L~~N~  225 (317)
T 3o53_A          216 VTWISLRNNK  225 (317)
T ss_dssp             CSEEECTTSC
T ss_pred             ccEEECcCCc
Confidence            6666665543

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=98.66  E-value=1.6e-07  Score=67.08  Aligned_cols=81  Identities=17%  Similarity=0.244  Sum_probs=53.2

Q ss_pred             CccEEeecCCCCCccC-CccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCCcc
Q 048450            3 RLSSLTVGSCNKLKAL-PDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTLQ   81 (133)
Q Consensus         3 ~L~~L~l~~~~~l~~l-p~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~   81 (133)
                      +|++|+++++ .+..+ |..+..+++|+.|+++++. +..++..   .+..+++|++|+++++ .+..+|.++..+++|+
T Consensus       193 ~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~---~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~  266 (330)
T 1xku_A          193 SLTELHLDGN-KITKVDAASLKGLNNLAKLGLSFNS-ISAVDNG---SLANTPHLRELHLNNN-KLVKVPGGLADHKYIQ  266 (330)
T ss_dssp             TCSEEECTTS-CCCEECTGGGTTCTTCCEEECCSSC-CCEECTT---TGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCC
T ss_pred             cCCEEECCCC-cCCccCHHHhcCCCCCCEEECCCCc-CceeChh---hccCCCCCCEEECCCC-cCccCChhhccCCCcC
Confidence            4556666654 23333 3456677777777777754 5555432   5666778888888775 4667777777777888


Q ss_pred             EEEEecCc
Q 048450           82 ELTIHRCP   89 (133)
Q Consensus        82 ~L~i~~c~   89 (133)
                      +|+++++.
T Consensus       267 ~L~l~~N~  274 (330)
T 1xku_A          267 VVYLHNNN  274 (330)
T ss_dssp             EEECCSSC
T ss_pred             EEECCCCc
Confidence            88887765

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.65  E-value=3e-08  Score=71.13  Aligned_cols=79  Identities=23%  Similarity=0.360  Sum_probs=59.3

Q ss_pred             CCCccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCCc
Q 048450            1 MPRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTL   80 (133)
Q Consensus         1 l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L   80 (133)
                      +++|++|++++| .+..++. +..+++|+.|+++++. +..++     .+..+++|++|++++| .+..++ .+..+++|
T Consensus       220 ~~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~-----~~~~l~~L~~L~l~~n-~l~~~~-~~~~l~~L  289 (347)
T 4fmz_A          220 MTRLNSLKIGNN-KITDLSP-LANLSQLTWLEIGTNQ-ISDIN-----AVKDLTKLKMLNVGSN-QISDIS-VLNNLSQL  289 (347)
T ss_dssp             CTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSC-CCCCG-----GGTTCTTCCEEECCSS-CCCCCG-GGGGCTTC
T ss_pred             CCcCCEEEccCC-ccCCCcc-hhcCCCCCEEECCCCc-cCCCh-----hHhcCCCcCEEEccCC-ccCCCh-hhcCCCCC
Confidence            467889999886 5666664 7788889999998864 66664     4677888888888886 466664 45677888


Q ss_pred             cEEEEecCc
Q 048450           81 QELTIHRCP   89 (133)
Q Consensus        81 ~~L~i~~c~   89 (133)
                      +.|++++|.
T Consensus       290 ~~L~L~~n~  298 (347)
T 4fmz_A          290 NSLFLNNNQ  298 (347)
T ss_dssp             SEEECCSSC
T ss_pred             CEEECcCCc
Confidence            888888875

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.65  E-value=5.7e-08  Score=69.22  Aligned_cols=82  Identities=10%  Similarity=0.012  Sum_probs=55.0

Q ss_pred             CCCccEEeecCCCCCccCC-ccCCCCCCccEEEeccCCCCccccccccccC-CCCCCccEEeecCCCCCCccCcCCCCCC
Q 048450            1 MPRLSSLTVGSCNKLKALP-DYLLQTTALQELSICSCDLLEELPILEDRRT-TDIPRLTSLWISDCPNLKVLPDYLLQTT   78 (133)
Q Consensus         1 l~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~-~~l~~L~~L~l~~c~~l~~lp~~~~~l~   78 (133)
                      +++|++|+++++ .+..++ ..++.+++|+.|+++++. +..++..   .+ +.+++|++|+++++. ++.+|... .++
T Consensus       119 ~~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~---~~~~~l~~L~~L~L~~N~-l~~~~~~~-~l~  191 (317)
T 3o53_A          119 GQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNE-IDTVNFA---ELAASSDTLEHLNLQYNF-IYDVKGQV-VFA  191 (317)
T ss_dssp             CSSCEEEECCSS-CCCSGGGBCTGGGSSEEEEECTTSC-CCEEEGG---GGGGGTTTCCEEECTTSC-CCEEECCC-CCT
T ss_pred             cCCCCEEECCCC-CCCCccchhhhccCCCCEEECCCCC-CCcccHH---HHhhccCcCCEEECCCCc-Cccccccc-ccc
Confidence            357888888885 455554 456677888888888864 5554321   33 357888888888754 66665433 477


Q ss_pred             CccEEEEecCc
Q 048450           79 TLQELTIHRCP   89 (133)
Q Consensus        79 ~L~~L~i~~c~   89 (133)
                      +|++|+++++.
T Consensus       192 ~L~~L~Ls~N~  202 (317)
T 3o53_A          192 KLKTLDLSSNK  202 (317)
T ss_dssp             TCCEEECCSSC
T ss_pred             cCCEEECCCCc
Confidence            88888888764

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=98.64  E-value=2.4e-07  Score=66.19  Aligned_cols=78  Identities=23%  Similarity=0.338  Sum_probs=44.2

Q ss_pred             CCccEEeecCCCCCccCC-ccCCCCCCccEEEeccCCCCccc-cccccccCCCCCCccEEeecCCCCCCccCcCCCCCCC
Q 048450            2 PRLSSLTVGSCNKLKALP-DYLLQTTALQELSICSCDLLEEL-PILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTT   79 (133)
Q Consensus         2 ~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~l-p~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~   79 (133)
                      ++|++|+++++ .+..++ ..+..+++|++|+++++. +..+ |.    .++.+++|++|+++++ .++.+|..+.  ++
T Consensus        54 ~~l~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~----~~~~l~~L~~L~L~~n-~l~~l~~~~~--~~  124 (332)
T 2ft3_A           54 PDTTLLDLQNN-DISELRKDDFKGLQHLYALVLVNNK-ISKIHEK----AFSPLRKLQKLYISKN-HLVEIPPNLP--SS  124 (332)
T ss_dssp             TTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC-CCEECGG----GSTTCTTCCEEECCSS-CCCSCCSSCC--TT
T ss_pred             CCCeEEECCCC-cCCccCHhHhhCCCCCcEEECCCCc-cCccCHh----HhhCcCCCCEEECCCC-cCCccCcccc--cc
Confidence            35666666664 344443 345666667777776654 4444 33    5666666666666653 3555555443  45


Q ss_pred             ccEEEEecC
Q 048450           80 LQELTIHRC   88 (133)
Q Consensus        80 L~~L~i~~c   88 (133)
                      |++|+++++
T Consensus       125 L~~L~l~~n  133 (332)
T 2ft3_A          125 LVELRIHDN  133 (332)
T ss_dssp             CCEEECCSS
T ss_pred             CCEEECCCC
Confidence            555555554

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.62  E-value=6.4e-08  Score=73.06  Aligned_cols=35  Identities=11%  Similarity=0.181  Sum_probs=16.8

Q ss_pred             CCCccEEeecCCCCCCccCcCCCCCCCccEEEEecC
Q 048450           53 IPRLTSLWISDCPNLKVLPDYLLQTTTLQELTIHRC   88 (133)
Q Consensus        53 l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~i~~c   88 (133)
                      +++|+.|+++++ .+..+|..+..+++|+.|+++++
T Consensus       190 l~~L~~L~Ls~N-~l~~~~~~~~~l~~L~~L~Ls~N  224 (487)
T 3oja_A          190 FAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNN  224 (487)
T ss_dssp             CTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTS
T ss_pred             CCCCCEEECCCC-CCCCCCHhHcCCCCccEEEecCC
Confidence            444555555442 24444444444455555555544

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.61  E-value=1.5e-07  Score=66.43  Aligned_cols=54  Identities=24%  Similarity=0.381  Sum_probs=26.5

Q ss_pred             CCccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecC
Q 048450            2 PRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISD   63 (133)
Q Consensus         2 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~   63 (133)
                      ++|++|+++++ .+..+| .+..+++|+.|+++++. +..++     .+..+++|++|++++
T Consensus        90 ~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~L~~n~-i~~~~-----~l~~l~~L~~L~l~~  143 (291)
T 1h6t_A           90 KNLGWLFLDEN-KVKDLS-SLKDLKKLKSLSLEHNG-ISDIN-----GLVHLPQLESLYLGN  143 (291)
T ss_dssp             TTCCEEECCSS-CCCCGG-GGTTCTTCCEEECTTSC-CCCCG-----GGGGCTTCCEEECCS
T ss_pred             CCCCEEECCCC-cCCCCh-hhccCCCCCEEECCCCc-CCCCh-----hhcCCCCCCEEEccC
Confidence            45666666664 344444 35555556666655542 43332     233444444444444

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=98.61  E-value=2.2e-07  Score=66.36  Aligned_cols=59  Identities=19%  Similarity=0.238  Sum_probs=32.6

Q ss_pred             CCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccC-cCCCCCCCccEEEEecCc
Q 048450           26 TALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLP-DYLLQTTTLQELTIHRCP   89 (133)
Q Consensus        26 ~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~i~~c~   89 (133)
                      ++|+.|+++++. +..++..   .++.+++|++|+++++. +..++ ..+..+++|++|+++++.
T Consensus       192 ~~L~~L~l~~n~-l~~~~~~---~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~  251 (330)
T 1xku_A          192 PSLTELHLDGNK-ITKVDAA---SLKGLNNLAKLGLSFNS-ISAVDNGSLANTPHLRELHLNNNK  251 (330)
T ss_dssp             TTCSEEECTTSC-CCEECTG---GGTTCTTCCEEECCSSC-CCEECTTTGGGSTTCCEEECCSSC
T ss_pred             ccCCEEECCCCc-CCccCHH---HhcCCCCCCEEECCCCc-CceeChhhccCCCCCCEEECCCCc
Confidence            344444444433 3333211   55666777777776644 44444 345666777777777664

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.60  E-value=2.2e-07  Score=69.46  Aligned_cols=79  Identities=15%  Similarity=0.266  Sum_probs=52.8

Q ss_pred             CCCccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCCc
Q 048450            1 MPRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTL   80 (133)
Q Consensus         1 l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L   80 (133)
                      +++|++|+++++ .+..+|+ +..+++|++|++.++. +..++.     ++.+++|++|++++| .+..++. +..+++|
T Consensus        67 l~~L~~L~Ls~n-~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~-----~~~l~~L~~L~L~~n-~l~~~~~-~~~l~~L  136 (466)
T 1o6v_A           67 LNNLTQINFSNN-QLTDITP-LKNLTKLVDILMNNNQ-IADITP-----LANLTNLTGLTLFNN-QITDIDP-LKNLTNL  136 (466)
T ss_dssp             CTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-----GTTCTTCCEEECCSS-CCCCCGG-GTTCTTC
T ss_pred             hcCCCEEECCCC-ccCCchh-hhccccCCEEECCCCc-cccChh-----hcCCCCCCEEECCCC-CCCCChH-HcCCCCC
Confidence            356777777775 4555654 6677777777777753 555543     566777888888775 3556654 6677788


Q ss_pred             cEEEEecCc
Q 048450           81 QELTIHRCP   89 (133)
Q Consensus        81 ~~L~i~~c~   89 (133)
                      ++|++++|.
T Consensus       137 ~~L~l~~n~  145 (466)
T 1o6v_A          137 NRLELSSNT  145 (466)
T ss_dssp             SEEEEEEEE
T ss_pred             CEEECCCCc
Confidence            888877664

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=98.60  E-value=3.4e-07  Score=65.46  Aligned_cols=80  Identities=20%  Similarity=0.280  Sum_probs=64.5

Q ss_pred             CCCccEEeecCCCCCccC-CccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcC-CCCCC
Q 048450            1 MPRLSSLTVGSCNKLKAL-PDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDY-LLQTT   78 (133)
Q Consensus         1 l~~L~~L~l~~~~~l~~l-p~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~l~   78 (133)
                      +++|++|+++++ .+..+ |..++.+++|++|+++++. +..+|.    .+.  ++|++|+++++. ++.+|.. +..++
T Consensus        77 l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~----~~~--~~L~~L~l~~n~-i~~~~~~~~~~l~  147 (332)
T 2ft3_A           77 LQHLYALVLVNN-KISKIHEKAFSPLRKLQKLYISKNH-LVEIPP----NLP--SSLVELRIHDNR-IRKVPKGVFSGLR  147 (332)
T ss_dssp             CTTCCEEECCSS-CCCEECGGGSTTCTTCCEEECCSSC-CCSCCS----SCC--TTCCEEECCSSC-CCCCCSGGGSSCS
T ss_pred             CCCCcEEECCCC-ccCccCHhHhhCcCCCCEEECCCCc-CCccCc----ccc--ccCCEEECCCCc-cCccCHhHhCCCc
Confidence            468999999997 45555 6678999999999999964 778887    554  789999998854 6677654 67889


Q ss_pred             CccEEEEecCc
Q 048450           79 TLQELTIHRCP   89 (133)
Q Consensus        79 ~L~~L~i~~c~   89 (133)
                      +|+.|+++++.
T Consensus       148 ~L~~L~l~~n~  158 (332)
T 2ft3_A          148 NMNCIEMGGNP  158 (332)
T ss_dssp             SCCEEECCSCC
T ss_pred             cCCEEECCCCc
Confidence            99999998875

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.60  E-value=5.5e-08  Score=70.27  Aligned_cols=81  Identities=23%  Similarity=0.221  Sum_probs=41.0

Q ss_pred             ccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCCccEE
Q 048450            4 LSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTLQEL   83 (133)
Q Consensus         4 L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L   83 (133)
                      ++.|+++++ .++.+|..+...++|+.+.+.++..++.+|.+   .++.+++|++|+++++ .++.+|.+.  +.+|+.|
T Consensus       156 l~~L~L~~N-~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~---~f~~l~~L~~LdLs~N-~l~~lp~~~--~~~L~~L  228 (350)
T 4ay9_X          156 SVILWLNKN-GIQEIHNSAFNGTQLDELNLSDNNNLEELPND---VFHGASGPVILDISRT-RIHSLPSYG--LENLKKL  228 (350)
T ss_dssp             CEEEECCSS-CCCEECTTSSTTEEEEEEECTTCTTCCCCCTT---TTTTEECCSEEECTTS-CCCCCCSSS--CTTCCEE
T ss_pred             hhhhccccc-cccCCChhhccccchhHHhhccCCcccCCCHH---HhccCcccchhhcCCC-CcCccChhh--hccchHh
Confidence            444555542 44555544444455555555555555555542   3455566666666553 355555432  3345555


Q ss_pred             EEecCchh
Q 048450           84 TIHRCPLL   91 (133)
Q Consensus        84 ~i~~c~~l   91 (133)
                      .+.++..+
T Consensus       229 ~~l~~~~l  236 (350)
T 4ay9_X          229 RARSTYNL  236 (350)
T ss_dssp             ECTTCTTC
T ss_pred             hhccCCCc
Confidence            55444433

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.60  E-value=2.5e-07  Score=64.45  Aligned_cols=33  Identities=27%  Similarity=0.353  Sum_probs=16.0

Q ss_pred             CCccEEeecCCCCCccCCccCCCCCCccEEEeccC
Q 048450            2 PRLSSLTVGSCNKLKALPDYLLQTTALQELSICSC   36 (133)
Q Consensus         2 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c   36 (133)
                      ++|++|+++++ .+..+++ +..+++|+.|+++++
T Consensus        63 ~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L~~N   95 (263)
T 1xeu_A           63 TNLKELHLSHN-QISDLSP-LKDLTKLEELSVNRN   95 (263)
T ss_dssp             TTCCEEECCSS-CCCCCGG-GTTCSSCCEEECCSS
T ss_pred             CCCCEEECCCC-ccCCChh-hccCCCCCEEECCCC
Confidence            34555555543 3444443 445555555555553

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.59  E-value=5e-09  Score=74.81  Aligned_cols=37  Identities=35%  Similarity=0.404  Sum_probs=15.6

Q ss_pred             CCCccEEeecCCCCCC-ccCcCCCCCCCccEEEEecCc
Q 048450           53 IPRLTSLWISDCPNLK-VLPDYLLQTTTLQELTIHRCP   89 (133)
Q Consensus        53 l~~L~~L~l~~c~~l~-~lp~~~~~l~~L~~L~i~~c~   89 (133)
                      +++|++|++++|..++ ..+..+..+++|++|++++|.
T Consensus       221 ~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~  258 (336)
T 2ast_B          221 CPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY  258 (336)
T ss_dssp             CTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred             CCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC
Confidence            4444444444443222 223333444445555554443

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.59  E-value=2.6e-07  Score=64.41  Aligned_cols=99  Identities=20%  Similarity=0.271  Sum_probs=64.2

Q ss_pred             CCCccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCCc
Q 048450            1 MPRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTL   80 (133)
Q Consensus         1 l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L   80 (133)
                      +++|++|+++++ .+..+|.. .. ++|+.|+++++. +..++     .++.+++|++|+++++ .++.++ .+..+++|
T Consensus        84 l~~L~~L~L~~N-~l~~l~~~-~~-~~L~~L~L~~N~-l~~~~-----~l~~l~~L~~L~Ls~N-~i~~~~-~l~~l~~L  152 (263)
T 1xeu_A           84 LTKLEELSVNRN-RLKNLNGI-PS-ACLSRLFLDNNE-LRDTD-----SLIHLKNLEILSIRNN-KLKSIV-MLGFLSKL  152 (263)
T ss_dssp             CSSCCEEECCSS-CCSCCTTC-CC-SSCCEEECCSSC-CSBSG-----GGTTCTTCCEEECTTS-CCCBCG-GGGGCTTC
T ss_pred             CCCCCEEECCCC-ccCCcCcc-cc-CcccEEEccCCc-cCCCh-----hhcCcccccEEECCCC-cCCCCh-HHccCCCC
Confidence            467888888885 66667643 23 788888888864 66664     4677888888888774 466665 46677788


Q ss_pred             cEEEEecCchhHHhhcCCCCCCCcccCCCCceEEcCc
Q 048450           81 QELTIHRCPLLENRYREGKGEDWHKISHIPHIKWSIT  117 (133)
Q Consensus        81 ~~L~i~~c~~l~~~~~~~~~~~~~~i~~l~~l~~~~~  117 (133)
                      +.|+++++. +...      ..+..+.++..+.+.++
T Consensus       153 ~~L~L~~N~-i~~~------~~l~~l~~L~~L~l~~N  182 (263)
T 1xeu_A          153 EVLDLHGNE-ITNT------GGLTRLKKVNWIDLTGQ  182 (263)
T ss_dssp             CEEECTTSC-CCBC------TTSTTCCCCCEEEEEEE
T ss_pred             CEEECCCCc-Ccch------HHhccCCCCCEEeCCCC
Confidence            888887765 1110      22334555555555543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.58  E-value=1.9e-07  Score=65.96  Aligned_cols=78  Identities=19%  Similarity=0.254  Sum_probs=47.8

Q ss_pred             CCccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCCcc
Q 048450            2 PRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTLQ   81 (133)
Q Consensus         2 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~   81 (133)
                      ++|++|+++++ .+..+++ +..+++|+.|+++++. +..++     .++.+++|++|+++++. +..++ .+..+++|+
T Consensus        68 ~~L~~L~L~~n-~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~-----~l~~l~~L~~L~L~~n~-i~~~~-~l~~l~~L~  137 (291)
T 1h6t_A           68 PNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLDENK-VKDLS-----SLKDLKKLKSLSLEHNG-ISDIN-GLVHLPQLE  137 (291)
T ss_dssp             TTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSC-CCCGG-----GGTTCTTCCEEECTTSC-CCCCG-GGGGCTTCC
T ss_pred             CCCCEEEccCC-ccCCCcc-cccCCCCCEEECCCCc-CCCCh-----hhccCCCCCEEECCCCc-CCCCh-hhcCCCCCC
Confidence            55666666664 4455554 5666677777776653 55554     36667777777777643 55553 355666777


Q ss_pred             EEEEecCc
Q 048450           82 ELTIHRCP   89 (133)
Q Consensus        82 ~L~i~~c~   89 (133)
                      .|+++++.
T Consensus       138 ~L~l~~n~  145 (291)
T 1h6t_A          138 SLYLGNNK  145 (291)
T ss_dssp             EEECCSSC
T ss_pred             EEEccCCc
Confidence            77776653

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.58  E-value=1.7e-07  Score=66.61  Aligned_cols=33  Identities=15%  Similarity=0.319  Sum_probs=16.9

Q ss_pred             CCccEEeecCCCCCccCCccCCCCCCccEEEeccC
Q 048450            2 PRLSSLTVGSCNKLKALPDYLLQTTALQELSICSC   36 (133)
Q Consensus         2 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c   36 (133)
                      ++|++|+++++ .+..++ .+..+++|+.|+++++
T Consensus        85 ~~L~~L~L~~n-~l~~~~-~~~~l~~L~~L~l~~n  117 (308)
T 1h6u_A           85 TKITELELSGN-PLKNVS-AIAGLQSIKTLDLTST  117 (308)
T ss_dssp             CSCCEEECCSC-CCSCCG-GGTTCTTCCEEECTTS
T ss_pred             CCCCEEEccCC-cCCCch-hhcCCCCCCEEECCCC
Confidence            45566666554 344443 3445555555555554

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.56  E-value=7.4e-09  Score=73.93  Aligned_cols=83  Identities=18%  Similarity=0.302  Sum_probs=37.4

Q ss_pred             CCccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCcc--ccccccccCCCCCCccEEeecCCCCCCc--cCcCCCCC
Q 048450            2 PRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEE--LPILEDRRTTDIPRLTSLWISDCPNLKV--LPDYLLQT   77 (133)
Q Consensus         2 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~--lp~~~~~~~~~l~~L~~L~l~~c~~l~~--lp~~~~~l   77 (133)
                      ++|++|++++|......+..+..+++|+.|++++|..+..  ++.    .++.+++|++|++++|..+..  ++..+..+
T Consensus       118 ~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~----~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l  193 (336)
T 2ast_B          118 SKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQT----LLSSCSRLDELNLSWCFDFTEKHVQVAVAHV  193 (336)
T ss_dssp             CCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHH----HHHHCTTCCEEECCCCTTCCHHHHHHHHHHS
T ss_pred             CCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHH----HHhcCCCCCEEcCCCCCCcChHHHHHHHHhc
Confidence            3455555555432222333344455555555555533331  333    233455555555555433332  33333444


Q ss_pred             C-CccEEEEecC
Q 048450           78 T-TLQELTIHRC   88 (133)
Q Consensus        78 ~-~L~~L~i~~c   88 (133)
                      + +|++|++++|
T Consensus       194 ~~~L~~L~l~~~  205 (336)
T 2ast_B          194 SETITQLNLSGY  205 (336)
T ss_dssp             CTTCCEEECCSC
T ss_pred             ccCCCEEEeCCC
Confidence            4 5555555555

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.56  E-value=2.5e-07  Score=71.69  Aligned_cols=77  Identities=19%  Similarity=0.264  Sum_probs=36.8

Q ss_pred             CCccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCCcc
Q 048450            2 PRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTLQ   81 (133)
Q Consensus         2 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~   81 (133)
                      ++|+.|+|+++ .+..+++ +..+++|+.|++++|. +..+|     .+..+++|+.|+++++. +..++ .+..+++|+
T Consensus        65 ~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~-----~l~~l~~L~~L~Ls~N~-l~~l~-~l~~l~~L~  134 (605)
T 1m9s_A           65 PNVTKLFLNGN-KLTDIKP-LTNLKNLGWLFLDENK-IKDLS-----SLKDLKKLKSLSLEHNG-ISDIN-GLVHLPQLE  134 (605)
T ss_dssp             TTCCEEECTTS-CCCCCGG-GGGCTTCCEEECCSSC-CCCCT-----TSTTCTTCCEEECTTSC-CCCCG-GGGGCTTCS
T ss_pred             CCCCEEEeeCC-CCCCChh-hccCCCCCEEECcCCC-CCCCh-----hhccCCCCCEEEecCCC-CCCCc-cccCCCccC
Confidence            45566666554 3444443 4555555555555542 44433     24445555555555432 33332 233444455


Q ss_pred             EEEEecC
Q 048450           82 ELTIHRC   88 (133)
Q Consensus        82 ~L~i~~c   88 (133)
                      .|++++|
T Consensus       135 ~L~Ls~N  141 (605)
T 1m9s_A          135 SLYLGNN  141 (605)
T ss_dssp             EEECCSS
T ss_pred             EEECCCC
Confidence            5544443

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=98.54  E-value=4.5e-07  Score=70.40  Aligned_cols=84  Identities=23%  Similarity=0.196  Sum_probs=66.7

Q ss_pred             CCCccEEeecCCCCCccCCc-cCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCC
Q 048450            1 MPRLSSLTVGSCNKLKALPD-YLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTT   79 (133)
Q Consensus         1 l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~   79 (133)
                      +++|++|+++++ .+..+|. .++.+++|++|+++++. +..++..   .++.+++|++|+++++......|..+.++++
T Consensus        72 l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~---~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  146 (680)
T 1ziw_A           72 LPMLKVLNLQHN-ELSQLSDKTFAFCTNLTELHLMSNS-IQKIKNN---PFVKQKNLITLDLSHNGLSSTKLGTQVQLEN  146 (680)
T ss_dssp             CTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSC-CCCCCSC---TTTTCTTCCEEECCSSCCSCCCCCSSSCCTT
T ss_pred             ccCcCEEECCCC-ccCccChhhhccCCCCCEEECCCCc-cCccChh---HccccCCCCEEECCCCcccccCchhhccccc
Confidence            468999999986 6777885 47899999999999875 6677642   6888999999999987654445666778889


Q ss_pred             ccEEEEecCc
Q 048450           80 LQELTIHRCP   89 (133)
Q Consensus        80 L~~L~i~~c~   89 (133)
                      |++|+++++.
T Consensus       147 L~~L~L~~n~  156 (680)
T 1ziw_A          147 LQELLLSNNK  156 (680)
T ss_dssp             CCEEECCSSC
T ss_pred             CCEEEccCCc
Confidence            9999988763

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.54  E-value=1.5e-07  Score=71.09  Aligned_cols=82  Identities=12%  Similarity=0.094  Sum_probs=62.5

Q ss_pred             CCccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCCcc
Q 048450            2 PRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTLQ   81 (133)
Q Consensus         2 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~   81 (133)
                      ++|++|+++++ .+..+| ....+++|+.|+++++. +..+|.    .++.+++|+.|+++++ .+..+|..+..+++|+
T Consensus       169 ~~L~~L~Ls~N-~l~~~~-~~~~l~~L~~L~Ls~N~-l~~~~~----~~~~l~~L~~L~Ls~N-~l~~lp~~l~~l~~L~  240 (487)
T 3oja_A          169 DTLEHLNLQYN-FIYDVK-GQVVFAKLKTLDLSSNK-LAFMGP----EFQSAAGVTWISLRNN-KLVLIEKALRFSQNLE  240 (487)
T ss_dssp             TTCCEEECTTS-CCCEEE-CCCCCTTCCEEECCSSC-CCEECG----GGGGGTTCSEEECTTS-CCCEECTTCCCCTTCC
T ss_pred             CcccEEecCCC-cccccc-ccccCCCCCEEECCCCC-CCCCCH----hHcCCCCccEEEecCC-cCcccchhhccCCCCC
Confidence            55666666664 344444 23357788888888754 777877    7888999999999985 5778999998999999


Q ss_pred             EEEEecCchh
Q 048450           82 ELTIHRCPLL   91 (133)
Q Consensus        82 ~L~i~~c~~l   91 (133)
                      .|++++++..
T Consensus       241 ~L~l~~N~l~  250 (487)
T 3oja_A          241 HFDLRGNGFH  250 (487)
T ss_dssp             EEECTTCCBC
T ss_pred             EEEcCCCCCc
Confidence            9999987643

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.53  E-value=6.7e-07  Score=63.41  Aligned_cols=88  Identities=18%  Similarity=0.166  Sum_probs=59.2

Q ss_pred             CCccEEeecCCCCCccCCccC--CCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCC
Q 048450            2 PRLSSLTVGSCNKLKALPDYL--LQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTT   79 (133)
Q Consensus         2 ~~L~~L~l~~~~~l~~lp~~~--~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~   79 (133)
                      ++|++|+++++......|..+  ..+++|+.|+++++.-....+.-....+..+++|++|+++++......|..+..+++
T Consensus        91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~  170 (310)
T 4glp_A           91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA  170 (310)
T ss_dssp             SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred             CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence            468899999875555566555  788889999998875333222100003446888888888886643333456778888


Q ss_pred             ccEEEEecCc
Q 048450           80 LQELTIHRCP   89 (133)
Q Consensus        80 L~~L~i~~c~   89 (133)
                      |++|+++++.
T Consensus       171 L~~L~Ls~N~  180 (310)
T 4glp_A          171 LTSLDLSDNP  180 (310)
T ss_dssp             CCEEECCSCT
T ss_pred             CCEEECCCCC
Confidence            8888888876

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.51  E-value=3.5e-07  Score=70.90  Aligned_cols=55  Identities=24%  Similarity=0.397  Sum_probs=28.1

Q ss_pred             CCCccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecC
Q 048450            1 MPRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISD   63 (133)
Q Consensus         1 l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~   63 (133)
                      +++|+.|+++++ .+..+| .+..+++|+.|+++++. +..++     .+..+++|+.|++++
T Consensus        86 l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L~Ls~N~-l~~l~-----~l~~l~~L~~L~Ls~  140 (605)
T 1m9s_A           86 LKNLGWLFLDEN-KIKDLS-SLKDLKKLKSLSLEHNG-ISDIN-----GLVHLPQLESLYLGN  140 (605)
T ss_dssp             CTTCCEEECCSS-CCCCCT-TSTTCTTCCEEECTTSC-CCCCG-----GGGGCTTCSEEECCS
T ss_pred             CCCCCEEECcCC-CCCCCh-hhccCCCCCEEEecCCC-CCCCc-----cccCCCccCEEECCC
Confidence            356666666664 444444 45556666666665543 43332     233444444444444

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.45  E-value=1.8e-06  Score=64.65  Aligned_cols=33  Identities=24%  Similarity=0.295  Sum_probs=19.9

Q ss_pred             CCCccEEeecCCCCCccCCccCCCCCCccEEEeccC
Q 048450            1 MPRLSSLTVGSCNKLKALPDYLLQTTALQELSICSC   36 (133)
Q Consensus         1 l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c   36 (133)
                      +++|++|+++++ .+..+|  ++.+++|+.|+++++
T Consensus       105 l~~L~~L~L~~N-~l~~l~--~~~l~~L~~L~l~~N  137 (457)
T 3bz5_A          105 LTKLTYLNCDTN-KLTKLD--VSQNPLLTYLNCARN  137 (457)
T ss_dssp             CTTCCEEECCSS-CCSCCC--CTTCTTCCEEECTTS
T ss_pred             CCcCCEEECCCC-cCCeec--CCCCCcCCEEECCCC
Confidence            356777777764 444454  556666666666664

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.45  E-value=4.6e-07  Score=64.25  Aligned_cols=103  Identities=14%  Similarity=0.184  Sum_probs=75.1

Q ss_pred             CCCccEEeecCCCCCccCCcc----CCCCCCccEEEeccCCCCccc-cccccccCCCC---CCccEEeecCCCCCCccCc
Q 048450            1 MPRLSSLTVGSCNKLKALPDY----LLQTTALQELSICSCDLLEEL-PILEDRRTTDI---PRLTSLWISDCPNLKVLPD   72 (133)
Q Consensus         1 l~~L~~L~l~~~~~l~~lp~~----~~~l~~L~~L~l~~c~~l~~l-p~~~~~~~~~l---~~L~~L~l~~c~~l~~lp~   72 (133)
                      +++|++|++++| .+..++..    ++.+++|+.|+++++. +..+ |.    .++.+   ++|++|+++++ .++.+|.
T Consensus       196 l~~L~~L~Ls~N-~l~~l~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~p~----~~~~~~~~~~L~~L~Ls~N-~l~~lp~  268 (310)
T 4glp_A          196 FPAIQNLALRNT-GMETPTGVCAALAAAGVQPHSLDLSHNS-LRATVNP----SAPRCMWSSALNSLNLSFA-GLEQVPK  268 (310)
T ss_dssp             SCCCCSCBCCSS-CCCCHHHHHHHHHHHTCCCSSEECTTSC-CCCCCCS----CCSSCCCCTTCCCEECCSS-CCCSCCS
T ss_pred             CCCCCEEECCCC-CCCchHHHHHHHHhcCCCCCEEECCCCC-CCccchh----hHHhccCcCcCCEEECCCC-CCCchhh
Confidence            468999999996 56655532    4678999999999976 5554 66    56655   69999999885 5778998


Q ss_pred             CCCCCCCccEEEEecCchhHHhhcCCCCCCCcccCCCCceEEcCccc
Q 048450           73 YLLQTTTLQELTIHRCPLLENRYREGKGEDWHKISHIPHIKWSITRW  119 (133)
Q Consensus        73 ~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~  119 (133)
                      .+.  ++|+.|+++++. +..     . +....++++..|.+.+++.
T Consensus       269 ~~~--~~L~~L~Ls~N~-l~~-----~-~~~~~l~~L~~L~L~~N~l  306 (310)
T 4glp_A          269 GLP--AKLRVLDLSSNR-LNR-----A-PQPDELPEVDNLTLDGNPF  306 (310)
T ss_dssp             CCC--SCCSCEECCSCC-CCS-----C-CCTTSCCCCSCEECSSTTT
T ss_pred             hhc--CCCCEEECCCCc-CCC-----C-chhhhCCCccEEECcCCCC
Confidence            775  799999999876 221     1 1234567778888776643

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.44  E-value=2e-06  Score=64.37  Aligned_cols=37  Identities=22%  Similarity=0.100  Sum_probs=25.2

Q ss_pred             CCCCCCccEEeecCCCCCCccCcCCCCCCCccEEEEecCc
Q 048450           50 TTDIPRLTSLWISDCPNLKVLPDYLLQTTTLQELTIHRCP   89 (133)
Q Consensus        50 ~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~i~~c~   89 (133)
                      ++.+++|++|+++++ .+..+|  +..+++|+.|+++++.
T Consensus       208 l~~l~~L~~L~Ls~N-~l~~ip--~~~l~~L~~L~l~~N~  244 (457)
T 3bz5_A          208 LNQNIQLTFLDCSSN-KLTEID--VTPLTQLTYFDCSVNP  244 (457)
T ss_dssp             CTTCTTCSEEECCSS-CCSCCC--CTTCTTCSEEECCSSC
T ss_pred             cccCCCCCEEECcCC-cccccC--ccccCCCCEEEeeCCc
Confidence            455677777777764 355666  5667777888777664

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=98.44  E-value=1.7e-07  Score=66.57  Aligned_cols=83  Identities=27%  Similarity=0.331  Sum_probs=46.7

Q ss_pred             CCccEEeecCCCCCccCCccCCCC-----CCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCc--cCcCC
Q 048450            2 PRLSSLTVGSCNKLKALPDYLLQT-----TALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKV--LPDYL   74 (133)
Q Consensus         2 ~~L~~L~l~~~~~l~~lp~~~~~l-----~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~--lp~~~   74 (133)
                      ++|++|+++++ .+..+|..++.+     ++|++|+++++. +..++..   .++.+++|++|+++++...+.  +|..+
T Consensus       121 ~~L~~L~Ls~N-~l~~~~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~~---~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  195 (312)
T 1wwl_A          121 PDLNILNLRNV-SWATRDAWLAELQQWLKPGLKVLSIAQAH-SLNFSCE---QVRVFPALSTLDLSDNPELGERGLISAL  195 (312)
T ss_dssp             CCCSEEEEESC-BCSSSSSHHHHHHTTCCTTCCEEEEESCS-CCCCCTT---TCCCCSSCCEEECCSCTTCHHHHHHHHS
T ss_pred             CCccEEEccCC-CCcchhHHHHHHHHhhcCCCcEEEeeCCC-CccchHH---HhccCCCCCEEECCCCCcCcchHHHHHH
Confidence            56677777764 444445444444     667777776654 4444421   566666777777766543332  22222


Q ss_pred             --CCCCCccEEEEecCc
Q 048450           75 --LQTTTLQELTIHRCP   89 (133)
Q Consensus        75 --~~l~~L~~L~i~~c~   89 (133)
                        ..+++|++|+++++.
T Consensus       196 ~~~~l~~L~~L~L~~N~  212 (312)
T 1wwl_A          196 CPLKFPTLQVLALRNAG  212 (312)
T ss_dssp             CTTSCTTCCEEECTTSC
T ss_pred             HhccCCCCCEEECCCCc
Confidence              455666666666553

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.35  E-value=1.6e-06  Score=64.79  Aligned_cols=12  Identities=25%  Similarity=0.174  Sum_probs=5.2

Q ss_pred             CCCCccEEeecC
Q 048450           52 DIPRLTSLWISD   63 (133)
Q Consensus        52 ~l~~L~~L~l~~   63 (133)
                      .+++|+.|++++
T Consensus       307 ~l~~L~~L~L~~  318 (466)
T 1o6v_A          307 NLKNLTYLTLYF  318 (466)
T ss_dssp             GCTTCSEEECCS
T ss_pred             CCCCCCEEECcC
Confidence            344444444444

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.24  E-value=3.1e-06  Score=65.85  Aligned_cols=74  Identities=27%  Similarity=0.405  Sum_probs=39.9

Q ss_pred             CccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCCccE
Q 048450            3 RLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTLQE   82 (133)
Q Consensus         3 ~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~   82 (133)
                      +|++|+++++ .+..+|   ..+++|+.|+++++ .+..+|.       .+++|+.|++++| .+..+|..+.++++|+.
T Consensus       222 ~L~~L~Ls~N-~L~~lp---~~l~~L~~L~Ls~N-~L~~lp~-------~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~  288 (622)
T 3g06_A          222 GLKELIVSGN-RLTSLP---VLPSELKELMVSGN-RLTSLPM-------LPSGLLSLSVYRN-QLTRLPESLIHLSSETT  288 (622)
T ss_dssp             TCCEEECCSS-CCSCCC---CCCTTCCEEECCSS-CCSCCCC-------CCTTCCEEECCSS-CCCSCCGGGGGSCTTCE
T ss_pred             CCCEEEccCC-ccCcCC---CCCCcCcEEECCCC-CCCcCCc-------ccccCcEEeCCCC-CCCcCCHHHhhccccCE
Confidence            3444444442 333343   23345555555553 2444443       3456666766664 35566666666677777


Q ss_pred             EEEecCc
Q 048450           83 LTIHRCP   89 (133)
Q Consensus        83 L~i~~c~   89 (133)
                      |++++++
T Consensus       289 L~L~~N~  295 (622)
T 3g06_A          289 VNLEGNP  295 (622)
T ss_dssp             EECCSCC
T ss_pred             EEecCCC
Confidence            7777664

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=98.22  E-value=5.7e-06  Score=61.89  Aligned_cols=76  Identities=25%  Similarity=0.314  Sum_probs=48.1

Q ss_pred             CCccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCCcc
Q 048450            2 PRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTLQ   81 (133)
Q Consensus         2 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~   81 (133)
                      ++|++|+++++ .+..+| .++.+++|++|+++++. ++.+|.    .   +++|++|+++++ .+..+| .+..+++|+
T Consensus       131 ~~L~~L~L~~n-~l~~lp-~~~~l~~L~~L~l~~N~-l~~lp~----~---~~~L~~L~L~~n-~l~~l~-~~~~l~~L~  198 (454)
T 1jl5_A          131 PLLEYLGVSNN-QLEKLP-ELQNSSFLKIIDVDNNS-LKKLPD----L---PPSLEFIAAGNN-QLEELP-ELQNLPFLT  198 (454)
T ss_dssp             TTCCEEECCSS-CCSSCC-CCTTCTTCCEEECCSSC-CSCCCC----C---CTTCCEEECCSS-CCSSCC-CCTTCTTCC
T ss_pred             CCCCEEECcCC-CCCCCc-ccCCCCCCCEEECCCCc-CcccCC----C---cccccEEECcCC-cCCcCc-cccCCCCCC
Confidence            36777777775 455577 57777788888887753 656665    2   246666666664 355565 455666666


Q ss_pred             EEEEecCc
Q 048450           82 ELTIHRCP   89 (133)
Q Consensus        82 ~L~i~~c~   89 (133)
                      +|+++++.
T Consensus       199 ~L~l~~N~  206 (454)
T 1jl5_A          199 AIYADNNS  206 (454)
T ss_dssp             EEECCSSC
T ss_pred             EEECCCCc
Confidence            66666553

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.21  E-value=5.1e-09  Score=69.96  Aligned_cols=78  Identities=17%  Similarity=0.195  Sum_probs=38.9

Q ss_pred             CCccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCCcc
Q 048450            2 PRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTLQ   81 (133)
Q Consensus         2 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~   81 (133)
                      ++|++|+++++ .+..+| .+..+++|+.|+++++. +..+|.    .++.+++|++|+++++ .+..+| .+..+++|+
T Consensus        48 ~~L~~L~ls~n-~l~~l~-~~~~l~~L~~L~l~~n~-l~~l~~----~~~~~~~L~~L~L~~N-~l~~l~-~~~~l~~L~  118 (198)
T 1ds9_A           48 KACKHLALSTN-NIEKIS-SLSGMENLRILSLGRNL-IKKIEN----LDAVADTLEELWISYN-QIASLS-GIEKLVNLR  118 (198)
T ss_dssp             TTCSEEECSEE-EESCCC-CHHHHTTCCEEEEEEEE-ECSCSS----HHHHHHHCSEEEEEEE-ECCCHH-HHHHHHHSS
T ss_pred             CCCCEEECCCC-CCcccc-ccccCCCCCEEECCCCC-cccccc----hhhcCCcCCEEECcCC-cCCcCC-ccccCCCCC
Confidence            45666666654 344455 55556666666666543 445554    3334455555555543 233333 233334444


Q ss_pred             EEEEecC
Q 048450           82 ELTIHRC   88 (133)
Q Consensus        82 ~L~i~~c   88 (133)
                      .|+++++
T Consensus       119 ~L~l~~N  125 (198)
T 1ds9_A          119 VLYMSNN  125 (198)
T ss_dssp             EEEESEE
T ss_pred             EEECCCC
Confidence            4444443

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.17  E-value=2.5e-05  Score=60.81  Aligned_cols=36  Identities=25%  Similarity=0.505  Sum_probs=18.4

Q ss_pred             CccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCcccc
Q 048450            3 RLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELP   43 (133)
Q Consensus         3 ~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp   43 (133)
                      +|++|+++++ .+..+|.   .+++|+.|+++++. ++.+|
T Consensus        62 ~L~~L~L~~N-~l~~lp~---~l~~L~~L~Ls~N~-l~~lp   97 (622)
T 3g06_A           62 HITTLVIPDN-NLTSLPA---LPPELRTLEVSGNQ-LTSLP   97 (622)
T ss_dssp             TCSEEEECSC-CCSCCCC---CCTTCCEEEECSCC-CSCCC
T ss_pred             CCcEEEecCC-CCCCCCC---cCCCCCEEEcCCCc-CCcCC
Confidence            4555666554 4445553   34555555555543 44444

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.15  E-value=1.5e-08  Score=67.65  Aligned_cols=82  Identities=22%  Similarity=0.296  Sum_probs=66.6

Q ss_pred             CCCccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCc--CCCCCC
Q 048450            1 MPRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPD--YLLQTT   78 (133)
Q Consensus         1 l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~--~~~~l~   78 (133)
                      +++|++|+++++ .+..+|..+..+++|+.|+++++ .+..+|.     ++.+++|++|+++++ .+..+|.  .+..++
T Consensus        69 l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L~~N-~l~~l~~-----~~~l~~L~~L~l~~N-~i~~~~~~~~l~~l~  140 (198)
T 1ds9_A           69 MENLRILSLGRN-LIKKIENLDAVADTLEELWISYN-QIASLSG-----IEKLVNLRVLYMSNN-KITNWGEIDKLAALD  140 (198)
T ss_dssp             HTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEEEEE-ECCCHHH-----HHHHHHSSEEEESEE-ECCCHHHHHHHTTTT
T ss_pred             CCCCCEEECCCC-CcccccchhhcCCcCCEEECcCC-cCCcCCc-----cccCCCCCEEECCCC-cCCchhHHHHHhcCC
Confidence            368999999996 67788877777899999999997 4777763     667899999999985 4666654  577889


Q ss_pred             CccEEEEecCch
Q 048450           79 TLQELTIHRCPL   90 (133)
Q Consensus        79 ~L~~L~i~~c~~   90 (133)
                      +|++|++++++-
T Consensus       141 ~L~~L~l~~N~l  152 (198)
T 1ds9_A          141 KLEDLLLAGNPL  152 (198)
T ss_dssp             TCSEEEECSCHH
T ss_pred             CCCEEEecCCcc
Confidence            999999999863

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.12  E-value=7.1e-07  Score=59.00  Aligned_cols=66  Identities=21%  Similarity=0.376  Sum_probs=50.5

Q ss_pred             CCCccEEeecCCCCCccCC-ccCCCC----CCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCc
Q 048450            1 MPRLSSLTVGSCNKLKALP-DYLLQT----TALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKV   69 (133)
Q Consensus         1 l~~L~~L~l~~~~~l~~lp-~~~~~l----~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~   69 (133)
                      +++|++|++++|..+++-- ..+..+    ++|+.|++++|++++.-...   .+..+++|++|++++|+.++.
T Consensus        84 ~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~---~L~~~~~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A           84 LQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGII---ALHHFRNLKYLFLSDLPGVKE  154 (176)
T ss_dssp             CSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH---HGGGCTTCCEEEEESCTTCCC
T ss_pred             CCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHH---HHhcCCCCCEEECCCCCCCCc
Confidence            5789999999998776532 223343    37999999999988764322   566799999999999998765

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.10  E-value=6.6e-06  Score=63.44  Aligned_cols=32  Identities=9%  Similarity=0.235  Sum_probs=19.1

Q ss_pred             cEEeecCCCCCCccCcCCCCCCCccEEEEecCc
Q 048450           57 TSLWISDCPNLKVLPDYLLQTTTLQELTIHRCP   89 (133)
Q Consensus        57 ~~L~l~~c~~l~~lp~~~~~l~~L~~L~i~~c~   89 (133)
                      +.|+++++ .++.+|..+..+++|+.|++++++
T Consensus       210 ~~L~Ls~N-~l~~lp~~l~~l~~L~~L~L~~N~  241 (571)
T 3cvr_A          210 IFFRCREN-RITHIPENILSLDPTCTIILEDNP  241 (571)
T ss_dssp             EEEECCSS-CCCCCCGGGGGSCTTEEEECCSSS
T ss_pred             eEEecCCC-cceecCHHHhcCCCCCEEEeeCCc
Confidence            66666553 355566655556666666666654

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=98.07  E-value=1.9e-05  Score=59.11  Aligned_cols=74  Identities=23%  Similarity=0.257  Sum_probs=34.6

Q ss_pred             CccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCCccE
Q 048450            3 RLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTLQE   82 (133)
Q Consensus         3 ~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~   82 (133)
                      +|++|+++++ .+..+| .++.+++|+.|+++++. +..+|.    .   .++|++|+++++ .+..+|. +..+++|++
T Consensus       174 ~L~~L~L~~n-~l~~l~-~~~~l~~L~~L~l~~N~-l~~l~~----~---~~~L~~L~l~~n-~l~~lp~-~~~l~~L~~  241 (454)
T 1jl5_A          174 SLEFIAAGNN-QLEELP-ELQNLPFLTAIYADNNS-LKKLPD----L---PLSLESIVAGNN-ILEELPE-LQNLPFLTT  241 (454)
T ss_dssp             TCCEEECCSS-CCSSCC-CCTTCTTCCEEECCSSC-CSSCCC----C---CTTCCEEECCSS-CCSSCCC-CTTCTTCCE
T ss_pred             cccEEECcCC-cCCcCc-cccCCCCCCEEECCCCc-CCcCCC----C---cCcccEEECcCC-cCCcccc-cCCCCCCCE
Confidence            3444444443 333344 34555555555555543 333433    1   134555555543 2345552 445555566


Q ss_pred             EEEecC
Q 048450           83 LTIHRC   88 (133)
Q Consensus        83 L~i~~c   88 (133)
                      |+++++
T Consensus       242 L~l~~N  247 (454)
T 1jl5_A          242 IYADNN  247 (454)
T ss_dssp             EECCSS
T ss_pred             EECCCC
Confidence            655554

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.03  E-value=1.8e-05  Score=61.02  Aligned_cols=70  Identities=26%  Similarity=0.354  Sum_probs=37.9

Q ss_pred             CccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCCccE
Q 048450            3 RLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTLQE   82 (133)
Q Consensus         3 ~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~   82 (133)
                      +|++|+++++ .+..+|.   .+++|+.|+++++. +..+|.       .+++|++|+++++ .++.+|. +.  ++|+.
T Consensus       121 ~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~-------~l~~L~~L~Ls~N-~L~~lp~-l~--~~L~~  184 (571)
T 3cvr_A          121 SLKHLDVDNN-QLTMLPE---LPALLEYINADNNQ-LTMLPE-------LPTSLEVLSVRNN-QLTFLPE-LP--ESLEA  184 (571)
T ss_dssp             TCCEEECCSS-CCSCCCC---CCTTCCEEECCSSC-CSCCCC-------CCTTCCEEECCSS-CCSCCCC-CC--TTCCE
T ss_pred             CCCEEECCCC-cCCCCCC---cCccccEEeCCCCc-cCcCCC-------cCCCcCEEECCCC-CCCCcch-hh--CCCCE
Confidence            3455555553 3444553   45566666666643 444543       2456666666664 3555665 43  56666


Q ss_pred             EEEecC
Q 048450           83 LTIHRC   88 (133)
Q Consensus        83 L~i~~c   88 (133)
                      |+++++
T Consensus       185 L~Ls~N  190 (571)
T 3cvr_A          185 LDVSTN  190 (571)
T ss_dssp             EECCSS
T ss_pred             EECcCC
Confidence            666655

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=97.97  E-value=7e-07  Score=65.04  Aligned_cols=82  Identities=22%  Similarity=0.291  Sum_probs=55.8

Q ss_pred             CCCccEEeecCCCCCc------cCCccCCCCCCccEEEeccCCCC-----ccccccccccCCCCCCccEEeecCCCCCCc
Q 048450            1 MPRLSSLTVGSCNKLK------ALPDYLLQTTALQELSICSCDLL-----EELPILEDRRTTDIPRLTSLWISDCPNLKV   69 (133)
Q Consensus         1 l~~L~~L~l~~~~~l~------~lp~~~~~l~~L~~L~l~~c~~l-----~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~   69 (133)
                      +++|++|++++| .+.      -+|..+..+++|+.|++++|. +     ..+|.    .+..+++|++|++++|. ++.
T Consensus       186 ~~~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~-l~~~g~~~l~~----~l~~~~~L~~L~L~~n~-i~~  258 (386)
T 2ca6_A          186 HRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSSALAI----ALKSWPNLRELGLNDCL-LSA  258 (386)
T ss_dssp             CTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHHHHHHHH----HGGGCTTCCEEECTTCC-CCH
T ss_pred             CCCcCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCCC-CCcHHHHHHHH----HHccCCCcCEEECCCCC-Cch
Confidence            357888888886 444      122366778888888888865 4     55666    66778888888888765 433


Q ss_pred             -----cCcCC--CCCCCccEEEEecCc
Q 048450           70 -----LPDYL--LQTTTLQELTIHRCP   89 (133)
Q Consensus        70 -----lp~~~--~~l~~L~~L~i~~c~   89 (133)
                           +|..+  ..+++|+.|++++|.
T Consensus       259 ~~~~~l~~~l~~~~~~~L~~L~L~~n~  285 (386)
T 2ca6_A          259 RGAAAVVDAFSKLENIGLQTLRLQYNE  285 (386)
T ss_dssp             HHHHHHHHHHHTCSSCCCCEEECCSSC
T ss_pred             hhHHHHHHHHhhccCCCeEEEECcCCc
Confidence                 34444  336788888888775

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=97.87  E-value=3e-06  Score=61.71  Aligned_cols=83  Identities=18%  Similarity=0.173  Sum_probs=61.2

Q ss_pred             CCccEEeecCCCCC-ccCC---ccCCCCCCccEEEeccCCCCc------cccccccccCCCCCCccEEeecCCCCC----
Q 048450            2 PRLSSLTVGSCNKL-KALP---DYLLQTTALQELSICSCDLLE------ELPILEDRRTTDIPRLTSLWISDCPNL----   67 (133)
Q Consensus         2 ~~L~~L~l~~~~~l-~~lp---~~~~~l~~L~~L~l~~c~~l~------~lp~~~~~~~~~l~~L~~L~l~~c~~l----   67 (133)
                      ++|++|++++|.-- ..++   ..+..+++|+.|++++|. +.      -++.    .+..+++|+.|++++|..-    
T Consensus       159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~g~~~l~~~----~l~~~~~L~~L~Ls~n~l~~~g~  233 (386)
T 2ca6_A          159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNG-IRPEGIEHLLLE----GLAYCQELKVLDLQDNTFTHLGS  233 (386)
T ss_dssp             CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSC-CCHHHHHHHHHT----TGGGCTTCCEEECCSSCCHHHHH
T ss_pred             CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCC-CCHhHHHHHHHH----HhhcCCCccEEECcCCCCCcHHH
Confidence            68899999987432 2344   345678899999999874 54      2343    4667889999999886631    


Q ss_pred             CccCcCCCCCCCccEEEEecCc
Q 048450           68 KVLPDYLLQTTTLQELTIHRCP   89 (133)
Q Consensus        68 ~~lp~~~~~l~~L~~L~i~~c~   89 (133)
                      ..+|..+..+++|++|++++|.
T Consensus       234 ~~l~~~l~~~~~L~~L~L~~n~  255 (386)
T 2ca6_A          234 SALAIALKSWPNLRELGLNDCL  255 (386)
T ss_dssp             HHHHHHGGGCTTCCEEECTTCC
T ss_pred             HHHHHHHccCCCcCEEECCCCC
Confidence            5677777788899999999886

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=97.84  E-value=1.1e-06  Score=66.99  Aligned_cols=85  Identities=15%  Similarity=0.223  Sum_probs=41.0

Q ss_pred             CCCccEEeecCCCCCccCC---cc------------CCCCCCccEEEeccCCCCccccccccccCC-CCCCccEEeecCC
Q 048450            1 MPRLSSLTVGSCNKLKALP---DY------------LLQTTALQELSICSCDLLEELPILEDRRTT-DIPRLTSLWISDC   64 (133)
Q Consensus         1 l~~L~~L~l~~~~~l~~lp---~~------------~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~-~l~~L~~L~l~~c   64 (133)
                      +++|++|++++|..+..+.   ..            ...+++|+.|++++|.-....+.    .+. .+++|++|++.+|
T Consensus        65 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~----~l~~~~~~L~~L~L~~~  140 (594)
T 2p1m_B           65 FPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLE----LIAKSFKNFKVLVLSSC  140 (594)
T ss_dssp             CTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHH----HHHHHCTTCCEEEEESC
T ss_pred             CCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHH----HHHHhCCCCcEEeCCCc
Confidence            3567777777765443221   00            12355666777666541111111    221 3556666666665


Q ss_pred             CCCCc--cCcCCCCCCCccEEEEecCc
Q 048450           65 PNLKV--LPDYLLQTTTLQELTIHRCP   89 (133)
Q Consensus        65 ~~l~~--lp~~~~~l~~L~~L~i~~c~   89 (133)
                      ..++.  ++....++++|++|++++|.
T Consensus       141 ~~~~~~~l~~~~~~~~~L~~L~L~~~~  167 (594)
T 2p1m_B          141 EGFSTDGLAAIAATCRNLKELDLRESD  167 (594)
T ss_dssp             EEEEHHHHHHHHHHCTTCCEEECTTCE
T ss_pred             CCCCHHHHHHHHHhCCCCCEEeCcCCc
Confidence            44333  33222344555666655554

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=97.83  E-value=0.00012  Score=52.09  Aligned_cols=78  Identities=17%  Similarity=0.238  Sum_probs=56.0

Q ss_pred             CCccEEeecCCCCCccCCc-cCCCCCCccEEEeccCCCCccccccccccCCCCCCcc-EEeecCCCCCCccCc-CCCCCC
Q 048450            2 PRLSSLTVGSCNKLKALPD-YLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLT-SLWISDCPNLKVLPD-YLLQTT   78 (133)
Q Consensus         2 ~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~-~L~l~~c~~l~~lp~-~~~~l~   78 (133)
                      ++|++++++++ .+..+|. .+.++++|+.+++.+.  ++.++..   .+..+++|+ .+.+.+  .++.++. .+.+++
T Consensus       226 ~~L~~l~L~~n-~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~---aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~  297 (329)
T 3sb4_A          226 PNLVSLDISKT-NATTIPDFTFAQKKYLLKIKLPHN--LKTIGQR---VFSNCGRLAGTLELPA--SVTAIEFGAFMGCD  297 (329)
T ss_dssp             TTCCEEECTTB-CCCEECTTTTTTCTTCCEEECCTT--CCEECTT---TTTTCTTCCEEEEECT--TCCEECTTTTTTCT
T ss_pred             CCCeEEECCCC-CcceecHhhhhCCCCCCEEECCcc--cceehHH---HhhCChhccEEEEEcc--cceEEchhhhhCCc
Confidence            56788888764 5777774 3567788888888763  7777764   677788888 888865  5777763 466777


Q ss_pred             CccEEEEec
Q 048450           79 TLQELTIHR   87 (133)
Q Consensus        79 ~L~~L~i~~   87 (133)
                      +|+.+++.+
T Consensus       298 ~L~~l~l~~  306 (329)
T 3sb4_A          298 NLRYVLATG  306 (329)
T ss_dssp             TEEEEEECS
T ss_pred             cCCEEEeCC
Confidence            888888754

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.68  E-value=1.5e-05  Score=55.94  Aligned_cols=59  Identities=24%  Similarity=0.211  Sum_probs=31.6

Q ss_pred             CCCCccEEEeccCCCCcccc---ccccccCCCCCCccEEeecCCCCCCccCcCCCCCC--CccEEEEecCc
Q 048450           24 QTTALQELSICSCDLLEELP---ILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTT--TLQELTIHRCP   89 (133)
Q Consensus        24 ~l~~L~~L~l~~c~~l~~lp---~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~--~L~~L~i~~c~   89 (133)
                      ++++|+.|+++++. +..++   .    .++.+++|+.|++++ +.++.+. .+..+.  +|++|++.+++
T Consensus       168 ~l~~L~~L~Ls~N~-l~~l~~l~~----~~~~l~~L~~L~Ls~-N~i~~~~-~l~~l~~l~L~~L~L~~Np  231 (267)
T 3rw6_A          168 NIPELLSLNLSNNR-LYRLDDMSS----IVQKAPNLKILNLSG-NELKSER-ELDKIKGLKLEELWLDGNS  231 (267)
T ss_dssp             HCTTCCEEECTTSC-CCCCGGGTT----HHHHSTTCCEEECTT-SCCCSGG-GGGGGTTSCCSEEECTTST
T ss_pred             hCCCCCEEECCCCC-CCCCccchh----HHhhCCCCCEEECCC-CccCCch-hhhhcccCCcceEEccCCc
Confidence            45666677776643 44332   2    333566677777765 3344442 122222  66677776665

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=97.60  E-value=3.5e-05  Score=58.67  Aligned_cols=20  Identities=10%  Similarity=0.197  Sum_probs=10.4

Q ss_pred             cCcCCCCCCCccEEEEecCc
Q 048450           70 LPDYLLQTTTLQELTIHRCP   89 (133)
Q Consensus        70 lp~~~~~l~~L~~L~i~~c~   89 (133)
                      +|..+..+++|++|++++|.
T Consensus       285 l~~~~~~~~~L~~L~Ls~~~  304 (592)
T 3ogk_B          285 MPILFPFAAQIRKLDLLYAL  304 (592)
T ss_dssp             GGGGGGGGGGCCEEEETTCC
T ss_pred             HHHHHhhcCCCcEEecCCCc
Confidence            34434444556666666554

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=97.60  E-value=9e-06  Score=61.93  Aligned_cols=38  Identities=24%  Similarity=0.291  Sum_probs=18.1

Q ss_pred             CCCCccEEeecCCC-CC--CccCcCCCCCCCccEEEEecCc
Q 048450           52 DIPRLTSLWISDCP-NL--KVLPDYLLQTTTLQELTIHRCP   89 (133)
Q Consensus        52 ~l~~L~~L~l~~c~-~l--~~lp~~~~~l~~L~~L~i~~c~   89 (133)
                      .+++|++|++++|. .+  ..++..+..+++|++|++++|.
T Consensus       182 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~  222 (594)
T 2p1m_B          182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAV  222 (594)
T ss_dssp             TCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTS
T ss_pred             cCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCC
Confidence            45566666665543 11  1111111234566777776663

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=97.50  E-value=0.00011  Score=56.04  Aligned_cols=39  Identities=10%  Similarity=0.009  Sum_probs=25.4

Q ss_pred             cCCCCCCccEEeecCCCCCCc--cCcCCCCCCCccEEEEecC
Q 048450           49 RTTDIPRLTSLWISDCPNLKV--LPDYLLQTTTLQELTIHRC   88 (133)
Q Consensus        49 ~~~~l~~L~~L~l~~c~~l~~--lp~~~~~l~~L~~L~i~~c   88 (133)
                      .+..+++|++|++++|. +..  ++..+..+++|+.|++.++
T Consensus       288 ~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~~  328 (592)
T 3ogk_B          288 LFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRNV  328 (592)
T ss_dssp             GGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred             HHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEeccCc
Confidence            34456778888888876 432  2223466788888888743

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=97.48  E-value=1.5e-05  Score=58.87  Aligned_cols=82  Identities=24%  Similarity=0.354  Sum_probs=47.6

Q ss_pred             CCccEEeecCCCCCc-----cCCccCCCCCCccEEEeccCCCCccc-cccccccCCCCC----CccEEeecCCCCCC---
Q 048450            2 PRLSSLTVGSCNKLK-----ALPDYLLQTTALQELSICSCDLLEEL-PILEDRRTTDIP----RLTSLWISDCPNLK---   68 (133)
Q Consensus         2 ~~L~~L~l~~~~~l~-----~lp~~~~~l~~L~~L~l~~c~~l~~l-p~~~~~~~~~l~----~L~~L~l~~c~~l~---   68 (133)
                      ++|++|++++|. +.     .++..+..+++|++|+++++. +... +..   ....++    +|++|++++|. ++   
T Consensus        28 ~~L~~L~L~~~~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~---l~~~l~~~~~~L~~L~L~~n~-i~~~~  101 (461)
T 1z7x_W           28 QQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSNE-LGDVGVHC---VLQGLQTPSCKIQKLSLQNCC-LTGAG  101 (461)
T ss_dssp             TTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHH---HHHTTCSTTCCCCEEECTTSC-CBGGG
T ss_pred             CCccEEEccCCC-CCHHHHHHHHHHHHhCCCcCEEeCCCCc-CChHHHHH---HHHHHhhCCCceeEEEccCCC-CCHHH
Confidence            567777777764 33     344455666777777777754 3221 110   011122    57777777765 33   


Q ss_pred             --ccCcCCCCCCCccEEEEecCc
Q 048450           69 --VLPDYLLQTTTLQELTIHRCP   89 (133)
Q Consensus        69 --~lp~~~~~l~~L~~L~i~~c~   89 (133)
                        .+|..+..+++|++|+++++.
T Consensus       102 ~~~l~~~l~~~~~L~~L~Ls~n~  124 (461)
T 1z7x_W          102 CGVLSSTLRTLPTLQELHLSDNL  124 (461)
T ss_dssp             HHHHHHHTTSCTTCCEEECCSSB
T ss_pred             HHHHHHHHccCCceeEEECCCCc
Confidence              456666667777777777765

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=97.37  E-value=0.00098  Score=47.41  Aligned_cols=76  Identities=11%  Similarity=0.079  Sum_probs=60.7

Q ss_pred             CCCccEEeecCCCCCccCCc-cCCCCCCcc-EEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCc-CCCCC
Q 048450            1 MPRLSSLTVGSCNKLKALPD-YLLQTTALQ-ELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPD-YLLQT   77 (133)
Q Consensus         1 l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~-~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~l   77 (133)
                      +++|+.|++.+.  +..++. .+.++++|+ .+.+.+  .++.++..   .+..+++|+.+++.. +.++.++. .+.++
T Consensus       249 ~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~---aF~~c~~L~~l~l~~-n~i~~I~~~aF~~~  320 (329)
T 3sb4_A          249 KKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFG---AFMGCDNLRYVLATG-DKITTLGDELFGNG  320 (329)
T ss_dssp             CTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECTT---TTTTCTTEEEEEECS-SCCCEECTTTTCTT
T ss_pred             CCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEchh---hhhCCccCCEEEeCC-CccCccchhhhcCC
Confidence            357889998873  777874 467899999 999987  68888764   788899999999976 56888876 46678


Q ss_pred             CCccEEE
Q 048450           78 TTLQELT   84 (133)
Q Consensus        78 ~~L~~L~   84 (133)
                      ++|+.++
T Consensus       321 ~~L~~ly  327 (329)
T 3sb4_A          321 VPSKLIY  327 (329)
T ss_dssp             CCCCEEE
T ss_pred             cchhhhc
Confidence            8888875

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=97.35  E-value=7.8e-06  Score=60.48  Aligned_cols=84  Identities=32%  Similarity=0.447  Sum_probs=44.0

Q ss_pred             CccEEeecCCCCCcc-----CCccCCCCCCccEEEeccCCCCccccccc-cccCC-CCCCccEEeecCCCCCC-----cc
Q 048450            3 RLSSLTVGSCNKLKA-----LPDYLLQTTALQELSICSCDLLEELPILE-DRRTT-DIPRLTSLWISDCPNLK-----VL   70 (133)
Q Consensus         3 ~L~~L~l~~~~~l~~-----lp~~~~~l~~L~~L~l~~c~~l~~lp~~~-~~~~~-~l~~L~~L~l~~c~~l~-----~l   70 (133)
                      +|++|++++|. +..     ++..+..+++|+.|+++++. +....... ...+. ..++|++|++++|. ++     .+
T Consensus       314 ~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l  390 (461)
T 1z7x_W          314 QLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNNR-LEDAGVRELCQGLGQPGSVLRVLWLADCD-VSDSSCSSL  390 (461)
T ss_dssp             CCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHH
T ss_pred             cceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCCc-cccccHHHHHHHHcCCCCceEEEECCCCC-CChhhHHHH
Confidence            45555555543 221     23334455666666666653 33221100 00111 15577777777764 44     56


Q ss_pred             CcCCCCCCCccEEEEecCc
Q 048450           71 PDYLLQTTTLQELTIHRCP   89 (133)
Q Consensus        71 p~~~~~l~~L~~L~i~~c~   89 (133)
                      |..+..+++|++|++++|+
T Consensus       391 ~~~l~~~~~L~~L~l~~N~  409 (461)
T 1z7x_W          391 AATLLANHSLRELDLSNNC  409 (461)
T ss_dssp             HHHHHHCCCCCEEECCSSS
T ss_pred             HHHHHhCCCccEEECCCCC
Confidence            6666666777777777764

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=97.19  E-value=1.7e-05  Score=57.41  Aligned_cols=34  Identities=15%  Similarity=-0.104  Sum_probs=16.8

Q ss_pred             CccEEeecCCCCCCccC-----cCCCCCCCccEEEEecCc
Q 048450           55 RLTSLWISDCPNLKVLP-----DYLLQTTTLQELTIHRCP   89 (133)
Q Consensus        55 ~L~~L~l~~c~~l~~lp-----~~~~~l~~L~~L~i~~c~   89 (133)
                      +|++|+++++. ++..+     ..+..+++|+.|++++|.
T Consensus       226 ~L~~L~Ls~N~-l~~~~~~~l~~~~~~l~~L~~L~L~~n~  264 (362)
T 3goz_A          226 HVVSLNLCLNC-LHGPSLENLKLLKDSLKHLQTVYLDYDI  264 (362)
T ss_dssp             TCCEEECCSSC-CCCCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred             CceEEECcCCC-CCcHHHHHHHHHHhcCCCccEEEeccCC
Confidence            56666665533 33221     223445566666666554

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=97.18  E-value=3e-05  Score=56.06  Aligned_cols=33  Identities=15%  Similarity=0.265  Sum_probs=18.5

Q ss_pred             CccEEeecCCCCCccCC-----ccCCCCC-CccEEEeccC
Q 048450            3 RLSSLTVGSCNKLKALP-----DYLLQTT-ALQELSICSC   36 (133)
Q Consensus         3 ~L~~L~l~~~~~l~~lp-----~~~~~l~-~L~~L~l~~c   36 (133)
                      +|++|++++| .+...+     ..+..++ +|+.|++++|
T Consensus        23 ~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N   61 (362)
T 3goz_A           23 GVTSLDLSLN-NLYSISTVELIQAFANTPASVTSLNLSGN   61 (362)
T ss_dssp             TCCEEECTTS-CGGGSCHHHHHHHHHTCCTTCCEEECCSS
T ss_pred             CceEEEccCC-CCChHHHHHHHHHHHhCCCceeEEECcCC
Confidence            3666666665 344444     2344555 6666666665

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=96.90  E-value=0.0017  Score=47.26  Aligned_cols=14  Identities=21%  Similarity=0.138  Sum_probs=10.1

Q ss_pred             CCCCccEEEEecCc
Q 048450           76 QTTTLQELTIHRCP   89 (133)
Q Consensus        76 ~l~~L~~L~i~~c~   89 (133)
                      .+++|+.|++.+|.
T Consensus       250 ~~p~Lr~L~L~~~~  263 (362)
T 2ra8_A          250 RFPNLKWLGIVDAE  263 (362)
T ss_dssp             TCTTCCEEEEESCT
T ss_pred             CCCCcCEEeCCCCC
Confidence            45778888887765

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=96.89  E-value=0.00024  Score=51.84  Aligned_cols=32  Identities=25%  Similarity=0.341  Sum_probs=15.7

Q ss_pred             CCccEEeecCCCCCcc-CCccC--CCCCCccEEEec
Q 048450            2 PRLSSLTVGSCNKLKA-LPDYL--LQTTALQELSIC   34 (133)
Q Consensus         2 ~~L~~L~l~~~~~l~~-lp~~~--~~l~~L~~L~l~   34 (133)
                      ++|++|+|..|. +.. -...+  ..+|+|+.|+++
T Consensus       193 ~~L~~L~L~~~~-l~~~~l~~l~~~~lp~L~~L~L~  227 (362)
T 2ra8_A          193 PNLKSLEIISGG-LPDSVVEDILGSDLPNLEKLVLY  227 (362)
T ss_dssp             TTCSEEEEECSB-CCHHHHHHHHHSBCTTCCEEEEE
T ss_pred             CCCcEEEEecCC-CChHHHHHHHHccCCCCcEEEEe
Confidence            567777776543 211 00111  246666666664

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=96.75  E-value=0.00014  Score=53.10  Aligned_cols=59  Identities=20%  Similarity=0.144  Sum_probs=28.0

Q ss_pred             CCCccEEEeccCCCCcc-----ccccccccCCCCCCccEEeecCCCCCCc-----cCcCCCCCCCccEEEEecCc
Q 048450           25 TTALQELSICSCDLLEE-----LPILEDRRTTDIPRLTSLWISDCPNLKV-----LPDYLLQTTTLQELTIHRCP   89 (133)
Q Consensus        25 l~~L~~L~l~~c~~l~~-----lp~~~~~~~~~l~~L~~L~l~~c~~l~~-----lp~~~~~l~~L~~L~i~~c~   89 (133)
                      .++|+.|++++|. ++.     ++.    .+...++|++|++++|. ++.     ++..+...++|+.|++++|.
T Consensus       154 ~~~L~~L~Ls~n~-l~~~~~~~l~~----~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~  222 (372)
T 3un9_A          154 QCQITTLRLSNNP-LTAAGVAVLME----GLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNG  222 (372)
T ss_dssp             TCCCCEEECCSSC-CHHHHHHHHHH----HHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSC
T ss_pred             CCccceeeCCCCC-CChHHHHHHHH----HHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCC
Confidence            4556666666653 322     222    23345556666665543 322     22333334455666665553

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=96.47  E-value=0.0015  Score=45.76  Aligned_cols=78  Identities=21%  Similarity=0.310  Sum_probs=50.4

Q ss_pred             CCCccEEeecCCCCCccC---CccCCCCCCccEEEeccCCCCccccccccccCCCCC--CccEEeecCCCCCCccCc---
Q 048450            1 MPRLSSLTVGSCNKLKAL---PDYLLQTTALQELSICSCDLLEELPILEDRRTTDIP--RLTSLWISDCPNLKVLPD---   72 (133)
Q Consensus         1 l~~L~~L~l~~~~~l~~l---p~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~--~L~~L~l~~c~~l~~lp~---   72 (133)
                      +++|++|+++++ .+..+   |..+..+++|+.|+++++. +..+.     .+..+.  +|++|++.+++.-..+|.   
T Consensus       169 l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~~-----~l~~l~~l~L~~L~L~~Npl~~~~~~~~~  241 (267)
T 3rw6_A          169 IPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNE-LKSER-----ELDKIKGLKLEELWLDGNSLCDTFRDQST  241 (267)
T ss_dssp             CTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTSC-CCSGG-----GGGGGTTSCCSEEECTTSTTGGGCSSHHH
T ss_pred             CCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCCc-cCCch-----hhhhcccCCcceEEccCCcCccccCcchh
Confidence            578899999885 55544   3445678899999998854 66552     233333  889999988775444542   


Q ss_pred             ----CCCCCCCccEEEE
Q 048450           73 ----YLLQTTTLQELTI   85 (133)
Q Consensus        73 ----~~~~l~~L~~L~i   85 (133)
                          .+..+++|+.|+-
T Consensus       242 y~~~il~~~P~L~~LDg  258 (267)
T 3rw6_A          242 YISAIRERFPKLLRLDG  258 (267)
T ss_dssp             HHHHHHHHCTTCCEESS
T ss_pred             HHHHHHHHCcccCeECC
Confidence                1345566666653

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=96.35  E-value=0.0011  Score=43.62  Aligned_cols=82  Identities=22%  Similarity=0.240  Sum_probs=53.0

Q ss_pred             CCccEEeecCCCCCcc-----CCccCCCCCCccEEEeccCCCCcc-----ccccccccCCCCCCccEEeecCCCCCCc--
Q 048450            2 PRLSSLTVGSCNKLKA-----LPDYLLQTTALQELSICSCDLLEE-----LPILEDRRTTDIPRLTSLWISDCPNLKV--   69 (133)
Q Consensus         2 ~~L~~L~l~~~~~l~~-----lp~~~~~l~~L~~L~l~~c~~l~~-----lp~~~~~~~~~l~~L~~L~l~~c~~l~~--   69 (133)
                      ++|++|++++|..+..     +...+...++|+.|++++|. +..     +..    .+...++|++|+++++. ++.  
T Consensus        36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~----~L~~n~~L~~L~L~~N~-i~~~g  109 (185)
T 1io0_A           36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAE----MLKVNNTLKSLNVESNF-ISGSG  109 (185)
T ss_dssp             TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHH----HHHHCSSCCEEECCSSC-CCHHH
T ss_pred             CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHH----HHHhCCCcCEEECcCCc-CCHHH
Confidence            5688888888634432     33445566888899998865 432     222    33445778889888754 443  


Q ss_pred             ---cCcCCCCCCCccEEEE--ecCc
Q 048450           70 ---LPDYLLQTTTLQELTI--HRCP   89 (133)
Q Consensus        70 ---lp~~~~~l~~L~~L~i--~~c~   89 (133)
                         +...+...++|++|++  +++.
T Consensus       110 ~~~l~~~L~~n~~L~~L~L~~~~N~  134 (185)
T 1io0_A          110 ILALVEALQSNTSLIELRIDNQSQP  134 (185)
T ss_dssp             HHHHHHGGGGCSSCCEEECCCCSSC
T ss_pred             HHHHHHHHHhCCCceEEEecCCCCC
Confidence               4455556678889988  5554

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=96.17  E-value=0.00046  Score=50.36  Aligned_cols=84  Identities=20%  Similarity=0.231  Sum_probs=36.6

Q ss_pred             CccEEeecCCCCCccC--CccCCCCCCccEEEeccCCCCcccccccc-ccC-CCCCCccEEeecCCCCCCc-----cCcC
Q 048450            3 RLSSLTVGSCNKLKAL--PDYLLQTTALQELSICSCDLLEELPILED-RRT-TDIPRLTSLWISDCPNLKV-----LPDY   73 (133)
Q Consensus         3 ~L~~L~l~~~~~l~~l--p~~~~~l~~L~~L~l~~c~~l~~lp~~~~-~~~-~~l~~L~~L~l~~c~~l~~-----lp~~   73 (133)
                      +|++|++++|. +..-  ..-...+++|+.|++++|. ++....... ..+ ...++|++|++++|. ++.     ++..
T Consensus       102 ~L~~L~Ls~n~-l~~~~~~~l~~~L~~L~~L~Ls~n~-l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~  178 (372)
T 3un9_A          102 ALDEVNLASCQ-LDPAGLRTLLPVFLRARKLGLQLNS-LGPEACKDLRDLLLHDQCQITTLRLSNNP-LTAAGVAVLMEG  178 (372)
T ss_dssp             CEEEEECTTCC-CCHHHHHHTHHHHHTEEEEECCSSC-CCHHHHHHHHHHHHSTTCCCCEEECCSSC-CHHHHHHHHHHH
T ss_pred             CceEEEecCCC-CCHHHHHHHHHHHHhccHhhcCCCC-CCHHHHHHHHHHHHhcCCccceeeCCCCC-CChHHHHHHHHH
Confidence            56666666652 2211  1111233456666666653 322111000 011 124556666666653 322     3333


Q ss_pred             CCCCCCccEEEEecCc
Q 048450           74 LLQTTTLQELTIHRCP   89 (133)
Q Consensus        74 ~~~l~~L~~L~i~~c~   89 (133)
                      +...++|++|++++|.
T Consensus       179 L~~~~~L~~L~Ls~N~  194 (372)
T 3un9_A          179 LAGNTSVTHLSLLHTG  194 (372)
T ss_dssp             HHTCSSCCEEECTTSS
T ss_pred             HhcCCCcCEEeCCCCC
Confidence            3445566666666654

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=95.98  E-value=0.0011  Score=43.54  Aligned_cols=81  Identities=19%  Similarity=0.176  Sum_probs=56.3

Q ss_pred             CCccEEeecCCCCCcc-----CCccCCCCCCccEEEeccCCCCcc-----ccccccccCCCCCCccEEee--cCCCCCCc
Q 048450            2 PRLSSLTVGSCNKLKA-----LPDYLLQTTALQELSICSCDLLEE-----LPILEDRRTTDIPRLTSLWI--SDCPNLKV   69 (133)
Q Consensus         2 ~~L~~L~l~~~~~l~~-----lp~~~~~l~~L~~L~l~~c~~l~~-----lp~~~~~~~~~l~~L~~L~l--~~c~~l~~   69 (133)
                      ++|++|++++|. +..     +...+...++|+.|++++|. ++.     +..    .+...++|++|++  +++ .++.
T Consensus        65 ~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~N~-i~~~g~~~l~~----~L~~n~~L~~L~L~~~~N-~i~~  137 (185)
T 1io0_A           65 TYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESNF-ISGSGILALVE----ALQSNTSLIELRIDNQSQ-PLGN  137 (185)
T ss_dssp             CSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSSC-CCHHHHHHHHH----GGGGCSSCCEEECCCCSS-CCCH
T ss_pred             CCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECcCCc-CCHHHHHHHHH----HHHhCCCceEEEecCCCC-CCCH
Confidence            579999999974 432     33344556889999999975 543     334    5666789999999  554 3543


Q ss_pred             -----cCcCCCCCCCccEEEEecCc
Q 048450           70 -----LPDYLLQTTTLQELTIHRCP   89 (133)
Q Consensus        70 -----lp~~~~~l~~L~~L~i~~c~   89 (133)
                           +...+...++|++|+++++.
T Consensus       138 ~g~~~l~~~L~~n~~L~~L~L~~n~  162 (185)
T 1io0_A          138 NVEMEIANMLEKNTTLLKFGYHFTQ  162 (185)
T ss_dssp             HHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHHHHHHHHhCCCcCEEeccCCC
Confidence                 33344455789999999875

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=95.97  E-value=0.081  Score=38.84  Aligned_cols=12  Identities=17%  Similarity=0.180  Sum_probs=5.3

Q ss_pred             CCCCCCccEEee
Q 048450           50 TTDIPRLTSLWI   61 (133)
Q Consensus        50 ~~~l~~L~~L~l   61 (133)
                      +..+++|+.+.+
T Consensus       222 F~~~~~L~~l~l  233 (401)
T 4fdw_A          222 FLKTSQLKTIEI  233 (401)
T ss_dssp             TTTCTTCCCEEC
T ss_pred             hhCCCCCCEEec
Confidence            333444444444

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=95.11  E-value=0.046  Score=33.78  Aligned_cols=34  Identities=21%  Similarity=0.216  Sum_probs=16.6

Q ss_pred             CccEEEeccCCCCccccccccccCCCCCCccEEeecCC
Q 048450           27 ALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDC   64 (133)
Q Consensus        27 ~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c   64 (133)
                      +|+.|+++++ ++..+|.+   .+..+++|+.|++.++
T Consensus        32 ~l~~L~Ls~N-~l~~l~~~---~f~~l~~L~~L~L~~N   65 (130)
T 3rfe_A           32 DTTELVLTGN-NLTALPPG---LLDALPALRTAHLGAN   65 (130)
T ss_dssp             TCSEEECTTS-CCSSCCTT---TGGGCTTCCEEECCSS
T ss_pred             CCCEEECCCC-cCCccChh---hhhhccccCEEEecCC
Confidence            4555555553 35555442   3344555555555543

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=94.65  E-value=0.28  Score=35.98  Aligned_cols=14  Identities=14%  Similarity=-0.244  Sum_probs=6.7

Q ss_pred             cCCCCCCccEEeec
Q 048450           49 RTTDIPRLTSLWIS   62 (133)
Q Consensus        49 ~~~~l~~L~~L~l~   62 (133)
                      .+..+++|+.+++.
T Consensus       175 aF~~c~~L~~l~l~  188 (401)
T 4fdw_A          175 IFYYCYNLKKADLS  188 (401)
T ss_dssp             TTTTCTTCCEEECT
T ss_pred             HhhCcccCCeeecC
Confidence            34444555555554

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=94.11  E-value=0.34  Score=35.07  Aligned_cols=56  Identities=23%  Similarity=0.315  Sum_probs=24.8

Q ss_pred             CCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcC-CCCCCCccEEEE
Q 048450           23 LQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDY-LLQTTTLQELTI   85 (133)
Q Consensus        23 ~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~l~~L~~L~i   85 (133)
                      .+.++|+.+.+..  .+..++..   .+...++|+.+.+..  .++.+... +.++++|+.+.+
T Consensus       285 ~~c~~L~~i~l~~--~i~~I~~~---aF~~c~~L~~i~lp~--~v~~I~~~aF~~C~~L~~i~i  341 (394)
T 4gt6_A          285 MNCPALQDIEFSS--RITELPES---VFAGCISLKSIDIPE--GITQILDDAFAGCEQLERIAI  341 (394)
T ss_dssp             TTCTTCCEEECCT--TCCEECTT---TTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEEE
T ss_pred             ccccccccccCCC--cccccCce---eecCCCCcCEEEeCC--cccEehHhHhhCCCCCCEEEE
Confidence            3445555555532  34444442   344445555555532  23444322 334445555554

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=94.04  E-value=0.13  Score=31.77  Aligned_cols=52  Identities=23%  Similarity=0.194  Sum_probs=37.8

Q ss_pred             EEEeccCCCCc--cccccccccCCCCCCccEEeecCCCCCCccCcC-CCCCCCccEEEEecCc
Q 048450           30 ELSICSCDLLE--ELPILEDRRTTDIPRLTSLWISDCPNLKVLPDY-LLQTTTLQELTIHRCP   89 (133)
Q Consensus        30 ~L~l~~c~~l~--~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~l~~L~~L~i~~c~   89 (133)
                      .++-++ ..++  .+|.    .+  -++|++|++++ +.++.+|.+ +..+++|+.|++.+++
T Consensus        12 ~v~Cs~-~~L~~~~vP~----~l--p~~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~NP   66 (130)
T 3rfe_A           12 LVDCGR-RGLTWASLPT----AF--PVDTTELVLTG-NNLTALPPGLLDALPALRTAHLGANP   66 (130)
T ss_dssp             EEECCS-SCCCTTTSCS----CC--CTTCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred             EEEeCC-CCCccccCCC----CC--CcCCCEEECCC-CcCCccChhhhhhccccCEEEecCCC
Confidence            344444 3466  7776    43  34799999988 668999876 4678899999999765

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=93.77  E-value=0.36  Score=34.94  Aligned_cols=55  Identities=11%  Similarity=0.095  Sum_probs=24.3

Q ss_pred             CCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCc-CCCCCCCccEEEE
Q 048450           24 QTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPD-YLLQTTTLQELTI   85 (133)
Q Consensus        24 ~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~i   85 (133)
                      ...+|+.+.+.+  .++.++..   .+...++|+.+.+..  .++.++. .+.++++|+.+.+
T Consensus       295 ~~~~L~~i~l~~--~i~~I~~~---aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~l  350 (394)
T 4fs7_A          295 GCSSLTEVKLLD--SVKFIGEE---AFESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINF  350 (394)
T ss_dssp             TCTTCCEEEECT--TCCEECTT---TTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECC
T ss_pred             cccccccccccc--ccceechh---hhcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEE
Confidence            444555555532  24444432   344445555555532  2444432 2334445555544

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=92.86  E-value=1.2  Score=32.18  Aligned_cols=61  Identities=11%  Similarity=0.162  Sum_probs=37.6

Q ss_pred             CCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcC-CCCCCCccEEEEecCc
Q 048450           22 LLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDY-LLQTTTLQELTIHRCP   89 (133)
Q Consensus        22 ~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~l~~L~~L~i~~c~   89 (133)
                      +.+.++|+.+.|..  .++.++..   .+..+++|+.+.|..  .++.+... +.++++|+.+++.+..
T Consensus       307 F~~c~~L~~i~lp~--~v~~I~~~---aF~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~~~  368 (394)
T 4gt6_A          307 FAGCISLKSIDIPE--GITQILDD---AFAGCEQLERIAIPS--SVTKIPESAFSNCTALNNIEYSGSR  368 (394)
T ss_dssp             TTTCTTCCEEECCT--TCCEECTT---TTTTCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEESSCH
T ss_pred             ecCCCCcCEEEeCC--cccEehHh---HhhCCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEECCce
Confidence            34566777777753  35666553   566677777777742  35566533 4566777777776643

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=92.24  E-value=0.6  Score=33.38  Aligned_cols=76  Identities=17%  Similarity=0.343  Sum_probs=40.3

Q ss_pred             CccEEeecCCCCCccCCc-cCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcC-CCCCCCc
Q 048450            3 RLSSLTVGSCNKLKALPD-YLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDY-LLQTTTL   80 (133)
Q Consensus         3 ~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~l~~L   80 (133)
                      +|+.+.+..  .+..+.. .+.+..+|+.+.+..  .+..++..   .+..+++|+.+.+.+ ..++.++.. +.++.+|
T Consensus       241 ~L~~i~lp~--~v~~I~~~aF~~~~~l~~i~l~~--~i~~i~~~---aF~~c~~L~~i~l~~-~~i~~I~~~aF~~c~~L  312 (379)
T 4h09_A          241 ALDEIAIPK--NVTSIGSFLLQNCTALKTLNFYA--KVKTVPYL---LCSGCSNLTKVVMDN-SAIETLEPRVFMDCVKL  312 (379)
T ss_dssp             SCCEEEECT--TCCEECTTTTTTCTTCCEEEECC--CCSEECTT---TTTTCTTCCEEEECC-TTCCEECTTTTTTCTTC
T ss_pred             cceEEEcCC--CccEeCccccceeehhccccccc--cceecccc---ccccccccccccccc-cccceehhhhhcCCCCC
Confidence            455555543  2344432 234556677776643  35555543   455566777776654 235555533 4455666


Q ss_pred             cEEEEe
Q 048450           81 QELTIH   86 (133)
Q Consensus        81 ~~L~i~   86 (133)
                      +.+.+.
T Consensus       313 ~~i~lp  318 (379)
T 4h09_A          313 SSVTLP  318 (379)
T ss_dssp             CEEECC
T ss_pred             CEEEcC
Confidence            666664

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=91.09  E-value=0.41  Score=34.60  Aligned_cols=78  Identities=13%  Similarity=0.172  Sum_probs=57.4

Q ss_pred             CCccEEeecCCCCCccCCc-cCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCc-CCCCCCC
Q 048450            2 PRLSSLTVGSCNKLKALPD-YLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPD-YLLQTTT   79 (133)
Q Consensus         2 ~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~l~~   79 (133)
                      ++|+.+.+.+  .+..++. .+.+.++|+.+++.+  .++.++..   .+..+++|+.+.+..  .++.++. .+.++++
T Consensus       297 ~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~---aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~  367 (394)
T 4fs7_A          297 SSLTEVKLLD--SVKFIGEEAFESCTSLVSIDLPY--LVEEIGKR---SFRGCTSLSNINFPL--SLRKIGANAFQGCIN  367 (394)
T ss_dssp             TTCCEEEECT--TCCEECTTTTTTCTTCCEECCCT--TCCEECTT---TTTTCTTCCEECCCT--TCCEECTTTBTTCTT
T ss_pred             cccccccccc--ccceechhhhcCCCCCCEEEeCC--cccEEhHH---hccCCCCCCEEEECc--cccEehHHHhhCCCC
Confidence            4677777754  4666663 356788999999864  47788764   677889999999864  3777765 4667889


Q ss_pred             ccEEEEecC
Q 048450           80 LQELTIHRC   88 (133)
Q Consensus        80 L~~L~i~~c   88 (133)
                      |+.+++...
T Consensus       368 L~~i~lp~~  376 (394)
T 4fs7_A          368 LKKVELPKR  376 (394)
T ss_dssp             CCEEEEEGG
T ss_pred             CCEEEECCC
Confidence            999999753

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=89.63  E-value=3  Score=29.67  Aligned_cols=56  Identities=16%  Similarity=0.214  Sum_probs=24.0

Q ss_pred             CCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcC-CCCCCCccEEEEe
Q 048450           24 QTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDY-LLQTTTLQELTIH   86 (133)
Q Consensus        24 ~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~l~~L~~L~i~   86 (133)
                      ....|+.+.+..  .++.++..   .+....+|+.+.+..  .++.++.. +..+++|+.+.+.
T Consensus       238 ~~~~L~~i~lp~--~v~~I~~~---aF~~~~~l~~i~l~~--~i~~i~~~aF~~c~~L~~i~l~  294 (379)
T 4h09_A          238 GMKALDEIAIPK--NVTSIGSF---LLQNCTALKTLNFYA--KVKTVPYLLCSGCSNLTKVVMD  294 (379)
T ss_dssp             TCSSCCEEEECT--TCCEECTT---TTTTCTTCCEEEECC--CCSEECTTTTTTCTTCCEEEEC
T ss_pred             CCccceEEEcCC--CccEeCcc---ccceeehhccccccc--cceecccccccccccccccccc
Confidence            344455555532  24444332   334444555555532  24444332 2344455555543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=85.79  E-value=0.29  Score=32.54  Aligned_cols=85  Identities=13%  Similarity=0.160  Sum_probs=48.0

Q ss_pred             CCccEEeecCCCCCcc-----CCccCCCCCCccEEEeccCCCCccccccc-cccCCCCCCccEEeecCCCCCCc-----c
Q 048450            2 PRLSSLTVGSCNKLKA-----LPDYLLQTTALQELSICSCDLLEELPILE-DRRTTDIPRLTSLWISDCPNLKV-----L   70 (133)
Q Consensus         2 ~~L~~L~l~~~~~l~~-----lp~~~~~l~~L~~L~l~~c~~l~~lp~~~-~~~~~~l~~L~~L~l~~c~~l~~-----l   70 (133)
                      +.|++|+++++..+..     +-+.+..-++|+.|++++|. ++.-.... -+.+..-++|+.|+++++. ++.     +
T Consensus        41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~-igd~ga~alA~aL~~N~tL~~L~L~~N~-Ig~~Ga~al  118 (197)
T 1pgv_A           41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTA-ISDSEARGLIELIETSPSLRVLNVESNF-LTPELLARL  118 (197)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSC-CBHHHHTTHHHHHHHCSSCCEEECCSSB-CCHHHHHHH
T ss_pred             CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCC-CChHHHHHHHHHHhcCCccCeEecCCCc-CCHHHHHHH
Confidence            4678888876534432     23344556788888888864 43211100 0022234678888887743 432     3


Q ss_pred             CcCCCCCCCccEEEEecC
Q 048450           71 PDYLLQTTTLQELTIHRC   88 (133)
Q Consensus        71 p~~~~~l~~L~~L~i~~c   88 (133)
                      -+.+..-+.|++|+++++
T Consensus       119 a~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          119 LRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HHHTTTTCCCSEEECCCC
T ss_pred             HHHHhhCCceeEEECCCC
Confidence            334444457888888754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	133
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.03
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.99
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.97
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.9
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.87
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	98.82
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.81
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.8
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.79
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.78
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.77
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	98.75
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.72
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.66
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.64
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.64
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.57
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.52
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.51
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.51
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.46
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.46
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.42
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.42
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.35
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.23
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.19
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.04
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.03
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.0
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	97.98
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	97.91
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.11
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	96.62
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	96.06
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	95.36
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	94.24
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	92.68
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	92.03
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	92.03
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	85.89

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.03  E-value=3.4e-10  Score=69.36  Aligned_cols=76  Identities=24%  Similarity=0.192  Sum_probs=53.5

Q ss_pred             cEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCCccEEE
Q 048450            5 SSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTLQELT   84 (133)
Q Consensus         5 ~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~   84 (133)
                      |+|+++++ .+..++ .++.+++|++|+++++ .++.+|.    .++.+++|+.|++++ +.++.+| ++..+++|++++
T Consensus         1 R~L~Ls~n-~l~~l~-~l~~l~~L~~L~ls~N-~l~~lp~----~~~~l~~L~~L~l~~-N~i~~l~-~~~~l~~L~~L~   71 (124)
T d1dcea3           1 RVLHLAHK-DLTVLC-HLEQLLLVTHLDLSHN-RLRALPP----ALAALRCLEVLQASD-NALENVD-GVANLPRLQELL   71 (124)
T ss_dssp             SEEECTTS-CCSSCC-CGGGGTTCCEEECCSS-CCCCCCG----GGGGCTTCCEEECCS-SCCCCCG-GGTTCSSCCEEE
T ss_pred             CEEEcCCC-CCCCCc-ccccCCCCCEEECCCC-ccCcchh----hhhhhhccccccccc-ccccccC-ccccccccCeEE
Confidence            46777774 666666 4677777888888774 4777776    677777788888877 4566776 366777788888


Q ss_pred             EecCc
Q 048450           85 IHRCP   89 (133)
Q Consensus        85 i~~c~   89 (133)
                      ++++.
T Consensus        72 l~~N~   76 (124)
T d1dcea3          72 LCNNR   76 (124)
T ss_dssp             CCSSC
T ss_pred             CCCCc
Confidence            77654

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=1.1e-09  Score=69.61  Aligned_cols=83  Identities=27%  Similarity=0.224  Sum_probs=54.9

Q ss_pred             CCccEEeecCCCCCccCC-ccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCCc
Q 048450            2 PRLSSLTVGSCNKLKALP-DYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTL   80 (133)
Q Consensus         2 ~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L   80 (133)
                      ++|++|++.+.+.++.++ ..+.++++|+.|+++++ ++..++.+   .+..+++|++|++++ +.++.+|.......+|
T Consensus        31 ~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N-~l~~i~~~---~f~~l~~L~~L~Ls~-N~l~~l~~~~~~~~~l  105 (156)
T d2ifga3          31 ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPD---AFHFTPRLSRLNLSF-NALESLSWKTVQGLSL  105 (156)
T ss_dssp             SCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTT---GGGSCSCCCEEECCS-SCCSCCCSTTTCSCCC
T ss_pred             cccCeeecCCCccccccCchhhccccccCcceeecc-ccCCcccc---cccccccccceeccC-CCCcccChhhhccccc
Confidence            466777776655677776 34567777777777774 46777553   566677777777776 4466777655444467


Q ss_pred             cEEEEecCc
Q 048450           81 QELTIHRCP   89 (133)
Q Consensus        81 ~~L~i~~c~   89 (133)
                      ++|++++++
T Consensus       106 ~~L~L~~Np  114 (156)
T d2ifga3         106 QELVLSGNP  114 (156)
T ss_dssp             CEEECCSSC
T ss_pred             cccccCCCc
Confidence            777777554

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.97  E-value=7.9e-10  Score=67.67  Aligned_cols=81  Identities=22%  Similarity=0.335  Sum_probs=68.7

Q ss_pred             CCCccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCc--CCCCCC
Q 048450            1 MPRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPD--YLLQTT   78 (133)
Q Consensus         1 l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~--~~~~l~   78 (133)
                      +++|++|+++++ .+..+|+.++.+++|+.|+++++ .++.+|     .++.+++|++|++++ +.+..+|.  .+..++
T Consensus        19 l~~L~~L~ls~N-~l~~lp~~~~~l~~L~~L~l~~N-~i~~l~-----~~~~l~~L~~L~l~~-N~i~~~~~~~~l~~~~   90 (124)
T d1dcea3          19 LLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDN-ALENVD-----GVANLPRLQELLLCN-NRLQQSAAIQPLVSCP   90 (124)
T ss_dssp             GTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSS-CCCCCG-----GGTTCSSCCEEECCS-SCCCSSSTTGGGGGCT
T ss_pred             CCCCCEEECCCC-ccCcchhhhhhhhcccccccccc-cccccC-----ccccccccCeEECCC-CccCCCCCchhhcCCC
Confidence            468999999985 78899988899999999999995 588886     478899999999998 45777763  467789


Q ss_pred             CccEEEEecCc
Q 048450           79 TLQELTIHRCP   89 (133)
Q Consensus        79 ~L~~L~i~~c~   89 (133)
                      +|+.+++++++
T Consensus        91 ~L~~L~l~~N~  101 (124)
T d1dcea3          91 RLVLLNLQGNS  101 (124)
T ss_dssp             TCCEEECTTSG
T ss_pred             CCCEEECCCCc
Confidence            99999999876

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.90  E-value=6e-09  Score=67.88  Aligned_cols=108  Identities=9%  Similarity=0.139  Sum_probs=73.1

Q ss_pred             CCccEEeecCCCCCc-cCC-ccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcC-CCCCC
Q 048450            2 PRLSSLTVGSCNKLK-ALP-DYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDY-LLQTT   78 (133)
Q Consensus         2 ~~L~~L~l~~~~~l~-~lp-~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~l~   78 (133)
                      +++++|+|+++ .+. .++ ..++.+++|+.|+++++. +..++.+   .+..+++|++|++++ +.++.+|.. +.+++
T Consensus        29 ~~l~~L~Ls~N-~i~~~~~~~~f~~l~~L~~L~L~~N~-i~~~~~~---~~~~~~~L~~L~Ls~-N~l~~l~~~~F~~l~  102 (192)
T d1w8aa_          29 LHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQ-LTGIEPN---AFEGASHIQELQLGE-NKIKEISNKMFLGLH  102 (192)
T ss_dssp             TTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSC-CCCBCTT---TTTTCTTCCEEECCS-CCCCEECSSSSTTCT
T ss_pred             CCCCEEEeCCC-CCcccccccccCCCceEeeeeccccc-ccccccc---ccccccccceeeecc-ccccccCHHHHhCCC
Confidence            46788888885 443 343 445778889999988865 5455443   677788888888887 457777654 67788


Q ss_pred             CccEEEEecCchhHHhhcCCCCCCCcccCCCCceEEcCccce
Q 048450           79 TLQELTIHRCPLLENRYREGKGEDWHKISHIPHIKWSITRWC  120 (133)
Q Consensus        79 ~L~~L~i~~c~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~~  120 (133)
                      +|++|+++++. +...    ....+..+.++..+.+.++.+.
T Consensus       103 ~L~~L~L~~N~-l~~i----~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_         103 QLKTLNLYDNQ-ISCV----MPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             TCCEEECCSSC-CCEE----CTTSSTTCTTCCEEECTTCCBC
T ss_pred             cccccccCCcc-cccc----CHHHhcCCcccccccccccccc
Confidence            88888888865 2211    1223455667777777776553

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.87  E-value=7.5e-09  Score=67.38  Aligned_cols=84  Identities=17%  Similarity=0.229  Sum_probs=68.6

Q ss_pred             CCCccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcC-CCCCCC
Q 048450            1 MPRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDY-LLQTTT   79 (133)
Q Consensus         1 l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~l~~   79 (133)
                      +++|++|+++++....-.+..+..+++|+.|+++++ ++..+|.+   .+..+++|++|++++ +.++.+|.+ +..+++
T Consensus        53 l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N-~l~~l~~~---~F~~l~~L~~L~L~~-N~l~~i~~~~f~~l~~  127 (192)
T d1w8aa_          53 LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN-KIKEISNK---MFLGLHQLKTLNLYD-NQISCVMPGSFEHLNS  127 (192)
T ss_dssp             CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC-CCCEECSS---SSTTCTTCCEEECCS-SCCCEECTTSSTTCTT
T ss_pred             CceEeeeeccccccccccccccccccccceeeeccc-cccccCHH---HHhCCCcccccccCC-ccccccCHHHhcCCcc
Confidence            478999999996444433466788999999999996 58888874   688999999999998 568888765 678999


Q ss_pred             ccEEEEecCc
Q 048450           80 LQELTIHRCP   89 (133)
Q Consensus        80 L~~L~i~~c~   89 (133)
                      |+++++++++
T Consensus       128 L~~l~L~~N~  137 (192)
T d1w8aa_         128 LTSLNLASNP  137 (192)
T ss_dssp             CCEEECTTCC
T ss_pred             cccccccccc
Confidence            9999998764

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=98.82  E-value=2.7e-09  Score=74.13  Aligned_cols=83  Identities=25%  Similarity=0.332  Sum_probs=58.5

Q ss_pred             CccEEeecCCCCCc--cCCccCCCCCCccEEEeccCCCCc-cccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCC
Q 048450            3 RLSSLTVGSCNKLK--ALPDYLLQTTALQELSICSCDLLE-ELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTT   79 (133)
Q Consensus         3 ~L~~L~l~~~~~l~--~lp~~~~~l~~L~~L~l~~c~~l~-~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~   79 (133)
                      +++.|+++++..-+  .+|..++++++|++|+++++..+. .+|.    .++++++|++|+++++......|..+..+..
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~----~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~  126 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPP----AIAKLTQLHYLYITHTNVSGAIPDFLSQIKT  126 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCG----GGGGCTTCSEEEEEEECCEEECCGGGGGCTT
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCcccccccccccccccccccc----ccccccccchhhhccccccccccccccchhh
Confidence            46778888753332  577888888888888888755554 7887    7888888888888886543334444556667


Q ss_pred             ccEEEEecCc
Q 048450           80 LQELTIHRCP   89 (133)
Q Consensus        80 L~~L~i~~c~   89 (133)
                      |+.+++.++.
T Consensus       127 L~~l~l~~N~  136 (313)
T d1ogqa_         127 LVTLDFSYNA  136 (313)
T ss_dssp             CCEEECCSSE
T ss_pred             hccccccccc
Confidence            7777777654

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=6.7e-09  Score=66.19  Aligned_cols=80  Identities=14%  Similarity=0.171  Sum_probs=60.9

Q ss_pred             CCccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCC-CCCCCc
Q 048450            2 PRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYL-LQTTTL   80 (133)
Q Consensus         2 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~-~~l~~L   80 (133)
                      .++++|+++++ ++..++.....+++|+.|+++++ .+.+++     .+..+++|++|+++++. +..+|..+ ..+++|
T Consensus        18 ~~lr~L~L~~n-~I~~i~~~~~~l~~L~~L~Ls~N-~i~~l~-----~~~~l~~L~~L~ls~N~-i~~l~~~~~~~l~~L   89 (162)
T d1a9na_          18 VRDRELDLRGY-KIPVIENLGATLDQFDAIDFSDN-EIRKLD-----GFPLLRRLKTLLVNNNR-ICRIGEGLDQALPDL   89 (162)
T ss_dssp             TSCEEEECTTS-CCCSCCCGGGGTTCCSEEECCSS-CCCEEC-----CCCCCSSCCEEECCSSC-CCEECSCHHHHCTTC
T ss_pred             CcCcEEECCCC-CCCccCccccccccCCEEECCCC-CCCccC-----CcccCcchhhhhccccc-ccCCCcccccccccc
Confidence            36788999885 67778755567888999999886 477774     47788889999888854 77777654 457888


Q ss_pred             cEEEEecCc
Q 048450           81 QELTIHRCP   89 (133)
Q Consensus        81 ~~L~i~~c~   89 (133)
                      ++|+++++.
T Consensus        90 ~~L~L~~N~   98 (162)
T d1a9na_          90 TELILTNNS   98 (162)
T ss_dssp             CEEECCSCC
T ss_pred             ccceecccc
Confidence            888888775

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.80  E-value=1.6e-08  Score=69.79  Aligned_cols=112  Identities=14%  Similarity=0.108  Sum_probs=77.0

Q ss_pred             CCccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCCcc
Q 048450            2 PRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTLQ   81 (133)
Q Consensus         2 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~   81 (133)
                      ++|++|+++++......+..+..++.++.|+++++ .+..++..   .+..+++|++|+++++ .++.+|.++..+++|+
T Consensus       171 ~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n-~l~~~~~~---~~~~l~~L~~L~L~~N-~L~~lp~~l~~l~~L~  245 (305)
T d1xkua_         171 PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN-SISAVDNG---SLANTPHLRELHLNNN-KLVKVPGGLADHKYIQ  245 (305)
T ss_dssp             TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSS-CCCEECTT---TGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCC
T ss_pred             CccCEEECCCCcCCCCChhHhhccccccccccccc-cccccccc---cccccccceeeecccc-cccccccccccccCCC
Confidence            46777777776555555556677788888888876 46666543   6777899999999986 5889998899999999


Q ss_pred             EEEEecCchhHHhhcCC--CCCCCcccCCCCceEEcCccc
Q 048450           82 ELTIHRCPLLENRYREG--KGEDWHKISHIPHIKWSITRW  119 (133)
Q Consensus        82 ~L~i~~c~~l~~~~~~~--~~~~~~~i~~l~~l~~~~~~~  119 (133)
                      +|+++++. ++......  .........++..+.+.++++
T Consensus       246 ~L~Ls~N~-i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~  284 (305)
T d1xkua_         246 VVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNPV  284 (305)
T ss_dssp             EEECCSSC-CCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred             EEECCCCc-cCccChhhccCcchhcccCCCCEEECCCCcC
Confidence            99999875 44221110  001112345677777877665

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=2.2e-08  Score=63.34  Aligned_cols=105  Identities=18%  Similarity=0.094  Sum_probs=78.2

Q ss_pred             cEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCc-CCCCCCCccEE
Q 048450            5 SSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPD-YLLQTTTLQEL   83 (133)
Q Consensus         5 ~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L   83 (133)
                      ..++.++ ..+.+.|..+..+++|+.|++.+.+.++.++.+   .+..+++|+.|++++ +.++.++. .+..+++|++|
T Consensus        11 ~~l~c~~-~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~---~f~~l~~L~~L~Ls~-N~l~~i~~~~f~~l~~L~~L   85 (156)
T d2ifga3          11 SGLRCTR-DGALDSLHHLPGAENLTELYIENQQHLQHLELR---DLRGLGELRNLTIVK-SGLRFVAPDAFHFTPRLSRL   85 (156)
T ss_dssp             SCEECCS-SCCCTTTTTSCSCSCCSEEECCSCSSCCEECGG---GSCSCCCCSEEECCS-SCCCEECTTGGGSCSCCCEE
T ss_pred             CeEEecC-CCCccCcccccCccccCeeecCCCccccccCch---hhccccccCcceeec-cccCCcccccccccccccce
Confidence            4456665 456677878888999999999887779999864   688899999999998 45888864 47789999999


Q ss_pred             EEecCchhHHhhcCCCCCCCcccCCCCceEEcCccce
Q 048450           84 TIHRCPLLENRYREGKGEDWHKISHIPHIKWSITRWC  120 (133)
Q Consensus        84 ~i~~c~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~~  120 (133)
                      +++++. ++.     .+..+-....+..|.+.++++.
T Consensus        86 ~Ls~N~-l~~-----l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          86 NLSFNA-LES-----LSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             ECCSSC-CSC-----CCSTTTCSCCCCEEECCSSCCC
T ss_pred             eccCCC-Ccc-----cChhhhccccccccccCCCccc
Confidence            999876 221     1112222235778888887774

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=4.6e-08  Score=66.53  Aligned_cols=110  Identities=25%  Similarity=0.348  Sum_probs=62.7

Q ss_pred             CCCccEEeecCCCCCccCCccCCCCCCccEEEeccCCC-----------------------CccccccccccCCCCCCcc
Q 048450            1 MPRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDL-----------------------LEELPILEDRRTTDIPRLT   57 (133)
Q Consensus         1 l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~-----------------------l~~lp~~~~~~~~~l~~L~   57 (133)
                      +++|++|+++++ .+..++..+..+++|+.|+++++..                       +..+|..   .+..+++++
T Consensus        76 l~~L~~L~Ls~N-~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~---~~~~l~~l~  151 (266)
T d1p9ag_          76 LPVLGTLDLSHN-QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPG---LLTPTPKLE  151 (266)
T ss_dssp             CTTCCEEECCSS-CCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTT---TTTTCTTCC
T ss_pred             cccccccccccc-cccccccccccccccccccccccccceeeccccccccccccccccccccceeccc---cccccccch
Confidence            467777777775 5555666666677777777765431                       2222221   334456666


Q ss_pred             EEeecCCCCCCccCc-CCCCCCCccEEEEecCchhHHhhcCCCCCCCcccCCCCceEEcCcccee
Q 048450           58 SLWISDCPNLKVLPD-YLLQTTTLQELTIHRCPLLENRYREGKGEDWHKISHIPHIKWSITRWCC  121 (133)
Q Consensus        58 ~L~l~~c~~l~~lp~-~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~  121 (133)
                      .++++++ .+..+|. .+..+++|++|+++++. ++.     .+..+....+++.|.+.+++|-|
T Consensus       152 ~l~l~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~-L~~-----lp~~~~~~~~L~~L~L~~Np~~C  209 (266)
T d1p9ag_         152 KLSLANN-NLTELPAGLLNGLENLDTLLLQENS-LYT-----IPKGFFGSHLLPFAFLHGNPWLC  209 (266)
T ss_dssp             EEECTTS-CCSCCCTTTTTTCTTCCEEECCSSC-CCC-----CCTTTTTTCCCSEEECCSCCBCC
T ss_pred             hcccccc-cccccCccccccccccceeecccCC-Ccc-----cChhHCCCCCCCEEEecCCCCCC
Confidence            6766663 3555553 35566777777777654 331     22233345566677777766643

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=4.3e-09  Score=67.11  Aligned_cols=82  Identities=20%  Similarity=0.244  Sum_probs=67.4

Q ss_pred             CCCccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCc--CCCCCC
Q 048450            1 MPRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPD--YLLQTT   78 (133)
Q Consensus         1 l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~--~~~~l~   78 (133)
                      +++|+.|+++++ .+..++ ++..+++|+.|++++|. +..++..   .+..+++|++|+++++ .+..++.  .+..++
T Consensus        40 l~~L~~L~Ls~N-~i~~l~-~~~~l~~L~~L~ls~N~-i~~l~~~---~~~~l~~L~~L~L~~N-~i~~~~~l~~l~~l~  112 (162)
T d1a9na_          40 LDQFDAIDFSDN-EIRKLD-GFPLLRRLKTLLVNNNR-ICRIGEG---LDQALPDLTELILTNN-SLVELGDLDPLASLK  112 (162)
T ss_dssp             TTCCSEEECCSS-CCCEEC-CCCCCSSCCEEECCSSC-CCEECSC---HHHHCTTCCEEECCSC-CCCCGGGGGGGGGCT
T ss_pred             cccCCEEECCCC-CCCccC-CcccCcchhhhhccccc-ccCCCcc---ccccccccccceeccc-ccccccccccccccc
Confidence            468999999996 788886 68899999999999975 8888762   2456999999999985 4666663  467789


Q ss_pred             CccEEEEecCc
Q 048450           79 TLQELTIHRCP   89 (133)
Q Consensus        79 ~L~~L~i~~c~   89 (133)
                      +|+++++++|+
T Consensus       113 ~L~~L~l~~N~  123 (162)
T d1a9na_         113 SLTYLCILRNP  123 (162)
T ss_dssp             TCCEEECCSSG
T ss_pred             ccchhhcCCCc
Confidence            99999999987

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=98.75  E-value=2.2e-09  Score=74.64  Aligned_cols=85  Identities=22%  Similarity=0.210  Sum_probs=62.0

Q ss_pred             CCCccEEeecCCCCCc-cCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCC
Q 048450            1 MPRLSSLTVGSCNKLK-ALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTT   79 (133)
Q Consensus         1 l~~L~~L~l~~~~~l~-~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~   79 (133)
                      +++|++|++++++.+. .+|..++++++|++|+++++. +..++..   .+..+..|+.+++..+.....+|..+..++.
T Consensus        75 L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~-l~~~~~~---~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~  150 (313)
T d1ogqa_          75 LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTN-VSGAIPD---FLSQIKTLVTLDFSYNALSGTLPPSISSLPN  150 (313)
T ss_dssp             CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEEC-CEEECCG---GGGGCTTCCEEECCSSEEESCCCGGGGGCTT
T ss_pred             Cccccccccccccccccccccccccccccchhhhcccc-ccccccc---cccchhhhcccccccccccccCchhhccCcc
Confidence            5789999999865554 899999999999999999975 4443331   4556677777777766666666666666777


Q ss_pred             ccEEEEecCc
Q 048450           80 LQELTIHRCP   89 (133)
Q Consensus        80 L~~L~i~~c~   89 (133)
                      ++.++++++.
T Consensus       151 L~~l~l~~n~  160 (313)
T d1ogqa_         151 LVGITFDGNR  160 (313)
T ss_dssp             CCEEECCSSC
T ss_pred             cceeeccccc
Confidence            7777766553

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=8e-08  Score=65.29  Aligned_cols=81  Identities=25%  Similarity=0.231  Sum_probs=56.6

Q ss_pred             CCCccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCCc
Q 048450            1 MPRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTL   80 (133)
Q Consensus         1 l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L   80 (133)
                      +++|++|+++++ .+..+| .++.+++|+.|+++++. +..++.    .+..+++|+.|+++++......+..+..+.++
T Consensus        54 l~~L~~L~L~~N-~l~~l~-~~~~l~~L~~L~Ls~N~-l~~~~~----~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l  126 (266)
T d1p9ag_          54 YTRLTQLNLDRA-ELTKLQ-VDGTLPVLGTLDLSHNQ-LQSLPL----LGQTLPALTVLDVSFNRLTSLPLGALRGLGEL  126 (266)
T ss_dssp             CTTCCEEECTTS-CCCEEE-CCSCCTTCCEEECCSSC-CSSCCC----CTTTCTTCCEEECCSSCCCCCCSSTTTTCTTC
T ss_pred             cccccccccccc-cccccc-ccccccccccccccccc-cccccc----ccccccccccccccccccceeecccccccccc
Confidence            478999999996 788887 45789999999999964 777777    67778888888887754322222223344455


Q ss_pred             cEEEEecC
Q 048450           81 QELTIHRC   88 (133)
Q Consensus        81 ~~L~i~~c   88 (133)
                      +.|++.++
T Consensus       127 ~~L~l~~n  134 (266)
T d1p9ag_         127 QELYLKGN  134 (266)
T ss_dssp             CEEECTTS
T ss_pred             cccccccc
Confidence            55555443

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=4e-08  Score=67.29  Aligned_cols=89  Identities=13%  Similarity=0.135  Sum_probs=39.5

Q ss_pred             CCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCCccEEEEecCchhHHhhcCCCCCC
Q 048450           23 LQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTLQELTIHRCPLLENRYREGKGED  102 (133)
Q Consensus        23 ~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~  102 (133)
                      ..+++|+.|++.++ .+..++..   .+..+++|+++.+.++....-.|..+..+++|++|+++++.--.     .....
T Consensus       150 ~~~~~L~~L~l~~N-~l~~l~~~---~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~-----~~~~~  220 (284)
T d1ozna_         150 RDLGNLTHLFLHGN-RISSVPER---AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA-----LPTEA  220 (284)
T ss_dssp             TTCTTCCEEECCSS-CCCEECTT---TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC-----CCHHH
T ss_pred             ccccchhhcccccC-cccccchh---hhccccccchhhhhhccccccChhHhhhhhhccccccccccccc-----ccccc
Confidence            34444555555443 24444332   34445555555555433222224445555555555555543111     00111


Q ss_pred             CcccCCCCceEEcCccce
Q 048450          103 WHKISHIPHIKWSITRWC  120 (133)
Q Consensus       103 ~~~i~~l~~l~~~~~~~~  120 (133)
                      +..+..+..+.+.++++-
T Consensus       221 ~~~~~~L~~L~l~~N~l~  238 (284)
T d1ozna_         221 LAPLRALQYLRLNDNPWV  238 (284)
T ss_dssp             HTTCTTCCEEECCSSCEE
T ss_pred             cccccccCEEEecCCCCC
Confidence            234455566666665553

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.64  E-value=6.2e-08  Score=63.24  Aligned_cols=53  Identities=9%  Similarity=0.271  Sum_probs=23.8

Q ss_pred             CccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecC
Q 048450            3 RLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISD   63 (133)
Q Consensus         3 ~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~   63 (133)
                      ++++|+++++ .+..++ ++..+++|++|+++++ ++..++.     ++.+++|++|++.+
T Consensus        41 ~l~~L~l~~~-~i~~l~-~l~~l~nL~~L~Ls~N-~l~~~~~-----l~~l~~L~~L~l~~   93 (199)
T d2omxa2          41 QVTTLQADRL-GIKSID-GVEYLNNLTQINFSNN-QLTDITP-----LKNLTKLVDILMNN   93 (199)
T ss_dssp             TCCEEECTTS-CCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-----GTTCTTCCEEECCS
T ss_pred             CCCEEECCCC-CCCCcc-ccccCCCcCcCccccc-cccCccc-----ccCCcccccccccc
Confidence            4445555543 333333 3444555555555553 2444332     34444444444444

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.64  E-value=4.8e-08  Score=64.84  Aligned_cols=78  Identities=22%  Similarity=0.282  Sum_probs=49.9

Q ss_pred             CCccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCCcc
Q 048450            2 PRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTLQ   81 (133)
Q Consensus         2 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~   81 (133)
                      +.++.+.++++. +...+ .+...++|+.|++.++. +...+     .++.+++|+.|+++++ .+++++. +.++++|+
T Consensus       129 ~~~~~l~~~~~~-~~~~~-~~~~~~~L~~L~l~~n~-~~~~~-----~l~~l~~L~~L~Ls~n-~l~~l~~-l~~l~~L~  198 (227)
T d1h6ua2         129 SNLQVLYLDLNQ-ITNIS-PLAGLTNLQYLSIGNAQ-VSDLT-----PLANLSKLTTLKADDN-KISDISP-LASLPNLI  198 (227)
T ss_dssp             TTCCEEECCSSC-CCCCG-GGGGCTTCCEEECCSSC-CCCCG-----GGTTCTTCCEEECCSS-CCCCCGG-GGGCTTCC
T ss_pred             cchhhhhchhhh-hchhh-hhccccccccccccccc-cccch-----hhcccccceecccCCC-ccCCChh-hcCCCCCC
Confidence            345566666643 32222 34566778888887754 44443     3667788888888775 4667654 56677888


Q ss_pred             EEEEecCc
Q 048450           82 ELTIHRCP   89 (133)
Q Consensus        82 ~L~i~~c~   89 (133)
                      +|++++|.
T Consensus       199 ~L~Ls~N~  206 (227)
T d1h6ua2         199 EVHLKNNQ  206 (227)
T ss_dssp             EEECTTSC
T ss_pred             EEECcCCc
Confidence            88888774

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.57  E-value=2.3e-07  Score=60.45  Aligned_cols=78  Identities=15%  Similarity=0.215  Sum_probs=53.6

Q ss_pred             CCCccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCCc
Q 048450            1 MPRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTL   80 (133)
Q Consensus         1 l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L   80 (133)
                      +++|++|+++++ .+..++ .++++++|+.|++.++. +..++.     ++.+++|+.|+++++... .++ .+..+++|
T Consensus        61 l~nL~~L~Ls~N-~l~~~~-~l~~l~~L~~L~l~~n~-~~~~~~-----l~~l~~L~~L~l~~~~~~-~~~-~~~~l~~L  130 (199)
T d2omxa2          61 LNNLTQINFSNN-QLTDIT-PLKNLTKLVDILMNNNQ-IADITP-----LANLTNLTGLTLFNNQIT-DID-PLKNLTNL  130 (199)
T ss_dssp             CTTCCEEECCSS-CCCCCG-GGTTCTTCCEEECCSSC-CCCCGG-----GTTCTTCSEEECCSSCCC-CCG-GGTTCTTC
T ss_pred             CCCcCcCccccc-cccCcc-cccCCcccccccccccc-cccccc-----cccccccccccccccccc-ccc-ccchhhhh
Confidence            578999999996 677776 47888999999998864 555543     556777777777665432 222 24456667


Q ss_pred             cEEEEecC
Q 048450           81 QELTIHRC   88 (133)
Q Consensus        81 ~~L~i~~c   88 (133)
                      +.++++++
T Consensus       131 ~~L~l~~n  138 (199)
T d2omxa2         131 NRLELSSN  138 (199)
T ss_dssp             SEEECCSS
T ss_pred             HHhhhhhh
Confidence            77766655

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.52  E-value=8.4e-08  Score=67.47  Aligned_cols=98  Identities=11%  Similarity=0.214  Sum_probs=63.9

Q ss_pred             CCccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCCcc
Q 048450            2 PRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTLQ   81 (133)
Q Consensus         2 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~   81 (133)
                      +.++.+.+..+ .+..++ .+..+++++.|+++++ ++..++.     +..+++|++|++++| .++.++ .+.++++|+
T Consensus       285 ~~l~~l~~~~n-~l~~~~-~~~~~~~l~~L~ls~n-~l~~l~~-----l~~l~~L~~L~L~~n-~l~~l~-~l~~l~~L~  354 (384)
T d2omza2         285 TALTNLELNEN-QLEDIS-PISNLKNLTYLTLYFN-NISDISP-----VSSLTKLQRLFFANN-KVSDVS-SLANLTNIN  354 (384)
T ss_dssp             TTCSEEECCSS-CCSCCG-GGGGCTTCSEEECCSS-CCSCCGG-----GGGCTTCCEEECCSS-CCCCCG-GGGGCTTCC
T ss_pred             ccccccccccc-cccccc-ccchhcccCeEECCCC-CCCCCcc-----cccCCCCCEEECCCC-CCCCCh-hHcCCCCCC
Confidence            45566666664 444444 4567788888888876 4666653     567888888888886 467766 467788888


Q ss_pred             EEEEecCchhHHhhcCCCCCCCcccCCCCceEEcC
Q 048450           82 ELTIHRCPLLENRYREGKGEDWHKISHIPHIKWSI  116 (133)
Q Consensus        82 ~L~i~~c~~l~~~~~~~~~~~~~~i~~l~~l~~~~  116 (133)
                      +|+++++. +...      ..+..+++++.|.+.+
T Consensus       355 ~L~l~~N~-l~~l------~~l~~l~~L~~L~L~~  382 (384)
T d2omza2         355 WLSAGHNQ-ISDL------TPLANLTRITQLGLND  382 (384)
T ss_dssp             EEECCSSC-CCBC------GGGTTCTTCSEEECCC
T ss_pred             EEECCCCc-CCCC------hhhccCCCCCEeeCCC
Confidence            88888764 3211      1134456666666654

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.51  E-value=1.3e-07  Score=62.23  Aligned_cols=77  Identities=13%  Similarity=0.239  Sum_probs=54.6

Q ss_pred             CccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCCccE
Q 048450            3 RLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTLQE   82 (133)
Q Consensus         3 ~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~   82 (133)
                      +|+.|+++++ .+..++ ++..+++|+.|+++++. ++.++.     ++.+++|++|+++++ .++.+| .+..+++|+.
T Consensus        47 ~L~~L~l~~~-~i~~l~-~l~~l~~L~~L~L~~n~-i~~l~~-----~~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~  116 (210)
T d1h6ta2          47 SIDQIIANNS-DIKSVQ-GIQYLPNVTKLFLNGNK-LTDIKP-----LANLKNLGWLFLDEN-KVKDLS-SLKDLKKLKS  116 (210)
T ss_dssp             TCCEEECTTS-CCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-----GTTCTTCCEEECCSS-CCCCGG-GGTTCTTCCE
T ss_pred             CccEEECcCC-CCCCch-hHhhCCCCCEEeCCCcc-ccCccc-----cccCccccccccccc-cccccc-cccccccccc
Confidence            5777878775 555565 56778888888888763 666654     567788888888774 466776 3566778888


Q ss_pred             EEEecCc
Q 048450           83 LTIHRCP   89 (133)
Q Consensus        83 L~i~~c~   89 (133)
                      |++.++.
T Consensus       117 L~l~~~~  123 (210)
T d1h6ta2         117 LSLEHNG  123 (210)
T ss_dssp             EECTTSC
T ss_pred             ccccccc
Confidence            8887764

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=5e-07  Score=61.65  Aligned_cols=104  Identities=20%  Similarity=0.304  Sum_probs=59.6

Q ss_pred             CCccEEeecCCCCCccCC-ccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCc-CCCCCCC
Q 048450            2 PRLSSLTVGSCNKLKALP-DYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPD-YLLQTTT   79 (133)
Q Consensus         2 ~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~l~~   79 (133)
                      ++|++|+++++. +..++ ..+...++|+.+++.++ .++.+|..   .+..+++|+.|++.++ .++.+|. .+..+++
T Consensus       105 ~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~l~l~~N-~l~~i~~~---~f~~~~~L~~L~l~~N-~l~~l~~~~f~~l~~  178 (284)
T d1ozna_         105 GRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDN-ALQALPDD---TFRDLGNLTHLFLHGN-RISSVPERAFRGLHS  178 (284)
T ss_dssp             TTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTT---TTTTCTTCCEEECCSS-CCCEECTTTTTTCTT
T ss_pred             ccCCEEecCCcc-cccccccccchhcccchhhhccc-cccccChh---HhccccchhhcccccC-cccccchhhhccccc
Confidence            456666666653 33333 34455666677776663 36666542   4566777777777774 4566643 4556777


Q ss_pred             ccEEEEecCchhHHhhcCCCCCCCcccCCCCceEEcC
Q 048450           80 LQELTIHRCPLLENRYREGKGEDWHKISHIPHIKWSI  116 (133)
Q Consensus        80 L~~L~i~~c~~l~~~~~~~~~~~~~~i~~l~~l~~~~  116 (133)
                      |+.+++.++....     ..+..+..+.++..+.+.+
T Consensus       179 L~~l~l~~N~l~~-----i~~~~f~~l~~L~~L~l~~  210 (284)
T d1ozna_         179 LDRLLLHQNRVAH-----VHPHAFRDLGRLMTLYLFA  210 (284)
T ss_dssp             CCEEECCSSCCCE-----ECTTTTTTCTTCCEEECCS
T ss_pred             cchhhhhhccccc-----cChhHhhhhhhcccccccc
Confidence            7777777665221     1122344555666666554

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=3.3e-09  Score=73.18  Aligned_cols=38  Identities=34%  Similarity=0.399  Sum_probs=16.2

Q ss_pred             CCccEEeecCCCCCCc-cCcCCCCCCCccEEEEecCchh
Q 048450           54 PRLTSLWISDCPNLKV-LPDYLLQTTTLQELTIHRCPLL   91 (133)
Q Consensus        54 ~~L~~L~l~~c~~l~~-lp~~~~~l~~L~~L~i~~c~~l   91 (133)
                      ++|++|++++|+.++. ....+..+++|++|++++|..+
T Consensus       175 ~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i  213 (284)
T d2astb2         175 PNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDI  213 (284)
T ss_dssp             TTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTC
T ss_pred             ccccccccccccCCCchhhhhhcccCcCCEEECCCCCCC
Confidence            4444444444444331 1223334444555555544433

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=8e-07  Score=59.01  Aligned_cols=84  Identities=20%  Similarity=0.221  Sum_probs=65.2

Q ss_pred             CCccEEeecCCCCCccCCcc-CCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcC-CCCCCC
Q 048450            2 PRLSSLTVGSCNKLKALPDY-LLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDY-LLQTTT   79 (133)
Q Consensus         2 ~~L~~L~l~~~~~l~~lp~~-~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~l~~   79 (133)
                      +++++|+++++ .+..+|.. +.++++|++|+++++.....++.+   .+..++.++++.+..++.+..++.. +..+++
T Consensus        29 ~~l~~L~Ls~n-~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~---~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~  104 (242)
T d1xwdc1          29 RNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEAD---VFSNLPKLHEIRIEKANNLLYINPEAFQNLPN  104 (242)
T ss_dssp             SCCSEEEEESC-CCCEECTTTTTTCTTCCEEEEESCTTCCEECSS---SEESCTTCCEEEEECCTTCCEECTTSEECCTT
T ss_pred             CCCCEEECcCC-cCCccChhHhhccchhhhhhhccccccceeecc---cccccccccccccccccccccccccccccccc
Confidence            36889999985 67888854 678999999999987766666553   5667888999988887777776644 577889


Q ss_pred             ccEEEEecCc
Q 048450           80 LQELTIHRCP   89 (133)
Q Consensus        80 L~~L~i~~c~   89 (133)
                      |+++++.++.
T Consensus       105 L~~l~l~~~~  114 (242)
T d1xwdc1         105 LQYLLISNTG  114 (242)
T ss_dssp             CCEEEEESCC
T ss_pred             ccccccchhh
Confidence            9999998864

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.42  E-value=5.8e-07  Score=61.74  Aligned_cols=102  Identities=17%  Similarity=0.183  Sum_probs=73.2

Q ss_pred             CCCccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccC-cCCCCCCC
Q 048450            1 MPRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLP-DYLLQTTT   79 (133)
Q Consensus         1 l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp-~~~~~l~~   79 (133)
                      +++|+.+++.++ .+..+|..  .+++|+.|++.++......+.    .+..++.++.|.++++ .+..++ ..+.++++
T Consensus       149 l~~L~~l~l~~n-~l~~l~~~--~~~~L~~L~l~~n~~~~~~~~----~~~~~~~l~~L~~s~n-~l~~~~~~~~~~l~~  220 (305)
T d1xkua_         149 MKKLSYIRIADT-NITTIPQG--LPPSLTELHLDGNKITKVDAA----SLKGLNNLAKLGLSFN-SISAVDNGSLANTPH  220 (305)
T ss_dssp             CTTCCEEECCSS-CCCSCCSS--CCTTCSEEECTTSCCCEECTG----GGTTCTTCCEEECCSS-CCCEECTTTGGGSTT
T ss_pred             ccccCccccccC-CccccCcc--cCCccCEEECCCCcCCCCChh----Hhhccccccccccccc-ccccccccccccccc
Confidence            357888888885 56667644  367899999998765555555    7788899999999886 466664 55678899


Q ss_pred             ccEEEEecCchhHHhhcCCCCCCCcccCCCCceEEcC
Q 048450           80 LQELTIHRCPLLENRYREGKGEDWHKISHIPHIKWSI  116 (133)
Q Consensus        80 L~~L~i~~c~~l~~~~~~~~~~~~~~i~~l~~l~~~~  116 (133)
                      |++|+++++. ++.     .+..+..++++..|.+.+
T Consensus       221 L~~L~L~~N~-L~~-----lp~~l~~l~~L~~L~Ls~  251 (305)
T d1xkua_         221 LRELHLNNNK-LVK-----VPGGLADHKYIQVVYLHN  251 (305)
T ss_dssp             CCEEECCSSC-CSS-----CCTTTTTCSSCCEEECCS
T ss_pred             ceeeeccccc-ccc-----cccccccccCCCEEECCC
Confidence            9999999985 432     223345566777777665

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.42  E-value=2.6e-07  Score=64.89  Aligned_cols=78  Identities=13%  Similarity=0.248  Sum_probs=62.7

Q ss_pred             CCccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCCcc
Q 048450            2 PRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTLQ   81 (133)
Q Consensus         2 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~   81 (133)
                      .+|++|+++++ .+.++. ++..+++|++|+++++ +++.++.     ++.+++|++|+++++. +..+++ +..+++|+
T Consensus        44 ~~l~~L~l~~~-~I~~l~-gl~~L~nL~~L~Ls~N-~l~~l~~-----l~~L~~L~~L~L~~n~-i~~i~~-l~~l~~L~  113 (384)
T d2omza2          44 DQVTTLQADRL-GIKSID-GVEYLNNLTQINFSNN-QLTDITP-----LKNLTKLVDILMNNNQ-IADITP-LANLTNLT  113 (384)
T ss_dssp             TTCCEEECCSS-CCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-----GTTCTTCCEEECCSSC-CCCCGG-GTTCTTCC
T ss_pred             CCCCEEECCCC-CCCCcc-ccccCCCCCEEeCcCC-cCCCCcc-----ccCCcccccccccccc-cccccc-cccccccc
Confidence            57899999885 677774 7788999999999996 4888874     7789999999999865 666653 67788999


Q ss_pred             EEEEecCc
Q 048450           82 ELTIHRCP   89 (133)
Q Consensus        82 ~L~i~~c~   89 (133)
                      .+++.++.
T Consensus       114 ~L~~~~~~  121 (384)
T d2omza2         114 GLTLFNNQ  121 (384)
T ss_dssp             EEECCSSC
T ss_pred             cccccccc
Confidence            99887654

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.35  E-value=8e-07  Score=58.28  Aligned_cols=79  Identities=18%  Similarity=0.300  Sum_probs=60.5

Q ss_pred             CCCccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCCc
Q 048450            1 MPRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTL   80 (133)
Q Consensus         1 l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L   80 (133)
                      +++|+.|+++++. ...++ .+..+++++.+++.++. +...+     ....+++|++++++++ .+..++. +.++++|
T Consensus       111 l~~L~~L~l~~~~-~~~~~-~l~~l~~l~~l~~~~n~-l~~~~-----~~~~l~~L~~l~l~~n-~l~~i~~-l~~l~~L  180 (210)
T d1h6ta2         111 LKKLKSLSLEHNG-ISDIN-GLVHLPQLESLYLGNNK-ITDIT-----VLSRLTKLDTLSLEDN-QISDIVP-LAGLTKL  180 (210)
T ss_dssp             CTTCCEEECTTSC-CCCCG-GGGGCTTCCEEECCSSC-CCCCG-----GGGGCTTCSEEECCSS-CCCCCGG-GTTCTTC
T ss_pred             ccccccccccccc-ccccc-ccccccccccccccccc-ccccc-----cccccccccccccccc-ccccccc-ccCCCCC
Confidence            4689999999864 44555 56788899999998864 55544     3567889999999886 4667764 6788999


Q ss_pred             cEEEEecCc
Q 048450           81 QELTIHRCP   89 (133)
Q Consensus        81 ~~L~i~~c~   89 (133)
                      ++|+++++.
T Consensus       181 ~~L~Ls~N~  189 (210)
T d1h6ta2         181 QNLYLSKNH  189 (210)
T ss_dssp             CEEECCSSC
T ss_pred             CEEECCCCC
Confidence            999999874

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.23  E-value=1.4e-06  Score=60.13  Aligned_cols=56  Identities=32%  Similarity=0.473  Sum_probs=41.1

Q ss_pred             CCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCCccEEEEecCchhH
Q 048450           24 QTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTLQELTIHRCPLLE   92 (133)
Q Consensus        24 ~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~i~~c~~l~   92 (133)
                      .+++|++|++++|. +..+|.    .   +++|+.|+++++ .++.+|+.   +++|++|++++|+ ++
T Consensus       282 ~~~~L~~L~Ls~N~-l~~lp~----~---~~~L~~L~L~~N-~L~~l~~~---~~~L~~L~L~~N~-L~  337 (353)
T d1jl5a_         282 LPPSLEELNVSNNK-LIELPA----L---PPRLERLIASFN-HLAEVPEL---PQNLKQLHVEYNP-LR  337 (353)
T ss_dssp             CCTTCCEEECCSSC-CSCCCC----C---CTTCCEEECCSS-CCSCCCCC---CTTCCEEECCSSC-CS
T ss_pred             cCCCCCEEECCCCc-cCcccc----c---cCCCCEEECCCC-cCCccccc---cCCCCEEECcCCc-CC
Confidence            45788888888864 777776    3   567888888764 57788753   3578888888876 44

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.19  E-value=2.5e-06  Score=56.29  Aligned_cols=79  Identities=16%  Similarity=0.181  Sum_probs=46.4

Q ss_pred             CCCccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCCc
Q 048450            1 MPRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTL   80 (133)
Q Consensus         1 l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L   80 (133)
                      +++|+.+.++++.. ..++ .+...+.++.+.+.++. +...+     .+..+++|++|.+.++. +..++ .+.++++|
T Consensus       106 l~~L~~l~l~~~~~-~~~~-~~~~~~~~~~l~~~~~~-~~~~~-----~~~~~~~L~~L~l~~n~-~~~~~-~l~~l~~L  175 (227)
T d1h6ua2         106 LQSIKTLDLTSTQI-TDVT-PLAGLSNLQVLYLDLNQ-ITNIS-----PLAGLTNLQYLSIGNAQ-VSDLT-PLANLSKL  175 (227)
T ss_dssp             CTTCCEEECTTSCC-CCCG-GGTTCTTCCEEECCSSC-CCCCG-----GGGGCTTCCEEECCSSC-CCCCG-GGTTCTTC
T ss_pred             cccccccccccccc-cccc-hhccccchhhhhchhhh-hchhh-----hhccccccccccccccc-cccch-hhcccccc
Confidence            35677777776533 2232 34455677777776654 33332     24456777777776643 44433 25667778


Q ss_pred             cEEEEecCc
Q 048450           81 QELTIHRCP   89 (133)
Q Consensus        81 ~~L~i~~c~   89 (133)
                      +.|+++++.
T Consensus       176 ~~L~Ls~n~  184 (227)
T d1h6ua2         176 TTLKADDNK  184 (227)
T ss_dssp             CEEECCSSC
T ss_pred             eecccCCCc
Confidence            888877763

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.04  E-value=1.6e-05  Score=54.56  Aligned_cols=76  Identities=26%  Similarity=0.410  Sum_probs=44.1

Q ss_pred             CccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCC----------------CC-CCccEEeecCCC
Q 048450            3 RLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTT----------------DI-PRLTSLWISDCP   65 (133)
Q Consensus         3 ~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~----------------~l-~~L~~L~l~~c~   65 (133)
                      ++++|+++++ .++.+|+.   .++|++|+++++ +++++|.    .++                .+ +.|++|+++++ 
T Consensus        39 ~l~~LdLs~~-~L~~lp~~---~~~L~~L~Ls~N-~l~~lp~----~~~~L~~L~l~~n~l~~l~~lp~~L~~L~L~~n-  108 (353)
T d1jl5a_          39 QAHELELNNL-GLSSLPEL---PPHLESLVASCN-SLTELPE----LPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNN-  108 (353)
T ss_dssp             TCSEEECTTS-CCSCCCSC---CTTCSEEECCSS-CCSSCCC----CCTTCCEEECCSSCCSCCCSCCTTCCEEECCSS-
T ss_pred             CCCEEEeCCC-CCCCCCCC---CCCCCEEECCCC-CCccccc----chhhhhhhhhhhcccchhhhhcccccccccccc-
Confidence            4566666664 45666632   345666666653 4555654    221                11 34677777664 


Q ss_pred             CCCccCcCCCCCCCccEEEEecCc
Q 048450           66 NLKVLPDYLLQTTTLQELTIHRCP   89 (133)
Q Consensus        66 ~l~~lp~~~~~l~~L~~L~i~~c~   89 (133)
                      .+..+|. .+.+++|+.|+++++.
T Consensus       109 ~l~~lp~-~~~l~~L~~L~l~~~~  131 (353)
T d1jl5a_         109 QLEKLPE-LQNSSFLKIIDVDNNS  131 (353)
T ss_dssp             CCSSCCC-CTTCTTCCEEECCSSC
T ss_pred             ccccccc-hhhhccceeecccccc
Confidence            4666664 4567778888777654

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.03  E-value=1.3e-08  Score=66.88  Aligned_cols=85  Identities=16%  Similarity=0.238  Sum_probs=47.8

Q ss_pred             CCCccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccc------------------cccCCCCCCccEEeec
Q 048450            1 MPRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILE------------------DRRTTDIPRLTSLWIS   62 (133)
Q Consensus         1 l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~------------------~~~~~~l~~L~~L~l~   62 (133)
                      +++|++|+++++ .+..++ .+..+++|+.|++++|. ++.+|...                  ...+..+++|+.|+++
T Consensus        47 L~~L~~L~Ls~n-~I~~i~-~l~~l~~L~~L~Ls~N~-i~~i~~~~~~~~~L~~L~l~~N~i~~l~~~~~l~~L~~L~L~  123 (198)
T d1m9la_          47 LKACKHLALSTN-NIEKIS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMS  123 (198)
T ss_dssp             TTTCCEEECSEE-EESCCC-CHHHHTTCCEEECCEEE-ECSCSSHHHHHHHCCEEECSEEECCCHHHHHHHHHSSEEEES
T ss_pred             ccccceeECccc-CCCCcc-cccCCccccChhhcccc-cccccccccccccccccccccccccccccccccccccccccc
Confidence            457778888774 566665 46677778888877753 55554310                  0012234555666665


Q ss_pred             CCCCCCccC--cCCCCCCCccEEEEecCc
Q 048450           63 DCPNLKVLP--DYLLQTTTLQELTIHRCP   89 (133)
Q Consensus        63 ~c~~l~~lp--~~~~~l~~L~~L~i~~c~   89 (133)
                      ++ .+..++  ..+..+++|+.|++++++
T Consensus       124 ~N-~i~~~~~~~~l~~l~~L~~L~L~~N~  151 (198)
T d1m9la_         124 NN-KITNWGEIDKLAALDKLEDLLLAGNP  151 (198)
T ss_dssp             EE-ECCCHHHHHHHTTTTTCSEEEECSSH
T ss_pred             cc-hhccccccccccCCCccceeecCCCc
Confidence            53 244443  234556666666666665

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.00  E-value=1.4e-06  Score=59.61  Aligned_cols=83  Identities=18%  Similarity=0.197  Sum_probs=61.7

Q ss_pred             CCccEEeecCCCC-Ccc--CCccCCCCCCccEEEeccCCCCccc-cccccccCCCCCCccEEeecCCCCCCcc-CcCCCC
Q 048450            2 PRLSSLTVGSCNK-LKA--LPDYLLQTTALQELSICSCDLLEEL-PILEDRRTTDIPRLTSLWISDCPNLKVL-PDYLLQ   76 (133)
Q Consensus         2 ~~L~~L~l~~~~~-l~~--lp~~~~~l~~L~~L~l~~c~~l~~l-p~~~~~~~~~l~~L~~L~l~~c~~l~~l-p~~~~~   76 (133)
                      ++|+.|++++|.. +..  +...+.++++|+.|++++|..++.- ..    .+..+++|++|++++|+.+..- ...+.+
T Consensus       148 ~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~----~l~~~~~L~~L~L~~C~~i~~~~l~~L~~  223 (284)
T d2astb2         148 ETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ----EFFQLNYLQHLSLSRCYDIIPETLLELGE  223 (284)
T ss_dssp             TTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGG----GGGGCTTCCEEECTTCTTCCGGGGGGGGG
T ss_pred             cccchhhhcccccccccccccccccccccccccccccccCCCchhhh----hhcccCcCCEEECCCCCCCChHHHHHHhc
Confidence            5799999998632 322  2223356789999999999877632 23    6778899999999999877542 234567


Q ss_pred             CCCccEEEEecC
Q 048450           77 TTTLQELTIHRC   88 (133)
Q Consensus        77 l~~L~~L~i~~c   88 (133)
                      +++|+.|++++|
T Consensus       224 ~~~L~~L~l~~~  235 (284)
T d2astb2         224 IPTLKTLQVFGI  235 (284)
T ss_dssp             CTTCCEEECTTS
T ss_pred             CCCCCEEeeeCC
Confidence            889999999988

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.98  E-value=7.4e-06  Score=54.15  Aligned_cols=72  Identities=18%  Similarity=0.148  Sum_probs=51.0

Q ss_pred             CCCccCCc-cCCCC-CCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcC-CCCCCCccEEEEecCc
Q 048450           13 NKLKALPD-YLLQT-TALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDY-LLQTTTLQELTIHRCP   89 (133)
Q Consensus        13 ~~l~~lp~-~~~~l-~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~l~~L~~L~i~~c~   89 (133)
                      ..+..++. .+..+ ..++.|++.+ ..+..++.    .....++++.+....++.++.+|.. +.++++|++|++++++
T Consensus       138 ~~l~~i~~~~~~~~~~~l~~L~l~~-n~l~~i~~----~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~  212 (242)
T d1xwdc1         138 INIHTIERNSFVGLSFESVILWLNK-NGIQEIHN----CAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR  212 (242)
T ss_dssp             TTCCEECTTSSTTSBSSCEEEECCS-SCCCEECT----TTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSC
T ss_pred             cccccccccccccccccceeeeccc-cccccccc----ccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCc
Confidence            45666652 33333 3677788876 45778877    5666777777776666788889865 5778999999998875

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=97.91  E-value=1.7e-08  Score=66.25  Aligned_cols=77  Identities=16%  Similarity=0.202  Sum_probs=53.9

Q ss_pred             cEEeecC-CCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCCccEE
Q 048450            5 SSLTVGS-CNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTLQEL   83 (133)
Q Consensus         5 ~~L~l~~-~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L   83 (133)
                      +.+.+.+ .+.++.++..+..+++|++|+++++. ++.++     .+..+++|+.|+++++ .++.+|......++|+.|
T Consensus        26 ~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~-I~~i~-----~l~~l~~L~~L~Ls~N-~i~~i~~~~~~~~~L~~L   98 (198)
T d1m9la_          26 EKVELHGMIPPIEKMDATLSTLKACKHLALSTNN-IEKIS-----SLSGMENLRILSLGRN-LIKKIENLDAVADTLEEL   98 (198)
T ss_dssp             SCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEE-ESCCC-----CHHHHTTCCEEECCEE-EECSCSSHHHHHHHCCEE
T ss_pred             ceeeeecccCchhhhhhHHhcccccceeECcccC-CCCcc-----cccCCccccChhhccc-cccccccccccccccccc
Confidence            4455543 34566677778889999999999864 77775     4677899999999885 466666433334457777


Q ss_pred             EEecC
Q 048450           84 TIHRC   88 (133)
Q Consensus        84 ~i~~c   88 (133)
                      +++++
T Consensus        99 ~l~~N  103 (198)
T d1m9la_          99 WISYN  103 (198)
T ss_dssp             ECSEE
T ss_pred             ccccc
Confidence            76655

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.11  E-value=2.1e-05  Score=49.38  Aligned_cols=64  Identities=20%  Similarity=0.207  Sum_probs=38.6

Q ss_pred             CCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcC-CCCCCCccEEEEecCc
Q 048450           23 LQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDY-LLQTTTLQELTIHRCP   89 (133)
Q Consensus        23 ~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~l~~L~~L~i~~c~   89 (133)
                      ..+++|++|+++++. ++.++.-. ..++.+++|+.|++++ +.++.+++. ......|+.+++.+++
T Consensus        62 ~~~~~L~~L~Ls~N~-i~~l~~~~-~~~~~l~~L~~L~Ls~-N~i~~l~~l~~l~~~~L~~L~L~~Np  126 (162)
T d1koha1          62 ENIPELLSLNLSNNR-LYRLDDMS-SIVQKAPNLKILNLSG-NELKSERELDKIKGLKLEELWLDGNS  126 (162)
T ss_dssp             HHCTTCCCCCCCSSC-CCCCSGGG-THHHHSTTCCCCCCTT-SCCCCGGGHHHHTTCCCSSCCCTTST
T ss_pred             HhCCCCCEeeCCCcc-ccCCchhH-HHHhhCCccccccccc-CccccchhhhhhhccccceeecCCCC
Confidence            356778888888754 55543200 0234577888888877 456666541 1123367778777765

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.62  E-value=0.00038  Score=48.95  Aligned_cols=81  Identities=23%  Similarity=0.309  Sum_probs=48.8

Q ss_pred             CCccEEeecCCCCCc-----cCCccCCCCCCccEEEeccCCCCcc-----ccccccccCCC-CCCccEEeecCCCCCCc-
Q 048450            2 PRLSSLTVGSCNKLK-----ALPDYLLQTTALQELSICSCDLLEE-----LPILEDRRTTD-IPRLTSLWISDCPNLKV-   69 (133)
Q Consensus         2 ~~L~~L~l~~~~~l~-----~lp~~~~~l~~L~~L~l~~c~~l~~-----lp~~~~~~~~~-l~~L~~L~l~~c~~l~~-   69 (133)
                      +++++|++++|. +.     .+...+...++|+.|+++++. ++.     +..    .+.. .++|++|++++|. ++. 
T Consensus        27 ~~l~~L~L~~~~-i~~~~~~~l~~~L~~~~~L~~LdLs~N~-i~~~~~~~l~~----~l~~~~~~L~~L~L~~n~-it~~   99 (460)
T d1z7xw1          27 QQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSNE-LGDVGVHCVLQ----GLQTPSCKIQKLSLQNCC-LTGA   99 (460)
T ss_dssp             TTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHHHHH----TTCSTTCCCCEEECTTSC-CBGG
T ss_pred             CCCCEEEeCCCC-CCHHHHHHHHHHHhcCCCCCEEECcCCc-CChHHHHHHHH----HHhcCCCCCCEEECCCCC-cccc
Confidence            467777777773 33     223334567778888887754 432     222    2322 3468888888765 432 


Q ss_pred             ----cCcCCCCCCCccEEEEecCc
Q 048450           70 ----LPDYLLQTTTLQELTIHRCP   89 (133)
Q Consensus        70 ----lp~~~~~l~~L~~L~i~~c~   89 (133)
                          ++..+...++|++|+++++.
T Consensus       100 ~~~~l~~~l~~~~~L~~L~L~~N~  123 (460)
T d1z7xw1         100 GCGVLSSTLRTLPTLQELHLSDNL  123 (460)
T ss_dssp             GHHHHHHHTTSCTTCCEEECCSSB
T ss_pred             ccccccchhhcccccccccccccc
Confidence                34455667788888887764

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.06  E-value=0.00014  Score=51.24  Aligned_cols=81  Identities=19%  Similarity=0.283  Sum_probs=56.2

Q ss_pred             CCccEEeecCCCCCccC--CccCCCCCCccEEEeccCCCCc-----cccccccccCCCCCCccEEeecCCCCCC-----c
Q 048450            2 PRLSSLTVGSCNKLKAL--PDYLLQTTALQELSICSCDLLE-----ELPILEDRRTTDIPRLTSLWISDCPNLK-----V   69 (133)
Q Consensus         2 ~~L~~L~l~~~~~l~~l--p~~~~~l~~L~~L~l~~c~~l~-----~lp~~~~~~~~~l~~L~~L~l~~c~~l~-----~   69 (133)
                      ++|++|+|++ ..+...  ...+..+++++.|++.+|. +.     .+..    .+...++|++|+++++. ++     .
T Consensus         2 ~~l~~ld~~~-~~i~~~~~~~l~~~l~~l~~L~L~~~~-i~~~~~~~l~~----~L~~~~~L~~LdLs~N~-i~~~~~~~   74 (460)
T d1z7xw1           2 LDIQSLDIQC-EELSDARWAELLPLLQQCQVVRLDDCG-LTEARCKDISS----ALRVNPALAELNLRSNE-LGDVGVHC   74 (460)
T ss_dssp             EEEEEEEEES-CCCCHHHHHHHHHHHTTCSEEEEESSC-CCHHHHHHHHH----HHHTCTTCCEEECTTCC-CHHHHHHH
T ss_pred             CCCCEEEeeC-CcCChHHHHHHHHhCCCCCEEEeCCCC-CCHHHHHHHHH----HHhcCCCCCEEECcCCc-CChHHHHH
Confidence            4689999977 566542  2334567889999999985 54     2333    45678999999998864 53     2


Q ss_pred             cCcCCC-CCCCccEEEEecCc
Q 048450           70 LPDYLL-QTTTLQELTIHRCP   89 (133)
Q Consensus        70 lp~~~~-~l~~L~~L~i~~c~   89 (133)
                      +...+. ...+|++|++++|.
T Consensus        75 l~~~l~~~~~~L~~L~L~~n~   95 (460)
T d1z7xw1          75 VLQGLQTPSCKIQKLSLQNCC   95 (460)
T ss_dssp             HHHTTCSTTCCCCEEECTTSC
T ss_pred             HHHHHhcCCCCCCEEECCCCC
Confidence            333433 23489999999986

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.36  E-value=0.0018  Score=40.37  Aligned_cols=81  Identities=15%  Similarity=0.203  Sum_probs=54.7

Q ss_pred             CCccEEeecCCCCCcc-----CCccCCCCCCccEEEeccCCCCcc-----ccccccccCCCCCCccEEeecCCCCCCc--
Q 048450            2 PRLSSLTVGSCNKLKA-----LPDYLLQTTALQELSICSCDLLEE-----LPILEDRRTTDIPRLTSLWISDCPNLKV--   69 (133)
Q Consensus         2 ~~L~~L~l~~~~~l~~-----lp~~~~~l~~L~~L~l~~c~~l~~-----lp~~~~~~~~~l~~L~~L~l~~c~~l~~--   69 (133)
                      ++|++|+|+++..+..     +-..+...++|+.|++++|. ++.     +..    .+...++|++|++++|. ++.  
T Consensus        15 ~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~-l~~~~~~~la~----~L~~n~~L~~L~L~~n~-i~~~g   88 (167)
T d1pgva_          15 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTA-ISDSEARGLIE----LIETSPSLRVLNVESNF-LTPEL   88 (167)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSC-CBHHHHTTHHH----HHHHCSSCCEEECCSSB-CCHHH
T ss_pred             CCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccc-cchhHHHHHhh----hhhhcccccceeeehhh-cchHH
Confidence            6799999987655532     22345567889999999875 432     222    33346789999999875 433  


Q ss_pred             ---cCcCCCCCCCccEEEEecC
Q 048450           70 ---LPDYLLQTTTLQELTIHRC   88 (133)
Q Consensus        70 ---lp~~~~~l~~L~~L~i~~c   88 (133)
                         +-..+..-++|++|+++++
T Consensus        89 ~~~l~~aL~~n~sL~~L~l~~n  110 (167)
T d1pgva_          89 LARLLRSTLVTQSIVEFKADNQ  110 (167)
T ss_dssp             HHHHHHHTTTTCCCSEEECCCC
T ss_pred             HHHHHHHHHhCCcCCEEECCCC
Confidence               3334566678999999865

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.24  E-value=0.0014  Score=40.57  Aligned_cols=35  Identities=29%  Similarity=0.344  Sum_probs=15.7

Q ss_pred             CCCccEEeecCCCCCCccC---cCCCCCCCccEEEEecC
Q 048450           53 IPRLTSLWISDCPNLKVLP---DYLLQTTTLQELTIHRC   88 (133)
Q Consensus        53 l~~L~~L~l~~c~~l~~lp---~~~~~l~~L~~L~i~~c   88 (133)
                      +++|++|+++++ .++.++   ..+..+++|+.|+++++
T Consensus        64 ~~~L~~L~Ls~N-~i~~l~~~~~~~~~l~~L~~L~Ls~N  101 (162)
T d1koha1          64 IPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGN  101 (162)
T ss_dssp             CTTCCCCCCCSS-CCCCCSGGGTHHHHSTTCCCCCCTTS
T ss_pred             CCCCCEeeCCCc-cccCCchhHHHHhhCCcccccccccC
Confidence            455555555552 233332   12233455555555544

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=92.68  E-value=0.011  Score=40.35  Aligned_cols=16  Identities=31%  Similarity=0.563  Sum_probs=8.1

Q ss_pred             CCCCCCccEEeecCCC
Q 048450           50 TTDIPRLTSLWISDCP   65 (133)
Q Consensus        50 ~~~l~~L~~L~l~~c~   65 (133)
                      +...++|++|++++|.
T Consensus       239 l~~~~~L~~L~Ls~n~  254 (344)
T d2ca6a1         239 LKSWPNLRELGLNDCL  254 (344)
T ss_dssp             GGGCTTCCEEECTTCC
T ss_pred             ccccccchhhhhhcCc
Confidence            3344555555555543

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=92.03  E-value=0.021  Score=38.93  Aligned_cols=81  Identities=20%  Similarity=0.254  Sum_probs=51.2

Q ss_pred             CCccEEeecCCCCCc-----cCCccCCCCCCccEEEeccCCCCcc------ccccccccCCCCCCccEEeecCCCCCC--
Q 048450            2 PRLSSLTVGSCNKLK-----ALPDYLLQTTALQELSICSCDLLEE------LPILEDRRTTDIPRLTSLWISDCPNLK--   68 (133)
Q Consensus         2 ~~L~~L~l~~~~~l~-----~lp~~~~~l~~L~~L~l~~c~~l~~------lp~~~~~~~~~l~~L~~L~l~~c~~l~--   68 (133)
                      +.|+.+.++++ .+.     .+...+...++|+.|++.+|. +..      +..    .+...++|+.|+++++. ++  
T Consensus       158 ~~L~~l~l~~n-~i~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~g~~~~l~~----~l~~~~~L~~L~Ls~N~-i~~~  230 (344)
T d2ca6a1         158 PPLRSIICGRN-RLENGSMKEWAKTFQSHRLLHTVKMVQNG-IRPEGIEHLLLE----GLAYCQELKVLDLQDNT-FTHL  230 (344)
T ss_dssp             CCCCEEECCSS-CCTGGGHHHHHHHHHHCTTCCEEECCSSC-CCHHHHHHHHHT----TGGGCTTCCEEECCSSC-CHHH
T ss_pred             cccceeecccc-cccccccccccchhhhhhhhccccccccc-ccccccccchhh----hhcchhhhccccccccc-cccc
Confidence            45777877764 332     223334556788889888864 432      222    45567888899988764 32  


Q ss_pred             ---ccCcCCCCCCCccEEEEecCc
Q 048450           69 ---VLPDYLLQTTTLQELTIHRCP   89 (133)
Q Consensus        69 ---~lp~~~~~l~~L~~L~i~~c~   89 (133)
                         .+...+...++|++|++++|.
T Consensus       231 g~~~L~~~l~~~~~L~~L~Ls~n~  254 (344)
T d2ca6a1         231 GSSALAIALKSWPNLRELGLNDCL  254 (344)
T ss_dssp             HHHHHHHHGGGCTTCCEEECTTCC
T ss_pred             ccccccccccccccchhhhhhcCc
Confidence               233445566788888888875

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=92.03  E-value=0.0068  Score=37.34  Aligned_cols=82  Identities=21%  Similarity=0.182  Sum_probs=50.0

Q ss_pred             CCccEEeecCCCCCcc-----CCccCCCCCCccEEEeccCCCCcc-----ccccccccCCCCCCccEEeecCCCCC----
Q 048450            2 PRLSSLTVGSCNKLKA-----LPDYLLQTTALQELSICSCDLLEE-----LPILEDRRTTDIPRLTSLWISDCPNL----   67 (133)
Q Consensus         2 ~~L~~L~l~~~~~l~~-----lp~~~~~l~~L~~L~l~~c~~l~~-----lp~~~~~~~~~l~~L~~L~l~~c~~l----   67 (133)
                      |+|++|+++++..+..     +-..+...++|+.|++++|. ++.     +..    .+...++++.+++.+|..-    
T Consensus        17 ~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~-l~~~~~~~L~~----~l~~~~~l~~l~l~~~~~~~~g~   91 (166)
T d1io0a_          17 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAE----MLKVNNTLKSLNVESNFISGSGI   91 (166)
T ss_dssp             TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHH----HHHHCSSCCEEECCSSCCCHHHH
T ss_pred             CCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCc-ccHHHHHHHHH----HHhhcccchhhhhccccccchhH
Confidence            6788888887655532     22344567889999998874 422     222    3344677888888776532    


Q ss_pred             CccCcCCCCCCCccEEEEecC
Q 048450           68 KVLPDYLLQTTTLQELTIHRC   88 (133)
Q Consensus        68 ~~lp~~~~~l~~L~~L~i~~c   88 (133)
                      ..+-..+...++|+.+++..+
T Consensus        92 ~~l~~~l~~~~~L~~l~L~l~  112 (166)
T d1io0a_          92 LALVEALQSNTSLIELRIDNQ  112 (166)
T ss_dssp             HHHHHGGGGCSSCCEEECCCC
T ss_pred             HHHHHHHHhCccccEEeeccC
Confidence            123344455667887777543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=85.89  E-value=0.11  Score=31.66  Aligned_cols=61  Identities=13%  Similarity=0.207  Sum_probs=42.1

Q ss_pred             CCCCccEEEeccCCCCcc-----ccccccccCCCCCCccEEeecCCCCCCc-----cCcCCCCCCCccEEEEecCc
Q 048450           24 QTTALQELSICSCDLLEE-----LPILEDRRTTDIPRLTSLWISDCPNLKV-----LPDYLLQTTTLQELTIHRCP   89 (133)
Q Consensus        24 ~l~~L~~L~l~~c~~l~~-----lp~~~~~~~~~l~~L~~L~l~~c~~l~~-----lp~~~~~l~~L~~L~i~~c~   89 (133)
                      +-++|+.|+++++..++.     +-.    .+...++|++|++++|. ++.     +...+...+.|++|++++|.
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~----~L~~n~~L~~L~Ls~n~-l~~~~~~~la~~L~~n~~L~~L~L~~n~   83 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIE----AACNSKHIEKFSLANTA-ISDSEARGLIELIETSPSLRVLNVESNF   83 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHH----HHTTCSCCCEEECTTSC-CBHHHHTTHHHHHHHCSSCCEEECCSSB
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHH----HHhhCCccceeeccccc-cchhHHHHHhhhhhhcccccceeeehhh
Confidence            457899999988654532     222    45567889999999875 432     22233445789999999985