Citrus Sinensis ID: 048462

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-----
Protein Sequence
MHALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPLDLRMDHLETLEIDRCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDLKWIRYAPNLQFLYVSYCPRLSEIIGTYESPGTSEIEESQDFFSNLMVIDLRHLPSLTSICCGVVPFPSLQTISVNGCPSLRKLPLNSGSAKNSLNAIRGSREWWDRLEWEDEDTRNVFASKFLEL
Secondary Structure (PSIPRED)
cccccEEEcccccccccccHHHHcccccccccccccccccccHHHHccccccEEcccccccccccccccccccccccEEEccccccccccccccccccccccccccccEEEEEEEcccHHHHHHcccHHHHccccEEEEEccccccccccccccccEEEcccccccccccccccccccccccccccEEEEEEccccccccccccccccccEEEEEcccccEEEcccccccccccccccccccccccEEccccccccccccccccccccccEEEEEcccccccccccccccccccEEEEccHHHHccccccccccccccccccEEc
Secondary Structure Prediction (SSPRO)
cccEEEEEccccccHHHccHHHHHHHHHHHEccccccHHHccHHHHHHHHHHHEEccccccHccccHHHHHcHHHcEEEEEcccccccccccccHHHHHHHHHHHHHcEEEEEcccHHHHHHHHccHHHHHHHHHHcHHccccccHHHHHHcccccEEEEEcccccccccccccccccccccccccEEEEEEcccccccccHHHHcccccEEEEccHHHHHHHHccccccccccccccccccHHHHEEEEcccHHHHHHccccccccccEEEEEcccccHcccccccccccccEEEEEccHHHHHHcccccHHHHHHcccccccc
Coil and Loop (DISEMBL)
MHALAVldlsynldlvkLPEAIGKLINLCYLnlsntrigqlptgiTYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVdavnrvksspklQSCIKRLAVVLMASFLLPLDLRMDHLETLEIdrcsleskndyfgdqgrtrtycfrnlrhlsvktcpcmtdlkwiryapnlqFLYVSYCprlseiigtyespgtseieeSQDFFSNLMVIdlrhlpsltsiccgvvpfpslqtisvngcpslrklplnsgsaknsLNAIRGSrewwdrlewededtrNVFASKFLEL
Flexible Loop (DISEMBL)
MHALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPLDLRMDHLETLeidrcsleskndyfgdqgRTRTYcfrnlrhlsvktCPCMTDLKWIRYAPNLQFLYVSYCPRLSEIIGTYESPGTSEIEESQDFFSNLMVIDLRHLPSLTSICCGVVPFPSLQTISVNGCPSLRKlplnsgsaknslnairgsrewwdrlewededtrnvfaskflel
Low Complexity Region (SEG)
MHALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPLDLRMDHLETLEIDRCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDLKWIRYAPNLQFLYVSYCPRLSEIIGTYESPGTSEIEESQDFFSNLMVIDLRHLPSLTSICCGVVPFPSLQTISVNGCPSLRKLPLNSGSAKNSLNAIRGSrewwdrlewededtrNVFASKFLEL
Disordered region (IsUnstruct)
***LAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPLDLRMDHLETLEIDRCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDLKWIRYAPNLQFLYVSYCPRLSEIIGTYES********SQDFFSNLMVIDLRHLPSLTSICCGVVPFPSLQTISVNGCPSLRKL***********NAIRGSREWWDRLEWEDEDTRNVF*******
Disordered Region (DISOPRED)
MHALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWFSTELVEL**********ELESLENIHDISVTLC**************QSCIKRLAVVLMASFLLPLDLRMDHLETLEIDRCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDLKWIRYAPNLQFLYVSYCPRLSEIIGTYE************FFSNLMVIDLRHLPSLTSICCGVVPFPSLQTISVNGCPSLRKLPL***********IRGSREWWDRLEWEDEDTRNVFASKFLEL
Disordered Region (DISEMBL)
MHALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPLDLRMDHLETLEIDRCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDLKWIRYAPNLQFLYVSYCPRLSEIIGTYESPGTSEIEESQDFFSNLMVIDLRHLPSLTSICCGVVPFPSLQTISVNGCPSLRKLPLNSGSAKNSLNAIRGSREWWDRLEWEDEDTRNVFASKFLEL
Disordered Region (DISPRO)
*HALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPLDLRMDHLETLEIDRCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDLKWIRYAPNLQFLYVSYCPRLSEIIGTYESPGTSEIEESQDFFSNLMVIDLRHLPSLTSICCGVVPFPSLQTISVNGCPSLRKLPLNSGSAKNSLNAIRGSREWWDRLEWEDEDTRNVFASKFL**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MHALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPLDLRMDHLETLEIDRCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDLKWIRYAPNLQFLYVSYCPRLSEIIGTYESPGTSEIEESQDFFSNLMVIDLRHLPSLTSICCGVVPFPSLQTISVNGCPSLRKLPLNSGSAKNSLNAIRGSREWWDRLEWEDEDTRNVFASKFLEL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	325	2.2.26 [Sep-21-2011]
O64789	925	Probable disease resistan	yes	no	0.895	0.314	0.380	4e-33
O22727	967	Probable disease resistan	no	no	0.913	0.307	0.359	2e-29
O64973	889	Disease resistance protei	no	no	0.932	0.340	0.331	2e-29
O64790	762	Probable disease resistan	no	no	0.913	0.389	0.346	4e-29
Q9C8T9	898	Putative disease resistan	no	no	0.923	0.334	0.331	7e-29
Q8RXS5	888	Probable disease resistan	no	no	0.935	0.342	0.342	1e-28
O82484	892	Putative disease resistan	no	no	0.956	0.348	0.319	2e-27
Q9LVT3	948	Probable disease resistan	no	no	0.950	0.325	0.331	2e-27
Q940K0	889	Probable disease resistan	no	no	0.901	0.329	0.345	5e-27
Q9SH22	884	Probable disease resistan	no	no	0.916	0.337	0.323	2e-25

>sp|O64789|DRL18_ARATH Probable disease resistance protein At1g61310 OS=Arabidopsis thaliana GN=At1g61310 PE=2 SV=1

 Score =  142 bits (358), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 128/336 (38%), Positives = 167/336 (49%), Gaps = 45/336 (13%)

Query: 1   MHALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMR 60
           M  L VLDLS N D  +LPE I  L++L YL+LS TRI QLP G+  LK L  L L    
Sbjct: 569 MQKLVVLDLSDNRDFNELPEQISGLVSLQYLDLSFTRIEQLPVGLKELKKLTFLDL---A 625

Query: 61  YLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAV 120
           Y A + C  IS +S L      S    ++H     SVL EL+ LEN+ D+++TL      
Sbjct: 626 YTARL-CS-ISGISRLLSLRVLSLLGSKVH--GDASVLKELQQLENLQDLAITL------ 675

Query: 121 NRVKSSPKLQSCIKRLAVVL----MASFLL-PLDLRMDHLETLEIDRCSLESKNDYFGD- 174
                S +L S  +RLA V+    +  FL  P DL    L ++E +  SL  KN YF + 
Sbjct: 676 -----SAELISLDQRLAKVISILGIEGFLQKPFDLSF--LASME-NLSSLWVKNSYFSEI 727

Query: 175 ---QGRT---------RTYCFRNLRHLSVKTCPCMTDLKWIRYAPNLQFLYVSYCPRLSE 222
              +  T         +  CF NL  L +  C  M DL WI +APNL  L++     + E
Sbjct: 728 KCRESETDSSYLHINPKIPCFTNLSRLDIVKCHSMKDLTWILFAPNLVVLFIEDSREVGE 787

Query: 223 IIGTYESPGTSEIEESQDFFSNLMVIDLRHLPSLTSICCGVVPFPSLQTISVNGCPSLRK 282
           II   ++   + I      F  L  + L +LP L SI    +PFP L  I V  CP LRK
Sbjct: 788 IINKEKATNLTSITP----FLKLERLILCYLPKLESIYWSPLPFPLLLNIDVEECPKLRK 843

Query: 283 LPLNSGSAKNSLNAIRGSREWWDRLEWEDEDTRNVF 318
           LPLN+ SA   +   R    +   LEWEDEDT+N F
Sbjct: 844 LPLNATSAPK-VEEFR-ILMYPPELEWEDEDTKNRF 877

Probable disease resistance protein.
Arabidopsis thaliana (taxid: 3702)

>sp|O22727|DRL16_ARATH Probable disease resistance protein At1g61190 OS=Arabidopsis thaliana GN=At1g61190 PE=3 SV=1

 Score =  130 bits (326), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 121/337 (35%), Positives = 155/337 (45%), Gaps = 40/337 (11%)

Query: 1   MHALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMR 60
           M  L VLDLS+N D  +LPE I  L++L YL+LS TRI QLP G+  LK L  L L    
Sbjct: 560 MQKLVVLDLSHNPDFNELPEQISGLVSLQYLDLSWTRIEQLPVGLKELKKLIFLNLCFTE 619

Query: 61  YLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAV 120
            L       IS +S L    W S     +H     SVL EL+ LEN+ D+          
Sbjct: 620 RLC-----SISGISRLLSLRWLSLRESNVH--GDASVLKELQQLENLQDL---------- 662

Query: 121 NRVKSSPKLQSCIKRLA----VVLMASFLL-PLDL----RMDHLETLEIDRCSLESKNDY 171
            R+  S +L S  +RLA    V+ +  FL  P DL     M++L  L ++       N  
Sbjct: 663 -RITESAELISLDQRLAKLISVLRIEGFLQKPFDLSFLASMENLYGLLVENSYFSEINIK 721

Query: 172 FGDQGRTRTY--------CFRNLRHLSVKTCPCMTDLKWIRYAPNLQFLYVSYCPRLSEI 223
             +     +Y        CF NL  L +  C  M DL WI +APNL  L +     + EI
Sbjct: 722 CRESETESSYLHINPKIPCFTNLTGLIIMKCHSMKDLTWILFAPNLVNLDIRDSREVGEI 781

Query: 224 IGTYESPGTSEIEESQDFFSNLMVIDLRHLPSLTSICCGVVPFPSLQTISVNGCPSLRKL 283
           I   ++   + I      F  L  + L  LP L SI    +PFP L  I V  CP LRKL
Sbjct: 782 INKEKAINLTSIITP---FQKLERLFLYGLPKLESIYWSPLPFPLLSNIVVKYCPKLRKL 838

Query: 284 PLNSGSAK--NSLNAIRGSREWWDRLEWEDEDTRNVF 318
           PLN+ S              E  + LEWEDEDT+N F
Sbjct: 839 PLNATSVPLVEEFEIRMDPPEQENELEWEDEDTKNRF 875

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|O64973|RPS5_ARATH Disease resistance protein RPS5 OS=Arabidopsis thaliana GN=RPS5 PE=1 SV=2

 Score =  130 bits (326), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 110/332 (33%), Positives = 155/332 (46%), Gaps = 29/332 (8%)

Query: 1   MHALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMR 60
           M  L VLDLS N  L +LPE I +L +L Y NLS T I QLP G+  LK L  L L+ M 
Sbjct: 562 MPHLVVLDLSENQSLNELPEEISELASLRYFNLSYTCIHQLPVGLWTLKKLIHLNLEHMS 621

Query: 61  YLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAV 120
            L  +    IS+L +L+      + L+        S++ EL+ LE++  I++ + +    
Sbjct: 622 SLGSILG--ISNLWNLRTLGLRDSRLLL-----DMSLVKELQLLEHLEVITLDISSSLVA 674

Query: 121 NRVKSSPKLQSCIKRLAVVLMAS-----FLLPLDLRMDHLETLEIDRCSLESKNDYFGDQ 175
             +  S +L  CIK +    +         LP    M +L  L I RC +          
Sbjct: 675 EPLLCSQRLVECIKEVDFKYLKEESVRVLTLPT---MGNLRKLGIKRCGMREIKIERTTS 731

Query: 176 GRTR-----TYCFRNLRHLSVKTCPCMTDLKWIRYAPNLQFLYVSYCPRLSEIIGTYESP 230
             +R     T CF NL  + +  C  + DL W+ +APNL FL V +   + +II   ++ 
Sbjct: 732 SSSRNKSPTTPCFSNLSRVFIAKCHGLKDLTWLLFAPNLTFLEVGFSKEVEDIISEEKAE 791

Query: 231 GTSEIEESQDF--FSNLMVIDLRHLPSLTSICCGVVPFPSLQTISVNGCPSLRKLPLN-- 286
                E S     F  L  + L  L  L  I    + FP L+ I V  C  LRKLPL+  
Sbjct: 792 -----EHSATIVPFRKLETLHLFELRGLKRIYAKALHFPCLKVIHVEKCEKLRKLPLDSK 846

Query: 287 SGSAKNSLNAIRGSREWWDRLEWEDEDTRNVF 318
           SG A   L    G REW +R+EWED+ T+  F
Sbjct: 847 SGIAGEELVIYYGEREWIERVEWEDQATQLRF 878

Disease resistance (R) protein that specifically recognizes the avrPphB type III effector avirulence protein from Pseudomonas syringae. Also confers resistance against Hyaloperonospora parasitica (downy mildew). Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Requires PBS1 to trigger the defense reaction against avrPphB. Probably triggers the defense mechanism when PBS1 is cleaved by avrPphB, suggesting that it detects indirectly the protease activity of avrPphB, and possibly binds to the cleaved RPS5.

Arabidopsis thaliana (taxid: 3702)

>sp|O64790|DRL17_ARATH Probable disease resistance protein At1g61300 OS=Arabidopsis thaliana GN=At1g61300 PE=2 SV=2

 Score =  128 bits (322), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 116/335 (34%), Positives = 158/335 (47%), Gaps = 38/335 (11%)

Query: 1   MHALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMR 60
           M  L VLDLSYN D  KLPE I  L++L +L+LSNT I QLP G+  LK L  L L    
Sbjct: 445 MQKLVVLDLSYNRDFNKLPEQISGLVSLQFLDLSNTSIKQLPVGLKKLKKLTFLNLAYTV 504

Query: 61  YLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAV 120
            L    C  IS +S L           ++H     SVL EL+ L+N+  +++TL    ++
Sbjct: 505 RL----CS-ISGISRLLSLRLLRLLGSKVH--GDASVLKELQKLQNLQHLAITLSAELSL 557

Query: 121 NRVKSSPKLQSCIKRLAVVLMASFLL-PLDLRMDHLETLEIDRCSLESKNDYFGD----- 174
           N        Q     ++++ +  FL  P DL    L ++E +  SL  KN YF +     
Sbjct: 558 N--------QRLANLISILGIEGFLQKPFDLSF--LASME-NLSSLWVKNSYFSEIKCRE 606

Query: 175 --------QGRTRTYCFRNLRHLSVKTCPCMTDLKWIRYAPNLQFLYVSYCPRLSEIIGT 226
                   +   +  CF NL  L +  C  + DL WI +APNL +LY+     + EII  
Sbjct: 607 SETASSYLRINPKIPCFTNLSRLGLSKCHSIKDLTWILFAPNLVYLYIEDSREVGEIINK 666

Query: 227 YESPGTSEIEESQDFFSNLMVIDLRHLPSLTSICCGVVPFPSLQTISVNGCPSLRKLPLN 286
            ++   + I      F  L  + L +LP L SI    + FP L  I V  CP LRKLPLN
Sbjct: 667 EKATNLTSITP----FLKLERLILYNLPKLESIYWSPLHFPRLLIIHVLDCPKLRKLPLN 722

Query: 287 SGSAK--NSLNAIRGSREWWDRLEWEDEDTRNVFA 319
           + S                 + LEWEDEDT+N F 
Sbjct: 723 ATSVPLVEEFQIRMYPPGLGNELEWEDEDTKNRFV 757

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C8T9|DRL19_ARATH Putative disease resistance protein At1g63350 OS=Arabidopsis thaliana GN=At1g63350 PE=2 SV=1

 Score =  128 bits (321), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 109/329 (33%), Positives = 168/329 (51%), Gaps = 29/329 (8%)

Query: 1   MHALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMR 60
           M  LAVLDLS N  L +LP  I +L++L YLNLS+T I  LP G+  LK L  L L+   
Sbjct: 560 MPKLAVLDLSGNYYLSELPNGISELVSLQYLNLSSTGIRHLPKGLQELKKLIHLYLERTS 619

Query: 61  YLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLAELESLENIHDISVTL--CNVD 118
            L  +    IS L +L+V      +L    Y      + ELE+LE++  ++ T+  C + 
Sbjct: 620 QLGSMVG--ISCLHNLKVL-----KLSGSSYAWDLDTVKELEALEHLEVLTTTIDDCTL- 671

Query: 119 AVNRVKSSPKLQSCIKRLA-----VVLMASFLLPLDLRMDHLETLEIDRCSLESKNDYFG 173
             ++  SS +L SCI+ L           S  + L + MD L+   I+ C       +  
Sbjct: 672 GTDQFLSSHRLMSCIRFLKISNNSNRNRNSSRISLPVTMDRLQEFTIEHC-------HTS 724

Query: 174 DQGRTRTYCFRNLRHLSVKTCPCMTDLKWIRYAPNLQFLYVSYCPRLSEIIGTYESPGTS 233
           +    R   F +L  +++  C  + +L ++ +APNL+ L+V    +L +II   ++    
Sbjct: 725 EIKMGRICSFSSLIEVNLSNCRRLRELTFLMFAPNLKRLHVVSSNQLEDIINKEKA---H 781

Query: 234 EIEESQDF-FSNLMVIDLRHLPSLTSICCGVVPFPSLQTISVNGCPSLRKLPLNSGSAKN 292
           + E+S    F  L  + L +L  L +I    +PFP L+ I+V GCP+L+KLPL+S S K+
Sbjct: 782 DGEKSGIVPFPKLNELHLYNLRELKNIYWSPLPFPCLEKINVMGCPNLKKLPLDSKSGKH 841

Query: 293 SLNAI---RGSREWWDRLEWEDEDTRNVF 318
             N +       EW  R+EWEDE T+  F
Sbjct: 842 GGNGLIITHREMEWITRVEWEDEATKTRF 870

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8RXS5|DRL40_ARATH Probable disease resistance protein At5g63020 OS=Arabidopsis thaliana GN=At5g63020 PE=2 SV=2

 Score =  127 bits (319), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 112/327 (34%), Positives = 160/327 (48%), Gaps = 23/327 (7%)

Query: 1   MHALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMR 60
           M  L VLDLS N DL  LP  I + ++L YL+LS TRI   P G+  L+ L  L L+  R
Sbjct: 556 MPMLVVLDLSMNRDLRHLPNEISECVSLQYLSLSRTRIRIWPAGLVELRKLLYLNLEYTR 615

Query: 61  YLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAV 120
            +  + C  IS L+SL+V   F +      + +   VL EL+ LEN+  +++TL     +
Sbjct: 616 MVESI-CG-ISGLTSLKVLRLFVS-----GFPEDPCVLNELQLLENLQTLTITLGLASIL 668

Query: 121 NRVKSSPKLQSCIKRLAV------VLMASFLLPLD-LRMDHLETLEIDRCSLESKNDYFG 173
            +  S+ +L SC + L +        + SF+  +D L+  H    +I    ++       
Sbjct: 669 EQFLSNQRLASCTRALRIENLNPQSSVISFVATMDSLQELHFADSDIWEIKVKRNETVLP 728

Query: 174 DQGRTRTYCFRNLRHLSVKTCPCMTDLKWIRYAPNLQFLYVSYCPRLSEIIGTYESPGTS 233
               T T  F NL  +S++ C  + DL W+ +APNL  L V     L E+I         
Sbjct: 729 LHIPTTTTFFPNLSQVSLEFCTRLRDLTWLIFAPNLTVLRVISASDLKEVI-------NK 781

Query: 234 EIEESQDF--FSNLMVIDLRHLPSLTSICCGVVPFPSLQTISVNGCPSLRKLPLNSGSAK 291
           E  E Q+   F  L  + L ++  L  I  G +PFP LQ I VNGC  LRKLPLN  S  
Sbjct: 782 EKAEQQNLIPFQELKELRLENVQMLKHIHRGPLPFPCLQKILVNGCSELRKLPLNFTSVP 841

Query: 292 NSLNAIRGSREWWDRLEWEDEDTRNVF 318
                I   ++W + LEWEDE T+  F
Sbjct: 842 RGDLVIEAHKKWIEILEWEDEATKARF 868

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|O82484|DRL23_ARATH Putative disease resistance protein At4g10780 OS=Arabidopsis thaliana GN=At4g10780 PE=2 SV=1

 Score =  123 bits (309), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 105/329 (31%), Positives = 165/329 (50%), Gaps = 18/329 (5%)

Query: 1   MHALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMR 60
           M  L VLDLS N  L  LPE I +L+ L YL+LS+T I  LP  +  LK L  L L+ MR
Sbjct: 560 MRKLVVLDLSENHQLDGLPEQISELVALRYLDLSHTNIEGLPACLQDLKTLIHLNLECMR 619

Query: 61  YLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAV 120
            L  +    IS LSSL+     ++ ++    +D  SV  EL  LE++  +++ + +   +
Sbjct: 620 RLGSIAG--ISKLSSLRTLGLRNSNIM----LDVMSV-KELHLLEHLEILTIDIVSTMVL 672

Query: 121 NRVKSSPKLQSCIKRLAV-VLMASFLLPLDLR---MDHLETLEIDRCSL-ESKNDYFGDQ 175
            ++  +  L +C++ +++  L+        LR   MD L +L +  C + E + +     
Sbjct: 673 EQMIDAGTLMNCMQEVSIRCLIYDQEQDTKLRLPTMDSLRSLTMWNCEISEIEIERLTWN 732

Query: 176 GRTRTYCFRNLRHLSVKTCPCMTDLKWIRYAPNLQFLYVSYCPRLSEIIGTYESPGTSEI 235
               + CF NL  + +  C  + DL W+ +APN+ +L +    +L E+I   ++ G +E 
Sbjct: 733 TNPTSPCFFNLSQVIIHVCSSLKDLTWLLFAPNITYLMIEQLEQLQELISHAKATGVTEE 792

Query: 236 EESQDF----FSNLMVIDLRHLPSLTSICCGVVPFPSLQTISVNGCPSLRKLPLNS--GS 289
           E+ Q      F  L ++ L  LP L SI    + FP L  I V  CP LRKLPL+S  G+
Sbjct: 793 EQQQLHKIIPFQKLQILHLSSLPELKSIYWISLSFPCLSGIYVERCPKLRKLPLDSKTGT 852

Query: 290 AKNSLNAIRGSREWWDRLEWEDEDTRNVF 318
                       EW + +EW+DE T+  F
Sbjct: 853 VGKKFVLQYKETEWIESVEWKDEATKLHF 881

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LVT3|DRL38_ARATH Probable disease resistance protein At5g47260 OS=Arabidopsis thaliana GN=At5g47260 PE=3 SV=2

 Score =  123 bits (309), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 107/323 (33%), Positives = 167/323 (51%), Gaps = 14/323 (4%)

Query: 1   MHALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMR 60
           M  L VLDLS+N +L +LPE +  L+ L +LNLS T I  LP G+  LK+L  L LD   
Sbjct: 543 MTGLVVLDLSFNRELAELPEEVSSLVLLRFLNLSWTCIKGLPLGLKELKSLIHLDLDYTS 602

Query: 61  YLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAV 120
            L  V   VI+SL +LQV   F +  ++L       ++ +++ L+++ ++S+T+     +
Sbjct: 603 NLQEV--DVIASLLNLQVLRLFHSVSMDL------KLMEDIQLLKSLKELSLTVRGSSVL 654

Query: 121 NRVKSSPKLQSCIKRL---AVVLMASFLLPLDLRMDHLETLEIDRCS-LESKNDYFGDQG 176
            R+ S  +L S I+RL      ++   +L L+      E L+I  C+ LE   D+     
Sbjct: 655 QRLLSIQRLASSIRRLHLTETTIVDGGILSLNAIFSLCE-LDILGCNILEITIDWRCTIQ 713

Query: 177 RTRTYCFRNLRHLSVKTCPCMTDLKWIRYAPNLQFLYVSYCPRLSEIIGTYESPGTSEIE 236
           R     F+N+R +++  C  + DL W+  AP L  L VS CP++ E+I + +        
Sbjct: 714 REIIPQFQNIRTMTIHRCEYLRDLTWLLLAPCLGELSVSECPQMEEVI-SKDKAMAKLGN 772

Query: 237 ESQDFFSNLMVIDLRHLPSLTSICCGVVPFPSLQTISVNGCPSLRKLPLNSGSAKNSLNA 296
            S+  F NL  + L  LP L SI    +PFP L+ + +  CP LR+LP NS S   +   
Sbjct: 773 TSEQPFQNLTKLVLDGLPKLESIYWTPLPFPVLEYLVIRRCPELRRLPFNSESTIGNQVE 832

Query: 297 IRGSREWWDRLEWEDEDTRNVFA 319
                +    +EWEDE T+  F+
Sbjct: 833 TIIEEQVIKIVEWEDEATKQRFS 855

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q940K0|DRL15_ARATH Probable disease resistance protein At1g61180 OS=Arabidopsis thaliana GN=At1g61180 PE=2 SV=2

 Score =  122 bits (305), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 117/339 (34%), Positives = 163/339 (48%), Gaps = 46/339 (13%)

Query: 1   MHALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMR 60
           M  L VLDLSYN D  KLPE I  L++L +L+LSNT I  +P G+  LK L  L L    
Sbjct: 556 MQKLVVLDLSYNRDFNKLPEQISGLVSLQFLDLSNTSIEHMPIGLKELKKLTFLDLTYTD 615

Query: 61  YLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAV 120
            L       IS +S L           ++H     SVL EL+ L+N+ ++++T+      
Sbjct: 616 RLC-----SISGISRLLSLRLLRLLGSKVH--GDASVLKELQQLQNLQELAITV------ 662

Query: 121 NRVKSSPKLQSCIKRLAVVL----MASFLL-PLDLRMDHLETLEIDRCSLESKNDYFGD- 174
                S +L S  +RLA ++    +  FL  P DL    L ++E +  SL  +N YF + 
Sbjct: 663 -----SAELISLDQRLAKLISNLCIEGFLQKPFDLSF--LASME-NLSSLRVENSYFSEI 714

Query: 175 ---QGRTRTY---------CFRNLRHLSVKTCPCMTDLKWIRYAPNLQFLYVSYCPRLSE 222
              +  T +          CF NL  L +  C  M DL WI +APNL  L +     + E
Sbjct: 715 KCRESETESSYLRINPKIPCFTNLSRLEIMKCHSMKDLTWILFAPNLVVLLIEDSREVGE 774

Query: 223 IIGTYESPGTSEIEESQDFFSNLMVIDLRHLPSLTSICCGVVPFPSLQTISVNGCPSLRK 282
           II   ++   + I      F  L  + L +LP L SI    +PFP L T+ V+ CP LRK
Sbjct: 775 IINKEKATNLTSITP----FLKLEWLILYNLPKLESIYWSPLPFPVLLTMDVSNCPKLRK 830

Query: 283 LPLNSGSAKNSLN---AIRGSREWWDRLEWEDEDTRNVF 318
           LPLN+ S          +    E  + LEWED+DT+N F
Sbjct: 831 LPLNATSVSKVEEFEIHMYPPPEQENELEWEDDDTKNRF 869

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SH22|DRL20_ARATH Probable disease resistance protein At1g63360 OS=Arabidopsis thaliana GN=At1g63360 PE=2 SV=1

 Score =  116 bits (290), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 106/328 (32%), Positives = 161/328 (49%), Gaps = 30/328 (9%)

Query: 1   MHALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMR 60
           M  LAVLDLS+N  L +LPE I  L++L YLNL  T I  LP GI  LK +  L L+  R
Sbjct: 567 MPKLAVLDLSHNKSLFELPEEISNLVSLKYLNLLYTEISHLPKGIQELKKIIHLNLEYTR 626

Query: 61  YLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAV 120
            L  +    ISSL +L+V   F + L         + + ELE+LE++  ++ T+      
Sbjct: 627 KLESITG--ISSLHNLKVLKLFRSRLPW-----DLNTVKELETLEHLEILTTTI--DPRA 677

Query: 121 NRVKSSPKLQSCIKRL-----AVVLMASFLLPLDLRMDHLETLEIDRCSLESKNDYFGDQ 175
            +  SS +L S  + L     +V  +   L  L +  D L   +I  CS+         +
Sbjct: 678 KQFLSSHRLLSHSRLLEIYGSSVSSLNRHLESLSVSTDKLREFQIKSCSI--------SE 729

Query: 176 GRTRTYC-FRNLRHLSVKTCPCMTDLKWIRYAPNLQFLYVSYCPRLSEIIGTYESPGTSE 234
            +    C F +L  +++  C  + +L ++ +AP ++ L V +   L +II   ++    E
Sbjct: 730 IKMGGICNFLSLVDVNIFNCEGLRELTFLIFAPKIRSLSVWHAKDLEDIINEEKA---CE 786

Query: 235 IEESQDF-FSNLMVIDLRHLPSLTSICCGVVPFPSLQTISVNGCPSLRKLPLNSGSAKNS 293
            EES    F  L  + L  LP L  I    +PF  L+ I++  CP+LRKLPL+S S K  
Sbjct: 787 GEESGILPFPELNFLTLHDLPKLKKIYWRPLPFLCLEEINIRECPNLRKLPLDSTSGKQG 846

Query: 294 LNA--IRGS-REWWDRLEWEDEDTRNVF 318
            N   IR     W++ ++W DE T+  F
Sbjct: 847 ENGCIIRNKDSRWFEGVKWADEATKKRF 874

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	325
255552975	1066	Disease resistance protein RPS5, putativ	0.975	0.297	0.410	9e-54
296082688	448	unnamed protein product [Vitis vinifera]	0.923	0.669	0.413	3e-48
359482621	878	PREDICTED: disease resistance protein RP	0.969	0.358	0.387	3e-48
225465083	920	PREDICTED: probable disease resistance p	0.923	0.326	0.413	5e-48
297743311	745	unnamed protein product [Vitis vinifera]	0.972	0.424	0.4	9e-48
359482617	1005	PREDICTED: disease resistance protein RP	0.972	0.314	0.4	1e-47
255574524	881	Disease resistance protein RFL1, putativ	0.953	0.351	0.403	3e-47
147856932	761	hypothetical protein VITISV_019820 [Viti	0.96	0.409	0.384	4e-47
359482633	927	PREDICTED: disease resistance protein RP	0.96	0.336	0.381	1e-46
147782477	1377	hypothetical protein VITISV_002420 [Viti	0.987	0.233	0.4	2e-46

>gi|255552975|ref|XP_002517530.1| Disease resistance protein RPS5, putative [Ricinus communis] gi|223543162|gb|EEF44694.1| Disease resistance protein RPS5, putative [Ricinus communis]

 Score =  216 bits (551), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 135/329 (41%), Positives = 195/329 (59%), Gaps = 12/329 (3%)

Query: 3   ALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYL 62
            L VLDLS N  L +LPE IGKLINL YLNLS T I ++ T I  L  L+ L LD  +YL
Sbjct: 564 GLKVLDLSSNHGLAELPEGIGKLINLHYLNLSWTAIKEMSTEIKKLTKLRCLVLDNTKYL 623

Query: 63  AFVPCQVISSLSSLQVFSWFST-ELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVN 121
             +  +VISSL SLQ FS  +T + +   +++  ++L EL+SL+N++D+S+ L   D+V 
Sbjct: 624 QLIAKEVISSLISLQRFSKLATIDFLYNEFLNEVALLDELQSLKNLNDLSINLSTSDSVE 683

Query: 122 RVKSSPKLQSCIKRLAVVLMASFLLPLDL------RMDHLETLEIDRCSLESKNDYFGDQ 175
           +  +SP LQ CI+ L +V   S +  LD+      RM HLE LE+  C   S+       
Sbjct: 684 KFFNSPILQGCIRELTLV-ECSEMTSLDISLSSMTRMKHLEKLELRFCQSISELRVRPCL 742

Query: 176 GRTRTYCFRNLRHLSVKTCPCMTDLKWIRYAPNLQFLYVSYCPRLSEIIGTYESPGTSEI 235
            R     F +LR L +  CP + DL W+ YAP L+ L +  C  ++E+I    + G  ++
Sbjct: 743 IRKANPSFSSLRFLHIGLCP-IRDLTWLIYAPKLETLELVNCDSVNEVINA--NCGNVKV 799

Query: 236 EESQDFFSNLMVIDLRHLPSLTSICCGVVPFPSLQTISVNGCPSLRKLPLNSGSAKNSLN 295
           E   + FSNL  + L  LP+L  I    + FPSL+ + V+ CP LRKLP +S S  N+LN
Sbjct: 800 EADHNIFSNLTKLYLVKLPNLHCIFHRALSFPSLEKMHVSECPKLRKLPFDSNS-NNTLN 858

Query: 296 AIRGSREWWDRLEWEDEDTRNVFASKFLE 324
            I+G R WWD L+W++E  +++ +SKF+E
Sbjct: 859 VIKGERSWWDGLQWDNEGLKDLLSSKFVE 887

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082688|emb|CBI21693.3| unnamed protein product [Vitis vinifera]

 Score =  198 bits (504), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 134/324 (41%), Positives = 188/324 (58%), Gaps = 24/324 (7%)

Query: 1   MHALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMR 60
           M  + VLDLS N +L++LP  IG L+NL YLNLS T I  +P  +  LKNLK L LD M 
Sbjct: 86  MPIIRVLDLSNNYELIELPVEIGNLVNLQYLNLSRTSIENIPVELKNLKNLKYLILDNMN 145

Query: 61  YLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAV 120
            L  +P Q++S LSSLQ+FS F++     +  D  ++L +LE LE I+DIS+ L  V + 
Sbjct: 146 SLQPLPSQMLSVLSSLQLFSMFNSP----YKGDHRTLLEDLEQLEYINDISIDLTTVFSA 201

Query: 121 NRVKSSPKLQSCIKRLAVVLMASFLLPLDLRMDHLETLEIDRC--------SLESK--ND 170
             + +S KLQS  +RL +    +  L L     ++E L I  C        SLE +  + 
Sbjct: 202 QALFNSHKLQSSTRRLRLFNCKN--LNLVQLSPYIEMLHISFCHAFKDVQISLEKEVLHS 259

Query: 171 YFGDQGRTRTYCFRNLRHLSVKTCPCMTDLKWIRYAPNLQFLYVSYCPRLSEIIGTYESP 230
            F   G    +C  +L H+++  C  + +L W+ YAPNL+FL +  C  L E++   E  
Sbjct: 260 KFPRHG----HCLYHLCHVNISWCSKLLNLTWLIYAPNLKFLSIDDCGSLEEVVEI-EKS 314

Query: 231 GTSEIEESQDFFSNLMVIDLRHLPSLTSICCGVVPFPSLQTISVNGCPSLRKLPLNS--G 288
             SE+E + D FS L+ + L +LP L SIC     FPSL+ I+V GCP +RKLP +S  G
Sbjct: 315 EVSELELNFDLFSRLVSLTLINLPKLRSICRWRQSFPSLREITVLGCPRIRKLPFDSDTG 374

Query: 289 SAKNSLNAIRGSREWWDRLEWEDE 312
           ++KN L  I G +EWWD LEWED+
Sbjct: 375 TSKN-LEKIIGEQEWWDGLEWEDK 397

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482621|ref|XP_002280315.2| PREDICTED: disease resistance protein RPS5-like [Vitis vinifera]

 Score =  198 bits (503), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 131/338 (38%), Positives = 198/338 (58%), Gaps = 23/338 (6%)

Query: 1   MHALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMR 60
           M  + VLDLS N +L +LP +IG+L +L YLNL++TRI +LP  +  LKNL ILRLD ++
Sbjct: 519 MPLIRVLDLSANYNLSELPTSIGELNDLRYLNLTSTRIRELPIELKNLKNLMILRLDHLQ 578

Query: 61  YLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAV 120
            L  +P  +IS+L+SL++FS ++T +    +    ++L ELESL NI++I +T+ +  ++
Sbjct: 579 SLETIPQDLISNLTSLKLFSMWNTNI----FSGVETLLEELESLNNINEIGITISSALSL 634

Query: 121 NRVKSSPKLQSCIKRLAVVLMASFLLPLDL------RMDHLETLEIDRC-----SLE--- 166
           N++K S KLQ CI+ L +      ++ L+L      RM+HL  LE+D C     S+E   
Sbjct: 635 NKLKRSHKLQRCIRHLQLHKWGD-VITLELSSLFLKRMEHLIDLEVDHCDDVKVSMEREM 693

Query: 167 SKNDYFG--DQGRTRTYCFRNLRHLSVKTCPCMTDLKWIRYAPNLQFLYVSYCPRLSEII 224
            +ND  G  +    R     +LR++ +K C  + DL W+ YA  L+ LYV  C  +  ++
Sbjct: 694 KQNDVIGLSNYNVAREQYIYSLRYIGIKNCSKLLDLTWVIYASCLEELYVEDCESIELVL 753

Query: 225 GTYESPGTSEIEESQDFFSNLMVIDLRHLPSLTSICCGVVPFPSLQTISVNGCPSLRKLP 284
             +   G  EI E  D FS L  + L  LP L SI    + FPSL+ I V  C SLR LP
Sbjct: 754 --HHDHGAYEIVEKLDIFSRLKCLKLNRLPRLKSIYQHPLLFPSLEIIKVYDCKSLRSLP 811

Query: 285 LNSGSAKNSLNAIRGSREWWDRLEWEDEDTRNVFASKF 322
            +S ++ N+L  I+G   WW+RL+W+DE  ++ F   F
Sbjct: 812 FDSNTSNNNLKKIKGGTNWWNRLKWKDETIKDCFTPYF 849

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225465083|ref|XP_002266249.1| PREDICTED: probable disease resistance protein At5g63020-like [Vitis vinifera]

 Score =  197 bits (501), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 134/324 (41%), Positives = 188/324 (58%), Gaps = 24/324 (7%)

Query: 1   MHALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMR 60
           M  + VLDLS N +L++LP  IG L+NL YLNLS T I  +P  +  LKNLK L LD M 
Sbjct: 558 MPIIRVLDLSNNYELIELPVEIGNLVNLQYLNLSRTSIENIPVELKNLKNLKYLILDNMN 617

Query: 61  YLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAV 120
            L  +P Q++S LSSLQ+FS F++     +  D  ++L +LE LE I+DIS+ L  V + 
Sbjct: 618 SLQPLPSQMLSVLSSLQLFSMFNSP----YKGDHRTLLEDLEQLEYINDISIDLTTVFSA 673

Query: 121 NRVKSSPKLQSCIKRLAVVLMASFLLPLDLRMDHLETLEIDRC--------SLESK--ND 170
             + +S KLQS  +RL +    +  L L     ++E L I  C        SLE +  + 
Sbjct: 674 QALFNSHKLQSSTRRLRLFNCKN--LNLVQLSPYIEMLHISFCHAFKDVQISLEKEVLHS 731

Query: 171 YFGDQGRTRTYCFRNLRHLSVKTCPCMTDLKWIRYAPNLQFLYVSYCPRLSEIIGTYESP 230
            F   G    +C  +L H+++  C  + +L W+ YAPNL+FL +  C  L E++   E  
Sbjct: 732 KFPRHG----HCLYHLCHVNISWCSKLLNLTWLIYAPNLKFLSIDDCGSLEEVV-EIEKS 786

Query: 231 GTSEIEESQDFFSNLMVIDLRHLPSLTSICCGVVPFPSLQTISVNGCPSLRKLPLNS--G 288
             SE+E + D FS L+ + L +LP L SIC     FPSL+ I+V GCP +RKLP +S  G
Sbjct: 787 EVSELELNFDLFSRLVSLTLINLPKLRSICRWRQSFPSLREITVLGCPRIRKLPFDSDTG 846

Query: 289 SAKNSLNAIRGSREWWDRLEWEDE 312
           ++KN L  I G +EWWD LEWED+
Sbjct: 847 TSKN-LEKIIGEQEWWDGLEWEDK 869

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297743311|emb|CBI36178.3| unnamed protein product [Vitis vinifera]

 Score =  196 bits (499), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 136/340 (40%), Positives = 188/340 (55%), Gaps = 24/340 (7%)

Query: 1   MHALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMR 60
           M  L VLDLS N +L +LP  IGKL  L YLNLS+TRI +LP  +  LKNL IL +DGM+
Sbjct: 382 MLLLRVLDLSDNDNLSELPTGIGKLGALRYLNLSHTRIRELPIELKNLKNLMILIMDGMK 441

Query: 61  YLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAV 120
            L  +P  +ISSL SL++FS + + +         +VL ELESL +I +IS+T+CN  + 
Sbjct: 442 SLEIIPQDMISSLISLKLFSIYESNITS---GVEETVLEELESLNDISEISITICNALSF 498

Query: 121 NRVKSSPKLQSCIKRLAVVLMASFLLPLDL------RMDHLETLEIDRCS-LESKNDYFG 173
           N++KSS KLQ CI+ L  +     ++ LDL      R +HL+ L I  C+ L+       
Sbjct: 499 NKLKSSHKLQRCIRHLH-LHKGGDVISLDLSSSFFKRTEHLKQLYISHCNKLKEVKINVE 557

Query: 174 DQG-----------RTRTYCFRNLRHLSVKTCPCMTDLKWIRYAPNLQFLYVSYCPRLSE 222
            QG             R   F  LR + V+ C  + DL W+ YAP L+ LYV  C  + E
Sbjct: 558 RQGIHNDLTLPNKIAAREEYFHTLRAVFVEHCSKLLDLTWLVYAPYLERLYVEDCELIEE 617

Query: 223 IIGTYESPGTSEIEESQDFFSNLMVIDLRHLPSLTSICCGVVPFPSLQTISVNGCPSLRK 282
           +I   +     EI+E  D FS L  + L  LP L SI    + FPSL+ I V  C  LR 
Sbjct: 618 VI--RDDSEVCEIKEKLDIFSRLKSLKLNRLPRLKSIYQHPLLFPSLEIIKVYECKGLRS 675

Query: 283 LPLNSGSAKNSLNAIRGSREWWDRLEWEDEDTRNVFASKF 322
           LP +S ++ NSL  I+G   WW++L+W +E  ++ F   F
Sbjct: 676 LPFDSNTSNNSLKKIKGETSWWNQLKWNNETCKHSFTPYF 715

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482617|ref|XP_002280166.2| PREDICTED: disease resistance protein RPS5-like [Vitis vinifera]

 Score =  196 bits (498), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 136/340 (40%), Positives = 188/340 (55%), Gaps = 24/340 (7%)

Query: 1   MHALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMR 60
           M  L VLDLS N +L +LP  IGKL  L YLNLS+TRI +LP  +  LKNL IL +DGM+
Sbjct: 558 MLLLRVLDLSDNDNLSELPTGIGKLGALRYLNLSHTRIRELPIELKNLKNLMILIMDGMK 617

Query: 61  YLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAV 120
            L  +P  +ISSL SL++FS + + +         +VL ELESL +I +IS+T+CN  + 
Sbjct: 618 SLEIIPQDMISSLISLKLFSIYESNITS---GVEETVLEELESLNDISEISITICNALSF 674

Query: 121 NRVKSSPKLQSCIKRLAVVLMASFLLPLDL------RMDHLETLEIDRCS-LESKNDYFG 173
           N++KSS KLQ CI+ L  +     ++ LDL      R +HL+ L I  C+ L+       
Sbjct: 675 NKLKSSHKLQRCIRHLH-LHKGGDVISLDLSSSFFKRTEHLKQLYISHCNKLKEVKINVE 733

Query: 174 DQG-----------RTRTYCFRNLRHLSVKTCPCMTDLKWIRYAPNLQFLYVSYCPRLSE 222
            QG             R   F  LR + V+ C  + DL W+ YAP L+ LYV  C  + E
Sbjct: 734 RQGIHNDLTLPNKIAAREEYFHTLRAVFVEHCSKLLDLTWLVYAPYLERLYVEDCELIEE 793

Query: 223 IIGTYESPGTSEIEESQDFFSNLMVIDLRHLPSLTSICCGVVPFPSLQTISVNGCPSLRK 282
           +I   +     EI+E  D FS L  + L  LP L SI    + FPSL+ I V  C  LR 
Sbjct: 794 VI--RDDSEVCEIKEKLDIFSRLKSLKLNRLPRLKSIYQHPLLFPSLEIIKVYECKGLRS 851

Query: 283 LPLNSGSAKNSLNAIRGSREWWDRLEWEDEDTRNVFASKF 322
           LP +S ++ NSL  I+G   WW++L+W +E  ++ F   F
Sbjct: 852 LPFDSNTSNNSLKKIKGETSWWNQLKWNNETCKHSFTPYF 891

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255574524|ref|XP_002528173.1| Disease resistance protein RFL1, putative [Ricinus communis] gi|223532385|gb|EEF34180.1| Disease resistance protein RFL1, putative [Ricinus communis]

 Score =  195 bits (495), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 133/330 (40%), Positives = 187/330 (56%), Gaps = 20/330 (6%)

Query: 2   HALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRY 61
            +L VLDLS+N DL KLP  +GKLINL +L+LS T I  LP  +  LKNLK L +DG   
Sbjct: 564 KSLQVLDLSHNEDLTKLPVEVGKLINLRHLDLSFTGINALPLEVRELKNLKTLLVDGTEM 623

Query: 62  LAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVN 121
           L  +P  VIS L SLQ+FS         H  +  ++L  L+ L+ +  + + L   +++ 
Sbjct: 624 L--IPKVVISQLLSLQIFSKDIR-----HPSNEKTLLEGLDCLKRLICLGIILTKYESIE 676

Query: 122 RVKSSPKLQSCIKRLAVVLMASFLLPLDL------RMDHLETLEIDRCSLESKNDYFGDQ 175
            + +S KLQSCI  L +    S L  L++      RM  LE L+I  CSLE       D+
Sbjct: 677 YLLNSTKLQSCINNLTLA-DCSDLHQLNISSSSMIRMRTLEMLDIRSCSLEELKILPDDK 735

Query: 176 GRTRTYCFRNLRHLSVKTCPCMTDLKWIRYAPNLQFLYVSYCPRLSEIIGTYESPGTSEI 235
           G     CF+ L  + ++ CP + +L W+ YA  LQ L +  C  + EII   +    +E 
Sbjct: 736 GLY--GCFKELSRVVIRKCP-IKNLTWLIYARMLQTLELDDCNSVVEIIA--DDIVETED 790

Query: 236 EESQDFFSNLMVIDLRHLPSLTSICCGVVPFPSLQTISVNGCPSLRKLPLNSGSAKNSLN 295
           E  Q  FS L  +DL +L SL +IC   + FPSL+ I+V  CP LRKLP NS SA+ SL 
Sbjct: 791 ETCQKIFSQLKRLDLSYLSSLHTICRQALSFPSLEKITVYECPRLRKLPFNSDSARTSLK 850

Query: 296 AIRGSREWWDRLEWEDEDTRNVFASKFLEL 325
            IRG   WW+ L+W DE+ + +F+S+F++L
Sbjct: 851 EIRGKENWWNGLQW-DEEVKKIFSSRFVKL 879

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147856932|emb|CAN80756.1| hypothetical protein VITISV_019820 [Vitis vinifera]

 Score =  194 bits (493), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 131/341 (38%), Positives = 200/341 (58%), Gaps = 29/341 (8%)

Query: 1   MHALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMR 60
           M  + VLDLS N +L +LP +IG+L +L YLNL++TRI +LP  +  LKNL ILRLD ++
Sbjct: 402 MPLIRVLDLSANYNLSELPTSIGELNDLRYLNLTSTRIRELPIELKNLKNLMILRLDYLQ 461

Query: 61  YLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAV 120
            L  +P  +IS+L+SL++FS ++T +    +    ++L ELESL +I+DI +T+ +  ++
Sbjct: 462 SLETIPQDLISNLTSLKLFSMWNTNI----FSGVETLLEELESLNDINDIRITISSALSL 517

Query: 121 NRVKSSPKLQSCIKRL---------AVVLMASFLLPLDLRMDHLETLEIDRC-----SLE 166
           N++K S KLQ CI+ L          + L +SFL     RM+HL  LE+  C     S+E
Sbjct: 518 NKLKRSHKLQRCIRSLQLHKRGDVITLELSSSFLK----RMEHLLELEVLHCDDVKISME 573

Query: 167 ---SKNDYFG--DQGRTRTYCFRNLRHLSVKTCPCMTDLKWIRYAPNLQFLYVSYCPRLS 221
              ++N+  G  +    R   F +LR+++++ C  + DL W+ YA  L+ LYV  C  + 
Sbjct: 574 REMTQNNVTGLSNYNVAREQYFYSLRNIAIQNCSKLLDLTWVVYASCLEVLYVEDCKSIE 633

Query: 222 EIIGTYESPGTSEIEESQDFFSNLMVIDLRHLPSLTSICCGVVPFPSLQTISVNGCPSLR 281
            ++  +   G  EI E  D FS L  + L  LP L SI    + FPSL+ I V  C SLR
Sbjct: 634 LVL--HHDHGAYEIVEKLDVFSRLKCLKLNRLPRLKSIYQHPLLFPSLEIIKVYACKSLR 691

Query: 282 KLPLNSGSAKNSLNAIRGSREWWDRLEWEDEDTRNVFASKF 322
            LP +S ++ N+L  I+G   WW+RL+W+DE  ++ F   F
Sbjct: 692 SLPFDSNTSNNNLKKIKGGTNWWNRLKWKDETIKDCFTPYF 732

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482633|ref|XP_003632795.1| PREDICTED: disease resistance protein RPS5-like [Vitis vinifera]

 Score =  193 bits (490), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 130/341 (38%), Positives = 198/341 (58%), Gaps = 29/341 (8%)

Query: 1   MHALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMR 60
           M  + VLDLS N +L +LP +IG+L +L YLNL++TRI +LP  +  LKNL ILRLD ++
Sbjct: 519 MPLIRVLDLSANYNLSELPTSIGELNDLRYLNLTSTRIRELPIELKNLKNLMILRLDHLQ 578

Query: 61  YLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAV 120
            L  +P  +IS+L+SL++FS ++T +    +    ++L ELESL +I +I +T+ +  ++
Sbjct: 579 SLETIPQDLISNLTSLKLFSMWNTNI----FSGVETLLEELESLNDISEIRITISSALSL 634

Query: 121 NRVKSSPKLQSCIKRL---------AVVLMASFLLPLDLRMDHLETLEIDRC-----SLE 166
           N++K S KLQ CI  L          + L +SFL     RM+HL+ LE+  C     S+E
Sbjct: 635 NKLKRSHKLQRCISDLLLHKWGDVMTLELSSSFLK----RMEHLQELEVRHCDDVKISME 690

Query: 167 ---SKNDYFG--DQGRTRTYCFRNLRHLSVKTCPCMTDLKWIRYAPNLQFLYVSYCPRLS 221
              ++ND  G  +    R   F +L +++++ C  + DL W+ YA  L+ LYV  C  + 
Sbjct: 691 REMTQNDVTGLSNYNVAREQYFYSLCYITIQNCSKLLDLTWVVYASCLEVLYVENCKSIE 750

Query: 222 EIIGTYESPGTSEIEESQDFFSNLMVIDLRHLPSLTSICCGVVPFPSLQTISVNGCPSLR 281
            ++  +   G  EI E  D FS L  + L  LP L SI    + FPSL+ I V  C SLR
Sbjct: 751 LVL--HHDHGAYEIVEKSDIFSRLKCLKLNKLPRLKSIYQHPLLFPSLEIIKVYDCKSLR 808

Query: 282 KLPLNSGSAKNSLNAIRGSREWWDRLEWEDEDTRNVFASKF 322
            LP +S ++ N+L  I+G   WW+RL+W+DE  ++ F   F
Sbjct: 809 SLPFDSNTSNNNLKKIKGGTNWWNRLKWKDETIKDCFTPYF 849

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147782477|emb|CAN75117.1| hypothetical protein VITISV_002420 [Vitis vinifera]

 Score =  192 bits (487), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 132/330 (40%), Positives = 183/330 (55%), Gaps = 9/330 (2%)

Query: 1    MHALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMR 60
            M  + VL+LS N +LV+LP  I KL +L YLNL  TRI  +P  +  L  L+ L LDG R
Sbjct: 1049 MPVIRVLNLSNNANLVELPLEICKLESLEYLNLEWTRIKMMPKELKNLTKLRCLILDGAR 1108

Query: 61   YLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAV 120
             L  +P  VIS L +LQ+F        ++   D+  VL E+E LE +  IS++L  V AV
Sbjct: 1109 GLVVIPSNVISCLPNLQMFRMMHRFFPDIVEYDAVGVLQEIECLEYLSWISISLFTVPAV 1168

Query: 121  NRVKSSPKLQSCIKRLAVVL---MASFLLPLDLRMDHLETLEIDRCS-LESKNDYFG-DQ 175
             +  +S  LQ  I+ L +     +    LPL   +  L  LE++ C+ LE      G  +
Sbjct: 1169 QKYLTSLMLQKRIRELDMTACPGLKVVELPLS-TLQTLTVLELEHCNDLERVKINRGLSR 1227

Query: 176  GRTRTYCFRNLRHLSVKTCPCMTDLKWIRYAPNLQFLYVSYCPRLSEIIGTYESPGTSEI 235
            G      F NL  +++  C  + DL W+ YAP+L+ L V  C  + EIIG+ E  G SEI
Sbjct: 1228 GHISNSNFHNLVRVNISGCRFL-DLTWLIYAPSLESLMVFSCREMEEIIGSDEY-GDSEI 1285

Query: 236  EESQ-DFFSNLMVIDLRHLPSLTSICCGVVPFPSLQTISVNGCPSLRKLPLNSGSAKNSL 294
            ++     FS L+ + L  LP+L SI    +PFPSL+ I V  CP+LRKLPLNS SA N+L
Sbjct: 1286 DQQNLSIFSRLVTLWLDDLPNLKSIYKRALPFPSLKKIHVIRCPNLRKLPLNSNSATNTL 1345

Query: 295  NAIRGSREWWDRLEWEDEDTRNVFASKFLE 324
              I G   WW+ LEWED++ + +F   F E
Sbjct: 1346 KEIEGHLTWWEELEWEDDNLKRIFTPYFKE 1375

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	325
TAIR|locus:2008440	899	AT1G61180 [Arabidopsis thalian	0.846	0.305	0.351	2.6e-30
TAIR|locus:2197739	762	AT1G61300 [Arabidopsis thalian	0.827	0.353	0.348	5.8e-29
TAIR|locus:2171589	948	AT5G47260 [Arabidopsis thalian	0.855	0.293	0.340	7.2e-29
TAIR|locus:2008510	967	AT1G61190 "AT1G61190" [Arabido	0.852	0.286	0.356	1.2e-28
TAIR|locus:2034765	884	AT1G12290 [Arabidopsis thalian	0.843	0.309	0.344	4.6e-28
TAIR|locus:2166320	888	AT5G63020 [Arabidopsis thalian	0.836	0.306	0.345	4.6e-28
TAIR|locus:2132741	892	AT4G10780 [Arabidopsis thalian	0.861	0.313	0.324	7.6e-28
TAIR|locus:2034770	894	SUMM2 "AT1G12280" [Arabidopsis	0.836	0.304	0.335	5.5e-27
TAIR|locus:2031366	898	AT1G63350 "AT1G63350" [Arabido	0.855	0.309	0.333	1.8e-25
TAIR|locus:2201996	889	RPS5 "AT1G12220" [Arabidopsis	0.858	0.313	0.337	1.2e-24

TAIR|locus:2008440 AT1G61180 [Arabidopsis thaliana (taxid:3702)]

 Score = 345 (126.5 bits), Expect = 2.6e-30, P = 2.6e-30
 Identities = 104/296 (35%), Positives = 153/296 (51%)

Query:     1 MHALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMR 60
             M  L VLDLSYN D  KLPE I  L++L +L+LSNT I  +P G+  LK L  L L    
Sbjct:   556 MQKLVVLDLSYNRDFNKLPEQISGLVSLQFLDLSNTSIEHMPIGLKELKKLTFLDLTYTD 615

Query:    61 YLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAV 120
              L  +    IS L SL++     +++   H     SVL EL+ L+N+ ++++T+ + + +
Sbjct:   616 RLCSI--SGISRLLSLRLLRLLGSKV---H--GDASVLKELQQLQNLQELAITV-SAELI 667

Query:   121 NRVKSSPKLQS--CIKR-LAVVLMASFLLPLD----LRMDHLETLEIDRCSLESKNDYFG 173
             +  +   KL S  CI+  L      SFL  ++    LR+++    EI     E+++ Y  
Sbjct:   668 SLDQRLAKLISNLCIEGFLQKPFDLSFLASMENLSSLRVENSYFSEIKCRESETESSYL- 726

Query:   174 DQGRTRTYCFRNLRHLSVKTCPCMTDLKWIRYAPNLQFLYVSYCPRLSEIIGTYESPGTS 233
              +   +  CF NL  L +  C  M DL WI +APNL  L +     + EII   ++   +
Sbjct:   727 -RINPKIPCFTNLSRLEIMKCHSMKDLTWILFAPNLVVLLIEDSREVGEIINKEKATNLT 785

Query:   234 EIEESQDFFSNLMVIDLRHLPSLTSICCGVVPFPSLQTISVNGCPSLRKLPLNSGS 289
              I      F  L  + L +LP L SI    +PFP L T+ V+ CP LRKLPLN+ S
Sbjct:   786 SITP----FLKLEWLILYNLPKLESIYWSPLPFPVLLTMDVSNCPKLRKLPLNATS 837

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2197739 AT1G61300 [Arabidopsis thaliana (taxid:3702)]

 Score = 331 (121.6 bits), Expect = 5.8e-29, P = 5.8e-29
 Identities = 105/301 (34%), Positives = 151/301 (50%)

Query:     1 MHALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMR 60
             M  L VLDLSYN D  KLPE I  L++L +L+LSNT I QLP G+  LK L  L L    
Sbjct:   445 MQKLVVLDLSYNRDFNKLPEQISGLVSLQFLDLSNTSIKQLPVGLKKLKKLTFLNL---A 501

Query:    61 YLAFVPCQV--ISSLSSLQVFSWFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVD 118
             Y   + C +  IS L SL++     +++   H     SVL EL+ L+N+  +++TL    
Sbjct:   502 YTVRL-CSISGISRLLSLRLLRLLGSKV---H--GDASVLKELQKLQNLQHLAITLSAEL 555

Query:   119 AVNRVKSSPKLQSCIKRLAV--VLMASFLLPLDLRMDHLETLEID-------RC-SLESK 168
             ++N+     +L + I  L +   L   F L     M++L +L +        +C   E+ 
Sbjct:   556 SLNQ-----RLANLISILGIEGFLQKPFDLSFLASMENLSSLWVKNSYFSEIKCRESETA 610

Query:   169 NDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDLKWIRYAPNLQFLYVSYCPRLSEIIGTYE 228
             + Y   +   +  CF NL  L +  C  + DL WI +APNL +LY+     + EII   +
Sbjct:   611 SSYL--RINPKIPCFTNLSRLGLSKCHSIKDLTWILFAPNLVYLYIEDSREVGEIINKEK 668

Query:   229 SPGTSEIEESQDFFSNLMVIDLRHLPSLTSICCGVVPFPSLQTISVNGCPSLRKLPLNSG 288
             +   + I      F  L  + L +LP L SI    + FP L  I V  CP LRKLPLN+ 
Sbjct:   669 ATNLTSITP----FLKLERLILYNLPKLESIYWSPLHFPRLLIIHVLDCPKLRKLPLNAT 724

Query:   289 S 289
             S
Sbjct:   725 S 725

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2171589 AT5G47260 [Arabidopsis thaliana (taxid:3702)]

 Score = 332 (121.9 bits), Expect = 7.2e-29, P = 7.2e-29
 Identities = 100/294 (34%), Positives = 158/294 (53%)

Query:     1 MHALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMR 60
             M  L VLDLS+N +L +LPE +  L+ L +LNLS T I  LP G+  LK+L  L LD   
Sbjct:   543 MTGLVVLDLSFNRELAELPEEVSSLVLLRFLNLSWTCIKGLPLGLKELKSLIHLDLDYTS 602

Query:    61 YLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAV 120
              L  V   VI+SL +LQV   F +  ++L       ++ +++ L+++ ++S+T+     +
Sbjct:   603 NLQEV--DVIASLLNLQVLRLFHSVSMDL------KLMEDIQLLKSLKELSLTVRGSSVL 654

Query:   121 NRVKSSPKLQSCIKRLAVV---LMASFLLPLDLRMDHLETLEIDRCS-LESKNDYFGDQG 176
              R+ S  +L S I+RL +    ++   +L L+      E L+I  C+ LE   D+     
Sbjct:   655 QRLLSIQRLASSIRRLHLTETTIVDGGILSLNAIFSLCE-LDILGCNILEITIDWRCTIQ 713

Query:   177 RTRTYCFRNLRHLSVKTCPCMTDLKWIRYAPNLQFLYVSYCPRLSEIIGTYESPGTSEI- 235
             R     F+N+R +++  C  + DL W+  AP L  L VS CP++ E+I   +    +++ 
Sbjct:   714 REIIPQFQNIRTMTIHRCEYLRDLTWLLLAPCLGELSVSECPQMEEVIS--KDKAMAKLG 771

Query:   236 EESQDFFSNLMVIDLRHLPSLTSICCGVVPFPSLQTISVNGCPSLRKLPLNSGS 289
               S+  F NL  + L  LP L SI    +PFP L+ + +  CP LR+LP NS S
Sbjct:   772 NTSEQPFQNLTKLVLDGLPKLESIYWTPLPFPVLEYLVIRRCPELRRLPFNSES 825

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0045036 "protein targeting to chloroplast" evidence=RCA

TAIR|locus:2008510 AT1G61190 "AT1G61190" [Arabidopsis thaliana (taxid:3702)]

 Score = 330 (121.2 bits), Expect = 1.2e-28, P = 1.2e-28
 Identities = 106/297 (35%), Positives = 141/297 (47%)

Query:     1 MHALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMR 60
             M  L VLDLS+N D  +LPE I  L++L YL+LS TRI QLP G+  LK L  L L    
Sbjct:   560 MQKLVVLDLSHNPDFNELPEQISGLVSLQYLDLSWTRIEQLPVGLKELKKLIFLNLCFTE 619

Query:    61 YLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAV 120
              L    C  IS +S L    W S     +H     SVL EL+ LEN+ D+ +T  + + +
Sbjct:   620 RL----CS-ISGISRLLSLRWLSLRESNVH--GDASVLKELQQLENLQDLRITE-SAELI 671

Query:   121 NRVKSSPKLQSCIKRLAVVLMASFLLPLDLRMDHLETLEIDRCSLESKNDYFGDQGRTRT 180
             +  +   KL S + R+   L   F L     M++L  L ++       N    +     +
Sbjct:   672 SLDQRLAKLISVL-RIEGFLQKPFDLSFLASMENLYGLLVENSYFSEINIKCRESETESS 730

Query:   181 Y--------CFRNLRHLSVKTCPCMTDLKWIRYAPNLQFLYVSYCPRLSEIIGTYESPGT 232
             Y        CF NL  L +  C  M DL WI +APNL  L +     + EII   ++   
Sbjct:   731 YLHINPKIPCFTNLTGLIIMKCHSMKDLTWILFAPNLVNLDIRDSREVGEIINKEKAINL 790

Query:   233 SEIEESQDFFSNLMVIDLRHLPSLTSICCGVVPFPSLQTISVNGCPSLRKLPLNSGS 289
             + I      F  L  + L  LP L SI    +PFP L  I V  CP LRKLPLN+ S
Sbjct:   791 TSIITP---FQKLERLFLYGLPKLESIYWSPLPFPLLSNIVVKYCPKLRKLPLNATS 844

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2034765 AT1G12290 [Arabidopsis thaliana (taxid:3702)]

 Score = 324 (119.1 bits), Expect = 4.6e-28, P = 4.6e-28
 Identities = 101/293 (34%), Positives = 155/293 (52%)

Query:     1 MHALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMR 60
             M  L VLDLS+N++L  LP+ I +L++L YL+LS + IG+LP G+  LK L  L L+ M 
Sbjct:   564 MPRLVVLDLSWNVNLSGLPDQISELVSLRYLDLSYSSIGRLPVGLLKLKKLMHLNLESML 623

Query:    61 YLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAV 120
              L  V    I  LS+L+     +  L+ L    + S+L ELE LEN+  +++ + +  A+
Sbjct:   624 CLESV--SGIDHLSNLK-----TVRLLNLRMWLTISLLEELERLENLEVLTIEIISSSAL 676

Query:   121 NRVKSSPKLQSCIKRLAV-VLMASFLLPLDL-RMDHLETLEIDRCSLESKNDYFGDQGRT 178
              ++  S +L  C+++++V  L    +  L L  +  L  + I  C +    D   ++  +
Sbjct:   677 EQLLCSHRLVRCLQKVSVKYLDEESVRILTLPSIGDLREVFIGGCGMR---DIIIERNTS 733

Query:   179 RTY-CFRNLRHLSVKTCPCMTDLKWIRYAPNLQFLYVSYCPRLSEIIGTYESPGTSEIEE 237
              T  CF NL  + +  C  + DL W+ +APNL  L V    ++ EII + E   T++I  
Sbjct:   734 LTSPCFPNLSKVLITGCNGLKDLTWLLFAPNLTHLNVWNSRQIEEII-SQEKASTADIVP 792

Query:   238 SQDFFSNLMVIDLRHLPSLTSICCGVVPFPSLQTISV-NGCPSLRKLPLNSGS 289
                 F  L  + L  LP L SI    +PFP L  I+V N C  L KLPL+S S
Sbjct:   793 ----FRKLEYLHLWDLPELKSIYWNPLPFPCLNQINVQNKCRKLTKLPLDSQS 841

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

TAIR|locus:2166320 AT5G63020 [Arabidopsis thaliana (taxid:3702)]

 Score = 324 (119.1 bits), Expect = 4.6e-28, P = 4.6e-28
 Identities = 102/295 (34%), Positives = 144/295 (48%)

Query:     1 MHALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMR 60
             M  L VLDLS N DL  LP  I + ++L YL+LS TRI   P G+  L+ L  L L+  R
Sbjct:   556 MPMLVVLDLSMNRDLRHLPNEISECVSLQYLSLSRTRIRIWPAGLVELRKLLYLNLEYTR 615

Query:    61 YLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAV 120
              +  + C  IS L+SL+V   F +   E        VL EL+ LEN+  +++TL     +
Sbjct:   616 MVESI-CG-ISGLTSLKVLRLFVSGFPE-----DPCVLNELQLLENLQTLTITLGLASIL 668

Query:   121 NRVKSSPKLQSCIKRLAVVLM------ASFLLPLD-LRMDHLETLEIDRCSLESKNDYFG 173
              +  S+ +L SC + L +  +       SF+  +D L+  H    +I    ++       
Sbjct:   669 EQFLSNQRLASCTRALRIENLNPQSSVISFVATMDSLQELHFADSDIWEIKVKRNETVLP 728

Query:   174 DQGRTRTYCFRNLRHLSVKTCPCMTDLKWIRYAPNLQFLYVSYCPRLSEIIGTYESPGTS 233
                 T T  F NL  +S++ C  + DL W+ +APNL  L V     L E+I         
Sbjct:   729 LHIPTTTTFFPNLSQVSLEFCTRLRDLTWLIFAPNLTVLRVISASDLKEVIN-------K 781

Query:   234 EIEESQDF--FSNLMVIDLRHLPSLTSICCGVVPFPSLQTISVNGCPSLRKLPLN 286
             E  E Q+   F  L  + L ++  L  I  G +PFP LQ I VNGC  LRKLPLN
Sbjct:   782 EKAEQQNLIPFQELKELRLENVQMLKHIHRGPLPFPCLQKILVNGCSELRKLPLN 836

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2132741 AT4G10780 [Arabidopsis thaliana (taxid:3702)]

 Score = 322 (118.4 bits), Expect = 7.6e-28, P = 7.6e-28
 Identities = 96/296 (32%), Positives = 151/296 (51%)

Query:     1 MHALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMR 60
             M  L VLDLS N  L  LPE I +L+ L YL+LS+T I  LP  +  LK L  L L+ MR
Sbjct:   560 MRKLVVLDLSENHQLDGLPEQISELVALRYLDLSHTNIEGLPACLQDLKTLIHLNLECMR 619

Query:    61 YLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAV 120
              L  +    IS LSSL+     ++ ++    +D  SV  EL  LE++  +++ + +   +
Sbjct:   620 RLGSIAG--ISKLSSLRTLGLRNSNIM----LDVMSV-KELHLLEHLEILTIDIVSTMVL 672

Query:   121 NRVKSSPKLQSCIKRLAV-VLMASFLLPLDLR---MDHLETLEIDRCSL-ESKNDYFGDQ 175
              ++  +  L +C++ +++  L+        LR   MD L +L +  C + E + +     
Sbjct:   673 EQMIDAGTLMNCMQEVSIRCLIYDQEQDTKLRLPTMDSLRSLTMWNCEISEIEIERLTWN 732

Query:   176 GRTRTYCFRNLRHLSVKTCPCMTDLKWIRYAPNLQFLYVSYCPRLSEIIGTYESPGTSEI 235
                 + CF NL  + +  C  + DL W+ +APN+ +L +    +L E+I   ++ G +E 
Sbjct:   733 TNPTSPCFFNLSQVIIHVCSSLKDLTWLLFAPNITYLMIEQLEQLQELISHAKATGVTEE 792

Query:   236 EESQDF----FSNLMVIDLRHLPSLTSICCGVVPFPSLQTISVNGCPSLRKLPLNS 287
             E+ Q      F  L ++ L  LP L SI    + FP L  I V  CP LRKLPL+S
Sbjct:   793 EQQQLHKIIPFQKLQILHLSSLPELKSIYWISLSFPCLSGIYVERCPKLRKLPLDS 848

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2034770 SUMM2 "AT1G12280" [Arabidopsis thaliana (taxid:3702)]

 Score = 314 (115.6 bits), Expect = 5.5e-27, P = 5.5e-27
 Identities = 98/292 (33%), Positives = 153/292 (52%)

Query:     4 LAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLA 63
             L VLDLS N  L KLP  I KL++L YL+LS T I +LP G+  LK L+ LRLD M+ L 
Sbjct:   565 LVVLDLSGNSSLRKLPNQISKLVSLRYLDLSWTYIKRLPVGLQELKKLRYLRLDYMKRLK 624

Query:    64 FVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRV 123
              +    IS++SSL+      +++     +D  S++ EL+ LE++  +++++ +   V ++
Sbjct:   625 SI--SGISNISSLRKLQLLQSKMS----LDM-SLVEELQLLEHLEVLNISIKSSLVVEKL 677

Query:   124 KSSPKLQSCIKRLA---VVLMASFLLPLDLRMDHLETLEIDRCSL-----ESKNDYFGDQ 175
              ++P+L  C++ L    V   +S +L L   MD+L  + I +C +     E K       
Sbjct:   678 LNAPRLVKCLQILVLRGVQEESSGVLTLP-DMDNLNKVIIRKCGMCEIKIERKTLSLSSN 736

Query:   176 GRTRTYCFRNLRHLSVKTCPCMTDLKWIRYAPNLQFLYVSYCPRLSEIIGTYESPGTSEI 235
                +T    NL  + + +C  + DL W+ +APNL  L V     +  II   ++   S I
Sbjct:   737 RSPKTQFLHNLSTVHISSCDGLKDLTWLLFAPNLTSLEVLDSELVEGIINQEKAMTMSGI 796

Query:   236 EESQDFFSNLMVIDLRHLPSLTSICCGVVPFPSLQTISVNGCPSLRKLPLNS 287
                   F  L  + L +L  L SI    + FP L+TI +  CP LRKLPL+S
Sbjct:   797 IP----FQKLESLRLHNLAMLRSIYWQPLSFPCLKTIHITKCPELRKLPLDS 844

GO:0006952 "defense response" evidence=IGI;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2031366 AT1G63350 "AT1G63350" [Arabidopsis thaliana (taxid:3702)]

 Score = 300 (110.7 bits), Expect = 1.8e-25, P = 1.8e-25
 Identities = 102/306 (33%), Positives = 161/306 (52%)

Query:     1 MHALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMR 60
             M  LAVLDLS N  L +LP  I +L++L YLNLS+T I  LP G+  LK L  L L+   
Sbjct:   560 MPKLAVLDLSGNYYLSELPNGISELVSLQYLNLSSTGIRHLPKGLQELKKLIHLYLERTS 619

Query:    61 YLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLAELESLENIHDISVTL--CNVD 118
              L  +    IS L +L+V      +L    Y      + ELE+LE++  ++ T+  C + 
Sbjct:   620 QLGSMVG--ISCLHNLKVL-----KLSGSSYAWDLDTVKELEALEHLEVLTTTIDDCTL- 671

Query:   119 AVNRVKSSPKLQSCIKRLAVVLMA-----SFLLPLDLRMDHLETLEIDRC-SLESKNDYF 172
               ++  SS +L SCI+ L +   +     S  + L + MD L+   I+ C + E K    
Sbjct:   672 GTDQFLSSHRLMSCIRFLKISNNSNRNRNSSRISLPVTMDRLQEFTIEHCHTSEIK---- 727

Query:   173 GDQGRTRTYCFRNLRHLSVKTCPCMTDLKWIRYAPNLQFLYVSYCPRLSEIIGTYESPGT 232
                GR  +  F +L  +++  C  + +L ++ +APNL+ L+V    +L +II   ++   
Sbjct:   728 --MGRICS--FSSLIEVNLSNCRRLRELTFLMFAPNLKRLHVVSSNQLEDIINKEKA--- 780

Query:   233 SEIEESQDF-FSNLMVIDLRHLPSLTSICCGVVPFPSLQTISVNGCPSLRKLPLNSGSAK 291
              + E+S    F  L  + L +L  L +I    +PFP L+ I+V GCP+L+KLPL+S S K
Sbjct:   781 HDGEKSGIVPFPKLNELHLYNLRELKNIYWSPLPFPCLEKINVMGCPNLKKLPLDSKSGK 840

Query:   292 NSLNAI 297
             +  N +
Sbjct:   841 HGGNGL 846

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2201996 RPS5 "AT1G12220" [Arabidopsis thaliana (taxid:3702)]

 Score = 292 (107.8 bits), Expect = 1.2e-24, P = 1.2e-24
 Identities = 100/296 (33%), Positives = 144/296 (48%)

Query:     1 MHALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMR 60
             M  L VLDLS N  L +LPE I +L +L Y NLS T I QLP G+  LK L  L L+ M 
Sbjct:   562 MPHLVVLDLSENQSLNELPEEISELASLRYFNLSYTCIHQLPVGLWTLKKLIHLNLEHMS 621

Query:    61 YLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAV 120
              L  +    IS+L +L+      + L+    +D  S++ EL+ LE++  I++ + +    
Sbjct:   622 SLGSI--LGISNLWNLRTLGLRDSRLL----LDM-SLVKELQLLEHLEVITLDISSSLVA 674

Query:   121 NRVKSSPKLQSCIKRLAV-VLMASFLLPLDL-RMDHLETLEIDRCSL-ESKNDYF-GDQG 176
               +  S +L  CIK +    L    +  L L  M +L  L I RC + E K +       
Sbjct:   675 EPLLCSQRLVECIKEVDFKYLKEESVRVLTLPTMGNLRKLGIKRCGMREIKIERTTSSSS 734

Query:   177 RTR---TYCFRNLRHLSVKTCPCMTDLKWIRYAPNLQFLYVSYCPRLSEIIGTYESPGTS 233
             R +   T CF NL  + +  C  + DL W+ +APNL FL V +   + +II   ++    
Sbjct:   735 RNKSPTTPCFSNLSRVFIAKCHGLKDLTWLLFAPNLTFLEVGFSKEVEDIISEEKA---E 791

Query:   234 EIEESQDFFSNLMVIDLRHLPSLTSICCGVVPFPSLQTISVNGCPSLRKLPLNSGS 289
             E   +   F  L  + L  L  L  I    + FP L+ I V  C  LRKLPL+S S
Sbjct:   792 EHSATIVPFRKLETLHLFELRGLKRIYAKALHFPCLKVIHVEKCEKLRKLPLDSKS 847

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0006952 "defense response" evidence=IMP;TAS

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0008219 "cell death" evidence=IMP

GO:0038023 "signaling receptor activity" evidence=IMP

GO:0000166 "nucleotide binding" evidence=IMP

GO:0005622 "intracellular" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	325
PLN03210	1153	PLN03210, PLN03210, Resistant to P	5e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	0.004

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 41.4 bits (97), Expect = 5e-04
 Identities = 63/271 (23%), Positives = 121/271 (44%), Gaps = 53/271 (19%)

Query: 27  NLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVP-CQVISSLSSLQVFSWFSTE 85
           NL  L +  +++ +L  G+  L  L+ + L G + L  +P   + ++L +L++     + 
Sbjct: 612 NLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSD--CSS 669

Query: 86  LVELHYVDSTSVLAELESL-----ENIHDI-------SVTLCNVDAVNRVKSSPKLQSCI 133
           LVEL    S   L +LE L     EN+  +       S+   N+   +R+KS P + + I
Sbjct: 670 LVELP--SSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDISTNI 727

Query: 134 KRLAVVLMASFLLPLDLRMDHLETLEIDRCSLESKNDYFGDQGRTRTYCFRNLRHLSVKT 193
             L +   A    P +LR+++L+ L +  C ++S+  +   Q  T               
Sbjct: 728 SWLDLDETAIEEFPSNLRLENLDELIL--CEMKSEKLWERVQPLT--------------- 770

Query: 194 CPCMTDLKWIRYAPNLQFLYVSYCPRLSEIIGTYESPGTSEIEESQDFFSNLMVIDLRHL 253
            P MT L     +P+L  L++S  P L E+  + ++               L  +++ + 
Sbjct: 771 -PLMTML-----SPSLTRLFLSDIPSLVELPSSIQN------------LHKLEHLEIENC 812

Query: 254 PSLTSICCGVVPFPSLQTISVNGCPSLRKLP 284
            +L ++  G +   SL+++ ++GC  LR  P
Sbjct: 813 INLETLPTG-INLESLESLDLSGCSRLRTFP 842

syringae 6; Provisional. Length = 1153

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 38.4 bits (89), Expect = 0.004
 Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 1/56 (1%)

Query: 3   ALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDG 58
           AL  LDLS N  +++L  ++  L NL  L LSN ++  LP  I  L NL+ L L  
Sbjct: 210 ALEELDLSNN-SIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSN 264

Length = 394

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	325
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.86
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.85
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.84
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.8
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.8
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.76
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.72
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.72
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.67
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.65
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.53
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.51
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.51
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.5
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.5
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.46
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.45
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.41
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.37
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.34
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.27
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.25
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.22
KOG4341	483	consensus F-box protein containing LRR [General fu	99.16
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.13
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.13
KOG4341	483	consensus F-box protein containing LRR [General fu	99.12
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.1
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.08
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.97
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.92
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.82
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.77
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.75
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.73
PLN03150	623	hypothetical protein; Provisional	98.64
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.61
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.61
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.59
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.57
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.48
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.44
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.39
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.36
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.35
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.34
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.29
KOG1947	482	consensus Leucine rich repeat proteins, some prote	98.27
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.27
PLN03150	623	hypothetical protein; Provisional	98.19
PRK15386	426	type III secretion protein GogB; Provisional	98.08
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.02
KOG1947	482	consensus Leucine rich repeat proteins, some prote	98.0
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.98
PRK15386	426	type III secretion protein GogB; Provisional	97.93
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.92
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.9
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.74
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.66
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.58
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.56
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.38
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.05
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	96.99
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	96.86
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.66
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.12
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.12
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.94
KOG3864	221	consensus Uncharacterized conserved protein [Funct	95.86
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	95.75
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.2
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	94.18
KOG3864	221	consensus Uncharacterized conserved protein [Funct	94.18
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	93.35
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	92.14
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	90.97
smart00370	26	LRR Leucine-rich repeats, outliers.	90.97
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	90.61
smart00370	26	LRR Leucine-rich repeats, outliers.	90.61
KOG0473	326	consensus Leucine-rich repeat protein [Function un	83.74

>PLN03210 Resistant to P

Probab=99.86  E-value=1e-20  Score=190.93  Aligned_cols=257  Identities=21%  Similarity=0.292  Sum_probs=150.7

Q ss_pred             CCcEEecCCCCCCCcCchhhhCcccCceecCCCC-cccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEe
Q 048462            3 ALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNT-RIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSW   81 (325)
Q Consensus         3 ~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~-~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l   81 (325)
                      +|+.|+++++ .+..++..+..+++|++|+++++ .++.+|. +..+++|++|++++|.....+|.. +.++++|+.|++
T Consensus       612 ~L~~L~L~~s-~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~s-i~~L~~L~~L~L  688 (1153)
T PLN03210        612 NLVKLQMQGS-KLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSS-IQYLNKLEDLDM  688 (1153)
T ss_pred             CCcEEECcCc-cccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchh-hhccCCCCEEeC
Confidence            4555555555 45555555555555555555554 2344443 455555666666555555555555 555566666666


Q ss_pred             cccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccccccCC--------
Q 048462           82 FSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPLDLRMD--------  153 (325)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~l~--------  153 (325)
                      .+|..       ...++..+ .+++|+.|.+.+|....  .   .+....+|+.|++++.....+|....++        
T Consensus       689 ~~c~~-------L~~Lp~~i-~l~sL~~L~Lsgc~~L~--~---~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~  755 (1153)
T PLN03210        689 SRCEN-------LEILPTGI-NLKSLYRLNLSGCSRLK--S---FPDISTNISWLDLDETAIEEFPSNLRLENLDELILC  755 (1153)
T ss_pred             CCCCC-------cCccCCcC-CCCCCCEEeCCCCCCcc--c---cccccCCcCeeecCCCcccccccccccccccccccc
Confidence            55543       12223222 34555555555543211  1   1111234555555544433344322233        


Q ss_pred             -----------------------CCCeEEEcCCCCceeccccCCCCCccc--cccccccEEEecCCCCCCccccccCCCC
Q 048462          154 -----------------------HLETLEIDRCSLESKNDYFGDQGRTRT--YCFRNLRHLSVKTCPCMTDLKWIRYAPN  208 (325)
Q Consensus       154 -----------------------~L~~L~l~~~~~~~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~l~~l~~~~~~~~  208 (325)
                                             +|+.|++++|...         ..+|.  ..+++|+.|++++|..++.+|....+++
T Consensus       756 ~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l---------~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~s  826 (1153)
T PLN03210        756 EMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSL---------VELPSSIQNLHKLEHLEIENCINLETLPTGINLES  826 (1153)
T ss_pred             ccchhhccccccccchhhhhccccchheeCCCCCCc---------cccChhhhCCCCCCEEECCCCCCcCeeCCCCCccc
Confidence                                   4444444444332         12232  5677888888888877877776657788


Q ss_pred             ccEEEEeccCCchhhcccCCCC--------CCCccccccccCCcccEEeccCCCCcceeccCcccCCCccEEeeeCCCCC
Q 048462          209 LQFLYVSYCPRLSEIIGTYESP--------GTSEIEESQDFFSNLMVIDLRHLPSLTSICCGVVPFPSLQTISVNGCPSL  280 (325)
Q Consensus       209 L~~L~l~~~~~l~~~~~~~~~~--------~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l  280 (325)
                      |+.|++++|..+..+.......        ....+|.++..+++|+.|++.+|+++..++.....+++|+.+++++|..|
T Consensus       827 L~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L  906 (1153)
T PLN03210        827 LESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGAL  906 (1153)
T ss_pred             cCEEECCCCCccccccccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccc
Confidence            8888888887665543211100        23456667788999999999999999988888778899999999999988


Q ss_pred             CCCC
Q 048462          281 RKLP  284 (325)
Q Consensus       281 ~~ip  284 (325)
                      +.++
T Consensus       907 ~~~~  910 (1153)
T PLN03210        907 TEAS  910 (1153)
T ss_pred             cccc
Confidence            8654

syringae 6; Provisional

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.85  E-value=8.7e-21  Score=190.35  Aligned_cols=196  Identities=23%  Similarity=0.300  Sum_probs=103.7

Q ss_pred             CCCcEEecCCCCCCC-cCchhhhCcccCceecCCCCcc-cccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEE
Q 048462            2 HALAVLDLSYNLDLV-KLPEAIGKLINLCYLNLSNTRI-GQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVF   79 (325)
Q Consensus         2 ~~L~~L~l~~~~~~~-~lp~~~~~l~~L~~L~l~~~~l-~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L   79 (325)
                      ++|++|++++| .+. .+|..++.+++|++|++++|.+ +.+|..+.++++|++|++++|...+.+|.. ++++++|++|
T Consensus       140 ~~L~~L~Ls~n-~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L  217 (968)
T PLN00113        140 PNLETLDLSNN-MLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRE-LGQMKSLKWI  217 (968)
T ss_pred             CCCCEEECcCC-cccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChH-HcCcCCccEE
Confidence            34555555555 333 4455566666666666666655 355556666666666666666555555555 6666666666


Q ss_pred             EecccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeee-cccc-cccCCCCCe
Q 048462           80 SWFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASF-LLPL-DLRMDHLET  157 (325)
Q Consensus        80 ~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~l~~-l~~l~~L~~  157 (325)
                      ++.+|.+       ....+..+..+++|++|++.+|...+..  ........+|+.|+++++... .+|. +..+++|++
T Consensus       218 ~L~~n~l-------~~~~p~~l~~l~~L~~L~L~~n~l~~~~--p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  288 (968)
T PLN00113        218 YLGYNNL-------SGEIPYEIGGLTSLNHLDLVYNNLTGPI--PSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLIS  288 (968)
T ss_pred             ECcCCcc-------CCcCChhHhcCCCCCEEECcCceecccc--ChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCE
Confidence            6666655       3445555666666666666665543210  001111224566666544332 2333 555666666


Q ss_pred             EEEcCCCCceeccccCCCCCccc--cccccccEEEecCCCCCCc-c-ccccCCCCccEEEEeccC
Q 048462          158 LEIDRCSLESKNDYFGDQGRTRT--YCFRNLRHLSVKTCPCMTD-L-KWIRYAPNLQFLYVSYCP  218 (325)
Q Consensus       158 L~l~~~~~~~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~l~~-l-~~~~~~~~L~~L~l~~~~  218 (325)
                      |++++|...         +.+|.  ..+++|++|+++++ .+.. + ..+..+++|+.|++++|.
T Consensus       289 L~Ls~n~l~---------~~~p~~~~~l~~L~~L~l~~n-~~~~~~~~~~~~l~~L~~L~L~~n~  343 (968)
T PLN00113        289 LDLSDNSLS---------GEIPELVIQLQNLEILHLFSN-NFTGKIPVALTSLPRLQVLQLWSNK  343 (968)
T ss_pred             EECcCCeec---------cCCChhHcCCCCCcEEECCCC-ccCCcCChhHhcCCCCCEEECcCCC
Confidence            666655432         11221  34556666666655 3332 2 124455666666666554

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.84  E-value=1.6e-20  Score=188.46  Aligned_cols=266  Identities=19%  Similarity=0.217  Sum_probs=191.7

Q ss_pred             CCCCcEEecCCCCCCCcCchhhhCcccCceecCCCCcc-cccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEE
Q 048462            1 MHALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRI-GQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVF   79 (325)
Q Consensus         1 ~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l-~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L   79 (325)
                      +++|++|++++|...+.+|..++++++|++|++++|.+ +.+|..+.++++|++|++++|...+.+|.. ++++++|++|
T Consensus       163 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L  241 (968)
T PLN00113        163 FSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNHL  241 (968)
T ss_pred             CCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChh-HhcCCCCCEE
Confidence            47899999999944457799999999999999999987 478999999999999999999888888988 9999999999


Q ss_pred             EecccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeee-cccc-cccCCCCCe
Q 048462           80 SWFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASF-LLPL-DLRMDHLET  157 (325)
Q Consensus        80 ~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~l~~-l~~l~~L~~  157 (325)
                      ++++|.+       ....+..+..+++|+.|++.+|...+..  ........+|+.|+++++... .+|. +..+++|+.
T Consensus       242 ~L~~n~l-------~~~~p~~l~~l~~L~~L~L~~n~l~~~~--p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  312 (968)
T PLN00113        242 DLVYNNL-------TGPIPSSLGNLKNLQYLFLYQNKLSGPI--PPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEI  312 (968)
T ss_pred             ECcCcee-------ccccChhHhCCCCCCEEECcCCeeeccC--chhHhhccCcCEEECcCCeeccCCChhHcCCCCCcE
Confidence            9999987       5677888999999999999988765321  111112245888999866543 4455 778899999


Q ss_pred             EEEcCCCCceeccccCCCCCccc--cccccccEEEecCCCCCC-ccc-cccCCCCccEEEEeccCCchhhccc-------
Q 048462          158 LEIDRCSLESKNDYFGDQGRTRT--YCFRNLRHLSVKTCPCMT-DLK-WIRYAPNLQFLYVSYCPRLSEIIGT-------  226 (325)
Q Consensus       158 L~l~~~~~~~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~l~-~l~-~~~~~~~L~~L~l~~~~~l~~~~~~-------  226 (325)
                      |++++|...         +..|.  ..+++|+.|++++| .+. .++ .++.+++|+.|++++|.....+...       
T Consensus       313 L~l~~n~~~---------~~~~~~~~~l~~L~~L~L~~n-~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L  382 (968)
T PLN00113        313 LHLFSNNFT---------GKIPVALTSLPRLQVLQLWSN-KFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNL  382 (968)
T ss_pred             EECCCCccC---------CcCChhHhcCCCCCEEECcCC-CCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCC
Confidence            999888763         22222  45778888888888 444 333 4566778888888777543222110       


Q ss_pred             ------CCCCCCCccccccccCCcccEEeccCCCCcceeccCcccCCCccEEeeeCCCCCCCCCCCC
Q 048462          227 ------YESPGTSEIEESQDFFSNLMVIDLRHLPSLTSICCGVVPFPSLQTISVNGCPSLRKLPLNS  287 (325)
Q Consensus       227 ------~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~ip~~~  287 (325)
                            .+. -...++..+..+++|+.|++.+|.-...++.....+++|+.+++++|.--..+|...
T Consensus       383 ~~L~l~~n~-l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~  448 (968)
T PLN00113        383 FKLILFSNS-LEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRK  448 (968)
T ss_pred             CEEECcCCE-ecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhh
Confidence                  000 112334556678888888888875444555556668888888888774333445433

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.80  E-value=1.1e-21  Score=175.58  Aligned_cols=281  Identities=17%  Similarity=0.200  Sum_probs=174.5

Q ss_pred             CCCCcEEecCCCCCCC--cCchhhhCcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccE
Q 048462            1 MHALAVLDLSYNLDLV--KLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQV   78 (325)
Q Consensus         1 ~~~L~~L~l~~~~~~~--~lp~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~   78 (325)
                      ++.||.++++.| .++  .+|+.+..+..|..|+++.|++++.|.++.+.+++-.|++++| .+..+|..++.++..|-.
T Consensus        77 Lp~LRsv~~R~N-~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N-~IetIPn~lfinLtDLLf  154 (1255)
T KOG0444|consen   77 LPRLRSVIVRDN-NLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYN-NIETIPNSLFINLTDLLF  154 (1255)
T ss_pred             chhhHHHhhhcc-ccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccC-ccccCCchHHHhhHhHhh
Confidence            466788888887 555  6788888888888888888888888888888888888888884 445567665777888888


Q ss_pred             EEecccceeeeeeccCccchhhhccCCCcceEEEEecCcccc--cccccCccccCCceEEEEceeee--ecccc-cccCC
Q 048462           79 FSWFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAV--NRVKSSPKLQSCIKRLAVVLMAS--FLLPL-DLRMD  153 (325)
Q Consensus        79 L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~--~~l~~-l~~l~  153 (325)
                      |++++|++        +..|..+..+.+|+.|.+++|....+  ..++.+.    +|+.|.+++.+.  ..+|. +..+.
T Consensus       155 LDLS~NrL--------e~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmt----sL~vLhms~TqRTl~N~Ptsld~l~  222 (1255)
T KOG0444|consen  155 LDLSNNRL--------EMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMT----SLSVLHMSNTQRTLDNIPTSLDDLH  222 (1255)
T ss_pred             hccccchh--------hhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccch----hhhhhhcccccchhhcCCCchhhhh
Confidence            88888876        56677777777777777777765432  2222211    245555553322  13333 44444


Q ss_pred             CCCeEEEc-----------------------CCCCceeccccCCCCCccccccccccEEEecCCCCCCccc-cccCCCCc
Q 048462          154 HLETLEID-----------------------RCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDLK-WIRYAPNL  209 (325)
Q Consensus       154 ~L~~L~l~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~~~~~~~L  209 (325)
                      ||..++++                       +|...+...        ......+|+.|+++++ .++.+| .+..++.|
T Consensus       223 NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~--------~~~~W~~lEtLNlSrN-QLt~LP~avcKL~kL  293 (1255)
T KOG0444|consen  223 NLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNM--------TEGEWENLETLNLSRN-QLTVLPDAVCKLTKL  293 (1255)
T ss_pred             hhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeec--------cHHHHhhhhhhccccc-hhccchHHHhhhHHH
Confidence            55555544                       444332111        1123345555555555 444443 23445555


Q ss_pred             cEEEEeccCCchhhcccCCCCCCCccccccccCCcccEEeccCCCCcceeccCcccCCCccEEeeeCCCCCCCCCCCCCC
Q 048462          210 QFLYVSYCPRLSEIIGTYESPGTSEIEESQDFFSNLMVIDLRHLPSLTSICCGVVPFPSLQTISVNGCPSLRKLPLNSGS  289 (325)
Q Consensus       210 ~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~ip~~~~~  289 (325)
                      +.|.+.+|+.           ...++|+.++.+.+|+.+...++ .+.-+|.+.+.|++|+.|.+. |+++-.+|+.+-.
T Consensus       294 ~kLy~n~NkL-----------~FeGiPSGIGKL~~Levf~aanN-~LElVPEglcRC~kL~kL~L~-~NrLiTLPeaIHl  360 (1255)
T KOG0444|consen  294 TKLYANNNKL-----------TFEGIPSGIGKLIQLEVFHAANN-KLELVPEGLCRCVKLQKLKLD-HNRLITLPEAIHL  360 (1255)
T ss_pred             HHHHhccCcc-----------cccCCccchhhhhhhHHHHhhcc-ccccCchhhhhhHHHHHhccc-ccceeechhhhhh
Confidence            5555554432           55677788888888888888775 777778888788888888884 4566667777654


Q ss_pred             cccceeE--EechHHHHhhcccCCccccccc
Q 048462          290 AKNSLNA--IRGSREWWDRLEWEDEDTRNVF  318 (325)
Q Consensus       290 ~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~  318 (325)
                      + +.+..  ++.+++....++..+..++.-|
T Consensus       361 L-~~l~vLDlreNpnLVMPPKP~da~~~lef  390 (1255)
T KOG0444|consen  361 L-PDLKVLDLRENPNLVMPPKPNDARKKLEF  390 (1255)
T ss_pred             c-CCcceeeccCCcCccCCCCcchhhhccee
Confidence            4 33333  3444444444444444444333

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.80  E-value=5.5e-20  Score=177.88  Aligned_cols=308  Identities=31%  Similarity=0.455  Sum_probs=217.2

Q ss_pred             CCCCcEEecCCCCCCCcCchhhhCcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEE
Q 048462            1 MHALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFS   80 (325)
Q Consensus         1 ~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~   80 (325)
                      ||.|++||+++|...+.+|+.++.+.+||||+++++.+..+|.+++++.+|.+|++..+......|.. ...+.+|++|.
T Consensus       570 m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i-~~~L~~Lr~L~  648 (889)
T KOG4658|consen  570 LPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGI-LLELQSLRVLR  648 (889)
T ss_pred             CcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccch-hhhcccccEEE
Confidence            68999999999988899999999999999999999999999999999999999999987766666654 66699999999


Q ss_pred             ecccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeee-cccccccCCCCCeEE
Q 048462           81 WFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASF-LLPLDLRMDHLETLE  159 (325)
Q Consensus        81 l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~l~~l~~l~~L~~L~  159 (325)
                      +.....     ..+.....++..+++|+.+.+..........+.....+....+.+.+.++... ..+.+..+++|+.|.
T Consensus       649 l~~s~~-----~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~  723 (889)
T KOG4658|consen  649 LPRSAL-----SNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELS  723 (889)
T ss_pred             eecccc-----ccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEE
Confidence            998652     22455677778888888888866554222333223333223334443332322 344488899999999


Q ss_pred             EcCCCCceeccccCCCCCcccc-ccccccEEEecCCCCCCccccccCCCCccEEEEeccCCchhhcccCCCCCCCccccc
Q 048462          160 IDRCSLESKNDYFGDQGRTRTY-CFRNLRHLSVKTCPCMTDLKWIRYAPNLQFLYVSYCPRLSEIIGTYESPGTSEIEES  238 (325)
Q Consensus       160 l~~~~~~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~  238 (325)
                      +.+|...+.......  ..... .|+++..+.+.+|....++.+....|+|++|.+.+|..++++.+........  ...
T Consensus       724 i~~~~~~e~~~~~~~--~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l--~~~  799 (889)
T KOG4658|consen  724 ILDCGISEIVIEWEE--SLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLEL--KEL  799 (889)
T ss_pred             EEcCCCchhhccccc--ccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCCCHHHHhhhc--ccE
Confidence            999998643321111  11112 2667888888899888888888889999999999999998887532211000  011


Q ss_pred             cccCCcccEE-eccCCCCcceeccCcccCCCccEEeeeCCCCCCCCCCCCCCcc-c--ceeEEechHHHHhhcccCCccc
Q 048462          239 QDFFSNLMVI-DLRHLPSLTSICCGVVPFPSLQTISVNGCPSLRKLPLNSGSAK-N--SLNAIRGSREWWDRLEWEDEDT  314 (325)
Q Consensus       239 ~~~~~~L~~L-~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~ip~~~~~~~-~--~l~~~~~~~~~~~~~~~~~~~~  314 (325)
                      .-.|.++..+ .+.+.+.+..+-.....++.|+.+.+..||+++.+|....... .  ......-+..|.+.++|.++++
T Consensus       800 i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~~P~~~~~~i~~~~~~~~~~~~~~~~~~v~~~~~~~  879 (889)
T KOG4658|consen  800 ILPFNKLEGLRMLCSLGGLPQLYWLPLSFLKLEELIVEECPKLGKLPLLSTLTIVGCEEKLKEYPDGEWLEGVYWEDELT  879 (889)
T ss_pred             EecccccccceeeecCCCCceeEecccCccchhheehhcCcccccCccccccceeccccceeecCCccceeeEEehhhhh
Confidence            2334555555 3555555555555555677799999999999999997755444 1  2334444445688999999998


Q ss_pred             cccc
Q 048462          315 RNVF  318 (325)
Q Consensus       315 ~~~~  318 (325)
                      +..+
T Consensus       880 ~~~~  883 (889)
T KOG4658|consen  880 KLRF  883 (889)
T ss_pred             hhhc
Confidence            8776

>PLN03210 Resistant to P

Probab=99.76  E-value=1.2e-17  Score=168.97  Aligned_cols=243  Identities=20%  Similarity=0.311  Sum_probs=154.7

Q ss_pred             CCcEEecCCCCCCCcCchhhhCcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEec
Q 048462            3 ALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWF   82 (325)
Q Consensus         3 ~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~   82 (325)
                      +|+.|.+.++ .++.+|..+ ...+|+.|++.++.++.+|.++..+++|+.|+++++.....+|.  ++.+++|+.|++.
T Consensus       590 ~Lr~L~~~~~-~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~  665 (1153)
T PLN03210        590 KLRLLRWDKY-PLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLS  665 (1153)
T ss_pred             ccEEEEecCC-CCCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEec
Confidence            4677777777 677777666 46788888888888888888888888888888888777777775  7788888888888


Q ss_pred             ccceeeeeeccCccchhhhccCCCcceEEEEecCcc-cccccccCccccCCceEEEEceeeee-cccccccCCCCCeEEE
Q 048462           83 STELVELHYVDSTSVLAELESLENIHDISVTLCNVD-AVNRVKSSPKLQSCIKRLAVVLMASF-LLPLDLRMDHLETLEI  160 (325)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~-~l~~l~~l~~L~~L~l  160 (325)
                      +|..       ....+..+..+++|+.|++.+|... .++...    ...+|+.|++++|... .+|.  ...+|+.|++
T Consensus       666 ~c~~-------L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i----~l~sL~~L~Lsgc~~L~~~p~--~~~nL~~L~L  732 (1153)
T PLN03210        666 DCSS-------LVELPSSIQYLNKLEDLDMSRCENLEILPTGI----NLKSLYRLNLSGCSRLKSFPD--ISTNISWLDL  732 (1153)
T ss_pred             CCCC-------ccccchhhhccCCCCEEeCCCCCCcCccCCcC----CCCCCCEEeCCCCCCcccccc--ccCCcCeeec
Confidence            8765       4566777888888888888877432 222211    2345788888876543 2332  2457888888


Q ss_pred             cCCCCceeccccCCCCCccccccccccEEEecCCCCCCcc-------cc--ccCCCCccEEEEeccCCchhhcccCCCCC
Q 048462          161 DRCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDL-------KW--IRYAPNLQFLYVSYCPRLSEIIGTYESPG  231 (325)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-------~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~  231 (325)
                      .++...+.+      ..   ..+++|++|++.++. ...+       ..  ....++|+.|++++|+.+..++       
T Consensus       733 ~~n~i~~lP------~~---~~l~~L~~L~l~~~~-~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP-------  795 (1153)
T PLN03210        733 DETAIEEFP------SN---LRLENLDELILCEMK-SEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELP-------  795 (1153)
T ss_pred             CCCcccccc------cc---ccccccccccccccc-hhhccccccccchhhhhccccchheeCCCCCCccccC-------
Confidence            877743211      11   234555555555431 1110       00  1123456666666665444332       


Q ss_pred             CCccccccccCCcccEEeccCCCCcceeccCcccCCCccEEeeeCCCCCCCCCC
Q 048462          232 TSEIEESQDFFSNLMVIDLRHLPSLTSICCGVVPFPSLQTISVNGCPSLRKLPL  285 (325)
Q Consensus       232 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~ip~  285 (325)
                           ..++.+++|+.|++.+|..+..+|... .+++|+.|++++|..++.+|.
T Consensus       796 -----~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~  843 (1153)
T PLN03210        796 -----SSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD  843 (1153)
T ss_pred             -----hhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc
Confidence                 355666666777776666666665543 456666666666666665554

syringae 6; Provisional

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.72  E-value=7.7e-18  Score=149.91  Aligned_cols=250  Identities=17%  Similarity=0.146  Sum_probs=181.6

Q ss_pred             CcEEecCCCCCCCcC-chhhhCcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEec
Q 048462            4 LAVLDLSYNLDLVKL-PEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWF   82 (325)
Q Consensus         4 L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~   82 (325)
                      -+.||+++| .+..+ +..|-++++|+.+++..|.++.+|....-..+|+.|++.+|.+......+ ++.++.|+.||++
T Consensus        80 t~~LdlsnN-kl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~-L~~l~alrslDLS  157 (873)
T KOG4194|consen   80 TQTLDLSNN-KLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEE-LSALPALRSLDLS  157 (873)
T ss_pred             eeeeecccc-ccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHH-HHhHhhhhhhhhh
Confidence            467999999 77766 67788999999999999999999998778888999999996555544455 8999999999999


Q ss_pred             ccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccc--cccCCCCCeEEE
Q 048462           83 STELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPL--DLRMDHLETLEI  160 (325)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~--l~~l~~L~~L~l  160 (325)
                      .|.+       +..-...+..-.++++|++++|.++.+..... .++ .+|-.|.++..+...+|.  +..+++|+.|++
T Consensus       158 rN~i-------s~i~~~sfp~~~ni~~L~La~N~It~l~~~~F-~~l-nsL~tlkLsrNrittLp~r~Fk~L~~L~~LdL  228 (873)
T KOG4194|consen  158 RNLI-------SEIPKPSFPAKVNIKKLNLASNRITTLETGHF-DSL-NSLLTLKLSRNRITTLPQRSFKRLPKLESLDL  228 (873)
T ss_pred             hchh-------hcccCCCCCCCCCceEEeeccccccccccccc-ccc-chheeeecccCcccccCHHHhhhcchhhhhhc
Confidence            9987       33334455566789999999999887643321 122 258888999877777777  888999999999


Q ss_pred             cCCCCceeccccCCCCCccccccccccEEEecCCCCCCccc--cccCCCCccEEEEeccCCchhhcccCCCCCCCccccc
Q 048462          161 DRCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDLK--WIRYAPNLQFLYVSYCPRLSEIIGTYESPGTSEIEES  238 (325)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~--~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~  238 (325)
                      ..|..-...       +.-...+++|+.|.+..+ ++..+.  .+..+.++++|+|+.|. ++.+..           .+
T Consensus       229 nrN~irive-------~ltFqgL~Sl~nlklqrN-~I~kL~DG~Fy~l~kme~l~L~~N~-l~~vn~-----------g~  288 (873)
T KOG4194|consen  229 NRNRIRIVE-------GLTFQGLPSLQNLKLQRN-DISKLDDGAFYGLEKMEHLNLETNR-LQAVNE-----------GW  288 (873)
T ss_pred             cccceeeeh-------hhhhcCchhhhhhhhhhc-CcccccCcceeeecccceeecccch-hhhhhc-----------cc
Confidence            998864221       111145778888888877 566553  34457788888888775 333332           26


Q ss_pred             cccCCcccEEeccCCCCccee-ccCcccCCCccEEeeeCCCCCCCCCCC
Q 048462          239 QDFFSNLMVIDLRHLPSLTSI-CCGVVPFPSLQTISVNGCPSLRKLPLN  286 (325)
Q Consensus       239 ~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~l~~c~~l~~ip~~  286 (325)
                      +-++.+|+.|+++.+ .+..+ +....-+++|+.|+++.+ +|++++++
T Consensus       289 lfgLt~L~~L~lS~N-aI~rih~d~WsftqkL~~LdLs~N-~i~~l~~~  335 (873)
T KOG4194|consen  289 LFGLTSLEQLDLSYN-AIQRIHIDSWSFTQKLKELDLSSN-RITRLDEG  335 (873)
T ss_pred             ccccchhhhhccchh-hhheeecchhhhcccceeEecccc-ccccCChh
Confidence            667788888888876 33333 222333678888888765 77777654

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.72  E-value=8.4e-19  Score=155.95  Aligned_cols=246  Identities=17%  Similarity=0.160  Sum_probs=111.2

Q ss_pred             CCcEEecCCCCCCCcCc-hhhhCcccCceecCCCCcccccCh-hhhccccCceeeccCCCCCeeechhhhhCCCcccEEE
Q 048462            3 ALAVLDLSYNLDLVKLP-EAIGKLINLCYLNLSNTRIGQLPT-GITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFS   80 (325)
Q Consensus         3 ~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~   80 (325)
                      .||+||||.| .+..+| ..+..=.+|++|++++|.++.+-. .+..+.+|.+|.++.|.+ +.+|..+|+++++|+.|+
T Consensus       150 alrslDLSrN-~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNri-ttLp~r~Fk~L~~L~~Ld  227 (873)
T KOG4194|consen  150 ALRSLDLSRN-LISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRI-TTLPQRSFKRLPKLESLD  227 (873)
T ss_pred             hhhhhhhhhc-hhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcc-cccCHHHhhhcchhhhhh
Confidence            4455555555 444443 223333455555555555543322 234455555666665333 334433366666666666


Q ss_pred             ecccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeee--cccccccCCCCCeE
Q 048462           81 WFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASF--LLPLDLRMDHLETL  158 (325)
Q Consensus        81 l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~l~~l~~l~~L~~L  158 (325)
                      +..|.+       ...-...+..++.|+.|.+..|.+....+.+.  --+..+++|++...+..  .-.++-++..|+.|
T Consensus       228 LnrN~i-------rive~ltFqgL~Sl~nlklqrN~I~kL~DG~F--y~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L  298 (873)
T KOG4194|consen  228 LNRNRI-------RIVEGLTFQGLPSLQNLKLQRNDISKLDDGAF--YGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQL  298 (873)
T ss_pred             ccccce-------eeehhhhhcCchhhhhhhhhhcCcccccCcce--eeecccceeecccchhhhhhcccccccchhhhh
Confidence            666665       11112334444444444444444333222110  00112344444422111  11113344444555


Q ss_pred             EEcCCCCceeccccCCCCCccccccccccEEEecCCCCCCccc--------------------------cccCCCCccEE
Q 048462          159 EIDRCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDLK--------------------------WIRYAPNLQFL  212 (325)
Q Consensus       159 ~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~--------------------------~~~~~~~L~~L  212 (325)
                      ++++|....+..    ++|   ..+++|+.|+++++ .++.++                          .+..+++|+.|
T Consensus       299 ~lS~NaI~rih~----d~W---sftqkL~~LdLs~N-~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~L  370 (873)
T KOG4194|consen  299 DLSYNAIQRIHI----DSW---SFTQKLKELDLSSN-RITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKL  370 (873)
T ss_pred             ccchhhhheeec----chh---hhcccceeEecccc-ccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhh
Confidence            554444321111    122   12344555555444 444432                          22334555666


Q ss_pred             EEeccCCchhhcccCCCCCCCccccccccCCcccEEeccCCCCcceeccC-cccCCCccEEeeeCC
Q 048462          213 YVSYCPRLSEIIGTYESPGTSEIEESQDFFSNLMVIDLRHLPSLTSICCG-VVPFPSLQTISVNGC  277 (325)
Q Consensus       213 ~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~l~~c  277 (325)
                      +|++|..--.+         ++....+..+++|+.|++.|+ +++.++-. ...++.|+.|++.++
T Consensus       371 dLr~N~ls~~I---------EDaa~~f~gl~~LrkL~l~gN-qlk~I~krAfsgl~~LE~LdL~~N  426 (873)
T KOG4194|consen  371 DLRSNELSWCI---------EDAAVAFNGLPSLRKLRLTGN-QLKSIPKRAFSGLEALEHLDLGDN  426 (873)
T ss_pred             cCcCCeEEEEE---------ecchhhhccchhhhheeecCc-eeeecchhhhccCcccceecCCCC
Confidence            65555421111         111224455777777777775 66666543 223677777777655

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.67  E-value=2.1e-19  Score=153.24  Aligned_cols=250  Identities=24%  Similarity=0.273  Sum_probs=205.2

Q ss_pred             CCcEEecCCCCCCCcCchhhhCcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEec
Q 048462            3 ALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWF   82 (325)
Q Consensus         3 ~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~   82 (325)
                      .++.++++.| .+..+.+.+.++..|.+++++.+++.++|++++.+..++.+++++ +....+|.+ +..+.+|.+++.+
T Consensus        46 ~l~~lils~N-~l~~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~-n~ls~lp~~-i~s~~~l~~l~~s  122 (565)
T KOG0472|consen   46 DLQKLILSHN-DLEVLREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSH-NKLSELPEQ-IGSLISLVKLDCS  122 (565)
T ss_pred             chhhhhhccC-chhhccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhccc-chHhhccHH-Hhhhhhhhhhhcc
Confidence            3677889999 788888889999999999999999999999999999999999999 556678888 9999999999999


Q ss_pred             ccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccc-cccCCCCCeEEEc
Q 048462           83 STELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPL-DLRMDHLETLEID  161 (325)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~-l~~l~~L~~L~l~  161 (325)
                      .+..        ...+.+++.+..|+.++..+|++.+.++-...   +..+..+++.+.....+|. .-.++.|++++..
T Consensus       123 ~n~~--------~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~---~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~  191 (565)
T KOG0472|consen  123 SNEL--------KELPDSIGRLLDLEDLDATNNQISSLPEDMVN---LSKLSKLDLEGNKLKALPENHIAMKRLKHLDCN  191 (565)
T ss_pred             ccce--------eecCchHHHHhhhhhhhccccccccCchHHHH---HHHHHHhhccccchhhCCHHHHHHHHHHhcccc
Confidence            9887        57788888899999999998887776543321   2235667777666666666 4458999999988


Q ss_pred             CCCCceeccccCCCCCccc--cccccccEEEecCCCCCCccccccCCCCccEEEEeccCCchhhcccCCCCCCCcccccc
Q 048462          162 RCSLESKNDYFGDQGRTRT--YCFRNLRHLSVKTCPCMTDLKWIRYAPNLQFLYVSYCPRLSEIIGTYESPGTSEIEESQ  239 (325)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~  239 (325)
                      .|..          +.+|.  +.+.+|+.|++.++ ++..+|.+..+..|+.+++..+. ++.+..           +..
T Consensus       192 ~N~L----------~tlP~~lg~l~~L~~LyL~~N-ki~~lPef~gcs~L~Elh~g~N~-i~~lpa-----------e~~  248 (565)
T KOG0472|consen  192 SNLL----------ETLPPELGGLESLELLYLRRN-KIRFLPEFPGCSLLKELHVGENQ-IEMLPA-----------EHL  248 (565)
T ss_pred             hhhh----------hcCChhhcchhhhHHHHhhhc-ccccCCCCCccHHHHHHHhcccH-HHhhHH-----------HHh
Confidence            7774          34444  77899999999999 89999999999999999998875 333332           234


Q ss_pred             ccCCcccEEeccCCCCcceeccCcccCCCccEEeeeCCCCCCCCCCCCCCcc
Q 048462          240 DFFSNLMVIDLRHLPSLTSICCGVVPFPSLQTISVNGCPSLRKLPLNSGSAK  291 (325)
Q Consensus       240 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~ip~~~~~~~  291 (325)
                      .+++++..||++.+ +++++|++.+-+.+|++||++++ .|+.+|..++.+.
T Consensus       249 ~~L~~l~vLDLRdN-klke~Pde~clLrsL~rLDlSNN-~is~Lp~sLgnlh  298 (565)
T KOG0472|consen  249 KHLNSLLVLDLRDN-KLKEVPDEICLLRSLERLDLSNN-DISSLPYSLGNLH  298 (565)
T ss_pred             cccccceeeecccc-ccccCchHHHHhhhhhhhcccCC-ccccCCcccccce
Confidence            58999999999996 99999999999999999999876 9999999988774

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.65  E-value=3.4e-18  Score=153.45  Aligned_cols=111  Identities=16%  Similarity=0.301  Sum_probs=72.4

Q ss_pred             CCCCcEEecCCCCCCC-cCchhhhCcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEE
Q 048462            1 MHALAVLDLSYNLDLV-KLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVF   79 (325)
Q Consensus         1 ~~~L~~L~l~~~~~~~-~lp~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L   79 (325)
                      +|.+|-+|+++|...+ ..|..+..|..++.|.+..+++..+|..++.+.+|++|.+++|+... +..+ ++.++.|+.+
T Consensus         6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~-vhGE-Ls~Lp~LRsv   83 (1255)
T KOG0444|consen    6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLIS-VHGE-LSDLPRLRSV   83 (1255)
T ss_pred             cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHh-hhhh-hccchhhHHH
Confidence            3566778888883332 56888888888888888888888888888888888888777754433 2333 5566666666


Q ss_pred             EecccceeeeeeccCccchhhhccCCCcceEEEEecCccc
Q 048462           80 SWFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDA  119 (325)
Q Consensus        80 ~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  119 (325)
                      .+..|.+      +...+|..+..+..|..|+++.|+...
T Consensus        84 ~~R~N~L------KnsGiP~diF~l~dLt~lDLShNqL~E  117 (1255)
T KOG0444|consen   84 IVRDNNL------KNSGIPTDIFRLKDLTILDLSHNQLRE  117 (1255)
T ss_pred             hhhcccc------ccCCCCchhcccccceeeecchhhhhh
Confidence            6666554      244455555556666666665555443

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.53  E-value=6e-17  Score=138.37  Aligned_cols=237  Identities=22%  Similarity=0.252  Sum_probs=172.9

Q ss_pred             CCCcEEecCCCCCCCcCchhhhCcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEe
Q 048462            2 HALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSW   81 (325)
Q Consensus         2 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l   81 (325)
                      ..|.+|++.++ ....+|++++.+..+..++.+.+++.++|+.++.+.+|.+++.+++.. ..++.. ++.+..|+.++.
T Consensus        68 ~~l~vl~~~~n-~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~-~el~~~-i~~~~~l~dl~~  144 (565)
T KOG0472|consen   68 ACLTVLNVHDN-KLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNEL-KELPDS-IGRLLDLEDLDA  144 (565)
T ss_pred             cceeEEEeccc-hhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccce-eecCch-HHHHhhhhhhhc
Confidence            45788999999 788999999999999999999999999999999999999999999554 455666 899999999999


Q ss_pred             cccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccc-cccCCCCCeEEE
Q 048462           82 FSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPL-DLRMDHLETLEI  160 (325)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~-l~~l~~L~~L~l  160 (325)
                      .+|.+        ...+.++..+.+|..+.+.++.....+.-...   ++.|++++....--..+|. ++.+.+|..|++
T Consensus       145 ~~N~i--------~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~---m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL  213 (565)
T KOG0472|consen  145 TNNQI--------SSLPEDMVNLSKLSKLDLEGNKLKALPENHIA---MKRLKHLDCNSNLLETLPPELGGLESLELLYL  213 (565)
T ss_pred             ccccc--------ccCchHHHHHHHHHHhhccccchhhCCHHHHH---HHHHHhcccchhhhhcCChhhcchhhhHHHHh
Confidence            99887        56788888888888888888876655433222   2346777665433446666 888888888888


Q ss_pred             cCCCCceeccccCCCCCccc-cccccccEEEecCCCCCCcccc--ccCCCCccEEEEeccCCchhhcccCCCCCCCcccc
Q 048462          161 DRCSLESKNDYFGDQGRTRT-YCFRNLRHLSVKTCPCMTDLKW--IRYAPNLQFLYVSYCPRLSEIIGTYESPGTSEIEE  237 (325)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~l~~l~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~  237 (325)
                      +.|...          ++|. ..|+.|.++++..+ .++-++.  ..+++++..|++.+++ ++++            |.
T Consensus       214 ~~Nki~----------~lPef~gcs~L~Elh~g~N-~i~~lpae~~~~L~~l~vLDLRdNk-lke~------------Pd  269 (565)
T KOG0472|consen  214 RRNKIR----------FLPEFPGCSLLKELHVGEN-QIEMLPAEHLKHLNSLLVLDLRDNK-LKEV------------PD  269 (565)
T ss_pred             hhcccc----------cCCCCCccHHHHHHHhccc-HHHhhHHHHhcccccceeeeccccc-cccC------------ch
Confidence            888754          2333 45667777777666 5555442  3357777777777775 3333            33


Q ss_pred             ccccCCcccEEeccCCCCcceeccCcccCCCccEEeeeCCC
Q 048462          238 SQDFFSNLMVIDLRHLPSLTSICCGVVPFPSLQTISVNGCP  278 (325)
Q Consensus       238 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~  278 (325)
                      .+.-+.+|+.||++++ .++.++...+.+ .|+.|.+.|+|
T Consensus       270 e~clLrsL~rLDlSNN-~is~Lp~sLgnl-hL~~L~leGNP  308 (565)
T KOG0472|consen  270 EICLLRSLERLDLSNN-DISSLPYSLGNL-HLKFLALEGNP  308 (565)
T ss_pred             HHHHhhhhhhhcccCC-ccccCCcccccc-eeeehhhcCCc
Confidence            5566677777777775 667777776666 67777766653

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.51  E-value=4.4e-16  Score=145.35  Aligned_cols=82  Identities=34%  Similarity=0.423  Sum_probs=63.2

Q ss_pred             CCCcEEecCCCCCCCcCchhhhCcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEe
Q 048462            2 HALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSW   81 (325)
Q Consensus         2 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l   81 (325)
                      .+|++++++.+ .+..+|+.++.|.+|+.++...|.+.++|..+..+.+|+.|.+..| ....+|.. ....+.|++|++
T Consensus       241 ~nl~~~dis~n-~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~n-el~yip~~-le~~~sL~tLdL  317 (1081)
T KOG0618|consen  241 LNLQYLDISHN-NLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYN-ELEYIPPF-LEGLKSLRTLDL  317 (1081)
T ss_pred             ccceeeecchh-hhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhh-hhhhCCCc-ccccceeeeeee
Confidence            35778888888 7778887788888888888888888888888888888888888774 45566665 666888888888


Q ss_pred             cccce
Q 048462           82 FSTEL   86 (325)
Q Consensus        82 ~~~~~   86 (325)
                      ..|.+
T Consensus       318 ~~N~L  322 (1081)
T KOG0618|consen  318 QSNNL  322 (1081)
T ss_pred             hhccc
Confidence            88776

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.51  E-value=4.2e-14  Score=135.31  Aligned_cols=229  Identities=19%  Similarity=0.243  Sum_probs=133.9

Q ss_pred             CCcEEecCCCCCCCcCchhhhCcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEec
Q 048462            3 ALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWF   82 (325)
Q Consensus         3 ~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~   82 (325)
                      +...|+++++ .++.+|..+.  .+|+.|++++|+++.+|..+.  .+|++|++++|. ...+|.. +.  .+|+.|+++
T Consensus       179 ~~~~L~L~~~-~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~-LtsLP~~-l~--~~L~~L~Ls  249 (754)
T PRK15370        179 NKTELRLKIL-GLTTIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQ-LTSIPAT-LP--DTIQEMELS  249 (754)
T ss_pred             CceEEEeCCC-CcCcCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCc-cccCChh-hh--ccccEEECc
Confidence            4567777777 6777776553  467788888887777776553  478888887754 3456654 32  367778888


Q ss_pred             ccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccccccCCCCCeEEEcC
Q 048462           83 STELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPLDLRMDHLETLEIDR  162 (325)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~l~~L~~L~l~~  162 (325)
                      +|.+        ..++..+.  .+|+.|++++|....++..     .+.+|+.|+++++....+|.- ..++|+.|++++
T Consensus       250 ~N~L--------~~LP~~l~--s~L~~L~Ls~N~L~~LP~~-----l~~sL~~L~Ls~N~Lt~LP~~-lp~sL~~L~Ls~  313 (754)
T PRK15370        250 INRI--------TELPERLP--SALQSLDLFHNKISCLPEN-----LPEELRYLSVYDNSIRTLPAH-LPSGITHLNVQS  313 (754)
T ss_pred             CCcc--------CcCChhHh--CCCCEEECcCCccCccccc-----cCCCCcEEECCCCccccCccc-chhhHHHHHhcC
Confidence            7776        23444443  4677777777766554331     223577777776554444431 123566777776


Q ss_pred             CCCceeccccCCCCCccccccccccEEEecCCCCCCccccccCCCCccEEEEeccCCchhhcccCCCCCCCccccccccC
Q 048462          163 CSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDLKWIRYAPNLQFLYVSYCPRLSEIIGTYESPGTSEIEESQDFF  242 (325)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~  242 (325)
                      |...          .+|....++|+.|++++| .++.++.. -.++|+.|++++|. +..+..            .+  .
T Consensus       314 N~Lt----------~LP~~l~~sL~~L~Ls~N-~Lt~LP~~-l~~sL~~L~Ls~N~-L~~LP~------------~l--p  366 (754)
T PRK15370        314 NSLT----------ALPETLPPGLKTLEAGEN-ALTSLPAS-LPPELQVLDVSKNQ-ITVLPE------------TL--P  366 (754)
T ss_pred             Cccc----------cCCccccccceeccccCC-ccccCChh-hcCcccEEECCCCC-CCcCCh------------hh--c
Confidence            6643          122222356777777776 56655431 13567777777764 222211            11  2


Q ss_pred             CcccEEeccCCCCcceeccCcccCCCccEEeeeCCCCCCCCCCCC
Q 048462          243 SNLMVIDLRHLPSLTSICCGVVPFPSLQTISVNGCPSLRKLPLNS  287 (325)
Q Consensus       243 ~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~ip~~~  287 (325)
                      ++|+.|++.+| .+..+|....  ..|+.|++++| +++.+|..+
T Consensus       367 ~~L~~LdLs~N-~Lt~LP~~l~--~sL~~LdLs~N-~L~~LP~sl  407 (754)
T PRK15370        367 PTITTLDVSRN-ALTNLPENLP--AALQIMQASRN-NLVRLPESL  407 (754)
T ss_pred             CCcCEEECCCC-cCCCCCHhHH--HHHHHHhhccC-CcccCchhH
Confidence            46777777765 4555554322  35666666665 566666543

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.50  E-value=5e-14  Score=134.81  Aligned_cols=224  Identities=22%  Similarity=0.235  Sum_probs=160.4

Q ss_pred             CCCcEEecCCCCCCCcCchhhhCcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEe
Q 048462            2 HALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSW   81 (325)
Q Consensus         2 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l   81 (325)
                      ++|+.|++++| .++.+|..+.  .+|++|++++|.++.+|..+.  .+|+.|++++|.+. .+|.. +.  .+|+.|++
T Consensus       199 ~~L~~L~Ls~N-~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~-~LP~~-l~--s~L~~L~L  269 (754)
T PRK15370        199 EQITTLILDNN-ELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSINRIT-ELPER-LP--SALQSLDL  269 (754)
T ss_pred             cCCcEEEecCC-CCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCCccC-cCChh-Hh--CCCCEEEC
Confidence            46899999999 8999987765  589999999999999987654  47999999997654 67765 53  58999999


Q ss_pred             cccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccccccCCCCCeEEEc
Q 048462           82 FSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPLDLRMDHLETLEID  161 (325)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~l~~L~~L~l~  161 (325)
                      ++|.+        ..++..+.  ++|+.|++++|....++..     ++..|+.|+++++....+|.. ..++|+.|+++
T Consensus       270 s~N~L--------~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~-----lp~sL~~L~Ls~N~Lt~LP~~-l~~sL~~L~Ls  333 (754)
T PRK15370        270 FHNKI--------SCLPENLP--EELRYLSVYDNSIRTLPAH-----LPSGITHLNVQSNSLTALPET-LPPGLKTLEAG  333 (754)
T ss_pred             cCCcc--------CccccccC--CCCcEEECCCCccccCccc-----chhhHHHHHhcCCccccCCcc-ccccceecccc
Confidence            99887        24454443  5899999999987765432     223578888887655555541 23689999999


Q ss_pred             CCCCceeccccCCCCCccccccccccEEEecCCCCCCccccccCCCCccEEEEeccCCchhhcccCCCCCCCcccccccc
Q 048462          162 RCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDLKWIRYAPNLQFLYVSYCPRLSEIIGTYESPGTSEIEESQDF  241 (325)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~  241 (325)
                      +|....          +|....++|+.|++++| +++.++.. -.++|++|++++|. +..++.            .+  
T Consensus       334 ~N~Lt~----------LP~~l~~sL~~L~Ls~N-~L~~LP~~-lp~~L~~LdLs~N~-Lt~LP~------------~l--  386 (754)
T PRK15370        334 ENALTS----------LPASLPPELQVLDVSKN-QITVLPET-LPPTITTLDVSRNA-LTNLPE------------NL--  386 (754)
T ss_pred             CCcccc----------CChhhcCcccEEECCCC-CCCcCChh-hcCCcCEEECCCCc-CCCCCH------------hH--
Confidence            887542          22223468999999998 67766532 24689999999985 333322            22  


Q ss_pred             CCcccEEeccCCCCcceeccCcc----cCCCccEEeeeCCC
Q 048462          242 FSNLMVIDLRHLPSLTSICCGVV----PFPSLQTISVNGCP  278 (325)
Q Consensus       242 ~~~L~~L~l~~~~~l~~~~~~~~----~~~~L~~L~l~~c~  278 (325)
                      ..+|+.|++.+| ++..+|....    .++.+..+++.+++
T Consensus       387 ~~sL~~LdLs~N-~L~~LP~sl~~~~~~~~~l~~L~L~~Np  426 (754)
T PRK15370        387 PAALQIMQASRN-NLVRLPESLPHFRGEGPQPTRIIVEYNP  426 (754)
T ss_pred             HHHHHHHhhccC-CcccCchhHHHHhhcCCCccEEEeeCCC
Confidence            136888888886 5666655332    24778888887764

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.50  E-value=1.5e-13  Score=131.10  Aligned_cols=232  Identities=21%  Similarity=0.230  Sum_probs=120.0

Q ss_pred             CcEEecCCCCCCCcCchhhhCcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEecc
Q 048462            4 LAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWFS   83 (325)
Q Consensus         4 L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~   83 (325)
                      -..|+++++ .++.+|+.+.  .+|+.|++.+|+++.+|..   .++|++|++++|.+ ..+|..    .++|+.|++..
T Consensus       203 ~~~LdLs~~-~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~L-tsLP~l----p~sL~~L~Ls~  271 (788)
T PRK15387        203 NAVLNVGES-GLTTLPDCLP--AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQL-TSLPVL----PPGLLELSIFS  271 (788)
T ss_pred             CcEEEcCCC-CCCcCCcchh--cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCcc-CcccCc----ccccceeeccC
Confidence            346778887 7777777665  3677777777777777653   46777777777533 344432    23555555555


Q ss_pred             cceeee----------eec--cCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeeccccccc
Q 048462           84 TELVEL----------HYV--DSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPLDLR  151 (325)
Q Consensus        84 ~~~~~~----------~~~--~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~  151 (325)
                      |.+...          +..  .-..++.   ..++|+.|++++|....++.+      +..|+.|+++++....+|.+  
T Consensus       272 N~L~~Lp~lp~~L~~L~Ls~N~Lt~LP~---~p~~L~~LdLS~N~L~~Lp~l------p~~L~~L~Ls~N~L~~LP~l--  340 (788)
T PRK15387        272 NPLTHLPALPSGLCKLWIFGNQLTSLPV---LPPGLQELSVSDNQLASLPAL------PSELCKLWAYNNQLTSLPTL--  340 (788)
T ss_pred             CchhhhhhchhhcCEEECcCCccccccc---cccccceeECCCCccccCCCC------cccccccccccCcccccccc--
Confidence            544100          000  0011111   124567777766665544322      12345555554443334431  


Q ss_pred             CCCCCeEEEcCCCCceecccc----------CCCCCccccccccccEEEecCCCCCCccccccCCCCccEEEEeccCCch
Q 048462          152 MDHLETLEIDRCSLESKNDYF----------GDQGRTRTYCFRNLRHLSVKTCPCMTDLKWIRYAPNLQFLYVSYCPRLS  221 (325)
Q Consensus       152 l~~L~~L~l~~~~~~~~~~~~----------~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~  221 (325)
                      ..+|+.|++++|....+....          .....+| ....+|+.|+++++ .++.++..  .++|+.|++++|. +.
T Consensus       341 p~~Lq~LdLS~N~Ls~LP~lp~~L~~L~Ls~N~L~~LP-~l~~~L~~LdLs~N-~Lt~LP~l--~s~L~~LdLS~N~-Ls  415 (788)
T PRK15387        341 PSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLP-ALPSGLKELIVSGN-RLTSLPVL--PSELKELMVSGNR-LT  415 (788)
T ss_pred             ccccceEecCCCccCCCCCCCcccceehhhccccccCc-ccccccceEEecCC-cccCCCCc--ccCCCEEEccCCc-CC
Confidence            136677777766643211000          0000111 11234555555555 44444432  2456666666554 22


Q ss_pred             hhcccCCCCCCCccccccccCCcccEEeccCCCCcceeccCcccCCCccEEeeeCCC
Q 048462          222 EIIGTYESPGTSEIEESQDFFSNLMVIDLRHLPSLTSICCGVVPFPSLQTISVNGCP  278 (325)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~  278 (325)
                      .++            .   .+.+|+.|++.++ +++.+|.....+++|+.|++++++
T Consensus       416 sIP------------~---l~~~L~~L~Ls~N-qLt~LP~sl~~L~~L~~LdLs~N~  456 (788)
T PRK15387        416 SLP------------M---LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNP  456 (788)
T ss_pred             CCC------------c---chhhhhhhhhccC-cccccChHHhhccCCCeEECCCCC
Confidence            221            1   1235667777775 566777666677888888887763

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.46  E-value=5.1e-15  Score=138.38  Aligned_cols=253  Identities=21%  Similarity=0.195  Sum_probs=152.6

Q ss_pred             CCcEEecCCCCCCCcCchhhhCcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEec
Q 048462            3 ALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWF   82 (325)
Q Consensus         3 ~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~   82 (325)
                      +|++||+++| .+...|..+..+.+|+.|+++.|.+..+|....++.+|+++.+.. +....+|.. +.++++|+.|+++
T Consensus        46 ~L~~l~lsnn-~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~-n~l~~lP~~-~~~lknl~~LdlS  122 (1081)
T KOG0618|consen   46 KLKSLDLSNN-QISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKN-NRLQSLPAS-ISELKNLQYLDLS  122 (1081)
T ss_pred             eeEEeecccc-ccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheecc-chhhcCchh-HHhhhcccccccc
Confidence            4899999999 899999999999999999999999999999999999999999988 778889988 9999999999999


Q ss_pred             ccceeeeeeccCccchhhhccCCCcceEEEEec-------------------CcccccccccCccccCCce-EEEEceee
Q 048462           83 STELVELHYVDSTSVLAELESLENIHDISVTLC-------------------NVDAVNRVKSSPKLQSCIK-RLAVVLMA  142 (325)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~-------------------~~~~~~~~~~~~~~~~~L~-~L~l~~~~  142 (325)
                      .|..        ..++.-+..+..++.+..++|                   ....-  +....   .+++ .|++....
T Consensus       123 ~N~f--------~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~--~~~~i---~~l~~~ldLr~N~  189 (1081)
T KOG0618|consen  123 FNHF--------GPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGS--FLIDI---YNLTHQLDLRYNE  189 (1081)
T ss_pred             hhcc--------CCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccc--hhcch---hhhheeeecccch
Confidence            9987        334444444444444444433                   11100  00000   0112 24444322


Q ss_pred             eecccccccCCCCCeEEEcCCCCceecccc----------CC-CCCccccccccccEEEecCCCCCCccc-cccCCCCcc
Q 048462          143 SFLLPLDLRMDHLETLEIDRCSLESKNDYF----------GD-QGRTRTYCFRNLRHLSVKTCPCMTDLK-WIRYAPNLQ  210 (325)
Q Consensus       143 ~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~----------~~-~~~~~~~~~~~L~~L~l~~~~~l~~l~-~~~~~~~L~  210 (325)
                      .. ...+..+++|+.+....+......+..          .. ....+.....+|+++++++. ++..++ |+..+++|+
T Consensus       190 ~~-~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n-~l~~lp~wi~~~~nle  267 (1081)
T KOG0618|consen  190 ME-VLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHN-NLSNLPEWIGACANLE  267 (1081)
T ss_pred             hh-hhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchh-hhhcchHHHHhcccce
Confidence            22 222333444444444333322111000          00 00011122345666666655 444443 455566666


Q ss_pred             EEEEeccCCchhhcccCCCCCCCccccccccCCcccEEeccCCCCcceeccCcccCCCccEEeeeCCCCCCCCCCCCC
Q 048462          211 FLYVSYCPRLSEIIGTYESPGTSEIEESQDFFSNLMVIDLRHLPSLTSICCGVVPFPSLQTISVNGCPSLRKLPLNSG  288 (325)
Q Consensus       211 ~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~ip~~~~  288 (325)
                      .|++.+|.. ..+.            ..+....+|+.|++..| ++..++.....+.+|++|++..+ +|..+|+.+.
T Consensus       268 ~l~~n~N~l-~~lp------------~ri~~~~~L~~l~~~~n-el~yip~~le~~~sL~tLdL~~N-~L~~lp~~~l  330 (1081)
T KOG0618|consen  268 ALNANHNRL-VALP------------LRISRITSLVSLSAAYN-ELEYIPPFLEGLKSLRTLDLQSN-NLPSLPDNFL  330 (1081)
T ss_pred             EecccchhH-HhhH------------HHHhhhhhHHHHHhhhh-hhhhCCCcccccceeeeeeehhc-cccccchHHH
Confidence            666665542 2222            24445556666666665 66666666666788888888654 7777777443

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.45  E-value=1.4e-14  Score=127.56  Aligned_cols=251  Identities=16%  Similarity=0.118  Sum_probs=142.1

Q ss_pred             EEecCCCCCCC--cCchhhhCcccCceecCCCCccc-----ccChhhhccccCceeeccCCCCC------eeechhhhhC
Q 048462            6 VLDLSYNLDLV--KLPEAIGKLINLCYLNLSNTRIG-----QLPTGITYLKNLKILRLDGMRYL------AFVPCQVISS   72 (325)
Q Consensus         6 ~L~l~~~~~~~--~lp~~~~~l~~L~~L~l~~~~l~-----~lp~~l~~l~~L~~L~l~~~~~~------~~~~~~~~~~   72 (325)
                      .|+|.++ .++  .....+..+.+|+.|+++++.++     .++..+...++|++++++++...      ..++.. +..
T Consensus         2 ~l~L~~~-~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~-l~~   79 (319)
T cd00116           2 QLSLKGE-LLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQG-LTK   79 (319)
T ss_pred             ccccccC-cccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHH-HHh
Confidence            3556665 443  33555666777888888888762     35555667777888888775544      122334 666


Q ss_pred             CCcccEEEecccceeeeeeccCccchhhhccC---CCcceEEEEecCcccc--ccccc-CccccCCceEEEEceeeee--
Q 048462           73 LSSLQVFSWFSTELVELHYVDSTSVLAELESL---ENIHDISVTLCNVDAV--NRVKS-SPKLQSCIKRLAVVLMASF--  144 (325)
Q Consensus        73 l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l---~~L~~L~l~~~~~~~~--~~~~~-~~~~~~~L~~L~l~~~~~~--  144 (325)
                      +++|+.|++.+|.+       .......+..+   ++|++|++.+|.....  ..+.. ......+|+.|+++++...  
T Consensus        80 ~~~L~~L~l~~~~~-------~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~  152 (319)
T cd00116          80 GCGLQELDLSDNAL-------GPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGA  152 (319)
T ss_pred             cCceeEEEccCCCC-------ChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCch
Confidence            77888888888776       32333333333   3488888887765421  11111 1111245788888765433  


Q ss_pred             ---cccc-cccCCCCCeEEEcCCCCceeccccCCCCCccc--cccccccEEEecCCCCCCcc------ccccCCCCccEE
Q 048462          145 ---LLPL-DLRMDHLETLEIDRCSLESKNDYFGDQGRTRT--YCFRNLRHLSVKTCPCMTDL------KWIRYAPNLQFL  212 (325)
Q Consensus       145 ---~l~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~l~~l------~~~~~~~~L~~L  212 (325)
                         .+.. +..+++|++|++++|...+...     ..++.  ..+++|++|++++| .+++.      ..+..+++|++|
T Consensus       153 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-----~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~~~~~~~L~~L  226 (319)
T cd00116         153 SCEALAKALRANRDLKELNLANNGIGDAGI-----RALAEGLKANCNLEVLDLNNN-GLTDEGASALAETLASLKSLEVL  226 (319)
T ss_pred             HHHHHHHHHHhCCCcCEEECcCCCCchHHH-----HHHHHHHHhCCCCCEEeccCC-ccChHHHHHHHHHhcccCCCCEE
Confidence               1222 5566788888888876531110     01111  23468888888888 55532      234467788888


Q ss_pred             EEeccCCchhhcccCCCCCCCccccc-cccCCcccEEeccCCCCcc-----eeccCcccCCCccEEeeeCCCCCC
Q 048462          213 YVSYCPRLSEIIGTYESPGTSEIEES-QDFFSNLMVIDLRHLPSLT-----SICCGVVPFPSLQTISVNGCPSLR  281 (325)
Q Consensus       213 ~l~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~l~-----~~~~~~~~~~~L~~L~l~~c~~l~  281 (325)
                      ++++|.. .+....       .+... ....+.|++|++.+| .++     .+......+++|+.++++++ .++
T Consensus       227 ~ls~n~l-~~~~~~-------~l~~~~~~~~~~L~~L~l~~n-~i~~~~~~~l~~~~~~~~~L~~l~l~~N-~l~  291 (319)
T cd00116         227 NLGDNNL-TDAGAA-------ALASALLSPNISLLTLSLSCN-DITDDGAKDLAEVLAEKESLLELDLRGN-KFG  291 (319)
T ss_pred             ecCCCcC-chHHHH-------HHHHHHhccCCCceEEEccCC-CCCcHHHHHHHHHHhcCCCccEEECCCC-CCc
Confidence            8888763 221110       00000 012467888888887 332     12222334578888888776 444

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.41  E-value=9e-14  Score=122.36  Aligned_cols=256  Identities=18%  Similarity=0.111  Sum_probs=164.8

Q ss_pred             CCCcEEecCCCCCCC-----cCchhhhCcccCceecCCCCcccc-------cChhhhccccCceeeccCCCCCeeechhh
Q 048462            2 HALAVLDLSYNLDLV-----KLPEAIGKLINLCYLNLSNTRIGQ-------LPTGITYLKNLKILRLDGMRYLAFVPCQV   69 (325)
Q Consensus         2 ~~L~~L~l~~~~~~~-----~lp~~~~~l~~L~~L~l~~~~l~~-------lp~~l~~l~~L~~L~l~~~~~~~~~~~~~   69 (325)
                      +.|+.|++++| .++     .++..+...+.|++++++++.+..       ++..+.++++|+.|++++|.+....+.. 
T Consensus        23 ~~L~~l~l~~~-~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-  100 (319)
T cd00116          23 LCLQVLRLEGN-TLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGV-  100 (319)
T ss_pred             hhccEEeecCC-CCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHH-
Confidence            45889999999 663     356667778889999999886542       3445677889999999998876555544 


Q ss_pred             hhCCCc---ccEEEecccceeeeeeccCccchhhhccC-CCcceEEEEecCcccc--cccccCccccCCceEEEEceeee
Q 048462           70 ISSLSS---LQVFSWFSTELVELHYVDSTSVLAELESL-ENIHDISVTLCNVDAV--NRVKSSPKLQSCIKRLAVVLMAS  143 (325)
Q Consensus        70 ~~~l~~---L~~L~l~~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~  143 (325)
                      +..+.+   |++|++++|....   .........+..+ ++|+.|++++|.....  ..+.........|++|+++++..
T Consensus       101 ~~~l~~~~~L~~L~ls~~~~~~---~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l  177 (319)
T cd00116         101 LESLLRSSSLQELKLNNNGLGD---RGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGI  177 (319)
T ss_pred             HHHHhccCcccEEEeeCCccch---HHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCC
Confidence            555554   9999999998700   0001233456667 8999999999986631  22222222234689999986543


Q ss_pred             e--c---ccc-cccCCCCCeEEEcCCCCceeccccCCCCCccc--cccccccEEEecCCCCCCcc--cccc-----CCCC
Q 048462          144 F--L---LPL-DLRMDHLETLEIDRCSLESKNDYFGDQGRTRT--YCFRNLRHLSVKTCPCMTDL--KWIR-----YAPN  208 (325)
Q Consensus       144 ~--~---l~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~l~~l--~~~~-----~~~~  208 (325)
                      .  .   ++. +..+++|++|++++|...+...     ..+..  ..+++|++|++++| .+++.  ..+.     ..+.
T Consensus       178 ~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~-----~~l~~~~~~~~~L~~L~ls~n-~l~~~~~~~l~~~~~~~~~~  251 (319)
T cd00116         178 GDAGIRALAEGLKANCNLEVLDLNNNGLTDEGA-----SALAETLASLKSLEVLNLGDN-NLTDAGAAALASALLSPNIS  251 (319)
T ss_pred             chHHHHHHHHHHHhCCCCCEEeccCCccChHHH-----HHHHHHhcccCCCCEEecCCC-cCchHHHHHHHHHHhccCCC
Confidence            3  1   222 4556799999999997642111     11111  45789999999998 67652  1111     2479


Q ss_pred             ccEEEEeccCCchhhcccCCCCCCCccccccccCCcccEEeccCCCCccee-----ccCcccC-CCccEEeeeCC
Q 048462          209 LQFLYVSYCPRLSEIIGTYESPGTSEIEESQDFFSNLMVIDLRHLPSLTSI-----CCGVVPF-PSLQTISVNGC  277 (325)
Q Consensus       209 L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-----~~~~~~~-~~L~~L~l~~c  277 (325)
                      |++|++.+|.......        ..+......+++|++++++++ .+.+.     ......+ +.|++++|.+.
T Consensus       252 L~~L~l~~n~i~~~~~--------~~l~~~~~~~~~L~~l~l~~N-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (319)
T cd00116         252 LLTLSLSCNDITDDGA--------KDLAEVLAEKESLLELDLRGN-KFGEEGAQLLAESLLEPGNELESLWVKDD  317 (319)
T ss_pred             ceEEEccCCCCCcHHH--------HHHHHHHhcCCCccEEECCCC-CCcHHHHHHHHHHHhhcCCchhhcccCCC
Confidence            9999999996431111        011234556689999999997 44322     2122234 67888887654

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.37  E-value=7.4e-15  Score=111.92  Aligned_cols=155  Identities=27%  Similarity=0.359  Sum_probs=97.7

Q ss_pred             CCcEEecCCCCCCCcCchhhhCcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEec
Q 048462            3 ALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWF   82 (325)
Q Consensus         3 ~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~   82 (325)
                      +...|.+++| .++.+|+.++.+++|+.|++.+|+++++|..++.+++|++|++.- +....+|.+ ++.++.|+.||+.
T Consensus        34 ~ITrLtLSHN-Kl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgm-nrl~~lprg-fgs~p~levldlt  110 (264)
T KOG0617|consen   34 NITRLTLSHN-KLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGM-NRLNILPRG-FGSFPALEVLDLT  110 (264)
T ss_pred             hhhhhhcccC-ceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecch-hhhhcCccc-cCCCchhhhhhcc
Confidence            4455666777 666667777777777777777777777777777777777777765 344456666 7777777777777


Q ss_pred             ccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccc-cccCCCCCeEEEc
Q 048462           83 STELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPL-DLRMDHLETLEID  161 (325)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~-l~~l~~L~~L~l~  161 (325)
                      ++.+      .+...+..+..++.|+.|.++.+...                          .+|. ++.+.+|+.|.+.
T Consensus       111 ynnl------~e~~lpgnff~m~tlralyl~dndfe--------------------------~lp~dvg~lt~lqil~lr  158 (264)
T KOG0617|consen  111 YNNL------NENSLPGNFFYMTTLRALYLGDNDFE--------------------------ILPPDVGKLTNLQILSLR  158 (264)
T ss_pred             cccc------ccccCCcchhHHHHHHHHHhcCCCcc--------------------------cCChhhhhhcceeEEeec
Confidence            7665      13344555666666666666555433                          3333 6677777777777


Q ss_pred             CCCCceeccccCCCCCccccccccccEEEecCCCCCCccc
Q 048462          162 RCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDLK  201 (325)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~  201 (325)
                      +|+.++...+      +  +.+..|++|.+.++ .++.++
T Consensus       159 dndll~lpke------i--g~lt~lrelhiqgn-rl~vlp  189 (264)
T KOG0617|consen  159 DNDLLSLPKE------I--GDLTRLRELHIQGN-RLTVLP  189 (264)
T ss_pred             cCchhhCcHH------H--HHHHHHHHHhcccc-eeeecC
Confidence            7775422110      0  45667777777777 565543

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.34  E-value=6.3e-12  Score=120.14  Aligned_cols=203  Identities=23%  Similarity=0.216  Sum_probs=117.0

Q ss_pred             CCcEEecCCCCCCCcCchhhhCcccCceecCCCCcccccChhhhc-----------------cccCceeeccCCCCCeee
Q 048462            3 ALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITY-----------------LKNLKILRLDGMRYLAFV   65 (325)
Q Consensus         3 ~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~l~~-----------------l~~L~~L~l~~~~~~~~~   65 (325)
                      +|+.|++.+| .++.+|..   .++|++|++++|+++.+|....+                 ..+|+.|++++|. ...+
T Consensus       223 ~L~~L~L~~N-~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~lp~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~-Lt~L  297 (788)
T PRK15387        223 HITTLVIPDN-NLTSLPAL---PPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQ-LTSL  297 (788)
T ss_pred             CCCEEEccCC-cCCCCCCC---CCCCcEEEecCCccCcccCcccccceeeccCCchhhhhhchhhcCEEECcCCc-cccc
Confidence            4566666666 56666542   35666666666666555532110                 1233344444432 2223


Q ss_pred             chhhhhCCCcccEEEecccceeeeeeccCccchhh-------------hccC-CCcceEEEEecCcccccccccCccccC
Q 048462           66 PCQVISSLSSLQVFSWFSTELVELHYVDSTSVLAE-------------LESL-ENIHDISVTLCNVDAVNRVKSSPKLQS  131 (325)
Q Consensus        66 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~-------------l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~  131 (325)
                      |.    ..++|+.|++++|.+...     ...+..             +..+ .+|+.|++++|.+..++..      ..
T Consensus       298 P~----~p~~L~~LdLS~N~L~~L-----p~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~LP~l------p~  362 (788)
T PRK15387        298 PV----LPPGLQELSVSDNQLASL-----PALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLASLPTL------PS  362 (788)
T ss_pred             cc----cccccceeECCCCccccC-----CCCcccccccccccCccccccccccccceEecCCCccCCCCCC------Cc
Confidence            32    135678888887766110     001100             1111 2566666666665544322      23


Q ss_pred             CceEEEEceeeeecccccccCCCCCeEEEcCCCCceeccccCCCCCccccccccccEEEecCCCCCCccccccCCCCccE
Q 048462          132 CIKRLAVVLMASFLLPLDLRMDHLETLEIDRCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDLKWIRYAPNLQF  211 (325)
Q Consensus       132 ~L~~L~l~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~L~~  211 (325)
                      +|+.|++++.....+|.+  ..+|+.|++++|...          .+| ...++|+.|+++++ .++.++..  ..+|+.
T Consensus       363 ~L~~L~Ls~N~L~~LP~l--~~~L~~LdLs~N~Lt----------~LP-~l~s~L~~LdLS~N-~LssIP~l--~~~L~~  426 (788)
T PRK15387        363 ELYKLWAYNNRLTSLPAL--PSGLKELIVSGNRLT----------SLP-VLPSELKELMVSGN-RLTSLPML--PSGLLS  426 (788)
T ss_pred             ccceehhhccccccCccc--ccccceEEecCCccc----------CCC-CcccCCCEEEccCC-cCCCCCcc--hhhhhh
Confidence            466666665444445542  357888888888753          222 12468999999999 78877653  457889


Q ss_pred             EEEeccCCchhhcccCCCCCCCccccccccCCcccEEeccCCC
Q 048462          212 LYVSYCPRLSEIIGTYESPGTSEIEESQDFFSNLMVIDLRHLP  254 (325)
Q Consensus       212 L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  254 (325)
                      |++++|. ++.+            |..+..+++|+.|++++++
T Consensus       427 L~Ls~Nq-Lt~L------------P~sl~~L~~L~~LdLs~N~  456 (788)
T PRK15387        427 LSVYRNQ-LTRL------------PESLIHLSSETTVNLEGNP  456 (788)
T ss_pred             hhhccCc-cccc------------ChHHhhccCCCeEECCCCC
Confidence            9999886 3333            3477889999999999984

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.27  E-value=3.1e-12  Score=124.58  Aligned_cols=107  Identities=24%  Similarity=0.288  Sum_probs=80.6

Q ss_pred             CCCCcEEecCCCCC-CCcCc-hhhhCcccCceecCCCC-cccccChhhhccccCceeeccCCCCCeeechhhhhCCCccc
Q 048462            1 MHALAVLDLSYNLD-LVKLP-EAIGKLINLCYLNLSNT-RIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQ   77 (325)
Q Consensus         1 ~~~L~~L~l~~~~~-~~~lp-~~~~~l~~L~~L~l~~~-~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~   77 (325)
                      ++.|++|-+.++.. +..++ +.|..++.|++||+++| .+.++|..++.+.+||+|++++ +.+..+|.+ ++++++|.
T Consensus       544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~-t~I~~LP~~-l~~Lk~L~  621 (889)
T KOG4658|consen  544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD-TGISHLPSG-LGNLKKLI  621 (889)
T ss_pred             CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccC-CCccccchH-HHHHHhhh
Confidence            35677777777732 45554 44777899999999987 6788999999999999999988 556688888 88999999


Q ss_pred             EEEecccceeeeeeccCccchhhhccCCCcceEEEEecC
Q 048462           78 VFSWFSTELVELHYVDSTSVLAELESLENIHDISVTLCN  116 (325)
Q Consensus        78 ~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  116 (325)
                      +|++..+..       ....+.....+++|+.|.+....
T Consensus       622 ~Lnl~~~~~-------l~~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  622 YLNLEVTGR-------LESIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             eeccccccc-------cccccchhhhcccccEEEeeccc
Confidence            998888765       23334455568888888887664

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.25  E-value=1.1e-12  Score=112.30  Aligned_cols=108  Identities=23%  Similarity=0.278  Sum_probs=91.0

Q ss_pred             cEEecCCCCCCCcCc-hhhhCcccCceecCCCCccccc-ChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEec
Q 048462            5 AVLDLSYNLDLVKLP-EAIGKLINLCYLNLSNTRIGQL-PTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWF   82 (325)
Q Consensus         5 ~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~l~~l-p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~   82 (325)
                      ..+.|..| .|+.+| .+|+.+++||.|+++.|.|..+ |.++..+.+|..|-+.+++.++.+|..+++++..|+.|.+.
T Consensus        70 veirLdqN-~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllN  148 (498)
T KOG4237|consen   70 VEIRLDQN-QISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLN  148 (498)
T ss_pred             eEEEeccC-CcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcC
Confidence            45778888 899996 6688999999999999999755 67789999999999988888999998889999999999998


Q ss_pred             ccceeeeeeccCccchhhhccCCCcceEEEEecCcccc
Q 048462           83 STELVELHYVDSTSVLAELESLENIHDISVTLCNVDAV  120 (325)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  120 (325)
                      -+.+       ...-...+..+++|..|.+..+.+..+
T Consensus       149 an~i-------~Cir~~al~dL~~l~lLslyDn~~q~i  179 (498)
T KOG4237|consen  149 ANHI-------NCIRQDALRDLPSLSLLSLYDNKIQSI  179 (498)
T ss_pred             hhhh-------cchhHHHHHHhhhcchhcccchhhhhh
Confidence            8887       555666788889998888888865543

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.22  E-value=2.9e-13  Score=103.28  Aligned_cols=109  Identities=23%  Similarity=0.343  Sum_probs=96.5

Q ss_pred             CCCCcEEecCCCCCCCcCchhhhCcccCceecCCCCcccccChhhhccccCceeeccCCCCCe-eechhhhhCCCcccEE
Q 048462            1 MHALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLA-FVPCQVISSLSSLQVF   79 (325)
Q Consensus         1 ~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~~l~~L~~L   79 (325)
                      +.+|++|++++| .++++|..++.+++|+.|+++-|++..+|.+++.++-|+.||+.+|+... .+|.. +..+..|+-|
T Consensus        55 l~nlevln~~nn-qie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~~lpgn-ff~m~tlral  132 (264)
T KOG0617|consen   55 LKNLEVLNLSNN-QIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENSLPGN-FFYMTTLRAL  132 (264)
T ss_pred             hhhhhhhhcccc-hhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccccccccCCcc-hhHHHHHHHH
Confidence            367899999999 89999999999999999999999999999999999999999999987665 56665 8888999999


Q ss_pred             EecccceeeeeeccCccchhhhccCCCcceEEEEecCccc
Q 048462           80 SWFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDA  119 (325)
Q Consensus        80 ~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  119 (325)
                      ++..+..        +..+.+++++++|+.|.+..+....
T Consensus       133 yl~dndf--------e~lp~dvg~lt~lqil~lrdndll~  164 (264)
T KOG0617|consen  133 YLGDNDF--------EILPPDVGKLTNLQILSLRDNDLLS  164 (264)
T ss_pred             HhcCCCc--------ccCChhhhhhcceeEEeeccCchhh
Confidence            9999887        6788999999999999988876544

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.16  E-value=9.6e-13  Score=113.42  Aligned_cols=262  Identities=18%  Similarity=0.187  Sum_probs=139.5

Q ss_pred             CCcEEecCCCCCCC--cCchhhhCcccCceecCCCC-ccc--ccChhhhccccCceeeccCCCCCeeec-hhhhhCCCcc
Q 048462            3 ALAVLDLSYNLDLV--KLPEAIGKLINLCYLNLSNT-RIG--QLPTGITYLKNLKILRLDGMRYLAFVP-CQVISSLSSL   76 (325)
Q Consensus         3 ~L~~L~l~~~~~~~--~lp~~~~~l~~L~~L~l~~~-~l~--~lp~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~l~~L   76 (325)
                      .|+.|.++||..+.  .+-.....|++++.|.+.+| +++  .+-..-.+|.+|+++++..|...+... ......+++|
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL  218 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL  218 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence            46788888884444  33455667888888888888 453  222223568888888888876555443 2224458888


Q ss_pred             cEEEecccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCc--------------------------ccc
Q 048462           77 QVFSWFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSP--------------------------KLQ  130 (325)
Q Consensus        77 ~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~--------------------------~~~  130 (325)
                      ++|.+++|.-+.     ....-.....++.++.+...+|.....+.+..+.                          ..+
T Consensus       219 ~~lNlSwc~qi~-----~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c  293 (483)
T KOG4341|consen  219 KYLNLSWCPQIS-----GNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGC  293 (483)
T ss_pred             HHhhhccCchhh-----cCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhh
Confidence            888888886521     1111122233444555544455443333333222                          223


Q ss_pred             CCceEEEEceeeeeccc---c-cccCCCCCeEEEcCCCCceeccccCCCCCccc-cccccccEEEecCCCCCCcc---cc
Q 048462          131 SCIKRLAVVLMASFLLP---L-DLRMDHLETLEIDRCSLESKNDYFGDQGRTRT-YCFRNLRHLSVKTCPCMTDL---KW  202 (325)
Q Consensus       131 ~~L~~L~l~~~~~~~l~---~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~l~~l---~~  202 (325)
                      ..++.++.++++.+...   + .++.++|+.+.+++|.....      .++... .+++.|+.+++.+|....+-   ..
T Consensus       294 ~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd------~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sl  367 (483)
T KOG4341|consen  294 HALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSD------RGFTMLGRNCPHLERLDLEECGLITDGTLASL  367 (483)
T ss_pred             hHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhh------hhhhhhhcCChhhhhhcccccceehhhhHhhh
Confidence            33444444444333221   1 23456666666666654210      111111 45566666666666433332   12


Q ss_pred             ccCCCCccEEEEeccCCchhhcccCCCCCCCccccccccCCcccEEeccCCCCcceeccC-cccCCCccEEeeeCCCCCC
Q 048462          203 IRYAPNLQFLYVSYCPRLSEIIGTYESPGTSEIEESQDFFSNLMVIDLRHLPSLTSICCG-VVPFPSLQTISVNGCPSLR  281 (325)
Q Consensus       203 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~l~~c~~l~  281 (325)
                      ..+++.|+.|.+++|..+++.+...       +.........|+.+.+.+|+.+.+.... ...++.|+.+++.+|..++
T Consensus       368 s~~C~~lr~lslshce~itD~gi~~-------l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vt  440 (483)
T KOG4341|consen  368 SRNCPRLRVLSLSHCELITDEGIRH-------LSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVT  440 (483)
T ss_pred             ccCCchhccCChhhhhhhhhhhhhh-------hhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhh
Confidence            2346667777777776665542211       1123344566667777777665543221 2346677777777776665


Q ss_pred             C
Q 048462          282 K  282 (325)
Q Consensus       282 ~  282 (325)
                      +
T Consensus       441 k  441 (483)
T KOG4341|consen  441 K  441 (483)
T ss_pred             h
Confidence            3

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.13  E-value=1.1e-12  Score=108.57  Aligned_cols=63  Identities=17%  Similarity=0.088  Sum_probs=43.0

Q ss_pred             cccccccEEEecCCCCCCc--cccccCCCCccEEEEeccCCchhhcccCCCCCCCccccccccCCcccEEeccCCC
Q 048462          181 YCFRNLRHLSVKTCPCMTD--LKWIRYAPNLQFLYVSYCPRLSEIIGTYESPGTSEIEESQDFFSNLMVIDLRHLP  254 (325)
Q Consensus       181 ~~~~~L~~L~l~~~~~l~~--l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  254 (325)
                      ..+|+|.+|++++|..++.  +..+.+++.|++|.++.|+.+..-..           -.+...|.|.+|++.||-
T Consensus       310 ~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~-----------~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  310 RRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETL-----------LELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             HhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHe-----------eeeccCcceEEEEecccc
Confidence            5677888888888766655  33455678888888888875533221           245667888888888873

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.13  E-value=1e-11  Score=107.68  Aligned_cols=205  Identities=17%  Similarity=0.127  Sum_probs=133.9

Q ss_pred             CCCcEEecCCCCCCCcCc--hhhhCcccCceecCCCCcc---cccChhhhccccCceeeccCCCCCeeechhhhhCCCcc
Q 048462            2 HALAVLDLSYNLDLVKLP--EAIGKLINLCYLNLSNTRI---GQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSL   76 (325)
Q Consensus         2 ~~L~~L~l~~~~~~~~lp--~~~~~l~~L~~L~l~~~~l---~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L   76 (325)
                      ++|+...|.++ .+...+  .....|++++.|+++.|=+   ..+-.....+|+|+.|+++.|..........-..++.|
T Consensus       121 kkL~~IsLdn~-~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~l  199 (505)
T KOG3207|consen  121 KKLREISLDNY-RVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHL  199 (505)
T ss_pred             HhhhheeecCc-cccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhh
Confidence            56788888888 676665  3677788999999988844   34444467789999999988755443333212346788


Q ss_pred             cEEEecccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccc---cccCC
Q 048462           77 QVFSWFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPL---DLRMD  153 (325)
Q Consensus        77 ~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~---l~~l~  153 (325)
                      +.|.++.|++      .+.....-+..+|+|+.|.+..|.........  ......|+.|+|++.....++.   ++.+|
T Consensus       200 K~L~l~~CGl------s~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~--~~i~~~L~~LdLs~N~li~~~~~~~~~~l~  271 (505)
T KOG3207|consen  200 KQLVLNSCGL------SWKDVQWILLTFPSLEVLYLEANEIILIKATS--TKILQTLQELDLSNNNLIDFDQGYKVGTLP  271 (505)
T ss_pred             heEEeccCCC------CHHHHHHHHHhCCcHHHhhhhcccccceecch--hhhhhHHhhccccCCccccccccccccccc
Confidence            8889999887      13333444556788999999888533322221  1223458888888766665553   77888


Q ss_pred             CCCeEEEcCCCCceeccccCCCCCcc-ccccccccEEEecCCCCCCccc---cccCCCCccEEEEeccC
Q 048462          154 HLETLEIDRCSLESKNDYFGDQGRTR-TYCFRNLRHLSVKTCPCMTDLK---WIRYAPNLQFLYVSYCP  218 (325)
Q Consensus       154 ~L~~L~l~~~~~~~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~l~~l~---~~~~~~~L~~L~l~~~~  218 (325)
                      .|+.|+++.++..++...-.+  ... ...+++|++|++..+ .+.+++   .+..+++|++|.+..++
T Consensus       272 ~L~~Lnls~tgi~si~~~d~~--s~~kt~~f~kL~~L~i~~N-~I~~w~sl~~l~~l~nlk~l~~~~n~  337 (505)
T KOG3207|consen  272 GLNQLNLSSTGIASIAEPDVE--SLDKTHTFPKLEYLNISEN-NIRDWRSLNHLRTLENLKHLRITLNY  337 (505)
T ss_pred             chhhhhccccCcchhcCCCcc--chhhhcccccceeeecccC-ccccccccchhhccchhhhhhccccc
Confidence            888888888886543321110  000 156788999988888 454444   44556777777765554

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.12  E-value=3.8e-12  Score=109.80  Aligned_cols=236  Identities=17%  Similarity=0.197  Sum_probs=139.9

Q ss_pred             ccCceecCCCCc-c--cccChhhhccccCceeeccCCCCCeeech-hhhhCCCcccEEEecccceeeeeeccCccchhh-
Q 048462           26 INLCYLNLSNTR-I--GQLPTGITYLKNLKILRLDGMRYLAFVPC-QVISSLSSLQVFSWFSTELVELHYVDSTSVLAE-  100 (325)
Q Consensus        26 ~~L~~L~l~~~~-l--~~lp~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~-  100 (325)
                      -.|+.|.++++. .  ..+-....+++++++|++.+|..++.-.. ..-..+++|++|++..|..+      +....+. 
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~i------T~~~Lk~l  211 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSI------TDVSLKYL  211 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchh------HHHHHHHH
Confidence            368999999983 3  35555678899999999999986664332 21345999999999997641      4444443 


Q ss_pred             hccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeeccccc----ccCCCCCeEEEcCCCCceeccccCCCC
Q 048462          101 LESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPLD----LRMDHLETLEIDRCSLESKNDYFGDQG  176 (325)
Q Consensus       101 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l----~~l~~L~~L~l~~~~~~~~~~~~~~~~  176 (325)
                      ...+++|..++++++....-.++.....-++.++++...||....+..+    ++++-+.++++..|..+...     ..
T Consensus       212 a~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~-----~~  286 (483)
T KOG4341|consen  212 AEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDE-----DL  286 (483)
T ss_pred             HHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccch-----HH
Confidence            3578999999999997544333222222223355555556655544442    23344556665555433110     01


Q ss_pred             Cccc--------------------------cccccccEEEecCCCCCCccc--c-ccCCCCccEEEEeccCCchhhcccC
Q 048462          177 RTRT--------------------------YCFRNLRHLSVKTCPCMTDLK--W-IRYAPNLQFLYVSYCPRLSEIIGTY  227 (325)
Q Consensus       177 ~~~~--------------------------~~~~~L~~L~l~~~~~l~~l~--~-~~~~~~L~~L~l~~~~~l~~~~~~~  227 (325)
                      |...                          ...++|+.+-++.|.++++..  . -..++.|+.+++..|..+.+.    
T Consensus       287 ~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~----  362 (483)
T KOG4341|consen  287 WLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDG----  362 (483)
T ss_pred             HHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhh----
Confidence            1111                          233455555555554444421  1 123445555555554433222    


Q ss_pred             CCCCCCccccccccCCcccEEeccCCCCccee-----ccCcccCCCccEEeeeCCCCCCC
Q 048462          228 ESPGTSEIEESQDFFSNLMVIDLRHLPSLTSI-----CCGVVPFPSLQTISVNGCPSLRK  282 (325)
Q Consensus       228 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-----~~~~~~~~~L~~L~l~~c~~l~~  282 (325)
                            .+.....+++.|+.+.+++|...++.     .....++..|+.+++++|+.++.
T Consensus       363 ------tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d  416 (483)
T KOG4341|consen  363 ------TLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITD  416 (483)
T ss_pred             ------hHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchH
Confidence                  12234467889999999988766554     44445677899999999988874

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.10  E-value=3.6e-12  Score=109.23  Aligned_cols=223  Identities=17%  Similarity=0.229  Sum_probs=140.6

Q ss_pred             CCCCcEEecCCCCCCCcC-chhhhCcccCceecCCC-CcccccChh-hhccccCceeeccCCCCCeeechhhhhCCCccc
Q 048462            1 MHALAVLDLSYNLDLVKL-PEAIGKLINLCYLNLSN-TRIGQLPTG-ITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQ   77 (325)
Q Consensus         1 ~~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~l~~-~~l~~lp~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~   77 (325)
                      +++||.|||+.| .|+.+ |++|.+++.|.+|-+.+ |+|+.+|.. +.++..|+.|.+.-|...- ++..++..+++|.
T Consensus        90 l~~LRrLdLS~N-~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~C-ir~~al~dL~~l~  167 (498)
T KOG4237|consen   90 LHRLRRLDLSKN-NISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINC-IRQDALRDLPSLS  167 (498)
T ss_pred             hhhhceeccccc-chhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcc-hhHHHHHHhhhcc
Confidence            468999999999 89988 89999999999988887 699999987 6789999999998855443 4444489999999


Q ss_pred             EEEecccceeeeeeccCccchhhhccCCCcceEEEEecCccc------cc----------ccc-c---------------
Q 048462           78 VFSWFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDA------VN----------RVK-S---------------  125 (325)
Q Consensus        78 ~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~------~~----------~~~-~---------------  125 (325)
                      .|++..+.+       ....-..+..+..++.+.++.+....      ..          ++. .               
T Consensus       168 lLslyDn~~-------q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~  240 (498)
T KOG4237|consen  168 LLSLYDNKI-------QSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQED  240 (498)
T ss_pred             hhcccchhh-------hhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccc
Confidence            999999876       22222255566666666655554110      00          000 0               


Q ss_pred             CccccCCceEE--EEc-eee-eecccc--cccCCCCCeEEEcCCCCceeccccCCCCCccccccccccEEEecCCCCCCc
Q 048462          126 SPKLQSCIKRL--AVV-LMA-SFLLPL--DLRMDHLETLEIDRCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTD  199 (325)
Q Consensus       126 ~~~~~~~L~~L--~l~-~~~-~~~l~~--l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~  199 (325)
                      +..+..+++.+  .+. .+. ...-|.  +..+++|++|++++|....+.     ++++  .....+++|.+.++ ++..
T Consensus       241 a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~-----~~aF--e~~a~l~eL~L~~N-~l~~  312 (498)
T KOG4237|consen  241 ARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIE-----DGAF--EGAAELQELYLTRN-KLEF  312 (498)
T ss_pred             hhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhh-----hhhh--cchhhhhhhhcCcc-hHHH
Confidence            00000011111  000 111 112233  778899999999998865322     3333  24567778878777 6665


Q ss_pred             cc--cccCCCCccEEEEeccCCchhhcccCCCCCCCccccccccCCcccEEeccC
Q 048462          200 LK--WIRYAPNLQFLYVSYCPRLSEIIGTYESPGTSEIEESQDFFSNLMVIDLRH  252 (325)
Q Consensus       200 l~--~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~  252 (325)
                      +.  .+..+.+|+.|++++|. ++.+..           ..+.....|..|.+-.
T Consensus       313 v~~~~f~~ls~L~tL~L~~N~-it~~~~-----------~aF~~~~~l~~l~l~~  355 (498)
T KOG4237|consen  313 VSSGMFQGLSGLKTLSLYDNQ-ITTVAP-----------GAFQTLFSLSTLNLLS  355 (498)
T ss_pred             HHHHhhhccccceeeeecCCe-eEEEec-----------ccccccceeeeeehcc
Confidence            53  45567788888888876 344432           2344455556665553

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.08  E-value=2.2e-11  Score=102.93  Aligned_cols=235  Identities=14%  Similarity=0.119  Sum_probs=141.7

Q ss_pred             CCCcEEecCCCCCCC-----cCchhhhCcccCceecCCCCc---c-cccChh-------hhccccCceeeccCCCCCeee
Q 048462            2 HALAVLDLSYNLDLV-----KLPEAIGKLINLCYLNLSNTR---I-GQLPTG-------ITYLKNLKILRLDGMRYLAFV   65 (325)
Q Consensus         2 ~~L~~L~l~~~~~~~-----~lp~~~~~l~~L~~L~l~~~~---l-~~lp~~-------l~~l~~L~~L~l~~~~~~~~~   65 (325)
                      ..+.++++++| .++     .+.+.+.+.++|+..++++-.   . .++|..       +..+++|+++++++|-+....
T Consensus        30 ~s~~~l~lsgn-t~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g  108 (382)
T KOG1909|consen   30 DSLTKLDLSGN-TFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG  108 (382)
T ss_pred             CceEEEeccCC-chhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence            46789999999 665     345567778889998888752   2 355554       567889999999998665544


Q ss_pred             ch---hhhhCCCcccEEEecccceeeeeeccCcc---------chhhhccCCCcceEEEEecCccccc--ccccCccccC
Q 048462           66 PC---QVISSLSSLQVFSWFSTELVELHYVDSTS---------VLAELESLENIHDISVTLCNVDAVN--RVKSSPKLQS  131 (325)
Q Consensus        66 ~~---~~~~~l~~L~~L~l~~~~~~~~~~~~~~~---------~~~~l~~l~~L~~L~l~~~~~~~~~--~~~~~~~~~~  131 (325)
                      +.   ..++.+..|++|++.+|++-..   ....         ..+-+.+-++|+.+....|+.....  .+.......+
T Consensus       109 ~~~l~~ll~s~~~L~eL~L~N~Glg~~---ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~  185 (382)
T KOG1909|consen  109 IRGLEELLSSCTDLEELYLNNCGLGPE---AGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHP  185 (382)
T ss_pred             hHHHHHHHHhccCHHHHhhhcCCCChh---HHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcc
Confidence            32   2267899999999999987100   0000         1122345578999998888765432  2222333344


Q ss_pred             CceEEEEce--eeeecc----cccccCCCCCeEEEcCCCCceec-cccCCCCCccccccccccEEEecCCCCCCccc---
Q 048462          132 CIKRLAVVL--MASFLL----PLDLRMDHLETLEIDRCSLESKN-DYFGDQGRTRTYCFRNLRHLSVKTCPCMTDLK---  201 (325)
Q Consensus       132 ~L~~L~l~~--~~~~~l----~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~---  201 (325)
                      .|+.+.+..  ++.-.+    .++.++++|+.|++.+|.+.... ...  -..+  ..+++|+.|++++| .+.+=.   
T Consensus       186 ~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~L--akaL--~s~~~L~El~l~dc-ll~~~Ga~a  260 (382)
T KOG1909|consen  186 TLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVAL--AKAL--SSWPHLRELNLGDC-LLENEGAIA  260 (382)
T ss_pred             ccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHH--HHHh--cccchheeeccccc-ccccccHHH
Confidence            577777762  222222    22677888888888888764211 000  0001  45677888888888 565421   


Q ss_pred             ---c-ccCCCCccEEEEeccCCchhhcccCCCCCCCccccccccCCcccEEeccCC
Q 048462          202 ---W-IRYAPNLQFLYVSYCPRLSEIIGTYESPGTSEIEESQDFFSNLMVIDLRHL  253 (325)
Q Consensus       202 ---~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  253 (325)
                         . -...|+|+.|.+.+|..-.+-..        .+.......|.|+.|++.+|
T Consensus       261 ~~~al~~~~p~L~vl~l~gNeIt~da~~--------~la~~~~ek~dL~kLnLngN  308 (382)
T KOG1909|consen  261 FVDALKESAPSLEVLELAGNEITRDAAL--------ALAACMAEKPDLEKLNLNGN  308 (382)
T ss_pred             HHHHHhccCCCCceeccCcchhHHHHHH--------HHHHHHhcchhhHHhcCCcc
Confidence               1 12367777777777754333221        11123344666777777766

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.97  E-value=1.3e-10  Score=100.97  Aligned_cols=186  Identities=14%  Similarity=0.123  Sum_probs=92.3

Q ss_pred             hhCCCcccEEEecccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeee--eccc
Q 048462           70 ISSLSSLQVFSWFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMAS--FLLP  147 (325)
Q Consensus        70 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~--~~l~  147 (325)
                      ...|++++.|+++.|-+     .......+....+++|+.|+++.|......+-.... ...+++.|.++.|..  ..+.
T Consensus       142 ~k~~~~v~~LdLS~NL~-----~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~-~l~~lK~L~l~~CGls~k~V~  215 (505)
T KOG3207|consen  142 SKILPNVRDLDLSRNLF-----HNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTL-LLSHLKQLVLNSCGLSWKDVQ  215 (505)
T ss_pred             hhhCCcceeecchhhhH-----HhHHHHHHHHHhcccchhcccccccccCCccccchh-hhhhhheEEeccCCCCHHHHH
Confidence            44455555555555433     112223333445555555555555433221111000 122355555553332  2222


Q ss_pred             c-cccCCCCCeEEEcCCCCceeccccCCCCCccccccccccEEEecCCCCCCc--cccccCCCCccEEEEeccCCchhhc
Q 048462          148 L-DLRMDHLETLEIDRCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTD--LKWIRYAPNLQFLYVSYCPRLSEII  224 (325)
Q Consensus       148 ~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--l~~~~~~~~L~~L~l~~~~~l~~~~  224 (325)
                      . +..+|+|+.|.+.+|...-       ....+...++.|+.|+|++++.+..  ++..+.+|+|..|+++.|. +.++.
T Consensus       216 ~~~~~fPsl~~L~L~~N~~~~-------~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tg-i~si~  287 (505)
T KOG3207|consen  216 WILLTFPSLEVLYLEANEIIL-------IKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTG-IASIA  287 (505)
T ss_pred             HHHHhCCcHHHhhhhcccccc-------eecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccC-cchhc
Confidence            2 4466777777777774320       1112224466788888887743322  2456677888888777765 33333


Q ss_pred             ccCCCCCCCccccccccCCcccEEeccCCCCcceeccC--cccCCCccEEeee
Q 048462          225 GTYESPGTSEIEESQDFFSNLMVIDLRHLPSLTSICCG--VVPFPSLQTISVN  275 (325)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~~L~~L~l~  275 (325)
                      .     -+.+.......||+|++|++..+ ++++|+..  ....++|+.+.+.
T Consensus       288 ~-----~d~~s~~kt~~f~kL~~L~i~~N-~I~~w~sl~~l~~l~nlk~l~~~  334 (505)
T KOG3207|consen  288 E-----PDVESLDKTHTFPKLEYLNISEN-NIRDWRSLNHLRTLENLKHLRIT  334 (505)
T ss_pred             C-----CCccchhhhcccccceeeecccC-ccccccccchhhccchhhhhhcc
Confidence            2     11122234567888888888876 33333332  2235666666653

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.92  E-value=3e-11  Score=100.09  Aligned_cols=114  Identities=20%  Similarity=0.158  Sum_probs=80.3

Q ss_pred             cccCCCCCeEEEcCCCCceeccccCCCCCccccccccccEEEecCCCCC-C--cccc-ccCCCCccEEEEeccCCchhhc
Q 048462          149 DLRMDHLETLEIDRCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCM-T--DLKW-IRYAPNLQFLYVSYCPRLSEII  224 (325)
Q Consensus       149 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l-~--~l~~-~~~~~~L~~L~l~~~~~l~~~~  224 (325)
                      +..+..|..|++++|......+     ..+...--++|+.|+++++.+- .  .+.. .+.+|+|.+|++++|..+++-.
T Consensus       256 ~~scs~L~~LNlsWc~l~~~~V-----tv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~  330 (419)
T KOG2120|consen  256 LSSCSRLDELNLSWCFLFTEKV-----TVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDC  330 (419)
T ss_pred             HHhhhhHhhcCchHhhccchhh-----hHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchH
Confidence            5578899999999998652111     1111134578999999998422 1  1222 2369999999999998876643


Q ss_pred             ccCCCCCCCccccccccCCcccEEeccCCCCccee-ccCcccCCCccEEeeeCCC
Q 048462          225 GTYESPGTSEIEESQDFFSNLMVIDLRHLPSLTSI-CCGVVPFPSLQTISVNGCP  278 (325)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~l~~c~  278 (325)
                      .           ..+..|+.|++|.++.|..+..- -......|+|.+|++.||-
T Consensus       331 ~-----------~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  331 F-----------QEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             H-----------HHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence            2           46678999999999999776432 2224568999999999984

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.82  E-value=2.7e-09  Score=84.22  Aligned_cols=134  Identities=18%  Similarity=0.288  Sum_probs=42.2

Q ss_pred             hhCcccCceecCCCCcccccChhhh-ccccCceeeccCCCCCeeechhhhhCCCcccEEEecccceeeeeeccCccchhh
Q 048462           22 IGKLINLCYLNLSNTRIGQLPTGIT-YLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLAE  100 (325)
Q Consensus        22 ~~~l~~L~~L~l~~~~l~~lp~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~  100 (325)
                      +.++.++++|+++++.++.+. .++ .+.+|+.|++++|.+. .++.  +..++.|+.|++++|.+       . .....
T Consensus        15 ~~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~-~l~~--l~~L~~L~~L~L~~N~I-------~-~i~~~   82 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQIT-KLEG--LPGLPRLKTLDLSNNRI-------S-SISEG   82 (175)
T ss_dssp             ----------------------S--TT-TT--EEE-TTS--S---TT------TT--EEE--SS-----------S-CHH
T ss_pred             ccccccccccccccccccccc-chhhhhcCCCEEECCCCCCc-cccC--ccChhhhhhcccCCCCC-------C-ccccc
Confidence            445557788888888776653 354 4777888888885443 3443  67778888888888877       2 22223


Q ss_pred             h-ccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccccccCCCCCeEEEcCCCCceeccccCCCCCcc
Q 048462          101 L-ESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPLDLRMDHLETLEIDRCSLESKNDYFGDQGRTR  179 (325)
Q Consensus       101 l-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~  179 (325)
                      + ..+++|++|.+++|.+..+..+                       ..+..+++|+.|++.+|+..+..-+    -.+.
T Consensus        83 l~~~lp~L~~L~L~~N~I~~l~~l-----------------------~~L~~l~~L~~L~L~~NPv~~~~~Y----R~~v  135 (175)
T PF14580_consen   83 LDKNLPNLQELYLSNNKISDLNEL-----------------------EPLSSLPKLRVLSLEGNPVCEKKNY----RLFV  135 (175)
T ss_dssp             HHHH-TT--EEE-TTS---SCCCC-----------------------GGGGG-TT--EEE-TT-GGGGSTTH----HHHH
T ss_pred             hHHhCCcCCEEECcCCcCCChHHh-----------------------HHHHcCCCcceeeccCCcccchhhH----HHHH
Confidence            3 3577888888877766544322                       2234667777777777776421100    0001


Q ss_pred             ccccccccEEEecCC
Q 048462          180 TYCFRNLRHLSVKTC  194 (325)
Q Consensus       180 ~~~~~~L~~L~l~~~  194 (325)
                      ...+|+|+.||-...
T Consensus       136 i~~lP~Lk~LD~~~V  150 (175)
T PF14580_consen  136 IYKLPSLKVLDGQDV  150 (175)
T ss_dssp             HHH-TT-SEETTEET
T ss_pred             HHHcChhheeCCEEc
Confidence            155677777765543

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.77  E-value=9.6e-09  Score=93.23  Aligned_cols=191  Identities=23%  Similarity=0.264  Sum_probs=129.7

Q ss_pred             EecCCCCCCCcCchhhhCcccCceecCCCCcccccChhhhccc-cCceeeccCCCCCeeechhhhhCCCcccEEEecccc
Q 048462            7 LDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLK-NLKILRLDGMRYLAFVPCQVISSLSSLQVFSWFSTE   85 (325)
Q Consensus         7 L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~   85 (325)
                      +++..+ .+..-+..+.....++.|++.++.+..++.....+. +|+.|+++++. ...+|.. +..+++|+.|++..|.
T Consensus        98 l~~~~~-~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~-i~~l~~~-~~~l~~L~~L~l~~N~  174 (394)
T COG4886          98 LDLNLN-RLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNK-IESLPSP-LRNLPNLKNLDLSFND  174 (394)
T ss_pred             eecccc-ccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccc-hhhhhhh-hhccccccccccCCch
Confidence            555555 443334445566778888888888888887777774 88888888843 4445444 7788888888888887


Q ss_pred             eeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccc-cccCCCCCeEEEcCCC
Q 048462           86 LVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPL-DLRMDHLETLEIDRCS  164 (325)
Q Consensus        86 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~-l~~l~~L~~L~l~~~~  164 (325)
                      +        ...+......++|+.|.++++....++...   .....|+++.+++......+. +..+.++..+.+.++.
T Consensus       175 l--------~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~---~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~  243 (394)
T COG4886         175 L--------SDLPKLLSNLSNLNNLDLSGNKISDLPPEI---ELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNK  243 (394)
T ss_pred             h--------hhhhhhhhhhhhhhheeccCCccccCchhh---hhhhhhhhhhhcCCcceecchhhhhcccccccccCCce
Confidence            6        445555557788888888888776665432   223346777777654444444 6677777777777766


Q ss_pred             CceeccccCCCCCccccccccccEEEecCCCCCCccccccCCCCccEEEEeccCCc
Q 048462          165 LESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDLKWIRYAPNLQFLYVSYCPRL  220 (325)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l  220 (325)
                      ....        .-....++++++|+++++ .+++++.++...+++.|+++++...
T Consensus       244 ~~~~--------~~~~~~l~~l~~L~~s~n-~i~~i~~~~~~~~l~~L~~s~n~~~  290 (394)
T COG4886         244 LEDL--------PESIGNLSNLETLDLSNN-QISSISSLGSLTNLRELDLSGNSLS  290 (394)
T ss_pred             eeec--------cchhccccccceeccccc-cccccccccccCccCEEeccCcccc
Confidence            5311        011145677899999888 7888877888888999988887543

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.75  E-value=7.2e-09  Score=81.83  Aligned_cols=106  Identities=28%  Similarity=0.331  Sum_probs=43.2

Q ss_pred             CCcEEecCCCCCCCcCchhhh-CcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhh-hCCCcccEEE
Q 048462            3 ALAVLDLSYNLDLVKLPEAIG-KLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVI-SSLSSLQVFS   80 (325)
Q Consensus         3 ~L~~L~l~~~~~~~~lp~~~~-~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~l~~L~~L~   80 (325)
                      +++.|+|+++ .+..+ +.++ .+.+|+.|++++|.++.+. ++..+++|++|++++|.+. .++.. + ..+++|++|+
T Consensus        20 ~~~~L~L~~n-~I~~I-e~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~-~i~~~-l~~~lp~L~~L~   94 (175)
T PF14580_consen   20 KLRELNLRGN-QISTI-ENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRIS-SISEG-LDKNLPNLQELY   94 (175)
T ss_dssp             ------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S-CHH-HHHH-TT--EEE
T ss_pred             cccccccccc-ccccc-cchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCC-ccccc-hHHhCCcCCEEE
Confidence            5789999999 88876 3465 5889999999999998885 5888999999999996554 45444 4 4699999999


Q ss_pred             ecccceeeeeeccCccchhhhccCCCcceEEEEecCccc
Q 048462           81 WFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDA  119 (325)
Q Consensus        81 l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  119 (325)
                      +++|.+.      .-.....+..+++|+.|++.+|....
T Consensus        95 L~~N~I~------~l~~l~~L~~l~~L~~L~L~~NPv~~  127 (175)
T PF14580_consen   95 LSNNKIS------DLNELEPLSSLPKLRVLSLEGNPVCE  127 (175)
T ss_dssp             -TTS---------SCCCCGGGGG-TT--EEE-TT-GGGG
T ss_pred             CcCCcCC------ChHHhHHHHcCCCcceeeccCCcccc
Confidence            9999982      22335677889999999999887653

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.73  E-value=1.4e-09  Score=90.54  Aligned_cols=221  Identities=15%  Similarity=0.124  Sum_probs=138.0

Q ss_pred             CCCcEEecCCCCC------CC--cCchhhhCcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCC
Q 048462            2 HALAVLDLSYNLD------LV--KLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSL   73 (325)
Q Consensus         2 ~~L~~L~l~~~~~------~~--~lp~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l   73 (325)
                      ..|.+|.+++...      +.  .+|-.+.-.++|..+.++.|.-+.+......-|.|+++.+..... ...|.  +-..
T Consensus       182 ~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~-~~~~~--l~pe  258 (490)
T KOG1259|consen  182 TQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTI-QDVPS--LLPE  258 (490)
T ss_pred             hheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhheeceeecCchhheeeeecccc-ccccc--ccch
Confidence            4567777776521      11  234445556788888888875444433334457788888877332 22222  1122


Q ss_pred             CcccEEEecccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccccccCC
Q 048462           74 SSLQVFSWFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPLDLRMD  153 (325)
Q Consensus        74 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~l~  153 (325)
                      .++.....+.-..      .+......+.-.+.|+++++++|.+..+..-   .++.+.++.|+++......+.+++.++
T Consensus       259 ~~~~D~~~~E~~t------~~G~~~~~~dTWq~LtelDLS~N~I~~iDES---vKL~Pkir~L~lS~N~i~~v~nLa~L~  329 (490)
T KOG1259|consen  259 TILADPSGSEPST------SNGSALVSADTWQELTELDLSGNLITQIDES---VKLAPKLRRLILSQNRIRTVQNLAELP  329 (490)
T ss_pred             hhhcCccCCCCCc------cCCceEEecchHhhhhhccccccchhhhhhh---hhhccceeEEeccccceeeehhhhhcc
Confidence            2222111111000      1222233344446678888888876654322   223334788888877777777788999


Q ss_pred             CCCeEEEcCCCCceeccccCCCCCccccccccccEEEecCCCCCCccccccCCCCccEEEEeccCCchhhcccCCCCCCC
Q 048462          154 HLETLEIDRCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDLKWIRYAPNLQFLYVSYCPRLSEIIGTYESPGTS  233 (325)
Q Consensus       154 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~  233 (325)
                      +|+.|++++|...+.      .||.  ..+-+++.|.++++ .+.+++.++.+=+|..|++++|. ++...         
T Consensus       330 ~L~~LDLS~N~Ls~~------~Gwh--~KLGNIKtL~La~N-~iE~LSGL~KLYSLvnLDl~~N~-Ie~ld---------  390 (490)
T KOG1259|consen  330 QLQLLDLSGNLLAEC------VGWH--LKLGNIKTLKLAQN-KIETLSGLRKLYSLVNLDLSSNQ-IEELD---------  390 (490)
T ss_pred             cceEeecccchhHhh------hhhH--hhhcCEeeeehhhh-hHhhhhhhHhhhhheeccccccc-hhhHH---------
Confidence            999999999876432      3444  35778999999998 88989999889999999999886 33332         


Q ss_pred             ccccccccCCcccEEeccCCC
Q 048462          234 EIEESQDFFSNLMVIDLRHLP  254 (325)
Q Consensus       234 ~~~~~~~~~~~L~~L~l~~~~  254 (325)
                       ....++.+|-|+.+.+.+++
T Consensus       391 -eV~~IG~LPCLE~l~L~~NP  410 (490)
T KOG1259|consen  391 -EVNHIGNLPCLETLRLTGNP  410 (490)
T ss_pred             -HhcccccccHHHHHhhcCCC
Confidence             23578889999999998875

>PLN03150 hypothetical protein; Provisional

Probab=98.64  E-value=8.8e-08  Score=91.51  Aligned_cols=105  Identities=24%  Similarity=0.269  Sum_probs=69.1

Q ss_pred             CcEEecCCCCCCCcCchhhhCcccCceecCCCCccc-ccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEec
Q 048462            4 LAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIG-QLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWF   82 (325)
Q Consensus         4 L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~-~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~   82 (325)
                      ++.|+|++|..-+.+|..++.+++|++|++++|.+. .+|..+..+++|+.|++++|.+.+.+|.. ++++++|+.|+++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~-l~~L~~L~~L~Ls  498 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILNLN  498 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchH-HhcCCCCCEEECc
Confidence            556777777322356777777777777777777763 66767777777777777777776677766 7777777777777


Q ss_pred             ccceeeeeeccCccchhhhccC-CCcceEEEEecC
Q 048462           83 STELVELHYVDSTSVLAELESL-ENIHDISVTLCN  116 (325)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~  116 (325)
                      +|.+       ....+..+... .++..+++.+|.
T Consensus       499 ~N~l-------~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        499 GNSL-------SGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             CCcc-------cccCChHHhhccccCceEEecCCc
Confidence            7766       45555555442 344555555553

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.61  E-value=1.7e-09  Score=97.20  Aligned_cols=147  Identities=27%  Similarity=0.388  Sum_probs=121.1

Q ss_pred             CcEEecCCCCCCCcCchhhhCcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEecc
Q 048462            4 LAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWFS   83 (325)
Q Consensus         4 L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~   83 (325)
                      |..+.+..| .+..+|..++.+..|.+++++.|.+..+|..+..|+ |+.|-+++ +..+.+|.+ ++....|.+|+.+.
T Consensus       100 Le~liLy~n-~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sN-Nkl~~lp~~-ig~~~tl~~ld~s~  175 (722)
T KOG0532|consen  100 LESLILYHN-CIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSN-NKLTSLPEE-IGLLPTLAHLDVSK  175 (722)
T ss_pred             HHHHHHHhc-cceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEec-CccccCCcc-cccchhHHHhhhhh
Confidence            445566666 677888888889999999999998888888888877 88888877 667888888 88888999999999


Q ss_pred             cceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccc-cccCCCCCeEEEcC
Q 048462           84 TELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPL-DLRMDHLETLEIDR  162 (325)
Q Consensus        84 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~-l~~l~~L~~L~l~~  162 (325)
                      |.+        ...+..++.+..|+.|.+..|....++....  .  -.|.+|++++.....+|. +..|+.|++|-+.+
T Consensus       176 nei--------~slpsql~~l~slr~l~vrRn~l~~lp~El~--~--LpLi~lDfScNkis~iPv~fr~m~~Lq~l~Len  243 (722)
T KOG0532|consen  176 NEI--------QSLPSQLGYLTSLRDLNVRRNHLEDLPEELC--S--LPLIRLDFSCNKISYLPVDFRKMRHLQVLQLEN  243 (722)
T ss_pred             hhh--------hhchHHhhhHHHHHHHHHhhhhhhhCCHHHh--C--CceeeeecccCceeecchhhhhhhhheeeeecc
Confidence            987        6788899999999999999988777644322  1  237999999888888998 99999999999999


Q ss_pred             CCCc
Q 048462          163 CSLE  166 (325)
Q Consensus       163 ~~~~  166 (325)
                      |+..
T Consensus       244 NPLq  247 (722)
T KOG0532|consen  244 NPLQ  247 (722)
T ss_pred             CCCC
Confidence            9863

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.61  E-value=3.1e-08  Score=64.27  Aligned_cols=58  Identities=36%  Similarity=0.554  Sum_probs=37.9

Q ss_pred             CCCcEEecCCCCCCCcCc-hhhhCcccCceecCCCCcccccCh-hhhccccCceeeccCCC
Q 048462            2 HALAVLDLSYNLDLVKLP-EAIGKLINLCYLNLSNTRIGQLPT-GITYLKNLKILRLDGMR   60 (325)
Q Consensus         2 ~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~l~~~~   60 (325)
                      |+|++|++++| .++.+| ..+..+++|++|++++|.++.++. .+.++++|++|++++|.
T Consensus         1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETSS-TESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            46677777777 666665 456667777777777776665544 35666777777766653

...

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.59  E-value=9.8e-09  Score=87.13  Aligned_cols=241  Identities=15%  Similarity=0.148  Sum_probs=157.8

Q ss_pred             hhhhCcccCceecCCCCccc-----ccChhhhccccCceeeccCCCCCeee----c-------hhhhhCCCcccEEEecc
Q 048462           20 EAIGKLINLCYLNLSNTRIG-----QLPTGITYLKNLKILRLDGMRYLAFV----P-------CQVISSLSSLQVFSWFS   83 (325)
Q Consensus        20 ~~~~~l~~L~~L~l~~~~l~-----~lp~~l~~l~~L~~L~l~~~~~~~~~----~-------~~~~~~l~~L~~L~l~~   83 (325)
                      +.+..+..+..+++++|.++     .+-..+.+-++|+..++++ .+.+..    |       .. +-.+++|+.|+++.
T Consensus        24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd-~ftGR~~~Ei~e~L~~l~~a-L~~~~~L~~ldLSD  101 (382)
T KOG1909|consen   24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSD-MFTGRLKDEIPEALKMLSKA-LLGCPKLQKLDLSD  101 (382)
T ss_pred             HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHh-hhcCCcHHHHHHHHHHHHHH-HhcCCceeEeeccc
Confidence            44567889999999999873     4445577788899998887 444422    2       22 55678999999999


Q ss_pred             cceeeeeeccCccchhhhccCCCcceEEEEecCccccccc-----------ccCccccCCceEEEEceeeeecccc----
Q 048462           84 TELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRV-----------KSSPKLQSCIKRLAVVLMASFLLPL----  148 (325)
Q Consensus        84 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-----------~~~~~~~~~L~~L~l~~~~~~~l~~----  148 (325)
                      |-+-   ......+..-+.++..|++|.+.+|......+-           .........|+.+.+.+.+...-+.    
T Consensus       102 NA~G---~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A  178 (382)
T KOG1909|consen  102 NAFG---PKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALA  178 (382)
T ss_pred             cccC---ccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHH
Confidence            8761   001122334466789999999999976543211           1122233458888888554443333    


Q ss_pred             --cccCCCCCeEEEcCCCCceeccccCCCCCccc--cccccccEEEecCCCCCCcc------ccccCCCCccEEEEeccC
Q 048462          149 --DLRMDHLETLEIDRCSLESKNDYFGDQGRTRT--YCFRNLRHLSVKTCPCMTDL------KWIRYAPNLQFLYVSYCP  218 (325)
Q Consensus       149 --l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~l~~l------~~~~~~~~L~~L~l~~~~  218 (325)
                        ++.++.|+.+.+..|......+     ..+..  ..+++|+.|+|.++ .++.-      ..+..+++|+.|++.+|-
T Consensus       179 ~~~~~~~~leevr~~qN~I~~eG~-----~al~eal~~~~~LevLdl~DN-tft~egs~~LakaL~s~~~L~El~l~dcl  252 (382)
T KOG1909|consen  179 EAFQSHPTLEEVRLSQNGIRPEGV-----TALAEALEHCPHLEVLDLRDN-TFTLEGSVALAKALSSWPHLRELNLGDCL  252 (382)
T ss_pred             HHHHhccccceEEEecccccCchh-----HHHHHHHHhCCcceeeecccc-hhhhHHHHHHHHHhcccchheeecccccc
Confidence              7778999999999888652111     00111  57899999999998 55542      235568899999999996


Q ss_pred             CchhhcccCCCCCCCcccc-ccccCCcccEEeccCCCCcce----eccCcccCCCccEEeeeCCCCC
Q 048462          219 RLSEIIGTYESPGTSEIEE-SQDFFSNLMVIDLRHLPSLTS----ICCGVVPFPSLQTISVNGCPSL  280 (325)
Q Consensus       219 ~l~~~~~~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~l~~----~~~~~~~~~~L~~L~l~~c~~l  280 (325)
                      .-+.        +...+.. ....+|+|+.+.+.+|..-.+    +.......|.|+.|++++| ++
T Consensus       253 l~~~--------Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN-~l  310 (382)
T KOG1909|consen  253 LENE--------GAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGN-RL  310 (382)
T ss_pred             cccc--------cHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcc-cc
Confidence            4222        1222222 234589999999999843322    2222334799999999998 44

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.57  E-value=8.3e-08  Score=87.11  Aligned_cols=170  Identities=26%  Similarity=0.340  Sum_probs=125.9

Q ss_pred             CCCcEEecCCCCCCCcCchhhhCcc-cCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEE
Q 048462            2 HALAVLDLSYNLDLVKLPEAIGKLI-NLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFS   80 (325)
Q Consensus         2 ~~L~~L~l~~~~~~~~lp~~~~~l~-~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~   80 (325)
                      +.++.|++.++ .++++|....... +|+.|+++++.+..+|..+..+++|+.|++++|. ...+|.. ....++|+.|+
T Consensus       116 ~~l~~L~l~~n-~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~-~~~~~~L~~L~  192 (394)
T COG4886         116 TNLTSLDLDNN-NITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND-LSDLPKL-LSNLSNLNNLD  192 (394)
T ss_pred             cceeEEecCCc-ccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCch-hhhhhhh-hhhhhhhhhee
Confidence            45789999999 8999998888885 9999999999999998889999999999999954 4556654 45899999999


Q ss_pred             ecccceeeeeeccCccchhhhccCCCcceEEEEecCcccc-cccccCccccCCceEEEEceeeeecccc-cccCCCCCeE
Q 048462           81 WFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAV-NRVKSSPKLQSCIKRLAVVLMASFLLPL-DLRMDHLETL  158 (325)
Q Consensus        81 l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~l~~-l~~l~~L~~L  158 (325)
                      ++++.+        ...+..+.....|+++.+.++..... ..+...    ..+..+.+.+.....++. ++.++.++.|
T Consensus       193 ls~N~i--------~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~----~~l~~l~l~~n~~~~~~~~~~~l~~l~~L  260 (394)
T COG4886         193 LSGNKI--------SDLPPEIELLSALEELDLSNNSIIELLSSLSNL----KNLSGLELSNNKLEDLPESIGNLSNLETL  260 (394)
T ss_pred             ccCCcc--------ccCchhhhhhhhhhhhhhcCCcceecchhhhhc----ccccccccCCceeeeccchhcccccccee
Confidence            999987        45555555666799999988853222 112111    124455555545445344 7788899999


Q ss_pred             EEcCCCCceeccccCCCCCccccccccccEEEecCCC
Q 048462          159 EIDRCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCP  195 (325)
Q Consensus       159 ~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  195 (325)
                      ++++|...+..      .   .....++++|++++..
T Consensus       261 ~~s~n~i~~i~------~---~~~~~~l~~L~~s~n~  288 (394)
T COG4886         261 DLSNNQISSIS------S---LGSLTNLRELDLSGNS  288 (394)
T ss_pred             ccccccccccc------c---ccccCccCEEeccCcc
Confidence            99998865321      1   2567899999999873

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.48  E-value=2.1e-07  Score=60.34  Aligned_cols=60  Identities=28%  Similarity=0.430  Sum_probs=47.3

Q ss_pred             ccCceecCCCCcccccCh-hhhccccCceeeccCCCCCeeechhhhhCCCcccEEEecccce
Q 048462           26 INLCYLNLSNTRIGQLPT-GITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWFSTEL   86 (325)
Q Consensus        26 ~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~   86 (325)
                      ++|++|++++|+++.+|. .+.++++|++|++++|... .++..++..+++|++|++++|.+
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~-~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLT-SIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSES-EEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccC-ccCHHHHcCCCCCCEEeCcCCcC
Confidence            468899999998888875 4678999999999986554 45544488899999999988763

...

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.44  E-value=2.6e-08  Score=83.12  Aligned_cols=130  Identities=19%  Similarity=0.185  Sum_probs=73.7

Q ss_pred             hhCcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEecccceeeeeeccCccchhhh
Q 048462           22 IGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLAEL  101 (325)
Q Consensus        22 ~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l  101 (325)
                      +..++.|+++|+++|.++++-.++.=.|+++.|++++|.+.. +..  +..+++|++||+++|.+        .....-=
T Consensus       280 ~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~-v~n--La~L~~L~~LDLS~N~L--------s~~~Gwh  348 (490)
T KOG1259|consen  280 ADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRT-VQN--LAELPQLQLLDLSGNLL--------AECVGWH  348 (490)
T ss_pred             cchHhhhhhccccccchhhhhhhhhhccceeEEeccccceee-ehh--hhhcccceEeecccchh--------HhhhhhH
Confidence            334556666666666666665555556666666666644332 222  55566666666666654        1111111


Q ss_pred             ccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeeccc---ccccCCCCCeEEEcCCCCc
Q 048462          102 ESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLP---LDLRMDHLETLEIDRCSLE  166 (325)
Q Consensus       102 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~---~l~~l~~L~~L~l~~~~~~  166 (325)
                      .++-+++.|.+++|.+.+..++....+    |..|++++.+.-.+.   +++++|-|+.+.+.+|+.-
T Consensus       349 ~KLGNIKtL~La~N~iE~LSGL~KLYS----LvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~  412 (490)
T KOG1259|consen  349 LKLGNIKTLKLAQNKIETLSGLRKLYS----LVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA  412 (490)
T ss_pred             hhhcCEeeeehhhhhHhhhhhhHhhhh----heeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence            244556666666665555444433332    466666654444333   3778888888888888853

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.39  E-value=5.2e-08  Score=88.86  Aligned_cols=79  Identities=32%  Similarity=0.428  Sum_probs=34.9

Q ss_pred             CCcEEecCCCCCCCcCchhhhCcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEec
Q 048462            3 ALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWF   82 (325)
Q Consensus         3 ~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~   82 (325)
                      +|.+|++.+| .+..+...+..|.+|++|++++|.++.+. ++..++.|+.|++.+|.+ ..+..  +..+++|+.+++.
T Consensus        96 ~l~~l~l~~n-~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~i-~~~~~--~~~l~~L~~l~l~  170 (414)
T KOG0531|consen   96 SLEALDLYDN-KIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNLI-SDISG--LESLKSLKLLDLS  170 (414)
T ss_pred             ceeeeecccc-chhhcccchhhhhcchheecccccccccc-chhhccchhhheeccCcc-hhccC--CccchhhhcccCC
Confidence            4444555555 44444332444555555555555444442 234444455555555322 22222  3334445555555


Q ss_pred             ccce
Q 048462           83 STEL   86 (325)
Q Consensus        83 ~~~~   86 (325)
                      ++.+
T Consensus       171 ~n~i  174 (414)
T KOG0531|consen  171 YNRI  174 (414)
T ss_pred             cchh
Confidence            5444

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.36  E-value=1.1e-07  Score=79.40  Aligned_cols=203  Identities=15%  Similarity=0.106  Sum_probs=102.0

Q ss_pred             EEecCCCCCCCcC---chhhhCcccCceecCCCCccc---ccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEE
Q 048462            6 VLDLSYNLDLVKL---PEAIGKLINLCYLNLSNTRIG---QLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVF   79 (325)
Q Consensus         6 ~L~l~~~~~~~~l---p~~~~~l~~L~~L~l~~~~l~---~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L   79 (325)
                      .|.+.+| .+...   ...-..+.+++.+++.+|.+.   ++...+.+||.|++|+++.|.....+... -....+|+.|
T Consensus        49 llvln~~-~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~l-p~p~~nl~~l  126 (418)
T KOG2982|consen   49 LLVLNGS-IIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSL-PLPLKNLRVL  126 (418)
T ss_pred             hheecCC-CCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccC-cccccceEEE
Confidence            4455555 44432   122335778888888888773   55555678888888888887655443321 1245678888


Q ss_pred             EecccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccc-cCccccCCceEEEEceeeeecccc----cccCCC
Q 048462           80 SWFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVK-SSPKLQSCIKRLAVVLMASFLLPL----DLRMDH  154 (325)
Q Consensus        80 ~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~l~~----l~~l~~  154 (325)
                      -+.++.+      .....-..+..+|.+++|+++.|....+..-. .+......+++++..+|....+..    ..-+|+
T Consensus       127 VLNgT~L------~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpn  200 (418)
T KOG2982|consen  127 VLNGTGL------SWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPN  200 (418)
T ss_pred             EEcCCCC------ChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhccc
Confidence            8887765      12334445666777777777776432211000 000011123444444332221111    113456


Q ss_pred             CCeEEEcCCCCceeccccCCCCCccccccccccEEEecCCCCCCcc---ccccCCCCccEEEEeccCCchhh
Q 048462          155 LETLEIDRCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDL---KWIRYAPNLQFLYVSYCPRLSEI  223 (325)
Q Consensus       155 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l---~~~~~~~~L~~L~l~~~~~l~~~  223 (325)
                      +..+.+..|+.-+...+   .++   ..++.+..|+++.. ++.++   ..+..+|.|..|.+.+++..+.+
T Consensus       201 v~sv~v~e~PlK~~s~e---k~s---e~~p~~~~LnL~~~-~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l  265 (418)
T KOG2982|consen  201 VNSVFVCEGPLKTESSE---KGS---EPFPSLSCLNLGAN-NIDSWASVDALNGFPQLVDLRVSENPLSDPL  265 (418)
T ss_pred             chheeeecCcccchhhc---ccC---CCCCcchhhhhccc-ccccHHHHHHHcCCchhheeeccCCcccccc
Confidence            66666655543211100   011   22344445555544 44443   23445566666666666655444

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.35  E-value=2.9e-08  Score=89.38  Aligned_cols=170  Identities=21%  Similarity=0.224  Sum_probs=116.2

Q ss_pred             cccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEecccceeeeeeccCccchhhhccC
Q 048462           25 LINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLAELESL  104 (325)
Q Consensus        25 l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l  104 (325)
                      +.--...+++.|++.++|.....+..|+.+.+..| ....+|.. +.++..|..++++.|++        ...+..++.+
T Consensus        74 ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n-~~r~ip~~-i~~L~~lt~l~ls~Nql--------S~lp~~lC~l  143 (722)
T KOG0532|consen   74 LTDTVFADLSRNRFSELPEEACAFVSLESLILYHN-CIRTIPEA-ICNLEALTFLDLSSNQL--------SHLPDGLCDL  143 (722)
T ss_pred             ccchhhhhccccccccCchHHHHHHHHHHHHHHhc-cceecchh-hhhhhHHHHhhhccchh--------hcCChhhhcC
Confidence            33445567777777778877777777777777773 34455655 77788888888888776        5566667666


Q ss_pred             CCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccc-cccCCCCCeEEEcCCCCceeccccCCCCCcccccc
Q 048462          105 ENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPL-DLRMDHLETLEIDRCSLESKNDYFGDQGRTRTYCF  183 (325)
Q Consensus       105 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~  183 (325)
                      + |+.|-+++|+....+.-..   ....+..|+.+.++...+|+ ++++..|+.|.+..|...+...+.        . .
T Consensus       144 p-Lkvli~sNNkl~~lp~~ig---~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El--------~-~  210 (722)
T KOG0532|consen  144 P-LKVLIVSNNKLTSLPEEIG---LLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEEL--------C-S  210 (722)
T ss_pred             c-ceeEEEecCccccCCcccc---cchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHH--------h-C
Confidence            6 7777777777665543222   33346777777777777777 888888888888888764221111        1 2


Q ss_pred             ccccEEEecCCCCCCcccc-ccCCCCccEEEEeccC
Q 048462          184 RNLRHLSVKTCPCMTDLKW-IRYAPNLQFLYVSYCP  218 (325)
Q Consensus       184 ~~L~~L~l~~~~~l~~l~~-~~~~~~L~~L~l~~~~  218 (325)
                      -.|..|+++.+ ++..+|. ++++.+|++|.|.+|+
T Consensus       211 LpLi~lDfScN-kis~iPv~fr~m~~Lq~l~LenNP  245 (722)
T KOG0532|consen  211 LPLIRLDFSCN-KISYLPVDFRKMRHLQVLQLENNP  245 (722)
T ss_pred             CceeeeecccC-ceeecchhhhhhhhheeeeeccCC
Confidence            24777788777 7887774 6678888888888887

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.34  E-value=9e-08  Score=78.85  Aligned_cols=240  Identities=17%  Similarity=0.141  Sum_probs=148.5

Q ss_pred             CCCCcEEecCCCCCCC-----cCchhhhCcccCceecCCCCcc----cccCh-------hhhccccCceeeccCCCCCee
Q 048462            1 MHALAVLDLSYNLDLV-----KLPEAIGKLINLCYLNLSNTRI----GQLPT-------GITYLKNLKILRLDGMRYLAF   64 (325)
Q Consensus         1 ~~~L~~L~l~~~~~~~-----~lp~~~~~l~~L~~L~l~~~~l----~~lp~-------~l~~l~~L~~L~l~~~~~~~~   64 (325)
                      +..+..++|||| .++     .+...+.+-++|+..+++.-..    .+++.       .+-+||+|+..++++|-+...
T Consensus        29 ~d~~~evdLSGN-tigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~  107 (388)
T COG5238          29 MDELVEVDLSGN-TIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE  107 (388)
T ss_pred             hcceeEEeccCC-cccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence            356788999999 666     3444566677888888876422    24444       357899999999999988776


Q ss_pred             echh---hhhCCCcccEEEecccceeeeeeccCc------cchhhhccCCCcceEEEEecCccccc--ccccCccccCCc
Q 048462           65 VPCQ---VISSLSSLQVFSWFSTELVELHYVDST------SVLAELESLENIHDISVTLCNVDAVN--RVKSSPKLQSCI  133 (325)
Q Consensus        65 ~~~~---~~~~l~~L~~L~l~~~~~~~~~~~~~~------~~~~~l~~l~~L~~L~l~~~~~~~~~--~~~~~~~~~~~L  133 (325)
                      .|..   .++.-..|.+|.+.+|+.-++--....      ...+-...-|.|+.+....|+.....  .+.........|
T Consensus       108 ~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~l  187 (388)
T COG5238         108 FPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENL  187 (388)
T ss_pred             cchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCc
Confidence            6632   267788999999999987211000000      01112334578999988888755332  222223333567


Q ss_pred             eEEEEc--eeeeec-----ccccccCCCCCeEEEcCCCCceeccccCCCCCccc--cccccccEEEecCCCCCCccc---
Q 048462          134 KRLAVV--LMASFL-----LPLDLRMDHLETLEIDRCSLESKNDYFGDQGRTRT--YCFRNLRHLSVKTCPCMTDLK---  201 (325)
Q Consensus       134 ~~L~l~--~~~~~~-----l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~l~~l~---  201 (325)
                      +.+.+.  ++++..     +-.+..+.+|+.|++++|-+...+.     ..+..  ..++.|+.|.+.+| -++.-.   
T Consensus       188 k~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS-----~~La~al~~W~~lrEL~lnDC-lls~~G~~~  261 (388)
T COG5238         188 KEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGS-----RYLADALCEWNLLRELRLNDC-LLSNEGVKS  261 (388)
T ss_pred             eeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhH-----HHHHHHhcccchhhhccccch-hhccccHHH
Confidence            888777  344332     2236678999999999988752110     00111  34677999999999 554311   


Q ss_pred             ---cc--cCCCCccEEEEeccCCchhhcccCCCCCCCccc-cccccCCcccEEeccCC
Q 048462          202 ---WI--RYAPNLQFLYVSYCPRLSEIIGTYESPGTSEIE-ESQDFFSNLMVIDLRHL  253 (325)
Q Consensus       202 ---~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~L~~L~l~~~  253 (325)
                         .+  ...|+|..|...++..-..+...      ...+ ..-+.+|-|..|.+.|+
T Consensus       262 v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~------~~l~~~e~~~~p~L~~le~ngN  313 (388)
T COG5238         262 VLRRFNEKFVPNLMPLPGDYNERRGGIILD------ISLNEFEQDAVPLLVDLERNGN  313 (388)
T ss_pred             HHHHhhhhcCCCccccccchhhhcCceeee------echhhhhhcccHHHHHHHHccC
Confidence               11  14788999988888754444321      0111 12246777777877775

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.29  E-value=4.4e-08  Score=89.31  Aligned_cols=147  Identities=18%  Similarity=0.183  Sum_probs=90.5

Q ss_pred             CCcEEecCCCCCCCcCchhhhCcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEec
Q 048462            3 ALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWF   82 (325)
Q Consensus         3 ~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~   82 (325)
                      .++.++++.+ .++.+-..+..+++|..+++.++.++.+...+..+++|++|++++|. ++.+..  +..+..|+.|++.
T Consensus        73 ~l~~l~l~~n-~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~-I~~i~~--l~~l~~L~~L~l~  148 (414)
T KOG0531|consen   73 SLKELNLRQN-LIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNK-ITKLEG--LSTLTLLKELNLS  148 (414)
T ss_pred             hHHhhccchh-hhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccc-cccccc--hhhccchhhheec
Confidence            3455556666 56654444777888888888888887776557788888888888844 444443  6677778888888


Q ss_pred             ccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccccccCCCCCeEEEcC
Q 048462           83 STELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPLDLRMDHLETLEIDR  162 (325)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~l~~L~~L~l~~  162 (325)
                      +|.+         ..+..+..++.|+.+++.++....++...  ......++.+.+.+.....+..+..+..+..+++..
T Consensus       149 ~N~i---------~~~~~~~~l~~L~~l~l~~n~i~~ie~~~--~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~  217 (414)
T KOG0531|consen  149 GNLI---------SDISGLESLKSLKLLDLSYNRIVDIENDE--LSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLD  217 (414)
T ss_pred             cCcc---------hhccCCccchhhhcccCCcchhhhhhhhh--hhhccchHHHhccCCchhcccchHHHHHHHHhhccc
Confidence            8876         33445555777888888888766654420  112223555555544433333333333343334444


Q ss_pred             CC
Q 048462          163 CS  164 (325)
Q Consensus       163 ~~  164 (325)
                      +.
T Consensus       218 n~  219 (414)
T KOG0531|consen  218 NK  219 (414)
T ss_pred             cc
Confidence            43

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=98.27  E-value=9.6e-08  Score=88.86  Aligned_cols=41  Identities=17%  Similarity=0.310  Sum_probs=25.7

Q ss_pred             CCcccEEeccCCCCcceeccCccc--CCCccEEeeeCCCCCCC
Q 048462          242 FSNLMVIDLRHLPSLTSICCGVVP--FPSLQTISVNGCPSLRK  282 (325)
Q Consensus       242 ~~~L~~L~l~~~~~l~~~~~~~~~--~~~L~~L~l~~c~~l~~  282 (325)
                      +..++.|++..|...+.-......  +..++.+++.+|+.++.
T Consensus       400 ~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~  442 (482)
T KOG1947|consen  400 SDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITL  442 (482)
T ss_pred             CCccceEecccCccccccchHHHhhhhhccccCCccCcccccc
Confidence            344788888888655543222111  66778888888877763

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.27  E-value=9.1e-07  Score=52.83  Aligned_cols=40  Identities=43%  Similarity=0.577  Sum_probs=27.3

Q ss_pred             CCCcEEecCCCCCCCcCchhhhCcccCceecCCCCcccccC
Q 048462            2 HALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLP   42 (325)
Q Consensus         2 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp   42 (325)
                      ++|++|++++| .++.+|+.+++|++|++|++++|.++.++
T Consensus         1 ~~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N~i~~i~   40 (44)
T PF12799_consen    1 KNLEELDLSNN-QITDLPPELSNLPNLETLNLSNNPISDIS   40 (44)
T ss_dssp             TT-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred             CcceEEEccCC-CCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence            46777777777 67777766777777777777777766553

...

>PLN03150 hypothetical protein; Provisional

Probab=98.19  E-value=4.5e-06  Score=79.93  Aligned_cols=83  Identities=22%  Similarity=0.358  Sum_probs=61.1

Q ss_pred             CceecCCCCcc-cccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEecccceeeeeeccCccchhhhccCCC
Q 048462           28 LCYLNLSNTRI-GQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLAELESLEN  106 (325)
Q Consensus        28 L~~L~l~~~~l-~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~  106 (325)
                      ++.|+++++.+ +.+|..+.++++|+.|++++|.+.+.+|.. +..+++|+.|++++|.+       ....+..++.+++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~-~~~l~~L~~LdLs~N~l-------sg~iP~~l~~L~~  491 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPS-LGSITSLEVLDLSYNSF-------NGSIPESLGQLTS  491 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChH-HhCCCCCCEEECCCCCC-------CCCCchHHhcCCC
Confidence            66777777776 367777777777888888777777777766 77777788888777776       5566777777777


Q ss_pred             cceEEEEecCcc
Q 048462          107 IHDISVTLCNVD  118 (325)
Q Consensus       107 L~~L~l~~~~~~  118 (325)
                      |+.|++++|...
T Consensus       492 L~~L~Ls~N~l~  503 (623)
T PLN03150        492 LRILNLNGNSLS  503 (623)
T ss_pred             CCEEECcCCccc
Confidence            777777777544

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.08  E-value=2.6e-05  Score=69.45  Aligned_cols=55  Identities=16%  Similarity=0.222  Sum_probs=33.6

Q ss_pred             CcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEeccc
Q 048462           24 KLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWFST   84 (325)
Q Consensus        24 ~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~   84 (325)
                      .|.++++|++++|.++.+|.   --.+|+.|.+++|.....+|.. +  ..+|+.|++.+|
T Consensus        50 ~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~-L--P~nLe~L~Ls~C  104 (426)
T PRK15386         50 EARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGS-I--PEGLEKLTVCHC  104 (426)
T ss_pred             HhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCch-h--hhhhhheEccCc
Confidence            45667777777776666662   1224777777766666666543 3  246677777766

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.02  E-value=2.3e-06  Score=81.97  Aligned_cols=107  Identities=25%  Similarity=0.308  Sum_probs=70.7

Q ss_pred             CCcEEecCCCCCCCcC-chhhhC-cccCceecCCCCcc--cccChhhhccccCceeeccCCCCCeeechhhhhCCCcccE
Q 048462            3 ALAVLDLSYNLDLVKL-PEAIGK-LINLCYLNLSNTRI--GQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQV   78 (325)
Q Consensus         3 ~L~~L~l~~~~~~~~l-p~~~~~-l~~L~~L~l~~~~l--~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~   78 (325)
                      +|+.||++|...+..- |..++. +|.|++|.+++-.+  +++.....++|+|..||+++++ ++.+ .+ ++.+++|+.
T Consensus       123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl-~G-IS~LknLq~  199 (699)
T KOG3665|consen  123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNL-SG-ISRLKNLQV  199 (699)
T ss_pred             hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCc-HH-HhccccHHH
Confidence            5788888886433322 444443 68888888887654  3444445678888888888843 3444 44 888888888


Q ss_pred             EEecccceeeeeeccCccchhhhccCCCcceEEEEecCcc
Q 048462           79 FSWFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVD  118 (325)
Q Consensus        79 L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  118 (325)
                      |.+.+-.+      .......++..+++|+.|+|+.....
T Consensus       200 L~mrnLe~------e~~~~l~~LF~L~~L~vLDIS~~~~~  233 (699)
T KOG3665|consen  200 LSMRNLEF------ESYQDLIDLFNLKKLRVLDISRDKNN  233 (699)
T ss_pred             HhccCCCC------CchhhHHHHhcccCCCeeeccccccc
Confidence            88887665      12245667777888888888766543

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=98.00  E-value=5.2e-07  Score=83.95  Aligned_cols=213  Identities=18%  Similarity=0.216  Sum_probs=96.4

Q ss_pred             ccccCceeeccCCCCCee--echhhhhCCCcccEEEeccc-ceeeeeeccCccchhhhccCCCcceEEEEecCccccccc
Q 048462           47 YLKNLKILRLDGMRYLAF--VPCQVISSLSSLQVFSWFST-ELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRV  123 (325)
Q Consensus        47 ~l~~L~~L~l~~~~~~~~--~~~~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~  123 (325)
                      .++.|+.+.+.+|.....  +-.. ...+++|+.|++..+ ....   ............+++|+.+++.++.......+
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l  261 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDAL-ALKCPNLEELDLSGCCLLIT---LSPLLLLLLLSICRKLKSLDLSGCGLVTDIGL  261 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHH-HhhCchhheecccCcccccc---cchhHhhhhhhhcCCcCccchhhhhccCchhH
Confidence            356666666666554443  2222 455666666666652 1100   00001112333446666666666653333333


Q ss_pred             ccCccccCCceEEEEceeeee---cccc-cccCCCCCeEEEcCCCCc-eeccccCCCCCccccccccccEEEecCCC---
Q 048462          124 KSSPKLQSCIKRLAVVLMASF---LLPL-DLRMDHLETLEIDRCSLE-SKNDYFGDQGRTRTYCFRNLRHLSVKTCP---  195 (325)
Q Consensus       124 ~~~~~~~~~L~~L~l~~~~~~---~l~~-l~~l~~L~~L~l~~~~~~-~~~~~~~~~~~~~~~~~~~L~~L~l~~~~---  195 (325)
                      ......++.|+.|.+.++..+   .+.. ...+++|++|++++|..+ +..+    ...  ...+++|+.+.+..+.   
T Consensus       262 ~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l----~~~--~~~c~~l~~l~~~~~~~c~  335 (482)
T KOG1947|consen  262 SALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGL----EAL--LKNCPNLRELKLLSLNGCP  335 (482)
T ss_pred             HHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHH----HHH--HHhCcchhhhhhhhcCCCc
Confidence            333333445666665544432   2333 445677888888877765 1111    001  1235555554443332   


Q ss_pred             CCCcccc--ccCCC--CccEEEEeccCCchhhcccCCCCCCCccccccccCCccc-EEeccCCCCc-ceeccCcccCCCc
Q 048462          196 CMTDLKW--IRYAP--NLQFLYVSYCPRLSEIIGTYESPGTSEIEESQDFFSNLM-VIDLRHLPSL-TSICCGVVPFPSL  269 (325)
Q Consensus       196 ~l~~l~~--~~~~~--~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~l-~~~~~~~~~~~~L  269 (325)
                      .+++...  .....  .+..+.+.+|+.+++....           ..+ ..... .+.+.+|+.+ ..+......+..+
T Consensus       336 ~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~-----------~~~-~~~~~~~~~l~gc~~l~~~l~~~~~~~~~l  403 (482)
T KOG1947|consen  336 SLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLS-----------YCG-ISDLGLELSLRGCPNLTESLELRLCRSDSL  403 (482)
T ss_pred             cHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhh-----------hhh-ccCcchHHHhcCCcccchHHHHHhccCCcc
Confidence            2332211  11111  3444444455444443320           111 11111 4556666666 2333223334448


Q ss_pred             cEEeeeCCCCCC
Q 048462          270 QTISVNGCPSLR  281 (325)
Q Consensus       270 ~~L~l~~c~~l~  281 (325)
                      +.|++..|...+
T Consensus       404 ~~L~l~~~~~~t  415 (482)
T KOG1947|consen  404 RVLNLSDCRLVT  415 (482)
T ss_pred             ceEecccCcccc
Confidence            888888886665

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.98  E-value=1.6e-06  Score=83.08  Aligned_cols=83  Identities=22%  Similarity=0.175  Sum_probs=45.3

Q ss_pred             cCCCCCeEEEcCCCCceeccccCCCCCccc--cccccccEEEecCCCCCCccccccCCCCccEEEEeccCCchhhcccCC
Q 048462          151 RMDHLETLEIDRCSLESKNDYFGDQGRTRT--YCFRNLRHLSVKTCPCMTDLKWIRYAPNLQFLYVSYCPRLSEIIGTYE  228 (325)
Q Consensus       151 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~  228 (325)
                      .+|.|++|.+.+-....        +.+..  .+||+|..||++++ +++.+..+..+++|+.|.+.+-+....      
T Consensus       146 ~LPsL~sL~i~~~~~~~--------~dF~~lc~sFpNL~sLDIS~T-nI~nl~GIS~LknLq~L~mrnLe~e~~------  210 (699)
T KOG3665|consen  146 MLPSLRSLVISGRQFDN--------DDFSQLCASFPNLRSLDISGT-NISNLSGISRLKNLQVLSMRNLEFESY------  210 (699)
T ss_pred             hCcccceEEecCceecc--------hhHHHHhhccCccceeecCCC-CccCcHHHhccccHHHHhccCCCCCch------
Confidence            45667777766654431        11111  46677777777777 666666666666666666655432210      


Q ss_pred             CCCCCccccccccCCcccEEeccCC
Q 048462          229 SPGTSEIEESQDFFSNLMVIDLRHL  253 (325)
Q Consensus       229 ~~~~~~~~~~~~~~~~L~~L~l~~~  253 (325)
                           .....+-.+.+|+.||++.-
T Consensus       211 -----~~l~~LF~L~~L~vLDIS~~  230 (699)
T KOG3665|consen  211 -----QDLIDLFNLKKLRVLDISRD  230 (699)
T ss_pred             -----hhHHHHhcccCCCeeecccc
Confidence                 00123345666666666653

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.93  E-value=6e-05  Score=67.22  Aligned_cols=70  Identities=20%  Similarity=0.229  Sum_probs=43.0

Q ss_pred             CCCcEEecCCCCCCCcCchhhhCcccCceecCCCC-cccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEE
Q 048462            2 HALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNT-RIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFS   80 (325)
Q Consensus         2 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~-~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~   80 (325)
                      ++++.|++++| .++.+|. +  -.+|++|.+++| .++.+|..+  ..+|++|++++|.....+|.       +|+.|+
T Consensus        52 ~~l~~L~Is~c-~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~-------sLe~L~  118 (426)
T PRK15386         52 RASGRLYIKDC-DIESLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE-------SVRSLE  118 (426)
T ss_pred             cCCCEEEeCCC-CCcccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc-------ccceEE
Confidence            56777777777 6777762 1  135777777776 456666544  24677777777655444443       255565


Q ss_pred             eccc
Q 048462           81 WFST   84 (325)
Q Consensus        81 l~~~   84 (325)
                      +..+
T Consensus       119 L~~n  122 (426)
T PRK15386        119 IKGS  122 (426)
T ss_pred             eCCC
Confidence            5543

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.92  E-value=3.3e-06  Score=70.71  Aligned_cols=195  Identities=18%  Similarity=0.178  Sum_probs=103.5

Q ss_pred             CCCcEEecCCCCCCCc---CchhhhCcccCceecCCCCcc----cccChhhhccccCceeeccCCCCCeeechhhhhCCC
Q 048462            2 HALAVLDLSYNLDLVK---LPEAIGKLINLCYLNLSNTRI----GQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLS   74 (325)
Q Consensus         2 ~~L~~L~l~~~~~~~~---lp~~~~~l~~L~~L~l~~~~l----~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~   74 (325)
                      .+++.+||.+| .+.+   +-..+.+|++|++|+++.|.+    +.+|   ....+|+.|-+.+......-.......++
T Consensus        71 ~~v~elDL~~N-~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p~~nl~~lVLNgT~L~w~~~~s~l~~lP  146 (418)
T KOG2982|consen   71 TDVKELDLTGN-LISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP---LPLKNLRVLVLNGTGLSWTQSTSSLDDLP  146 (418)
T ss_pred             hhhhhhhcccc-hhccHHHHHHHHhcCccceEeeccCCcCCCccccCc---ccccceEEEEEcCCCCChhhhhhhhhcch
Confidence            56788999999 6663   444566899999999998865    3444   34668888888885444333333266788


Q ss_pred             cccEEEecccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccc---ccc
Q 048462           75 SLQVFSWFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPL---DLR  151 (325)
Q Consensus        75 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~---l~~  151 (325)
                      .++.|.++.|....+...  ..-...  --+.+.+++...|..............-+++..+.+..+......+   ...
T Consensus       147 ~vtelHmS~N~~rq~n~D--d~c~e~--~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~  222 (418)
T KOG2982|consen  147 KVTELHMSDNSLRQLNLD--DNCIED--WSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEP  222 (418)
T ss_pred             hhhhhhhccchhhhhccc--cccccc--cchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCC
Confidence            888888888744111000  000000  1123444444444322211111111112223333333221111111   334


Q ss_pred             CCCCCeEEEcCCCCceeccccCCCCCccc---cccccccEEEecCCCCCCcccc-------ccCCCCccEEE
Q 048462          152 MDHLETLEIDRCSLESKNDYFGDQGRTRT---YCFRNLRHLSVKTCPCMTDLKW-------IRYAPNLQFLY  213 (325)
Q Consensus       152 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~l~~l~~-------~~~~~~L~~L~  213 (325)
                      +|.+..|++..+..         .+|...   ..|+.|..|.+.+.|-+..+..       ++.+++++.|+
T Consensus       223 ~p~~~~LnL~~~~i---------dswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLN  285 (418)
T KOG2982|consen  223 FPSLSCLNLGANNI---------DSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLN  285 (418)
T ss_pred             CCcchhhhhccccc---------ccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEec
Confidence            56666677766654         233222   6789999998888865444322       33456666554

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.90  E-value=1.6e-05  Score=47.48  Aligned_cols=36  Identities=39%  Similarity=0.492  Sum_probs=27.3

Q ss_pred             ccCceecCCCCcccccChhhhccccCceeeccCCCC
Q 048462           26 INLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRY   61 (325)
Q Consensus        26 ~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~   61 (325)
                      ++|++|++++|+++.+|..+.+|++|++|++++|.+
T Consensus         1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i   36 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPI   36 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCC
T ss_pred             CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCC
Confidence            468888888888888887788888888888888643

...

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.74  E-value=5e-07  Score=83.92  Aligned_cols=108  Identities=13%  Similarity=0.136  Sum_probs=75.8

Q ss_pred             hhCCCcccEEEecccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeeccccc
Q 048462           70 ISSLSSLQVFSWFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPLD  149 (325)
Q Consensus        70 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l  149 (325)
                      +.-++.|++|+++.|+.         .....+..+++|++|++++|....++.+....   ..|..|.++|..-..+-.+
T Consensus       183 Lqll~ale~LnLshNk~---------~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~g---c~L~~L~lrnN~l~tL~gi  250 (1096)
T KOG1859|consen  183 LQLLPALESLNLSHNKF---------TKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVG---CKLQLLNLRNNALTTLRGI  250 (1096)
T ss_pred             HHHHHHhhhhccchhhh---------hhhHHHHhcccccccccccchhccccccchhh---hhheeeeecccHHHhhhhH
Confidence            45567788888888876         22336777888888888888877766554332   2378888888777777778


Q ss_pred             ccCCCCCeEEEcCCCCceeccccCCCCCccccccccccEEEecCCC
Q 048462          150 LRMDHLETLEIDRCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCP  195 (325)
Q Consensus       150 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  195 (325)
                      .++++|+.|++++|-..+.      ....|...+..|+.|+|.+++
T Consensus       251 e~LksL~~LDlsyNll~~h------seL~pLwsLs~L~~L~LeGNP  290 (1096)
T KOG1859|consen  251 ENLKSLYGLDLSYNLLSEH------SELEPLWSLSSLIVLWLEGNP  290 (1096)
T ss_pred             HhhhhhhccchhHhhhhcc------hhhhHHHHHHHHHHHhhcCCc
Confidence            8889999999988875421      111222456778888888874

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.66  E-value=1e-06  Score=81.96  Aligned_cols=87  Identities=24%  Similarity=0.317  Sum_probs=38.2

Q ss_pred             hhhhCcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEecccceeeeeeccCccchh
Q 048462           20 EAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLA   99 (325)
Q Consensus        20 ~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~   99 (325)
                      .++.-++.|+.|+++.|+++... .+..|++|++||+++| ....+|......++ |+.|.+++|.+         .-..
T Consensus       181 ~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc~-L~~L~lrnN~l---------~tL~  248 (1096)
T KOG1859|consen  181 ESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYN-CLRHVPQLSMVGCK-LQLLNLRNNAL---------TTLR  248 (1096)
T ss_pred             HHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccc-hhccccccchhhhh-heeeeecccHH---------Hhhh
Confidence            33444455555555555554432 4455555555555552 23333321122233 45555554433         2233


Q ss_pred             hhccCCCcceEEEEecCcc
Q 048462          100 ELESLENIHDISVTLCNVD  118 (325)
Q Consensus       100 ~l~~l~~L~~L~l~~~~~~  118 (325)
                      .+.++++|+.|++++|-+.
T Consensus       249 gie~LksL~~LDlsyNll~  267 (1096)
T KOG1859|consen  249 GIENLKSLYGLDLSYNLLS  267 (1096)
T ss_pred             hHHhhhhhhccchhHhhhh
Confidence            3444444555555444433

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.58  E-value=8.1e-06  Score=60.64  Aligned_cols=105  Identities=19%  Similarity=0.251  Sum_probs=77.1

Q ss_pred             CcEEecCCCCCCCcCchh---hhCcccCceecCCCCcccccChhhh-ccccCceeeccCCCCCeeechhhhhCCCcccEE
Q 048462            4 LAVLDLSYNLDLVKLPEA---IGKLINLCYLNLSNTRIGQLPTGIT-YLKNLKILRLDGMRYLAFVPCQVISSLSSLQVF   79 (325)
Q Consensus         4 L~~L~l~~~~~~~~lp~~---~~~l~~L~~L~l~~~~l~~lp~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L   79 (325)
                      +-.++|+.| .+..+++.   +.+..+|...++++|.++.+|..+. +++-++++++.+ +.+..+|.+ +..++.|+.|
T Consensus        29 ~h~ldLssc-~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~-neisdvPeE-~Aam~aLr~l  105 (177)
T KOG4579|consen   29 LHFLDLSSC-QLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLAN-NEISDVPEE-LAAMPALRSL  105 (177)
T ss_pred             hhhcccccc-hhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcch-hhhhhchHH-HhhhHHhhhc
Confidence            346788888 66666554   4456677778889988888887764 466888888888 556678888 8888999999


Q ss_pred             EecccceeeeeeccCccchhhhccCCCcceEEEEecCccc
Q 048462           80 SWFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDA  119 (325)
Q Consensus        80 ~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  119 (325)
                      +++.|.+        ...+..+..+.++..|+..++....
T Consensus       106 Nl~~N~l--------~~~p~vi~~L~~l~~Lds~~na~~e  137 (177)
T KOG4579|consen  106 NLRFNPL--------NAEPRVIAPLIKLDMLDSPENARAE  137 (177)
T ss_pred             ccccCcc--------ccchHHHHHHHhHHHhcCCCCcccc
Confidence            9988887        4556666667777777776665443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.56  E-value=0.00015  Score=57.53  Aligned_cols=106  Identities=14%  Similarity=0.082  Sum_probs=76.6

Q ss_pred             CceEEEEceeeeecccccccCCCCCeEEEcCCCCceeccccCCCCCccccccccccEEEecCC--CCCCccccccCCCCc
Q 048462          132 CIKRLAVVLMASFLLPLDLRMDHLETLEIDRCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTC--PCMTDLKWIRYAPNL  209 (325)
Q Consensus       132 ~L~~L~l~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~--~~l~~l~~~~~~~~L  209 (325)
                      ....+++++.....++.+..+++|.+|.+.+|....+.-     +.-  ..+++|..|.+.++  ..+.++..++.+|.|
T Consensus        43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p-----~L~--~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L  115 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDP-----DLD--TFLPNLKTLILTNNSIQELGDLDPLASCPKL  115 (233)
T ss_pred             ccceecccccchhhcccCCCccccceEEecCCcceeecc-----chh--hhccccceEEecCcchhhhhhcchhccCCcc
Confidence            356777887777777778899999999999999764321     111  35788999999986  244456678889999


Q ss_pred             cEEEEeccCCchhhcccCCCCCCCccccccccCCcccEEeccCC
Q 048462          210 QFLYVSYCPRLSEIIGTYESPGTSEIEESQDFFSNLMVIDLRHL  253 (325)
Q Consensus       210 ~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  253 (325)
                      ++|.+-+++.-+.-.= .        ...+..+|+|+.||+.+.
T Consensus       116 ~~Ltll~Npv~~k~~Y-R--------~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  116 EYLTLLGNPVEHKKNY-R--------LYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             ceeeecCCchhcccCc-e--------eEEEEecCcceEeehhhh
Confidence            9999999885332210 0        025677999999999875

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.38  E-value=1.8e-05  Score=65.75  Aligned_cols=103  Identities=18%  Similarity=0.120  Sum_probs=74.2

Q ss_pred             CCcEEecCCCCCCCcCchhhhCcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEec
Q 048462            3 ALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWF   82 (325)
Q Consensus         3 ~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~   82 (325)
                      +.+.|+.+|| +++++ ....+|+.|+.|.|+-|++..+-. +.+|++|++|++..|.+.....-+-++++++|+.|-+.
T Consensus        20 ~vkKLNcwg~-~L~DI-sic~kMp~lEVLsLSvNkIssL~p-l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~   96 (388)
T KOG2123|consen   20 NVKKLNCWGC-GLDDI-SICEKMPLLEVLSLSVNKISSLAP-LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLD   96 (388)
T ss_pred             HhhhhcccCC-CccHH-HHHHhcccceeEEeeccccccchh-HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhc
Confidence            5678999999 88887 457789999999999999988744 89999999999999765543332227889999999888


Q ss_pred             ccceeeeeeccCcc-chhhhccCCCcceEE
Q 048462           83 STELVELHYVDSTS-VLAELESLENIHDIS  111 (325)
Q Consensus        83 ~~~~~~~~~~~~~~-~~~~l~~l~~L~~L~  111 (325)
                      .|.-..   ..... -...+.-+++|+.|+
T Consensus        97 ENPCc~---~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   97 ENPCCG---EAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             cCCccc---ccchhHHHHHHHHcccchhcc
Confidence            865410   00001 123456677777775

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.05  E-value=0.00075  Score=56.24  Aligned_cols=242  Identities=13%  Similarity=0.094  Sum_probs=135.5

Q ss_pred             hhhhCcccCceecCCCCccc-----ccChhhhccccCceeeccCCCCCeee-----------chhhhhCCCcccEEEecc
Q 048462           20 EAIGKLINLCYLNLSNTRIG-----QLPTGITYLKNLKILRLDGMRYLAFV-----------PCQVISSLSSLQVFSWFS   83 (325)
Q Consensus        20 ~~~~~l~~L~~L~l~~~~l~-----~lp~~l~~l~~L~~L~l~~~~~~~~~-----------~~~~~~~l~~L~~L~l~~   83 (325)
                      ..+.-+..+..+++++|.++     .+...+.+-.+|+..++++ .+.+..           ... +-+|+.|+..+++.
T Consensus        24 eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd-~ftgr~kde~~~~L~~Ll~a-Llkcp~l~~v~LSD  101 (388)
T COG5238          24 EELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSD-AFTGRDKDELYSNLVMLLKA-LLKCPRLQKVDLSD  101 (388)
T ss_pred             HHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhh-hhhcccHHHHHHHHHHHHHH-HhcCCcceeeeccc
Confidence            33455788999999999773     3444466667788888876 443322           122 66889999999999


Q ss_pred             cceeeeeeccCccchh----hhccCCCcceEEEEecCcccccccccC-----------ccccCCceEEEEceeeeecccc
Q 048462           84 TELVELHYVDSTSVLA----ELESLENIHDISVTLCNVDAVNRVKSS-----------PKLQSCIKRLAVVLMASFLLPL  148 (325)
Q Consensus        84 ~~~~~~~~~~~~~~~~----~l~~l~~L~~L~l~~~~~~~~~~~~~~-----------~~~~~~L~~L~l~~~~~~~l~~  148 (325)
                      |-+       ...++.    .+.+.+.|.+|.+.+|....+.+-...           ..-.+.|+.+.+...+...-+.
T Consensus       102 NAf-------g~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~  174 (388)
T COG5238         102 NAF-------GSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSK  174 (388)
T ss_pred             ccc-------CcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcH
Confidence            876       333333    355678899999999876543221110           1112346777666433322222


Q ss_pred             ------cccCCCCCeEEEcCCCCceeccccCCCCCccccccccccEEEecCCCCCCccc------cccCCCCccEEEEec
Q 048462          149 ------DLRMDHLETLEIDRCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDLK------WIRYAPNLQFLYVSY  216 (325)
Q Consensus       149 ------l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~------~~~~~~~L~~L~l~~  216 (325)
                            +....+|+.+.+..|..-..++..  ........+.+|+.|+++++ .++-..      .+...+.|+.|.+.+
T Consensus       175 ~~~a~~l~sh~~lk~vki~qNgIrpegv~~--L~~~gl~y~~~LevLDlqDN-tft~~gS~~La~al~~W~~lrEL~lnD  251 (388)
T COG5238         175 ELSAALLESHENLKEVKIQQNGIRPEGVTM--LAFLGLFYSHSLEVLDLQDN-TFTLEGSRYLADALCEWNLLRELRLND  251 (388)
T ss_pred             HHHHHHHHhhcCceeEEeeecCcCcchhHH--HHHHHHHHhCcceeeecccc-chhhhhHHHHHHHhcccchhhhccccc
Confidence                  445568888888877754211100  00011145678888888877 444321      233456778888888


Q ss_pred             cCCchhhcccCCCCCCCccc--cccccCCcccEEeccCCCCcce-ec------cCcccCCCccEEeeeCCCCCCC
Q 048462          217 CPRLSEIIGTYESPGTSEIE--ESQDFFSNLMVIDLRHLPSLTS-IC------CGVVPFPSLQTISVNGCPSLRK  282 (325)
Q Consensus       217 ~~~l~~~~~~~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~l~~-~~------~~~~~~~~L~~L~l~~c~~l~~  282 (325)
                      |-.-..-.        ..+.  +.-..+|+|..|....+..-.. +.      +...++|-|..|.+.|+ +++.
T Consensus       252 Clls~~G~--------~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngN-r~~E  317 (388)
T COG5238         252 CLLSNEGV--------KSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGN-RIKE  317 (388)
T ss_pred             hhhccccH--------HHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccC-cchh
Confidence            75321111        1111  1223467777776665422111 11      12234677777777665 5543

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=96.99  E-value=0.00017  Score=53.80  Aligned_cols=81  Identities=23%  Similarity=0.265  Sum_probs=69.1

Q ss_pred             CCcEEecCCCCCCCcCchhhhCc-ccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEe
Q 048462            3 ALAVLDLSYNLDLVKLPEAIGKL-INLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSW   81 (325)
Q Consensus         3 ~L~~L~l~~~~~~~~lp~~~~~l-~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l   81 (325)
                      +|...+|++| .+.+.|+.+... +.+++|++.+|++..+|..+..++.|+.|+++.|.+ ...|.- +..+.++-.|+.
T Consensus        54 el~~i~ls~N-~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l-~~~p~v-i~~L~~l~~Lds  130 (177)
T KOG4579|consen   54 ELTKISLSDN-GFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPL-NAEPRV-IAPLIKLDMLDS  130 (177)
T ss_pred             eEEEEecccc-hhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCcc-ccchHH-HHHHHhHHHhcC
Confidence            5778899999 899998877754 589999999999999999999999999999999554 445655 777999999998


Q ss_pred             cccce
Q 048462           82 FSTEL   86 (325)
Q Consensus        82 ~~~~~   86 (325)
                      ..+..
T Consensus       131 ~~na~  135 (177)
T KOG4579|consen  131 PENAR  135 (177)
T ss_pred             CCCcc
Confidence            88876

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=96.86  E-value=0.0023  Score=50.99  Aligned_cols=42  Identities=24%  Similarity=0.256  Sum_probs=19.7

Q ss_pred             cccCCCCCeEEEcCCCCceeccccCCCCCccccccccccEEEecCC
Q 048462          149 DLRMDHLETLEIDRCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTC  194 (325)
Q Consensus       149 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  194 (325)
                      +..+|.|++|.+-+|+..+..-+    -......+|+|+.|++++.
T Consensus       109 La~~p~L~~Ltll~Npv~~k~~Y----R~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  109 LASCPKLEYLTLLGNPVEHKKNY----RLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             hccCCccceeeecCCchhcccCc----eeEEEEecCcceEeehhhh
Confidence            34556666666666654321100    0011134566666666554

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.66  E-value=0.00098  Score=55.15  Aligned_cols=90  Identities=23%  Similarity=0.324  Sum_probs=58.1

Q ss_pred             hhCcccCceecCCCCcccccChhhhccccCceeeccCC--CCCeeechhhhhCCCcccEEEecccceeeeeeccCccchh
Q 048462           22 IGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGM--RYLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLA   99 (325)
Q Consensus        22 ~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~--~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~   99 (325)
                      ......|+.+++.++.++.+ ..+-.|++|++|.++.|  .....++.- ..++++|+++.++.|++.      .-....
T Consensus        39 ~d~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl-~e~~P~l~~l~ls~Nki~------~lstl~  110 (260)
T KOG2739|consen   39 TDEFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVL-AEKAPNLKVLNLSGNKIK------DLSTLR  110 (260)
T ss_pred             cccccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceeh-hhhCCceeEEeecCCccc------cccccc
Confidence            34456677777777655433 12345789999999988  455555544 556799999999999871      112233


Q ss_pred             hhccCCCcceEEEEecCccc
Q 048462          100 ELESLENIHDISVTLCNVDA  119 (325)
Q Consensus       100 ~l~~l~~L~~L~l~~~~~~~  119 (325)
                      -+..+++|..|++..|....
T Consensus       111 pl~~l~nL~~Ldl~n~~~~~  130 (260)
T KOG2739|consen  111 PLKELENLKSLDLFNCSVTN  130 (260)
T ss_pred             hhhhhcchhhhhcccCCccc
Confidence            34556677788888876543

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.12  E-value=0.0018  Score=32.14  Aligned_cols=20  Identities=40%  Similarity=0.612  Sum_probs=10.9

Q ss_pred             CCcEEecCCCCCCCcCchhhh
Q 048462            3 ALAVLDLSYNLDLVKLPEAIG   23 (325)
Q Consensus         3 ~L~~L~l~~~~~~~~lp~~~~   23 (325)
                      +|++||+++| .++.+|+.++
T Consensus         1 ~L~~Ldls~n-~l~~ip~~~~   20 (22)
T PF00560_consen    1 NLEYLDLSGN-NLTSIPSSFS   20 (22)
T ss_dssp             TESEEEETSS-EESEEGTTTT
T ss_pred             CccEEECCCC-cCEeCChhhc
Confidence            3556666666 5555555444

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.12  E-value=0.0011  Score=55.36  Aligned_cols=78  Identities=27%  Similarity=0.287  Sum_probs=61.2

Q ss_pred             CCCCcEEecCCCCCCCcCchhhhCcccCceecCCCCcccccC--hhhhccccCceeeccCCCCCeeec----hhhhhCCC
Q 048462            1 MHALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLP--TGITYLKNLKILRLDGMRYLAFVP----CQVISSLS   74 (325)
Q Consensus         1 ~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp--~~l~~l~~L~~L~l~~~~~~~~~~----~~~~~~l~   74 (325)
                      |+.|++|.|+-| .|+.+ ..+..|++|+.|+|+.|.|..+-  .-+.++++|+.|-+..|-..+.-+    ..++.-++
T Consensus        40 Mp~lEVLsLSvN-kIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LP  117 (388)
T KOG2123|consen   40 MPLLEVLSLSVN-KISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLP  117 (388)
T ss_pred             cccceeEEeecc-ccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcc
Confidence            688999999999 88888 45899999999999999886442  237889999999988775544333    33466788


Q ss_pred             cccEEE
Q 048462           75 SLQVFS   80 (325)
Q Consensus        75 ~L~~L~   80 (325)
                      +|+.||
T Consensus       118 nLkKLD  123 (388)
T KOG2123|consen  118 NLKKLD  123 (388)
T ss_pred             cchhcc
Confidence            888886

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.94  E-value=0.0028  Score=31.41  Aligned_cols=21  Identities=33%  Similarity=0.659  Sum_probs=12.6

Q ss_pred             cCceecCCCCcccccChhhhc
Q 048462           27 NLCYLNLSNTRIGQLPTGITY   47 (325)
Q Consensus        27 ~L~~L~l~~~~l~~lp~~l~~   47 (325)
                      +|++|++++|.++.+|..+++
T Consensus         1 ~L~~Ldls~n~l~~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEESEEGTTTTT
T ss_pred             CccEEECCCCcCEeCChhhcC
Confidence            356666666666666655443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.86  E-value=0.0014  Score=52.23  Aligned_cols=64  Identities=30%  Similarity=0.426  Sum_probs=35.3

Q ss_pred             ccccccEEEecCCCCCCcc--cccc-CCCCccEEEEeccCCchhhcccCCCCCCCccccccccCCcccEEeccCCCCc
Q 048462          182 CFRNLRHLSVKTCPCMTDL--KWIR-YAPNLQFLYVSYCPRLSEIIGTYESPGTSEIEESQDFFSNLMVIDLRHLPSL  256 (325)
Q Consensus       182 ~~~~L~~L~l~~~~~l~~l--~~~~-~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l  256 (325)
                      .++.++.|.+.+|.++.+.  ..++ -.|+|+.|+|++|+.+++...           ..+..+++|+.|.+.+.+.+
T Consensus       123 ~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL-----------~~L~~lknLr~L~l~~l~~v  189 (221)
T KOG3864|consen  123 DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGL-----------ACLLKLKNLRRLHLYDLPYV  189 (221)
T ss_pred             ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHH-----------HHHHHhhhhHHHHhcCchhh
Confidence            3455555566666555542  2222 356666666666666665543           45556666666666655433

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.75  E-value=0.005  Score=51.05  Aligned_cols=68  Identities=10%  Similarity=0.095  Sum_probs=40.5

Q ss_pred             hccccCceeeccCCCCCeeechhhhhCCCcccEEEecccceeeeeeccCccchhhhccCCCcceEEEEecCccccc
Q 048462           46 TYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVN  121 (325)
Q Consensus        46 ~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  121 (325)
                      -.+..|+.+.+.++..++ +..  +..+++|+.|.++.|..     .....+..-...+++|+++.+++|++..+.
T Consensus        40 d~~~~le~ls~~n~gltt-~~~--~P~Lp~LkkL~lsdn~~-----~~~~~l~vl~e~~P~l~~l~ls~Nki~~ls  107 (260)
T KOG2739|consen   40 DEFVELELLSVINVGLTT-LTN--FPKLPKLKKLELSDNYR-----RVSGGLEVLAEKAPNLKVLNLSGNKIKDLS  107 (260)
T ss_pred             ccccchhhhhhhccceee-ccc--CCCcchhhhhcccCCcc-----cccccceehhhhCCceeEEeecCCcccccc
Confidence            345566666666643322 222  55678888888888832     003333434445588888888888766543

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.20  E-value=0.012  Score=27.02  Aligned_cols=17  Identities=53%  Similarity=0.681  Sum_probs=7.6

Q ss_pred             CCCcEEecCCCCCCCcCc
Q 048462            2 HALAVLDLSYNLDLVKLP   19 (325)
Q Consensus         2 ~~L~~L~l~~~~~~~~lp   19 (325)
                      ++|++|++++| .++.+|
T Consensus         1 ~~L~~L~l~~n-~L~~lP   17 (17)
T PF13504_consen    1 PNLRTLDLSNN-RLTSLP   17 (17)
T ss_dssp             TT-SEEEETSS---SSE-
T ss_pred             CccCEEECCCC-CCCCCc
Confidence            35666666666 455543

...

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=94.18  E-value=0.13  Score=38.26  Aligned_cols=82  Identities=16%  Similarity=0.179  Sum_probs=37.3

Q ss_pred             hhhCcccCceecCCCCcccccChh-hhccccCceeeccCCCCCeeechhhhhCCCcccEEEecccceeeeeeccCccchh
Q 048462           21 AIGKLINLCYLNLSNTRIGQLPTG-ITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLA   99 (325)
Q Consensus        21 ~~~~l~~L~~L~l~~~~l~~lp~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~   99 (325)
                      .+.++.+|+.+.+.. .++.++.. +..+.+|+.+.+.+.  ...++..++..+++|+.+.+.....        .....
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~~~~--------~i~~~   75 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPNNLK--------SIGDN   75 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETSTT---------EE-TT
T ss_pred             HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc--ccccceeeeeccccccccccccccc--------ccccc
Confidence            455666777777664 34444333 455667777777652  4444444466666677777755221        11222


Q ss_pred             hhccCCCcceEEEE
Q 048462          100 ELESLENIHDISVT  113 (325)
Q Consensus       100 ~l~~l~~L~~L~l~  113 (325)
                      .+..+++|+.+.+.
T Consensus        76 ~F~~~~~l~~i~~~   89 (129)
T PF13306_consen   76 AFSNCTNLKNIDIP   89 (129)
T ss_dssp             TTTT-TTECEEEET
T ss_pred             cccccccccccccC
Confidence            34446666666653

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.18  E-value=0.0083  Score=47.93  Aligned_cols=61  Identities=13%  Similarity=0.139  Sum_probs=34.0

Q ss_pred             cccEEEecccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceee
Q 048462           75 SLQVFSWFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMA  142 (325)
Q Consensus        75 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  142 (325)
                      .++.++-+++.+       ...-...+..++.++.|.+.+|...+...+..+.....+|+.|+|++|.
T Consensus       102 ~IeaVDAsds~I-------~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~  162 (221)
T KOG3864|consen  102 KIEAVDASDSSI-------MYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCP  162 (221)
T ss_pred             eEEEEecCCchH-------HHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCC
Confidence            356666666655       4445566667777777777777655444443333333444444444433

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=93.35  E-value=0.31  Score=36.18  Aligned_cols=99  Identities=14%  Similarity=0.224  Sum_probs=54.7

Q ss_pred             CCCCcEEecCCCCCCCcCc-hhhhCcccCceecCCCCcccccChh-hhccccCceeeccCCCCCeeechhhhhCCCcccE
Q 048462            1 MHALAVLDLSYNLDLVKLP-EAIGKLINLCYLNLSNTRIGQLPTG-ITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQV   78 (325)
Q Consensus         1 ~~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~l~~lp~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~   78 (325)
                      |.+|+.+.+..  .+..++ ..+..+.+|+.+.+..+ +..++.. +.++++|+.+.+..  ....++...+..+++|+.
T Consensus        11 ~~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l~~   85 (129)
T PF13306_consen   11 CSNLESITFPN--TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN--NLKSIGDNAFSNCTNLKN   85 (129)
T ss_dssp             -TT--EEEETS--T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTTTT-TTECE
T ss_pred             CCCCCEEEECC--CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc--cccccccccccccccccc
Confidence            35788888874  356664 55888989999999875 6555443 56788899999976  334445443788999999


Q ss_pred             EEecccceeeeeeccCccchhhhccCCCcceEEEE
Q 048462           79 FSWFSTELVELHYVDSTSVLAELESLENIHDISVT  113 (325)
Q Consensus        79 L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~  113 (325)
                      +.+..+ .       .......+..+ +|+.+.+.
T Consensus        86 i~~~~~-~-------~~i~~~~f~~~-~l~~i~~~  111 (129)
T PF13306_consen   86 IDIPSN-I-------TEIGSSSFSNC-NLKEINIP  111 (129)
T ss_dssp             EEETTT---------BEEHTTTTTT--T--EEE-T
T ss_pred             cccCcc-c-------cEEchhhhcCC-CceEEEEC
Confidence            999764 3       12223345555 77776654

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=92.14  E-value=0.1  Score=26.88  Aligned_cols=16  Identities=25%  Similarity=0.850  Sum_probs=13.3

Q ss_pred             CCCccEEeeeCCCCCC
Q 048462          266 FPSLQTISVNGCPSLR  281 (325)
Q Consensus       266 ~~~L~~L~l~~c~~l~  281 (325)
                      +++|+.|++++|++++
T Consensus         1 c~~L~~L~l~~C~~it   16 (26)
T smart00367        1 CPNLRELDLSGCTNIT   16 (26)
T ss_pred             CCCCCEeCCCCCCCcC
Confidence            5788888998888887

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=90.97  E-value=0.25  Score=25.26  Aligned_cols=18  Identities=50%  Similarity=0.602  Sum_probs=10.2

Q ss_pred             CCCcEEecCCCCCCCcCch
Q 048462            2 HALAVLDLSYNLDLVKLPE   20 (325)
Q Consensus         2 ~~L~~L~l~~~~~~~~lp~   20 (325)
                      ++|++|++++| .++.+|.
T Consensus         2 ~~L~~L~L~~N-~l~~lp~   19 (26)
T smart00369        2 PNLRELDLSNN-QLSSLPP   19 (26)
T ss_pred             CCCCEEECCCC-cCCcCCH
Confidence            45556666666 5555554

>smart00370 LRR Leucine-rich repeats, outliers

Probab=90.97  E-value=0.25  Score=25.26  Aligned_cols=18  Identities=50%  Similarity=0.602  Sum_probs=10.2

Q ss_pred             CCCcEEecCCCCCCCcCch
Q 048462            2 HALAVLDLSYNLDLVKLPE   20 (325)
Q Consensus         2 ~~L~~L~l~~~~~~~~lp~   20 (325)
                      ++|++|++++| .++.+|.
T Consensus         2 ~~L~~L~L~~N-~l~~lp~   19 (26)
T smart00370        2 PNLRELDLSNN-QLSSLPP   19 (26)
T ss_pred             CCCCEEECCCC-cCCcCCH
Confidence            45556666666 5555554

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=90.61  E-value=0.21  Score=25.56  Aligned_cols=21  Identities=48%  Similarity=0.689  Sum_probs=15.0

Q ss_pred             cccCceecCCCCcccccChhh
Q 048462           25 LINLCYLNLSNTRIGQLPTGI   45 (325)
Q Consensus        25 l~~L~~L~l~~~~l~~lp~~l   45 (325)
                      +.+|++|++++|.++.+|...
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHH
Confidence            356778888888777777653

>smart00370 LRR Leucine-rich repeats, outliers

Probab=90.61  E-value=0.21  Score=25.56  Aligned_cols=21  Identities=48%  Similarity=0.689  Sum_probs=15.0

Q ss_pred             cccCceecCCCCcccccChhh
Q 048462           25 LINLCYLNLSNTRIGQLPTGI   45 (325)
Q Consensus        25 l~~L~~L~l~~~~l~~lp~~l   45 (325)
                      +.+|++|++++|.++.+|...
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHH
Confidence            356778888888777777653

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=83.74  E-value=0.052  Score=44.56  Aligned_cols=85  Identities=14%  Similarity=0.125  Sum_probs=44.1

Q ss_pred             hhCcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEecccceeeeeeccCccchhhh
Q 048462           22 IGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLAEL  101 (325)
Q Consensus        22 ~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l  101 (325)
                      +..-+.-..||++.+.+..+-..++.+..|..|+++. +-...+|.. ++....+.+++..+|..        +..|.+.
T Consensus        38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sk-nq~~~~~~d-~~q~~e~~~~~~~~n~~--------~~~p~s~  107 (326)
T KOG0473|consen   38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSK-NQIKFLPKD-AKQQRETVNAASHKNNH--------SQQPKSQ  107 (326)
T ss_pred             hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccH-hhHhhChhh-HHHHHHHHHHHhhccch--------hhCCccc
Confidence            3344455555555555544444455555555566655 223344444 55555555555555543        3445555


Q ss_pred             ccCCCcceEEEEecC
Q 048462          102 ESLENIHDISVTLCN  116 (325)
Q Consensus       102 ~~l~~L~~L~l~~~~  116 (325)
                      +..++++.+...++.
T Consensus       108 ~k~~~~k~~e~k~~~  122 (326)
T KOG0473|consen  108 KKEPHPKKNEQKKTE  122 (326)
T ss_pred             cccCCcchhhhccCc
Confidence            555555555555443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	325
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-13
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-05
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-09
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-07
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-07
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-07
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	8e-07
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	6e-06
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-06
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	9e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	8e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	8e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-04
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-04
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-05
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-05
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	8e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	5e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	5e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	7e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-04
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	9e-04

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 68.4 bits (168), Expect = 3e-13
 Identities = 51/288 (17%), Positives = 97/288 (33%), Gaps = 53/288 (18%)

Query: 1   MHALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMR 60
                 L+L     L + P+   +L +L ++ +    + +LP  +     L+ L L    
Sbjct: 80  QPGRVALELRSV-PLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNP 138

Query: 61  YLAFVPCQVISSLSSLQVFS-WFSTELVEL-HYVDSTSVLAELESLENIHDISVTLCNVD 118
            L  +P   I+SL+ L+  S     EL EL   + ST    E + L N+  + +      
Sbjct: 139 -LRALP-ASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRL------ 190

Query: 119 AVNRVKSSPKLQSCIKRLAVVLMASFLLPLDL-RMDHLETLEIDRCSLESKNDYFGDQGR 177
                     ++S              LP  +  + +L++L+I    L +          
Sbjct: 191 ------EWTGIRS--------------LPASIANLQNLKSLKIRNSPLSALGPAIHH--- 227

Query: 178 TRTYCFRNLRHLSVKTCPCMTDL-KWIRYAPNLQFLYVSYCPRLSEIIGTYESPGTSEIE 236
                   L  L ++ C  + +          L+ L +  C  L  +      P   +I 
Sbjct: 228 -----LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTL------P--LDIH 274

Query: 237 ESQDFFSNLMVIDLRHLPSLTSICCGVVPFPSLQTISVNGCPSLRKLP 284
                 + L  +DLR   +L+ +   +   P+   I V      +   
Sbjct: 275 R----LTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQ 318

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 43.4 bits (103), Expect = 5e-05
 Identities = 44/323 (13%), Positives = 96/323 (29%), Gaps = 66/323 (20%)

Query: 3   ALAVLDLSYNLDLVKLPEAIGKLINLCYLN--------------------LSNTRIGQLP 42
               L    +  L    + + +       +                     +   +    
Sbjct: 13  GRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATA 72

Query: 43  TGITYLK--NLKILRLDGMRYLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLAE 100
             +          L L  +  L   P      LS LQ  +  +  L+EL   D+    A 
Sbjct: 73  DLLEDATQPGRVALELRSVP-LPQFP-DQAFRLSHLQHMTIDAAGLMELP--DTMQQFAG 128

Query: 101 LESLE----NIHDISVTLCNVDAVNRVKSSPKLQ-------SCIKRLAVVLMASFLLPLD 149
           LE+L      +  +  ++ ++          +L+         +  L   L ++      
Sbjct: 129 LETLTLARNPLRALPASIASL---------NRLRELSIRACPELTELPEPLASTDASGEH 179

Query: 150 LRMDHLETLEIDRCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDLKWIRYAPNL 209
             + +L++L ++   + S      +         +NL+ L ++  P       I + P L
Sbjct: 180 QGLVNLQSLRLEWTGIRSLPASIAN--------LQNLKSLKIRNSPLSALGPAIHHLPKL 231

Query: 210 QFLYVSYCPRLSEIIGTYESPGTSEIEESQDFFSNLMVIDLRHLPSLTSICCGVVPFPSL 269
           + L +  C  L         P            + L  + L+   +L ++   +     L
Sbjct: 232 EELDLRGCTALRNY------P--PIFGG----RAPLKRLILKDCSNLLTLPLDIHRLTQL 279

Query: 270 QTISVNGCPSLRKLPLNSGSAKN 292
           + + + GC +L +LP        
Sbjct: 280 EKLDLRGCVNLSRLPSLIAQLPA 302

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 52.3 bits (126), Expect = 8e-08
 Identities = 18/80 (22%), Positives = 30/80 (37%), Gaps = 2/80 (2%)

Query: 1   MHALAVLDLSYN--LDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDG 58
           + +L  LDLS N         ++     +L YL+LS   +  + +    L+ L+ L    
Sbjct: 346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQH 405

Query: 59  MRYLAFVPCQVISSLSSLQV 78
                     V  SL +L  
Sbjct: 406 SNLKQMSEFSVFLSLRNLIY 425

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 44.2 bits (105), Expect = 4e-05
 Identities = 18/80 (22%), Positives = 34/80 (42%), Gaps = 2/80 (2%)

Query: 1   MHALAVLDLSYN-LDLVKLPEAIGKLINLCYLNLSNTRIGQLPTG-ITYLKNLKILRLDG 58
           +  L  LD  ++ L  +        L NL YL++S+T       G    L +L++L++ G
Sbjct: 395 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 454

Query: 59  MRYLAFVPCQVISSLSSLQV 78
             +       + + L +L  
Sbjct: 455 NSFQENFLPDIFTELRNLTF 474

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 43.5 bits (103), Expect = 7e-05
 Identities = 22/79 (27%), Positives = 30/79 (37%), Gaps = 2/79 (2%)

Query: 1   MHALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTG-ITYLKNLKILRLDGM 59
              L VLDLS          A   L +L  L L+   I  L  G  + L +L+ L     
Sbjct: 51  FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET 110

Query: 60  RYLAFVPCQVISSLSSLQV 78
             LA +    I  L +L+ 
Sbjct: 111 N-LASLENFPIGHLKTLKE 128

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 22/76 (28%), Positives = 29/76 (38%), Gaps = 2/76 (2%)

Query: 4   LAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTG-ITYLKNLKILRLDGMRYL 62
              LDLS+N        +      L  L+LS   I  +  G    L +L  L L G   +
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-I 88

Query: 63  AFVPCQVISSLSSLQV 78
             +     S LSSLQ 
Sbjct: 89  QSLALGAFSGLSSLQK 104

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 40.8 bits (96), Expect = 4e-04
 Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 3/80 (3%)

Query: 1   MHALAVLDLSYN-LDLVKLPEAIGKLINLCYLNLSNTRIGQLPTG-ITYLKNLKILRLDG 58
           + +L VL ++ N      LP+   +L NL +L+LS  ++ QL       L +L++L +  
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 503

Query: 59  MRYLAFVPCQVISSLSSLQV 78
                 +       L+SLQV
Sbjct: 504 NN-FFSLDTFPYKCLNSLQV 522

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 50.8 bits (122), Expect = 2e-07
 Identities = 13/58 (22%), Positives = 25/58 (43%), Gaps = 1/58 (1%)

Query: 1   MHALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDG 58
              L  LDLS N  L  +         + +++L N ++  +   + + +NL+   L G
Sbjct: 190 FAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRG 246

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 46.9 bits (112), Expect = 3e-06
 Identities = 16/104 (15%), Positives = 39/104 (37%), Gaps = 8/104 (7%)

Query: 1   MHALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMR 60
           +  L  LDL+ N     + + +    ++  L+ +N  I ++       +  K + L   +
Sbjct: 79  LSTLRTLDLNNN----YV-QELLVGPSIETLHAANNNISRVSCSR--GQGKKNIYLANNK 131

Query: 61  YLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLAELESL 104
            +  +        S +Q       E+  +++ +  +    LE L
Sbjct: 132 -ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL 174

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 43.4 bits (103), Expect = 4e-05
 Identities = 21/81 (25%), Positives = 30/81 (37%), Gaps = 4/81 (4%)

Query: 1   MHALAVLDLSYN-LDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGM 59
              +  LDL  N +D V   E       L +LNL    I  +   +     LK L L   
Sbjct: 143 RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV-VFAKLKTLDLSSN 201

Query: 60  RYLAFVPCQVISSLSSLQVFS 80
           + LAF+      S + +   S
Sbjct: 202 K-LAFMG-PEFQSAAGVTWIS 220

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 40.7 bits (96), Expect = 4e-04
 Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 3/59 (5%)

Query: 1  MHALAVLDLSYNLDLVKLP-EAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDG 58
             +  LDLS N  L ++    +     L  LNLS+  + +    +  L  L+ L L+ 
Sbjct: 33 AWNVKELDLSGNP-LSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNN 89

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 50.6 bits (121), Expect = 3e-07
 Identities = 13/58 (22%), Positives = 25/58 (43%), Gaps = 1/58 (1%)

Query: 1   MHALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDG 58
              L  LDLS N  L  +         + +++L N ++  +   + + +NL+   L G
Sbjct: 190 FAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRG 246

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 47.1 bits (112), Expect = 4e-06
 Identities = 17/104 (16%), Positives = 39/104 (37%), Gaps = 8/104 (7%)

Query: 1   MHALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMR 60
           +  L  LDL+ N     + E +    ++  L+ +N  I ++       +  K + L   +
Sbjct: 79  LSTLRTLDLNNN----YVQE-LLVGPSIETLHAANNNISRVSCSR--GQGKKNIYLANNK 131

Query: 61  YLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLAELESL 104
            +  +        S +Q       E+  +++ +  +    LE L
Sbjct: 132 -ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL 174

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 42.9 bits (101), Expect = 1e-04
 Identities = 20/79 (25%), Positives = 29/79 (36%), Gaps = 4/79 (5%)

Query: 1   MHALAVLDLSYN-LDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGM 59
              +  LDL  N +D V   E       L +LNL    I  +   +     LK L L   
Sbjct: 143 RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV-VFAKLKTLDLSSN 201

Query: 60  RYLAFVPCQVISSLSSLQV 78
           + LAF+      S + +  
Sbjct: 202 K-LAFMG-PEFQSAAGVTW 218

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 40.2 bits (94), Expect = 7e-04
 Identities = 14/58 (24%), Positives = 22/58 (37%), Gaps = 1/58 (1%)

Query: 1  MHALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDG 58
             +  LDLS N         +     L  LNLS+  + +    +  L  L+ L L+ 
Sbjct: 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNN 89

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 49.7 bits (119), Expect = 6e-07
 Identities = 26/103 (25%), Positives = 44/103 (42%), Gaps = 3/103 (2%)

Query: 1   MHALAVLDLSYNLDLVKLPE-AIGKLINLCYLNLSNTRIGQLPTGI-TYLKNLKILRLDG 58
           +  L  L+L  N  L  +P  A   L  L  L L N  I  +P+     + +L+ L L  
Sbjct: 111 LANLNTLELFDN-RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGE 169

Query: 59  MRYLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLAEL 101
           ++ L+++       LS+L+  +     L E+  +     L EL
Sbjct: 170 LKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDEL 212

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 49.6 bits (118), Expect = 6e-07
 Identities = 15/62 (24%), Positives = 23/62 (37%), Gaps = 5/62 (8%)

Query: 1   MHALAVLDLSYNLDLVKLPEAIGKLINL----CYLNLSNTRIGQLPTGITYLKNLKILRL 56
             +L  LD+S NL L  LP    +  +      +      RI  +P  I  L     + L
Sbjct: 179 PESLEALDVSTNL-LESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIIL 237

Query: 57  DG 58
           + 
Sbjct: 238 ED 239

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 45.0 bits (106), Expect = 2e-05
 Identities = 17/75 (22%), Positives = 33/75 (44%), Gaps = 8/75 (10%)

Query: 4   LAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLA 63
            + L L+   +L  LP+ +     +  L ++   +  LP       +L+ L     R L+
Sbjct: 61  FSELQLNRL-NLSSLPDNLPP--QITVLEITQNALISLPELPA---SLEYLDACDNR-LS 113

Query: 64  FVPCQVISSLSSLQV 78
            +P ++ +SL  L V
Sbjct: 114 TLP-ELPASLKHLDV 127

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 49.5 bits (118), Expect = 8e-07
 Identities = 59/316 (18%), Positives = 104/316 (32%), Gaps = 40/316 (12%)

Query: 4   LAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLA 63
            AVL++  +  L  LP+ +    ++  L + +  +  LP        L+ L + G + L 
Sbjct: 42  NAVLNVGES-GLTTLPDCLPA--HITTLVIPDNNLTSLPALPP---ELRTLEVSGNQ-LT 94

Query: 64  FVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLAELESLEN-IHDISVTLCNVD---- 118
            +P  +   L  L +FS   T L  L      S L +L    N +  + V    +     
Sbjct: 95  SLP-VLPPGLLELSIFSNPLTHLPALP-----SGLCKLWIFGNQLTSLPVLPPGLQELSV 148

Query: 119 AVNRVKSSPKLQSCIKRLAVVLMASFLLPLDLRMDHLETLEIDRCSLESKNDYFGDQGRT 178
           + N++ S P L S + +L         LP+      L+ L +    L S           
Sbjct: 149 SDNQLASLPALPSELCKLWAYNNQLTSLPMLP--SGLQELSVSDNQLASLPTLPS----- 201

Query: 179 RTYCFRNLRHLSVKTCPCMTDLKWIRYAPNLQFLYVSYCP--RLSEIIGTYESPGTSE-- 234
                  L  L        +          L+ L VS      L  +    +    S   
Sbjct: 202 ------ELYKLWAYNNRLTSLPALP---SGLKELIVSGNRLTSLPVLPSELKELMVSGNR 252

Query: 235 IEESQDFFSNLMVIDLRHLPSLTSICCGVVPFPSLQTISVNGCPSLRKLPLNSGSAKNSL 294
           +       S L+ + +     LT +   ++   S  T+++ G P L +  L +     S 
Sbjct: 253 LTSLPMLPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNP-LSERTLQALREITSA 310

Query: 295 NAIRGSREWWDRLEWE 310
               G    +D     
Sbjct: 311 PGYSGPIIRFDMAGAS 326

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 48.1 bits (115), Expect = 1e-06
 Identities = 21/79 (26%), Positives = 30/79 (37%), Gaps = 3/79 (3%)

Query: 1   MHALAVLDLSYNLDLVKLP-EAIGKLINLCYLNLSNTRIGQLPTGI-TYLKNLKILRLDG 58
           +  L  LDLS N  L  +       L  L  L+L    + +L  G+   L  L+ L L  
Sbjct: 79  LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD 138

Query: 59  MRYLAFVPCQVISSLSSLQ 77
              L  +P      L +L 
Sbjct: 139 NA-LQALPDDTFRDLGNLT 156

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 41.9 bits (99), Expect = 1e-04
 Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 4/79 (5%)

Query: 1   MHALAVLDLSYNLDLVKLPE-AIGKLINLCYLNLSNTRIGQLPTGI-TYLKNLKILRLDG 58
           +  L  L L  N  +  +PE A   L +L  L L   R+  +       L  L  L L  
Sbjct: 152 LGNLTHLFLHGNR-ISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA 210

Query: 59  MRYLAFVPCQVISSLSSLQ 77
              L+ +P + ++ L +LQ
Sbjct: 211 NN-LSALPTEALAPLRALQ 228

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 40.0 bits (94), Expect = 5e-04
 Identities = 16/76 (21%), Positives = 25/76 (32%), Gaps = 3/76 (3%)

Query: 4   LAVLDLSYNLDLVKLPE-AIGKLINLCYLNLSNTRIGQLPTGI-TYLKNLKILRLDGMRY 61
              + L  N  +  +P  +     NL  L L +  + ++     T L  L+ L L     
Sbjct: 34  SQRIFLHGNR-ISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 62  LAFVPCQVISSLSSLQ 77
           L  V       L  L 
Sbjct: 93  LRSVDPATFHGLGRLH 108

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 17/84 (20%), Positives = 40/84 (47%), Gaps = 7/84 (8%)

Query: 1   MHALAVLDLSYNLDLVKLPE-AIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDG- 58
           ++ LA L LS+N  +  +   ++    +L  L+L+N ++ ++P G+   K ++++ L   
Sbjct: 215 LNNLAKLGLSFNS-ISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNN 273

Query: 59  -MRYL---AFVPCQVISSLSSLQV 78
            +  +    F P    +  +S   
Sbjct: 274 NISAIGSNDFCPPGYNTKKASYSG 297

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 43.5 bits (103), Expect = 5e-05
 Identities = 19/80 (23%), Positives = 38/80 (47%), Gaps = 5/80 (6%)

Query: 1   MHALAVLDLSYN-LDLVKLPE-AIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDG 58
           ++ + V++L  N L    +   A   +  L Y+ +++T I  +P G+    +L  L LDG
Sbjct: 144 LNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL--PPSLTELHLDG 201

Query: 59  MRYLAFVPCQVISSLSSLQV 78
            + +  V    +  L++L  
Sbjct: 202 NK-ITKVDAASLKGLNNLAK 220

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 16/75 (21%), Positives = 29/75 (38%), Gaps = 1/75 (1%)

Query: 4   LAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLA 63
           +  ++L  +               L  L+L+ T + +LP+G+  L  LK L L   +   
Sbjct: 256 VESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANK-FE 314

Query: 64  FVPCQVISSLSSLQV 78
            +     S+  SL  
Sbjct: 315 NLCQISASNFPSLTH 329

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 43.9 bits (104), Expect = 5e-05
 Identities = 12/79 (15%), Positives = 26/79 (32%), Gaps = 2/79 (2%)

Query: 1   MHALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGI-TYLKNLKILRLDGM 59
           +  L  LDL+         +       L  L L+   +  +     +  K LK L     
Sbjct: 56  LINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQT 115

Query: 60  RYLAFVPCQVISSLSSLQV 78
             ++ +    + +  +L+ 
Sbjct: 116 G-ISSIDFIPLHNQKTLES 133

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 43.1 bits (102), Expect = 8e-05
 Identities = 20/112 (17%), Positives = 39/112 (34%), Gaps = 8/112 (7%)

Query: 1   MHALAVLDLSYN-LDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGI-TYLKNLKILRLDG 58
              L +LDL++  L +         L  L  LNLS++ +      +   L  L+ L L G
Sbjct: 399 CPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQG 458

Query: 59  --MRYLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLAELESLENIH 108
                        + +L  L++      +L  +           L+ + ++ 
Sbjct: 459 NHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSID----QHAFTSLKMMNHVD 506

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 43.1 bits (102), Expect = 9e-05
 Identities = 22/112 (19%), Positives = 40/112 (35%), Gaps = 8/112 (7%)

Query: 1   MHALAVLDLSYNLDLVKL-PEAIGKLINLCYLNLSNTRIGQLPTG---ITYLKNLKILRL 56
             +L  L +  N   ++L    +  L NL  L+LS+  I         +  L +L+ L L
Sbjct: 324 FPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNL 383

Query: 57  DGMRYLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLAELESLENIH 108
                   +  +       L++     T    L   D+ S    L  L+ ++
Sbjct: 384 SYNE-PLSLKTEAFKECPQLELLDLAFT---RLKVKDAQSPFQNLHLLKVLN 431

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 48.3 bits (115), Expect = 2e-06
 Identities = 18/83 (21%), Positives = 27/83 (32%), Gaps = 10/83 (12%)

Query: 4   LAVLDLSYNLDLVKLPEAI--GKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRY 61
           L  +DL +N  L  L +      L  L  +++S       PT       LK   +   R 
Sbjct: 730 LTTIDLRFNK-LTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRD 788

Query: 62  LAF------VPCQVISSLSSLQV 78
                     P   I++  SL  
Sbjct: 789 AEGNRILRQWP-TGITTCPSLIQ 810

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 48.3 bits (115), Expect = 2e-06
 Identities = 13/90 (14%), Positives = 30/90 (33%), Gaps = 10/90 (11%)

Query: 1   MHALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRI----------GQLPTGITYLKN 50
           +  L  ++L    ++ +LP+ +  L  L  LN++  R            +L         
Sbjct: 490 LKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPK 549

Query: 51  LKILRLDGMRYLAFVPCQVISSLSSLQVFS 80
           ++I  +       F     +  +  L +  
Sbjct: 550 IQIFYMGYNNLEEFPASASLQKMVKLGLLD 579

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 46.4 bits (110), Expect = 9e-06
 Identities = 10/64 (15%), Positives = 20/64 (31%), Gaps = 8/64 (12%)

Query: 1   MHALAVLDLSYNLDLV------KLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKIL 54
              L    + +  D        + P  I    +L  L + +  I ++   +     L IL
Sbjct: 775 SSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKL--TPQLYIL 832

Query: 55  RLDG 58
            +  
Sbjct: 833 DIAD 836

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 46.0 bits (109), Expect = 1e-05
 Identities = 19/83 (22%), Positives = 31/83 (37%), Gaps = 9/83 (10%)

Query: 1   MHALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRI-------GQLPTGITYLKNLKI 53
           +  L+ +D+SYN      P        L    + + R         Q PTGIT   +L  
Sbjct: 752 LPYLSNMDVSYNC-FSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQ 810

Query: 54  LRLDGMRYLAFVPCQVISSLSSL 76
           L++     +  V  ++   L  L
Sbjct: 811 LQIGSND-IRKVDEKLTPQLYIL 832

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 44.9 bits (106), Expect = 2e-05
 Identities = 14/121 (11%), Positives = 37/121 (30%), Gaps = 10/121 (8%)

Query: 1   MHALAVLDLSYNLDLVKLPEA--IGKLINLCYLNLSNTRIGQLPTGIT------YLKNLK 52
              +  L  S+N  L  +P       +  +  ++ S  +IG     I+         N  
Sbjct: 618 TDQVEGLGFSHN-KLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINAS 676

Query: 53  ILRLDGMRYLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLAELESLENIHDISV 112
            + L     +   P ++ ++ S +      +  +  +            ++   +  I +
Sbjct: 677 TVTLSYNE-IQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDL 735

Query: 113 T 113
            
Sbjct: 736 R 736

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 43.3 bits (102), Expect = 8e-05
 Identities = 44/315 (13%), Positives = 91/315 (28%), Gaps = 50/315 (15%)

Query: 4   LAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLK-NLKILRLDGMRYL 62
           +  L L+      ++P+AIG+L  L  L+                +    +      R  
Sbjct: 325 VTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIR 384

Query: 63  AFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAV-N 121
                  +     L +       +             E++ ++    IS+    +  + N
Sbjct: 385 MHYKKMFLDYDQRLNLSDLLQDAINRNP---------EMKPIKKDSRISLKDTQIGNLTN 435

Query: 122 RVKSSPKLQSCIKRLAVVLMASFLLPLDLRMDHLETLEIDRCSLESKNDYFGDQGRTRTY 181
           R+    K    I+RL      + L  +           I     ++ +DY          
Sbjct: 436 RITFISK---AIQRL------TKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELS 486

Query: 182 --CFRNLRHLSVKTCPCMTDL-KWIRYAPNLQFLYVSYCPRLSEIIGTYESPGTSEIEES 238
               ++L  + +  CP MT L  ++   P LQ L ++   R             + + + 
Sbjct: 487 WSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACN-RGISAAQLKADW--TRLADD 543

Query: 239 QDFFSNLMVIDLRH-----LPSLTSICCGVVPFPSLQTISVN-----------GCPSLRK 282
           +D    + +  + +      P+  S+         L  +                  L  
Sbjct: 544 EDTGPKIQIFYMGYNNLEEFPASASLQ----KMVKLGLLDCVHNKVRHLEAFGTNVKLTD 599

Query: 283 LPLNSGSAKNSLNAI 297
           L L+     N +  I
Sbjct: 600 LKLDY----NQIEEI 610

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 42.9 bits (101), Expect = 1e-04
 Identities = 15/84 (17%), Positives = 27/84 (32%), Gaps = 10/84 (11%)

Query: 4   LAVLDLSYNLDLVKLP-EAIGKLINLCYLNLSNTRIGQLP--------TGITYLKNLKIL 54
            + + LSYN  + K P E       +  + LSN  +  +P                L  +
Sbjct: 675 ASTVTLSYNE-IQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTI 733

Query: 55  RLDGMRYLAFVPCQVISSLSSLQV 78
            L   +  +       ++L  L  
Sbjct: 734 DLRFNKLTSLSDDFRATTLPYLSN 757

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 41.4 bits (97), Expect = 3e-04
 Identities = 14/86 (16%), Positives = 26/86 (30%), Gaps = 11/86 (12%)

Query: 4   LAVLDLSYNL-------DLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITY--LKNLKIL 54
           ++ + LS NL        L            L  ++L   ++  L        L  L  +
Sbjct: 699 ISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNM 758

Query: 55  RLDGMRYLAFVPCQVISSLSSLQVFS 80
            +      +  P     + S L+ F 
Sbjct: 759 DVSYNC-FSSFP-TQPLNSSQLKAFG 782

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 40.6 bits (95), Expect = 6e-04
 Identities = 10/61 (16%), Positives = 21/61 (34%), Gaps = 4/61 (6%)

Query: 1   MHALAVLDLSYNLDLVKLPEAIGK-LINLCYLNLSNTRIGQLP--TGITYLKNLKILRLD 57
              L  L L YN  + ++PE        +  L  S+ ++  +P       +  +  +   
Sbjct: 594 NVKLTDLKLDYNQ-IEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFS 652

Query: 58  G 58
            
Sbjct: 653 Y 653

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 47.8 bits (114), Expect = 2e-06
 Identities = 21/111 (18%), Positives = 41/111 (36%), Gaps = 6/111 (5%)

Query: 4   LAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGI-TYLKNLKILRLDG--MR 60
           +  L +        L      L  +  + + N+++  +P     +LK+L+ L L    M 
Sbjct: 288 IRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMV 347

Query: 61  YLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLAELESLENIHDIS 111
                      +  SLQ        L  +    +  +L  L++L ++ DIS
Sbjct: 348 EEYLKNSACKGAWPSLQTLVLSQNHLRSMQ--KTGEILLTLKNLTSL-DIS 395

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 46.3 bits (110), Expect = 7e-06
 Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 3/80 (3%)

Query: 1   MHALAVLDLSYNLDLVKLP-EAIGKLINLCYLNLSNTRIGQLPTG-ITYLKNLKILRLDG 58
              L VL L  +  +  +  +A   L +L +L+LS+  +  L +     L +LK L L G
Sbjct: 49  CANLQVLILKSS-RINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMG 107

Query: 59  MRYLAFVPCQVISSLSSLQV 78
             Y       +  +L++LQ 
Sbjct: 108 NPYQTLGVTSLFPNLTNLQT 127

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 45.9 bits (109), Expect = 1e-05
 Identities = 24/103 (23%), Positives = 40/103 (38%), Gaps = 4/103 (3%)

Query: 4   LAVLDLSYNLDLVKLPE-AIGKLINLCYLNLSNTRIGQLPTGI-TYLKNLKILRLDGMRY 61
           +  LDLS+N  +  +    +    NL  L L ++RI  +       L +L+ L L     
Sbjct: 28  MKSLDLSFNK-ITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH- 85

Query: 62  LAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLAELESL 104
           L+ +       LSSL+  +        L        L  L++L
Sbjct: 86  LSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTL 128

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 24/99 (24%), Positives = 38/99 (38%), Gaps = 10/99 (10%)

Query: 1   MHALAVLDLSYNL--DLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDG 58
             +L  L LS N    + K  E +  L NL  L++S      +P    + + ++ L L  
Sbjct: 360 WPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSS 419

Query: 59  MRYLAFVPCQVISSLSSL-------QVFSWFSTELVELH 90
              +  V   +  +L  L         FS F   L EL+
Sbjct: 420 TG-IRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELY 457

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 47.0 bits (112), Expect = 4e-06
 Identities = 18/78 (23%), Positives = 30/78 (38%), Gaps = 2/78 (2%)

Query: 1   MHALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMR 60
           M  L  L +S N  LV L      +  L  L+LS+  +  +         L+ L LD   
Sbjct: 271 MQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNS 329

Query: 61  YLAFVPCQVISSLSSLQV 78
            +  +      +L +L +
Sbjct: 330 -IVTLKLSTHHTLKNLTL 346

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 43.9 bits (104), Expect = 4e-05
 Identities = 51/306 (16%), Positives = 96/306 (31%), Gaps = 55/306 (17%)

Query: 1   MHALAVLDLSYNLDLVKLP-EAIGKLINLCYLNLSNTRIGQLPTGI-TYLKNLKILRLDG 58
              + +L+L+    + ++   A      +  L +    I  LP  +   +  L +L L+ 
Sbjct: 68  FRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLER 126

Query: 59  MRYLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVD 118
              L+ +P  +  +   L   S  +  L  +             SL+N+      L +  
Sbjct: 127 ND-LSSLPRGIFHNTPKLTTLSMSNNNLERIE----DDTFQATTSLQNLQ-----LSS-- 174

Query: 119 AVNRVKSSPKLQSCIKRLAVVLMASFLLPLDLRMDHLETLEIDRCSLESKNDYFGDQGRT 178
             NR+       S I  L    ++  LL        +E L+    S+             
Sbjct: 175 --NRLTHVDL--SLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPV------ 224

Query: 179 RTYCFRNLRHLSVKTCPCMTDLKWIRYAPNLQFLYVSYCPRLSEIIGTYESPGT------ 232
                  L  L ++    +TD  W+   P L  + +SY   L +I               
Sbjct: 225 ----NVELTILKLQHNN-LTDTAWLLNYPGLVEVDLSYN-ELEKI-----MYHPFVKMQR 273

Query: 233 -----------SEIEESQDFFSNLMVIDLRHLPSLTSICCGVVPFPSLQTISVNGCPSLR 281
                        +         L V+DL H   L  +      F  L+ + ++   S+ 
Sbjct: 274 LERLYISNNRLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHN-SIV 331

Query: 282 KLPLNS 287
            L L++
Sbjct: 332 TLKLST 337

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 40.0 bits (94), Expect = 6e-04
 Identities = 14/80 (17%), Positives = 35/80 (43%), Gaps = 4/80 (5%)

Query: 1   MHALAVLDLSYNLDLVKLP-EAIGKLINLCYLNLSNTRIGQLPTGI-TYLKNLKILRLDG 58
           ++   ++    +  + KLP   +     +  LNL++ +I ++ T    Y   ++ L +  
Sbjct: 44  LNNQKIVTFKNS-TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGF 102

Query: 59  MRYLAFVPCQVISSLSSLQV 78
              + ++P  V  ++  L V
Sbjct: 103 NA-IRYLPPHVFQNVPLLTV 121

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 47.0 bits (112), Expect = 4e-06
 Identities = 20/86 (23%), Positives = 30/86 (34%), Gaps = 10/86 (11%)

Query: 1   MHALAVLDLSYNLDLVKLPEAI--GKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDG 58
            + L  +DL +N  L KL +      L  L  ++LS     + PT       LK   +  
Sbjct: 487 TYLLTSIDLRFNK-LTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRN 545

Query: 59  MRYLAF------VPCQVISSLSSLQV 78
            R           P + I+   SL  
Sbjct: 546 QRDAQGNRTLREWP-EGITLCPSLTQ 570

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 47.0 bits (112), Expect = 6e-06
 Identities = 21/169 (12%), Positives = 60/169 (35%), Gaps = 19/169 (11%)

Query: 4   LAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLA 63
           L    ++ +     + ++    +    +   +  I  +   +  L  L+   +    ++A
Sbjct: 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVA 220

Query: 64  FVPCQVISSLSSLQVFSWFS---------TELVELHYVD---STSVLAELESLENIHDIS 111
              C+      + +    +           +L ++   +    T +   L++L  +  I+
Sbjct: 221 ENICE-AWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLIN 279

Query: 112 VTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPLDLRMDHLETLEI 160
           V      A NR  S  +L+   + LA   +   +  + +  ++L+T  +
Sbjct: 280 V------ACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPV 322

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 11/64 (17%), Positives = 21/64 (32%), Gaps = 8/64 (12%)

Query: 1   MHALAVLDLSYNLDLV------KLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKIL 54
              L    +    D        + PE I    +L  L + +  I ++   I    N+ +L
Sbjct: 535 SSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKI--TPNISVL 592

Query: 55  RLDG 58
            +  
Sbjct: 593 DIKD 596

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 8/63 (12%)

Query: 4   LAVLDLSYN-------LDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGI-TYLKNLKILR 55
           ++ +D SYN        +   L     K IN+  +NLSN +I + P  + +    L  + 
Sbjct: 404 MSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSIN 463

Query: 56  LDG 58
           L G
Sbjct: 464 LMG 466

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 15/86 (17%), Positives = 28/86 (32%), Gaps = 11/86 (12%)

Query: 4   LAVLDLSYN-------LDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITY--LKNLKIL 54
           L+ ++L  N         L    E       L  ++L   ++ +L        L  L  +
Sbjct: 459 LSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGI 518

Query: 55  RLDGMRYLAFVPCQVISSLSSLQVFS 80
            L      +  P     + S+L+ F 
Sbjct: 519 DLSYNS-FSKFP-TQPLNSSTLKGFG 542

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 46.8 bits (111), Expect = 6e-06
 Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 2/77 (2%)

Query: 1   MHALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMR 60
           M  L  L +S N  LV L      +  L  L+LS+  +  +         L+ L LD   
Sbjct: 277 MQRLERLYISNNR-LVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNS 335

Query: 61  YLAFVPCQVISSLSSLQ 77
            +  +      +L +L 
Sbjct: 336 -IVTLKLSTHHTLKNLT 351

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 44.1 bits (104), Expect = 4e-05
 Identities = 51/306 (16%), Positives = 96/306 (31%), Gaps = 55/306 (17%)

Query: 1   MHALAVLDLSYNLDLVKLP-EAIGKLINLCYLNLSNTRIGQLPTGI-TYLKNLKILRLDG 58
              + +L+L+    + ++   A      +  L +    I  LP  +   +  L +L L+ 
Sbjct: 74  FRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLER 132

Query: 59  MRYLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVD 118
              L+ +P  +  +   L   S  +  L  +             SL+N+      L +  
Sbjct: 133 ND-LSSLPRGIFHNTPKLTTLSMSNNNLERIE----DDTFQATTSLQNLQ-----LSS-- 180

Query: 119 AVNRVKSSPKLQSCIKRLAVVLMASFLLPLDLRMDHLETLEIDRCSLESKNDYFGDQGRT 178
             NR+       S I  L    ++  LL        +E L+    S+             
Sbjct: 181 --NRLTHVD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPV------ 230

Query: 179 RTYCFRNLRHLSVKTCPCMTDLKWIRYAPNLQFLYVSYCPRLSEIIGTYESPGT------ 232
                  L  L ++    +TD  W+   P L  + +SY   L +I               
Sbjct: 231 ----NVELTILKLQHNN-LTDTAWLLNYPGLVEVDLSYN-ELEKI-----MYHPFVKMQR 279

Query: 233 -----------SEIEESQDFFSNLMVIDLRHLPSLTSICCGVVPFPSLQTISVNGCPSLR 281
                        +         L V+DL H   L  +      F  L+ + ++   S+ 
Sbjct: 280 LERLYISNNRLVALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHN-SIV 337

Query: 282 KLPLNS 287
            L L++
Sbjct: 338 TLKLST 343

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 46.7 bits (110), Expect = 6e-06
 Identities = 22/99 (22%), Positives = 43/99 (43%), Gaps = 5/99 (5%)

Query: 6   VLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFV 65
           VL L++  DL  L   + +L+ + +L+LS+ R+  LP  +  L+ L++L+          
Sbjct: 445 VLHLAHK-DLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD 502

Query: 66  PCQVISSLSSLQVFSWFSTELVELHYVDSTSVLAELESL 104
               +++L  LQ     +  L +   +        L  L
Sbjct: 503 G---VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLL 538

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 46.2 bits (110), Expect = 7e-06
 Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 4/81 (4%)

Query: 1   MHALAVLDLSYNLDLVKLPE--AIGKLINLCYLNLSNTRIGQLPTGI-TYLKNLKILRLD 57
           +  L  LD  ++ +L ++ E      L NL YL++S+T       GI   L +L++L++ 
Sbjct: 100 LEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA 158

Query: 58  GMRYLAFVPCQVISSLSSLQV 78
           G  +       + + L +L  
Sbjct: 159 GNSFQENFLPDIFTELRNLTF 179

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 45.8 bits (109), Expect = 9e-06
 Identities = 23/110 (20%), Positives = 36/110 (32%), Gaps = 6/110 (5%)

Query: 1   MHALAVLDLSYN-LDLVKL-PEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDG 58
           +  L  L LS N L       ++     +L YL+LS   +  + +    L+ L+ L    
Sbjct: 51  LTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQH 110

Query: 59  MRYLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLAELESLENIH 108
                     V  SL +L       T            +   L SLE + 
Sbjct: 111 SNLKQMSEFSVFLSLRNLIYLDISHTHTRVA----FNGIFNGLSSLEVLK 156

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 46.2 bits (110), Expect = 7e-06
 Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 4/77 (5%)

Query: 4   LAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITY--LKNLKILRLDGMRY 61
           L  LDLS+N  ++ +      L  L +L+  ++ + Q+     +  L+NL  L +     
Sbjct: 375 LKYLDLSFN-GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH- 432

Query: 62  LAFVPCQVISSLSSLQV 78
                  + + LSSL+V
Sbjct: 433 TRVAFNGIFNGLSSLEV 449

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 46.2 bits (110), Expect = 8e-06
 Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 3/81 (3%)

Query: 1   MHALAVLDLSYN-LDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGI-TYLKNLKILRLDG 58
           + +L VL ++ N      LP+   +L NL +L+LS  ++ QL       L +L++L +  
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMAS 503

Query: 59  MRYLAFVPCQVISSLSSLQVF 79
            + L  VP  +   L+SLQ  
Sbjct: 504 NQ-LKSVPDGIFDRLTSLQKI 523

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 46.2 bits (110), Expect = 8e-06
 Identities = 27/106 (25%), Positives = 41/106 (38%), Gaps = 4/106 (3%)

Query: 1   MHALAVLDLSYNLDLVKLP-EAIGKLINLCYLNLSNTRIGQLPTGI-TYLKNLKILRLDG 58
              L VLDLS   ++  +   A   L +L  L L+   I  L  G  + L +L+ L    
Sbjct: 51  FPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 109

Query: 59  MRYLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLAELESL 104
              LA +    I  L +L+  +     +      +  S L  LE L
Sbjct: 110 TN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 154

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 43.9 bits (104), Expect = 4e-05
 Identities = 19/80 (23%), Positives = 31/80 (38%), Gaps = 2/80 (2%)

Query: 1   MHALAVLDLSYN-LDLVKL-PEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDG 58
           + +L  LDLS N L       ++     +L YL+LS   +  + +    L+ L+ L    
Sbjct: 346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQH 405

Query: 59  MRYLAFVPCQVISSLSSLQV 78
                     V  SL +L  
Sbjct: 406 SNLKQMSEFSVFLSLRNLIY 425

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 29/107 (27%), Positives = 42/107 (39%), Gaps = 8/107 (7%)

Query: 4   LAVLDLSYNLDLVKLPE-AIGKLINLCYLNLSNTRIGQLPTG-ITYLKNLKILRLDGMRY 61
              LDLS+N  L  L   +      L  L+LS   I  +  G    L +L  L L G   
Sbjct: 30  TKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP- 87

Query: 62  LAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLAELESLENIH 108
           +  +     S LSSLQ      T L  L        +  L++L+ ++
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASLE----NFPIGHLKTLKELN 130

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 46.3 bits (109), Expect = 8e-06
 Identities = 29/122 (23%), Positives = 48/122 (39%), Gaps = 27/122 (22%)

Query: 1   MHALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMR 60
           +  +  L L+ N  L  + + +  L NL +L L   +I  L + +  LK LK L L+   
Sbjct: 64  LPNVTKLFLNGN-KLTDI-KPLTNLKNLGWLFLDENKIKDL-SSLKDLKKLKSLSLEHNG 120

Query: 61  YLAFVPCQVISSLSSLQVFSWFSTELVELH----YVDSTSVLAELESLE-------NIHD 109
                    IS ++ L        +L  L+     +   +VL+ L  L+        I D
Sbjct: 121 ---------ISDINGLVHL----PQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISD 167

Query: 110 IS 111
           I 
Sbjct: 168 IV 169

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 43.9 bits (103), Expect = 5e-05
 Identities = 27/135 (20%), Positives = 52/135 (38%), Gaps = 21/135 (15%)

Query: 1   MHALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMR 60
           +  L  L L +N  +  +   +  L  L  L L N +I  + T ++ L  L  L L+  +
Sbjct: 108 LKKLKSLSLEHN-GISDI-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ 164

Query: 61  YLAFVPCQVISSLSSLQVFSWFSTELVELH----YVDSTSVLAELESLENIHDISVTLCN 116
                    IS +  L       T+L  L+    ++     LA L++L+ + ++    C 
Sbjct: 165 ---------ISDIVPLAGL----TKLQNLYLSKNHISDLRALAGLKNLDVL-ELFSQECL 210

Query: 117 VDAVNRVKSSPKLQS 131
              +N   +     +
Sbjct: 211 NKPINHQSNLVVPNT 225

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 43.2 bits (101), Expect = 8e-05
 Identities = 22/107 (20%), Positives = 39/107 (36%), Gaps = 7/107 (6%)

Query: 1   MHALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMR 60
           +  L  L L  N   +     + +L  L  L+L + +I  +   +  L  L+ L L    
Sbjct: 130 LPQLESLYLGNNK--ITDITVLSRLTKLDTLSLEDNQISDIV-PLAGLTKLQNLYLSKNH 186

Query: 61  YLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLAELESLENI 107
                    ++ L +L V   FS E +        S L    +++N 
Sbjct: 187 ISDLRA---LAGLKNLDVLELFSQECLNKPINHQ-SNLVVPNTVKNT 229

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 42.4 bits (99), Expect = 2e-04
 Identities = 23/119 (19%), Positives = 42/119 (35%), Gaps = 27/119 (22%)

Query: 4   LAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLA 63
               +L      V       +L ++  +  +N+ I  +  GI YL N+  L L+G +   
Sbjct: 23  TIKDNLKKKS--VTDAVTQNELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNK--- 76

Query: 64  FVPCQVISSLSSLQVFSWFSTELVELHYVD----STSVLAELESLE-------NIHDIS 111
                 ++ +  L         L  L   +      S L +L+ L+        I DI+
Sbjct: 77  ------LTDIKPLTNL----KNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDIN 125

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 46.2 bits (110), Expect = 8e-06
 Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 2/80 (2%)

Query: 1   MHALAVLDLSYN-LDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGI-TYLKNLKILRLDG 58
           +  L  LD  ++ L  V    A   L  L YL++S T       GI   L +L  L++ G
Sbjct: 398 LEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAG 457

Query: 59  MRYLAFVPCQVISSLSSLQV 78
             +       V ++ ++L  
Sbjct: 458 NSFKDNTLSNVFANTTNLTF 477

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 44/288 (15%), Positives = 86/288 (29%), Gaps = 43/288 (14%)

Query: 1   MHALAVLDLSYNLDLVKLPEAI-----GKLINLCYLNLSNTRIGQLPTGITYLKNLKILR 55
           +  L  +DLSYN  +  +                 L++S   I  +         L  L 
Sbjct: 152 LTNLVHVDLSYN-YIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELT 210

Query: 56  LDGMRYLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLAELESLENIHDISVTLC 115
           L G    + +    + +L+ L V      E  +   ++          +E + D+++   
Sbjct: 211 LRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFE----PSIMEGLCDVTIDEF 266

Query: 116 NVDAVNRVKSSPKLQSCIKRLAVVLMAS---FLLPLDLRMDHLETLEIDRCSLESKNDYF 172
            +   N          C+  ++ + +A      L    +    ++L I RC L+      
Sbjct: 267 RLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLD 326

Query: 173 GDQGRTRTYCFRNLRHLSVKTCPCMTDLKWIRYAPNLQFLYVSYCPRLSEIIGTYESPGT 232
                        L+ L++      +        P+L +L +S    LS           
Sbjct: 327 ----------LPFLKSLTLTMNK-GSISFKKVALPSLSYLDLSRN-ALSFS--------- 365

Query: 233 SEIEESQDFFSNLMVIDLRHL----PSLTSICCGVVPFPSLQTISVNG 276
                    +S+L    LRHL         +    +    LQ +    
Sbjct: 366 -----GCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQH 408

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 43.1 bits (102), Expect = 8e-05
 Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 1/79 (1%)

Query: 1   MHALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTG-ITYLKNLKILRLDGM 59
           +H L+ L L+ N      P +   L +L  L    T++  L +  I  L  LK L +   
Sbjct: 79  LHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHN 138

Query: 60  RYLAFVPCQVISSLSSLQV 78
              +       S+L++L  
Sbjct: 139 FIHSCKLPAYFSNLTNLVH 157

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 43.1 bits (102), Expect = 9e-05
 Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 4/80 (5%)

Query: 1   MHALAVLDLSYNLDLVKL-PEAIGKLINLCYLNLSNTRIGQLPTG-ITYLKNLKILRLDG 58
              L  LDLS   ++  +  +A   L +L  L L+   I     G  + L +L+ L    
Sbjct: 55  FSELQWLDLSRC-EIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVE 113

Query: 59  MRYLAFVPCQVISSLSSLQV 78
            + LA +    I  L +L+ 
Sbjct: 114 TK-LASLESFPIGQLITLKK 132

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 18/80 (22%), Positives = 31/80 (38%), Gaps = 3/80 (3%)

Query: 1   MHALAVLDLSYNLDLVKLPEAIGKLINLCYLNLS-NTRIGQLPTGI-TYLKNLKILRLDG 58
           +  L  LD+SY    +        L +L  L ++ N+      + +     NL  L L  
Sbjct: 423 LEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSK 482

Query: 59  MRYLAFVPCQVISSLSSLQV 78
            + L  +   V  +L  LQ+
Sbjct: 483 CQ-LEQISWGVFDTLHRLQL 501

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 25/107 (23%), Positives = 43/107 (40%), Gaps = 8/107 (7%)

Query: 4   LAVLDLSYNLDLVKLP-EAIGKLINLCYLNLSNTRIGQLPTG-ITYLKNLKILRLDGMRY 61
              +DLS+N  L  L   +      L +L+LS   I  +       L +L  L L G   
Sbjct: 34  TKNIDLSFN-PLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP- 91

Query: 62  LAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLAELESLENIH 108
           +        S L+SL+      T+L  L     +  + +L +L+ ++
Sbjct: 92  IQSFSPGSFSGLTSLENLVAVETKLASLE----SFPIGQLITLKKLN 134

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 40.4 bits (95), Expect = 5e-04
 Identities = 19/81 (23%), Positives = 28/81 (34%), Gaps = 4/81 (4%)

Query: 1   MHALAVLDLSYNLDLVKLPE-AIGKLINLCYLNLSNTRIGQLPTG-ITYLKNLKILRLDG 58
              L  LDLS    L ++       L  L  LN+S+  +  L +     L +L  L    
Sbjct: 472 TTNLTFLDLSKC-QLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSF 530

Query: 59  MRYLAFVPCQVISSLSSLQVF 79
            R +      +     SL  F
Sbjct: 531 NR-IETSKGILQHFPKSLAFF 550

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 45.9 bits (109), Expect = 1e-05
 Identities = 19/109 (17%), Positives = 44/109 (40%), Gaps = 6/109 (5%)

Query: 1   MHALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTG-ITYLKNLKILRLDGM 59
           ++ L VL++S+   L  +       +NL  L++++  +  +P   + +L  L+ L L   
Sbjct: 199 LYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYN 258

Query: 60  RYLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLAELESLENIH 108
             ++ +   ++  L  LQ       +L  +           L  L  ++
Sbjct: 259 P-ISTIEGSMLHELLRLQEIQLVGGQLAVVE----PYAFRGLNYLRVLN 302

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 50/301 (16%), Positives = 99/301 (32%), Gaps = 72/301 (23%)

Query: 1   MHALAVLDLSYNLDLVKLPE-AIGKLINLCYLNLSNTRIGQLPTGI-TYLKNLKILRLDG 58
              L  L+L+ N  +  +   A   L NL  L L + R+  +P G+ T L NL  L +  
Sbjct: 55  FPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISE 113

Query: 59  MRYLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVD 118
            + +  +   +   L +L+       +LV +    S    + L SLE +           
Sbjct: 114 NK-IVILLDYMFQDLYNLKSLEVGDNDLVYI----SHRAFSGLNSLEQLT---------- 158

Query: 119 AVNRVKSSPKLQSCIKRLAVVLMASFLLPLDLRMDHLETLEIDRCSLES-KNDYFGDQGR 177
                     L+ C   L  +   +        +  L  L +   ++ + ++  F     
Sbjct: 159 ----------LEKC--NLTSIPTEAL-----SHLHGLIVLRLRHLNINAIRDYSF----- 196

Query: 178 TRTYCFRNLRHLSVKTCPCMTDL-KWIRYAPNLQFLYVSYCPRLSEIIGTYESPGTSEIE 236
                   L+ L +   P +  +     Y  NL  L +++C  L+ +             
Sbjct: 197 ---KRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC-NLTAV-----PYLA---- 243

Query: 237 ESQDFFSNLMVIDLRHLPSLTSICCGVVPFPSLQTISVNGCPSLRKLPLNSGSAKNSLNA 296
                        +RHL  L  +     P  +++   ++    L+++ L        L  
Sbjct: 244 -------------VRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVG----GQLAV 286

Query: 297 I 297
           +
Sbjct: 287 V 287

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 45.7 bits (109), Expect = 1e-05
 Identities = 49/304 (16%), Positives = 108/304 (35%), Gaps = 59/304 (19%)

Query: 1   MHALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMR 60
           + +L  L     +      + +  L  L  L++S+ ++  +   +  L NL+ L     +
Sbjct: 155 LTSLQQLSFGNQV---TDLKPLANLTTLERLDISSNKVSDIS-VLAKLTNLESLIATNNQ 210

Query: 61  YLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAV 120
                P   +  L++L   S    +L ++        LA L +L ++      L N    
Sbjct: 211 ISDITP---LGILTNLDELSLNGNQLKDI------GTLASLTNLTDLD-----LAN---- 252

Query: 121 NRVKSSPKLQSCIKRLAVVLMA----SFLLPLDLRMDHLETLEIDRCSLESKNDYFGDQG 176
           N++ +   L    K L  + +     S + PL   +  L  LE++   L        +  
Sbjct: 253 NQISNLAPLSGLTK-LTELKLGANQISNISPLA-GLTALTNLELNENQL-EDISPISN-- 307

Query: 177 RTRTYCFRNLRHLSVKTCPCMTDLKWIRYAPNLQFLYVSYCPRLSEIIGTYESPGTSEIE 236
                  +NL +L++     ++D+  +     LQ L+     ++S++             
Sbjct: 308 ------LKNLTYLTLYFNN-ISDISPVSSLTKLQRLFFYNN-KVSDV------------- 346

Query: 237 ESQDFFSNLMVIDLRH--LPSLTSICCGVVPFPSLQTISVNGCPSLRKLPLNSGSAKNSL 294
            S    +N+  +   H  +  LT +         +  + +N        P+N  +  +  
Sbjct: 347 SSLANLTNINWLSAGHNQISDLTPLA----NLTRITQLGLNDQA-WTNAPVNYKANVSIP 401

Query: 295 NAIR 298
           N ++
Sbjct: 402 NTVK 405

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 42/227 (18%), Positives = 81/227 (35%), Gaps = 41/227 (18%)

Query: 4   LAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLA 63
           L  + ++ N   +     +  L NL  L L N +I  +   +  L NL  L L       
Sbjct: 92  LVDILMNNNQ--IADITPLANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNT--- 145

Query: 64  FVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRV 123
                 IS +S+L       T L +L + +  + L  L +L  +  + ++   V  ++ +
Sbjct: 146 ------ISDISALSGL----TSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVL 195

Query: 124 KSSPKLQSCIKRLAVVLMASF-----LLPLDLRMDHLETLEIDRCSLESKNDYFGDQGRT 178
                L+S        L+A+      + PL   + +L+ L ++   L             
Sbjct: 196 AKLTNLES--------LIATNNQISDITPLG-ILTNLDELSLNGNQL-KDIGTLAS---- 241

Query: 179 RTYCFRNLRHLSVKTCPCMTDLKWIRYAPNLQFLYVSYCPRLSEIIG 225
                 NL  L +     +++L  +     L  L +    ++S I  
Sbjct: 242 ----LTNLTDLDLANNQ-ISNLAPLSGLTKLTELKLGAN-QISNISP 282

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 45.5 bits (108), Expect = 1e-05
 Identities = 23/103 (22%), Positives = 42/103 (40%), Gaps = 3/103 (2%)

Query: 1   MHALAVLDLSYNLDLVKLP-EAIGKLINLCYLNLSNTRIGQLPTGI-TYLKNLKILRLDG 58
           + +L  L+L  N  L  +P  A   L  L  L L N  I  +P+     + +L  L L  
Sbjct: 122 LASLNTLELFDN-WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGE 180

Query: 59  MRYLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLAEL 101
           ++ L ++       L +L+  +     + ++  +     L EL
Sbjct: 181 LKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEEL 223

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 3/80 (3%)

Query: 1   MHALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTG--ITYLKNLKILRLDG 58
              L +L+L+ N       +A   L +L  L+L    IGQ  TG     L+N+  + L  
Sbjct: 380 HSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSY 439

Query: 59  MRYLAFVPCQVISSLSSLQV 78
            +    +     + + SLQ 
Sbjct: 440 NK-YLQLTRNSFALVPSLQR 458

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 43.8 bits (104), Expect = 6e-05
 Identities = 19/79 (24%), Positives = 27/79 (34%), Gaps = 2/79 (2%)

Query: 1   MHALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTG-ITYLKNLKILRLDGM 59
              L  LD+ +N      PE   KL  L  LNL +  + QL      +  NL  L L   
Sbjct: 48  YSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSN 107

Query: 60  RYLAFVPCQVISSLSSLQV 78
             +  +         +L  
Sbjct: 108 S-IQKIKNNPFVKQKNLIT 125

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 19/107 (17%), Positives = 43/107 (40%), Gaps = 8/107 (7%)

Query: 4   LAVLDLSYNLDLVKL-PEAIGKLINLCYLNLSNTRIGQLPTG-ITYLKNLKILRLDGMRY 61
           + VL+L++N  L +L      +   L  L++    I +L       L  LK+L L     
Sbjct: 27  ITVLNLTHNQ-LRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE- 84

Query: 62  LAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLAELESLENIH 108
           L+ +  +  +  ++L      S  + ++      +   + ++L  + 
Sbjct: 85  LSQLSDKTFAFCTNLTELHLMSNSIQKIK----NNPFVKQKNLITLD 127

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 41.1 bits (97), Expect = 3e-04
 Identities = 23/114 (20%), Positives = 43/114 (37%), Gaps = 13/114 (11%)

Query: 4   LAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTG-ITYLKNLKILRLDG---- 58
           L +LDLSYN   V   ++   L  L Y  L    I  L +  +  L N++ L L      
Sbjct: 250 LTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTK 309

Query: 59  ----MRYLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLAELESLENIH 108
               +  L  +       L  L+  +    ++  +     +++   L +L+ + 
Sbjct: 310 QSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIK----SNMFTGLINLKYLS 359

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 45.7 bits (109), Expect = 1e-05
 Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 4/81 (4%)

Query: 1   MHALAVLDLSYNLDLV-KLPEAIGKLINLCYLNLSNTRI-GQLPTGITYLKNLKILRLDG 58
           +  L  L L +N  L  ++P  +    NL +++LSN R+ G++P  I  L+NL IL+L  
Sbjct: 465 VKTLETLILDFND-LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSN 523

Query: 59  MRYLAFVPCQVISSLSSLQVF 79
             +   +P + +    SL   
Sbjct: 524 NSFSGNIPAE-LGDCRSLIWL 543

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 42.6 bits (101), Expect = 2e-04
 Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 4/82 (4%)

Query: 1   MHALAVLDLSYNLDLV-KLPEAIGKLINLCYLNLSNTRI-GQLPTGITYLKNLKILRLDG 58
           +  L  L L  N+ L  ++P+ +  +  L  L L    + G++P+G++   NL  + L  
Sbjct: 441 LSKLRDLKLWLNM-LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSN 499

Query: 59  MRYLAFVPCQVISSLSSLQVFS 80
            R    +P   I  L +L +  
Sbjct: 500 NRLTGEIPKW-IGRLENLAILK 520

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 41.8 bits (99), Expect = 2e-04
 Identities = 17/83 (20%), Positives = 28/83 (33%), Gaps = 4/83 (4%)

Query: 1   MHALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRI-GQLPTG--ITYLKNLKILRLD 57
           +  L  L LS +     +        +L  L+LS   + G + T   +     LK L + 
Sbjct: 76  LTGLESLFLSNSHINGSVSG-FKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVS 134

Query: 58  GMRYLAFVPCQVISSLSSLQVFS 80
                          L+SL+V  
Sbjct: 135 SNTLDFPGKVSGGLKLNSLEVLD 157

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 7/86 (8%)

Query: 4   LAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLA 63
           L  +    N+ L +LPE +  L  L  +   N  +  LP     L+ L +       YL 
Sbjct: 217 LESIVAGNNI-LEELPE-LQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDN----YLT 270

Query: 64  FVPCQVISSLSSLQVFSWFSTELVEL 89
            +P ++  SL+ L V     + L EL
Sbjct: 271 DLP-ELPQSLTFLDVSENIFSGLSEL 295

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 44.4 bits (106), Expect = 2e-05
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 2/57 (3%)

Query: 4   LAVLDLSYNLDLV-KLPEAIGKLINLCYLNLSNTRI-GQLPTGITYLKNLKILRLDG 58
           L  L +    +LV  +P AI KL  L YL +++T + G +P  ++ +K L  L    
Sbjct: 78  LNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSY 134

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 42.5 bits (101), Expect = 1e-04
 Identities = 18/82 (21%), Positives = 32/82 (39%), Gaps = 7/82 (8%)

Query: 4   LAVLDLSYNLDL---VKLPEAIGKLINLCYLNLSNTR--IGQLPTGITYLKNLKILRLDG 58
           +  LDLS   +L     +P ++  L  L +L +      +G +P  I  L  L  L +  
Sbjct: 52  VNNLDLSGL-NLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITH 110

Query: 59  MRYLAFVPCQVISSLSSLQVFS 80
                 +P   +S + +L    
Sbjct: 111 TNVSGAIP-DFLSQIKTLVTLD 131

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 43.9 bits (104), Expect = 4e-05
 Identities = 17/83 (20%), Positives = 34/83 (40%), Gaps = 7/83 (8%)

Query: 1   MHALAVLDLSYNLDLVKLPE-AIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDG- 58
              L  L L +N  +  +   ++  L  L  L+L N ++ ++P G+  LK L+++ L   
Sbjct: 216 YSKLYRLGLGHNQ-IRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTN 274

Query: 59  -MRYL---AFVPCQVISSLSSLQ 77
            +  +    F P       +   
Sbjct: 275 NITKVGVNDFCPVGFGVKRAYYN 297

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 43.5 bits (103), Expect = 5e-05
 Identities = 13/79 (16%), Positives = 31/79 (39%), Gaps = 4/79 (5%)

Query: 1   MHALAVLDLSYN-LDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGM 59
           +  +  +++  N L+           + L YL +S  ++  +P  +   + L  L LD  
Sbjct: 146 LRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDL--PETLNELHLDHN 203

Query: 60  RYLAFVPCQVISSLSSLQV 78
           + +  +  + +   S L  
Sbjct: 204 K-IQAIELEDLLRYSKLYR 221

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 42.6 bits (101), Expect = 4e-05
 Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 2/58 (3%)

Query: 1   MHALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDG 58
           +  +  +DLSYN  +  +   +  L  L  LN+    +     GI     L  L    
Sbjct: 135 LPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHDY-RGIEDFPKLNQLYAFS 190

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 42.6 bits (101), Expect = 5e-05
 Identities = 17/110 (15%), Positives = 34/110 (30%), Gaps = 17/110 (15%)

Query: 4   LAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQL-PTGITYLKNLKILRLDGMRYL 62
           L  L +            +  L +L  L++S++       T I  L  +  + L      
Sbjct: 90  LERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSY---- 145

Query: 63  AFVPCQVISSLSSLQVFSWFSTELVELH----YVDSTSVLAELESLENIH 108
                  I+ +  L+       EL  L+     V     + +   L  ++
Sbjct: 146 ----NGAITDIMPLKTL----PELKSLNIQFDGVHDYRGIEDFPKLNQLY 187

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 43.7 bits (103), Expect = 5e-05
 Identities = 41/302 (13%), Positives = 87/302 (28%), Gaps = 35/302 (11%)

Query: 6   VLDLSYNLDLVKLPE-AIGKLINLCYLNLSNTRIGQLPTGI-------TYL--------- 48
            L LS N  + +L    I  L  L  L LS+ RI  L   +        YL         
Sbjct: 56  ALSLSQNS-ISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQN 114

Query: 49  ------KNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLAELE 102
                  +L+ L L    +     C+   +L+ L      + +  +L        L  + 
Sbjct: 115 ISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD-------LLPVA 167

Query: 103 SLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPLDLRMDHLETLEIDR 162
            L     +   +         +S     + +  L     + F + +++ ++ L  L++  
Sbjct: 168 HLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSN 227

Query: 163 CSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDLKWIRYAPNLQFLYVSYCPRLSE 222
             L  +N        +       L +++++      +  W       QF +      L+ 
Sbjct: 228 IKLNDENCQRLMTFLSELTRGPTLLNVTLQHI----ETTWKCSVKLFQFFWPRPVEYLNI 283

Query: 223 IIGTYESPGTSEIEESQDFFSNLMVIDLRHLPSLTSICCGVVPFPSLQTISVNGCPSLRK 282
              T       E     +     ++I+             +    +   I +        
Sbjct: 284 YNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPF 343

Query: 283 LP 284
           + 
Sbjct: 344 IH 345

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 44.0 bits (104), Expect = 5e-05
 Identities = 25/107 (23%), Positives = 43/107 (40%), Gaps = 3/107 (2%)

Query: 1   MHALAVLDLSYNLDLVKL-PEAIGKLINLCYLNLSNTRIGQLPTGI-TYLKNLKILRLDG 58
           +  L +L+L      + +  EA   L NL  L+L +++I  L       L +L  LRL  
Sbjct: 47  LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYF 106

Query: 59  MR-YLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLAELESL 104
                A +      +L +L        ++  L+   S   L  L+S+
Sbjct: 107 CGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSI 153

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 42.8 bits (101), Expect = 8e-05
 Identities = 25/111 (22%), Positives = 42/111 (37%), Gaps = 8/111 (7%)

Query: 1   MHALAVLDLSYNLDLVKLPE-AIGKLINLCYLNLSNTRIGQLPTGI-TYLKNLKILRLDG 58
              L  L L+ N  +  + E +   L +L +L+LS   +  L +     L +L  L L G
Sbjct: 75  CVNLQALVLTSNG-INTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLG 133

Query: 59  MRYLAFVPCQVISSLSSLQVFSWFS-TELVELHYVDSTSVLAELESLENIH 108
             Y       + S L+ LQ+    +     ++         A L  LE + 
Sbjct: 134 NPYKTLGETSLFSHLTKLQILRVGNMDTFTKI----QRKDFAGLTFLEELE 180

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 41.3 bits (97), Expect = 3e-04
 Identities = 16/114 (14%), Positives = 39/114 (34%), Gaps = 7/114 (6%)

Query: 1   MHALAVLDLSYNLDLVKLPE-AIGKLINLCYLNLSNTRIGQLPTGI-TYLKNLKILRLDG 58
           +  L +L +       K+       L  L  L +  + +          ++N+  L L  
Sbjct: 148 LTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHM 207

Query: 59  MRYLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSV----LAELESLENIH 108
            +    +    +   SS++      T+L   H+ + ++     L +  +  N+ 
Sbjct: 208 -KQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVK 260

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 42.5 bits (100), Expect = 1e-04
 Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 4/79 (5%)

Query: 1   MHALAVLDLSYNLDLVKLPEAI-GKLINLCYLNLSNTRIGQLPTGI-TYLKNLKILRLDG 58
           +  L  LDLS N  L  L E +   L  L  L L N  I  +       +  L+ L L  
Sbjct: 87  VPNLRYLDLSSNH-LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQ 145

Query: 59  MRYLAFVPCQVISSLSSLQ 77
            + ++  P ++I   + L 
Sbjct: 146 NQ-ISRFPVELIKDGNKLP 163

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 41.9 bits (99), Expect = 1e-04
 Identities = 24/111 (21%), Positives = 42/111 (37%), Gaps = 7/111 (6%)

Query: 4   LAVLDLSYNLDLVKLPE-AIGKLINLCYLNLS-NTRIGQLPTGI-TYLKNLKILRLDGMR 60
              L L     L  +P  A   L N+  + +S +  + QL +     L  +  + +   R
Sbjct: 33  TQTLKLIETH-LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91

Query: 61  YLAFVPCQVISSLSSLQVFSWFSTELVEL---HYVDSTSVLAELESLENIH 108
            L ++    +  L  L+    F+T L        V ST +   LE  +N +
Sbjct: 92  NLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPY 142

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 41.9 bits (99), Expect = 1e-04
 Identities = 31/108 (28%), Positives = 44/108 (40%), Gaps = 8/108 (7%)

Query: 3   ALAVLDLSYNLDLVKLPEAI-GKLINLCYLNLSNTRIGQLPTGI-TYLKNLKILRLDGMR 60
            LA L L  N  L  LP  +   L  L YL+L    +  LP G+   L +LK LRL   +
Sbjct: 110 NLAELRLDRN-QLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQ 168

Query: 61  YLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLAELESLENIH 108
            L  VP      L+ L+     + +L  +           LE L+ + 
Sbjct: 169 -LKRVPEGAFDKLTELKTLKLDNNQLKRV----PEGAFDSLEKLKMLQ 211

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 40.0 bits (94), Expect = 5e-04
 Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 4/75 (5%)

Query: 6   VLDLSYNLDLVKLPE-AIGKLINLCYLNLSNTRIGQLPTGI-TYLKNLKILRLDGMRYLA 63
            LDL  N  L  LP  A  +L  L  L L++ ++  LP GI   LKNL+ L +     L 
Sbjct: 41  KLDLQSNK-LSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD-NKLQ 98

Query: 64  FVPCQVISSLSSLQV 78
            +P  V   L +L  
Sbjct: 99  ALPIGVFDQLVNLAE 113

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 40.0 bits (94), Expect = 5e-04
 Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 4/77 (5%)

Query: 3   ALAVLDLSYNLDLVKLPEAI-GKLINLCYLNLSNTRIGQLPTGI-TYLKNLKILRLDGMR 60
            L +L L+ N  L  LP  I  +L NL  L +++ ++  LP G+   L NL  LRLD  +
Sbjct: 62  KLRLLYLNDN-KLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQ 120

Query: 61  YLAFVPCQVISSLSSLQ 77
            L  +P +V  SL+ L 
Sbjct: 121 -LKSLPPRVFDSLTKLT 136

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 42.1 bits (100), Expect = 1e-04
 Identities = 15/58 (25%), Positives = 21/58 (36%), Gaps = 1/58 (1%)

Query: 1   MHALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDG 58
           +  L  L L+ N    +  E IG L NL  L LS   I  +   +  L  +       
Sbjct: 286 LSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIR-PLASLSKMDSADFAN 342

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 41.8 bits (99), Expect = 2e-04
 Identities = 9/58 (15%), Positives = 20/58 (34%), Gaps = 2/58 (3%)

Query: 1   MHALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDG 58
           +  L  L L+ +   +     +  L  +  LNL         + ++ +  L  L +  
Sbjct: 109 LTNLRELYLNEDN--ISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTE 164

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 40.2 bits (95), Expect = 6e-04
 Identities = 21/105 (20%), Positives = 42/105 (40%), Gaps = 12/105 (11%)

Query: 4   LAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLA 63
                L      V       +L ++  L ++  ++  +  GI YL NL+ L L+G +   
Sbjct: 24  GIRAVLQKAS--VTDVVTQEELESITKLVVAGEKVASIQ-GIEYLTNLEYLNLNGNQITD 80

Query: 64  FVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLAELESLENIH 108
             P   +S+L  L      + ++ ++      S L  L +L  ++
Sbjct: 81  ISP---LSNLVKLTNLYIGTNKITDI------SALQNLTNLRELY 116

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 41.9 bits (99), Expect = 1e-04
 Identities = 24/74 (32%), Positives = 31/74 (41%), Gaps = 4/74 (5%)

Query: 6   VLDLSYNLDLVKLPE-AIGKLINLCYLNLSNTRIGQLPTGI-TYLKNLKILRLDGMRYLA 63
            LDLS+N  L  L   +      L  L+LS   I  +  G    L +L  L L G   + 
Sbjct: 32  NLDLSFNP-LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQ 89

Query: 64  FVPCQVISSLSSLQ 77
            +     S LSSLQ
Sbjct: 90  SLALGAFSGLSSLQ 103

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 28/122 (22%), Positives = 48/122 (39%), Gaps = 27/122 (22%)

Query: 1   MHALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMR 60
           +  +  L L+ N  L  + + +  L NL +L L   ++  L + +  LK LK L L+   
Sbjct: 67  LPNVTKLFLNGNK-LTDI-KPLANLKNLGWLFLDENKVKDL-SSLKDLKKLKSLSLEHNG 123

Query: 61  YLAFVPCQVISSLSSLQVFSWFSTELVELH----YVDSTSVLAELESLE-------NIHD 109
                    IS ++ L        +L  L+     +   +VL+ L  L+        I D
Sbjct: 124 ---------ISDINGLVHL----PQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISD 170

Query: 110 IS 111
           I 
Sbjct: 171 IV 172

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 40.4 bits (95), Expect = 4e-04
 Identities = 25/112 (22%), Positives = 44/112 (39%), Gaps = 20/112 (17%)

Query: 1   MHALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMR 60
           +  L  L L +N   +     +  L  L  L L N +I  + T ++ L  L  L L+  +
Sbjct: 111 LKKLKSLSLEHNG--ISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ 167

Query: 61  YLAFVPCQVISSLSSLQVFSWFSTELVELH----YVDSTSVLAELESLENIH 108
                    IS +  L       T+L  L+    ++     LA L++L+ + 
Sbjct: 168 ---------ISDIVPLAGL----TKLQNLYLSKNHISDLRALAGLKNLDVLE 206

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 41.3 bits (97), Expect = 3e-04
 Identities = 25/107 (23%), Positives = 47/107 (43%), Gaps = 8/107 (7%)

Query: 4   LAVLDLSYNLDLVKLPE-AIGKLINLCYLNLSNTRIGQLPTGI-TYLKNLKILRLDGMRY 61
           L  L L+ N ++ K+ + A   L +L  LNLS   +G + + +   L  L++L L     
Sbjct: 301 LEQLTLAQN-EINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNH- 358

Query: 62  LAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLAELESLENIH 108
           +  +  Q    L +L+  +  + +L  +       +   L SL+ I 
Sbjct: 359 IRALGDQSFLGLPNLKELALDTNQLKSV----PDGIFDRLTSLQKIW 401

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 40.4 bits (95), Expect = 3e-04
 Identities = 16/77 (20%), Positives = 31/77 (40%), Gaps = 4/77 (5%)

Query: 3   ALAVLDLSYNLDLVKLPEAI-GKLINLCYLNLSNTRIGQLPTGI-TYLKNLKILRLDGMR 60
            +  + L+ N  L  +   +   L +L  L L + RI  +       L ++++L L   +
Sbjct: 82  GVNEILLTSNR-LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQ 140

Query: 61  YLAFVPCQVISSLSSLQ 77
            +  V      +L SL 
Sbjct: 141 -ITTVAPGAFDTLHSLS 156

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 41.0 bits (96), Expect = 4e-04
 Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 4/73 (5%)

Query: 6  VLDLSYNLDLVKLPE-AIGKLINLCYLNLSNTRIGQLPTGI-TYLKNLKILRLDGMRYLA 63
          +L++S N  + +L    I  L  L  L +S+ RI  L   +  + + L+ L L   + L 
Sbjct: 25 ILNISQNY-ISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK-LV 82

Query: 64 FVPCQVISSLSSL 76
           + C    +L  L
Sbjct: 83 KISCHPTVNLKHL 95

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 40.4 bits (95), Expect = 5e-04
 Identities = 27/111 (24%), Positives = 44/111 (39%), Gaps = 20/111 (18%)

Query: 1   MHALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMR 60
           +  L VL L  N  +  +   +  L NL YL++ N ++  L   +  L  L  L+ D  +
Sbjct: 128 LSNLQVLYLDLNQ-ITNI-SPLAGLTNLQYLSIGNAQVSDLT-PLANLSKLTTLKADDNK 184

Query: 61  YLAFVPCQVISSLSSLQVFSWFSTELVELH----YVDSTSVLAELESLENI 107
                    IS +S L         L+E+H     +   S LA   +L  +
Sbjct: 185 ---------ISDISPLASL----PNLIEVHLKNNQISDVSPLANTSNLFIV 222

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 40.1 bits (94), Expect = 7e-04
 Identities = 25/118 (21%), Positives = 48/118 (40%), Gaps = 19/118 (16%)

Query: 1   MHALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMR 60
           ++ L  L+L  N   +     +  L  +  L LS   +  +   I  L+++K L L   +
Sbjct: 62  LNNLIGLELKDNQ--ITDLAPLKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTSTQ 118

Query: 61  YLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLAELESLE-------NIHDIS 111
                P   ++ LS+LQV      ++  +      S LA L +L+        + D++
Sbjct: 119 ITDVTP---LAGLSNLQVLYLDLNQITNI------SPLAGLTNLQYLSIGNAQVSDLT 167

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 39.7 bits (93), Expect = 5e-04
 Identities = 28/75 (37%), Positives = 39/75 (52%), Gaps = 3/75 (4%)

Query: 4   LAVLDLSYNLDLVKLPEAI-GKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYL 62
           L VLDL  N  L  LP A+  +L++L  L +   ++ +LP GI  L +L  L LD  + L
Sbjct: 90  LTVLDLGTN-QLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQ-L 147

Query: 63  AFVPCQVISSLSSLQ 77
             +P      LSSL 
Sbjct: 148 KSIPHGAFDRLSSLT 162

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 40.1 bits (94), Expect = 5e-04
 Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 3/75 (4%)

Query: 3   ALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYL 62
            L  L+L    +L KL    G L  L  L+LS+ ++  LP     L  L +L +   R L
Sbjct: 56  RLTQLNLDRA-ELTKLQ-VDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR-L 112

Query: 63  AFVPCQVISSLSSLQ 77
             +P   +  L  LQ
Sbjct: 113 TSLPLGALRGLGELQ 127

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 39.6 bits (93), Expect = 5e-04
 Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 3/76 (3%)

Query: 6   VLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGI-TYLKNLKILRLDGMRYLAF 64
            L L  N     +P+ +    +L  ++LSN RI  L     + +  L  L L   R L  
Sbjct: 35  ELYLDGN-QFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR-LRC 92

Query: 65  VPCQVISSLSSLQVFS 80
           +P +    L SL++ S
Sbjct: 93  IPPRTFDGLKSLRLLS 108

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 39.2 bits (92), Expect = 7e-04
 Identities = 23/108 (21%), Positives = 48/108 (44%), Gaps = 8/108 (7%)

Query: 3   ALAVLDLSYNLDLVKLPEAI-GKLINLCYLNLSNTRIGQLPTGI-TYLKNLKILRLDGMR 60
            L  +DLS N  + +L       L +L  L L   +I +LP  +   L +L++L L+  +
Sbjct: 57  KLRRIDLSNN-QISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANK 115

Query: 61  YLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLAELESLENIH 108
            +  +       L +L + S +  +L  +    +    + L +++ +H
Sbjct: 116 -INCLRVDAFQDLHNLNLLSLYDNKLQTI----AKGTFSPLRAIQTMH 158

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.2 bits (93), Expect = 8e-04
 Identities = 58/381 (15%), Positives = 115/381 (30%), Gaps = 113/381 (29%)

Query: 6   VLDLSYNLDLVKL------PEAIGKLINLCYLNLSN----------TR---IGQLPTGIT 46
           VL ++Y   +  +      P  + ++       L N          +R     +L   + 
Sbjct: 86  VLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALL 145

Query: 47  YLKNLKILRLDGMR-----YLAFVPCQ--VISSLSSLQVFSWFSTELVELHYVDSTSVLA 99
            L+  K + +DG+      ++A   C    +      ++F W +     L   +S   + 
Sbjct: 146 ELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF-WLN-----LKNCNSPETV- 198

Query: 100 ELESLENI-HDISVTLC-NVDAVNRVKSSPKLQSCIKRLAVVLMASF----LLPLDLRMD 153
            LE L+ + + I        D  + +K   ++ S    L  +L +      LL L    +
Sbjct: 199 -LEMLQKLLYQIDPNWTSRSDHSSNIKL--RIHSIQAELRRLLKSKPYENCLLVLL---N 252

Query: 154 -----HLETLEIDRCS--LESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTD------- 199
                      +  C   L ++     D     T    +L H S      +T        
Sbjct: 253 VQNAKAWNAFNL-SCKILLTTRFKQVTDFLSAATTTHISLDHHS----MTLTPDEVKSLL 307

Query: 200 LKWIRYAPN---LQFLYVSYCPRLSEIIG-----------TYESPGTSEIEES-QDFFSN 244
           LK++   P     + L  +  PR   II             ++     ++    +   + 
Sbjct: 308 LKYLDCRPQDLPREVLTTN--PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNV 365

Query: 245 LMVIDLRHLPSLTSICCGVVPFPSLQTISVNGCPS--LRKLPLNSGSAKNSLNAIRGSRE 302
           L   + R +    S+      FP     S +  P+  L  +                   
Sbjct: 366 LEPAEYRKMFDRLSV------FPP----SAH-IPTILLSLI------------------- 395

Query: 303 WWDRLEWEDEDTRNVFASKFL 323
           W+D ++ +     N      L
Sbjct: 396 WFDVIKSDVMVVVNKLHKYSL 416

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 38.7 bits (90), Expect = 9e-04
 Identities = 14/79 (17%), Positives = 35/79 (44%), Gaps = 12/79 (15%)

Query: 151 RMDHLETLEIDRCSLESKNDYFGDQGRTR----TYCFRNLRHLSVKTCPCMTD--LKWIR 204
            + ++E + + +C       Y  D    R        +++  + + +C  +TD  +  + 
Sbjct: 83  GLQYVEKIRLCKC------HYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH 136

Query: 205 YAPNLQFLYVSYCPRLSEI 223
           +  NL++L++S  P + E 
Sbjct: 137 HFRNLKYLFLSDLPGVKEK 155

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	325
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.92
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.92
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.91
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.91
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.9
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.9
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.9
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.9
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.9
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.9
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.89
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.89
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.89
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.88
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.88
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.88
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.88
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.88
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.88
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.88
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.88
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.88
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.88
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.87
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.87
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.87
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.87
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.87
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.87
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.87
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.86
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.86
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.86
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.86
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.86
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.86
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.86
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.86
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.85
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.84
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.84
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.84
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.84
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.84
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.84
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.84
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.84
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.83
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.83
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.83
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.83
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.83
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.82
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.82
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.81
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.81
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.8
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.8
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.8
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.79
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.79
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.79
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.79
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.77
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.77
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.77
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.77
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.76
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.76
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.75
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.75
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.74
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.74
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.74
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.73
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.73
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.72
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.72
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.72
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.71
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.71
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.71
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.7
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.7
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.7
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.69
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.69
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.69
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.68
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.67
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.66
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.66
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.65
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.65
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.65
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.63
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.63
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.59
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.59
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.57
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.57
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.56
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.56
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.55
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.51
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.51
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.51
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.49
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.47
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.46
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.45
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.44
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.44
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.43
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.42
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.41
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.39
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.38
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.38
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.36
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.32
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.32
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.31
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.31
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.3
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.28
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.22
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.21
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.2
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.19
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.18
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.18
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.17
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.13
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.13
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.11
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.1
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.03
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.95
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.93
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.89
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.88
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.83
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.81
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.71
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.68
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.62
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.59
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.49
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.49
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.32
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.31
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.13
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.07
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.98
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.9
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.87
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.58
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.56
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.78
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	96.73
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	95.64
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	94.15
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	93.67

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.92  E-value=2.5e-24  Score=188.88  Aligned_cols=236  Identities=17%  Similarity=0.232  Sum_probs=140.5

Q ss_pred             ccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEecccceeeeeeccCccchhhhccCC
Q 048462           26 INLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLAELESLE  105 (325)
Q Consensus        26 ~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~  105 (325)
                      .++++|+++++.++.+|..+.++++|++|++++|.+. .+|.. +..+++|++|++++|.+       . .++..+..++
T Consensus        81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~-~~~l~~L~~L~Ls~n~l-------~-~lp~~l~~l~  150 (328)
T 4fcg_A           81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDT-MQQFAGLETLTLARNPL-------R-ALPASIASLN  150 (328)
T ss_dssp             TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC-CCCSC-GGGGTTCSEEEEESCCC-------C-CCCGGGGGCT
T ss_pred             cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc-chhHH-HhccCCCCEEECCCCcc-------c-cCcHHHhcCc
Confidence            5666666666666666666666666666666665544 55655 66666666666666665       2 4555666666


Q ss_pred             CcceEEEEecCcccccccccCccccCCceEEEEceeeeecccccccCCCCCeEEEcCCCCceeccccCCCCCcccccccc
Q 048462          106 NIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPLDLRMDHLETLEIDRCSLESKNDYFGDQGRTRTYCFRN  185 (325)
Q Consensus       106 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~  185 (325)
                      +|+.|++++|.....-        +..+....+.       ..+..+++|++|++++|....+      +..+  ..+++
T Consensus       151 ~L~~L~L~~n~~~~~~--------p~~~~~~~~~-------~~~~~l~~L~~L~L~~n~l~~l------p~~l--~~l~~  207 (328)
T 4fcg_A          151 RLRELSIRACPELTEL--------PEPLASTDAS-------GEHQGLVNLQSLRLEWTGIRSL------PASI--ANLQN  207 (328)
T ss_dssp             TCCEEEEEEETTCCCC--------CSCSEEEC-C-------CCEEESTTCCEEEEEEECCCCC------CGGG--GGCTT
T ss_pred             CCCEEECCCCCCcccc--------ChhHhhccch-------hhhccCCCCCEEECcCCCcCcc------hHhh--cCCCC
Confidence            6777776665433210        0001111000       1144566666666666654211      1111  44667


Q ss_pred             ccEEEecCCCCCCccc-cccCCCCccEEEEeccCCchhhcccCCCCCCCccccccccCCcccEEeccCCCCcceeccCcc
Q 048462          186 LRHLSVKTCPCMTDLK-WIRYAPNLQFLYVSYCPRLSEIIGTYESPGTSEIEESQDFFSNLMVIDLRHLPSLTSICCGVV  264 (325)
Q Consensus       186 L~~L~l~~~~~l~~l~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~  264 (325)
                      |++|++++| .++.++ .+..+++|++|++++|.....+.            ..++.+++|+.|++.+|.....++....
T Consensus       208 L~~L~L~~N-~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p------------~~~~~l~~L~~L~L~~n~~~~~~p~~~~  274 (328)
T 4fcg_A          208 LKSLKIRNS-PLSALGPAIHHLPKLEELDLRGCTALRNYP------------PIFGGRAPLKRLILKDCSNLLTLPLDIH  274 (328)
T ss_dssp             CCEEEEESS-CCCCCCGGGGGCTTCCEEECTTCTTCCBCC------------CCTTCCCCCCEEECTTCTTCCBCCTTGG
T ss_pred             CCEEEccCC-CCCcCchhhccCCCCCEEECcCCcchhhhH------------HHhcCCCCCCEEECCCCCchhhcchhhh
Confidence            777777776 555543 45567777777777766544332            3566777777777777766677776666


Q ss_pred             cCCCccEEeeeCCCCCCCCCCCCCCcccceeEEechHHHHhhcc
Q 048462          265 PFPSLQTISVNGCPSLRKLPLNSGSAKNSLNAIRGSREWWDRLE  308 (325)
Q Consensus       265 ~~~~L~~L~l~~c~~l~~ip~~~~~~~~~l~~~~~~~~~~~~~~  308 (325)
                      .+++|+.|++++|+.++.+|..+..+ ..+..+.......+.++
T Consensus       275 ~l~~L~~L~L~~n~~~~~iP~~l~~L-~~L~~l~l~~~~~~~l~  317 (328)
T 4fcg_A          275 RLTQLEKLDLRGCVNLSRLPSLIAQL-PANCIILVPPHLQAQLD  317 (328)
T ss_dssp             GCTTCCEEECTTCTTCCCCCGGGGGS-CTTCEEECCGGGSCC--
T ss_pred             cCCCCCEEeCCCCCchhhccHHHhhc-cCceEEeCCHHHHHHHh
Confidence            77777777777777777777777666 56666666655544444

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.92  E-value=8e-24  Score=187.15  Aligned_cols=249  Identities=15%  Similarity=0.157  Sum_probs=141.8

Q ss_pred             CCCCcEEecCCCCCCCcCchhhhCcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEE
Q 048462            1 MHALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFS   80 (325)
Q Consensus         1 ~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~   80 (325)
                      +++|++|++++| .++.++. +..+++|++|++++|.++.++ .+.++++|++|++++|... .++.  +..+++|++|+
T Consensus        65 ~~~L~~L~l~~n-~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n~i~-~~~~--~~~l~~L~~L~  138 (347)
T 4fmz_A           65 LTNLEYLNLNGN-QITDISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDNIS-DISP--LANLTKMYSLN  138 (347)
T ss_dssp             CTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTTSCCC-CCGG--GTTCTTCCEEE
T ss_pred             cCCccEEEccCC-ccccchh-hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECcCCccc-Cchh--hccCCceeEEE
Confidence            578889999988 7888766 888888888888888887775 4788888888888886543 3444  67788888888


Q ss_pred             ecccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccccccCCCCCeEEE
Q 048462           81 WFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPLDLRMDHLETLEI  160 (325)
Q Consensus        81 l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~l~~L~~L~l  160 (325)
                      +++|..       . ..+..+..+++|+.|++.++.......+.    ...+|+.|+++++....++.+..+++|+.+++
T Consensus       139 l~~n~~-------~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~----~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l  206 (347)
T 4fmz_A          139 LGANHN-------L-SDLSPLSNMTGLNYLTVTESKVKDVTPIA----NLTDLYSLSLNYNQIEDISPLASLTSLHYFTA  206 (347)
T ss_dssp             CTTCTT-------C-CCCGGGTTCTTCCEEECCSSCCCCCGGGG----GCTTCSEEECTTSCCCCCGGGGGCTTCCEEEC
T ss_pred             CCCCCC-------c-ccccchhhCCCCcEEEecCCCcCCchhhc----cCCCCCEEEccCCcccccccccCCCccceeec
Confidence            888754       1 22333666777777777776655544322    22346666666555545555555666666666


Q ss_pred             cCCCCceeccccCC--------------CCCccccccccccEEEecCCCCCCccccccCCCCccEEEEeccCCchhhccc
Q 048462          161 DRCSLESKNDYFGD--------------QGRTRTYCFRNLRHLSVKTCPCMTDLKWIRYAPNLQFLYVSYCPRLSEIIGT  226 (325)
Q Consensus       161 ~~~~~~~~~~~~~~--------------~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~  226 (325)
                      ++|...+... +..              .+..+...+++|++|++++| .+++++.+..+++|++|++++|.. +.+   
T Consensus       207 ~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~n~l-~~~---  280 (347)
T 4fmz_A          207 YVNQITDITP-VANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTN-QISDINAVKDLTKLKMLNVGSNQI-SDI---  280 (347)
T ss_dssp             CSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSCC-CCC---
T ss_pred             ccCCCCCCch-hhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCC-ccCCChhHhcCCCcCEEEccCCcc-CCC---
Confidence            6555421100 000              00000123444444444444 344444444444444444444421 111   


Q ss_pred             CCCCCCCccccccccCCcccEEeccCCCCcceeccCcccCCCccEEeeeCCCCCCCCC
Q 048462          227 YESPGTSEIEESQDFFSNLMVIDLRHLPSLTSICCGVVPFPSLQTISVNGCPSLRKLP  284 (325)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~ip  284 (325)
                                ..+..+++|+.|++++|.-....+.....+++|+.|++++| .++.++
T Consensus       281 ----------~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n-~l~~~~  327 (347)
T 4fmz_A          281 ----------SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQN-HITDIR  327 (347)
T ss_dssp             ----------GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSS-SCCCCG
T ss_pred             ----------hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCC-cccccc
Confidence                      13455566666666665322222222334566666666666 355443

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.91  E-value=3e-23  Score=191.33  Aligned_cols=250  Identities=22%  Similarity=0.255  Sum_probs=139.0

Q ss_pred             CCcEEecCCCCCCCcC-chhhhCcccCceecCCCCccccc-ChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEE
Q 048462            3 ALAVLDLSYNLDLVKL-PEAIGKLINLCYLNLSNTRIGQL-PTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFS   80 (325)
Q Consensus         3 ~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~l~~~~l~~l-p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~   80 (325)
                      ++++|++++| .++.+ |..+.++++|++|++++|.++.+ |..+.++++|++|++++|.+. .+|...+.++++|++|+
T Consensus        33 ~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~  110 (477)
T 2id5_A           33 ETRLLDLGKN-RIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLD  110 (477)
T ss_dssp             TCSEEECCSS-CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCTTSSTTCTTCCEEE
T ss_pred             CCcEEECCCC-ccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCC-ccCcccccCCCCCCEEE
Confidence            4556666666 55544 34555566666666666655433 444555666666666554332 33332245555666666


Q ss_pred             ecccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccc------------
Q 048462           81 WFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPL------------  148 (325)
Q Consensus        81 l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~------------  148 (325)
                      +++|.+       ....+..+..+++|+.|++.+|....+...  ......+|+.|+++++....++.            
T Consensus       111 Ls~n~i-------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  181 (477)
T 2id5_A          111 ISENKI-------VILLDYMFQDLYNLKSLEVGDNDLVYISHR--AFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVL  181 (477)
T ss_dssp             CTTSCC-------CEECTTTTTTCTTCCEEEECCTTCCEECTT--SSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEE
T ss_pred             CCCCcc-------ccCChhHccccccCCEEECCCCccceeChh--hccCCCCCCEEECCCCcCcccChhHhcccCCCcEE
Confidence            655554       233333444555555555555443332110  00111234444444333333332            


Q ss_pred             --------------cccCCCCCeEEEcCCCCceeccccCCCCCccc--cccccccEEEecCCCCCCccc--cccCCCCcc
Q 048462          149 --------------DLRMDHLETLEIDRCSLESKNDYFGDQGRTRT--YCFRNLRHLSVKTCPCMTDLK--WIRYAPNLQ  210 (325)
Q Consensus       149 --------------l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~l~~l~--~~~~~~~L~  210 (325)
                                    +..+++|+.|++++|....         .++.  ....+|++|+++++ .++.++  .+..+++|+
T Consensus       182 ~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~---------~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~  251 (477)
T 2id5_A          182 RLRHLNINAIRDYSFKRLYRLKVLEISHWPYLD---------TMTPNCLYGLNLTSLSITHC-NLTAVPYLAVRHLVYLR  251 (477)
T ss_dssp             EEESCCCCEECTTCSCSCTTCCEEEEECCTTCC---------EECTTTTTTCCCSEEEEESS-CCCSCCHHHHTTCTTCC
T ss_pred             eCCCCcCcEeChhhcccCcccceeeCCCCcccc---------ccCcccccCccccEEECcCC-cccccCHHHhcCccccC
Confidence                          4445555555555544321         1111  12337777788777 677665  456788888


Q ss_pred             EEEEeccCCchhhcccCCCCCCCccccccccCCcccEEeccCCCCccee-ccCcccCCCccEEeeeCCCCCCCCCCCC
Q 048462          211 FLYVSYCPRLSEIIGTYESPGTSEIEESQDFFSNLMVIDLRHLPSLTSI-CCGVVPFPSLQTISVNGCPSLRKLPLNS  287 (325)
Q Consensus       211 ~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~l~~c~~l~~ip~~~  287 (325)
                      .|++++|.. +.+..           ..+..+++|+.|++.++ .+..+ +.....+++|+.|++++| .++.+|...
T Consensus       252 ~L~Ls~n~l-~~~~~-----------~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~  315 (477)
T 2id5_A          252 FLNLSYNPI-STIEG-----------SMLHELLRLQEIQLVGG-QLAVVEPYAFRGLNYLRVLNVSGN-QLTTLEESV  315 (477)
T ss_dssp             EEECCSSCC-CEECT-----------TSCTTCTTCCEEECCSS-CCSEECTTTBTTCTTCCEEECCSS-CCSCCCGGG
T ss_pred             eeECCCCcC-CccCh-----------hhccccccCCEEECCCC-ccceECHHHhcCcccCCEEECCCC-cCceeCHhH
Confidence            888888863 33322           35678899999999987 55555 444556899999999988 888887643

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.91  E-value=1.8e-23  Score=187.90  Aligned_cols=45  Identities=22%  Similarity=0.253  Sum_probs=27.3

Q ss_pred             ccccCCcccEEeccCCCCcceeccCcccCCCccEEeeeCCCCCCCCC
Q 048462          238 SQDFFSNLMVIDLRHLPSLTSICCGVVPFPSLQTISVNGCPSLRKLP  284 (325)
Q Consensus       238 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~ip  284 (325)
                      ....+++|+.|++++| .+..++.....+++|+.|++++| .++.+|
T Consensus       290 ~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~N-~i~~~~  334 (390)
T 3o6n_A          290 YGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHN-SIVTLK  334 (390)
T ss_dssp             SSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSS-CCCCCC
T ss_pred             ccCCCCCCCEEECCCC-cceecCccccccCcCCEEECCCC-ccceeC
Confidence            3345666666666665 45555555555667777777666 455554

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.90  E-value=6.1e-24  Score=185.30  Aligned_cols=251  Identities=16%  Similarity=0.195  Sum_probs=196.7

Q ss_pred             CCCcEEecCCCCCCC---cCchhhhCcccCceecCCC-Ccc-cccChhhhccccCceeeccCCCCCeeechhhhhCCCcc
Q 048462            2 HALAVLDLSYNLDLV---KLPEAIGKLINLCYLNLSN-TRI-GQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSL   76 (325)
Q Consensus         2 ~~L~~L~l~~~~~~~---~lp~~~~~l~~L~~L~l~~-~~l-~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L   76 (325)
                      .+++.|+++++ .++   .+|..++.+++|++|++++ +.+ +.+|..+.++++|++|++++|.+.+.+|.. +.++++|
T Consensus        50 ~~l~~L~L~~~-~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~-~~~l~~L  127 (313)
T 1ogq_A           50 YRVNNLDLSGL-NLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDF-LSQIKTL  127 (313)
T ss_dssp             CCEEEEEEECC-CCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGG-GGGCTTC
T ss_pred             ceEEEEECCCC-CccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHH-HhCCCCC
Confidence            46899999999 666   5899999999999999995 777 488999999999999999998888788887 9999999


Q ss_pred             cEEEecccceeeeeeccCccchhhhccCCCcceEEEEecCccc-ccccccCccccCCceEEEEceeeee-cccc-cccCC
Q 048462           77 QVFSWFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDA-VNRVKSSPKLQSCIKRLAVVLMASF-LLPL-DLRMD  153 (325)
Q Consensus        77 ~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~-~l~~-l~~l~  153 (325)
                      ++|++++|.+       ....+..+..+++|++|++++|...+ ++..  ...+...|+.|+++++... .+|. +..++
T Consensus       128 ~~L~Ls~N~l-------~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~--l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~  198 (313)
T 1ogq_A          128 VTLDFSYNAL-------SGTLPPSISSLPNLVGITFDGNRISGAIPDS--YGSFSKLFTSMTISRNRLTGKIPPTFANLN  198 (313)
T ss_dssp             CEEECCSSEE-------ESCCCGGGGGCTTCCEEECCSSCCEEECCGG--GGCCCTTCCEEECCSSEEEEECCGGGGGCC
T ss_pred             CEEeCCCCcc-------CCcCChHHhcCCCCCeEECcCCcccCcCCHH--HhhhhhcCcEEECcCCeeeccCChHHhCCc
Confidence            9999999998       55678889999999999999998763 2221  2223336899999966554 4454 77776


Q ss_pred             CCCeEEEcCCCCceeccccCCCCCccccccccccEEEecCCCCCC-ccccccCCCCccEEEEeccCCchhhcccCCCCCC
Q 048462          154 HLETLEIDRCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMT-DLKWIRYAPNLQFLYVSYCPRLSEIIGTYESPGT  232 (325)
Q Consensus       154 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~  232 (325)
                       |+.|++++|......     +..+  ..+++|++|+++++ .++ .++.+..+++|++|++++|.....+         
T Consensus       199 -L~~L~Ls~N~l~~~~-----~~~~--~~l~~L~~L~L~~N-~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~---------  260 (313)
T 1ogq_A          199 -LAFVDLSRNMLEGDA-----SVLF--GSDKNTQKIHLAKN-SLAFDLGKVGLSKNLNGLDLRNNRIYGTL---------  260 (313)
T ss_dssp             -CSEEECCSSEEEECC-----GGGC--CTTSCCSEEECCSS-EECCBGGGCCCCTTCCEEECCSSCCEECC---------
T ss_pred             -ccEEECcCCcccCcC-----CHHH--hcCCCCCEEECCCC-ceeeecCcccccCCCCEEECcCCcccCcC---------
Confidence             999999998764211     1111  46889999999999 565 3566777899999999999753333         


Q ss_pred             CccccccccCCcccEEeccCCCCcceeccCcccCCCccEEeeeCCCCCCCCCC
Q 048462          233 SEIEESQDFFSNLMVIDLRHLPSLTSICCGVVPFPSLQTISVNGCPSLRKLPL  285 (325)
Q Consensus       233 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~ip~  285 (325)
                         +..+..+++|++|++++|.-...+|.. ..+++|+.+++.+++.+...|.
T Consensus       261 ---p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~p~  309 (313)
T 1ogq_A          261 ---PQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSPL  309 (313)
T ss_dssp             ---CGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEESTTS
T ss_pred             ---ChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccCCCC
Confidence               347788999999999998433355554 6789999999999877765553

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.90  E-value=5.2e-23  Score=194.81  Aligned_cols=250  Identities=14%  Similarity=0.142  Sum_probs=111.4

Q ss_pred             CCCcEEecCCCCCCCcCc-hhhhCcccCceecCCCCcccccChh-hhccccCceeeccCCCCCeeechhhhhCCCcccEE
Q 048462            2 HALAVLDLSYNLDLVKLP-EAIGKLINLCYLNLSNTRIGQLPTG-ITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVF   79 (325)
Q Consensus         2 ~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~l~~lp~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L   79 (325)
                      ++|++|++++| .++.++ ..++.+++|++|++++|.++.+|.. ++++++|++|++++|.+. .+|...++++++|++|
T Consensus        75 ~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L  152 (597)
T 3oja_B           75 RQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTL  152 (597)
T ss_dssp             CCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEE
T ss_pred             CCCcEEECCCC-CCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCC-CCCHHHhccCCCCCEE
Confidence            45555555555 444443 3455555555555555555444332 355555555555554333 3333323555555555


Q ss_pred             EecccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccccccCCCCCeEE
Q 048462           80 SWFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPLDLRMDHLETLE  159 (325)
Q Consensus        80 ~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~l~~L~~L~  159 (325)
                      ++++|.+       ....+..+..+++|+.|++++|....+. .    .....|+.|+++++..   ..+...++|+.|+
T Consensus       153 ~Ls~N~l-------~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~----~~l~~L~~L~l~~n~l---~~l~~~~~L~~L~  217 (597)
T 3oja_B          153 SMSNNNL-------ERIEDDTFQATTSLQNLQLSSNRLTHVD-L----SLIPSLFHANVSYNLL---STLAIPIAVEELD  217 (597)
T ss_dssp             ECCSSCC-------CBCCTTTTTTCTTCCEEECTTSCCSBCC-G----GGCTTCSEEECCSSCC---SEEECCTTCSEEE
T ss_pred             EeeCCcC-------CCCChhhhhcCCcCcEEECcCCCCCCcC-h----hhhhhhhhhhcccCcc---ccccCCchhheee
Confidence            5555554       3333344555555555555555443321 0    0111233333332111   1111223334444


Q ss_pred             EcCCCCceeccccC-----------C-CCCccccccccccEEEecCCCCCCcc--ccccCCCCccEEEEeccCCchhhcc
Q 048462          160 IDRCSLESKNDYFG-----------D-QGRTRTYCFRNLRHLSVKTCPCMTDL--KWIRYAPNLQFLYVSYCPRLSEIIG  225 (325)
Q Consensus       160 l~~~~~~~~~~~~~-----------~-~~~~~~~~~~~L~~L~l~~~~~l~~l--~~~~~~~~L~~L~l~~~~~l~~~~~  225 (325)
                      +++|..........           . .+......+++|++|+++++ .++.+  ..+..+++|+.|++++|.. ..   
T Consensus       218 ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~---  292 (597)
T 3oja_B          218 ASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYN-ELEKIMYHPFVKMQRLERLYISNNRL-VA---  292 (597)
T ss_dssp             CCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSS-CCCEEESGGGTTCSSCCEEECTTSCC-CE---
T ss_pred             ccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCC-ccCCCCHHHhcCccCCCEEECCCCCC-CC---
Confidence            44333221100000           0 00000123444555555444 33332  1233445555555554431 11   


Q ss_pred             cCCCCCCCccccccccCCcccEEeccCCCCcceeccCcccCCCccEEeeeCCCCCCCCC
Q 048462          226 TYESPGTSEIEESQDFFSNLMVIDLRHLPSLTSICCGVVPFPSLQTISVNGCPSLRKLP  284 (325)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~ip  284 (325)
                               ++.....+++|+.|++++| .+..++.....+++|+.|++++| .++.+|
T Consensus       293 ---------l~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~l~~L~~L~L~~N-~l~~~~  340 (597)
T 3oja_B          293 ---------LNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHN-SIVTLK  340 (597)
T ss_dssp             ---------EECSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSS-CCCCCC
T ss_pred             ---------CCcccccCCCCcEEECCCC-CCCccCcccccCCCCCEEECCCC-CCCCcC
Confidence                     1224455667777777765 45555555555677777777766 455554

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.90  E-value=1.9e-22  Score=184.72  Aligned_cols=271  Identities=17%  Similarity=0.216  Sum_probs=170.2

Q ss_pred             CCCcEEecCCCCCCCcC-chhhhCcccCceecCCCCccc-cc-ChhhhccccCceeeccCCCCCeeechhhhhCCCcccE
Q 048462            2 HALAVLDLSYNLDLVKL-PEAIGKLINLCYLNLSNTRIG-QL-PTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQV   78 (325)
Q Consensus         2 ~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~l~~~~l~-~l-p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~   78 (325)
                      ++|++|++++| .++.+ |..++++++|++|++++|.+. .+ +..+.++++|++|++++|.+....|.. +.++++|++
T Consensus        30 ~~l~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~  107 (455)
T 3v47_A           30 AHVNYVDLSLN-SIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGA-FNGLANLEV  107 (455)
T ss_dssp             TTCCEEECCSS-CCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTT-TTTCTTCCE
T ss_pred             CccCEEEecCC-ccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhh-ccCcccCCE
Confidence            56889999998 77766 677888899999999888774 55 445788888999999887776666666 888888888


Q ss_pred             EEecccceeeeeeccCccchhh--hccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccc--cc----
Q 048462           79 FSWFSTELVELHYVDSTSVLAE--LESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPL--DL----  150 (325)
Q Consensus        79 L~l~~~~~~~~~~~~~~~~~~~--l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~--l~----  150 (325)
                      |++++|.+       ....+..  +..+++|+.|++++|........... .....|+.|+++++.....+.  +.    
T Consensus       108 L~L~~n~l-------~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~l~~l~~  179 (455)
T 3v47_A          108 LTLTQCNL-------DGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFF-LNMRRFHVLDLTFNKVKSICEEDLLNFQG  179 (455)
T ss_dssp             EECTTSCC-------BTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGG-GGCTTCCEEECTTCCBSCCCTTTSGGGTT
T ss_pred             EeCCCCCC-------CccccCcccccCcccCCEEECCCCccCccCccccc-CCCCcccEEeCCCCcccccChhhhhcccc
Confidence            88888877       3333333  66777788887777766544221101 112346666666433221111  11    


Q ss_pred             ------------------------------cCCCCCeEEEcCCCCceecc------------------------------
Q 048462          151 ------------------------------RMDHLETLEIDRCSLESKND------------------------------  170 (325)
Q Consensus       151 ------------------------------~l~~L~~L~l~~~~~~~~~~------------------------------  170 (325)
                                                    .+++|++|++++|.......                              
T Consensus       180 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  259 (455)
T 3v47_A          180 KHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHT  259 (455)
T ss_dssp             CEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCC
T ss_pred             ccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchh
Confidence                                          22456666666664321000                              


Q ss_pred             -----------------------ccCC-CCCccc--cccccccEEEecCCCCCCccc--cccCCCCccEEEEeccCCchh
Q 048462          171 -----------------------YFGD-QGRTRT--YCFRNLRHLSVKTCPCMTDLK--WIRYAPNLQFLYVSYCPRLSE  222 (325)
Q Consensus       171 -----------------------~~~~-~~~~~~--~~~~~L~~L~l~~~~~l~~l~--~~~~~~~L~~L~l~~~~~l~~  222 (325)
                                             .... .+..+.  ..+++|++|+++++ .++.+.  .+..+++|++|++++|.. +.
T Consensus       260 ~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~  337 (455)
T 3v47_A          260 NFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQN-EINKIDDNAFWGLTHLLKLNLSQNFL-GS  337 (455)
T ss_dssp             SSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCC-CE
T ss_pred             hhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCC-cccccChhHhcCcccCCEEECCCCcc-CC
Confidence                                   0000 000111  34566777777766 555542  455667777777777743 22


Q ss_pred             hcccCCCCCCCccccccccCCcccEEeccCCCCccee-ccCcccCCCccEEeeeCCCCCCCCCCCC-CCcccceeEEe
Q 048462          223 IIGTYESPGTSEIEESQDFFSNLMVIDLRHLPSLTSI-CCGVVPFPSLQTISVNGCPSLRKLPLNS-GSAKNSLNAIR  298 (325)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~l~~c~~l~~ip~~~-~~~~~~l~~~~  298 (325)
                      +.           +..++.+++|++|++++| .+..+ +.....+++|++|++++| +++.+|... ..+ ..+..+.
T Consensus       338 ~~-----------~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l-~~L~~L~  401 (455)
T 3v47_A          338 ID-----------SRMFENLDKLEVLDLSYN-HIRALGDQSFLGLPNLKELALDTN-QLKSVPDGIFDRL-TSLQKIW  401 (455)
T ss_dssp             EC-----------GGGGTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTC-TTCCEEE
T ss_pred             cC-----------hhHhcCcccCCEEECCCC-cccccChhhccccccccEEECCCC-ccccCCHhHhccC-CcccEEE
Confidence            21           246678899999999998 56665 555667899999999987 788887654 333 4444443

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.90  E-value=1.5e-22  Score=179.01  Aligned_cols=239  Identities=16%  Similarity=0.203  Sum_probs=175.8

Q ss_pred             CCCCcEEecCCCCCCCcCchhhhCcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEE
Q 048462            1 MHALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFS   80 (325)
Q Consensus         1 ~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~   80 (325)
                      +++|++|++++| .++.++ .+..+++|++|++++|.+..++. +.++++|++|++++|......+.  +..+++|++|+
T Consensus        87 l~~L~~L~L~~n-~i~~~~-~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~  161 (347)
T 4fmz_A           87 LVKLTNLYIGTN-KITDIS-ALQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLT  161 (347)
T ss_dssp             CTTCCEEECCSS-CCCCCG-GGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEE
T ss_pred             CCcCCEEEccCC-cccCch-HHcCCCcCCEEECcCCcccCchh-hccCCceeEEECCCCCCcccccc--hhhCCCCcEEE
Confidence            578999999999 788875 58889999999999998887776 78889999999988766666555  77888888888


Q ss_pred             ecccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccC------------------ccccCCceEEEEceee
Q 048462           81 WFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSS------------------PKLQSCIKRLAVVLMA  142 (325)
Q Consensus        81 l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~------------------~~~~~~L~~L~l~~~~  142 (325)
                      +.+|.+       .. .. .+..+++|+.|++++|....+..+...                  ......|++|+++++.
T Consensus       162 l~~~~~-------~~-~~-~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~  232 (347)
T 4fmz_A          162 VTESKV-------KD-VT-PIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNK  232 (347)
T ss_dssp             CCSSCC-------CC-CG-GGGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSC
T ss_pred             ecCCCc-------CC-ch-hhccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCc
Confidence            888776       11 11 155566666666666654443321111                  1122456777777666


Q ss_pred             eecccccccCCCCCeEEEcCCCCceeccccCCCCCccccccccccEEEecCCCCCCccccccCCCCccEEEEeccCCchh
Q 048462          143 SFLLPLDLRMDHLETLEIDRCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDLKWIRYAPNLQFLYVSYCPRLSE  222 (325)
Q Consensus       143 ~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~  222 (325)
                      ...++.+..+++|++|++++|...+.         -....+++|++|++++| .+++++.+..+++|++|++++|.....
T Consensus       233 l~~~~~~~~l~~L~~L~l~~n~l~~~---------~~~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~L~~n~l~~~  302 (347)
T 4fmz_A          233 ITDLSPLANLSQLTWLEIGTNQISDI---------NAVKDLTKLKMLNVGSN-QISDISVLNNLSQLNSLFLNNNQLGNE  302 (347)
T ss_dssp             CCCCGGGTTCTTCCEEECCSSCCCCC---------GGGTTCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSCCCGG
T ss_pred             cCCCcchhcCCCCCEEECCCCccCCC---------hhHhcCCCcCEEEccCC-ccCCChhhcCCCCCCEEECcCCcCCCc
Confidence            65566667777777777777765321         11156889999999999 899888888999999999999974332


Q ss_pred             hcccCCCCCCCccccccccCCcccEEeccCCCCcceeccCcccCCCccEEeeeCC
Q 048462          223 IIGTYESPGTSEIEESQDFFSNLMVIDLRHLPSLTSICCGVVPFPSLQTISVNGC  277 (325)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c  277 (325)
                      ..            ..+..+++|+.|++++|+ +..++. ...+++|++|++++|
T Consensus       303 ~~------------~~l~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~N  343 (347)
T 4fmz_A          303 DM------------EVIGGLTNLTTLFLSQNH-ITDIRP-LASLSKMDSADFANQ  343 (347)
T ss_dssp             GH------------HHHHTCTTCSEEECCSSS-CCCCGG-GGGCTTCSEESSSCC
T ss_pred             Ch------------hHhhccccCCEEEccCCc-cccccC-hhhhhccceeehhhh
Confidence            22            367889999999999984 666655 567999999999998

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.90  E-value=5.7e-22  Score=182.25  Aligned_cols=248  Identities=17%  Similarity=0.201  Sum_probs=122.3

Q ss_pred             CCCcEEecCCCCCCCcCchhhhCcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEe
Q 048462            2 HALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSW   81 (325)
Q Consensus         2 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l   81 (325)
                      ++|++|++++| .++.+|. +..+++|++|++++|.+..++. +.++++|++|++++|... .++.  +..+++|++|++
T Consensus        68 ~~L~~L~Ls~n-~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~-~~~~--~~~l~~L~~L~l  141 (466)
T 1o6v_A           68 NNLTQINFSNN-QLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQIT-DIDP--LKNLTNLNRLEL  141 (466)
T ss_dssp             TTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC-CCGG--GTTCTTCSEEEE
T ss_pred             cCCCEEECCCC-ccCCchh-hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCCCCC-CChH--HcCCCCCCEEEC
Confidence            44555555555 4444443 5555555555555555544443 455555555555553322 2232  445555555555


Q ss_pred             cccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccccccCCCCCeEEEc
Q 048462           82 FSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPLDLRMDHLETLEID  161 (325)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~l~~L~~L~l~  161 (325)
                      ++|.+       ..  ...+..+++|+.|++.+ .......+    .....|+.|+++++....++.+..+++|++|+++
T Consensus       142 ~~n~l-------~~--~~~~~~l~~L~~L~l~~-~~~~~~~~----~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~  207 (466)
T 1o6v_A          142 SSNTI-------SD--ISALSGLTSLQQLSFGN-QVTDLKPL----ANLTTLERLDISSNKVSDISVLAKLTNLESLIAT  207 (466)
T ss_dssp             EEEEE-------CC--CGGGTTCTTCSEEEEEE-SCCCCGGG----TTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECC
T ss_pred             CCCcc-------CC--ChhhccCCcccEeecCC-cccCchhh----ccCCCCCEEECcCCcCCCChhhccCCCCCEEEec
Confidence            55544       11  11244444444444432 11111111    1123466666665555555556666677777776


Q ss_pred             CCCCceeccccCCCCCccccccccccEEEecCCCCCCccccccCCCCccEEEEeccCCchhhcccCCCC----------C
Q 048462          162 RCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDLKWIRYAPNLQFLYVSYCPRLSEIIGTYESP----------G  231 (325)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~----------~  231 (325)
                      +|...         +..+...+++|++|+++++ .+++++.+..+++|++|++++|... .........          .
T Consensus       208 ~n~l~---------~~~~~~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~l~~L~~L~l~~n~  276 (466)
T 1o6v_A          208 NNQIS---------DITPLGILTNLDELSLNGN-QLKDIGTLASLTNLTDLDLANNQIS-NLAPLSGLTKLTELKLGANQ  276 (466)
T ss_dssp             SSCCC---------CCGGGGGCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSCCC-CCGGGTTCTTCSEEECCSSC
T ss_pred             CCccc---------ccccccccCCCCEEECCCC-CcccchhhhcCCCCCEEECCCCccc-cchhhhcCCCCCEEECCCCc
Confidence            66542         1112234556666666666 5555555555666666666655421 111000000          0


Q ss_pred             CCccccccccCCcccEEeccCCCCcceeccCcccCCCccEEeeeCCCCCCCCC
Q 048462          232 TSEIEESQDFFSNLMVIDLRHLPSLTSICCGVVPFPSLQTISVNGCPSLRKLP  284 (325)
Q Consensus       232 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~ip  284 (325)
                      ...++ .+..+++|+.|++.+| .+..++. ...+++|+.|++++| .++.++
T Consensus       277 l~~~~-~~~~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~L~~n-~l~~~~  325 (466)
T 1o6v_A          277 ISNIS-PLAGLTALTNLELNEN-QLEDISP-ISNLKNLTYLTLYFN-NISDIS  325 (466)
T ss_dssp             CCCCG-GGTTCTTCSEEECCSS-CCSCCGG-GGGCTTCSEEECCSS-CCSCCG
T ss_pred             cCccc-cccCCCccCeEEcCCC-cccCchh-hcCCCCCCEEECcCC-cCCCch
Confidence            01111 2456677777777776 4544444 445777888888777 555554

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.90  E-value=5.9e-23  Score=195.64  Aligned_cols=275  Identities=15%  Similarity=0.167  Sum_probs=161.1

Q ss_pred             CCCCcEEecCCCCCCCcCchhhhCcccCceecCCCCc-cc--ccChhhhcc------ccCceeeccCCCCCeeech--hh
Q 048462            1 MHALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTR-IG--QLPTGITYL------KNLKILRLDGMRYLAFVPC--QV   69 (325)
Q Consensus         1 ~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~-l~--~lp~~l~~l------~~L~~L~l~~~~~~~~~~~--~~   69 (325)
                      +++|++|++++|...+.+|..++++++|++|++++|. ++  .+|..+.++      ++|++|++++|.+. .+|.  . 
T Consensus       248 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~-  325 (636)
T 4eco_A          248 LKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETS-  325 (636)
T ss_dssp             CTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHH-
T ss_pred             cCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhh-
Confidence            3566677777764444566666666777777776665 54  366666554      66666666665544 5555  4 


Q ss_pred             hhCCCcccEEEeccccee-ee------------ee--ccCccchhhhccCCC-cceEEEEecCcccccccccCcc-----
Q 048462           70 ISSLSSLQVFSWFSTELV-EL------------HY--VDSTSVLAELESLEN-IHDISVTLCNVDAVNRVKSSPK-----  128 (325)
Q Consensus        70 ~~~l~~L~~L~l~~~~~~-~~------------~~--~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~~~-----  128 (325)
                      ++++++|++|++++|.+. ..            +.  ..-..++..+..+++ |+.|++++|....++.......     
T Consensus       326 l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~  405 (636)
T 4eco_A          326 LQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMS  405 (636)
T ss_dssp             HTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEE
T ss_pred             hccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccC
Confidence            666666666666666542 00            00  000134445666666 7777777766554433211110     


Q ss_pred             -------------------------ccCCceEEEEceeeeecccc--cccCCCCCeEEEcCCCCceeccccCCCCCccc-
Q 048462          129 -------------------------LQSCIKRLAVVLMASFLLPL--DLRMDHLETLEIDRCSLESKNDYFGDQGRTRT-  180 (325)
Q Consensus       129 -------------------------~~~~L~~L~l~~~~~~~l~~--l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~-  180 (325)
                                               ...+|+.|+++++....+|.  +..+++|+.|++++|...++..     ..+.. 
T Consensus       406 ~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~-----~~~~~~  480 (636)
T 4eco_A          406 AIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPK-----NSLKDE  480 (636)
T ss_dssp             EEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCS-----SSSEET
T ss_pred             EEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCH-----HHhccc
Confidence                                     11235555555444444444  3346666666666665432110     11110 


Q ss_pred             ----cccccccEEEecCCCCCCcccc-cc--CCCCccEEEEeccCCchhhcccCCCCCCCccccccccCCcccEEeccC-
Q 048462          181 ----YCFRNLRHLSVKTCPCMTDLKW-IR--YAPNLQFLYVSYCPRLSEIIGTYESPGTSEIEESQDFFSNLMVIDLRH-  252 (325)
Q Consensus       181 ----~~~~~L~~L~l~~~~~l~~l~~-~~--~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~-  252 (325)
                          ..+++|++|+++++ .++.++. +.  .+++|++|++++|... .            +|..+..+++|+.|++++ 
T Consensus       481 ~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~~~l~~L~~L~Ls~N~l~-~------------ip~~~~~l~~L~~L~Ls~N  546 (636)
T 4eco_A          481 NENFKNTYLLTSIDLRFN-KLTKLSDDFRATTLPYLVGIDLSYNSFS-K------------FPTQPLNSSTLKGFGIRNQ  546 (636)
T ss_dssp             TEECTTGGGCCEEECCSS-CCCBCCGGGSTTTCTTCCEEECCSSCCS-S------------CCCGGGGCSSCCEEECCSC
T ss_pred             cccccccCCccEEECcCC-cCCccChhhhhccCCCcCEEECCCCCCC-C------------cChhhhcCCCCCEEECCCC
Confidence                12237888888888 6776653 33  6788888888887532 2            345777899999999964 


Q ss_pred             -----CCCcceeccCcccCCCccEEeeeCCCCCCCCCCCCCCcccceeEEech
Q 048462          253 -----LPSLTSICCGVVPFPSLQTISVNGCPSLRKLPLNSGSAKNSLNAIRGS  300 (325)
Q Consensus       253 -----~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~ip~~~~~~~~~l~~~~~~  300 (325)
                           +.-...++.....+++|++|++++| .++.+|..+.   ..+..++..
T Consensus       547 ~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~ip~~~~---~~L~~L~Ls  595 (636)
T 4eco_A          547 RDAQGNRTLREWPEGITLCPSLTQLQIGSN-DIRKVNEKIT---PNISVLDIK  595 (636)
T ss_dssp             BCTTCCBCCCCCCTTGGGCSSCCEEECCSS-CCCBCCSCCC---TTCCEEECC
T ss_pred             cccccCcccccChHHHhcCCCCCEEECCCC-cCCccCHhHh---CcCCEEECc
Confidence                 3334566777777899999999988 6688987755   344444433

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.89  E-value=2.6e-22  Score=180.37  Aligned_cols=244  Identities=15%  Similarity=0.153  Sum_probs=166.5

Q ss_pred             CCCCcEEecCCCCCCCcCc-hhhhCcccCceecCCCCcccccCh-hhhccccCceeeccCCCCCeeechhhhhCCCcccE
Q 048462            1 MHALAVLDLSYNLDLVKLP-EAIGKLINLCYLNLSNTRIGQLPT-GITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQV   78 (325)
Q Consensus         1 ~~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~   78 (325)
                      +++|++|++++| .++.++ ..+..+++|++|++++|.++.++. .+.++++|++|++++|.+. .+|...+..+++|++
T Consensus        68 l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~  145 (390)
T 3o6n_A           68 FRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTT  145 (390)
T ss_dssp             CCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred             cccCcEEECCCC-cccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcE
Confidence            467888888888 677664 467888888888888888766644 4678888888888886544 555543577888888


Q ss_pred             EEecccceeeeeeccCccchhhhccCCCcceEEEEecCcccccc--cccC------------------------------
Q 048462           79 FSWFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNR--VKSS------------------------------  126 (325)
Q Consensus        79 L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~--~~~~------------------------------  126 (325)
                      |++++|.+       ....+..+..+++|+.|++++|....+..  +...                              
T Consensus       146 L~L~~n~l-------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~  218 (390)
T 3o6n_A          146 LSMSNNNL-------ERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSIN  218 (390)
T ss_dssp             EECCSSCC-------CBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCC
T ss_pred             EECCCCcc-------CccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeee
Confidence            88888876       34445556777777777777776543210  0000                              


Q ss_pred             ---ccccCCceEEEEceeeeecccccccCCCCCeEEEcCCCCceeccccCCCCCccccccccccEEEecCCCCCCcccc-
Q 048462          127 ---PKLQSCIKRLAVVLMASFLLPLDLRMDHLETLEIDRCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDLKW-  202 (325)
Q Consensus       127 ---~~~~~~L~~L~l~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-  202 (325)
                         ......|+.|+++++.....+.+..+++|++|++++|......     +..+  ..+++|++|+++++ .++.++. 
T Consensus       219 ~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~-----~~~~--~~l~~L~~L~L~~n-~l~~~~~~  290 (390)
T 3o6n_A          219 VVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIM-----YHPF--VKMQRLERLYISNN-RLVALNLY  290 (390)
T ss_dssp             EEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEE-----SGGG--TTCSSCCEEECCSS-CCCEEECS
T ss_pred             eccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcC-----hhHc--cccccCCEEECCCC-cCcccCcc
Confidence               0011235556666554445555777788888888888754221     1111  45788999999888 7777654 


Q ss_pred             ccCCCCccEEEEeccCCchhhcccCCCCCCCccccccccCCcccEEeccCCCCcceeccCcccCCCccEEeeeCC
Q 048462          203 IRYAPNLQFLYVSYCPRLSEIIGTYESPGTSEIEESQDFFSNLMVIDLRHLPSLTSICCGVVPFPSLQTISVNGC  277 (325)
Q Consensus       203 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c  277 (325)
                      ...+++|++|++++|. +..+            +..+..+++|+.|++.+| .+..++  ...+++|+.|+++++
T Consensus       291 ~~~l~~L~~L~L~~n~-l~~~------------~~~~~~l~~L~~L~L~~N-~i~~~~--~~~~~~L~~L~l~~N  349 (390)
T 3o6n_A          291 GQPIPTLKVLDLSHNH-LLHV------------ERNQPQFDRLENLYLDHN-SIVTLK--LSTHHTLKNLTLSHN  349 (390)
T ss_dssp             SSCCTTCCEEECCSSC-CCCC------------GGGHHHHTTCSEEECCSS-CCCCCC--CCTTCCCSEEECCSS
T ss_pred             cCCCCCCCEEECCCCc-ceec------------CccccccCcCCEEECCCC-ccceeC--chhhccCCEEEcCCC
Confidence            3468899999999885 3333            236678999999999998 566665  456899999999987

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.89  E-value=5.9e-23  Score=195.67  Aligned_cols=276  Identities=14%  Similarity=0.127  Sum_probs=196.8

Q ss_pred             CCCCcEEecCCCCCCCc------------------Cchhhh--CcccCceecCCCCcc-cccChhhhccccCceeeccCC
Q 048462            1 MHALAVLDLSYNLDLVK------------------LPEAIG--KLINLCYLNLSNTRI-GQLPTGITYLKNLKILRLDGM   59 (325)
Q Consensus         1 ~~~L~~L~l~~~~~~~~------------------lp~~~~--~l~~L~~L~l~~~~l-~~lp~~l~~l~~L~~L~l~~~   59 (325)
                      +++|++|++++| .++.                  +|+.++  ++++|++|++++|.+ +.+|..+.++++|++|++++|
T Consensus       205 l~~L~~L~Ls~n-~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n  283 (636)
T 4eco_A          205 LTKLRQFYMGNS-PFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACN  283 (636)
T ss_dssp             CTTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTC
T ss_pred             ccCCCEEECcCC-ccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCC
Confidence            578999999999 6887                  999999  999999999999986 689999999999999999998


Q ss_pred             C-CCe-eechhhhhCC------CcccEEEecccceeeeeeccCccchh--hhccCCCcceEEEEecCcc-cccccccCcc
Q 048462           60 R-YLA-FVPCQVISSL------SSLQVFSWFSTELVELHYVDSTSVLA--ELESLENIHDISVTLCNVD-AVNRVKSSPK  128 (325)
Q Consensus        60 ~-~~~-~~~~~~~~~l------~~L~~L~l~~~~~~~~~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~-~~~~~~~~~~  128 (325)
                      . +.+ .+|.. ++.+      ++|++|++++|.+       . .++.  .+..+++|+.|++++|... .++.+    .
T Consensus       284 ~~l~~~~lp~~-~~~L~~~~~l~~L~~L~L~~n~l-------~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~----~  350 (636)
T 4eco_A          284 RGISGEQLKDD-WQALADAPVGEKIQIIYIGYNNL-------K-TFPVETSLQKMKKLGMLECLYNQLEGKLPAF----G  350 (636)
T ss_dssp             TTSCHHHHHHH-HHHHHHSGGGGTCCEEECCSSCC-------S-SCCCHHHHTTCTTCCEEECCSCCCEEECCCC----E
T ss_pred             CCCccccchHH-HHhhhccccCCCCCEEECCCCcC-------C-ccCchhhhccCCCCCEEeCcCCcCccchhhh----C
Confidence            7 666 78877 7776      9999999999998       4 6777  8999999999999999877 44422    2


Q ss_pred             ccCCceEEEEceeeeecccc-cccCCC-CCeEEEcCCCCceeccccCC----------------CCCccc--c-------
Q 048462          129 LQSCIKRLAVVLMASFLLPL-DLRMDH-LETLEIDRCSLESKNDYFGD----------------QGRTRT--Y-------  181 (325)
Q Consensus       129 ~~~~L~~L~l~~~~~~~l~~-l~~l~~-L~~L~l~~~~~~~~~~~~~~----------------~~~~~~--~-------  181 (325)
                      ...+|+.|+++++....+|. +..+++ |+.|++++|...++...+..                .+..|.  .       
T Consensus       351 ~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~  430 (636)
T 4eco_A          351 SEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPF  430 (636)
T ss_dssp             EEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCC
T ss_pred             CCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccc
Confidence            23458888888776667776 888888 99999988875422211100                000000  1       


Q ss_pred             ccccccEEEecCCCCCCcccc--ccCCCCccEEEEeccCCchhhcccCCCCCCCccccccccCCcccEEeccCCCCccee
Q 048462          182 CFRNLRHLSVKTCPCMTDLKW--IRYAPNLQFLYVSYCPRLSEIIGTYESPGTSEIEESQDFFSNLMVIDLRHLPSLTSI  259 (325)
Q Consensus       182 ~~~~L~~L~l~~~~~l~~l~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~  259 (325)
                      .+++|++|+++++ .++.++.  +..+++|++|++++|... .+.....    .........+++|+.|++++| .++.+
T Consensus       431 ~~~~L~~L~Ls~N-~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~----~~~~~~~~~l~~L~~L~Ls~N-~l~~l  503 (636)
T 4eco_A          431 KGINVSSINLSNN-QISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSL----KDENENFKNTYLLTSIDLRFN-KLTKL  503 (636)
T ss_dssp             CCCCEEEEECCSS-CCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSS----EETTEECTTGGGCCEEECCSS-CCCBC
T ss_pred             cCCCCCEEECcCC-ccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHh----ccccccccccCCccEEECcCC-cCCcc
Confidence            3346666666666 5555443  234667777777776532 3322000    000001223448999999987 66677


Q ss_pred             ccCcc--cCCCccEEeeeCCCCCCCCCCCCCCcccceeEEec
Q 048462          260 CCGVV--PFPSLQTISVNGCPSLRKLPLNSGSAKNSLNAIRG  299 (325)
Q Consensus       260 ~~~~~--~~~~L~~L~l~~c~~l~~ip~~~~~~~~~l~~~~~  299 (325)
                      +....  .+++|+.|++++| .++.+|..+..+ ..++.++.
T Consensus       504 p~~~~~~~l~~L~~L~Ls~N-~l~~ip~~~~~l-~~L~~L~L  543 (636)
T 4eco_A          504 SDDFRATTLPYLVGIDLSYN-SFSKFPTQPLNS-STLKGFGI  543 (636)
T ss_dssp             CGGGSTTTCTTCCEEECCSS-CCSSCCCGGGGC-SSCCEEEC
T ss_pred             ChhhhhccCCCcCEEECCCC-CCCCcChhhhcC-CCCCEEEC
Confidence            77665  7899999999887 777788877766 56666554

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.89  E-value=4.5e-22  Score=193.84  Aligned_cols=270  Identities=13%  Similarity=0.128  Sum_probs=167.7

Q ss_pred             CCCCcEEecCCCCCCCc--CchhhhCcc-------cCceecCCCCcccccCh--hhhccccCceeeccCCCCCeeechhh
Q 048462            1 MHALAVLDLSYNLDLVK--LPEAIGKLI-------NLCYLNLSNTRIGQLPT--GITYLKNLKILRLDGMRYLAFVPCQV   69 (325)
Q Consensus         1 ~~~L~~L~l~~~~~~~~--lp~~~~~l~-------~L~~L~l~~~~l~~lp~--~l~~l~~L~~L~l~~~~~~~~~~~~~   69 (325)
                      |++|++|++++|..++.  +|..++.+.       +|++|++++|.+..+|.  .+.++++|++|++++|.+. .+| . 
T Consensus       514 L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~-  590 (876)
T 4ecn_A          514 LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLE-A-  590 (876)
T ss_dssp             CSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC-BCC-C-
T ss_pred             CCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc-cch-h-
Confidence            35666677776621543  566555554       66666666666666666  6666666666666665544 555 3 


Q ss_pred             hhCCCcccEEEecccceeeeeeccCccchhhhccCCC-cceEEEEecCcccccccccCcc--------------------
Q 048462           70 ISSLSSLQVFSWFSTELVELHYVDSTSVLAELESLEN-IHDISVTLCNVDAVNRVKSSPK--------------------  128 (325)
Q Consensus        70 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~~~--------------------  128 (325)
                      +..+++|+.|++++|.+       . .++..+..+++ |+.|++++|....++.......                    
T Consensus       591 ~~~L~~L~~L~Ls~N~l-------~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~  662 (876)
T 4ecn_A          591 FGTNVKLTDLKLDYNQI-------E-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRN  662 (876)
T ss_dssp             CCTTSEESEEECCSSCC-------S-CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSS
T ss_pred             hcCCCcceEEECcCCcc-------c-cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCcccc
Confidence            66666666666666665       2 44555555655 6666666665443332211100                    


Q ss_pred             --------ccCCceEEEEceeeeecccc--cccCCCCCeEEEcCCCCceeccccCCCCCcc-ccccccccEEEecCCCCC
Q 048462          129 --------LQSCIKRLAVVLMASFLLPL--DLRMDHLETLEIDRCSLESKNDYFGDQGRTR-TYCFRNLRHLSVKTCPCM  197 (325)
Q Consensus       129 --------~~~~L~~L~l~~~~~~~l~~--l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~l  197 (325)
                              ...+|+.|+++++....+|.  +..+++|+.|++++|....+..... ....+ ...+++|++|++++| ++
T Consensus       663 l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~-~~~~~~l~nl~~L~~L~Ls~N-~L  740 (876)
T 4ecn_A          663 ISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSL-KPKDGNYKNTYLLTTIDLRFN-KL  740 (876)
T ss_dssp             CSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSS-SCTTSCCTTGGGCCEEECCSS-CC
T ss_pred             chhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHh-ccccccccccCCccEEECCCC-CC
Confidence                    01246777777665556665  3467888888888886542211000 00000 023448999999998 77


Q ss_pred             Ccccc-cc--CCCCccEEEEeccCCchhhcccCCCCCCCccccccccCCcccEEeccC------CCCcceeccCcccCCC
Q 048462          198 TDLKW-IR--YAPNLQFLYVSYCPRLSEIIGTYESPGTSEIEESQDFFSNLMVIDLRH------LPSLTSICCGVVPFPS  268 (325)
Q Consensus       198 ~~l~~-~~--~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~------~~~l~~~~~~~~~~~~  268 (325)
                      +.++. +.  .+++|+.|++++|.. +.            ++..+..+++|+.|++++      |.-...++.....+++
T Consensus       741 ~~lp~~l~~~~l~~L~~L~Ls~N~L-~~------------lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~  807 (876)
T 4ecn_A          741 TSLSDDFRATTLPYLSNMDVSYNCF-SS------------FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPS  807 (876)
T ss_dssp             CCCCGGGSTTTCTTCCEEECCSSCC-SS------------CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSS
T ss_pred             ccchHHhhhccCCCcCEEEeCCCCC-Cc------------cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCC
Confidence            77763 33  688999999998863 22            335778899999999977      3334556767777999


Q ss_pred             ccEEeeeCCCCCCCCCCCCCCcccceeEEech
Q 048462          269 LQTISVNGCPSLRKLPLNSGSAKNSLNAIRGS  300 (325)
Q Consensus       269 L~~L~l~~c~~l~~ip~~~~~~~~~l~~~~~~  300 (325)
                      |+.|++++| .++.+|..+.   ..+..++..
T Consensus       808 L~~L~Ls~N-~L~~Ip~~l~---~~L~~LdLs  835 (876)
T 4ecn_A          808 LIQLQIGSN-DIRKVDEKLT---PQLYILDIA  835 (876)
T ss_dssp             CCEEECCSS-CCCBCCSCCC---SSSCEEECC
T ss_pred             CCEEECCCC-CCCccCHhhc---CCCCEEECC
Confidence            999999998 6688998765   244444433

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.88  E-value=1.5e-21  Score=179.49  Aligned_cols=264  Identities=13%  Similarity=0.177  Sum_probs=143.9

Q ss_pred             CCCCcEEecCCCCCCCcCchhhhCcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeech-------------
Q 048462            1 MHALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPC-------------   67 (325)
Q Consensus         1 ~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~-------------   67 (325)
                      +++|++|++++| .+..++. +..+++|++|++++|.++.++. +.++++|++|++++|.+.. ++.             
T Consensus        89 l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~l~  164 (466)
T 1o6v_A           89 LTKLVDILMNNN-QIADITP-LANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNTISD-ISALSGLTSLQQLSFG  164 (466)
T ss_dssp             CTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEEEEEEEECC-CGGGTTCTTCSEEEEE
T ss_pred             cccCCEEECCCC-ccccChh-hcCCCCCCEEECCCCCCCCChH-HcCCCCCCEEECCCCccCC-ChhhccCCcccEeecC
Confidence            468889999988 7777766 8888999999998888877765 7888888888888864332 332             


Q ss_pred             -------hhhhCCCcccEEEecccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEce
Q 048462           68 -------QVISSLSSLQVFSWFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVL  140 (325)
Q Consensus        68 -------~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~  140 (325)
                             . +.++++|++|++++|.+       ..  ...+..+++|+.|++++|.......+.    ...+|+.|++++
T Consensus       165 ~~~~~~~~-~~~l~~L~~L~l~~n~l-------~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~----~l~~L~~L~l~~  230 (466)
T 1o6v_A          165 NQVTDLKP-LANLTTLERLDISSNKV-------SD--ISVLAKLTNLESLIATNNQISDITPLG----ILTNLDELSLNG  230 (466)
T ss_dssp             ESCCCCGG-GTTCTTCCEEECCSSCC-------CC--CGGGGGCTTCSEEECCSSCCCCCGGGG----GCTTCCEEECCS
T ss_pred             CcccCchh-hccCCCCCEEECcCCcC-------CC--ChhhccCCCCCEEEecCCccccccccc----ccCCCCEEECCC
Confidence                   1 34445555555555544       11  123555566666666666544433211    123466666665


Q ss_pred             eeeecccccccCCCCCeEEEcCCCCceeccccCCCCCccccccccccEEEecCCCCCCccccccCCCCccEEEEeccCCc
Q 048462          141 MASFLLPLDLRMDHLETLEIDRCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDLKWIRYAPNLQFLYVSYCPRL  220 (325)
Q Consensus       141 ~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l  220 (325)
                      +....++.+..+++|+.|++++|.....         .+...+++|++|+++++ .++.++.+..+++|++|++++|.. 
T Consensus       231 n~l~~~~~l~~l~~L~~L~l~~n~l~~~---------~~~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~L~~n~l-  299 (466)
T 1o6v_A          231 NQLKDIGTLASLTNLTDLDLANNQISNL---------APLSGLTKLTELKLGAN-QISNISPLAGLTALTNLELNENQL-  299 (466)
T ss_dssp             SCCCCCGGGGGCTTCSEEECCSSCCCCC---------GGGTTCTTCSEEECCSS-CCCCCGGGTTCTTCSEEECCSSCC-
T ss_pred             CCcccchhhhcCCCCCEEECCCCccccc---------hhhhcCCCCCEEECCCC-ccCccccccCCCccCeEEcCCCcc-
Confidence            5554555566666666666666654211         11133444555555444 344443344444444444444431 


Q ss_pred             hhhcccCCCC----------CCCccccccccCCcccEEeccCCCCcceeccCcccCCCccEEeeeCCCCCCCCCCCCCCc
Q 048462          221 SEIIGTYESP----------GTSEIEESQDFFSNLMVIDLRHLPSLTSICCGVVPFPSLQTISVNGCPSLRKLPLNSGSA  290 (325)
Q Consensus       221 ~~~~~~~~~~----------~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~ip~~~~~~  290 (325)
                      +.+.......          ...+.+ .+..+++|+.|++.+| .+..++ ....+++|+.|++++| .++.+++ +..+
T Consensus       300 ~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~l~~n-~l~~~~~-~~~l  374 (466)
T 1o6v_A          300 EDISPISNLKNLTYLTLYFNNISDIS-PVSSLTKLQRLFFYNN-KVSDVS-SLANLTNINWLSAGHN-QISDLTP-LANL  374 (466)
T ss_dssp             SCCGGGGGCTTCSEEECCSSCCSCCG-GGGGCTTCCEEECCSS-CCCCCG-GGTTCTTCCEEECCSS-CCCBCGG-GTTC
T ss_pred             cCchhhcCCCCCCEEECcCCcCCCch-hhccCccCCEeECCCC-ccCCch-hhccCCCCCEEeCCCC-ccCccch-hhcC
Confidence            1110000000          000011 2456677777777776 444443 2345777788888776 4554443 3333


Q ss_pred             ccceeEEec
Q 048462          291 KNSLNAIRG  299 (325)
Q Consensus       291 ~~~l~~~~~  299 (325)
                       ..+..+..
T Consensus       375 -~~L~~L~l  382 (466)
T 1o6v_A          375 -TRITQLGL  382 (466)
T ss_dssp             -TTCCEEEC
T ss_pred             -CCCCEEec
Confidence             34444443

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.88  E-value=3e-21  Score=179.77  Aligned_cols=112  Identities=20%  Similarity=0.164  Sum_probs=64.2

Q ss_pred             cccccccEEEecCCCCCCccc----cccCCCCccEEEEeccCCchhhcccCCC----C-----CCCcc-ccccccC-Ccc
Q 048462          181 YCFRNLRHLSVKTCPCMTDLK----WIRYAPNLQFLYVSYCPRLSEIIGTYES----P-----GTSEI-EESQDFF-SNL  245 (325)
Q Consensus       181 ~~~~~L~~L~l~~~~~l~~l~----~~~~~~~L~~L~l~~~~~l~~~~~~~~~----~-----~~~~~-~~~~~~~-~~L  245 (325)
                      ..+++|++|+++++ .++.++    .+..+++|++|++++|.....+......    .     ..-.+ ......+ ++|
T Consensus       345 ~~l~~L~~L~L~~N-~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L  423 (520)
T 2z7x_B          345 GHLTELETLILQMN-QLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRI  423 (520)
T ss_dssp             CCCSSCCEEECCSS-CCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTC
T ss_pred             ccCCCCCEEEccCC-ccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhcccC
Confidence            34566666766666 555432    2455677777777766543323221000    0     00000 0011122 578


Q ss_pred             cEEeccCCCCcceeccCcccCCCccEEeeeCCCCCCCCCCC-CCCcccceeE
Q 048462          246 MVIDLRHLPSLTSICCGVVPFPSLQTISVNGCPSLRKLPLN-SGSAKNSLNA  296 (325)
Q Consensus       246 ~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~ip~~-~~~~~~~l~~  296 (325)
                      +.|++++| .++.++.....+++|++|++++| +++.+|.. +..+ ..+..
T Consensus       424 ~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l-~~L~~  472 (520)
T 2z7x_B          424 KVLDLHSN-KIKSIPKQVVKLEALQELNVASN-QLKSVPDGIFDRL-TSLQK  472 (520)
T ss_dssp             CEEECCSS-CCCCCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTC-TTCCE
T ss_pred             CEEECCCC-cccccchhhhcCCCCCEEECCCC-cCCccCHHHhccC-CcccE
Confidence            88888887 66677776668899999999988 88888876 4443 34443

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.88  E-value=2e-22  Score=196.10  Aligned_cols=266  Identities=17%  Similarity=0.162  Sum_probs=127.9

Q ss_pred             CCCcEEecCCCCCCC-cCchhhhC-cccCceecCCCCccc-ccChhhhccccCceeeccCCCCCeeechhhhhCCCcccE
Q 048462            2 HALAVLDLSYNLDLV-KLPEAIGK-LINLCYLNLSNTRIG-QLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQV   78 (325)
Q Consensus         2 ~~L~~L~l~~~~~~~-~lp~~~~~-l~~L~~L~l~~~~l~-~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~   78 (325)
                      ++|++|++++| .++ .+|..+.. +++|++|++++|.+. .+|..+.++++|++|++++|.+.+.+|...+..+++|++
T Consensus       269 ~~L~~L~L~~n-~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~  347 (768)
T 3rgz_A          269 KSLQYLSLAEN-KFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKV  347 (768)
T ss_dssp             TTCCEEECCSS-EEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCE
T ss_pred             CCCCEEECcCC-ccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCE
Confidence            34444455444 233 44444444 256666666666553 555555666666666666655554555433555666666


Q ss_pred             EEecccceeeeeeccCccchhhhccCC-CcceEEEEecCcccccccccCccccCCceEEEEceeeee-cccc-cccCCCC
Q 048462           79 FSWFSTELVELHYVDSTSVLAELESLE-NIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASF-LLPL-DLRMDHL  155 (325)
Q Consensus        79 L~l~~~~~~~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~l~~-l~~l~~L  155 (325)
                      |++++|.+       ....+..+..++ +|+.|++++|...+.............|+.|+++++... .+|. +..+++|
T Consensus       348 L~Ls~n~l-------~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L  420 (768)
T 3rgz_A          348 LDLSFNEF-------SGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSEL  420 (768)
T ss_dssp             EECCSSEE-------EECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTC
T ss_pred             EeCcCCcc-------CccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCC
Confidence            66666655       334444444444 555555555543321000000011234566666644433 3333 5566666


Q ss_pred             CeEEEcCCCCcee-ccccCC--------------CCCccc--cccccccEEEecCCCCCCc-cc-cccCCCCccEEEEec
Q 048462          156 ETLEIDRCSLESK-NDYFGD--------------QGRTRT--YCFRNLRHLSVKTCPCMTD-LK-WIRYAPNLQFLYVSY  216 (325)
Q Consensus       156 ~~L~l~~~~~~~~-~~~~~~--------------~~~~~~--~~~~~L~~L~l~~~~~l~~-l~-~~~~~~~L~~L~l~~  216 (325)
                      +.|++++|..... ...+..              .+.+|.  ..+++|++|++++| .++. ++ .+..+++|++|++++
T Consensus       421 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~~p~~l~~l~~L~~L~L~~  499 (768)
T 3rgz_A          421 VSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFN-DLTGEIPSGLSNCTNLNWISLSN  499 (768)
T ss_dssp             CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSS-CCCSCCCGGGGGCTTCCEEECCS
T ss_pred             CEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCC-cccCcCCHHHhcCCCCCEEEccC
Confidence            6666666643210 000000              111111  23444444444444 3331 21 233445555555555


Q ss_pred             cCCchhhcccCCCCCCCccccccccCCcccEEeccCCCCcceeccCcccCCCccEEeeeCCCCCCCCCCCCC
Q 048462          217 CPRLSEIIGTYESPGTSEIEESQDFFSNLMVIDLRHLPSLTSICCGVVPFPSLQTISVNGCPSLRKLPLNSG  288 (325)
Q Consensus       217 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~ip~~~~  288 (325)
                      |....            .+|.+++.+++|++|++++|.-...++.....+++|+.|++++|+-...+|..+.
T Consensus       500 N~l~~------------~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~  559 (768)
T 3rgz_A          500 NRLTG------------EIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMF  559 (768)
T ss_dssp             SCCCS------------CCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGG
T ss_pred             CccCC------------cCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHh
Confidence            44221            2234556666666666666644445555555666677777766643335665443

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.88  E-value=2.3e-22  Score=195.91  Aligned_cols=276  Identities=17%  Similarity=0.146  Sum_probs=186.3

Q ss_pred             CCCCcEEecCCCCCCCc------------------Cchhhh--CcccCceecCCCCcc-cccChhhhccccCceeeccCC
Q 048462            1 MHALAVLDLSYNLDLVK------------------LPEAIG--KLINLCYLNLSNTRI-GQLPTGITYLKNLKILRLDGM   59 (325)
Q Consensus         1 ~~~L~~L~l~~~~~~~~------------------lp~~~~--~l~~L~~L~l~~~~l-~~lp~~l~~l~~L~~L~l~~~   59 (325)
                      |++|++|+|++| .++.                  +|+.++  ++++|++|++++|.+ +.+|..+.++++|++|++++|
T Consensus       447 L~~L~~L~Ls~N-~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N  525 (876)
T 4ecn_A          447 LTKLQIIYFANS-PFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACN  525 (876)
T ss_dssp             CTTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTC
T ss_pred             CCCCCEEECcCC-cCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCC
Confidence            468889999998 6776                  888877  889999999988875 688888888999999999887


Q ss_pred             C-CCe-eechhhhhCCC-------cccEEEecccceeeeeeccCccchh--hhccCCCcceEEEEecCcccccccccCcc
Q 048462           60 R-YLA-FVPCQVISSLS-------SLQVFSWFSTELVELHYVDSTSVLA--ELESLENIHDISVTLCNVDAVNRVKSSPK  128 (325)
Q Consensus        60 ~-~~~-~~~~~~~~~l~-------~L~~L~l~~~~~~~~~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~~~~~  128 (325)
                      . +.+ .+|.. +..++       +|++|++++|.+       . .++.  .+..+++|+.|++++|....++.+    .
T Consensus       526 ~~lsg~~iP~~-i~~L~~~~~~l~~L~~L~Ls~N~L-------~-~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~----~  592 (876)
T 4ecn_A          526 RGISAAQLKAD-WTRLADDEDTGPKIQIFYMGYNNL-------E-EFPASASLQKMVKLGLLDCVHNKVRHLEAF----G  592 (876)
T ss_dssp             TTSCHHHHHHH-HHHHHHCTTTTTTCCEEECCSSCC-------C-BCCCHHHHTTCTTCCEEECTTSCCCBCCCC----C
T ss_pred             CCcccccchHH-HHhhhhcccccCCccEEEeeCCcC-------C-ccCChhhhhcCCCCCEEECCCCCcccchhh----c
Confidence            6 555 57765 55554       888888888887       3 5666  788888888888888877655422    2


Q ss_pred             ccCCceEEEEceeeeecccc-cccCCC-CCeEEEcCCCCceeccccCC----------------CCCccc-------ccc
Q 048462          129 LQSCIKRLAVVLMASFLLPL-DLRMDH-LETLEIDRCSLESKNDYFGD----------------QGRTRT-------YCF  183 (325)
Q Consensus       129 ~~~~L~~L~l~~~~~~~l~~-l~~l~~-L~~L~l~~~~~~~~~~~~~~----------------~~~~~~-------~~~  183 (325)
                      ...+|+.|+++++....+|. +..+++ |+.|++++|....+...+..                .+.+|.       ...
T Consensus       593 ~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~  672 (876)
T 4ecn_A          593 TNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKG  672 (876)
T ss_dssp             TTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCC
T ss_pred             CCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccC
Confidence            23457888888666556665 777777 88888888765422111000                000010       123


Q ss_pred             ccccEEEecCCCCCCcccc--ccCCCCccEEEEeccCCchhhcccCCCCCCCccccccccCCcccEEeccCCCCcceecc
Q 048462          184 RNLRHLSVKTCPCMTDLKW--IRYAPNLQFLYVSYCPRLSEIIGTYESPGTSEIEESQDFFSNLMVIDLRHLPSLTSICC  261 (325)
Q Consensus       184 ~~L~~L~l~~~~~l~~l~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~  261 (325)
                      ++|+.|++++| .++.++.  +..+++|+.|++++|.. ..+......    .......++++|+.|++++| .+..++.
T Consensus       673 ~~L~~L~Ls~N-~L~~lp~~~~~~l~~L~~L~Ls~N~L-~~ip~~~~~----~~~~~l~nl~~L~~L~Ls~N-~L~~lp~  745 (876)
T 4ecn_A          673 INASTVTLSYN-EIQKFPTELFATGSPISTIILSNNLM-TSIPENSLK----PKDGNYKNTYLLTTIDLRFN-KLTSLSD  745 (876)
T ss_dssp             CCEEEEECCSS-CCCSCCHHHHHTTCCCSEEECCSCCC-SCCCTTSSS----CTTSCCTTGGGCCEEECCSS-CCCCCCG
T ss_pred             CCcCEEEccCC-cCCccCHHHHccCCCCCEEECCCCcC-CccChHHhc----cccccccccCCccEEECCCC-CCccchH
Confidence            36777777776 5655542  23567788888877743 333321000    00011234558999999998 6777877


Q ss_pred             Ccc--cCCCccEEeeeCCCCCCCCCCCCCCcccceeEEec
Q 048462          262 GVV--PFPSLQTISVNGCPSLRKLPLNSGSAKNSLNAIRG  299 (325)
Q Consensus       262 ~~~--~~~~L~~L~l~~c~~l~~ip~~~~~~~~~l~~~~~  299 (325)
                      ...  .+++|+.|++++| .++.+|..+..+ ..+..+..
T Consensus       746 ~l~~~~l~~L~~L~Ls~N-~L~~lp~~l~~L-~~L~~L~L  783 (876)
T 4ecn_A          746 DFRATTLPYLSNMDVSYN-CFSSFPTQPLNS-SQLKAFGI  783 (876)
T ss_dssp             GGSTTTCTTCCEEECCSS-CCSSCCCGGGGC-TTCCEEEC
T ss_pred             HhhhccCCCcCEEEeCCC-CCCccchhhhcC-CCCCEEEC
Confidence            765  7899999999887 788888877766 56666544

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.88  E-value=2.8e-21  Score=178.15  Aligned_cols=260  Identities=18%  Similarity=0.192  Sum_probs=184.4

Q ss_pred             cEEecCCCCCCCcCchhhhCcccCceecCCCCccccc-ChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEecc
Q 048462            5 AVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQL-PTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWFS   83 (325)
Q Consensus         5 ~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~l-p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~   83 (325)
                      +.++.+++ .++.+|..+.  .++++|++++|.++.+ +..+.++++|++|++++|.+....|.. +.++++|++|++++
T Consensus        14 ~~v~c~~~-~l~~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~-~~~l~~L~~L~L~~   89 (477)
T 2id5_A           14 RAVLCHRK-RFVAVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGA-FNNLFNLRTLGLRS   89 (477)
T ss_dssp             TEEECCSC-CCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTT-TTTCTTCCEEECCS
T ss_pred             CEEEeCCC-CcCcCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhh-hhCCccCCEEECCC
Confidence            56777777 7888887664  6899999999999876 457899999999999998776666766 99999999999999


Q ss_pred             cceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeeccc--ccccCCCCCeEEEc
Q 048462           84 TELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLP--LDLRMDHLETLEID  161 (325)
Q Consensus        84 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~--~l~~l~~L~~L~l~  161 (325)
                      |.+       .......+..+++|+.|++++|........  ......+|+.|+++++....++  .+..+++|+.|+++
T Consensus        90 n~l-------~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  160 (477)
T 2id5_A           90 NRL-------KLIPLGVFTGLSNLTKLDISENKIVILLDY--MFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLE  160 (477)
T ss_dssp             SCC-------CSCCTTSSTTCTTCCEEECTTSCCCEECTT--TTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEE
T ss_pred             CcC-------CccCcccccCCCCCCEEECCCCccccCChh--HccccccCCEEECCCCccceeChhhccCCCCCCEEECC
Confidence            987       444445578899999999999987655321  1123346999999976554443  38899999999999


Q ss_pred             CCCCceeccccCCCCCccccccccccEEEecCCCCCCccc--cccCCCCccEEEEeccCCchhhcccCCCC---------
Q 048462          162 RCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDLK--WIRYAPNLQFLYVSYCPRLSEIIGTYESP---------  230 (325)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~--~~~~~~~L~~L~l~~~~~l~~~~~~~~~~---------  230 (325)
                      +|.......     ..  ...+++|+.|+++++ .+..++  .+..+++|++|++++|..+..+.......         
T Consensus       161 ~n~l~~~~~-----~~--l~~l~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  232 (477)
T 2id5_A          161 KCNLTSIPT-----EA--LSHLHGLIVLRLRHL-NINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSIT  232 (477)
T ss_dssp             SCCCSSCCH-----HH--HTTCTTCCEEEEESC-CCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEE
T ss_pred             CCcCcccCh-----hH--hcccCCCcEEeCCCC-cCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECc
Confidence            997642110     00  145678888888887 566543  35567777777777776544433211000         


Q ss_pred             --CCCccc-cccccCCcccEEeccCCCCcceeccC-cccCCCccEEeeeCCCCCCCC-CCCC
Q 048462          231 --GTSEIE-ESQDFFSNLMVIDLRHLPSLTSICCG-VVPFPSLQTISVNGCPSLRKL-PLNS  287 (325)
Q Consensus       231 --~~~~~~-~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~l~~c~~l~~i-p~~~  287 (325)
                        ....++ ..+..+++|+.|+++++ .+..++.. ...+++|+.|++++| .++.+ |..+
T Consensus       233 ~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~  292 (477)
T 2id5_A          233 HCNLTAVPYLAVRHLVYLRFLNLSYN-PISTIEGSMLHELLRLQEIQLVGG-QLAVVEPYAF  292 (477)
T ss_dssp             SSCCCSCCHHHHTTCTTCCEEECCSS-CCCEECTTSCTTCTTCCEEECCSS-CCSEECTTTB
T ss_pred             CCcccccCHHHhcCccccCeeECCCC-cCCccChhhccccccCCEEECCCC-ccceECHHHh
Confidence              111222 24567889999999987 46666543 456889999999887 66654 4343

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.88  E-value=1.4e-21  Score=185.04  Aligned_cols=237  Identities=18%  Similarity=0.206  Sum_probs=181.0

Q ss_pred             CCCCcEEecCCCCCCCcCc-hhhhCcccCceecCCCCcccccChhh-hccccCceeeccCCCCCeeechhhhhCCCcccE
Q 048462            1 MHALAVLDLSYNLDLVKLP-EAIGKLINLCYLNLSNTRIGQLPTGI-TYLKNLKILRLDGMRYLAFVPCQVISSLSSLQV   78 (325)
Q Consensus         1 ~~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~l~~lp~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~   78 (325)
                      +++|++|++++| .++.+| ..++.+++|++|++++|.++.+|..+ .++++|++|++++|.+....|.. +..+++|++
T Consensus        98 l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~  175 (597)
T 3oja_B           98 AHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDT-FQATTSLQN  175 (597)
T ss_dssp             CTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTT-TTTCTTCCE
T ss_pred             CCCCCEEECCCC-cCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhh-hhcCCcCcE
Confidence            578999999999 788775 55799999999999999999888874 89999999999998777666656 899999999


Q ss_pred             EEecccceeeeeeccCccchhhhccCCCcceEEEEec-------------------CcccccccccCccccCCceEEEEc
Q 048462           79 FSWFSTELVELHYVDSTSVLAELESLENIHDISVTLC-------------------NVDAVNRVKSSPKLQSCIKRLAVV  139 (325)
Q Consensus        79 L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~-------------------~~~~~~~~~~~~~~~~~L~~L~l~  139 (325)
                      |++++|.+       ...   .+..+++|+.|++.+|                   ....++..     ...+|+.|+++
T Consensus       176 L~L~~N~l-------~~~---~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~-----~~~~L~~L~L~  240 (597)
T 3oja_B          176 LQLSSNRL-------THV---DLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGP-----VNVELTILKLQ  240 (597)
T ss_dssp             EECTTSCC-------SBC---CGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECS-----CCSCCCEEECC
T ss_pred             EECcCCCC-------CCc---ChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccc-----cCCCCCEEECC
Confidence            99999987       221   1334455555555444                   43333221     12358888888


Q ss_pred             eeeeecccccccCCCCCeEEEcCCCCceeccccCCCCCccccccccccEEEecCCCCCCccccc-cCCCCccEEEEeccC
Q 048462          140 LMASFLLPLDLRMDHLETLEIDRCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDLKWI-RYAPNLQFLYVSYCP  218 (325)
Q Consensus       140 ~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~-~~~~~L~~L~l~~~~  218 (325)
                      ++.....+.+..+++|+.|++++|......     +..+  ..+++|++|+++++ .++.++.. ..+++|+.|++++|.
T Consensus       241 ~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~-----~~~~--~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~Ls~N~  312 (597)
T 3oja_B          241 HNNLTDTAWLLNYPGLVEVDLSYNELEKIM-----YHPF--VKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHNH  312 (597)
T ss_dssp             SSCCCCCGGGGGCTTCSEEECCSSCCCEEE-----SGGG--TTCSSCCEEECTTS-CCCEEECSSSCCTTCCEEECCSSC
T ss_pred             CCCCCCChhhccCCCCCEEECCCCccCCCC-----HHHh--cCccCCCEEECCCC-CCCCCCcccccCCCCcEEECCCCC
Confidence            776666677889999999999999864221     1111  46899999999999 78887643 458999999999996


Q ss_pred             CchhhcccCCCCCCCccccccccCCcccEEeccCCCCcceeccCcccCCCccEEeeeCCC
Q 048462          219 RLSEIIGTYESPGTSEIEESQDFFSNLMVIDLRHLPSLTSICCGVVPFPSLQTISVNGCP  278 (325)
Q Consensus       219 ~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~  278 (325)
                      . ..+            +..+..+++|+.|++++| .+..++  ...+++|+.|++++++
T Consensus       313 l-~~i------------~~~~~~l~~L~~L~L~~N-~l~~~~--~~~~~~L~~L~l~~N~  356 (597)
T 3oja_B          313 L-LHV------------ERNQPQFDRLENLYLDHN-SIVTLK--LSTHHTLKNLTLSHND  356 (597)
T ss_dssp             C-CCC------------GGGHHHHTTCSEEECCSS-CCCCCC--CCTTCCCSEEECCSSC
T ss_pred             C-Ccc------------CcccccCCCCCEEECCCC-CCCCcC--hhhcCCCCEEEeeCCC
Confidence            4 233            346788999999999998 566554  4468999999999874

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.88  E-value=1.4e-21  Score=185.36  Aligned_cols=154  Identities=19%  Similarity=0.264  Sum_probs=81.9

Q ss_pred             CCcEEecCCCCCCCcCc-hhhhCcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEe
Q 048462            3 ALAVLDLSYNLDLVKLP-EAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSW   81 (325)
Q Consensus         3 ~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l   81 (325)
                      .|++|++++| .++.++ ..++.+++|++|++++|.++++|..+.++++|++|++++|.+....|.. +..+++|++|++
T Consensus       255 ~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l  332 (606)
T 3t6q_A          255 SVESINLQKH-YFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQIS-ASNFPSLTHLSI  332 (606)
T ss_dssp             EEEEEECTTC-CCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGC-GGGCTTCSEEEC
T ss_pred             ceeEEEeecC-ccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhh-hhccCcCCEEEC
Confidence            4566666666 555553 3366666666666666666666666666666666666665544443434 566666666666


Q ss_pred             cccceeeeeeccCccc-hhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeeccc--ccccCCCCCeE
Q 048462           82 FSTELVELHYVDSTSV-LAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLP--LDLRMDHLETL  158 (325)
Q Consensus        82 ~~~~~~~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~--~l~~l~~L~~L  158 (325)
                      ++|.+       .... ...+..+++|+.|++++|................+|+.|+++++....++  .+..+++|++|
T Consensus       333 ~~n~~-------~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  405 (606)
T 3t6q_A          333 KGNTK-------RLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELL  405 (606)
T ss_dssp             CSCSS-------CCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEE
T ss_pred             CCCCc-------ccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeE
Confidence            66654       2122 22355556666666665554443211111222234555555544332221  14555555555


Q ss_pred             EEcCCCC
Q 048462          159 EIDRCSL  165 (325)
Q Consensus       159 ~l~~~~~  165 (325)
                      ++++|..
T Consensus       406 ~l~~n~l  412 (606)
T 3t6q_A          406 DLAFTRL  412 (606)
T ss_dssp             ECTTCCE
T ss_pred             ECCCCcC
Confidence            5555543

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.88  E-value=3.1e-21  Score=169.41  Aligned_cols=244  Identities=16%  Similarity=0.153  Sum_probs=182.3

Q ss_pred             CCcEEecCCCCCCCcCchhhhCcccCceecCCCCcccccCh-hhhccccCceeeccCCCCCeeechhhhhCCCcccEEEe
Q 048462            3 ALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPT-GITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSW   81 (325)
Q Consensus         3 ~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l   81 (325)
                      ++++++++++ .++.+|..+.  ++|++|++++|.++.++. .+.++++|++|++++|.+....|.. +.++++|++|++
T Consensus        32 ~l~~l~~~~~-~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L  107 (330)
T 1xku_A           32 HLRVVQCSDL-GLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGA-FAPLVKLERLYL  107 (330)
T ss_dssp             ETTEEECTTS-CCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTT-TTTCTTCCEEEC
T ss_pred             CCeEEEecCC-CccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHH-hcCCCCCCEEEC
Confidence            6788999988 7888886554  688999999998887765 5788999999999997766655666 888999999999


Q ss_pred             cccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeee----cccccccCCCCCe
Q 048462           82 FSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASF----LLPLDLRMDHLET  157 (325)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~----~l~~l~~l~~L~~  157 (325)
                      ++|.+        ..++..+.  ++|+.|++++|....+....  ......|+.|+++++...    ....+..+++|++
T Consensus       108 s~n~l--------~~l~~~~~--~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~  175 (330)
T 1xku_A          108 SKNQL--------KELPEKMP--KTLQELRVHENEITKVRKSV--FNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSY  175 (330)
T ss_dssp             CSSCC--------SBCCSSCC--TTCCEEECCSSCCCBBCHHH--HTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCE
T ss_pred             CCCcC--------CccChhhc--ccccEEECCCCcccccCHhH--hcCCccccEEECCCCcCCccCcChhhccCCCCcCE
Confidence            99887        23333333  78999999888776543311  112345888988865442    2223788999999


Q ss_pred             EEEcCCCCceeccccCCCCCccccccccccEEEecCCCCCCcc--ccccCCCCccEEEEeccCCchhhcccCCCCCCCcc
Q 048462          158 LEIDRCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDL--KWIRYAPNLQFLYVSYCPRLSEIIGTYESPGTSEI  235 (325)
Q Consensus       158 L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l--~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~  235 (325)
                      |++++|...+          +|...+++|++|+++++ .++.+  ..+..+++|++|++++|.. +.+..          
T Consensus       176 L~l~~n~l~~----------l~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~----------  233 (330)
T 1xku_A          176 IRIADTNITT----------IPQGLPPSLTELHLDGN-KITKVDAASLKGLNNLAKLGLSFNSI-SAVDN----------  233 (330)
T ss_dssp             EECCSSCCCS----------CCSSCCTTCSEEECTTS-CCCEECTGGGTTCTTCCEEECCSSCC-CEECT----------
T ss_pred             EECCCCcccc----------CCccccccCCEEECCCC-cCCccCHHHhcCCCCCCEEECCCCcC-ceeCh----------
Confidence            9999988642          23333478999999998 67765  3577889999999999863 32221          


Q ss_pred             ccccccCCcccEEeccCCCCcceeccCcccCCCccEEeeeCCCCCCCCCCCC
Q 048462          236 EESQDFFSNLMVIDLRHLPSLTSICCGVVPFPSLQTISVNGCPSLRKLPLNS  287 (325)
Q Consensus       236 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~ip~~~  287 (325)
                       ..+..+++|+.|++++| .+..++.....+++|++|++++| .++.+|...
T Consensus       234 -~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N-~i~~~~~~~  282 (330)
T 1xku_A          234 -GSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNN-NISAIGSND  282 (330)
T ss_dssp             -TTGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSS-CCCCCCTTS
T ss_pred             -hhccCCCCCCEEECCCC-cCccCChhhccCCCcCEEECCCC-cCCccChhh
Confidence             35678899999999998 67788777778899999999887 788877543

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.88  E-value=2.2e-21  Score=183.98  Aligned_cols=254  Identities=16%  Similarity=0.181  Sum_probs=196.9

Q ss_pred             CCCCcEEecCCCCCCCcCchhhhCcccCceecCCCCccccc-ChhhhccccCceeeccCCCCCeeechhhhhCCCcccEE
Q 048462            1 MHALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQL-PTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVF   79 (325)
Q Consensus         1 ~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~l-p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L   79 (325)
                      +++|++|++++| .++.+|..+..+++|++|++++|.++.+ |..+.++++|++|++++|.....++...+..+++|++|
T Consensus       277 l~~L~~L~l~~n-~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L  355 (606)
T 3t6q_A          277 FSGLQELDLTAT-HLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLREL  355 (606)
T ss_dssp             CTTCSEEECTTS-CCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEE
T ss_pred             ccCCCEEeccCC-ccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEE
Confidence            478999999999 8999999999999999999999999765 55789999999999999888777775548899999999


Q ss_pred             EecccceeeeeeccCccc--hhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecc--cc-cccCCC
Q 048462           80 SWFSTELVELHYVDSTSV--LAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLL--PL-DLRMDH  154 (325)
Q Consensus        80 ~l~~~~~~~~~~~~~~~~--~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l--~~-l~~l~~  154 (325)
                      ++++|.+       ....  +..+..+++|+.|++++|........  .......|+.|+++++.....  +. +..+++
T Consensus       356 ~l~~n~l-------~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~  426 (606)
T 3t6q_A          356 DLSHDDI-------ETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTE--AFKECPQLELLDLAFTRLKVKDAQSPFQNLHL  426 (606)
T ss_dssp             ECCSSCC-------CEEEESTTTTTTCTTCCEEECCSCSCEEECTT--TTTTCTTCSEEECTTCCEECCTTCCTTTTCTT
T ss_pred             ECCCCcc-------ccccCcchhcccCCCCCEEECCCCcCCcCCHH--HhcCCccCCeEECCCCcCCCcccchhhhCccc
Confidence            9999987       3332  56788999999999999986654221  122234699999997665433  33 788999


Q ss_pred             CCeEEEcCCCCceeccccCCCCCccccccccccEEEecCCCCCCcc-----ccccCCCCccEEEEeccCCchhhcccCCC
Q 048462          155 LETLEIDRCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDL-----KWIRYAPNLQFLYVSYCPRLSEIIGTYES  229 (325)
Q Consensus       155 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-----~~~~~~~~L~~L~l~~~~~l~~~~~~~~~  229 (325)
                      |+.|++++|......     +..+  ..+++|++|+++++ .++..     ..+..+++|++|++++|.. +.+.     
T Consensus       427 L~~L~l~~n~l~~~~-----~~~~--~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~-----  492 (606)
T 3t6q_A          427 LKVLNLSHSLLDISS-----EQLF--DGLPALQHLNLQGN-HFPKGNIQKTNSLQTLGRLEILVLSFCDL-SSID-----  492 (606)
T ss_dssp             CCEEECTTCCCBTTC-----TTTT--TTCTTCCEEECTTC-BCGGGEECSSCGGGGCTTCCEEECTTSCC-CEEC-----
T ss_pred             CCEEECCCCccCCcC-----HHHH--hCCCCCCEEECCCC-CCCccccccchhhccCCCccEEECCCCcc-CccC-----
Confidence            999999999864111     1111  46899999999999 66652     3467799999999999964 3332     


Q ss_pred             CCCCccccccccCCcccEEeccCCCCcceeccCcccCCCccEEeeeCCCCCCCCCCC
Q 048462          230 PGTSEIEESQDFFSNLMVIDLRHLPSLTSICCGVVPFPSLQTISVNGCPSLRKLPLN  286 (325)
Q Consensus       230 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~ip~~  286 (325)
                            +..++.+++|+.|++++|.-....+.....++.| .|++++| +++.+|+.
T Consensus       493 ------~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N-~l~~~~~~  541 (606)
T 3t6q_A          493 ------QHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASN-HISIILPS  541 (606)
T ss_dssp             ------TTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSS-CCCCCCGG
T ss_pred             ------hhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCC-cccccCHh
Confidence                  2467889999999999984333445555668889 9999998 77766543

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.88  E-value=1.3e-20  Score=177.14  Aligned_cols=129  Identities=15%  Similarity=0.141  Sum_probs=74.5

Q ss_pred             ccCCCCCeEEEcCCCCceeccccCCCCCccc--cccccccEEEecCCCCCCccc----cccCCCCccEEEEeccCCchhh
Q 048462          150 LRMDHLETLEIDRCSLESKNDYFGDQGRTRT--YCFRNLRHLSVKTCPCMTDLK----WIRYAPNLQFLYVSYCPRLSEI  223 (325)
Q Consensus       150 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~l~~l~----~~~~~~~L~~L~l~~~~~l~~~  223 (325)
                      ..+++|++|++++|...         +..+.  ..+++|++|+++++ .++.++    .+..+++|++|++++|.....+
T Consensus       350 ~~l~~L~~L~l~~n~l~---------~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~  419 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVFT---------DSVFQGCSTLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLNSLNSHA  419 (562)
T ss_dssp             SSCCCCCEEECCSSCCC---------TTTTTTCCSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTSCCBSCC
T ss_pred             cCCCCceEEECCCCccc---------cchhhhhcccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCCcCCCcc
Confidence            34455566666555542         11111  45667777777776 566543    2456677777777776543212


Q ss_pred             cccCCC----C-----CCCcc-ccccccC-CcccEEeccCCCCcceeccCcccCCCccEEeeeCCCCCCCCCCC-CCCc
Q 048462          224 IGTYES----P-----GTSEI-EESQDFF-SNLMVIDLRHLPSLTSICCGVVPFPSLQTISVNGCPSLRKLPLN-SGSA  290 (325)
Q Consensus       224 ~~~~~~----~-----~~~~~-~~~~~~~-~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~ip~~-~~~~  290 (325)
                      ......    .     ..-.+ ......+ ++|+.|++++| .++.++.....+++|++|++++| +++.+|.. +..+
T Consensus       420 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l  496 (562)
T 3a79_B          420 YDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASN-QLKSVPDGVFDRL  496 (562)
T ss_dssp             SSCCCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSS-CCCCCCTTSTTTC
T ss_pred             ChhhhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCC-cCcccChhhcCCCCCCEEECCCC-CCCCCCHHHHhcC
Confidence            211000    0     00000 0111223 68888888887 77788877778899999999887 78888876 4444

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.87  E-value=1.5e-21  Score=185.06  Aligned_cols=262  Identities=16%  Similarity=0.097  Sum_probs=197.3

Q ss_pred             CCCCcEEecCCCCCCCcCchhhhCcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEE
Q 048462            1 MHALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFS   80 (325)
Q Consensus         1 ~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~   80 (325)
                      +++|+.|+++++ .++.+| .+..+++|++|++++|.++.+| .+ .+++|++|++++|......  . +..+++|++|+
T Consensus       284 l~~L~~L~l~~~-~~~~l~-~l~~~~~L~~L~l~~n~l~~lp-~~-~l~~L~~L~l~~n~~~~~~--~-~~~l~~L~~L~  356 (606)
T 3vq2_A          284 LANVSAMSLAGV-SIKYLE-DVPKHFKWQSLSIIRCQLKQFP-TL-DLPFLKSLTLTMNKGSISF--K-KVALPSLSYLD  356 (606)
T ss_dssp             GTTCSEEEEESC-CCCCCC-CCCTTCCCSEEEEESCCCSSCC-CC-CCSSCCEEEEESCSSCEEC--C-CCCCTTCCEEE
T ss_pred             CCCCCEEEecCc-cchhhh-hccccccCCEEEcccccCcccc-cC-CCCccceeeccCCcCccch--h-hccCCCCCEEE
Confidence            367899999999 788888 7888999999999999988888 45 9999999999998666655  2 67899999999


Q ss_pred             ecccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeeccc---ccccCCCCCe
Q 048462           81 WFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLP---LDLRMDHLET  157 (325)
Q Consensus        81 l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~---~l~~l~~L~~  157 (325)
                      +++|.+.     .....+..+..+++|+.|++++|....++.   ......+|+.|+++++.....+   .+..+++|+.
T Consensus       357 ls~n~l~-----~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~---~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~  428 (606)
T 3vq2_A          357 LSRNALS-----FSGCCSYSDLGTNSLRHLDLSFNGAIIMSA---NFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLY  428 (606)
T ss_dssp             CCSSCEE-----EEEECCHHHHCCSCCCEEECCSCSEEEECC---CCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCE
T ss_pred             CcCCccC-----CCcchhhhhccCCcccEeECCCCccccchh---hccCCCCCCeeECCCCccCCccChhhhhccccCCE
Confidence            9999871     111136778889999999999998766542   2223356899999977665443   4788999999


Q ss_pred             EEEcCCCCceeccccCCCCCccccccccccEEEecCCCCCCc--cc-cccCCCCccEEEEeccCCchhhcccCCCCCCCc
Q 048462          158 LEIDRCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTD--LK-WIRYAPNLQFLYVSYCPRLSEIIGTYESPGTSE  234 (325)
Q Consensus       158 L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--l~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~  234 (325)
                      |++++|......     +..+  ..+++|++|++++| .++.  ++ .+..+++|++|++++|... .+.          
T Consensus       429 L~l~~n~l~~~~-----~~~~--~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~----------  489 (606)
T 3vq2_A          429 LDISYTNTKIDF-----DGIF--LGLTSLNTLKMAGN-SFKDNTLSNVFANTTNLTFLDLSKCQLE-QIS----------  489 (606)
T ss_dssp             EECTTSCCEECC-----TTTT--TTCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTSCCC-EEC----------
T ss_pred             EECcCCCCCccc-----hhhh--cCCCCCCEEECCCC-cCCCcchHHhhccCCCCCEEECCCCcCC-ccC----------
Confidence            999999864211     1111  46789999999999 6665  33 4678899999999999643 222          


Q ss_pred             cccccccCCcccEEeccCCCCcceeccCcccCCCccEEeeeCCCCCCCCCCCCCCcccceeEEe
Q 048462          235 IEESQDFFSNLMVIDLRHLPSLTSICCGVVPFPSLQTISVNGCPSLRKLPLNSGSAKNSLNAIR  298 (325)
Q Consensus       235 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~ip~~~~~~~~~l~~~~  298 (325)
                       +..+..+++|++|++++|.-....+.....+++|++|++++| +++.+|..+......+..++
T Consensus       490 -~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~p~~~~~l~~~L~~l~  551 (606)
T 3vq2_A          490 -WGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFN-RIETSKGILQHFPKSLAFFN  551 (606)
T ss_dssp             -TTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTS-CCCCEESCGGGSCTTCCEEE
T ss_pred             -hhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCC-cCcccCHhHhhhcccCcEEE
Confidence             236788999999999998433334666667899999999988 68888887655532344443

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.87  E-value=1.3e-21  Score=179.10  Aligned_cols=251  Identities=18%  Similarity=0.195  Sum_probs=160.7

Q ss_pred             CCCCcEEecCCCCCCC-cC-chhhhCcccCceecCCCCccccc-ChhhhccccCceeeccCCCCCeeec-hhhhhCCCcc
Q 048462            1 MHALAVLDLSYNLDLV-KL-PEAIGKLINLCYLNLSNTRIGQL-PTGITYLKNLKILRLDGMRYLAFVP-CQVISSLSSL   76 (325)
Q Consensus         1 ~~~L~~L~l~~~~~~~-~l-p~~~~~l~~L~~L~l~~~~l~~l-p~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~l~~L   76 (325)
                      |++|++|++++| .+. .+ +..+.++++|++|++++|.++.+ |..+.++++|++|++++|.+.+..+ ...+..+++|
T Consensus        53 l~~L~~L~L~~n-~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L  131 (455)
T 3v47_A           53 LQDLQFLKVEQQ-TPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSL  131 (455)
T ss_dssp             CTTCCEEECCCC-STTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTC
T ss_pred             CccccEEECcCC-cccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccC
Confidence            467778888877 443 44 45577777788888877777544 5667777777777777766554322 1125667777


Q ss_pred             cEEEecccceeeeeeccCccchhh-hccCCCcceEEEEecCccccccc--ccC---------------------------
Q 048462           77 QVFSWFSTELVELHYVDSTSVLAE-LESLENIHDISVTLCNVDAVNRV--KSS---------------------------  126 (325)
Q Consensus        77 ~~L~l~~~~~~~~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~--~~~---------------------------  126 (325)
                      ++|++++|.+       ....+.. +..+++|+.|++++|........  ...                           
T Consensus       132 ~~L~L~~n~l-------~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~  204 (455)
T 3v47_A          132 EMLVLRDNNI-------KKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEK  204 (455)
T ss_dssp             CEEECCSSBC-------CSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHH
T ss_pred             CEEECCCCcc-------CccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccc
Confidence            7777777766       3333333 55666666666666654332110  000                           


Q ss_pred             ---ccccC---------------------------------------------------------------CceEEEEce
Q 048462          127 ---PKLQS---------------------------------------------------------------CIKRLAVVL  140 (325)
Q Consensus       127 ---~~~~~---------------------------------------------------------------~L~~L~l~~  140 (325)
                         .....                                                               .|+.|++++
T Consensus       205 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~  284 (455)
T 3v47_A          205 CGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSK  284 (455)
T ss_dssp             HCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCS
T ss_pred             cccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecC
Confidence               00001                                                               234444443


Q ss_pred             eeeecc-cc-cccCCCCCeEEEcCCCCceeccccCCCCCccccccccccEEEecCCCCCCccc--cccCCCCccEEEEec
Q 048462          141 MASFLL-PL-DLRMDHLETLEIDRCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDLK--WIRYAPNLQFLYVSY  216 (325)
Q Consensus       141 ~~~~~l-~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~--~~~~~~~L~~L~l~~  216 (325)
                      +....+ +. +..+++|++|++++|...+..     +..+  ..+++|++|+++++ .++.+.  .+..+++|++|++++
T Consensus       285 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-----~~~~--~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~  356 (455)
T 3v47_A          285 SKIFALLKSVFSHFTDLEQLTLAQNEINKID-----DNAF--WGLTHLLKLNLSQN-FLGSIDSRMFENLDKLEVLDLSY  356 (455)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECTTSCCCEEC-----TTTT--TTCTTCCEEECCSS-CCCEECGGGGTTCTTCCEEECCS
T ss_pred             ccccccchhhcccCCCCCEEECCCCcccccC-----hhHh--cCcccCCEEECCCC-ccCCcChhHhcCcccCCEEECCC
Confidence            222222 22 667778888888887754221     1111  46789999999999 787763  467899999999999


Q ss_pred             cCCchhhcccCCCCCCCccccccccCCcccEEeccCCCCcceeccCc-ccCCCccEEeeeCCCCCC
Q 048462          217 CPRLSEIIGTYESPGTSEIEESQDFFSNLMVIDLRHLPSLTSICCGV-VPFPSLQTISVNGCPSLR  281 (325)
Q Consensus       217 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~~L~~L~l~~c~~l~  281 (325)
                      |.. +.+.           +..+..+++|++|++++| .++.++... ..+++|+.|+++++ .++
T Consensus       357 N~l-~~~~-----------~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N-~l~  408 (455)
T 3v47_A          357 NHI-RALG-----------DQSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTN-PWD  408 (455)
T ss_dssp             SCC-CEEC-----------TTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS-CBC
T ss_pred             Ccc-cccC-----------hhhccccccccEEECCCC-ccccCCHhHhccCCcccEEEccCC-Ccc
Confidence            964 3332           246788999999999997 677776643 56899999999998 444

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.87  E-value=1.9e-21  Score=184.39  Aligned_cols=111  Identities=19%  Similarity=0.246  Sum_probs=87.8

Q ss_pred             CCCCcEEecCCCCCCCcC-chhhhCcccCceecCCCCccccc-ChhhhccccCceeeccCCCCCeeechhhhhCCCcccE
Q 048462            1 MHALAVLDLSYNLDLVKL-PEAIGKLINLCYLNLSNTRIGQL-PTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQV   78 (325)
Q Consensus         1 ~~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~l~~~~l~~l-p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~   78 (325)
                      +++|++|++++| .++.+ |..++++++|++|++++|.++.+ |..+.++++|++|++++|.+....+.. ++++++|++
T Consensus        55 l~~L~~L~Ls~n-~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~  132 (606)
T 3vq2_A           55 FSELQWLDLSRC-EIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFP-IGQLITLKK  132 (606)
T ss_dssp             CTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSC-CTTCTTCCE
T ss_pred             CccCcEEeCCCC-cccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccc-cCCCCCCCE
Confidence            478899999999 77776 56788899999999999988766 777888999999999987665544455 888889999


Q ss_pred             EEecccceeeeeeccCc-cchhhhccCCCcceEEEEecCcccc
Q 048462           79 FSWFSTELVELHYVDST-SVLAELESLENIHDISVTLCNVDAV  120 (325)
Q Consensus        79 L~l~~~~~~~~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~  120 (325)
                      |++++|.+       .. .++..+..+++|++|++++|.....
T Consensus       133 L~L~~n~l-------~~~~lp~~~~~l~~L~~L~Ls~n~l~~~  168 (606)
T 3vq2_A          133 LNVAHNFI-------HSCKLPAYFSNLTNLVHVDLSYNYIQTI  168 (606)
T ss_dssp             EECCSSCC-------CCCCCCGGGGTCTTCCEEECCSSCCCEE
T ss_pred             EeCCCCcc-------cceechHhHhhcCCCCEEEccCCcceec
Confidence            99988887       32 4577788888888888888875543

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.87  E-value=5e-21  Score=168.09  Aligned_cols=242  Identities=16%  Similarity=0.183  Sum_probs=180.6

Q ss_pred             CCCcEEecCCCCCCCcCch-hhhCcccCceecCCCCccccc-ChhhhccccCceeeccCCCCCeeechhhhhCCCcccEE
Q 048462            2 HALAVLDLSYNLDLVKLPE-AIGKLINLCYLNLSNTRIGQL-PTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVF   79 (325)
Q Consensus         2 ~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~l~~l-p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L   79 (325)
                      +++++|++++| .++.++. .++.+++|++|++++|.++.+ |..+.++++|++|++++|.+. .+|.. +.  ++|++|
T Consensus        52 ~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~-~~--~~L~~L  126 (330)
T 1xku_A           52 PDTALLDLQNN-KITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEK-MP--KTLQEL  126 (330)
T ss_dssp             TTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSS-CC--TTCCEE
T ss_pred             CCCeEEECCCC-cCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChh-hc--ccccEE
Confidence            57899999999 7888864 789999999999999999766 778999999999999996544 56654 33  789999


Q ss_pred             EecccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccccccCCCCCeEE
Q 048462           80 SWFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPLDLRMDHLETLE  159 (325)
Q Consensus        80 ~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~l~~L~~L~  159 (325)
                      ++++|.+       .......+..+++|+.|++++|.................|+.|+++++....+|.- ..++|++|+
T Consensus       127 ~l~~n~l-------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~-~~~~L~~L~  198 (330)
T 1xku_A          127 RVHENEI-------TKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQG-LPPSLTELH  198 (330)
T ss_dssp             ECCSSCC-------CBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSS-CCTTCSEEE
T ss_pred             ECCCCcc-------cccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcc-ccccCCEEE
Confidence            9999987       55556678889999999999887654222222223345689999987766666652 128899999


Q ss_pred             EcCCCCceeccccCCCCCccccccccccEEEecCCCCCCccc--cccCCCCccEEEEeccCCchhhcccCCCCCCCcccc
Q 048462          160 IDRCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDLK--WIRYAPNLQFLYVSYCPRLSEIIGTYESPGTSEIEE  237 (325)
Q Consensus       160 l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~--~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~  237 (325)
                      +++|......     +..+  ..+++|++|+++++ .++.++  .+..+++|++|++++|.. +.+            +.
T Consensus       199 l~~n~l~~~~-----~~~~--~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N~l-~~l------------p~  257 (330)
T 1xku_A          199 LDGNKITKVD-----AASL--KGLNNLAKLGLSFN-SISAVDNGSLANTPHLRELHLNNNKL-VKV------------PG  257 (330)
T ss_dssp             CTTSCCCEEC-----TGGG--TTCTTCCEEECCSS-CCCEECTTTGGGSTTCCEEECCSSCC-SSC------------CT
T ss_pred             CCCCcCCccC-----HHHh--cCCCCCCEEECCCC-cCceeChhhccCCCCCCEEECCCCcC-ccC------------Ch
Confidence            9998864321     1111  46788999999998 677754  467789999999999853 333            34


Q ss_pred             ccccCCcccEEeccCCCCcceeccCcc-------cCCCccEEeeeCCC
Q 048462          238 SQDFFSNLMVIDLRHLPSLTSICCGVV-------PFPSLQTISVNGCP  278 (325)
Q Consensus       238 ~~~~~~~L~~L~l~~~~~l~~~~~~~~-------~~~~L~~L~l~~c~  278 (325)
                      .+..+++|++|++.+| .++.++....       ..+.|+.+++.+++
T Consensus       258 ~l~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~  304 (330)
T 1xku_A          258 GLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNP  304 (330)
T ss_dssp             TTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred             hhccCCCcCEEECCCC-cCCccChhhcCCcccccccccccceEeecCc
Confidence            6778899999999987 5666554322       24778899998875

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.87  E-value=5.4e-22  Score=193.03  Aligned_cols=246  Identities=22%  Similarity=0.215  Sum_probs=162.4

Q ss_pred             CCCCcEEecCCCCCCC-cCchhhhCcccCceecCCCCccc-ccChh-hhccccCceeeccCCCCCeeechhhhhCCC-cc
Q 048462            1 MHALAVLDLSYNLDLV-KLPEAIGKLINLCYLNLSNTRIG-QLPTG-ITYLKNLKILRLDGMRYLAFVPCQVISSLS-SL   76 (325)
Q Consensus         1 ~~~L~~L~l~~~~~~~-~lp~~~~~l~~L~~L~l~~~~l~-~lp~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~-~L   76 (325)
                      |++|++|++++| .++ .+|..++.+++|++|++++|.+. .+|.. +.++++|++|++++|.+.+.+|.. +.+++ +|
T Consensus       293 ~~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~-l~~l~~~L  370 (768)
T 3rgz_A          293 CDTLTGLDLSGN-HFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPES-LTNLSASL  370 (768)
T ss_dssp             CTTCSEEECCSS-EEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTT-HHHHTTTC
T ss_pred             cCcCCEEECcCC-cCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHH-HHhhhcCC
Confidence            467888888888 555 56777888888888888888774 77765 777888888888887666666666 66655 66


Q ss_pred             cEEEecccceeeeee-------------------ccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEE
Q 048462           77 QVFSWFSTELVELHY-------------------VDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLA  137 (325)
Q Consensus        77 ~~L~l~~~~~~~~~~-------------------~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~  137 (325)
                      +.|++++|.+.....                   .-....+..+..+++|+.|++++|...+...  ........|+.|+
T Consensus       371 ~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p--~~l~~l~~L~~L~  448 (768)
T 3rgz_A          371 LTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIP--SSLGSLSKLRDLK  448 (768)
T ss_dssp             SEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCC--GGGGGCTTCCEEE
T ss_pred             cEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCccc--HHHhcCCCCCEEE
Confidence            666666665410000                   0022344556666666666666665442211  1111123467777


Q ss_pred             Eceeeee-cccc-cccCCCCCeEEEcCCCCceeccccCCCCCccc--cccccccEEEecCCCCCC-ccc-cccCCCCccE
Q 048462          138 VVLMASF-LLPL-DLRMDHLETLEIDRCSLESKNDYFGDQGRTRT--YCFRNLRHLSVKTCPCMT-DLK-WIRYAPNLQF  211 (325)
Q Consensus       138 l~~~~~~-~l~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~l~-~l~-~~~~~~~L~~  211 (325)
                      ++++... .+|. +..+++|+.|++++|...         +.+|.  ..+++|++|++++| .++ .++ +++.+++|++
T Consensus       449 L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~---------~~~p~~l~~l~~L~~L~L~~N-~l~~~~p~~~~~l~~L~~  518 (768)
T 3rgz_A          449 LWLNMLEGEIPQELMYVKTLETLILDFNDLT---------GEIPSGLSNCTNLNWISLSNN-RLTGEIPKWIGRLENLAI  518 (768)
T ss_dssp             CCSSCCCSCCCGGGGGCTTCCEEECCSSCCC---------SCCCGGGGGCTTCCEEECCSS-CCCSCCCGGGGGCTTCCE
T ss_pred             CCCCcccCcCCHHHcCCCCceEEEecCCccc---------CcCCHHHhcCCCCCEEEccCC-ccCCcCChHHhcCCCCCE
Confidence            7655443 3444 667777777777777653         23332  57899999999999 566 344 5778999999


Q ss_pred             EEEeccCCchhhcccCCCCCCCccccccccCCcccEEeccCCCCcceeccCcccCCCccEE
Q 048462          212 LYVSYCPRLSEIIGTYESPGTSEIEESQDFFSNLMVIDLRHLPSLTSICCGVVPFPSLQTI  272 (325)
Q Consensus       212 L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L  272 (325)
                      |++++|.....+            +..++.+++|+.|++++|.-...+|........+..+
T Consensus       519 L~L~~N~l~~~~------------p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~  567 (768)
T 3rgz_A          519 LKLSNNSFSGNI------------PAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAA  567 (768)
T ss_dssp             EECCSSCCEEEC------------CGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCC
T ss_pred             EECCCCcccCcC------------CHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhh
Confidence            999999754333            3478899999999999986555677665554444443

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.87  E-value=1.1e-21  Score=171.98  Aligned_cols=220  Identities=18%  Similarity=0.247  Sum_probs=170.9

Q ss_pred             CCCcEEecCCCCCCCcCchhhhCcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEe
Q 048462            2 HALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSW   81 (325)
Q Consensus         2 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l   81 (325)
                      +++++|++++| .++.+|..+..+++|++|++++|.++.+|..+.++++|++|++++|.+. .+|.. +.++++|++|++
T Consensus        81 ~~l~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~-l~~l~~L~~L~L  157 (328)
T 4fcg_A           81 PGRVALELRSV-PLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR-ALPAS-IASLNRLRELSI  157 (328)
T ss_dssp             TTCCEEEEESS-CCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC-CCCGG-GGGCTTCCEEEE
T ss_pred             cceeEEEccCC-CchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc-cCcHH-HhcCcCCCEEEC
Confidence            57899999999 8999999999999999999999999999999999999999999997766 78887 999999999999


Q ss_pred             cccceeeeeeccCccchhhhc---------cCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccccccC
Q 048462           82 FSTELVELHYVDSTSVLAELE---------SLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPLDLRM  152 (325)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~l~---------~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~l  152 (325)
                      ++|..       ....+..+.         .+++|+.|++++|....++.                         .+..+
T Consensus       158 ~~n~~-------~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~-------------------------~l~~l  205 (328)
T 4fcg_A          158 RACPE-------LTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPA-------------------------SIANL  205 (328)
T ss_dssp             EEETT-------CCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCG-------------------------GGGGC
T ss_pred             CCCCC-------ccccChhHhhccchhhhccCCCCCEEECcCCCcCcchH-------------------------hhcCC
Confidence            99876       344555444         49999999999997653321                         13466


Q ss_pred             CCCCeEEEcCCCCceeccccCCCCCccccccccccEEEecCCCCCCccc-cccCCCCccEEEEeccCCchhhcccCCCCC
Q 048462          153 DHLETLEIDRCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDLK-WIRYAPNLQFLYVSYCPRLSEIIGTYESPG  231 (325)
Q Consensus       153 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~  231 (325)
                      ++|++|++++|......      ..  ...+++|++|++++|.....++ .+..+++|++|++++|.....+.       
T Consensus       206 ~~L~~L~L~~N~l~~l~------~~--l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p-------  270 (328)
T 4fcg_A          206 QNLKSLKIRNSPLSALG------PA--IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLP-------  270 (328)
T ss_dssp             TTCCEEEEESSCCCCCC------GG--GGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCC-------
T ss_pred             CCCCEEEccCCCCCcCc------hh--hccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcc-------
Confidence            77777777777653111      11  1456778888888875444444 45677888888888887655443       


Q ss_pred             CCccccccccCCcccEEeccCCCCcceeccCcccCCCccEEeeeC
Q 048462          232 TSEIEESQDFFSNLMVIDLRHLPSLTSICCGVVPFPSLQTISVNG  276 (325)
Q Consensus       232 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~  276 (325)
                           ..+..+++|+.|++++|.....+|.....+++|+.+.+..
T Consensus       271 -----~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~  310 (328)
T 4fcg_A          271 -----LDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP  310 (328)
T ss_dssp             -----TTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred             -----hhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCH
Confidence                 3677888888888888888888888877888888887754

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.87  E-value=3.3e-21  Score=180.69  Aligned_cols=44  Identities=18%  Similarity=0.294  Sum_probs=29.7

Q ss_pred             ccCCcccEEeccCCCCcceeccCcccCCCccEEeeeCCCCCCCCCCC
Q 048462          240 DFFSNLMVIDLRHLPSLTSICCGVVPFPSLQTISVNGCPSLRKLPLN  286 (325)
Q Consensus       240 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~ip~~  286 (325)
                      ..+++|++|++++| +++.++. ...+++|+.|++++| +++.+|..
T Consensus       448 ~~l~~L~~L~Ls~N-~l~~ip~-~~~l~~L~~L~Ls~N-~l~~~~~~  491 (549)
T 2z81_A          448 LFLPRLQELYISRN-KLKTLPD-ASLFPVLLVMKISRN-QLKSVPDG  491 (549)
T ss_dssp             CCCTTCCEEECCSS-CCSSCCC-GGGCTTCCEEECCSS-CCCCCCTT
T ss_pred             ccCChhcEEECCCC-ccCcCCC-cccCccCCEEecCCC-ccCCcCHH
Confidence            35677777777776 5556655 345778888888776 67766543

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.86  E-value=2.8e-21  Score=169.79  Aligned_cols=242  Identities=17%  Similarity=0.183  Sum_probs=180.1

Q ss_pred             CCCcEEecCCCCCCCcC-chhhhCcccCceecCCCCccccc-ChhhhccccCceeeccCCCCCeeechhhhhCCCcccEE
Q 048462            2 HALAVLDLSYNLDLVKL-PEAIGKLINLCYLNLSNTRIGQL-PTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVF   79 (325)
Q Consensus         2 ~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~l~~~~l~~l-p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L   79 (325)
                      ++|++|++++| .++.+ |..+.++++|++|++++|.++.+ |..+.++++|++|++++|.+. .+|.. +.  ++|++|
T Consensus        54 ~~l~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~-~~--~~L~~L  128 (332)
T 2ft3_A           54 PDTTLLDLQNN-DISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPN-LP--SSLVEL  128 (332)
T ss_dssp             TTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSS-CC--TTCCEE
T ss_pred             CCCeEEECCCC-cCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcc-cc--ccCCEE
Confidence            57999999999 78877 45799999999999999999766 677899999999999996554 66765 43  899999


Q ss_pred             EecccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccccccCCCCCeEE
Q 048462           80 SWFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPLDLRMDHLETLE  159 (325)
Q Consensus        80 ~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~l~~L~~L~  159 (325)
                      ++++|.+       .......+..+++|+.|++.+|............... .|+.|+++++....+|.- ..++|++|+
T Consensus       129 ~l~~n~i-------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~-~~~~L~~L~  199 (332)
T 2ft3_A          129 RIHDNRI-------RKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKD-LPETLNELH  199 (332)
T ss_dssp             ECCSSCC-------CCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSS-SCSSCSCCB
T ss_pred             ECCCCcc-------CccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCcc-ccCCCCEEE
Confidence            9999988       4444456888999999999999875422211111112 588888887766666652 227899999


Q ss_pred             EcCCCCceeccccCCCCCccccccccccEEEecCCCCCCccc--cccCCCCccEEEEeccCCchhhcccCCCCCCCcccc
Q 048462          160 IDRCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDLK--WIRYAPNLQFLYVSYCPRLSEIIGTYESPGTSEIEE  237 (325)
Q Consensus       160 l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~--~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~  237 (325)
                      +++|......     ...+  ..+++|++|+++++ .++.++  .+..+++|++|++++|.. +.+            +.
T Consensus       200 l~~n~i~~~~-----~~~l--~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l-~~l------------p~  258 (332)
T 2ft3_A          200 LDHNKIQAIE-----LEDL--LRYSKLYRLGLGHN-QIRMIENGSLSFLPTLRELHLDNNKL-SRV------------PA  258 (332)
T ss_dssp             CCSSCCCCCC-----TTSS--TTCTTCSCCBCCSS-CCCCCCTTGGGGCTTCCEEECCSSCC-CBC------------CT
T ss_pred             CCCCcCCccC-----HHHh--cCCCCCCEEECCCC-cCCcCChhHhhCCCCCCEEECCCCcC-eec------------Ch
Confidence            9998764221     0111  46789999999998 777765  467889999999998853 333            34


Q ss_pred             ccccCCcccEEeccCCCCcceeccCcc-------cCCCccEEeeeCCCC
Q 048462          238 SQDFFSNLMVIDLRHLPSLTSICCGVV-------PFPSLQTISVNGCPS  279 (325)
Q Consensus       238 ~~~~~~~L~~L~l~~~~~l~~~~~~~~-------~~~~L~~L~l~~c~~  279 (325)
                      .+..+++|+.|+++++ .++.++....       ..+.|+.+++.+++-
T Consensus       259 ~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~  306 (332)
T 2ft3_A          259 GLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNPV  306 (332)
T ss_dssp             TGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSSS
T ss_pred             hhhcCccCCEEECCCC-CCCccChhHccccccccccccccceEeecCcc
Confidence            6788999999999987 5666554321       146789999998853

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.86  E-value=6.6e-22  Score=172.41  Aligned_cols=223  Identities=17%  Similarity=0.144  Sum_probs=177.7

Q ss_pred             CCCCcEEecCC-CCCCCcCchhhhCcccCceecCCCCccc-ccChhhhccccCceeeccCCCCCeeechhhhhCCCcccE
Q 048462            1 MHALAVLDLSY-NLDLVKLPEAIGKLINLCYLNLSNTRIG-QLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQV   78 (325)
Q Consensus         1 ~~~L~~L~l~~-~~~~~~lp~~~~~l~~L~~L~l~~~~l~-~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~   78 (325)
                      +++|++|++++ +...+.+|..++++++|++|++++|.+. .+|..+.++++|++|++++|.+.+.+|.. +..+++|++
T Consensus        75 l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~  153 (313)
T 1ogq_A           75 LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS-ISSLPNLVG  153 (313)
T ss_dssp             CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGG-GGGCTTCCE
T ss_pred             CCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChH-HhcCCCCCe
Confidence            57899999995 6333477999999999999999999996 88999999999999999998887788887 999999999


Q ss_pred             EEecccceeeeeeccCccchhhhccCC-CcceEEEEecCcccc-cccccCccccCCceEEEEceeeeec-ccc-cccCCC
Q 048462           79 FSWFSTELVELHYVDSTSVLAELESLE-NIHDISVTLCNVDAV-NRVKSSPKLQSCIKRLAVVLMASFL-LPL-DLRMDH  154 (325)
Q Consensus        79 L~l~~~~~~~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~-l~~-l~~l~~  154 (325)
                      |++++|.+       ....+..+..++ +|+.|++++|...+. +....  .+ . |+.|+++++.... .|. +..+++
T Consensus       154 L~L~~N~l-------~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~--~l-~-L~~L~Ls~N~l~~~~~~~~~~l~~  222 (313)
T 1ogq_A          154 ITFDGNRI-------SGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFA--NL-N-LAFVDLSRNMLEGDASVLFGSDKN  222 (313)
T ss_dssp             EECCSSCC-------EEECCGGGGCCCTTCCEEECCSSEEEEECCGGGG--GC-C-CSEEECCSSEEEECCGGGCCTTSC
T ss_pred             EECcCCcc-------cCcCCHHHhhhhhcCcEEECcCCeeeccCChHHh--CC-c-ccEEECcCCcccCcCCHHHhcCCC
Confidence            99999998       556788898887 999999999987632 22111  11 2 8999999765543 333 889999


Q ss_pred             CCeEEEcCCCCceeccccCCCCCccc-cccccccEEEecCCCCCC-ccc-cccCCCCccEEEEeccCCchhhcccCCCCC
Q 048462          155 LETLEIDRCSLESKNDYFGDQGRTRT-YCFRNLRHLSVKTCPCMT-DLK-WIRYAPNLQFLYVSYCPRLSEIIGTYESPG  231 (325)
Q Consensus       155 L~~L~l~~~~~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~l~-~l~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~  231 (325)
                      |+.|++++|...         +..+. ..+++|++|+++++ .++ .++ .+..+++|++|++++|.....+.       
T Consensus       223 L~~L~L~~N~l~---------~~~~~~~~l~~L~~L~Ls~N-~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip-------  285 (313)
T 1ogq_A          223 TQKIHLAKNSLA---------FDLGKVGLSKNLNGLDLRNN-RIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-------  285 (313)
T ss_dssp             CSEEECCSSEEC---------CBGGGCCCCTTCCEEECCSS-CCEECCCGGGGGCTTCCEEECCSSEEEEECC-------
T ss_pred             CCEEECCCCcee---------eecCcccccCCCCEEECcCC-cccCcCChHHhcCcCCCEEECcCCcccccCC-------
Confidence            999999999864         11221 45789999999999 676 343 57789999999999997543332       


Q ss_pred             CCccccccccCCcccEEeccCCCCcce
Q 048462          232 TSEIEESQDFFSNLMVIDLRHLPSLTS  258 (325)
Q Consensus       232 ~~~~~~~~~~~~~L~~L~l~~~~~l~~  258 (325)
                            ..+.+++|+.+++.+++.+..
T Consensus       286 ------~~~~l~~L~~l~l~~N~~lc~  306 (313)
T 1ogq_A          286 ------QGGNLQRFDVSAYANNKCLCG  306 (313)
T ss_dssp             ------CSTTGGGSCGGGTCSSSEEES
T ss_pred             ------CCccccccChHHhcCCCCccC
Confidence                  237899999999999875544

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.86  E-value=6e-21  Score=165.77  Aligned_cols=241  Identities=17%  Similarity=0.152  Sum_probs=171.7

Q ss_pred             cEEecCCCCCCCcCchhhhCcccCceecCCCCcccccChh-hhccccCceeeccCCCCCe--eechhhhhCCCcccEEEe
Q 048462            5 AVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTG-ITYLKNLKILRLDGMRYLA--FVPCQVISSLSSLQVFSW   81 (325)
Q Consensus         5 ~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~-l~~l~~L~~L~l~~~~~~~--~~~~~~~~~l~~L~~L~l   81 (325)
                      +.++.+++ .++.+|..+.  ++|++|++++|.++.+|.. +.++++|++|++++|.+..  ..+.. +..+++|++|++
T Consensus        10 ~~l~c~~~-~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~~~~L~~L~L   85 (306)
T 2z66_A           10 TEIRCNSK-GLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQS-DFGTTSLKYLDL   85 (306)
T ss_dssp             TEEECCSS-CCSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHH-HHSCSCCCEEEC
T ss_pred             CEEEcCCC-CcccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccc-cccccccCEEEC
Confidence            46788888 7888887554  6899999999999888876 5889999999999976553  23555 778999999999


Q ss_pred             cccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccc--cccCCCCCeEE
Q 048462           82 FSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPL--DLRMDHLETLE  159 (325)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~--l~~l~~L~~L~  159 (325)
                      ++|.+        ...+..+..+++|+.|+++++............ ...+|+.|+++++.....+.  +..+++|++|+
T Consensus        86 s~n~i--------~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  156 (306)
T 2z66_A           86 SFNGV--------ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL-SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK  156 (306)
T ss_dssp             CSCSE--------EEEEEEEETCTTCCEEECTTSEEESSTTTTTTT-TCTTCCEEECTTSCCEECSTTTTTTCTTCCEEE
T ss_pred             CCCcc--------ccChhhcCCCCCCCEEECCCCcccccccchhhh-hccCCCEEECCCCcCCccchhhcccCcCCCEEE
Confidence            99987        345566788899999999888766554322222 22458888888655443332  77888999999


Q ss_pred             EcCCCCceeccccCCCCCccccccccccEEEecCCCCCCcc--ccccCCCCccEEEEeccCCchhhcccCCCCCCCcccc
Q 048462          160 IDRCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDL--KWIRYAPNLQFLYVSYCPRLSEIIGTYESPGTSEIEE  237 (325)
Q Consensus       160 l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l--~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~  237 (325)
                      +++|...+...    +..+  ..+++|++|+++++ .++.+  ..+..+++|++|++++|.. +.+..           .
T Consensus       157 l~~n~l~~~~~----~~~~--~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~-----------~  217 (306)
T 2z66_A          157 MAGNSFQENFL----PDIF--TELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHNNF-FSLDT-----------F  217 (306)
T ss_dssp             CTTCEEGGGEE----CSCC--TTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCC-SBCCS-----------G
T ss_pred             CCCCccccccc----hhHH--hhCcCCCEEECCCC-CcCCcCHHHhcCCCCCCEEECCCCcc-CccCh-----------h
Confidence            98887542000    1111  45788999999988 67775  3566788999999988863 22221           2


Q ss_pred             ccccCCcccEEeccCCCCcceeccCcccCC-CccEEeeeCC
Q 048462          238 SQDFFSNLMVIDLRHLPSLTSICCGVVPFP-SLQTISVNGC  277 (325)
Q Consensus       238 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~-~L~~L~l~~c  277 (325)
                      .+..+++|+.|++++|.-....+.....++ +|+.|+++++
T Consensus       218 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N  258 (306)
T 2z66_A          218 PYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN  258 (306)
T ss_dssp             GGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTC
T ss_pred             hccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCC
Confidence            456788899999998843333444455564 8999999887

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.86  E-value=8.9e-21  Score=168.04  Aligned_cols=244  Identities=15%  Similarity=0.132  Sum_probs=139.2

Q ss_pred             CCCcEEecCCCCCCCcCch-hhhCcccCceecCCCCcccccC-hhhhccccCceeeccCCCCCeeechhhhhCCCcccEE
Q 048462            2 HALAVLDLSYNLDLVKLPE-AIGKLINLCYLNLSNTRIGQLP-TGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVF   79 (325)
Q Consensus         2 ~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~l~~lp-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L   79 (325)
                      ++|++|++++| .++.+|. .+.++++|++|++++|.++.++ ..+.++++|++|++++|.+. .++...+.++++|++|
T Consensus        52 ~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L  129 (353)
T 2z80_A           52 EAVKSLDLSNN-RITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFL  129 (353)
T ss_dssp             TTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS-SCCHHHHTTCTTCSEE
T ss_pred             ccCcEEECCCC-cCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCC-cCCHhHhCCCccCCEE
Confidence            35667777777 5666643 5666777777777777665543 34666777777777765444 3343326667777777


Q ss_pred             EecccceeeeeeccCccch--hhhccCCCcceEEEEecC-cccccccccCccccCCceEEEEceeeeecc-cc-cccCCC
Q 048462           80 SWFSTELVELHYVDSTSVL--AELESLENIHDISVTLCN-VDAVNRVKSSPKLQSCIKRLAVVLMASFLL-PL-DLRMDH  154 (325)
Q Consensus        80 ~l~~~~~~~~~~~~~~~~~--~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-~~-l~~l~~  154 (325)
                      ++++|.+       . ..+  ..+..+++|+.|++++|. ...+...  .......|+.|+++++....+ |. +..+++
T Consensus       130 ~L~~n~l-------~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~  199 (353)
T 2z80_A          130 NLLGNPY-------K-TLGETSLFSHLTKLQILRVGNMDTFTKIQRK--DFAGLTFLEELEIDASDLQSYEPKSLKSIQN  199 (353)
T ss_dssp             ECTTCCC-------S-SSCSSCSCTTCTTCCEEEEEESSSCCEECTT--TTTTCCEEEEEEEEETTCCEECTTTTTTCSE
T ss_pred             ECCCCCC-------c-ccCchhhhccCCCCcEEECCCCccccccCHH--HccCCCCCCEEECCCCCcCccCHHHHhcccc
Confidence            7777665       2 222  245666777777777663 3322110  111123466666665443332 22 666667


Q ss_pred             CCeEEEcCCCCceeccccCCCCCccc---cccccccEEEecCCCCCCccc-----cccCCCCccEEEEeccCCchhhccc
Q 048462          155 LETLEIDRCSLESKNDYFGDQGRTRT---YCFRNLRHLSVKTCPCMTDLK-----WIRYAPNLQFLYVSYCPRLSEIIGT  226 (325)
Q Consensus       155 L~~L~l~~~~~~~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~l~~l~-----~~~~~~~L~~L~l~~~~~l~~~~~~  226 (325)
                      |++|++++|...          .++.   ..+++|++|+++++ .++.++     .....+.++.+++.++.......  
T Consensus       200 L~~L~l~~n~l~----------~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l--  266 (353)
T 2z80_A          200 VSHLILHMKQHI----------LLLEIFVDVTSSVECLELRDT-DLDTFHFSELSTGETNSLIKKFTFRNVKITDESL--  266 (353)
T ss_dssp             EEEEEEECSCST----------THHHHHHHHTTTEEEEEEESC-BCTTCCCC------CCCCCCEEEEESCBCCHHHH--
T ss_pred             CCeecCCCCccc----------cchhhhhhhcccccEEECCCC-ccccccccccccccccchhhccccccccccCcch--
Confidence            777777666642          1111   23566777777766 455432     12234556666666654322110  


Q ss_pred             CCCCCCCccccccccCCcccEEeccCCCCcceeccCc-ccCCCccEEeeeCC
Q 048462          227 YESPGTSEIEESQDFFSNLMVIDLRHLPSLTSICCGV-VPFPSLQTISVNGC  277 (325)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~~L~~L~l~~c  277 (325)
                            ..++..+..+++|+.|++++| .++.++... ..+++|++|+++++
T Consensus       267 ------~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N  311 (353)
T 2z80_A          267 ------FQVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTN  311 (353)
T ss_dssp             ------HHHHHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             ------hhhHHHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCC
Confidence                  122345667788888888886 666776654 56788888888877

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.86  E-value=8.5e-21  Score=173.69  Aligned_cols=182  Identities=16%  Similarity=0.210  Sum_probs=117.1

Q ss_pred             CCCCcEEecCCCCCCCcCchhhhCcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEE
Q 048462            1 MHALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFS   80 (325)
Q Consensus         1 ~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~   80 (325)
                      +++|++|++++| .++.+| .++.+++|++|++++|.++.+|  +.++++|++|++++|.+.+ ++   ++.+++|++|+
T Consensus        41 l~~L~~L~Ls~n-~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~-~~---~~~l~~L~~L~  112 (457)
T 3bz5_A           41 LATLTSLDCHNS-SITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTN-LD---VTPLTKLTYLN  112 (457)
T ss_dssp             HTTCCEEECCSS-CCCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSC-CC---CTTCTTCCEEE
T ss_pred             cCCCCEEEccCC-CcccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCce-ee---cCCCCcCCEEE
Confidence            367888888888 787776 5888888888888888887775  7788888888888866544 33   67788888888


Q ss_pred             ecccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEcee-------------------
Q 048462           81 WFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLM-------------------  141 (325)
Q Consensus        81 l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-------------------  141 (325)
                      +++|.+       .. .  .+..+++|+.|++++|....++ +    .....|+.|+++++                   
T Consensus       113 L~~N~l-------~~-l--~~~~l~~L~~L~l~~N~l~~l~-l----~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l  177 (457)
T 3bz5_A          113 CDTNKL-------TK-L--DVSQNPLLTYLNCARNTLTEID-V----SHNTQLTELDCHLNKKITKLDVTPQTQLTTLDC  177 (457)
T ss_dssp             CCSSCC-------SC-C--CCTTCTTCCEEECTTSCCSCCC-C----TTCTTCCEEECTTCSCCCCCCCTTCTTCCEEEC
T ss_pred             CCCCcC-------Ce-e--cCCCCCcCCEEECCCCccceec-c----ccCCcCCEEECCCCCcccccccccCCcCCEEEC
Confidence            888876       22 2  2666777777777777655431 1    11123444444433                   


Q ss_pred             ---eeecccccccCCCCCeEEEcCCCCceeccccCCCCCccccccccccEEEecCCCCCCccccccCCCCccEEEEeccC
Q 048462          142 ---ASFLLPLDLRMDHLETLEIDRCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDLKWIRYAPNLQFLYVSYCP  218 (325)
Q Consensus       142 ---~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~  218 (325)
                         ....+| +..+++|+.|++++|....          ++...+++|++|+++++ +++.++ +..+++|++|++++|.
T Consensus       178 s~n~l~~l~-l~~l~~L~~L~l~~N~l~~----------~~l~~l~~L~~L~Ls~N-~l~~ip-~~~l~~L~~L~l~~N~  244 (457)
T 3bz5_A          178 SFNKITELD-VSQNKLLNRLNCDTNNITK----------LDLNQNIQLTFLDCSSN-KLTEID-VTPLTQLTYFDCSVNP  244 (457)
T ss_dssp             CSSCCCCCC-CTTCTTCCEEECCSSCCSC----------CCCTTCTTCSEEECCSS-CCSCCC-CTTCTTCSEEECCSSC
T ss_pred             CCCccceec-cccCCCCCEEECcCCcCCe----------eccccCCCCCEEECcCC-cccccC-ccccCCCCEEEeeCCc
Confidence               322333 3444444444444444321          12245667777777777 666665 5567777777777664

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.86  E-value=9.3e-21  Score=177.60  Aligned_cols=106  Identities=23%  Similarity=0.313  Sum_probs=66.2

Q ss_pred             CCCcEEecCCCCCCCcC-chhhhCcccCceecCCCCcccccC-hhhhccccCceeeccCCCCCeeechhhhhCCCcccEE
Q 048462            2 HALAVLDLSYNLDLVKL-PEAIGKLINLCYLNLSNTRIGQLP-TGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVF   79 (325)
Q Consensus         2 ~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~l~~~~l~~lp-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L   79 (325)
                      ++|++|++++| .++.+ |..+.++++|++|++++|.++.++ ..+.++++|++|++++|.+....+.. ++++++|++|
T Consensus        26 ~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L  103 (549)
T 2z81_A           26 AAMKSLDLSFN-KITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSW-FGPLSSLKYL  103 (549)
T ss_dssp             TTCCEEECCSS-CCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHH-HTTCTTCCEE
T ss_pred             CCccEEECcCC-ccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHH-hccCCCCcEE
Confidence            35777777777 56655 456777777777777777775544 45667777777777776555444444 6777777777


Q ss_pred             EecccceeeeeeccCc-cchhhhccCCCcceEEEEecC
Q 048462           80 SWFSTELVELHYVDST-SVLAELESLENIHDISVTLCN  116 (325)
Q Consensus        80 ~l~~~~~~~~~~~~~~-~~~~~l~~l~~L~~L~l~~~~  116 (325)
                      ++++|.+       .. ..+..+..+++|+.|++++|.
T Consensus       104 ~Ls~n~l-------~~~~~~~~~~~l~~L~~L~L~~n~  134 (549)
T 2z81_A          104 NLMGNPY-------QTLGVTSLFPNLTNLQTLRIGNVE  134 (549)
T ss_dssp             ECTTCCC-------SSSCSSCSCTTCTTCCEEEEEESS
T ss_pred             ECCCCcc-------cccchhhhhhccCCccEEECCCCc
Confidence            7777765       21 223345555555555555554

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.86  E-value=7e-21  Score=167.30  Aligned_cols=242  Identities=17%  Similarity=0.138  Sum_probs=172.4

Q ss_pred             CCcEEecCCCCCCCcCchhhhCcccCceecCCCCcccccC-hhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEe
Q 048462            3 ALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLP-TGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSW   81 (325)
Q Consensus         3 ~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l   81 (325)
                      ++++++++++ .++.+|..+.  ++|++|++++|.++.++ ..+.++++|++|++++|.+....|.. +.++++|++|++
T Consensus        34 ~l~~l~~~~~-~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L  109 (332)
T 2ft3_A           34 HLRVVQCSDL-GLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKA-FSPLRKLQKLYI  109 (332)
T ss_dssp             ETTEEECCSS-CCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGG-STTCTTCCEEEC
T ss_pred             cCCEEECCCC-CccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhH-hhCcCCCCEEEC
Confidence            5778888888 7777776553  57888888888877664 36778888888888887665555655 788888888888


Q ss_pred             cccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeee---cccc-cccCCCCCe
Q 048462           82 FSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASF---LLPL-DLRMDHLET  157 (325)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~---~l~~-l~~l~~L~~  157 (325)
                      ++|.+        ..++..+.  ++|++|++++|....++...  .....+|+.|+++++...   ..+. +..+ +|+.
T Consensus       110 ~~n~l--------~~l~~~~~--~~L~~L~l~~n~i~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~  176 (332)
T 2ft3_A          110 SKNHL--------VEIPPNLP--SSLVELRIHDNRIRKVPKGV--FSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNY  176 (332)
T ss_dssp             CSSCC--------CSCCSSCC--TTCCEEECCSSCCCCCCSGG--GSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSC
T ss_pred             CCCcC--------CccCcccc--ccCCEEECCCCccCccCHhH--hCCCccCCEEECCCCccccCCCCcccccCC-ccCE
Confidence            88876        23333333  67888888888766543211  112345788888765442   1122 5555 7888


Q ss_pred             EEEcCCCCceeccccCCCCCccccccccccEEEecCCCCCCccc--cccCCCCccEEEEeccCCchhhcccCCCCCCCcc
Q 048462          158 LEIDRCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDLK--WIRYAPNLQFLYVSYCPRLSEIIGTYESPGTSEI  235 (325)
Q Consensus       158 L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~--~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~  235 (325)
                      |++++|....          +|...+++|++|+++++ .++.++  .+..+++|++|++++|.. +.+.           
T Consensus       177 L~l~~n~l~~----------l~~~~~~~L~~L~l~~n-~i~~~~~~~l~~l~~L~~L~L~~N~l-~~~~-----------  233 (332)
T 2ft3_A          177 LRISEAKLTG----------IPKDLPETLNELHLDHN-KIQAIELEDLLRYSKLYRLGLGHNQI-RMIE-----------  233 (332)
T ss_dssp             CBCCSSBCSS----------CCSSSCSSCSCCBCCSS-CCCCCCTTSSTTCTTCSCCBCCSSCC-CCCC-----------
T ss_pred             EECcCCCCCc----------cCccccCCCCEEECCCC-cCCccCHHHhcCCCCCCEEECCCCcC-CcCC-----------
Confidence            8888777532          33333478999999998 777764  577889999999999863 3222           


Q ss_pred             ccccccCCcccEEeccCCCCcceeccCcccCCCccEEeeeCCCCCCCCCCC
Q 048462          236 EESQDFFSNLMVIDLRHLPSLTSICCGVVPFPSLQTISVNGCPSLRKLPLN  286 (325)
Q Consensus       236 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~ip~~  286 (325)
                      +..+..+++|+.|++++| .+..++.....+++|+.|+++++ .++.+|..
T Consensus       234 ~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N-~l~~~~~~  282 (332)
T 2ft3_A          234 NGSLSFLPTLRELHLDNN-KLSRVPAGLPDLKLLQVVYLHTN-NITKVGVN  282 (332)
T ss_dssp             TTGGGGCTTCCEEECCSS-CCCBCCTTGGGCTTCCEEECCSS-CCCBCCTT
T ss_pred             hhHhhCCCCCCEEECCCC-cCeecChhhhcCccCCEEECCCC-CCCccChh
Confidence            136778999999999998 77788888888999999999987 78888754

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.86  E-value=3.2e-20  Score=178.39  Aligned_cols=106  Identities=19%  Similarity=0.258  Sum_probs=56.0

Q ss_pred             CCcEEecCCCCCCCcCc-hhhhCcccCceecCCCCccccc-ChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEE
Q 048462            3 ALAVLDLSYNLDLVKLP-EAIGKLINLCYLNLSNTRIGQL-PTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFS   80 (325)
Q Consensus         3 ~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~l~~l-p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~   80 (325)
                      ++++|++++| .++.+| ..++++++|++|++++|.++.+ |..+.++++|++|++++|.+. .+|...++++++|++|+
T Consensus        26 ~l~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~  103 (680)
T 1ziw_A           26 NITVLNLTHN-QLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS-QLSDKTFAFCTNLTELH  103 (680)
T ss_dssp             TCSEEECCSS-CCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEE
T ss_pred             CCcEEECCCC-CCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccC-ccChhhhccCCCCCEEE
Confidence            4566666666 555553 3456666666666666655433 344555666666666664333 33332255566666666


Q ss_pred             ecccceeeeeeccCccchhhhccCCCcceEEEEecCc
Q 048462           81 WFSTELVELHYVDSTSVLAELESLENIHDISVTLCNV  117 (325)
Q Consensus        81 l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  117 (325)
                      +++|.+       ....+..+..+++|++|++++|..
T Consensus       104 L~~n~l-------~~~~~~~~~~l~~L~~L~Ls~n~l  133 (680)
T 1ziw_A          104 LMSNSI-------QKIKNNPFVKQKNLITLDLSHNGL  133 (680)
T ss_dssp             CCSSCC-------CCCCSCTTTTCTTCCEEECCSSCC
T ss_pred             CCCCcc-------CccChhHccccCCCCEEECCCCcc
Confidence            666554       222223445555555555555543

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.85  E-value=5.8e-20  Score=171.12  Aligned_cols=104  Identities=17%  Similarity=0.263  Sum_probs=62.4

Q ss_pred             CCCcEEecCCCCCCCcCc-hhhhCcccCceecCCCCccccc-ChhhhccccCceeeccCCCCCeeechhhhhCCCcccEE
Q 048462            2 HALAVLDLSYNLDLVKLP-EAIGKLINLCYLNLSNTRIGQL-PTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVF   79 (325)
Q Consensus         2 ~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~l~~l-p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L   79 (325)
                      ++|++|++++| .++.++ ..+..+++|++|++++|.++.+ |..+.++++|++|++++|.+. .+|.  . .+++|++|
T Consensus        21 ~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~--~-~l~~L~~L   95 (520)
T 2z7x_B           21 QKTTILNISQN-YISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISC--H-PTVNLKHL   95 (520)
T ss_dssp             TTCSEEECCSS-CCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEEC--C-CCCCCSEE
T ss_pred             ccccEEECCCC-cccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCc--c-ccCCccEE
Confidence            35666777766 555553 4566666777777776666544 455666666666666665433 4554  2 56666666


Q ss_pred             EecccceeeeeeccCc-cchhhhccCCCcceEEEEecCc
Q 048462           80 SWFSTELVELHYVDST-SVLAELESLENIHDISVTLCNV  117 (325)
Q Consensus        80 ~l~~~~~~~~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~  117 (325)
                      ++++|.+       .. ..+..++.+++|+.|++++|..
T Consensus        96 ~L~~N~l-------~~~~~p~~~~~l~~L~~L~L~~n~l  127 (520)
T 2z7x_B           96 DLSFNAF-------DALPICKEFGNMSQLKFLGLSTTHL  127 (520)
T ss_dssp             ECCSSCC-------SSCCCCGGGGGCTTCCEEEEEESSC
T ss_pred             eccCCcc-------ccccchhhhccCCcceEEEecCccc
Confidence            6666665       22 2345556666666666666554

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.84  E-value=4.5e-20  Score=173.60  Aligned_cols=108  Identities=19%  Similarity=0.231  Sum_probs=68.0

Q ss_pred             CCCCcEEecCCCCCCCcC-chhhhCcccCceecCCCCcccccC-hhhhccccCceeeccCCCCCeeechhhhhCCCcccE
Q 048462            1 MHALAVLDLSYNLDLVKL-PEAIGKLINLCYLNLSNTRIGQLP-TGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQV   78 (325)
Q Consensus         1 ~~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~l~~~~l~~lp-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~   78 (325)
                      |++|++|++++| .++.+ |..++++++|++|++++|.++.++ ..+.++++|++|++++|.+.. ++...++++++|++
T Consensus        51 l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~l~~L~~  128 (570)
T 2z63_A           51 FPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS-LENFPIGHLKTLKE  128 (570)
T ss_dssp             CSSCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCC-STTCSCTTCTTCCE
T ss_pred             CCCceEEECCCC-cCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccccccccc-CCCccccccccccE
Confidence            467777888877 66666 355777777777777777776554 456677777777777754332 33211666667777


Q ss_pred             EEecccceeeeeeccCc-cchhhhccCCCcceEEEEecCc
Q 048462           79 FSWFSTELVELHYVDST-SVLAELESLENIHDISVTLCNV  117 (325)
Q Consensus        79 L~l~~~~~~~~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~  117 (325)
                      |++++|.+       .. ..+..+..+++|++|++++|..
T Consensus       129 L~L~~n~l-------~~~~lp~~~~~l~~L~~L~l~~n~l  161 (570)
T 2z63_A          129 LNVAHNLI-------QSFKLPEYFSNLTNLEHLDLSSNKI  161 (570)
T ss_dssp             EECCSSCC-------CCCCCCGGGGGCTTCCEEECTTSCC
T ss_pred             EecCCCcc-------ceecChhhhcccCCCCEEeCcCCcc
Confidence            77766665       22 2455566666666666665543

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.84  E-value=8.4e-20  Score=167.09  Aligned_cols=168  Identities=15%  Similarity=0.123  Sum_probs=125.1

Q ss_pred             chhhhCcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEecccceeeeeeccCccch
Q 048462           19 PEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVL   98 (325)
Q Consensus        19 p~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~   98 (325)
                      +..++.+++|++|+++++.++.+| .+.++++|++|++++|.+.+ +|   ++.+++|++|++++|.+       .. . 
T Consensus        35 ~~~~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~-~~---~~~l~~L~~L~Ls~N~l-------~~-~-  100 (457)
T 3bz5_A           35 TISEEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITT-LD---LSQNTNLTYLACDSNKL-------TN-L-  100 (457)
T ss_dssp             EEEHHHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSC-CC---CTTCTTCSEEECCSSCC-------SC-C-
T ss_pred             ccChhHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCe-Ec---cccCCCCCEEECcCCCC-------ce-e-
Confidence            456888999999999999998887 68999999999999976554 43   78999999999999988       33 2 


Q ss_pred             hhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccccccCCCCCeEEEcCCCCceeccccCCCCCc
Q 048462           99 AELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPLDLRMDHLETLEIDRCSLESKNDYFGDQGRT  178 (325)
Q Consensus        99 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~  178 (325)
                       .+..+++|+.|++++|....++ +    ....+|+.|+++++....++ +..+++|++|++++|...         +.+
T Consensus       101 -~~~~l~~L~~L~L~~N~l~~l~-~----~~l~~L~~L~l~~N~l~~l~-l~~l~~L~~L~l~~n~~~---------~~~  164 (457)
T 3bz5_A          101 -DVTPLTKLTYLNCDTNKLTKLD-V----SQNPLLTYLNCARNTLTEID-VSHNTQLTELDCHLNKKI---------TKL  164 (457)
T ss_dssp             -CCTTCTTCCEEECCSSCCSCCC-C----TTCTTCCEEECTTSCCSCCC-CTTCTTCCEEECTTCSCC---------CCC
T ss_pred             -ecCCCCcCCEEECCCCcCCeec-C----CCCCcCCEEECCCCccceec-cccCCcCCEEECCCCCcc---------ccc
Confidence             2788999999999999877653 2    23346999999976655553 778899999999988643         111


Q ss_pred             cccccccccEEEecCCCCCCccccccCCCCccEEEEeccC
Q 048462          179 RTYCFRNLRHLSVKTCPCMTDLKWIRYAPNLQFLYVSYCP  218 (325)
Q Consensus       179 ~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~  218 (325)
                      +...+++|++|+++++ +++.++ +..+++|+.|++++|.
T Consensus       165 ~~~~l~~L~~L~ls~n-~l~~l~-l~~l~~L~~L~l~~N~  202 (457)
T 3bz5_A          165 DVTPQTQLTTLDCSFN-KITELD-VSQNKLLNRLNCDTNN  202 (457)
T ss_dssp             CCTTCTTCCEEECCSS-CCCCCC-CTTCTTCCEEECCSSC
T ss_pred             ccccCCcCCEEECCCC-ccceec-cccCCCCCEEECcCCc
Confidence            2244566666666666 555554 4455566666555553

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.84  E-value=3.6e-20  Score=164.17  Aligned_cols=267  Identities=17%  Similarity=0.103  Sum_probs=191.1

Q ss_pred             CCCCcEEecCCCCCCCcCchhhhCcccCceecCCCCcccccCh-hhhccccCceeeccCCCCCeeechhhhhCCCcccEE
Q 048462            1 MHALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPT-GITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVF   79 (325)
Q Consensus         1 ~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L   79 (325)
                      |+.....+.+++ .++.+|..+.  ++|++|++++|.++.++. .+.++++|++|++++|.+....+.. +.++++|++|
T Consensus        30 C~~~~~c~~~~~-~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L  105 (353)
T 2z80_A           30 CDRNGICKGSSG-SLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDS-FSSLGSLEHL  105 (353)
T ss_dssp             ECTTSEEECCST-TCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTT-TTTCTTCCEE
T ss_pred             CCCCeEeeCCCC-Cccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhh-cCCCCCCCEE
Confidence            345566888888 8999998665  599999999999988876 6899999999999998766655555 9999999999


Q ss_pred             EecccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceee-eeccc--ccccCCCCC
Q 048462           80 SWFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMA-SFLLP--LDLRMDHLE  156 (325)
Q Consensus        80 ~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~l~--~l~~l~~L~  156 (325)
                      ++++|.+       .......+..+++|+.|++++|....++... ......+|+.|+++++. ...++  .+..+++|+
T Consensus       106 ~Ls~n~l-------~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~  177 (353)
T 2z80_A          106 DLSYNYL-------SNLSSSWFKPLSSLTFLNLLGNPYKTLGETS-LFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLE  177 (353)
T ss_dssp             ECCSSCC-------SSCCHHHHTTCTTCSEEECTTCCCSSSCSSC-SCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEE
T ss_pred             ECCCCcC-------CcCCHhHhCCCccCCEEECCCCCCcccCchh-hhccCCCCcEEECCCCccccccCHHHccCCCCCC
Confidence            9999988       4444445889999999999999877654411 11223469999999763 33333  388899999


Q ss_pred             eEEEcCCCCceeccccCCCCCccccccccccEEEecCCCCCCcccc--ccCCCCccEEEEeccCCchhhcccCCCCCCCc
Q 048462          157 TLEIDRCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDLKW--IRYAPNLQFLYVSYCPRLSEIIGTYESPGTSE  234 (325)
Q Consensus       157 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~  234 (325)
                      +|++++|......     +..+  ..+++|++|+++++ .++.++.  ...+++|++|++++|.. +......       
T Consensus       178 ~L~l~~n~l~~~~-----~~~l--~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~L~~L~L~~n~l-~~~~~~~-------  241 (353)
T 2z80_A          178 ELEIDASDLQSYE-----PKSL--KSIQNVSHLILHMK-QHILLLEIFVDVTSSVECLELRDTDL-DTFHFSE-------  241 (353)
T ss_dssp             EEEEEETTCCEEC-----TTTT--TTCSEEEEEEEECS-CSTTHHHHHHHHTTTEEEEEEESCBC-TTCCCC--------
T ss_pred             EEECCCCCcCccC-----HHHH--hccccCCeecCCCC-ccccchhhhhhhcccccEEECCCCcc-ccccccc-------
Confidence            9999999864221     1112  46789999999999 6776653  33589999999999863 3322100       


Q ss_pred             cccccccCCcccEEeccCCCC----cceeccCcccCCCccEEeeeCCCCCCCCCCCC-CCcccceeEEe
Q 048462          235 IEESQDFFSNLMVIDLRHLPS----LTSICCGVVPFPSLQTISVNGCPSLRKLPLNS-GSAKNSLNAIR  298 (325)
Q Consensus       235 ~~~~~~~~~~L~~L~l~~~~~----l~~~~~~~~~~~~L~~L~l~~c~~l~~ip~~~-~~~~~~l~~~~  298 (325)
                       .......+.++.++++++.-    +..++.....+++|+.|++++| +++.+|..+ ... ..+..++
T Consensus       242 -l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l-~~L~~L~  307 (353)
T 2z80_A          242 -LSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRL-TSLQKIW  307 (353)
T ss_dssp             ------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCCTTTTTTC-TTCCEEE
T ss_pred             -cccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCC-CCCccCHHHHhcC-CCCCEEE
Confidence             01223456677777777621    2234444556899999999998 888999775 344 4444443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.84  E-value=4.6e-20  Score=168.85  Aligned_cols=222  Identities=16%  Similarity=0.128  Sum_probs=142.3

Q ss_pred             CCCcEEecCCCCCCCcC-chhhhCcccCceecCCCCcccccC-hhhhccccCceeeccCCCCCeeechhhhhCCCcccEE
Q 048462            2 HALAVLDLSYNLDLVKL-PEAIGKLINLCYLNLSNTRIGQLP-TGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVF   79 (325)
Q Consensus         2 ~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~l~~~~l~~lp-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L   79 (325)
                      +++++|++++| .++.+ |..+.++++|++|++++|.++.++ ..+.++++|++|++++|.+. .++...+..+++|++|
T Consensus        75 ~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L  152 (452)
T 3zyi_A           75 SNTRYLNLMEN-NIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLREL  152 (452)
T ss_dssp             TTCSEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS-BCCTTTSSSCTTCCEE
T ss_pred             CCccEEECcCC-cCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCC-ccChhhhcccCCCCEE
Confidence            45778888887 66665 566777888888888888776554 45677888888888876544 3443336777888888


Q ss_pred             EecccceeeeeeccCccchhhhccCCCcceEEEEecCcc-cccccccCccccCCceEEEEceeeeecccccccCCCCCeE
Q 048462           80 SWFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVD-AVNRVKSSPKLQSCIKRLAVVLMASFLLPLDLRMDHLETL  158 (325)
Q Consensus        80 ~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~l~~L~~L  158 (325)
                      ++++|.+       .......+..+++|+.|++.++... .++. . ......+|+.|+++++....+|.+..+++|+.|
T Consensus       153 ~L~~N~l-------~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~-~-~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L  223 (452)
T 3zyi_A          153 WLRNNPI-------ESIPSYAFNRVPSLMRLDLGELKKLEYISE-G-AFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEEL  223 (452)
T ss_dssp             ECCSCCC-------CEECTTTTTTCTTCCEEECCCCTTCCEECT-T-TTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEE
T ss_pred             ECCCCCc-------ceeCHhHHhcCCcccEEeCCCCCCccccCh-h-hccCCCCCCEEECCCCcccccccccccccccEE
Confidence            8888776       3333445677778888887764322 2211 1 111223577777777666667777777788888


Q ss_pred             EEcCCCCceeccccCCCCCccccccccccEEEecCCCCCCccc--cccCCCCccEEEEeccCCchhhcccCCCCCCCccc
Q 048462          159 EIDRCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDLK--WIRYAPNLQFLYVSYCPRLSEIIGTYESPGTSEIE  236 (325)
Q Consensus       159 ~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~--~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~  236 (325)
                      ++++|......     +..+  ..+++|++|+++++ .++.+.  .+..+++|+.|++++|. ++.+..           
T Consensus       224 ~Ls~N~l~~~~-----~~~~--~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~-----------  283 (452)
T 3zyi_A          224 EMSGNHFPEIR-----PGSF--HGLSSLKKLWVMNS-QVSLIERNAFDGLASLVELNLAHNN-LSSLPH-----------  283 (452)
T ss_dssp             ECTTSCCSEEC-----GGGG--TTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC-CSCCCT-----------
T ss_pred             ECcCCcCcccC-----cccc--cCccCCCEEEeCCC-cCceECHHHhcCCCCCCEEECCCCc-CCccCh-----------
Confidence            88777754221     1111  35677888888777 566543  35567778888887774 333322           


Q ss_pred             cccccCCcccEEeccCCC
Q 048462          237 ESQDFFSNLMVIDLRHLP  254 (325)
Q Consensus       237 ~~~~~~~~L~~L~l~~~~  254 (325)
                      ..+..+++|+.|++.+++
T Consensus       284 ~~~~~l~~L~~L~L~~Np  301 (452)
T 3zyi_A          284 DLFTPLRYLVELHLHHNP  301 (452)
T ss_dssp             TSSTTCTTCCEEECCSSC
T ss_pred             HHhccccCCCEEEccCCC
Confidence            245567777888777653

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.84  E-value=2e-19  Score=164.63  Aligned_cols=237  Identities=17%  Similarity=0.224  Sum_probs=131.4

Q ss_pred             cEEecCCCCCCCcCchhhhCcccCceecCCCCccccc-ChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEecc
Q 048462            5 AVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQL-PTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWFS   83 (325)
Q Consensus         5 ~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~l-p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~   83 (325)
                      +.++.++. .++.+|..+.  .++++|++++|.++.+ +..+.++++|++|++++|.+....+.. +.++++|++|++++
T Consensus        57 ~~v~c~~~-~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~L~~  132 (452)
T 3zyi_A           57 SKVVCTRR-GLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGA-FNGLASLNTLELFD  132 (452)
T ss_dssp             CEEECCSS-CCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTT-TTTCTTCCEEECCS
T ss_pred             cEEEECCC-CcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhh-ccCcccCCEEECCC
Confidence            45666666 6667775554  5778888888877655 455777888888888876655544444 77788888888888


Q ss_pred             cceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeee-cccc--cccCCCCCeEEE
Q 048462           84 TELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASF-LLPL--DLRMDHLETLEI  160 (325)
Q Consensus        84 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~l~~--l~~l~~L~~L~l  160 (325)
                      |.+       .......+..+++|+.|++++|....++...  .....+|+.|+++++... .++.  +..+++|++|++
T Consensus       133 n~l-------~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~--~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L  203 (452)
T 3zyi_A          133 NWL-------TVIPSGAFEYLSKLRELWLRNNPIESIPSYA--FNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNL  203 (452)
T ss_dssp             SCC-------SBCCTTTSSSCTTCCEEECCSCCCCEECTTT--TTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEEC
T ss_pred             CcC-------CccChhhhcccCCCCEEECCCCCcceeCHhH--HhcCCcccEEeCCCCCCccccChhhccCCCCCCEEEC
Confidence            776       3334445667778888888777665443211  111223555665542221 2222  455556666666


Q ss_pred             cCCCCceeccccCCCCCccccccccccEEEecCCCCCCccc--cccCCCCccEEEEeccCCchhhcccCCCCCCCccccc
Q 048462          161 DRCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDLK--WIRYAPNLQFLYVSYCPRLSEIIGTYESPGTSEIEES  238 (325)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~--~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~  238 (325)
                      ++|...+.      +   ....+++|++|+++++ .++.+.  .+..+++|+.|++++|.. +.+..           ..
T Consensus       204 ~~n~l~~~------~---~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~-----------~~  261 (452)
T 3zyi_A          204 GMCNIKDM------P---NLTPLVGLEELEMSGN-HFPEIRPGSFHGLSSLKKLWVMNSQV-SLIER-----------NA  261 (452)
T ss_dssp             TTSCCSSC------C---CCTTCTTCCEEECTTS-CCSEECGGGGTTCTTCCEEECTTSCC-CEECT-----------TT
T ss_pred             CCCccccc------c---cccccccccEEECcCC-cCcccCcccccCccCCCEEEeCCCcC-ceECH-----------HH
Confidence            55554211      0   0134555666666655 444432  344555566666655542 22111           23


Q ss_pred             cccCCcccEEeccCCCCcceeccCc-ccCCCccEEeeeCC
Q 048462          239 QDFFSNLMVIDLRHLPSLTSICCGV-VPFPSLQTISVNGC  277 (325)
Q Consensus       239 ~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~~L~~L~l~~c  277 (325)
                      +..+++|+.|++++| .++.++... ..+++|+.|+++++
T Consensus       262 ~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N  300 (452)
T 3zyi_A          262 FDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHN  300 (452)
T ss_dssp             TTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSS
T ss_pred             hcCCCCCCEEECCCC-cCCccChHHhccccCCCEEEccCC
Confidence            445555666666655 444444322 23555666665554

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.84  E-value=1.2e-19  Score=178.31  Aligned_cols=111  Identities=21%  Similarity=0.218  Sum_probs=84.7

Q ss_pred             CCCCcEEecCCCCCCCcC-chhhhCcccCceecCCCCccccc-ChhhhccccCceeeccCCCCCeeech-hhhhCCCccc
Q 048462            1 MHALAVLDLSYNLDLVKL-PEAIGKLINLCYLNLSNTRIGQL-PTGITYLKNLKILRLDGMRYLAFVPC-QVISSLSSLQ   77 (325)
Q Consensus         1 ~~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~l~~~~l~~l-p~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~   77 (325)
                      +++|++|++++|..+..+ |..+.++++|++|++++|.+..+ |..+.++++|++|++++|......+. ..+.++++|+
T Consensus        47 l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~  126 (844)
T 3j0a_A           47 LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALT  126 (844)
T ss_dssp             CCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCC
T ss_pred             cccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCC
Confidence            468889999988556666 67788899999999999888655 77788899999999988776654442 2267888899


Q ss_pred             EEEecccceeeeeeccCccc-hhhhccCCCcceEEEEecCcc
Q 048462           78 VFSWFSTELVELHYVDSTSV-LAELESLENIHDISVTLCNVD  118 (325)
Q Consensus        78 ~L~l~~~~~~~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~  118 (325)
                      +|++++|.+       .... ...++.+++|+.|++++|...
T Consensus       127 ~L~Ls~N~l-------~~~~~~~~~~~L~~L~~L~Ls~N~i~  161 (844)
T 3j0a_A          127 RLDLSKNQI-------RSLYLHPSFGKLNSLKSIDFSSNQIF  161 (844)
T ss_dssp             EEEEESCCC-------CCCCCCGGGGTCSSCCEEEEESSCCC
T ss_pred             EEECCCCcc-------cccccchhHhhCCCCCEEECCCCcCC
Confidence            999888877       3332 356788888888888887654

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.84  E-value=8.7e-20  Score=171.68  Aligned_cols=84  Identities=26%  Similarity=0.256  Sum_probs=65.1

Q ss_pred             CCCCcEEecCCCCCCCcCc-hhhhCcccCceecCCCCcccccCh-hhhccccCceeeccCCCCCe-eechhhhhCCCccc
Q 048462            1 MHALAVLDLSYNLDLVKLP-EAIGKLINLCYLNLSNTRIGQLPT-GITYLKNLKILRLDGMRYLA-FVPCQVISSLSSLQ   77 (325)
Q Consensus         1 ~~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~l~~~~~~~-~~~~~~~~~l~~L~   77 (325)
                      |++|++|++++| .++.++ ..++++++|++|++++|.++.++. .++++++|++|++++|.+.. .+|.. ++++++|+
T Consensus        75 l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~  152 (570)
T 2z63_A           75 LSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLE  152 (570)
T ss_dssp             CTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCC
T ss_pred             chhCCEEeCcCC-cCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhh-hcccCCCC
Confidence            467888888888 677664 678888888888888888876665 47788888888888876554 45766 88888888


Q ss_pred             EEEecccce
Q 048462           78 VFSWFSTEL   86 (325)
Q Consensus        78 ~L~l~~~~~   86 (325)
                      +|++++|.+
T Consensus       153 ~L~l~~n~l  161 (570)
T 2z63_A          153 HLDLSSNKI  161 (570)
T ss_dssp             EEECTTSCC
T ss_pred             EEeCcCCcc
Confidence            888888765

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.84  E-value=1.6e-19  Score=177.32  Aligned_cols=131  Identities=18%  Similarity=0.205  Sum_probs=105.4

Q ss_pred             CCCcEEecCCCCCCCcC-chhhhCcccCceecCCCCc-cccc-ChhhhccccCceeeccCCCCCeeechhhhhCCCcccE
Q 048462            2 HALAVLDLSYNLDLVKL-PEAIGKLINLCYLNLSNTR-IGQL-PTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQV   78 (325)
Q Consensus         2 ~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~l~~~~-l~~l-p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~   78 (325)
                      +++++|++++| .++.+ |..++++++|++|++++|. ...+ |..+.++++|++|++++|.+....|.. +.++++|++
T Consensus        24 ~~l~~LdLs~N-~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~  101 (844)
T 3j0a_A           24 NTTERLLLSFN-YIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDA-FQGLFHLFE  101 (844)
T ss_dssp             TTCCEEEEESC-CCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTS-SCSCSSCCC
T ss_pred             CCcCEEECCCC-cCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhH-ccCCcccCE
Confidence            67999999999 78876 6889999999999999994 4666 677999999999999998877777777 999999999


Q ss_pred             EEecccceeeeeeccCccchhh--hccCCCcceEEEEecCcccccccccCccccCCceEEEEceee
Q 048462           79 FSWFSTELVELHYVDSTSVLAE--LESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMA  142 (325)
Q Consensus        79 L~l~~~~~~~~~~~~~~~~~~~--l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  142 (325)
                      |++++|.+       ....+..  +..+++|++|++++|.......-... ....+|+.|+++++.
T Consensus       102 L~Ls~n~l-------~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~-~~L~~L~~L~Ls~N~  159 (844)
T 3j0a_A          102 LRLYFCGL-------SDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSF-GKLNSLKSIDFSSNQ  159 (844)
T ss_dssp             EECTTCCC-------SSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGG-GTCSSCCEEEEESSC
T ss_pred             eeCcCCCC-------CcccccCccccccCCCCEEECCCCcccccccchhH-hhCCCCCEEECCCCc
Confidence            99999988       4444444  88999999999999987654321111 223458889888643

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.83  E-value=6.6e-20  Score=167.25  Aligned_cols=222  Identities=16%  Similarity=0.149  Sum_probs=140.3

Q ss_pred             CCCcEEecCCCCCCCcCc-hhhhCcccCceecCCCCcccccC-hhhhccccCceeeccCCCCCeeechhhhhCCCcccEE
Q 048462            2 HALAVLDLSYNLDLVKLP-EAIGKLINLCYLNLSNTRIGQLP-TGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVF   79 (325)
Q Consensus         2 ~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~l~~lp-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L   79 (325)
                      ++++.|++++| .++.++ ..+.++++|++|++++|.++.++ ..+.++++|++|++++|.+. .++...+..+++|++|
T Consensus        64 ~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L  141 (440)
T 3zyj_A           64 TNTRLLNLHEN-QIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKEL  141 (440)
T ss_dssp             TTCSEEECCSC-CCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCS-SCCTTTSCSCSSCCEE
T ss_pred             CCCcEEEccCC-cCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCC-eeCHhHhhccccCcee
Confidence            35777777777 666653 56777777888888777776554 44677777888888776444 3443226777778888


Q ss_pred             EecccceeeeeeccCccchhhhccCCCcceEEEEecCccc-ccccccCccccCCceEEEEceeeeecccccccCCCCCeE
Q 048462           80 SWFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDA-VNRVKSSPKLQSCIKRLAVVLMASFLLPLDLRMDHLETL  158 (325)
Q Consensus        80 ~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~l~~L~~L  158 (325)
                      ++++|.+       .......+..+++|+.|++.++.... +.. . ...-..+|+.|+++++....+|.+..+++|+.|
T Consensus       142 ~L~~N~i-------~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~-~-~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L  212 (440)
T 3zyj_A          142 WLRNNPI-------ESIPSYAFNRIPSLRRLDLGELKRLSYISE-G-AFEGLSNLRYLNLAMCNLREIPNLTPLIKLDEL  212 (440)
T ss_dssp             ECCSCCC-------CEECTTTTTTCTTCCEEECCCCTTCCEECT-T-TTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEE
T ss_pred             eCCCCcc-------cccCHHHhhhCcccCEeCCCCCCCcceeCc-c-hhhcccccCeecCCCCcCccccccCCCcccCEE
Confidence            8877776       33334456677777777777643222 211 1 111223577777777666677777777777778


Q ss_pred             EEcCCCCceeccccCCCCCccccccccccEEEecCCCCCCccc--cccCCCCccEEEEeccCCchhhcccCCCCCCCccc
Q 048462          159 EIDRCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDLK--WIRYAPNLQFLYVSYCPRLSEIIGTYESPGTSEIE  236 (325)
Q Consensus       159 ~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~--~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~  236 (325)
                      ++++|......     +..+  ..+++|++|+++++ .++.+.  .+..+++|++|+|++|. ++.+..           
T Consensus       213 ~Ls~N~l~~~~-----~~~~--~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~-----------  272 (440)
T 3zyj_A          213 DLSGNHLSAIR-----PGSF--QGLMHLQKLWMIQS-QIQVIERNAFDNLQSLVEINLAHNN-LTLLPH-----------  272 (440)
T ss_dssp             ECTTSCCCEEC-----TTTT--TTCTTCCEEECTTC-CCCEECTTSSTTCTTCCEEECTTSC-CCCCCT-----------
T ss_pred             ECCCCccCccC-----hhhh--ccCccCCEEECCCC-ceeEEChhhhcCCCCCCEEECCCCC-CCccCh-----------
Confidence            77777654221     1111  35677777777777 666653  45567777777777774 333322           


Q ss_pred             cccccCCcccEEeccCCC
Q 048462          237 ESQDFFSNLMVIDLRHLP  254 (325)
Q Consensus       237 ~~~~~~~~L~~L~l~~~~  254 (325)
                      ..+..+++|+.|++.+++
T Consensus       273 ~~~~~l~~L~~L~L~~Np  290 (440)
T 3zyj_A          273 DLFTPLHHLERIHLHHNP  290 (440)
T ss_dssp             TTTSSCTTCCEEECCSSC
T ss_pred             hHhccccCCCEEEcCCCC
Confidence            245567777777777653

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.83  E-value=3e-19  Score=162.92  Aligned_cols=238  Identities=17%  Similarity=0.237  Sum_probs=126.2

Q ss_pred             CcEEecCCCCCCCcCchhhhCcccCceecCCCCcccccC-hhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEec
Q 048462            4 LAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLP-TGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWF   82 (325)
Q Consensus         4 L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~   82 (325)
                      .+.++.++. .++.+|..+.  .++++|++++|.++.++ ..+.++++|++|++++|.+....+.. +.++++|++|+++
T Consensus        45 ~~~v~c~~~-~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~-~~~l~~L~~L~L~  120 (440)
T 3zyj_A           45 FSKVICVRK-NLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGA-FNGLANLNTLELF  120 (440)
T ss_dssp             SCEEECCSC-CCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGG-GTTCSSCCEEECC
T ss_pred             CCEEEeCCC-CcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhh-ccCCccCCEEECC
Confidence            345555665 6667766554  56777777777776554 45677777777777776554433344 7777777777777


Q ss_pred             ccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeee-cccc--cccCCCCCeEE
Q 048462           83 STELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASF-LLPL--DLRMDHLETLE  159 (325)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~l~~--l~~l~~L~~L~  159 (325)
                      +|.+       .......+..+++|+.|++++|....++...  .....+|+.|+++++... .++.  +..+++|++|+
T Consensus       121 ~n~l-------~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~--~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~  191 (440)
T 3zyj_A          121 DNRL-------TTIPNGAFVYLSKLKELWLRNNPIESIPSYA--FNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLN  191 (440)
T ss_dssp             SSCC-------SSCCTTTSCSCSSCCEEECCSCCCCEECTTT--TTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEE
T ss_pred             CCcC-------CeeCHhHhhccccCceeeCCCCcccccCHHH--hhhCcccCEeCCCCCCCcceeCcchhhcccccCeec
Confidence            7776       3333445667777777777777655433211  111223555555542221 1221  44555555555


Q ss_pred             EcCCCCceeccccCCCCCccccccccccEEEecCCCCCCccc--cccCCCCccEEEEeccCCchhhcccCCCCCCCcccc
Q 048462          160 IDRCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDLK--WIRYAPNLQFLYVSYCPRLSEIIGTYESPGTSEIEE  237 (325)
Q Consensus       160 l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~--~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~  237 (325)
                      +++|...+.      +.   ...+++|++|+++++ .++.+.  .+..+++|+.|++++|.. +.+..           .
T Consensus       192 L~~n~l~~~------~~---~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~-----------~  249 (440)
T 3zyj_A          192 LAMCNLREI------PN---LTPLIKLDELDLSGN-HLSAIRPGSFQGLMHLQKLWMIQSQI-QVIER-----------N  249 (440)
T ss_dssp             CTTSCCSSC------CC---CTTCSSCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTCCC-CEECT-----------T
T ss_pred             CCCCcCccc------cc---cCCCcccCEEECCCC-ccCccChhhhccCccCCEEECCCCce-eEECh-----------h
Confidence            555543211      00   133455555555555 444432  344455555555555532 22211           2


Q ss_pred             ccccCCcccEEeccCCCCcceeccCc-ccCCCccEEeeeCC
Q 048462          238 SQDFFSNLMVIDLRHLPSLTSICCGV-VPFPSLQTISVNGC  277 (325)
Q Consensus       238 ~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~~L~~L~l~~c  277 (325)
                      .+..+++|+.|++++| .++.++... ..+++|+.|+++++
T Consensus       250 ~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N  289 (440)
T 3zyj_A          250 AFDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHHN  289 (440)
T ss_dssp             SSTTCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEEECCSS
T ss_pred             hhcCCCCCCEEECCCC-CCCccChhHhccccCCCEEEcCCC
Confidence            3445555555555554 444443322 23455555555544

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.83  E-value=5e-19  Score=166.35  Aligned_cols=105  Identities=22%  Similarity=0.289  Sum_probs=67.5

Q ss_pred             CCCcEEecCCCCCCCcCc-hhhhCcccCceecCCCCccccc-ChhhhccccCceeeccCCCCCeeechhhhhCCCcccEE
Q 048462            2 HALAVLDLSYNLDLVKLP-EAIGKLINLCYLNLSNTRIGQL-PTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVF   79 (325)
Q Consensus         2 ~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~l~~l-p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L   79 (325)
                      ++|++|++++| .++.++ ..++++++|++|++++|.++.+ |..+.++++|++|++++|.+. .+|..   .+++|++|
T Consensus        52 ~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~---~l~~L~~L  126 (562)
T 3a79_B           52 PRTKALSLSQN-SISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC---PMASLRHL  126 (562)
T ss_dssp             TTCCEEECCSS-CCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC---CCTTCSEE
T ss_pred             CCcCEEECCCC-CccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc---ccccCCEE
Confidence            45677777777 566664 5677777777777777777655 445667777777777775443 55542   56777777


Q ss_pred             EecccceeeeeeccCc-cchhhhccCCCcceEEEEecCcc
Q 048462           80 SWFSTELVELHYVDST-SVLAELESLENIHDISVTLCNVD  118 (325)
Q Consensus        80 ~l~~~~~~~~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~  118 (325)
                      ++++|.+       .. ..+..+..+++|+.|+++++...
T Consensus       127 ~Ls~N~l-------~~l~~p~~~~~l~~L~~L~L~~n~l~  159 (562)
T 3a79_B          127 DLSFNDF-------DVLPVCKEFGNLTKLTFLGLSAAKFR  159 (562)
T ss_dssp             ECCSSCC-------SBCCCCGGGGGCTTCCEEEEECSBCC
T ss_pred             ECCCCCc-------cccCchHhhcccCcccEEecCCCccc
Confidence            7777765       22 22356666677777777666544

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.83  E-value=9.4e-20  Score=158.21  Aligned_cols=221  Identities=19%  Similarity=0.175  Sum_probs=170.6

Q ss_pred             CCCcEEecCCCCCCCcCchh-hhCcccCceecCCCCccccc---ChhhhccccCceeeccCCCCCeeechhhhhCCCccc
Q 048462            2 HALAVLDLSYNLDLVKLPEA-IGKLINLCYLNLSNTRIGQL---PTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQ   77 (325)
Q Consensus         2 ~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~l~~~~l~~l---p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~   77 (325)
                      ++|++|++++| .++.+|.. ++++++|++|++++|.++.+   +..+..+++|++|++++|.+ ..+|.. +..+++|+
T Consensus        28 ~~l~~L~L~~n-~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i-~~l~~~-~~~l~~L~  104 (306)
T 2z66_A           28 SSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGV-ITMSSN-FLGLEQLE  104 (306)
T ss_dssp             TTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSE-EEEEEE-EETCTTCC
T ss_pred             CCCCEEECCCC-ccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcc-ccChhh-cCCCCCCC
Confidence            57999999999 88888755 78999999999999988644   67788899999999999654 457766 88999999


Q ss_pred             EEEecccceeeeeeccCccc-hhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeec--ccc-cccCC
Q 048462           78 VFSWFSTELVELHYVDSTSV-LAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFL--LPL-DLRMD  153 (325)
Q Consensus        78 ~L~l~~~~~~~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--l~~-l~~l~  153 (325)
                      +|++++|.+       .... ...+..+++|+.|++++|........  ......+|+.|+++++....  +|. +..++
T Consensus       105 ~L~l~~n~l-------~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~  175 (306)
T 2z66_A          105 HLDFQHSNL-------KQMSEFSVFLSLRNLIYLDISHTHTRVAFNG--IFNGLSSLEVLKMAGNSFQENFLPDIFTELR  175 (306)
T ss_dssp             EEECTTSEE-------ESSTTTTTTTTCTTCCEEECTTSCCEECSTT--TTTTCTTCCEEECTTCEEGGGEECSCCTTCT
T ss_pred             EEECCCCcc-------cccccchhhhhccCCCEEECCCCcCCccchh--hcccCcCCCEEECCCCccccccchhHHhhCc
Confidence            999999987       2222 25688899999999999876543221  11223469999999766543  555 88999


Q ss_pred             CCCeEEEcCCCCceeccccCCCCCccccccccccEEEecCCCCCCccc--cccCCCCccEEEEeccCCchhhcccCCCCC
Q 048462          154 HLETLEIDRCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDLK--WIRYAPNLQFLYVSYCPRLSEIIGTYESPG  231 (325)
Q Consensus       154 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~--~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~  231 (325)
                      +|++|++++|...+..     +..+  ..+++|++|+++++ .++.++  .+..+++|++|++++|.......       
T Consensus       176 ~L~~L~Ls~n~l~~~~-----~~~~--~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-------  240 (306)
T 2z66_A          176 NLTFLDLSQCQLEQLS-----PTAF--NSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK-------  240 (306)
T ss_dssp             TCCEEECTTSCCCEEC-----TTTT--TTCTTCCEEECTTS-CCSBCCSGGGTTCTTCCEEECTTSCCCBCSS-------
T ss_pred             CCCEEECCCCCcCCcC-----HHHh--cCCCCCCEEECCCC-ccCccChhhccCcccCCEeECCCCCCcccCH-------
Confidence            9999999999865321     1112  46789999999999 787765  46678999999999996433222       


Q ss_pred             CCccccccccCC-cccEEeccCCC
Q 048462          232 TSEIEESQDFFS-NLMVIDLRHLP  254 (325)
Q Consensus       232 ~~~~~~~~~~~~-~L~~L~l~~~~  254 (325)
                           ..+..++ +|++|++.+++
T Consensus       241 -----~~~~~~~~~L~~L~L~~N~  259 (306)
T 2z66_A          241 -----QELQHFPSSLAFLNLTQND  259 (306)
T ss_dssp             -----SSCCCCCTTCCEEECTTCC
T ss_pred             -----HHHHhhhccCCEEEccCCC
Confidence                 3566674 89999999974

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.83  E-value=4.6e-20  Score=161.03  Aligned_cols=232  Identities=16%  Similarity=0.116  Sum_probs=162.6

Q ss_pred             cEEecCCCCCCCcCc-hhhhCcccCceecCCCCcccccC-hhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEec
Q 048462            5 AVLDLSYNLDLVKLP-EAIGKLINLCYLNLSNTRIGQLP-TGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWF   82 (325)
Q Consensus         5 ~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~l~~lp-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~   82 (325)
                      +..+++.+ .+...+ ..+..+++|++|++++|.++.++ ..+.++++|++|++++|.+.... .  +..+++|++|+++
T Consensus        13 ~i~~ls~~-~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~--~~~l~~L~~L~Ls   88 (317)
T 3o53_A           13 KIEKVTDS-SLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL-D--LESLSTLRTLDLN   88 (317)
T ss_dssp             EEESCCTT-THHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEE-E--ETTCTTCCEEECC
T ss_pred             eEeecccc-chhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcch-h--hhhcCCCCEEECc
Confidence            34455555 343332 33455678888888888887665 46788888888888886655433 3  6788888888888


Q ss_pred             ccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccc--cccCCCCCeEEE
Q 048462           83 STELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPL--DLRMDHLETLEI  160 (325)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~--l~~l~~L~~L~l  160 (325)
                      +|.+       .     .+...++|+.|++++|....+....     ..+|+.|+++++....++.  +..+++|++|++
T Consensus        89 ~n~l-------~-----~l~~~~~L~~L~l~~n~l~~~~~~~-----~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L  151 (317)
T 3o53_A           89 NNYV-------Q-----ELLVGPSIETLHAANNNISRVSCSR-----GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDL  151 (317)
T ss_dssp             SSEE-------E-----EEEECTTCCEEECCSSCCSEEEECC-----CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEEC
T ss_pred             CCcc-------c-----cccCCCCcCEEECCCCccCCcCccc-----cCCCCEEECCCCCCCCccchhhhccCCCCEEEC
Confidence            8876       1     1224478888888888776653221     2358888888766655543  677888999999


Q ss_pred             cCCCCceeccccCCCCCccccccccccEEEecCCCCCCccccccCCCCccEEEEeccCCchhhcccCCCCCCCccccccc
Q 048462          161 DRCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDLKWIRYAPNLQFLYVSYCPRLSEIIGTYESPGTSEIEESQD  240 (325)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~  240 (325)
                      ++|.......     ..+. ..+++|++|+++++ .++.++....+++|++|++++|.. +.+.            ..+.
T Consensus       152 s~N~l~~~~~-----~~~~-~~l~~L~~L~L~~N-~l~~~~~~~~l~~L~~L~Ls~N~l-~~l~------------~~~~  211 (317)
T 3o53_A          152 KLNEIDTVNF-----AELA-ASSDTLEHLNLQYN-FIYDVKGQVVFAKLKTLDLSSNKL-AFMG------------PEFQ  211 (317)
T ss_dssp             TTSCCCEEEG-----GGGG-GGTTTCCEEECTTS-CCCEEECCCCCTTCCEEECCSSCC-CEEC------------GGGG
T ss_pred             CCCCCCcccH-----HHHh-hccCcCCEEECCCC-cCcccccccccccCCEEECCCCcC-Ccch------------hhhc
Confidence            8887643221     1110 34678999999888 788777766788899999988853 3332            2566


Q ss_pred             cCCcccEEeccCCCCcceeccCcccCCCccEEeeeCCC
Q 048462          241 FFSNLMVIDLRHLPSLTSICCGVVPFPSLQTISVNGCP  278 (325)
Q Consensus       241 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~  278 (325)
                      .+++|+.|++++| .++.++.....+++|+.|++++++
T Consensus       212 ~l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N~  248 (317)
T 3o53_A          212 SAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNG  248 (317)
T ss_dssp             GGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCC
T ss_pred             ccCcccEEECcCC-cccchhhHhhcCCCCCEEEccCCC
Confidence            7888999999887 677787777778889999998873

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.82  E-value=2.6e-19  Score=172.07  Aligned_cols=250  Identities=22%  Similarity=0.227  Sum_probs=131.9

Q ss_pred             CCCcEEecCCCCCCCcC-chhhhCcccCceecCCCCcc--cccChh-hhc--cccCceeeccCCCCCeeechhhhhCCCc
Q 048462            2 HALAVLDLSYNLDLVKL-PEAIGKLINLCYLNLSNTRI--GQLPTG-ITY--LKNLKILRLDGMRYLAFVPCQVISSLSS   75 (325)
Q Consensus         2 ~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~l~~~~l--~~lp~~-l~~--l~~L~~L~l~~~~~~~~~~~~~~~~l~~   75 (325)
                      ++|++|++++| .++.+ +..+..+++|++|++++|.+  ..++.. +..  .++|+.|++++|.+....|.. +..+++
T Consensus       329 ~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~-~~~l~~  406 (680)
T 1ziw_A          329 KCLEHLNMEDN-DIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDA-FSWLGH  406 (680)
T ss_dssp             TTCCEEECCSC-CBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTT-TTTCTT
T ss_pred             CCCCEEECCCC-ccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhh-hhCCCC
Confidence            44555555555 44444 33455555666666555532  222221 111  235555555555555444555 778888


Q ss_pred             ccEEEecccceeeeeeccCccch-hhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeee---cccc-cc
Q 048462           76 LQVFSWFSTELVELHYVDSTSVL-AELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASF---LLPL-DL  150 (325)
Q Consensus        76 L~~L~l~~~~~~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~---~l~~-l~  150 (325)
                      |+.|++++|.+       ....+ ..+..+++|+.|++++|.........  ......|+.|+++++...   .+|. +.
T Consensus       407 L~~L~L~~N~l-------~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~~~~~L~~L~l~~n~l~~~~~~p~~~~  477 (680)
T 1ziw_A          407 LEVLDLGLNEI-------GQELTGQEWRGLENIFEIYLSYNKYLQLTRNS--FALVPSLQRLMLRRVALKNVDSSPSPFQ  477 (680)
T ss_dssp             CCEEECCSSCC-------EEECCSGGGTTCTTCCEEECCSCSEEECCTTT--TTTCTTCCEEECTTSCCBCTTCSSCTTT
T ss_pred             CCEEeCCCCcC-------ccccCcccccCcccccEEecCCCCcceeChhh--hhcCcccccchhccccccccccCCcccc
Confidence            88888888876       22222 45677788888888777654432211  112234666666644322   2333 56


Q ss_pred             cCCCCCeEEEcCCCCceeccccCCCCCccccccccccEEEecCCCCCCccc----------cccCCCCccEEEEeccCCc
Q 048462          151 RMDHLETLEIDRCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDLK----------WIRYAPNLQFLYVSYCPRL  220 (325)
Q Consensus       151 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~----------~~~~~~~L~~L~l~~~~~l  220 (325)
                      .+++|+.|++++|......     +..+  ..+++|++|+++++ .++.+.          .+..+++|++|++++|.. 
T Consensus       478 ~l~~L~~L~Ls~N~l~~i~-----~~~~--~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l-  548 (680)
T 1ziw_A          478 PLRNLTILDLSNNNIANIN-----DDML--EGLEKLEILDLQHN-NLARLWKHANPGGPIYFLKGLSHLHILNLESNGF-  548 (680)
T ss_dssp             TCTTCCEEECCSSCCCCCC-----TTTT--TTCTTCCEEECCSS-CCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCC-
T ss_pred             cCCCCCEEECCCCCCCcCC-----hhhh--ccccccCEEeCCCC-CccccchhhccCCcchhhcCCCCCCEEECCCCCC-
Confidence            6667777777666543111     0111  34566666666666 454431          134556666666666642 


Q ss_pred             hhhcccCCCCCCCccccccccCCcccEEeccCCCCcceeccCc-ccCCCccEEeeeCCCCCCCCC
Q 048462          221 SEIIGTYESPGTSEIEESQDFFSNLMVIDLRHLPSLTSICCGV-VPFPSLQTISVNGCPSLRKLP  284 (325)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~~L~~L~l~~c~~l~~ip  284 (325)
                      +.+..           ..+..+++|+.|+++++ .++.++... ..+++|+.|++++| +++.+|
T Consensus       549 ~~i~~-----------~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~  600 (680)
T 1ziw_A          549 DEIPV-----------EVFKDLFELKIIDLGLN-NLNTLPASVFNNQVSLKSLNLQKN-LITSVE  600 (680)
T ss_dssp             CCCCT-----------TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECTTS-CCCBCC
T ss_pred             CCCCH-----------HHcccccCcceeECCCC-CCCcCCHhHhCCCCCCCEEECCCC-cCCccC
Confidence            22221           23455666666666654 455554432 23566666666655 555554

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.82  E-value=5.3e-20  Score=158.17  Aligned_cols=217  Identities=17%  Similarity=0.159  Sum_probs=138.8

Q ss_pred             cEEecCCCCCCCcCchhhhCcccCceecCCCCcccccCh-hhhccccCceeeccCCCCCeeechhhhhCCCcccEEEecc
Q 048462            5 AVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPT-GITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWFS   83 (325)
Q Consensus         5 ~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~   83 (325)
                      +.++.+++ .++.+|..+  .++|++|+++++.++.++. .+.++++|++|++++|.+....+.. +..+++|++|++++
T Consensus        14 ~~~~c~~~-~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~   89 (285)
T 1ozn_A           14 VTTSCPQQ-GLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAA-FTGLALLEQLDLSD   89 (285)
T ss_dssp             CEEECCSS-CCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTT-TTTCTTCCEEECCS
T ss_pred             eEEEcCcC-CcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhh-cCCccCCCEEeCCC
Confidence            45666666 677776543  3577777777777766653 4677777777777776555444555 77777777777777


Q ss_pred             cc-eeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccc--cccCCCCCeEEE
Q 048462           84 TE-LVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPL--DLRMDHLETLEI  160 (325)
Q Consensus        84 ~~-~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~--l~~l~~L~~L~l  160 (325)
                      |. +       ....+..+..+++|+.|++++|....+...  ......+|+.|+++++....++.  +..+++|++|++
T Consensus        90 n~~l-------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  160 (285)
T 1ozn_A           90 NAQL-------RSVDPATFHGLGRLHTLHLDRCGLQELGPG--LFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFL  160 (285)
T ss_dssp             CTTC-------CCCCTTTTTTCTTCCEEECTTSCCCCCCTT--TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCc-------cccCHHHhcCCcCCCEEECCCCcCCEECHh--HhhCCcCCCEEECCCCcccccCHhHhccCCCccEEEC
Confidence            75 4       333355667777777777777765544221  11122357777777655554444  677888888888


Q ss_pred             cCCCCceeccccCCCCCccccccccccEEEecCCCCCCcc--ccccCCCCccEEEEeccCCchhhcccCCCCCCCccccc
Q 048462          161 DRCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDL--KWIRYAPNLQFLYVSYCPRLSEIIGTYESPGTSEIEES  238 (325)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l--~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~  238 (325)
                      ++|......     ...+  ..+++|++|+++++ .++.+  ..+..+++|++|++++|.. +.+..           ..
T Consensus       161 ~~n~l~~~~-----~~~~--~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~-----------~~  220 (285)
T 1ozn_A          161 HGNRISSVP-----ERAF--RGLHSLDRLLLHQN-RVAHVHPHAFRDLGRLMTLYLFANNL-SALPT-----------EA  220 (285)
T ss_dssp             CSSCCCEEC-----TTTT--TTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCC-SCCCH-----------HH
T ss_pred             CCCcccccC-----HHHh--cCccccCEEECCCC-cccccCHhHccCcccccEeeCCCCcC-CcCCH-----------HH
Confidence            887654221     1111  34678888888887 56664  3456678888888888753 22221           24


Q ss_pred             cccCCcccEEeccCCC
Q 048462          239 QDFFSNLMVIDLRHLP  254 (325)
Q Consensus       239 ~~~~~~L~~L~l~~~~  254 (325)
                      +..+++|+.|++.+++
T Consensus       221 ~~~l~~L~~L~l~~N~  236 (285)
T 1ozn_A          221 LAPLRALQYLRLNDNP  236 (285)
T ss_dssp             HTTCTTCCEEECCSSC
T ss_pred             cccCcccCEEeccCCC
Confidence            6677888888888764

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.81  E-value=3.3e-19  Score=154.89  Aligned_cols=188  Identities=19%  Similarity=0.234  Sum_probs=128.4

Q ss_pred             CCCcEEecCCCCCCCcCchhhhCcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEe
Q 048462            2 HALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSW   81 (325)
Q Consensus         2 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l   81 (325)
                      ++|++|++++| .++.+| .+..+++|++|++++|.++.++. +.++++|++|++++|.+. .++.  +..+++|++|++
T Consensus        41 ~~L~~L~l~~~-~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~-~~~~--~~~l~~L~~L~l  114 (308)
T 1h6u_A           41 DGITTLSAFGT-GVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLK-NVSA--IAGLQSIKTLDL  114 (308)
T ss_dssp             HTCCEEECTTS-CCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCS-CCGG--GTTCTTCCEEEC
T ss_pred             CCcCEEEeeCC-CccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCC-Cchh--hcCCCCCCEEEC
Confidence            56888888888 777776 57788888888888888877776 788888888888886543 3443  788888888888


Q ss_pred             cccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccccccCCCCCeEEEc
Q 048462           82 FSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPLDLRMDHLETLEID  161 (325)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~l~~L~~L~l~  161 (325)
                      ++|.+       .. . ..+..+++|+.|++++|....++.+.    ...+|+.|+++++....++.+..+++|+.|+++
T Consensus       115 ~~n~l-------~~-~-~~l~~l~~L~~L~l~~n~l~~~~~l~----~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~  181 (308)
T 1h6u_A          115 TSTQI-------TD-V-TPLAGLSNLQVLYLDLNQITNISPLA----GLTNLQYLSIGNAQVSDLTPLANLSKLTTLKAD  181 (308)
T ss_dssp             TTSCC-------CC-C-GGGTTCTTCCEEECCSSCCCCCGGGG----GCTTCCEEECCSSCCCCCGGGTTCTTCCEEECC
T ss_pred             CCCCC-------CC-c-hhhcCCCCCCEEECCCCccCcCcccc----CCCCccEEEccCCcCCCChhhcCCCCCCEEECC
Confidence            88877       22 2 23777888888888888766554422    123467777766555555556666777777777


Q ss_pred             CCCCceeccccCCCCCccccccccccEEEecCCCCCCccccccCCCCccEEEEeccC
Q 048462          162 RCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDLKWIRYAPNLQFLYVSYCP  218 (325)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~  218 (325)
                      +|...+         ..+...+++|++|++++| .+++++.+..+++|+.|++++|+
T Consensus       182 ~n~l~~---------~~~l~~l~~L~~L~L~~N-~l~~~~~l~~l~~L~~L~l~~N~  228 (308)
T 1h6u_A          182 DNKISD---------ISPLASLPNLIEVHLKNN-QISDVSPLANTSNLFIVTLTNQT  228 (308)
T ss_dssp             SSCCCC---------CGGGGGCTTCCEEECTTS-CCCBCGGGTTCTTCCEEEEEEEE
T ss_pred             CCccCc---------ChhhcCCCCCCEEEccCC-ccCccccccCCCCCCEEEccCCe
Confidence            666431         111245666777777766 56666556666777777776665

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.81  E-value=5.8e-19  Score=151.64  Aligned_cols=217  Identities=15%  Similarity=0.133  Sum_probs=161.9

Q ss_pred             ceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEecccceeeeeeccCccchhhhccCCCcc
Q 048462           29 CYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLAELESLENIH  108 (325)
Q Consensus        29 ~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~  108 (325)
                      ++++.+++.++.+|..+  .++|++|++++|.+....+.. +..+++|++|++++|.+       ....+..+..+++|+
T Consensus        14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~-~~~~~~L~~L~l~~n~l-------~~~~~~~~~~l~~L~   83 (285)
T 1ozn_A           14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAAS-FRACRNLTILWLHSNVL-------ARIDAAAFTGLALLE   83 (285)
T ss_dssp             CEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTT-TTTCTTCCEEECCSSCC-------CEECTTTTTTCTTCC
T ss_pred             eEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHH-cccCCCCCEEECCCCcc-------ceeCHhhcCCccCCC
Confidence            57888888888898754  579999999997665544445 89999999999999987       455577888999999


Q ss_pred             eEEEEecC-cccccccccCccccCCceEEEEceeeeecccc--cccCCCCCeEEEcCCCCceeccccCCCCCcccccccc
Q 048462          109 DISVTLCN-VDAVNRVKSSPKLQSCIKRLAVVLMASFLLPL--DLRMDHLETLEIDRCSLESKNDYFGDQGRTRTYCFRN  185 (325)
Q Consensus       109 ~L~l~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~--l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~  185 (325)
                      .|++++|. ...+...  ......+|+.|+++++....++.  +..+++|++|++++|......     ...+  ..+++
T Consensus        84 ~L~l~~n~~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-----~~~~--~~l~~  154 (285)
T 1ozn_A           84 QLDLSDNAQLRSVDPA--TFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALP-----DDTF--RDLGN  154 (285)
T ss_dssp             EEECCSCTTCCCCCTT--TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-----TTTT--TTCTT
T ss_pred             EEeCCCCCCccccCHH--HhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccC-----HhHh--ccCCC
Confidence            99999996 5544211  11223468999999766655543  788999999999998764221     1111  45789


Q ss_pred             ccEEEecCCCCCCcccc--ccCCCCccEEEEeccCCchhhcccCCCCCCCccccccccCCcccEEeccCCCCcceeccC-
Q 048462          186 LRHLSVKTCPCMTDLKW--IRYAPNLQFLYVSYCPRLSEIIGTYESPGTSEIEESQDFFSNLMVIDLRHLPSLTSICCG-  262 (325)
Q Consensus       186 L~~L~l~~~~~l~~l~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-  262 (325)
                      |++|+++++ +++.++.  +..+++|++|++++|.. ..+.           +..+..+++|+.|++++| .+..++.. 
T Consensus       155 L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~-----------~~~~~~l~~L~~L~l~~n-~l~~~~~~~  220 (285)
T 1ozn_A          155 LTHLFLHGN-RISSVPERAFRGLHSLDRLLLHQNRV-AHVH-----------PHAFRDLGRLMTLYLFAN-NLSALPTEA  220 (285)
T ss_dssp             CCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCC-CEEC-----------TTTTTTCTTCCEEECCSS-CCSCCCHHH
T ss_pred             ccEEECCCC-cccccCHHHhcCccccCEEECCCCcc-cccC-----------HhHccCcccccEeeCCCC-cCCcCCHHH
Confidence            999999998 7887653  67789999999999863 3222           246778899999999997 56655533 


Q ss_pred             cccCCCccEEeeeCCC
Q 048462          263 VVPFPSLQTISVNGCP  278 (325)
Q Consensus       263 ~~~~~~L~~L~l~~c~  278 (325)
                      ...+++|+.|++++++
T Consensus       221 ~~~l~~L~~L~l~~N~  236 (285)
T 1ozn_A          221 LAPLRALQYLRLNDNP  236 (285)
T ss_dssp             HTTCTTCCEEECCSSC
T ss_pred             cccCcccCEEeccCCC
Confidence            4568899999998873

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.80  E-value=1.5e-19  Score=165.34  Aligned_cols=242  Identities=15%  Similarity=0.125  Sum_probs=153.8

Q ss_pred             CCCcEEecCCCCCCCcCchhhhCcccCceecCCCCcc-cccChhhhccccC-------------ceeeccCCCCCeeech
Q 048462            2 HALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRI-GQLPTGITYLKNL-------------KILRLDGMRYLAFVPC   67 (325)
Q Consensus         2 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l-~~lp~~l~~l~~L-------------~~L~l~~~~~~~~~~~   67 (325)
                      .+|++|++++| .++.+|+.++++++|++|++++|.+ +.+|..++++.+|             ++|++++|.. ..+|.
T Consensus        11 ~~L~~L~l~~n-~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l-~~lp~   88 (454)
T 1jl5_A           11 TFLQEPLRHSS-NLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGL-SSLPE   88 (454)
T ss_dssp             ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCC-SCCCS
T ss_pred             ccchhhhcccC-chhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcc-ccCCC
Confidence            57899999999 7899999999999999999999987 4889988888875             9999999654 44554


Q ss_pred             hhhhCCCcccEEEecccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeeccc
Q 048462           68 QVISSLSSLQVFSWFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLP  147 (325)
Q Consensus        68 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~  147 (325)
                      .    .++|++|++++|.+       .. ++.   ..++|+.|++++|....++..      ..+|++|+++++....+|
T Consensus        89 ~----~~~L~~L~l~~n~l-------~~-lp~---~~~~L~~L~l~~n~l~~l~~~------~~~L~~L~L~~n~l~~lp  147 (454)
T 1jl5_A           89 L----PPHLESLVASCNSL-------TE-LPE---LPQSLKSLLVDNNNLKALSDL------PPLLEYLGVSNNQLEKLP  147 (454)
T ss_dssp             C----CTTCSEEECCSSCC-------SS-CCC---CCTTCCEEECCSSCCSCCCSC------CTTCCEEECCSSCCSSCC
T ss_pred             C----cCCCCEEEccCCcC-------Cc-ccc---ccCCCcEEECCCCccCcccCC------CCCCCEEECcCCCCCCCc
Confidence            2    47899999999987       22 332   247899999999887765433      246899999987777788


Q ss_pred             ccccCCCCCeEEEcCCCCceeccccCCCCCccccccccccEEEecCCCCCCccccccCCCCccEEEEeccCCchhhc---
Q 048462          148 LDLRMDHLETLEIDRCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDLKWIRYAPNLQFLYVSYCPRLSEII---  224 (325)
Q Consensus       148 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~---  224 (325)
                      .+..+++|++|++++|....          +| ...++|++|+++++ .++.++.+..+++|++|++++|.. +.+.   
T Consensus       148 ~~~~l~~L~~L~l~~N~l~~----------lp-~~~~~L~~L~L~~n-~l~~l~~~~~l~~L~~L~l~~N~l-~~l~~~~  214 (454)
T 1jl5_A          148 ELQNSSFLKIIDVDNNSLKK----------LP-DLPPSLEFIAAGNN-QLEELPELQNLPFLTAIYADNNSL-KKLPDLP  214 (454)
T ss_dssp             CCTTCTTCCEEECCSSCCSC----------CC-CCCTTCCEEECCSS-CCSSCCCCTTCTTCCEEECCSSCC-SSCCCCC
T ss_pred             ccCCCCCCCEEECCCCcCcc----------cC-CCcccccEEECcCC-cCCcCccccCCCCCCEEECCCCcC-CcCCCCc
Confidence            89999999999999987642          22 12358888888888 777777777888888888888753 2211   


Q ss_pred             -------ccCCCCCCCccccccccCCcccEEeccCCCCcceeccCcccCCCccEEeeeCCCCCCCCCCCC
Q 048462          225 -------GTYESPGTSEIEESQDFFSNLMVIDLRHLPSLTSICCGVVPFPSLQTISVNGCPSLRKLPLNS  287 (325)
Q Consensus       225 -------~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~ip~~~  287 (325)
                             ...+  ....++ .++.+++|++|++++| .+..++.   .+++|+.|++++| .++.+|...
T Consensus       215 ~~L~~L~l~~n--~l~~lp-~~~~l~~L~~L~l~~N-~l~~l~~---~~~~L~~L~l~~N-~l~~l~~~~  276 (454)
T 1jl5_A          215 LSLESIVAGNN--ILEELP-ELQNLPFLTTIYADNN-LLKTLPD---LPPSLEALNVRDN-YLTDLPELP  276 (454)
T ss_dssp             TTCCEEECCSS--CCSSCC-CCTTCTTCCEEECCSS-CCSSCCS---CCTTCCEEECCSS-CCSCCCCCC
T ss_pred             CcccEEECcCC--cCCccc-ccCCCCCCCEEECCCC-cCCcccc---cccccCEEECCCC-cccccCccc
Confidence                   1111  111233 3556777777777775 4444443   2367777777766 566666543

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.80  E-value=8.9e-19  Score=161.61  Aligned_cols=221  Identities=17%  Similarity=0.150  Sum_probs=155.1

Q ss_pred             cCchhhhCcc----cCceecCCCCcccccC-hhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEecccceeeeee
Q 048462           17 KLPEAIGKLI----NLCYLNLSNTRIGQLP-TGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWFSTELVELHY   91 (325)
Q Consensus        17 ~lp~~~~~l~----~L~~L~l~~~~l~~lp-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~   91 (325)
                      .+|..+..+.    +|++|++++|.++.++ ..+.++++|++|++++|.+.+..|   +..+++|++|++++|.+     
T Consensus        21 ~l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l-----   92 (487)
T 3oja_A           21 SLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYV-----   92 (487)
T ss_dssp             THHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE---CTTCTTCCEEECCSSEE-----
T ss_pred             hhHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc---cccCCCCCEEEecCCcC-----
Confidence            4555555543    7888888888886554 467888888888888866554433   67788888888888876     


Q ss_pred             ccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccc--cccCCCCCeEEEcCCCCceec
Q 048462           92 VDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPL--DLRMDHLETLEIDRCSLESKN  169 (325)
Q Consensus        92 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~--l~~l~~L~~L~l~~~~~~~~~  169 (325)
                        . .    +...++|+.|++++|....+....     ..+|+.|+++++....++.  +..+++|+.|++++|......
T Consensus        93 --~-~----l~~~~~L~~L~L~~N~l~~~~~~~-----l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  160 (487)
T 3oja_A           93 --Q-E----LLVGPSIETLHAANNNISRVSCSR-----GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN  160 (487)
T ss_dssp             --E-E----EEECTTCCEEECCSSCCCCEEECC-----CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEE
T ss_pred             --C-C----CCCCCCcCEEECcCCcCCCCCccc-----cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcC
Confidence              1 1    223478888888888776654321     2357888888666554433  677888888998888764221


Q ss_pred             cccCCCCCccccccccccEEEecCCCCCCccccccCCCCccEEEEeccCCchhhcccCCCCCCCccccccccCCcccEEe
Q 048462          170 DYFGDQGRTRTYCFRNLRHLSVKTCPCMTDLKWIRYAPNLQFLYVSYCPRLSEIIGTYESPGTSEIEESQDFFSNLMVID  249 (325)
Q Consensus       170 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~  249 (325)
                           +..+. ..+++|++|++++| .++.++....+++|++|++++|.. +.+.            ..+..+++|+.|+
T Consensus       161 -----~~~l~-~~l~~L~~L~Ls~N-~l~~~~~~~~l~~L~~L~Ls~N~l-~~~~------------~~~~~l~~L~~L~  220 (487)
T 3oja_A          161 -----FAELA-ASSDTLEHLNLQYN-FIYDVKGQVVFAKLKTLDLSSNKL-AFMG------------PEFQSAAGVTWIS  220 (487)
T ss_dssp             -----GGGGG-GGTTTCCEEECTTS-CCCEEECCCCCTTCCEEECCSSCC-CEEC------------GGGGGGTTCSEEE
T ss_pred             -----hHHHh-hhCCcccEEecCCC-ccccccccccCCCCCEEECCCCCC-CCCC------------HhHcCCCCccEEE
Confidence                 11111 25688889999888 788777777788899998888853 3332            3567788888999


Q ss_pred             ccCCCCcceeccCcccCCCccEEeeeCCC
Q 048462          250 LRHLPSLTSICCGVVPFPSLQTISVNGCP  278 (325)
Q Consensus       250 l~~~~~l~~~~~~~~~~~~L~~L~l~~c~  278 (325)
                      +++| .+..++.....+++|+.|++++|+
T Consensus       221 Ls~N-~l~~lp~~l~~l~~L~~L~l~~N~  248 (487)
T 3oja_A          221 LRNN-KLVLIEKALRFSQNLEHFDLRGNG  248 (487)
T ss_dssp             CTTS-CCCEECTTCCCCTTCCEEECTTCC
T ss_pred             ecCC-cCcccchhhccCCCCCEEEcCCCC
Confidence            8886 677777777778888888888874

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.80  E-value=3.4e-20  Score=161.89  Aligned_cols=240  Identities=17%  Similarity=0.127  Sum_probs=180.5

Q ss_pred             CCCcEEecCCCCCCCcCc-hhhhCcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEE
Q 048462            2 HALAVLDLSYNLDLVKLP-EAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFS   80 (325)
Q Consensus         2 ~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~   80 (325)
                      ++|++|++++| .++.++ ..+..+++|++|++++|.+..++. +..+++|++|++++|.+. .     +...++|++|+
T Consensus        34 ~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~-~-----l~~~~~L~~L~  105 (317)
T 3o53_A           34 WNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQ-E-----LLVGPSIETLH  105 (317)
T ss_dssp             GGCSEEECTTS-CCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEE-E-----EEECTTCCEEE
T ss_pred             CCCCEEECcCC-ccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccc-c-----ccCCCCcCEEE
Confidence            58999999999 788774 789999999999999999976665 899999999999997543 3     33458999999


Q ss_pred             ecccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecc--ccc-ccCCCCCe
Q 048462           81 WFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLL--PLD-LRMDHLET  157 (325)
Q Consensus        81 l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l--~~l-~~l~~L~~  157 (325)
                      +++|.+       .....   ..+++|+.|++++|....+.....  .....|+.|+++++....+  ..+ ..+++|++
T Consensus       106 l~~n~l-------~~~~~---~~~~~L~~L~l~~N~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~  173 (317)
T 3o53_A          106 AANNNI-------SRVSC---SRGQGKKNIYLANNKITMLRDLDE--GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH  173 (317)
T ss_dssp             CCSSCC-------SEEEE---CCCSSCEEEECCSSCCCSGGGBCT--GGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCE
T ss_pred             CCCCcc-------CCcCc---cccCCCCEEECCCCCCCCccchhh--hccCCCCEEECCCCCCCcccHHHHhhccCcCCE
Confidence            999987       22222   236889999999998876543221  2235699999996654433  334 47899999


Q ss_pred             EEEcCCCCceeccccCCCCCccccccccccEEEecCCCCCCccc-cccCCCCccEEEEeccCCchhhcccCCCCCCCccc
Q 048462          158 LEIDRCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDLK-WIRYAPNLQFLYVSYCPRLSEIIGTYESPGTSEIE  236 (325)
Q Consensus       158 L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~  236 (325)
                      |++++|......         ....+++|++|+++++ .++.++ .+..+++|++|++++|. ++.+.            
T Consensus       174 L~L~~N~l~~~~---------~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~L~~N~-l~~l~------------  230 (317)
T 3o53_A          174 LNLQYNFIYDVK---------GQVVFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNNK-LVLIE------------  230 (317)
T ss_dssp             EECTTSCCCEEE---------CCCCCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTSC-CCEEC------------
T ss_pred             EECCCCcCcccc---------cccccccCCEEECCCC-cCCcchhhhcccCcccEEECcCCc-ccchh------------
Confidence            999999875321         1134789999999999 788763 56678999999999996 33333            


Q ss_pred             cccccCCcccEEeccCCCCc-ceeccCcccCCCccEEeeeCCCCCCCCC
Q 048462          237 ESQDFFSNLMVIDLRHLPSL-TSICCGVVPFPSLQTISVNGCPSLRKLP  284 (325)
Q Consensus       237 ~~~~~~~~L~~L~l~~~~~l-~~~~~~~~~~~~L~~L~l~~c~~l~~ip  284 (325)
                      ..+..+++|+.|++.+++-. ..++.....+++|+.+++.+++.++..+
T Consensus       231 ~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~  279 (317)
T 3o53_A          231 KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQN  279 (317)
T ss_dssp             TTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSS
T ss_pred             hHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCc
Confidence            36778899999999998544 2444445568889999988776666443

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.79  E-value=3e-18  Score=161.75  Aligned_cols=229  Identities=22%  Similarity=0.205  Sum_probs=120.0

Q ss_pred             CCcEEecCCCCCCCcCchhhhCcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEec
Q 048462            3 ALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWF   82 (325)
Q Consensus         3 ~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~   82 (325)
                      ++++|+++++ .++.+|..+.  ++|++|++++|.++.+|.   .+++|++|++++|.+ ..+|.    .+++|++|+++
T Consensus        41 ~l~~L~ls~n-~L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l-~~lp~----~l~~L~~L~Ls  109 (622)
T 3g06_A           41 GNAVLNVGES-GLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQL-TSLPV----LPPGLLELSIF  109 (622)
T ss_dssp             CCCEEECCSS-CCSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCC-SCCCC----CCTTCCEEEEC
T ss_pred             CCcEEEecCC-CcCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcC-CcCCC----CCCCCCEEECc
Confidence            3567777777 6667666554  577777777777766665   466777777777543 33443    45666677776


Q ss_pred             ccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccc--------------cCccccCCceEEEEceeeeecccc
Q 048462           83 STELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVK--------------SSPKLQSCIKRLAVVLMASFLLPL  148 (325)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--------------~~~~~~~~L~~L~l~~~~~~~l~~  148 (325)
                      +|.+        ..++.   .+++|+.|++.+|....++...              ..+....+|+.|+++++....+| 
T Consensus       110 ~N~l--------~~l~~---~l~~L~~L~L~~N~l~~lp~~l~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~-  177 (622)
T 3g06_A          110 SNPL--------THLPA---LPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLP-  177 (622)
T ss_dssp             SCCC--------CCCCC---CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCC-
T ss_pred             CCcC--------CCCCC---CCCCcCEEECCCCCCCcCCCCCCCCCEEECcCCcCCCcCCccCCCCEEECCCCCCCCCc-
Confidence            6665        11111   3344555555555443332210              00001122344444433333333 


Q ss_pred             cccCCCCCeEEEcCCCCceeccccCCCCCccccccccccEEEecCCCCCCccccccCCCCccEEEEeccCCchhhcccCC
Q 048462          149 DLRMDHLETLEIDRCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDLKWIRYAPNLQFLYVSYCPRLSEIIGTYE  228 (325)
Q Consensus       149 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~  228 (325)
                       ..+++|+.|++++|....          ++ ..+++|+.|++++| .++.++.  .+++|+.|++++|. ++.+     
T Consensus       178 -~~~~~L~~L~Ls~N~l~~----------l~-~~~~~L~~L~L~~N-~l~~l~~--~~~~L~~L~Ls~N~-L~~l-----  236 (622)
T 3g06_A          178 -MLPSGLQELSVSDNQLAS----------LP-TLPSELYKLWAYNN-RLTSLPA--LPSGLKELIVSGNR-LTSL-----  236 (622)
T ss_dssp             -CCCTTCCEEECCSSCCSC----------CC-CCCTTCCEEECCSS-CCSSCCC--CCTTCCEEECCSSC-CSCC-----
T ss_pred             -ccCCCCcEEECCCCCCCC----------CC-CccchhhEEECcCC-cccccCC--CCCCCCEEEccCCc-cCcC-----
Confidence             233556666666655421          11 12345556655555 4554443  23566666666653 2211     


Q ss_pred             CCCCCccccccccCCcccEEeccCCCCcceeccCcccCCCccEEeeeCCCCCCCCCCCCCCc
Q 048462          229 SPGTSEIEESQDFFSNLMVIDLRHLPSLTSICCGVVPFPSLQTISVNGCPSLRKLPLNSGSA  290 (325)
Q Consensus       229 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~ip~~~~~~  290 (325)
                             +   ..+++|+.|++++| .++.++.   .+++|+.|++++| .|+.+|..+..+
T Consensus       237 -------p---~~l~~L~~L~Ls~N-~L~~lp~---~~~~L~~L~Ls~N-~L~~lp~~l~~l  283 (622)
T 3g06_A          237 -------P---VLPSELKELMVSGN-RLTSLPM---LPSGLLSLSVYRN-QLTRLPESLIHL  283 (622)
T ss_dssp             -------C---CCCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSS-CCCSCCGGGGGS
T ss_pred             -------C---CCCCcCcEEECCCC-CCCcCCc---ccccCcEEeCCCC-CCCcCCHHHhhc
Confidence                   1   34566777777765 5555554   3566777777666 666666555444

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.79  E-value=5.9e-20  Score=161.49  Aligned_cols=246  Identities=15%  Similarity=0.153  Sum_probs=173.9

Q ss_pred             CCcEEecCCCCCCCcCchhhhCc--ccCceecCCCCcccccChhhhccccCceeeccCCCCCee-echhhhhCCCcccEE
Q 048462            3 ALAVLDLSYNLDLVKLPEAIGKL--INLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAF-VPCQVISSLSSLQVF   79 (325)
Q Consensus         3 ~L~~L~l~~~~~~~~lp~~~~~l--~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~~l~~L~~L   79 (325)
                      .++.++++++ .+.  +..+..+  +++++|+++++.+...+..+.++++|++|++++|.+... ++.. +..+++|++|
T Consensus        48 ~~~~l~l~~~-~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~-~~~~~~L~~L  123 (336)
T 2ast_B           48 LWQTLDLTGK-NLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGI-LSQCSKLQNL  123 (336)
T ss_dssp             TSSEEECTTC-BCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHH-HTTBCCCSEE
T ss_pred             hheeeccccc-cCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHH-HhhCCCCCEE
Confidence            3678889888 454  5667777  889999999998876666677899999999999875544 6665 8889999999


Q ss_pred             EecccceeeeeeccCccchhhhccCCCcceEEEEecC-cccccccccCccccCCceEEEEcee-eee--cccc-cccCC-
Q 048462           80 SWFSTELVELHYVDSTSVLAELESLENIHDISVTLCN-VDAVNRVKSSPKLQSCIKRLAVVLM-ASF--LLPL-DLRMD-  153 (325)
Q Consensus        80 ~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~-~~~--~l~~-l~~l~-  153 (325)
                      ++++|.+       ....+..+..+++|++|++++|. ... ..+........+|++|+++++ ...  .++. +..++ 
T Consensus       124 ~L~~~~l-------~~~~~~~l~~~~~L~~L~L~~~~~l~~-~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~  195 (336)
T 2ast_B          124 SLEGLRL-------SDPIVNTLAKNSNLVRLNLSGCSGFSE-FALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSE  195 (336)
T ss_dssp             ECTTCBC-------CHHHHHHHTTCTTCSEEECTTCBSCCH-HHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCT
T ss_pred             eCcCccc-------CHHHHHHHhcCCCCCEEECCCCCCCCH-HHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhccc
Confidence            9999887       55677788889999999998884 332 122222223456899999877 332  2455 77889 


Q ss_pred             CCCeEEEcCCCC-ceeccccCCCCCccc--cccccccEEEecCCCCCCc--cccccCCCCccEEEEeccCCchhhcccCC
Q 048462          154 HLETLEIDRCSL-ESKNDYFGDQGRTRT--YCFRNLRHLSVKTCPCMTD--LKWIRYAPNLQFLYVSYCPRLSEIIGTYE  228 (325)
Q Consensus       154 ~L~~L~l~~~~~-~~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~l~~--l~~~~~~~~L~~L~l~~~~~l~~~~~~~~  228 (325)
                      +|++|++++|.. ..       ...++.  ..+++|++|++++|..+++  +..+..+++|++|++++|..+.....   
T Consensus       196 ~L~~L~l~~~~~~~~-------~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~---  265 (336)
T 2ast_B          196 TITQLNLSGYRKNLQ-------KSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETL---  265 (336)
T ss_dssp             TCCEEECCSCGGGSC-------HHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGG---
T ss_pred             CCCEEEeCCCcccCC-------HHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHH---
Confidence            999999999952 21       011222  4689999999999954654  55677899999999999974433221   


Q ss_pred             CCCCCccccccccCCcccEEeccCCCCcceeccC-cccC-CCccEEeeeCCCCCCCCC
Q 048462          229 SPGTSEIEESQDFFSNLMVIDLRHLPSLTSICCG-VVPF-PSLQTISVNGCPSLRKLP  284 (325)
Q Consensus       229 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~-~~L~~L~l~~c~~l~~ip  284 (325)
                              ..+..+++|+.|++.+|  +   +.. ...+ ..|+.|++. |+.++.+.
T Consensus       266 --------~~l~~~~~L~~L~l~~~--i---~~~~~~~l~~~l~~L~l~-~n~l~~~~  309 (336)
T 2ast_B          266 --------LELGEIPTLKTLQVFGI--V---PDGTLQLLKEALPHLQIN-CSHFTTIA  309 (336)
T ss_dssp             --------GGGGGCTTCCEEECTTS--S---CTTCHHHHHHHSTTSEES-CCCSCCTT
T ss_pred             --------HHHhcCCCCCEEeccCc--c---CHHHHHHHHhhCcceEEe-cccCcccc
Confidence                    25678999999999998  2   221 1112 235666674 55777643

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.79  E-value=5.7e-20  Score=160.07  Aligned_cols=246  Identities=17%  Similarity=0.109  Sum_probs=149.8

Q ss_pred             hhCcccCceecCCCCcccccChhhhccccCceeeccCCCC-Ceeechhhhh-------CCCcccEEEecccceeeeeecc
Q 048462           22 IGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRY-LAFVPCQVIS-------SLSSLQVFSWFSTELVELHYVD   93 (325)
Q Consensus        22 ~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~-~~~~~~~~~~-------~l~~L~~L~l~~~~~~~~~~~~   93 (325)
                      ++.+++|++|+++++.+ .+|..+...  |+.|+++++.+ ...+|.. +.       ++++|++|++++|.+       
T Consensus        39 ~~~~~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~-~~~~~~~~~~l~~L~~L~L~~n~l-------  107 (312)
T 1wwl_A           39 YGGGRSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSR-ILFGALRVLGISGLQELTLENLEV-------  107 (312)
T ss_dssp             EEEEEECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHH-HHHHHHHHHTTSCCCEEEEEEEBC-------
T ss_pred             EccCCCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHH-HHHHHHHhcCcCCccEEEccCCcc-------
Confidence            44566777777777777 667665544  77777777655 2344544 43       677777777777776       


Q ss_pred             Cccchhhh--ccCCCcceEEEEecCcccccccccCc--cccCCceEEEEceeeeecccc--cccCCCCCeEEEcCCCCce
Q 048462           94 STSVLAEL--ESLENIHDISVTLCNVDAVNRVKSSP--KLQSCIKRLAVVLMASFLLPL--DLRMDHLETLEIDRCSLES  167 (325)
Q Consensus        94 ~~~~~~~l--~~l~~L~~L~l~~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~l~~--l~~l~~L~~L~l~~~~~~~  167 (325)
                      ....+..+  ..+++|+.|++++|.....+......  ....+|+.|+++++....++.  +..+++|++|++++|....
T Consensus       108 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  187 (312)
T 1wwl_A          108 TGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELG  187 (312)
T ss_dssp             BSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCH
T ss_pred             cchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCc
Confidence            34445544  66777777777777766542211100  011457777777665555552  7778888888888887431


Q ss_pred             e-ccccCCCCCccccccccccEEEecCCCCCCcccc-----ccCCCCccEEEEeccCCchhhcccCCCCCCCcccccccc
Q 048462          168 K-NDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDLKW-----IRYAPNLQFLYVSYCPRLSEIIGTYESPGTSEIEESQDF  241 (325)
Q Consensus       168 ~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-----~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~  241 (325)
                      . ..    ...+....+++|++|+++++ .++.++.     +..+++|++|++++|........           .....
T Consensus       188 ~~~~----~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-----------~~~~~  251 (312)
T 1wwl_A          188 ERGL----ISALCPLKFPTLQVLALRNA-GMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGA-----------PSCDW  251 (312)
T ss_dssp             HHHH----HHHSCTTSCTTCCEEECTTS-CCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCC-----------SCCCC
T ss_pred             chHH----HHHHHhccCCCCCEEECCCC-cCcchHHHHHHHHhcCCCCCEEECCCCcCCcccch-----------hhhhh
Confidence            0 00    00111145678888888888 6764332     23567888888888753222111           23345


Q ss_pred             CCcccEEeccCCCCcceeccCcccCCCccEEeeeCCCCCCCCCCCCCCcccceeEEech
Q 048462          242 FSNLMVIDLRHLPSLTSICCGVVPFPSLQTISVNGCPSLRKLPLNSGSAKNSLNAIRGS  300 (325)
Q Consensus       242 ~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~ip~~~~~~~~~l~~~~~~  300 (325)
                      +++|++|++++| .++.++....  ++|++|+++++ +++.+|. +..+ ..++.++..
T Consensus       252 l~~L~~L~Ls~N-~l~~ip~~~~--~~L~~L~Ls~N-~l~~~p~-~~~l-~~L~~L~L~  304 (312)
T 1wwl_A          252 PSQLNSLNLSFT-GLKQVPKGLP--AKLSVLDLSYN-RLDRNPS-PDEL-PQVGNLSLK  304 (312)
T ss_dssp             CTTCCEEECTTS-CCSSCCSSCC--SEEEEEECCSS-CCCSCCC-TTTS-CEEEEEECT
T ss_pred             cCCCCEEECCCC-ccChhhhhcc--CCceEEECCCC-CCCCChh-HhhC-CCCCEEecc
Confidence            678888888886 5666665443  77888888776 7777765 4444 555555443

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.79  E-value=4.4e-18  Score=155.54  Aligned_cols=120  Identities=21%  Similarity=0.199  Sum_probs=80.1

Q ss_pred             ccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEecccceeeeeeccCccchhhhccCC
Q 048462           26 INLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLAELESLE  105 (325)
Q Consensus        26 ~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~  105 (325)
                      ++|++|++++|.++.+| .+.++++|++|++++|.+. .+|..    ..+|++|++++|.+       . ..+ .+..++
T Consensus       131 ~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~-~lp~~----~~~L~~L~L~~n~l-------~-~l~-~~~~l~  195 (454)
T 1jl5_A          131 PLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLK-KLPDL----PPSLEFIAAGNNQL-------E-ELP-ELQNLP  195 (454)
T ss_dssp             TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCS-CCCCC----CTTCCEEECCSSCC-------S-SCC-CCTTCT
T ss_pred             CCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcCc-ccCCC----cccccEEECcCCcC-------C-cCc-cccCCC
Confidence            45666666666665565 3666666666666665433 24432    23666666666665       2 233 577888


Q ss_pred             CcceEEEEecCcccccccccCccccCCceEEEEceeeeecccccccCCCCCeEEEcCCCCc
Q 048462          106 NIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPLDLRMDHLETLEIDRCSLE  166 (325)
Q Consensus       106 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~l~~L~~L~l~~~~~~  166 (325)
                      +|+.|++++|....++...      ..|+.|+++++....+|.+..+++|++|++++|...
T Consensus       196 ~L~~L~l~~N~l~~l~~~~------~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N~l~  250 (454)
T 1jl5_A          196 FLTAIYADNNSLKKLPDLP------LSLESIVAGNNILEELPELQNLPFLTTIYADNNLLK  250 (454)
T ss_dssp             TCCEEECCSSCCSSCCCCC------TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCS
T ss_pred             CCCEEECCCCcCCcCCCCc------CcccEEECcCCcCCcccccCCCCCCCEEECCCCcCC
Confidence            8888888888766544322      368888888776667777888889999999888754

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.77  E-value=3.8e-18  Score=145.57  Aligned_cols=219  Identities=16%  Similarity=0.177  Sum_probs=135.5

Q ss_pred             ecCCCCCCCcCchhhhCcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEeccccee
Q 048462            8 DLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWFSTELV   87 (325)
Q Consensus         8 ~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~   87 (325)
                      ++..+ .+... .....+++|+.|+++++.++.++. +..+++|++|++++|.+.. ++ . +..+++|++|++++|.+ 
T Consensus        25 ~l~~~-~~~~~-~~~~~l~~L~~L~l~~~~i~~~~~-l~~l~~L~~L~l~~n~l~~-~~-~-l~~l~~L~~L~L~~n~l-   97 (272)
T 3rfs_A           25 NLKKK-SVTDA-VTQNELNSIDQIIANNSDIKSVQG-IQYLPNVRYLALGGNKLHD-IS-A-LKELTNLTYLILTGNQL-   97 (272)
T ss_dssp             HHTCS-CTTSE-ECHHHHTTCCEEECTTSCCCCCTT-GGGCTTCCEEECTTSCCCC-CG-G-GTTCTTCCEEECTTSCC-
T ss_pred             HhcCc-ccccc-cccccccceeeeeeCCCCcccccc-cccCCCCcEEECCCCCCCC-ch-h-hcCCCCCCEEECCCCcc-
Confidence            44444 34443 235567788888888887776653 7778888888888865443 44 3 77888888888888877 


Q ss_pred             eeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccccccCCCCCeEEEcCCCCce
Q 048462           88 ELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPLDLRMDHLETLEIDRCSLES  167 (325)
Q Consensus        88 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~l~~L~~L~l~~~~~~~  167 (325)
                            ....+..+..+++|+.|++++|....+..                        ..+..+++|++|++++|....
T Consensus        98 ------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~------------------------~~~~~l~~L~~L~L~~n~l~~  147 (272)
T 3rfs_A           98 ------QSLPNGVFDKLTNLKELVLVENQLQSLPD------------------------GVFDKLTNLTYLNLAHNQLQS  147 (272)
T ss_dssp             ------CCCCTTTTTTCTTCCEEECTTSCCCCCCT------------------------TTTTTCTTCCEEECCSSCCCC
T ss_pred             ------CccChhHhcCCcCCCEEECCCCcCCccCH------------------------HHhccCCCCCEEECCCCccCc
Confidence                  44444456777888888887776543211                        113456667777777765421


Q ss_pred             eccccCCCCCccccccccccEEEecCCCCCCcccc--ccCCCCccEEEEeccCCchhhcccCCCCCCCccccccccCCcc
Q 048462          168 KNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDLKW--IRYAPNLQFLYVSYCPRLSEIIGTYESPGTSEIEESQDFFSNL  245 (325)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L  245 (325)
                      ..     ...+  ..+++|++|++++| .++.++.  +..+++|++|++++|.. +.+..           ..+..+++|
T Consensus       148 ~~-----~~~~--~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~-----------~~~~~l~~L  207 (272)
T 3rfs_A          148 LP-----KGVF--DKLTNLTELDLSYN-QLQSLPEGVFDKLTQLKDLRLYQNQL-KSVPD-----------GVFDRLTSL  207 (272)
T ss_dssp             CC-----TTTT--TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCC-SCCCT-----------TTTTTCTTC
T ss_pred             cC-----HHHh--ccCccCCEEECCCC-CcCccCHHHhcCCccCCEEECCCCcC-CccCH-----------HHHhCCcCC
Confidence            10     0011  34667777777777 5666543  45677777777777753 22221           245667777


Q ss_pred             cEEeccCCCCcceeccCcccCCCccEEeeeCCCCCCCCCCCCCCc
Q 048462          246 MVIDLRHLPSLTSICCGVVPFPSLQTISVNGCPSLRKLPLNSGSA  290 (325)
Q Consensus       246 ~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~ip~~~~~~  290 (325)
                      +.|++.+|+-       .+.++.|+.+++..+..-..+|..+...
T Consensus       208 ~~L~l~~N~~-------~~~~~~l~~l~~~~n~~~g~ip~~~~~~  245 (272)
T 3rfs_A          208 QYIWLHDNPW-------DCTCPGIRYLSEWINKHSGVVRNSAGSV  245 (272)
T ss_dssp             CEEECCSSCB-------CCCTTTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred             CEEEccCCCc-------cccCcHHHHHHHHHHhCCCcccCccccc
Confidence            7777777631       2346677777776653333566666555

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.77  E-value=5.2e-18  Score=141.87  Aligned_cols=208  Identities=14%  Similarity=0.121  Sum_probs=129.9

Q ss_pred             CCCcCchhhhCcccCceecCCCCcccccCh-hhhccccCceeeccCCCCCeeechhhhhCCCcccEEEecc-cceeeeee
Q 048462           14 DLVKLPEAIGKLINLCYLNLSNTRIGQLPT-GITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWFS-TELVELHY   91 (325)
Q Consensus        14 ~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~   91 (325)
                      .++.+|. +.  .+|++|++++|.++.+|. .+.++++|++|++++|...+.++...+.++++|++|++++ +.+     
T Consensus        22 ~l~~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l-----   93 (239)
T 2xwt_C           22 DIQRIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNL-----   93 (239)
T ss_dssp             SCSSCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTC-----
T ss_pred             CccccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCe-----
Confidence            3666666 33  378888888888877766 5677888888888886545555543377788888888887 666     


Q ss_pred             ccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccccccCCCCC---eEEEcCC-CCce
Q 048462           92 VDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPLDLRMDHLE---TLEIDRC-SLES  167 (325)
Q Consensus        92 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~l~~L~---~L~l~~~-~~~~  167 (325)
                        ....+..+..+++|+.|++++|....++.                          +..+++|+   .|++++| ....
T Consensus        94 --~~i~~~~f~~l~~L~~L~l~~n~l~~lp~--------------------------~~~l~~L~~L~~L~l~~N~~l~~  145 (239)
T 2xwt_C           94 --TYIDPDALKELPLLKFLGIFNTGLKMFPD--------------------------LTKVYSTDIFFILEITDNPYMTS  145 (239)
T ss_dssp             --CEECTTSEECCTTCCEEEEEEECCCSCCC--------------------------CTTCCBCCSEEEEEEESCTTCCE
T ss_pred             --eEcCHHHhCCCCCCCEEeCCCCCCccccc--------------------------cccccccccccEEECCCCcchhh
Confidence              33334456677788888887776554432                          23444444   7777776 3322


Q ss_pred             eccccCCCCCcccccccccc-EEEecCCCCCCccccc-cCCCCccEEEEeccCCchhhcccCCCCCCCccccccccC-Cc
Q 048462          168 KNDYFGDQGRTRTYCFRNLR-HLSVKTCPCMTDLKWI-RYAPNLQFLYVSYCPRLSEIIGTYESPGTSEIEESQDFF-SN  244 (325)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~l~~l~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~  244 (325)
                      ..     .+.+  ..+++|+ +|+++++ .++.++.. ...++|++|++++|+.++.+..           ..+..+ ++
T Consensus       146 i~-----~~~~--~~l~~L~~~L~l~~n-~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~-----------~~~~~l~~~  206 (239)
T 2xwt_C          146 IP-----VNAF--QGLCNETLTLKLYNN-GFTSVQGYAFNGTKLDAVYLNKNKYLTVIDK-----------DAFGGVYSG  206 (239)
T ss_dssp             EC-----TTTT--TTTBSSEEEEECCSC-CCCEECTTTTTTCEEEEEECTTCTTCCEECT-----------TTTTTCSBC
T ss_pred             cC-----cccc--cchhcceeEEEcCCC-CCcccCHhhcCCCCCCEEEcCCCCCcccCCH-----------HHhhccccC
Confidence            11     1111  3466777 7777777 56665431 1236777777777754544432           244556 77


Q ss_pred             ccEEeccCCCCcceeccCcccCCCccEEeeeCCCC
Q 048462          245 LMVIDLRHLPSLTSICCGVVPFPSLQTISVNGCPS  279 (325)
Q Consensus       245 L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~  279 (325)
                      |+.|+++++ .++.++..  .+++|+.|.+.++..
T Consensus       207 L~~L~l~~N-~l~~l~~~--~~~~L~~L~l~~~~~  238 (239)
T 2xwt_C          207 PSLLDVSQT-SVTALPSK--GLEHLKELIARNTWT  238 (239)
T ss_dssp             CSEEECTTC-CCCCCCCT--TCTTCSEEECTTC--
T ss_pred             CcEEECCCC-ccccCChh--HhccCceeeccCccC
Confidence            888888875 56666554  577888888877654

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.77  E-value=3.5e-18  Score=146.04  Aligned_cols=209  Identities=17%  Similarity=0.167  Sum_probs=118.5

Q ss_pred             CCCcCchhhhCcccCceecCCCCcccccCh-hhhccccCceeeccCCCCCeeechhhhhCCCcccEEEecccceeeeeec
Q 048462           14 DLVKLPEAIGKLINLCYLNLSNTRIGQLPT-GITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWFSTELVELHYV   92 (325)
Q Consensus        14 ~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~   92 (325)
                      .+..+|..+.  ++|++|++++|.++.++. .+.++++|++|++++|.+....+.. +..+++|++|++++|.+      
T Consensus        18 ~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l------   88 (276)
T 2z62_A           18 NFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGA-YQSLSHLSTLILTGNPI------   88 (276)
T ss_dssp             CCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTT-TTTCTTCCEEECTTCCC------
T ss_pred             CccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHH-ccCCcCCCEEECCCCcc------
Confidence            4445555443  356666666666655544 4566666666666665443333333 66666666666666665      


Q ss_pred             cCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeee--cccc-cccCCCCCeEEEcCCCCceec
Q 048462           93 DSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASF--LLPL-DLRMDHLETLEIDRCSLESKN  169 (325)
Q Consensus        93 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~l~~-l~~l~~L~~L~l~~~~~~~~~  169 (325)
                       ....+..+..+++|+.|++.++....+....  .....+|+.|+++++...  .+|. +..+++|++|++++|......
T Consensus        89 -~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~  165 (276)
T 2z62_A           89 -QSLALGAFSGLSSLQKLVAVETNLASLENFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY  165 (276)
T ss_dssp             -CEECTTTTTTCTTCCEEECTTSCCCCSTTCC--CTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC
T ss_pred             -CccChhhhcCCccccEEECCCCCccccCchh--cccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCC
Confidence             3333445566666666666666554433211  111234666666654433  2444 777888888888888754221


Q ss_pred             cccCCCCCcccccccccc----EEEecCCCCCCccc-cccCCCCccEEEEeccCCchhhcccCCCCCCCccccccccCCc
Q 048462          170 DYFGDQGRTRTYCFRNLR----HLSVKTCPCMTDLK-WIRYAPNLQFLYVSYCPRLSEIIGTYESPGTSEIEESQDFFSN  244 (325)
Q Consensus       170 ~~~~~~~~~~~~~~~~L~----~L~l~~~~~l~~l~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  244 (325)
                      .     ..+  ..+++|+    +|+++++ .++.++ ......+|++|++++|. ++.+..           ..+..+++
T Consensus       166 ~-----~~~--~~l~~L~~l~l~L~ls~n-~l~~~~~~~~~~~~L~~L~L~~n~-l~~~~~-----------~~~~~l~~  225 (276)
T 2z62_A          166 C-----TDL--RVLHQMPLLNLSLDLSLN-PMNFIQPGAFKEIRLKELALDTNQ-LKSVPD-----------GIFDRLTS  225 (276)
T ss_dssp             G-----GGG--HHHHTCTTCCEEEECCSS-CCCEECTTSSCSCCEEEEECCSSC-CSCCCT-----------TTTTTCCS
T ss_pred             H-----HHh--hhhhhccccceeeecCCC-cccccCccccCCCcccEEECCCCc-eeecCH-----------hHhccccc
Confidence            1     111  2334444    7788877 666653 23334578888888875 333322           24567888


Q ss_pred             ccEEeccCCC
Q 048462          245 LMVIDLRHLP  254 (325)
Q Consensus       245 L~~L~l~~~~  254 (325)
                      |+.|++.+++
T Consensus       226 L~~L~l~~N~  235 (276)
T 2z62_A          226 LQKIWLHTNP  235 (276)
T ss_dssp             CCEEECCSSC
T ss_pred             ccEEEccCCc
Confidence            8888888764

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.77  E-value=5.8e-19  Score=153.67  Aligned_cols=218  Identities=16%  Similarity=0.131  Sum_probs=152.6

Q ss_pred             CcEEecCCCCCCC--cCchhhh-------CcccCceecCCCCccc-ccChhh--hccccCceeeccCCCCCeeechhhhh
Q 048462            4 LAVLDLSYNLDLV--KLPEAIG-------KLINLCYLNLSNTRIG-QLPTGI--TYLKNLKILRLDGMRYLAFVPCQVIS   71 (325)
Q Consensus         4 L~~L~l~~~~~~~--~lp~~~~-------~l~~L~~L~l~~~~l~-~lp~~l--~~l~~L~~L~l~~~~~~~~~~~~~~~   71 (325)
                      |++|++++| .++  .+|..+.       .+++|++|++++|.++ .+|..+  ..+++|++|++++|.+... |.. +.
T Consensus        65 L~~L~L~~n-~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~-~~  141 (312)
T 1wwl_A           65 IKSLSLKRL-TVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAW-LA  141 (312)
T ss_dssp             HHHCCCCEE-EEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSH-HH
T ss_pred             Hhhcccccc-cccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHH-HH
Confidence            566778877 554  3566555       6888888888888885 677765  7888888888888766554 655 66


Q ss_pred             CC-----CcccEEEecccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccc-c-CccccCCceEEEEceeeee
Q 048462           72 SL-----SSLQVFSWFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVK-S-SPKLQSCIKRLAVVLMASF  144 (325)
Q Consensus        72 ~l-----~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~-~~~~~~~L~~L~l~~~~~~  144 (325)
                      .+     ++|++|++++|.+       ....+..+..+++|+.|++++|...+..... . .......|+.|+++++...
T Consensus       142 ~l~~~~~~~L~~L~L~~N~l-------~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~  214 (312)
T 1wwl_A          142 ELQQWLKPGLKVLSIAQAHS-------LNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGME  214 (312)
T ss_dssp             HHHTTCCTTCCEEEEESCSC-------CCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCC
T ss_pred             HHHHhhcCCCcEEEeeCCCC-------ccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCc
Confidence            65     8888888888887       4555577888888888888888754321111 0 1122345888888876554


Q ss_pred             cccc-----cccCCCCCeEEEcCCCCceeccccCCCCCccc-cccccccEEEecCCCCCCccccccCCCCccEEEEeccC
Q 048462          145 LLPL-----DLRMDHLETLEIDRCSLESKNDYFGDQGRTRT-YCFRNLRHLSVKTCPCMTDLKWIRYAPNLQFLYVSYCP  218 (325)
Q Consensus       145 ~l~~-----l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~  218 (325)
                      .++.     +..+++|++|++++|......       ..+. ..+++|++|+++++ .++.++.... ++|++|++++|.
T Consensus       215 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-------~~~~~~~l~~L~~L~Ls~N-~l~~ip~~~~-~~L~~L~Ls~N~  285 (312)
T 1wwl_A          215 TPSGVCSALAAARVQLQGLDLSHNSLRDAA-------GAPSCDWPSQLNSLNLSFT-GLKQVPKGLP-AKLSVLDLSYNR  285 (312)
T ss_dssp             CHHHHHHHHHHTTCCCSEEECTTSCCCSSC-------CCSCCCCCTTCCEEECTTS-CCSSCCSSCC-SEEEEEECCSSC
T ss_pred             chHHHHHHHHhcCCCCCEEECCCCcCCccc-------chhhhhhcCCCCEEECCCC-ccChhhhhcc-CCceEEECCCCC
Confidence            3332     356789999999999864211       0111 34689999999999 7887764332 889999999986


Q ss_pred             CchhhcccCCCCCCCccccccccCCcccEEeccCCC
Q 048462          219 RLSEIIGTYESPGTSEIEESQDFFSNLMVIDLRHLP  254 (325)
Q Consensus       219 ~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  254 (325)
                      . +.+            + .+..+++|++|++.+++
T Consensus       286 l-~~~------------p-~~~~l~~L~~L~L~~N~  307 (312)
T 1wwl_A          286 L-DRN------------P-SPDELPQVGNLSLKGNP  307 (312)
T ss_dssp             C-CSC------------C-CTTTSCEEEEEECTTCT
T ss_pred             C-CCC------------h-hHhhCCCCCEEeccCCC
Confidence            3 322            2 36788999999999873

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.76  E-value=1.4e-17  Score=157.27  Aligned_cols=218  Identities=21%  Similarity=0.176  Sum_probs=143.9

Q ss_pred             CCCcEEecCCCCCCCcCchhhhCcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEe
Q 048462            2 HALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSW   81 (325)
Q Consensus         2 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l   81 (325)
                      ++|++|++++| .++.+|.   .+++|++|++++|.++.+|.   .+++|++|++++|.+. .+|.    .+++|+.|++
T Consensus        61 ~~L~~L~L~~N-~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~-~l~~----~l~~L~~L~L  128 (622)
T 3g06_A           61 AHITTLVIPDN-NLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLT-HLPA----LPSGLCKLWI  128 (622)
T ss_dssp             TTCSEEEECSC-CCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCCC-CCCC----CCTTCCEEEC
T ss_pred             CCCcEEEecCC-CCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcCC-CCCC----CCCCcCEEEC
Confidence            45777777777 6777665   45677777777777766665   5666777777665332 2332    2344555555


Q ss_pred             cccceeeeeeccCccchhhh-----------------ccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeee
Q 048462           82 FSTELVELHYVDSTSVLAEL-----------------ESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASF  144 (325)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~l-----------------~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  144 (325)
                      ++|.+        ..++..+                 ...++|+.|++.+|....++      ....+|+.|+++++...
T Consensus       129 ~~N~l--------~~lp~~l~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~------~~~~~L~~L~Ls~N~l~  194 (622)
T 3g06_A          129 FGNQL--------TSLPVLPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLP------MLPSGLQELSVSDNQLA  194 (622)
T ss_dssp             CSSCC--------SCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCC------CCCTTCCEEECCSSCCS
T ss_pred             CCCCC--------CcCCCCCCCCCEEECcCCcCCCcCCccCCCCEEECCCCCCCCCc------ccCCCCcEEECCCCCCC
Confidence            55544        1111110                 01234555555555444332      22356899999977666


Q ss_pred             cccccccCCCCCeEEEcCCCCceeccccCCCCCccccccccccEEEecCCCCCCccccccCCCCccEEEEeccCCchhhc
Q 048462          145 LLPLDLRMDHLETLEIDRCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDLKWIRYAPNLQFLYVSYCPRLSEII  224 (325)
Q Consensus       145 ~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~  224 (325)
                      .+|.  .+++|+.|++++|...          .++ ..+++|++|+++++ .++.++  ..+++|+.|++++|. ++.+.
T Consensus       195 ~l~~--~~~~L~~L~L~~N~l~----------~l~-~~~~~L~~L~Ls~N-~L~~lp--~~l~~L~~L~Ls~N~-L~~lp  257 (622)
T 3g06_A          195 SLPT--LPSELYKLWAYNNRLT----------SLP-ALPSGLKELIVSGN-RLTSLP--VLPSELKELMVSGNR-LTSLP  257 (622)
T ss_dssp             CCCC--CCTTCCEEECCSSCCS----------SCC-CCCTTCCEEECCSS-CCSCCC--CCCTTCCEEECCSSC-CSCCC
T ss_pred             CCCC--ccchhhEEECcCCccc----------ccC-CCCCCCCEEEccCC-ccCcCC--CCCCcCcEEECCCCC-CCcCC
Confidence            6665  3578999999998764          222 23578999999998 788777  557899999999985 33321


Q ss_pred             ccCCCCCCCccccccccCCcccEEeccCCCCcceeccCcccCCCccEEeeeCCC
Q 048462          225 GTYESPGTSEIEESQDFFSNLMVIDLRHLPSLTSICCGVVPFPSLQTISVNGCP  278 (325)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~  278 (325)
                                  .   .+++|+.|++++| .+..+|.....+++|+.|++++|+
T Consensus       258 ------------~---~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~  295 (622)
T 3g06_A          258 ------------M---LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNP  295 (622)
T ss_dssp             ------------C---CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCC
T ss_pred             ------------c---ccccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCC
Confidence                        1   5788999999997 677887777789999999999884

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.76  E-value=3e-17  Score=139.85  Aligned_cols=172  Identities=16%  Similarity=0.240  Sum_probs=101.9

Q ss_pred             CCcEEecCCCCCCCcCchhhhCcccCceecCCCCcccccCh-hhhccccCceeeccCCCCCeeechhhhhCCCcccEEEe
Q 048462            3 ALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPT-GITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSW   81 (325)
Q Consensus         3 ~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l   81 (325)
                      ..+.++++++ .++.+|..+.  .+|++|++++|.++.++. .+.++++|++|++++|.+. .++...+..+++|++|++
T Consensus        17 ~~~~l~~~~~-~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l   92 (270)
T 2o6q_A           17 NKNSVDCSSK-KLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWV   92 (270)
T ss_dssp             TTTEEECTTS-CCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEEC
T ss_pred             CCCEEEccCC-CCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEEC
Confidence            4567788877 6777776554  577888888887776654 5677888888888775544 445442567788888888


Q ss_pred             cccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccccccCCCCCeEEEc
Q 048462           82 FSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPLDLRMDHLETLEID  161 (325)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~l~~L~~L~l~  161 (325)
                      ++|.+       ....+..+..+++|+.|++++|....+..                        ..+..+++|++|+++
T Consensus        93 ~~n~l-------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~------------------------~~~~~l~~L~~L~Ls  141 (270)
T 2o6q_A           93 TDNKL-------QALPIGVFDQLVNLAELRLDRNQLKSLPP------------------------RVFDSLTKLTYLSLG  141 (270)
T ss_dssp             CSSCC-------CCCCTTTTTTCSSCCEEECCSSCCCCCCT------------------------TTTTTCTTCCEEECC
T ss_pred             CCCcC-------CcCCHhHcccccCCCEEECCCCccCeeCH------------------------HHhCcCcCCCEEECC
Confidence            88776       33334455667777777777765443211                        013355556666665


Q ss_pred             CCCCceeccccCCCCCccccccccccEEEecCCCCCCcccc--ccCCCCccEEEEecc
Q 048462          162 RCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDLKW--IRYAPNLQFLYVSYC  217 (325)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~--~~~~~~L~~L~l~~~  217 (325)
                      +|......     ...+  ..+++|++|+++++ .++.++.  +..+++|++|++++|
T Consensus       142 ~n~l~~~~-----~~~~--~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N  191 (270)
T 2o6q_A          142 YNELQSLP-----KGVF--DKLTSLKELRLYNN-QLKRVPEGAFDKLTELKTLKLDNN  191 (270)
T ss_dssp             SSCCCCCC-----TTTT--TTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCcCCccC-----HhHc--cCCcccceeEecCC-cCcEeChhHhccCCCcCEEECCCC
Confidence            55432110     0001  23455666666555 4554432  344555666666555

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.75  E-value=2.1e-17  Score=141.20  Aligned_cols=214  Identities=18%  Similarity=0.100  Sum_probs=146.9

Q ss_pred             ecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEecccceeeeeeccCccchhhhccCCCcceE
Q 048462           31 LNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLAELESLENIHDI  110 (325)
Q Consensus        31 L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L  110 (325)
                      .+-.+..+.++|..+.  ++|++|++++|.+....+.. +..+++|++|++++|.+       .......+..+++|+.|
T Consensus        12 ~~c~~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~-~~~l~~L~~L~l~~n~l-------~~~~~~~~~~l~~L~~L   81 (276)
T 2z62_A           12 YQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYS-FFSFPELQVLDLSRCEI-------QTIEDGAYQSLSHLSTL   81 (276)
T ss_dssp             EECTTSCCSSCCSSSC--TTCCEEECTTCCCCEECTTT-TTTCTTCSEEECTTCCC-------CEECTTTTTTCTTCCEE
T ss_pred             EEecCCCccccCCCCC--CCccEEECCCCcccccCHhH-hccccCCcEEECCCCcC-------CccCHHHccCCcCCCEE
Confidence            3344445677887653  57999999997665544445 89999999999999987       44445578899999999


Q ss_pred             EEEecCcccccccccCccccCCceEEEEceeeeecccc--cccCCCCCeEEEcCCCCceeccccCCCCCccccccccccE
Q 048462          111 SVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPL--DLRMDHLETLEIDRCSLESKNDYFGDQGRTRTYCFRNLRH  188 (325)
Q Consensus       111 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~--l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~  188 (325)
                      ++++|....+...  ......+|+.|+++++....++.  +..+++|++|++++|......+    +..+  ..+++|++
T Consensus        82 ~L~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l----~~~~--~~l~~L~~  153 (276)
T 2z62_A           82 ILTGNPIQSLALG--AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKL----PEYF--SNLTNLEH  153 (276)
T ss_dssp             ECTTCCCCEECTT--TTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCC----CGGG--GGCTTCCE
T ss_pred             ECCCCccCccChh--hhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecC----chhh--ccCCCCCE
Confidence            9999987655321  11223458889888766555554  7788899999999887642111    1111  56788999


Q ss_pred             EEecCCCCCCccc--cccCCCCcc----EEEEeccCCchhhcccCCCCCCCccccccccCCcccEEeccCCCCcceeccC
Q 048462          189 LSVKTCPCMTDLK--WIRYAPNLQ----FLYVSYCPRLSEIIGTYESPGTSEIEESQDFFSNLMVIDLRHLPSLTSICCG  262 (325)
Q Consensus       189 L~l~~~~~l~~l~--~~~~~~~L~----~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~  262 (325)
                      |+++++ .++.++  .+..+++|+    +|++++|.. +.+..            ......+|+.|++++| .++.++..
T Consensus       154 L~Ls~N-~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l-~~~~~------------~~~~~~~L~~L~L~~n-~l~~~~~~  218 (276)
T 2z62_A          154 LDLSSN-KIQSIYCTDLRVLHQMPLLNLSLDLSLNPM-NFIQP------------GAFKEIRLKELALDTN-QLKSVPDG  218 (276)
T ss_dssp             EECCSS-CCCEECGGGGHHHHTCTTCCEEEECCSSCC-CEECT------------TSSCSCCEEEEECCSS-CCSCCCTT
T ss_pred             EECCCC-CCCcCCHHHhhhhhhccccceeeecCCCcc-cccCc------------cccCCCcccEEECCCC-ceeecCHh
Confidence            999988 677653  333444444    788888753 33322            2333447999999987 57766654


Q ss_pred             c-ccCCCccEEeeeCC
Q 048462          263 V-VPFPSLQTISVNGC  277 (325)
Q Consensus       263 ~-~~~~~L~~L~l~~c  277 (325)
                      . ..+++|+.|+++++
T Consensus       219 ~~~~l~~L~~L~l~~N  234 (276)
T 2z62_A          219 IFDRLTSLQKIWLHTN  234 (276)
T ss_dssp             TTTTCCSCCEEECCSS
T ss_pred             HhcccccccEEEccCC
Confidence            3 45888999999876

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.75  E-value=6e-19  Score=155.05  Aligned_cols=200  Identities=17%  Similarity=0.167  Sum_probs=153.8

Q ss_pred             CCCcEEecCCCCCCCcCchhhhCcccCceecCCCCccc--ccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEE
Q 048462            2 HALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIG--QLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVF   79 (325)
Q Consensus         2 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~--~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L   79 (325)
                      +++++|+++++ .++..+..+..+++|++|++++|.+.  .++..+.++++|++|++++|......+.. ++.+++|++|
T Consensus        70 ~~l~~L~l~~n-~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~-l~~~~~L~~L  147 (336)
T 2ast_B           70 QGVIAFRCPRS-FMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNT-LAKNSNLVRL  147 (336)
T ss_dssp             TTCSEEECTTC-EECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHH-HTTCTTCSEE
T ss_pred             ccceEEEcCCc-cccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHH-HhcCCCCCEE
Confidence            57899999999 77777666778999999999999885  38888899999999999998877677776 8999999999


Q ss_pred             Eeccc-ceeeeeeccCc-cchhhhccCCCcceEEEEec-CcccccccccCccccC-CceEEEEceeee----ecccc-cc
Q 048462           80 SWFST-ELVELHYVDST-SVLAELESLENIHDISVTLC-NVDAVNRVKSSPKLQS-CIKRLAVVLMAS----FLLPL-DL  150 (325)
Q Consensus        80 ~l~~~-~~~~~~~~~~~-~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~-~L~~L~l~~~~~----~~l~~-l~  150 (325)
                      ++++| .+       .. ..+..+..+++|+.|++++| ..... .+........ +|++|+++++..    ..++. +.
T Consensus       148 ~L~~~~~l-------~~~~l~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~  219 (336)
T 2ast_B          148 NLSGCSGF-------SEFALQTLLSSCSRLDELNLSWCFDFTEK-HVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVR  219 (336)
T ss_dssp             ECTTCBSC-------CHHHHHHHHHHCTTCCEEECCCCTTCCHH-HHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHH
T ss_pred             ECCCCCCC-------CHHHHHHHHhcCCCCCEEcCCCCCCcChH-HHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHh
Confidence            99999 44       33 35666888999999999999 65531 1111112233 699999998752    34455 67


Q ss_pred             cCCCCCeEEEcCCCCceeccccCCCCCccccccccccEEEecCCCCCCc--cccccCCCCccEEEEecc
Q 048462          151 RMDHLETLEIDRCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTD--LKWIRYAPNLQFLYVSYC  217 (325)
Q Consensus       151 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--l~~~~~~~~L~~L~l~~~  217 (325)
                      .+++|+.|++++|..+....    ...+  ..+++|++|++++|..+.+  +..+..+++|++|++++|
T Consensus       220 ~~~~L~~L~l~~~~~l~~~~----~~~l--~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          220 RCPNLVHLDLSDSVMLKNDC----FQEF--FQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             HCTTCSEEECTTCTTCCGGG----GGGG--GGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             hCCCCCEEeCCCCCcCCHHH----HHHH--hCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence            89999999999998531100    1111  5679999999999965544  235778999999999998

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.74  E-value=5e-19  Score=158.66  Aligned_cols=243  Identities=12%  Similarity=0.088  Sum_probs=128.0

Q ss_pred             cCchhhhCcccCceecCCCCcccc-----cChhhhccccCceeeccCCCC---Ceeechh------hhhCCCcccEEEec
Q 048462           17 KLPEAIGKLINLCYLNLSNTRIGQ-----LPTGITYLKNLKILRLDGMRY---LAFVPCQ------VISSLSSLQVFSWF   82 (325)
Q Consensus        17 ~lp~~~~~l~~L~~L~l~~~~l~~-----lp~~l~~l~~L~~L~l~~~~~---~~~~~~~------~~~~l~~L~~L~l~   82 (325)
                      .++..+..+++|++|++++|.++.     ++..+.++++|++|++++|..   .+.+|..      .+..+++|++|+++
T Consensus        23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls  102 (386)
T 2ca6_A           23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS  102 (386)
T ss_dssp             TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred             HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence            455556666677777777766532     333355667777777766422   2233333      02566677777777


Q ss_pred             ccceeeeeeccCc----cchhhhccCCCcceEEEEecCccccc--ccccCcccc---------CCceEEEEceeee--ec
Q 048462           83 STELVELHYVDST----SVLAELESLENIHDISVTLCNVDAVN--RVKSSPKLQ---------SCIKRLAVVLMAS--FL  145 (325)
Q Consensus        83 ~~~~~~~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~~~~~--~~~~~~~~~---------~~L~~L~l~~~~~--~~  145 (325)
                      +|.+       ..    .++..+..+++|++|++++|......  .+.......         ..|++|+++++..  ..
T Consensus       103 ~n~l-------~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~  175 (386)
T 2ca6_A          103 DNAF-------GPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGS  175 (386)
T ss_dssp             SCCC-------CTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGG
T ss_pred             CCcC-------CHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHH
Confidence            7665       22    24455666677777777666553211  111110001         3466777765433  23


Q ss_pred             cc----ccccCCCCCeEEEcCCCCceeccccCCCCCcc-c-cccccccEEEecCCCCCC-----cc-ccccCCCCccEEE
Q 048462          146 LP----LDLRMDHLETLEIDRCSLESKNDYFGDQGRTR-T-YCFRNLRHLSVKTCPCMT-----DL-KWIRYAPNLQFLY  213 (325)
Q Consensus       146 l~----~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~-~-~~~~~L~~L~l~~~~~l~-----~l-~~~~~~~~L~~L~  213 (325)
                      ++    .+..+++|++|++++|...+...    ....+ . ..+++|++|++++| .++     .+ ..+..+++|++|+
T Consensus       176 ~~~l~~~l~~~~~L~~L~L~~n~l~~~g~----~~l~~~~l~~~~~L~~L~Ls~n-~l~~~g~~~l~~~l~~~~~L~~L~  250 (386)
T 2ca6_A          176 MKEWAKTFQSHRLLHTVKMVQNGIRPEGI----EHLLLEGLAYCQELKVLDLQDN-TFTHLGSSALAIALKSWPNLRELG  250 (386)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSSCCCHHHH----HHHHHTTGGGCTTCCEEECCSS-CCHHHHHHHHHHHGGGCTTCCEEE
T ss_pred             HHHHHHHHHhCCCcCEEECcCCCCCHhHH----HHHHHHHhhcCCCccEEECcCC-CCCcHHHHHHHHHHccCCCcCEEE
Confidence            33    24566777777777776431110    00111 1 35667777777777 453     22 2345667777777


Q ss_pred             EeccCCchhhcccCCCCCCCcccccc--ccCCcccEEeccCCCCcce-----eccCc-ccCCCccEEeeeCCCCCC
Q 048462          214 VSYCPRLSEIIGTYESPGTSEIEESQ--DFFSNLMVIDLRHLPSLTS-----ICCGV-VPFPSLQTISVNGCPSLR  281 (325)
Q Consensus       214 l~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~l~~-----~~~~~-~~~~~L~~L~l~~c~~l~  281 (325)
                      +++|..-.....        .++..+  +.+++|+.|++++| .+..     ++... ..+++|+.|++++| .++
T Consensus       251 L~~n~i~~~~~~--------~l~~~l~~~~~~~L~~L~L~~n-~i~~~g~~~l~~~l~~~l~~L~~L~l~~N-~l~  316 (386)
T 2ca6_A          251 LNDCLLSARGAA--------AVVDAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGN-RFS  316 (386)
T ss_dssp             CTTCCCCHHHHH--------HHHHHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTS-BSC
T ss_pred             CCCCCCchhhHH--------HHHHHHhhccCCCeEEEECcCC-cCCHHHHHHHHHHHHhcCCCceEEEccCC-cCC
Confidence            777753222100        011233  23677777777776 3433     44443 33677777777766 344

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.74  E-value=1.4e-18  Score=160.31  Aligned_cols=231  Identities=17%  Similarity=0.131  Sum_probs=172.6

Q ss_pred             CCCcEEecCCCCCCCcC-chhhhCcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEE
Q 048462            2 HALAVLDLSYNLDLVKL-PEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFS   80 (325)
Q Consensus         2 ~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~   80 (325)
                      ++|++|++++| .++.+ |..++.+++|++|++++|.++..+. +..+++|++|++++|.+. .++     ..++|++|+
T Consensus        34 ~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~-~l~-----~~~~L~~L~  105 (487)
T 3oja_A           34 WNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQ-ELL-----VGPSIETLH  105 (487)
T ss_dssp             GGCCEEECCSS-CCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEE-EEE-----ECTTCCEEE
T ss_pred             CCccEEEeeCC-cCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCC-CCC-----CCCCcCEEE
Confidence            48999999999 78877 5789999999999999999976655 899999999999997543 333     348999999


Q ss_pred             ecccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeec--ccccc-cCCCCCe
Q 048462           81 WFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFL--LPLDL-RMDHLET  157 (325)
Q Consensus        81 l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--l~~l~-~l~~L~~  157 (325)
                      +++|.+       ....+   ..+++|+.|++++|.........  .....+|+.|+++++....  .+.+. .+++|+.
T Consensus       106 L~~N~l-------~~~~~---~~l~~L~~L~L~~N~l~~~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~  173 (487)
T 3oja_A          106 AANNNI-------SRVSC---SRGQGKKNIYLANNKITMLRDLD--EGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH  173 (487)
T ss_dssp             CCSSCC-------CCEEE---CCCSSCEEEECCSSCCCSGGGBC--GGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCE
T ss_pred             CcCCcC-------CCCCc---cccCCCCEEECCCCCCCCCCchh--hcCCCCCCEEECCCCCCCCcChHHHhhhCCcccE
Confidence            999987       22222   24688999999999877653321  1224569999999655443  22354 7899999


Q ss_pred             EEEcCCCCceeccccCCCCCccccccccccEEEecCCCCCCcc-ccccCCCCccEEEEeccCCchhhcccCCCCCCCccc
Q 048462          158 LEIDRCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDL-KWIRYAPNLQFLYVSYCPRLSEIIGTYESPGTSEIE  236 (325)
Q Consensus       158 L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~  236 (325)
                      |++++|.....         .+...+++|++|+++++ .++.+ +.+..+++|+.|++++|.. ..+            +
T Consensus       174 L~Ls~N~l~~~---------~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~L~~L~Ls~N~l-~~l------------p  230 (487)
T 3oja_A          174 LNLQYNFIYDV---------KGQVVFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNNKL-VLI------------E  230 (487)
T ss_dssp             EECTTSCCCEE---------ECCCCCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTSCC-CEE------------C
T ss_pred             EecCCCccccc---------cccccCCCCCEEECCCC-CCCCCCHhHcCCCCccEEEecCCcC-ccc------------c
Confidence            99999987532         11135789999999999 78876 4567789999999999863 333            3


Q ss_pred             cccccCCcccEEeccCCCCc-ceeccCcccCCCccEEeee
Q 048462          237 ESQDFFSNLMVIDLRHLPSL-TSICCGVVPFPSLQTISVN  275 (325)
Q Consensus       237 ~~~~~~~~L~~L~l~~~~~l-~~~~~~~~~~~~L~~L~l~  275 (325)
                      ..+..+++|+.|++.+|+-. ..++.....++.|+.+++.
T Consensus       231 ~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          231 KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             TTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred             hhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence            46778899999999998543 2333334456777777764

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.74  E-value=2.1e-17  Score=143.52  Aligned_cols=170  Identities=17%  Similarity=0.193  Sum_probs=108.5

Q ss_pred             hhCcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEecccceeeeeeccCccchhhh
Q 048462           22 IGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLAEL  101 (325)
Q Consensus        22 ~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l  101 (325)
                      .+.+++|++|+++++.++.++ .+.++++|++|++++|.+ ..++.  +..+++|++|++++|.+       ..  ...+
T Consensus        37 ~~~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i-~~~~~--~~~l~~L~~L~L~~n~l-------~~--~~~~  103 (308)
T 1h6u_A           37 QADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQI-TDLAP--LKNLTKITELELSGNPL-------KN--VSAI  103 (308)
T ss_dssp             HHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCC-CCCGG--GTTCCSCCEEECCSCCC-------SC--CGGG
T ss_pred             HHHcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcC-CCChh--HccCCCCCEEEccCCcC-------CC--chhh
Confidence            456788888888888887776 578888888888888654 34444  77888888888888877       22  2357


Q ss_pred             ccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccccccCCCCCeEEEcCCCCceeccccCCCCCcccc
Q 048462          102 ESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPLDLRMDHLETLEIDRCSLESKNDYFGDQGRTRTY  181 (325)
Q Consensus       102 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~  181 (325)
                      ..+++|+.|++++|....++.+.    ...+|+.|+++++....++.+..+++|+.|++++|...+.         .+..
T Consensus       104 ~~l~~L~~L~l~~n~l~~~~~l~----~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~---------~~l~  170 (308)
T 1h6u_A          104 AGLQSIKTLDLTSTQITDVTPLA----GLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDL---------TPLA  170 (308)
T ss_dssp             TTCTTCCEEECTTSCCCCCGGGT----TCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC---------GGGT
T ss_pred             cCCCCCCEEECCCCCCCCchhhc----CCCCCCEEECCCCccCcCccccCCCCccEEEccCCcCCCC---------hhhc
Confidence            77888888888887766544322    1233566666655544455555666666666666554211         1113


Q ss_pred             ccccccEEEecCCCCCCccccccCCCCccEEEEeccC
Q 048462          182 CFRNLRHLSVKTCPCMTDLKWIRYAPNLQFLYVSYCP  218 (325)
Q Consensus       182 ~~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~  218 (325)
                      .+++|++|+++++ .+++++.+..+++|++|++++|.
T Consensus       171 ~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~L~~N~  206 (308)
T 1h6u_A          171 NLSKLTTLKADDN-KISDISPLASLPNLIEVHLKNNQ  206 (308)
T ss_dssp             TCTTCCEEECCSS-CCCCCGGGGGCTTCCEEECTTSC
T ss_pred             CCCCCCEEECCCC-ccCcChhhcCCCCCCEEEccCCc
Confidence            4556666666665 55555555556666666666554

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.73  E-value=1.6e-16  Score=151.08  Aligned_cols=115  Identities=19%  Similarity=0.195  Sum_probs=74.5

Q ss_pred             ccccccEEEecCCCCCCcc--ccccCCCCccEEEEeccCCchhhcccCCCCCCCccccccccCCcccEEeccCCCCccee
Q 048462          182 CFRNLRHLSVKTCPCMTDL--KWIRYAPNLQFLYVSYCPRLSEIIGTYESPGTSEIEESQDFFSNLMVIDLRHLPSLTSI  259 (325)
Q Consensus       182 ~~~~L~~L~l~~~~~l~~l--~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~  259 (325)
                      .+++|+.|+++++.....+  ..+..+++|++|++++|. ++.+.           +..+..+++|++|++++| +++.+
T Consensus       467 ~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~-L~~l~-----------~~~f~~l~~L~~L~Ls~N-~l~~l  533 (635)
T 4g8a_A          467 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLS-----------PTAFNSLSSLQVLNMSHN-NFFSL  533 (635)
T ss_dssp             TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEEC-----------TTTTTTCTTCCEEECTTS-CCCBC
T ss_pred             cchhhhhhhhhhcccccccCchhhhhccccCEEECCCCc-cCCcC-----------hHHHcCCCCCCEEECCCC-cCCCC
Confidence            4567777777776333332  245667888888888885 33332           246788999999999997 67766


Q ss_pred             ccC-cccCCCccEEeeeCCCCCCCCC-CCCCCcccceeEE-------echHHHHhhcccC
Q 048462          260 CCG-VVPFPSLQTISVNGCPSLRKLP-LNSGSAKNSLNAI-------RGSREWWDRLEWE  310 (325)
Q Consensus       260 ~~~-~~~~~~L~~L~l~~c~~l~~ip-~~~~~~~~~l~~~-------~~~~~~~~~~~~~  310 (325)
                      +.. ...+++|+.|+++++ +|+.++ ..+..+...+..+       .|+++...-.+|-
T Consensus       534 ~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~~~~~wl  592 (635)
T 4g8a_A          534 DTFPYKCLNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWI  592 (635)
T ss_dssp             CCGGGTTCTTCCEEECTTS-CCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGGHHHHHHH
T ss_pred             ChhHHhCCCCCCEEECCCC-cCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCcHHHHHHH
Confidence            543 446899999999987 777664 4444443344443       3555543344554

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.73  E-value=9.5e-17  Score=136.72  Aligned_cols=177  Identities=21%  Similarity=0.295  Sum_probs=136.1

Q ss_pred             CCCcEEecCCCCCCCcCc-hhhhCcccCceecCCCCcccccChhh-hccccCceeeccCCCCCeeechhhhhCCCcccEE
Q 048462            2 HALAVLDLSYNLDLVKLP-EAIGKLINLCYLNLSNTRIGQLPTGI-TYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVF   79 (325)
Q Consensus         2 ~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~l~~lp~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L   79 (325)
                      +++++|++++| .++.++ ..+.++++|++|++++|.++.+|..+ .++++|++|++++|.+. .++...+..+++|++|
T Consensus        37 ~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L  114 (270)
T 2o6q_A           37 ADTKKLDLQSN-KLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAEL  114 (270)
T ss_dssp             TTCSEEECCSS-CCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCC-CCCTTTTTTCSSCCEE
T ss_pred             CCCCEEECcCC-CCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCC-cCCHhHcccccCCCEE
Confidence            46899999999 788886 47999999999999999998888764 78999999999997655 4554437899999999


Q ss_pred             EecccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccccccCCCCCeEE
Q 048462           80 SWFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPLDLRMDHLETLE  159 (325)
Q Consensus        80 ~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~l~~L~~L~  159 (325)
                      ++++|.+       ....+..+..+++|+.|++++|....++.                        ..+..+++|+.|+
T Consensus       115 ~l~~n~l-------~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~------------------------~~~~~l~~L~~L~  163 (270)
T 2o6q_A          115 RLDRNQL-------KSLPPRVFDSLTKLTYLSLGYNELQSLPK------------------------GVFDKLTSLKELR  163 (270)
T ss_dssp             ECCSSCC-------CCCCTTTTTTCTTCCEEECCSSCCCCCCT------------------------TTTTTCTTCCEEE
T ss_pred             ECCCCcc-------CeeCHHHhCcCcCCCEEECCCCcCCccCH------------------------hHccCCcccceeE
Confidence            9999988       45555667889999999998886554321                        1145678888888


Q ss_pred             EcCCCCceeccccCCCCCccccccccccEEEecCCCCCCcccc--ccCCCCccEEEEeccCC
Q 048462          160 IDRCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDLKW--IRYAPNLQFLYVSYCPR  219 (325)
Q Consensus       160 l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~--~~~~~~L~~L~l~~~~~  219 (325)
                      +++|......     ...+  ..+++|++|+++++ .++.++.  +..+++|+.|++++|+.
T Consensus       164 L~~n~l~~~~-----~~~~--~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~  217 (270)
T 2o6q_A          164 LYNNQLKRVP-----EGAF--DKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQENPW  217 (270)
T ss_dssp             CCSSCCSCCC-----TTTT--TTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             ecCCcCcEeC-----hhHh--ccCCCcCEEECCCC-cCCcCCHHHhccccCCCEEEecCCCe
Confidence            8888754211     1111  35788999999888 7777653  56688899999888863

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.72  E-value=1.9e-16  Score=136.20  Aligned_cols=195  Identities=17%  Similarity=0.143  Sum_probs=93.7

Q ss_pred             CcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEecccceeeeeeccCccchhhhcc
Q 048462           24 KLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLAELES  103 (325)
Q Consensus        24 ~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~  103 (325)
                      +++++++++++++.++++|..+.  ++++.|++++|.+....+.. +..+++|++|++++|.+       . ..+. ...
T Consensus         8 ~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~-~~~l~~L~~L~L~~n~l-------~-~~~~-~~~   75 (290)
T 1p9a_G            8 KVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLAT-LMPYTRLTQLNLDRAEL-------T-KLQV-DGT   75 (290)
T ss_dssp             CSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGG-GTTCTTCCEEECTTSCC-------C-EEEC-CSC
T ss_pred             ccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHH-hhcCCCCCEEECCCCcc-------C-cccC-CCC
Confidence            34444555554444444444332  34455555554433333333 44455555555555444       1 1111 133


Q ss_pred             CCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccc--cccCCCCCeEEEcCCCCceeccccCCCCCcccc
Q 048462          104 LENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPL--DLRMDHLETLEIDRCSLESKNDYFGDQGRTRTY  181 (325)
Q Consensus       104 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~--l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~  181 (325)
                      +++|+.|++++|....++...   ....+|+.|+++++....++.  +..+++|++|++++|......     .+.+  .
T Consensus        76 l~~L~~L~Ls~N~l~~l~~~~---~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~-----~~~~--~  145 (290)
T 1p9a_G           76 LPVLGTLDLSHNQLQSLPLLG---QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP-----PGLL--T  145 (290)
T ss_dssp             CTTCCEEECCSSCCSSCCCCT---TTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCC-----TTTT--T
T ss_pred             CCcCCEEECCCCcCCcCchhh---ccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccC-----hhhc--c
Confidence            444444444444433222110   111123333333322222322  556777777777777653111     0111  3


Q ss_pred             ccccccEEEecCCCCCCcccc--ccCCCCccEEEEeccCCchhhcccCCCCCCCccccccccCCcccEEeccCCC
Q 048462          182 CFRNLRHLSVKTCPCMTDLKW--IRYAPNLQFLYVSYCPRLSEIIGTYESPGTSEIEESQDFFSNLMVIDLRHLP  254 (325)
Q Consensus       182 ~~~~L~~L~l~~~~~l~~l~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  254 (325)
                      .+++|+.|+++++ +++.++.  +..+++|++|++++|.. +.+.            ..+...++|+.+++.+++
T Consensus       146 ~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~L~~N~l-~~ip------------~~~~~~~~L~~l~L~~Np  206 (290)
T 1p9a_G          146 PTPKLEKLSLANN-NLTELPAGLLNGLENLDTLLLQENSL-YTIP------------KGFFGSHLLPFAFLHGNP  206 (290)
T ss_dssp             TCTTCCEEECTTS-CCSCCCTTTTTTCTTCCEEECCSSCC-CCCC------------TTTTTTCCCSEEECCSCC
T ss_pred             cccCCCEEECCCC-cCCccCHHHhcCcCCCCEEECCCCcC-CccC------------hhhcccccCCeEEeCCCC
Confidence            4667777777777 6666653  44577777777777752 2222            344555677777777653

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.72  E-value=2.8e-17  Score=137.44  Aligned_cols=197  Identities=15%  Similarity=0.128  Sum_probs=136.6

Q ss_pred             CCCcEEecCCCCCCCcCch-hhhCcccCceecCCCCc-ccccCh-hhhccccCceeeccCCCCCeeechhhhhCCCcccE
Q 048462            2 HALAVLDLSYNLDLVKLPE-AIGKLINLCYLNLSNTR-IGQLPT-GITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQV   78 (325)
Q Consensus         2 ~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~-l~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~   78 (325)
                      ++|++|++++| .++.+|. .+..+++|++|++++|. ++.++. .+.++++|++|++++|+....++...+..+++|++
T Consensus        31 ~~l~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~  109 (239)
T 2xwt_C           31 PSTQTLKLIET-HLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF  109 (239)
T ss_dssp             TTCCEEEEESC-CCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred             CcccEEEEeCC-cceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence            46899999999 8998865 78899999999999997 888876 57899999999999844445566433889999999


Q ss_pred             EEecccceeeeeeccCccchhhhccCCCcc---eEEEEec-CcccccccccCccccCCceEEEEceeeeecccccccCCC
Q 048462           79 FSWFSTELVELHYVDSTSVLAELESLENIH---DISVTLC-NVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPLDLRMDH  154 (325)
Q Consensus        79 L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~---~L~l~~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~l~~  154 (325)
                      |++++|.+       . .++. +..+++|+   .|++++| ....++.                        ..+..+++
T Consensus       110 L~l~~n~l-------~-~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~------------------------~~~~~l~~  156 (239)
T 2xwt_C          110 LGIFNTGL-------K-MFPD-LTKVYSTDIFFILEITDNPYMTSIPV------------------------NAFQGLCN  156 (239)
T ss_dssp             EEEEEECC-------C-SCCC-CTTCCBCCSEEEEEEESCTTCCEECT------------------------TTTTTTBS
T ss_pred             EeCCCCCC-------c-cccc-cccccccccccEEECCCCcchhhcCc------------------------ccccchhc
Confidence            99999987       2 2333 66666666   8888887 5443321                        11446667


Q ss_pred             CC-eEEEcCCCCceeccccCCCCCccccccccccEEEecCCCCCCccc--cccCC-CCccEEEEeccCCchhhcccCCCC
Q 048462          155 LE-TLEIDRCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDLK--WIRYA-PNLQFLYVSYCPRLSEIIGTYESP  230 (325)
Q Consensus       155 L~-~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~--~~~~~-~~L~~L~l~~~~~l~~~~~~~~~~  230 (325)
                      |+ .|++++|....+..     ..+   ..++|++|++++++.++.++  .+..+ ++|+.|++++|.. +.+..     
T Consensus       157 L~~~L~l~~n~l~~i~~-----~~~---~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l-~~l~~-----  222 (239)
T 2xwt_C          157 ETLTLKLYNNGFTSVQG-----YAF---NGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSV-TALPS-----  222 (239)
T ss_dssp             SEEEEECCSCCCCEECT-----TTT---TTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCC-CCCCC-----
T ss_pred             ceeEEEcCCCCCcccCH-----hhc---CCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcc-ccCCh-----
Confidence            77 77777776532211     111   12577888887774466653  34556 7788888877652 33221     


Q ss_pred             CCCccccccccCCcccEEeccCCCC
Q 048462          231 GTSEIEESQDFFSNLMVIDLRHLPS  255 (325)
Q Consensus       231 ~~~~~~~~~~~~~~L~~L~l~~~~~  255 (325)
                               ..|++|+.|.+.++..
T Consensus       223 ---------~~~~~L~~L~l~~~~~  238 (239)
T 2xwt_C          223 ---------KGLEHLKELIARNTWT  238 (239)
T ss_dssp             ---------TTCTTCSEEECTTC--
T ss_pred             ---------hHhccCceeeccCccC
Confidence                     2677788888777643

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.72  E-value=1e-16  Score=138.03  Aligned_cols=170  Identities=17%  Similarity=0.213  Sum_probs=98.8

Q ss_pred             hCcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEecccceeeeeeccCccchhhhc
Q 048462           23 GKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLAELE  102 (325)
Q Consensus        23 ~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~  102 (325)
                      ..+++|++|++++|.++.++. +..+++|++|++++|.+.. ++.  +..+++|++|++++|.+       ..  +..+.
T Consensus        43 ~~l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~-~~~--l~~l~~L~~L~l~~n~l-------~~--~~~l~  109 (291)
T 1h6t_A           43 NELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTD-IKP--LANLKNLGWLFLDENKV-------KD--LSSLK  109 (291)
T ss_dssp             HHHHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCC-------CC--GGGGT
T ss_pred             hhcCcccEEEccCCCcccChh-HhcCCCCCEEEccCCccCC-Ccc--cccCCCCCEEECCCCcC-------CC--Chhhc
Confidence            345556666666655555532 5555666666665543332 332  45556666666666554       11  22355


Q ss_pred             cCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccccccCCCCCeEEEcCCCCceeccccCCCCCccccc
Q 048462          103 SLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPLDLRMDHLETLEIDRCSLESKNDYFGDQGRTRTYC  182 (325)
Q Consensus       103 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~  182 (325)
                      .+++|+.|++++|....++.+..    ..+|+.|+++++....++.+..+++|+.|++++|...+         ..+...
T Consensus       110 ~l~~L~~L~L~~n~i~~~~~l~~----l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~---------~~~l~~  176 (291)
T 1h6t_A          110 DLKKLKSLSLEHNGISDINGLVH----LPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISD---------IVPLAG  176 (291)
T ss_dssp             TCTTCCEEECTTSCCCCCGGGGG----CTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCC---------CGGGTT
T ss_pred             cCCCCCEEECCCCcCCCChhhcC----CCCCCEEEccCCcCCcchhhccCCCCCEEEccCCcccc---------chhhcC
Confidence            55566666665555444322211    12345555554444344456677888888888887532         112256


Q ss_pred             cccccEEEecCCCCCCccccccCCCCccEEEEeccCC
Q 048462          183 FRNLRHLSVKTCPCMTDLKWIRYAPNLQFLYVSYCPR  219 (325)
Q Consensus       183 ~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~  219 (325)
                      +++|++|+++++ .+++++.+..+++|+.|++++|+.
T Consensus       177 l~~L~~L~L~~N-~i~~l~~l~~l~~L~~L~l~~n~i  212 (291)
T 1h6t_A          177 LTKLQNLYLSKN-HISDLRALAGLKNLDVLELFSQEC  212 (291)
T ss_dssp             CTTCCEEECCSS-CCCBCGGGTTCTTCSEEEEEEEEE
T ss_pred             CCccCEEECCCC-cCCCChhhccCCCCCEEECcCCcc
Confidence            778888888888 778777777888888888888753

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.71  E-value=4.7e-16  Score=137.44  Aligned_cols=236  Identities=13%  Similarity=0.115  Sum_probs=169.0

Q ss_pred             cEEecCCCCCCCcCchhhhCcccCceecCCCCcccccChh-hhccccCceeeccCCCCCeeechhhhhCCCcccEE-Eec
Q 048462            5 AVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTG-ITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVF-SWF   82 (325)
Q Consensus         5 ~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L-~l~   82 (325)
                      ++++-+++ .++++|..+.  +++++|++++|+++.+|.. +.++++|++|++++|.+.+.++..++.++++++++ .+.
T Consensus        12 ~~v~C~~~-~Lt~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~   88 (350)
T 4ay9_X           12 RVFLCQES-KVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   88 (350)
T ss_dssp             TEEEEEST-TCCSCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred             CEEEecCC-CCCccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence            56777777 7899997663  6899999999999999875 78999999999999888888886657889988764 445


Q ss_pred             ccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEcee-eeecccc--cccC-CCCCeE
Q 048462           83 STELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLM-ASFLLPL--DLRM-DHLETL  158 (325)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~l~~--l~~l-~~L~~L  158 (325)
                      .+.+       ....+..+..+++|+.|++.+|....++........  .+..+++.+. ....++.  +..+ ..++.|
T Consensus        89 ~N~l-------~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~--~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L  159 (350)
T 4ay9_X           89 ANNL-------LYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSL--QKVLLDIQDNINIHTIERNSFVGLSFESVIL  159 (350)
T ss_dssp             ETTC-------CEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBS--SCEEEEEESCTTCCEECTTSSTTSBSSCEEE
T ss_pred             CCcc-------cccCchhhhhccccccccccccccccCCchhhcccc--hhhhhhhccccccccccccchhhcchhhhhh
Confidence            5666       344466788999999999999988776554333222  3566777543 2223333  4444 367888


Q ss_pred             EEcCCCCceeccccCCCCCccccccccccEEEecCCCCCCcccc--ccCCCCccEEEEeccCCchhhcccCCCCCCCccc
Q 048462          159 EIDRCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDLKW--IRYAPNLQFLYVSYCPRLSEIIGTYESPGTSEIE  236 (325)
Q Consensus       159 ~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~  236 (325)
                      ++++|...++..     +.   ....+|+++++.++..++.++.  +..+++|++|++++|. ++.+..           
T Consensus       160 ~L~~N~i~~i~~-----~~---f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~-l~~lp~-----------  219 (350)
T 4ay9_X          160 WLNKNGIQEIHN-----SA---FNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR-IHSLPS-----------  219 (350)
T ss_dssp             ECCSSCCCEECT-----TS---STTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSC-CCCCCS-----------
T ss_pred             ccccccccCCCh-----hh---ccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCC-cCccCh-----------
Confidence            888887643221     11   2345788888887667887763  5678888999988885 444322           


Q ss_pred             cccccCCcccEEeccCCCCcceeccCcccCCCccEEeeeC
Q 048462          237 ESQDFFSNLMVIDLRHLPSLTSICCGVVPFPSLQTISVNG  276 (325)
Q Consensus       237 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~  276 (325)
                         +.+.+|+.|.+.++..++.+|. ...+++|+.+++.+
T Consensus       220 ---~~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~  255 (350)
T 4ay9_X          220 ---YGLENLKKLRARSTYNLKKLPT-LEKLVALMEASLTY  255 (350)
T ss_dssp             ---SSCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSC
T ss_pred             ---hhhccchHhhhccCCCcCcCCC-chhCcChhhCcCCC
Confidence               3467777887777777887775 45688888888854

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.71  E-value=1e-18  Score=156.63  Aligned_cols=252  Identities=14%  Similarity=0.137  Sum_probs=174.2

Q ss_pred             CCCCcEEecCCCCCCCc-----CchhhhCcccCceecCCCCccc----ccChhh-------hccccCceeeccCCCCCe-
Q 048462            1 MHALAVLDLSYNLDLVK-----LPEAIGKLINLCYLNLSNTRIG----QLPTGI-------TYLKNLKILRLDGMRYLA-   63 (325)
Q Consensus         1 ~~~L~~L~l~~~~~~~~-----lp~~~~~l~~L~~L~l~~~~l~----~lp~~l-------~~l~~L~~L~l~~~~~~~-   63 (325)
                      +++|++|++++| .++.     ++..+..+++|++|++++|.+.    .+|.++       .++++|++|++++|.+.. 
T Consensus        31 ~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~  109 (386)
T 2ca6_A           31 DDSVKEIVLSGN-TIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT  109 (386)
T ss_dssp             CSCCCEEECTTS-EECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTT
T ss_pred             CCCccEEECCCC-CCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHH
Confidence            478999999999 6764     3344678999999999997543    445554       689999999999987766 


Q ss_pred             ---eechhhhhCCCcccEEEecccceeeeeeccCcc----chhhhccC---------CCcceEEEEecCcc--ccccccc
Q 048462           64 ---FVPCQVISSLSSLQVFSWFSTELVELHYVDSTS----VLAELESL---------ENIHDISVTLCNVD--AVNRVKS  125 (325)
Q Consensus        64 ---~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~----~~~~l~~l---------~~L~~L~l~~~~~~--~~~~~~~  125 (325)
                         .++.. +..+++|++|++++|.+       ...    +...+..+         ++|+.|++++|...  .++.+..
T Consensus       110 ~~~~l~~~-l~~~~~L~~L~L~~n~l-------~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~  181 (386)
T 2ca6_A          110 AQEPLIDF-LSKHTPLEHLYLHNNGL-------GPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK  181 (386)
T ss_dssp             THHHHHHH-HHHCTTCCEEECCSSCC-------HHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHH
T ss_pred             HHHHHHHH-HHhCCCCCEEECcCCCC-------CHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHH
Confidence               46666 89999999999999987       322    23334444         89999999999875  3333322


Q ss_pred             CccccCCceEEEEceeeee------ccc-ccccCCCCCeEEEcCCCCceeccccCCCCCccc--cccccccEEEecCCCC
Q 048462          126 SPKLQSCIKRLAVVLMASF------LLP-LDLRMDHLETLEIDRCSLESKNDYFGDQGRTRT--YCFRNLRHLSVKTCPC  196 (325)
Q Consensus       126 ~~~~~~~L~~L~l~~~~~~------~l~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~  196 (325)
                      ......+|++|+++++...      ..+ .+..+++|+.|++++|...+...     ..++.  ..+++|++|++++| .
T Consensus       182 ~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~-----~~l~~~l~~~~~L~~L~L~~n-~  255 (386)
T 2ca6_A          182 TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGS-----SALAIALKSWPNLRELGLNDC-L  255 (386)
T ss_dssp             HHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHH-----HHHHHHGGGCTTCCEEECTTC-C
T ss_pred             HHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHH-----HHHHHHHccCCCcCEEECCCC-C
Confidence            2233447999999976544      344 57889999999999998631110     11221  46789999999999 6


Q ss_pred             CCcc------ccc--cCCCCccEEEEeccCCchhhcccCCCCCCCcccccc-ccCCcccEEeccCCCCcceec---cCcc
Q 048462          197 MTDL------KWI--RYAPNLQFLYVSYCPRLSEIIGTYESPGTSEIEESQ-DFFSNLMVIDLRHLPSLTSIC---CGVV  264 (325)
Q Consensus       197 l~~l------~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~l~~~~---~~~~  264 (325)
                      +++.      ..+  ..+++|++|++++|..-....        ..++..+ ..+++|++|++.+|+--...+   ....
T Consensus       256 i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~--------~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~  327 (386)
T 2ca6_A          256 LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAV--------RTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIRE  327 (386)
T ss_dssp             CCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHH--------HHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHH
T ss_pred             CchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHH--------HHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHH
Confidence            7764      233  348999999999997544200        0112344 568999999999984322221   1112


Q ss_pred             cCCCccEEeee
Q 048462          265 PFPSLQTISVN  275 (325)
Q Consensus       265 ~~~~L~~L~l~  275 (325)
                      .+++++..++.
T Consensus       328 ~l~~~~~~~l~  338 (386)
T 2ca6_A          328 VFSTRGRGELD  338 (386)
T ss_dssp             HHHHHTCCEEC
T ss_pred             HhhhcCcchhh
Confidence            35666655553

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.71  E-value=3.6e-16  Score=134.53  Aligned_cols=195  Identities=15%  Similarity=0.120  Sum_probs=154.1

Q ss_pred             CCCCcEEecCCCCCCCcCchhhhCcccCceecCCCCccccc-ChhhhccccCceeeccCCCCCeeechhhhhCCCcccEE
Q 048462            1 MHALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQL-PTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVF   79 (325)
Q Consensus         1 ~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~l-p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L   79 (325)
                      +++++.++++++ .++.+|..+.  +++++|++++|.++.+ +..+.++++|++|++++|.+. .++.  .+.+++|+.|
T Consensus         9 l~~l~~l~~~~~-~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~--~~~l~~L~~L   82 (290)
T 1p9a_G            9 VASHLEVNCDKR-NLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQV--DGTLPVLGTL   82 (290)
T ss_dssp             STTCCEEECTTS-CCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEEC--CSCCTTCCEE
T ss_pred             cCCccEEECCCC-CCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-cccC--CCCCCcCCEE
Confidence            468999999999 8999987665  6899999999999766 456899999999999997654 4554  4789999999


Q ss_pred             EecccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccc--cccCCCCCe
Q 048462           80 SWFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPL--DLRMDHLET  157 (325)
Q Consensus        80 ~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~--l~~l~~L~~  157 (325)
                      ++++|.+        ..++..+..+++|+.|++++|....++...  .....+|+.|+++++....++.  +..+++|+.
T Consensus        83 ~Ls~N~l--------~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~--~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  152 (290)
T 1p9a_G           83 DLSHNQL--------QSLPLLGQTLPALTVLDVSFNRLTSLPLGA--LRGLGELQELYLKGNELKTLPPGLLTPTPKLEK  152 (290)
T ss_dssp             ECCSSCC--------SSCCCCTTTCTTCCEEECCSSCCCCCCSST--TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred             ECCCCcC--------CcCchhhccCCCCCEEECCCCcCcccCHHH--HcCCCCCCEEECCCCCCCccChhhcccccCCCE
Confidence            9999987        356667888999999999999887654211  1223469999999877666666  778999999


Q ss_pred             EEEcCCCCceeccccCCCCCccccccccccEEEecCCCCCCccc-cccCCCCccEEEEeccCC
Q 048462          158 LEIDRCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDLK-WIRYAPNLQFLYVSYCPR  219 (325)
Q Consensus       158 L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~~~~~~~L~~L~l~~~~~  219 (325)
                      |++++|......     .+.+  ..+++|++|+++++ .++.++ .+...++|+.|++.+|+.
T Consensus       153 L~L~~N~l~~l~-----~~~~--~~l~~L~~L~L~~N-~l~~ip~~~~~~~~L~~l~L~~Np~  207 (290)
T 1p9a_G          153 LSLANNNLTELP-----AGLL--NGLENLDTLLLQEN-SLYTIPKGFFGSHLLPFAFLHGNPW  207 (290)
T ss_dssp             EECTTSCCSCCC-----TTTT--TTCTTCCEEECCSS-CCCCCCTTTTTTCCCSEEECCSCCB
T ss_pred             EECCCCcCCccC-----HHHh--cCcCCCCEEECCCC-cCCccChhhcccccCCeEEeCCCCc
Confidence            999999864221     1111  45789999999999 788775 455678999999999874

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.70  E-value=1.5e-17  Score=141.89  Aligned_cols=200  Identities=14%  Similarity=0.194  Sum_probs=135.8

Q ss_pred             CCCcEEecCCCCCCCcCchhhhCcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEe
Q 048462            2 HALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSW   81 (325)
Q Consensus         2 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l   81 (325)
                      ++|+.|+++++ .++.++ .+..+++|++|++++|.++.++ .+.++++|++|++++|.+....+.. +..+++|++|++
T Consensus        41 ~~L~~L~l~~~-~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L  116 (272)
T 3rfs_A           41 NSIDQIIANNS-DIKSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGV-FDKLTNLKELVL  116 (272)
T ss_dssp             TTCCEEECTTS-CCCCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTT-TTTCTTCCEEEC
T ss_pred             cceeeeeeCCC-Cccccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhH-hcCCcCCCEEEC
Confidence            57888888888 677664 4777888888888888877664 5778888888888886655443443 678888888888


Q ss_pred             cccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccccccCCCCCeEEEc
Q 048462           82 FSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPLDLRMDHLETLEID  161 (325)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~l~~L~~L~l~  161 (325)
                      ++|.+       ....+..+..+++|+.|++++|....++.                        ..+..+++|+.|+++
T Consensus       117 ~~n~l-------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~------------------------~~~~~l~~L~~L~l~  165 (272)
T 3rfs_A          117 VENQL-------QSLPDGVFDKLTNLTYLNLAHNQLQSLPK------------------------GVFDKLTNLTELDLS  165 (272)
T ss_dssp             TTSCC-------CCCCTTTTTTCTTCCEEECCSSCCCCCCT------------------------TTTTTCTTCCEEECC
T ss_pred             CCCcC-------CccCHHHhccCCCCCEEECCCCccCccCH------------------------HHhccCccCCEEECC
Confidence            88877       44444456777888888887775443211                        113467788888888


Q ss_pred             CCCCceeccccCCCCCccccccccccEEEecCCCCCCcccc--ccCCCCccEEEEeccCCchhhcccCCCCCCCcccccc
Q 048462          162 RCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDLKW--IRYAPNLQFLYVSYCPRLSEIIGTYESPGTSEIEESQ  239 (325)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~  239 (325)
                      +|......     ...+  ..+++|++|+++++ .++.++.  +..+++|++|++.+|+                   ..
T Consensus       166 ~n~l~~~~-----~~~~--~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~-------------------~~  218 (272)
T 3rfs_A          166 YNQLQSLP-----EGVF--DKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNP-------------------WD  218 (272)
T ss_dssp             SSCCCCCC-----TTTT--TTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC-------------------BC
T ss_pred             CCCcCccC-----HHHh--cCCccCCEEECCCC-cCCccCHHHHhCCcCCCEEEccCCC-------------------cc
Confidence            88753111     0111  45678888888888 6776543  5678888888888875                   33


Q ss_pred             ccCCcccEEeccCCCCcceeccCc
Q 048462          240 DFFSNLMVIDLRHLPSLTSICCGV  263 (325)
Q Consensus       240 ~~~~~L~~L~l~~~~~l~~~~~~~  263 (325)
                      +.+++|+.|++..+.....+|...
T Consensus       219 ~~~~~l~~l~~~~n~~~g~ip~~~  242 (272)
T 3rfs_A          219 CTCPGIRYLSEWINKHSGVVRNSA  242 (272)
T ss_dssp             CCTTTTHHHHHHHHHTGGGBBCTT
T ss_pred             ccCcHHHHHHHHHHhCCCcccCcc
Confidence            456777777777654444455443

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.70  E-value=1e-17  Score=145.67  Aligned_cols=222  Identities=14%  Similarity=0.057  Sum_probs=143.0

Q ss_pred             CCcEEecCCCCCCCc--Cch--hhhCcccCceecCCCCccc-ccChhh--hccccCceeeccCCCCCeeec----hhhhh
Q 048462            3 ALAVLDLSYNLDLVK--LPE--AIGKLINLCYLNLSNTRIG-QLPTGI--TYLKNLKILRLDGMRYLAFVP----CQVIS   71 (325)
Q Consensus         3 ~L~~L~l~~~~~~~~--lp~--~~~~l~~L~~L~l~~~~l~-~lp~~l--~~l~~L~~L~l~~~~~~~~~~----~~~~~   71 (325)
                      .++.+.+.++ .++.  +..  .+..+.+|++|++++|.+. ..|..+  .++++|++|++++|.+....+    .. +.
T Consensus        65 ~l~~l~l~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~-~~  142 (310)
T 4glp_A           65 RVRRLTVGAA-QVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQ-QW  142 (310)
T ss_dssp             CCCEEEECSC-CCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHH-TT
T ss_pred             ceeEEEEeCC-cCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHH-hh
Confidence            3566777776 4442  111  1223566888888888774 555555  778888888888876665333    22 45


Q ss_pred             CCCcccEEEecccceeeeeeccCccchhhhccCCCcceEEEEecCccccccccc--CccccCCceEEEEceeeeecccc-
Q 048462           72 SLSSLQVFSWFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKS--SPKLQSCIKRLAVVLMASFLLPL-  148 (325)
Q Consensus        72 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~l~~-  148 (325)
                      .+++|++|++++|.+       ....+..+..+++|+.|++++|...+...+..  ......+|++|+++++....++. 
T Consensus       143 ~~~~L~~L~Ls~n~l-------~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~  215 (310)
T 4glp_A          143 LKPGLKVLSIAQAHS-------PAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGV  215 (310)
T ss_dssp             BCSCCCEEEEECCSS-------CCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHH
T ss_pred             hccCCCEEEeeCCCc-------chhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHH
Confidence            688888888888877       45555677788888888888887544222111  11122357888888665544443 


Q ss_pred             ----cccCCCCCeEEEcCCCCceeccccCCCCCccc-cccccccEEEecCCCCCCccccccCCCCccEEEEeccCCchhh
Q 048462          149 ----DLRMDHLETLEIDRCSLESKNDYFGDQGRTRT-YCFRNLRHLSVKTCPCMTDLKWIRYAPNLQFLYVSYCPRLSEI  223 (325)
Q Consensus       149 ----l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~  223 (325)
                          +..+++|++|++++|......     +..+.. ..+++|++|+++++ .++.++... +++|++|++++|.. +.+
T Consensus       216 ~~~l~~~l~~L~~L~Ls~N~l~~~~-----p~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~-~~~L~~L~Ls~N~l-~~~  287 (310)
T 4glp_A          216 CAALAAAGVQPHSLDLSHNSLRATV-----NPSAPRCMWSSALNSLNLSFA-GLEQVPKGL-PAKLRVLDLSSNRL-NRA  287 (310)
T ss_dssp             HHHHHHHTCCCSSEECTTSCCCCCC-----CSCCSSCCCCTTCCCEECCSS-CCCSCCSCC-CSCCSCEECCSCCC-CSC
T ss_pred             HHHHHhcCCCCCEEECCCCCCCccc-----hhhHHhccCcCcCCEEECCCC-CCCchhhhh-cCCCCEEECCCCcC-CCC
Confidence                357789999999998864211     011111 22378999999998 787775432 47899999998863 322


Q ss_pred             cccCCCCCCCccccccccCCcccEEeccCCC
Q 048462          224 IGTYESPGTSEIEESQDFFSNLMVIDLRHLP  254 (325)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  254 (325)
                      .             ....+++|+.|++++++
T Consensus       288 ~-------------~~~~l~~L~~L~L~~N~  305 (310)
T 4glp_A          288 P-------------QPDELPEVDNLTLDGNP  305 (310)
T ss_dssp             C-------------CTTSCCCCSCEECSSTT
T ss_pred             c-------------hhhhCCCccEEECcCCC
Confidence            1             34677899999999874

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.70  E-value=1.1e-18  Score=159.90  Aligned_cols=156  Identities=13%  Similarity=0.129  Sum_probs=95.9

Q ss_pred             CCCcEEecCCCCCCCcCc--hhhhCcccCceecCCCCccc-----ccChhhhccccCceeeccCCCCCeeechhhhhCCC
Q 048462            2 HALAVLDLSYNLDLVKLP--EAIGKLINLCYLNLSNTRIG-----QLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLS   74 (325)
Q Consensus         2 ~~L~~L~l~~~~~~~~lp--~~~~~l~~L~~L~l~~~~l~-----~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~   74 (325)
                      ++|++|+++++ .++..+  ..+..+++|++|++++|.++     .++..+..+++|++|++++|.+....+......++
T Consensus         3 ~~l~~L~Ls~~-~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~   81 (461)
T 1z7x_W            3 LDIQSLDIQCE-ELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ   81 (461)
T ss_dssp             EEEEEEEEESC-CCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred             ccceehhhhhc-ccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence            46778888877 566442  33667788888888888764     45666777788888888886654433333133454


Q ss_pred             ----cccEEEecccceeeeeeccCc----cchhhhccCCCcceEEEEecCcccc--cccccC-ccccCCceEEEEceeee
Q 048462           75 ----SLQVFSWFSTELVELHYVDST----SVLAELESLENIHDISVTLCNVDAV--NRVKSS-PKLQSCIKRLAVVLMAS  143 (325)
Q Consensus        75 ----~L~~L~l~~~~~~~~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~~~~--~~~~~~-~~~~~~L~~L~l~~~~~  143 (325)
                          +|++|++++|.+       ..    .++..+..+++|++|++++|.....  ..+... ......|++|+++++..
T Consensus        82 ~~~~~L~~L~L~~n~i-------~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l  154 (461)
T 1z7x_W           82 TPSCKIQKLSLQNCCL-------TGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSL  154 (461)
T ss_dssp             STTCCCCEEECTTSCC-------BGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred             hCCCceeEEEccCCCC-------CHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCC
Confidence                688888888876       22    3466677778888888877765431  111110 11122477777775543


Q ss_pred             ec-----ccc-cccCCCCCeEEEcCCCC
Q 048462          144 FL-----LPL-DLRMDHLETLEIDRCSL  165 (325)
Q Consensus       144 ~~-----l~~-l~~l~~L~~L~l~~~~~  165 (325)
                      ..     ++. +..+++|++|++++|..
T Consensus       155 ~~~~~~~l~~~l~~~~~L~~L~L~~n~i  182 (461)
T 1z7x_W          155 SAASCEPLASVLRAKPDFKELTVSNNDI  182 (461)
T ss_dssp             BGGGHHHHHHHHHHCTTCCEEECCSSBC
T ss_pred             CHHHHHHHHHHHhhCCCCCEEECcCCCc
Confidence            32     122 45567777777777764

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.69  E-value=1.4e-15  Score=144.50  Aligned_cols=114  Identities=25%  Similarity=0.292  Sum_probs=57.6

Q ss_pred             CCcEEecCCCCCCCcCc-hhhhCcccCceecCCCCcccccCh-hhhccccCceeeccCCCCCeeechhhhhCCCcccEEE
Q 048462            3 ALAVLDLSYNLDLVKLP-EAIGKLINLCYLNLSNTRIGQLPT-GITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFS   80 (325)
Q Consensus         3 ~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~   80 (325)
                      ++++|||++| .++.+| ..|.++++|++|++++|.++.++. .+.++++|++|++++|.+ ..+|...+.++++|++|+
T Consensus        53 ~~~~LdLs~N-~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l-~~l~~~~f~~L~~L~~L~  130 (635)
T 4g8a_A           53 STKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI-QSLALGAFSGLSSLQKLV  130 (635)
T ss_dssp             TCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC-CEECGGGGTTCTTCCEEE
T ss_pred             CCCEEEeeCC-CCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcC-CCCCHHHhcCCCCCCEEE
Confidence            4555666665 555553 345555666666666655555543 245555566666655432 333332255555555555


Q ss_pred             ecccceeee--------------ee----ccCccchhhhccCCCcceEEEEecCcc
Q 048462           81 WFSTELVEL--------------HY----VDSTSVLAELESLENIHDISVTLCNVD  118 (325)
Q Consensus        81 l~~~~~~~~--------------~~----~~~~~~~~~l~~l~~L~~L~l~~~~~~  118 (325)
                      +++|.+...              +.    ......+..+..+++|++|++++|...
T Consensus       131 Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~  186 (635)
T 4g8a_A          131 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ  186 (635)
T ss_dssp             CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred             CCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccc
Confidence            555544100              00    001123445566667777777666543

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.69  E-value=1.8e-18  Score=158.50  Aligned_cols=177  Identities=14%  Similarity=0.062  Sum_probs=84.2

Q ss_pred             hhhhccCCCcceEEEEecCccccc--cccc-CccccCCceEEEEceeeeec-----ccc-cccCCCCCeEEEcCCCCcee
Q 048462           98 LAELESLENIHDISVTLCNVDAVN--RVKS-SPKLQSCIKRLAVVLMASFL-----LPL-DLRMDHLETLEIDRCSLESK  168 (325)
Q Consensus        98 ~~~l~~l~~L~~L~l~~~~~~~~~--~~~~-~~~~~~~L~~L~l~~~~~~~-----l~~-l~~l~~L~~L~l~~~~~~~~  168 (325)
                      +..+..+++|++|++++|......  .+.. .......|+.|+++++....     ++. +..+++|++|++++|...+.
T Consensus       163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~  242 (461)
T 1z7x_W          163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV  242 (461)
T ss_dssp             HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred             HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence            334455566677766666543211  1110 00011246777777554332     233 55667777777777754321


Q ss_pred             ccccCCCCCccc--cccccccEEEecCCCCCCc-----c-ccccCCCCccEEEEeccCCchhhc----------------
Q 048462          169 NDYFGDQGRTRT--YCFRNLRHLSVKTCPCMTD-----L-KWIRYAPNLQFLYVSYCPRLSEII----------------  224 (325)
Q Consensus       169 ~~~~~~~~~~~~--~~~~~L~~L~l~~~~~l~~-----l-~~~~~~~~L~~L~l~~~~~l~~~~----------------  224 (325)
                      ...    ...+.  ..+++|++|++++| .+++     + ..+..+++|++|++++|..-+...                
T Consensus       243 ~~~----~l~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~  317 (461)
T 1z7x_W          243 GMA----ELCPGLLHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLES  317 (461)
T ss_dssp             HHH----HHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCE
T ss_pred             HHH----HHHHHHhcCCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCcccee
Confidence            100    00000  13566777777776 5554     1 123345666666666654211100                


Q ss_pred             --ccCCCCC---CCccccccccCCcccEEeccCCCCcceeccC-cc-----cCCCccEEeeeCCCCCC
Q 048462          225 --GTYESPG---TSEIEESQDFFSNLMVIDLRHLPSLTSICCG-VV-----PFPSLQTISVNGCPSLR  281 (325)
Q Consensus       225 --~~~~~~~---~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~-----~~~~L~~L~l~~c~~l~  281 (325)
                        ...+...   ...++..+..+++|+.|++++| .+.+.... ..     ..++|++|++++| .++
T Consensus       318 L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~  383 (461)
T 1z7x_W          318 LWVKSCSFTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADC-DVS  383 (461)
T ss_dssp             EECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCC
T ss_pred             eEcCCCCCchHHHHHHHHHHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCC-CCC
Confidence              0000000   0012234445677777777776 34332111 11     1568888888887 566

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.69  E-value=2e-17  Score=156.22  Aligned_cols=258  Identities=16%  Similarity=0.195  Sum_probs=128.8

Q ss_pred             CCCCcEEecCCCCCCC-----cCchhhhCcccCceecCCCCcccccChhhhccccCceeeccCCC---------------
Q 048462            1 MHALAVLDLSYNLDLV-----KLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMR---------------   60 (325)
Q Consensus         1 ~~~L~~L~l~~~~~~~-----~lp~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~---------------   60 (325)
                      +++|++|+++++ .++     .++..+..+++|++|++++|.+..+|..+.++++|++|+++...               
T Consensus       191 ~~~L~~L~L~~n-~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~  269 (592)
T 3ogk_B          191 NTSLEVLNFYMT-EFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFP  269 (592)
T ss_dssp             CCCCCEEECTTC-CCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCC
T ss_pred             CCCccEEEeecc-CCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhcc
Confidence            467777888777 454     33444566777777777777665555555556666655554211               


Q ss_pred             -----------CCeeechhhhhCCCcccEEEecccceeeeeeccCccch-hhhccCCCcceEEEEecCcccccccccCcc
Q 048462           61 -----------YLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVL-AELESLENIHDISVTLCNVDAVNRVKSSPK  128 (325)
Q Consensus        61 -----------~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~  128 (325)
                                 ....+|.. +..+++|++|++++|.+       ..... ..+..+++|+.|++.++ ... ..+.....
T Consensus       270 ~~L~~L~l~~~~~~~l~~~-~~~~~~L~~L~Ls~~~l-------~~~~~~~~~~~~~~L~~L~L~~~-~~~-~~l~~~~~  339 (592)
T 3ogk_B          270 RKLCRLGLSYMGPNEMPIL-FPFAAQIRKLDLLYALL-------ETEDHCTLIQKCPNLEVLETRNV-IGD-RGLEVLAQ  339 (592)
T ss_dssp             TTCCEEEETTCCTTTGGGG-GGGGGGCCEEEETTCCC-------CHHHHHHHHTTCTTCCEEEEEGG-GHH-HHHHHHHH
T ss_pred             ccccccCccccchhHHHHH-HhhcCCCcEEecCCCcC-------CHHHHHHHHHhCcCCCEEeccCc-cCH-HHHHHHHH
Confidence                       11223333 45566777777777664       22222 23455556666665522 111 11111111


Q ss_pred             ccCCceEEEEce----------eeeec---ccc-cccCCCCCeEEEcCCCCceecccc-------------------CC-
Q 048462          129 LQSCIKRLAVVL----------MASFL---LPL-DLRMDHLETLEIDRCSLESKNDYF-------------------GD-  174 (325)
Q Consensus       129 ~~~~L~~L~l~~----------~~~~~---l~~-l~~l~~L~~L~l~~~~~~~~~~~~-------------------~~-  174 (325)
                      .+++|++|++++          +..+.   ++. ...+++|++|++..+...+.....                   .. 
T Consensus       340 ~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l  419 (592)
T 3ogk_B          340 YCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERI  419 (592)
T ss_dssp             HCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCC
T ss_pred             hCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccc
Confidence            223355555552          22221   111 223444444444322221000000                   00 


Q ss_pred             CC-----Cccc--cccccccEEEecCCCC-CCc--cccc-cCCCCccEEEEeccCCchhhcccCCCCCCCccccccccCC
Q 048462          175 QG-----RTRT--YCFRNLRHLSVKTCPC-MTD--LKWI-RYAPNLQFLYVSYCPRLSEIIGTYESPGTSEIEESQDFFS  243 (325)
Q Consensus       175 ~~-----~~~~--~~~~~L~~L~l~~~~~-l~~--l~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  243 (325)
                      .+     .++.  ..+++|++|+++.|.+ +++  +..+ ..+++|++|++++|.. ++.          .++.....++
T Consensus       420 ~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l-~~~----------~~~~~~~~~~  488 (592)
T 3ogk_B          420 TDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGE-SDE----------GLMEFSRGCP  488 (592)
T ss_dssp             SSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCS-SHH----------HHHHHHTCCT
T ss_pred             cCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCC-CHH----------HHHHHHhcCc
Confidence            00     0000  3356666666655432 232  1112 2366777777776652 211          1223456789


Q ss_pred             cccEEeccCCCCcce--eccCcccCCCccEEeeeCCCCCCC
Q 048462          244 NLMVIDLRHLPSLTS--ICCGVVPFPSLQTISVNGCPSLRK  282 (325)
Q Consensus       244 ~L~~L~l~~~~~l~~--~~~~~~~~~~L~~L~l~~c~~l~~  282 (325)
                      +|++|++++|+ ++.  ++.....+++|+.|++++|. ++.
T Consensus       489 ~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~-it~  527 (592)
T 3ogk_B          489 NLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR-ASM  527 (592)
T ss_dssp             TCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB-CCT
T ss_pred             ccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc-CCH
Confidence            99999999996 443  23333458999999999995 664

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.68  E-value=7.6e-18  Score=149.69  Aligned_cols=78  Identities=12%  Similarity=0.059  Sum_probs=33.8

Q ss_pred             EecCCCCCCCcC-chhhhCcccCceecCCCCcccccC-----hhhhccc-cCceeeccCCCCCeeechhhhhCC-----C
Q 048462            7 LDLSYNLDLVKL-PEAIGKLINLCYLNLSNTRIGQLP-----TGITYLK-NLKILRLDGMRYLAFVPCQVISSL-----S   74 (325)
Q Consensus         7 L~l~~~~~~~~l-p~~~~~l~~L~~L~l~~~~l~~lp-----~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~l-----~   74 (325)
                      ++++++ .++.. |..+...++|++|++++|.++..+     ..+.+++ +|++|++++|.+....+.. +..+     +
T Consensus         3 ~~ls~n-~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~-l~~~l~~~~~   80 (362)
T 3goz_A            3 YKLTLH-PGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDE-LVQILAAIPA   80 (362)
T ss_dssp             EECCCC-TTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHH-HHHHHHTSCT
T ss_pred             cccccc-cchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHH-HHHHHhccCC
Confidence            344444 33322 333333333555555555544333     2344444 4555555554433322222 2222     5


Q ss_pred             cccEEEecccce
Q 048462           75 SLQVFSWFSTEL   86 (325)
Q Consensus        75 ~L~~L~l~~~~~   86 (325)
                      +|++|++++|.+
T Consensus        81 ~L~~L~Ls~n~l   92 (362)
T 3goz_A           81 NVTSLNLSGNFL   92 (362)
T ss_dssp             TCCEEECCSSCG
T ss_pred             CccEEECcCCcC
Confidence            555555555544

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.67  E-value=1.7e-16  Score=128.70  Aligned_cols=148  Identities=17%  Similarity=0.262  Sum_probs=80.9

Q ss_pred             hCcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEecccceeeeeeccCccchhhhc
Q 048462           23 GKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLAELE  102 (325)
Q Consensus        23 ~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~  102 (325)
                      +.+++|++|+++++.++.+| .+..+++|++|++++| ....++ . +..+++|++|++++|.+       ....+..+.
T Consensus        41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n-~~~~~~-~-l~~l~~L~~L~l~~n~l-------~~~~~~~l~  109 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNI-HATNYN-P-ISGLSNLERLRIMGKDV-------TSDKIPNLS  109 (197)
T ss_dssp             HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESC-CCSCCG-G-GTTCTTCCEEEEECTTC-------BGGGSCCCT
T ss_pred             hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCC-CCCcch-h-hhcCCCCCEEEeECCcc-------CcccChhhc
Confidence            44555555555555555555 4555555555555554 222222 2 55555555555555554       333344455


Q ss_pred             cCCCcceEEEEecCccc--ccccccCccccCCceEEEEceee-eecccccccCCCCCeEEEcCCCCceeccccCCCCCcc
Q 048462          103 SLENIHDISVTLCNVDA--VNRVKSSPKLQSCIKRLAVVLMA-SFLLPLDLRMDHLETLEIDRCSLESKNDYFGDQGRTR  179 (325)
Q Consensus       103 ~l~~L~~L~l~~~~~~~--~~~~~~~~~~~~~L~~L~l~~~~-~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~  179 (325)
                      .+++|+.|++++|....  ...+.    ....|+.|+++++. ...++.+..+++|+.|++++|...+         ..+
T Consensus       110 ~l~~L~~L~Ls~n~i~~~~~~~l~----~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~---------~~~  176 (197)
T 4ezg_A          110 GLTSLTLLDISHSAHDDSILTKIN----TLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHD---------YRG  176 (197)
T ss_dssp             TCTTCCEEECCSSBCBGGGHHHHT----TCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCC---------CTT
T ss_pred             CCCCCCEEEecCCccCcHhHHHHh----hCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcC---------hHH
Confidence            55555555555555443  11111    11235555555544 3445556777888888888877532         112


Q ss_pred             ccccccccEEEecCC
Q 048462          180 TYCFRNLRHLSVKTC  194 (325)
Q Consensus       180 ~~~~~~L~~L~l~~~  194 (325)
                      ...+++|++|+++++
T Consensus       177 l~~l~~L~~L~l~~N  191 (197)
T 4ezg_A          177 IEDFPKLNQLYAFSQ  191 (197)
T ss_dssp             GGGCSSCCEEEECBC
T ss_pred             hccCCCCCEEEeeCc
Confidence            256778888888877

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.66  E-value=5.2e-16  Score=146.21  Aligned_cols=171  Identities=18%  Similarity=0.225  Sum_probs=101.5

Q ss_pred             hhCcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEecccceeeeeeccCccchhhh
Q 048462           22 IGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLAEL  101 (325)
Q Consensus        22 ~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l  101 (325)
                      +..+.+|++|++++|.+..++ .+..+++|+.|++++|.+.. ++.  +..+++|+.|++++|.+       ..  +..+
T Consensus        39 ~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~-~~~--l~~l~~L~~L~Ls~N~l-------~~--l~~l  105 (605)
T 1m9s_A           39 QNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTD-IKP--LTNLKNLGWLFLDENKI-------KD--LSSL  105 (605)
T ss_dssp             HHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCC-CGG--GGGCTTCCEEECCSSCC-------CC--CTTS
T ss_pred             hhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCC-Chh--hccCCCCCEEECcCCCC-------CC--Chhh
Confidence            345556666666666555554 35556666666666644332 332  55566666666666655       11  2245


Q ss_pred             ccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccccccCCCCCeEEEcCCCCceeccccCCCCCcccc
Q 048462          102 ESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPLDLRMDHLETLEIDRCSLESKNDYFGDQGRTRTY  181 (325)
Q Consensus       102 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~  181 (325)
                      ..+++|+.|++++|....++.+..    ..+|+.|+++++....++.+..+++|+.|++++|...         +..+..
T Consensus       106 ~~l~~L~~L~Ls~N~l~~l~~l~~----l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~---------~~~~l~  172 (605)
T 1m9s_A          106 KDLKKLKSLSLEHNGISDINGLVH----LPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQIS---------DIVPLA  172 (605)
T ss_dssp             TTCTTCCEEECTTSCCCCCGGGGG----CTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCC---------CCGGGT
T ss_pred             ccCCCCCEEEecCCCCCCCccccC----CCccCEEECCCCccCCchhhcccCCCCEEECcCCcCC---------Cchhhc
Confidence            555666666666655544332221    2235666666554444555667788888888877653         222235


Q ss_pred             ccccccEEEecCCCCCCccccccCCCCccEEEEeccCC
Q 048462          182 CFRNLRHLSVKTCPCMTDLKWIRYAPNLQFLYVSYCPR  219 (325)
Q Consensus       182 ~~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~  219 (325)
                      .+++|+.|+|++| .+.+++.+..+++|+.|++++|+.
T Consensus       173 ~l~~L~~L~Ls~N-~i~~l~~l~~l~~L~~L~L~~N~l  209 (605)
T 1m9s_A          173 GLTKLQNLYLSKN-HISDLRALAGLKNLDVLELFSQEC  209 (605)
T ss_dssp             TCTTCCEEECCSS-CCCBCGGGTTCTTCSEEECCSEEE
T ss_pred             cCCCCCEEECcCC-CCCCChHHccCCCCCEEEccCCcC
Confidence            6778888888887 777777777788888888887764

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.66  E-value=1.5e-16  Score=138.26  Aligned_cols=217  Identities=12%  Similarity=0.118  Sum_probs=154.8

Q ss_pred             ccCceecCCCCccc--ccCh--hhhccccCceeeccCCCCCeeechhhh--hCCCcccEEEecccceeeeeeccCccc--
Q 048462           26 INLCYLNLSNTRIG--QLPT--GITYLKNLKILRLDGMRYLAFVPCQVI--SSLSSLQVFSWFSTELVELHYVDSTSV--   97 (325)
Q Consensus        26 ~~L~~L~l~~~~l~--~lp~--~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~~~~~~~--   97 (325)
                      ..++.+.+.++.+.  .+..  ....+++|++|++++|.+.+..|.. +  ..+++|++|++++|.+       ....  
T Consensus        64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~~~~~~L~~L~Ls~n~i-------~~~~~~  135 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPL-PLEATGLALSSLRLRNVSW-------ATGRSW  135 (310)
T ss_dssp             CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCC-SSSCCCBCCSSCEEESCCC-------SSTTSS
T ss_pred             cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhh-hhhccCCCCCEEEeecccc-------cchhhh
Confidence            35777888877663  2221  1334678999999999888777776 6  8899999999999987       3221  


Q ss_pred             --hhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeec---cc--c-cccCCCCCeEEEcCCCCceec
Q 048462           98 --LAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFL---LP--L-DLRMDHLETLEIDRCSLESKN  169 (325)
Q Consensus        98 --~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~---l~--~-l~~l~~L~~L~l~~~~~~~~~  169 (325)
                        ...+..+++|+.|++++|........  ......+|+.|+++++....   ++  . +..+++|++|++++|......
T Consensus       136 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~  213 (310)
T 4glp_A          136 LAELQQWLKPGLKVLSIAQAHSPAFSCE--QVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPT  213 (310)
T ss_dssp             HHHHHTTBCSCCCEEEEECCSSCCCCTT--SCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHH
T ss_pred             hHHHHhhhccCCCEEEeeCCCcchhhHH--HhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchH
Confidence              13456789999999999988654321  11223469999999765432   22  2 468899999999999863211


Q ss_pred             cccCCCCCcc---ccccccccEEEecCCCCCCcc--ccccCC---CCccEEEEeccCCchhhcccCCCCCCCcccccccc
Q 048462          170 DYFGDQGRTR---TYCFRNLRHLSVKTCPCMTDL--KWIRYA---PNLQFLYVSYCPRLSEIIGTYESPGTSEIEESQDF  241 (325)
Q Consensus       170 ~~~~~~~~~~---~~~~~~L~~L~l~~~~~l~~l--~~~~~~---~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~  241 (325)
                             ..+   ...+++|++|+++++ .++..  +.+..+   ++|++|++++|.. +.+.            ..+  
T Consensus       214 -------~~~~~l~~~l~~L~~L~Ls~N-~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l-~~lp------------~~~--  270 (310)
T 4glp_A          214 -------GVCAALAAAGVQPHSLDLSHN-SLRATVNPSAPRCMWSSALNSLNLSFAGL-EQVP------------KGL--  270 (310)
T ss_dssp             -------HHHHHHHHHTCCCSSEECTTS-CCCCCCCSCCSSCCCCTTCCCEECCSSCC-CSCC------------SCC--
T ss_pred             -------HHHHHHHhcCCCCCEEECCCC-CCCccchhhHHhccCcCcCCEEECCCCCC-Cchh------------hhh--
Confidence                   110   135689999999999 67775  234444   7999999999864 3332            233  


Q ss_pred             CCcccEEeccCCCCcceeccCcccCCCccEEeeeCC
Q 048462          242 FSNLMVIDLRHLPSLTSICCGVVPFPSLQTISVNGC  277 (325)
Q Consensus       242 ~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c  277 (325)
                      +++|+.|++++| .++.++. ...+++|+.|+++++
T Consensus       271 ~~~L~~L~Ls~N-~l~~~~~-~~~l~~L~~L~L~~N  304 (310)
T 4glp_A          271 PAKLRVLDLSSN-RLNRAPQ-PDELPEVDNLTLDGN  304 (310)
T ss_dssp             CSCCSCEECCSC-CCCSCCC-TTSCCCCSCEECSST
T ss_pred             cCCCCEEECCCC-cCCCCch-hhhCCCccEEECcCC
Confidence            389999999997 6777655 467899999999987

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.65  E-value=3.5e-17  Score=154.66  Aligned_cols=33  Identities=15%  Similarity=0.157  Sum_probs=18.3

Q ss_pred             CceEEEEceeeeecccc-cccCCCCCeEEEcCCC
Q 048462          132 CIKRLAVVLMASFLLPL-DLRMDHLETLEIDRCS  164 (325)
Q Consensus       132 ~L~~L~l~~~~~~~l~~-l~~l~~L~~L~l~~~~  164 (325)
                      +|+.+.+++.....+|. +..+++|++|++++|.
T Consensus       271 ~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~  304 (592)
T 3ogk_B          271 KLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL  304 (592)
T ss_dssp             TCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC
T ss_pred             cccccCccccchhHHHHHHhhcCCCcEEecCCCc
Confidence            45555555444444444 4456666666666665

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.65  E-value=2.2e-15  Score=126.85  Aligned_cols=173  Identities=18%  Similarity=0.187  Sum_probs=110.4

Q ss_pred             CCcEEecCCCCCCCcCchhhhCcccCceecCCCCcccccCh-hhhccccCceeeccCCCCCeeechhhhhCCCcccEEEe
Q 048462            3 ALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPT-GITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSW   81 (325)
Q Consensus         3 ~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l   81 (325)
                      ..+.++++++ .++.+|..+.  .++++|++++|.++.++. .+.++++|++|++++|.+....+.. +..+++|++|++
T Consensus        15 ~~~~l~~~~~-~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L   90 (251)
T 3m19_A           15 GKKEVDCQGK-SLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGV-FDDLTELGTLGL   90 (251)
T ss_dssp             GGTEEECTTC-CCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTT-TTTCTTCCEEEC
T ss_pred             CCeEEecCCC-CccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhH-hccCCcCCEEEC
Confidence            3567788877 7777776555  578888888887765544 4677888888888886655544444 677888888888


Q ss_pred             cccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccccccCCCCCeEEEc
Q 048462           82 FSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPLDLRMDHLETLEID  161 (325)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~l~~L~~L~l~  161 (325)
                      ++|.+       ....+..+..+++|+.|++++|....++.                        ..+..+++|+.|+++
T Consensus        91 ~~n~l-------~~~~~~~~~~l~~L~~L~L~~N~l~~~~~------------------------~~~~~l~~L~~L~Ls  139 (251)
T 3m19_A           91 ANNQL-------ASLPLGVFDHLTQLDKLYLGGNQLKSLPS------------------------GVFDRLTKLKELRLN  139 (251)
T ss_dssp             TTSCC-------CCCCTTTTTTCTTCCEEECCSSCCCCCCT------------------------TTTTTCTTCCEEECC
T ss_pred             CCCcc-------cccChhHhcccCCCCEEEcCCCcCCCcCh------------------------hHhccCCcccEEECc
Confidence            88776       33344456667777777777765443211                        013456677777777


Q ss_pred             CCCCceeccccCCCCCccccccccccEEEecCCCCCCccc--cccCCCCccEEEEeccC
Q 048462          162 RCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDLK--WIRYAPNLQFLYVSYCP  218 (325)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~--~~~~~~~L~~L~l~~~~  218 (325)
                      +|......     .+.+  ..+++|++|+++++ .++.++  .+..+++|++|++.+|+
T Consensus       140 ~N~l~~~~-----~~~~--~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~  190 (251)
T 3m19_A          140 TNQLQSIP-----AGAF--DKLTNLQTLSLSTN-QLQSVPHGAFDRLGKLQTITLFGNQ  190 (251)
T ss_dssp             SSCCCCCC-----TTTT--TTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred             CCcCCccC-----HHHc--CcCcCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCc
Confidence            77643111     0011  34567777777777 566554  35566777777777765

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.65  E-value=1.6e-15  Score=134.04  Aligned_cols=218  Identities=13%  Similarity=0.048  Sum_probs=150.7

Q ss_pred             CCCcEEecCCCCCCCcCch-hhhCcccCceecCCCCcc-cccChh-hhccccCceeeccCCCCCeeechhhhhCCCcccE
Q 048462            2 HALAVLDLSYNLDLVKLPE-AIGKLINLCYLNLSNTRI-GQLPTG-ITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQV   78 (325)
Q Consensus         2 ~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~l-~~lp~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~   78 (325)
                      +++++|+|++| .++.+|. .|.++++|++|++++|.+ +.+|.. +.++++++++...+++....++..++..+++|++
T Consensus        30 ~~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~  108 (350)
T 4ay9_X           30 RNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY  108 (350)
T ss_dssp             TTCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCE
T ss_pred             CCCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccc
Confidence            57999999999 8999975 589999999999999987 556654 6789998876655545566665444899999999


Q ss_pred             EEecccceeeeeeccCccchhhhccCCCcceEEEEecC-cccccccccCccccCCceEEEEceeeeecccc-cccCCCCC
Q 048462           79 FSWFSTELVELHYVDSTSVLAELESLENIHDISVTLCN-VDAVNRVKSSPKLQSCIKRLAVVLMASFLLPL-DLRMDHLE  156 (325)
Q Consensus        79 L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~-l~~l~~L~  156 (325)
                      |++++|.+       .......+....++..+++.++. ...++.. ........++.|++++.....++. .....+|+
T Consensus       109 L~l~~n~l-------~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~-~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~  180 (350)
T 4ay9_X          109 LLISNTGI-------KHLPDVHKIHSLQKVLLDIQDNINIHTIERN-SFVGLSFESVILWLNKNGIQEIHNSAFNGTQLD  180 (350)
T ss_dssp             EEEEEECC-------SSCCCCTTCCBSSCEEEEEESCTTCCEECTT-SSTTSBSSCEEEECCSSCCCEECTTSSTTEEEE
T ss_pred             cccccccc-------ccCCchhhcccchhhhhhhcccccccccccc-chhhcchhhhhhccccccccCCChhhccccchh
Confidence            99999987       33333334455667777776543 3333221 112233347788888666555655 44556788


Q ss_pred             eEEEcCCCCceeccccCCCCCccc---cccccccEEEecCCCCCCccccccCCCCccEEEEeccCCchhhcccCCCCCCC
Q 048462          157 TLEIDRCSLESKNDYFGDQGRTRT---YCFRNLRHLSVKTCPCMTDLKWIRYAPNLQFLYVSYCPRLSEIIGTYESPGTS  233 (325)
Q Consensus       157 ~L~l~~~~~~~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~  233 (325)
                      .+.+.++..+         +.++.   ..+++|+.|+++++ +++.++. ..+.+|+.|.+.++..++.+.         
T Consensus       181 ~l~l~~~n~l---------~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~-~~~~~L~~L~~l~~~~l~~lP---------  240 (350)
T 4ay9_X          181 ELNLSDNNNL---------EELPNDVFHGASGPVILDISRT-RIHSLPS-YGLENLKKLRARSTYNLKKLP---------  240 (350)
T ss_dssp             EEECTTCTTC---------CCCCTTTTTTEECCSEEECTTS-CCCCCCS-SSCTTCCEEECTTCTTCCCCC---------
T ss_pred             HHhhccCCcc---------cCCCHHHhccCcccchhhcCCC-CcCccCh-hhhccchHhhhccCCCcCcCC---------
Confidence            8888765543         12222   45778888888888 7887765 337788888877776655443         


Q ss_pred             ccccccccCCcccEEeccC
Q 048462          234 EIEESQDFFSNLMVIDLRH  252 (325)
Q Consensus       234 ~~~~~~~~~~~L~~L~l~~  252 (325)
                          .+..+++|+.+++.+
T Consensus       241 ----~l~~l~~L~~l~l~~  255 (350)
T 4ay9_X          241 ----TLEKLVALMEASLTY  255 (350)
T ss_dssp             ----CTTTCCSCCEEECSC
T ss_pred             ----CchhCcChhhCcCCC
Confidence                456788888888764

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.63  E-value=1.1e-15  Score=123.78  Aligned_cols=152  Identities=11%  Similarity=0.140  Sum_probs=95.5

Q ss_pred             hhccccCceeeccCCCCCeeechhhhhCCCcccEEEecccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccc
Q 048462           45 ITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVK  124 (325)
Q Consensus        45 l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~  124 (325)
                      ...+++|++|++++|.+. .+| . +..+++|++|++++|.+         ..+..+..+++|+.|++++|.....    
T Consensus        40 ~~~l~~L~~L~l~~n~i~-~l~-~-l~~l~~L~~L~l~~n~~---------~~~~~l~~l~~L~~L~l~~n~l~~~----  103 (197)
T 4ezg_A           40 EAQMNSLTYITLANINVT-DLT-G-IEYAHNIKDLTINNIHA---------TNYNPISGLSNLERLRIMGKDVTSD----  103 (197)
T ss_dssp             HHHHHTCCEEEEESSCCS-CCT-T-GGGCTTCSEEEEESCCC---------SCCGGGTTCTTCCEEEEECTTCBGG----
T ss_pred             hhhcCCccEEeccCCCcc-ChH-H-HhcCCCCCEEEccCCCC---------CcchhhhcCCCCCEEEeECCccCcc----
Confidence            478999999999996654 667 4 89999999999999976         2335788899999999999876541    


Q ss_pred             cCccccCCceEEEEceeeeecccccccCCCCCeEEEcCCCCceeccccCCCCCccccccccccEEEecCCCCCCcccccc
Q 048462          125 SSPKLQSCIKRLAVVLMASFLLPLDLRMDHLETLEIDRCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDLKWIR  204 (325)
Q Consensus       125 ~~~~~~~~L~~L~l~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~  204 (325)
                                          ..+.+..+++|++|++++|...+...     ..  ...+++|++|++++|..+++++.+.
T Consensus       104 --------------------~~~~l~~l~~L~~L~Ls~n~i~~~~~-----~~--l~~l~~L~~L~L~~n~~i~~~~~l~  156 (197)
T 4ezg_A          104 --------------------KIPNLSGLTSLTLLDISHSAHDDSIL-----TK--INTLPKVNSIDLSYNGAITDIMPLK  156 (197)
T ss_dssp             --------------------GSCCCTTCTTCCEEECCSSBCBGGGH-----HH--HTTCSSCCEEECCSCTBCCCCGGGG
T ss_pred             --------------------cChhhcCCCCCCEEEecCCccCcHhH-----HH--HhhCCCCCEEEccCCCCccccHhhc
Confidence                                11113345556666666655431000     00  0345566666666663355555555


Q ss_pred             CCCCccEEEEeccCCchhhcccCCCCCCCccccccccCCcccEEeccCC
Q 048462          205 YAPNLQFLYVSYCPRLSEIIGTYESPGTSEIEESQDFFSNLMVIDLRHL  253 (325)
Q Consensus       205 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  253 (325)
                      .+++|++|++++|.. +++             ..+..+++|+.|++.++
T Consensus       157 ~l~~L~~L~l~~n~i-~~~-------------~~l~~l~~L~~L~l~~N  191 (197)
T 4ezg_A          157 TLPELKSLNIQFDGV-HDY-------------RGIEDFPKLNQLYAFSQ  191 (197)
T ss_dssp             GCSSCCEEECTTBCC-CCC-------------TTGGGCSSCCEEEECBC
T ss_pred             CCCCCCEEECCCCCC-cCh-------------HHhccCCCCCEEEeeCc
Confidence            566666666666542 111             13445566666666654

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.63  E-value=2.1e-16  Score=140.40  Aligned_cols=234  Identities=14%  Similarity=0.157  Sum_probs=157.2

Q ss_pred             CCCcEEecCCCCCCCcCc-----hhhhCcc-cCceecCCCCccccc-Chhhhcc-----ccCceeeccCCCCCeeechh-
Q 048462            2 HALAVLDLSYNLDLVKLP-----EAIGKLI-NLCYLNLSNTRIGQL-PTGITYL-----KNLKILRLDGMRYLAFVPCQ-   68 (325)
Q Consensus         2 ~~L~~L~l~~~~~~~~lp-----~~~~~l~-~L~~L~l~~~~l~~l-p~~l~~l-----~~L~~L~l~~~~~~~~~~~~-   68 (325)
                      ++|++|++++| .++..+     ..+..++ +|++|++++|.++.. +..+..+     ++|++|++++|.+....+.. 
T Consensus        22 ~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l  100 (362)
T 3goz_A           22 HGVTSLDLSLN-NLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL  100 (362)
T ss_dssp             TTCCEEECTTS-CGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred             CCceEEEccCC-CCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence            45999999999 788765     5677888 999999999998644 4455554     99999999998766544432 


Q ss_pred             --hhhCC-CcccEEEecccceeeeeeccCccchhh----hcc-CCCcceEEEEecCccccc--ccccC-ccccCCceEEE
Q 048462           69 --VISSL-SSLQVFSWFSTELVELHYVDSTSVLAE----LES-LENIHDISVTLCNVDAVN--RVKSS-PKLQSCIKRLA  137 (325)
Q Consensus        69 --~~~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~----l~~-l~~L~~L~l~~~~~~~~~--~~~~~-~~~~~~L~~L~  137 (325)
                        .+..+ ++|++|++++|.+       .......    +.. .++|++|++++|......  .+... ......|++|+
T Consensus       101 ~~~l~~~~~~L~~L~Ls~N~l-------~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~  173 (362)
T 3goz_A          101 VKTLAAIPFTITVLDLGWNDF-------SSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLN  173 (362)
T ss_dssp             HHHHHTSCTTCCEEECCSSCG-------GGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEE
T ss_pred             HHHHHhCCCCccEEECcCCcC-------CcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEee
Confidence              14445 8999999999988       3333333    444 369999999999876321  11111 12223699999


Q ss_pred             Eceeeeecccc------cccC-CCCCeEEEcCCCCceeccccCCCCCccc--cc-cccccEEEecCCCCCCccc------
Q 048462          138 VVLMASFLLPL------DLRM-DHLETLEIDRCSLESKNDYFGDQGRTRT--YC-FRNLRHLSVKTCPCMTDLK------  201 (325)
Q Consensus       138 l~~~~~~~l~~------l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~--~~-~~~L~~L~l~~~~~l~~l~------  201 (325)
                      ++++.......      +..+ ++|++|++++|...+...     ..++.  .. .++|++|+++++ .+++..      
T Consensus       174 Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~-----~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~  247 (362)
T 3goz_A          174 LRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSY-----AELAYIFSSIPNHVVSLNLCLN-CLHGPSLENLKL  247 (362)
T ss_dssp             CTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCH-----HHHHHHHHHSCTTCCEEECCSS-CCCCCCHHHHHH
T ss_pred             ecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHH-----HHHHHHHhcCCCCceEEECcCC-CCCcHHHHHHHH
Confidence            99765543332      4445 599999999998642111     11221  22 358999999999 777643      


Q ss_pred             cccCCCCccEEEEeccCCchhhcccCCCCCCCccccccccCCcccEEeccCCC
Q 048462          202 WIRYAPNLQFLYVSYCPRLSEIIGTYESPGTSEIEESQDFFSNLMVIDLRHLP  254 (325)
Q Consensus       202 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  254 (325)
                      .+..+++|++|++++|.. ..+...    +...+...+..+++|+.|+++++.
T Consensus       248 ~~~~l~~L~~L~L~~n~l-~~i~~~----~~~~l~~~~~~l~~L~~LdL~~N~  295 (362)
T 3goz_A          248 LKDSLKHLQTVYLDYDIV-KNMSKE----QCKALGAAFPNIQKIILVDKNGKE  295 (362)
T ss_dssp             TTTTTTTCSEEEEEHHHH-TTCCHH----HHHHHHTTSTTCCEEEEECTTSCB
T ss_pred             HHhcCCCccEEEeccCCc-cccCHH----HHHHHHHHhccCCceEEEecCCCc
Confidence            245678999999999861 111100    001122356678889999999874

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.59  E-value=6.9e-16  Score=145.77  Aligned_cols=84  Identities=17%  Similarity=0.301  Sum_probs=50.4

Q ss_pred             ccccccEEEecCCCCCCc--cccccC-CCCccEEEEeccCCchhhcccCCCCCCCccccccccCCcccEEeccCCCCcce
Q 048462          182 CFRNLRHLSVKTCPCMTD--LKWIRY-APNLQFLYVSYCPRLSEIIGTYESPGTSEIEESQDFFSNLMVIDLRHLPSLTS  258 (325)
Q Consensus       182 ~~~~L~~L~l~~~~~l~~--l~~~~~-~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~  258 (325)
                      .+++|++|++++  .+++  +..+.. +++|++|++++|........           .....+++|+.|++++|+. ++
T Consensus       430 ~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~-----------~l~~~~~~L~~L~L~~n~~-~~  495 (594)
T 2p1m_B          430 HCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMH-----------HVLSGCDSLRKLEIRDCPF-GD  495 (594)
T ss_dssp             HCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHH-----------HHHHHCTTCCEEEEESCSC-CH
T ss_pred             hCCCccEEeecC--cccHHHHHHHHHhchhccEeeccCCCCcHHHHH-----------HHHhcCCCcCEEECcCCCC-cH
Confidence            455666666644  3333  222222 67788888887763222111           1225688999999999864 32


Q ss_pred             e--ccCcccCCCccEEeeeCCCC
Q 048462          259 I--CCGVVPFPSLQTISVNGCPS  279 (325)
Q Consensus       259 ~--~~~~~~~~~L~~L~l~~c~~  279 (325)
                      .  ......+++|+.|++++|+.
T Consensus       496 ~~~~~~~~~l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          496 KALLANASKLETMRSLWMSSCSV  518 (594)
T ss_dssp             HHHHHTGGGGGGSSEEEEESSCC
T ss_pred             HHHHHHHHhCCCCCEEeeeCCCC
Confidence            2  22233478999999999954

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.59  E-value=4.8e-15  Score=125.61  Aligned_cols=168  Identities=16%  Similarity=0.172  Sum_probs=115.9

Q ss_pred             CcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEecccceeeeeeccCccchhhhcc
Q 048462           24 KLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLAELES  103 (325)
Q Consensus        24 ~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~  103 (325)
                      .+.++..++++.+.++.++ .+..+++|++|++++|.+ ..++ . +..+++|+.|++++|.+       . ..+. +..
T Consensus        17 ~l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i-~~l~-~-l~~l~~L~~L~L~~N~i-------~-~~~~-l~~   83 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNI-QSLA-G-MQFFTNLKELHLSHNQI-------S-DLSP-LKD   83 (263)
T ss_dssp             HHHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCC-CCCT-T-GGGCTTCCEEECCSSCC-------C-CCGG-GTT
T ss_pred             HHHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCc-ccch-H-HhhCCCCCEEECCCCcc-------C-CChh-hcc
Confidence            3556666777777776665 466777777777777543 3455 3 67777777777777766       2 2222 667


Q ss_pred             CCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccccccCCCCCeEEEcCCCCceeccccCCCCCcccccc
Q 048462          104 LENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPLDLRMDHLETLEIDRCSLESKNDYFGDQGRTRTYCF  183 (325)
Q Consensus       104 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~  183 (325)
                      +++|+.|++++|....++....     ..|+.|+++++....++.+..+++|+.|++++|...+.         .....+
T Consensus        84 l~~L~~L~L~~N~l~~l~~~~~-----~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~---------~~l~~l  149 (263)
T 1xeu_A           84 LTKLEELSVNRNRLKNLNGIPS-----ACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSI---------VMLGFL  149 (263)
T ss_dssp             CSSCCEEECCSSCCSCCTTCCC-----SSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCCBC---------GGGGGC
T ss_pred             CCCCCEEECCCCccCCcCcccc-----CcccEEEccCCccCCChhhcCcccccEEECCCCcCCCC---------hHHccC
Confidence            7777777777776665544332     45777777766665666677888889999888876421         112567


Q ss_pred             ccccEEEecCCCCCCccccccCCCCccEEEEeccCC
Q 048462          184 RNLRHLSVKTCPCMTDLKWIRYAPNLQFLYVSYCPR  219 (325)
Q Consensus       184 ~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~  219 (325)
                      ++|++|+++++ .++++..+..+++|+.|++++|+.
T Consensus       150 ~~L~~L~L~~N-~i~~~~~l~~l~~L~~L~l~~N~~  184 (263)
T 1xeu_A          150 SKLEVLDLHGN-EITNTGGLTRLKKVNWIDLTGQKC  184 (263)
T ss_dssp             TTCCEEECTTS-CCCBCTTSTTCCCCCEEEEEEEEE
T ss_pred             CCCCEEECCCC-cCcchHHhccCCCCCEEeCCCCcc
Confidence            88889999888 788777777888888988888863

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.57  E-value=2e-14  Score=120.87  Aligned_cols=153  Identities=17%  Similarity=0.219  Sum_probs=112.7

Q ss_pred             CCCcEEecCCCCCCCcCc-hhhhCcccCceecCCCCcccccCh-hhhccccCceeeccCCCCCeeechhhhhCCCcccEE
Q 048462            2 HALAVLDLSYNLDLVKLP-EAIGKLINLCYLNLSNTRIGQLPT-GITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVF   79 (325)
Q Consensus         2 ~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L   79 (325)
                      ++++.|++++| .++.++ ..+.++++|++|++++|.++.++. .+.++++|++|++++|.+....+.. +..+++|++|
T Consensus        35 ~~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L  112 (251)
T 3m19_A           35 ADTEKLDLQST-GLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGV-FDHLTQLDKL  112 (251)
T ss_dssp             TTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTT-TTTCTTCCEE
T ss_pred             CCCCEEEccCC-CcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhH-hcccCCCCEE
Confidence            46899999999 788774 579999999999999999976655 4789999999999997766444444 8899999999


Q ss_pred             EecccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccccccCCCCCeEE
Q 048462           80 SWFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPLDLRMDHLETLE  159 (325)
Q Consensus        80 ~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~l~~L~~L~  159 (325)
                      ++++|.+       .......+..+++|+.|++++|....++.                        ..+..+++|+.|+
T Consensus       113 ~L~~N~l-------~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~------------------------~~~~~l~~L~~L~  161 (251)
T 3m19_A          113 YLGGNQL-------KSLPSGVFDRLTKLKELRLNTNQLQSIPA------------------------GAFDKLTNLQTLS  161 (251)
T ss_dssp             ECCSSCC-------CCCCTTTTTTCTTCCEEECCSSCCCCCCT------------------------TTTTTCTTCCEEE
T ss_pred             EcCCCcC-------CCcChhHhccCCcccEEECcCCcCCccCH------------------------HHcCcCcCCCEEE
Confidence            9999988       44444457889999999999887654322                        1134566777777


Q ss_pred             EcCCCCceeccccCCCCCccccccccccEEEecCC
Q 048462          160 IDRCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTC  194 (325)
Q Consensus       160 l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  194 (325)
                      +++|......     ...+  ..+++|++|+++++
T Consensus       162 L~~N~l~~~~-----~~~~--~~l~~L~~L~l~~N  189 (251)
T 3m19_A          162 LSTNQLQSVP-----HGAF--DRLGKLQTITLFGN  189 (251)
T ss_dssp             CCSSCCSCCC-----TTTT--TTCTTCCEEECCSC
T ss_pred             CCCCcCCccC-----HHHH--hCCCCCCEEEeeCC
Confidence            7777653111     0011  34567777777776

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.57  E-value=1.7e-14  Score=134.57  Aligned_cols=95  Identities=17%  Similarity=0.223  Sum_probs=51.7

Q ss_pred             CCcEEecCCCCCCCcCchhhhCcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEec
Q 048462            3 ALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWF   82 (325)
Q Consensus         3 ~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~   82 (325)
                      +|++|++++| .++.+|..+.  ++|++|++++|.++.+|   ..+++|++|++++|.+.. +|.  +..  +|++|+++
T Consensus        60 ~L~~L~Ls~n-~L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~-ip~--l~~--~L~~L~Ls  128 (571)
T 3cvr_A           60 QFSELQLNRL-NLSSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDNRLST-LPE--LPA--SLKHLDVD  128 (571)
T ss_dssp             TCSEEECCSS-CCSCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSC-CCC--CCT--TCCEEECC
T ss_pred             CccEEEeCCC-CCCccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCC-cch--hhc--CCCEEECC
Confidence            4566666666 5555655442  55666666666666555   345666666666654433 443  222  56666666


Q ss_pred             ccceeeeeeccCccchhhhccCCCcceEEEEecCccc
Q 048462           83 STELVELHYVDSTSVLAELESLENIHDISVTLCNVDA  119 (325)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  119 (325)
                      +|.+       .. ++.   .+++|+.|++++|.+..
T Consensus       129 ~N~l-------~~-lp~---~l~~L~~L~Ls~N~l~~  154 (571)
T 3cvr_A          129 NNQL-------TM-LPE---LPALLEYINADNNQLTM  154 (571)
T ss_dssp             SSCC-------SC-CCC---CCTTCCEEECCSSCCSC
T ss_pred             CCcC-------CC-CCC---cCccccEEeCCCCccCc
Confidence            6655       11 222   35556666665555443

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.56  E-value=6.2e-16  Score=146.05  Aligned_cols=81  Identities=23%  Similarity=0.197  Sum_probs=52.4

Q ss_pred             CCCCcEEecCCCCCCCc-----CchhhhCcccCceecCCCCc--c--cccChhhhccccCceeeccCCCCCeeechhhhh
Q 048462            1 MHALAVLDLSYNLDLVK-----LPEAIGKLINLCYLNLSNTR--I--GQLPTGITYLKNLKILRLDGMRYLAFVPCQVIS   71 (325)
Q Consensus         1 ~~~L~~L~l~~~~~~~~-----lp~~~~~l~~L~~L~l~~~~--l--~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~   71 (325)
                      |++|++|++++| .++.     ++.....+++|++|++++|.  +  ..++..+.++++|++|++++|.....++.. +.
T Consensus       155 ~~~L~~L~L~~~-~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~-~~  232 (594)
T 2p1m_B          155 CRNLKELDLRES-DVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATL-LQ  232 (594)
T ss_dssp             CTTCCEEECTTC-EEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHH-HH
T ss_pred             CCCCCEEeCcCC-ccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHH-Hh
Confidence            578999999988 4443     33333467788888888875  3  233333456788888888887544445544 56


Q ss_pred             CCCcccEEEecc
Q 048462           72 SLSSLQVFSWFS   83 (325)
Q Consensus        72 ~l~~L~~L~l~~   83 (325)
                      .+++|++|++..
T Consensus       233 ~~~~L~~L~l~~  244 (594)
T 2p1m_B          233 RAPQLEELGTGG  244 (594)
T ss_dssp             HCTTCSEEECSB
T ss_pred             cCCcceEccccc
Confidence            666666666443

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.56  E-value=2.5e-14  Score=123.05  Aligned_cols=170  Identities=15%  Similarity=0.151  Sum_probs=139.5

Q ss_pred             CCCcEEecCCCCCCCcCchhhhCcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEe
Q 048462            2 HALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSW   81 (325)
Q Consensus         2 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l   81 (325)
                      ++|++|++++| .++.++ .+..+++|++|++++|.++.++. +.++++|++|++++|.+. .++.  +..+++|++|++
T Consensus        46 ~~L~~L~l~~~-~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~-~~~~--l~~l~~L~~L~L  119 (291)
T 1h6t_A           46 NSIDQIIANNS-DIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVK-DLSS--LKDLKKLKSLSL  119 (291)
T ss_dssp             HTCCEEECTTS-CCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC-CGGG--GTTCTTCCEEEC
T ss_pred             CcccEEEccCC-CcccCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCC-CChh--hccCCCCCEEEC
Confidence            57999999999 888886 48899999999999999988877 899999999999997654 4554  899999999999


Q ss_pred             cccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccccccCCCCCeEEEc
Q 048462           82 FSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPLDLRMDHLETLEID  161 (325)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~l~~L~~L~l~  161 (325)
                      ++|.+       ..  ...+..+++|+.|++++|....+..+.    ...+|+.|+++++....++.+..+++|+.|+++
T Consensus       120 ~~n~i-------~~--~~~l~~l~~L~~L~l~~n~l~~~~~l~----~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~L~  186 (291)
T 1h6t_A          120 EHNGI-------SD--INGLVHLPQLESLYLGNNKITDITVLS----RLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLS  186 (291)
T ss_dssp             TTSCC-------CC--CGGGGGCTTCCEEECCSSCCCCCGGGG----GCTTCSEEECCSSCCCCCGGGTTCTTCCEEECC
T ss_pred             CCCcC-------CC--ChhhcCCCCCCEEEccCCcCCcchhhc----cCCCCCEEEccCCccccchhhcCCCccCEEECC
Confidence            99988       22  356888999999999999887764333    234589999998877777778899999999999


Q ss_pred             CCCCceeccccCCCCCccccccccccEEEecCCCCCCcc
Q 048462          162 RCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDL  200 (325)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l  200 (325)
                      +|...+.         -....+++|+.|+++++ .+...
T Consensus       187 ~N~i~~l---------~~l~~l~~L~~L~l~~n-~i~~~  215 (291)
T 1h6t_A          187 KNHISDL---------RALAGLKNLDVLELFSQ-ECLNK  215 (291)
T ss_dssp             SSCCCBC---------GGGTTCTTCSEEEEEEE-EEECC
T ss_pred             CCcCCCC---------hhhccCCCCCEEECcCC-cccCC
Confidence            9986421         11256899999999998 55543

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.55  E-value=1.8e-14  Score=135.79  Aligned_cols=189  Identities=17%  Similarity=0.143  Sum_probs=144.5

Q ss_pred             cccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEecccceeeeeeccCccchhhhccC
Q 048462           25 LINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLAELESL  104 (325)
Q Consensus        25 l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l  104 (325)
                      +..+..+.+..+.+..+.. +..+++|+.|++++|.+ ..++.  +..+++|+.|++++|.+       .. .+. +..+
T Consensus        20 l~~l~~l~l~~~~i~~~~~-~~~L~~L~~L~l~~n~i-~~l~~--l~~l~~L~~L~Ls~N~l-------~~-~~~-l~~l   86 (605)
T 1m9s_A           20 FAETIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDI-KSVQG--IQYLPNVTKLFLNGNKL-------TD-IKP-LTNL   86 (605)
T ss_dssp             HHHHHHHHTTCSCTTSEEC-HHHHTTCCCCBCTTCCC-CCCTT--GGGCTTCCEEECTTSCC-------CC-CGG-GGGC
T ss_pred             HHHHHHHhccCCCcccccc-hhcCCCCCEEECcCCCC-CCChH--HccCCCCCEEEeeCCCC-------CC-Chh-hccC
Confidence            4456667777777765543 57899999999999654 45564  89999999999999987       32 232 8899


Q ss_pred             CCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccccccCCCCCeEEEcCCCCceeccccCCCCCccccccc
Q 048462          105 ENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPLDLRMDHLETLEIDRCSLESKNDYFGDQGRTRTYCFR  184 (325)
Q Consensus       105 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~  184 (325)
                      ++|+.|++++|....++.+..    ..+|+.|+++++....++.+..+++|+.|++++|....         ......++
T Consensus        87 ~~L~~L~Ls~N~l~~l~~l~~----l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~---------l~~l~~l~  153 (605)
T 1m9s_A           87 KNLGWLFLDENKIKDLSSLKD----LKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITD---------ITVLSRLT  153 (605)
T ss_dssp             TTCCEEECCSSCCCCCTTSTT----CTTCCEEECTTSCCCCCGGGGGCTTCSEEECCSSCCCC---------CGGGGSCT
T ss_pred             CCCCEEECcCCCCCCChhhcc----CCCCCEEEecCCCCCCCccccCCCccCEEECCCCccCC---------chhhcccC
Confidence            999999999998877653322    34589999998777777778899999999999987642         11115678


Q ss_pred             cccEEEecCCCCCCccccccCCCCccEEEEeccCCchhhcccCCCCCCCccccccccCCcccEEeccCCC
Q 048462          185 NLRHLSVKTCPCMTDLKWIRYAPNLQFLYVSYCPRLSEIIGTYESPGTSEIEESQDFFSNLMVIDLRHLP  254 (325)
Q Consensus       185 ~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  254 (325)
                      +|+.|+|++| .+..++.+..+++|+.|+|++|.. ..+             ..+..+++|+.|++.+|+
T Consensus       154 ~L~~L~Ls~N-~l~~~~~l~~l~~L~~L~Ls~N~i-~~l-------------~~l~~l~~L~~L~L~~N~  208 (605)
T 1m9s_A          154 KLDTLSLEDN-QISDIVPLAGLTKLQNLYLSKNHI-SDL-------------RALAGLKNLDVLELFSQE  208 (605)
T ss_dssp             TCSEEECCSS-CCCCCGGGTTCTTCCEEECCSSCC-CBC-------------GGGTTCTTCSEEECCSEE
T ss_pred             CCCEEECcCC-cCCCchhhccCCCCCEEECcCCCC-CCC-------------hHHccCCCCCEEEccCCc
Confidence            9999999998 788776688899999999998853 322             256778899999999873

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.51  E-value=5.2e-14  Score=119.20  Aligned_cols=167  Identities=13%  Similarity=0.137  Sum_probs=120.9

Q ss_pred             CcEEecCCCCCCCcCchhhhCcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEecc
Q 048462            4 LAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWFS   83 (325)
Q Consensus         4 L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~   83 (325)
                      +..++++++ .++.++ .+..+++|++|++++|.++.++ .+..+++|++|++++|.+. .++.  +..+++|++|++++
T Consensus        21 l~~l~l~~~-~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~-~~~~--l~~l~~L~~L~L~~   94 (263)
T 1xeu_A           21 AVKQNLGKQ-SVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQIS-DLSP--LKDLTKLEELSVNR   94 (263)
T ss_dssp             HHHHHHTCS-CTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCSSCCEEECCS
T ss_pred             HHHHHhcCC-Cccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccC-CChh--hccCCCCCEEECCC
Confidence            445667777 677776 5778888888888888888777 6788888888888886543 4454  77888888888888


Q ss_pred             cceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccccccCCCCCeEEEcCC
Q 048462           84 TELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPLDLRMDHLETLEIDRC  163 (325)
Q Consensus        84 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~l~~L~~L~l~~~  163 (325)
                      |.+       . ..+ .+.. ++|+.|++++|....++.+..    ..+|+.|+++++....++.+..+++|+.|++++|
T Consensus        95 N~l-------~-~l~-~~~~-~~L~~L~L~~N~l~~~~~l~~----l~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N  160 (263)
T 1xeu_A           95 NRL-------K-NLN-GIPS-ACLSRLFLDNNELRDTDSLIH----LKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGN  160 (263)
T ss_dssp             SCC-------S-CCT-TCCC-SSCCEEECCSSCCSBSGGGTT----CTTCCEEECTTSCCCBCGGGGGCTTCCEEECTTS
T ss_pred             Ccc-------C-CcC-cccc-CcccEEEccCCccCCChhhcC----cccccEEECCCCcCCCChHHccCCCCCEEECCCC
Confidence            877       2 222 2333 788888888887776644332    3457888888777666777888999999999998


Q ss_pred             CCceeccccCCCCCccccccccccEEEecCCCCCCcc
Q 048462          164 SLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDL  200 (325)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l  200 (325)
                      ...+.         -....+++|+.|+++++ .+...
T Consensus       161 ~i~~~---------~~l~~l~~L~~L~l~~N-~~~~~  187 (263)
T 1xeu_A          161 EITNT---------GGLTRLKKVNWIDLTGQ-KCVNE  187 (263)
T ss_dssp             CCCBC---------TTSTTCCCCCEEEEEEE-EEECC
T ss_pred             cCcch---------HHhccCCCCCEEeCCCC-cccCC
Confidence            86422         11156789999999988 45543

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.51  E-value=1.1e-13  Score=112.85  Aligned_cols=103  Identities=19%  Similarity=0.349  Sum_probs=66.7

Q ss_pred             cEEecCCCCCCCcCchhhhCcccCceecCCCCcccccChh-hhccccCceeeccCCCCCeeechhhhhCCCcccEEEecc
Q 048462            5 AVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTG-ITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWFS   83 (325)
Q Consensus         5 ~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~   83 (325)
                      +.++.+++ .++.+|..+  .++|++|+++++.++.++.. +.++++|++|++++|.+. .++...+..+++|++|++++
T Consensus        10 ~~v~c~~~-~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~   85 (208)
T 2o6s_A           10 TTVECYSQ-GRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLST   85 (208)
T ss_dssp             TEEECCSS-CCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEecCC-CccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC-ccChhhcCCCCCcCEEECCC
Confidence            45666666 666776544  35788888888877666554 567788888888876544 34433266777888888877


Q ss_pred             cceeeeeeccCccchhhhccCCCcceEEEEecCcc
Q 048462           84 TELVELHYVDSTSVLAELESLENIHDISVTLCNVD  118 (325)
Q Consensus        84 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  118 (325)
                      |.+       .......+..+++|+.|++++|...
T Consensus        86 n~l-------~~~~~~~~~~l~~L~~L~L~~N~l~  113 (208)
T 2o6s_A           86 NQL-------QSLPNGVFDKLTQLKELALNTNQLQ  113 (208)
T ss_dssp             SCC-------CCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             CcC-------CccCHhHhcCccCCCEEEcCCCcCc
Confidence            776       3333334566667777776666443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.51  E-value=1.8e-16  Score=148.39  Aligned_cols=204  Identities=15%  Similarity=0.091  Sum_probs=130.1

Q ss_pred             hCcccCceecCCCCcccccChhhhccccCceeeccCCC-------------CCeeechhhhhCCCcccEEE-ecccceee
Q 048462           23 GKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMR-------------YLAFVPCQVISSLSSLQVFS-WFSTELVE   88 (325)
Q Consensus        23 ~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~-------------~~~~~~~~~~~~l~~L~~L~-l~~~~~~~   88 (325)
                      ..+++|+.|++++|.++.+|..+++|++|+.|+++++.             ..+..|.. ++.+++|+.|+ +..+..  
T Consensus       346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~-l~~l~~L~~L~~l~~n~~--  422 (567)
T 1dce_A          346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKET-LQYFSTLKAVDPMRAAYL--  422 (567)
T ss_dssp             STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHH-HHHHHHHHHHCGGGHHHH--
T ss_pred             ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHH-HHHHHhcccCcchhhccc--
Confidence            45778889999998888889889999999999886643             22233333 55555555555 333221  


Q ss_pred             eeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccccccCCCCCeEEEcCCCCcee
Q 048462           89 LHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPLDLRMDHLETLEIDRCSLESK  168 (325)
Q Consensus        89 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~  168 (325)
                                      ++|+.+.+.++....++.        ..|+.|+++++....+|.+..+++|+.|++++|....+
T Consensus       423 ----------------~~L~~l~l~~n~i~~l~~--------~~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~l  478 (567)
T 1dce_A          423 ----------------DDLRSKFLLENSVLKMEY--------ADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRAL  478 (567)
T ss_dssp             ----------------HHHHHHHHHHHHHHHHHH--------TTCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCC
T ss_pred             ----------------chhhhhhhhcccccccCc--------cCceEEEecCCCCCCCcCccccccCcEeecCccccccc
Confidence                            011111111111111110        12566777766555667777888899999988876421


Q ss_pred             ccccCCCCCccccccccccEEEecCCCCCCccccccCCCCccEEEEeccCCchhhcccCCCCCCCccccccccCCcccEE
Q 048462          169 NDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDLKWIRYAPNLQFLYVSYCPRLSEIIGTYESPGTSEIEESQDFFSNLMVI  248 (325)
Q Consensus       169 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L  248 (325)
                            +..+  ..+++|+.|+++++ .++.++.+..+++|++|++++|.. +.+.          .|..++.+++|+.|
T Consensus       479 ------p~~~--~~l~~L~~L~Ls~N-~l~~lp~l~~l~~L~~L~Ls~N~l-~~~~----------~p~~l~~l~~L~~L  538 (567)
T 1dce_A          479 ------PPAL--AALRCLEVLQASDN-ALENVDGVANLPRLQELLLCNNRL-QQSA----------AIQPLVSCPRLVLL  538 (567)
T ss_dssp             ------CGGG--GGCTTCCEEECCSS-CCCCCGGGTTCSSCCEEECCSSCC-CSSS----------TTGGGGGCTTCCEE
T ss_pred             ------chhh--hcCCCCCEEECCCC-CCCCCcccCCCCCCcEEECCCCCC-CCCC----------CcHHHhcCCCCCEE
Confidence                  1111  56788999999988 788888888888999999988853 2221          03477888899999


Q ss_pred             eccCCCCcceeccCcc----cCCCccEEee
Q 048462          249 DLRHLPSLTSICCGVV----PFPSLQTISV  274 (325)
Q Consensus       249 ~l~~~~~l~~~~~~~~----~~~~L~~L~l  274 (325)
                      ++++| .+...+....    .+|+|+.|++
T Consensus       539 ~L~~N-~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          539 NLQGN-SLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             ECTTS-GGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             EecCC-cCCCCccHHHHHHHHCcccCccCC
Confidence            99887 4555544322    2788888753

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.49  E-value=8.4e-14  Score=113.63  Aligned_cols=109  Identities=23%  Similarity=0.376  Sum_probs=88.5

Q ss_pred             CCCcEEecCCCCCCCcCch-hhhCcccCceecCCCCcccccChh-hhccccCceeeccCCCCCeeechhhhhCCCcccEE
Q 048462            2 HALAVLDLSYNLDLVKLPE-AIGKLINLCYLNLSNTRIGQLPTG-ITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVF   79 (325)
Q Consensus         2 ~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~l~~lp~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L   79 (325)
                      ++|++|++++| .++.++. .+..+++|++|++++|.++.++.. +.++++|++|++++|.+.. ++...+..+++|++|
T Consensus        28 ~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L  105 (208)
T 2o6s_A           28 AQTTYLDLETN-SLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS-LPNGVFDKLTQLKEL  105 (208)
T ss_dssp             TTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEE
T ss_pred             CCCcEEEcCCC-ccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCc-cCHhHhcCccCCCEE
Confidence            57999999999 7888864 578999999999999999888765 5889999999999976654 444337899999999


Q ss_pred             EecccceeeeeeccCccchhhhccCCCcceEEEEecCccc
Q 048462           80 SWFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDA  119 (325)
Q Consensus        80 ~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  119 (325)
                      ++++|.+       .......+..+++|+.|++++|....
T Consensus       106 ~L~~N~l-------~~~~~~~~~~l~~L~~L~l~~N~l~~  138 (208)
T 2o6s_A          106 ALNTNQL-------QSLPDGVFDKLTQLKDLRLYQNQLKS  138 (208)
T ss_dssp             ECCSSCC-------CCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             EcCCCcC-------cccCHhHhccCCcCCEEECCCCccce
Confidence            9999988       44444456778888888888876543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.47  E-value=4.3e-13  Score=125.16  Aligned_cols=174  Identities=17%  Similarity=0.187  Sum_probs=92.7

Q ss_pred             cCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEecccceeeeeeccCccchhhhccCCC
Q 048462           27 NLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLAELESLEN  106 (325)
Q Consensus        27 ~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~  106 (325)
                      +|++|+++++.++.+|..+  +++|++|++++|.+. .+|    ..+++|++|++++|.+       .. ++. +..  +
T Consensus        60 ~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~-~ip----~~l~~L~~L~Ls~N~l-------~~-ip~-l~~--~  121 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPDNL--PPQITVLEITQNALI-SLP----ELPASLEYLDACDNRL-------ST-LPE-LPA--S  121 (571)
T ss_dssp             TCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCS-CCC----CCCTTCCEEECCSSCC-------SC-CCC-CCT--T
T ss_pred             CccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCc-ccc----cccCCCCEEEccCCCC-------CC-cch-hhc--C
Confidence            6777777777666666654  366777777775443 455    2356677777777665       22 333 332  6


Q ss_pred             cceEEEEecCcccccccccCccccCCceEEEEceeeeecccccccCCCCCeEEEcCCCCceeccccCCCCCccccccccc
Q 048462          107 IHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPLDLRMDHLETLEIDRCSLESKNDYFGDQGRTRTYCFRNL  186 (325)
Q Consensus       107 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L  186 (325)
                      |+.|++++|.+..++.      ...+|+.|+++++....+|.  .+++|+.|++++|....          +|. -.++|
T Consensus       122 L~~L~Ls~N~l~~lp~------~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~L~~----------lp~-l~~~L  182 (571)
T 3cvr_A          122 LKHLDVDNNQLTMLPE------LPALLEYINADNNQLTMLPE--LPTSLEVLSVRNNQLTF----------LPE-LPESL  182 (571)
T ss_dssp             CCEEECCSSCCSCCCC------CCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSC----------CCC-CCTTC
T ss_pred             CCEEECCCCcCCCCCC------cCccccEEeCCCCccCcCCC--cCCCcCEEECCCCCCCC----------cch-hhCCC
Confidence            6677776666555433      22345666666554444444  44566666666665421          111 11556


Q ss_pred             cEEEecCCCCCCccccccCCCCc-------cEEEEeccCCchhhcccCCCCCCCccccccccCCcccEEeccCC
Q 048462          187 RHLSVKTCPCMTDLKWIRYAPNL-------QFLYVSYCPRLSEIIGTYESPGTSEIEESQDFFSNLMVIDLRHL  253 (325)
Q Consensus       187 ~~L~l~~~~~l~~l~~~~~~~~L-------~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  253 (325)
                      ++|+++++ .++.++.+.  .+|       +.|++++|. ++.+            |..+..+++|+.|++.+|
T Consensus       183 ~~L~Ls~N-~L~~lp~~~--~~L~~~~~~L~~L~Ls~N~-l~~l------------p~~l~~l~~L~~L~L~~N  240 (571)
T 3cvr_A          183 EALDVSTN-LLESLPAVP--VRNHHSEETEIFFRCRENR-ITHI------------PENILSLDPTCTIILEDN  240 (571)
T ss_dssp             CEEECCSS-CCSSCCCCC----------CCEEEECCSSC-CCCC------------CGGGGGSCTTEEEECCSS
T ss_pred             CEEECcCC-CCCchhhHH--HhhhcccccceEEecCCCc-ceec------------CHHHhcCCCCCEEEeeCC
Confidence            66666666 555554422  144       666666553 2222            224444666666666665

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.46  E-value=4.1e-13  Score=110.58  Aligned_cols=148  Identities=14%  Similarity=0.240  Sum_probs=104.0

Q ss_pred             cEEecCCCCCCCcCchhhhCcccCceecCCCCcccccCh-hhhccccCceeeccCCCCCeeechhhhhCCCcccEEEecc
Q 048462            5 AVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPT-GITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWFS   83 (325)
Q Consensus         5 ~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~   83 (325)
                      +.++.+++ .++.+|..+.  .+|++|++++|.++.++. .+.++++|++|++++|.+....|.. +..+++|++|++++
T Consensus        14 ~~v~c~~~-~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~-~~~l~~L~~L~Ls~   89 (220)
T 2v9t_B           14 NIVDCRGK-GLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDA-FQGLRSLNSLVLYG   89 (220)
T ss_dssp             TEEECTTS-CCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTT-TTTCSSCCEEECCS
T ss_pred             CEEEcCCC-CcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHH-hhCCcCCCEEECCC
Confidence            56788888 7888887654  688999999998877765 5788889999999987766655666 88899999999999


Q ss_pred             cceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccccccCCCCCeEEEcCC
Q 048462           84 TELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPLDLRMDHLETLEIDRC  163 (325)
Q Consensus        84 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~l~~L~~L~l~~~  163 (325)
                      |.+       .......+..+++|+.|++++|.+..+..                        ..+..+++|+.|++++|
T Consensus        90 N~l-------~~l~~~~f~~l~~L~~L~L~~N~l~~~~~------------------------~~~~~l~~L~~L~L~~N  138 (220)
T 2v9t_B           90 NKI-------TELPKSLFEGLFSLQLLLLNANKINCLRV------------------------DAFQDLHNLNLLSLYDN  138 (220)
T ss_dssp             SCC-------CCCCTTTTTTCTTCCEEECCSSCCCCCCT------------------------TTTTTCTTCCEEECCSS
T ss_pred             CcC-------CccCHhHccCCCCCCEEECCCCCCCEeCH------------------------HHcCCCCCCCEEECCCC
Confidence            887       33333446778888888888886554311                        12446677777777777


Q ss_pred             CCceeccccCCCCCccccccccccEEEecCC
Q 048462          164 SLESKNDYFGDQGRTRTYCFRNLRHLSVKTC  194 (325)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  194 (325)
                      ......     .+.+  ..+++|++|+++++
T Consensus       139 ~l~~~~-----~~~~--~~l~~L~~L~L~~N  162 (220)
T 2v9t_B          139 KLQTIA-----KGTF--SPLRAIQTMHLAQN  162 (220)
T ss_dssp             CCSCCC-----TTTT--TTCTTCCEEECCSS
T ss_pred             cCCEEC-----HHHH--hCCCCCCEEEeCCC
Confidence            653211     1111  34667777777776

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.45  E-value=5.7e-13  Score=110.41  Aligned_cols=147  Identities=24%  Similarity=0.285  Sum_probs=96.6

Q ss_pred             cEEecCCCCCCCcCchhhhCcccCceecCCCCccccc-ChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEecc
Q 048462            5 AVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQL-PTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWFS   83 (325)
Q Consensus         5 ~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~l-p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~   83 (325)
                      +.++.+++ .++.+|..+.  ++|++|++++|.+..+ |..+.++++|++|++++|.+ ..++...+..+++|+.|++++
T Consensus        22 ~~v~c~~~-~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l-~~i~~~~~~~l~~L~~L~Ls~   97 (229)
T 3e6j_A           22 TTVDCRSK-RHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGT   97 (229)
T ss_dssp             TEEECTTS-CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCS
T ss_pred             CEeEccCC-CcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCC-CCcChhhcccCCCcCEEECCC
Confidence            46777777 7777776554  7888888888888655 55577888888888888665 445543367788888888888


Q ss_pred             cceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccccccCCCCCeEEEcCC
Q 048462           84 TELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPLDLRMDHLETLEIDRC  163 (325)
Q Consensus        84 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~l~~L~~L~l~~~  163 (325)
                      |.+       .......+..+++|+.|++++|.+..++.                         .+..+++|+.|++++|
T Consensus        98 N~l-------~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~-------------------------~~~~l~~L~~L~L~~N  145 (229)
T 3e6j_A           98 NQL-------TVLPSAVFDRLVHLKELFMCCNKLTELPR-------------------------GIERLTHLTHLALDQN  145 (229)
T ss_dssp             SCC-------CCCCTTTTTTCTTCCEEECCSSCCCSCCT-------------------------TGGGCTTCSEEECCSS
T ss_pred             CcC-------CccChhHhCcchhhCeEeccCCcccccCc-------------------------ccccCCCCCEEECCCC
Confidence            877       33334446677888888887776553321                         1346667777777776


Q ss_pred             CCceeccccCCCCCccccccccccEEEecCC
Q 048462          164 SLESKNDYFGDQGRTRTYCFRNLRHLSVKTC  194 (325)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  194 (325)
                      ......     ...+  ..+++|+.|+++++
T Consensus       146 ~l~~~~-----~~~~--~~l~~L~~L~l~~N  169 (229)
T 3e6j_A          146 QLKSIP-----HGAF--DRLSSLTHAYLFGN  169 (229)
T ss_dssp             CCCCCC-----TTTT--TTCTTCCEEECTTS
T ss_pred             cCCccC-----HHHH--hCCCCCCEEEeeCC
Confidence            543111     0111  34667777777766

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.44  E-value=8.5e-14  Score=109.62  Aligned_cols=134  Identities=20%  Similarity=0.224  Sum_probs=89.9

Q ss_pred             CCCcEEecCCCCCCC--cCchhhhCcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEE
Q 048462            2 HALAVLDLSYNLDLV--KLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVF   79 (325)
Q Consensus         2 ~~L~~L~l~~~~~~~--~lp~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L   79 (325)
                      ++|+.|++++| .++  .+|..+..+++|++|++++|.++.+ ..+..+++|++|++++|.+...+|.. +..+++|++|
T Consensus        24 ~~L~~L~l~~n-~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L  100 (168)
T 2ell_A           24 AAVRELVLDNC-KSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDML-AEKLPNLTHL  100 (168)
T ss_dssp             TSCSEEECCSC-BCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHH-HHHCTTCCEE
T ss_pred             ccCCEEECCCC-CCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHH-HhhCCCCCEE
Confidence            46777777777 565  6676677777778888777777666 55677777777777776665556654 6667777777


Q ss_pred             EecccceeeeeeccCcc-chhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccccccCCCCCeE
Q 048462           80 SWFSTELVELHYVDSTS-VLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPLDLRMDHLETL  158 (325)
Q Consensus        80 ~l~~~~~~~~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~l~~L~~L  158 (325)
                      ++++|.+       ... .+..+..+++|+.|++++|.....+...                     ...+..+++|+.|
T Consensus       101 ~Ls~N~l-------~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~---------------------~~~~~~l~~L~~L  152 (168)
T 2ell_A          101 NLSGNKL-------KDISTLEPLKKLECLKSLDLFNCEVTNLNDYR---------------------ESVFKLLPQLTYL  152 (168)
T ss_dssp             ECBSSSC-------CSSGGGGGGSSCSCCCEEECCSSGGGTSTTHH---------------------HHHHTTCSSCCEE
T ss_pred             eccCCcc-------CcchhHHHHhcCCCCCEEEeeCCcCcchHHHH---------------------HHHHHhCccCcEe
Confidence            7777776       221 2256667777777777777554432100                     0124577888888


Q ss_pred             EEcCCCCc
Q 048462          159 EIDRCSLE  166 (325)
Q Consensus       159 ~l~~~~~~  166 (325)
                      ++++|...
T Consensus       153 ~l~~n~~~  160 (168)
T 2ell_A          153 DGYDREDQ  160 (168)
T ss_dssp             TTEETTSC
T ss_pred             cCCCCChh
Confidence            88888764

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.44  E-value=3.4e-13  Score=119.54  Aligned_cols=173  Identities=17%  Similarity=0.171  Sum_probs=106.0

Q ss_pred             cEEecCCCCCCCcCchhhhCcccCceecCCCCcccccChh-hh-ccccCceeeccCCCCCeeechhhhhCCCcccEEEec
Q 048462            5 AVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTG-IT-YLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWF   82 (325)
Q Consensus         5 ~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~-l~-~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~   82 (325)
                      ++++++++ .++.+|..+.  ..+++|++++|.++.++.. +. ++++|++|++++|.+....+.. +..+++|++|+++
T Consensus        21 ~~l~c~~~-~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~-~~~l~~L~~L~Ls   96 (361)
T 2xot_A           21 NILSCSKQ-QLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEA-FVPVPNLRYLDLS   96 (361)
T ss_dssp             TEEECCSS-CCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTT-TTTCTTCCEEECC
T ss_pred             CEEEeCCC-CcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhh-ccCCCCCCEEECC
Confidence            46777777 7777776554  3577888888888766655 33 7888888888886555443344 7778888888888


Q ss_pred             ccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccccccCCCCCeEEEcC
Q 048462           83 STELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPLDLRMDHLETLEIDR  162 (325)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~l~~L~~L~l~~  162 (325)
                      +|.+       .......+..+++|+.|++++|.+..+..                        ..+..+++|+.|++++
T Consensus        97 ~N~l-------~~~~~~~~~~l~~L~~L~L~~N~i~~~~~------------------------~~~~~l~~L~~L~L~~  145 (361)
T 2xot_A           97 SNHL-------HTLDEFLFSDLQALEVLLLYNNHIVVVDR------------------------NAFEDMAQLQKLYLSQ  145 (361)
T ss_dssp             SSCC-------CEECTTTTTTCTTCCEEECCSSCCCEECT------------------------TTTTTCTTCCEEECCS
T ss_pred             CCcC-------CcCCHHHhCCCcCCCEEECCCCcccEECH------------------------HHhCCcccCCEEECCC
Confidence            8876       33334456777778888777776543311                        1144566677777776


Q ss_pred             CCCceeccccCCCCCccc-cccccccEEEecCCCCCCccc--cccCCCC--ccEEEEeccC
Q 048462          163 CSLESKNDYFGDQGRTRT-YCFRNLRHLSVKTCPCMTDLK--WIRYAPN--LQFLYVSYCP  218 (325)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~l~~l~--~~~~~~~--L~~L~l~~~~  218 (325)
                      |.......     ..+.. ..+++|++|+++++ .++.++  .+..++.  ++.|++.+|+
T Consensus       146 N~l~~l~~-----~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~~~l~~l~l~~N~  200 (361)
T 2xot_A          146 NQISRFPV-----ELIKDGNKLPKLMLLDLSSN-KLKKLPLTDLQKLPAWVKNGLYLHNNP  200 (361)
T ss_dssp             SCCCSCCG-----GGTC----CTTCCEEECCSS-CCCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred             CcCCeeCH-----HHhcCcccCCcCCEEECCCC-CCCccCHHHhhhccHhhcceEEecCCC
Confidence            66532111     01100 23567777777776 566554  2334454  3666666665

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.43  E-value=3.5e-13  Score=119.48  Aligned_cols=156  Identities=19%  Similarity=0.219  Sum_probs=116.6

Q ss_pred             CCCcEEecCCCCCCCcCchh-hh-CcccCceecCCCCcccccCh-hhhccccCceeeccCCCCCeeechhhhhCCCcccE
Q 048462            2 HALAVLDLSYNLDLVKLPEA-IG-KLINLCYLNLSNTRIGQLPT-GITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQV   78 (325)
Q Consensus         2 ~~L~~L~l~~~~~~~~lp~~-~~-~l~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~   78 (325)
                      +.++.|+|++| .++.++.. +. .+++|++|++++|.++.++. .+.++++|++|++++|.+.. ++...+..+++|+.
T Consensus        39 ~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~  116 (361)
T 2xot_A           39 SYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHT-LDEFLFSDLQALEV  116 (361)
T ss_dssp             TTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE-ECTTTTTTCTTCCE
T ss_pred             CCCCEEECCCC-CCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCc-CCHHHhCCCcCCCE
Confidence            46899999999 88888644 55 89999999999999987765 58999999999999976554 44433899999999


Q ss_pred             EEecccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCc-cccCCceEEEEceeeeecccc--cccCCC-
Q 048462           79 FSWFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSP-KLQSCIKRLAVVLMASFLLPL--DLRMDH-  154 (325)
Q Consensus        79 L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~l~~--l~~l~~-  154 (325)
                      |++++|.+       ....+..+..+++|+.|++++|.+..++...... ....+|+.|++++.....++.  +..++. 
T Consensus       117 L~L~~N~i-------~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~  189 (361)
T 2xot_A          117 LLLYNNHI-------VVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAW  189 (361)
T ss_dssp             EECCSSCC-------CEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHH
T ss_pred             EECCCCcc-------cEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHh
Confidence            99999998       4555677889999999999999887764432110 122346777777655545543  555555 


Q ss_pred             -CCeEEEcCCCCc
Q 048462          155 -LETLEIDRCSLE  166 (325)
Q Consensus       155 -L~~L~l~~~~~~  166 (325)
                       ++.|++.+|+..
T Consensus       190 ~l~~l~l~~N~~~  202 (361)
T 2xot_A          190 VKNGLYLHNNPLE  202 (361)
T ss_dssp             HHTTEECCSSCEE
T ss_pred             hcceEEecCCCcc
Confidence             366777776653

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.42  E-value=1.3e-12  Score=107.60  Aligned_cols=148  Identities=16%  Similarity=0.179  Sum_probs=104.0

Q ss_pred             cEEecCCCCCCCcCchhhhCcccCceecCCCCcccccCh--hhhccccCceeeccCCCCCeeechhhhhCCCcccEEEec
Q 048462            5 AVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPT--GITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWF   82 (325)
Q Consensus         5 ~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~--~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~   82 (325)
                      +.++++++ .++.+|..+.  ..+++|++++|.++.++.  .+.++++|++|++++|.+....+.. +..+++|++|+++
T Consensus        14 ~~l~~s~n-~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~-~~~l~~L~~L~Ls   89 (220)
T 2v70_A           14 TTVDCSNQ-KLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGA-FEGASGVNEILLT   89 (220)
T ss_dssp             TEEECCSS-CCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTT-TTTCTTCCEEECC
T ss_pred             CEeEeCCC-CcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHH-hCCCCCCCEEECC
Confidence            57889998 7888887664  457899999999887743  3788999999999997655544445 8899999999999


Q ss_pred             ccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccccccCCCCCeEEEcC
Q 048462           83 STELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPLDLRMDHLETLEIDR  162 (325)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~l~~L~~L~l~~  162 (325)
                      +|.+       ....+..+..+++|+.|++++|.+..+..                        ..+..+++|+.|++++
T Consensus        90 ~N~l-------~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~------------------------~~~~~l~~L~~L~L~~  138 (220)
T 2v70_A           90 SNRL-------ENVQHKMFKGLESLKTLMLRSNRITCVGN------------------------DSFIGLSSVRLLSLYD  138 (220)
T ss_dssp             SSCC-------CCCCGGGGTTCSSCCEEECTTSCCCCBCT------------------------TSSTTCTTCSEEECTT
T ss_pred             CCcc-------CccCHhHhcCCcCCCEEECCCCcCCeECH------------------------hHcCCCccCCEEECCC
Confidence            9988       45555668888899999888887654321                        1134566677777776


Q ss_pred             CCCceeccccCCCCCccccccccccEEEecCC
Q 048462          163 CSLESKNDYFGDQGRTRTYCFRNLRHLSVKTC  194 (325)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  194 (325)
                      |......     +..+  ..+++|++|+++++
T Consensus       139 N~l~~~~-----~~~~--~~l~~L~~L~L~~N  163 (220)
T 2v70_A          139 NQITTVA-----PGAF--DTLHSLSTLNLLAN  163 (220)
T ss_dssp             SCCCCBC-----TTTT--TTCTTCCEEECCSC
T ss_pred             CcCCEEC-----HHHh--cCCCCCCEEEecCc
Confidence            6653110     1111  34666777777766

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.41  E-value=1.4e-13  Score=106.04  Aligned_cols=109  Identities=19%  Similarity=0.259  Sum_probs=89.5

Q ss_pred             CCCcEEecCCCCCCC--cCchhhhCcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEE
Q 048462            2 HALAVLDLSYNLDLV--KLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVF   79 (325)
Q Consensus         2 ~~L~~L~l~~~~~~~--~lp~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L   79 (325)
                      ++|+.|++++| .++  .+|..+..+++|++|++++|.++.+ ..+.++++|++|++++|.+...+|.. +..+++|++|
T Consensus        17 ~~l~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~-~~~l~~L~~L   93 (149)
T 2je0_A           17 SDVKELVLDNS-RSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVL-AEKCPNLTHL   93 (149)
T ss_dssp             GGCSEEECTTC-BCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHH-HHHCTTCCEE
T ss_pred             ccCeEEEccCC-cCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHH-hhhCCCCCEE
Confidence            56899999999 676  7888888999999999999988777 66888999999999998776667765 7779999999


Q ss_pred             EecccceeeeeeccCc-cchhhhccCCCcceEEEEecCcccc
Q 048462           80 SWFSTELVELHYVDST-SVLAELESLENIHDISVTLCNVDAV  120 (325)
Q Consensus        80 ~l~~~~~~~~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~  120 (325)
                      ++++|.+       .. ..+..+..+++|+.|++++|.....
T Consensus        94 ~ls~N~i-------~~~~~~~~~~~l~~L~~L~l~~N~l~~~  128 (149)
T 2je0_A           94 NLSGNKI-------KDLSTIEPLKKLENLKSLDLFNCEVTNL  128 (149)
T ss_dssp             ECTTSCC-------CSHHHHGGGGGCTTCCEEECTTCGGGGS
T ss_pred             ECCCCcC-------CChHHHHHHhhCCCCCEEeCcCCcccch
Confidence            9999987       33 2347788889999999988876554

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.39  E-value=3.6e-12  Score=104.88  Aligned_cols=150  Identities=12%  Similarity=0.149  Sum_probs=111.7

Q ss_pred             CceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEecccceeeeeeccCccchhhhccCCCc
Q 048462           28 LCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLAELESLENI  107 (325)
Q Consensus        28 L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L  107 (325)
                      -+.++.+++.++++|..+.  ++|+.|++++|.+....+.. +..+++|+.|++++|.+       ....+..+..+++|
T Consensus        13 ~~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~-~~~l~~L~~L~Ls~N~i-------~~~~~~~~~~l~~L   82 (220)
T 2v9t_B           13 NNIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGA-FSPYKKLRRIDLSNNQI-------SELAPDAFQGLRSL   82 (220)
T ss_dssp             TTEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTS-STTCTTCCEEECCSSCC-------CEECTTTTTTCSSC
T ss_pred             CCEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhH-hhCCCCCCEEECCCCcC-------CCcCHHHhhCCcCC
Confidence            3678888999999988654  78999999997665544444 88999999999999988       55557788889999


Q ss_pred             ceEEEEecCcccccccccCccccCCceEEEEceeeeecccccccCCCCCeEEEcCCCCceeccccCCCCCcccccccccc
Q 048462          108 HDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPLDLRMDHLETLEIDRCSLESKNDYFGDQGRTRTYCFRNLR  187 (325)
Q Consensus       108 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~  187 (325)
                      +.|++++|.+..++.                        ..+..+++|+.|++++|......     +..+  ..+++|+
T Consensus        83 ~~L~Ls~N~l~~l~~------------------------~~f~~l~~L~~L~L~~N~l~~~~-----~~~~--~~l~~L~  131 (220)
T 2v9t_B           83 NSLVLYGNKITELPK------------------------SLFEGLFSLQLLLLNANKINCLR-----VDAF--QDLHNLN  131 (220)
T ss_dssp             CEEECCSSCCCCCCT------------------------TTTTTCTTCCEEECCSSCCCCCC-----TTTT--TTCTTCC
T ss_pred             CEEECCCCcCCccCH------------------------hHccCCCCCCEEECCCCCCCEeC-----HHHc--CCCCCCC
Confidence            999998886554321                        11457788999999988764211     1111  4578899


Q ss_pred             EEEecCCCCCCcccc--ccCCCCccEEEEeccCC
Q 048462          188 HLSVKTCPCMTDLKW--IRYAPNLQFLYVSYCPR  219 (325)
Q Consensus       188 ~L~l~~~~~l~~l~~--~~~~~~L~~L~l~~~~~  219 (325)
                      +|+++++ .++.++.  +..+++|++|++++|+.
T Consensus       132 ~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~  164 (220)
T 2v9t_B          132 LLSLYDN-KLQTIAKGTFSPLRAIQTMHLAQNPF  164 (220)
T ss_dssp             EEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred             EEECCCC-cCCEECHHHHhCCCCCCEEEeCCCCc
Confidence            9999988 7777653  66788888888888763

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.38  E-value=1.8e-12  Score=104.41  Aligned_cols=127  Identities=14%  Similarity=0.190  Sum_probs=100.4

Q ss_pred             cEEecCCCCCCCcCchhhhCcccCceecCCCCcccccChh--hhccccCceeeccCCCCCeeechhhhhCCCcccEEEec
Q 048462            5 AVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTG--ITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWF   82 (325)
Q Consensus         5 ~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~--l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~   82 (325)
                      ++++++++ .++.+|..+..  +|++|++++|.++.++..  +.++++|++|++++|.+.+..|.. +..+++|++|+++
T Consensus        11 ~~l~~s~~-~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~Ls   86 (192)
T 1w8a_A           11 TTVDCTGR-GLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNA-FEGASHIQELQLG   86 (192)
T ss_dssp             TEEECTTS-CCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTT-TTTCTTCCEEECC
T ss_pred             CEEEcCCC-CcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhH-cCCcccCCEEECC
Confidence            68999999 88999876654  899999999999888764  789999999999998777666766 8999999999999


Q ss_pred             ccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccccccCCCCCeEEEcC
Q 048462           83 STELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPLDLRMDHLETLEIDR  162 (325)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~l~~L~~L~l~~  162 (325)
                      +|.+       ....+..+..+++|+.|++++|....+..                        ..+..+++|++|++++
T Consensus        87 ~N~l-------~~~~~~~~~~l~~L~~L~L~~N~l~~~~~------------------------~~~~~l~~L~~L~L~~  135 (192)
T 1w8a_A           87 ENKI-------KEISNKMFLGLHQLKTLNLYDNQISCVMP------------------------GSFEHLNSLTSLNLAS  135 (192)
T ss_dssp             SCCC-------CEECSSSSTTCTTCCEEECCSSCCCEECT------------------------TSSTTCTTCCEEECTT
T ss_pred             CCcC-------CccCHHHhcCCCCCCEEECCCCcCCeeCH------------------------HHhhcCCCCCEEEeCC
Confidence            9988       44445557788889999988887554311                        1145677888888888


Q ss_pred             CCCc
Q 048462          163 CSLE  166 (325)
Q Consensus       163 ~~~~  166 (325)
                      |...
T Consensus       136 N~l~  139 (192)
T 1w8a_A          136 NPFN  139 (192)
T ss_dssp             CCBC
T ss_pred             CCcc
Confidence            8753

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.38  E-value=2e-12  Score=107.07  Aligned_cols=131  Identities=23%  Similarity=0.336  Sum_probs=107.4

Q ss_pred             CCCcEEecCCCCCCCcC-chhhhCcccCceecCCCCcccccChh-hhccccCceeeccCCCCCeeechhhhhCCCcccEE
Q 048462            2 HALAVLDLSYNLDLVKL-PEAIGKLINLCYLNLSNTRIGQLPTG-ITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVF   79 (325)
Q Consensus         2 ~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~l~~~~l~~lp~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L   79 (325)
                      ++|++|++++| .++.+ |..+..+++|++|++++|.++.+|.. +..+++|++|++++|.+.. ++...+..+++|++|
T Consensus        40 ~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~~l~~L~~L  117 (229)
T 3e6j_A           40 TNAQILYLHDN-QITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV-LPSAVFDRLVHLKEL  117 (229)
T ss_dssp             TTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEE
T ss_pred             CCCCEEEcCCC-ccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCc-cChhHhCcchhhCeE
Confidence            57999999999 78877 67799999999999999999888765 5889999999999976654 554437899999999


Q ss_pred             EecccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccccccCCCCCeEE
Q 048462           80 SWFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPLDLRMDHLETLE  159 (325)
Q Consensus        80 ~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~l~~L~~L~  159 (325)
                      ++++|.+        ..++..+..+++|+.|++++|.+..++.                        ..+..+++|+.|+
T Consensus       118 ~Ls~N~l--------~~lp~~~~~l~~L~~L~L~~N~l~~~~~------------------------~~~~~l~~L~~L~  165 (229)
T 3e6j_A          118 FMCCNKL--------TELPRGIERLTHLTHLALDQNQLKSIPH------------------------GAFDRLSSLTHAY  165 (229)
T ss_dssp             ECCSSCC--------CSCCTTGGGCTTCSEEECCSSCCCCCCT------------------------TTTTTCTTCCEEE
T ss_pred             eccCCcc--------cccCcccccCCCCCEEECCCCcCCccCH------------------------HHHhCCCCCCEEE
Confidence            9999998        3667788999999999999987654321                        1144678888999


Q ss_pred             EcCCCCc
Q 048462          160 IDRCSLE  166 (325)
Q Consensus       160 l~~~~~~  166 (325)
                      +.+|+..
T Consensus       166 l~~N~~~  172 (229)
T 3e6j_A          166 LFGNPWD  172 (229)
T ss_dssp             CTTSCBC
T ss_pred             eeCCCcc
Confidence            9888764

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.36  E-value=4e-12  Score=102.38  Aligned_cols=127  Identities=18%  Similarity=0.220  Sum_probs=100.4

Q ss_pred             cEEecCCCCCCCcCchhhhCcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEeccc
Q 048462            5 AVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWFST   84 (325)
Q Consensus         5 ~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~   84 (325)
                      ++++++++ .++.+|..+.  ++|++|++++|.++.+|..+.++++|++|++++|.+....+.. +..+++|++|++++|
T Consensus        13 ~~l~~~~~-~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~-f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           13 TVVRCSNK-GLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQS-FSNMTQLLTLILSYN   88 (193)
T ss_dssp             TEEECTTS-CCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTT-TTTCTTCCEEECCSS
T ss_pred             CEEEcCCC-CCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhH-ccCCCCCCEEECCCC
Confidence            57899999 8888887654  6899999999999999988999999999999997766544455 899999999999999


Q ss_pred             ceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccccccCCCCCeEEEcCCC
Q 048462           85 ELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPLDLRMDHLETLEIDRCS  164 (325)
Q Consensus        85 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~l~~L~~L~l~~~~  164 (325)
                      .+       ....+..+..+++|+.|++++|.+..++.                        ..+..+++|+.|++++|+
T Consensus        89 ~l-------~~i~~~~f~~l~~L~~L~L~~N~l~~~~~------------------------~~~~~l~~L~~L~L~~N~  137 (193)
T 2wfh_A           89 RL-------RCIPPRTFDGLKSLRLLSLHGNDISVVPE------------------------GAFNDLSALSHLAIGANP  137 (193)
T ss_dssp             CC-------CBCCTTTTTTCTTCCEEECCSSCCCBCCT------------------------TTTTTCTTCCEEECCSSC
T ss_pred             cc-------CEeCHHHhCCCCCCCEEECCCCCCCeeCh------------------------hhhhcCccccEEEeCCCC
Confidence            88       45555678888999999998887654321                        114466778888888877


Q ss_pred             Cc
Q 048462          165 LE  166 (325)
Q Consensus       165 ~~  166 (325)
                      ..
T Consensus       138 ~~  139 (193)
T 2wfh_A          138 LY  139 (193)
T ss_dssp             EE
T ss_pred             ee
Confidence            53

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.32  E-value=3.6e-12  Score=101.04  Aligned_cols=133  Identities=17%  Similarity=0.242  Sum_probs=92.7

Q ss_pred             CCCCcEEecCCCCCCCcCchhhhCcc-cCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEE
Q 048462            1 MHALAVLDLSYNLDLVKLPEAIGKLI-NLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVF   79 (325)
Q Consensus         1 ~~~L~~L~l~~~~~~~~lp~~~~~l~-~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L   79 (325)
                      +.+|+.|++++| .++.+|. +..+. +|++|++++|.++.+ ..+.++++|++|++++|.+. .+|...+..+++|++|
T Consensus        18 ~~~L~~L~l~~n-~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L   93 (176)
T 1a9n_A           18 AVRDRELDLRGY-KIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDLTEL   93 (176)
T ss_dssp             TTSCEEEECTTS-CCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTTCCEE
T ss_pred             cCCceEEEeeCC-CCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCccc-ccCcchhhcCCCCCEE
Confidence            357888888888 7777754 44444 888888888888777 56788888888888886654 4554425788888888


Q ss_pred             EecccceeeeeeccCccchh--hhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccccccCCCCCe
Q 048462           80 SWFSTELVELHYVDSTSVLA--ELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPLDLRMDHLET  157 (325)
Q Consensus        80 ~l~~~~~~~~~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~l~~L~~  157 (325)
                      ++++|.+        ...+.  .+..+++|+.|++++|.....+...                     ...+..+++|+.
T Consensus        94 ~L~~N~i--------~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~---------------------~~~~~~l~~L~~  144 (176)
T 1a9n_A           94 ILTNNSL--------VELGDLDPLASLKSLTYLCILRNPVTNKKHYR---------------------LYVIYKVPQVRV  144 (176)
T ss_dssp             ECCSCCC--------CCGGGGGGGGGCTTCCEEECCSSGGGGSTTHH---------------------HHHHHHCTTCSE
T ss_pred             ECCCCcC--------CcchhhHhhhcCCCCCEEEecCCCCCCcHhHH---------------------HHHHHHCCccce
Confidence            8888876        23333  6777888888888887655432110                     001457788888


Q ss_pred             EEEcCCCCc
Q 048462          158 LEIDRCSLE  166 (325)
Q Consensus       158 L~l~~~~~~  166 (325)
                      |+++++...
T Consensus       145 Ld~~~n~~~  153 (176)
T 1a9n_A          145 LDFQKVKLK  153 (176)
T ss_dssp             ETTEECCHH
T ss_pred             eCCCcCCHH
Confidence            888877653

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.32  E-value=4.1e-12  Score=104.51  Aligned_cols=131  Identities=17%  Similarity=0.137  Sum_probs=105.4

Q ss_pred             CCCcEEecCCCCCCCcCc--hhhhCcccCceecCCCCcccccCh-hhhccccCceeeccCCCCCeeechhhhhCCCcccE
Q 048462            2 HALAVLDLSYNLDLVKLP--EAIGKLINLCYLNLSNTRIGQLPT-GITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQV   78 (325)
Q Consensus         2 ~~L~~L~l~~~~~~~~lp--~~~~~l~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~   78 (325)
                      +.+++|++++| .++.++  ..+..+++|++|++++|.++.++. .+.++++|++|++++|.+....+.. +..+++|++
T Consensus        32 ~~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~  109 (220)
T 2v70_A           32 QYTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKM-FKGLESLKT  109 (220)
T ss_dssp             TTCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGG-GTTCSSCCE
T ss_pred             CCCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhH-hcCCcCCCE
Confidence            46789999999 888773  348899999999999999987766 6899999999999997776555555 899999999


Q ss_pred             EEecccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeee
Q 048462           79 FSWFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMAS  143 (325)
Q Consensus        79 L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  143 (325)
                      |++++|.+       ....+..+..+++|+.|++++|....+...  ......+|+.|++++...
T Consensus       110 L~Ls~N~l-------~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--~~~~l~~L~~L~L~~N~l  165 (220)
T 2v70_A          110 LMLRSNRI-------TCVGNDSFIGLSSVRLLSLYDNQITTVAPG--AFDTLHSLSTLNLLANPF  165 (220)
T ss_dssp             EECTTSCC-------CCBCTTSSTTCTTCSEEECTTSCCCCBCTT--TTTTCTTCCEEECCSCCE
T ss_pred             EECCCCcC-------CeECHhHcCCCccCCEEECCCCcCCEECHH--HhcCCCCCCEEEecCcCC
Confidence            99999998       555577888999999999999988766321  112234589999986544

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.31  E-value=3.4e-12  Score=100.32  Aligned_cols=138  Identities=14%  Similarity=0.149  Sum_probs=104.6

Q ss_pred             CcccCceecCCCCccc--ccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEecccceeeeeeccCccchhhh
Q 048462           24 KLINLCYLNLSNTRIG--QLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLAEL  101 (325)
Q Consensus        24 ~l~~L~~L~l~~~~l~--~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l  101 (325)
                      ..++|++|++++|.++  .+|..+.++++|++|++++|.+...  .. +..+++|++|++++|.+       ....+..+
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~-~~~l~~L~~L~Ls~N~l-------~~~~~~~~   91 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SN-LPKLPKLKKLELSENRI-------FGGLDMLA   91 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SS-CCCCSSCCEEEEESCCC-------CSCCCHHH
T ss_pred             CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hh-hccCCCCCEEECcCCcC-------chHHHHHH
Confidence            3478999999999987  8888889999999999999775544  34 88999999999999988       44466666


Q ss_pred             ccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccccccCCCCCeEEEcCCCCceeccccCCCCCc--c
Q 048462          102 ESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPLDLRMDHLETLEIDRCSLESKNDYFGDQGRT--R  179 (325)
Q Consensus       102 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~--~  179 (325)
                      ..+++|+.|++++|....++.                       ++.+..+++|+.|++++|......      ...  .
T Consensus        92 ~~l~~L~~L~Ls~N~l~~~~~-----------------------~~~l~~l~~L~~L~l~~N~l~~~~------~~~~~~  142 (168)
T 2ell_A           92 EKLPNLTHLNLSGNKLKDIST-----------------------LEPLKKLECLKSLDLFNCEVTNLN------DYRESV  142 (168)
T ss_dssp             HHCTTCCEEECBSSSCCSSGG-----------------------GGGGSSCSCCCEEECCSSGGGTST------THHHHH
T ss_pred             hhCCCCCEEeccCCccCcchh-----------------------HHHHhcCCCCCEEEeeCCcCcchH------HHHHHH
Confidence            779999999998887654321                       123557889999999999864211      100  0


Q ss_pred             ccccccccEEEecCCCCCCccc
Q 048462          180 TYCFRNLRHLSVKTCPCMTDLK  201 (325)
Q Consensus       180 ~~~~~~L~~L~l~~~~~l~~l~  201 (325)
                      ...+++|++|++++| ...+++
T Consensus       143 ~~~l~~L~~L~l~~n-~~~~~~  163 (168)
T 2ell_A          143 FKLLPQLTYLDGYDR-EDQEAP  163 (168)
T ss_dssp             HTTCSSCCEETTEET-TSCBCC
T ss_pred             HHhCccCcEecCCCC-Chhhcc
Confidence            156899999999999 566554

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.31  E-value=5.3e-12  Score=118.17  Aligned_cols=107  Identities=22%  Similarity=0.296  Sum_probs=93.2

Q ss_pred             CCcEEecCCCCCCCcCchhhhCcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEec
Q 048462            3 ALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWF   82 (325)
Q Consensus         3 ~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~   82 (325)
                      .|++|++++| .++.+|. ++.+++|++|++++|.++.+|..+.++++|++|++++|.+.+ +| . ++.+++|+.|+++
T Consensus       442 ~L~~L~Ls~n-~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~-l~~l~~L~~L~Ls  516 (567)
T 1dce_A          442 DVRVLHLAHK-DLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN-VD-G-VANLPRLQELLLC  516 (567)
T ss_dssp             TCSEEECTTS-CCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC-CG-G-GTTCSSCCEEECC
T ss_pred             CceEEEecCC-CCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCC-Cc-c-cCCCCCCcEEECC
Confidence            5889999999 8889987 999999999999999999999999999999999999976554 77 4 9999999999999


Q ss_pred             ccceeeeeeccCccc-hhhhccCCCcceEEEEecCccccc
Q 048462           83 STELVELHYVDSTSV-LAELESLENIHDISVTLCNVDAVN  121 (325)
Q Consensus        83 ~~~~~~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~  121 (325)
                      +|.+       .... +..+..+++|+.|++++|.....+
T Consensus       517 ~N~l-------~~~~~p~~l~~l~~L~~L~L~~N~l~~~~  549 (567)
T 1dce_A          517 NNRL-------QQSAAIQPLVSCPRLVLLNLQGNSLCQEE  549 (567)
T ss_dssp             SSCC-------CSSSTTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred             CCCC-------CCCCCcHHHhcCCCCCEEEecCCcCCCCc
Confidence            9988       4443 788999999999999998876543

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.30  E-value=9e-12  Score=100.29  Aligned_cols=108  Identities=20%  Similarity=0.314  Sum_probs=92.8

Q ss_pred             CCCcEEecCCCCCCCcCchhhhCcccCceecCCCCcccccCh-hhhccccCceeeccCCCCCeeechhhhhCCCcccEEE
Q 048462            2 HALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPT-GITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFS   80 (325)
Q Consensus         2 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~   80 (325)
                      ++|++|++++| .++.+|..+..+++|++|++++|.++.++. .+.++++|++|++++|.+....+.. +..+++|++|+
T Consensus        31 ~~l~~L~L~~n-~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~-f~~l~~L~~L~  108 (193)
T 2wfh_A           31 RDVTELYLDGN-QFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRT-FDGLKSLRLLS  108 (193)
T ss_dssp             TTCCEEECCSS-CCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTT-TTTCTTCCEEE
T ss_pred             CCCCEEECCCC-cCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHH-hCCCCCCCEEE
Confidence            57999999999 899999999999999999999999987765 5889999999999997766555555 99999999999


Q ss_pred             ecccceeeeeeccCccchhhhccCCCcceEEEEecCcc
Q 048462           81 WFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVD  118 (325)
Q Consensus        81 l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  118 (325)
                      +++|.+       .......+..+++|+.|++.+|.+.
T Consensus       109 L~~N~l-------~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A          109 LHGNDI-------SVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             CCSSCC-------CBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CCCCCC-------CeeChhhhhcCccccEEEeCCCCee
Confidence            999998       4444446788999999999988754

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.28  E-value=7.6e-12  Score=100.65  Aligned_cols=109  Identities=16%  Similarity=0.271  Sum_probs=94.3

Q ss_pred             CCCcEEecCCCCCCCcCch--hhhCcccCceecCCCCccccc-ChhhhccccCceeeccCCCCCeeechhhhhCCCcccE
Q 048462            2 HALAVLDLSYNLDLVKLPE--AIGKLINLCYLNLSNTRIGQL-PTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQV   78 (325)
Q Consensus         2 ~~L~~L~l~~~~~~~~lp~--~~~~l~~L~~L~l~~~~l~~l-p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~   78 (325)
                      +++++|++++| .++.++.  .+..+++|++|++++|.++.+ |..+.++++|++|++++|.+....+.. +..+++|++
T Consensus        29 ~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~  106 (192)
T 1w8a_A           29 LHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKM-FLGLHQLKT  106 (192)
T ss_dssp             TTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSS-STTCTTCCE
T ss_pred             CCCCEEECCCC-cCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHH-hcCCCCCCE
Confidence            47899999999 8888865  389999999999999999766 677999999999999998776666655 889999999


Q ss_pred             EEecccceeeeeeccCccchhhhccCCCcceEEEEecCccc
Q 048462           79 FSWFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDA  119 (325)
Q Consensus        79 L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  119 (325)
                      |++++|.+       ....+..+..+++|+.|++++|....
T Consensus       107 L~L~~N~l-------~~~~~~~~~~l~~L~~L~L~~N~l~c  140 (192)
T 1w8a_A          107 LNLYDNQI-------SCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             EECCSSCC-------CEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             EECCCCcC-------CeeCHHHhhcCCCCCEEEeCCCCccC
Confidence            99999998       55567788899999999999987653

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.22  E-value=1.4e-11  Score=118.66  Aligned_cols=108  Identities=26%  Similarity=0.329  Sum_probs=94.7

Q ss_pred             CCCCcEEecCCCCCCCcCchhhhCcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEE
Q 048462            1 MHALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFS   80 (325)
Q Consensus         1 ~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~   80 (325)
                      ++.|+.|+|++| .+..+|..+..+++|++|+|++|.++.+|..+.++++|++|++++|.+. .+|.. +.++++|++|+
T Consensus       223 l~~L~~L~Ls~n-~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~-~~~l~~L~~L~  299 (727)
T 4b8c_D          223 DQLWHALDLSNL-QIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT-SLPAE-LGSCFQLKYFY  299 (727)
T ss_dssp             CCCCCEEECTTS-CCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS-SCCSS-GGGGTTCSEEE
T ss_pred             CCCCcEEECCCC-CCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC-ccChh-hcCCCCCCEEE
Confidence            467899999999 7888988888999999999999999999998999999999999997766 77887 89999999999


Q ss_pred             ecccceeeeeeccCccchhhhccCCCcceEEEEecCccc
Q 048462           81 WFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDA  119 (325)
Q Consensus        81 l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  119 (325)
                      +++|.+        ..++..+..+++|+.|++++|.+.+
T Consensus       300 L~~N~l--------~~lp~~~~~l~~L~~L~L~~N~l~~  330 (727)
T 4b8c_D          300 FFDNMV--------TTLPWEFGNLCNLQFLGVEGNPLEK  330 (727)
T ss_dssp             CCSSCC--------CCCCSSTTSCTTCCCEECTTSCCCS
T ss_pred             CCCCCC--------CccChhhhcCCCccEEeCCCCccCC
Confidence            999987        3667778999999999999998664

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.21  E-value=1.1e-11  Score=95.29  Aligned_cols=103  Identities=20%  Similarity=0.221  Sum_probs=85.0

Q ss_pred             CCCCcEEecCCCCCCCcCchhhhCcccCceecCCCCcccc-cChhhhccccCceeeccCCCCCee-echhhhhCCCcccE
Q 048462            1 MHALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQ-LPTGITYLKNLKILRLDGMRYLAF-VPCQVISSLSSLQV   78 (325)
Q Consensus         1 ~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~-lp~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~~l~~L~~   78 (325)
                      +++|++|++++| .++.+ ..++.+++|++|++++|.++. +|..+.++++|++|++++|.+... .+.. +..+++|++
T Consensus        41 l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~-~~~l~~L~~  117 (149)
T 2je0_A           41 FEELEFLSTINV-GLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEP-LKKLENLKS  117 (149)
T ss_dssp             CTTCCEEECTTS-CCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGG-GGGCTTCCE
T ss_pred             cCCCcEEECcCC-CCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHH-HhhCCCCCE
Confidence            578999999999 88887 778999999999999999976 777778899999999999775542 2255 899999999


Q ss_pred             EEecccceeeeeeccCccch---hhhccCCCcceEEEE
Q 048462           79 FSWFSTELVELHYVDSTSVL---AELESLENIHDISVT  113 (325)
Q Consensus        79 L~l~~~~~~~~~~~~~~~~~---~~l~~l~~L~~L~l~  113 (325)
                      |++++|.+       .....   ..+..+++|+.|+++
T Consensus       118 L~l~~N~l-------~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A          118 LDLFNCEV-------TNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             EECTTCGG-------GGSTTHHHHHHHHCTTCCEETTB
T ss_pred             EeCcCCcc-------cchHHHHHHHHHHCCCcccccCC
Confidence            99999987       32222   467888999888653

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.20  E-value=2.8e-11  Score=105.74  Aligned_cols=100  Identities=17%  Similarity=0.096  Sum_probs=71.4

Q ss_pred             ccccccEEEecCCCCCCccc--cccCCCCccEEEEeccCCchhhcccCCCCCCCccccccccCCccc-EEeccCCCCcce
Q 048462          182 CFRNLRHLSVKTCPCMTDLK--WIRYAPNLQFLYVSYCPRLSEIIGTYESPGTSEIEESQDFFSNLM-VIDLRHLPSLTS  258 (325)
Q Consensus       182 ~~~~L~~L~l~~~~~l~~l~--~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~l~~  258 (325)
                      .+++|+.+++.++ .++.++  .+..+++|+.|++.++  ++.+..           ..+..+++|+ .+.+.+  .++.
T Consensus       224 ~~~~L~~l~L~~n-~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~-----------~aF~~~~~L~~~l~l~~--~l~~  287 (329)
T 3sb4_A          224 YMPNLVSLDISKT-NATTIPDFTFAQKKYLLKIKLPHN--LKTIGQ-----------RVFSNCGRLAGTLELPA--SVTA  287 (329)
T ss_dssp             HCTTCCEEECTTB-CCCEECTTTTTTCTTCCEEECCTT--CCEECT-----------TTTTTCTTCCEEEEECT--TCCE
T ss_pred             hcCCCeEEECCCC-CcceecHhhhhCCCCCCEEECCcc--cceehH-----------HHhhCChhccEEEEEcc--cceE
Confidence            3788999999887 677765  4667888999988876  555554           3667888898 888886  6667


Q ss_pred             eccC-cccCCCccEEeeeCCCCCCCCCCCCCCcccceeEEe
Q 048462          259 ICCG-VVPFPSLQTISVNGCPSLRKLPLNSGSAKNSLNAIR  298 (325)
Q Consensus       259 ~~~~-~~~~~~L~~L~l~~c~~l~~ip~~~~~~~~~l~~~~  298 (325)
                      +... ...|++|+.+++.+. .++.|+.........++.++
T Consensus       288 I~~~aF~~c~~L~~l~l~~n-~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          288 IEFGAFMGCDNLRYVLATGD-KITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             ECTTTTTTCTTEEEEEECSS-CCCEECTTTTCTTCCCCEEE
T ss_pred             EchhhhhCCccCCEEEeCCC-ccCccchhhhcCCcchhhhc
Confidence            6544 335788999998664 78888765544445555554

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.19  E-value=2.5e-10  Score=99.70  Aligned_cols=100  Identities=12%  Similarity=-0.020  Sum_probs=72.4

Q ss_pred             cCCCCCeEEEcCCCCceeccccCCCCCccccccccccEEEecCCCCCCccc--cccCCCCcc-EEEEeccCCchhhcccC
Q 048462          151 RMDHLETLEIDRCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDLK--WIRYAPNLQ-FLYVSYCPRLSEIIGTY  227 (325)
Q Consensus       151 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~--~~~~~~~L~-~L~l~~~~~l~~~~~~~  227 (325)
                      .+++|+.+++++|....+.     .+.+  ..+.+|+++++.+.  ++.++  .+..+++|+ .+.+.+  .++.+..  
T Consensus       224 ~~~~L~~l~L~~n~i~~I~-----~~aF--~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~--  290 (329)
T 3sb4_A          224 YMPNLVSLDISKTNATTIP-----DFTF--AQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEF--  290 (329)
T ss_dssp             HCTTCCEEECTTBCCCEEC-----TTTT--TTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECT--
T ss_pred             hcCCCeEEECCCCCcceec-----Hhhh--hCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEch--
Confidence            4889999999988754332     1222  46889999999885  66664  466789999 999987  4566554  


Q ss_pred             CCCCCCccccccccCCcccEEeccCCCCcceeccCc-ccCCCccEEe
Q 048462          228 ESPGTSEIEESQDFFSNLMVIDLRHLPSLTSICCGV-VPFPSLQTIS  273 (325)
Q Consensus       228 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~~L~~L~  273 (325)
                               ..+..+++|+.+++.++ .+..+.... ..+++|+.+.
T Consensus       291 ---------~aF~~c~~L~~l~l~~n-~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          291 ---------GAFMGCDNLRYVLATGD-KITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             ---------TTTTTCTTEEEEEECSS-CCCEECTTTTCTTCCCCEEE
T ss_pred             ---------hhhhCCccCCEEEeCCC-ccCccchhhhcCCcchhhhc
Confidence                     47778999999999774 677776643 3467777765

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.18  E-value=1.5e-10  Score=91.71  Aligned_cols=128  Identities=16%  Similarity=0.265  Sum_probs=92.8

Q ss_pred             CcEEecCCCCCCCcCchhhhCcccCceecCCCCcccccChh-hhccccCceeeccCCCCCeeechhhhhCCCcccEEEec
Q 048462            4 LAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTG-ITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWF   82 (325)
Q Consensus         4 L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~   82 (325)
                      .+.++++++ .++.+|..+.  .+|++|++++|.++.++.. +.++++|++|++++|.+. .++...+..+++|+.|+++
T Consensus         9 ~~~l~~~~~-~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~   84 (177)
T 2o6r_A            9 GTEIRCNSK-GLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLH   84 (177)
T ss_dssp             TTEEECCSS-CCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred             CCEEEecCC-CCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcce-EeChhHccCCCccCEEECC
Confidence            467888888 7888875543  6899999999988777664 578899999999987655 4444326889999999999


Q ss_pred             ccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccccccCCCCCeEEEcC
Q 048462           83 STELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPLDLRMDHLETLEIDR  162 (325)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~l~~L~~L~l~~  162 (325)
                      +|.+       .......+..+++|+.|++++|....++.                        ..+..+++|+.|++++
T Consensus        85 ~N~l-------~~~~~~~~~~l~~L~~L~l~~N~l~~~~~------------------------~~~~~l~~L~~L~l~~  133 (177)
T 2o6r_A           85 ENKL-------QSLPNGVFDKLTQLKELALDTNQLKSVPD------------------------GIFDRLTSLQKIWLHT  133 (177)
T ss_dssp             SSCC-------CCCCTTTTTTCTTCCEEECCSSCCSCCCT------------------------TTTTTCTTCCEEECCS
T ss_pred             CCCc-------cccCHHHhhCCcccCEEECcCCcceEeCH------------------------HHhcCCcccCEEEecC
Confidence            9887       44444456778888888888876553321                        0134667788888888


Q ss_pred             CCCc
Q 048462          163 CSLE  166 (325)
Q Consensus       163 ~~~~  166 (325)
                      |...
T Consensus       134 N~~~  137 (177)
T 2o6r_A          134 NPWD  137 (177)
T ss_dssp             SCBC
T ss_pred             CCee
Confidence            7753

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.18  E-value=9.3e-11  Score=92.89  Aligned_cols=109  Identities=25%  Similarity=0.333  Sum_probs=89.8

Q ss_pred             CCCcEEecCCCCCCCcCch-hhhCcccCceecCCCCcccccChh-hhccccCceeeccCCCCCeeechhhhhCCCcccEE
Q 048462            2 HALAVLDLSYNLDLVKLPE-AIGKLINLCYLNLSNTRIGQLPTG-ITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVF   79 (325)
Q Consensus         2 ~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~l~~lp~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L   79 (325)
                      ++|++|++++| .++.+|. .+..+++|++|++++|.++.+|.. +..+++|++|++++|.+....+.. +..+++|++|
T Consensus        28 ~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~-~~~l~~L~~L  105 (177)
T 2o6r_A           28 SSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGV-FDKLTQLKEL  105 (177)
T ss_dssp             TTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT-TTTCTTCCEE
T ss_pred             CCCcEEEeCCC-cccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHH-hhCCcccCEE
Confidence            57999999999 7888764 578999999999999999888765 588999999999997665444444 7899999999


Q ss_pred             EecccceeeeeeccCccchhhhccCCCcceEEEEecCccc
Q 048462           80 SWFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDA  119 (325)
Q Consensus        80 ~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  119 (325)
                      ++++|.+       .......+..+++|+.|++++|....
T Consensus       106 ~l~~N~l-------~~~~~~~~~~l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A          106 ALDTNQL-------KSVPDGIFDRLTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             ECCSSCC-------SCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             ECcCCcc-------eEeCHHHhcCCcccCEEEecCCCeec
Confidence            9999988       43334446789999999999997653

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.17  E-value=3.2e-11  Score=95.56  Aligned_cols=106  Identities=20%  Similarity=0.249  Sum_probs=90.3

Q ss_pred             CCCcEEecCCCCCCCcCchhhhCcccCceecCCCCcccccChhh-hccccCceeeccCCCCCeeech--hhhhCCCcccE
Q 048462            2 HALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGI-TYLKNLKILRLDGMRYLAFVPC--QVISSLSSLQV   78 (325)
Q Consensus         2 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~l-~~l~~L~~L~l~~~~~~~~~~~--~~~~~l~~L~~   78 (325)
                      ++|++|++++| .++.+ +.++.+++|++|++++|.++.+|..+ ..+++|++|++++|.+ +.+|.  . +..+++|+.
T Consensus        42 ~~L~~L~Ls~N-~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i-~~~~~~~~-l~~l~~L~~  117 (176)
T 1a9n_A           42 DQFDAIDFSDN-EIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSL-VELGDLDP-LASLKSLTY  117 (176)
T ss_dssp             TCCSEEECCSS-CCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCC-CCGGGGGG-GGGCTTCCE
T ss_pred             CCCCEEECCCC-CCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcC-CcchhhHh-hhcCCCCCE
Confidence            48999999999 88887 67899999999999999999888766 8999999999999765 55665  5 889999999


Q ss_pred             EEecccceeeeeeccCccchh----hhccCCCcceEEEEecCccc
Q 048462           79 FSWFSTELVELHYVDSTSVLA----ELESLENIHDISVTLCNVDA  119 (325)
Q Consensus        79 L~l~~~~~~~~~~~~~~~~~~----~l~~l~~L~~L~l~~~~~~~  119 (325)
                      |++++|.+        ...+.    .+..+++|+.|++..+....
T Consensus       118 L~l~~N~i--------~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A          118 LCILRNPV--------TNKKHYRLYVIYKVPQVRVLDFQKVKLKE  154 (176)
T ss_dssp             EECCSSGG--------GGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred             EEecCCCC--------CCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence            99999987        23343    37889999999999987543

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.13  E-value=1.4e-10  Score=91.33  Aligned_cols=104  Identities=23%  Similarity=0.280  Sum_probs=86.2

Q ss_pred             CcEEecCCCCCCCcCchhhhCcccCceecCCCCccccc-ChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEec
Q 048462            4 LAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQL-PTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWF   82 (325)
Q Consensus         4 L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~l-p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~   82 (325)
                      .+.|+++++ .++.+|..+.  .+|++|++++|.++.+ |..+.++++|++|++++|.+. .++...+..+++|++|+++
T Consensus        11 ~~~l~~s~n-~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           11 GTTVDCSGK-SLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             TTEEECTTS-CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred             CCEEEeCCC-CcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcC-ccChhhccCCCCCCEEECC
Confidence            578999999 8999987664  8999999999999877 556889999999999997655 5555437899999999999


Q ss_pred             ccceeeeeeccCccchhhhccCCCcceEEEEecCcc
Q 048462           83 STELVELHYVDSTSVLAELESLENIHDISVTLCNVD  118 (325)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  118 (325)
                      +|.+       .......+..+++|+.|++++|.+.
T Consensus        87 ~N~l-------~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           87 DNQL-------KSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             SSCC-------CCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CCcc-------CEeCHHHhcCCCCCCEEEeCCCCCC
Confidence            9988       4444456888999999999999765

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.13  E-value=1.2e-12  Score=105.99  Aligned_cols=112  Identities=18%  Similarity=0.189  Sum_probs=54.1

Q ss_pred             hhhhCcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEecccceeeeeeccCccchh
Q 048462           20 EAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLA   99 (325)
Q Consensus        20 ~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~   99 (325)
                      ..++.+++|++|++++|.++.+| .+.++++|++|++++|.+. .+|.. +..+++|+.|++++|.+       . .. .
T Consensus        42 ~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~-~l~~~-~~~~~~L~~L~L~~N~l-------~-~l-~  109 (198)
T 1ds9_A           42 ATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIK-KIENL-DAVADTLEELWISYNQI-------A-SL-S  109 (198)
T ss_dssp             HHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEEC-SCSSH-HHHHHHCSEEEEEEEEC-------C-CH-H
T ss_pred             HHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcc-cccch-hhcCCcCCEEECcCCcC-------C-cC-C
Confidence            34555555555555555544444 4445555555555553322 33433 44444555555555444       1 11 1


Q ss_pred             hhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccccccCCCCCeEEEcCCCCc
Q 048462          100 ELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPLDLRMDHLETLEIDRCSLE  166 (325)
Q Consensus       100 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~l~~L~~L~l~~~~~~  166 (325)
                      .+..+++|+.|++++|....++.                       ++.+..+++|++|++++|...
T Consensus       110 ~~~~l~~L~~L~l~~N~i~~~~~-----------------------~~~l~~l~~L~~L~l~~N~l~  153 (198)
T 1ds9_A          110 GIEKLVNLRVLYMSNNKITNWGE-----------------------IDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             HHHHHHHSSEEEESEEECCCHHH-----------------------HHHHTTTTTCSEEEECSCHHH
T ss_pred             ccccCCCCCEEECCCCcCCchhH-----------------------HHHHhcCCCCCEEEecCCccc
Confidence            34444444444444443332211                       112557778888888887653

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.11  E-value=2e-10  Score=90.68  Aligned_cols=105  Identities=20%  Similarity=0.262  Sum_probs=85.4

Q ss_pred             CcEEecCCCCCCCcCchhhhCcccCceecCCCCccccc-ChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEec
Q 048462            4 LAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQL-PTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWF   82 (325)
Q Consensus         4 L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~l-p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~   82 (325)
                      -+.++++++ .++.+|..+.  .+|++|++++|.++.+ |..+.++++|++|++++|.+. .+|...+..+++|+.|+++
T Consensus        14 ~~~l~~~~n-~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~   89 (174)
T 2r9u_A           14 QTLVNCQNI-RLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQLTQLDLN   89 (174)
T ss_dssp             SSEEECCSS-CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred             CcEEEeCCC-CCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCC-ccChhHhCCcchhhEEECC
Confidence            368899999 8899987665  8999999999999877 556889999999999997554 4665436889999999999


Q ss_pred             ccceeeeeeccCccchhhhccCCCcceEEEEecCccc
Q 048462           83 STELVELHYVDSTSVLAELESLENIHDISVTLCNVDA  119 (325)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  119 (325)
                      +|.+       .......+..+++|+.|++.+|.+..
T Consensus        90 ~N~l-------~~l~~~~~~~l~~L~~L~L~~N~~~c  119 (174)
T 2r9u_A           90 DNHL-------KSIPRGAFDNLKSLTHIYLYNNPWDC  119 (174)
T ss_dssp             SSCC-------CCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred             CCcc-------ceeCHHHhccccCCCEEEeCCCCccc
Confidence            9988       33333458889999999999987653

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.10  E-value=1.2e-10  Score=112.33  Aligned_cols=91  Identities=25%  Similarity=0.187  Sum_probs=62.1

Q ss_pred             chhhhCcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEecccceeeeeeccCccch
Q 048462           19 PEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVL   98 (325)
Q Consensus        19 p~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~   98 (325)
                      |..+..+.+|++|++++|.+..+|..+.++++|++|++++|.+. .+|.. +.++++|+.|++++|.+       . .++
T Consensus       217 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~-~~~l~~L~~L~Ls~N~l-------~-~lp  286 (727)
T 4b8c_D          217 KDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAE-IKNLSNLRVLDLSHNRL-------T-SLP  286 (727)
T ss_dssp             -----CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS-CCCGG-GGGGTTCCEEECTTSCC-------S-SCC
T ss_pred             hhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc-ccChh-hhCCCCCCEEeCcCCcC-------C-ccC
Confidence            55566777777777777777777777777777777777776554 66766 77777777777777776       3 556


Q ss_pred             hhhccCCCcceEEEEecCccc
Q 048462           99 AELESLENIHDISVTLCNVDA  119 (325)
Q Consensus        99 ~~l~~l~~L~~L~l~~~~~~~  119 (325)
                      ..+..+++|+.|++++|.+..
T Consensus       287 ~~~~~l~~L~~L~L~~N~l~~  307 (727)
T 4b8c_D          287 AELGSCFQLKYFYFFDNMVTT  307 (727)
T ss_dssp             SSGGGGTTCSEEECCSSCCCC
T ss_pred             hhhcCCCCCCEEECCCCCCCc
Confidence            667777777777777775543

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.03  E-value=2.1e-11  Score=98.48  Aligned_cols=107  Identities=19%  Similarity=0.250  Sum_probs=92.0

Q ss_pred             CCCCcEEecCCCCCCCcCchhhhCcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEE
Q 048462            1 MHALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFS   80 (325)
Q Consensus         1 ~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~   80 (325)
                      +++|++|++++| .++.+| .+..+++|++|++++|.++.+|..+..+++|++|++++|.+.. +| . +..+++|++|+
T Consensus        47 l~~L~~L~ls~n-~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~-l~-~-~~~l~~L~~L~  121 (198)
T 1ds9_A           47 LKACKHLALSTN-NIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIAS-LS-G-IEKLVNLRVLY  121 (198)
T ss_dssp             TTTCSEEECSEE-EESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCC-HH-H-HHHHHHSSEEE
T ss_pred             CCCCCEEECCCC-CCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCc-CC-c-cccCCCCCEEE
Confidence            578999999999 888888 8999999999999999999999988889999999999976544 66 4 88999999999


Q ss_pred             ecccceeeeeeccCc-cchhhhccCCCcceEEEEecCccc
Q 048462           81 WFSTELVELHYVDST-SVLAELESLENIHDISVTLCNVDA  119 (325)
Q Consensus        81 l~~~~~~~~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~  119 (325)
                      +++|.+       .. .....+..+++|+.|++.+|....
T Consensus       122 l~~N~i-------~~~~~~~~l~~l~~L~~L~l~~N~l~~  154 (198)
T 1ds9_A          122 MSNNKI-------TNWGEIDKLAALDKLEDLLLAGNPLYN  154 (198)
T ss_dssp             ESEEEC-------CCHHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred             CCCCcC-------CchhHHHHHhcCCCCCEEEecCCcccc
Confidence            999987       22 123578899999999999987654

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.95  E-value=2.1e-09  Score=84.82  Aligned_cols=83  Identities=25%  Similarity=0.377  Sum_probs=72.6

Q ss_pred             CCCcEEecCCCCCCCcC-chhhhCcccCceecCCCCcccccChh-hhccccCceeeccCCCCCeeechhhhhCCCcccEE
Q 048462            2 HALAVLDLSYNLDLVKL-PEAIGKLINLCYLNLSNTRIGQLPTG-ITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVF   79 (325)
Q Consensus         2 ~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~l~~~~l~~lp~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L   79 (325)
                      ++|++|++++| .++.+ |..+..+++|++|++++|+++.+|.. +.++++|++|++++|.+. .+|...+..+++|++|
T Consensus        33 ~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L  110 (174)
T 2r9u_A           33 TDKQRLWLNNN-QITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLK-SIPRGAFDNLKSLTHI  110 (174)
T ss_dssp             TTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEE
T ss_pred             CCCcEEEeCCC-CccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccc-eeCHHHhccccCCCEE
Confidence            57999999999 78887 67799999999999999999989886 478999999999997665 4554438899999999


Q ss_pred             Eecccce
Q 048462           80 SWFSTEL   86 (325)
Q Consensus        80 ~l~~~~~   86 (325)
                      ++.+|.+
T Consensus       111 ~L~~N~~  117 (174)
T 2r9u_A          111 YLYNNPW  117 (174)
T ss_dssp             ECCSSCB
T ss_pred             EeCCCCc
Confidence            9999987

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.93  E-value=2.6e-09  Score=83.94  Aligned_cols=83  Identities=28%  Similarity=0.408  Sum_probs=72.3

Q ss_pred             CCCcEEecCCCCCCCcC-chhhhCcccCceecCCCCcccccChh-hhccccCceeeccCCCCCeeechhhhhCCCcccEE
Q 048462            2 HALAVLDLSYNLDLVKL-PEAIGKLINLCYLNLSNTRIGQLPTG-ITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVF   79 (325)
Q Consensus         2 ~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~l~~~~l~~lp~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L   79 (325)
                      ++|++|++++| .++.+ |..+..+++|++|++++|.++.+|.. +.++++|++|++++|.+.. ++...+..+++|++|
T Consensus        30 ~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L  107 (170)
T 3g39_A           30 TTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS-IPRGAFDNLKSLTHI  107 (170)
T ss_dssp             TTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEE
T ss_pred             CCCcEEEcCCC-cCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCE-eCHHHhcCCCCCCEE
Confidence            57999999999 88888 67799999999999999999988876 4899999999999976654 554338899999999


Q ss_pred             Eecccce
Q 048462           80 SWFSTEL   86 (325)
Q Consensus        80 ~l~~~~~   86 (325)
                      ++++|.+
T Consensus       108 ~L~~N~~  114 (170)
T 3g39_A          108 WLLNNPW  114 (170)
T ss_dssp             ECCSSCB
T ss_pred             EeCCCCC
Confidence            9999987

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.89  E-value=1.6e-07  Score=84.13  Aligned_cols=256  Identities=9%  Similarity=0.074  Sum_probs=148.2

Q ss_pred             CCcEEecCCCCCCCcCc-hhhhCcccCceecCCCCcccccChh-hhccccCceeeccCCCCCeeechhhhhCCCcccEEE
Q 048462            3 ALAVLDLSYNLDLVKLP-EAIGKLINLCYLNLSNTRIGQLPTG-ITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFS   80 (325)
Q Consensus         3 ~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~l~~lp~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~   80 (325)
                      .++.+.+-+.  ++.++ .+|.++ +|+.+.+..+ ++.++.. +.+ .+|+.+.+..  .+..++..++.+|++|+.++
T Consensus       114 ~l~~i~ip~~--i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~--~l~~I~~~aF~~c~~L~~l~  186 (401)
T 4fdw_A          114 GYNEIILPNS--VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS--TLEQLKEDIFYYCYNLKKAD  186 (401)
T ss_dssp             SCSEEECCTT--CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT--TCCEECSSTTTTCTTCCEEE
T ss_pred             CccEEEECCc--cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC--CccEehHHHhhCcccCCeee
Confidence            4455555543  55553 446665 6888888765 5555443 344 3688888876  34455544488888888888


Q ss_pred             ecccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEc-eeeeecccccccCCCCCeEE
Q 048462           81 WFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVV-LMASFLLPLDLRMDHLETLE  159 (325)
Q Consensus        81 l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~-~~~~~~l~~l~~l~~L~~L~  159 (325)
                      +..+.+       .......+. +.+|+.+.+..+ ...+...  +..-+.+|+.+.+. +...+.-.++.. .+|+.+.
T Consensus       187 l~~n~l-------~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~--aF~~~~~L~~l~l~~~l~~I~~~aF~~-~~L~~i~  254 (401)
T 4fdw_A          187 LSKTKI-------TKLPASTFV-YAGIEEVLLPVT-LKEIGSQ--AFLKTSQLKTIEIPENVSTIGQEAFRE-SGITTVK  254 (401)
T ss_dssp             CTTSCC-------SEECTTTTT-TCCCSEEECCTT-CCEECTT--TTTTCTTCCCEECCTTCCEECTTTTTT-CCCSEEE
T ss_pred             cCCCcc-------eEechhhEe-ecccCEEEeCCc-hheehhh--HhhCCCCCCEEecCCCccCcccccccc-CCccEEE
Confidence            887765       222222233 577888877533 3222221  22233457777776 333333333555 6788888


Q ss_pred             EcCCCCceeccccCCCCCccccccccccEEEecCCCCCC-----cc--ccccCCCCccEEEEeccCCchhhcccCCCCCC
Q 048462          160 IDRCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMT-----DL--KWIRYAPNLQFLYVSYCPRLSEIIGTYESPGT  232 (325)
Q Consensus       160 l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-----~l--~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~  232 (325)
                      +..+-. .+.     ...+  ..+++|+.+++.++ ...     .+  ..+..+++|+.+.+.+.  ++.+..       
T Consensus       255 lp~~i~-~I~-----~~aF--~~c~~L~~l~l~~~-~~~~~~~~~I~~~aF~~c~~L~~l~l~~~--i~~I~~-------  316 (401)
T 4fdw_A          255 LPNGVT-NIA-----SRAF--YYCPELAEVTTYGS-TFNDDPEAMIHPYCLEGCPKLARFEIPES--IRILGQ-------  316 (401)
T ss_dssp             EETTCC-EEC-----TTTT--TTCTTCCEEEEESS-CCCCCTTCEECTTTTTTCTTCCEECCCTT--CCEECT-------
T ss_pred             eCCCcc-EEC-----hhHh--hCCCCCCEEEeCCc-cccCCcccEECHHHhhCCccCCeEEeCCc--eEEEhh-------
Confidence            854321 111     1112  45788888888775 222     23  24556888888888743  555543       


Q ss_pred             CccccccccCCcccEEeccCCCCcceeccCcc-cCCCccEEeeeCCCCCCCCCCCCCC-cccceeEEechHHH
Q 048462          233 SEIEESQDFFSNLMVIDLRHLPSLTSICCGVV-PFPSLQTISVNGCPSLRKLPLNSGS-AKNSLNAIRGSREW  303 (325)
Q Consensus       233 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~-~~~~L~~L~l~~c~~l~~ip~~~~~-~~~~l~~~~~~~~~  303 (325)
                          ..+..+.+|+.+.+..  .++.+..... .+ +|+.+.+.++ .+..++..... ....+..++.....
T Consensus       317 ----~aF~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~n-~~~~l~~~~F~~~~~~l~~l~vp~~~  381 (401)
T 4fdw_A          317 ----GLLGGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEGT-TPPQVFEKVWYGFPDDITVIRVPAES  381 (401)
T ss_dssp             ----TTTTTCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECCS-SCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred             ----hhhcCCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcCC-CCcccccccccCCCCCccEEEeCHHH
Confidence                3666788899998864  4666655433 35 8999999876 55555544322 22344555554443

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.88  E-value=4.4e-07  Score=81.20  Aligned_cols=215  Identities=11%  Similarity=0.041  Sum_probs=119.2

Q ss_pred             CCcEEecCCCCCCCcCc-hhhhCcccCceecCCCCcccccCh-hhhccccCceeeccCCCCCeeechhhhhCCCcccEEE
Q 048462            3 ALAVLDLSYNLDLVKLP-EAIGKLINLCYLNLSNTRIGQLPT-GITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFS   80 (325)
Q Consensus         3 ~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~   80 (325)
                      +|+.+++..+  ++.++ .+|.++ +|+.+.+.. .++.++. .+.+|.+|+.+++.++ ....++..++. +.+|+.+.
T Consensus       136 ~L~~i~l~~~--i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n-~l~~I~~~aF~-~~~L~~l~  209 (401)
T 4fdw_A          136 QIAKVVLNEG--LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKT-KITKLPASTFV-YAGIEEVL  209 (401)
T ss_dssp             CCSEEECCTT--CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTS-CCSEECTTTTT-TCCCSEEE
T ss_pred             CccEEEeCCC--ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCC-cceEechhhEe-ecccCEEE
Confidence            4666666554  55553 345554 577777765 4554443 3567777888887763 44555655344 57777777


Q ss_pred             ecccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEce-eeeecccccccCCCCCeEE
Q 048462           81 WFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVL-MASFLLPLDLRMDHLETLE  159 (325)
Q Consensus        81 l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~l~~l~~l~~L~~L~  159 (325)
                      +..+ +       .......+..+++|+.+.+..+ ...+.......   ..|+.+.+.+ ...+.-.++..+++|+.+.
T Consensus       210 lp~~-l-------~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~---~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~  277 (401)
T 4fdw_A          210 LPVT-L-------KEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE---SGITTVKLPNGVTNIASRAFYYCPELAEVT  277 (401)
T ss_dssp             CCTT-C-------CEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT---CCCSEEEEETTCCEECTTTTTTCTTCCEEE
T ss_pred             eCCc-h-------heehhhHhhCCCCCCEEecCCC-ccCcccccccc---CCccEEEeCCCccEEChhHhhCCCCCCEEE
Confidence            7654 2       2333445667777777777543 22222211111   2467777752 3333334477777888887


Q ss_pred             EcCCCCceeccccCCCCCccccccccccEEEecCCCCCCccc--cccCCCCccEEEEeccCCchhhcccCCCCCCCcccc
Q 048462          160 IDRCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDLK--WIRYAPNLQFLYVSYCPRLSEIIGTYESPGTSEIEE  237 (325)
Q Consensus       160 l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~--~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~  237 (325)
                      +.++..........+...+  ..+++|+.+.+.+  .++.+.  .+..+++|+.+.+..+  ++.+..           .
T Consensus       278 l~~~~~~~~~~~~I~~~aF--~~c~~L~~l~l~~--~i~~I~~~aF~~c~~L~~l~lp~~--l~~I~~-----------~  340 (401)
T 4fdw_A          278 TYGSTFNDDPEAMIHPYCL--EGCPKLARFEIPE--SIRILGQGLLGGNRKVTQLTIPAN--VTQINF-----------S  340 (401)
T ss_dssp             EESSCCCCCTTCEECTTTT--TTCTTCCEECCCT--TCCEECTTTTTTCCSCCEEEECTT--CCEECT-----------T
T ss_pred             eCCccccCCcccEECHHHh--hCCccCCeEEeCC--ceEEEhhhhhcCCCCccEEEECcc--ccEEcH-----------H
Confidence            7765532000000001111  3566777777764  355543  4555677777777544  444433           2


Q ss_pred             ccccCCcccEEeccCC
Q 048462          238 SQDFFSNLMVIDLRHL  253 (325)
Q Consensus       238 ~~~~~~~L~~L~l~~~  253 (325)
                      .+..+ +|+.+.+.++
T Consensus       341 aF~~~-~L~~l~l~~n  355 (401)
T 4fdw_A          341 AFNNT-GIKEVKVEGT  355 (401)
T ss_dssp             SSSSS-CCCEEEECCS
T ss_pred             hCCCC-CCCEEEEcCC
Confidence            45566 7777777765

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.83  E-value=7.6e-09  Score=90.88  Aligned_cols=103  Identities=15%  Similarity=0.118  Sum_probs=81.7

Q ss_pred             EEecCCCCCCCcCchhhhCcccCceecCCC-CcccccCh-hhhccccCceeeccCCCCCeeechhhhhCCCcccEEEecc
Q 048462            6 VLDLSYNLDLVKLPEAIGKLINLCYLNLSN-TRIGQLPT-GITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWFS   83 (325)
Q Consensus         6 ~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~-~~l~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~   83 (325)
                      .++.+++..++.+|. +..+.+|++|+|++ |.++.+|. .+.++++|++|++++|.+.+..|.. +.++++|++|++++
T Consensus        12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~-~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDA-FHFTPRLSRLNLSF   89 (347)
T ss_dssp             CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTG-GGSCSCCCEEECCS
T ss_pred             EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHH-hcCCcCCCEEeCCC
Confidence            457776646888998 99999999999996 89988874 5889999999999998766655555 89999999999999


Q ss_pred             cceeeeeeccCccchhhhccCCCcceEEEEecCcc
Q 048462           84 TELVELHYVDSTSVLAELESLENIHDISVTLCNVD  118 (325)
Q Consensus        84 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  118 (325)
                      |.+       .......+..++ |+.|++.+|.+.
T Consensus        90 N~l-------~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           90 NAL-------ESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             SCC-------SCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             Ccc-------ceeCHHHcccCC-ceEEEeeCCCcc
Confidence            998       332233344444 999999988765

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.81  E-value=8.9e-10  Score=97.76  Aligned_cols=163  Identities=12%  Similarity=0.068  Sum_probs=92.5

Q ss_pred             CCCcEEecCCCCCCCcC-chhhhC-----cccCceecCCCCccc--ccChhhhccccCceeeccCCCCCeeechh---hh
Q 048462            2 HALAVLDLSYNLDLVKL-PEAIGK-----LINLCYLNLSNTRIG--QLPTGITYLKNLKILRLDGMRYLAFVPCQ---VI   70 (325)
Q Consensus         2 ~~L~~L~l~~~~~~~~l-p~~~~~-----l~~L~~L~l~~~~l~--~lp~~l~~l~~L~~L~l~~~~~~~~~~~~---~~   70 (325)
                      ++|+.|++++| .++.. ...+..     .++|++|++++|.++  .+......+++|++|++++|.+...-...   .+
T Consensus        72 ~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           72 SSLRQLNLAGV-RMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             TTCCEEECTTS-CCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             hhCCEEEecCC-CCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            46778888888 56532 222332     257888888888764  22222344667788888886554322211   02


Q ss_pred             -hCCCcccEEEecccceeeeeeccCc----cchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeec
Q 048462           71 -SSLSSLQVFSWFSTELVELHYVDST----SVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFL  145 (325)
Q Consensus        71 -~~l~~L~~L~l~~~~~~~~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  145 (325)
                       ...++|++|++++|.+       ..    .+...+..+++|++|++++|.+......                     .
T Consensus       151 ~~~~~~L~~L~Ls~n~l-------~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~---------------------~  202 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPL-------TAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLE---------------------L  202 (372)
T ss_dssp             HSTTCCCCEEECCSSCC-------HHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHH---------------------H
T ss_pred             HhcCCccceeeCCCCCC-------ChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHH---------------------H
Confidence             2456788888888776       22    2333445677777777777764431100                     1


Q ss_pred             ccc-cccCCCCCeEEEcCCCCceeccccCCCCCccc--cccccccEEEecCCCCCCc
Q 048462          146 LPL-DLRMDHLETLEIDRCSLESKNDYFGDQGRTRT--YCFRNLRHLSVKTCPCMTD  199 (325)
Q Consensus       146 l~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~l~~  199 (325)
                      +.. +...++|++|++++|...+...     ..+..  ...++|++|++++| .+++
T Consensus       203 L~~~L~~~~~L~~L~Ls~N~i~~~g~-----~~l~~~L~~~~~L~~L~Ls~N-~i~~  253 (372)
T 3un9_A          203 LAAQLDRNRQLQELNVAYNGAGDTAA-----LALARAAREHPSLELLHLYFN-ELSS  253 (372)
T ss_dssp             HHHHGGGCSCCCEEECCSSCCCHHHH-----HHHHHHHHHCSSCCEEECTTS-SCCH
T ss_pred             HHHHHhcCCCcCeEECCCCCCCHHHH-----HHHHHHHHhCCCCCEEeccCC-CCCH
Confidence            111 4456678888888877542111     01111  24577888888888 5665

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.71  E-value=8.6e-09  Score=80.50  Aligned_cols=85  Identities=8%  Similarity=0.210  Sum_probs=39.7

Q ss_pred             cccEEEecCCCCCCc--cccccCCCCccEEEEeccCCchhhcccCCCCCCCcccccccc----CCcccEEeccCCCCcce
Q 048462          185 NLRHLSVKTCPCMTD--LKWIRYAPNLQFLYVSYCPRLSEIIGTYESPGTSEIEESQDF----FSNLMVIDLRHLPSLTS  258 (325)
Q Consensus       185 ~L~~L~l~~~~~l~~--l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~----~~~L~~L~l~~~~~l~~  258 (325)
                      +|++|++++| .+++  +..+..+++|++|+|++|..+++...           ..+..    +++|++|++++|+.+++
T Consensus        62 ~L~~LDLs~~-~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL-----------~~L~~~~~~~~~L~~L~Ls~C~~ITD  129 (176)
T 3e4g_A           62 KIQAIDATDS-CIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCL-----------ERLSQLENLQKSMLEMEIISCGNVTD  129 (176)
T ss_dssp             CEEEEEEESC-CCCGGGGGGGTTCSCCCEEEEESCTTCCHHHH-----------HHHHTCHHHHHHCCEEEEESCTTCCH
T ss_pred             eEeEEeCcCC-CccHHHHHHhcCCCCCCEEEeCCCCccCHHHH-----------HHHHhcccccCCCCEEEcCCCCcCCH
Confidence            3555555555 2444  23344455555555555555544432           12222    23455555555555443


Q ss_pred             ecc-CcccCCCccEEeeeCCCCCC
Q 048462          259 ICC-GVVPFPSLQTISVNGCPSLR  281 (325)
Q Consensus       259 ~~~-~~~~~~~L~~L~l~~c~~l~  281 (325)
                      --. ....+++|++|++++|+.++
T Consensus       130 ~Gl~~L~~~~~L~~L~L~~c~~It  153 (176)
T 3e4g_A          130 KGIIALHHFRNLKYLFLSDLPGVK  153 (176)
T ss_dssp             HHHHHGGGCTTCCEEEEESCTTCC
T ss_pred             HHHHHHhcCCCCCEEECCCCCCCC
Confidence            111 01235555555555555555

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.68  E-value=2.6e-08  Score=87.80  Aligned_cols=15  Identities=13%  Similarity=0.177  Sum_probs=7.8

Q ss_pred             hhCCCcccEEEeccc
Q 048462           70 ISSLSSLQVFSWFST   84 (325)
Q Consensus        70 ~~~l~~L~~L~l~~~   84 (325)
                      +..+++|+.|++.++
T Consensus       168 l~~~P~L~~L~L~g~  182 (362)
T 2ra8_A          168 LDAMPLLNNLKIKGT  182 (362)
T ss_dssp             HHTCTTCCEEEEECC
T ss_pred             HhcCCCCcEEEEeCC
Confidence            444555555555544

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.62  E-value=2.2e-08  Score=78.22  Aligned_cols=66  Identities=15%  Similarity=0.274  Sum_probs=36.2

Q ss_pred             ccccccEEEecCCCCCCc--cccccC----CCCccEEEEeccCCchhhcccCCCCCCCccccccccCCcccEEeccCCCC
Q 048462          182 CFRNLRHLSVKTCPCMTD--LKWIRY----APNLQFLYVSYCPRLSEIIGTYESPGTSEIEESQDFFSNLMVIDLRHLPS  255 (325)
Q Consensus       182 ~~~~L~~L~l~~~~~l~~--l~~~~~----~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  255 (325)
                      .+++|++|+|++|..+++  +..+..    +++|++|+|++|+.+++...           ..+..+++|++|++++|+.
T Consensus        83 ~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl-----------~~L~~~~~L~~L~L~~c~~  151 (176)
T 3e4g_A           83 GLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI-----------IALHHFRNLKYLFLSDLPG  151 (176)
T ss_dssp             TCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH-----------HHGGGCTTCCEEEEESCTT
T ss_pred             CCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH-----------HHHhcCCCCCEEECCCCCC
Confidence            456666666666655555  222332    23566666666665555433           2344566666666666665


Q ss_pred             cce
Q 048462          256 LTS  258 (325)
Q Consensus       256 l~~  258 (325)
                      +++
T Consensus       152 Itd  154 (176)
T 3e4g_A          152 VKE  154 (176)
T ss_dssp             CCC
T ss_pred             CCc
Confidence            554

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.59  E-value=3.8e-09  Score=93.71  Aligned_cols=82  Identities=17%  Similarity=0.052  Sum_probs=53.7

Q ss_pred             CceEEEEceeeee-----cccc-cccCCCCCeEEEcCCCCceeccccCCCCCccc--cccccccEEEecCCCCCCccc--
Q 048462          132 CIKRLAVVLMASF-----LLPL-DLRMDHLETLEIDRCSLESKNDYFGDQGRTRT--YCFRNLRHLSVKTCPCMTDLK--  201 (325)
Q Consensus       132 ~L~~L~l~~~~~~-----~l~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~l~~l~--  201 (325)
                      .|++|+++++...     .++. +..+++|++|++++|...+...     ..+..  ...++|++|++++| .+++..  
T Consensus       156 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~-----~~L~~~L~~~~~L~~L~Ls~N-~i~~~g~~  229 (372)
T 3un9_A          156 QITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGL-----ELLAAQLDRNRQLQELNVAYN-GAGDTAAL  229 (372)
T ss_dssp             CCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHH-----HHHHHHGGGCSCCCEEECCSS-CCCHHHHH
T ss_pred             ccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHH-----HHHHHHHhcCCCcCeEECCCC-CCCHHHHH
Confidence            3566666644321     1222 4678899999999998653221     01111  34578999999999 787632  


Q ss_pred             ----cccCCCCccEEEEeccCC
Q 048462          202 ----WIRYAPNLQFLYVSYCPR  219 (325)
Q Consensus       202 ----~~~~~~~L~~L~l~~~~~  219 (325)
                          .+...++|++|++++|..
T Consensus       230 ~l~~~L~~~~~L~~L~Ls~N~i  251 (372)
T 3un9_A          230 ALARAAREHPSLELLHLYFNEL  251 (372)
T ss_dssp             HHHHHHHHCSSCCEEECTTSSC
T ss_pred             HHHHHHHhCCCCCEEeccCCCC
Confidence                244579999999999974

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.49  E-value=2.3e-07  Score=81.34  Aligned_cols=82  Identities=18%  Similarity=0.184  Sum_probs=68.5

Q ss_pred             CCCcEEecCC-CCCCCcCc-hhhhCcccCceecCCCCcccccCh-hhhccccCceeeccCCCCCeeechhhhhCCCcccE
Q 048462            2 HALAVLDLSY-NLDLVKLP-EAIGKLINLCYLNLSNTRIGQLPT-GITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQV   78 (325)
Q Consensus         2 ~~L~~L~l~~-~~~~~~lp-~~~~~l~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~   78 (325)
                      ++|++|+|++ | .++.+| ..+..+.+|++|+|++|.+..++. .+.++++|++|++++|.+. .+|...+..++ |+.
T Consensus        31 ~~L~~L~l~~~n-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~~~-L~~  107 (347)
T 2ifg_A           31 ENLTELYIENQQ-HLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLS-LQE  107 (347)
T ss_dssp             SCCSEEECCSCS-SCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS-CCCSTTTCSCC-CCE
T ss_pred             CCeeEEEccCCC-CCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccc-eeCHHHcccCC-ceE
Confidence            5799999997 7 888886 679999999999999999987765 5789999999999997655 56654255555 999


Q ss_pred             EEecccce
Q 048462           79 FSWFSTEL   86 (325)
Q Consensus        79 L~l~~~~~   86 (325)
                      |++.+|.+
T Consensus       108 l~l~~N~~  115 (347)
T 2ifg_A          108 LVLSGNPL  115 (347)
T ss_dssp             EECCSSCC
T ss_pred             EEeeCCCc
Confidence            99999987

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.49  E-value=9.7e-08  Score=84.09  Aligned_cols=63  Identities=19%  Similarity=0.203  Sum_probs=31.2

Q ss_pred             CCCCccEEEEeccCCchhhcccCCCCCCCccccccccCCcccEEeccCCCCcce-----eccCcccCCCccEEeeeCC
Q 048462          205 YAPNLQFLYVSYCPRLSEIIGTYESPGTSEIEESQDFFSNLMVIDLRHLPSLTS-----ICCGVVPFPSLQTISVNGC  277 (325)
Q Consensus       205 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-----~~~~~~~~~~L~~L~l~~c  277 (325)
                      .+|+|++|++.+|........         .......+++|++|+++.+ .+.+     +......+++|++|++++|
T Consensus       250 ~~p~Lr~L~L~~~~i~~~~~~---------~la~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n  317 (362)
T 2ra8_A          250 RFPNLKWLGIVDAEEQNVVVE---------MFLESDILPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKYN  317 (362)
T ss_dssp             TCTTCCEEEEESCTTHHHHHH---------HHHHCSSGGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred             CCCCcCEEeCCCCCCchHHHH---------HHHhCccCCCCCEEECCCC-CCChHHHHHHHhhcccCCcceEEECCCC
Confidence            356666666666654322211         0001134566777776654 3333     2222234566777777665

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.32  E-value=6.1e-05  Score=67.10  Aligned_cols=53  Identities=11%  Similarity=0.149  Sum_probs=26.9

Q ss_pred             CCCCcEEecCCCCCCCcCc-hhhhCcccCceecCCCCcccccCh-hhhccccCceeec
Q 048462            1 MHALAVLDLSYNLDLVKLP-EAIGKLINLCYLNLSNTRIGQLPT-GITYLKNLKILRL   56 (325)
Q Consensus         1 ~~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~l   56 (325)
                      |.+|+.+.+..+  ++.+. .+|.+|.+|+.+++..+ ++.++. .+..+.+|+.+.+
T Consensus        70 c~~L~~i~lp~~--i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~  124 (394)
T 4fs7_A           70 CRKVTEIKIPST--VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILL  124 (394)
T ss_dssp             CTTEEEEECCTT--CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCC
T ss_pred             CCCceEEEeCCC--ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcc
Confidence            345666666533  45553 44666777777766543 333322 2344555554443

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.31  E-value=4.8e-07  Score=71.91  Aligned_cols=64  Identities=16%  Similarity=0.080  Sum_probs=30.1

Q ss_pred             hhCcccCceecCCCC-ccc-----ccChhhhccccCceeeccCCCCCe----eechhhhhCCCcccEEEecccce
Q 048462           22 IGKLINLCYLNLSNT-RIG-----QLPTGITYLKNLKILRLDGMRYLA----FVPCQVISSLSSLQVFSWFSTEL   86 (325)
Q Consensus        22 ~~~l~~L~~L~l~~~-~l~-----~lp~~l~~l~~L~~L~l~~~~~~~----~~~~~~~~~l~~L~~L~l~~~~~   86 (325)
                      +...++|++|++++| .++     .+...+...++|++|++++|.+..    .+... +...++|++|++++|.+
T Consensus        32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~-L~~n~~L~~L~L~~N~i  105 (185)
T 1io0_A           32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEM-LKVNNTLKSLNVESNFI  105 (185)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHH-HHHCSSCCEEECCSSCC
T ss_pred             HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHH-HHhCCCcCEEECcCCcC
Confidence            344555555555555 442     233334445555555555544332    11222 33445555555555554

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.13  E-value=4e-06  Score=70.24  Aligned_cols=79  Identities=23%  Similarity=0.273  Sum_probs=52.7

Q ss_pred             hCcccCceecCCCCcccc---cChhhhccccCceeeccCCCCCeeechhhhhCCC--cccEEEecccceeeeeeccCccc
Q 048462           23 GKLINLCYLNLSNTRIGQ---LPTGITYLKNLKILRLDGMRYLAFVPCQVISSLS--SLQVFSWFSTELVELHYVDSTSV   97 (325)
Q Consensus        23 ~~l~~L~~L~l~~~~l~~---lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~--~L~~L~l~~~~~~~~~~~~~~~~   97 (325)
                      .++++|++|++++|.+..   +|..+..+++|+.|++++|.+... . . +..+.  +|++|++.+|.+       ...+
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~-~-l~~l~~l~L~~L~L~~Npl-------~~~~  236 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-R-E-LDKIKGLKLEELWLDGNSL-------CDTF  236 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-G-G-GGGGTTSCCSEEECTTSTT-------GGGC
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-h-h-hhhcccCCcceEEccCCcC-------cccc
Confidence            357788888888887754   445667888888888888665543 2 1 33333  888888888876       2211


Q ss_pred             -------hhhhccCCCcceEE
Q 048462           98 -------LAELESLENIHDIS  111 (325)
Q Consensus        98 -------~~~l~~l~~L~~L~  111 (325)
                             ...+..+++|+.|+
T Consensus       237 ~~~~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          237 RDQSTYISAIRERFPKLLRLD  257 (267)
T ss_dssp             SSHHHHHHHHHHHCTTCCEES
T ss_pred             CcchhHHHHHHHHCcccCeEC
Confidence                   13456677777764

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.07  E-value=0.00014  Score=64.73  Aligned_cols=214  Identities=14%  Similarity=0.080  Sum_probs=124.2

Q ss_pred             hhhhCcccCceecCCCCcccccCh-hhhccccCceeeccCCCCCeeechhhhhCCCcccEEEecccceeeeeeccCccch
Q 048462           20 EAIGKLINLCYLNLSNTRIGQLPT-GITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVL   98 (325)
Q Consensus        20 ~~~~~l~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~   98 (325)
                      .++.+|.+|+.+.+..+ +..++. .+.++.+|+.+++..+  ...++...+.++..|+.+.+..+..         ...
T Consensus       156 ~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i~~~~~~~---------~i~  223 (394)
T 4fs7_A          156 EAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECILLENMEFPNSLY---------YLG  223 (394)
T ss_dssp             TTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCBCCCCTTCC---------EEC
T ss_pred             hhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC--ceEeCchhhccccccceeecCCCce---------Eee
Confidence            45888999999999765 333433 3677899999998774  4455544488888898888776543         111


Q ss_pred             hhhccCCCcceEEEEecCcccccccccCccccCCceEEEEce-eeeecccccccCCCCCeEEEcCCCCceeccccCCCCC
Q 048462           99 AELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVL-MASFLLPLDLRMDHLETLEIDRCSLESKNDYFGDQGR  177 (325)
Q Consensus        99 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~  177 (325)
                      ........|+.+.+.... ..+..  .+...+..++.+.+.. ........+..+..++.+........        ...
T Consensus       224 ~~~~~~~~l~~i~ip~~~-~~i~~--~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~--------~~~  292 (394)
T 4fs7_A          224 DFALSKTGVKNIIIPDSF-TELGK--SVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVP--------EKT  292 (394)
T ss_dssp             TTTTTTCCCCEEEECTTC-CEECS--STTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEEC--------TTT
T ss_pred             hhhcccCCCceEEECCCc-eeccc--ccccccccceeEEcCCCcceeeccccccccccceeccCceeec--------ccc
Confidence            222344667777764321 11111  1122234466666653 22223333667777777766543211        111


Q ss_pred             ccccccccccEEEecCCCCCCccc--cccCCCCccEEEEeccCCchhhcccCCCCCCCccccccccCCcccEEeccCCCC
Q 048462          178 TRTYCFRNLRHLSVKTCPCMTDLK--WIRYAPNLQFLYVSYCPRLSEIIGTYESPGTSEIEESQDFFSNLMVIDLRHLPS  255 (325)
Q Consensus       178 ~~~~~~~~L~~L~l~~~~~l~~l~--~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  255 (325)
                      +  ..+.+|+.+.+.+.  ++.+.  .+..+.+|+.+++...  ++.+..           ..+..+.+|+.+.+..  .
T Consensus       293 F--~~~~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~-----------~aF~~c~~L~~i~lp~--~  353 (394)
T 4fs7_A          293 F--YGCSSLTEVKLLDS--VKFIGEEAFESCTSLVSIDLPYL--VEEIGK-----------RSFRGCTSLSNINFPL--S  353 (394)
T ss_dssp             T--TTCTTCCEEEECTT--CCEECTTTTTTCTTCCEECCCTT--CCEECT-----------TTTTTCTTCCEECCCT--T
T ss_pred             c--cccccccccccccc--cceechhhhcCCCCCCEEEeCCc--ccEEhH-----------HhccCCCCCCEEEECc--c
Confidence            1  34677888877653  44443  3456778888877543  444433           3556778888887764  3


Q ss_pred             cceeccCc-ccCCCccEEeee
Q 048462          256 LTSICCGV-VPFPSLQTISVN  275 (325)
Q Consensus       256 l~~~~~~~-~~~~~L~~L~l~  275 (325)
                      ++.+.... ..|++|+.+++.
T Consensus       354 l~~I~~~aF~~C~~L~~i~lp  374 (394)
T 4fs7_A          354 LRKIGANAFQGCINLKKVELP  374 (394)
T ss_dssp             CCEECTTTBTTCTTCCEEEEE
T ss_pred             ccEehHHHhhCCCCCCEEEEC
Confidence            55554432 236777777774

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.98  E-value=0.001  Score=59.08  Aligned_cols=142  Identities=8%  Similarity=0.087  Sum_probs=71.1

Q ss_pred             CcEEecCCCCCCCcC-chhhhCcccCceecCCCC---cccccCh-hhhccccCceeeccCCCCCeeechhhhhCCCcccE
Q 048462            4 LAVLDLSYNLDLVKL-PEAIGKLINLCYLNLSNT---RIGQLPT-GITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQV   78 (325)
Q Consensus         4 L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~l~~~---~l~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~   78 (325)
                      |+.+.+-..  ++.+ ..+|.+|.+|+.+.+..+   .++.+.. ++..+.+|+.+.+..+  ...++..++..+.+|+.
T Consensus        66 L~sI~iP~s--vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~--~~~I~~~aF~~c~~L~~  141 (394)
T 4gt6_A           66 LTSVQIPDT--VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS--VTEIDSEAFHHCEELDT  141 (394)
T ss_dssp             CCEEEECTT--CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT--CSEECTTTTTTCTTCCE
T ss_pred             CEEEEECCC--eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc--cceehhhhhhhhccccc
Confidence            555555433  4444 345667777877777654   2444433 3556777777766542  33444443677777777


Q ss_pred             EEecccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEc-eeeeecccccccCCCCCe
Q 048462           79 FSWFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVV-LMASFLLPLDLRMDHLET  157 (325)
Q Consensus        79 L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~-~~~~~~l~~l~~l~~L~~  157 (325)
                      +.+.....        ......+..+..|+.+.+..+ ...+.....   ....|+.+.+. ........++..+.++..
T Consensus       142 i~lp~~~~--------~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF---~~~~l~~i~ip~~~~~i~~~af~~c~~l~~  209 (394)
T 4gt6_A          142 VTIPEGVT--------SVADGMFSYCYSLHTVTLPDS-VTAIEERAF---TGTALTQIHIPAKVTRIGTNAFSECFALST  209 (394)
T ss_dssp             EECCTTCC--------EECTTTTTTCTTCCEEECCTT-CCEECTTTT---TTCCCSEEEECTTCCEECTTTTTTCTTCCE
T ss_pred             ccccceee--------eecccceecccccccccccce-eeEeccccc---cccceeEEEECCcccccccchhhhccccce
Confidence            77765322        222334455666666665432 111111111   11235666654 222223333445555555


Q ss_pred             EEEc
Q 048462          158 LEID  161 (325)
Q Consensus       158 L~l~  161 (325)
                      ....
T Consensus       210 ~~~~  213 (394)
T 4gt6_A          210 ITSD  213 (394)
T ss_dssp             EEEC
T ss_pred             eccc
Confidence            5443

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.90  E-value=3.7e-06  Score=66.69  Aligned_cols=114  Identities=8%  Similarity=0.010  Sum_probs=50.5

Q ss_pred             hhhccccCceeeccCC-CCCe----eechhhhhCCCcccEEEecccceeeeeeccCcc----chhhhccCCCcceEEEEe
Q 048462           44 GITYLKNLKILRLDGM-RYLA----FVPCQVISSLSSLQVFSWFSTELVELHYVDSTS----VLAELESLENIHDISVTL  114 (325)
Q Consensus        44 ~l~~l~~L~~L~l~~~-~~~~----~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~----~~~~l~~l~~L~~L~l~~  114 (325)
                      .+...++|++|++++| .+..    .+... +...++|++|++++|.+       ...    +...+...+.|++|++++
T Consensus        31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~-L~~~~~L~~L~Ls~n~i-------~~~g~~~l~~~L~~n~~L~~L~L~~  102 (185)
T 1io0_A           31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEA-LKTNTYVKKFSIVGTRS-------NDPVAFALAEMLKVNNTLKSLNVES  102 (185)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHH-HTTCCSCCEEECTTSCC-------CHHHHHHHHHHHHHCSSCCEEECCS
T ss_pred             HHhcCCCCCEEEecCCCCCCHHHHHHHHHH-HHhCCCcCEEECcCCCC-------ChHHHHHHHHHHHhCCCcCEEECcC
Confidence            3445555666666654 3322    12222 44455566666666554       111    223334445566666665


Q ss_pred             cCcccc--cccccCccccCCceEEEE--ceeeee--c---ccc-cccCCCCCeEEEcCCCC
Q 048462          115 CNVDAV--NRVKSSPKLQSCIKRLAV--VLMASF--L---LPL-DLRMDHLETLEIDRCSL  165 (325)
Q Consensus       115 ~~~~~~--~~~~~~~~~~~~L~~L~l--~~~~~~--~---l~~-l~~l~~L~~L~l~~~~~  165 (325)
                      |.+...  ..+.........|++|++  +++...  .   +.. +...+.|++|++++|..
T Consensus       103 N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i  163 (185)
T 1io0_A          103 NFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  163 (185)
T ss_dssp             SCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             CcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence            554421  112222222234566666  322111  1   111 33445666666665553

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.87  E-value=0.00092  Score=59.39  Aligned_cols=81  Identities=12%  Similarity=0.104  Sum_probs=54.8

Q ss_pred             CCCCcEEecCCC--CCCCcCc-hhhhCcccCceecCCCCcccccCh-hhhccccCceeeccCCCCCeeechhhhhCCCcc
Q 048462            1 MHALAVLDLSYN--LDLVKLP-EAIGKLINLCYLNLSNTRIGQLPT-GITYLKNLKILRLDGMRYLAFVPCQVISSLSSL   76 (325)
Q Consensus         1 ~~~L~~L~l~~~--~~~~~lp-~~~~~l~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L   76 (325)
                      |.+|+.+.+..+  ..++.+. .+|..|.+|+.+.+..+ ++.+.. .+..+.+|+.+.+...  ...++...+..+.+|
T Consensus        86 C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~--~~~I~~~~F~~c~~L  162 (394)
T 4gt6_A           86 CTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVTIPEG--VTSVADGMFSYCYSL  162 (394)
T ss_dssp             CTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTC
T ss_pred             CccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccccccce--eeeecccceeccccc
Confidence            578999988765  2355553 56888999998887654 444433 3567888888888652  334444447778888


Q ss_pred             cEEEeccc
Q 048462           77 QVFSWFST   84 (325)
Q Consensus        77 ~~L~l~~~   84 (325)
                      +.+.+..+
T Consensus       163 ~~i~~~~~  170 (394)
T 4gt6_A          163 HTVTLPDS  170 (394)
T ss_dssp             CEEECCTT
T ss_pred             ccccccce
Confidence            88877654

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.58  E-value=0.012  Score=51.81  Aligned_cols=75  Identities=9%  Similarity=0.125  Sum_probs=42.3

Q ss_pred             CCcEEecCCCCCCCcCc-hhhhCcccCceecCCCCcccccChh-hhccccCceeeccCCCCCeeechhhhhCCCcccEEE
Q 048462            3 ALAVLDLSYNLDLVKLP-EAIGKLINLCYLNLSNTRIGQLPTG-ITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFS   80 (325)
Q Consensus         3 ~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~l~~lp~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~   80 (325)
                      +|+.+.+...  ++.++ .+|.+|.+|+.+.+..+ ++.+... +.++ +|+.+.+..+  ...++..++..+ +|+.+.
T Consensus        47 ~i~~v~ip~~--vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~--l~~I~~~aF~~~-~L~~i~  119 (379)
T 4h09_A           47 RISEVRVNSG--ITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER--VKKFGDYVFQGT-DLDDFE  119 (379)
T ss_dssp             GCSEEEECTT--EEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT--CCEECTTTTTTC-CCSEEE
T ss_pred             CCEEEEeCCC--ccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce--eeEeccceeccC-Cccccc
Confidence            4555655533  56664 45788888998888654 4444333 3444 5666665442  334444424443 677776


Q ss_pred             eccc
Q 048462           81 WFST   84 (325)
Q Consensus        81 l~~~   84 (325)
                      +..+
T Consensus       120 lp~~  123 (379)
T 4h09_A          120 FPGA  123 (379)
T ss_dssp             CCTT
T ss_pred             CCCc
Confidence            6553

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.56  E-value=7.3e-05  Score=62.57  Aligned_cols=87  Identities=13%  Similarity=0.174  Sum_probs=55.9

Q ss_pred             hhCcccCce--ecCCCCcccccCh----hhhccccCceeeccCCCCCe--eechhhhhCCCcccEEEecccceeeeeecc
Q 048462           22 IGKLINLCY--LNLSNTRIGQLPT----GITYLKNLKILRLDGMRYLA--FVPCQVISSLSSLQVFSWFSTELVELHYVD   93 (325)
Q Consensus        22 ~~~l~~L~~--L~l~~~~l~~lp~----~l~~l~~L~~L~l~~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~   93 (325)
                      +...+.|..  ++++.|....++.    ...++++|+.|++++|.+..  .++.. +..+++|+.|++++|.+       
T Consensus       137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~-~~~l~~L~~L~Ls~N~i-------  208 (267)
T 3rw6_A          137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSI-VQKAPNLKILNLSGNEL-------  208 (267)
T ss_dssp             GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTH-HHHSTTCCEEECTTSCC-------
T ss_pred             cCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhH-HhhCCCCCEEECCCCcc-------
Confidence            333444554  5566664433322    22568889999999976655  44454 67889999999999887       


Q ss_pred             CccchhhhccCC--CcceEEEEecCcc
Q 048462           94 STSVLAELESLE--NIHDISVTLCNVD  118 (325)
Q Consensus        94 ~~~~~~~l~~l~--~L~~L~l~~~~~~  118 (325)
                      ...  ..+..++  +|+.|.+.+|...
T Consensus       209 ~~~--~~l~~l~~l~L~~L~L~~Npl~  233 (267)
T 3rw6_A          209 KSE--RELDKIKGLKLEELWLDGNSLC  233 (267)
T ss_dssp             CSG--GGGGGGTTSCCSEEECTTSTTG
T ss_pred             CCc--hhhhhcccCCcceEEccCCcCc
Confidence            221  3333333  8889999888765

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.78  E-value=0.0012  Score=52.40  Aligned_cols=36  Identities=22%  Similarity=0.210  Sum_probs=16.0

Q ss_pred             cccCceecCCCCccc-----ccChhhhccccCceeeccCCC
Q 048462           25 LINLCYLNLSNTRIG-----QLPTGITYLKNLKILRLDGMR   60 (325)
Q Consensus        25 l~~L~~L~l~~~~l~-----~lp~~l~~l~~L~~L~l~~~~   60 (325)
                      -..|+.|+|++|.++     .+-..+..-..|++|++++|.
T Consensus        69 N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~  109 (197)
T 1pgv_A           69 SKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF  109 (197)
T ss_dssp             CSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB
T ss_pred             CCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCc
Confidence            344555555555442     222333444445555555443

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=96.73  E-value=0.15  Score=44.60  Aligned_cols=76  Identities=7%  Similarity=0.014  Sum_probs=41.7

Q ss_pred             CCCCcEEecCCCCCCCcCc-hhhhCcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEE
Q 048462            1 MHALAVLDLSYNLDLVKLP-EAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVF   79 (325)
Q Consensus         1 ~~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L   79 (325)
                      |.+|+.+++..+  ++.+. .+|.+| +|+.+.+..+ ++.+....-...+|+.+.+..+  ...+....+.++ +|+..
T Consensus        68 C~~L~~I~lp~~--v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~~L~~i~lp~~--~~~i~~~~F~~~-~l~~~  140 (379)
T 4h09_A           68 CYNMTKVTVAST--VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGTDLDDFEFPGA--TTEIGNYIFYNS-SVKRI  140 (379)
T ss_dssp             CTTCCEEEECTT--CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTCCCSEEECCTT--CCEECTTTTTTC-CCCEE
T ss_pred             CCCCCEEEeCCc--ceEechhhhcCC-CCceEECCce-eeEeccceeccCCcccccCCCc--cccccccccccc-eeeee
Confidence            578888988654  66664 456666 5777666543 4444443333347888887653  223333223333 44444


Q ss_pred             Eecc
Q 048462           80 SWFS   83 (325)
Q Consensus        80 ~l~~   83 (325)
                      .+..
T Consensus       141 ~~~~  144 (379)
T 4h09_A          141 VIPK  144 (379)
T ss_dssp             EECT
T ss_pred             eccc
Confidence            4443

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=95.64  E-value=0.018  Score=42.30  Aligned_cols=33  Identities=24%  Similarity=0.381  Sum_probs=15.4

Q ss_pred             cCceecCCCCcccccChh-hhccccCceeeccCC
Q 048462           27 NLCYLNLSNTRIGQLPTG-ITYLKNLKILRLDGM   59 (325)
Q Consensus        27 ~L~~L~l~~~~l~~lp~~-l~~l~~L~~L~l~~~   59 (325)
                      +|++|+|++|.++.+|.. +..+++|++|++.+|
T Consensus        32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   65 (130)
T 3rfe_A           32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGAN   65 (130)
T ss_dssp             TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred             CCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence            345555555555444443 233444444444443

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=94.15  E-value=0.064  Score=42.35  Aligned_cols=83  Identities=17%  Similarity=0.127  Sum_probs=55.7

Q ss_pred             CCCcEEecCCCCCCC-----cCchhhhCcccCceecCCCCccc-----ccChhhhccccCceeeccCCCC--Ce-----e
Q 048462            2 HALAVLDLSYNLDLV-----KLPEAIGKLINLCYLNLSNTRIG-----QLPTGITYLKNLKILRLDGMRY--LA-----F   64 (325)
Q Consensus         2 ~~L~~L~l~~~~~~~-----~lp~~~~~l~~L~~L~l~~~~l~-----~lp~~l~~l~~L~~L~l~~~~~--~~-----~   64 (325)
                      ..|+.|+|++| .++     .+.+.+..=+.|++|+|++|.++     .+-..+..-..|++|+++++..  .+     .
T Consensus        70 ~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~  148 (197)
T 1pgv_A           70 KHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMD  148 (197)
T ss_dssp             SCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHH
T ss_pred             CCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHH
Confidence            46899999999 777     33444555678999999999884     4445566677799999976422  22     1


Q ss_pred             echhhhhCCCcccEEEecccce
Q 048462           65 VPCQVISSLSSLQVFSWFSTEL   86 (325)
Q Consensus        65 ~~~~~~~~l~~L~~L~l~~~~~   86 (325)
                      +... +..-+.|+.|++..+..
T Consensus       149 ia~a-L~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          149 MMMA-IEENESLLRVGISFASM  169 (197)
T ss_dssp             HHHH-HHHCSSCCEEECCCCCH
T ss_pred             HHHH-HHhCCCcCeEeccCCCc
Confidence            2222 44556677777766543

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=93.67  E-value=0.085  Score=38.62  Aligned_cols=55  Identities=16%  Similarity=0.225  Sum_probs=39.1

Q ss_pred             ceecCCCCccc--ccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEecccce
Q 048462           29 CYLNLSNTRIG--QLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWFSTEL   86 (325)
Q Consensus        29 ~~L~l~~~~l~--~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~   86 (325)
                      ..++-++..++  .+|..+  -++|++|+|++|.+ ..++..++..+++|+.|++.+|.+
T Consensus        11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l-~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNL-TALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCC-SSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcC-CccChhhhhhccccCEEEecCCCe
Confidence            35666677776  777543  23688999998554 456655478888999999988865

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	325
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	6e-04
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	6e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	7e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.002
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.001
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.003
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.002
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.004
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	0.004

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (88), Expect = 6e-04
 Identities = 30/220 (13%), Positives = 68/220 (30%), Gaps = 11/220 (5%)

Query: 2   HALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRI--GQLPTGITYLKNLKILRLDGM 59
             +          + +          + +++LSN+ I    L   ++    L+ L L+G+
Sbjct: 23  QGVIAFRCP-RSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGL 81

Query: 60  RYLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDA 119
           R L+      ++  S+L   +               ++   L S   + +++++ C    
Sbjct: 82  R-LSDPIVNTLAKNSNLVRLNLSGC-----SGFSEFALQTLLSSCSRLDELNLSWCFDFT 135

Query: 120 VNRVKSSPKLQSCIKRLAVVLMASFLLPLDLRMDHLETLEIDRCSLESKNDYFGDQGRTR 179
              V+ +    S       +      L        +           S +    +     
Sbjct: 136 EKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQE 195

Query: 180 TYCFRNLRHLSVKTCPCMTD--LKWIRYAPNLQFLYVSYC 217
            +    L+HLS+  C  +    L  +   P L+ L V   
Sbjct: 196 FFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 235

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 38.6 bits (88), Expect = 6e-04
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 8   DLSYNLDLVKLPEAIGKLINLCYLNLSNTRI-GQLPTGITYLKNLKILRLDGMRYL 62
           DL  N     LP+ + +L  L  LN+S   + G++P G   L+   +      + L
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCL 304

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 38.7 bits (88), Expect = 7e-04
 Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 9/78 (11%)

Query: 1   MHALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMR 60
             +L  L++S N  L++LP        L  L  S   + ++P      +NLK L ++   
Sbjct: 283 PPSLEELNVSNN-KLIELPALPP---RLERLIASFNHLAEVP---ELPQNLKQLHVEYNP 335

Query: 61  YLAFVPCQVISSLSSLQV 78
            L   P  +  S+  L++
Sbjct: 336 -LREFP-DIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 37.1 bits (84), Expect = 0.002
 Identities = 19/79 (24%), Positives = 30/79 (37%), Gaps = 4/79 (5%)

Query: 4   LAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLA 63
              L+L+ NL L  LPE      +L  L  S   + +LP     LK+L +   +      
Sbjct: 40  AHELELN-NLGLSSLPELPP---HLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSD 95

Query: 64  FVPCQVISSLSSLQVFSWF 82
             P      +S+ Q+    
Sbjct: 96  LPPLLEYLGVSNNQLEKLP 114

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.1 bits (87), Expect = 0.001
 Identities = 13/76 (17%), Positives = 31/76 (40%), Gaps = 3/76 (3%)

Query: 1   MHALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMR 60
           +  L  L L +N ++  +   +  L  L  L  +N ++  + + +  L N+  L     +
Sbjct: 306 LKNLTYLTLYFN-NISDISP-VSSLTKLQRLFFANNKVSDVSS-LANLTNINWLSAGHNQ 362

Query: 61  YLAFVPCQVISSLSSL 76
                P   ++ ++ L
Sbjct: 363 ISDLTPLANLTRITQL 378

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.9 bits (84), Expect = 0.003
 Identities = 12/58 (20%), Positives = 24/58 (41%), Gaps = 3/58 (5%)

Query: 1   MHALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDG 58
           +  L  L  + N   V    ++  L N+ +L+  + +I  L   +  L  +  L L+ 
Sbjct: 328 LTKLQRLFFANNK--VSDVSSLANLTNINWLSAGHNQISDLT-PLANLTRITQLGLND 382

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 37.6 bits (85), Expect = 0.002
 Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 5/63 (7%)

Query: 1   MHALAVLDLSYN----LDLVKLPEAI-GKLINLCYLNLSNTRIGQLPTGITYLKNLKILR 55
              L  L L YN      +  L   I  K+ +L +L L+  R  +    +  ++ +   R
Sbjct: 272 NIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTR 331

Query: 56  LDG 58
             G
Sbjct: 332 GRG 334

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 34.7 bits (79), Expect = 0.004
 Identities = 21/96 (21%), Positives = 42/96 (43%), Gaps = 2/96 (2%)

Query: 6   VLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFV 65
           VL L++  DL  L   + +L+ + +L+LS+ R+  LP  +  L+ L++L+          
Sbjct: 2   VLHLAHK-DLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD 59

Query: 66  PCQVISSLSSLQVFSWFSTELVELHYVDSTSVLAEL 101
               +  L  L + +    +   +  + S   L  L
Sbjct: 60  GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLL 95

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 35.8 bits (81), Expect = 0.004
 Identities = 12/59 (20%), Positives = 26/59 (44%), Gaps = 2/59 (3%)

Query: 4  LAVLDLSYNL-DLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRY 61
             ++L   +  + K+   +  L    +L LS   I ++   ++ ++NL+IL L     
Sbjct: 25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLI 82

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	325
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.84
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.83
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.83
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.77
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.76
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.75
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.75
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.74
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.74
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.69
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.68
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.68
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.66
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.65
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.65
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.64
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.62
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.61
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.61
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.6
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.58
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.44
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.4
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.37
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.29
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.21
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.21
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.1
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.09
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.09
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.05
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.04
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.97
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.83
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.76
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.69
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.01
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.96
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.8
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.47
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.83
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	95.91

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.84  E-value=2.2e-19  Score=158.37  Aligned_cols=258  Identities=12%  Similarity=0.173  Sum_probs=158.7

Q ss_pred             CCCcEEecCCCCCCCcCchhhhCcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEe
Q 048462            2 HALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSW   81 (325)
Q Consensus         2 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l   81 (325)
                      .+|++|+++++ .++.+ +.++.+++|++|++++|+++.++. +.++++|++|++++|.+. .++.  ++.+++|+.|++
T Consensus        44 ~~l~~L~l~~~-~I~~l-~gl~~L~nL~~L~Ls~N~l~~l~~-l~~L~~L~~L~L~~n~i~-~i~~--l~~l~~L~~L~~  117 (384)
T d2omza2          44 DQVTTLQADRL-GIKSI-DGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIA-DITP--LANLTNLTGLTL  117 (384)
T ss_dssp             TTCCEEECCSS-CCCCC-TTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEEC
T ss_pred             CCCCEEECCCC-CCCCc-cccccCCCCCEEeCcCCcCCCCcc-ccCCcccccccccccccc-cccc--cccccccccccc
Confidence            57999999999 88887 468899999999999999998875 899999999999997654 4444  889999999999


Q ss_pred             cccceeeeee--------------------------------------------------------ccCccchhhhccCC
Q 048462           82 FSTELVELHY--------------------------------------------------------VDSTSVLAELESLE  105 (325)
Q Consensus        82 ~~~~~~~~~~--------------------------------------------------------~~~~~~~~~l~~l~  105 (325)
                      .++.......                                                        ............++
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  197 (384)
T d2omza2         118 FNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLT  197 (384)
T ss_dssp             CSSCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCT
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccchhhhhcccccccccccccccccccccccccc
Confidence            8866521100                                                        00011112344456


Q ss_pred             CcceEEEEecCcccccccccCccccCCceEEEEceeeeecccccccCCCCCeEEEcCCCCceeccccCCCCCcccccccc
Q 048462          106 NIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPLDLRMDHLETLEIDRCSLESKNDYFGDQGRTRTYCFRN  185 (325)
Q Consensus       106 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~  185 (325)
                      +++.+.+.++....+...    ..+.++++|+++++....++.+..+++|+.+++.+|....         ..+...+++
T Consensus       198 ~~~~l~l~~n~i~~~~~~----~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~---------~~~~~~~~~  264 (384)
T d2omza2         198 NLESLIATNNQISDITPL----GILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISN---------LAPLSGLTK  264 (384)
T ss_dssp             TCSEEECCSSCCCCCGGG----GGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCC---------CGGGTTCTT
T ss_pred             ccceeeccCCccCCCCcc----cccCCCCEEECCCCCCCCcchhhcccccchhccccCccCC---------CCccccccc
Confidence            666666666655544322    2233567777776665566667777777777777776431         112244566


Q ss_pred             ccEEEecCCCCCCccccccCCCCccEEEEeccCCchhhcccCCCC----------CCCccccccccCCcccEEeccCCCC
Q 048462          186 LRHLSVKTCPCMTDLKWIRYAPNLQFLYVSYCPRLSEIIGTYESP----------GTSEIEESQDFFSNLMVIDLRHLPS  255 (325)
Q Consensus       186 L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~----------~~~~~~~~~~~~~~L~~L~l~~~~~  255 (325)
                      |++|+++++ .++.++.+..++.++.+.+..|.. +.+.......          ...++ ..+..+++|++|++++| .
T Consensus       265 L~~L~l~~~-~l~~~~~~~~~~~l~~l~~~~n~l-~~~~~~~~~~~l~~L~ls~n~l~~l-~~l~~l~~L~~L~L~~n-~  340 (384)
T d2omza2         265 LTELKLGAN-QISNISPLAGLTALTNLELNENQL-EDISPISNLKNLTYLTLYFNNISDI-SPVSSLTKLQRLFFANN-K  340 (384)
T ss_dssp             CSEEECCSS-CCCCCGGGTTCTTCSEEECCSSCC-SCCGGGGGCTTCSEEECCSSCCSCC-GGGGGCTTCCEEECCSS-C
T ss_pred             CCEeeccCc-ccCCCCcccccccccccccccccc-ccccccchhcccCeEECCCCCCCCC-cccccCCCCCEEECCCC-C
Confidence            666666665 455444444444444444443321 1110000000          00111 13566777788888777 5


Q ss_pred             cceeccCcccCCCccEEeeeCCCCCCCCC
Q 048462          256 LTSICCGVVPFPSLQTISVNGCPSLRKLP  284 (325)
Q Consensus       256 l~~~~~~~~~~~~L~~L~l~~c~~l~~ip  284 (325)
                      ++.++. ...+++|++|++++| +++.++
T Consensus       341 l~~l~~-l~~l~~L~~L~l~~N-~l~~l~  367 (384)
T d2omza2         341 VSDVSS-LANLTNINWLSAGHN-QISDLT  367 (384)
T ss_dssp             CCCCGG-GGGCTTCCEEECCSS-CCCBCG
T ss_pred             CCCChh-HcCCCCCCEEECCCC-cCCCCh
Confidence            666553 455777888888666 677665

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.83  E-value=1.5e-19  Score=159.36  Aligned_cols=243  Identities=15%  Similarity=0.202  Sum_probs=175.8

Q ss_pred             CCCCcEEecCCCCCCCcCchhhhCcccCceecCCCCcccccChhhhccccCceeeccCCCCCeee---------------
Q 048462            1 MHALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFV---------------   65 (325)
Q Consensus         1 ~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~---------------   65 (325)
                      |++|++|++++| .++.+|+ +++|++|++|++++|.+..++. +.++++|+.++++++......               
T Consensus        65 L~nL~~L~Ls~N-~l~~l~~-l~~L~~L~~L~L~~n~i~~i~~-l~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (384)
T d2omza2          65 LNNLTQINFSNN-QLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSS  141 (384)
T ss_dssp             CTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEEEE
T ss_pred             CCCCCEEeCcCC-cCCCCcc-ccCCcccccccccccccccccc-cccccccccccccccccccccccccccccccccccc
Confidence            579999999999 8999874 9999999999999999987764 889999999998765332100               


Q ss_pred             ------------------------------------------------chhhhhCCCcccEEEecccceeeeeeccCccc
Q 048462           66 ------------------------------------------------PCQVISSLSSLQVFSWFSTELVELHYVDSTSV   97 (325)
Q Consensus        66 ------------------------------------------------~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~   97 (325)
                                                                      ... ...+++++.+++..+.+       ... 
T Consensus       142 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~l~l~~n~i-------~~~-  212 (384)
T d2omza2         142 NTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISV-LAKLTNLESLIATNNQI-------SDI-  212 (384)
T ss_dssp             EEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECCSSCC-------CCC-
T ss_pred             ccccccccccccccccccccccccchhhhhccccccccccccccccccccc-cccccccceeeccCCcc-------CCC-
Confidence                                                            112 44566777777777665       221 


Q ss_pred             hhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccccccCCCCCeEEEcCCCCceecc-c-----
Q 048462           98 LAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPLDLRMDHLETLEIDRCSLESKND-Y-----  171 (325)
Q Consensus        98 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~-~-----  171 (325)
                       ......++|+.|++.++....++.+..    ...++.++++++....++.+..+++|++++++++....... .     
T Consensus       213 -~~~~~~~~L~~L~l~~n~l~~~~~l~~----l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l  287 (384)
T d2omza2         213 -TPLGILTNLDELSLNGNQLKDIGTLAS----LTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTAL  287 (384)
T ss_dssp             -GGGGGCTTCCEEECCSSCCCCCGGGGG----CTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTC
T ss_pred             -CcccccCCCCEEECCCCCCCCcchhhc----ccccchhccccCccCCCCcccccccCCEeeccCcccCCCCcccccccc
Confidence             224556788888888887666543332    23478888887666666677788888888887776432110 0     


Q ss_pred             ------cCCCCCcc-ccccccccEEEecCCCCCCccccccCCCCccEEEEeccCCchhhcccCCCCCCCccccccccCCc
Q 048462          172 ------FGDQGRTR-TYCFRNLRHLSVKTCPCMTDLKWIRYAPNLQFLYVSYCPRLSEIIGTYESPGTSEIEESQDFFSN  244 (325)
Q Consensus       172 ------~~~~~~~~-~~~~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  244 (325)
                            ......++ ...++++++|+++++ ++++++.+..+++|++|++++|. ++.+.             .+..+++
T Consensus       288 ~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n-~l~~l~~l~~l~~L~~L~L~~n~-l~~l~-------------~l~~l~~  352 (384)
T d2omza2         288 TNLELNENQLEDISPISNLKNLTYLTLYFN-NISDISPVSSLTKLQRLFFANNK-VSDVS-------------SLANLTN  352 (384)
T ss_dssp             SEEECCSSCCSCCGGGGGCTTCSEEECCSS-CCSCCGGGGGCTTCCEEECCSSC-CCCCG-------------GGGGCTT
T ss_pred             ccccccccccccccccchhcccCeEECCCC-CCCCCcccccCCCCCEEECCCCC-CCCCh-------------hHcCCCC
Confidence                  00001111 256789999999999 88888888899999999999995 44432             5678999


Q ss_pred             ccEEeccCCCCcceeccCcccCCCccEEeeeCC
Q 048462          245 LMVIDLRHLPSLTSICCGVVPFPSLQTISVNGC  277 (325)
Q Consensus       245 L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c  277 (325)
                      |++|++++| +++.++. ...+++|++|+++++
T Consensus       353 L~~L~l~~N-~l~~l~~-l~~l~~L~~L~L~~N  383 (384)
T d2omza2         353 INWLSAGHN-QISDLTP-LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CCEEECCSS-CCCBCGG-GTTCTTCSEEECCCE
T ss_pred             CCEEECCCC-cCCCChh-hccCCCCCEeeCCCC
Confidence            999999987 6777765 456899999999764

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.83  E-value=1.1e-20  Score=162.70  Aligned_cols=247  Identities=17%  Similarity=0.197  Sum_probs=184.7

Q ss_pred             CCcEEecCCCCCCC---cCchhhhCcccCceecCCC-Ccc-cccChhhhccccCceeeccCCCCCeeechhhhhCCCccc
Q 048462            3 ALAVLDLSYNLDLV---KLPEAIGKLINLCYLNLSN-TRI-GQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQ   77 (325)
Q Consensus         3 ~L~~L~l~~~~~~~---~lp~~~~~l~~L~~L~l~~-~~l-~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~   77 (325)
                      +++.|+|+++ .+.   .+|+.++++++|++|++++ +.+ +.+|..++++++|++|++++|.+.+..+.. +..+.+|+
T Consensus        51 ~v~~L~L~~~-~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~-~~~~~~L~  128 (313)
T d1ogqa_          51 RVNNLDLSGL-NLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDF-LSQIKTLV  128 (313)
T ss_dssp             CEEEEEEECC-CCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGG-GGGCTTCC
T ss_pred             EEEEEECCCC-CCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhcccccccccccc-ccchhhhc
Confidence            5889999999 565   5789999999999999997 567 489999999999999999998887777766 88999999


Q ss_pred             EEEecccceeeeeeccCccchhhhccCCCcceEEEEecCcccc-cccccCccccCCceEEEEceeeeec-ccc-cccCCC
Q 048462           78 VFSWFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAV-NRVKSSPKLQSCIKRLAVVLMASFL-LPL-DLRMDH  154 (325)
Q Consensus        78 ~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~-l~~-l~~l~~  154 (325)
                      .+++..|..       ....+..+..+++++.+++.++...+. +..  ...+...++.+.+++..... .+. +..+. 
T Consensus       129 ~l~l~~N~~-------~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~--~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~-  198 (313)
T d1ogqa_         129 TLDFSYNAL-------SGTLPPSISSLPNLVGITFDGNRISGAIPDS--YGSFSKLFTSMTISRNRLTGKIPPTFANLN-  198 (313)
T ss_dssp             EEECCSSEE-------ESCCCGGGGGCTTCCEEECCSSCCEEECCGG--GGCCCTTCCEEECCSSEEEEECCGGGGGCC-
T ss_pred             ccccccccc-------cccCchhhccCcccceeeccccccccccccc--cccccccccccccccccccccccccccccc-
Confidence            999999987       567788899999999999999876532 221  11222335667766443332 222 54444 


Q ss_pred             CCeEEEcCCCCceeccccCCCCCccc--cccccccEEEecCCCCCCccccccCCCCccEEEEeccCCchhhcccCCCCCC
Q 048462          155 LETLEIDRCSLESKNDYFGDQGRTRT--YCFRNLRHLSVKTCPCMTDLKWIRYAPNLQFLYVSYCPRLSEIIGTYESPGT  232 (325)
Q Consensus       155 L~~L~l~~~~~~~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~  232 (325)
                      ...+++..+...         +.++.  ..+++++.++++++.....++.+..+++|+.|++++|.....          
T Consensus       199 ~~~l~l~~~~~~---------~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~----------  259 (313)
T d1ogqa_         199 LAFVDLSRNMLE---------GDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGT----------  259 (313)
T ss_dssp             CSEEECCSSEEE---------ECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEEC----------
T ss_pred             cccccccccccc---------ccccccccccccccccccccccccccccccccccccccccCccCeeccc----------
Confidence            346777766542         22222  467899999999984333466777889999999999975333          


Q ss_pred             CccccccccCCcccEEeccCCCCcc-eeccCcccCCCccEEeeeCCCCCCCCC
Q 048462          233 SEIEESQDFFSNLMVIDLRHLPSLT-SICCGVVPFPSLQTISVNGCPSLRKLP  284 (325)
Q Consensus       233 ~~~~~~~~~~~~L~~L~l~~~~~l~-~~~~~~~~~~~L~~L~l~~c~~l~~ip  284 (325)
                        +|..++.+++|++|++++| ++. .+|. ...+.+|+.+++.+++.+...|
T Consensus       260 --iP~~l~~L~~L~~L~Ls~N-~l~g~iP~-~~~L~~L~~l~l~~N~~l~g~p  308 (313)
T d1ogqa_         260 --LPQGLTQLKFLHSLNVSFN-NLCGEIPQ-GGNLQRFDVSAYANNKCLCGSP  308 (313)
T ss_dssp             --CCGGGGGCTTCCEEECCSS-EEEEECCC-STTGGGSCGGGTCSSSEEESTT
T ss_pred             --CChHHhCCCCCCEEECcCC-cccccCCC-cccCCCCCHHHhCCCccccCCC
Confidence              3458889999999999997 555 5654 4567889999999987777655

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.77  E-value=2e-17  Score=141.34  Aligned_cols=242  Identities=17%  Similarity=0.153  Sum_probs=173.0

Q ss_pred             CcEEecCCCCCCCcCchhhhCcccCceecCCCCcccccCh-hhhccccCceeeccCCCCCeeechhhhhCCCcccEEEec
Q 048462            4 LAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPT-GITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWF   82 (325)
Q Consensus         4 L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~   82 (325)
                      .+.+|=++. .++.+|..+.  +++++|++++|+++++|. .+.++++|++|++++|......|.. +.++++|++|+++
T Consensus        12 ~~~~~C~~~-~L~~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~-f~~l~~L~~L~l~   87 (305)
T d1xkua_          12 LRVVQCSDL-GLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGA-FAPLVKLERLYLS   87 (305)
T ss_dssp             TTEEECTTS-CCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTT-TTTCTTCCEEECC
T ss_pred             CCEEEecCC-CCCccCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhh-hhCCCccCEeccc
Confidence            355655665 6888887664  689999999999999986 5788999999999997766555555 8899999999999


Q ss_pred             ccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeee----cccccccCCCCCeE
Q 048462           83 STELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASF----LLPLDLRMDHLETL  158 (325)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~----~l~~l~~l~~L~~L  158 (325)
                      +|.+        ..++..  ....++.|.+..+....+......  .......+........    ....+..+++|+.+
T Consensus        88 ~n~l--------~~l~~~--~~~~l~~L~~~~n~l~~l~~~~~~--~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l  155 (305)
T d1xkua_          88 KNQL--------KELPEK--MPKTLQELRVHENEITKVRKSVFN--GLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYI  155 (305)
T ss_dssp             SSCC--------SBCCSS--CCTTCCEEECCSSCCCBBCHHHHT--TCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEE
T ss_pred             CCcc--------CcCccc--hhhhhhhhhccccchhhhhhhhhh--ccccccccccccccccccCCCccccccccccCcc
Confidence            9987        233332  235778888877766655433211  1122455555532221    11227778899999


Q ss_pred             EEcCCCCceeccccCCCCCccccccccccEEEecCCCCCCcc--ccccCCCCccEEEEeccCCchhhcccCCCCCCCccc
Q 048462          159 EIDRCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDL--KWIRYAPNLQFLYVSYCPRLSEIIGTYESPGTSEIE  236 (325)
Q Consensus       159 ~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l--~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~  236 (325)
                      ++.+|...          .++...+++|++|+++++ .....  ..+..++.+++|++++|. ++.+..           
T Consensus       156 ~l~~n~l~----------~l~~~~~~~L~~L~l~~n-~~~~~~~~~~~~~~~l~~L~~s~n~-l~~~~~-----------  212 (305)
T d1xkua_         156 RIADTNIT----------TIPQGLPPSLTELHLDGN-KITKVDAASLKGLNNLAKLGLSFNS-ISAVDN-----------  212 (305)
T ss_dssp             ECCSSCCC----------SCCSSCCTTCSEEECTTS-CCCEECTGGGTTCTTCCEEECCSSC-CCEECT-----------
T ss_pred             ccccCCcc----------ccCcccCCccCEEECCCC-cCCCCChhHhhcccccccccccccc-cccccc-----------
Confidence            99988753          233345789999999988 44443  356678899999999885 343332           


Q ss_pred             cccccCCcccEEeccCCCCcceeccCcccCCCccEEeeeCCCCCCCCCCC
Q 048462          237 ESQDFFSNLMVIDLRHLPSLTSICCGVVPFPSLQTISVNGCPSLRKLPLN  286 (325)
Q Consensus       237 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~ip~~  286 (325)
                      ..+..+++|++|++++| .++.++.....+++|+.|+++++ +|+.++..
T Consensus       213 ~~~~~l~~L~~L~L~~N-~L~~lp~~l~~l~~L~~L~Ls~N-~i~~i~~~  260 (305)
T d1xkua_         213 GSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNN-NISAIGSN  260 (305)
T ss_dssp             TTGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSS-CCCCCCTT
T ss_pred             ccccccccceeeecccc-cccccccccccccCCCEEECCCC-ccCccChh
Confidence            36678899999999998 78888877777999999999987 78888653

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.76  E-value=3.2e-17  Score=140.11  Aligned_cols=242  Identities=17%  Similarity=0.181  Sum_probs=163.2

Q ss_pred             CCCcEEecCCCCCCCcCch-hhhCcccCceecCCCCccccc-ChhhhccccCceeeccCCCCCeeechhhhhCCCcccEE
Q 048462            2 HALAVLDLSYNLDLVKLPE-AIGKLINLCYLNLSNTRIGQL-PTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVF   79 (325)
Q Consensus         2 ~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~l~~l-p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L   79 (325)
                      +++++|++++| .++.+|+ .+.++++|++|++++|.+..+ |..+.++++|++|++++|. ...+|..   ....++.|
T Consensus        31 ~~l~~L~Ls~N-~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~-l~~l~~~---~~~~l~~L  105 (305)
T d1xkua_          31 PDTALLDLQNN-KITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ-LKELPEK---MPKTLQEL  105 (305)
T ss_dssp             TTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CSBCCSS---CCTTCCEE
T ss_pred             CCCCEEECcCC-cCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCc-cCcCccc---hhhhhhhh
Confidence            57899999999 8999975 689999999999999998776 5568999999999999975 4456643   34578888


Q ss_pred             EecccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccccccCCCCCeEE
Q 048462           80 SWFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPLDLRMDHLETLE  159 (325)
Q Consensus        80 ~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~l~~L~~L~  159 (325)
                      +...+.+       .......+.....+..+....+.................++.++++++....++. ..+++|+.|+
T Consensus       106 ~~~~n~l-------~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~-~~~~~L~~L~  177 (305)
T d1xkua_         106 RVHENEI-------TKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ-GLPPSLTELH  177 (305)
T ss_dssp             ECCSSCC-------CBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCS-SCCTTCSEEE
T ss_pred             hccccch-------hhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccccCc-ccCCccCEEE
Confidence            8888876       3333344555566666666555433322222222223456777777655544443 2357888888


Q ss_pred             EcCCCCceeccccCCCCCccccccccccEEEecCCCCCCccc--cccCCCCccEEEEeccCCchhhcccCCCCCCCcccc
Q 048462          160 IDRCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDLK--WIRYAPNLQFLYVSYCPRLSEIIGTYESPGTSEIEE  237 (325)
Q Consensus       160 l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~--~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~  237 (325)
                      ++++......     ...+  ..++.++.|+++++ .+++++  ++..+++|++|++++|. ++.+.            .
T Consensus       178 l~~n~~~~~~-----~~~~--~~~~~l~~L~~s~n-~l~~~~~~~~~~l~~L~~L~L~~N~-L~~lp------------~  236 (305)
T d1xkua_         178 LDGNKITKVD-----AASL--KGLNNLAKLGLSFN-SISAVDNGSLANTPHLRELHLNNNK-LVKVP------------G  236 (305)
T ss_dssp             CTTSCCCEEC-----TGGG--TTCTTCCEEECCSS-CCCEECTTTGGGSTTCCEEECCSSC-CSSCC------------T
T ss_pred             CCCCcCCCCC-----hhHh--hccccccccccccc-cccccccccccccccceeeeccccc-ccccc------------c
Confidence            8887754221     1111  34677888888887 677653  45567888888888874 34332            3


Q ss_pred             ccccCCcccEEeccCCCCcceeccCc-------ccCCCccEEeeeCCC
Q 048462          238 SQDFFSNLMVIDLRHLPSLTSICCGV-------VPFPSLQTISVNGCP  278 (325)
Q Consensus       238 ~~~~~~~L~~L~l~~~~~l~~~~~~~-------~~~~~L~~L~l~~c~  278 (325)
                      .+..+++|++|+++++ +++.++...       ...++|+.|++.+++
T Consensus       237 ~l~~l~~L~~L~Ls~N-~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~  283 (305)
T d1xkua_         237 GLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNP  283 (305)
T ss_dssp             TTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred             ccccccCCCEEECCCC-ccCccChhhccCcchhcccCCCCEEECCCCc
Confidence            6677888888888886 566654321       225678888888774

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.75  E-value=8.8e-18  Score=137.42  Aligned_cols=189  Identities=17%  Similarity=0.248  Sum_probs=107.8

Q ss_pred             hhCcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEecccceeeeeeccCccchhhh
Q 048462           22 IGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLAEL  101 (325)
Q Consensus        22 ~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l  101 (325)
                      .+.+.+|++|++.+|.++.+ .++.++++|++|++++|.+.. ++.  +..+++|+.+++.++..       .  ....+
T Consensus        37 ~~~l~~L~~L~l~~~~i~~l-~~l~~l~~L~~L~ls~n~i~~-~~~--l~~l~~l~~l~~~~n~~-------~--~i~~l  103 (227)
T d1h6ua2          37 QADLDGITTLSAFGTGVTTI-EGVQYLNNLIGLELKDNQITD-LAP--LKNLTKITELELSGNPL-------K--NVSAI  103 (227)
T ss_dssp             HHHHHTCCEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCCC-CGG--GTTCCSCCEEECCSCCC-------S--CCGGG
T ss_pred             HHHcCCcCEEECCCCCCCcc-hhHhcCCCCcEeecCCceeec-ccc--ccccccccccccccccc-------c--ccccc
Confidence            45567777777777777666 356777777777777754433 332  66777777777777655       1  23345


Q ss_pred             ccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccccccCCCCCeEEEcCCCCceeccccCCCCCcccc
Q 048462          102 ESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPLDLRMDHLETLEIDRCSLESKNDYFGDQGRTRTY  181 (325)
Q Consensus       102 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~  181 (325)
                      ..+++|+.+.+.++.....                          +.+...+.+..+.+.++...         ...+..
T Consensus       104 ~~l~~L~~l~l~~~~~~~~--------------------------~~~~~~~~~~~l~~~~~~~~---------~~~~~~  148 (227)
T d1h6ua2         104 AGLQSIKTLDLTSTQITDV--------------------------TPLAGLSNLQVLYLDLNQIT---------NISPLA  148 (227)
T ss_dssp             TTCTTCCEEECTTSCCCCC--------------------------GGGTTCTTCCEEECCSSCCC---------CCGGGG
T ss_pred             ccccccccccccccccccc--------------------------chhccccchhhhhchhhhhc---------hhhhhc
Confidence            5666666666655544332                          22334445555555444432         111113


Q ss_pred             ccccccEEEecCCCCCCccccccCCCCccEEEEeccCCchhhcccCCCCCCCccccccccCCcccEEeccCCCCcceecc
Q 048462          182 CFRNLRHLSVKTCPCMTDLKWIRYAPNLQFLYVSYCPRLSEIIGTYESPGTSEIEESQDFFSNLMVIDLRHLPSLTSICC  261 (325)
Q Consensus       182 ~~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~  261 (325)
                      .+++|++|+++++ .+.+...+.++++|+.|++++|. ++++.             .+..+++|++|++++| ++++++.
T Consensus       149 ~~~~L~~L~l~~n-~~~~~~~l~~l~~L~~L~Ls~n~-l~~l~-------------~l~~l~~L~~L~Ls~N-~lt~i~~  212 (227)
T d1h6ua2         149 GLTNLQYLSIGNA-QVSDLTPLANLSKLTTLKADDNK-ISDIS-------------PLASLPNLIEVHLKNN-QISDVSP  212 (227)
T ss_dssp             GCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSC-CCCCG-------------GGGGCTTCCEEECTTS-CCCBCGG
T ss_pred             ccccccccccccc-ccccchhhcccccceecccCCCc-cCCCh-------------hhcCCCCCCEEECcCC-cCCCCcc
Confidence            4556666666665 55555555566666666666653 33321             3455666666666665 4555543


Q ss_pred             CcccCCCccEEeee
Q 048462          262 GVVPFPSLQTISVN  275 (325)
Q Consensus       262 ~~~~~~~L~~L~l~  275 (325)
                       ...+++|+.|+++
T Consensus       213 -l~~l~~L~~L~ls  225 (227)
T d1h6ua2         213 -LANTSNLFIVTLT  225 (227)
T ss_dssp             -GTTCTTCCEEEEE
T ss_pred             -cccCCCCCEEEee
Confidence             3356666666664

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.75  E-value=1.8e-17  Score=135.54  Aligned_cols=143  Identities=20%  Similarity=0.262  Sum_probs=98.1

Q ss_pred             CCCcEEecCCCCCCCcCchhhhCcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEe
Q 048462            2 HALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSW   81 (325)
Q Consensus         2 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l   81 (325)
                      .+|+.|++.+| .++.++ .+..+++|++|++++|.+..++. +.++++|+++++++|.. +.++.  +..+++|+.+++
T Consensus        41 ~~L~~L~l~~~-~i~~l~-~l~~l~~L~~L~ls~n~i~~~~~-l~~l~~l~~l~~~~n~~-~~i~~--l~~l~~L~~l~l  114 (227)
T d1h6ua2          41 DGITTLSAFGT-GVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPL-KNVSA--IAGLQSIKTLDL  114 (227)
T ss_dssp             HTCCEEECTTS-CCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCC-SCCGG--GTTCTTCCEEEC
T ss_pred             CCcCEEECCCC-CCCcch-hHhcCCCCcEeecCCceeecccc-ccccccccccccccccc-ccccc--cccccccccccc
Confidence            57899999999 899984 68999999999999999987754 89999999999999654 45554  889999999999


Q ss_pred             cccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccccccCCCCCeEEEc
Q 048462           82 FSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPLDLRMDHLETLEID  161 (325)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~l~~L~~L~l~  161 (325)
                      ..+..         .....+...+.++.+.+..+.......+..    +..++.|+++++.....+.++.+++|+.|+++
T Consensus       115 ~~~~~---------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~----~~~L~~L~l~~n~~~~~~~l~~l~~L~~L~Ls  181 (227)
T d1h6ua2         115 TSTQI---------TDVTPLAGLSNLQVLYLDLNQITNISPLAG----LTNLQYLSIGNAQVSDLTPLANLSKLTTLKAD  181 (227)
T ss_dssp             TTSCC---------CCCGGGTTCTTCCEEECCSSCCCCCGGGGG----CTTCCEEECCSSCCCCCGGGTTCTTCCEEECC
T ss_pred             ccccc---------cccchhccccchhhhhchhhhhchhhhhcc----ccccccccccccccccchhhcccccceecccC
Confidence            99876         223345667777777776665443322211    12244444444333333334444444444444


Q ss_pred             CC
Q 048462          162 RC  163 (325)
Q Consensus       162 ~~  163 (325)
                      +|
T Consensus       182 ~n  183 (227)
T d1h6ua2         182 DN  183 (227)
T ss_dssp             SS
T ss_pred             CC
Confidence            44

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=1.1e-18  Score=147.83  Aligned_cols=247  Identities=16%  Similarity=0.143  Sum_probs=158.3

Q ss_pred             cEEecCCCCCCCcCchhhhCc--ccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEec
Q 048462            5 AVLDLSYNLDLVKLPEAIGKL--INLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWF   82 (325)
Q Consensus         5 ~~L~l~~~~~~~~lp~~~~~l--~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~   82 (325)
                      +.+|++++ .+.  |+.+..+  .....+.+..+.+...........+|++|++++|..........+..+++|++|++.
T Consensus         3 ~~lDLs~~-~l~--~~~l~~l~~~~~~~lrl~~~~~~~~~~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~   79 (284)
T d2astb2           3 QTLDLTGK-NLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE   79 (284)
T ss_dssp             SEEECTTC-BCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT
T ss_pred             CEEECCCC-CCC--chHHHHHHhccceEeeccccccccchhhhccCCCCCEEECCCCccCHHHHHHHHHhCCCccccccc
Confidence            47888887 332  3333332  234455555444333333344567888888888765443333326778888888888


Q ss_pred             ccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeec---ccc-cc-cCCCCCe
Q 048462           83 STELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFL---LPL-DL-RMDHLET  157 (325)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~---l~~-l~-~l~~L~~  157 (325)
                      +|.+       ....+..+..+++|++|++++|......++......+++|++|++++|..+.   +.. +. .+++|+.
T Consensus        80 ~~~l-------~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~  152 (284)
T d2astb2          80 GLRL-------SDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQ  152 (284)
T ss_dssp             TCBC-------CHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCE
T ss_pred             ccCC-------CcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccch
Confidence            8876       5666777888888888888876544333333333344568888888765442   222 33 3578999


Q ss_pred             EEEcCCCC-ceeccccCCCCCccc--cccccccEEEecCCCCCCc--cccccCCCCccEEEEeccCCchhhcccCCCCCC
Q 048462          158 LEIDRCSL-ESKNDYFGDQGRTRT--YCFRNLRHLSVKTCPCMTD--LKWIRYAPNLQFLYVSYCPRLSEIIGTYESPGT  232 (325)
Q Consensus       158 L~l~~~~~-~~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~l~~--l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~  232 (325)
                      |+++++.. +..       ..+..  ..+++|++|++++|..+++  +..+..+++|++|++++|..+++...       
T Consensus       153 L~l~~~~~~i~~-------~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l-------  218 (284)
T d2astb2         153 LNLSGYRKNLQK-------SDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETL-------  218 (284)
T ss_dssp             EECCSCGGGSCH-------HHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGG-------
T ss_pred             hhhccccccccc-------ccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHH-------
Confidence            99988753 210       01111  4678999999999977875  45677899999999999987765432       


Q ss_pred             CccccccccCCcccEEeccCCCCcceeccCcccCCCccEEeeeCCCCCCCC
Q 048462          233 SEIEESQDFFSNLMVIDLRHLPSLTSICCGVVPFPSLQTISVNGCPSLRKL  283 (325)
Q Consensus       233 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~i  283 (325)
                          ..++.+|+|+.|++.+|-.-..+......+|+|+   + +|..++.+
T Consensus       219 ----~~L~~~~~L~~L~l~~~~~d~~l~~l~~~lp~L~---i-~~~~ls~~  261 (284)
T d2astb2         219 ----LELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQ---I-NCSHFTTI  261 (284)
T ss_dssp             ----GGGGGCTTCCEEECTTSSCTTCHHHHHHHSTTSE---E-SCCCSCCT
T ss_pred             ----HHHhcCCCCCEEeeeCCCCHHHHHHHHHhCcccc---c-cCccCCCC
Confidence                3567889999999999833333333333467765   3 67777754

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.74  E-value=2.3e-18  Score=147.91  Aligned_cols=224  Identities=18%  Similarity=0.157  Sum_probs=168.0

Q ss_pred             CCCCcEEecCCCCCCC-cCchhhhCcccCceecCCCCcccc-cChhhhccccCceeeccCCCCCeeechhhhhCCCcccE
Q 048462            1 MHALAVLDLSYNLDLV-KLPEAIGKLINLCYLNLSNTRIGQ-LPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQV   78 (325)
Q Consensus         1 ~~~L~~L~l~~~~~~~-~lp~~~~~l~~L~~L~l~~~~l~~-lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~   78 (325)
                      +++|++|+|+++..+. .+|+.++++++|++|++++|++.. .+..+..+.+|+.+++++|.....+|.. +.++++|+.
T Consensus        75 L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~-l~~l~~L~~  153 (313)
T d1ogqa_          75 LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS-ISSLPNLVG  153 (313)
T ss_dssp             CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGG-GGGCTTCCE
T ss_pred             CccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchh-hccCcccce
Confidence            5789999999732444 899999999999999999999864 4556888999999999998888888888 999999999


Q ss_pred             EEecccceeeeeeccCccchhhhccCCCc-ceEEEEecCcccccccccCccccCCceEEEEceeeee-cccc-cccCCCC
Q 048462           79 FSWFSTELVELHYVDSTSVLAELESLENI-HDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASF-LLPL-DLRMDHL  155 (325)
Q Consensus        79 L~l~~~~~~~~~~~~~~~~~~~l~~l~~L-~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~l~~-l~~l~~L  155 (325)
                      +++++|.+       ....+..+..+..+ +.+.+..+...+..... ...+  ....+++...... .+|. +..++++
T Consensus       154 l~l~~n~l-------~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~-~~~l--~~~~l~l~~~~~~~~~~~~~~~~~~l  223 (313)
T d1ogqa_         154 ITFDGNRI-------SGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT-FANL--NLAFVDLSRNMLEGDASVLFGSDKNT  223 (313)
T ss_dssp             EECCSSCC-------EEECCGGGGCCCTTCCEEECCSSEEEEECCGG-GGGC--CCSEEECCSSEEEECCGGGCCTTSCC
T ss_pred             eecccccc-------cccccccccccccccccccccccccccccccc-cccc--cccccccccccccccccccccccccc
Confidence            99999987       55677778888776 67777777655432111 1111  2345666643333 3444 6788999


Q ss_pred             CeEEEcCCCCceeccccCCCCCccc-cccccccEEEecCCCCCC-ccc-cccCCCCccEEEEeccCCchhhcccCCCCCC
Q 048462          156 ETLEIDRCSLESKNDYFGDQGRTRT-YCFRNLRHLSVKTCPCMT-DLK-WIRYAPNLQFLYVSYCPRLSEIIGTYESPGT  232 (325)
Q Consensus       156 ~~L~l~~~~~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~l~-~l~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~  232 (325)
                      +.+++.++...         +.++. ..+++|+.|+++++ +++ .+| .++.+++|++|+|++|.....+         
T Consensus       224 ~~l~~~~~~l~---------~~~~~~~~~~~L~~L~Ls~N-~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~i---------  284 (313)
T d1ogqa_         224 QKIHLAKNSLA---------FDLGKVGLSKNLNGLDLRNN-RIYGTLPQGLTQLKFLHSLNVSFNNLCGEI---------  284 (313)
T ss_dssp             SEEECCSSEEC---------CBGGGCCCCTTCCEEECCSS-CCEECCCGGGGGCTTCCEEECCSSEEEEEC---------
T ss_pred             ccccccccccc---------ccccccccccccccccCccC-eecccCChHHhCCCCCCEEECcCCcccccC---------
Confidence            99999988753         22232 45789999999999 776 454 6888999999999998642222         


Q ss_pred             CccccccccCCcccEEeccCCCCcce
Q 048462          233 SEIEESQDFFSNLMVIDLRHLPSLTS  258 (325)
Q Consensus       233 ~~~~~~~~~~~~L~~L~l~~~~~l~~  258 (325)
                         | ..+.+.+|+.+++.+++.+..
T Consensus       285 ---P-~~~~L~~L~~l~l~~N~~l~g  306 (313)
T d1ogqa_         285 ---P-QGGNLQRFDVSAYANNKCLCG  306 (313)
T ss_dssp             ---C-CSTTGGGSCGGGTCSSSEEES
T ss_pred             ---C-CcccCCCCCHHHhCCCccccC
Confidence               2 346788999999999865544

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=2.5e-16  Score=131.78  Aligned_cols=192  Identities=16%  Similarity=0.128  Sum_probs=117.9

Q ss_pred             CCcEEecCCCCCCCcCchhhhCcccCceecCCCCcccccCh-hhhccccCceeeccCCCCCeeechhhhhCCCcccEEEe
Q 048462            3 ALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPT-GITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSW   81 (325)
Q Consensus         3 ~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l   81 (325)
                      .+..++-+++ .++.+|+.+.  +++++|++++|.++++|. .+.++++|++|++++|.+ +.++.  ++.+++|++|++
T Consensus        11 ~~~~v~C~~~-~L~~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l-~~l~~--~~~l~~L~~L~L   84 (266)
T d1p9ag_          11 SHLEVNCDKR-NLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL-TKLQV--DGTLPVLGTLDL   84 (266)
T ss_dssp             TCCEEECTTS-CCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCC-CEEEC--CSCCTTCCEEEC
T ss_pred             CCeEEEccCC-CCCeeCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccc-ccccc--cccccccccccc
Confidence            3456777887 7888887664  578999999999988775 478899999999999654 45665  678899999999


Q ss_pred             cccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccc--cccCCCCCeEE
Q 048462           82 FSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPL--DLRMDHLETLE  159 (325)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~--l~~l~~L~~L~  159 (325)
                      ++|.+        ...+..+..+++|+.|+++++....+....  ......++.|++++.....++.  +..+++++.++
T Consensus        85 s~N~l--------~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~--~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~  154 (266)
T d1p9ag_          85 SHNQL--------QSLPLLGQTLPALTVLDVSFNRLTSLPLGA--LRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS  154 (266)
T ss_dssp             CSSCC--------SSCCCCTTTCTTCCEEECCSSCCCCCCSST--TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred             ccccc--------cccccccccccccccccccccccceeeccc--cccccccccccccccccceeccccccccccchhcc
Confidence            99887        344556777888888888877655432211  1112234555555433333333  44455555555


Q ss_pred             EcCCCCceeccccCCCCCccccccccccEEEecCCCCCCccc-cccCCCCccEEEEeccC
Q 048462          160 IDRCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDLK-WIRYAPNLQFLYVSYCP  218 (325)
Q Consensus       160 l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~~~~~~~L~~L~l~~~~  218 (325)
                      +++|......     .+.+  ..+++|++|+++++ +++.++ .+..+++|+.|+|++|+
T Consensus       155 l~~N~l~~~~-----~~~~--~~l~~L~~L~Ls~N-~L~~lp~~~~~~~~L~~L~L~~Np  206 (266)
T d1p9ag_         155 LANNNLTELP-----AGLL--NGLENLDTLLLQEN-SLYTIPKGFFGSHLLPFAFLHGNP  206 (266)
T ss_dssp             CTTSCCSCCC-----TTTT--TTCTTCCEEECCSS-CCCCCCTTTTTTCCCSEEECCSCC
T ss_pred             cccccccccC-----cccc--ccccccceeecccC-CCcccChhHCCCCCCCEEEecCCC
Confidence            5555432111     0001  23455555555555 455543 23344555555555544

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=3.3e-16  Score=126.28  Aligned_cols=84  Identities=20%  Similarity=0.327  Sum_probs=62.4

Q ss_pred             hCcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEecccceeeeeeccCccchhhhc
Q 048462           23 GKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLAELE  102 (325)
Q Consensus        23 ~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~  102 (325)
                      ..+..|++|+++++.++.++ ++.++++|++|++++|.+ ..++.  ++.+++|+.|++++|.+       . . ...+.
T Consensus        43 ~~L~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~L~~n~i-~~l~~--~~~l~~L~~L~l~~n~i-------~-~-l~~l~  109 (210)
T d1h6ta2          43 NELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKL-TDIKP--LANLKNLGWLFLDENKV-------K-D-LSSLK  109 (210)
T ss_dssp             HHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCC-CCCGG--GTTCTTCCEEECCSSCC-------C-C-GGGGT
T ss_pred             HHhcCccEEECcCCCCCCch-hHhhCCCCCEEeCCCccc-cCccc--cccCccccccccccccc-------c-c-ccccc
Confidence            35678888888888887765 478888899998888654 34554  67888888998888877       2 2 33577


Q ss_pred             cCCCcceEEEEecCccc
Q 048462          103 SLENIHDISVTLCNVDA  119 (325)
Q Consensus       103 ~l~~L~~L~l~~~~~~~  119 (325)
                      .+++|+.+++.++....
T Consensus       110 ~l~~L~~L~l~~~~~~~  126 (210)
T d1h6ta2         110 DLKKLKSLSLEHNGISD  126 (210)
T ss_dssp             TCTTCCEEECTTSCCCC
T ss_pred             ccccccccccccccccc
Confidence            78888888887775543

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=3.4e-16  Score=125.08  Aligned_cols=159  Identities=16%  Similarity=0.234  Sum_probs=99.7

Q ss_pred             cCCCCCCCcCchhhhCcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEecccceee
Q 048462            9 LSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWFSTELVE   88 (325)
Q Consensus         9 l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~   88 (325)
                      ++.+ .++..+ ....+.++++|+++++.++.+. ++.++++|++|++++|.+ ..++.  ++++++|++|++..|..  
T Consensus        25 l~~~-~~~~~~-~~~~l~~l~~L~l~~~~i~~l~-~l~~l~nL~~L~Ls~N~l-~~~~~--l~~l~~L~~L~l~~n~~--   96 (199)
T d2omxa2          25 LGKT-NVTDTV-SQTDLDQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQL-TDITP--LKNLTKLVDILMNNNQI--   96 (199)
T ss_dssp             TTCS-STTSEE-CHHHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCC-CCCGG--GTTCTTCCEEECCSSCC--
T ss_pred             hCCC-CCCCcc-CHHHhcCCCEEECCCCCCCCcc-ccccCCCcCcCccccccc-cCccc--ccCCccccccccccccc--
Confidence            4444 444432 2356788999999999888774 588899999999998754 44554  78899999999998876  


Q ss_pred             eeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccccccCCCCCeEEEcCCCCcee
Q 048462           89 LHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPLDLRMDHLETLEIDRCSLESK  168 (325)
Q Consensus        89 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~  168 (325)
                           .  ....+..+++|+.+++.++.......                          +..+++|+.|++++|.... 
T Consensus        97 -----~--~~~~l~~l~~L~~L~l~~~~~~~~~~--------------------------~~~l~~L~~L~l~~n~l~~-  142 (199)
T d2omxa2          97 -----A--DITPLANLTNLTGLTLFNNQITDIDP--------------------------LKNLTNLNRLELSSNTISD-  142 (199)
T ss_dssp             -----C--CCGGGTTCTTCSEEECCSSCCCCCGG--------------------------GTTCTTCSEEECCSSCCCC-
T ss_pred             -----c--cccccccccccccccccccccccccc--------------------------cchhhhhHHhhhhhhhhcc-
Confidence                 1  22347788889888887776544322                          2244455555555554321 


Q ss_pred             ccccCCCCCccccccccccEEEecCCCCCCccccccCCCCccEEEEeccC
Q 048462          169 NDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDLKWIRYAPNLQFLYVSYCP  218 (325)
Q Consensus       169 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~  218 (325)
                              .-....+++|++|++.++ ++++++.+..+++|++|++++|+
T Consensus       143 --------~~~l~~~~~L~~L~l~~n-~l~~l~~l~~l~~L~~L~ls~N~  183 (199)
T d2omxa2         143 --------ISALSGLTSLQQLNFSSN-QVTDLKPLANLTTLERLDISSNK  183 (199)
T ss_dssp             --------CGGGTTCTTCSEEECCSS-CCCCCGGGTTCTTCCEEECCSSC
T ss_pred             --------cccccccccccccccccc-cccCCccccCCCCCCEEECCCCC
Confidence                    000133455555555555 55555555555566666665553

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=1.4e-15  Score=127.10  Aligned_cols=196  Identities=18%  Similarity=0.170  Sum_probs=112.2

Q ss_pred             CcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEecccceeeeeeccCccchhhhcc
Q 048462           24 KLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLAELES  103 (325)
Q Consensus        24 ~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~  103 (325)
                      +...+...+-+++.++++|..+.  +++++|++++|.+. .++...+.++++|++|++++|.+       . . +..+..
T Consensus         8 ~~~~~~~v~C~~~~L~~iP~~lp--~~l~~L~Ls~N~i~-~l~~~~f~~l~~L~~L~L~~N~l-------~-~-l~~~~~   75 (266)
T d1p9ag_           8 KVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAEL-------T-K-LQVDGT   75 (266)
T ss_dssp             CSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCS-EEEGGGGTTCTTCCEEECTTSCC-------C-E-EECCSC
T ss_pred             ccCCCeEEEccCCCCCeeCcCcC--cCCCEEECcCCcCC-CcCHHHhhccccccccccccccc-------c-c-cccccc
Confidence            34456667888888999998764  57999999996654 45544489999999999999987       2 2 223567


Q ss_pred             CCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccccccCCCCCeEEEcCCCCceeccccCCCCCcccccc
Q 048462          104 LENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPLDLRMDHLETLEIDRCSLESKNDYFGDQGRTRTYCF  183 (325)
Q Consensus       104 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~  183 (325)
                      +++|+.|++++|........                         +..+++|+.|+++++...+...       .....+
T Consensus        76 l~~L~~L~Ls~N~l~~~~~~-------------------------~~~l~~L~~L~l~~~~~~~~~~-------~~~~~l  123 (266)
T d1p9ag_          76 LPVLGTLDLSHNQLQSLPLL-------------------------GQTLPALTVLDVSFNRLTSLPL-------GALRGL  123 (266)
T ss_dssp             CTTCCEEECCSSCCSSCCCC-------------------------TTTCTTCCEEECCSSCCCCCCS-------STTTTC
T ss_pred             cccccccccccccccccccc-------------------------cccccccccccccccccceeec-------cccccc
Confidence            88999999988876543221                         2244455555555444321100       000234


Q ss_pred             ccccEEEecCCCCCCccc--cccCCCCccEEEEeccCCchhhcccCCCCCCCccccccccCCcccEEeccCCCCcceecc
Q 048462          184 RNLRHLSVKTCPCMTDLK--WIRYAPNLQFLYVSYCPRLSEIIGTYESPGTSEIEESQDFFSNLMVIDLRHLPSLTSICC  261 (325)
Q Consensus       184 ~~L~~L~l~~~~~l~~l~--~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~  261 (325)
                      .++++|+++++ .++.++  .+..+++++.|++++|. ++.+..           ..+..+++|++|+++++ .++.++.
T Consensus       124 ~~l~~L~l~~n-~l~~l~~~~~~~l~~l~~l~l~~N~-l~~~~~-----------~~~~~l~~L~~L~Ls~N-~L~~lp~  189 (266)
T d1p9ag_         124 GELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANNN-LTELPA-----------GLLNGLENLDTLLLQEN-SLYTIPK  189 (266)
T ss_dssp             TTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSC-CSCCCT-----------TTTTTCTTCCEEECCSS-CCCCCCT
T ss_pred             ccccccccccc-ccceeccccccccccchhccccccc-ccccCc-----------cccccccccceeecccC-CCcccCh
Confidence            45555555554 444432  22334555555555543 222211           23344555555555554 3555555


Q ss_pred             CcccCCCccEEeeeCC
Q 048462          262 GVVPFPSLQTISVNGC  277 (325)
Q Consensus       262 ~~~~~~~L~~L~l~~c  277 (325)
                      ....+++|+.|+++++
T Consensus       190 ~~~~~~~L~~L~L~~N  205 (266)
T d1p9ag_         190 GFFGSHLLPFAFLHGN  205 (266)
T ss_dssp             TTTTTCCCSEEECCSC
T ss_pred             hHCCCCCCCEEEecCC
Confidence            4445555555555543

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=7.4e-17  Score=136.29  Aligned_cols=183  Identities=18%  Similarity=0.178  Sum_probs=128.5

Q ss_pred             hhCcccCceecCCCCccc--ccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEecccceeeeeeccCcc-ch
Q 048462           22 IGKLINLCYLNLSNTRIG--QLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTS-VL   98 (325)
Q Consensus        22 ~~~l~~L~~L~l~~~~l~--~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-~~   98 (325)
                      .....+|++|++++|.++  .++..+.++++|++|++++|......+.. +..+++|++|++++|..+      +.. +.
T Consensus        42 ~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~-l~~~~~L~~L~Ls~c~~i------td~~l~  114 (284)
T d2astb2          42 HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNT-LAKNSNLVRLNLSGCSGF------SEFALQ  114 (284)
T ss_dssp             CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHH-HTTCTTCSEEECTTCBSC------CHHHHH
T ss_pred             hccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHH-HhcCCCCcCccccccccc------cccccc
Confidence            345678999999988763  45566788999999999998766555565 888899999999887541      222 23


Q ss_pred             hhhccCCCcceEEEEecCcccccccc-cCccccCCceEEEEceeee-e---cccc-cccCCCCCeEEEcCCCCceecccc
Q 048462           99 AELESLENIHDISVTLCNVDAVNRVK-SSPKLQSCIKRLAVVLMAS-F---LLPL-DLRMDHLETLEIDRCSLESKNDYF  172 (325)
Q Consensus        99 ~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~-~---~l~~-l~~l~~L~~L~l~~~~~~~~~~~~  172 (325)
                      .....+++|++|++++|.......+. .....++.|+.|+++++.. +   .+.. ...+++|++|++++|..++..   
T Consensus       115 ~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~---  191 (284)
T d2astb2         115 TLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKND---  191 (284)
T ss_dssp             HHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGG---
T ss_pred             hhhHHHHhccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCch---
Confidence            33456889999999887543322221 1223345689999986532 2   3444 457899999999998765211   


Q ss_pred             CCCCCccccccccccEEEecCCCCCCc--cccccCCCCccEEEEecc
Q 048462          173 GDQGRTRTYCFRNLRHLSVKTCPCMTD--LKWIRYAPNLQFLYVSYC  217 (325)
Q Consensus       173 ~~~~~~~~~~~~~L~~L~l~~~~~l~~--l~~~~~~~~L~~L~l~~~  217 (325)
                         +......+++|++|++++|..+++  +..++.+|+|+.|++.+|
T Consensus       192 ---~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         192 ---CFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             ---GGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             ---hhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence               111115689999999999988876  346778999999999988

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=1.3e-15  Score=128.67  Aligned_cols=217  Identities=16%  Similarity=0.149  Sum_probs=139.8

Q ss_pred             EEecCCCCCCCcCchhhhCcccCceecCCCCcccccCh-hhhccccCceeeccCCCCCeeechhhhhCCCcccEEEeccc
Q 048462            6 VLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPT-GITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWFST   84 (325)
Q Consensus         6 ~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~   84 (325)
                      .++.+++ +++.+|..+.  ..+++|++++|+++++|. .+.++++|++|+++++.+....+.. +..+..++.+.....
T Consensus        15 ~v~c~~~-~L~~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~-~~~~~~~~~l~~~~~   90 (284)
T d1ozna_          15 TTSCPQQ-GLQAVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAA-FTGLALLEQLDLSDN   90 (284)
T ss_dssp             EEECCSS-CCSSCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTT-TTTCTTCCEEECCSC
T ss_pred             EEEcCCC-CCCccCCCCC--CCCCEEECcCCcCCCCCHHHhhcccccccccccccccccccccc-ccccccccccccccc
Confidence            4555665 6777776554  467888888888877765 3677888888888875544433333 666777777766543


Q ss_pred             ceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccc--cccCCCCCeEEEcC
Q 048462           85 ELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPL--DLRMDHLETLEIDR  162 (325)
Q Consensus        85 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~--l~~l~~L~~L~l~~  162 (325)
                      ..+      ....+..+..+++|+.|++.++....+...  .......|+.+++++.....++.  +..+++|+.|++++
T Consensus        91 ~~~------~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~--~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~  162 (284)
T d1ozna_          91 AQL------RSVDPATFHGLGRLHTLHLDRCGLQELGPG--LFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHG  162 (284)
T ss_dssp             TTC------CCCCTTTTTTCTTCCEEECTTSCCCCCCTT--TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             ccc------ccccchhhcccccCCEEecCCccccccccc--ccchhcccchhhhccccccccChhHhccccchhhccccc
Confidence            220      233355677778888888877765443221  22233457777777655555544  67788888888888


Q ss_pred             CCCceeccccCCCCCccccccccccEEEecCCCCCCcc--ccccCCCCccEEEEeccCCchhhcccCCCCCCCccccccc
Q 048462          163 CSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDL--KWIRYAPNLQFLYVSYCPRLSEIIGTYESPGTSEIEESQD  240 (325)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l--~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~  240 (325)
                      |......     +..+  ..+++|++++++++ +++.+  ..+..+++|++|++++|... .+.           +..++
T Consensus       163 N~l~~l~-----~~~f--~~l~~L~~l~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~i~-~~~-----------~~~~~  222 (284)
T d1ozna_         163 NRISSVP-----ERAF--RGLHSLDRLLLHQN-RVAHVHPHAFRDLGRLMTLYLFANNLS-ALP-----------TEALA  222 (284)
T ss_dssp             SCCCEEC-----TTTT--TTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCS-CCC-----------HHHHT
T ss_pred             Ccccccc-----hhhh--ccccccchhhhhhc-cccccChhHhhhhhhcccccccccccc-ccc-----------ccccc
Confidence            8753221     1122  35678888888888 66665  34667788888888887642 222           13667


Q ss_pred             cCCcccEEeccCCC
Q 048462          241 FFSNLMVIDLRHLP  254 (325)
Q Consensus       241 ~~~~L~~L~l~~~~  254 (325)
                      .+++|++|++.+++
T Consensus       223 ~~~~L~~L~l~~N~  236 (284)
T d1ozna_         223 PLRALQYLRLNDNP  236 (284)
T ss_dssp             TCTTCCEEECCSSC
T ss_pred             cccccCEEEecCCC
Confidence            78888888888753

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=3.4e-15  Score=125.93  Aligned_cols=215  Identities=16%  Similarity=0.147  Sum_probs=144.5

Q ss_pred             eecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEecccceeeeeeccCccchhhhccCCCcce
Q 048462           30 YLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLAELESLENIHD  109 (325)
Q Consensus        30 ~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~  109 (325)
                      .+..+++.++.+|..+.  .++++|++++|.+ ..+|...+.++++|++|+++++.+       .......+..+..++.
T Consensus        15 ~v~c~~~~L~~iP~~ip--~~~~~L~Ls~N~i-~~i~~~~f~~l~~L~~L~ls~n~l-------~~i~~~~~~~~~~~~~   84 (284)
T d1ozna_          15 TTSCPQQGLQAVPVGIP--AASQRIFLHGNRI-SHVPAASFRACRNLTILWLHSNVL-------ARIDAAAFTGLALLEQ   84 (284)
T ss_dssp             EEECCSSCCSSCCTTCC--TTCSEEECTTSCC-CEECTTTTTTCTTCCEEECCSSCC-------CEECTTTTTTCTTCCE
T ss_pred             EEEcCCCCCCccCCCCC--CCCCEEECcCCcC-CCCCHHHhhccccccccccccccc-------cccccccccccccccc
Confidence            34555667888887653  5789999999765 566654489999999999999987       4444555666788888


Q ss_pred             EEEEec-CcccccccccCccccCCceEEEEceeeeecccc--cccCCCCCeEEEcCCCCceeccccCCCCCccccccccc
Q 048462          110 ISVTLC-NVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPL--DLRMDHLETLEIDRCSLESKNDYFGDQGRTRTYCFRNL  186 (325)
Q Consensus       110 L~l~~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~--l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L  186 (325)
                      +.+... ....+...  ...-..+|+.|++++.....++.  +...++|+.+++.++....+.     ++.+  ..+++|
T Consensus        85 l~~~~~~~~~~l~~~--~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~-----~~~f--~~~~~L  155 (284)
T d1ozna_          85 LDLSDNAQLRSVDPA--TFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALP-----DDTF--RDLGNL  155 (284)
T ss_dssp             EECCSCTTCCCCCTT--TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-----TTTT--TTCTTC
T ss_pred             cccccccccccccch--hhcccccCCEEecCCcccccccccccchhcccchhhhccccccccC-----hhHh--ccccch
Confidence            776433 23332211  11222458888888655544333  667788888888888754221     1111  356788


Q ss_pred             cEEEecCCCCCCccc--cccCCCCccEEEEeccCCchhhcccCCCCCCCccccccccCCcccEEeccCCCCcceec-cCc
Q 048462          187 RHLSVKTCPCMTDLK--WIRYAPNLQFLYVSYCPRLSEIIGTYESPGTSEIEESQDFFSNLMVIDLRHLPSLTSIC-CGV  263 (325)
Q Consensus       187 ~~L~l~~~~~l~~l~--~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~  263 (325)
                      ++|+++++ .++.++  .+..+++|+++++.+|... .+.           +..+..+++|++|+++++ .+..++ ...
T Consensus       156 ~~L~l~~N-~l~~l~~~~f~~l~~L~~l~l~~N~l~-~i~-----------~~~f~~l~~L~~L~l~~N-~i~~~~~~~~  221 (284)
T d1ozna_         156 THLFLHGN-RISSVPERAFRGLHSLDRLLLHQNRVA-HVH-----------PHAFRDLGRLMTLYLFAN-NLSALPTEAL  221 (284)
T ss_dssp             CEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCC-EEC-----------TTTTTTCTTCCEEECCSS-CCSCCCHHHH
T ss_pred             hhcccccC-cccccchhhhccccccchhhhhhcccc-ccC-----------hhHhhhhhhccccccccc-cccccccccc
Confidence            88888888 677764  4567888888888888643 222           246777888889988887 444443 334


Q ss_pred             ccCCCccEEeeeCC
Q 048462          264 VPFPSLQTISVNGC  277 (325)
Q Consensus       264 ~~~~~L~~L~l~~c  277 (325)
                      ..+++|+.|+++++
T Consensus       222 ~~~~~L~~L~l~~N  235 (284)
T d1ozna_         222 APLRALQYLRLNDN  235 (284)
T ss_dssp             TTCTTCCEEECCSS
T ss_pred             ccccccCEEEecCC
Confidence            46788888888775

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.62  E-value=3.2e-14  Score=123.03  Aligned_cols=250  Identities=18%  Similarity=0.122  Sum_probs=152.1

Q ss_pred             CCcEEecCCCCCCCcCchhhhCcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEec
Q 048462            3 ALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWF   82 (325)
Q Consensus         3 ~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~   82 (325)
                      ++++||++++ .++.+|+.   .++|++|++++|+++++|..   +.+|+.|+++++.. ..++.  +  .++|++|+++
T Consensus        39 ~l~~LdLs~~-~L~~lp~~---~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~l~~n~l-~~l~~--l--p~~L~~L~L~  106 (353)
T d1jl5a_          39 QAHELELNNL-GLSSLPEL---PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNL-KALSD--L--PPLLEYLGVS  106 (353)
T ss_dssp             TCSEEECTTS-CCSCCCSC---CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCC-SCCCS--C--CTTCCEEECC
T ss_pred             CCCEEEeCCC-CCCCCCCC---CCCCCEEECCCCCCcccccc---hhhhhhhhhhhccc-chhhh--h--cccccccccc
Confidence            5899999999 89999963   46899999999999999875   45789999998654 33332  1  2469999999


Q ss_pred             ccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccccccCCCCCeEEEcC
Q 048462           83 STELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPLDLRMDHLETLEIDR  162 (325)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~l~~L~~L~l~~  162 (325)
                      +|.+        ..++ ....+++|+.+++.++........      ...+..+.+..........+..++.++.+.+.+
T Consensus       107 ~n~l--------~~lp-~~~~l~~L~~L~l~~~~~~~~~~~------~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~  171 (353)
T d1jl5a_         107 NNQL--------EKLP-ELQNSSFLKIIDVDNNSLKKLPDL------PPSLEFIAAGNNQLEELPELQNLPFLTAIYADN  171 (353)
T ss_dssp             SSCC--------SSCC-CCTTCTTCCEEECCSSCCSCCCCC------CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCS
T ss_pred             cccc--------cccc-chhhhccceeeccccccccccccc------cccccchhhccccccccccccccccceeccccc
Confidence            9987        2333 467789999999988876544322      223566766655555555577888999999887


Q ss_pred             CCCceeccccCC----------CCCccc-cccccccEEEecCCCCCCccccccCCCCccEEEEeccCCc-----------
Q 048462          163 CSLESKNDYFGD----------QGRTRT-YCFRNLRHLSVKTCPCMTDLKWIRYAPNLQFLYVSYCPRL-----------  220 (325)
Q Consensus       163 ~~~~~~~~~~~~----------~~~~~~-~~~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l-----------  220 (325)
                      +...........          ...++. ..++.|+.++++++ ....++.  ..+++..+.+.++...           
T Consensus       172 n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~l~l~~n-~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~l~~  248 (353)
T d1jl5a_         172 NSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNN-LLKTLPD--LPPSLEALNVRDNYLTDLPELPQSLTF  248 (353)
T ss_dssp             SCCSSCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSS-CCSSCCS--CCTTCCEEECCSSCCSCCCCCCTTCCE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccc-ccccccc--ccccccccccccccccccccccccccc
Confidence            765421110000          011222 55678889888876 3333221  1122222222222110           


Q ss_pred             -----------hhhcccCCC--CCCCccccccccCCcccEEeccCCCCcceeccCcccCCCccEEeeeCCCCCCCCCCCC
Q 048462          221 -----------SEIIGTYES--PGTSEIEESQDFFSNLMVIDLRHLPSLTSICCGVVPFPSLQTISVNGCPSLRKLPLNS  287 (325)
Q Consensus       221 -----------~~~~~~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~ip~~~  287 (325)
                                 .........  .....+......+++|++|++++| ++..++.   .+++|+.|++++| +|+.+|..+
T Consensus       249 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N-~l~~lp~---~~~~L~~L~L~~N-~L~~l~~~~  323 (353)
T d1jl5a_         249 LDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNN-KLIELPA---LPPRLERLIASFN-HLAEVPELP  323 (353)
T ss_dssp             EECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSS-CCSCCCCCC
T ss_pred             cccccccccccccccchhcccccccCccccccccCCCCCEEECCCC-ccCcccc---ccCCCCEEECCCC-cCCcccccc
Confidence                       000000000  011111222334678888888887 5666553   3577888888766 677777654

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.61  E-value=5.4e-15  Score=118.00  Aligned_cols=181  Identities=15%  Similarity=0.216  Sum_probs=125.9

Q ss_pred             cCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEecccceeeeeeccCccchhhhccCCC
Q 048462           27 NLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLAELESLEN  106 (325)
Q Consensus        27 ~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~  106 (325)
                      +.....++.+.+...+. ...+.++++|+++++.+ ..++.  +..+++|++|++++|.+       .. . ..++.+++
T Consensus        19 ~~i~~~l~~~~~~~~~~-~~~l~~l~~L~l~~~~i-~~l~~--l~~l~nL~~L~Ls~N~l-------~~-~-~~l~~l~~   85 (199)
T d2omxa2          19 EKMKTVLGKTNVTDTVS-QTDLDQVTTLQADRLGI-KSIDG--VEYLNNLTQINFSNNQL-------TD-I-TPLKNLTK   85 (199)
T ss_dssp             HHHHHHTTCSSTTSEEC-HHHHTTCCEEECTTSCC-CCCTT--GGGCTTCCEEECCSSCC-------CC-C-GGGTTCTT
T ss_pred             HHHHHHhCCCCCCCccC-HHHhcCCCEEECCCCCC-CCccc--cccCCCcCcCccccccc-------cC-c-ccccCCcc
Confidence            33344566665544332 35678889999988654 34543  78889999999999877       22 2 23778888


Q ss_pred             cceEEEEecCcccccccccCccccCCceEEEEceeeeecccccccCCCCCeEEEcCCCCceeccccCCCCCccccccccc
Q 048462          107 IHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPLDLRMDHLETLEIDRCSLESKNDYFGDQGRTRTYCFRNL  186 (325)
Q Consensus       107 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L  186 (325)
                      |+.|++.++....+                          +.+..+++|+.++++++....         ..+...+++|
T Consensus        86 L~~L~l~~n~~~~~--------------------------~~l~~l~~L~~L~l~~~~~~~---------~~~~~~l~~L  130 (199)
T d2omxa2          86 LVDILMNNNQIADI--------------------------TPLANLTNLTGLTLFNNQITD---------IDPLKNLTNL  130 (199)
T ss_dssp             CCEEECCSSCCCCC--------------------------GGGTTCTTCSEEECCSSCCCC---------CGGGTTCTTC
T ss_pred             cccccccccccccc--------------------------ccccccccccccccccccccc---------ccccchhhhh
Confidence            88888877754332                          234567788888888777642         1112467889


Q ss_pred             cEEEecCCCCCCccccccCCCCccEEEEeccCCchhhcccCCCCCCCccccccccCCcccEEeccCCCCcceeccCcccC
Q 048462          187 RHLSVKTCPCMTDLKWIRYAPNLQFLYVSYCPRLSEIIGTYESPGTSEIEESQDFFSNLMVIDLRHLPSLTSICCGVVPF  266 (325)
Q Consensus       187 ~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~  266 (325)
                      +.|+++++ .+..++.+..+++|+.|++.+|. ++++.             .++.+++|++|++++| ++++++. ...+
T Consensus       131 ~~L~l~~n-~l~~~~~l~~~~~L~~L~l~~n~-l~~l~-------------~l~~l~~L~~L~ls~N-~i~~i~~-l~~L  193 (199)
T d2omxa2         131 NRLELSSN-TISDISALSGLTSLQQLNFSSNQ-VTDLK-------------PLANLTTLERLDISSN-KVSDISV-LAKL  193 (199)
T ss_dssp             SEEECCSS-CCCCCGGGTTCTTCSEEECCSSC-CCCCG-------------GGTTCTTCCEEECCSS-CCCCCGG-GGGC
T ss_pred             HHhhhhhh-hhccccccccccccccccccccc-ccCCc-------------cccCCCCCCEEECCCC-CCCCCcc-ccCC
Confidence            99999888 68878778888899999988875 33321             4567889999999987 5777664 4567


Q ss_pred             CCccEE
Q 048462          267 PSLQTI  272 (325)
Q Consensus       267 ~~L~~L  272 (325)
                      ++|++|
T Consensus       194 ~~L~~L  199 (199)
T d2omxa2         194 TNLESL  199 (199)
T ss_dssp             TTCSEE
T ss_pred             CCCCcC
Confidence            888765

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.61  E-value=3.8e-15  Score=119.93  Aligned_cols=118  Identities=15%  Similarity=0.122  Sum_probs=68.9

Q ss_pred             eecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEecccceeeeeeccCccchhhhccCCCcce
Q 048462           30 YLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLAELESLENIHD  109 (325)
Q Consensus        30 ~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~  109 (325)
                      ...+..+.++.... ...+.+|++|++++|.+ ..++.  +..+++|++|++++|.+       ..  ...+..+++|+.
T Consensus        28 ~~~l~~~~~~~~~~-~~~L~~L~~L~l~~~~i-~~l~~--l~~l~~L~~L~L~~n~i-------~~--l~~~~~l~~L~~   94 (210)
T d1h6ta2          28 KDNLKKKSVTDAVT-QNELNSIDQIIANNSDI-KSVQG--IQYLPNVTKLFLNGNKL-------TD--IKPLANLKNLGW   94 (210)
T ss_dssp             HHHTTCSCTTSEEC-HHHHHTCCEEECTTSCC-CCCTT--GGGCTTCCEEECCSSCC-------CC--CGGGTTCTTCCE
T ss_pred             HHHhCcCccCCccC-HHHhcCccEEECcCCCC-CCchh--HhhCCCCCEEeCCCccc-------cC--ccccccCccccc
Confidence            34555555543221 24578899999988654 34443  78899999999999887       22  224677889999


Q ss_pred             EEEEecCcccccccccCccccCCceEEEEceeeeecccccccCCCCCeEEEcCCC
Q 048462          110 ISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPLDLRMDHLETLEIDRCS  164 (325)
Q Consensus       110 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~l~~L~~L~l~~~~  164 (325)
                      |++++|....++.+...    ..|+.|+++++....++.+..+++++.+++.++.
T Consensus        95 L~l~~n~i~~l~~l~~l----~~L~~L~l~~~~~~~~~~l~~l~~l~~l~~~~n~  145 (210)
T d1h6ta2          95 LFLDENKVKDLSSLKDL----KKLKSLSLEHNGISDINGLVHLPQLESLYLGNNK  145 (210)
T ss_dssp             EECCSSCCCCGGGGTTC----TTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSC
T ss_pred             ccccccccccccccccc----cccccccccccccccccccccccccccccccccc
Confidence            99988876554332211    1244444444333333334444444444444443

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=5.7e-15  Score=121.50  Aligned_cols=107  Identities=14%  Similarity=0.206  Sum_probs=84.4

Q ss_pred             cEEecCCCCCCCcCchhhhCcccCceecCCCCcccccChh-hhccccCceeeccCCCCCeeechhhhhCCCcccEEEecc
Q 048462            5 AVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTG-ITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWFS   83 (325)
Q Consensus         5 ~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~   83 (325)
                      ++++.++. .++.+|..+.  +++++|++++|.++.+|.. +.++++|++|++++|.....++...+..+++++++.+..
T Consensus        11 ~~i~c~~~-~l~~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~   87 (242)
T d1xwdc1          11 RVFLCQES-KVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   87 (242)
T ss_dssp             SEEEEESC-SCSSCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred             CEEEEeCC-CCCCcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccc
Confidence            56777777 7888887654  5899999999999888874 688999999999998887777655478899999998876


Q ss_pred             c-ceeeeeeccCccchhhhccCCCcceEEEEecCccccc
Q 048462           84 T-ELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVN  121 (325)
Q Consensus        84 ~-~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  121 (325)
                      + .+       ....+..+..+++|+.+.+.++......
T Consensus        88 ~n~l-------~~~~~~~~~~l~~L~~l~l~~~~l~~~~  119 (242)
T d1xwdc1          88 ANNL-------LYINPEAFQNLPNLQYLLISNTGIKHLP  119 (242)
T ss_dssp             CTTC-------CEECTTSEECCTTCCEEEEESCCCCSCC
T ss_pred             cccc-------cccccccccccccccccccchhhhcccc
Confidence            4 44       3445566788999999999988765543

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.58  E-value=5.6e-14  Score=121.47  Aligned_cols=249  Identities=20%  Similarity=0.159  Sum_probs=148.9

Q ss_pred             CCCcEEecCCCCCCCcCchhhhCcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEe
Q 048462            2 HALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSW   81 (325)
Q Consensus         2 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l   81 (325)
                      ++|++|++++| .++.+|+.+   .+|+.|++.++.++.++..   .++|++|++++|. ...+|.  ++.+++|++|++
T Consensus        58 ~~L~~L~Ls~N-~l~~lp~~~---~~L~~L~l~~n~l~~l~~l---p~~L~~L~L~~n~-l~~lp~--~~~l~~L~~L~l  127 (353)
T d1jl5a_          58 PHLESLVASCN-SLTELPELP---QSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQ-LEKLPE--LQNSSFLKIIDV  127 (353)
T ss_dssp             TTCSEEECCSS-CCSSCCCCC---TTCCEEECCSSCCSCCCSC---CTTCCEEECCSSC-CSSCCC--CTTCTTCCEEEC
T ss_pred             CCCCEEECCCC-CCcccccch---hhhhhhhhhhcccchhhhh---ccccccccccccc-cccccc--hhhhccceeecc
Confidence            68999999999 899998654   5788889999887766532   2469999999965 456775  678999999999


Q ss_pred             cccceeeeee-----------ccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccccc
Q 048462           82 FSTELVELHY-----------VDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPLDL  150 (325)
Q Consensus        82 ~~~~~~~~~~-----------~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~  150 (325)
                      .++.......           .........+..++.++.+.+..+.........      ...+.+...+.....++...
T Consensus       128 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~~~~~~~------~~~~~l~~~~~~~~~~~~~~  201 (353)
T d1jl5a_         128 DNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLP------LSLESIVAGNNILEELPELQ  201 (353)
T ss_dssp             CSSCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCC------TTCCEEECCSSCCSSCCCCT
T ss_pred             ccccccccccccccccchhhccccccccccccccccceeccccccccccccccc------cccccccccccccccccccc
Confidence            9876521100           000111223445666777777666544332211      11233444433334455566


Q ss_pred             cCCCCCeEEEcCCCCceeccccCC-------CCCcc--ccccccccEEEecCCC--CCCcc--------------c-ccc
Q 048462          151 RMDHLETLEIDRCSLESKNDYFGD-------QGRTR--TYCFRNLRHLSVKTCP--CMTDL--------------K-WIR  204 (325)
Q Consensus       151 ~l~~L~~L~l~~~~~~~~~~~~~~-------~~~~~--~~~~~~L~~L~l~~~~--~l~~l--------------~-~~~  204 (325)
                      .++.|+.++++++...........       ...+.  ....+.+...++..+.  .+..+              . ...
T Consensus       202 ~l~~L~~l~l~~n~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~  281 (353)
T d1jl5a_         202 NLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCD  281 (353)
T ss_dssp             TCTTCCEEECCSSCCSSCCSCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECC
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhcccccccCccccccc
Confidence            777788888777654321100000       00000  0112233333332210  11111              0 112


Q ss_pred             CCCCccEEEEeccCCchhhcccCCCCCCCccccccccCCcccEEeccCCCCcceeccCcccCCCccEEeeeCCCCCCCCC
Q 048462          205 YAPNLQFLYVSYCPRLSEIIGTYESPGTSEIEESQDFFSNLMVIDLRHLPSLTSICCGVVPFPSLQTISVNGCPSLRKLP  284 (325)
Q Consensus       205 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~ip  284 (325)
                      .+++|++|++++|. ++.+.               ..+++|+.|++++| ++++++.   .+++|++|++++|+ |+++|
T Consensus       282 ~~~~L~~L~Ls~N~-l~~lp---------------~~~~~L~~L~L~~N-~L~~l~~---~~~~L~~L~L~~N~-L~~lp  340 (353)
T d1jl5a_         282 LPPSLEELNVSNNK-LIELP---------------ALPPRLERLIASFN-HLAEVPE---LPQNLKQLHVEYNP-LREFP  340 (353)
T ss_dssp             CCTTCCEEECCSSC-CSCCC---------------CCCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSSC-CSSCC
T ss_pred             cCCCCCEEECCCCc-cCccc---------------cccCCCCEEECCCC-cCCcccc---ccCCCCEEECcCCc-CCCCC
Confidence            36899999999985 33332               24789999999987 6777764   35789999999984 99998


Q ss_pred             CCC
Q 048462          285 LNS  287 (325)
Q Consensus       285 ~~~  287 (325)
                      ...
T Consensus       341 ~~~  343 (353)
T d1jl5a_         341 DIP  343 (353)
T ss_dssp             CCC
T ss_pred             ccc
Confidence            654

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.44  E-value=2.4e-13  Score=99.47  Aligned_cols=105  Identities=22%  Similarity=0.287  Sum_probs=89.9

Q ss_pred             cEEecCCCCCCCcCchhhhCcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEeccc
Q 048462            5 AVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWFST   84 (325)
Q Consensus         5 ~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~   84 (325)
                      |+|++++| .++.++ .++.+++|++|++++|.++++|..+..+++|++|++++|.+ ..+|.  +..+++|++|++++|
T Consensus         1 R~L~Ls~n-~l~~l~-~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i-~~l~~--~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHK-DLTVLC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNAL-ENVDG--VANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTS-CCSSCC-CGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCC-CCCGG--GTTCSSCCEEECCSS
T ss_pred             CEEEcCCC-CCCCCc-ccccCCCCCEEECCCCccCcchhhhhhhhcccccccccccc-cccCc--cccccccCeEECCCC
Confidence            68999999 899887 48999999999999999999999999999999999999654 45664  899999999999999


Q ss_pred             ceeeeeeccCc-cchhhhccCCCcceEEEEecCccccc
Q 048462           85 ELVELHYVDST-SVLAELESLENIHDISVTLCNVDAVN  121 (325)
Q Consensus        85 ~~~~~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~  121 (325)
                      .+       .. ..+..+..+++|+.+++++|.....+
T Consensus        76 ~i-------~~~~~~~~l~~~~~L~~L~l~~N~i~~~~  106 (124)
T d1dcea3          76 RL-------QQSAAIQPLVSCPRLVLLNLQGNSLCQEE  106 (124)
T ss_dssp             CC-------CSSSTTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred             cc-------CCCCCchhhcCCCCCCEEECCCCcCCcCc
Confidence            88       22 23456888999999999998766543

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=9.9e-13  Score=107.78  Aligned_cols=201  Identities=13%  Similarity=0.131  Sum_probs=122.5

Q ss_pred             CCCcEEecCCCCCCCcCch-hhhCcccCceecCCCCccc-ccCh-hhhccccCceeeccCCCCCeeechhhhhCCCcccE
Q 048462            2 HALAVLDLSYNLDLVKLPE-AIGKLINLCYLNLSNTRIG-QLPT-GITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQV   78 (325)
Q Consensus         2 ~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~l~-~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~   78 (325)
                      +++++|++++| .++.+|. .|.++++|++|++++|.+. .++. .+.++++++++.+..++.....+...+..+++|++
T Consensus        29 ~~l~~L~Ls~n-~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~  107 (242)
T d1xwdc1          29 RNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY  107 (242)
T ss_dssp             SCCSEEEEESC-CCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCE
T ss_pred             CCCCEEECcCC-cCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccc
Confidence            47999999999 8998875 5899999999999999774 4443 46789999999987765555555444889999999


Q ss_pred             EEecccceeeeeeccCcc-chhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccccccC-CCCC
Q 048462           79 FSWFSTELVELHYVDSTS-VLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPLDLRM-DHLE  156 (325)
Q Consensus        79 L~l~~~~~~~~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~l-~~L~  156 (325)
                      +++.++.+       ... ....+..++.+..+...++....+..                        ..+..+ ..++
T Consensus       108 l~l~~~~l-------~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~------------------------~~~~~~~~~l~  156 (242)
T d1xwdc1         108 LLISNTGI-------KHLPDVHKIHSLQKVLLDIQDNINIHTIER------------------------NSFVGLSFESV  156 (242)
T ss_dssp             EEEESCCC-------CSCCCCTTTCBSSCEEEEEESCTTCCEECT------------------------TSSTTSBSSCE
T ss_pred             cccchhhh-------cccccccccccccccccccccccccccccc------------------------cccccccccce
Confidence            99999977       211 12222333333333333322222111                        111222 2556


Q ss_pred             eEEEcCCCCceeccccCCCCCccccccccccEEEecCCCCCCcccc--ccCCCCccEEEEeccCCchhhcccCCCCCCCc
Q 048462          157 TLEIDRCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDLKW--IRYAPNLQFLYVSYCPRLSEIIGTYESPGTSE  234 (325)
Q Consensus       157 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~  234 (325)
                      .+++.++...+...     ..   ....++.++....+.++++++.  +.++++|++|++++|. ++.+..         
T Consensus       157 ~L~l~~n~l~~i~~-----~~---~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~-l~~l~~---------  218 (242)
T d1xwdc1         157 ILWLNKNGIQEIHN-----CA---FNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR-IHSLPS---------  218 (242)
T ss_dssp             EEECCSSCCCEECT-----TT---TTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSC-CCCCCS---------
T ss_pred             eeeccccccccccc-----cc---ccchhhhccccccccccccccHHHhcCCCCCCEEECCCCc-CCccCH---------
Confidence            66666655432111     11   1234555554434436777653  5677888888888875 444432         


Q ss_pred             cccccccCCcccEEeccCCC
Q 048462          235 IEESQDFFSNLMVIDLRHLP  254 (325)
Q Consensus       235 ~~~~~~~~~~L~~L~l~~~~  254 (325)
                        ..+..+++|+.+++.++.
T Consensus       219 --~~~~~l~~L~~l~~~~l~  236 (242)
T d1xwdc1         219 --YGLENLKKLRARSTYNLK  236 (242)
T ss_dssp             --SSCTTCCEEESSSEESSS
T ss_pred             --HHHcCCcccccCcCCCCC
Confidence              244556666666655543

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=4.8e-13  Score=102.63  Aligned_cols=109  Identities=19%  Similarity=0.178  Sum_probs=81.1

Q ss_pred             CCCcEEecCCCCCCCcCchhhhCcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEe
Q 048462            2 HALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSW   81 (325)
Q Consensus         2 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l   81 (325)
                      ..+|.|+|++| .++.++..+..+++|++|++++|.++.++ ++..+++|++|++++|.+. .++...+..+++|++|++
T Consensus        18 ~~lr~L~L~~n-~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~-~~~~l~~L~~L~ls~N~i~-~l~~~~~~~l~~L~~L~L   94 (162)
T d1a9na_          18 VRDRELDLRGY-KIPVIENLGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDLTELIL   94 (162)
T ss_dssp             TSCEEEECTTS-CCCSCCCGGGGTTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCSSCCC-EECSCHHHHCTTCCEEEC
T ss_pred             CcCcEEECCCC-CCCccCccccccccCCEEECCCCCCCccC-CcccCcchhhhhccccccc-CCCcccccccccccccee
Confidence            46788888888 78888766677888888888888888774 4778888888888886644 454432567888888888


Q ss_pred             cccceeeeeeccCc-cchhhhccCCCcceEEEEecCcccc
Q 048462           82 FSTELVELHYVDST-SVLAELESLENIHDISVTLCNVDAV  120 (325)
Q Consensus        82 ~~~~~~~~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~  120 (325)
                      ++|.+       .. .....+..+++|+.+++.+|.....
T Consensus        95 ~~N~i-------~~~~~l~~l~~l~~L~~L~l~~N~i~~~  127 (162)
T d1a9na_          95 TNNSL-------VELGDLDPLASLKSLTYLCILRNPVTNK  127 (162)
T ss_dssp             CSCCC-------CCGGGGGGGGGCTTCCEEECCSSGGGGS
T ss_pred             ccccc-------cccccccccccccccchhhcCCCccccc
Confidence            88877       21 1234567788888888888865543

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=1.9e-12  Score=99.22  Aligned_cols=132  Identities=12%  Similarity=0.078  Sum_probs=94.7

Q ss_pred             hhCcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEecccceeeeeeccCccchhhh
Q 048462           22 IGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLAEL  101 (325)
Q Consensus        22 ~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l  101 (325)
                      +.++.++++|++++|+++.++.....+++|++|++++|.+ ..++.  +..+++|++|++++|.+       .......+
T Consensus        14 ~~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i-~~l~~--~~~l~~L~~L~ls~N~i-------~~l~~~~~   83 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEI-RKLDG--FPLLRRLKTLLVNNNRI-------CRIGEGLD   83 (162)
T ss_dssp             EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCC-CEECC--CCCCSSCCEEECCSSCC-------CEECSCHH
T ss_pred             ccCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCC-CccCC--cccCcchhhhhcccccc-------cCCCcccc
Confidence            5677889999999999999987667899999999999765 45654  88999999999999998       33223345


Q ss_pred             ccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccccccCCCCCeEEEcCCCCceeccccCCCCCcc--
Q 048462          102 ESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPLDLRMDHLETLEIDRCSLESKNDYFGDQGRTR--  179 (325)
Q Consensus       102 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~--  179 (325)
                      ..+++|++|++++|....+..+                       ..+..+++|+++++++|+..+.      +++.+  
T Consensus        84 ~~l~~L~~L~L~~N~i~~~~~l-----------------------~~l~~l~~L~~L~l~~N~i~~~------~~~r~~~  134 (162)
T d1a9na_          84 QALPDLTELILTNNSLVELGDL-----------------------DPLASLKSLTYLCILRNPVTNK------KHYRLYV  134 (162)
T ss_dssp             HHCTTCCEEECCSCCCCCGGGG-----------------------GGGGGCTTCCEEECCSSGGGGS------TTHHHHH
T ss_pred             ccccccccceeccccccccccc-----------------------cccccccccchhhcCCCccccc------cchHHHH
Confidence            6789999999999876654332                       2234667777777777765321      11101  


Q ss_pred             ccccccccEEEec
Q 048462          180 TYCFRNLRHLSVK  192 (325)
Q Consensus       180 ~~~~~~L~~L~l~  192 (325)
                      ...+|+|++|+..
T Consensus       135 i~~lp~L~~LD~~  147 (162)
T d1a9na_         135 IYKVPQVRVLDFQ  147 (162)
T ss_dssp             HHHCTTCSEETTE
T ss_pred             HHHCCCcCeeCCC
Confidence            1456777777543

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.21  E-value=2.1e-11  Score=88.81  Aligned_cols=103  Identities=17%  Similarity=0.200  Sum_probs=82.8

Q ss_pred             ceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEecccceeeeeeccCccchhhhccCCCcc
Q 048462           29 CYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLAELESLENIH  108 (325)
Q Consensus        29 ~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~  108 (325)
                      |+|++++|+++.++. +.++++|++|++++|.+ ..+|.. ++.+++|+.|++++|.+       . .. ..+..+++|+
T Consensus         1 R~L~Ls~n~l~~l~~-l~~l~~L~~L~ls~N~l-~~lp~~-~~~l~~L~~L~l~~N~i-------~-~l-~~~~~l~~L~   68 (124)
T d1dcea3           1 RVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRL-RALPPA-LAALRCLEVLQASDNAL-------E-NV-DGVANLPRLQ   68 (124)
T ss_dssp             SEEECTTSCCSSCCC-GGGGTTCCEEECCSSCC-CCCCGG-GGGCTTCCEEECCSSCC-------C-CC-GGGTTCSSCC
T ss_pred             CEEEcCCCCCCCCcc-cccCCCCCEEECCCCcc-Ccchhh-hhhhhcccccccccccc-------c-cc-CccccccccC
Confidence            689999999998874 89999999999999654 578877 89999999999999988       2 22 4688999999


Q ss_pred             eEEEEecCcccccccccCccccCCceEEEEceeeeecccccccCCCCCeEEEcCCCCc
Q 048462          109 DISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPLDLRMDHLETLEIDRCSLE  166 (325)
Q Consensus       109 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~l~~L~~L~l~~~~~~  166 (325)
                      ++++++|.+..++..                       ..+..+++|+.+++++|+..
T Consensus        69 ~L~l~~N~i~~~~~~-----------------------~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          69 ELLLCNNRLQQSAAI-----------------------QPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             EEECCSSCCCSSSTT-----------------------GGGGGCTTCCEEECTTSGGG
T ss_pred             eEECCCCccCCCCCc-----------------------hhhcCCCCCCEEECCCCcCC
Confidence            999999877654322                       22446788888888888764

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.21  E-value=2.8e-11  Score=95.36  Aligned_cols=128  Identities=14%  Similarity=0.151  Sum_probs=94.3

Q ss_pred             CcEEecCCCCCCCcCchhhhCcccCceecCCCCcccc-c-ChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEe
Q 048462            4 LAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQ-L-PTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSW   81 (325)
Q Consensus         4 L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~-l-p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l   81 (325)
                      .+.++.+++ .++.+|..+.  .++++|++++|.++. + +..+.++++|++|++++|.+....+.. +..+++|++|++
T Consensus        10 ~~~v~Cs~~-~L~~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~-~~~~~~L~~L~L   85 (192)
T d1w8aa_          10 GTTVDCTGR-GLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNA-FEGASHIQELQL   85 (192)
T ss_dssp             TTEEECTTS-CCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTT-TTTCTTCCEEEC
T ss_pred             CCEEEEeCC-CcCccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccc-cccccccceeee
Confidence            457888888 7888887664  688999999998853 4 334678999999999887666555555 888899999999


Q ss_pred             cccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccccccCCCCCeEEEc
Q 048462           82 FSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPLDLRMDHLETLEID  161 (325)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~l~~L~~L~l~  161 (325)
                      ++|.+       ....+..+..+++|++|++++|.+..++..                        .+..+++|++++++
T Consensus        86 s~N~l-------~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~------------------------~f~~l~~L~~l~L~  134 (192)
T d1w8aa_          86 GENKI-------KEISNKMFLGLHQLKTLNLYDNQISCVMPG------------------------SFEHLNSLTSLNLA  134 (192)
T ss_dssp             CSCCC-------CEECSSSSTTCTTCCEEECCSSCCCEECTT------------------------SSTTCTTCCEEECT
T ss_pred             ccccc-------cccCHHHHhCCCcccccccCCccccccCHH------------------------HhcCCccccccccc
Confidence            99887       444455677888888888888876654221                        14466778888888


Q ss_pred             CCCCc
Q 048462          162 RCSLE  166 (325)
Q Consensus       162 ~~~~~  166 (325)
                      +|...
T Consensus       135 ~N~~~  139 (192)
T d1w8aa_         135 SNPFN  139 (192)
T ss_dssp             TCCBC
T ss_pred             ccccc
Confidence            77653

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.10  E-value=8.9e-11  Score=92.43  Aligned_cols=109  Identities=15%  Similarity=0.242  Sum_probs=89.4

Q ss_pred             CCCcEEecCCCCCCCc-C-chhhhCcccCceecCCCCcccccC-hhhhccccCceeeccCCCCCeeechhhhhCCCcccE
Q 048462            2 HALAVLDLSYNLDLVK-L-PEAIGKLINLCYLNLSNTRIGQLP-TGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQV   78 (325)
Q Consensus         2 ~~L~~L~l~~~~~~~~-l-p~~~~~l~~L~~L~l~~~~l~~lp-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~   78 (325)
                      +++++|+|++| .++. + +..+..+++|++|++++|.+..++ ..+..+++|++|++++|.+. .++..++.++++|++
T Consensus        29 ~~l~~L~Ls~N-~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~-~l~~~~F~~l~~L~~  106 (192)
T d1w8aa_          29 LHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK-EISNKMFLGLHQLKT  106 (192)
T ss_dssp             TTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCC-EECSSSSTTCTTCCE
T ss_pred             CCCCEEEeCCC-CCcccccccccCCCceEeeeeccccccccccccccccccccceeeecccccc-ccCHHHHhCCCcccc
Confidence            47899999999 7864 4 456789999999999999986554 45788999999999997554 555444899999999


Q ss_pred             EEecccceeeeeeccCccchhhhccCCCcceEEEEecCccc
Q 048462           79 FSWFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDA  119 (325)
Q Consensus        79 L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  119 (325)
                      |++++|.+       ....+..+..+++|+++++++|....
T Consensus       107 L~L~~N~l-------~~i~~~~f~~l~~L~~l~L~~N~~~~  140 (192)
T d1w8aa_         107 LNLYDNQI-------SCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             EECCSSCC-------CEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             cccCCccc-------cccCHHHhcCCccccccccccccccc
Confidence            99999998       45556668889999999998887553

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.09  E-value=2.3e-12  Score=102.17  Aligned_cols=127  Identities=17%  Similarity=0.178  Sum_probs=79.1

Q ss_pred             cEEecCCC-CCCCcCchhhhCcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEecc
Q 048462            5 AVLDLSYN-LDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWFS   83 (325)
Q Consensus         5 ~~L~l~~~-~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~   83 (325)
                      +.+++++. ..++.++..++.+++|++|++++|.++.++ .+..+++|++|++++|.+ ..++.. ...+++|+.|++.+
T Consensus        26 ~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N~i-~~i~~~-~~~~~~L~~L~l~~  102 (198)
T d1m9la_          26 EKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLI-KKIENL-DAVADTLEELWISY  102 (198)
T ss_dssp             SCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEEESCCC-CHHHHTTCCEEECCEEEE-CSCSSH-HHHHHHCCEEECSE
T ss_pred             ceeeeecccCchhhhhhHHhcccccceeECcccCCCCcc-cccCCccccChhhccccc-cccccc-cccccccccccccc
Confidence            34445443 135566667777777777777777777664 477777777777777543 345543 44456677777777


Q ss_pred             cceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccccccCCCCCeEEEcCC
Q 048462           84 TELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPLDLRMDHLETLEIDRC  163 (325)
Q Consensus        84 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~l~~L~~L~l~~~  163 (325)
                      |.+       .  .+..+..+++|+.|++++|.+..+..                       +..+..+++|+.|++++|
T Consensus       103 N~i-------~--~l~~~~~l~~L~~L~L~~N~i~~~~~-----------------------~~~l~~l~~L~~L~L~~N  150 (198)
T d1m9la_         103 NQI-------A--SLSGIEKLVNLRVLYMSNNKITNWGE-----------------------IDKLAALDKLEDLLLAGN  150 (198)
T ss_dssp             EEC-------C--CHHHHHHHHHSSEEEESEEECCCHHH-----------------------HHHHTTTTTCSEEEECSS
T ss_pred             ccc-------c--ccccccccccccccccccchhccccc-----------------------cccccCCCccceeecCCC
Confidence            766       2  12446666677777776665443321                       122457778888888887


Q ss_pred             CCc
Q 048462          164 SLE  166 (325)
Q Consensus       164 ~~~  166 (325)
                      +..
T Consensus       151 ~l~  153 (198)
T d1m9la_         151 PLY  153 (198)
T ss_dssp             HHH
T ss_pred             ccc
Confidence            653

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.09  E-value=2.7e-11  Score=104.46  Aligned_cols=239  Identities=12%  Similarity=0.084  Sum_probs=142.7

Q ss_pred             cCchhhhCcccCceecCCCCccc-----ccChhhhccccCceeeccCCCCCe----------eechhhhhCCCcccEEEe
Q 048462           17 KLPEAIGKLINLCYLNLSNTRIG-----QLPTGITYLKNLKILRLDGMRYLA----------FVPCQVISSLSSLQVFSW   81 (325)
Q Consensus        17 ~lp~~~~~l~~L~~L~l~~~~l~-----~lp~~l~~l~~L~~L~l~~~~~~~----------~~~~~~~~~l~~L~~L~l   81 (325)
                      .+...+.....|+.|++++|.++     .+...+...++|+.++++++....          .+... +..+++|++|++
T Consensus        22 ~l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~-l~~~~~L~~L~L  100 (344)
T d2ca6a1          22 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQA-LLKCPKLHTVRL  100 (344)
T ss_dssp             TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHH-HTTCTTCCEEEC
T ss_pred             HHHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHH-HhhCCCcccccc
Confidence            44555667788888888888662     344456677888888887653221          11222 556788888888


Q ss_pred             cccceeeeeeccCcc----chhhhccCCCcceEEEEecCccccc--c----ccc-----CccccCCceEEEEceeeee--
Q 048462           82 FSTELVELHYVDSTS----VLAELESLENIHDISVTLCNVDAVN--R----VKS-----SPKLQSCIKRLAVVLMASF--  144 (325)
Q Consensus        82 ~~~~~~~~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~--~----~~~-----~~~~~~~L~~L~l~~~~~~--  144 (325)
                      +.|.+       ...    +...+..+++|++|++.+|......  .    +..     .......++.+.+++....  
T Consensus       101 ~~n~i-------~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~  173 (344)
T d2ca6a1         101 SDNAF-------GPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENG  173 (344)
T ss_dssp             CSCCC-------CTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGG
T ss_pred             ccccc-------ccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeeccccccccc
Confidence            88876       222    3444556788888888877643210  0    000     0011234677777643221  


Q ss_pred             ---cccc-cccCCCCCeEEEcCCCCceeccccCCCCCcc--ccccccccEEEecCCCCCCcc------ccccCCCCccEE
Q 048462          145 ---LLPL-DLRMDHLETLEIDRCSLESKNDYFGDQGRTR--TYCFRNLRHLSVKTCPCMTDL------KWIRYAPNLQFL  212 (325)
Q Consensus       145 ---~l~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~l------~~~~~~~~L~~L  212 (325)
                         .+.. +..++.|+.|++++|...+..+    ...+.  ...+++|+.|+++++ .+++.      ..+..+++|++|
T Consensus       174 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~----~~~l~~~l~~~~~L~~L~Ls~N-~i~~~g~~~L~~~l~~~~~L~~L  248 (344)
T d2ca6a1         174 SMKEWAKTFQSHRLLHTVKMVQNGIRPEGI----EHLLLEGLAYCQELKVLDLQDN-TFTHLGSSALAIALKSWPNLREL  248 (344)
T ss_dssp             GHHHHHHHHHHCTTCCEEECCSSCCCHHHH----HHHHHTTGGGCTTCCEEECCSS-CCHHHHHHHHHHHGGGCTTCCEE
T ss_pred             ccccccchhhhhhhhccccccccccccccc----ccchhhhhcchhhhcccccccc-cccccccccccccccccccchhh
Confidence               1222 5567899999999887542111    00111  145788999999988 56542      345678999999


Q ss_pred             EEeccCCchhhcccCCCCCCCccccccc--cCCcccEEeccCCCCcce-----eccCc-ccCCCccEEeeeCC
Q 048462          213 YVSYCPRLSEIIGTYESPGTSEIEESQD--FFSNLMVIDLRHLPSLTS-----ICCGV-VPFPSLQTISVNGC  277 (325)
Q Consensus       213 ~l~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~l~~-----~~~~~-~~~~~L~~L~l~~c  277 (325)
                      ++++|..-+....        .+...+.  ..+.|+.|++++|. +..     +.... ..++.|+.|+++++
T Consensus       249 ~Ls~n~i~~~g~~--------~l~~~l~~~~~~~L~~L~ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~l~~N  312 (344)
T d2ca6a1         249 GLNDCLLSARGAA--------AVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGN  312 (344)
T ss_dssp             ECTTCCCCHHHHH--------HHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTS
T ss_pred             hhhcCccCchhhH--------HHHHHhhhccCCCCCEEECCCCc-CChHHHHHHHHHHHccCCCCCEEECCCC
Confidence            9999874322111        1111222  34679999999874 432     22222 24688999999876

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=1.3e-11  Score=110.09  Aligned_cols=84  Identities=19%  Similarity=0.245  Sum_probs=57.7

Q ss_pred             CCCCcEEecCCCCCCC-----cCchhhhCcccCceecCCCCcccc-----cChhhh-ccccCceeeccCCCCCee----e
Q 048462            1 MHALAVLDLSYNLDLV-----KLPEAIGKLINLCYLNLSNTRIGQ-----LPTGIT-YLKNLKILRLDGMRYLAF----V   65 (325)
Q Consensus         1 ~~~L~~L~l~~~~~~~-----~lp~~~~~l~~L~~L~l~~~~l~~-----lp~~l~-~l~~L~~L~l~~~~~~~~----~   65 (325)
                      ++++++|+|++| .++     .++..+..+++|++|++++|.++.     +...+. ...+|++|++++|.....    +
T Consensus        26 l~~l~~L~L~~~-~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l  104 (460)
T d1z7xw1          26 LQQCQVVRLDDC-GLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVL  104 (460)
T ss_dssp             HTTCSEEEEESS-CCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             CCCCCEEEeCCC-CCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCccccccccc
Confidence            367888888888 666     334556778889999998887741     222222 235788999988764332    2


Q ss_pred             chhhhhCCCcccEEEecccce
Q 048462           66 PCQVISSLSSLQVFSWFSTEL   86 (325)
Q Consensus        66 ~~~~~~~l~~L~~L~l~~~~~   86 (325)
                      +.. +..+++|++|++++|.+
T Consensus       105 ~~~-l~~~~~L~~L~L~~N~i  124 (460)
T d1z7xw1         105 SST-LRTLPTLQELHLSDNLL  124 (460)
T ss_dssp             HHH-TTSCTTCCEEECCSSBC
T ss_pred             cch-hhccccccccccccccc
Confidence            334 67788899999888765

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.04  E-value=6.7e-12  Score=99.45  Aligned_cols=107  Identities=20%  Similarity=0.234  Sum_probs=89.5

Q ss_pred             CCCCcEEecCCCCCCCcCchhhhCcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEE
Q 048462            1 MHALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFS   80 (325)
Q Consensus         1 ~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~   80 (325)
                      +++|++|++++| .++.++ .+..+++|++|++++|.++.+|.....+++|++|++++|.+ ..++.  +..+++|+.|+
T Consensus        47 L~~L~~L~Ls~n-~I~~i~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i-~~l~~--~~~l~~L~~L~  121 (198)
T d1m9la_          47 LKACKHLALSTN-NIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQI-ASLSG--IEKLVNLRVLY  121 (198)
T ss_dssp             TTTCCEEECSEE-EESCCC-CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEEC-CCHHH--HHHHHHSSEEE
T ss_pred             ccccceeECccc-CCCCcc-cccCCccccChhhcccccccccccccccccccccccccccc-ccccc--ccccccccccc
Confidence            578999999999 899886 58999999999999999999987667788999999999754 44543  88899999999


Q ss_pred             ecccceeeeeeccCcc-chhhhccCCCcceEEEEecCccc
Q 048462           81 WFSTELVELHYVDSTS-VLAELESLENIHDISVTLCNVDA  119 (325)
Q Consensus        81 l~~~~~~~~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~  119 (325)
                      +++|.+       ... ....+..+++|+.|++.+|....
T Consensus       122 L~~N~i-------~~~~~~~~l~~l~~L~~L~L~~N~l~~  154 (198)
T d1m9la_         122 MSNNKI-------TNWGEIDKLAALDKLEDLLLAGNPLYN  154 (198)
T ss_dssp             ESEEEC-------CCHHHHHHHTTTTTCSEEEECSSHHHH
T ss_pred             cccchh-------ccccccccccCCCccceeecCCCcccc
Confidence            999987       222 23568899999999999987544

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.97  E-value=4.9e-11  Score=102.74  Aligned_cols=235  Identities=14%  Similarity=0.125  Sum_probs=145.5

Q ss_pred             CCCcEEecCCCCCCCc-----CchhhhCcccCceecCCCCccc----c-------cChhhhccccCceeeccCCCCCee-
Q 048462            2 HALAVLDLSYNLDLVK-----LPEAIGKLINLCYLNLSNTRIG----Q-------LPTGITYLKNLKILRLDGMRYLAF-   64 (325)
Q Consensus         2 ~~L~~L~l~~~~~~~~-----lp~~~~~l~~L~~L~l~~~~l~----~-------lp~~l~~l~~L~~L~l~~~~~~~~-   64 (325)
                      ..|+.|+|++| .++.     +...+...++|+.++++++...    .       +...+..+++|+.|++++|.+... 
T Consensus        31 ~~l~~L~Ls~n-~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~  109 (344)
T d2ca6a1          31 DSVKEIVLSGN-TIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA  109 (344)
T ss_dssp             SCCCEEECTTS-EECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred             CCCCEEECcCC-cCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccccccccc
Confidence            56889999998 6652     3445667789999999876432    1       223356788999999998765432 


Q ss_pred             ---echhhhhCCCcccEEEecccceeeeeeccCccchhh---------hccCCCcceEEEEecCccc--ccccccCcccc
Q 048462           65 ---VPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLAE---------LESLENIHDISVTLCNVDA--VNRVKSSPKLQ  130 (325)
Q Consensus        65 ---~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~---------l~~l~~L~~L~l~~~~~~~--~~~~~~~~~~~  130 (325)
                         +... +..+++|++|++++|.+-..   ....+...         ....+.|+.+.+.++....  ...+.......
T Consensus       110 ~~~l~~~-l~~~~~L~~L~l~~n~l~~~---~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~  185 (344)
T d2ca6a1         110 QEPLIDF-LSKHTPLEHLYLHNNGLGPQ---AGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSH  185 (344)
T ss_dssp             HHHHHHH-HHHCTTCCEEECCSSCCHHH---HHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHC
T ss_pred             ccchhhh-hcccccchheeccccccccc---ccccccccccccccccccccCcccceeecccccccccccccccchhhhh
Confidence               3334 66788999999999876100   00001111         2345788888888776442  22222222334


Q ss_pred             CCceEEEEceeeeec------c-cccccCCCCCeEEEcCCCCceeccccCCCCCccc-cccccccEEEecCCCCCCcc--
Q 048462          131 SCIKRLAVVLMASFL------L-PLDLRMDHLETLEIDRCSLESKNDYFGDQGRTRT-YCFRNLRHLSVKTCPCMTDL--  200 (325)
Q Consensus       131 ~~L~~L~l~~~~~~~------l-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~l~~l--  200 (325)
                      ..++.|+++++....      + ..+..+++|+.|++++|...+...    ...... ..+++|++|++++| .+++-  
T Consensus       186 ~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~----~~L~~~l~~~~~L~~L~Ls~n-~i~~~g~  260 (344)
T d2ca6a1         186 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGS----SALAIALKSWPNLRELGLNDC-LLSARGA  260 (344)
T ss_dssp             TTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHH----HHHHHHGGGCTTCCEEECTTC-CCCHHHH
T ss_pred             hhhcccccccccccccccccchhhhhcchhhhccccccccccccccc----ccccccccccccchhhhhhcC-ccCchhh
Confidence            568999998654321      2 226778999999999987542111    000011 45788999999999 67652  


Q ss_pred             c----ccc--CCCCccEEEEeccCCchhhcccCCCCCCCcccccc-ccCCcccEEeccCCC
Q 048462          201 K----WIR--YAPNLQFLYVSYCPRLSEIIGTYESPGTSEIEESQ-DFFSNLMVIDLRHLP  254 (325)
Q Consensus       201 ~----~~~--~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~  254 (325)
                      .    .+.  ..+.|++|++++|.. +....       ..+...+ ...++|++|++.++.
T Consensus       261 ~~l~~~l~~~~~~~L~~L~ls~N~i-~~~~~-------~~l~~~l~~~~~~L~~L~l~~N~  313 (344)
T d2ca6a1         261 AAVVDAFSKLENIGLQTLRLQYNEI-ELDAV-------RTLKTVIDEKMPDLLFLELNGNR  313 (344)
T ss_dssp             HHHHHHHHTCSSCCCCEEECCSSCC-BHHHH-------HHHHHHHHHHCTTCCEEECTTSB
T ss_pred             HHHHHHhhhccCCCCCEEECCCCcC-ChHHH-------HHHHHHHHccCCCCCEEECCCCc
Confidence            1    222  346799999999863 32211       0111233 357889999999863

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=5.7e-09  Score=78.82  Aligned_cols=104  Identities=13%  Similarity=0.078  Sum_probs=67.7

Q ss_pred             CcEEecCCCCCCCcCchhhhCcccCceecCCCC-cccccCh-hhhccccCceeeccCCCCCeeechhhhhCCCcccEEEe
Q 048462            4 LAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNT-RIGQLPT-GITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSW   81 (325)
Q Consensus         4 L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~-~l~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l   81 (325)
                      ...++.+++ .....|..+..+++|++|++.++ .++.++. .+..+++|+.|++++|.+ ..++..++..+++|++|++
T Consensus        10 ~~~l~c~~~-~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l-~~i~~~~f~~l~~L~~L~L   87 (156)
T d2ifga3          10 SSGLRCTRD-GALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGL-RFVAPDAFHFTPRLSRLNL   87 (156)
T ss_dssp             SSCEECCSS-CCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCC-CEECTTGGGSCSCCCEEEC
T ss_pred             CCeEEecCC-CCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeecccc-CCcccccccccccccceec
Confidence            445666666 56666777777778888888655 4676654 366778888888877544 4443333777888888888


Q ss_pred             cccceeeeeeccCccchhhhccCCCcceEEEEecCc
Q 048462           82 FSTELVELHYVDSTSVLAELESLENIHDISVTLCNV  117 (325)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  117 (325)
                      ++|.+        ..++........|++|++.+|.+
T Consensus        88 s~N~l--------~~l~~~~~~~~~l~~L~L~~Np~  115 (156)
T d2ifga3          88 SFNAL--------ESLSWKTVQGLSLQELVLSGNPL  115 (156)
T ss_dssp             CSSCC--------SCCCSTTTCSCCCCEEECCSSCC
T ss_pred             cCCCC--------cccChhhhccccccccccCCCcc
Confidence            88776        23333333344577777777654

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=1.6e-08  Score=76.20  Aligned_cols=91  Identities=9%  Similarity=0.065  Sum_probs=75.8

Q ss_pred             hCcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEecccceeeeeeccCccchhhhc
Q 048462           23 GKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLAELE  102 (325)
Q Consensus        23 ~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~  102 (325)
                      +.+.....++..+..+.+.|..+..+++|++|++.+++.+..++..++.++++|+.|++++|.+       ....+..+.
T Consensus         5 C~c~~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l-------~~i~~~~f~   77 (156)
T d2ifga3           5 CCPHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGL-------RFVAPDAFH   77 (156)
T ss_dssp             SCCSSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCC-------CEECTTGGG
T ss_pred             CCcCCCCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeecccc-------CCccccccc
Confidence            3455667788888888888888999999999999887777778765589999999999999998       445567788


Q ss_pred             cCCCcceEEEEecCcccc
Q 048462          103 SLENIHDISVTLCNVDAV  120 (325)
Q Consensus       103 ~l~~L~~L~l~~~~~~~~  120 (325)
                      .+++|+.|++++|.+..+
T Consensus        78 ~l~~L~~L~Ls~N~l~~l   95 (156)
T d2ifga3          78 FTPRLSRLNLSFNALESL   95 (156)
T ss_dssp             SCSCCCEEECCSSCCSCC
T ss_pred             ccccccceeccCCCCccc
Confidence            999999999999987654

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=7.8e-10  Score=98.15  Aligned_cols=108  Identities=14%  Similarity=0.168  Sum_probs=80.9

Q ss_pred             CCCcEEecCCCCCCCcC--chhhhCcccCceecCCCCccc-----ccChhhhccccCceeeccCCCCCe----eechhhh
Q 048462            2 HALAVLDLSYNLDLVKL--PEAIGKLINLCYLNLSNTRIG-----QLPTGITYLKNLKILRLDGMRYLA----FVPCQVI   70 (325)
Q Consensus         2 ~~L~~L~l~~~~~~~~l--p~~~~~l~~L~~L~l~~~~l~-----~lp~~l~~l~~L~~L~l~~~~~~~----~~~~~~~   70 (325)
                      .+|++||++++ .++..  ...+..++++++|++++|.++     .+...+..+++|++|++++|.+..    .+... +
T Consensus         2 ~~l~~ld~~~~-~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~-l   79 (460)
T d1z7xw1           2 LDIQSLDIQCE-ELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQG-L   79 (460)
T ss_dssp             EEEEEEEEESC-CCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHT-T
T ss_pred             CCCCEEEeeCC-cCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHH-H
Confidence            36899999999 78743  566778999999999999874     455667899999999999976532    11222 2


Q ss_pred             h-CCCcccEEEecccceeeeeeccCcc----chhhhccCCCcceEEEEecCcc
Q 048462           71 S-SLSSLQVFSWFSTELVELHYVDSTS----VLAELESLENIHDISVTLCNVD  118 (325)
Q Consensus        71 ~-~l~~L~~L~l~~~~~~~~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~  118 (325)
                      . ...+|++|++++|.+       +..    +...+..+++|++|++.+|...
T Consensus        80 ~~~~~~L~~L~L~~n~i-------t~~~~~~l~~~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1          80 QTPSCKIQKLSLQNCCL-------TGAGCGVLSSTLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             CSTTCCCCEEECTTSCC-------BGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred             hcCCCCCCEEECCCCCc-------cccccccccchhhccccccccccccccch
Confidence            2 235799999999987       332    3455778899999999988643

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=1.9e-06  Score=64.94  Aligned_cols=89  Identities=21%  Similarity=0.146  Sum_probs=54.9

Q ss_pred             hhhCcccCceecCCCCccccc---ChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEecccceeeeeeccCcc-
Q 048462           21 AIGKLINLCYLNLSNTRIGQL---PTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTS-   96 (325)
Q Consensus        21 ~~~~l~~L~~L~l~~~~l~~l---p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-   96 (325)
                      ....+++|++|++++|+++.+   +..+.++++|+.|++++|.+.. ++....-...+|+.|++.+|.+...... ... 
T Consensus        60 ~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~-l~~l~~l~~~~L~~L~L~~Npl~~~~~~-~~~y  137 (162)
T d1koha1          60 IEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS-ERELDKIKGLKLEELWLDGNSLSDTFRD-QSTY  137 (162)
T ss_dssp             HHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCC-GGGHHHHTTCCCSSCCCTTSTTSSSSSS-HHHH
T ss_pred             HHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCcccc-chhhhhhhccccceeecCCCCcCcCccc-chhH
Confidence            345688899999999888654   3446778899999999865443 3331133445688888888876100000 001 


Q ss_pred             chhhhccCCCcceEE
Q 048462           97 VLAELESLENIHDIS  111 (325)
Q Consensus        97 ~~~~l~~l~~L~~L~  111 (325)
                      ....+..+|+|+.|+
T Consensus       138 ~~~i~~~~P~L~~LD  152 (162)
T d1koha1         138 ISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHHTTSTTCCEET
T ss_pred             HHHHHHHCCCCCEEC
Confidence            112355678888774

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.96  E-value=2.9e-06  Score=64.27  Aligned_cols=113  Identities=16%  Similarity=0.120  Sum_probs=63.1

Q ss_pred             CCCcEEecCCCCCCCc-----CchhhhCcccCceecCCCCccc-----ccChhhhccccCceeeccCCCCCee----ech
Q 048462            2 HALAVLDLSYNLDLVK-----LPEAIGKLINLCYLNLSNTRIG-----QLPTGITYLKNLKILRLDGMRYLAF----VPC   67 (325)
Q Consensus         2 ~~L~~L~l~~~~~~~~-----lp~~~~~l~~L~~L~l~~~~l~-----~lp~~l~~l~~L~~L~l~~~~~~~~----~~~   67 (325)
                      +.|+.|+|+++..++.     +...+...++|++|++++|.++     .+...+...+.|++|++++|.+...    +..
T Consensus        15 ~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~   94 (167)
T d1pgva_          15 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR   94 (167)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred             CCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHH
Confidence            5677888876534441     2334556677888888777663     2333455667778888877654432    222


Q ss_pred             hhhhCCCcccEEEecccceeeeeeccCccchhhhccCCCcceEEEEec
Q 048462           68 QVISSLSSLQVFSWFSTELVELHYVDSTSVLAELESLENIHDISVTLC  115 (325)
Q Consensus        68 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~  115 (325)
                      . +...++|++|+++++..-.........+...+...+.|++|++..+
T Consensus        95 a-L~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_          95 S-TLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             H-TTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             H-HHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence            3 5556677777777664300000001123444555677777766544

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.80  E-value=8.8e-07  Score=66.84  Aligned_cols=104  Identities=13%  Similarity=0.040  Sum_probs=62.9

Q ss_pred             CcEEecCCCCCCCcCchhhhCcccCceecCCCCcccccChhhhccccCceeeccCCCCCee--echhhhhCCCcccEEEe
Q 048462            4 LAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAF--VPCQVISSLSSLQVFSW   81 (325)
Q Consensus         4 L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~--~~~~~~~~l~~L~~L~l   81 (325)
                      .+.|++++....    +.+..+..+..++...+....++....++++|++|++++|.+...  ++.. +..+++|+.|++
T Consensus        24 ~~~Ldls~l~~~----~~l~~~~~~~~l~~~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~-~~~l~~L~~L~L   98 (162)
T d1koha1          24 QQALDLKGLRSD----PDLVAQNIDVVLNRRSSMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSI-VQKAPNLKILNL   98 (162)
T ss_dssp             SCCBCCCCCSSC----TTTTTTTCCCCTTSHHHHHHHHHHHHHHCTTCCCCCCCSSCCCCCSGGGTH-HHHSTTCCCCCC
T ss_pred             hCeeecccCCCC----chhhhccchhhcchhhhHhhhhHHHHHhCCCCCEeeCCCccccCCchhHHH-HhhCCccccccc
Confidence            445666655211    123334444444444333334444456799999999999765442  2344 678999999999


Q ss_pred             cccceeeeeeccCccchhhhccCCCcceEEEEecCccc
Q 048462           82 FSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDA  119 (325)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  119 (325)
                      ++|.+       ............+|+.+++.+|....
T Consensus        99 s~N~i-------~~l~~l~~l~~~~L~~L~L~~Npl~~  129 (162)
T d1koha1          99 SGNEL-------KSERELDKIKGLKLEELWLDGNSLSD  129 (162)
T ss_dssp             TTSCC-------CCGGGHHHHTTCCCSSCCCTTSTTSS
T ss_pred             ccCcc-------ccchhhhhhhccccceeecCCCCcCc
Confidence            99988       22211122234578999999887653

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.47  E-value=4e-05  Score=57.57  Aligned_cols=111  Identities=14%  Similarity=0.081  Sum_probs=61.8

Q ss_pred             CCCcEEecCCCCCCC-----cCchhhhCcccCceecCCCCccc-----ccChhhhccccCceeeccCCCCCee----ech
Q 048462            2 HALAVLDLSYNLDLV-----KLPEAIGKLINLCYLNLSNTRIG-----QLPTGITYLKNLKILRLDGMRYLAF----VPC   67 (325)
Q Consensus         2 ~~L~~L~l~~~~~~~-----~lp~~~~~l~~L~~L~l~~~~l~-----~lp~~l~~l~~L~~L~l~~~~~~~~----~~~   67 (325)
                      +.|++|+++++..++     .+...+...++|++|++++|.++     .+-..+...++++.+++++|.....    +..
T Consensus        17 ~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~   96 (166)
T d1io0a_          17 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE   96 (166)
T ss_dssp             TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred             CCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHH
Confidence            567777777653454     13344556677777777777663     2333456667777777777654332    223


Q ss_pred             hhhhCCCcccEEEeccc--ceeeeeeccCccchhhhccCCCcceEEEEecC
Q 048462           68 QVISSLSSLQVFSWFST--ELVELHYVDSTSVLAELESLENIHDISVTLCN  116 (325)
Q Consensus        68 ~~~~~l~~L~~L~l~~~--~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  116 (325)
                      . +...++|+.+++..+  .+.   ......+...+...++|++|++..+.
T Consensus        97 ~-l~~~~~L~~l~L~l~~n~i~---~~~~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          97 A-LQSNTSLIELRIDNQSQPLG---NNVEMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             G-GGGCSSCCEEECCCCSSCCC---HHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             H-HHhCccccEEeeccCCCcCc---HHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence            3 556667776666532  330   00011234445566777777765543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.83  E-value=0.00066  Score=50.68  Aligned_cols=83  Identities=16%  Similarity=0.101  Sum_probs=61.6

Q ss_pred             CCCcEEecCCCCCCC-----cCchhhhCcccCceecCCCCccc-----ccChhhhccccCceeeccCCCCCe-------e
Q 048462            2 HALAVLDLSYNLDLV-----KLPEAIGKLINLCYLNLSNTRIG-----QLPTGITYLKNLKILRLDGMRYLA-------F   64 (325)
Q Consensus         2 ~~L~~L~l~~~~~~~-----~lp~~~~~l~~L~~L~l~~~~l~-----~lp~~l~~l~~L~~L~l~~~~~~~-------~   64 (325)
                      ++|++|++++| .++     .+...+...+.|++|++++|.++     .+-.++...+.|++|+++++....       .
T Consensus        44 ~~L~~L~Ls~n-~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~  122 (167)
T d1pgva_          44 KHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMD  122 (167)
T ss_dssp             SCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHH
T ss_pred             Cccceeecccc-ccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHH
Confidence            57999999999 676     23445667789999999999874     344567888999999998864221       2


Q ss_pred             echhhhhCCCcccEEEecccce
Q 048462           65 VPCQVISSLSSLQVFSWFSTEL   86 (325)
Q Consensus        65 ~~~~~~~~l~~L~~L~l~~~~~   86 (325)
                      +... +...++|+.|++..+..
T Consensus       123 l~~~-L~~n~sL~~l~l~~~~~  143 (167)
T d1pgva_         123 MMMA-IEENESLLRVGISFASM  143 (167)
T ss_dssp             HHHH-HHHCSSCCEEECCCCCH
T ss_pred             HHHH-HHhCCCccEeeCcCCCc
Confidence            3343 66778999999877643

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=95.91  E-value=0.0045  Score=45.77  Aligned_cols=84  Identities=17%  Similarity=0.111  Sum_probs=61.0

Q ss_pred             CCCCcEEecCCCCCCCc-----CchhhhCcccCceecCCCCccc-----ccChhhhccccCceeeccC--CCCCe----e
Q 048462            1 MHALAVLDLSYNLDLVK-----LPEAIGKLINLCYLNLSNTRIG-----QLPTGITYLKNLKILRLDG--MRYLA----F   64 (325)
Q Consensus         1 ~~~L~~L~l~~~~~~~~-----lp~~~~~l~~L~~L~l~~~~l~-----~lp~~l~~l~~L~~L~l~~--~~~~~----~   64 (325)
                      +++|+.|++++| .++.     +...+...+.++.++++++.++     .+...+...++|+.++++.  +....    .
T Consensus        45 n~~L~~L~Ls~n-~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~  123 (166)
T d1io0a_          45 NTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEME  123 (166)
T ss_dssp             CCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHH
T ss_pred             CCccCeeeccCC-cccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHH
Confidence            368999999999 7762     3345667889999999999763     4455678889999877754  33322    2


Q ss_pred             echhhhhCCCcccEEEecccce
Q 048462           65 VPCQVISSLSSLQVFSWFSTEL   86 (325)
Q Consensus        65 ~~~~~~~~l~~L~~L~l~~~~~   86 (325)
                      +... +...++|++|++..+..
T Consensus       124 La~~-L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_         124 IANM-LEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HHHH-HHHCSSCCEEECCCSSH
T ss_pred             HHHH-HHhCCCcCEEeCcCCCC
Confidence            3344 67889999999987654