Citrus Sinensis ID: 048488

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------11
Protein Sequence
LGFFVFNPAYMLSSLSETVTVKSLVTLWFIPVNILVSLIIGSSLALILIKLTRTPPHLYSLVVSCCSSGNYLFLLVIAPAVCEMSNSPFGDSSACSSDGETCALLSMAL
Secondary Structure (PSIPRED)
cEEEEEHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEEccccHHHHHHHHHHHccccccccccccccccccEEEEEcccc
Secondary Structure Prediction (SSPRO)
cEEEEHcHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEEEcccccccEEEEEEEEccccccccccHHcccccHHHHHHHHcc
Coil and Loop (DISEMBL)
lgffvfnpaymlsslsETVTVKSLVTLWFIPVNILVSLIIGSSLALILIKLTRTPPHLYSLVVSCCSSGNYLFLLVIAPavcemsnspfgdssacssdgeTCALLSMAL
Flexible Loop (DISEMBL)
LGFFVFNPAYMLSSLSETVTVKSLVTLWFIPVNILVSLIIGSSLALILIKLTRTPPHLYSLVVSCCSSGNYLFLLVIAPAVCEMSNSPFGDSSACSSDGETCALLSMAL
Low Complexity Region (SEG)
LGFFVFNPAYMLSSLSETVTVKSLVTLWFIPVNilvsliigsslaliliklTRTPPHLYSLVVSCCSSGNYLFLLVIAPAVCEMSNSPFGDSSACSSDGETCALLSMAL
Disordered region (IsUnstruct)
**FFVFNPAYMLSSLSETVTVKSLVTLWFIPVNILVSLIIGSSLALILIKLTRTPPHLYSLVVSCCSSGNYLFLLVIAPAVCEM*************************
Disordered Region (DISOPRED)
LGFFVFNPAYMLSSLSETVTVKSLVTLWFIPVNILVSLIIGSSLALILIKLTRTPPHLYSLVVSCCSSGNYLFLLVIAPAVCEMSNSPFGDSSACSSDGETCALLSMAL
Disordered Region (DISEMBL)
LGFFVFNPAYMLSSLSETVTVKSLVTLWFIPVNILVSLIIGSSLALILIKLTRTPPHLYSLVVSCCSSGNYLFLLVIAPAVCEMSNS***********GETCALLSMAL
Disordered Region (DISPRO)
LGFFVFNPAYMLSSLSETVTVKSLVTLWFIPVNILVSLIIGSSLALILIKLTRTPPHLYSLVVSCCSSGNYLFLLVIAPAVCEMSNSPFGDSSACSSDGETCALLSMAL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
LGFFVFNPAYMLSSLSETVTVKSLVTLWFIPVNILVSLIIGSSLALILIKLTRTPPHLYSLVVSCCSSGNYLFLLVIAPAVCEMSNSPFGDSSACSSDGETCALLSMAL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	109
255575247	390	auxin:hydrogen symporter, putative [Rici	0.981	0.274	0.629	1e-31
224115416	388	predicted protein [Populus trichocarpa]	0.981	0.275	0.611	1e-29
118481907	405	unknown [Populus trichocarpa]	0.981	0.264	0.611	1e-29
224061559	374	predicted protein [Populus trichocarpa]	0.981	0.286	0.620	3e-29
359476971	365	PREDICTED: uncharacterized protein LOC10	0.972	0.290	0.564	1e-27
296088501	418	unnamed protein product [Vitis vinifera]	0.972	0.253	0.564	1e-27
147790593	414	hypothetical protein VITISV_002064 [Viti	0.963	0.253	0.559	7e-26
225431659	418	PREDICTED: uncharacterized transporter C	0.963	0.251	0.559	1e-25
296088502	379	unnamed protein product [Vitis vinifera]	0.963	0.277	0.559	1e-25
255571127	434	auxin:hydrogen symporter, putative [Rici	0.981	0.246	0.574	4e-25

>gi|255575247|ref|XP_002528527.1| auxin:hydrogen symporter, putative [Ricinus communis] gi|223532029|gb|EEF33839.1| auxin:hydrogen symporter, putative [Ricinus communis]

 Score =  140 bits (352), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 68/108 (62%), Positives = 87/108 (80%), Gaps = 1/108 (0%)

Query: 3   FFVFNPAYMLSSLSETVTVKSLVTLWFIPVNILVSLIIGSSLALILIKLTRTPPHLYSLV 62
           F+VF+PA ++S L ET+T  SLV+LWF+PVNIL++ IIGS+LA +LIK+T+TPPHL  LV
Sbjct: 48  FYVFSPALVVSQLGETITFSSLVSLWFMPVNILLTFIIGSALAWVLIKITKTPPHLQGLV 107

Query: 63  VSCCSSGNYL-FLLVIAPAVCEMSNSPFGDSSACSSDGETCALLSMAL 109
           + CCS+GN    LL+I PAVCE SNSPFGDS+ CS+ GE  A LSMA+
Sbjct: 108 IGCCSAGNLGNLLLIIVPAVCEESNSPFGDSTTCSTYGEAYASLSMAV 155

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224115416|ref|XP_002317029.1| predicted protein [Populus trichocarpa] gi|222860094|gb|EEE97641.1| predicted protein [Populus trichocarpa]

 Score =  133 bits (335), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 66/108 (61%), Positives = 85/108 (78%), Gaps = 1/108 (0%)

Query: 3   FFVFNPAYMLSSLSETVTVKSLVTLWFIPVNILVSLIIGSSLALILIKLTRTPPHLYSLV 62
           F++F PA ++S L ET+T +SL TLWF+PVNIL++ +IGS LA ILIK+T+TPPHL  LV
Sbjct: 48  FYLFGPALVVSQLGETITFQSLNTLWFMPVNILLTFMIGSILAWILIKITKTPPHLQGLV 107

Query: 63  VSCCSSGNYL-FLLVIAPAVCEMSNSPFGDSSACSSDGETCALLSMAL 109
           + CCS+GN    LL+I PAVC  SNSPFGDS+ CS++G T A LSMA+
Sbjct: 108 IGCCSAGNLGNLLLIIVPAVCMESNSPFGDSTICSTNGTTYASLSMAV 155

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118481907|gb|ABK92888.1| unknown [Populus trichocarpa]

 Score =  133 bits (335), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 66/108 (61%), Positives = 85/108 (78%), Gaps = 1/108 (0%)

Query: 3   FFVFNPAYMLSSLSETVTVKSLVTLWFIPVNILVSLIIGSSLALILIKLTRTPPHLYSLV 62
           F++F PA ++S L ET+T +SL TLWF+PVNIL++ +IGS LA ILIK+T+TPPHL  LV
Sbjct: 48  FYLFGPALVVSQLGETITFQSLNTLWFMPVNILLTFMIGSILAWILIKITKTPPHLQGLV 107

Query: 63  VSCCSSGNYL-FLLVIAPAVCEMSNSPFGDSSACSSDGETCALLSMAL 109
           + CCS+GN    LL+I PAVC  SNSPFGDS+ CS++G T A LSMA+
Sbjct: 108 IGCCSAGNLGNLLLIIVPAVCMESNSPFGDSTICSTNGTTYASLSMAV 155

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224061559|ref|XP_002300540.1| predicted protein [Populus trichocarpa] gi|222847798|gb|EEE85345.1| predicted protein [Populus trichocarpa]

 Score =  132 bits (331), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 67/108 (62%), Positives = 84/108 (77%), Gaps = 1/108 (0%)

Query: 3   FFVFNPAYMLSSLSETVTVKSLVTLWFIPVNILVSLIIGSSLALILIKLTRTPPHLYSLV 62
           F+VF+PA + S L+ T+T++SL +LWF+PVNIL++ IIGS LA ILIK+TRTPPHL  LV
Sbjct: 48  FYVFSPALVSSQLAGTITLQSLASLWFMPVNILLTFIIGSVLAWILIKITRTPPHLQGLV 107

Query: 63  VSCCSSGNYL-FLLVIAPAVCEMSNSPFGDSSACSSDGETCALLSMAL 109
           + CCS+GN    LL+I PAVC  SNSPFGDS+ CSS G   A LSMA+
Sbjct: 108 IGCCSAGNLGNLLLIIVPAVCNESNSPFGDSTVCSSYGMAYASLSMAV 155

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359476971|ref|XP_002263557.2| PREDICTED: uncharacterized protein LOC100249991 [Vitis vinifera]

 Score =  127 bits (318), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 61/108 (56%), Positives = 85/108 (78%), Gaps = 2/108 (1%)

Query: 3   FFVFNPAYMLSSLSETVTVKSLVTLWFIPVNILVSLIIGSSLALILIKLTRTPPHLYSLV 62
           F+VFNPA + S+L++T+T  SLVT+WF+PVNIL++ +IGS+L  +LIK+TRTP HL  LV
Sbjct: 48  FYVFNPALVSSNLAKTITFSSLVTMWFMPVNILLTFVIGSALGWVLIKITRTPQHLQGLV 107

Query: 63  VSCCSSGNYL-FLLVIAPAVCEMSNSPFGDSSACSSDGETCALLSMAL 109
           + CCS+GN    LL+I PA+CE  ++PFGDS  CS++GE  A LS+A+
Sbjct: 108 LGCCSAGNLGNLLLIIIPAICEEEDNPFGDSD-CSTNGEAYASLSLAI 154

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296088501|emb|CBI37492.3| unnamed protein product [Vitis vinifera]

 Score =  127 bits (318), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 61/108 (56%), Positives = 85/108 (78%), Gaps = 2/108 (1%)

Query: 3   FFVFNPAYMLSSLSETVTVKSLVTLWFIPVNILVSLIIGSSLALILIKLTRTPPHLYSLV 62
           F+VFNPA + S+L++T+T  SLVT+WF+PVNIL++ +IGS+L  +LIK+TRTP HL  LV
Sbjct: 48  FYVFNPALVSSNLAKTITFSSLVTMWFMPVNILLTFVIGSALGWVLIKITRTPQHLQGLV 107

Query: 63  VSCCSSGNYL-FLLVIAPAVCEMSNSPFGDSSACSSDGETCALLSMAL 109
           + CCS+GN    LL+I PA+CE  ++PFGDS  CS++GE  A LS+A+
Sbjct: 108 LGCCSAGNLGNLLLIIIPAICEEEDNPFGDSD-CSTNGEAYASLSLAI 154

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147790593|emb|CAN63214.1| hypothetical protein VITISV_002064 [Vitis vinifera]

 Score =  121 bits (303), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 61/109 (55%), Positives = 85/109 (77%), Gaps = 4/109 (3%)

Query: 3   FFVFNPAYMLSSLSETVTVKSLVTLWFIPVNILVSLIIGSSLALILIKLTRTPPHLYSLV 62
           F++F PA + S+L++TVT  SL T+WF+PVNIL++ IIGS+L  ILIK+TR P HL++L+
Sbjct: 153 FYIFYPALVASNLADTVTASSLATMWFMPVNILLTFIIGSALGWILIKITRPPQHLHALI 212

Query: 63  VSCCSSGNY--LFLLVIAPAVCEMSNSPFGDSSACSSDGETCALLSMAL 109
           + CCS+GN   LF ++I PA+CE S++PFG SS CS+DG+  A LS AL
Sbjct: 213 LGCCSAGNMGNLFFIII-PAICEESDNPFG-SSDCSTDGDAYASLSSAL 259

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225431659|ref|XP_002264606.1| PREDICTED: uncharacterized transporter C5D6.04 isoform 1 [Vitis vinifera] gi|359476983|ref|XP_003631924.1| PREDICTED: uncharacterized transporter C5D6.04 isoform 2 [Vitis vinifera]

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 61/109 (55%), Positives = 85/109 (77%), Gaps = 4/109 (3%)

Query: 3   FFVFNPAYMLSSLSETVTVKSLVTLWFIPVNILVSLIIGSSLALILIKLTRTPPHLYSLV 62
           F++F PA + S+L++TVT  SL T+WF+PVNIL++ IIGS+L  ILIK+TR P HL++L+
Sbjct: 48  FYIFYPALVASNLADTVTASSLATMWFMPVNILLTFIIGSALGWILIKITRPPQHLHALI 107

Query: 63  VSCCSSGNY--LFLLVIAPAVCEMSNSPFGDSSACSSDGETCALLSMAL 109
           + CCS+GN   LF ++I PA+CE S++PFG SS CS+DG+  A LS AL
Sbjct: 108 LGCCSAGNMGNLFFIII-PAICEESDNPFG-SSDCSTDGDAYASLSSAL 154

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296088502|emb|CBI37493.3| unnamed protein product [Vitis vinifera]

 Score =  120 bits (300), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 61/109 (55%), Positives = 85/109 (77%), Gaps = 4/109 (3%)

Query: 3   FFVFNPAYMLSSLSETVTVKSLVTLWFIPVNILVSLIIGSSLALILIKLTRTPPHLYSLV 62
           F++F PA + S+L++TVT  SL T+WF+PVNIL++ IIGS+L  ILIK+TR P HL++L+
Sbjct: 9   FYIFYPALVASNLADTVTASSLATMWFMPVNILLTFIIGSALGWILIKITRPPQHLHALI 68

Query: 63  VSCCSSGNY--LFLLVIAPAVCEMSNSPFGDSSACSSDGETCALLSMAL 109
           + CCS+GN   LF ++I PA+CE S++PFG SS CS+DG+  A LS AL
Sbjct: 69  LGCCSAGNMGNLFFIII-PAICEESDNPFG-SSDCSTDGDAYASLSSAL 115

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255571127|ref|XP_002526514.1| auxin:hydrogen symporter, putative [Ricinus communis] gi|223534189|gb|EEF35905.1| auxin:hydrogen symporter, putative [Ricinus communis]

 Score =  118 bits (296), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 62/108 (57%), Positives = 84/108 (77%), Gaps = 1/108 (0%)

Query: 3   FFVFNPAYMLSSLSETVTVKSLVTLWFIPVNILVSLIIGSSLALILIKLTRTPPHLYSLV 62
           F+VF+PA + SSL+ TVT+ SLVTLWF+PVNIL++ IIGS+L   L+K+T TP HL+  +
Sbjct: 80  FYVFSPALIGSSLANTVTLDSLVTLWFMPVNILLTFIIGSALGWALVKITHTPKHLHGTI 139

Query: 63  VSCCSS-GNYLFLLVIAPAVCEMSNSPFGDSSACSSDGETCALLSMAL 109
           +SCCS+      LL+I PA+CE +NSPFGDS+ACS+ G+  A LSMA+
Sbjct: 140 ISCCSAGNLGNLLLIILPALCEENNSPFGDSTACSAYGQAYASLSMAV 187

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	109
TAIR|locus:2011731	390	AT1G76520 "AT1G76520" [Arabido	0.981	0.274	0.379	6e-16
TAIR|locus:2011746	415	AT1G76530 "AT1G76530" [Arabido	0.963	0.253	0.386	7.4e-16
TAIR|locus:2156847	395	AT5G65980 "AT5G65980" [Arabido	1.0	0.275	0.354	2.3e-15
TAIR|locus:2053908	396	AT2G17500 [Arabidopsis thalian	0.981	0.270	0.361	3.8e-15
TAIR|locus:2185123	431	AT5G01990 "AT5G01990" [Arabido	0.908	0.229	0.3	1.6e-07
TAIR|locus:2026366	457	AT1G71090 "AT1G71090" [Arabido	0.889	0.212	0.3	5.9e-07

TAIR|locus:2011731 AT1G76520 "AT1G76520" [Arabidopsis thaliana (taxid:3702)]

 Score = 204 (76.9 bits), Expect = 6.0e-16, P = 6.0e-16
 Identities = 41/108 (37%), Positives = 61/108 (56%)

Query:     3 FFVFNPAYMLSSLSETVTVKSLVTLWFIPVNXXXXXXXXXXXXXXXXXXTRTPPHLYSLV 62
             F+VF+P+ + S L+++VT +SLV +WF+PVN                  T+ P HL  L+
Sbjct:    49 FYVFSPSLIGSRLADSVTYESLVKMWFMPVNVLLTFIIGSLLGWIVIVITKPPSHLRGLI 108

Query:    63 VSCCSSGNYLFL-LVIAPAVCEMSNSPFGDSSACSSDGETCALLSMAL 109
             + CC++GN   + L+I PAVC+    PFGD  +C   G     LSMA+
Sbjct:   109 LGCCAAGNLGNMPLIIIPAVCKEKGGPFGDPESCQKYGMGYVALSMAM 156

GO:0009672 "auxin:hydrogen symporter activity" evidence=ISS

GO:0009926 "auxin polar transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0015824 "proline transport" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

TAIR|locus:2011746 AT1G76530 "AT1G76530" [Arabidopsis thaliana (taxid:3702)]

 Score = 204 (76.9 bits), Expect = 7.4e-16, P = 7.4e-16
 Identities = 41/106 (38%), Positives = 60/106 (56%)

Query:     3 FFVFNPAYMLSSLSETVTVKSLVTLWFIPVNXXXXXXXXXXXXXXXXXXTRTPPHLYSLV 62
             F+VF+P+ + S L+++VT +SLV +WF+PVN                  T+ P  L  L+
Sbjct:    48 FYVFSPSLIGSRLADSVTYESLVKMWFMPVNVLLTFMIGSLLGWIVIVITKPPSQLRGLI 107

Query:    63 VSCCSSGNYLFL-LVIAPAVCEMSNSPFGDSSACSSDGETCALLSM 107
             +SCC+SGN   + L+I PA+C+    PFGDS +C   G     LSM
Sbjct:   108 ISCCASGNLGTMPLIIIPAICKEKGGPFGDSESCEKYGMGYVTLSM 153

GO:0009672 "auxin:hydrogen symporter activity" evidence=ISS

GO:0009926 "auxin polar transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2156847 AT5G65980 "AT5G65980" [Arabidopsis thaliana (taxid:3702)]

 Score = 199 (75.1 bits), Expect = 2.3e-15, P = 2.3e-15
 Identities = 39/110 (35%), Positives = 61/110 (55%)

Query:     1 LGFFVFNPAYMLSSLSETVTVKSLVTLWFIPVNXXXXXXXXXXXXXXXXXXTRTPPHLYS 60
             L F VF P  M ++L+ETVT++ +++ WF+P+N                      P L+ 
Sbjct:    46 LVFVVFTPCIMFANLAETVTLQDIISWWFMPINVGITFLVGGILGWLVVKLLNPKPQLHG 105

Query:    61 LVVSCCSSGNY-LFLLVIAPAVCEMSNSPFGDSSACSSDGETCALLSMAL 109
             L+++ C+SGN    +L++ PA+C+   SPFG+ S C S G + A  SMAL
Sbjct:   106 LIIATCASGNMGNLMLILVPAICDEEGSPFGNRSVCRSIGLSYASFSMAL 155

GO:0009672 "auxin:hydrogen symporter activity" evidence=ISS

GO:0009926 "auxin polar transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2053908 AT2G17500 [Arabidopsis thaliana (taxid:3702)]

 Score = 197 (74.4 bits), Expect = 3.8e-15, P = 3.8e-15
 Identities = 39/108 (36%), Positives = 63/108 (58%)

Query:     3 FFVFNPAYMLSSLSETVTVKSLVTLWFIPVNXXXXXXXXXXXXXXXXXXTRTPPHLYSLV 62
             F +F PA M ++L++TVT++ +++ WF+PVN                   + PP+L  L+
Sbjct:    48 FVLFAPALMFANLAQTVTLEDIISWWFMPVNMGLTFLIGGLLGWLVVKILKPPPYLEGLI 107

Query:    63 VSCCSSGNYLFL-LVIAPAVCEMSNSPFGDSSACSSDGETCALLSMAL 109
             V+ CS+GN   L +++ PA+C+   SPFG+ S C + G + A  SMAL
Sbjct:   108 VATCSAGNMGNLPIILVPAICDEDKSPFGNRSVCRTVGLSYASFSMAL 155

GO:0009507 "chloroplast" evidence=ISM

GO:0009672 "auxin:hydrogen symporter activity" evidence=ISS

GO:0009926 "auxin polar transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0046482 "para-aminobenzoic acid metabolic process" evidence=RCA

TAIR|locus:2185123 AT5G01990 "AT5G01990" [Arabidopsis thaliana (taxid:3702)]

 Score = 128 (50.1 bits), Expect = 1.6e-07, P = 1.6e-07
 Identities = 30/100 (30%), Positives = 45/100 (45%)

Query:     1 LGFFVFNPAYMLSSLSETVTVKSLVTLWFIPVNXXXXXXXXXXXXXXXXXXTRTPPHLYS 60
             L F +  P  + S L + VT++ ++  WFIPVN                   R P   + 
Sbjct:    67 LVFSLLLPCLIFSQLGQAVTLQKMLQWWFIPVNVVLGTISGSIIGFIVASIVRPPYPYFK 126

Query:    61 LVVSCCSSGNYLFL-LVIAPAVCEMSNSPFGDSSACSSDG 99
               +     GN   + LV+  A+C  +++PFGDS  CS DG
Sbjct:   127 FTIIQIGVGNIGNVPLVLLAALCRDTSNPFGDSEKCSIDG 166

GO:0009672 "auxin:hydrogen symporter activity" evidence=ISS

GO:0009926 "auxin polar transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2026366 AT1G71090 "AT1G71090" [Arabidopsis thaliana (taxid:3702)]

 Score = 123 (48.4 bits), Expect = 5.9e-07, P = 5.9e-07
 Identities = 30/100 (30%), Positives = 44/100 (44%)

Query:     1 LGFFVFNPAYMLSSLSETVTVKSLVTLWFIPVNXXXXXXXXXXXXXXXXXXTRTPPHLYS 60
             L F +F P  + + L E++T+ ++V  WFIPVN                   R PP    
Sbjct:    55 LVFALFLPCLIFTELGESITLDNIVQWWFIPVNVLLSAVVGSLIGYLVVLICRPPPEFNR 114

Query:    61 LVVSCCSSGNY-LFLLVIAPAVCEMSNSPFGDSSACSSDG 99
               +   + GN    LL I  +VC    +PFG +  C+S G
Sbjct:   115 FTIVMTAFGNTGNLLLAIVSSVCHTKTNPFGPN--CNSRG 152


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.134   0.416    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      109        91   0.00091  102 3  11 22  0.43    29
                                                     29  0.39    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  6
  No. of states in DFA:  549 (58 KB)
  Total size of DFA:  109 KB (2073 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  8.77u 0.13s 8.90t   Elapsed:  00:00:00
  Total cpu time:  8.77u 0.13s 8.90t   Elapsed:  00:00:00
  Start:  Sat May 11 05:00:00 2013   End:  Sat May 11 05:00:00 2013

GO:0009672 "auxin:hydrogen symporter activity" evidence=ISS

GO:0009926 "auxin polar transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	109
pfam03547	321	pfam03547, Mem_trans, Membrane transport protein	7e-07

>gnl|CDD|217608 pfam03547, Mem_trans, Membrane transport protein

 Score = 45.4 bits (108), Expect = 7e-07
 Identities = 19/81 (23%), Positives = 40/81 (49%), Gaps = 1/81 (1%)

Query: 3   FFVFNPAYMLSSLSETVTVKSLVTLWFIPVNILVSLIIGSSLALILIKLTRTPPHLYSLV 62
            +   P  + SS+S  VT++ +V  W IPV +++ + I   +  ++ K+ + P     ++
Sbjct: 38  VYFALPLLIFSSISTNVTLEMIVDFWLIPVLVVLIVAISLIIGFLVSKIFKLPLEWRGVL 97

Query: 63  VSCCSSGNYLFL-LVIAPAVC 82
           +   +  N  FL L +  A+ 
Sbjct: 98  ILTSAFPNTGFLGLPLLLALY 118

This family includes auxin efflux carrier proteins and other transporter proteins from all domains of life. Length = 321

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	109
KOG2722	408	consensus Predicted membrane protein [Function unk	100.0
PF03547	385	Mem_trans: Membrane transport protein; InterPro: I	99.65
COG0679	311	Predicted permeases [General function prediction o	98.73
TIGR00946	321	2a69 he Auxin Efflux Carrier (AEC) Family.	98.56
PRK09903	314	putative transporter YfdV; Provisional	98.23
TIGR00832	328	acr3 arsenical-resistance protein. The first prote	95.64
TIGR00841	286	bass bile acid transporter. Functionally character	94.83
COG0385	319	Predicted Na+-dependent transporter [General funct	94.53
PF13593	313	DUF4137: SBF-like CPA transporter family (DUF4137)	86.56

>KOG2722 consensus Predicted membrane protein [Function unknown]

Probab=100.00  E-value=1.6e-41  Score=275.21  Aligned_cols=109  Identities=36%  Similarity=0.831  Sum_probs=107.6

Q ss_pred             CeeeehhhHHHHHhhhcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccceeeecccCCch-hHHHHHH
Q 048488            1 LGFFVFNPAYMLSSLSETVTVKSLVTLWFIPVNILVSLIIGSSLALILIKLTRTPPHLYSLVVSCCSSGNYL-FLLVIAP   79 (109)
Q Consensus         1 ~vf~~f~PaLvFs~la~~lt~~~l~~~w~ipv~~ll~~~ig~~lg~lv~~i~~~p~~~r~~~~~~~~fgN~g-LPl~lv~   79 (109)
                      ++|++|+|||+|+|||+++|.|++.+|||||+|+++++++|.++||+++|++|+|+++|+++++||+|||+| ||+++++
T Consensus        49 Lvf~lFtPcLiFs~La~svtl~~ii~~wfiPVnv~Lt~~ig~liG~lv~~I~rppp~~~~fiia~~a~GN~gnlpL~Lv~  128 (408)
T KOG2722|consen   49 LVFYLFTPCLIFSKLAQSVTLEKIIQWWFIPVNVGLTFIIGSLIGWLVVKILRPPPQLRGFIIACCAFGNSGNLPLILVP  128 (408)
T ss_pred             eeeeeecHHHHHHHHhhhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHhheecCChhhcCeEEEEeecCCcCCcHHHHhH
Confidence            589999999999999999999999999999999999999999999999999999999999999999999999 9999999


Q ss_pred             HHhhhcCCCCCCCchhhhhhhHHHhhhccC
Q 048488           80 AVCEMSNSPFGDSSACSSDGETCALLSMAL  109 (109)
Q Consensus        80 sl~~~~~~pf~~~~~~~~~G~aYi~~~~~~  109 (109)
                      |+|+++++|||++|+|++||++|++++||+
T Consensus       129 alc~~~~~Pfg~~~~c~s~Gi~Y~sf~~~l  158 (408)
T KOG2722|consen  129 ALCDEDGIPFGNREKCASRGISYVSFSQQL  158 (408)
T ss_pred             HHhcccCCCCCChhhhhhcchhHHHHHHHh
Confidence            999999999999999999999999999985

>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea

Probab=99.65  E-value=2.5e-16  Score=125.01  Aligned_cols=84  Identities=37%  Similarity=0.536  Sum_probs=81.4

Q ss_pred             CeeeehhhHHHHHhhhcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccceeeecccCCch-hHHHHHH
Q 048488            1 LGFFVFNPAYMLSSLSETVTVKSLVTLWFIPVNILVSLIIGSSLALILIKLTRTPPHLYSLVVSCCSSGNYL-FLLVIAP   79 (109)
Q Consensus         1 ~vf~~f~PaLvFs~la~~lt~~~l~~~w~ipv~~ll~~~ig~~lg~lv~~i~~~p~~~r~~~~~~~~fgN~g-LPl~lv~   79 (109)
                      +++++++|||+|++++++.+.+++.++|++++...+.++++.+++|++.|++|.|+++|+.+..+++++|.| +|+.+++
T Consensus        36 lv~~~~lP~liF~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~lglpi~~  115 (385)
T PF03547_consen   36 LVFNVFLPALIFSSIANTDTLEDLLSLWFIPVFAFIIFILGLLLGFLLSRLFRLPKEWRGVFVLAASFGNTGFLGLPILQ  115 (385)
T ss_pred             HHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccceEEEecccCCcchhhHHHHHH
Confidence            468899999999999999999999999999999999999999999999999999999999999999999999 9999999


Q ss_pred             HHhhh
Q 048488           80 AVCEM   84 (109)
Q Consensus        80 sl~~~   84 (109)
                      +++++
T Consensus       116 ~l~g~  120 (385)
T PF03547_consen  116 ALFGE  120 (385)
T ss_pred             HHhcc
Confidence            99877

Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane

>COG0679 Predicted permeases [General function prediction only]

Probab=98.73  E-value=1.1e-08  Score=81.13  Aligned_cols=83  Identities=19%  Similarity=0.105  Sum_probs=69.6

Q ss_pred             CeeeehhhHHHHHhhhcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccceeeecccCCch-hHHHHHH
Q 048488            1 LGFFVFNPAYMLSSLSETVTVKSLVTLWFIPVNILVSLIIGSSLALILIKLTRTPPHLYSLVVSCCSSGNYL-FLLVIAP   79 (109)
Q Consensus         1 ~vf~~f~PaLvFs~la~~lt~~~l~~~w~ipv~~ll~~~ig~~lg~lv~~i~~~p~~~r~~~~~~~~fgN~g-LPl~lv~   79 (109)
                      +++++.+|||+|++++++-.-++ +++..++...+.+...+....++..|.+|.+++++.....+++|+|+| +++.+..
T Consensus        39 lv~~~~lP~LlF~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~g~lg~pi~~  117 (311)
T COG0679          39 LVVYVALPALLFNSIATADLSGL-ADLGLIVASLVATLLAFFLLALIGRFLFKLDKRETVIFALASAFPNIGFLGLPVAL  117 (311)
T ss_pred             HHHHHHhHHHHHHHHHhCCcchh-hhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHhcccchhhHHHHH
Confidence            36889999999999999954444 777778888888888888888888889999999999999999999999 9877766


Q ss_pred             HHhhh
Q 048488           80 AVCEM   84 (109)
Q Consensus        80 sl~~~   84 (109)
                      ++=+|
T Consensus       118 ~~~G~  122 (311)
T COG0679         118 SLFGE  122 (311)
T ss_pred             HHcCc
Confidence            66333

>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family

Probab=98.56  E-value=7.8e-08  Score=75.71  Aligned_cols=86  Identities=10%  Similarity=-0.044  Sum_probs=65.6

Q ss_pred             CeeeehhhHHHHHhhhcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHH-HhCCCCCCccceeeecccCCch-hHHHHH
Q 048488            1 LGFFVFNPAYMLSSLSETVTVKSLVTLWFIPVNILVSLIIGSSLALILIK-LTRTPPHLYSLVVSCCSSGNYL-FLLVIA   78 (109)
Q Consensus         1 ~vf~~f~PaLvFs~la~~lt~~~l~~~w~ipv~~ll~~~ig~~lg~lv~~-i~~~p~~~r~~~~~~~~fgN~g-LPl~lv   78 (109)
                      +++++.+||++|+++++.-..++....+...+.....+.+.++++|.+.| .+|.+++.|+....++.++|.| +-+-++
T Consensus        41 ~v~~i~lP~lif~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~GlPl~  120 (321)
T TIGR00946        41 FVINFALPLTIFHSISTTLADILQKSQSPVVLFLWGAFSGSYALIWLITKPLFKADYGKLSGFLLVSALPNTAFIGYPLL  120 (321)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHhhhccceeehHHHH
Confidence            36889999999999998633323333333334445566778899999999 8899999999999999999999 777777


Q ss_pred             HHHhhhcC
Q 048488           79 PAVCEMSN   86 (109)
Q Consensus        79 ~sl~~~~~   86 (109)
                      +++-.|++
T Consensus       121 ~~~~G~~~  128 (321)
T TIGR00946       121 LSLFGEEG  128 (321)
T ss_pred             HHHhcccc
Confidence            77766655

>PRK09903 putative transporter YfdV; Provisional

Probab=98.23  E-value=2e-06  Score=67.87  Aligned_cols=84  Identities=10%  Similarity=-0.019  Sum_probs=63.4

Q ss_pred             CeeeehhhHHHHHhhhcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHH-HhCCCCCCccceeeecccCCch-hHHHHH
Q 048488            1 LGFFVFNPAYMLSSLSETVTVKSLVTLWFIPVNILVSLIIGSSLALILIK-LTRTPPHLYSLVVSCCSSGNYL-FLLVIA   78 (109)
Q Consensus         1 ~vf~~f~PaLvFs~la~~lt~~~l~~~w~ipv~~ll~~~ig~~lg~lv~~-i~~~p~~~r~~~~~~~~fgN~g-LPl~lv   78 (109)
                      +++++.+||++|++++++ +.|+..+-|.+.+...+.+...++++|++.| ..|.+++.|+.....++++|.| +-+-++
T Consensus        39 lv~~v~lPalif~s~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~gf~G~Pl~  117 (314)
T PRK09903         39 LVLNYALPAALFVSITRA-NREMIFADTRLTLVSLVVIVGCFFFSWFGCYKFFKRTHAEAAVCALIAGSPTIGFLGFAVL  117 (314)
T ss_pred             HHHHHHHHHHHHHHHHhC-CHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhHhhhhhcCCCcccccHHHH
Confidence            368899999999999975 5566653344566677777788888888875 6677777777888888999999 555577


Q ss_pred             HHHhhhc
Q 048488           79 PAVCEMS   85 (109)
Q Consensus        79 ~sl~~~~   85 (109)
                      +++-.++
T Consensus       118 ~~~~G~~  124 (314)
T PRK09903        118 DPIYGDS  124 (314)
T ss_pred             HHHcCch
Confidence            7775554

>TIGR00832 acr3 arsenical-resistance protein

Probab=95.64  E-value=0.03  Score=45.04  Aligned_cols=48  Identities=21%  Similarity=0.221  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCCCCccceeeecccCCch--hHHHH
Q 048488           30 IPVNILVSLIIGSSLALILIKLTRTPPHLYSLVVSCCSSGNYL--FLLVI   77 (109)
Q Consensus        30 ipv~~ll~~~ig~~lg~lv~~i~~~p~~~r~~~~~~~~fgN~g--LPl~l   77 (109)
                      +-...++.+.+++.+|+.++|.+|.+++.|+-+..+++..|.+  ++++.
T Consensus       248 ~~~~v~l~~~~~~~lg~~~~r~~~l~~~~~~a~~~e~g~qN~~lai~lA~  297 (328)
T TIGR00832       248 IAIPLLIYFYIMFFLTFALAKKLGLPYSITAPAAFTGASNNFELAIAVAI  297 (328)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCcChhhhhhheehhhhhhHHHHHHHHH
Confidence            3334667889999999999999999999999999999999999  77765

The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.

>TIGR00841 bass bile acid transporter

Probab=94.83  E-value=0.072  Score=41.85  Aligned_cols=49  Identities=14%  Similarity=0.033  Sum_probs=41.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccceeeecccCCch--hHHH
Q 048488           28 WFIPVNILVSLIIGSSLALILIKLTRTPPHLYSLVVSCCSSGNYL--FLLV   76 (109)
Q Consensus        28 w~ipv~~ll~~~ig~~lg~lv~~i~~~p~~~r~~~~~~~~fgN~g--LPl~   76 (109)
                      |.+-+..++...+++.+||.++|.+|.+++.|+-+...++..|.+  ++++
T Consensus       195 ~~~~~~~~ll~~~~~~~g~~~a~~~~l~~~~~~t~~~~~g~qN~~lal~la  245 (286)
T TIGR00841       195 PLLLLVGILLPLAGFLLGYLLAKLAGLPWARCRTISIEVGMQNSQLCSTIA  245 (286)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCHhhheeeeeeeecccHHHHHHHH
Confidence            334444667789999999999999999999999999999999999  4443

Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.

>COG0385 Predicted Na+-dependent transporter [General function prediction only]

Probab=94.53  E-value=0.13  Score=41.83  Aligned_cols=50  Identities=16%  Similarity=0.032  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccceeeecccCCch--hHHHHH
Q 048488           29 FIPVNILVSLIIGSSLALILIKLTRTPPHLYSLVVSCCSSGNYL--FLLVIA   78 (109)
Q Consensus        29 ~ipv~~ll~~~ig~~lg~lv~~i~~~p~~~r~~~~~~~~fgN~g--LPl~lv   78 (109)
                      .+-+...++..+|+.+||...|.++.+++.|+-+..|++..|.|  .|++-.
T Consensus       224 ~v~~~v~~~n~lg~~~gy~~ar~~g~~~a~~iti~ie~g~qn~~lg~alA~~  275 (319)
T COG0385         224 LIFVAVILHNLLGLLLGYFGARLLGFDKADEITIAIEGGMQNLGLGAALAAA  275 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCChhheeeEEEeeccccHHHHHHHHHh
Confidence            46666778889999999999999999999999999999999998  766644

>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)

Probab=86.56  E-value=3.4  Score=33.01  Aligned_cols=48  Identities=19%  Similarity=0.106  Sum_probs=39.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCCCCccceeeecccCCch--hHHHH
Q 048488           30 IPVNILVSLIIGSSLALILIKLTRTPPHLYSLVVSCCSSGNYL--FLLVI   77 (109)
Q Consensus        30 ipv~~ll~~~ig~~lg~lv~~i~~~p~~~r~~~~~~~~fgN~g--LPl~l   77 (109)
                      +-...+....+...++|...|.+|.+++.|.-+..|++--|..  +|++-
T Consensus       228 ~~~~~~~l~~~~l~~~~~~~r~~~~~~~d~iA~~F~gs~Ksl~~gvpl~~  277 (313)
T PF13593_consen  228 IVAVSLLLLLVVLVLGWLAARLLGFSRPDRIAVLFCGSQKSLALGVPLAS  277 (313)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCChhhEEEEEEEcCcCcchhHHHHHH
Confidence            3333455667788899999999999999999999999998888  77754

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	109
3zux_A	332	Transporter, ASBTNM; transport protein, membrane p	90.57

>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*

Probab=90.57  E-value=0.15  Score=39.70  Aligned_cols=45  Identities=18%  Similarity=0.038  Sum_probs=37.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCCCccceeeecccCCch--hHHHH
Q 048488           33 NILVSLIIGSSLALILIKLTRTPPHLYSLVVSCCSSGNYL--FLLVI   77 (109)
Q Consensus        33 ~~ll~~~ig~~lg~lv~~i~~~p~~~r~~~~~~~~fgN~g--LPl~l   77 (109)
                      ..++...+++.+||.++|.+|.+++.|.-+...|+..|++  +|++.
T Consensus       233 ~~~l~~~~~~~lg~~~~r~~~~~~~~~~ti~~e~G~qNs~lai~lA~  279 (332)
T 3zux_A          233 VVVLHNGIGYLLGFFAAKWTGLPYDAQKALTIEVGMQNSGLAAALAA  279 (332)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCHhHhhhhhhhhhhccHHHHHHHHH
Confidence            3566778999999999999999999998888888889987  55543

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00