Citrus Sinensis ID: 048547

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160----
Protein Sequence
MSSCINPSTLVTSVNGFKCLPLATNKAAIRIMAKNKPVQCLVSAKYDNLTVDRRSANYQPSIWDHDFLQSLNSNYTDETYKRREEELKGKVMTTIKDVTEPLNQLELIDSLQRLGLAYHFETEIRNILHDIYNSNNDYVWRKENLYATSLEFRLLRQHGYPVSQ
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccHHHHHHHccccccccEEcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccHEcccccccccccEcccccccccccccHHHHcccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHcHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
msscinpstlvtsvngfkclplATNKAAIRIMAKnkpvqclvsakydnltvdrrsanyqpsiwdhdflqslnsnytdeTYKRREEELKGKVMTTIKDVTEPLNQLELIDSLQRLGLAYHFETEIRNILHDIYNSNNDYVWRKENLYATSLEFRLLrqhgypvsq
Flexible Loop (DISEMBL)
msscinpstlvtsvngfkCLPLATNKAAIRIMAKNKPVQCLVSAKYDNLTVDRRSanyqpsiwdhdflqslnsnyTDETYKRREEELKGKVMTTIKDVTEPLNQLELIDSLQRLGLAYHFETEIRNILHDIYNSNNDYVWRKENLYATSLEFrllrqhgypvsq
Low Complexity Region (SEG)
MSSCINPSTLVTSVNGFKCLPLATNKAAIRIMAKNKPVQCLVSAKYDNLTVDRRSANYQPSIWDHDFLQSLNSNYTDETYKRREEELKGKVMTTIKDVTEPLNQLELIDSLQRLGLAYHFETEIRNILHDIYNSNNDYVWRKENLYATSLEFRLLRQHGYPVSQ
Disordered region (IsUnstruct)
*******STLVTSVNGFKCLPLATNKAAIRIMAKNKPVQCLVSAKYDNLTVDRRSANYQPSIWDHDFLQSLNSNYTDETY*******KGKVMTTIKDVTEPLNQLELIDSLQRLGLAYHFETEIRNILHDIYNSNNDYVWRKENLYATSLEFRLLRQH******
Disordered Region (DISOPRED)
********************************************************NYQPSIWDHDFLQSLNSNYTDETYKRREEELKGKVMTTIKDVTEPLNQLELIDSLQRLGLAYHFETEIRNILHDIYNSNNDYVWRKENLYATSLEFRLLRQHGYP***
Disordered Region (DISEMBL)
MSSCINPSTLVTSVNGFKCLPLATNKAAIRIMAKNKPVQCLVSAKYDNLTVDRRSANYQPSIWDHDFLQSLNSNYTDETYKRREEELKGKVMTTIKDVTEPLNQLELIDSLQRLGLAYHFETEIRNILHDIYNSNNDYVWRKENLYATSLEFRLLRQHGYPVSQ
Disordered Region (DISPRO)
*************************************************TVDRRSANYQPSIWDHDFLQSLNSNYTDETYKRREEELKGKVMTTIKDVTEPLNQLELIDSLQRLGLAYHFETEIRNILHDIYNSNNDYVWRKENLYATSLEFRLLRQHGYPV**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSCINPSTLVTSVNGFKCLPLATNKAAIRIMAKNKPVQCLVSAKYDNLTVDRRSANYQPSIWDHDFLQSLNSNYTDETYKRREEELKGKVMTTIKDVTEPLNQLELIDSLQRLGLAYHFETEIRNILHDIYNSNNDYVWRKENLYATSLEFRLLRQHGYPVSQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	164	2.2.26 [Sep-21-2011]
Q8L5K3	606	(R)-limonene synthase 1 O	N/A	no	1.0	0.270	0.884	1e-75
Q93X23	597	Myrcene synthase, chlorop	N/A	no	0.786	0.216	0.549	6e-34
Q6PWU2	590	(-)-alpha-terpineol synth	no	no	0.682	0.189	0.592	7e-33
B3TPQ7	592	Alpha-terpineol synthase,	N/A	no	0.774	0.214	0.472	9e-27
A7IZZ2	615	(+)-alpha-pinene synthase	N/A	no	0.780	0.208	0.476	8e-26
Q2XSC4	538	Exo-alpha-bergamotene syn	N/A	no	0.670	0.204	0.491	4e-25
Q8L5K4	600	Gamma-terpinene synthase,	N/A	no	0.823	0.225	0.404	4e-24
Q8GUE4	603	Geraniol synthase, chloro	N/A	no	0.682	0.185	0.495	8e-24
Q5SBP4	541	Alpha-zingiberene synthas	N/A	no	0.682	0.207	0.495	1e-23
Q94G53	582	(-)-beta-pinene synthase,	N/A	no	0.810	0.228	0.454	2e-23

>sp|Q8L5K3|RLC1_CITLI (R)-limonene synthase 1 OS=Citrus limon PE=2 SV=1

 Score =  281 bits (720), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 145/164 (88%), Positives = 153/164 (93%)

Query: 1   MSSCINPSTLVTSVNGFKCLPLATNKAAIRIMAKNKPVQCLVSAKYDNLTVDRRSANYQP 60
           MSSCINPSTLVTSVN FKCLPLATNKAAIRIMAK KPVQCL+SAKYDNLTVDRRSANYQP
Sbjct: 1   MSSCINPSTLVTSVNAFKCLPLATNKAAIRIMAKYKPVQCLISAKYDNLTVDRRSANYQP 60

Query: 61  SIWDHDFLQSLNSNYTDETYKRREEELKGKVMTTIKDVTEPLNQLELIDSLQRLGLAYHF 120
           SIWDHDFLQSLNSNYTDE YKRR EEL+GKV   IKDV EPL+QLELID+LQRLGLA+ F
Sbjct: 61  SIWDHDFLQSLNSNYTDEAYKRRAEELRGKVKIAIKDVIEPLDQLELIDNLQRLGLAHRF 120

Query: 121 ETEIRNILHDIYNSNNDYVWRKENLYATSLEFRLLRQHGYPVSQ 164
           ETEIRNIL++IYN+N DY WRKENLYATSLEFRLLRQHGYPVSQ
Sbjct: 121 ETEIRNILNNIYNNNKDYNWRKENLYATSLEFRLLRQHGYPVSQ 164

Citrus limon (taxid: 2708)
EC: 4EC: .EC: 2EC: .EC: 3EC: .EC: 2EC: 0

>sp|Q93X23|MYRS_QUEIL Myrcene synthase, chloroplastic OS=Quercus ilex PE=1 SV=1

 Score =  143 bits (360), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 72/131 (54%), Positives = 94/131 (71%), Gaps = 2/131 (1%)

Query: 36  KPVQCLVSAKYD-NLTVDRRSANYQPSIWDHDFLQSLNSNYTDETYKRREEELKGKVMTT 94
           +PVQC+V+ K   +  + RRSANYQPSIW+HD+++SL   Y  ET  R+   LK +V   
Sbjct: 39  RPVQCMVANKVSTSPDILRRSANYQPSIWNHDYIESLRIEYVGETCTRQINVLKEQVRMM 98

Query: 95  IKDVTEPLNQLELIDSLQRLGLAYHFETEIRNILHDIYNSNNDY-VWRKENLYATSLEFR 153
           +  V  PL QLELI+ LQRLGL+YHFE EI+ IL  +YN+++    W+ ENLYAT+L+FR
Sbjct: 99  LHKVVNPLEQLELIEILQRLGLSYHFEEEIKRILDGVYNNDHGGDTWKAENLYATALKFR 158

Query: 154 LLRQHGYPVSQ 164
           LLRQHGY VSQ
Sbjct: 159 LLRQHGYSVSQ 169

Involved in monoterpene (C10) biosynthesis. The major product is myrcene followed by minor amounts (1.2%) of the cyclic monoterpene limonene.

Quercus ilex (taxid: 58334)

EC: 4

EC: .

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: 5

>sp|Q6PWU2|ATESY_VITVI (-)-alpha-terpineol synthase OS=Vitis vinifera PE=1 SV=1

 Score =  139 bits (350), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 67/113 (59%), Positives = 87/113 (76%), Gaps = 1/113 (0%)

Query: 53  RRSANYQPSIWDHDFLQSLNSNYTDETYKRREEELKGKVMTTIKDVTEPLNQLELIDSLQ 112
           RR+ANY P+IWD+D++QSL S+Y  ETY RR ++LK  V   +  V +PL+QLELID LQ
Sbjct: 49  RRTANYHPTIWDYDYVQSLRSDYVGETYTRRLDKLKRDVKPMLGKVKKPLDQLELIDVLQ 108

Query: 113 RLGLAYHFETEIRNILHDIYNSNNDY-VWRKENLYATSLEFRLLRQHGYPVSQ 164
           RLG+ YHF+ EI+ IL+ IYN  N +  W+K++LYAT+LEFRLLRQHGY V Q
Sbjct: 109 RLGIYYHFKDEIKRILNGIYNQYNRHEEWQKDDLYATALEFRLLRQHGYDVPQ 161

Mediates the conversion of geranyl diphosphate into alpha-terpineol, a monoterpenol. Monoterpenols contribute to the final grape and wine aroma and flavor. Also forms some 1,8-cineole and traces of other monoterpenoids.

Vitis vinifera (taxid: 29760)

EC: 4

EC: .

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: 1

EC: 1

>sp|B3TPQ7|ATESY_MAGGA Alpha-terpineol synthase, chloroplastic OS=Magnolia grandiflora PE=1 SV=1

 Score =  119 bits (298), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 60/127 (47%), Positives = 80/127 (62%)

Query: 38  VQCLVSAKYDNLTVDRRSANYQPSIWDHDFLQSLNSNYTDETYKRREEELKGKVMTTIKD 97
           ++C  S +   L   RRSANY P+IWD+D +QSL S+Y   TY  R E+LK  V  T+++
Sbjct: 39  LRCCASTQVTELMTARRSANYHPNIWDYDSVQSLTSDYKAYTYLERVEKLKEDVRRTLQE 98

Query: 98  VTEPLNQLELIDSLQRLGLAYHFETEIRNILHDIYNSNNDYVWRKENLYATSLEFRLLRQ 157
               L+QLEL+D + RLG+ YHF+ EI+ IL  I    N+      +LYA +L FRLLRQ
Sbjct: 99  AVGLLDQLELVDCIHRLGVGYHFDKEIKEILKTISTEPNNMGLIDGDLYAMALYFRLLRQ 158

Query: 158 HGYPVSQ 164
           HGY V Q
Sbjct: 159 HGYEVPQ 165

Monoterpene synthase converting geranyl diphosphate into alpha-terpineol. In vitro, can also have an sesquiterpene synthase activity, converting farnesyl diphosphate into (E)-alpha-bisabolene (33.1%), alpha-bisabolene (18.7%), beta-sesquiphellandrene (15.8%), beta-bergamotene (12.6%), (Z)-alpha-farnesene (10.4%), and (Z)-alpha-bisabolene (9.4%).

Magnolia grandiflora (taxid: 3406)

EC: 4

EC: .

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: 1

EC: 2

>sp|A7IZZ2|TPS2_CANSA (+)-alpha-pinene synthase, chloroplastic OS=Cannabis sativa PE=1 SV=1

 Score =  116 bits (290), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 62/130 (47%), Positives = 83/130 (63%), Gaps = 2/130 (1%)

Query: 37  PVQCLV--SAKYDNLTVDRRSANYQPSIWDHDFLQSLNSNYTDETYKRREEELKGKVMTT 94
           P+QC +  S   D  T+ RRSANY P IW  DF+QSL   Y  E Y  R  +LK +V   
Sbjct: 53  PIQCSLAKSPSSDTSTIVRRSANYDPPIWSFDFIQSLPCKYKGEPYTSRSNKLKEEVKKM 112

Query: 95  IKDVTEPLNQLELIDSLQRLGLAYHFETEIRNILHDIYNSNNDYVWRKENLYATSLEFRL 154
           +  +   L QLELID+LQRLG++YHFE EI +IL + + + +     K +LYAT+LEFRL
Sbjct: 113 LVGMENSLVQLELIDTLQRLGISYHFENEIISILKEYFTNISTNKNPKYDLYATALEFRL 172

Query: 155 LRQHGYPVSQ 164
           LR++GY + Q
Sbjct: 173 LREYGYAIPQ 182

Involved in monoterpene (C10) olefins biosynthesis. The major product is (+)-alpha-pinene.

Cannabis sativa (taxid: 3483)

EC: 4

EC: .

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: 4

>sp|Q2XSC4|LABER_LAVAN Exo-alpha-bergamotene synthase OS=Lavandula angustifolia PE=1 SV=1

 Score =  114 bits (284), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 55/112 (49%), Positives = 83/112 (74%), Gaps = 2/112 (1%)

Query: 53  RRSANYQPSIWDHDFLQSLNSNYTDETYKRREEELKGKVMTTIKDVTEPLNQLELIDSLQ 112
           RRS N++ SIWD D++QSL S+YT + Y  + E+LK +V   + + T+ L QLELI+ LQ
Sbjct: 4   RRSGNFESSIWDDDYIQSLTSSYTGKMYVDKSEKLKIEVKMMMDEATDELEQLELINDLQ 63

Query: 113 RLGLAYHFETEIRNILHDIYNSNNDYVWRKENLYATSLEFRLLRQHGYPVSQ 164
           RLG++YHF+  I  +L++IY S++ Y+  +++L+ T+L+FRLLRQHGY V Q
Sbjct: 64  RLGISYHFKDGIAKMLNNIYKSDSKYM--EKDLHLTALKFRLLRQHGYRVPQ 113

Catalyzes a mixture of sesquiterpenoids from (2E,6E)-farnesyl diphosphate. Catalyzes the formation of exo-alpha-bergamotene, as well as (E)-nerolidol, (Z)-alpha-bisabolene, (E)-beta-farnesene and beta-sesquiphellandrene. Also has activity towards geranyl diphosphate, but to a much lesser extent.

Lavandula angustifolia (taxid: 39329)

EC: 4

EC: .

EC: 2

EC: .

EC: 3

EC: .

EC: 8

EC: 1

>sp|Q8L5K4|GTPS_CITLI Gamma-terpinene synthase, chloroplastic OS=Citrus limon PE=1 SV=1

 Score =  110 bits (275), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 68/168 (40%), Positives = 101/168 (60%), Gaps = 33/168 (19%)

Query: 10  LVTSVNGFKC------LPLATNKAAIRIMAKNKPVQCLVSAKYDNLTVDRRSANYQPSIW 63
           L + VNGF         P+A + ++I      KPV         + T+ RRSA+Y P+IW
Sbjct: 22  LSSKVNGFVPPITQVQYPMAASTSSI------KPV---------DQTIIRRSADYGPTIW 66

Query: 64  DHDFLQSLNSNYTDETYKRREEELKGKVMTTIKDVT-----EPLNQLELIDSLQRLGLAY 118
             D++QSL+S Y  E+Y R+ E+LK +V   ++        +PL+QLELID+L RLG++Y
Sbjct: 67  SFDYIQSLDSKYKGESYARQLEKLKEQVSAMLQQDNKVVDLDPLHQLELIDNLHRLGVSY 126

Query: 119 HFETEIRNILHDIYNSNNDYVWRKENLYATSLEFRLLRQHGY--PVSQ 164
           HFE EI+  L  I+N N +     ++LYA +L+FR+LRQ+GY  PV +
Sbjct: 127 HFEDEIKRTLDRIHNKNTN-----KSLYARALKFRILRQYGYKTPVKE 169

Monoterpene synthase which catalyzes the conversion of geranyl diphosphate to gamma-terpinene and the minor products limonene, alpha-pinene, beta-pinene, alpha-terpinolene, alpha-thujene, alpha-terpinene, myrcene and sabinene.

Citrus limon (taxid: 2708)

EC: 4

EC: .

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: 1

EC: 4

>sp|Q8GUE4|GERS_CINTE Geraniol synthase, chloroplastic OS=Cinnamomum tenuipile GN=GerS PE=1 SV=2

 Score =  109 bits (273), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 56/113 (49%), Positives = 78/113 (69%), Gaps = 1/113 (0%)

Query: 51  VDRRSANYQPSIWDHDFLQSLNSNYTDETYKRREEELKGKVMTTIKDVTEPLNQLELIDS 110
           V RRS NY+PSIWD+DF+QSL S Y  E +  R ++LK  V   +K+    L Q+ELID 
Sbjct: 49  VPRRSGNYKPSIWDYDFVQSLGSGYKVEAHGTRVKKLKEVVKHLLKETDSSLAQIELIDK 108

Query: 111 LQRLGLAYHFETEIRNILHDIYNSNNDYVWRKENLYATSLEFRLLRQHGYPVS 163
           L+RLGL + F+ EI+ +L+ I +S+N  +  +++L+A S  FRLLRQHGY VS
Sbjct: 109 LRRLGLRWLFKNEIKQVLYTI-SSDNTSIEMRKDLHAVSTRFRLLRQHGYKVS 160

Monoterpene synthase that catalyzes the formation of geraniol from geranyl diphosphate.

Cinnamomum tenuipile (taxid: 192326)

EC: 3

EC: .

EC: 1

EC: .

EC: 7

EC: .

EC: 1

EC: 1

>sp|Q5SBP4|AZIS_OCIBA Alpha-zingiberene synthase OS=Ocimum basilicum GN=ZIS PE=1 SV=1

 Score =  108 bits (270), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 57/115 (49%), Positives = 76/115 (66%), Gaps = 3/115 (2%)

Query: 53  RRSANYQPSIWDHDFLQSLNSNYTDETYKRREEELKGKVMTTIKDVTEPLNQLELIDSLQ 112
           RRSANYQ SIWD +F+QSL S Y  E Y  + E+LK +V T I    + L QLELID+LQ
Sbjct: 4   RRSANYQASIWDDNFIQSLASPYAGEKYAEKAEKLKTEVKTMIDQTRDELKQLELIDNLQ 63

Query: 113 RLGLAYHFETEIRNILHDIYNS--NNDYV-WRKENLYATSLEFRLLRQHGYPVSQ 164
           RLG+ +HF+   + IL  IY    N D+  ++++ L+ T+L FR+LRQ GY V Q
Sbjct: 64  RLGICHHFQDLTKKILQKIYGEERNGDHQHYKEKGLHFTALRFRILRQDGYHVPQ 118

Sesquiterpene synthase that catalyzes the formation of alpha-zingiberene and other sesquiterpenes from trans,trans-farnesyl diphosphate (FPP). May have an additional monoterpene synthase activity.

Ocimum basilicum (taxid: 39350)

EC: 4

EC: .

EC: 2

EC: .

EC: 3

EC: .

EC: 6

EC: 5

>sp|Q94G53|QH6_ARTAN (-)-beta-pinene synthase,chloroplastic OS=Artemisia annua GN=QH6 PE=1 SV=1

 Score =  108 bits (269), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 65/143 (45%), Positives = 85/143 (59%), Gaps = 10/143 (6%)

Query: 31  IMAKNKPVQCLVSAKYDNL----TVDRRSANYQPSIWDHDFLQSLNSNYTDETYKRREEE 86
           I+A NK    L  A+  N+    T +RRSANY PS+W +DF+QSL+S Y  + Y  R   
Sbjct: 23  IVACNKQTSTL-QAQVKNVATIETTNRRSANYAPSLWSYDFVQSLSSKYKGDNYMARSRA 81

Query: 87  LKGKVMTTIKD---VTEPLNQLELIDSLQRLGLAYHFETEIRNILHDIYNS--NNDYVWR 141
           LKG V T I +   +  PL+ L L+D LQRLG++YHF  EI N+L  IY +   +   W 
Sbjct: 82  LKGVVRTMILEANGIENPLSLLNLVDDLQRLGISYHFLDEISNVLEKIYLNFYKSPEKWT 141

Query: 142 KENLYATSLEFRLLRQHGYPVSQ 164
             +L   SL FRLLRQHGY + Q
Sbjct: 142 NMDLNLRSLGFRLLRQHGYHIPQ 164

Monoterpene synthase converting geranyl diphosphate to (-)-beta-pinene and (-)-alpha-pinene in a 94:6 ratio.

Artemisia annua (taxid: 35608)

EC: 4

EC: .

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: 2

EC: 0

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	164
49659435	606	d-limonene synthase [Citrus unshiu]	1.0	0.270	1.0	6e-93
21435708	606	(+)-limonene synthase 2 [Citrus limon]	1.0	0.270	0.920	2e-85
49659437	608	d-limonene synthase [Citrus unshiu]	1.0	0.269	0.908	1e-83
209446863	607	limonene synthase [Poncirus trifoliata]	1.0	0.270	0.896	3e-83
41017756	606	RecName: Full=(R)-limonene synthase 1; A	1.0	0.270	0.884	5e-74
394556815	612	geraniol synthase [Citrus jambhiri]	1.0	0.267	0.878	1e-72
322424201	607	limonene synthase [Murraya paniculata]	0.993	0.268	0.678	5e-58
147843306	604	hypothetical protein VITISV_017009 [Viti	0.792	0.215	0.586	1e-36
225465911	593	PREDICTED: myrcene synthase, chloroplast	0.792	0.219	0.586	1e-36
147773919	605	hypothetical protein VITISV_016813 [Viti	0.792	0.214	0.578	3e-36

>gi|49659435|dbj|BAD27256.1| d-limonene synthase [Citrus unshiu]

 Score =  344 bits (883), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 164/164 (100%), Positives = 164/164 (100%)

Query: 1   MSSCINPSTLVTSVNGFKCLPLATNKAAIRIMAKNKPVQCLVSAKYDNLTVDRRSANYQP 60
           MSSCINPSTLVTSVNGFKCLPLATNKAAIRIMAKNKPVQCLVSAKYDNLTVDRRSANYQP
Sbjct: 1   MSSCINPSTLVTSVNGFKCLPLATNKAAIRIMAKNKPVQCLVSAKYDNLTVDRRSANYQP 60

Query: 61  SIWDHDFLQSLNSNYTDETYKRREEELKGKVMTTIKDVTEPLNQLELIDSLQRLGLAYHF 120
           SIWDHDFLQSLNSNYTDETYKRREEELKGKVMTTIKDVTEPLNQLELIDSLQRLGLAYHF
Sbjct: 61  SIWDHDFLQSLNSNYTDETYKRREEELKGKVMTTIKDVTEPLNQLELIDSLQRLGLAYHF 120

Query: 121 ETEIRNILHDIYNSNNDYVWRKENLYATSLEFRLLRQHGYPVSQ 164
           ETEIRNILHDIYNSNNDYVWRKENLYATSLEFRLLRQHGYPVSQ
Sbjct: 121 ETEIRNILHDIYNSNNDYVWRKENLYATSLEFRLLRQHGYPVSQ 164

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21435708|gb|AAM53946.1|AF514289_1 (+)-limonene synthase 2 [Citrus limon]

 Score =  319 bits (818), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 151/164 (92%), Positives = 156/164 (95%)

Query: 1   MSSCINPSTLVTSVNGFKCLPLATNKAAIRIMAKNKPVQCLVSAKYDNLTVDRRSANYQP 60
           MSSCINPSTLVTS NGFKCLPLATNKAAIRIMAKNKPVQCLVSAKYDNL VDRRSANYQP
Sbjct: 1   MSSCINPSTLVTSANGFKCLPLATNKAAIRIMAKNKPVQCLVSAKYDNLIVDRRSANYQP 60

Query: 61  SIWDHDFLQSLNSNYTDETYKRREEELKGKVMTTIKDVTEPLNQLELIDSLQRLGLAYHF 120
           SIWDHDFLQSLNSNYTDETY+RR EELKGKV   IKDVTEPL+QLELID+LQRLGLAY F
Sbjct: 61  SIWDHDFLQSLNSNYTDETYRRRAEELKGKVKIAIKDVTEPLDQLELIDNLQRLGLAYRF 120

Query: 121 ETEIRNILHDIYNSNNDYVWRKENLYATSLEFRLLRQHGYPVSQ 164
           ETEIRNILH+IYN+N DYVWRKENLYATSLEFRLLRQHGYPVSQ
Sbjct: 121 ETEIRNILHNIYNNNKDYVWRKENLYATSLEFRLLRQHGYPVSQ 164

Source: Citrus limon

Species: Citrus limon

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|49659437|dbj|BAD27257.1| d-limonene synthase [Citrus unshiu]

 Score =  313 bits (802), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 149/164 (90%), Positives = 154/164 (93%)

Query: 1   MSSCINPSTLVTSVNGFKCLPLATNKAAIRIMAKNKPVQCLVSAKYDNLTVDRRSANYQP 60
           MSSCINPSTL TSVNGFKCLPLATN+AAIRIMAKNKPVQCLVS KYDNLTVDRRSANYQP
Sbjct: 1   MSSCINPSTLATSVNGFKCLPLATNRAAIRIMAKNKPVQCLVSTKYDNLTVDRRSANYQP 60

Query: 61  SIWDHDFLQSLNSNYTDETYKRREEELKGKVMTTIKDVTEPLNQLELIDSLQRLGLAYHF 120
           SIWDHDFLQSLNSNYTDETYKRR EELKGKV T IKDVTEPL+QLELID+LQRLGLAYHF
Sbjct: 61  SIWDHDFLQSLNSNYTDETYKRRAEELKGKVKTAIKDVTEPLDQLELIDNLQRLGLAYHF 120

Query: 121 ETEIRNILHDIYNSNNDYVWRKENLYATSLEFRLLRQHGYPVSQ 164
           E EIRNIL +I+N N DY WRKENLYATSLEFRLLRQHGYPVSQ
Sbjct: 121 EPEIRNILRNIHNHNKDYNWRKENLYATSLEFRLLRQHGYPVSQ 164

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|209446863|dbj|BAG74774.1| limonene synthase [Poncirus trifoliata]

 Score =  312 bits (799), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 147/164 (89%), Positives = 156/164 (95%)

Query: 1   MSSCINPSTLVTSVNGFKCLPLATNKAAIRIMAKNKPVQCLVSAKYDNLTVDRRSANYQP 60
           MSSCINPSTL TSVNGFK LPLATN+AAIRI AKNKPVQCLVSAKYDNLTVDRRSANYQP
Sbjct: 1   MSSCINPSTLATSVNGFKYLPLATNRAAIRITAKNKPVQCLVSAKYDNLTVDRRSANYQP 60

Query: 61  SIWDHDFLQSLNSNYTDETYKRREEELKGKVMTTIKDVTEPLNQLELIDSLQRLGLAYHF 120
            IWDHDFLQSLNS+YTDETY+RR EELKGKV T I+DVTEPL+QLELID+LQRLGLAYHF
Sbjct: 61  PIWDHDFLQSLNSDYTDETYRRRAEELKGKVKTAIEDVTEPLDQLELIDNLQRLGLAYHF 120

Query: 121 ETEIRNILHDIYNSNNDYVWRKENLYATSLEFRLLRQHGYPVSQ 164
           ETEIRNILH+IYN+N DY+WRKENLYATSLEFRLLRQHGYPVSQ
Sbjct: 121 ETEIRNILHNIYNNNKDYIWRKENLYATSLEFRLLRQHGYPVSQ 164

Source: Poncirus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|41017756|sp|Q8L5K3.1|RLC1_CITLI RecName: Full=(R)-limonene synthase 1; AltName: Full=(+)-limonene synthase 1 gi|21435703|gb|AAM53944.1|AF514287_1 (+)-limonene synthase 1 [Citrus limon] gi|152962684|dbj|BAF73932.1| limonene synthase [Citrus jambhiri]

 Score =  281 bits (720), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 145/164 (88%), Positives = 153/164 (93%)

Query: 1   MSSCINPSTLVTSVNGFKCLPLATNKAAIRIMAKNKPVQCLVSAKYDNLTVDRRSANYQP 60
           MSSCINPSTLVTSVN FKCLPLATNKAAIRIMAK KPVQCL+SAKYDNLTVDRRSANYQP
Sbjct: 1   MSSCINPSTLVTSVNAFKCLPLATNKAAIRIMAKYKPVQCLISAKYDNLTVDRRSANYQP 60

Query: 61  SIWDHDFLQSLNSNYTDETYKRREEELKGKVMTTIKDVTEPLNQLELIDSLQRLGLAYHF 120
           SIWDHDFLQSLNSNYTDE YKRR EEL+GKV   IKDV EPL+QLELID+LQRLGLA+ F
Sbjct: 61  SIWDHDFLQSLNSNYTDEAYKRRAEELRGKVKIAIKDVIEPLDQLELIDNLQRLGLAHRF 120

Query: 121 ETEIRNILHDIYNSNNDYVWRKENLYATSLEFRLLRQHGYPVSQ 164
           ETEIRNIL++IYN+N DY WRKENLYATSLEFRLLRQHGYPVSQ
Sbjct: 121 ETEIRNILNNIYNNNKDYNWRKENLYATSLEFRLLRQHGYPVSQ 164

Source: Citrus limon

Species: Citrus limon

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|394556815|dbj|BAM29049.1| geraniol synthase [Citrus jambhiri]

 Score =  277 bits (708), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 144/164 (87%), Positives = 151/164 (92%)

Query: 1   MSSCINPSTLVTSVNGFKCLPLATNKAAIRIMAKNKPVQCLVSAKYDNLTVDRRSANYQP 60
           MSS INPSTLVTSVNGFKCLPL TNKAAIRIMAKNKP+QCLVSAKYDNLTVDRRSANYQP
Sbjct: 1   MSSSINPSTLVTSVNGFKCLPLTTNKAAIRIMAKNKPLQCLVSAKYDNLTVDRRSANYQP 60

Query: 61  SIWDHDFLQSLNSNYTDETYKRREEELKGKVMTTIKDVTEPLNQLELIDSLQRLGLAYHF 120
           SIWDHDFLQSLNS YTDE YKRR E LKGKV   IKDV EPL+QLELID+LQRLGLA+ F
Sbjct: 61  SIWDHDFLQSLNSKYTDEAYKRRAEGLKGKVKIAIKDVIEPLDQLELIDNLQRLGLAHRF 120

Query: 121 ETEIRNILHDIYNSNNDYVWRKENLYATSLEFRLLRQHGYPVSQ 164
           ETEIRNIL++IYN+N DY WRKENLYATSLEFRLLRQHGYPVSQ
Sbjct: 121 ETEIRNILNNIYNNNKDYNWRKENLYATSLEFRLLRQHGYPVSQ 164

Source: Citrus jambhiri

Species: Citrus jambhiri

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|322424201|gb|ADX01382.1| limonene synthase [Murraya paniculata]

 Score =  228 bits (582), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 114/168 (67%), Positives = 134/168 (79%), Gaps = 5/168 (2%)

Query: 1   MSSCINPSTLVTSVNGFK-CLPLATNKAAIRIMAKNKPVQCLVSAKYDNLTVDRRSANYQ 59
           MSSCINPST + SVNGFK C PL TN+AA   M++ KP QCL SA+ D   V  RSANYQ
Sbjct: 1   MSSCINPSTSINSVNGFKLCPPLTTNRAATMRMSEYKPTQCLASAQPDTAAVVGRSANYQ 60

Query: 60  PSIWDHDFLQSLNSNYTDETYKRREEELKGKVMTTIKDVT---EPLNQLELIDSLQRLGL 116
           PSIWDHDFL SL+ N+  E+YK++ E LKGKV T I +V+   +PL+QLELID+LQRLGL
Sbjct: 61  PSIWDHDFLHSLSGNFAGESYKKQTENLKGKVKTVINEVSVTNKPLDQLELIDNLQRLGL 120

Query: 117 AYHFETEIRNILHDIYNSNNDYVWRKENLYATSLEFRLLRQHGYPVSQ 164
           AYHFETEI+NILH++YN+  D  W+KENLYATSLEFRLLRQHGY VSQ
Sbjct: 121 AYHFETEIKNILHNVYNNKYD-KWKKENLYATSLEFRLLRQHGYNVSQ 167

Source: Murraya paniculata

Species: Murraya paniculata

Genus: Murraya

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147843306|emb|CAN82665.1| hypothetical protein VITISV_017009 [Vitis vinifera]

 Score =  157 bits (397), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 78/133 (58%), Positives = 98/133 (73%), Gaps = 3/133 (2%)

Query: 35  NKPVQCLVSAKYDNLT--VDRRSANYQPSIWDHDFLQSLNSNYTDETYKRREEELKGKVM 92
           + PVQC   AK  + T  + RR+A+YQPSIWDHD++QSL S+Y  ETY R+ E+LKG V 
Sbjct: 34  SGPVQCTGGAKTSSQTAVIVRRTASYQPSIWDHDYIQSLTSDYVGETYTRQLEKLKGDVK 93

Query: 93  TTIKDVTEPLNQLELIDSLQRLGLAYHFETEIRNILHDIYNS-NNDYVWRKENLYATSLE 151
             +  V EPL+QLELID+LQRLG+ YHF  EI+ ILH IYN+ N +  W+  +LYAT+LE
Sbjct: 94  IMLGQVGEPLHQLELIDTLQRLGIHYHFGEEIKRILHSIYNNYNRNDTWKNGDLYATALE 153

Query: 152 FRLLRQHGYPVSQ 164
           FRLLRQHGY V Q
Sbjct: 154 FRLLRQHGYHVPQ 166

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225465911|ref|XP_002267159.1| PREDICTED: myrcene synthase, chloroplastic [Vitis vinifera]

 Score =  157 bits (397), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 78/133 (58%), Positives = 98/133 (73%), Gaps = 3/133 (2%)

Query: 35  NKPVQCLVSAKYDNLT--VDRRSANYQPSIWDHDFLQSLNSNYTDETYKRREEELKGKVM 92
           + PVQC   AK  + T  + RR+A+YQPSIWDHD++QSL S+Y  ETY R+ E+LKG V 
Sbjct: 34  SGPVQCTGGAKTSSQTAVIVRRTASYQPSIWDHDYIQSLTSDYVGETYTRQLEKLKGDVK 93

Query: 93  TTIKDVTEPLNQLELIDSLQRLGLAYHFETEIRNILHDIYNS-NNDYVWRKENLYATSLE 151
             +  V EPL+QLELID+LQRLG+ YHF  EI+ ILH IYN+ N +  W+  +LYAT+LE
Sbjct: 94  IMLGQVGEPLHQLELIDTLQRLGIHYHFGEEIKRILHGIYNNYNRNDTWKNGDLYATALE 153

Query: 152 FRLLRQHGYPVSQ 164
           FRLLRQHGY V Q
Sbjct: 154 FRLLRQHGYHVPQ 166

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147773919|emb|CAN60797.1| hypothetical protein VITISV_016813 [Vitis vinifera]

 Score =  156 bits (394), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 77/133 (57%), Positives = 97/133 (72%), Gaps = 3/133 (2%)

Query: 35  NKPVQCLVSAKYDN--LTVDRRSANYQPSIWDHDFLQSLNSNYTDETYKRREEELKGKVM 92
           + PVQC   AK  +    + RR+A+YQPSIWDHD++QSL S+Y  ETY R+ E+LKG V 
Sbjct: 34  SGPVQCTGGAKTSSQPAVIVRRTASYQPSIWDHDYIQSLTSDYVGETYTRQLEKLKGDVK 93

Query: 93  TTIKDVTEPLNQLELIDSLQRLGLAYHFETEIRNILHDIYNS-NNDYVWRKENLYATSLE 151
             +  V EPL+QLELID+LQRLG+ YHF  EI+ ILH IYN+ N +  W+  +LYAT+LE
Sbjct: 94  IMLGQVGEPLHQLELIDTLQRLGIHYHFGEEIKRILHSIYNNYNRNDTWKNGDLYATALE 153

Query: 152 FRLLRQHGYPVSQ 164
           FRLLRQHGY V Q
Sbjct: 154 FRLLRQHGYHVPQ 166

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	164
UNIPROTKB|J7LQ09	542	J7LQ09 "Trans-alpha-bergamoten	0.682	0.206	0.5	2.2e-25
UNIPROTKB|B3TPQ7	592	B3TPQ7 "Alpha-terpineol syntha	0.774	0.214	0.472	6.3e-25
UNIPROTKB|Q8GUE4	603	GerS "Geraniol synthase, chlor	0.780	0.212	0.465	1.8e-24
UNIPROTKB|Q8H2B4	606	Q8H2B4 "R-linalool synthase, c	0.798	0.216	0.467	3.9e-24
TAIR|locus:2086004	598	AT3G25810 [Arabidopsis thalian	0.707	0.193	0.487	1e-23
UNIPROTKB|J7LH11	546	J7LH11 "(+)-epi-alpha-bisabolo	0.695	0.208	0.465	1.3e-22
TAIR|locus:2829283	600	TPS-CIN ""terpene synthase-lik	0.695	0.19	0.483	1.3e-22
TAIR|locus:2086014	600	TPS-CIN ""terpene synthase-lik	0.695	0.19	0.483	1.3e-22
TAIR|locus:2047510	591	TPS10 "terpene synthase 10" [A	0.695	0.192	0.482	2e-22
UNIPROTKB|Q8L5K4	600	Q8L5K4 "Gamma-terpinene syntha	0.713	0.195	0.457	2.1e-22

UNIPROTKB|J7LQ09 J7LQ09 "Trans-alpha-bergamotene synthase" [Phyla dulcis (taxid:542674)]

 Score = 294 (108.6 bits), Expect = 2.2e-25, P = 2.2e-25
 Identities = 58/116 (50%), Positives = 84/116 (72%)

Query:    53 RRSANYQPSIWDHDFLQSLNSNYTDETYKRREEELKGKVMTTIKDVTEPLNQLELIDSLQ 112
             RRS N++ SIWD DFLQSL S YT + Y ++ ++LK +V   IK+  + L+QL+LID++Q
Sbjct:     4 RRSGNFKASIWDDDFLQSLTSPYTAKEYLKQADKLKWQVKVIIKETKQRLDQLDLIDNIQ 63

Query:   113 RLGLAYHFETEIRNILHDIYNSNN----DYVWRKENLYATSLEFRLLRQHGYPVSQ 164
             RLG+++HF  EI+ +L +IY        D +  +++LY+TSL+FRLLRQHGY VSQ
Sbjct:    64 RLGISHHFRDEIQRVLQNIYEKMRVECPDRMLMEKDLYSTSLQFRLLRQHGYHVSQ 119

GO:0010334 "sesquiterpene synthase activity" evidence=IDA

GO:0045339 "farnesyl diphosphate catabolic process" evidence=IDA

GO:1901940 "(-)-exo-alpha-bergamotene biosynthetic process" evidence=IDA

UNIPROTKB|B3TPQ7 B3TPQ7 "Alpha-terpineol synthase, chloroplastic" [Magnolia grandiflora (taxid:3406)]

 Score = 291 (107.5 bits), Expect = 6.3e-25, P = 6.3e-25
 Identities = 60/127 (47%), Positives = 80/127 (62%)

Query:    38 VQCLVSAKYDNLTVDRRSANYQPSIWDHDFLQSLNSNYTDETYKRREEELKGKVMTTIKD 97
             ++C  S +   L   RRSANY P+IWD+D +QSL S+Y   TY  R E+LK  V  T+++
Sbjct:    39 LRCCASTQVTELMTARRSANYHPNIWDYDSVQSLTSDYKAYTYLERVEKLKEDVRRTLQE 98

Query:    98 VTEPLNQLELIDSLQRLGLAYHFETEIRNILHDIYNSNNDYVWRKENLYATSLEFRLLRQ 157
                 L+QLEL+D + RLG+ YHF+ EI+ IL  I    N+      +LYA +L FRLLRQ
Sbjct:    99 AVGLLDQLELVDCIHRLGVGYHFDKEIKEILKTISTEPNNMGLIDGDLYAMALYFRLLRQ 158

Query:   158 HGYPVSQ 164
             HGY V Q
Sbjct:   159 HGYEVPQ 165

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0010333 "terpene synthase activity" evidence=IDA

GO:0033383 "geranyl diphosphate metabolic process" evidence=IDA

GO:0043693 "monoterpene biosynthetic process" evidence=IDA

UNIPROTKB|Q8GUE4 GerS "Geraniol synthase, chloroplastic" [Cinnamomum tenuipile (taxid:192326)]

 Score = 287 (106.1 bits), Expect = 1.8e-24, P = 1.8e-24
 Identities = 60/129 (46%), Positives = 82/129 (63%)

Query:    35 NKPVQCLVSAKYDNLTVDRRSANYQPSIWDHDFLQSLNSNYTDETYKRREEELKGKVMTT 94
             +K + C  +    + TV RRS NY+PSIWD+DF+QSL S Y  E +  R ++LK  V   
Sbjct:    33 SKHISCSTTTPTYSTTVPRRSGNYKPSIWDYDFVQSLGSGYKVEAHGTRVKKLKEVVKHL 92

Query:    95 IKDVTEPLNQLELIDSLQRLGLAYHFETEIRNILHDIYNSNNDYVWRKENLYATSLEFRL 154
             +K+    L Q+ELID L+RLGL + F+ EI+ +L+ I + N     RK+ L+A S  FRL
Sbjct:    93 LKETDSSLAQIELIDKLRRLGLRWLFKNEIKQVLYTISSDNTSIEMRKD-LHAVSTRFRL 151

Query:   155 LRQHGYPVS 163
             LRQHGY VS
Sbjct:   152 LRQHGYKVS 160

GO:0000287 "magnesium ion binding" evidence=IDA

GO:0016787 "hydrolase activity" evidence=IDA

GO:0030145 "manganese ion binding" evidence=IDA

GO:0033383 "geranyl diphosphate metabolic process" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=ISS

UNIPROTKB|Q8H2B4 Q8H2B4 "R-linalool synthase, chloroplastic" [Mentha aquatica (taxid:190902)]

 Score = 284 (105.0 bits), Expect = 3.9e-24, P = 3.9e-24
 Identities = 65/139 (46%), Positives = 88/139 (63%)

Query:    33 AKNKPVQCLVSAKYDNLTV----DRRSANYQPSIWDHDFLQSLNSN-YTDETYKRREEEL 87
             A ++P+ C +S+K   ++      RRS NY PS+WD DF+QSL+++ Y +E    REEEL
Sbjct:    45 AASRPISCSISSKLYTISSAQEETRRSGNYHPSVWDFDFIQSLDTDHYKEEKQLEREEEL 104

Query:    88 KGKVMTTIKDVTEPLNQLELIDSLQRLGLAYHFETEIRNILHDIYN--SNNDYVWRKENL 145
               +V   +    E   QLELID LQ LGL+Y F  EI+NIL+ IY    NN+   +  +L
Sbjct:   105 IMEVKKLLGAKMEATKQLELIDDLQNLGLSYFFRDEIKNILNSIYKIFQNNNST-KVGDL 163

Query:   146 YATSLEFRLLRQHGYPVSQ 164
             + TSL FRLLRQHG+ VSQ
Sbjct:   164 HFTSLGFRLLRQHGFNVSQ 182

GO:0000287 "magnesium ion binding" evidence=IDA

GO:0030145 "manganese ion binding" evidence=IDA

GO:0033383 "geranyl diphosphate metabolic process" evidence=IDA

GO:0034008 "R-linalool synthase activity" evidence=IDA

TAIR|locus:2086004 AT3G25810 [Arabidopsis thaliana (taxid:3702)]

 Score = 280 (103.6 bits), Expect = 1.0e-23, P = 1.0e-23
 Identities = 59/121 (48%), Positives = 82/121 (67%)

Query:    49 LTVDRRSANYQPSIWDHDFLQSLNSNYTDETYKRREEELKGKVMTTIKDV-TEP-LNQLE 106
             L + RRS NYQPS WDH +L S+ + Y +E        LK KV   +++V T+  L +LE
Sbjct:    43 LDLRRRSGNYQPSSWDHSYLLSIENKYVNEKEVITRHVLKKKVKKMLEEVETKSRLEKLE 102

Query:   107 LIDSLQRLGLAYHFETEIRNILHDIYNSNNDYVWR---KENLYATSLEFRLLRQHGYPVS 163
             LID LQ+LG++YHFE EI NIL + +  N   +W+   +E+L+AT+LEFRLLRQHG+ VS
Sbjct:   103 LIDDLQKLGVSYHFEQEINNILTNFHLENGKNIWKCDKEEDLHATALEFRLLRQHGFGVS 162

Query:   164 Q 164
             +
Sbjct:   163 E 163

GO:0000287 "magnesium ion binding" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0010333 "terpene synthase activity" evidence=IEA

GO:0016829 "lyase activity" evidence=IEA

GO:0010334 "sesquiterpene synthase activity" evidence=IDA

GO:0034002 "(R)-limonene synthase activity" evidence=IDA

GO:0034768 "(E)-beta-ocimene synthase activity" evidence=IDA

GO:0043693 "monoterpene biosynthetic process" evidence=IDA

GO:0050550 "pinene synthase activity" evidence=IDA

GO:0050551 "myrcene synthase activity" evidence=IDA

GO:0050552 "(4S)-limonene synthase activity" evidence=IDA

GO:0080015 "sabinene synthase activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|J7LH11 J7LH11 "(+)-epi-alpha-bisabolol synthase" [Phyla dulcis (taxid:542674)]

 Score = 269 (99.8 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 54/116 (46%), Positives = 81/116 (69%)

Query:    50 TVDRRSANYQPSIWDHDFLQSLNSNYTDETYKRREEELKGKVMTTIKDVTEPLNQLELID 109
             +  RRSANY+P+IW++++LQSLNS Y ++ +  + E+LK +V   ++  ++PL+ +EL+D
Sbjct:     3 STSRRSANYKPTIWNNEYLQSLNSIYGEKRFLEQAEKLKDEVRMLLEKTSDPLDHIELVD 62

Query:   110 SLQRLGLAYHFETEIRNILHDIYNSNND-YVWRK-ENLYATSLEFRLLRQHGYPVS 163
              LQRL ++YHF   I   L +IY+   D   W   +NL+AT+L FRLLRQHGY VS
Sbjct:    63 VLQRLAISYHFTEYIDRNLKNIYDILIDGRRWNHADNLHATTLSFRLLRQHGYQVS 118

GO:0010334 "sesquiterpene synthase activity" evidence=IDA

GO:0045339 "farnesyl diphosphate catabolic process" evidence=IDA

GO:1901943 "(+)-epi-alpha-bisabolol biosynthetic process" evidence=IDA

TAIR|locus:2829283 TPS-CIN ""terpene synthase-like sequence-1,8-cineole"" [Arabidopsis thaliana (taxid:3702)]

 Score = 270 (100.1 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 57/118 (48%), Positives = 78/118 (66%)

Query:    51 VDRRSANYQPSIWDHDFLQSLNSNYTDETYKRREEELKGKVMTTIKDVTEP-LNQLELID 109
             + RRS NYQPS W+H +L S+ + Y  ET     + LK KV + + D  +  L QLELID
Sbjct:    45 LSRRSGNYQPSPWNHCYLLSIENKYASETEVITRDVLKKKVKSMLDDEKKSRLEQLELID 104

Query:   110 SLQRLGLAYHFETEIRNILHDIYNSNNDYVWR---KENLYATSLEFRLLRQHGYPVSQ 164
              LQ+LG++YHFE EI + L D++       W+   +E+L+ATSLEFRLLRQHG+ VS+
Sbjct:   105 DLQKLGVSYHFEIEINDTLTDLHLKMGRNCWKCDKEEDLHATSLEFRLLRQHGFDVSE 162

GO:0000287 "magnesium ion binding" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0010333 "terpene synthase activity" evidence=IEA

GO:0016829 "lyase activity" evidence=IEA

GO:0016099 "monoterpenoid biosynthetic process" evidence=IDA

GO:0034768 "(E)-beta-ocimene synthase activity" evidence=IDA

GO:0050551 "myrcene synthase activity" evidence=IDA

TAIR|locus:2086014 TPS-CIN ""terpene synthase-like sequence-1,8-cineole"" [Arabidopsis thaliana (taxid:3702)]

 Score = 270 (100.1 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 57/118 (48%), Positives = 78/118 (66%)

Query:    51 VDRRSANYQPSIWDHDFLQSLNSNYTDETYKRREEELKGKVMTTIKDVTEP-LNQLELID 109
             + RRS NYQPS W+H +L S+ + Y  ET     + LK KV + + D  +  L QLELID
Sbjct:    45 LSRRSGNYQPSPWNHCYLLSIENKYASETEVITRDVLKKKVKSMLDDEKKSRLEQLELID 104

Query:   110 SLQRLGLAYHFETEIRNILHDIYNSNNDYVWR---KENLYATSLEFRLLRQHGYPVSQ 164
              LQ+LG++YHFE EI + L D++       W+   +E+L+ATSLEFRLLRQHG+ VS+
Sbjct:   105 DLQKLGVSYHFEIEINDTLTDLHLKMGRNCWKCDKEEDLHATSLEFRLLRQHGFDVSE 162

GO:0000287 "magnesium ion binding" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0010333 "terpene synthase activity" evidence=IEA

GO:0016099 "monoterpenoid biosynthetic process" evidence=ISS;IDA

GO:0016829 "lyase activity" evidence=IEA

GO:0034768 "(E)-beta-ocimene synthase activity" evidence=IDA

GO:0050551 "myrcene synthase activity" evidence=IDA

TAIR|locus:2047510 TPS10 "terpene synthase 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 268 (99.4 bits), Expect = 2.0e-22, P = 2.0e-22
 Identities = 56/116 (48%), Positives = 76/116 (65%)

Query:    50 TVDRRSANYQPSIWDHDFLQSLNSNYTDETYKRREEELKGKVMTTIKDVTEP-LNQLELI 108
             TV RRSANYQPS WDH  L S+ + +  +   R  + LK KV   + D  +  L+QLE I
Sbjct:    43 TVQRRSANYQPSRWDHHHLLSVENKFAKDKRVRERDLLKEKVRKMLNDEQKTYLDQLEFI 102

Query:   109 DSLQRLGLAYHFETEIRNILHDIYNSNNDYVWRKENLYATSLEFRLLRQHGYPVSQ 164
             D LQ+LG++YHFE EI NIL   Y  +   + ++ +L+AT+LEFRL RQHG+ VS+
Sbjct:   103 DDLQKLGVSYHFEAEIDNILTSSYKKDRTNI-QESDLHATALEFRLFRQHGFNVSE 157

GO:0000287 "magnesium ion binding" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0010333 "terpene synthase activity" evidence=IEA

GO:0016829 "lyase activity" evidence=IEA

GO:0016099 "monoterpenoid biosynthetic process" evidence=IDA

GO:0034768 "(E)-beta-ocimene synthase activity" evidence=IDA

GO:0050551 "myrcene synthase activity" evidence=IDA

GO:0080027 "response to herbivore" evidence=IEP

GO:0009611 "response to wounding" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0010093 "specification of floral organ identity" evidence=RCA

GO:0048440 "carpel development" evidence=RCA

GO:0048507 "meristem development" evidence=RCA

UNIPROTKB|Q8L5K4 Q8L5K4 "Gamma-terpinene synthase, chloroplastic" [Citrus limon (taxid:2708)]

 Score = 268 (99.4 bits), Expect = 2.1e-22, P = 2.1e-22
 Identities = 59/129 (45%), Positives = 87/129 (67%)

Query:    43 SAKYDNLTVDRRSANYQPSIWDHDFLQSLNSNYTDETYKRREEELKGKVMTTIKDVT--- 99
             S K  + T+ RRSA+Y P+IW  D++QSL+S Y  E+Y R+ E+LK +V   ++      
Sbjct:    46 SIKPVDQTIIRRSADYGPTIWSFDYIQSLDSKYKGESYARQLEKLKEQVSAMLQQDNKVV 105

Query:   100 --EPLNQLELIDSLQRLGLAYHFETEIRNILHDIYNSNNDYVWRKENLYATSLEFRLLRQ 157
               +PL+QLELID+L RLG++YHFE EI+  L  I+N N +     ++LYA +L+FR+LRQ
Sbjct:   106 DLDPLHQLELIDNLHRLGVSYHFEDEIKRTLDRIHNKNTN-----KSLYARALKFRILRQ 160

Query:   158 HGY--PVSQ 164
             +GY  PV +
Sbjct:   161 YGYKTPVKE 169

GO:0000287 "magnesium ion binding" evidence=IDA

GO:0010333 "terpene synthase activity" evidence=IDA

GO:0033383 "geranyl diphosphate metabolic process" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	164
pfam01397	177	pfam01397, Terpene_synth, Terpene synthase, N-term	7e-43
cd00684	542	cd00684, Terpene_cyclase_plant_C1, Plant Terpene C	9e-42
PLN02279	784	PLN02279, PLN02279, ent-kaur-16-ene synthase	4e-07
PLN02592	800	PLN02592, PLN02592, ent-copalyl diphosphate syntha	1e-06

>gnl|CDD|216477 pfam01397, Terpene_synth, Terpene synthase, N-terminal domain

 Score =  139 bits (354), Expect = 7e-43
 Identities = 49/104 (47%), Positives = 64/104 (61%), Gaps = 2/104 (1%)

Query: 63  WDHDFLQ-SLNSNYTDETYKRREEELKGKVMTTIKDVT-EPLNQLELIDSLQRLGLAYHF 120
           W  DFL  + +    DE    R E LK +V   +     + L QLELID+LQRLG++YHF
Sbjct: 1   WGDDFLSYTADMQTEDEKCLERLESLKEEVRKMLPSSYPDLLEQLELIDALQRLGISYHF 60

Query: 121 ETEIRNILHDIYNSNNDYVWRKENLYATSLEFRLLRQHGYPVSQ 164
           E EI+ IL  IY + +D    +++LY T+L FRLLRQHGY VS 
Sbjct: 61  EKEIKEILDQIYRNWDDNDEEEDDLYTTALAFRLLRQHGYDVSS 104

It has been suggested that this gene family be designated tps (for terpene synthase). It has been split into six subgroups on the basis of phylogeny, called tpsa-tpsf. tpsa includes vetispiridiene synthase, 5-epi- aristolochene synthase, and (+)-delta-cadinene synthase. tpsb includes (-)-limonene synthase. tpsc includes kaurene synthase A. tpsd includes taxadiene synthase, pinene synthase, and myrcene synthase. tpse includes kaurene synthase B. tpsf includes linalool synthase. Length = 177

>gnl|CDD|173832 cd00684, Terpene_cyclase_plant_C1, Plant Terpene Cyclases, Class 1

 Score =  145 bits (369), Expect = 9e-42
 Identities = 52/117 (44%), Positives = 73/117 (62%), Gaps = 5/117 (4%)

Query: 53  RRSANYQPSIWDHDFLQSLNSNYT-DETYKRREEELKGKVMTTIKD---VTEPLNQLELI 108
           R SAN+ PS+W  D   SL+S+Y+ ++  +   EELK +V   ++D     +   +L LI
Sbjct: 1   RPSANFPPSLWGDDHFLSLSSDYSEEDELEEEIEELKEEVRKMLEDSEYPVDLFERLWLI 60

Query: 109 DSLQRLGLAYHFETEIRNILHDIYNSNNDY-VWRKENLYATSLEFRLLRQHGYPVSQ 164
           D LQRLG++YHFE EI+ IL  IY    +     +++LY T+L FRLLRQHGY VS 
Sbjct: 61  DRLQRLGISYHFEDEIKEILDYIYRYWTERGESNEDDLYTTALGFRLLRQHGYNVSS 117

This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal region forms a cap over the catalytic core. Loss of diphosphate from the enzyme-bound substrate (GPP, FPP, or GGPP) results in an allylic carbocation that electrophilically attacks a double bond further down the terpene chain to effect the first ring closure. Unlike monoterpene, sesquiterene, and macrocyclic diterpenes synthases, which undergo substrate ionization by diphosphate ester scission, Tpsc-like diterpene synthases catalyze cyclization reactions by an initial protonation step producing a copalyl diphosphate intermediate. These enzymes lack the aspartate-rich sequences mentioned above. Most diterpene synthases have an N-terminal, internal element (approx 210 aa) whose function is unknown. Length = 542

>gnl|CDD|177918 PLN02279, PLN02279, ent-kaur-16-ene synthase

 Score = 48.0 bits (114), Expect = 4e-07
 Identities = 25/70 (35%), Positives = 43/70 (61%), Gaps = 10/70 (14%)

Query: 101 PLNQ---LELIDSLQRLGLAYHFETEIRNILHDIYNSNNDYVWRKENLYA----TSLEFR 153
           PL+Q   L ++D+L+RLG+  HF  EI+++L + Y     ++  +E ++      +L FR
Sbjct: 267 PLDQYARLSMVDTLERLGIDRHFRKEIKSVLDETYRY---WLQGEEEIFLDLATCALAFR 323

Query: 154 LLRQHGYPVS 163
           +LR +GY VS
Sbjct: 324 ILRLNGYDVS 333

Length = 784

>gnl|CDD|215321 PLN02592, PLN02592, ent-copalyl diphosphate synthase

 Score = 46.8 bits (111), Expect = 1e-06
 Identities = 23/62 (37%), Positives = 37/62 (59%), Gaps = 6/62 (9%)

Query: 108 IDSLQRLGLAYHFETEIRNILHDI--YNSNNDYVWRK----ENLYATSLEFRLLRQHGYP 161
           +D LQRLG++ +FE EI+  +  +  Y + N   W +     ++  T++ FRLLR HG+ 
Sbjct: 317 VDRLQRLGISRYFEPEIKECIDYVHRYWTENGICWARNSHVHDIDDTAMGFRLLRLHGHQ 376

Query: 162 VS 163
           VS
Sbjct: 377 VS 378

Length = 800

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	164
PF01397	183	Terpene_synth: Terpene synthase, N-terminal domain	100.0
cd00684	542	Terpene_cyclase_plant_C1 Plant Terpene Cyclases, C	100.0
PLN02279	784	ent-kaur-16-ene synthase	100.0
PLN02592	800	ent-copalyl diphosphate synthase	100.0

>PF01397 Terpene_synth: Terpene synthase, N-terminal domain; InterPro: IPR001906 Sequences containing this domain belong to the terpene synthase family

Probab=100.00  E-value=2e-36  Score=241.82  Aligned_cols=102  Identities=55%  Similarity=0.890  Sum_probs=84.9

Q ss_pred             CcccccccCCCCCc------hHHHHHHHHHHHHHhcccccccc-cccchhhHHHHHHHhCcccchHHHHHHHHHHHHhcc
Q 048547           63 WDHDFLQSLNSNYT------DETYKRREEELKGKVMTTIKDVT-EPLNQLELIDSLQRLGLAYHFETEIRNILHDIYNSN  135 (164)
Q Consensus        63 W~~~fl~sl~~~~~------~~~~~~~~e~LKeeVr~ml~~~~-d~~e~L~lID~LQRLGIsyhFe~EI~~~L~~i~~~~  135 (164)
                      |||.|++++.+.+.      .+++.+++++||++||+|+.... |+.++|+|||+||||||+|||++||+++|+++|+.+
T Consensus         1 W~d~fl~s~s~~~~~~~~~~~~~~~~~~~~Lk~~v~~~l~~~~~d~~~~L~lID~lqRLGi~yhFe~EI~~~L~~i~~~~   80 (183)
T PF01397_consen    1 WGDDFLQSLSPSYTACMQSEDEKCKERAEELKEEVRNMLPASYPDPLEKLELIDTLQRLGISYHFEDEIKEILDSIYRSW   80 (183)
T ss_dssp             TTHHHHHHTBHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHTT
T ss_pred             CCCceecCCCCcchhccchhHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhhc
Confidence            99999965443333      37889999999999999998754 899999999999999999999999999999999987


Q ss_pred             CCcCCCCCChHHHHHHHHHhhhCCCCCCC
Q 048547          136 NDYVWRKENLYATSLEFRLLRQHGYPVSQ  164 (164)
Q Consensus       136 ~~~~~~~~DL~~~AL~FRLLRqhGY~VS~  164 (164)
                      ...+....|||+|||+|||||||||+|||
T Consensus        81 ~~~~~~~~dL~~~AL~FRLLRqhGy~VS~  109 (183)
T PF01397_consen   81 DEDNEEIDDLYTTALRFRLLRQHGYYVSS  109 (183)
T ss_dssp             TTTSHTSSCHHHHHHHHHHHHHTT----G
T ss_pred             cccccccCchhHHHHHHHHHHHcCCcccH
Confidence            76432235999999999999999999996

It has been suggested that this gene family be designated tps (for terpene synthase). Sequence comparisons reveal similarities between the monoterpene (C10) synthases, sesquiterpene (C15) synthases and the diterpene (C20) synthases. It has been split into six subgroups on the basis of phylogeny, called Tpsa-Tpsf []. Tpsa includes vetispiridiene synthase Q39979 from SWISSPROT, 5-epi- aristolochene synthase, Q40577 from SWISSPROT and (+)-delta-cadinene synthase P93665 from SWISSPROT . Tpsb includes (-)-limonene synthase, Q40322 from SWISSPROT. Tpsc includes copalyl diphosphate synthase (kaurene synthase A), O04408 from SWISSPROT. Tpsd includes taxadiene synthase, Q41594 from SWISSPROT, pinene synthase, O24475 from SWISSPROT and myrcene synthase, O24474 from SWISSPROT. Tpse includes ent-kaurene synthase B Q39548 from SWISSPROT. Tpsf includes linalool synthase Q9ZPN5 from SWISSPROT. In the fungus Phaeosphaeria sp. (strain L487) the synthesis of ent-kaurene from geranylgeranyl dophosphate is promoted by a single bifunctional protein [].; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 2ONH_A 2ONG_B 3P5R_A 3P5P_A 3N0F_A 3N0G_B 3PYB_A 3PYA_A 3G4F_A 3G4D_B ....

>cd00684 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, Class 1

Probab=100.00  E-value=1e-34  Score=263.31  Aligned_cols=112  Identities=47%  Similarity=0.780  Sum_probs=96.9

Q ss_pred             CCCCCCCCCCCcccccccCCCCCchH-HHHHHHHHHHHHhcccccc---cccccchhhHHHHHHHhCcccchHHHHHHHH
Q 048547           53 RRSANYQPSIWDHDFLQSLNSNYTDE-TYKRREEELKGKVMTTIKD---VTEPLNQLELIDSLQRLGLAYHFETEIRNIL  128 (164)
Q Consensus        53 r~~a~~~PsiW~~~fl~sl~~~~~~~-~~~~~~e~LKeeVr~ml~~---~~d~~e~L~lID~LQRLGIsyhFe~EI~~~L  128 (164)
                      |+.++|+|++||+.+++++..++... .+.+++++||++||+|+..   +.|++++|++||+||||||+|||++||+++|
T Consensus         1 r~~~~~~~~~w~~~~~~s~~~~~~~~~~~~~~~~~lk~~v~~~~~~~~~~~~~~~~l~liD~lqrLGi~~hF~~EI~~~L   80 (542)
T cd00684           1 RPSANFPPSLWGDDHFLSLSSDYSEEDELEEEIEELKEEVRKMLEDSEYPVDLFERLWLIDRLQRLGISYHFEDEIKEIL   80 (542)
T ss_pred             CCCCCCCCCcCCCcceeecCCCcchhHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHcCchhhhHHHHHHHH
Confidence            67899999999995555555544443 7889999999999999976   6799999999999999999999999999999


Q ss_pred             HHHHhccCCcC-CCCCChHHHHHHHHHhhhCCCCCCC
Q 048547          129 HDIYNSNNDYV-WRKENLYATSLEFRLLRQHGYPVSQ  164 (164)
Q Consensus       129 ~~i~~~~~~~~-~~~~DL~~~AL~FRLLRqhGY~VS~  164 (164)
                      ++||+.|...+ ....|||+|||+|||||||||+|||
T Consensus        81 ~~i~~~~~~~~~~~~~dl~~~al~FRlLR~~Gy~vs~  117 (542)
T cd00684          81 DYIYRYWTERGESNEDDLYTTALGFRLLRQHGYNVSS  117 (542)
T ss_pred             HHHHHhhcccccccCCCHHHHHHHHHHHHHcCCCcCH
Confidence            99999876532 2237999999999999999999996

This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal regi

>PLN02279 ent-kaur-16-ene synthase

Probab=100.00  E-value=2.7e-34  Score=269.24  Aligned_cols=132  Identities=24%  Similarity=0.313  Sum_probs=108.2

Q ss_pred             CCchhHhhhcCCCCCChhhHHHHHHhhhcCCCeeeccCcccccccccCCCCCCCCCCCcccccccCCCCCchHHHHHHHH
Q 048547            6 NPSTLVTSVNGFKCLPLATNKAAIRIMAKNKPVQCLVSAKYDNLTVDRRSANYQPSIWDHDFLQSLNSNYTDETYKRREE   85 (164)
Q Consensus         6 ~p~~~~~~~eg~~~~~~~~w~~~~~~~~~~gs~~~s~s~~~~~~~~~r~~a~~~PsiW~~~fl~sl~~~~~~~~~~~~~e   85 (164)
                      .|+||+||+|||+++  +||++++++|++||||++|||+  ||..                +++.     .++.+....+
T Consensus       198 ~~~~l~~s~Egl~~~--~dw~~v~~~q~~~Gs~~~SPsa--TAa~----------------l~~~-----~~~~~~~yL~  252 (784)
T PLN02279        198 REAYLAYVSEGIGKL--QDWEMVMKYQRKNGSLFNSPST--TAAA----------------FSHL-----QNAGCLRYLR  252 (784)
T ss_pred             CcchHHHHHhhcccc--ccHHHHHhhcCCCCCcccCcHH--HHHH----------------HHcc-----CChHHHHHHH
Confidence            699999999999998  5999999999999999999999  8733                3322     1233333333


Q ss_pred             ----HHHHHhcccccccccccchhhHHHHHHHhCcccchHHHHHHHHHHHHhccCCcCC-CCCChHHHHHHHHHhhhCCC
Q 048547           86 ----ELKGKVMTTIKDVTEPLNQLELIDSLQRLGLAYHFETEIRNILHDIYNSNNDYVW-RKENLYATSLEFRLLRQHGY  160 (164)
Q Consensus        86 ----~LKeeVr~ml~~~~d~~e~L~lID~LQRLGIsyhFe~EI~~~L~~i~~~~~~~~~-~~~DL~~~AL~FRLLRqhGY  160 (164)
                          +....|+.++  +.+.++++|+||+||||||+|||++||+++|+++|+.|...+. ...|||+|||+|||||||||
T Consensus       253 ~~~~~~~g~vP~~y--p~~~fe~l~lvd~L~rlGi~~hF~~EI~~~L~~~~~~~~~~~~~~~~Dl~~tAl~FRLLR~hGy  330 (784)
T PLN02279        253 SLLQKFGNAVPTVY--PLDQYARLSMVDTLERLGIDRHFRKEIKSVLDETYRYWLQGEEEIFLDLATCALAFRILRLNGY  330 (784)
T ss_pred             HHHHhcCCCCCCCC--cccHHHHhHHHHHHHHhCCccccHHHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHcCC
Confidence                3335577777  4789999999999999999999999999999999997764211 12699999999999999999


Q ss_pred             CCCC
Q 048547          161 PVSQ  164 (164)
Q Consensus       161 ~VS~  164 (164)
                      +|||
T Consensus       331 ~VS~  334 (784)
T PLN02279        331 DVSS  334 (784)
T ss_pred             CCCh
Confidence            9996

>PLN02592 ent-copalyl diphosphate synthase

Probab=100.00  E-value=2.8e-33  Score=262.25  Aligned_cols=131  Identities=25%  Similarity=0.415  Sum_probs=106.8

Q ss_pred             CCchhHhhhcCCCCCChhhHHHHHHhhhcCCCeeeccCcccccccccCCCCCCCCCCCcccccccCCCCCchHHHHHH--
Q 048547            6 NPSTLVTSVNGFKCLPLATNKAAIRIMAKNKPVQCLVSAKYDNLTVDRRSANYQPSIWDHDFLQSLNSNYTDETYKRR--   83 (164)
Q Consensus         6 ~p~~~~~~~eg~~~~~~~~w~~~~~~~~~~gs~~~s~s~~~~~~~~~r~~a~~~PsiW~~~fl~sl~~~~~~~~~~~~--   83 (164)
                      +|+||+||+|||+++   ||++++++|++||||++|||+  ||...                ++.     .++.+.+.  
T Consensus       239 ~p~~llhslEgl~~~---dw~~v~~~q~~~GS~~~SPSa--TAaaL----------------~~~-----~d~~cl~YL~  292 (800)
T PLN02592        239 VPTTLLHSLEGMPGL---DWEKLLKLQCQDGSFLFSPSS--TAFAL----------------MQT-----KDENCLEYLN  292 (800)
T ss_pred             CcchHHHHHhccccC---CHHHHhcccCCCCCccCCchH--HHHHH----------------hcc-----CchHHHHHHH
Confidence            799999999999986   999999999999999999999  87432                221     12233333  


Q ss_pred             --HHHHHHHhcccccccccccchhhHHHHHHHhCcccchHHHHHHHHHHHHhccCCcC--C--C--CCChHHHHHHHHHh
Q 048547           84 --EEELKGKVMTTIKDVTEPLNQLELIDSLQRLGLAYHFETEIRNILHDIYNSNNDYV--W--R--KENLYATSLEFRLL  155 (164)
Q Consensus        84 --~e~LKeeVr~ml~~~~d~~e~L~lID~LQRLGIsyhFe~EI~~~L~~i~~~~~~~~--~--~--~~DL~~~AL~FRLL  155 (164)
                        +.+....|+.++  +.+++++|++||+||||||+|||++||+++|+++|+.|...+  +  +  ..|+++|||+||||
T Consensus       293 ~~~~k~~GgVP~vy--P~d~fE~LwlVDtLqRLGIs~hF~~EI~~iLd~iy~~w~~~g~~~a~~~~~~Dld~TALaFRLL  370 (800)
T PLN02592        293 KAVQRFNGGVPNVY--PVDLFEHIWAVDRLQRLGISRYFEPEIKECIDYVHRYWTENGICWARNSHVHDIDDTAMGFRLL  370 (800)
T ss_pred             HHHHHcCCCCCCCC--CCcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHHhhcCcccccCCCcCCHHHHHHHHHHH
Confidence              334445677777  478999999999999999999999999999999999665422  1  1  26999999999999


Q ss_pred             hhCCCCCCC
Q 048547          156 RQHGYPVSQ  164 (164)
Q Consensus       156 RqhGY~VS~  164 (164)
                      |||||+|||
T Consensus       371 RqhGy~VS~  379 (800)
T PLN02592        371 RLHGHQVSA  379 (800)
T ss_pred             HHcCCCCCh
Confidence            999999996

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	164
1n1b_A	549	Crystal Structure Of (+)-bornyl Diphosphate Synthas		1e-23
2ong_A	543	Crystal Structure Of Of Limonene Synthase With 2- F		9e-22
3n0f_A	555	Crystal Structure Of Isoprene Synthase From Grey Po		1e-21
2j5c_A	569	Rational Conversion Of Substrate And Product Specif		3e-19
3g4d_A	554	Crystal Structure Of (+)-Delta-Cadinene Synthase Fr		5e-19
1hx9_A	548	Crystal Structure Of Teas W273s Form 1 Length = 548		1e-15
5eau_A	548	5-Epi-Aristolochene Synthase From Nicotiana Tabacum		1e-15
4di5_A	535	Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synt		1e-15
3m01_A	550	The Crystal Structure Of 5-Epi-Aristolochene Syntha		1e-15
1hxc_A	548	Crystal Structure Of Teas C440w Length = 548		1e-15
1hxg_A	548	Crystal Structure Of Teas W273sC440W Length = 548		1e-15
3lz9_A	550	The Crystal Structure Of 5-Epi-Aristolochene Syntha		1e-15
5eas_A	548	5-Epi-Aristolochene Synthase From Nicotiana Tabacum		3e-15
5eat_A	548	5-Epi-Aristolochene Synthase From Nicotiana Tabacum		3e-15
3pya_A	727	Crystal Structure Of Ent-Copalyl Diphosphate Syntha		2e-07
3p5p_A	764	Crystal Structure Of Taxadiene Synthase From Pacifi		1e-05
3sae_A	817	Structure Of A Three-Domain Sesquiterpene Synthase:		3e-05
3s9v_A	785	Abietadiene Synthase From Abies Grandis Length = 78		1e-04

>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From Sage Length = 549

Iteration: 1
 Score =  105 bits (263), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 57/117 (48%), Positives = 79/117 (67%), Gaps = 7/117 (5%)
Query: 53  RRSANYQPSIWDHDFLQSLNSNYTDETYKRREEELKGKVMTTIKDVTEPLNQLELIDSLQ 112
           RRS NYQP++WD +++QSLN+ YT+E +  R+ EL  +V   +K+  EP+ QLELI  L+
Sbjct: 6   RRSGNYQPALWDSNYIQSLNTPYTEERHLDRKAELIVQVRILLKEKMEPVQQLELIHDLK 65
Query: 113 RLGLAYHFETEIRNILHDIYNS-----NNDYVWRKENLYATSLEFRLLRQHGYPVSQ 164
            LGL+  F+ EI+ IL  IYN      NN+    K +LY T+L FRLLRQHG+ +SQ
Sbjct: 66  YLGLSDFFQDEIKEILGVIYNEHKCFHNNEV--EKMDLYFTALGFRLLRQHGFNISQ 120

>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2- Fluorogeranyl Diphosphate (Fgpp). Length = 543

Iteration: 1
 Score = 99.4 bits (246), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 53/116 (45%), Positives = 75/116 (64%), Gaps = 4/116 (3%)
Query: 53  RRSANYQPSIWDHDFLQSLNSNYTDETYKRREEELKGKVMTTIKDVTEPLNQLELIDSLQ 112
           RRS NY PS WD +F+QSL S+Y ++ +  R  EL   V   ++  T+ + QLELID LQ
Sbjct: 2   RRSGNYNPSRWDVNFIQSLLSDYKEDKHVIRASELVTLVKMELEKETDQIRQLELIDDLQ 61
Query: 113 RLGLAYHFETEIRNILHDIYNSN----NDYVWRKENLYATSLEFRLLRQHGYPVSQ 164
           R+GL+ HF+ E + IL  IY  +    N +   + +LY+TSL FRLLR+HG+ V+Q
Sbjct: 62  RMGLSDHFQNEFKEILSSIYLDHHYYKNPFPKEERDLYSTSLAFRLLREHGFQVAQ 117

>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar Leaves (Populus X Canescens) Length = 555

Iteration: 1
 Score = 98.6 bits (244), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 53/113 (46%), Positives = 76/113 (67%), Gaps = 1/113 (0%)
Query: 53  RRSANYQPSIWDHDFLQSLNSNYTDETYKRREEELKGKVMTTIK-DVTEPLNQLELIDSL 111
           RRSA+Y+P+ WD+DFL S +++ + E YK + ++L+ +V   I  +  E L  LELID++
Sbjct: 15  RRSADYEPNSWDYDFLLSSDTDESIEVYKDKAKKLEAEVRREINNEKAEFLTLLELIDNV 74
Query: 112 QRLGLAYHFETEIRNILHDIYNSNNDYVWRKENLYATSLEFRLLRQHGYPVSQ 164
           QRLGL Y FE++IR  L    +S       K +L+AT+L FRLLRQHG+ VSQ
Sbjct: 75  QRLGLGYRFESDIRRALDRFVSSGGFDGVTKTSLHATALSFRLLRQHGFEVSQ 127

>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity In A Monoterpene Synthase. Structural Insights Into The Molecular Basis Of Rapid Evolution. Length = 569

Iteration: 1
 Score = 90.9 bits (224), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 45/111 (40%), Positives = 72/111 (64%), Gaps = 2/111 (1%)
Query: 54  RSANYQPSIWDHDFLQSLNSNYTDETYKRREEELKGKVMTTIKDVTEPLNQLELIDSLQR 113
           R+  YQP++WD   +QS +S Y +E +  R   +  +V   +++  + + +LELID L+R
Sbjct: 36  RTGGYQPTLWDFSTIQSFDSEYKEEKHLMRAAGMIDQVKMMLQEEVDSIRRLELIDDLRR 95
Query: 114 LGLAYHFETEIRNILHDIYNSNNDYVWRKENLYATSLEFRLLRQHGYPVSQ 164
           LG++ HFE EI  IL+  Y +NN+    + +LY+T+L FRLLRQ+ + VSQ
Sbjct: 96  LGISCHFEREIVEILNSKYYTNNEI--DERDLYSTALRFRLLRQYDFSVSQ 144

>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From Gossypium Arboreum And Evolutionary Divergence Of Metal Binding Motifs For Catalysis Length = 554

Iteration: 1
 Score = 90.1 bits (222), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 50/114 (43%), Positives = 73/114 (64%), Gaps = 9/114 (7%)
Query: 53  RRSANYQPSIWDHDFLQSLNSNYTDETYKRRE---EELKGKVMTTIKDVTEPLNQLELID 109
           R  A++QPSIW   FL   + N   ET KR +   EE++  ++  + + T+   +L  ID
Sbjct: 22  RPKADFQPSIWGDLFLNCPDKNIDAETEKRHQQLKEEVRKMIVAPMANSTQ---KLAFID 78
Query: 110 SLQRLGLAYHFETEIRNILHDIYNSNNDYVWRKENLYATSLEFRLLRQHGYPVS 163
           S+QRLG++YHF  EI + L +IY++NND    + +LY TS+ FRLLR+HGY VS
Sbjct: 79  SVQRLGVSYHFTKEIEDELENIYHNNND---AENDLYTTSIRFRLLREHGYNVS 129

>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1 Length = 548

Iteration: 1
 Score = 79.0 bits (193), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 44/112 (39%), Positives = 65/112 (58%), Gaps = 5/112 (4%)
Query: 53  RRSANYQPSIWDHDFLQSLNSNYTDETYKRREEELKGKVMTTIKDVTEPL-NQLELIDSL 111
           R  A++ PS+W   FL     N   E Y +  E LK +    +      L + L LID++
Sbjct: 15  RPVADFSPSLWGDQFLSFSIDNQVAEKYAKEIEALKEQTRNMLLATGMKLADTLNLIDTI 74
Query: 112 QRLGLAYHFETEIRNILHDIYNSNNDYVWRKENLYATSLEFRLLRQHGYPVS 163
           +RLG++YHFE EI +IL  IYN N++      +L  ++L+FRLLRQHG+ +S
Sbjct: 75  ERLGISYHFEKEIDDILDQIYNQNSNC----NDLCTSALQFRLLRQHGFNIS 122

>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum Length = 548

Iteration: 1
 Score = 78.6 bits (192), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 44/112 (39%), Positives = 65/112 (58%), Gaps = 5/112 (4%)
Query: 53  RRSANYQPSIWDHDFLQSLNSNYTDETYKRREEELKGKVMTTIKDVTEPL-NQLELIDSL 111
           R  A++ PS+W   FL     N   E Y +  E LK +    +      L + L LID++
Sbjct: 15  RPVADFSPSLWGDQFLSFSIDNQVAEKYAKEIEALKEQTRNMLLATGMKLADTLNLIDTI 74
Query: 112 QRLGLAYHFETEIRNILHDIYNSNNDYVWRKENLYATSLEFRLLRQHGYPVS 163
           +RLG++YHFE EI +IL  IYN N++      +L  ++L+FRLLRQHG+ +S
Sbjct: 75  ERLGISYHFEKEIDDILDQIYNQNSNC----NDLCTSALQFRLLRQHGFNIS 122

>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase From Nicotiana Tobaccum With Geraniline Length = 535

Iteration: 1
 Score = 78.6 bits (192), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 44/112 (39%), Positives = 65/112 (58%), Gaps = 5/112 (4%)
Query: 53  RRSANYQPSIWDHDFLQSLNSNYTDETYKRREEELKGKVMTTIKDVTEPL-NQLELIDSL 111
           R  A++ PS+W   FL     N   E Y +  E LK +    +      L + L LID++
Sbjct: 2   RPVADFSPSLWGDQFLSFSIKNQVAEKYAKEIEALKEQTRNMLLATGMKLADTLNLIDTI 61
Query: 112 QRLGLAYHFETEIRNILHDIYNSNNDYVWRKENLYATSLEFRLLRQHGYPVS 163
           +RLG++YHFE EI +IL  IYN N++      +L  ++L+FRLLRQHG+ +S
Sbjct: 62  ERLGISYHFEKEIDDILDQIYNQNSNC----NDLCTSALQFRLLRQHGFNIS 109

>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl Diphosphate Length = 550

Iteration: 1
 Score = 78.6 bits (192), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 44/112 (39%), Positives = 65/112 (58%), Gaps = 5/112 (4%)
Query: 53  RRSANYQPSIWDHDFLQSLNSNYTDETYKRREEELKGKVMTTIKDVTEPL-NQLELIDSL 111
           R  A++ PS+W   FL     N   E Y +  E LK +    +      L + L LID++
Sbjct: 17  RPVADFSPSLWGDQFLSFSIKNQVAEKYAKEIEALKEQTRNMLLATGMKLADTLNLIDTI 76
Query: 112 QRLGLAYHFETEIRNILHDIYNSNNDYVWRKENLYATSLEFRLLRQHGYPVS 163
           +RLG++YHFE EI +IL  IYN N++      +L  ++L+FRLLRQHG+ +S
Sbjct: 77  ERLGISYHFEKEIDDILDQIYNQNSNC----NDLCTSALQFRLLRQHGFNIS 124

>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w Length = 548

Iteration: 1
 Score = 78.6 bits (192), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 44/112 (39%), Positives = 65/112 (58%), Gaps = 5/112 (4%)
Query: 53  RRSANYQPSIWDHDFLQSLNSNYTDETYKRREEELKGKVMTTIKDVTEPL-NQLELIDSL 111
           R  A++ PS+W   FL     N   E Y +  E LK +    +      L + L LID++
Sbjct: 15  RPVADFSPSLWGDQFLSFSIDNQVAEKYAKEIEALKEQTRNMLLATGMKLADTLNLIDTI 74
Query: 112 QRLGLAYHFETEIRNILHDIYNSNNDYVWRKENLYATSLEFRLLRQHGYPVS 163
           +RLG++YHFE EI +IL  IYN N++      +L  ++L+FRLLRQHG+ +S
Sbjct: 75  ERLGISYHFEKEIDDILDQIYNQNSNC----NDLCTSALQFRLLRQHGFNIS 122

>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W Length = 548

Iteration: 1
 Score = 78.6 bits (192), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 44/112 (39%), Positives = 65/112 (58%), Gaps = 5/112 (4%)
Query: 53  RRSANYQPSIWDHDFLQSLNSNYTDETYKRREEELKGKVMTTIKDVTEPL-NQLELIDSL 111
           R  A++ PS+W   FL     N   E Y +  E LK +    +      L + L LID++
Sbjct: 15  RPVADFSPSLWGDQFLSFSIDNQVAEKYAKEIEALKEQTRNMLLATGMKLADTLNLIDTI 74
Query: 112 QRLGLAYHFETEIRNILHDIYNSNNDYVWRKENLYATSLEFRLLRQHGYPVS 163
           +RLG++YHFE EI +IL  IYN N++      +L  ++L+FRLLRQHG+ +S
Sbjct: 75  ERLGISYHFEKEIDDILDQIYNQNSNC----NDLCTSALQFRLLRQHGFNIS 122

>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4 Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl Diphospha Length = 550

Iteration: 1
 Score = 78.6 bits (192), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 44/112 (39%), Positives = 65/112 (58%), Gaps = 5/112 (4%)
Query: 53  RRSANYQPSIWDHDFLQSLNSNYTDETYKRREEELKGKVMTTIKDVTEPL-NQLELIDSL 111
           R  A++ PS+W   FL     N   E Y +  E LK +    +      L + L LID++
Sbjct: 17  RPVADFSPSLWGDQFLSFSIKNQVAEKYAKEIEALKEQTRNMLLATGMKLADTLNLIDTI 76
Query: 112 QRLGLAYHFETEIRNILHDIYNSNNDYVWRKENLYATSLEFRLLRQHGYPVS 163
           +RLG++YHFE EI +IL  IYN N++      +L  ++L+FRLLRQHG+ +S
Sbjct: 77  ERLGISYHFEKEIDDILDQIYNQNSNC----NDLCTSALQFRLLRQHGFNIS 124

>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum Length = 548

Iteration: 1
 Score = 77.8 bits (190), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 44/112 (39%), Positives = 64/112 (57%), Gaps = 5/112 (4%)
Query: 53  RRSANYQPSIWDHDFLQSLNSNYTDETYKRREEELKGKVMTTIKDVTEPL-NQLELIDSL 111
           R  A++ PS+W   FL     N   E Y +  E LK +  + +      L + L LID +
Sbjct: 15  RPVADFSPSLWGDQFLSFSIDNQVAEKYAQEIEALKEQTRSMLLATGRKLADTLNLIDII 74
Query: 112 QRLGLAYHFETEIRNILHDIYNSNNDYVWRKENLYATSLEFRLLRQHGYPVS 163
           +RLG++YHFE EI  IL  IYN N++      +L  ++L+FRLLRQHG+ +S
Sbjct: 75  ERLGISYHFEKEIDEILDQIYNQNSNC----NDLCTSALQFRLLRQHGFNIS 122

>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With Substrate Analog Farnesyl Hydroxyphosphonate Length = 548

Iteration: 1
 Score = 77.8 bits (190), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 44/112 (39%), Positives = 64/112 (57%), Gaps = 5/112 (4%)
Query: 53  RRSANYQPSIWDHDFLQSLNSNYTDETYKRREEELKGKVMTTIKDVTEPL-NQLELIDSL 111
           R  A++ PS+W   FL     N   E Y +  E LK +  + +      L + L LID +
Sbjct: 15  RPVADFSPSLWGDQFLSFSIDNQVAEKYAQEIEALKEQTRSMLLATGRKLADTLNLIDII 74
Query: 112 QRLGLAYHFETEIRNILHDIYNSNNDYVWRKENLYATSLEFRLLRQHGYPVS 163
           +RLG++YHFE EI  IL  IYN N++      +L  ++L+FRLLRQHG+ +S
Sbjct: 75  ERLGISYHFEKEIDEILDQIYNQNSNC----NDLCTSALQFRLLRQHGFNIS 122

>pdb|3PYA|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From Arabidopsis Thaliana In Complex With (S)-15-Aza-14,15-Dihydrogeranylgeranyl Thiolodiphosphate Length = 727

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 58/112 (51%), Gaps = 9/112 (8%)
Query: 58  YQPSIWDHDFLQSLNSNYTDETYKRREEELKGKVMTTIKDVTEPLNQLELIDSLQRLGLA 117
           + PS     F+Q+ +SN   E  +   +   G V        +    + ++D LQRLG++
Sbjct: 205 FSPSSTAFAFMQTRDSNCL-EYLRNAVKRFNGGVPNVFP--VDLFEHIWIVDRLQRLGIS 261
Query: 118 YHFETEIRNILHDI--YNSNNDYVWRK----ENLYATSLEFRLLRQHGYPVS 163
            +FE EI+  L  +  Y ++N   W +    +++  T++ FRLLRQHGY VS
Sbjct: 262 RYFEEEIKECLDYVHRYWTDNGICWARCSHVQDIDDTAMAFRLLRQHGYQVS 313

>pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew (Taxus Brevifolia) In Complex With Mg2+ And 13-Aza-13,14-Dihydrocopalyl Diphosphate Length = 764

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 6/68 (8%)
Query: 102 LNQLELIDSLQRLGLAYHFETEIRNILHDIYN--SNNDYVWRKENLY----ATSLEFRLL 155
           L +L L+D+++ LG+  HF+ EI+  L  +Y   S     W +++L      T+L  R L
Sbjct: 247 LERLSLVDNIEHLGIGRHFKQEIKGALDYVYRHWSERGIGWGRDSLVPDLNTTALGLRTL 306
Query: 156 RQHGYPVS 163
           R HGY VS
Sbjct: 307 RMHGYNVS 314

>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A Prospective Target For Advanced Biofuels Production Length = 817

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 6/68 (8%)
Query: 102 LNQLELIDSLQRLGLAYHFETEIRNILHDIYNSNND--YVWRKEN----LYATSLEFRLL 155
           L +L ++D++ RLG+  HFE EI+  L  +Y   N+    W + N    L  T+L FRLL
Sbjct: 299 LERLLIVDNIVRLGIYRHFEKEIKEALDYVYRHWNERGIGWGRLNPIADLETTALGFRLL 358
Query: 156 RQHGYPVS 163
           R H Y VS
Sbjct: 359 RLHRYNVS 366

>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis Length = 785

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 9/72 (12%)
Query: 101 PLNQLE---LIDSLQRLGLAYHFETEIRNILHDIYNSNND--YVWRKEN----LYATSLE 151
           PL+  E    +D+++RLG+  HF+ EI+  L  +Y+  ++    W +EN    +  T++ 
Sbjct: 267 PLDLFERLWAVDTVERLGIDRHFKEEIKEALDYVYSHWDERGIGWARENPVPDIDDTAMG 326
Query: 152 FRLLRQHGYPVS 163
            R+LR HGY VS
Sbjct: 327 LRILRLHGYNVS 338

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	164
2j5c_A	569	1,8-cineole synthase; terpene synthases, 1, monote	9e-43
2ong_A	543	4S-limonene synthase; monoterpene synthase, monote	3e-38
1n1b_A	549	(+)-bornyl diphosphate synthase; terpene synthase	1e-37
3n0f_A	555	Isoprene synthase; terpene cyclase fold, hemiterpe	1e-37
3m00_A	550	Aristolochene synthase; plant terpenoid cyclase, l	4e-36
3g4d_A	554	(+)-delta-cadinene synthase isozyme XC1; cyclase,	4e-35
3pya_A	727	ENT-copalyl diphosphate synthase, chloroplastic; c	4e-27
3p5p_A	764	Taxadiene synthase; class I and II terpene cyclase	8e-19
3sdr_A	817	Alpha-bisabolene synthase; lyase, terpene synthase	1e-18
3sdr_A	817	Alpha-bisabolene synthase; lyase, terpene synthase	4e-13
3s9v_A	785	Abietadiene synthase, chloroplastic; alpha bundle/	2e-18

>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa} Length = 569

 Score =  148 bits (374), Expect = 9e-43
 Identities = 51/135 (37%), Positives = 80/135 (59%), Gaps = 4/135 (2%)

Query: 32  MAKNKPVQCLVSAKYDNLTVD--RRSANYQPSIWDHDFLQSLNSNYTDETYKRREEELKG 89
           MA     Q +    YD+   D   R+  YQP++WD   +QS +S Y +E +  R   +  
Sbjct: 12  MASMTGGQQMGRDLYDDDDKDRWIRTGGYQPTLWDFSTIQSFDSEYKEEKHLMRAAGMID 71

Query: 90  KVMTTIKDVTEPLNQLELIDSLQRLGLAYHFETEIRNILHDIYNSNNDYVWRKENLYATS 149
           +V   +++  + + +LELID L+RLG++ HFE EI  IL+  Y +NN+    + +LY+T+
Sbjct: 72  QVKMMLQEEVDSIRRLELIDDLRRLGISCHFEREIVEILNSKYYTNNE--IDERDLYSTA 129

Query: 150 LEFRLLRQHGYPVSQ 164
           L FRLLRQ+ + VSQ
Sbjct: 130 LRFRLLRQYDFSVSQ 144

>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A* Length = 543

 Score =  136 bits (342), Expect = 3e-38
 Identities = 53/116 (45%), Positives = 75/116 (64%), Gaps = 4/116 (3%)

Query: 53  RRSANYQPSIWDHDFLQSLNSNYTDETYKRREEELKGKVMTTIKDVTEPLNQLELIDSLQ 112
           RRS NY PS WD +F+QSL S+Y ++ +  R  EL   V   ++  T+ + QLELID LQ
Sbjct: 2   RRSGNYNPSRWDVNFIQSLLSDYKEDKHVIRASELVTLVKMELEKETDQIRQLELIDDLQ 61

Query: 113 RLGLAYHFETEIRNILHDIYNSN----NDYVWRKENLYATSLEFRLLRQHGYPVSQ 164
           R+GL+ HF+ E + IL  IY  +    N +   + +LY+TSL FRLLR+HG+ V+Q
Sbjct: 62  RMGLSDHFQNEFKEILSSIYLDHHYYKNPFPKEERDLYSTSLAFRLLREHGFQVAQ 117

>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A* Length = 549

 Score =  134 bits (338), Expect = 1e-37
 Identities = 55/115 (47%), Positives = 79/115 (68%), Gaps = 3/115 (2%)

Query: 53  RRSANYQPSIWDHDFLQSLNSNYTDETYKRREEELKGKVMTTIKDVTEPLNQLELIDSLQ 112
           RRS NYQP++WD +++QSLN+ YT+E +  R+ EL  +V   +K+  EP+ QLELI  L+
Sbjct: 6   RRSGNYQPALWDSNYIQSLNTPYTEERHLDRKAELIVQVRILLKEKMEPVQQLELIHDLK 65

Query: 113 RLGLAYHFETEIRNILHDIYNSN---NDYVWRKENLYATSLEFRLLRQHGYPVSQ 164
            LGL+  F+ EI+ IL  IYN +   ++    K +LY T+L FRLLRQHG+ +SQ
Sbjct: 66  YLGLSDFFQDEIKEILGVIYNEHKCFHNNEVEKMDLYFTALGFRLLRQHGFNISQ 120

>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A* Length = 555

 Score =  134 bits (337), Expect = 1e-37
 Identities = 53/119 (44%), Positives = 78/119 (65%), Gaps = 1/119 (0%)

Query: 47  DNLTVDRRSANYQPSIWDHDFLQSLNSNYTDETYKRREEELKGKVMTTIKDVT-EPLNQL 105
            + +  RRSA+Y+P+ WD+DFL S +++ + E YK + ++L+ +V   I +   E L  L
Sbjct: 9   HHGSEARRSADYEPNSWDYDFLLSSDTDESIEVYKDKAKKLEAEVRREINNEKAEFLTLL 68

Query: 106 ELIDSLQRLGLAYHFETEIRNILHDIYNSNNDYVWRKENLYATSLEFRLLRQHGYPVSQ 164
           ELID++QRLGL Y FE++IR  L    +S       K +L+AT+L FRLLRQHG+ VSQ
Sbjct: 69  ELIDNVQRLGLGYRFESDIRRALDRFVSSGGFDGVTKTSLHATALSFRLLRQHGFEVSQ 127

>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A* Length = 550

 Score =  129 bits (326), Expect = 4e-36
 Identities = 43/127 (33%), Positives = 67/127 (52%), Gaps = 5/127 (3%)

Query: 39  QCLVSAKYDNLTVDRRSANYQPSIWDHDFLQSLNSNYTDETYKRREEELKGKVMTTIKDV 98
               +       + R  A++ PS+W   FL     N   E Y +  E LK +    +   
Sbjct: 3   MASAAVANYEEEIVRPVADFSPSLWGDQFLSFSIKNQVAEKYAKEIEALKEQTRNMLLAT 62

Query: 99  T-EPLNQLELIDSLQRLGLAYHFETEIRNILHDIYNSNNDYVWRKENLYATSLEFRLLRQ 157
             +  + L LID+++RLG++YHFE EI +IL  IYN N++      +L  ++L+FRLLRQ
Sbjct: 63  GMKLADTLNLIDTIERLGISYHFEKEIDDILDQIYNQNSNC----NDLCTSALQFRLLRQ 118

Query: 158 HGYPVSQ 164
           HG+ +S 
Sbjct: 119 HGFNISP 125

>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A* Length = 554

 Score =  127 bits (319), Expect = 4e-35
 Identities = 51/133 (38%), Positives = 70/133 (52%), Gaps = 3/133 (2%)

Query: 32  MAKNKPVQCLVSAKYDNLTVDRRSANYQPSIWDHDFLQSLNSNYTDETYKRREEELKGKV 91
           MA         S    N    R  A++QPSIW   FL   + N   ET KR ++  +   
Sbjct: 1   MASQVSQMPSSSPLSSNKDEMRPKADFQPSIWGDLFLNCPDKNIDAETEKRHQQLKEEVR 60

Query: 92  MTTIKDVTEPLNQLELIDSLQRLGLAYHFETEIRNILHDIYNSNNDYVWRKENLYATSLE 151
              +  +     +L  IDS+QRLG++YHF  EI + L +IY++NND      +LY TS+ 
Sbjct: 61  KMIVAPMANSTQKLAFIDSVQRLGVSYHFTKEIEDELENIYHNNNDAE---NDLYTTSIR 117

Query: 152 FRLLRQHGYPVSQ 164
           FRLLR+HGY VS 
Sbjct: 118 FRLLREHGYNVSC 130

>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Length = 727

 Score =  105 bits (262), Expect = 4e-27
 Identities = 35/126 (27%), Positives = 57/126 (45%), Gaps = 9/126 (7%)

Query: 45  KYDNLTVDRRSANYQPSIWDHDFLQSLNSNYTDETYKRREEELKGKVMTTIKDVTEPLNQ 104
           K   L     S  + PS     F+Q+ +SN  +   +   +   G V        +    
Sbjct: 192 KLLKLQSQDGSFLFSPSSTAFAFMQTRDSNCLEY-LRNAVKRFNGGVPNVFPV--DLFEH 248

Query: 105 LELIDSLQRLGLAYHFETEIRNILHDIYNSNND------YVWRKENLYATSLEFRLLRQH 158
           + ++D LQRLG++ +FE EI+  L  ++    D           +++  T++ FRLLRQH
Sbjct: 249 IWIVDRLQRLGISRYFEEEIKECLDYVHRYWTDNGICWARCSHVQDIDDTAMAFRLLRQH 308

Query: 159 GYPVSQ 164
           GY VS 
Sbjct: 309 GYQVSA 314

>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Length = 764

 Score = 81.4 bits (200), Expect = 8e-19
 Identities = 34/123 (27%), Positives = 52/123 (42%), Gaps = 16/123 (13%)

Query: 53  RRSANYQPSIWDHDFLQSLNS------NYTDETYKRREEELKGKVMTTIKDV--TEPLNQ 104
            +   +Q    D  FL S  S      N  DE        L  K    +  +   + L +
Sbjct: 192 NKIMRFQS--KDGSFLSSPASTACVLMNTGDEKCFTFLNNLLDKFGGCVPCMYSIDLLER 249

Query: 105 LELIDSLQRLGLAYHFETEIRNILHDIYN--SNNDYVWRKE----NLYATSLEFRLLRQH 158
           L L+D+++ LG+  HF+ EI+  L  +Y   S     W ++    +L  T+L  R LR H
Sbjct: 250 LSLVDNIEHLGIGRHFKQEIKGALDYVYRHWSERGIGWGRDSLVPDLNTTALGLRTLRMH 309

Query: 159 GYP 161
           GY 
Sbjct: 310 GYN 312

>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Length = 817

 Score = 81.1 bits (199), Expect = 1e-18
 Identities = 35/126 (27%), Positives = 52/126 (41%), Gaps = 14/126 (11%)

Query: 53  RRSANYQPSIWDHDFLQSLNSN---YTDETYKRREEELKGKVMTTIKDV-----TEPLNQ 104
                 +    D  FL S  S    +      +  E L   ++     V      + L +
Sbjct: 242 EWERIMEVQSQDGSFLSSPASTACVFMHTGDAKCLEFLNSVMIKFGNFVPCLYPVDLLER 301

Query: 105 LELIDSLQRLGLAYHFETEIRNILHDIYN--SNNDYVWRKEN----LYATSLEFRLLRQH 158
           L ++D++ RLG+  HFE EI+  L  +Y   +     W + N    L  T+L FRLLR H
Sbjct: 302 LLIVDNIVRLGIYRHFEKEIKEALDYVYRHWNERGIGWGRLNPIADLETTALGFRLLRLH 361

Query: 159 GYPVSQ 164
            Y VS 
Sbjct: 362 RYNVSP 367

>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Length = 817

 Score = 65.3 bits (158), Expect = 4e-13
 Identities = 25/133 (18%), Positives = 44/133 (33%), Gaps = 15/133 (11%)

Query: 42  VSAKYDNLTVDRRSANYQPSIWDHDFLQSLNSNYTDETYKRREEELKGKVMTTIKDVTEP 101
           V        + RR+AN  P++W +D + SL S Y D +Y+ R E L  ++   +      
Sbjct: 14  VCDLSSTSGLIRRTANPHPNVWGYDLVHSLKSPYIDSSYRERAEVLVSEIKAMLNPAITG 73

Query: 102 LNQLELIDSLQRLGL-----------AYHFETEIRNILHDIYNS----NNDYVWRKENLY 146
             +  +  S                    F   +  IL +           +    + L 
Sbjct: 74  DGESMITPSAYDTAWVARVPAIDGSARPQFPQTVDWILKNQLKDGSWGIQSHFLLSDRLL 133

Query: 147 ATSLEFRLLRQHG 159
           AT     +L +  
Sbjct: 134 ATLSCVLVLLKWN 146

>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Length = 785

 Score = 80.3 bits (197), Expect = 2e-18
 Identities = 29/126 (23%), Positives = 53/126 (42%), Gaps = 16/126 (12%)

Query: 53  RRSANYQPSIWDHDFLQSLNSN---YTDETYKRREEELKGKVMTTIKDV-----TEPLNQ 104
           ++    Q    D  FL S  S    +     K+  + L   +      V      +   +
Sbjct: 216 QKIMKLQS--KDGSFLSSPASTAAVFMRTGNKKCLDFLNFVLKKFGNHVPCHYPLDLFER 273

Query: 105 LELIDSLQRLGLAYHFETEIRNILHDIYNSNNDY------VWRKENLYATSLEFRLLRQH 158
           L  +D+++RLG+  HF+ EI+  L  +Y+  ++            ++  T++  R+LR H
Sbjct: 274 LWAVDTVERLGIDRHFKEEIKEALDYVYSHWDERGIGWARENPVPDIDDTAMGLRILRLH 333

Query: 159 GYPVSQ 164
           GY VS 
Sbjct: 334 GYNVSS 339

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	164
3m00_A	550	Aristolochene synthase; plant terpenoid cyclase, l	100.0
3g4d_A	554	(+)-delta-cadinene synthase isozyme XC1; cyclase,	100.0
3n0f_A	555	Isoprene synthase; terpene cyclase fold, hemiterpe	100.0
2ong_A	543	4S-limonene synthase; monoterpene synthase, monote	100.0
1n1b_A	549	(+)-bornyl diphosphate synthase; terpene synthase	100.0
2j5c_A	569	1,8-cineole synthase; terpene synthases, 1, monote	100.0
3pya_A	727	ENT-copalyl diphosphate synthase, chloroplastic; c	100.0
3s9v_A	785	Abietadiene synthase, chloroplastic; alpha bundle/	100.0
3sdr_A	817	Alpha-bisabolene synthase; lyase, terpene synthase	100.0
3p5p_A	764	Taxadiene synthase; class I and II terpene cyclase	100.0
3sdr_A	817	Alpha-bisabolene synthase; lyase, terpene synthase	97.88

>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A*

Probab=100.00  E-value=1.3e-38  Score=287.96  Aligned_cols=114  Identities=38%  Similarity=0.672  Sum_probs=100.4

Q ss_pred             ccccccCCCCCCCCCCCcccccccCCCCCchHHHHHHHHHHHHHhcccccc-cccccchhhHHHHHHHhCcccchHHHHH
Q 048547           47 DNLTVDRRSANYQPSIWDHDFLQSLNSNYTDETYKRREEELKGKVMTTIKD-VTEPLNQLELIDSLQRLGLAYHFETEIR  125 (164)
Q Consensus        47 ~~~~~~r~~a~~~PsiW~~~fl~sl~~~~~~~~~~~~~e~LKeeVr~ml~~-~~d~~e~L~lID~LQRLGIsyhFe~EI~  125 (164)
                      +.+++.||+|+|+||+|||+|++++.+++..+.+.+++++||++||+||.. ..+++++|+|||+||||||+|||++||+
T Consensus        11 ~~~~~~R~~~~~~ps~W~d~fl~~~~~~~~~~~~~~~~e~Lk~eVr~~l~~~~~~~~~~L~lID~lqrLGi~~hF~~EI~   90 (550)
T 3m00_A           11 YEEEIVRPVADFSPSLWGDQFLSFSIKNQVAEKYAKEIEALKEQTRNMLLATGMKLADTLNLIDTIERLGISYHFEKEID   90 (550)
T ss_dssp             -----CCCCCCCCCCTTTTTTSCCCCCHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHTTCGGGCHHHHH
T ss_pred             cccccCCCCCCCCcccccccccccCCcchhhHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHcCchhhhHHHHH
Confidence            456678999999999999999998766556777899999999999999975 4789999999999999999999999999


Q ss_pred             HHHHHHHhccCCcCCCCCChHHHHHHHHHhhhCCCCCCC
Q 048547          126 NILHDIYNSNNDYVWRKENLYATSLEFRLLRQHGYPVSQ  164 (164)
Q Consensus       126 ~~L~~i~~~~~~~~~~~~DL~~~AL~FRLLRqhGY~VS~  164 (164)
                      ++|++||+.|..    ..|||+|||+|||||||||+|||
T Consensus        91 ~~L~~i~~~~~~----~~dl~~~al~FRLLR~hGy~VS~  125 (550)
T 3m00_A           91 DILDQIYNQNSN----CNDLCTSALQFRLLRQHGFNISP  125 (550)
T ss_dssp             HHHHHHHHHCCC----CSSHHHHHHHHHHHHHTTCCCCG
T ss_pred             HHHHHHHHhccc----CCCHHHHHHHHHHHHhcCCCCCh
Confidence            999999988754    37999999999999999999996

>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A*

Probab=100.00  E-value=2.6e-37  Score=279.75  Aligned_cols=113  Identities=42%  Similarity=0.708  Sum_probs=92.8

Q ss_pred             cccccCCCCCCCCCCCcccccccCCCCCchHHHHHHHHHHHHHhcccccc-cccccchhhHHHHHHHhCcccchHHHHHH
Q 048547           48 NLTVDRRSANYQPSIWDHDFLQSLNSNYTDETYKRREEELKGKVMTTIKD-VTEPLNQLELIDSLQRLGLAYHFETEIRN  126 (164)
Q Consensus        48 ~~~~~r~~a~~~PsiW~~~fl~sl~~~~~~~~~~~~~e~LKeeVr~ml~~-~~d~~e~L~lID~LQRLGIsyhFe~EI~~  126 (164)
                      ..++.||++||+||+|||+|+++ .+++..+.+.+++++||++||+||.. ..|++++|+|||+||||||+|||++||++
T Consensus        17 ~~~~~R~~~~~~ps~W~~~fl~~-~~~~~~~~~~~~~e~Lk~eVr~~l~~~~~~~~~~l~lID~lqrLGi~~hF~~EI~~   95 (554)
T 3g4d_A           17 NKDEMRPKADFQPSIWGDLFLNC-PDKNIDAETEKRHQQLKEEVRKMIVAPMANSTQKLAFIDSVQRLGVSYHFTKEIED   95 (554)
T ss_dssp             --------CCCCCCTTTTTTTSC-CC---CHHHHHHHHHHHHHHHHHHHSCCSSHHHHHHHHHHHHHTTCGGGCHHHHHH
T ss_pred             cCCCCCCCCCCCccccccccccC-CCchhhHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHcCchhhhHHHHHH
Confidence            35568999999999999999998 66666788999999999999999975 47999999999999999999999999999


Q ss_pred             HHHHHHhccCCcCCCCCChHHHHHHHHHhhhCCCCCCC
Q 048547          127 ILHDIYNSNNDYVWRKENLYATSLEFRLLRQHGYPVSQ  164 (164)
Q Consensus       127 ~L~~i~~~~~~~~~~~~DL~~~AL~FRLLRqhGY~VS~  164 (164)
                      +|++||+. ..  ....|||+|||+|||||||||+|||
T Consensus        96 ~L~~i~~~-~~--~~~~dl~~~al~FRlLR~hGy~VS~  130 (554)
T 3g4d_A           96 ELENIYHN-NN--DAENDLYTTSIRFRLLREHGYNVSC  130 (554)
T ss_dssp             HHHHHHHS-CC--CTTCCHHHHHHHHHHHHHTTCCCCG
T ss_pred             HHHHHHhc-cC--CCCCCHHHHHHHHHHHHhcCCCCCh
Confidence            99999975 21  1226999999999999999999996

>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A*

Probab=100.00  E-value=2e-37  Score=280.59  Aligned_cols=113  Identities=47%  Similarity=0.707  Sum_probs=93.4

Q ss_pred             cCCCCCCCCCCCcccccccCCCCCchHHHHHHHHHHHHHhcccccccc-cccchhhHHHHHHHhCcccchHHHHHHHHHH
Q 048547           52 DRRSANYQPSIWDHDFLQSLNSNYTDETYKRREEELKGKVMTTIKDVT-EPLNQLELIDSLQRLGLAYHFETEIRNILHD  130 (164)
Q Consensus        52 ~r~~a~~~PsiW~~~fl~sl~~~~~~~~~~~~~e~LKeeVr~ml~~~~-d~~e~L~lID~LQRLGIsyhFe~EI~~~L~~  130 (164)
                      .|++|||+||+|||+|++++.+++..+.+.+++++||++||+||.... +++++|+|||+||||||+|||++||+++|++
T Consensus        14 ~~~~~~~~ps~W~~~fl~~~~~~~~~~~~~~~~e~Lk~eVr~~l~~~~~~~~~~L~lID~lqRLGi~~hF~~EI~~~L~~   93 (555)
T 3n0f_A           14 ARRSADYEPNSWDYDFLLSSDTDESIEVYKDKAKKLEAEVRREINNEKAEFLTLLELIDNVQRLGLGYRFESDIRRALDR   93 (555)
T ss_dssp             ---CCCCCCCTTCHHHHTCC-----CHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHTTCGGGSHHHHHHHHHH
T ss_pred             cCCCCCCCcccccccccccCCcchhhHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHcCchhhhHHHHHHHHHH
Confidence            588999999999999999877666778899999999999999997556 8999999999999999999999999999999


Q ss_pred             HHhccCCcCCCCCChHHHHHHHHHhhhCCCCCCC
Q 048547          131 IYNSNNDYVWRKENLYATSLEFRLLRQHGYPVSQ  164 (164)
Q Consensus       131 i~~~~~~~~~~~~DL~~~AL~FRLLRqhGY~VS~  164 (164)
                      ||+......+...|||+|||+|||||||||+|||
T Consensus        94 i~~~~~~~~~~~~DL~~~Al~FRLLR~hGy~VS~  127 (555)
T 3n0f_A           94 FVSSGGFDGVTKTSLHATALSFRLLRQHGFEVSQ  127 (555)
T ss_dssp             HHHTCHHHHHTTTCHHHHHHHHHHHHHTTCCCCG
T ss_pred             HHhhccccccccCCHHHHHHHHHHHHhcCCCcCh
Confidence            9974110011237999999999999999999996

>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A*

Probab=100.00  E-value=9.4e-37  Score=275.52  Aligned_cols=112  Identities=47%  Similarity=0.788  Sum_probs=100.4

Q ss_pred             CCCCCCCCCCCcccccccCCCCCchHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHhCcccchHHHHHHHHHHHH
Q 048547           53 RRSANYQPSIWDHDFLQSLNSNYTDETYKRREEELKGKVMTTIKDVTEPLNQLELIDSLQRLGLAYHFETEIRNILHDIY  132 (164)
Q Consensus        53 r~~a~~~PsiW~~~fl~sl~~~~~~~~~~~~~e~LKeeVr~ml~~~~d~~e~L~lID~LQRLGIsyhFe~EI~~~L~~i~  132 (164)
                      ||+++|+||+||++|++++.+.+..+.+.+++++||++||+|+.+..|++++|+|||+||||||+|||++||+++|++||
T Consensus         2 r~~~~~~ps~W~~~fl~~~~~~~~~~~~~~~~~~Lk~~V~~~~~~~~d~~~~l~liD~lqrLGi~~hF~~EI~~~L~~i~   81 (543)
T 2ong_A            2 RRSGNYNPSRWDVNFIQSLLSDYKEDKHVIRASELVTLVKMELEKETDQIRQLELIDDLQRMGLSDHFQNEFKEILSSIY   81 (543)
T ss_dssp             CCCCCCCCCSSCHHHHHHCCCSSCSTHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTGGGTTHHHHHHHHHHHH
T ss_pred             CCCCCCCCCcCCcccccCCCchhhhhHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCchhhhHHHHHHHHHHHH
Confidence            88999999999999999876666667889999999999999998767999999999999999999999999999999999


Q ss_pred             hccCCcC-C--C-CCChHHHHHHHHHhhhCCCCCCC
Q 048547          133 NSNNDYV-W--R-KENLYATSLEFRLLRQHGYPVSQ  164 (164)
Q Consensus       133 ~~~~~~~-~--~-~~DL~~~AL~FRLLRqhGY~VS~  164 (164)
                      +.|.... |  . ..|||+|||+|||||||||+|||
T Consensus        82 ~~~~~~~~~~~~~~~dl~~~al~FRlLR~hGy~vs~  117 (543)
T 2ong_A           82 LDHHYYKNPFPKEERDLYSTSLAFRLLREHGFQVAQ  117 (543)
T ss_dssp             HTTTCCCSSCCCCCCCHHHHHHHHHHHHHTTCCCCG
T ss_pred             HhhcccccccccccCCHHHHHHHHHHHHHcCCCccH
Confidence            8764311 1  1 36999999999999999999996

>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A*

Probab=100.00  E-value=6.2e-37  Score=277.08  Aligned_cols=115  Identities=48%  Similarity=0.756  Sum_probs=90.6

Q ss_pred             cccCCCCCCCCCCCcccccccCCCCCchHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHhCcccchHHHHHHHHH
Q 048547           50 TVDRRSANYQPSIWDHDFLQSLNSNYTDETYKRREEELKGKVMTTIKDVTEPLNQLELIDSLQRLGLAYHFETEIRNILH  129 (164)
Q Consensus        50 ~~~r~~a~~~PsiW~~~fl~sl~~~~~~~~~~~~~e~LKeeVr~ml~~~~d~~e~L~lID~LQRLGIsyhFe~EI~~~L~  129 (164)
                      .+.||+++|+||+||++|++++.+.+..+.+.+++++||++||+|+.+..|++++|+|||+||||||+|||++||+++|+
T Consensus         3 ~~~r~~~~~~ps~W~~~fl~s~~~~~~~~~~~~~~~~Lk~~V~~~~~~~~d~~~~l~lvD~lqrLGi~~hF~~EI~~~L~   82 (549)
T 1n1b_A            3 HQIRRSGNYQPALWDSNYIQSLNTPYTEERHLDRKAELIVQVRILLKEKMEPVQQLELIHDLKYLGLSDFFQDEIKEILG   82 (549)
T ss_dssp             ------------CCCHHHHHHCCCSTTSHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCGGGGHHHHHHHHH
T ss_pred             CcCCCCCCCCCCCCCCCcccCCCcchhhhHHHHHHHHHHHHHHHHHhcccCHHHHHHhHHHHHhCCchhhhHHHHHHHHH
Confidence            45799999999999999998776666667889999999999999998767999999999999999999999999999999


Q ss_pred             HHHhccCCc-CC--CCCChHHHHHHHHHhhhCCCCCCC
Q 048547          130 DIYNSNNDY-VW--RKENLYATSLEFRLLRQHGYPVSQ  164 (164)
Q Consensus       130 ~i~~~~~~~-~~--~~~DL~~~AL~FRLLRqhGY~VS~  164 (164)
                      +||+.+... ..  ...|||+|||+|||||||||+|||
T Consensus        83 ~i~~~~~~~~~~~~~~~dl~~~al~FRlLR~hGy~Vs~  120 (549)
T 1n1b_A           83 VIYNEHKCFHNNEVEKMDLYFTALGFRLLRQHGFNISQ  120 (549)
T ss_dssp             HHHHHCHHHHHCCCCSCCHHHHHHHHHHHHHTTCCCCG
T ss_pred             HHHhhhccccccccccCChhhchhhhhHHHhcCCCcCH
Confidence            999864321 00  136999999999999999999996

>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa}

Probab=100.00  E-value=8.6e-37  Score=277.16  Aligned_cols=113  Identities=39%  Similarity=0.669  Sum_probs=75.2

Q ss_pred             ccccCCCCCCCCCCCcccccccCCCCCchHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHhCcccchHHHHHHHH
Q 048547           49 LTVDRRSANYQPSIWDHDFLQSLNSNYTDETYKRREEELKGKVMTTIKDVTEPLNQLELIDSLQRLGLAYHFETEIRNIL  128 (164)
Q Consensus        49 ~~~~r~~a~~~PsiW~~~fl~sl~~~~~~~~~~~~~e~LKeeVr~ml~~~~d~~e~L~lID~LQRLGIsyhFe~EI~~~L  128 (164)
                      ++..||+++|+||+||+.|++++.+.+..+.+.+++++||++||+|+.+..|++++|+|||+||||||+|||++||+++|
T Consensus        31 ~~~~r~~~~~~ps~W~~~fl~~~~~~~~~~~~~~~~~~Lk~~Vr~~~~~~~d~~~~l~lID~lqrLGi~~hFe~EI~~~L  110 (569)
T 2j5c_A           31 KDRWIRTGGYQPTLWDFSTIQSFDSEYKEEKHLMRAAGMIDQVKMMLQEEVDSIRRLELIDDLRRLGISCHFEREIVEIL  110 (569)
T ss_dssp             -------------------------------CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCGGGGHHHHHHHH
T ss_pred             ccccCCCCCCCCCcCCcccccCCCchhhhHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhCCchhhhHHHHHHHH
Confidence            45679999999999999999987666666678999999999999999876799999999999999999999999999999


Q ss_pred             HHHH-hccCCcCCCCCChHHHHHHHHHhhhCCCCCCC
Q 048547          129 HDIY-NSNNDYVWRKENLYATSLEFRLLRQHGYPVSQ  164 (164)
Q Consensus       129 ~~i~-~~~~~~~~~~~DL~~~AL~FRLLRqhGY~VS~  164 (164)
                      ++|| +.+..   ...|||+|||+|||||||||+|||
T Consensus       111 ~~i~~~~~~~---~~~Dl~~~al~FRlLR~hGy~Vs~  144 (569)
T 2j5c_A          111 NSKYYTNNEI---DERDLYSTALRFRLLRQYDFSVSQ  144 (569)
T ss_dssp             HHHTTSSCCS---CTTCHHHHHHHHHHHHHTTCCCCG
T ss_pred             HHHHHhccCc---ccCChhhhhHHhHHHHhcCCCcCH
Confidence            9999 65432   236999999999999999999996

>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*

Probab=100.00  E-value=2.7e-35  Score=273.11  Aligned_cols=130  Identities=29%  Similarity=0.472  Sum_probs=105.1

Q ss_pred             CCchhHhhhcCCCCCChhhHHHHHHhhhcCCCeeeccCcccccccccCCCCCCCCCCCcccccccCCCCCchHHHHHHHH
Q 048547            6 NPSTLVTSVNGFKCLPLATNKAAIRIMAKNKPVQCLVSAKYDNLTVDRRSANYQPSIWDHDFLQSLNSNYTDETYKRREE   85 (164)
Q Consensus         6 ~p~~~~~~~eg~~~~~~~~w~~~~~~~~~~gs~~~s~s~~~~~~~~~r~~a~~~PsiW~~~fl~sl~~~~~~~~~~~~~e   85 (164)
                      .|+||+||+|||+++   ||++++++|++||||++|||+  ||.                .+++.     .++.+   .+
T Consensus       174 ~p~~llhslEgl~~~---dw~~~~~~q~~~GS~~~SPsa--TAa----------------~l~~~-----~d~~~---l~  224 (727)
T 3pya_A          174 IPTTLLHSLEGMRDL---DWEKLLKLQSQDGSFLFSPSS--TAF----------------AFMQT-----RDSNC---LE  224 (727)
T ss_dssp             SCCGGGGGGGGCCCC---CHHHHGGGCCTTSSBTTBHHH--HHH----------------HHHHH-----CCHHH---HH
T ss_pred             CCchHHHHHhccccc---CHHHHhcccCCCCCcccCHHH--HHH----------------HHhcC-----CCHHH---HH
Confidence            799999999999995   999999999999999999999  873                34431     12222   34


Q ss_pred             HHHHHhcccccc-----cccccchhhHHHHHHHhCcccchHHHHHHHHHHHHhccCCcC--C----CCCChHHHHHHHHH
Q 048547           86 ELKGKVMTTIKD-----VTEPLNQLELIDSLQRLGLAYHFETEIRNILHDIYNSNNDYV--W----RKENLYATSLEFRL  154 (164)
Q Consensus        86 ~LKeeVr~ml~~-----~~d~~e~L~lID~LQRLGIsyhFe~EI~~~L~~i~~~~~~~~--~----~~~DL~~~AL~FRL  154 (164)
                      .|+..|++...+     +.+++++|++||+||||||+|||++||+++|+++|+.|...+  +    ...|||+|||+|||
T Consensus       225 YL~~~v~k~~g~VP~~yP~d~~e~L~lID~LqRLGIs~hFe~EI~~~L~~i~~~~~~~g~~~~~~~~~~DL~~tAL~FRL  304 (727)
T 3pya_A          225 YLRNAVKRFNGGVPNVFPVDLFEHIWIVDRLQRLGISRYFEEEIKECLDYVHRYWTDNGICWARCSHVQDIDDTAMAFRL  304 (727)
T ss_dssp             HHHHHHHHTTTCCCSSCCCHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHTCCTTCCCSSSSCSCCCHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhcCcccccCCCCCCHHHHHHHHHH
Confidence            444455544322     479999999999999999999999999999999998765322  1    12599999999999


Q ss_pred             hhhCCCCCCC
Q 048547          155 LRQHGYPVSQ  164 (164)
Q Consensus       155 LRqhGY~VS~  164 (164)
                      ||||||+|||
T Consensus       305 LRqhGy~VS~  314 (727)
T 3pya_A          305 LRQHGYQVSA  314 (727)
T ss_dssp             HHHTTCCCCG
T ss_pred             HHhCCCCCCH
Confidence            9999999996

>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}

Probab=100.00  E-value=3.7e-35  Score=274.33  Aligned_cols=132  Identities=22%  Similarity=0.415  Sum_probs=108.1

Q ss_pred             CCchhHhhhcCCCCCChhhHHHHHHhhhcCCCeeeccCcccccccccCCCCCCCCCCCcccccccCCCCCchHHHHHHHH
Q 048547            6 NPSTLVTSVNGFKCLPLATNKAAIRIMAKNKPVQCLVSAKYDNLTVDRRSANYQPSIWDHDFLQSLNSNYTDETYKRREE   85 (164)
Q Consensus         6 ~p~~~~~~~eg~~~~~~~~w~~~~~~~~~~gs~~~s~s~~~~~~~~~r~~a~~~PsiW~~~fl~sl~~~~~~~~~~~~~e   85 (164)
                      .||||+||+|||+++  +||++++++|++||||++|||+  ||.                .++++     .++.+.+..+
T Consensus       198 ~p~~llhslE~l~~~--~d~~~v~~~q~~~GS~~~SPsa--TAa----------------~l~~~-----~d~~~~~YL~  252 (785)
T 3s9v_A          198 LPTTLLYSLEGLQEI--VDWQKIMKLQSKDGSFLSSPAS--TAA----------------VFMRT-----GNKKCLDFLN  252 (785)
T ss_dssp             SCCGGGGGGGGCTTT--CCHHHHHTTCCTTSCBTTBHHH--HHH----------------HHHHH-----CCHHHHHHHH
T ss_pred             CcchHHHHHHhcccc--ccHHHHHhccCCCCCcccCHHH--HHH----------------HHHhC-----CChhHHHHHH
Confidence            699999999999997  5999999999999999999999  873                34432     1334444333


Q ss_pred             ----HHHHHhcccccccccccchhhHHHHHHHhCcccchHHHHHHHHHHHHhccCCcC--C---C-CCChHHHHHHHHHh
Q 048547           86 ----ELKGKVMTTIKDVTEPLNQLELIDSLQRLGLAYHFETEIRNILHDIYNSNNDYV--W---R-KENLYATSLEFRLL  155 (164)
Q Consensus        86 ----~LKeeVr~ml~~~~d~~e~L~lID~LQRLGIsyhFe~EI~~~L~~i~~~~~~~~--~---~-~~DL~~~AL~FRLL  155 (164)
                          +....|+.++  +.+++++|++||+||||||+|||++||+++|+++|+.|...+  +   . ..|||+|||+||||
T Consensus       253 ~~~~~~~g~VP~~y--P~d~~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~~~~~gi~~~~~~~~~Dl~~tAl~FRlL  330 (785)
T 3s9v_A          253 FVLKKFGNHVPCHY--PLDLFERLWAVDTVERLGIDRHFKEEIKEALDYVYSHWDERGIGWARENPVPDIDDTAMGLRIL  330 (785)
T ss_dssp             HHHHHHSSCCCSSC--CCHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTCCTTCCCSSTTCSSCCHHHHHHHHHHH
T ss_pred             HHHHhcCCCCCCcC--CCcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhccccccccCCCCCHHHHHHHHHHH
Confidence                3334566666  478999999999999999999999999999999998766422  1   1 25999999999999


Q ss_pred             hhCCCCCCC
Q 048547          156 RQHGYPVSQ  164 (164)
Q Consensus       156 RqhGY~VS~  164 (164)
                      |||||+|||
T Consensus       331 R~~Gy~VS~  339 (785)
T 3s9v_A          331 RLHGYNVSS  339 (785)
T ss_dssp             HHTTCCCCG
T ss_pred             HhcCCCCCH
Confidence            999999996

>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*

Probab=100.00  E-value=2.4e-35  Score=276.56  Aligned_cols=132  Identities=27%  Similarity=0.411  Sum_probs=108.6

Q ss_pred             CCchhHhhhcCCCCCChhhHHHHHHhhhcCCCeeeccCcccccccccCCCCCCCCCCCcccccccCCCCCchHHHHHHHH
Q 048547            6 NPSTLVTSVNGFKCLPLATNKAAIRIMAKNKPVQCLVSAKYDNLTVDRRSANYQPSIWDHDFLQSLNSNYTDETYKRREE   85 (164)
Q Consensus         6 ~p~~~~~~~eg~~~~~~~~w~~~~~~~~~~gs~~~s~s~~~~~~~~~r~~a~~~PsiW~~~fl~sl~~~~~~~~~~~~~e   85 (164)
                      +||||+||+|||+++  +||++++++|++||||++|||+  ||                ..++++     .++.|.+..+
T Consensus       226 ~p~~llhslE~l~~~--~d~~~~~~~q~~~GS~~~SPsa--TA----------------a~l~~~-----~d~~~~~YL~  280 (817)
T 3sdr_A          226 VPSPLLYSLEGIQDI--VEWERIMEVQSQDGSFLSSPAS--TA----------------CVFMHT-----GDAKCLEFLN  280 (817)
T ss_dssp             SCCGGGGGGGGCTTT--CCTTTGGGGCCTTSCBTTBHHH--HH----------------HHHHHH-----CCHHHHHHHH
T ss_pred             CCchHHHHHHhcccc--ccHHHHHhccCCCCCcccCHHH--HH----------------HHHHhC-----CChhHHHHHH
Confidence            799999999999997  5999999999999999999999  87                334542     1344444444


Q ss_pred             HH----HHHhcccccccccccchhhHHHHHHHhCcccchHHHHHHHHHHHHhccCCcC--C---C-CCChHHHHHHHHHh
Q 048547           86 EL----KGKVMTTIKDVTEPLNQLELIDSLQRLGLAYHFETEIRNILHDIYNSNNDYV--W---R-KENLYATSLEFRLL  155 (164)
Q Consensus        86 ~L----KeeVr~ml~~~~d~~e~L~lID~LQRLGIsyhFe~EI~~~L~~i~~~~~~~~--~---~-~~DL~~~AL~FRLL  155 (164)
                      .+    ...|+.++  +.+++++|++||+||||||+|||++||+++|+++|+.|..++  +   + ..|||+|||+||||
T Consensus       281 ~~~~~~~g~VP~~y--P~d~~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~~~~~gi~~~~~~~~~Dl~~tAl~FRlL  358 (817)
T 3sdr_A          281 SVMIKFGNFVPCLY--PVDLLERLLIVDNIVRLGIYRHFEKEIKEALDYVYRHWNERGIGWGRLNPIADLETTALGFRLL  358 (817)
T ss_dssp             HHHHHHSSCCCSSS--CCHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHHCCTTCCCSSTTCSSCCHHHHHHHHHHH
T ss_pred             HHHHhcCCCCCccC--CCcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhcccccccCCCCCCHHHHHHHHHHH
Confidence            33    34466666  478999999999999999999999999999999998765421  1   1 26999999999999


Q ss_pred             hhCCCCCCC
Q 048547          156 RQHGYPVSQ  164 (164)
Q Consensus       156 RqhGY~VS~  164 (164)
                      |||||+|||
T Consensus       359 R~~Gy~VS~  367 (817)
T 3sdr_A          359 RLHRYNVSP  367 (817)
T ss_dssp             HHTTCCCCG
T ss_pred             HHcCCCccH
Confidence            999999996

>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*

Probab=100.00  E-value=4.1e-35  Score=273.38  Aligned_cols=133  Identities=24%  Similarity=0.415  Sum_probs=109.1

Q ss_pred             cCCchhHhhhcCCCCCChhhHHHHHHhhhcCCCeeeccCcccccccccCCCCCCCCCCCcccccccCCCCCchHHHHHHH
Q 048547            5 INPSTLVTSVNGFKCLPLATNKAAIRIMAKNKPVQCLVSAKYDNLTVDRRSANYQPSIWDHDFLQSLNSNYTDETYKRRE   84 (164)
Q Consensus         5 ~~p~~~~~~~eg~~~~~~~~w~~~~~~~~~~gs~~~s~s~~~~~~~~~r~~a~~~PsiW~~~fl~sl~~~~~~~~~~~~~   84 (164)
                      -+||||+||+|||+++  +||++++++|++||||++|||+  ||                ..++++     .++.+.+..
T Consensus       173 ~~p~~llhslE~~~~~--~d~~~~~~~~~~~GS~~~SPsa--TA----------------a~l~~~-----~d~~~~~YL  227 (764)
T 3p5p_A          173 NIPANMLNALEGLEEV--IDWNKIMRFQSKDGSFLSSPAS--TA----------------CVLMNT-----GDEKCFTFL  227 (764)
T ss_dssp             SSCGGGGGGGGGSGGG--CCTTGGGGGBCTTSCBTTBHHH--HH----------------HHHHHH-----CCHHHHHHH
T ss_pred             CCCchHHHHHHhcccc--ccHHHHHhccCCCCCcccChHH--HH----------------HHHHhC-----CChhHHHHH
Confidence            4799999999999997  4999999999999999999999  87                334442     133444444


Q ss_pred             H----HHHHHhcccccccccccchhhHHHHHHHhCcccchHHHHHHHHHHHHhccCCcC--C--C--CCChHHHHHHHHH
Q 048547           85 E----ELKGKVMTTIKDVTEPLNQLELIDSLQRLGLAYHFETEIRNILHDIYNSNNDYV--W--R--KENLYATSLEFRL  154 (164)
Q Consensus        85 e----~LKeeVr~ml~~~~d~~e~L~lID~LQRLGIsyhFe~EI~~~L~~i~~~~~~~~--~--~--~~DL~~~AL~FRL  154 (164)
                      +    +....|+.++  +.+++++|++||+||||||+|||++||+++|+++|+.|..++  +  +  ..|||+|||+|||
T Consensus       228 ~~~~~~~~g~VP~~y--P~d~~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~~~~~gi~~~~~~~~~Dl~~tAl~FRl  305 (764)
T 3p5p_A          228 NNLLDKFGGCVPCMY--SIDLLERLSLVDNIEHLGIGRHFKQEIKGALDYVYRHWSERGIGWGRDSLVPDLNTTALGLRT  305 (764)
T ss_dssp             HHHHHHHTSCCCSSC--CCHHHHHHHHHHHHHHHTCGGGGHHHHHHHHHHHHHTCCTTCCCSSTTCSSCCHHHHHHHHHH
T ss_pred             HHHHHhcCCCCCCcC--CCcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhcccccccCCCCCCHHHHHHHHHH
Confidence            3    3345577776  478999999999999999999999999999999998765421  1  1  2699999999999


Q ss_pred             hhhCCCCCCC
Q 048547          155 LRQHGYPVSQ  164 (164)
Q Consensus       155 LRqhGY~VS~  164 (164)
                      ||||||+|||
T Consensus       306 LR~~Gy~VS~  315 (764)
T 3p5p_A          306 LRMHGYNVSS  315 (764)
T ss_dssp             HHHTTCCCCG
T ss_pred             HHhcCCCccH
Confidence            9999999996

>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*

Probab=97.88  E-value=3e-06  Score=79.87  Aligned_cols=49  Identities=33%  Similarity=0.628  Sum_probs=31.7

Q ss_pred             cccccCCCCCCCCCCCcccccccCCCCCchHHHHHHHHHHHHHhccccc
Q 048547           48 NLTVDRRSANYQPSIWDHDFLQSLNSNYTDETYKRREEELKGKVMTTIK   96 (164)
Q Consensus        48 ~~~~~r~~a~~~PsiW~~~fl~sl~~~~~~~~~~~~~e~LKeeVr~ml~   96 (164)
                      ..++.||+|||+|++|++.|++++.+++.++.+.+++++|+++||+|+.
T Consensus        20 ~~~~~Rrsany~Ps~W~~~~i~sl~~~~~~~~~~~~~~~Lie~VK~~l~   68 (817)
T 3sdr_A           20 TSGLIRRTANPHPNVWGYDLVHSLKSPYIDSSYRERAEVLVSEIKAMLN   68 (817)
T ss_dssp             ---------------CHHHHHHTCCCGGGSHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCccCCCCCCCCCCCCCCeeeccCCcccchhHHHHHHHHHHHHHHHhc
Confidence            3456899999999999999999998888888899999999999999985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	164
d1n1ba1	207	a.102.4.1 (A:64-270) (+)-bornyl diphosphate syntha	9e-41
d5easa1	197	a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase	1e-35

>d1n1ba1 a.102.4.1 (A:64-270) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Length = 207

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpenoid cyclase N-terminal domain
domain: (+)-bornyl diphosphate synthase
species: Garden sage (Salvia officinalis) [TaxId: 38868]

 Score =  134 bits (338), Expect = 9e-41
 Identities = 47/106 (44%), Positives = 70/106 (66%), Gaps = 3/106 (2%)

Query: 62  IWDHDFLQSLNSNYTDETYKRREEELKGKVMTTIKDVTEPLNQLELIDSLQRLGLAYHFE 121
           +WD +++QSLN+ YT+E +  R+ EL  +V   +K+  EP+ QLELI  L+ LGL+  F+
Sbjct: 1   LWDSNYIQSLNTPYTEERHLDRKAELIVQVRILLKEKMEPVQQLELIHDLKYLGLSDFFQ 60

Query: 122 TEIRNILHDIYNSNNDYVWRKE---NLYATSLEFRLLRQHGYPVSQ 164
            EI+ IL  IYN +  +   +    +LY T+L FRLLRQHG+ +SQ
Sbjct: 61  DEIKEILGVIYNEHKCFHNNEVEKMDLYFTALGFRLLRQHGFNISQ 106

>d5easa1 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 197

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpenoid cyclase N-terminal domain
domain: 5-Epi-aristolochene synthase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score =  120 bits (302), Expect = 1e-35
 Identities = 39/104 (37%), Positives = 58/104 (55%), Gaps = 5/104 (4%)

Query: 62  IWDHDFLQSLNSNYTDETYKRREEELKGKVMTTIKDVT-EPLNQLELIDSLQRLGLAYHF 120
           +W   FL     N   E Y +  E LK +  + +     +  + L LID ++RLG++YHF
Sbjct: 1   LWGDQFLSFSIDNQVAEKYAQEIEALKEQTRSMLLATGRKLADTLNLIDIIERLGISYHF 60

Query: 121 ETEIRNILHDIYNSNNDYVWRKENLYATSLEFRLLRQHGYPVSQ 164
           E EI  IL  IYN N++      +L  ++L+FRLLRQHG+ +S 
Sbjct: 61  EKEIDEILDQIYNQNSN----CNDLCTSALQFRLLRQHGFNISP 100

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	164
d1n1ba1	207	(+)-bornyl diphosphate synthase {Garden sage (Salv	100.0
d5easa1	197	5-Epi-aristolochene synthase {Tobacco (Nicotiana t	100.0

>d1n1ba1 a.102.4.1 (A:64-270) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpenoid cyclase N-terminal domain
domain: (+)-bornyl diphosphate synthase
species: Garden sage (Salvia officinalis) [TaxId: 38868]

Probab=100.00  E-value=3.9e-38  Score=252.69  Aligned_cols=103  Identities=47%  Similarity=0.744  Sum_probs=92.6

Q ss_pred             CCcccccccCCCCCchHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHhCcccchHHHHHHHHHHHHhccC--C-c
Q 048547           62 IWDHDFLQSLNSNYTDETYKRREEELKGKVMTTIKDVTEPLNQLELIDSLQRLGLAYHFETEIRNILHDIYNSNN--D-Y  138 (164)
Q Consensus        62 iW~~~fl~sl~~~~~~~~~~~~~e~LKeeVr~ml~~~~d~~e~L~lID~LQRLGIsyhFe~EI~~~L~~i~~~~~--~-~  138 (164)
                      +|||.||+|+.+++.++.+.+++++||++||+|+.+..|+.++|+|||+||||||+|||++||+++|++||+...  . +
T Consensus         1 iW~~~fl~sl~~~~~~e~~~~r~e~Lkeevr~ml~~~~d~~~~L~lID~lqRLGisyhFe~EI~~~L~~i~~~~~~~~~~   80 (207)
T d1n1ba1           1 LWDSNYIQSLNTPYTEERHLDRKAELIVQVRILLKEKMEPVQQLELIHDLKYLGLSDFFQDEIKEILGVIYNEHKCFHNN   80 (207)
T ss_dssp             CCCHHHHHHCCCSTTSHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHHCHHHHHC
T ss_pred             CCCchHHHhCCCCcccHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhchhcccc
Confidence            699999999999999999999999999999999987789999999999999999999999999999999997421  1 1


Q ss_pred             CCCCCChHHHHHHHHHhhhCCCCCCC
Q 048547          139 VWRKENLYATSLEFRLLRQHGYPVSQ  164 (164)
Q Consensus       139 ~~~~~DL~~~AL~FRLLRqhGY~VS~  164 (164)
                      .....|||+|||+|||||||||+|||
T Consensus        81 ~~~~~DL~~~AL~FRLLRqhGy~VS~  106 (207)
T d1n1ba1          81 EVEKMDLYFTALGFRLLRQHGFNISQ  106 (207)
T ss_dssp             CCCSCCHHHHHHHHHHHHHTTCCCCG
T ss_pred             ccccccHHHHHHHHHHHHHcCCCCCH
Confidence            12236999999999999999999996

>d5easa1 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpenoid cyclase N-terminal domain
domain: 5-Epi-aristolochene synthase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=100.00  E-value=6.7e-38  Score=249.70  Aligned_cols=99  Identities=39%  Similarity=0.711  Sum_probs=91.9

Q ss_pred             CCcccccccCCCCCchHHHHHHHHHHHHHhccccccc-ccccchhhHHHHHHHhCcccchHHHHHHHHHHHHhccCCcCC
Q 048547           62 IWDHDFLQSLNSNYTDETYKRREEELKGKVMTTIKDV-TEPLNQLELIDSLQRLGLAYHFETEIRNILHDIYNSNNDYVW  140 (164)
Q Consensus        62 iW~~~fl~sl~~~~~~~~~~~~~e~LKeeVr~ml~~~-~d~~e~L~lID~LQRLGIsyhFe~EI~~~L~~i~~~~~~~~~  140 (164)
                      +|||.|++++.+++..+.+.+++++||++||+||.+. .++.++|+|||+||||||+|||++||+++|++||+.+..   
T Consensus         1 iWgd~Fl~~~~~~~~~~~~~~~~e~Lk~eVr~ml~~~~~~~~~~L~lID~LqRLGi~yhFe~EI~~~L~~i~~~~~~---   77 (197)
T d5easa1           1 LWGDQFLSFSIDNQVAEKYAQEIEALKEQTRSMLLATGRKLADTLNLIDIIERLGISYHFEKEIDEILDQIYNQNSN---   77 (197)
T ss_dssp             CCGGGGSCCCCCHHHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHHCCC---
T ss_pred             CCCCcccCCCCCchhHHHHHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCC---
Confidence            6999999988777778889999999999999999765 689999999999999999999999999999999988664   


Q ss_pred             CCCChHHHHHHHHHhhhCCCCCCC
Q 048547          141 RKENLYATSLEFRLLRQHGYPVSQ  164 (164)
Q Consensus       141 ~~~DL~~~AL~FRLLRqhGY~VS~  164 (164)
                       ..|||+|||+|||||||||+|||
T Consensus        78 -~~dl~~~AL~FRLLRqhGy~Vs~  100 (197)
T d5easa1          78 -CNDLCTSALQFRLLRQHGFNISP  100 (197)
T ss_dssp             -CCSHHHHHHHHHHHHHTTCCCCG
T ss_pred             -CCcHHHHHHHHHHHHHcCcccCH
Confidence             37999999999999999999996