Citrus Sinensis ID: 048549

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100----
Protein Sequence
MAVAAAAYAGKYGITAWQAFKAQTPTARMRKVFEGSFQPVMTRREAAMILGVRESTPTEKVKESHRRVMVANHPDAGGSHYLASKINEAKAIMLRRTKRSNSAF
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHcccHHHHcccccccccccccHHHHHHHHcccccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHcccccHHHHHccccccccccHHHHHHHHcccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHccccccccc
Coil and Loop (DISEMBL)
MAVAAAAYAGKYGITAWQAFKAQTPTARMRKVfegsfqpvMTRREAAMILgvrestptekvkesHRRVMvanhpdaggshYLASKINEAKAIMLRRtkrsnsaf
Flexible Loop (DISEMBL)
MAVAAAAYagkygitaWQAFKAQTPTARMRKVfegsfqpvmTRREAAMilgvrestptekvkeshrrVMVAnhpdaggshylaSKINEAKAIMLRRtkrsnsaf
Low Complexity Region (SEG)
MavaaaayaGKYGITAWQAFKAQTPTARMRKVFEGSFQPVMTRREAAMILGVRESTPTEKVKESHRRVMVANHPDAGGSHYLASKINEAKAIMLRRTKRSNSAF
Disordered region (IsUnstruct)
****AAAYAGKYGITAWQAFKAQTPTARMRKVFEGSFQPVMTRREAAMIL******************************************************
Disordered Region (DISOPRED)
MAVAAAAYAGKYGIT******************************AAMILGVRESTPTEKVKESHRRVMVANHPDAGGSHYLASKINEAKAI************
Disordered Region (DISEMBL)
********AGKYGITAWQAFKAQTPTARMRKVFEGSFQPVMTRREAAMILGVRES**********RRVMVANHPDAGGSHYLASKINEAKAIMLRRTKRSNSAF
Disordered Region (DISPRO)
MAVAAAAYAGKYGITAWQAFKAQTPTARMRKVFEGSFQPVMTRREAAMILGVRESTPTEKVKESHRRVMVANHPDAGGSHYLASKINEAKAIMLRR********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAVAAAAYAGKYGITAWQAFKAQTPTARMRKVFEGSFQPVMTRREAAMILGVRESTPTEKVKESHRRVMVANHPDAGGSHYLASKINEAKAIMLRRTKRSNSAF
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	104	2.2.26 [Sep-21-2011]
Q8RV04	112	Mitochondrial import inne	yes	no	1.0	0.928	0.711	8e-39
Q9SF33	112	Mitochondrial import inne	no	no	0.903	0.839	0.744	1e-34
Q9LYY2	112	Mitochondrial import inne	no	no	0.903	0.839	0.712	1e-33
Q3ZBN8	116	Mitochondrial import inne	yes	no	0.951	0.853	0.420	4e-19
Q78YY6	149	DnaJ homolog subfamily C	yes	no	0.884	0.617	0.445	6e-19
Q5RF34	116	Mitochondrial import inne	yes	no	0.951	0.853	0.411	2e-18
Q96DA6	116	Mitochondrial import inne	yes	no	0.951	0.853	0.411	2e-18
Q5RCP4	150	DnaJ homolog subfamily C	no	no	0.923	0.64	0.429	5e-18
Q9Y5T4	150	DnaJ homolog subfamily C	no	no	0.932	0.646	0.433	6e-18
Q6PBT7	115	Mitochondrial import inne	no	no	0.951	0.860	0.396	5e-17

>sp|Q8RV04|TI141_ARATH Mitochondrial import inner membrane translocase subunit TIM14-1 OS=Arabidopsis thaliana GN=TIM14-1 PE=3 SV=1

 Score =  158 bits (400), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 74/104 (71%), Positives = 88/104 (84%)

Query: 1   MAVAAAAYAGKYGITAWQAFKAQTPTARMRKVFEGSFQPVMTRREAAMILGVRESTPTEK 60
           +AVAA A AG+YGI AWQAFKA+ P  +++K +EG FQP MT+REAA+ILGVRES   EK
Sbjct: 9   VAVAATALAGRYGIQAWQAFKARPPRPKIKKFYEGGFQPTMTKREAALILGVRESVAAEK 68

Query: 61  VKESHRRVMVANHPDAGGSHYLASKINEAKAIMLRRTKRSNSAF 104
           VKE+HR+VMVANHPDAGGSH+LASKINEAK +ML +TK S SAF
Sbjct: 69  VKEAHRKVMVANHPDAGGSHFLASKINEAKDVMLGKTKNSGSAF 112

Component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SF33|TI142_ARATH Mitochondrial import inner membrane translocase subunit TIM14-2 OS=Arabidopsis thaliana GN=TIM14-2 PE=3 SV=1

 Score =  144 bits (364), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 70/94 (74%), Positives = 76/94 (80%)

Query: 11  KYGITAWQAFKAQTPTARMRKVFEGSFQPVMTRREAAMILGVRESTPTEKVKESHRRVMV 70
           KYGI AWQAFK +    RMRK +EG FQ  M RREAA+ILGVRES   EKVKE+HRRVMV
Sbjct: 19  KYGIEAWQAFKLRPVRPRMRKFYEGGFQATMNRREAALILGVRESVAAEKVKEAHRRVMV 78

Query: 71  ANHPDAGGSHYLASKINEAKAIMLRRTKRSNSAF 104
           ANHPDAGGSHYLASKINEAK +ML +TK S SAF
Sbjct: 79  ANHPDAGGSHYLASKINEAKDMMLGKTKNSGSAF 112

Component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LYY2|TI143_ARATH Mitochondrial import inner membrane translocase subunit TIM14-3 OS=Arabidopsis thaliana GN=TIM14-3 PE=3 SV=1

 Score =  141 bits (356), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 67/94 (71%), Positives = 77/94 (81%)

Query: 11  KYGITAWQAFKAQTPTARMRKVFEGSFQPVMTRREAAMILGVRESTPTEKVKESHRRVMV 70
           +YGI AWQAFKA+    RMR+ +EG FQ  MTRREAA+ILGVRES   +KVKE+HRRVMV
Sbjct: 19  RYGILAWQAFKARPRVPRMRRFYEGGFQSSMTRREAALILGVRESVVADKVKEAHRRVMV 78

Query: 71  ANHPDAGGSHYLASKINEAKAIMLRRTKRSNSAF 104
           ANHPDAGGSHYLASKINEAK +ML ++  S SAF
Sbjct: 79  ANHPDAGGSHYLASKINEAKDMMLGKSNNSGSAF 112

Component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner.

Arabidopsis thaliana (taxid: 3702)

>sp|Q3ZBN8|TIM14_BOVIN Mitochondrial import inner membrane translocase subunit TIM14 OS=Bos taurus GN=DNAJC19 PE=3 SV=3

 Score = 93.2 bits (230), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 45/107 (42%), Positives = 69/107 (64%), Gaps = 8/107 (7%)

Query: 1   MAVAAAAYAGKYGITAW--------QAFKAQTPTARMRKVFEGSFQPVMTRREAAMILGV 52
           + +AAA +AG+Y + A         Q F++   TA     + G F+P MT+REAA+ILGV
Sbjct: 10  LTIAAAGFAGRYALQAMKHMEPQVKQVFQSLPKTAFSGGYYRGGFEPKMTKREAALILGV 69

Query: 53  RESTPTEKVKESHRRVMVANHPDAGGSHYLASKINEAKAIMLRRTKR 99
             +    K++++HRR+M+ NHPD GGS Y+A+KINEAK ++  + K+
Sbjct: 70  SPTANKAKIRDAHRRIMLLNHPDKGGSPYIAAKINEAKDLLEGQAKK 116

Probable component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner. May act as a co-chaperone that stimulate the ATP-dependent activity.

Bos taurus (taxid: 9913)

>sp|Q78YY6|DJC15_MOUSE DnaJ homolog subfamily C member 15 OS=Mus musculus GN=Dnajc15 PE=2 SV=1

 Score = 92.8 bits (229), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 45/101 (44%), Positives = 66/101 (65%), Gaps = 9/101 (8%)

Query: 1   MAVAAAAYAGKYGITAWQAFKAQTPTARMRKV--------FEGSFQPVMTRREAAMILGV 52
           + VAA A+AG+Y    W+  + Q  TA  RK+        ++G F+  M++REA++ILGV
Sbjct: 43  LGVAAVAFAGRYAFQIWKPLE-QVITATARKISSPSFSSYYKGGFEQKMSKREASLILGV 101

Query: 53  RESTPTEKVKESHRRVMVANHPDAGGSHYLASKINEAKAIM 93
             S    K++ +H+R+M+ NHPD GGS YLASKINEAK ++
Sbjct: 102 SPSAGKAKIRTAHKRIMILNHPDKGGSPYLASKINEAKDLL 142

Mus musculus (taxid: 10090)

>sp|Q5RF34|TIM14_PONAB Mitochondrial import inner membrane translocase subunit TIM14 OS=Pongo abelii GN=DNAJC19 PE=3 SV=3

 Score = 90.5 bits (223), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 44/107 (41%), Positives = 69/107 (64%), Gaps = 8/107 (7%)

Query: 1   MAVAAAAYAGKYGITAW--------QAFKAQTPTARMRKVFEGSFQPVMTRREAAMILGV 52
           + +AAA +AG+Y + A         Q F++   +A     + G F+P MT+REAA+ILGV
Sbjct: 10  LTIAAAGFAGRYVLQAMKHMEPQVKQVFQSLPKSAFSGGYYRGGFEPKMTKREAALILGV 69

Query: 53  RESTPTEKVKESHRRVMVANHPDAGGSHYLASKINEAKAIMLRRTKR 99
             +    K++++HRR+M+ NHPD GGS Y+A+KINEAK ++  + K+
Sbjct: 70  SPTANKGKIRDAHRRIMLLNHPDKGGSPYIAAKINEAKDLLEGQAKK 116

Probable component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner. May act as a co-chaperone that stimulate the ATP-dependent activity.

Pongo abelii (taxid: 9601)

>sp|Q96DA6|TIM14_HUMAN Mitochondrial import inner membrane translocase subunit TIM14 OS=Homo sapiens GN=DNAJC19 PE=1 SV=3

 Score = 90.5 bits (223), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 44/107 (41%), Positives = 69/107 (64%), Gaps = 8/107 (7%)

Query: 1   MAVAAAAYAGKYGITAW--------QAFKAQTPTARMRKVFEGSFQPVMTRREAAMILGV 52
           + +AAA +AG+Y + A         Q F++   +A     + G F+P MT+REAA+ILGV
Sbjct: 10  LTIAAAGFAGRYVLQAMKHMEPQVKQVFQSLPKSAFSGGYYRGGFEPKMTKREAALILGV 69

Query: 53  RESTPTEKVKESHRRVMVANHPDAGGSHYLASKINEAKAIMLRRTKR 99
             +    K++++HRR+M+ NHPD GGS Y+A+KINEAK ++  + K+
Sbjct: 70  SPTANKGKIRDAHRRIMLLNHPDKGGSPYIAAKINEAKDLLEGQAKK 116

Probable component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner. May act as a co-chaperone that stimulate the ATP-dependent activity.

Homo sapiens (taxid: 9606)

>sp|Q5RCP4|DJC15_PONAB DnaJ homolog subfamily C member 15 OS=Pongo abelii GN=DNAJC15 PE=2 SV=1

 Score = 89.7 bits (221), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 46/107 (42%), Positives = 65/107 (60%), Gaps = 11/107 (10%)

Query: 1   MAVAAAAYAGKYGITAWQAF---------KAQTPTARMRKVFEGSFQPVMTRREAAMILG 51
           + VAA A+AG+Y    W+           K  TP+  +   ++G F+  M+RREA +ILG
Sbjct: 45  LGVAAFAFAGRYAFRIWKPLEQVITETAKKISTPS--LSSYYKGGFEKKMSRREAGLILG 102

Query: 52  VRESTPTEKVKESHRRVMVANHPDAGGSHYLASKINEAKAIMLRRTK 98
           V  S    K++ +HRRVM+ NHPD GGS Y+A+KINEAK ++   TK
Sbjct: 103 VSPSAGKAKIRTAHRRVMILNHPDKGGSPYVAAKINEAKDLLETTTK 149

Pongo abelii (taxid: 9601)

>sp|Q9Y5T4|DJC15_HUMAN DnaJ homolog subfamily C member 15 OS=Homo sapiens GN=DNAJC15 PE=1 SV=2

 Score = 89.4 bits (220), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 46/106 (43%), Positives = 66/106 (62%), Gaps = 9/106 (8%)

Query: 1   MAVAAAAYAGKYGITAWQAFKAQTPTARMRKV--------FEGSFQPVMTRREAAMILGV 52
           + VAA A+AG+Y    W+  + Q  T   +K+        ++G F+  M+RREA +ILGV
Sbjct: 45  LGVAALAFAGRYAFRIWKPLE-QVITETAKKISTPSFSSYYKGGFEQKMSRREAGLILGV 103

Query: 53  RESTPTEKVKESHRRVMVANHPDAGGSHYLASKINEAKAIMLRRTK 98
             S    K++ +HRRVM+ NHPD GGS Y+A+KINEAK ++   TK
Sbjct: 104 SPSAGKAKIRTAHRRVMILNHPDKGGSPYVAAKINEAKDLLETTTK 149

Homo sapiens (taxid: 9606)

>sp|Q6PBT7|TIM14_DANRE Mitochondrial import inner membrane translocase subunit TIM14 OS=Danio rerio GN=dnajc19 PE=2 SV=1

 Score = 86.3 bits (212), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 42/106 (39%), Positives = 66/106 (62%), Gaps = 7/106 (6%)

Query: 1   MAVAAAAYAGKYGITAWQAFKAQ-------TPTARMRKVFEGSFQPVMTRREAAMILGVR 53
           + +AAA + G+Y + A +  + Q       + +A     + G F P M RREA++ILGV 
Sbjct: 10  LTLAAAGFTGRYAVRAMKHMEPQVKQALEASKSAFGSGYYRGGFDPKMNRREASLILGVS 69

Query: 54  ESTPTEKVKESHRRVMVANHPDAGGSHYLASKINEAKAIMLRRTKR 99
            +    K++E+HR++M+ NHPD GGS YLA+KINEAK ++  + K+
Sbjct: 70  PTANKTKIREAHRKLMILNHPDRGGSPYLAAKINEAKDLLDGQAKK 115

Probable component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner. May act as a co-chaperone that stimulate the ATP-dependent activity.

Danio rerio (taxid: 7955)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	104
224069344	112	predicted protein [Populus trichocarpa]	1.0	0.928	0.798	2e-41
18403957	112	chaperone DnaJ-domain containing protein	1.0	0.928	0.711	3e-37
297823385	112	DNAJ heat shock N-terminal domain-contai	1.0	0.928	0.682	2e-36
242052047	112	hypothetical protein SORBIDRAFT_03g00540	1.0	0.928	0.692	3e-35
116790633	112	unknown [Picea sitchensis]	0.903	0.839	0.723	4e-35
195639528	112	mitochondrial import inner membrane tran	1.0	0.928	0.682	6e-35
168040967	112	predicted protein [Physcomitrella patens	1.0	0.928	0.711	7e-35
414876263	112	TPA: import inner membrane translocase s	1.0	0.928	0.673	8e-35
239985483	112	mitochondrial import inner membrane tran	1.0	0.928	0.673	9e-35
225439896	110	PREDICTED: mitochondrial import inner me	0.884	0.836	0.744	1e-34

>gi|224069344|ref|XP_002326335.1| predicted protein [Populus trichocarpa] gi|222833528|gb|EEE72005.1| predicted protein [Populus trichocarpa]

 Score =  172 bits (436), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 83/104 (79%), Positives = 91/104 (87%)

Query: 1   MAVAAAAYAGKYGITAWQAFKAQTPTARMRKVFEGSFQPVMTRREAAMILGVRESTPTEK 60
           MAVAA AYAG+YGI AWQAFKA+ PTARMRK +EG FQ VMTRREAA+ILGVREST  +K
Sbjct: 9   MAVAATAYAGRYGIQAWQAFKARPPTARMRKFYEGGFQSVMTRREAALILGVRESTAADK 68

Query: 61  VKESHRRVMVANHPDAGGSHYLASKINEAKAIMLRRTKRSNSAF 104
           VKE+HRRVMVANHPDAGGSHYLASKINEAK I+L +TK   SAF
Sbjct: 69  VKEAHRRVMVANHPDAGGSHYLASKINEAKDILLGKTKGGGSAF 112

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18403957|ref|NP_565824.1| chaperone DnaJ-domain containing protein [Arabidopsis thaliana] gi|75330641|sp|Q8RV04.1|TI141_ARATH RecName: Full=Mitochondrial import inner membrane translocase subunit TIM14-1; AltName: Full=Chaperone DnaJ-domain containing protein 1 gi|20197532|gb|AAM15117.1| expressed protein [Arabidopsis thaliana] gi|20197993|gb|AAM15345.1| expressed protein [Arabidopsis thaliana] gi|21536803|gb|AAM61135.1| DNAJ protein-like [Arabidopsis thaliana] gi|110737575|dbj|BAF00729.1| hypothetical protein [Arabidopsis thaliana] gi|114050699|gb|ABI49499.1| At2g35795 [Arabidopsis thaliana] gi|330254068|gb|AEC09162.1| chaperone DnaJ-domain containing protein [Arabidopsis thaliana]

 Score =  158 bits (400), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 74/104 (71%), Positives = 88/104 (84%)

Query: 1   MAVAAAAYAGKYGITAWQAFKAQTPTARMRKVFEGSFQPVMTRREAAMILGVRESTPTEK 60
           +AVAA A AG+YGI AWQAFKA+ P  +++K +EG FQP MT+REAA+ILGVRES   EK
Sbjct: 9   VAVAATALAGRYGIQAWQAFKARPPRPKIKKFYEGGFQPTMTKREAALILGVRESVAAEK 68

Query: 61  VKESHRRVMVANHPDAGGSHYLASKINEAKAIMLRRTKRSNSAF 104
           VKE+HR+VMVANHPDAGGSH+LASKINEAK +ML +TK S SAF
Sbjct: 69  VKEAHRKVMVANHPDAGGSHFLASKINEAKDVMLGKTKNSGSAF 112

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297823385|ref|XP_002879575.1| DNAJ heat shock N-terminal domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297325414|gb|EFH55834.1| DNAJ heat shock N-terminal domain-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  155 bits (393), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 71/104 (68%), Positives = 88/104 (84%)

Query: 1   MAVAAAAYAGKYGITAWQAFKAQTPTARMRKVFEGSFQPVMTRREAAMILGVRESTPTEK 60
           +AVAA A AG+YGI AWQAFKA+ P  +++K ++G FQP MT+REAA+ILG+R+S   EK
Sbjct: 9   VAVAATALAGRYGIQAWQAFKARPPRPKIKKFYDGGFQPTMTKREAALILGIRQSVAAEK 68

Query: 61  VKESHRRVMVANHPDAGGSHYLASKINEAKAIMLRRTKRSNSAF 104
           VKE+HR+VMVANHPDAGGSH+LASKINEAK +ML +TK S SAF
Sbjct: 69  VKEAHRKVMVANHPDAGGSHFLASKINEAKDVMLGKTKNSGSAF 112

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242052047|ref|XP_002455169.1| hypothetical protein SORBIDRAFT_03g005400 [Sorghum bicolor] gi|241927144|gb|EES00289.1| hypothetical protein SORBIDRAFT_03g005400 [Sorghum bicolor]

 Score =  152 bits (383), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 72/104 (69%), Positives = 85/104 (81%)

Query: 1   MAVAAAAYAGKYGITAWQAFKAQTPTARMRKVFEGSFQPVMTRREAAMILGVRESTPTEK 60
           +AVAA A AG+YGI AWQA+KA+    RMRK +EG FQP+M RREAA+ILGVRE+   EK
Sbjct: 9   LAVAATALAGRYGIQAWQAYKARPIVPRMRKFYEGGFQPMMNRREAALILGVRETANAEK 68

Query: 61  VKESHRRVMVANHPDAGGSHYLASKINEAKAIMLRRTKRSNSAF 104
           VKE+H+RVMVANHPDAGGSHYLASKINEAK ++  +TK   SAF
Sbjct: 69  VKEAHKRVMVANHPDAGGSHYLASKINEAKDVLSGKTKGGGSAF 112

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116790633|gb|ABK25685.1| unknown [Picea sitchensis]

 Score =  151 bits (382), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 68/94 (72%), Positives = 79/94 (84%)

Query: 11  KYGITAWQAFKAQTPTARMRKVFEGSFQPVMTRREAAMILGVRESTPTEKVKESHRRVMV 70
           KYGI AWQAFKA+ PT R+RK +EG FQP MTRREAA+ILG+RE  P +KVKE+HR+VMV
Sbjct: 19  KYGIQAWQAFKARPPTPRLRKFYEGGFQPTMTRREAALILGLREGAPADKVKEAHRKVMV 78

Query: 71  ANHPDAGGSHYLASKINEAKAIMLRRTKRSNSAF 104
           ANHPDAGGS YLASK+NEAK +ML +TK   SAF
Sbjct: 79  ANHPDAGGSDYLASKVNEAKDVMLGKTKSGGSAF 112

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|195639528|gb|ACG39232.1| mitochondrial import inner membrane translocase subunit TIM14 [Zea mays]

 Score =  151 bits (381), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 71/104 (68%), Positives = 84/104 (80%)

Query: 1   MAVAAAAYAGKYGITAWQAFKAQTPTARMRKVFEGSFQPVMTRREAAMILGVRESTPTEK 60
           +AVAA A AG+YG+ AWQA+KA+    RMRK +EG FQP M RREAA+ILGVRE+   EK
Sbjct: 9   LAVAATALAGRYGVQAWQAYKARPIVPRMRKFYEGGFQPTMNRREAALILGVRETANAEK 68

Query: 61  VKESHRRVMVANHPDAGGSHYLASKINEAKAIMLRRTKRSNSAF 104
           VKE+H+RVMVANHPDAGGSHYLASKINEAK ++  +TK   SAF
Sbjct: 69  VKEAHKRVMVANHPDAGGSHYLASKINEAKDVLSGKTKGGGSAF 112

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|168040967|ref|XP_001772964.1| predicted protein [Physcomitrella patens subsp. patens] gi|162675697|gb|EDQ62189.1| predicted protein [Physcomitrella patens subsp. patens]

 Score =  150 bits (380), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 74/104 (71%), Positives = 86/104 (82%)

Query: 1   MAVAAAAYAGKYGITAWQAFKAQTPTARMRKVFEGSFQPVMTRREAAMILGVRESTPTEK 60
           ++VAAAA AGKY I AWQAFKA+  TARMRK +EG FQPVMTRREAA+ILGVRES   +K
Sbjct: 9   LSVAAAAMAGKYSIEAWQAFKARPATARMRKFYEGGFQPVMTRREAALILGVRESAAQDK 68

Query: 61  VKESHRRVMVANHPDAGGSHYLASKINEAKAIMLRRTKRSNSAF 104
           VKE+HRRVM ANHPDAGGS ++ASKINEAK  +L + + S SAF
Sbjct: 69  VKEAHRRVMQANHPDAGGSDFIASKINEAKDHLLGQKRGSGSAF 112

Source: Physcomitrella patens subsp. patens

Species: Physcomitrella patens

Genus: Physcomitrella

Family: Funariaceae

Order: Funariales

Class: Bryopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|414876263|tpg|DAA53394.1| TPA: import inner membrane translocase subunit TIM14 [Zea mays]

 Score =  150 bits (379), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 70/104 (67%), Positives = 84/104 (80%)

Query: 1   MAVAAAAYAGKYGITAWQAFKAQTPTARMRKVFEGSFQPVMTRREAAMILGVRESTPTEK 60
           +A+AA A AG+YG+ AWQA+KA+    RMRK +EG FQP M RREAA+ILGVRE+   EK
Sbjct: 9   LAIAATALAGRYGVQAWQAYKARPIVPRMRKFYEGGFQPTMNRREAALILGVRETANAEK 68

Query: 61  VKESHRRVMVANHPDAGGSHYLASKINEAKAIMLRRTKRSNSAF 104
           VKE+H+RVMVANHPDAGGSHYLASKINEAK ++  +TK   SAF
Sbjct: 69  VKEAHKRVMVANHPDAGGSHYLASKINEAKDVLSGKTKGGGSAF 112

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|239985483|ref|NP_001146932.1| mitochondrial import inner membrane translocase subunit TIM14 [Zea mays] gi|195605332|gb|ACG24496.1| mitochondrial import inner membrane translocase subunit TIM14 [Zea mays]

 Score =  150 bits (379), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 70/104 (67%), Positives = 84/104 (80%)

Query: 1   MAVAAAAYAGKYGITAWQAFKAQTPTARMRKVFEGSFQPVMTRREAAMILGVRESTPTEK 60
           +AVAA A AG+YG+ AWQA+KA+    RMRK +EG FQP M RREAA+ILGVRE+   EK
Sbjct: 9   LAVAATALAGRYGVQAWQAYKARPIVPRMRKFYEGGFQPTMNRREAALILGVRETANAEK 68

Query: 61  VKESHRRVMVANHPDAGGSHYLASKINEAKAIMLRRTKRSNSAF 104
           VKE+H+RVM+ANHPDAGGSHYLASKINEAK ++  +TK   SAF
Sbjct: 69  VKEAHKRVMIANHPDAGGSHYLASKINEAKDVLSGKTKGGGSAF 112

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225439896|ref|XP_002279532.1| PREDICTED: mitochondrial import inner membrane translocase subunit TIM14-like [Vitis vinifera]

 Score =  150 bits (378), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 70/94 (74%), Positives = 82/94 (87%), Gaps = 2/94 (2%)

Query: 11  KYGITAWQAFKAQTPTARMRKVFEGSFQPVMTRREAAMILGVRESTPTEKVKESHRRVMV 70
           +YGI AWQAFKA+ PT  +RK +EG FQP MTRREAA+ILG+RESTP +KVKE+HR+VMV
Sbjct: 19  RYGIQAWQAFKARPPT--LRKFYEGGFQPTMTRREAALILGIRESTPADKVKEAHRKVMV 76

Query: 71  ANHPDAGGSHYLASKINEAKAIMLRRTKRSNSAF 104
           ANHPDAGGSHYLASKINEAK +ML +T+ S SAF
Sbjct: 77  ANHPDAGGSHYLASKINEAKDMMLGKTRGSESAF 110

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	104
TAIR|locus:2828254	112	AT2G35795 [Arabidopsis thalian	0.913	0.848	0.715	1.2e-33
TAIR|locus:2075004	112	AT3G09700 "AT3G09700" [Arabido	0.913	0.848	0.747	5.2e-33
TAIR|locus:2143488	112	AT5G03030 "AT5G03030" [Arabido	0.913	0.848	0.715	6e-32
UNIPROTKB|Q3ZBN8	116	DNAJC19 "Mitochondrial import	0.788	0.706	0.463	2.3e-16
RGD|1307154	149	Dnajc15 "DnaJ (Hsp40) homolog,	0.865	0.604	0.43	3.7e-16
UNIPROTKB|E1BXD6	148	DNAJC15 "Uncharacterized prote	0.855	0.601	0.437	4.7e-16
ZFIN|ZDB-GENE-040801-216	149	dnajc15 "DnaJ (Hsp40) homolog,	0.663	0.463	0.521	6e-16
UNIPROTKB|Q96DA6	116	DNAJC19 "Mitochondrial import	0.788	0.706	0.451	7.7e-16
UNIPROTKB|F1SGA9	116	DNAJC19 "Uncharacterized prote	0.788	0.706	0.451	7.7e-16
MGI|MGI:1913398	149	Dnajc15 "DnaJ (Hsp40) homolog,	0.865	0.604	0.42	7.7e-16

TAIR|locus:2828254 AT2G35795 [Arabidopsis thaliana (taxid:3702)]

 Score = 366 (133.9 bits), Expect = 1.2e-33, P = 1.2e-33
 Identities = 68/95 (71%), Positives = 81/95 (85%)

Query:    10 GKYGITAWQAFKAQTPTARMRKVFEGSFQPVMTRREAAMILGVRESTPTEKVKESHRRVM 69
             G+YGI AWQAFKA+ P  +++K +EG FQP MT+REAA+ILGVRES   EKVKE+HR+VM
Sbjct:    18 GRYGIQAWQAFKARPPRPKIKKFYEGGFQPTMTKREAALILGVRESVAAEKVKEAHRKVM 77

Query:    70 VANHPDAGGSHYLASKINEAKAIMLRRTKRSNSAF 104
             VANHPDAGGSH+LASKINEAK +ML +TK S SAF
Sbjct:    78 VANHPDAGGSHFLASKINEAKDVMLGKTKNSGSAF 112

GO:0005737 "cytoplasm" evidence=ISM

GO:0006457 "protein folding" evidence=ISS

GO:0031072 "heat shock protein binding" evidence=IEA

TAIR|locus:2075004 AT3G09700 "AT3G09700" [Arabidopsis thaliana (taxid:3702)]

 Score = 360 (131.8 bits), Expect = 5.2e-33, P = 5.2e-33
 Identities = 71/95 (74%), Positives = 77/95 (81%)

Query:    10 GKYGITAWQAFKAQTPTARMRKVFEGSFQPVMTRREAAMILGVRESTPTEKVKESHRRVM 69
             GKYGI AWQAFK +    RMRK +EG FQ  M RREAA+ILGVRES   EKVKE+HRRVM
Sbjct:    18 GKYGIEAWQAFKLRPVRPRMRKFYEGGFQATMNRREAALILGVRESVAAEKVKEAHRRVM 77

Query:    70 VANHPDAGGSHYLASKINEAKAIMLRRTKRSNSAF 104
             VANHPDAGGSHYLASKINEAK +ML +TK S SAF
Sbjct:    78 VANHPDAGGSHYLASKINEAKDMMLGKTKNSGSAF 112

GO:0006457 "protein folding" evidence=ISS

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0006333 "chromatin assembly or disassembly" evidence=RCA

TAIR|locus:2143488 AT5G03030 "AT5G03030" [Arabidopsis thaliana (taxid:3702)]

 Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
 Identities = 68/95 (71%), Positives = 78/95 (82%)

Query:    10 GKYGITAWQAFKAQTPTARMRKVFEGSFQPVMTRREAAMILGVRESTPTEKVKESHRRVM 69
             G+YGI AWQAFKA+    RMR+ +EG FQ  MTRREAA+ILGVRES   +KVKE+HRRVM
Sbjct:    18 GRYGILAWQAFKARPRVPRMRRFYEGGFQSSMTRREAALILGVRESVVADKVKEAHRRVM 77

Query:    70 VANHPDAGGSHYLASKINEAKAIMLRRTKRSNSAF 104
             VANHPDAGGSHYLASKINEAK +ML ++  S SAF
Sbjct:    78 VANHPDAGGSHYLASKINEAKDMMLGKSNNSGSAF 112

GO:0006457 "protein folding" evidence=ISS

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0015824 "proline transport" evidence=RCA

UNIPROTKB|Q3ZBN8 DNAJC19 "Mitochondrial import inner membrane translocase subunit TIM14" [Bos taurus (taxid:9913)]

 Score = 203 (76.5 bits), Expect = 2.3e-16, P = 2.3e-16
 Identities = 38/82 (46%), Positives = 57/82 (69%)

Query:    18 QAFKAQTPTARMRKVFEGSFQPVMTRREAAMILGVRESTPTEKVKESHRRVMVANHPDAG 77
             Q F++   TA     + G F+P MT+REAA+ILGV  +    K++++HRR+M+ NHPD G
Sbjct:    35 QVFQSLPKTAFSGGYYRGGFEPKMTKREAALILGVSPTANKAKIRDAHRRIMLLNHPDKG 94

Query:    78 GSHYLASKINEAKAIMLRRTKR 99
             GS Y+A+KINEAK ++  + K+
Sbjct:    95 GSPYIAAKINEAKDLLEGQAKK 116

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

RGD|1307154 Dnajc15 "DnaJ (Hsp40) homolog, subfamily C, member 15" [Rattus norvegicus (taxid:10116)]

 Score = 201 (75.8 bits), Expect = 3.7e-16, P = 3.7e-16
 Identities = 43/100 (43%), Positives = 63/100 (63%)

Query:    10 GKYGITAWQAFKAQTPTARMRKV--------FEGSFQPVMTRREAAMILGVRESTPTEKV 61
             G+Y    W+  + Q  TA  RK+        ++G F+  M+RREA++ILGV  S    K+
Sbjct:    52 GRYAFQIWKPLE-QVLTATARKISSPSFSSYYKGGFEQKMSRREASLILGVSPSAGKAKI 110

Query:    62 KESHRRVMVANHPDAGGSHYLASKINEAKAIMLRRTKRSN 101
             + +H+R+M+ NHPD GGS YLASKINEAK + L  + ++N
Sbjct:   111 RTAHKRIMILNHPDKGGSPYLASKINEAKDL-LEASSKAN 149

GO:0005739 "mitochondrion" evidence=IEA;ISO

UNIPROTKB|E1BXD6 DNAJC15 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
 Identities = 42/96 (43%), Positives = 61/96 (63%)

Query:    10 GKYGITAWQAF-KAQTPTAR------MRKVFEGSFQPVMTRREAAMILGVRESTPTEKVK 62
             G+Y    W+   +A T TA+      +   ++G F+  M+RREA++ILGV  S    K++
Sbjct:    52 GRYAFHLWKPLGQAITETAKKISTSSLSLYYKGGFEQKMSRREASLILGVSPSADKAKIR 111

Query:    63 ESHRRVMVANHPDAGGSHYLASKINEAKAIMLRRTK 98
              +HRR+M+ NHPD GGS YLA+KINEAK ++   TK
Sbjct:   112 AAHRRIMILNHPDKGGSPYLATKINEAKDLLESSTK 147

GO:0005739 "mitochondrion" evidence=IEA

ZFIN|ZDB-GENE-040801-216 dnajc15 "DnaJ (Hsp40) homolog, subfamily C, member 15" [Danio rerio (taxid:7955)]

 Score = 199 (75.1 bits), Expect = 6.0e-16, P = 6.0e-16
 Identities = 36/69 (52%), Positives = 52/69 (75%)

Query:    25 PTARMRKVFEGSFQPVMTRREAAMILGVRESTPTEKVKESHRRVMVANHPDAGGSHYLAS 84
             P++     ++G F+  MTRREA++ILG+  ++   KV+E+HRR+MV NHPD GGS YLA+
Sbjct:    75 PSSSFSAYYKGGFEQKMTRREASLILGISPTSTKTKVREAHRRIMVLNHPDKGGSPYLAA 134

Query:    85 KINEAKAIM 93
             KINEAK ++
Sbjct:   135 KINEAKDLL 143

GO:0048793 "pronephros development" evidence=IEA

UNIPROTKB|Q96DA6 DNAJC19 "Mitochondrial import inner membrane translocase subunit TIM14" [Homo sapiens (taxid:9606)]

 Score = 198 (74.8 bits), Expect = 7.7e-16, P = 7.7e-16
 Identities = 37/82 (45%), Positives = 57/82 (69%)

Query:    18 QAFKAQTPTARMRKVFEGSFQPVMTRREAAMILGVRESTPTEKVKESHRRVMVANHPDAG 77
             Q F++   +A     + G F+P MT+REAA+ILGV  +    K++++HRR+M+ NHPD G
Sbjct:    35 QVFQSLPKSAFSGGYYRGGFEPKMTKREAALILGVSPTANKGKIRDAHRRIMLLNHPDKG 94

Query:    78 GSHYLASKINEAKAIMLRRTKR 99
             GS Y+A+KINEAK ++  + K+
Sbjct:    95 GSPYIAAKINEAKDLLEGQAKK 116

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0006457 "protein folding" evidence=NAS

GO:0007601 "visual perception" evidence=IMP

GO:0016021 "integral to membrane" evidence=NAS

GO:0006626 "protein targeting to mitochondrion" evidence=NAS;TAS

GO:0048806 "genitalia development" evidence=IMP

GO:0044267 "cellular protein metabolic process" evidence=TAS

UNIPROTKB|F1SGA9 DNAJC19 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 198 (74.8 bits), Expect = 7.7e-16, P = 7.7e-16
 Identities = 37/82 (45%), Positives = 57/82 (69%)

Query:    18 QAFKAQTPTARMRKVFEGSFQPVMTRREAAMILGVRESTPTEKVKESHRRVMVANHPDAG 77
             Q F++   +A     + G F+P MT+REAA+ILGV  +    K++++HRR+M+ NHPD G
Sbjct:    35 QVFQSLPKSAFSGGYYRGGFEPKMTKREAALILGVSPTANKGKIRDAHRRIMLLNHPDKG 94

Query:    78 GSHYLASKINEAKAIMLRRTKR 99
             GS Y+A+KINEAK ++  + K+
Sbjct:    95 GSPYIAAKINEAKDLLEGQAKK 116

GO:0048806 "genitalia development" evidence=IEA

GO:0007601 "visual perception" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

MGI|MGI:1913398 Dnajc15 "DnaJ (Hsp40) homolog, subfamily C, member 15" [Mus musculus (taxid:10090)]

 Score = 198 (74.8 bits), Expect = 7.7e-16, P = 7.7e-16
 Identities = 42/100 (42%), Positives = 63/100 (63%)

Query:    10 GKYGITAWQAFKAQTPTARMRKV--------FEGSFQPVMTRREAAMILGVRESTPTEKV 61
             G+Y    W+  + Q  TA  RK+        ++G F+  M++REA++ILGV  S    K+
Sbjct:    52 GRYAFQIWKPLE-QVITATARKISSPSFSSYYKGGFEQKMSKREASLILGVSPSAGKAKI 110

Query:    62 KESHRRVMVANHPDAGGSHYLASKINEAKAIMLRRTKRSN 101
             + +H+R+M+ NHPD GGS YLASKINEAK + L  + ++N
Sbjct:   111 RTAHKRIMILNHPDKGGSPYLASKINEAKDL-LEASSKAN 149

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LYY2	TI143_ARATH	No assigned EC number	0.7127	0.9038	0.8392	no	no
Q5RF34	TIM14_PONAB	No assigned EC number	0.4112	0.9519	0.8534	yes	no
Q96DA6	TIM14_HUMAN	No assigned EC number	0.4112	0.9519	0.8534	yes	no
Q5B4H1	TIM14_EMENI	No assigned EC number	0.4591	0.9230	0.9142	yes	no
Q3ZBN8	TIM14_BOVIN	No assigned EC number	0.4205	0.9519	0.8534	yes	no
Q4WI88	TIM14_ASPFU	No assigned EC number	0.4680	0.8846	0.8761	yes	no
Q54QN1	TIM14_DICDI	No assigned EC number	0.3867	0.9230	0.8495	yes	no
Q9SF33	TI142_ARATH	No assigned EC number	0.7446	0.9038	0.8392	no	no
Q8RV04	TI141_ARATH	No assigned EC number	0.7115	1.0	0.9285	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	104
PTZ00100	116	PTZ00100, PTZ00100, DnaJ chaperone protein; Provis	2e-19
PRK14296	372	PRK14296, PRK14296, chaperone protein DnaJ; Provis	8e-05
smart00271	60	smart00271, DnaJ, DnaJ molecular chaperone homolog	0.001
cd06257	55	cd06257, DnaJ, DnaJ domain or J-domain	0.001
pfam00226	63	pfam00226, DnaJ, DnaJ domain	0.001

>gnl|CDD|240265 PTZ00100, PTZ00100, DnaJ chaperone protein; Provisional

 Score = 76.0 bits (187), Expect = 2e-19
 Identities = 32/109 (29%), Positives = 54/109 (49%), Gaps = 14/109 (12%)

Query: 1   MAVAAAAYAGKYGITAWQAFKAQTPTARMRKV--FEGS------------FQPVMTRREA 46
           +       A +YG    +  K          +  F  S            F+  M++ EA
Sbjct: 8   LTFGGGVLAVRYGYRYLKNQKIFGSNNMSFPLSGFNPSLGSLFLKNDLKGFENPMSKSEA 67

Query: 47  AMILGVRESTPTEKVKESHRRVMVANHPDAGGSHYLASKINEAKAIMLR 95
             IL +  +   E+++E+H+++M+ NHPD GGS Y+ASK+NEAK ++L+
Sbjct: 68  YKILNISPTASKERIREAHKQLMLRNHPDNGGSTYIASKVNEAKDLLLK 116

Length = 116

>gnl|CDD|237666 PRK14296, PRK14296, chaperone protein DnaJ; Provisional

 Score = 39.5 bits (92), Expect = 8e-05
 Identities = 16/63 (25%), Positives = 37/63 (58%), Gaps = 3/63 (4%)

Query: 41  MTRREAAMILGVRESTPTEKVKESHRRVMVANHPD---AGGSHYLASKINEAKAIMLRRT 97
           M +++   +LGV ++   +++++++R++    HPD   +  +H    +INEA  ++L + 
Sbjct: 1   MKKKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKD 60

Query: 98  KRS 100
           KR 
Sbjct: 61  KRK 63

Length = 372

>gnl|CDD|197617 smart00271, DnaJ, DnaJ molecular chaperone homology domain

 Score = 34.1 bits (79), Expect = 0.001
 Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 5/50 (10%)

Query: 49 ILGVRESTPTEKVKESHRRVMVANHPDAGGSHYLAS-----KINEAKAIM 93
          ILGV      +++K+++R++ +  HPD        +     +INEA  ++
Sbjct: 6  ILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVL 55

Length = 60

>gnl|CDD|99751 cd06257, DnaJ, DnaJ domain or J-domain

 Score = 33.7 bits (78), Expect = 0.001
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 4/48 (8%)

Query: 49 ILGVRESTPTEKVKESHRRVMVANHPDAGGSHYLA----SKINEAKAI 92
          ILGV      E++K+++R++ +  HPD       A     +INEA  +
Sbjct: 5  ILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEV 52

DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification. Length = 55

>gnl|CDD|215804 pfam00226, DnaJ, DnaJ domain

 Score = 34.0 bits (79), Expect = 0.001
 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 4/57 (7%)

Query: 49  ILGVRESTPTEKVKESHRRVMVANHPD----AGGSHYLASKINEAKAIMLRRTKRSN 101
           ILGV      E++K+++R++ +  HPD       +     +INEA  ++    KR+ 
Sbjct: 5   ILGVPRDASDEEIKKAYRKLALKYHPDKNPGDPAAEEKFKEINEAYEVLSDPEKRAI 61

DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature. Length = 63

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	104
KOG0723	112	consensus Molecular chaperone (DnaJ superfamily) [	99.93
PTZ00100	116	DnaJ chaperone protein; Provisional	99.93
PF03656	127	Pam16: Pam16; InterPro: IPR005341 The Pam16 protei	99.86
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	99.75
KOG3442	132	consensus Uncharacterized conserved protein [Funct	99.74
PTZ00037	421	DnaJ_C chaperone protein; Provisional	99.69
PHA03102	153	Small T antigen; Reviewed	99.68
KOG0713	336	consensus Molecular chaperone (DnaJ superfamily) [	99.67
PRK14296	372	chaperone protein DnaJ; Provisional	99.64
smart00271	60	DnaJ DnaJ molecular chaperone homology domain.	99.63
cd06257	55	DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat sho	99.61
PF00226	64	DnaJ: DnaJ domain; InterPro: IPR001623 The prokary	99.61
PRK14288	369	chaperone protein DnaJ; Provisional	99.6
PRK14286	372	chaperone protein DnaJ; Provisional	99.59
PRK14279	392	chaperone protein DnaJ; Provisional	99.58
PRK14299	291	chaperone protein DnaJ; Provisional	99.58
PRK14282	369	chaperone protein DnaJ; Provisional	99.57
PRK14287	371	chaperone protein DnaJ; Provisional	99.57
PRK14276	380	chaperone protein DnaJ; Provisional	99.56
KOG0712	337	consensus Molecular chaperone (DnaJ superfamily) [	99.55
PRK14294	366	chaperone protein DnaJ; Provisional	99.55
PRK14285	365	chaperone protein DnaJ; Provisional	99.55
PRK14298	377	chaperone protein DnaJ; Provisional	99.55
PRK10767	371	chaperone protein DnaJ; Provisional	99.54
PRK14301	373	chaperone protein DnaJ; Provisional	99.54
PRK14283	378	chaperone protein DnaJ; Provisional	99.54
PRK14280	376	chaperone protein DnaJ; Provisional	99.54
PRK14297	380	chaperone protein DnaJ; Provisional	99.54
PRK14278	378	chaperone protein DnaJ; Provisional	99.53
PRK14295	389	chaperone protein DnaJ; Provisional	99.53
PRK14277	386	chaperone protein DnaJ; Provisional	99.53
PRK10266	306	curved DNA-binding protein CbpA; Provisional	99.51
PRK14281	397	chaperone protein DnaJ; Provisional	99.51
PRK14291	382	chaperone protein DnaJ; Provisional	99.5
KOG0717	508	consensus Molecular chaperone (DnaJ superfamily) [	99.48
PRK14300	372	chaperone protein DnaJ; Provisional	99.48
KOG0716	279	consensus Molecular chaperone (DnaJ superfamily) [	99.48
PRK14284	391	chaperone protein DnaJ; Provisional	99.47
PRK14289	386	chaperone protein DnaJ; Provisional	99.46
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	99.46
PRK14290	365	chaperone protein DnaJ; Provisional	99.46
PHA02624	647	large T antigen; Provisional	99.46
PRK09430	267	djlA Dna-J like membrane chaperone protein; Provis	99.45
PRK14292	371	chaperone protein DnaJ; Provisional	99.45
KOG0721	230	consensus Molecular chaperone (DnaJ superfamily) [	99.44
KOG0715	288	consensus Molecular chaperone (DnaJ superfamily) [	99.43
PRK14293	374	chaperone protein DnaJ; Provisional	99.41
KOG0718	546	consensus Molecular chaperone (DnaJ superfamily) [	99.4
KOG0691	296	consensus Molecular chaperone (DnaJ superfamily) [	99.37
PTZ00341	1136	Ring-infected erythrocyte surface antigen; Provisi	99.34
COG2214	237	CbpA DnaJ-class molecular chaperone [Posttranslati	99.33
PRK01356	166	hscB co-chaperone HscB; Provisional	99.27
PRK05014	171	hscB co-chaperone HscB; Provisional	99.27
TIGR03835	871	termin_org_DnaJ terminal organelle assembly protei	99.25
PRK00294	173	hscB co-chaperone HscB; Provisional	99.23
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	99.23
KOG0719	264	consensus Molecular chaperone (DnaJ superfamily) [	99.21
PRK03578	176	hscB co-chaperone HscB; Provisional	99.2
KOG0722	329	consensus Molecular chaperone (DnaJ superfamily) [	99.02
KOG0720	490	consensus Molecular chaperone (DnaJ superfamily) [	99.0
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.99
PRK01773	173	hscB co-chaperone HscB; Provisional	98.95
COG5407	610	SEC63 Preprotein translocase subunit Sec63 [Intrac	98.83
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.81
TIGR00714	157	hscB Fe-S protein assembly co-chaperone HscB. This	98.79
KOG0714	306	consensus Molecular chaperone (DnaJ superfamily) [	98.79
KOG1150	250	consensus Predicted molecular chaperone (DnaJ supe	98.7
KOG0568	342	consensus Molecular chaperone (DnaJ superfamily) [	98.58
COG5269	379	ZUO1 Ribosome-associated chaperone zuotin [Transla	97.92
COG1076	174	DjlA DnaJ-domain-containing proteins 1 [Posttransl	97.38
PF13446	62	RPT: A repeated domain in UCH-protein	97.22
KOG3192	168	consensus Mitochondrial J-type chaperone [Posttran	97.08
KOG0431	453	consensus Auxilin-like protein and related protein	96.49
PF11833	194	DUF3353: Protein of unknown function (DUF3353); In	95.55
COG1076	174	DjlA DnaJ-domain-containing proteins 1 [Posttransl	94.46
PF14687	112	DUF4460: Domain of unknown function (DUF4460)	87.7

>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=1.1e-25  Score=147.44  Aligned_cols=96  Identities=54%  Similarity=0.834  Sum_probs=90.5

Q ss_pred             hHhHHHHHHHHHHH----HHHHHHhcCCchhhhhhhcCCCCCCCCHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCC
Q 048549            2 AVAAAAYAGKYGIT----AWQAFKAQTPTARMRKVFEGSFQPVMTRREAAMILGVRESTPTEKVKESHRRVMVANHPDAG   77 (104)
Q Consensus         2 ~~~~~~~~~ra~~~----a~~~~~~~~~~~~~~~~~~~~~~~~m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~   77 (104)
                      +|+++++.||++++    +|+.+...+..+...+|++++|++.|+..||..||||+++++.+.||++||+++..||||+|
T Consensus        10 gvaa~a~ag~~gl~~~~~~~qa~~~~~~~~~~~~~y~GGF~~kMsr~EA~lIL~v~~s~~k~KikeaHrriM~~NHPD~G   89 (112)
T KOG0723|consen   10 GVAALAFAGRYGLWMKTLAKQAFKTLPKGPFFGAFYKGGFEPKMSRREAALILGVTPSLDKDKIKEAHRRIMLANHPDRG   89 (112)
T ss_pred             HHHHHHHhchhhhhchhHHHHHHHHcCCCcchhhhhhcccccccchHHHHHHhCCCccccHHHHHHHHHHHHHcCCCcCC
Confidence            57888999999999    88888888878888999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhcchh
Q 048549           78 GSHYLASKINEAKAIMLRRT   97 (104)
Q Consensus        78 g~~~~~~~i~~Aye~L~~~~   97 (104)
                      ||+|+..+||||+++|....
T Consensus        90 GSPYlAsKINEAKdlLe~~~  109 (112)
T KOG0723|consen   90 GSPYLASKINEAKDLLEGTS  109 (112)
T ss_pred             CCHHHHHHHHHHHHHHhccc
Confidence            99999999999999998653

>PTZ00100 DnaJ chaperone protein; Provisional

Probab=99.93  E-value=7.8e-25  Score=146.24  Aligned_cols=95  Identities=33%  Similarity=0.598  Sum_probs=82.1

Q ss_pred             ChHhHHHHHHHHHHHHHHHHHhcCCch----------hhhhhh----cCCCCCCCCHHHHHHHhCCCCCCChHHHHHHHH
Q 048549            1 MAVAAAAYAGKYGITAWQAFKAQTPTA----------RMRKVF----EGSFQPVMTRREAAMILGVRESTPTEKVKESHR   66 (104)
Q Consensus         1 ~~~~~~~~~~ra~~~a~~~~~~~~~~~----------~~~~~~----~~~~~~~m~~~ea~~iLgl~~~~s~~eIk~~yr   66 (104)
                      |+++++.+++|+++++|++.......+          ..+.++    ..+++..|+.+|||+||||++++|.+||+++||
T Consensus         8 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~f~~~Ms~~eAy~ILGv~~~As~~eIkkaYR   87 (116)
T PTZ00100          8 LTFGGGVLAVRYGYRYLKNQKIFGSNNMSFPLSGFNPSLGSLFLKNDLKGFENPMSKSEAYKILNISPTASKERIREAHK   87 (116)
T ss_pred             HHHhHHHHHHHHHHHHHHHHhhccCccccCCchhhhHHHHHHHhccccccccCCCCHHHHHHHcCCCCCCCHHHHHHHHH
Confidence            356777999999999999877665421          233332    568999999999999999999999999999999


Q ss_pred             HHHHHhCCCCCCCHHHHHHHHHHHHHhcc
Q 048549           67 RVMVANHPDAGGSHYLASKINEAKAIMLR   95 (104)
Q Consensus        67 ~l~~~~HPDk~g~~~~~~~i~~Aye~L~~   95 (104)
                      +|++++|||++|+++.+++|++|||+|.+
T Consensus        88 rLa~~~HPDkgGs~~~~~kIneAyevL~k  116 (116)
T PTZ00100         88 QLMLRNHPDNGGSTYIASKVNEAKDLLLK  116 (116)
T ss_pred             HHHHHhCCCCCCCHHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999964

>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []

Probab=99.86  E-value=4.4e-22  Score=134.97  Aligned_cols=98  Identities=29%  Similarity=0.358  Sum_probs=48.0

Q ss_pred             ChHhHHHHHHHHHHHHHHHHHhcCCch-hh-hhh----hcCCCCCCCCHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCC
Q 048549            1 MAVAAAAYAGKYGITAWQAFKAQTPTA-RM-RKV----FEGSFQPVMTRREAAMILGVRESTPTEKVKESHRRVMVANHP   74 (104)
Q Consensus         1 ~~~~~~~~~~ra~~~a~~~~~~~~~~~-~~-~~~----~~~~~~~~m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HP   74 (104)
                      |+|+|+.++||||.+||||+..+.+.. .. +..    ........||.+||+.||||++..++++|.++|.+|+..|+|
T Consensus         9 iiv~G~~vvgRAf~~AyrQA~aa~~~a~~a~~~a~~~~~a~~~~~~Mtl~EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~   88 (127)
T PF03656_consen    9 IIVTGGQVVGRAFTQAYRQAAAAAQAAAGAGQNASARGAAASNSKGMTLDEARQILNVKEELSREEIQKRYKHLFKANDP   88 (127)
T ss_dssp             ------------------------------------------------HHHHHHHHT--G--SHHHHHHHHHHHHHHT-C
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHhhcCCCCHHHHHHHcCCCCccCHHHHHHHHHHHHhccCC
Confidence            579999999999999999988554221 11 111    111233479999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHhcchhc
Q 048549           75 DAGGSHYLASKINEAKAIMLRRTK   98 (104)
Q Consensus        75 Dk~g~~~~~~~i~~Aye~L~~~~~   98 (104)
                      ++|||+|++++|..|+|+|..+.+
T Consensus        89 ~kGGSfYLQSKV~rAKErl~~El~  112 (127)
T PF03656_consen   89 SKGGSFYLQSKVFRAKERLEQELK  112 (127)
T ss_dssp             CCTS-HHHHHHHHHHHHHHHHHHH
T ss_pred             CcCCCHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999987653

In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=99.75  E-value=1.2e-18  Score=135.32  Aligned_cols=61  Identities=30%  Similarity=0.437  Sum_probs=55.7

Q ss_pred             CCHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCC-C---HHHHHHHHHHHHHhcchhcccC
Q 048549           41 MTRREAAMILGVRESTPTEKVKESHRRVMVANHPDAGG-S---HYLASKINEAKAIMLRRTKRSN  101 (104)
Q Consensus        41 m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g-~---~~~~~~i~~Aye~L~~~~~r~~  101 (104)
                      |...++|+||||+.++|.+|||+|||+|+++||||+|. +   .++|++|++|||+|+++++|+-
T Consensus         1 ~~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~   65 (371)
T COG0484           1 MAKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAA   65 (371)
T ss_pred             CCccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence            45568899999999999999999999999999999986 4   4789999999999999999863

>KOG3442 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.74  E-value=6.4e-18  Score=113.36  Aligned_cols=98  Identities=24%  Similarity=0.311  Sum_probs=82.2

Q ss_pred             ChHhHHHHHHHHHHHHHHHHHhcCCchhhhhh-hcC-------CCCCCCCHHHHHHHhCCCCCCChHHHHHHHHHHHHHh
Q 048549            1 MAVAAAAYAGKYGITAWQAFKAQTPTARMRKV-FEG-------SFQPVMTRREAAMILGVRESTPTEKVKESHRRVMVAN   72 (104)
Q Consensus         1 ~~~~~~~~~~ra~~~a~~~~~~~~~~~~~~~~-~~~-------~~~~~m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~   72 (104)
                      |||.|+.++||||.+||||...+.......+. -+.       .....||.+|+.+||+|++..+.++|.++|.+|+..|
T Consensus         8 iIi~G~qvvgrAf~~A~RQeia~s~~aa~~~~a~k~g~~~~~~~~~~~iTlqEa~qILnV~~~ln~eei~k~yehLFevN   87 (132)
T KOG3442|consen    8 IIIMGSQVVGRAFVQAYRQEIAASQQAAARQAAGKSGTRSAEANSNGKITLQEAQQILNVKEPLNREEIEKRYEHLFEVN   87 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccccccccccccHHHHhhHhCCCCCCCHHHHHHHHHHHHhcc
Confidence            58999999999999999998887644332211 011       1124599999999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHhcchhc
Q 048549           73 HPDAGGSHYLASKINEAKAIMLRRTK   98 (104)
Q Consensus        73 HPDk~g~~~~~~~i~~Aye~L~~~~~   98 (104)
                      .+.+|||+|++++|-.|.|.|..+.+
T Consensus        88 dkskGGSFYLQSKVfRAkErld~El~  113 (132)
T KOG3442|consen   88 DKSKGGSFYLQSKVFRAKERLDEELK  113 (132)
T ss_pred             CcccCcceeehHHHHHHHHHHHHHHH
Confidence            99999999999999999999987655

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=99.69  E-value=3.7e-17  Score=129.22  Aligned_cols=65  Identities=20%  Similarity=0.347  Sum_probs=59.9

Q ss_pred             CCCCCCCHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcchhccc
Q 048549           36 SFQPVMTRREAAMILGVRESTPTEKVKESHRRVMVANHPDAGGSHYLASKINEAKAIMLRRTKRS  100 (104)
Q Consensus        36 ~~~~~m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~~~~~~~i~~Aye~L~~~~~r~  100 (104)
                      .....|...++|+||||++++|.+|||++||+|++++|||++++.+.|++|++||++|+++.+|+
T Consensus        20 ~~~~~~~~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~~e~F~~i~~AYevLsD~~kR~   84 (421)
T PTZ00037         20 RRKREVDNEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGDPEKFKEISRAYEVLSDPEKRK   84 (421)
T ss_pred             cccccccchhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHHhccHHHHH
Confidence            34455667899999999999999999999999999999999999999999999999999999885

>PHA03102 Small T antigen; Reviewed

Probab=99.68  E-value=1.1e-16  Score=111.72  Aligned_cols=60  Identities=20%  Similarity=0.258  Sum_probs=56.8

Q ss_pred             CHHHHHHHhCCCCCC--ChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcchhcccC
Q 048549           42 TRREAAMILGVREST--PTEKVKESHRRVMVANHPDAGGSHYLASKINEAKAIMLRRTKRSN  101 (104)
Q Consensus        42 ~~~ea~~iLgl~~~~--s~~eIk~~yr~l~~~~HPDk~g~~~~~~~i~~Aye~L~~~~~r~~  101 (104)
                      ..++++++|||++++  |.++||++||++++++|||+||+.+.|++||+||++|.++.+|..
T Consensus         3 e~~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg~~e~~k~in~Ay~~L~d~~~r~~   64 (153)
T PHA03102          3 ESKELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGDEEKMKELNTLYKKFRESVKSLR   64 (153)
T ss_pred             hHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCchhHHHHHHHHHHHHHhhHHHhcc
Confidence            357999999999999  999999999999999999999999999999999999999988765

>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.67  E-value=7.1e-17  Score=123.60  Aligned_cols=61  Identities=25%  Similarity=0.405  Sum_probs=55.5

Q ss_pred             CCCHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCCH----HHHHHHHHHHHHhcchhccc
Q 048549           40 VMTRREAAMILGVRESTPTEKVKESHRRVMVANHPDAGGSH----YLASKINEAKAIMLRRTKRS  100 (104)
Q Consensus        40 ~m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~~----~~~~~i~~Aye~L~~~~~r~  100 (104)
                      ..+.++.|+||||+.++|.+|||++||+|++++|||||.+.    +.|++|+.|||+|+++.+|.
T Consensus        12 v~~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk   76 (336)
T KOG0713|consen   12 VLAGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRK   76 (336)
T ss_pred             hhcCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHH
Confidence            34557899999999999999999999999999999998643    78999999999999999986

>PRK14296 chaperone protein DnaJ; Provisional

Probab=99.64  E-value=3e-16  Score=122.29  Aligned_cols=60  Identities=27%  Similarity=0.515  Sum_probs=54.6

Q ss_pred             CCHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCC---CHHHHHHHHHHHHHhcchhccc
Q 048549           41 MTRREAAMILGVRESTPTEKVKESHRRVMVANHPDAGG---SHYLASKINEAKAIMLRRTKRS  100 (104)
Q Consensus        41 m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g---~~~~~~~i~~Aye~L~~~~~r~  100 (104)
                      |+..++|+||||++++|.+||+++||+|++++|||++.   ..+.|++|++||++|+++.+|+
T Consensus         1 m~~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~~~a~~~F~~i~~AyevLsD~~KR~   63 (372)
T PRK14296          1 MKKKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDKRK   63 (372)
T ss_pred             CCCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHhcCHHHhh
Confidence            45568999999999999999999999999999999974   3478999999999999999885

>smart00271 DnaJ DnaJ molecular chaperone homology domain

Probab=99.63  E-value=8.2e-16  Score=90.44  Aligned_cols=53  Identities=25%  Similarity=0.375  Sum_probs=49.1

Q ss_pred             HHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCC-----CHHHHHHHHHHHHHhcchh
Q 048549           45 EAAMILGVRESTPTEKVKESHRRVMVANHPDAGG-----SHYLASKINEAKAIMLRRT   97 (104)
Q Consensus        45 ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g-----~~~~~~~i~~Aye~L~~~~   97 (104)
                      ++|+||||+++++.++|+++|+++++.+|||+++     ..+.|.+|++||++|.++.
T Consensus         2 ~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~   59 (60)
T smart00271        2 DYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPE   59 (60)
T ss_pred             CHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCC
Confidence            5899999999999999999999999999999987     3478999999999999874

>cd06257 DnaJ DnaJ domain or J-domain

Probab=99.61  E-value=1.8e-15  Score=87.49  Aligned_cols=51  Identities=27%  Similarity=0.394  Sum_probs=47.2

Q ss_pred             HHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHhcc
Q 048549           45 EAAMILGVRESTPTEKVKESHRRVMVANHPDAGGS----HYLASKINEAKAIMLR   95 (104)
Q Consensus        45 ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~----~~~~~~i~~Aye~L~~   95 (104)
                      ++|++|||+++++.++|+++|++|++++|||++++    .+.|.+|++||++|++
T Consensus         1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d   55 (55)
T cd06257           1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD   55 (55)
T ss_pred             ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence            47999999999999999999999999999999874    5789999999999974

DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.

>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []

Probab=99.61  E-value=2.3e-15  Score=89.87  Aligned_cols=56  Identities=30%  Similarity=0.453  Sum_probs=51.4

Q ss_pred             HHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCC-CCH----HHHHHHHHHHHHhcchhccc
Q 048549           45 EAAMILGVRESTPTEKVKESHRRVMVANHPDAG-GSH----YLASKINEAKAIMLRRTKRS  100 (104)
Q Consensus        45 ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~-g~~----~~~~~i~~Aye~L~~~~~r~  100 (104)
                      ++|+||||+++++.++|+++|+++++.+|||++ ++.    +.+..|++||++|.++.+|+
T Consensus         1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~   61 (64)
T PF00226_consen    1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRR   61 (64)
T ss_dssp             HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred             ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHH
Confidence            589999999999999999999999999999995 555    78999999999999998774

Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....

>PRK14288 chaperone protein DnaJ; Provisional

Probab=99.60  E-value=1.2e-15  Score=118.69  Aligned_cols=57  Identities=28%  Similarity=0.349  Sum_probs=52.5

Q ss_pred             HHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCC-C---HHHHHHHHHHHHHhcchhccc
Q 048549           44 REAAMILGVRESTPTEKVKESHRRVMVANHPDAGG-S---HYLASKINEAKAIMLRRTKRS  100 (104)
Q Consensus        44 ~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g-~---~~~~~~i~~Aye~L~~~~~r~  100 (104)
                      .++|+||||++++|.+||+++||+|++++|||++. +   .+.|++|++||++|+++.+|+
T Consensus         3 ~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~   63 (369)
T PRK14288          3 LSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRA   63 (369)
T ss_pred             CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHH
Confidence            47899999999999999999999999999999975 3   378999999999999999885

>PRK14286 chaperone protein DnaJ; Provisional

Probab=99.59  E-value=1.4e-15  Score=118.42  Aligned_cols=60  Identities=30%  Similarity=0.404  Sum_probs=54.4

Q ss_pred             CCHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCC-C---HHHHHHHHHHHHHhcchhccc
Q 048549           41 MTRREAAMILGVRESTPTEKVKESHRRVMVANHPDAGG-S---HYLASKINEAKAIMLRRTKRS  100 (104)
Q Consensus        41 m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g-~---~~~~~~i~~Aye~L~~~~~r~  100 (104)
                      |+..++|+||||++++|.+||+++||+|++++|||++. +   .+.|++|++||++|+++.+|+
T Consensus         1 ~~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~   64 (372)
T PRK14286          1 MSERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQ   64 (372)
T ss_pred             CCCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHH
Confidence            45568999999999999999999999999999999975 2   378999999999999998884

>PRK14279 chaperone protein DnaJ; Provisional

Probab=99.58  E-value=1.9e-15  Score=118.47  Aligned_cols=58  Identities=24%  Similarity=0.360  Sum_probs=53.5

Q ss_pred             HHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCC-C---HHHHHHHHHHHHHhcchhccc
Q 048549           43 RREAAMILGVRESTPTEKVKESHRRVMVANHPDAGG-S---HYLASKINEAKAIMLRRTKRS  100 (104)
Q Consensus        43 ~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g-~---~~~~~~i~~Aye~L~~~~~r~  100 (104)
                      ..++|+||||++++|.+||+++||+|++++|||+++ +   .+.|++|++||++|+++.+|+
T Consensus         8 ~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~   69 (392)
T PRK14279          8 EKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRK   69 (392)
T ss_pred             ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhh
Confidence            369999999999999999999999999999999975 3   378999999999999999885

>PRK14299 chaperone protein DnaJ; Provisional

Probab=99.58  E-value=2.5e-15  Score=113.65  Aligned_cols=60  Identities=27%  Similarity=0.422  Sum_probs=54.1

Q ss_pred             CCHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhcchhccc
Q 048549           41 MTRREAAMILGVRESTPTEKVKESHRRVMVANHPDAGGS---HYLASKINEAKAIMLRRTKRS  100 (104)
Q Consensus        41 m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~---~~~~~~i~~Aye~L~~~~~r~  100 (104)
                      |...++|+||||++++|.+||+++||+|++++|||++.+   .+.|++|++||++|+++.+|+
T Consensus         1 m~~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~kr~   63 (291)
T PRK14299          1 MAYKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPEKRR   63 (291)
T ss_pred             CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhcCHHHHH
Confidence            445689999999999999999999999999999999854   378999999999999998774

>PRK14282 chaperone protein DnaJ; Provisional

Probab=99.57  E-value=2.7e-15  Score=116.67  Aligned_cols=60  Identities=25%  Similarity=0.370  Sum_probs=54.1

Q ss_pred             CCHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC-----HHHHHHHHHHHHHhcchhccc
Q 048549           41 MTRREAAMILGVRESTPTEKVKESHRRVMVANHPDAGGS-----HYLASKINEAKAIMLRRTKRS  100 (104)
Q Consensus        41 m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~-----~~~~~~i~~Aye~L~~~~~r~  100 (104)
                      |...++|+||||++++|.+||+++||+|++++|||++..     .+.|++|++||++|+++.+|+
T Consensus         1 ~~~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~   65 (369)
T PRK14282          1 REKKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRA   65 (369)
T ss_pred             CCCCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHH
Confidence            445689999999999999999999999999999999743     368999999999999999885

>PRK14287 chaperone protein DnaJ; Provisional

Probab=99.57  E-value=3.4e-15  Score=116.31  Aligned_cols=60  Identities=23%  Similarity=0.393  Sum_probs=54.1

Q ss_pred             CCHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhcchhccc
Q 048549           41 MTRREAAMILGVRESTPTEKVKESHRRVMVANHPDAGGS---HYLASKINEAKAIMLRRTKRS  100 (104)
Q Consensus        41 m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~---~~~~~~i~~Aye~L~~~~~r~  100 (104)
                      |...++|++|||++++|.+||+++||+|++++|||++.+   .+.|++|++||++|+++.+|+
T Consensus         1 ~~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~~~~f~~i~~Ay~~L~d~~kR~   63 (371)
T PRK14287          1 MSKRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQKKA   63 (371)
T ss_pred             CCCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCcHhHHH
Confidence            344689999999999999999999999999999999854   368999999999999998885

>PRK14276 chaperone protein DnaJ; Provisional

Probab=99.56  E-value=5.8e-15  Score=115.24  Aligned_cols=60  Identities=23%  Similarity=0.319  Sum_probs=54.3

Q ss_pred             CCHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhcchhccc
Q 048549           41 MTRREAAMILGVRESTPTEKVKESHRRVMVANHPDAGGS---HYLASKINEAKAIMLRRTKRS  100 (104)
Q Consensus        41 m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~---~~~~~~i~~Aye~L~~~~~r~  100 (104)
                      |...++|+||||++++|.+||+++||+|++++|||++.+   .+.|++|++||++|+++.+|+
T Consensus         1 ~~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kR~   63 (380)
T PRK14276          1 MNNTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQKRA   63 (380)
T ss_pred             CCCCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhcCHhhhh
Confidence            344689999999999999999999999999999999754   478999999999999999885

>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.55  E-value=4.1e-15  Score=114.51  Aligned_cols=57  Identities=25%  Similarity=0.359  Sum_probs=52.7

Q ss_pred             HHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCCH-HHHHHHHHHHHHhcchhccc
Q 048549           44 REAAMILGVRESTPTEKVKESHRRVMVANHPDAGGSH-YLASKINEAKAIMLRRTKRS  100 (104)
Q Consensus        44 ~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~~-~~~~~i~~Aye~L~~~~~r~  100 (104)
                      ...|+||||++++|.+||+++||+|+++||||||.+. +.|++|.+|||+|+++.+|.
T Consensus         4 ~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~~~ekfkei~~AyevLsd~ekr~   61 (337)
T KOG0712|consen    4 TKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPDAGEKFKEISQAYEVLSDPEKRE   61 (337)
T ss_pred             cccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHHHH
Confidence            3568999999999999999999999999999998665 89999999999999998874

>PRK14294 chaperone protein DnaJ; Provisional

Probab=99.55  E-value=6.1e-15  Score=114.59  Aligned_cols=60  Identities=30%  Similarity=0.443  Sum_probs=54.4

Q ss_pred             CCHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHhcchhccc
Q 048549           41 MTRREAAMILGVRESTPTEKVKESHRRVMVANHPDAGGS----HYLASKINEAKAIMLRRTKRS  100 (104)
Q Consensus        41 m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~----~~~~~~i~~Aye~L~~~~~r~  100 (104)
                      |+..++|+||||++++|.+||+++||+|++++|||++.+    .+.|++|++||++|+++.+|+
T Consensus         1 ~~~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~   64 (366)
T PRK14294          1 MVKRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRG   64 (366)
T ss_pred             CCCCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHH
Confidence            455789999999999999999999999999999999853    378999999999999998875

>PRK14285 chaperone protein DnaJ; Provisional

Probab=99.55  E-value=6.2e-15  Score=114.61  Aligned_cols=57  Identities=23%  Similarity=0.471  Sum_probs=52.2

Q ss_pred             HHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHhcchhccc
Q 048549           44 REAAMILGVRESTPTEKVKESHRRVMVANHPDAGGS----HYLASKINEAKAIMLRRTKRS  100 (104)
Q Consensus        44 ~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~----~~~~~~i~~Aye~L~~~~~r~  100 (104)
                      .++|+||||++++|.+||+++||+|++++|||++++    .+.|++|++||++|+++.+|.
T Consensus         3 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~   63 (365)
T PRK14285          3 RDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRA   63 (365)
T ss_pred             CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhH
Confidence            578999999999999999999999999999999753    267999999999999998874

>PRK14298 chaperone protein DnaJ; Provisional

Probab=99.55  E-value=7.9e-15  Score=114.49  Aligned_cols=58  Identities=28%  Similarity=0.424  Sum_probs=53.2

Q ss_pred             HHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhcchhccc
Q 048549           43 RREAAMILGVRESTPTEKVKESHRRVMVANHPDAGGS---HYLASKINEAKAIMLRRTKRS  100 (104)
Q Consensus        43 ~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~---~~~~~~i~~Aye~L~~~~~r~  100 (104)
                      ..++|+||||++++|.+||+++||+|++++|||++.+   .+.|++|++||++|+++.+|+
T Consensus         4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~kR~   64 (377)
T PRK14298          4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDAEKRA   64 (377)
T ss_pred             CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHHHhcchHhhh
Confidence            4589999999999999999999999999999999754   368999999999999998875

>PRK10767 chaperone protein DnaJ; Provisional

Probab=99.54  E-value=6.8e-15  Score=114.40  Aligned_cols=60  Identities=25%  Similarity=0.437  Sum_probs=53.8

Q ss_pred             CCHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCC-CH---HHHHHHHHHHHHhcchhccc
Q 048549           41 MTRREAAMILGVRESTPTEKVKESHRRVMVANHPDAGG-SH---YLASKINEAKAIMLRRTKRS  100 (104)
Q Consensus        41 m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g-~~---~~~~~i~~Aye~L~~~~~r~  100 (104)
                      |...++|+||||++++|.+||+++||+|++++|||+++ +.   +.|.+|++||++|+++.+|.
T Consensus         1 ~~~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~   64 (371)
T PRK10767          1 MAKRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRA   64 (371)
T ss_pred             CCCCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhh
Confidence            44568999999999999999999999999999999975 32   68999999999999998875

>PRK14301 chaperone protein DnaJ; Provisional

Probab=99.54  E-value=7.3e-15  Score=114.49  Aligned_cols=60  Identities=23%  Similarity=0.407  Sum_probs=53.9

Q ss_pred             CCHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHhcchhccc
Q 048549           41 MTRREAAMILGVRESTPTEKVKESHRRVMVANHPDAGGS----HYLASKINEAKAIMLRRTKRS  100 (104)
Q Consensus        41 m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~----~~~~~~i~~Aye~L~~~~~r~  100 (104)
                      |+..++|+||||++++|.++|+++||+|++++|||++.+    .+.|++|++||++|+++.+|+
T Consensus         1 ~~~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~   64 (373)
T PRK14301          1 MSQRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRA   64 (373)
T ss_pred             CCCCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhh
Confidence            344689999999999999999999999999999999753    258999999999999999885

>PRK14283 chaperone protein DnaJ; Provisional

Probab=99.54  E-value=7.8e-15  Score=114.41  Aligned_cols=60  Identities=25%  Similarity=0.393  Sum_probs=54.2

Q ss_pred             CCHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCC---CHHHHHHHHHHHHHhcchhccc
Q 048549           41 MTRREAAMILGVRESTPTEKVKESHRRVMVANHPDAGG---SHYLASKINEAKAIMLRRTKRS  100 (104)
Q Consensus        41 m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g---~~~~~~~i~~Aye~L~~~~~r~  100 (104)
                      |...++|++|||++++|.+||+++||+|++++|||++.   ..+.|++|++||++|+++.+|.
T Consensus         2 ~~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~~Lsd~~kR~   64 (378)
T PRK14283          2 AEKRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDDEKRQ   64 (378)
T ss_pred             CCcCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhchhHHHH
Confidence            34568999999999999999999999999999999974   4578999999999999998874

>PRK14280 chaperone protein DnaJ; Provisional

Probab=99.54  E-value=7.8e-15  Score=114.39  Aligned_cols=60  Identities=27%  Similarity=0.430  Sum_probs=54.1

Q ss_pred             CCHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhcchhccc
Q 048549           41 MTRREAAMILGVRESTPTEKVKESHRRVMVANHPDAGGS---HYLASKINEAKAIMLRRTKRS  100 (104)
Q Consensus        41 m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~---~~~~~~i~~Aye~L~~~~~r~  100 (104)
                      |...++|+||||++++|.+||+++||+|++++|||++.+   .+.|++|++||++|+++.+|+
T Consensus         1 ~~~~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kr~   63 (376)
T PRK14280          1 MAKRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQKRA   63 (376)
T ss_pred             CCCCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhccHhHHH
Confidence            344689999999999999999999999999999999743   478999999999999998875

>PRK14297 chaperone protein DnaJ; Provisional

Probab=99.54  E-value=1e-14  Score=113.86  Aligned_cols=59  Identities=20%  Similarity=0.416  Sum_probs=53.5

Q ss_pred             CHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHhcchhccc
Q 048549           42 TRREAAMILGVRESTPTEKVKESHRRVMVANHPDAGGS----HYLASKINEAKAIMLRRTKRS  100 (104)
Q Consensus        42 ~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~----~~~~~~i~~Aye~L~~~~~r~  100 (104)
                      ...++|++|||++++|.++|+++||+|++++|||++.+    .+.|++|++||++|+++.+|+
T Consensus         2 ~~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~   64 (380)
T PRK14297          2 ASKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKA   64 (380)
T ss_pred             CCCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhC
Confidence            34689999999999999999999999999999999753    368999999999999999886

>PRK14278 chaperone protein DnaJ; Provisional

Probab=99.53  E-value=8.8e-15  Score=114.21  Aligned_cols=57  Identities=23%  Similarity=0.320  Sum_probs=52.7

Q ss_pred             HHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCCH---HHHHHHHHHHHHhcchhccc
Q 048549           44 REAAMILGVRESTPTEKVKESHRRVMVANHPDAGGSH---YLASKINEAKAIMLRRTKRS  100 (104)
Q Consensus        44 ~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~~---~~~~~i~~Aye~L~~~~~r~  100 (104)
                      .++|+||||++++|.+||+++||+|++++|||++++.   +.|++|++||++|+++.+|+
T Consensus         3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~~~a~~~f~~i~~Ay~vL~d~~~r~   62 (378)
T PRK14278          3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDPEKRR   62 (378)
T ss_pred             CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHHHHhchhhhhh
Confidence            4789999999999999999999999999999998764   57999999999999998875

>PRK14295 chaperone protein DnaJ; Provisional

Probab=99.53  E-value=1.3e-14  Score=113.64  Aligned_cols=58  Identities=24%  Similarity=0.384  Sum_probs=52.7

Q ss_pred             HHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHhcchhccc
Q 048549           43 RREAAMILGVRESTPTEKVKESHRRVMVANHPDAGGS----HYLASKINEAKAIMLRRTKRS  100 (104)
Q Consensus        43 ~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~----~~~~~~i~~Aye~L~~~~~r~  100 (104)
                      ..++|+||||++++|.+||+++||+|++++|||++.+    .+.|++|++||++|+++.+|+
T Consensus         8 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~   69 (389)
T PRK14295          8 EKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRK   69 (389)
T ss_pred             ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHH
Confidence            3689999999999999999999999999999999742    378999999999999998774

>PRK14277 chaperone protein DnaJ; Provisional

Probab=99.53  E-value=1.2e-14  Score=113.68  Aligned_cols=57  Identities=32%  Similarity=0.427  Sum_probs=52.4

Q ss_pred             HHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHhcchhccc
Q 048549           44 REAAMILGVRESTPTEKVKESHRRVMVANHPDAGGS----HYLASKINEAKAIMLRRTKRS  100 (104)
Q Consensus        44 ~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~----~~~~~~i~~Aye~L~~~~~r~  100 (104)
                      .++|+||||++++|.+||+++||+|++++|||++.+    .+.|++|++||++|+++.+|.
T Consensus         5 ~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~   65 (386)
T PRK14277          5 KDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRA   65 (386)
T ss_pred             CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHH
Confidence            589999999999999999999999999999999752    368999999999999998874

>PRK10266 curved DNA-binding protein CbpA; Provisional

Probab=99.51  E-value=1.9e-14  Score=109.45  Aligned_cols=60  Identities=22%  Similarity=0.365  Sum_probs=54.0

Q ss_pred             CCHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCC---CHHHHHHHHHHHHHhcchhccc
Q 048549           41 MTRREAAMILGVRESTPTEKVKESHRRVMVANHPDAGG---SHYLASKINEAKAIMLRRTKRS  100 (104)
Q Consensus        41 m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g---~~~~~~~i~~Aye~L~~~~~r~  100 (104)
                      |+..++|++|||++++|.+||+++||+|++++|||++.   ..+.|++|++||++|+++.+|+
T Consensus         1 ~~~~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~~~~~~~f~~i~~Ay~~L~~~~kr~   63 (306)
T PRK10266          1 MELKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRA   63 (306)
T ss_pred             CCcCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhhhHHHHH
Confidence            44568999999999999999999999999999999974   4478999999999999998774

>PRK14281 chaperone protein DnaJ; Provisional

Probab=99.51  E-value=2.2e-14  Score=112.54  Aligned_cols=57  Identities=26%  Similarity=0.432  Sum_probs=52.4

Q ss_pred             HHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHhcchhccc
Q 048549           44 REAAMILGVRESTPTEKVKESHRRVMVANHPDAGGS----HYLASKINEAKAIMLRRTKRS  100 (104)
Q Consensus        44 ~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~----~~~~~~i~~Aye~L~~~~~r~  100 (104)
                      .++|+||||++++|.++|+++||+|++++|||++++    .+.|++|++||++|+++.+|+
T Consensus         3 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~   63 (397)
T PRK14281          3 RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRR   63 (397)
T ss_pred             CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhh
Confidence            488999999999999999999999999999999853    378999999999999998775

>PRK14291 chaperone protein DnaJ; Provisional

Probab=99.50  E-value=3.6e-14  Score=110.87  Aligned_cols=57  Identities=30%  Similarity=0.408  Sum_probs=52.6

Q ss_pred             HHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhcchhccc
Q 048549           44 REAAMILGVRESTPTEKVKESHRRVMVANHPDAGGS---HYLASKINEAKAIMLRRTKRS  100 (104)
Q Consensus        44 ~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~---~~~~~~i~~Aye~L~~~~~r~  100 (104)
                      .++|+||||++++|.++|+++||+|++++|||++.+   .+.|++|++||++|+++.+|+
T Consensus         3 ~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vLsd~~kR~   62 (382)
T PRK14291          3 KDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPEKRK   62 (382)
T ss_pred             CCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhcCHHHHH
Confidence            478999999999999999999999999999999853   478999999999999998875

>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.48  E-value=5.9e-14  Score=111.25  Aligned_cols=59  Identities=20%  Similarity=0.341  Sum_probs=54.1

Q ss_pred             CHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCCH-----HHHHHHHHHHHHhcchhccc
Q 048549           42 TRREAAMILGVRESTPTEKVKESHRRVMVANHPDAGGSH-----YLASKINEAKAIMLRRTKRS  100 (104)
Q Consensus        42 ~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~~-----~~~~~i~~Aye~L~~~~~r~  100 (104)
                      ....+|++|||+.+++.++|+++||+|++++|||++++.     +.|+.|+.||++|++|+.|+
T Consensus         6 ~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~   69 (508)
T KOG0717|consen    6 KKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERA   69 (508)
T ss_pred             hhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhh
Confidence            456899999999999999999999999999999998764     68999999999999998874

>PRK14300 chaperone protein DnaJ; Provisional

Probab=99.48  E-value=6.2e-14  Score=109.21  Aligned_cols=57  Identities=23%  Similarity=0.347  Sum_probs=52.2

Q ss_pred             HHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhcchhccc
Q 048549           44 REAAMILGVRESTPTEKVKESHRRVMVANHPDAGGS---HYLASKINEAKAIMLRRTKRS  100 (104)
Q Consensus        44 ~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~---~~~~~~i~~Aye~L~~~~~r~  100 (104)
                      .++|+||||++++|.+||+++||+|++++|||++.+   .+.|++|++||++|+++.+|+
T Consensus         3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~   62 (372)
T PRK14300          3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQKRA   62 (372)
T ss_pred             CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhhhHhHhh
Confidence            588999999999999999999999999999999743   468999999999999998775

>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.48  E-value=1.2e-13  Score=103.48  Aligned_cols=59  Identities=29%  Similarity=0.450  Sum_probs=54.1

Q ss_pred             CHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHhcchhccc
Q 048549           42 TRREAAMILGVRESTPTEKVKESHRRVMVANHPDAGGS----HYLASKINEAKAIMLRRTKRS  100 (104)
Q Consensus        42 ~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~----~~~~~~i~~Aye~L~~~~~r~  100 (104)
                      ...+.|++|||+++++.++|+++||+|++++|||++|+    .++|.+||.||++|+++.+|.
T Consensus        29 ~~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~   91 (279)
T KOG0716|consen   29 IRLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRN   91 (279)
T ss_pred             chhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhh
Confidence            36789999999999999999999999999999999876    378999999999999998873

>PRK14284 chaperone protein DnaJ; Provisional

Probab=99.47  E-value=6.2e-14  Score=109.84  Aligned_cols=56  Identities=27%  Similarity=0.428  Sum_probs=51.5

Q ss_pred             HHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHhcchhccc
Q 048549           45 EAAMILGVRESTPTEKVKESHRRVMVANHPDAGGS----HYLASKINEAKAIMLRRTKRS  100 (104)
Q Consensus        45 ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~----~~~~~~i~~Aye~L~~~~~r~  100 (104)
                      ++|+||||++++|.+||+++||+|++++|||++.+    .+.|++|++||++|+++.+|.
T Consensus         2 d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~   61 (391)
T PRK14284          2 DYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRE   61 (391)
T ss_pred             CHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHH
Confidence            68999999999999999999999999999999853    368999999999999998874

>PRK14289 chaperone protein DnaJ; Provisional

Probab=99.46  E-value=7.5e-14  Score=109.11  Aligned_cols=60  Identities=23%  Similarity=0.374  Sum_probs=53.9

Q ss_pred             CCHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCC-C---HHHHHHHHHHHHHhcchhccc
Q 048549           41 MTRREAAMILGVRESTPTEKVKESHRRVMVANHPDAGG-S---HYLASKINEAKAIMLRRTKRS  100 (104)
Q Consensus        41 m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g-~---~~~~~~i~~Aye~L~~~~~r~  100 (104)
                      |...++|++|||++++|.+||+++||+|++++|||++. +   .+.|++|++||++|+++.+|+
T Consensus         2 ~~~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~   65 (386)
T PRK14289          2 AEKRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRS   65 (386)
T ss_pred             CccCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHH
Confidence            34468999999999999999999999999999999975 3   368999999999999998875

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=99.46  E-value=8.9e-14  Score=107.45  Aligned_cols=56  Identities=29%  Similarity=0.407  Sum_probs=51.4

Q ss_pred             HHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhcchhccc
Q 048549           45 EAAMILGVRESTPTEKVKESHRRVMVANHPDAGGS---HYLASKINEAKAIMLRRTKRS  100 (104)
Q Consensus        45 ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~---~~~~~~i~~Aye~L~~~~~r~  100 (104)
                      ++|+||||++++|.++|+++||+|++++|||++.+   .+.|++|++||++|+++.+|.
T Consensus         1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~   59 (354)
T TIGR02349         1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEKRA   59 (354)
T ss_pred             ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhhChHHHH
Confidence            47999999999999999999999999999999853   478999999999999998875

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>PRK14290 chaperone protein DnaJ; Provisional

Probab=99.46  E-value=8.6e-14  Score=108.15  Aligned_cols=57  Identities=26%  Similarity=0.359  Sum_probs=52.1

Q ss_pred             HHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC-H----HHHHHHHHHHHHhcchhccc
Q 048549           44 REAAMILGVRESTPTEKVKESHRRVMVANHPDAGGS-H----YLASKINEAKAIMLRRTKRS  100 (104)
Q Consensus        44 ~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~-~----~~~~~i~~Aye~L~~~~~r~  100 (104)
                      .++|+||||++++|.+||+++||+|++++|||++.+ .    +.|++|++||++|+++.+|+
T Consensus         3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~   64 (365)
T PRK14290          3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRR   64 (365)
T ss_pred             CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhh
Confidence            478999999999999999999999999999999753 2    78999999999999998874

>PHA02624 large T antigen; Provisional

Probab=99.46  E-value=1.5e-13  Score=112.56  Aligned_cols=60  Identities=18%  Similarity=0.263  Sum_probs=56.4

Q ss_pred             HHHHHHHhCCCCCC--ChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcchhcccCC
Q 048549           43 RREAAMILGVREST--PTEKVKESHRRVMVANHPDAGGSHYLASKINEAKAIMLRRTKRSNS  102 (104)
Q Consensus        43 ~~ea~~iLgl~~~~--s~~eIk~~yr~l~~~~HPDk~g~~~~~~~i~~Aye~L~~~~~r~~~  102 (104)
                      .+++|++|||++++  +.++|+++||++++++|||+||+.+.|++|++||++|.++.++...
T Consensus        10 ~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgGdeekfk~Ln~AYevL~d~~k~~r~   71 (647)
T PHA02624         10 SKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGGDEEKMKRLNSLYKKLQEGVKSARQ   71 (647)
T ss_pred             HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCcHHHHHHHHHHHHHHhcHHHhhhc
Confidence            47899999999999  9999999999999999999999999999999999999998877653

>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional

Probab=99.45  E-value=2.2e-13  Score=102.27  Aligned_cols=58  Identities=29%  Similarity=0.417  Sum_probs=51.9

Q ss_pred             CCCCHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCC---C-C-------HHHHHHHHHHHHHhcch
Q 048549           39 PVMTRREAAMILGVRESTPTEKVKESHRRVMVANHPDAG---G-S-------HYLASKINEAKAIMLRR   96 (104)
Q Consensus        39 ~~m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~---g-~-------~~~~~~i~~Aye~L~~~   96 (104)
                      ..++..++|++|||++++|.++||++||+|++++|||+.   | +       .+.+++|++||++|++.
T Consensus       195 ~~~~~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~~  263 (267)
T PRK09430        195 RGPTLEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKKQ  263 (267)
T ss_pred             CCCcHHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHh
Confidence            368899999999999999999999999999999999994   2 2       25899999999999874

>PRK14292 chaperone protein DnaJ; Provisional

Probab=99.45  E-value=1.6e-13  Score=106.74  Aligned_cols=56  Identities=27%  Similarity=0.430  Sum_probs=51.9

Q ss_pred             HHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhcchhccc
Q 048549           45 EAAMILGVRESTPTEKVKESHRRVMVANHPDAGGS---HYLASKINEAKAIMLRRTKRS  100 (104)
Q Consensus        45 ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~---~~~~~~i~~Aye~L~~~~~r~  100 (104)
                      ++|+||||++++|.++|+++||+|++++|||++++   .+.|.+|++||++|+++.+|+
T Consensus         3 d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~~~a~~~~~~i~~Ay~vL~d~~~r~   61 (371)
T PRK14292          3 DYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEKRA   61 (371)
T ss_pred             ChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHhcchhhhh
Confidence            68999999999999999999999999999999864   478999999999999998874

>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.44  E-value=1.3e-13  Score=100.50  Aligned_cols=63  Identities=22%  Similarity=0.366  Sum_probs=55.5

Q ss_pred             CCCCHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCC----CCCHHHHHHHHHHHHHhcchhcccC
Q 048549           39 PVMTRREAAMILGVRESTPTEKVKESHRRVMVANHPDA----GGSHYLASKINEAKAIMLRRTKRSN  101 (104)
Q Consensus        39 ~~m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk----~g~~~~~~~i~~Aye~L~~~~~r~~  101 (104)
                      ..+..-++++||||++++|..|||++||+|.+++||||    +++.+.+..|+.||+.|.++..|.+
T Consensus        94 ~~~~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sreN  160 (230)
T KOG0721|consen   94 RERQKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSREN  160 (230)
T ss_pred             HHhhcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhHHH
Confidence            33444577999999999999999999999999999999    5777889999999999999887754

>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.43  E-value=1.7e-13  Score=103.95  Aligned_cols=62  Identities=23%  Similarity=0.392  Sum_probs=55.1

Q ss_pred             CCCCHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCC---CHHHHHHHHHHHHHhcchhccc
Q 048549           39 PVMTRREAAMILGVRESTPTEKVKESHRRVMVANHPDAGG---SHYLASKINEAKAIMLRRTKRS  100 (104)
Q Consensus        39 ~~m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g---~~~~~~~i~~Aye~L~~~~~r~  100 (104)
                      ..++.+++|+||||+.+++..||+.+|++|++++|||.+-   ....|++|.+|||+|+++.+|.
T Consensus        38 ~~~~~~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~~a~~kF~eI~~AYEiLsd~eKR~  102 (288)
T KOG0715|consen   38 RIISKEDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDKEASKKFKEISEAYEILSDEEKRQ  102 (288)
T ss_pred             ccCCCcchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHHHHhcCHHHHH
Confidence            3345558999999999999999999999999999999863   4578999999999999998875

>PRK14293 chaperone protein DnaJ; Provisional

Probab=99.41  E-value=2.9e-13  Score=105.47  Aligned_cols=57  Identities=25%  Similarity=0.344  Sum_probs=52.3

Q ss_pred             HHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhcchhccc
Q 048549           44 REAAMILGVRESTPTEKVKESHRRVMVANHPDAGGS---HYLASKINEAKAIMLRRTKRS  100 (104)
Q Consensus        44 ~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~---~~~~~~i~~Aye~L~~~~~r~  100 (104)
                      .++|+||||++++|.++|+++||+|++++|||++.+   .+.|.+|++||++|+++.+|+
T Consensus         3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~vL~~~~~R~   62 (374)
T PRK14293          3 ADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPETRA   62 (374)
T ss_pred             CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHHHHHHhchHHHH
Confidence            478999999999999999999999999999999743   478999999999999998874

>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.40  E-value=5.8e-13  Score=105.93  Aligned_cols=60  Identities=22%  Similarity=0.297  Sum_probs=54.7

Q ss_pred             CCHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCCH-------HHHHHHHHHHHHhcchhccc
Q 048549           41 MTRREAAMILGVRESTPTEKVKESHRRVMVANHPDAGGSH-------YLASKINEAKAIMLRRTKRS  100 (104)
Q Consensus        41 m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~~-------~~~~~i~~Aye~L~~~~~r~  100 (104)
                      ....|.|.+|||++++|.+||+++||++.+.+||||.-|+       +.|++|.+|||+|+|+++|+
T Consensus         6 ~~e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRa   72 (546)
T KOG0718|consen    6 LDEIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRA   72 (546)
T ss_pred             cchhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHH
Confidence            3446999999999999999999999999999999998665       57999999999999999985

>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.37  E-value=8.9e-13  Score=100.32  Aligned_cols=58  Identities=19%  Similarity=0.326  Sum_probs=53.3

Q ss_pred             HHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCC-CH---HHHHHHHHHHHHhcchhccc
Q 048549           43 RREAAMILGVRESTPTEKVKESHRRVMVANHPDAGG-SH---YLASKINEAKAIMLRRTKRS  100 (104)
Q Consensus        43 ~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g-~~---~~~~~i~~Aye~L~~~~~r~  100 (104)
                      ..|+|+||||+++++..+|+++||..++++|||||. |+   +.|+.|.+||++|.++..|.
T Consensus         4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~   65 (296)
T KOG0691|consen    4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRA   65 (296)
T ss_pred             cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHH
Confidence            468999999999999999999999999999999984 44   68999999999999998875

>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional

Probab=99.34  E-value=1.4e-12  Score=110.79  Aligned_cols=63  Identities=21%  Similarity=0.131  Sum_probs=55.9

Q ss_pred             CCCCCHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhcchhccc
Q 048549           38 QPVMTRREAAMILGVRESTPTEKVKESHRRVMVANHPDAGGS---HYLASKINEAKAIMLRRTKRS  100 (104)
Q Consensus        38 ~~~m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~---~~~~~~i~~Aye~L~~~~~r~  100 (104)
                      ...+...++|+||||++++|..+|+++||+|++++|||++.+   ...|++|++||++|+++.+|+
T Consensus       567 t~~~~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~~A~ekFq~I~EAYeVLSDp~kRk  632 (1136)
T PTZ00341        567 TIEIPDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGNEGFHKFKKINEAYQILGDIDKKK  632 (1136)
T ss_pred             cccCCCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCCHHHHH
Confidence            334455799999999999999999999999999999999754   367999999999999999886

>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=99.33  E-value=3e-12  Score=89.50  Aligned_cols=59  Identities=27%  Similarity=0.354  Sum_probs=53.3

Q ss_pred             CHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCC-CH----HHHHHHHHHHHHhcchhccc
Q 048549           42 TRREAAMILGVRESTPTEKVKESHRRVMVANHPDAGG-SH----YLASKINEAKAIMLRRTKRS  100 (104)
Q Consensus        42 ~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g-~~----~~~~~i~~Aye~L~~~~~r~  100 (104)
                      ...+.|+||||+++++..||+++||++++++|||++. +.    +.|..|++||++|+++.+|.
T Consensus         4 ~~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~   67 (237)
T COG2214           4 DLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRA   67 (237)
T ss_pred             hhhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHH
Confidence            3468899999999999999999999999999999975 33    78999999999999998875

>PRK01356 hscB co-chaperone HscB; Provisional

Probab=99.27  E-value=9.8e-12  Score=87.71  Aligned_cols=56  Identities=21%  Similarity=0.295  Sum_probs=49.2

Q ss_pred             HHHHHhCCCCC--CChHHHHHHHHHHHHHhCCCCCCCH-------HHHHHHHHHHHHhcchhccc
Q 048549           45 EAAMILGVRES--TPTEKVKESHRRVMVANHPDAGGSH-------YLASKINEAKAIMLRRTKRS  100 (104)
Q Consensus        45 ea~~iLgl~~~--~s~~eIk~~yr~l~~~~HPDk~g~~-------~~~~~i~~Aye~L~~~~~r~  100 (104)
                      ++|++|||++.  ++..+|+++|++|.+++|||+..+.       +.+..||+||++|++|.+|+
T Consensus         3 ~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra   67 (166)
T PRK01356          3 NYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRA   67 (166)
T ss_pred             CHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence            57999999997  7899999999999999999997543       23679999999999998875

>PRK05014 hscB co-chaperone HscB; Provisional

Probab=99.27  E-value=9.2e-12  Score=88.17  Aligned_cols=57  Identities=19%  Similarity=0.227  Sum_probs=49.1

Q ss_pred             HHHHHhCCCCC--CChHHHHHHHHHHHHHhCCCCCCC---------HHHHHHHHHHHHHhcchhcccC
Q 048549           45 EAAMILGVRES--TPTEKVKESHRRVMVANHPDAGGS---------HYLASKINEAKAIMLRRTKRSN  101 (104)
Q Consensus        45 ea~~iLgl~~~--~s~~eIk~~yr~l~~~~HPDk~g~---------~~~~~~i~~Aye~L~~~~~r~~  101 (104)
                      ++|++|||++.  ++..+|+++||+|++++|||+..+         .+.+..||+||++|+++.+|+.
T Consensus         2 ~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~   69 (171)
T PRK05014          2 DYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAE   69 (171)
T ss_pred             CHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHH
Confidence            57999999996  688999999999999999999532         2367889999999999988863

>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ

Probab=99.25  E-value=1.1e-11  Score=103.57  Aligned_cols=57  Identities=25%  Similarity=0.464  Sum_probs=52.1

Q ss_pred             HHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCCH---HHHHHHHHHHHHhcchhccc
Q 048549           44 REAAMILGVRESTPTEKVKESHRRVMVANHPDAGGSH---YLASKINEAKAIMLRRTKRS  100 (104)
Q Consensus        44 ~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~~---~~~~~i~~Aye~L~~~~~r~  100 (104)
                      .++|+||||+++++.++|+++||+|++++|||++++.   ..|++|++||++|+++.+|+
T Consensus         2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~~eAeekFqeINEAYEVLSDP~KRa   61 (871)
T TIGR03835         2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPDAASIFAEINEANDVLSNPKKRA   61 (871)
T ss_pred             CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCCHHHHH
Confidence            4789999999999999999999999999999998654   46899999999999998876

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.

>PRK00294 hscB co-chaperone HscB; Provisional

Probab=99.23  E-value=1.6e-11  Score=87.14  Aligned_cols=60  Identities=17%  Similarity=0.190  Sum_probs=51.3

Q ss_pred             CCHHHHHHHhCCCCC--CChHHHHHHHHHHHHHhCCCCCCC---------HHHHHHHHHHHHHhcchhccc
Q 048549           41 MTRREAAMILGVRES--TPTEKVKESHRRVMVANHPDAGGS---------HYLASKINEAKAIMLRRTKRS  100 (104)
Q Consensus        41 m~~~ea~~iLgl~~~--~s~~eIk~~yr~l~~~~HPDk~g~---------~~~~~~i~~Aye~L~~~~~r~  100 (104)
                      |....++++||+++.  .+..+|+++||+|.+++|||+..+         .+.+..||+||++|+++.+|+
T Consensus         1 ~~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra   71 (173)
T PRK00294          1 MGTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRA   71 (173)
T ss_pred             CCCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhH
Confidence            344578999999998  688999999999999999999532         245789999999999998886

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=99.23  E-value=5.8e-11  Score=102.01  Aligned_cols=82  Identities=16%  Similarity=0.240  Sum_probs=66.7

Q ss_pred             HHHHHHHHHHHHHhcCCchhhhhhhcCCCCCCCCHHHHHHHhCCCCC----CChHHHHHHHHHHHHHhCCCCCCC-HHHH
Q 048549            9 AGKYGITAWQAFKAQTPTARMRKVFEGSFQPVMTRREAAMILGVRES----TPTEKVKESHRRVMVANHPDAGGS-HYLA   83 (104)
Q Consensus         9 ~~ra~~~a~~~~~~~~~~~~~~~~~~~~~~~~m~~~ea~~iLgl~~~----~s~~eIk~~yr~l~~~~HPDk~g~-~~~~   83 (104)
                      +.|-.+.+|+.....+             ...|+.++|++||+++-+    ..+++|+++|++|+.+||||||.. -++|
T Consensus      1259 fL~~~L~~W~~ElekK-------------P~~mS~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNPEGRemF 1325 (2235)
T KOG1789|consen 1259 FLRCCLATWYNELEKK-------------PATMSVDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNPEGREMF 1325 (2235)
T ss_pred             HHHHHHHHHHHHHhcC-------------CCccchHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCchHHHHH
Confidence            4567777887766666             567999999999999875    456899999999999999999965 4899


Q ss_pred             HHHHHHHHHhc-chhcccCCC
Q 048549           84 SKINEAKAIML-RRTKRSNSA  103 (104)
Q Consensus        84 ~~i~~Aye~L~-~~~~r~~~~  103 (104)
                      .+||.|||.|+ +..+..++|
T Consensus      1326 e~VnKAYE~L~~~ta~~~~GP 1346 (2235)
T KOG1789|consen 1326 ERVNKAYELLSSETANNSGGP 1346 (2235)
T ss_pred             HHHHHHHHHHHHHHhhcCCCC
Confidence            99999999999 444444444

>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.21  E-value=1.5e-11  Score=90.90  Aligned_cols=57  Identities=18%  Similarity=0.357  Sum_probs=52.1

Q ss_pred             HHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCC------CHHHHHHHHHHHHHhcchhccc
Q 048549           44 REAAMILGVRESTPTEKVKESHRRVMVANHPDAGG------SHYLASKINEAKAIMLRRTKRS  100 (104)
Q Consensus        44 ~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g------~~~~~~~i~~Aye~L~~~~~r~  100 (104)
                      .+.|+||||..+++..+|+++|++|++++|||++.      ..+.|+.|+.||++|.+.++|+
T Consensus        14 ~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~   76 (264)
T KOG0719|consen   14 KDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRA   76 (264)
T ss_pred             cCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            38899999999999999999999999999999973      3478999999999999998875

>PRK03578 hscB co-chaperone HscB; Provisional

Probab=99.20  E-value=3.2e-11  Score=85.80  Aligned_cols=57  Identities=21%  Similarity=0.266  Sum_probs=49.4

Q ss_pred             HHHHHHhCCCCC--CChHHHHHHHHHHHHHhCCCCCCC--H-------HHHHHHHHHHHHhcchhccc
Q 048549           44 REAAMILGVRES--TPTEKVKESHRRVMVANHPDAGGS--H-------YLASKINEAKAIMLRRTKRS  100 (104)
Q Consensus        44 ~ea~~iLgl~~~--~s~~eIk~~yr~l~~~~HPDk~g~--~-------~~~~~i~~Aye~L~~~~~r~  100 (104)
                      .++|++|||++.  ++..+|+++|++|.+++|||+..+  .       +.+..||+||++|+++.+|+
T Consensus         6 ~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra   73 (176)
T PRK03578          6 DDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRA   73 (176)
T ss_pred             CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHH
Confidence            589999999996  689999999999999999999632  1       33578999999999998875

>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.02  E-value=1.8e-10  Score=86.36  Aligned_cols=59  Identities=22%  Similarity=0.332  Sum_probs=53.0

Q ss_pred             HHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhcchhcccC
Q 048549           43 RREAAMILGVRESTPTEKVKESHRRVMVANHPDAGGS---HYLASKINEAKAIMLRRTKRSN  101 (104)
Q Consensus        43 ~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~---~~~~~~i~~Aye~L~~~~~r~~  101 (104)
                      .++.|++|||+.+++..||.++||.|++++|||++.+   ..+|..|..||++|.+...|++
T Consensus        32 ~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~e~k~~F~~iAtayeilkd~e~rt~   93 (329)
T KOG0722|consen   32 AENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDPESKKLFVKIATAYEILKDNETRTQ   93 (329)
T ss_pred             chhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCchhhhhhhhhhcccccccchhhHHh
Confidence            5789999999999999999999999999999999744   4689999999999999876653

>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.00  E-value=3.3e-10  Score=90.09  Aligned_cols=58  Identities=21%  Similarity=0.213  Sum_probs=53.0

Q ss_pred             HHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhcchhccc
Q 048549           43 RREAAMILGVRESTPTEKVKESHRRVMVANHPDAGGS---HYLASKINEAKAIMLRRTKRS  100 (104)
Q Consensus        43 ~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~---~~~~~~i~~Aye~L~~~~~r~  100 (104)
                      ..++|.+|||+.++|.++||+.||+++...|||||-.   .|.|+.|..|||+|.+..+|.
T Consensus       234 ~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~~~A~Eafk~Lq~Afevig~~~kR~  294 (490)
T KOG0720|consen  234 ILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMIPRAEEAFKKLQVAFEVIGDSVKRK  294 (490)
T ss_pred             CCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCChhHHHHHHHHHHHHHHhcchhhhh
Confidence            3579999999999999999999999999999999854   488999999999999988875

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.99  E-value=5.8e-10  Score=87.16  Aligned_cols=59  Identities=24%  Similarity=0.347  Sum_probs=53.8

Q ss_pred             HHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCCHH-------HHHHHHHHHHHhcchhcccC
Q 048549           43 RREAAMILGVRESTPTEKVKESHRRVMVANHPDAGGSHY-------LASKINEAKAIMLRRTKRSN  101 (104)
Q Consensus        43 ~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~~~-------~~~~i~~Aye~L~~~~~r~~  101 (104)
                      ..++|.||||.+++++.||.++||+|+.++|||..-+.+       .|.-|..|+|+|+++.+|+.
T Consensus       393 kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrq  458 (504)
T KOG0624|consen  393 KRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQ  458 (504)
T ss_pred             cchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhh
Confidence            468999999999999999999999999999999976654       58889999999999999875

>PRK01773 hscB co-chaperone HscB; Provisional

Probab=98.95  E-value=1.3e-09  Score=77.49  Aligned_cols=56  Identities=16%  Similarity=0.160  Sum_probs=49.2

Q ss_pred             HHHHHhCCCCC--CChHHHHHHHHHHHHHhCCCCCC--C-------HHHHHHHHHHHHHhcchhccc
Q 048549           45 EAAMILGVRES--TPTEKVKESHRRVMVANHPDAGG--S-------HYLASKINEAKAIMLRRTKRS  100 (104)
Q Consensus        45 ea~~iLgl~~~--~s~~eIk~~yr~l~~~~HPDk~g--~-------~~~~~~i~~Aye~L~~~~~r~  100 (104)
                      +++++||+++.  .+...++++|+.|.+++|||+..  +       .+....||+||.+|++|.+|+
T Consensus         3 nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA   69 (173)
T PRK01773          3 NPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRA   69 (173)
T ss_pred             ChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHH
Confidence            57899999997  89999999999999999999942  2       245788999999999999886

>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]

Probab=98.83  E-value=8.7e-09  Score=82.42  Aligned_cols=57  Identities=23%  Similarity=0.377  Sum_probs=49.9

Q ss_pred             HHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC---------HHHHHHHHHHHHHhcchhcccC
Q 048549           45 EAAMILGVRESTPTEKVKESHRRVMVANHPDAGGS---------HYLASKINEAKAIMLRRTKRSN  101 (104)
Q Consensus        45 ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~---------~~~~~~i~~Aye~L~~~~~r~~  101 (104)
                      ++|+||||+.+.|.++||++||+|..++||||-..         .+...+|+.||+.|.+...|.+
T Consensus        99 DPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~ren  164 (610)
T COG5407          99 DPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRREN  164 (610)
T ss_pred             ChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence            34999999999999999999999999999999543         2567889999999999877754

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.81  E-value=4.8e-09  Score=83.09  Aligned_cols=59  Identities=27%  Similarity=0.485  Sum_probs=53.0

Q ss_pred             HHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCC-CCH----HHHHHHHHHHHHhcchhcccC
Q 048549           43 RREAAMILGVRESTPTEKVKESHRRVMVANHPDAG-GSH----YLASKINEAKAIMLRRTKRSN  101 (104)
Q Consensus        43 ~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~-g~~----~~~~~i~~Aye~L~~~~~r~~  101 (104)
                      ..++|.|||+..+++.+||+++||++++.+|||++ |+.    -+|++|-+||.+|.++.+|+.
T Consensus       372 Rkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r  435 (486)
T KOG0550|consen  372 RKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVR  435 (486)
T ss_pred             hhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhh
Confidence            36899999999999999999999999999999997 441    369999999999999988864

>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB

Probab=98.79  E-value=1e-08  Score=71.72  Aligned_cols=45  Identities=18%  Similarity=0.151  Sum_probs=38.7

Q ss_pred             CChHHHHHHHHHHHHHhCCCCCC--C-------HHHHHHHHHHHHHhcchhccc
Q 048549           56 TPTEKVKESHRRVMVANHPDAGG--S-------HYLASKINEAKAIMLRRTKRS  100 (104)
Q Consensus        56 ~s~~eIk~~yr~l~~~~HPDk~g--~-------~~~~~~i~~Aye~L~~~~~r~  100 (104)
                      .+..+|+++|++|++++|||+..  +       .+.+..||+||++|+++.+|+
T Consensus         3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra   56 (157)
T TIGR00714         3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRA   56 (157)
T ss_pred             CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhH
Confidence            47799999999999999999842  1       256889999999999998886

This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.

>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.79  E-value=5.2e-09  Score=76.38  Aligned_cols=58  Identities=28%  Similarity=0.387  Sum_probs=50.7

Q ss_pred             HHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCCH-----HHHHHHHHHHHHhcchhcccC
Q 048549           44 REAAMILGVRESTPTEKVKESHRRVMVANHPDAGGSH-----YLASKINEAKAIMLRRTKRSN  101 (104)
Q Consensus        44 ~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~~-----~~~~~i~~Aye~L~~~~~r~~  101 (104)
                      .++|.||+|..+++.++|+++|+++++++|||++.+.     ..|.++.+||++|+++.+|..
T Consensus         3 ~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~   65 (306)
T KOG0714|consen    3 KDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKI   65 (306)
T ss_pred             ccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhh
Confidence            5789999999999989999999999999999996444     347889999999999988763

>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.70  E-value=1.8e-08  Score=73.44  Aligned_cols=55  Identities=15%  Similarity=0.222  Sum_probs=48.6

Q ss_pred             HHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCCH-----HHHHHHHHHHHHhcchhc
Q 048549           44 REAAMILGVRESTPTEKVKESHRRVMVANHPDAGGSH-----YLASKINEAKAIMLRRTK   98 (104)
Q Consensus        44 ~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~~-----~~~~~i~~Aye~L~~~~~   98 (104)
                      -.+|++|.|+|.++.++|+++||+|....|||+|.+.     -.|--|..||..|.++..
T Consensus        53 LNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~  112 (250)
T KOG1150|consen   53 LNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKI  112 (250)
T ss_pred             cChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHH
Confidence            3789999999999999999999999999999999765     346678999999988763

>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.58  E-value=1.5e-07  Score=70.15  Aligned_cols=53  Identities=28%  Similarity=0.397  Sum_probs=48.0

Q ss_pred             HHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCC---CCHHHHHHHHHHHH-Hhcc
Q 048549           43 RREAAMILGVRESTPTEKVKESHRRVMVANHPDAG---GSHYLASKINEAKA-IMLR   95 (104)
Q Consensus        43 ~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~---g~~~~~~~i~~Aye-~L~~   95 (104)
                      ..|.+.||||+++++.++++.+|.+|++++|||.|   .|.+.|.+|.+||. +|..
T Consensus        46 ~~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~~adaa~f~qideafrkvlq~  102 (342)
T KOG0568|consen   46 IMECFRILGVEEGADADEVREAFHDLAKQVHPDSGSEEADAARFIQIDEAFRKVLQE  102 (342)
T ss_pred             HHHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCccccHHHHHHHHHHHHHHHHH
Confidence            47999999999999999999999999999999997   46789999999999 5543

>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]

Probab=97.92  E-value=2e-05  Score=60.05  Aligned_cols=58  Identities=19%  Similarity=0.339  Sum_probs=51.0

Q ss_pred             HHHHHHhCCCCC---CChHHHHHHHHHHHHHhCCCCC------CCHHHHHHHHHHHHHhcchhcccC
Q 048549           44 REAAMILGVRES---TPTEKVKESHRRVMVANHPDAG------GSHYLASKINEAKAIMLRRTKRSN  101 (104)
Q Consensus        44 ~ea~~iLgl~~~---~s~~eIk~~yr~l~~~~HPDk~------g~~~~~~~i~~Aye~L~~~~~r~~  101 (104)
                      .+.|.+|||+.-   +++..|.+++++.+.+||||+.      |..+.|.-|..||++|.++.+|..
T Consensus        43 ~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~q  109 (379)
T COG5269          43 VDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQ  109 (379)
T ss_pred             hhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhh
Confidence            688999999874   7889999999999999999983      456889999999999999988764

>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

Probab=97.38  E-value=0.00023  Score=50.34  Aligned_cols=50  Identities=26%  Similarity=0.419  Sum_probs=42.0

Q ss_pred             HHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCC---CCCH--------HHHHHHHHHHHHh
Q 048549           44 REAAMILGVRESTPTEKVKESHRRVMVANHPDA---GGSH--------YLASKINEAKAIM   93 (104)
Q Consensus        44 ~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk---~g~~--------~~~~~i~~Aye~L   93 (104)
                      .+++.+||++...+..+|+++|+.++..+|||+   -|.+        +.++++++||+.+
T Consensus       113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~  173 (174)
T COG1076         113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI  173 (174)
T ss_pred             hhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence            789999999999999999999999999999998   2433        4566677777754

>PF13446 RPT: A repeated domain in UCH-protein

Probab=97.22  E-value=0.002  Score=38.06  Aligned_cols=49  Identities=20%  Similarity=0.238  Sum_probs=39.0

Q ss_pred             CCCHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcc
Q 048549           40 VMTRREAAMILGVRESTPTEKVKESHRRVMVANHPDAGGSHYLASKINEAKAIMLR   95 (104)
Q Consensus        40 ~m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~~~~~~~i~~Aye~L~~   95 (104)
                      .|+.++||++||++++.+.+.|...|+....       .++.....+.+|-.+|-+
T Consensus         1 ~~~~~~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~-------~~P~~~~~~r~AL~~Ia~   49 (62)
T PF13446_consen    1 YMDVEEAYEILGIDEDTDDDFIISAFQSKVN-------DDPSQKDTLREALRVIAE   49 (62)
T ss_pred             CCCHHHHHHHhCcCCCCCHHHHHHHHHHHHH-------cChHhHHHHHHHHHHHHH
Confidence            3899999999999999999999999999888       334455556666666654

>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=97.08  E-value=0.0013  Score=46.36  Aligned_cols=60  Identities=22%  Similarity=0.267  Sum_probs=49.1

Q ss_pred             CHHHHHHHhCCCCC--CChHHHHHHHHHHHHHhCCCCCC-------C--HHHHHHHHHHHHHhcchhcccC
Q 048549           42 TRREAAMILGVRES--TPTEKVKESHRRVMVANHPDAGG-------S--HYLASKINEAKAIMLRRTKRSN  101 (104)
Q Consensus        42 ~~~ea~~iLgl~~~--~s~~eIk~~yr~l~~~~HPDk~g-------~--~~~~~~i~~Aye~L~~~~~r~~  101 (104)
                      +..+.+.+||....  .+++.+...|-...++.|||+-+       +  .+...+||+||..|.++..|+.
T Consensus         6 ~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~   76 (168)
T KOG3192|consen    6 SPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARAR   76 (168)
T ss_pred             hHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHH
Confidence            34688999988775  68888888999999999999832       2  2567889999999999988863

>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]

Probab=96.49  E-value=0.0034  Score=50.66  Aligned_cols=23  Identities=26%  Similarity=0.524  Sum_probs=21.2

Q ss_pred             CCCChHHHHHHHHHHHHHhCCCC
Q 048549           54 ESTPTEKVKESHRRVMVANHPDA   76 (104)
Q Consensus        54 ~~~s~~eIk~~yr~l~~~~HPDk   76 (104)
                      +-++...||++|||-.+..||||
T Consensus       398 DLVtp~~VKKaYrKA~L~VHPDK  420 (453)
T KOG0431|consen  398 DLVTPAQVKKAYRKAVLCVHPDK  420 (453)
T ss_pred             hccCHHHHHHHHHhhhheeCccc
Confidence            33799999999999999999999

>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised

Probab=95.55  E-value=0.023  Score=41.10  Aligned_cols=42  Identities=17%  Similarity=0.255  Sum_probs=36.3

Q ss_pred             CCCCChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcchhc
Q 048549           53 RESTPTEKVKESHRRVMVANHPDAGGSHYLASKINEAKAIMLRRTK   98 (104)
Q Consensus        53 ~~~~s~~eIk~~yr~l~~~~HPDk~g~~~~~~~i~~Aye~L~~~~~   98 (104)
                      ++++|.|||+++++++..+|    +||.....+|..|||.|+-.+-
T Consensus         1 S~~ASfeEIq~Arn~ll~~y----~gd~~~~~~IEaAYD~ILM~rL   42 (194)
T PF11833_consen    1 SEDASFEEIQAARNRLLAQY----AGDEKSREAIEAAYDAILMERL   42 (194)
T ss_pred             CCCCCHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHHHHHH
Confidence            46899999999999999999    5888888999999998875543

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.

>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

Probab=94.46  E-value=0.032  Score=39.38  Aligned_cols=44  Identities=23%  Similarity=0.242  Sum_probs=35.9

Q ss_pred             ChHHHHHHHHHHHHHhCCCCCCCH---------HHHHHHHHHHHHhcchhccc
Q 048549           57 PTEKVKESHRRVMVANHPDAGGSH---------YLASKINEAKAIMLRRTKRS  100 (104)
Q Consensus        57 s~~eIk~~yr~l~~~~HPDk~g~~---------~~~~~i~~Aye~L~~~~~r~  100 (104)
                      ..+.+...|+.+.+.+|||+.++.         +.+..+|.||..|+++..|+
T Consensus        16 ~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra   68 (174)
T COG1076          16 DLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRA   68 (174)
T ss_pred             HHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence            557788999999999999996532         35677999999999987764

>PF14687 DUF4460: Domain of unknown function (DUF4460)

Probab=87.70  E-value=0.8  Score=30.37  Aligned_cols=42  Identities=21%  Similarity=0.276  Sum_probs=28.7

Q ss_pred             CCChHHHHHHHHHHHHHhCCCCCCCH--------HHHHHHHHHHHHhcch
Q 048549           55 STPTEKVKESHRRVMVANHPDAGGSH--------YLASKINEAKAIMLRR   96 (104)
Q Consensus        55 ~~s~~eIk~~yr~l~~~~HPDk~g~~--------~~~~~i~~Aye~L~~~   96 (104)
                      ..+..+++.+-|.+.++.|||.-++.        +-++.|+.=-+.|...
T Consensus         5 ~~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~~~   54 (112)
T PF14687_consen    5 NLSSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLKKR   54 (112)
T ss_pred             hhhhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHhcc
Confidence            35678999999999999999975433        2344455545555443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	104
2guz_A	71	Structure Of The Tim14-tim16 Complex Of The Mitocho		2e-14

>pdb|2GUZ|A Chain A, Structure Of The Tim14-tim16 Complex Of The Mitochondrial Protein Import Motor Length = 71

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 34/65 (52%), Positives = 47/65 (72%), Gaps = 1/65 (1%)
Query: 33 FEGSFQPVMTRREAAMILGVRESTPTEK-VKESHRRVMVANHPDAGGSHYLASKINEAKA 91
           +G F P M  +EA  IL + E+T T+K +KE HR++M+ANHPD GGS +LA+KINEAK 
Sbjct: 3  LKGGFDPKMNSKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGGSPFLATKINEAKD 62
Query: 92 IMLRR 96
           + +R
Sbjct: 63 FLEKR 67

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	104
2guz_A	71	Mitochondrial import inner membrane translocase su	6e-27
2guz_B	65	Mitochondrial import inner membrane translocase su	1e-19
1faf_A	79	Large T antigen; J domain, HPD motif, anti-paralle	1e-04
2pf4_E	174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	8e-04

>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae} Length = 71

 Score = 93.2 bits (232), Expect = 6e-27
 Identities = 34/68 (50%), Positives = 47/68 (69%), Gaps = 1/68 (1%)

Query: 33 FEGSFQPVMTRREAAMILGVRESTPT-EKVKESHRRVMVANHPDAGGSHYLASKINEAKA 91
           +G F P M  +EA  IL + E+T T +K+KE HR++M+ANHPD GGS +LA+KINEAK 
Sbjct: 3  LKGGFDPKMNSKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGGSPFLATKINEAKD 62

Query: 92 IMLRRTKR 99
           + +R   
Sbjct: 63 FLEKRGIS 70

>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae} Length = 65

 Score = 74.5 bits (183), Expect = 1e-19
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 3/53 (5%)

Query: 41 MTRREAAMILGVRESTPT---EKVKESHRRVMVANHPDAGGSHYLASKINEAK 90
          MT  E+  IL + ES      +K+      +   N  + GGS YL SK+  A 
Sbjct: 1  MTLDESCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKGGSFYLQSKVYRAA 53

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1 Length = 79

 Score = 36.5 bits (84), Expect = 1e-04
 Identities = 13/68 (19%), Positives = 29/68 (42%), Gaps = 5/68 (7%)

Query: 40  VMTRREAAM---ILGV-RESTPTEK-VKESHRRVMVANHPDAGGSHYLASKINEAKAIML 94
           V++R +      +L + R+       +++++++  +  HPD GGSH L  ++N       
Sbjct: 4   VLSRADKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSHALMQELNSLWGTFK 63

Query: 95  RRTKRSNS 102
                   
Sbjct: 64  TEVYNLRM 71

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C Length = 174

 Score = 35.7 bits (82), Expect = 8e-04
 Identities = 12/55 (21%), Positives = 24/55 (43%), Gaps = 2/55 (3%)

Query: 49  ILGV-RESTPTEK-VKESHRRVMVANHPDAGGSHYLASKINEAKAIMLRRTKRSN 101
           +LG+ R +      +++++ +     HPD GG      K+N     M    K ++
Sbjct: 16  LLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKKMNTLYKKMEDGVKYAH 70

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	104
2guz_A	71	Mitochondrial import inner membrane translocase su	99.89
2guz_B	65	Mitochondrial import inner membrane translocase su	99.83
1faf_A	79	Large T antigen; J domain, HPD motif, anti-paralle	99.78
2ys8_A	90	RAB-related GTP-binding protein RABJ; DNAJ domain,	99.74
1iur_A	88	KIAA0730 protein; DNAJ like domain, riken structur	99.73
2yua_A	99	Williams-beuren syndrome chromosome region 18 prot	99.71
2dn9_A	79	DNAJ homolog subfamily A member 3; J-domain, TID1,	99.71
2o37_A	92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	99.7
2och_A	73	Hypothetical protein DNJ-12; HSP40, J-domain, chap	99.69
2ctr_A	88	DNAJ homolog subfamily B member 9; J-domain, chape	99.69
2ej7_A	82	HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati	99.69
2ctp_A	78	DNAJ homolog subfamily B member 12; J-domain, chap	99.69
2ctw_A	109	DNAJ homolog subfamily C member 5; J-domain, chape	99.68
1gh6_A	114	Large T antigen; tumor suppressor, oncoprotein, an	99.67
2dmx_A	92	DNAJ homolog subfamily B member 8; DNAJ J domain,	99.67
1hdj_A	77	Human HSP40, HDJ-1; molecular chaperone; NMR {Homo	99.65
2ctq_A	112	DNAJ homolog subfamily C member 12; J-domain, chap	99.65
2cug_A	88	Mkiaa0962 protein; DNAJ-like domain, structural ge	99.65
1wjz_A	94	1700030A21RIK protein; J-domain, DNAJ like protein	99.65
2l6l_A	155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	99.63
2lgw_A	99	DNAJ homolog subfamily B member 2; J domain, HSJ1A	99.63
2qsa_A	109	DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s	99.61
2pf4_E	174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	99.59
1bq0_A	103	DNAJ, HSP40; chaperone, heat shock, protein foldin	99.58
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	99.52
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	99.51
1fpo_A	171	HSC20, chaperone protein HSCB; molecular chaperone	99.51
3hho_A	174	CO-chaperone protein HSCB homolog; structural geno	99.49
2qwo_B	92	Putative tyrosine-protein phosphatase auxilin; cha	99.48
3bvo_A	207	CO-chaperone protein HSCB, mitochondrial precurso;	99.45
1n4c_A	182	Auxilin; four helix bundle, protein binding; NMR {	99.43
3ag7_A	106	Putative uncharacterized protein F9E10.5; J-domain	99.42
3uo3_A	181	J-type CO-chaperone JAC1, mitochondrial; structura	99.33
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	99.22
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	98.46

>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}

Probab=99.89  E-value=2.3e-23  Score=127.26  Aligned_cols=68  Identities=47%  Similarity=0.785  Sum_probs=64.7

Q ss_pred             hhcCCCCCCCCHHHHHHHhCCCC-CCChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcchhcc
Q 048549           32 VFEGSFQPVMTRREAAMILGVRE-STPTEKVKESHRRVMVANHPDAGGSHYLASKINEAKAIMLRRTKR   99 (104)
Q Consensus        32 ~~~~~~~~~m~~~ea~~iLgl~~-~~s~~eIk~~yr~l~~~~HPDk~g~~~~~~~i~~Aye~L~~~~~r   99 (104)
                      |+.+++...|+.+++|+||||++ ++|.++|+++||+|++++|||++|+++.|++|++||++|+++..|
T Consensus         2 ~~~g~~~~~m~~~~~y~iLgl~~~~a~~~eIk~ayr~l~~~~HPDk~g~~~~f~~i~~Aye~L~~~~~r   70 (71)
T 2guz_A            2 FLKGGFDPKMNSKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGGSPFLATKINEAKDFLEKRGIS   70 (71)
T ss_dssp             CCCSCCCSSCCHHHHHHHTTCCTTTCCHHHHHHHHHHHHHHHCGGGTCCHHHHHHHHHHHHHHHHHCCC
T ss_pred             CcCCCCCCCCCHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHhhhhhc
Confidence            67899999999999999999999 799999999999999999999999999999999999999987655

>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}

Probab=99.83  E-value=4.2e-21  Score=115.86  Aligned_cols=58  Identities=29%  Similarity=0.410  Sum_probs=55.2

Q ss_pred             CCHHHHHHHhCCCCC---CChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcchhc
Q 048549           41 MTRREAAMILGVRES---TPTEKVKESHRRVMVANHPDAGGSHYLASKINEAKAIMLRRTK   98 (104)
Q Consensus        41 m~~~ea~~iLgl~~~---~s~~eIk~~yr~l~~~~HPDk~g~~~~~~~i~~Aye~L~~~~~   98 (104)
                      ||.+||+.||||+++   ++.++|+++||+|+..||||+|||+|++.+|++|+++|....+
T Consensus         1 mt~~EA~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDkGGS~yl~~ki~~Ake~l~~~~~   61 (65)
T 2guz_B            1 MTLDESCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKGGSFYLQSKVYRAAERLKWELA   61 (65)
T ss_dssp             CCHHHHHHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            899999999999999   8999999999999999999999999999999999999987643

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1

Probab=99.78  E-value=1.9e-19  Score=111.92  Aligned_cols=61  Identities=16%  Similarity=0.253  Sum_probs=57.2

Q ss_pred             CCHHHHHHHhCCCCC--CChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcchhcccC
Q 048549           41 MTRREAAMILGVRES--TPTEKVKESHRRVMVANHPDAGGSHYLASKINEAKAIMLRRTKRSN  101 (104)
Q Consensus        41 m~~~ea~~iLgl~~~--~s~~eIk~~yr~l~~~~HPDk~g~~~~~~~i~~Aye~L~~~~~r~~  101 (104)
                      ....++|+||||+++  +|.++|+++||+|++++|||++|+.+.|++|++||++|+++.+|..
T Consensus         8 ~~~~~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~~~~~~f~~i~~AYe~L~~~~~r~~   70 (79)
T 1faf_A            8 ADKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSHALMQELNSLWGTFKTEVYNLR   70 (79)
T ss_dssp             HHHHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hhHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHhhHHHHHH
Confidence            345789999999999  9999999999999999999999999999999999999999888765

>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.74  E-value=3.7e-18  Score=108.26  Aligned_cols=59  Identities=25%  Similarity=0.424  Sum_probs=55.3

Q ss_pred             HHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCC---CCHHHHHHHHHHHHHhcchhcccCC
Q 048549           44 REAAMILGVRESTPTEKVKESHRRVMVANHPDAG---GSHYLASKINEAKAIMLRRTKRSNS  102 (104)
Q Consensus        44 ~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~---g~~~~~~~i~~Aye~L~~~~~r~~~  102 (104)
                      .++|+||||+++++.++|+++||+|++++|||++   +..+.|++|++||++|+++.+|+.+
T Consensus        27 ~~~y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~~   88 (90)
T 2ys8_A           27 KDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTALLKNIKSGPS   88 (90)
T ss_dssp             SSHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHHHHHHHCCSCC
T ss_pred             CCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCcccccCC
Confidence            5789999999999999999999999999999997   5678999999999999999998875

>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1

Probab=99.73  E-value=7e-18  Score=106.97  Aligned_cols=63  Identities=13%  Similarity=0.130  Sum_probs=56.8

Q ss_pred             CCCCCCHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC-----HHHHHHHHHHHHHhcchhcc
Q 048549           37 FQPVMTRREAAMILGVRESTPTEKVKESHRRVMVANHPDAGGS-----HYLASKINEAKAIMLRRTKR   99 (104)
Q Consensus        37 ~~~~m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~-----~~~~~~i~~Aye~L~~~~~r   99 (104)
                      ...+++..++|+||||++++|.++|+++||+|++++|||++++     .+.|++|++||++|++...|
T Consensus         9 ~~~~~~~~~~y~vLgv~~~as~~eIKkaYrkla~~~HPDk~~~~~~~a~~~F~~I~~AYevL~~~~~r   76 (88)
T 1iur_A            9 VPRGSILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAFL   76 (88)
T ss_dssp             CCSSSCHHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             CCCCccHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHHHHhhccc
Confidence            3566889999999999999999999999999999999999865     47899999999999987644

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.71  E-value=1.6e-17  Score=106.80  Aligned_cols=64  Identities=20%  Similarity=0.219  Sum_probs=58.1

Q ss_pred             CCCCCCHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHhcchhccc
Q 048549           37 FQPVMTRREAAMILGVRESTPTEKVKESHRRVMVANHPDAGGS----HYLASKINEAKAIMLRRTKRS  100 (104)
Q Consensus        37 ~~~~m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~----~~~~~~i~~Aye~L~~~~~r~  100 (104)
                      ....|+..++|+||||+++++.++|+++||+|++++|||++++    .+.|++|++||++|+++.+|.
T Consensus        10 ~~~~~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~   77 (99)
T 2yua_A           10 GDCSYSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRR   77 (99)
T ss_dssp             CCCSSCSSHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHHH
T ss_pred             CCCCCCccCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHH
Confidence            4456888999999999999999999999999999999999864    578999999999999998774

>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.71  E-value=1.3e-17  Score=102.91  Aligned_cols=61  Identities=21%  Similarity=0.290  Sum_probs=55.1

Q ss_pred             CCCHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHhcchhccc
Q 048549           40 VMTRREAAMILGVRESTPTEKVKESHRRVMVANHPDAGGS----HYLASKINEAKAIMLRRTKRS  100 (104)
Q Consensus        40 ~m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~----~~~~~~i~~Aye~L~~~~~r~  100 (104)
                      .++..++|+||||+++++.++|+++||+|++++|||++++    .+.|++|++||++|+++.+|.
T Consensus         3 ~~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~   67 (79)
T 2dn9_A            3 SGSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRK   67 (79)
T ss_dssp             SSCCSCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHHSHHHHH
T ss_pred             CCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHH
Confidence            3555689999999999999999999999999999999864    478999999999999998875

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}

Probab=99.70  E-value=2.2e-17  Score=104.89  Aligned_cols=60  Identities=27%  Similarity=0.359  Sum_probs=55.5

Q ss_pred             CCHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCC-CCHHHHHHHHHHHHHhcchhccc
Q 048549           41 MTRREAAMILGVRESTPTEKVKESHRRVMVANHPDAG-GSHYLASKINEAKAIMLRRTKRS  100 (104)
Q Consensus        41 m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~-g~~~~~~~i~~Aye~L~~~~~r~  100 (104)
                      +...++|+||||+++++.++|+++||+|++++|||++ ++.+.|++|++||++|+++.+|.
T Consensus         5 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~   65 (92)
T 2o37_A            5 VKETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDTEKFKEISEAFEILNDPQKRE   65 (92)
T ss_dssp             CSCCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTSTTCCHHHHHHHHHHHHHHTSHHHHH
T ss_pred             ccCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHCCHHHHH
Confidence            3557899999999999999999999999999999997 67899999999999999998774

>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A

Probab=99.69  E-value=2.4e-17  Score=100.46  Aligned_cols=58  Identities=21%  Similarity=0.329  Sum_probs=53.6

Q ss_pred             HHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHHhcchhccc
Q 048549           43 RREAAMILGVRESTPTEKVKESHRRVMVANHPDAGGS-HYLASKINEAKAIMLRRTKRS  100 (104)
Q Consensus        43 ~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~-~~~~~~i~~Aye~L~~~~~r~  100 (104)
                      ..++|+||||+++++.++|+++|++|++++|||++++ .+.|++|++||++|+++.+|.
T Consensus         7 ~~~~y~iLgl~~~a~~~eIk~ayr~l~~~~HPD~~~~~~~~f~~i~~Ay~~L~d~~~R~   65 (73)
T 2och_A            7 ETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDGAEQFKQISQAYEVLSDEKKRQ   65 (73)
T ss_dssp             CCCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCTTCHHHHHHHHHHHHHHTSHHHHH
T ss_pred             CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCcCHHHHHHHHHHHHHHHCCHHHHH
Confidence            4578999999999999999999999999999999754 689999999999999998874

>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.69  E-value=2.3e-17  Score=103.90  Aligned_cols=60  Identities=23%  Similarity=0.305  Sum_probs=54.5

Q ss_pred             CCHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhcchhccc
Q 048549           41 MTRREAAMILGVRESTPTEKVKESHRRVMVANHPDAGGS---HYLASKINEAKAIMLRRTKRS  100 (104)
Q Consensus        41 m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~---~~~~~~i~~Aye~L~~~~~r~  100 (104)
                      ++..++|+||||+++++.++|+++||+|++++|||++++   .+.|.+|++||++|+++.+|.
T Consensus         4 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~~L~d~~~R~   66 (88)
T 2ctr_A            4 GSSGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRK   66 (88)
T ss_dssp             CCCCSHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCCSHHHHHHHHHHHHHHHHHHSSHHHH
T ss_pred             CCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHHHCCHHHHH
Confidence            445689999999999999999999999999999999876   468999999999999998774

>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.69  E-value=2.7e-17  Score=102.08  Aligned_cols=59  Identities=20%  Similarity=0.294  Sum_probs=53.4

Q ss_pred             CHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCCH-----HHHHHHHHHHHHhcchhccc
Q 048549           42 TRREAAMILGVRESTPTEKVKESHRRVMVANHPDAGGSH-----YLASKINEAKAIMLRRTKRS  100 (104)
Q Consensus        42 ~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~~-----~~~~~i~~Aye~L~~~~~r~  100 (104)
                      ...++|+||||+++++.++|+++|++|++++|||++++.     +.|++|++||++|+++.+|.
T Consensus         7 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~   70 (82)
T 2ej7_A            7 GMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRD   70 (82)
T ss_dssp             SSCCHHHHTTCCTTCCHHHHHHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSSTTHHH
T ss_pred             CCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHHCCHHHHH
Confidence            346899999999999999999999999999999998653     58999999999999998874

>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.69  E-value=1.4e-17  Score=102.56  Aligned_cols=61  Identities=26%  Similarity=0.324  Sum_probs=55.1

Q ss_pred             CCCHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhcchhccc
Q 048549           40 VMTRREAAMILGVRESTPTEKVKESHRRVMVANHPDAGGS---HYLASKINEAKAIMLRRTKRS  100 (104)
Q Consensus        40 ~m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~---~~~~~~i~~Aye~L~~~~~r~  100 (104)
                      .++..++|+||||+++++.++|+++|++|++++|||++++   .+.|.+|++||++|+++.+|.
T Consensus         3 ~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~   66 (78)
T 2ctp_A            3 SGSSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRK   66 (78)
T ss_dssp             CSCSCCHHHHHTCCTTCCHHHHHHHHHHHHTTSCTTTCSSHHHHHHHHHHHHHHHHHTSHHHHH
T ss_pred             CCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHH
Confidence            3556789999999999999999999999999999999854   578999999999999998775

>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.68  E-value=4.9e-17  Score=106.29  Aligned_cols=64  Identities=25%  Similarity=0.359  Sum_probs=57.1

Q ss_pred             CCCCCCHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHhcchhccc
Q 048549           37 FQPVMTRREAAMILGVRESTPTEKVKESHRRVMVANHPDAGGS----HYLASKINEAKAIMLRRTKRS  100 (104)
Q Consensus        37 ~~~~m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~----~~~~~~i~~Aye~L~~~~~r~  100 (104)
                      +...++..++|+||||+++++.++|+++||+|++++|||++++    .+.|++|++||++|+++.+|.
T Consensus        10 r~~~~~~~~~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~   77 (109)
T 2ctw_A           10 RSLSTSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRN   77 (109)
T ss_dssp             CCTTSCSCCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTSTTCHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             cccCCCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHcCHHHHH
Confidence            3445666799999999999999999999999999999999865    478999999999999998875

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1

Probab=99.67  E-value=1.3e-17  Score=110.18  Aligned_cols=59  Identities=20%  Similarity=0.206  Sum_probs=56.0

Q ss_pred             HHHHHHHhCCCCCCCh--HHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcchhcccC
Q 048549           43 RREAAMILGVRESTPT--EKVKESHRRVMVANHPDAGGSHYLASKINEAKAIMLRRTKRSN  101 (104)
Q Consensus        43 ~~ea~~iLgl~~~~s~--~eIk~~yr~l~~~~HPDk~g~~~~~~~i~~Aye~L~~~~~r~~  101 (104)
                      ..++|+||||+++++.  ++|+++||+|++++|||++++.+.|++|++||++|+++.+|+.
T Consensus         7 ~~~~Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~~~~e~f~~I~~AYevL~d~~~R~~   67 (114)
T 1gh6_A            7 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKKMNTLYKKMEDGVKYAH   67 (114)
T ss_dssp             HHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCTTTTTHHHHHHHHHHHHHHHSCC
T ss_pred             hhhHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCCccHHHHHHHHHHHHHHCCHHHHHH
Confidence            4689999999999988  9999999999999999999999999999999999999999875

>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.67  E-value=6.9e-17  Score=102.32  Aligned_cols=58  Identities=26%  Similarity=0.353  Sum_probs=52.8

Q ss_pred             HHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC-----HHHHHHHHHHHHHhcchhccc
Q 048549           43 RREAAMILGVRESTPTEKVKESHRRVMVANHPDAGGS-----HYLASKINEAKAIMLRRTKRS  100 (104)
Q Consensus        43 ~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~-----~~~~~~i~~Aye~L~~~~~r~  100 (104)
                      ..++|+||||+++++.++|+++||+|++++|||++++     .+.|++|++||++|.++.+|.
T Consensus         8 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~   70 (92)
T 2dmx_A            8 MANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRS   70 (92)
T ss_dssp             CCCHHHHHTCCTTCCTTHHHHHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred             CcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCccHHHHHHHHHHHHHHHHHHCCHHHHH
Confidence            3579999999999999999999999999999999864     368999999999999998774

>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1

Probab=99.65  E-value=9.2e-17  Score=98.65  Aligned_cols=56  Identities=25%  Similarity=0.349  Sum_probs=51.6

Q ss_pred             HHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCC---CHHHHHHHHHHHHHhcchhccc
Q 048549           45 EAAMILGVRESTPTEKVKESHRRVMVANHPDAGG---SHYLASKINEAKAIMLRRTKRS  100 (104)
Q Consensus        45 ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g---~~~~~~~i~~Aye~L~~~~~r~  100 (104)
                      ++|+||||++++|.++|+++|++|++++|||+++   +.+.|.+|++||++|+++.+|.
T Consensus         4 ~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~R~   62 (77)
T 1hdj_A            4 DYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKRE   62 (77)
T ss_dssp             CSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             CHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHH
Confidence            5799999999999999999999999999999975   3588999999999999998775

>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.65  E-value=1.1e-16  Score=104.98  Aligned_cols=60  Identities=20%  Similarity=0.274  Sum_probs=55.0

Q ss_pred             CCHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHhcchhccc
Q 048549           41 MTRREAAMILGVRESTPTEKVKESHRRVMVANHPDAGGS----HYLASKINEAKAIMLRRTKRS  100 (104)
Q Consensus        41 m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~----~~~~~~i~~Aye~L~~~~~r~  100 (104)
                      +...++|+||||+++++.++|+++||+|++++|||++++    .+.|++|++||++|+++.+|.
T Consensus        17 ~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~   80 (112)
T 2ctq_A           17 EDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRA   80 (112)
T ss_dssp             CCCCCHHHHTTCCTTSCHHHHHHHHHHHHHTTCTTTCTTCSTHHHHHHHHHHHHHHHHSHHHHH
T ss_pred             cCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHH
Confidence            455789999999999999999999999999999999864    689999999999999998875

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}

Probab=99.65  E-value=1.4e-16  Score=100.34  Aligned_cols=58  Identities=21%  Similarity=0.320  Sum_probs=53.3

Q ss_pred             HHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCC---CHHHHHHHHHHHHHhcchhccc
Q 048549           43 RREAAMILGVRESTPTEKVKESHRRVMVANHPDAGG---SHYLASKINEAKAIMLRRTKRS  100 (104)
Q Consensus        43 ~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g---~~~~~~~i~~Aye~L~~~~~r~  100 (104)
                      ..++|+||||+++++.++|+++||+|++++|||+++   ..+.|++|++||++|.++.+|.
T Consensus        16 ~~d~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~   76 (88)
T 2cug_A           16 DFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRT   76 (88)
T ss_dssp             SSCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCSTTHHHHHHHHHHHHHHHHSHHHHH
T ss_pred             CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHHCCHHHHH
Confidence            458999999999999999999999999999999975   4578999999999999998875

>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1

Probab=99.65  E-value=2.6e-17  Score=104.37  Aligned_cols=62  Identities=18%  Similarity=0.254  Sum_probs=55.6

Q ss_pred             CCCCHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCC----------CHHHHHHHHHHHHHhcchhccc
Q 048549           39 PVMTRREAAMILGVRESTPTEKVKESHRRVMVANHPDAGG----------SHYLASKINEAKAIMLRRTKRS  100 (104)
Q Consensus        39 ~~m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g----------~~~~~~~i~~Aye~L~~~~~r~  100 (104)
                      ..|+..++|+||||+++++.++|+++||+|++++|||++.          ..+.|.+|++||++|+++.+|.
T Consensus        11 ~~~~~~~~y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~   82 (94)
T 1wjz_A           11 EQTLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKK   82 (94)
T ss_dssp             SSSSCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHH
T ss_pred             ccCCCCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHH
Confidence            4467789999999999999999999999999999999964          2378999999999999998875

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}

Probab=99.63  E-value=3.1e-16  Score=107.66  Aligned_cols=62  Identities=19%  Similarity=0.305  Sum_probs=55.5

Q ss_pred             CCCCHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCCH----------HHHHHHHHHHHHhcchhccc
Q 048549           39 PVMTRREAAMILGVRESTPTEKVKESHRRVMVANHPDAGGSH----------YLASKINEAKAIMLRRTKRS  100 (104)
Q Consensus        39 ~~m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~~----------~~~~~i~~Aye~L~~~~~r~  100 (104)
                      ..|+..++|+||||+++++.++|+++||+|++++|||++++.          +.|.+|++||++|+++.+|+
T Consensus         5 ~~~~~~~~y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~   76 (155)
T 2l6l_A            5 EQMPKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKR   76 (155)
T ss_dssp             CCCCCSHHHHHHTCCTTCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHC
T ss_pred             ccCCCCChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            345667999999999999999999999999999999997432          78999999999999998885

>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}

Probab=99.63  E-value=4.2e-16  Score=100.45  Aligned_cols=56  Identities=25%  Similarity=0.337  Sum_probs=51.5

Q ss_pred             HHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC-----HHHHHHHHHHHHHhcchhccc
Q 048549           45 EAAMILGVRESTPTEKVKESHRRVMVANHPDAGGS-----HYLASKINEAKAIMLRRTKRS  100 (104)
Q Consensus        45 ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~-----~~~~~~i~~Aye~L~~~~~r~  100 (104)
                      ++|+||||++++|.++|+++||+|++++|||++++     .+.|++|++||++|+++.+|.
T Consensus         3 d~Y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY~vL~d~~~R~   63 (99)
T 2lgw_A            3 SYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKRE   63 (99)
T ss_dssp             CHHHHSSSCTTSCHHHHHHHHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred             CHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCccHHHHHHHHHHHHHHHHHHCCHHHHH
Confidence            57999999999999999999999999999999864     368999999999999998774

>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}

Probab=99.61  E-value=4.2e-16  Score=101.53  Aligned_cols=58  Identities=16%  Similarity=0.159  Sum_probs=53.6

Q ss_pred             HHHHHHHhCCCCCC-ChHHHHHHHHHHHHHhCCCCCCC-------HHHHHHHHHHHHHhcchhccc
Q 048549           43 RREAAMILGVREST-PTEKVKESHRRVMVANHPDAGGS-------HYLASKINEAKAIMLRRTKRS  100 (104)
Q Consensus        43 ~~ea~~iLgl~~~~-s~~eIk~~yr~l~~~~HPDk~g~-------~~~~~~i~~Aye~L~~~~~r~  100 (104)
                      ..++|+||||++++ |.++|+++||+|++++|||++++       .+.|.+|++||++|+++.+|.
T Consensus        14 ~~~~y~iLgv~~~a~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~~~R~   79 (109)
T 2qsa_A           14 LENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKT   79 (109)
T ss_dssp             TSCHHHHTTCCGGGCCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred             CCCHHHHcCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCHHHHH
Confidence            46889999999999 99999999999999999999876       478999999999999998874

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C

Probab=99.59  E-value=1.8e-16  Score=111.55  Aligned_cols=59  Identities=20%  Similarity=0.209  Sum_probs=52.3

Q ss_pred             HHHHHHHhCCCCCCC--hHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcchhcccC
Q 048549           43 RREAAMILGVRESTP--TEKVKESHRRVMVANHPDAGGSHYLASKINEAKAIMLRRTKRSN  101 (104)
Q Consensus        43 ~~ea~~iLgl~~~~s--~~eIk~~yr~l~~~~HPDk~g~~~~~~~i~~Aye~L~~~~~r~~  101 (104)
                      ..++|+||||+++++  .++|+++||++++++|||++++.+.|++|++||++|+++.+|+.
T Consensus        10 ~~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~~e~F~~I~~AYevLsdp~kR~~   70 (174)
T 2pf4_E           10 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKKMNTLYKKMEDGVKYAH   70 (174)
T ss_dssp             HHHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---CCTTTTHHHHHHHHHHHHHHHHT
T ss_pred             cccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence            468999999999987  69999999999999999999999999999999999999988864

>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A

Probab=99.58  E-value=1.8e-16  Score=102.37  Aligned_cols=56  Identities=23%  Similarity=0.400  Sum_probs=51.4

Q ss_pred             HHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHhcchhccc
Q 048549           45 EAAMILGVRESTPTEKVKESHRRVMVANHPDAGGS----HYLASKINEAKAIMLRRTKRS  100 (104)
Q Consensus        45 ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~----~~~~~~i~~Aye~L~~~~~r~  100 (104)
                      ++|+||||++++|.++|+++||+|++++|||++++    .+.|++|++||++|+++.+|.
T Consensus         4 ~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~   63 (103)
T 1bq0_A            4 DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRA   63 (103)
T ss_dssp             CSTTTTSSCSSCCHHHHHHHHHHHHTTTCTTTCTTTCTHHHHHHHHTTTTTSTTCSHHHH
T ss_pred             CHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHH
Confidence            57999999999999999999999999999999764    478999999999999998774

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=99.52  E-value=7.8e-15  Score=103.17  Aligned_cols=57  Identities=21%  Similarity=0.369  Sum_probs=51.9

Q ss_pred             HHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHhcchhccc
Q 048549           44 REAAMILGVRESTPTEKVKESHRRVMVANHPDAGGS----HYLASKINEAKAIMLRRTKRS  100 (104)
Q Consensus        44 ~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~----~~~~~~i~~Aye~L~~~~~r~  100 (104)
                      .++|+||||++++|.++|+++||+|++++|||++++    .+.|.+|++||++|+++.+|+
T Consensus         2 ~~~y~~l~~~~~a~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~~L~~~~~r~   62 (210)
T 3apq_A            2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRK   62 (210)
T ss_dssp             CCHHHHHTCCTTCCHHHHHHHHHHHHHHHCGGGCTTCTTHHHHHHHHHHHHHHHTSHHHHH
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhCCHHHHH
Confidence            368999999999999999999999999999999742    478999999999999998875

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A

Probab=99.51  E-value=1.2e-15  Score=116.23  Aligned_cols=64  Identities=22%  Similarity=0.334  Sum_probs=0.0

Q ss_pred             CCCCCHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhcchhcccC
Q 048549           38 QPVMTRREAAMILGVRESTPTEKVKESHRRVMVANHPDAGGS---HYLASKINEAKAIMLRRTKRSN  101 (104)
Q Consensus        38 ~~~m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~---~~~~~~i~~Aye~L~~~~~r~~  101 (104)
                      +..|+..++|+||||++++|.++|+++||+|++++|||++.+   .+.|++|++||++|+++.+|+.
T Consensus        22 ~~~m~~~d~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vL~d~~~R~~   88 (329)
T 3lz8_A           22 SNAMELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAE   88 (329)
T ss_dssp             -------------------------------------------------------------------
T ss_pred             cccccccCHHHHcCcCCCCCHHHHHHHHHHHHHHHCCCCCCChHHHHHHHHHHHHHHHhhhhhhhcc
Confidence            455888999999999999999999999999999999999754   5789999999999999988863

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1

Probab=99.51  E-value=1.2e-14  Score=101.76  Aligned_cols=56  Identities=18%  Similarity=0.208  Sum_probs=50.6

Q ss_pred             HHHHHhCCCCCC--ChHHHHHHHHHHHHHhCCCCCCC--H-------HHHHHHHHHHHHhcchhccc
Q 048549           45 EAAMILGVREST--PTEKVKESHRRVMVANHPDAGGS--H-------YLASKINEAKAIMLRRTKRS  100 (104)
Q Consensus        45 ea~~iLgl~~~~--s~~eIk~~yr~l~~~~HPDk~g~--~-------~~~~~i~~Aye~L~~~~~r~  100 (104)
                      ++|+||||++++  |..+|+++||+|++++|||++++  .       +.|..|++||++|+++.+|+
T Consensus         2 d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~   68 (171)
T 1fpo_A            2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRA   68 (171)
T ss_dssp             HHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred             CHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHH
Confidence            689999999998  99999999999999999999643  1       47999999999999998884

>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A

Probab=99.48  E-value=4.7e-15  Score=94.72  Aligned_cols=51  Identities=18%  Similarity=0.242  Sum_probs=45.6

Q ss_pred             HHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC-------HHHHHHHHHHHHHhcc
Q 048549           45 EAAMILGVRESTPTEKVKESHRRVMVANHPDAGGS-------HYLASKINEAKAIMLR   95 (104)
Q Consensus        45 ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~-------~~~~~~i~~Aye~L~~   95 (104)
                      ..|++|||++.+|.++|+++||++++++|||++.+       .+.|.+|++||++|.+
T Consensus        34 ~~y~~Lgv~~~as~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL~~   91 (92)
T 2qwo_B           34 TKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN   91 (92)
T ss_dssp             CSCCCCCGGGSSSHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCeecCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHHHh
Confidence            34899999999999999999999999999999643       3579999999999975

>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}

Probab=99.45  E-value=5.8e-14  Score=100.97  Aligned_cols=58  Identities=19%  Similarity=0.237  Sum_probs=51.1

Q ss_pred             HHHHHHHhCCCCC--CChHHHHHHHHHHHHHhCCCCCCC---------HHHHHHHHHHHHHhcchhccc
Q 048549           43 RREAAMILGVRES--TPTEKVKESHRRVMVANHPDAGGS---------HYLASKINEAKAIMLRRTKRS  100 (104)
Q Consensus        43 ~~ea~~iLgl~~~--~s~~eIk~~yr~l~~~~HPDk~g~---------~~~~~~i~~Aye~L~~~~~r~  100 (104)
                      ..++|+||||+++  ++.++|+++||+|++++|||++++         .+.|.+||+||++|+++.+|+
T Consensus        42 ~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp~~R~  110 (207)
T 3bvo_A           42 TRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRG  110 (207)
T ss_dssp             TCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred             CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHH
Confidence            4579999999986  799999999999999999999653         146899999999999998885

>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J

Probab=99.43  E-value=1.1e-14  Score=103.13  Aligned_cols=57  Identities=18%  Similarity=0.295  Sum_probs=51.7

Q ss_pred             HHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC-------HHHHHHHHHHHHHhcchhccc
Q 048549           44 REAAMILGVRESTPTEKVKESHRRVMVANHPDAGGS-------HYLASKINEAKAIMLRRTKRS  100 (104)
Q Consensus        44 ~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~-------~~~~~~i~~Aye~L~~~~~r~  100 (104)
                      .++|++|||+++++.++|+++||+|++++|||++.+       .+.|.+|++||++|+++.+|+
T Consensus       117 ~d~Y~vLgv~~~As~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYevLsD~~kR~  180 (182)
T 1n4c_A          117 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKP  180 (182)
T ss_dssp             CCCCCCCCGGGGSSHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             cchhhcCCCCCCCCHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHHHHCCHHhhh
Confidence            478999999999999999999999999999999632       358999999999999998886

>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}

Probab=99.42  E-value=8.5e-15  Score=95.55  Aligned_cols=53  Identities=17%  Similarity=0.066  Sum_probs=46.9

Q ss_pred             HHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCC----C-------HHHHHHHHHHHHHhcchh
Q 048549           44 REAAMILGVRESTPTEKVKESHRRVMVANHPDAGG----S-------HYLASKINEAKAIMLRRT   97 (104)
Q Consensus        44 ~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g----~-------~~~~~~i~~Aye~L~~~~   97 (104)
                      .++|+|||++. +|.++||++||++++++||||+.    +       .+.|++|++||++|+++.
T Consensus        41 ~d~Y~vl~~~~-As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~~  104 (106)
T 3ag7_A           41 SGWKPVPLMDM-IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTLG  104 (106)
T ss_dssp             SCCCCCCGGGS-CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             CCHHHHcCCCC-CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCcc
Confidence            47899999986 99999999999999999999952    3       468999999999999864

>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A

Probab=99.33  E-value=1.5e-13  Score=96.94  Aligned_cols=58  Identities=16%  Similarity=0.239  Sum_probs=51.5

Q ss_pred             HHHHHHHh------CCCC-CCChHHHHHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHHhcchhccc
Q 048549           43 RREAAMIL------GVRE-STPTEKVKESHRRVMVANHPDAGG-SHYLASKINEAKAIMLRRTKRS  100 (104)
Q Consensus        43 ~~ea~~iL------gl~~-~~s~~eIk~~yr~l~~~~HPDk~g-~~~~~~~i~~Aye~L~~~~~r~  100 (104)
                      ..++|+||      |+++ ++|.++|+++||+|++++|||+++ +.+.|.+|++||++|+++.+|+
T Consensus        10 ~~d~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~a~~~f~~i~~AY~vL~dp~~R~   75 (181)
T 3uo3_A           10 TSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQGSEQSSTLNQAYHTLKDPLRRS   75 (181)
T ss_dssp             SCCTGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCSCSSGGGSHHHHHHHHHSHHHHH
T ss_pred             CCCHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCccHHHHHHHHHHHHHHHcChHHHH
Confidence            35789999      4655 799999999999999999999986 6788999999999999998875

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=99.22  E-value=1e-12  Score=107.32  Aligned_cols=60  Identities=20%  Similarity=0.338  Sum_probs=34.8

Q ss_pred             CCHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHhcchhccc
Q 048549           41 MTRREAAMILGVRESTPTEKVKESHRRVMVANHPDAGGS----HYLASKINEAKAIMLRRTKRS  100 (104)
Q Consensus        41 m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~----~~~~~~i~~Aye~L~~~~~r~  100 (104)
                      ....++|+||||++++|.++|+++||+|++++|||++++    .+.|++|++||++|+++.+|+
T Consensus        18 ~~~~~~y~~lg~~~~a~~~~i~~ay~~l~~~~hpd~~~~~~~~~~~f~~i~~ay~~L~~~~~r~   81 (780)
T 3apo_A           18 RHDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRK   81 (780)
T ss_dssp             -----CHHHHTCCTTCCHHHHHHHHCC-----------------------CTHHHHHHSHHHHH
T ss_pred             CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHHcChHHHH
Confidence            345789999999999999999999999999999999743    468999999999999998875

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=98.46  E-value=1.7e-07  Score=69.27  Aligned_cols=56  Identities=21%  Similarity=0.296  Sum_probs=49.9

Q ss_pred             HHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCCHH-------HHHHHHHHHHHhcchhccc
Q 048549           45 EAAMILGVRESTPTEKVKESHRRVMVANHPDAGGSHY-------LASKINEAKAIMLRRTKRS  100 (104)
Q Consensus        45 ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~~~-------~~~~i~~Aye~L~~~~~r~  100 (104)
                      +.+.+||+....+.+++++.|+++++++|||+..+.+       .|.+|++||++|.++.+|.
T Consensus       383 ~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~  445 (450)
T 2y4t_A          383 DYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRK  445 (450)
T ss_dssp             CSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-
T ss_pred             hHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence            4578899999999999999999999999999987654       7999999999999999886

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	104
d1fafa_	79	Large T antigen, the N-terminal J domain {Murine p	99.78
d1gh6a_	114	Large T antigen, the N-terminal J domain {Simian v	99.75
d1xbla_	75	DnaJ chaperone, N-terminal (J) domain {Escherichia	99.67
d1hdja_	77	HSP40 {Human (Homo sapiens) [TaxId: 9606]}	99.6
d1wjza_	94	CSL-type zinc finger-containing protein 3 (J-domai	99.59
d1iura_	88	Hypothetical protein KIAA0730 {Human (Homo sapiens	99.58
d1fpoa1	76	HSC20 (HSCB), N-terminal (J) domain {Escherichia c	99.5
d1nz6a_	98	Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}	99.43

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Murine polyomavirus [TaxId: 10634]

Probab=99.78  E-value=1.4e-19  Score=111.44  Aligned_cols=59  Identities=17%  Similarity=0.264  Sum_probs=55.2

Q ss_pred             HHHHHHHhCCCCCC--ChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcchhcccC
Q 048549           43 RREAAMILGVREST--PTEKVKESHRRVMVANHPDAGGSHYLASKINEAKAIMLRRTKRSN  101 (104)
Q Consensus        43 ~~ea~~iLgl~~~~--s~~eIk~~yr~l~~~~HPDk~g~~~~~~~i~~Aye~L~~~~~r~~  101 (104)
                      ..++|+||||++++  +.++|+++||++++++|||+||+.+.|++||+||++|.++.+|..
T Consensus        10 ~~~~y~iLgl~~~~~~~~~~IkkaYr~l~~~~HPDk~g~~e~~~~in~Ay~~L~d~~~r~~   70 (79)
T d1fafa_          10 KERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSHALMQELNSLWGTFKTEVYNLR   70 (79)
T ss_dssp             HHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHhCcccCCCHHHHHHHHHHHHHHCCHHHHHH
Confidence            47899999999986  999999999999999999999999999999999999999987754

>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Simian virus 40, Sv40 [TaxId: 10633]

Probab=99.75  E-value=1.6e-19  Score=117.51  Aligned_cols=59  Identities=20%  Similarity=0.232  Sum_probs=54.9

Q ss_pred             HHHHHHHhCCCCCC--ChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcchhcccC
Q 048549           43 RREAAMILGVREST--PTEKVKESHRRVMVANHPDAGGSHYLASKINEAKAIMLRRTKRSN  101 (104)
Q Consensus        43 ~~ea~~iLgl~~~~--s~~eIk~~yr~l~~~~HPDk~g~~~~~~~i~~Aye~L~~~~~r~~  101 (104)
                      ..+.|+||||+.++  +.++||++||+|++++|||+||+.+.|++|++||++|+++.+|+.
T Consensus         7 ~~~ly~iLGv~~~a~~~~~~IKkAYrkla~k~HPDk~~~~e~F~~I~~AY~vLsd~~kR~~   67 (114)
T d1gh6a_           7 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKKMNTLYKKMEDGVKYAH   67 (114)
T ss_dssp             HHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCTTTTTHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHhCCHHHHHH
Confidence            36899999999997  788999999999999999999999999999999999999988763

>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.67  E-value=1.4e-17  Score=101.15  Aligned_cols=57  Identities=23%  Similarity=0.402  Sum_probs=51.3

Q ss_pred             HHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHhcchhccc
Q 048549           44 REAAMILGVRESTPTEKVKESHRRVMVANHPDAGGS----HYLASKINEAKAIMLRRTKRS  100 (104)
Q Consensus        44 ~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~----~~~~~~i~~Aye~L~~~~~r~  100 (104)
                      +++|+||||++++|.++|+++||+|++++|||++.+    .+.|.+|++||++|+++.+|.
T Consensus         3 ~dyY~vLgv~~~As~~eIk~aYr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~vL~d~~~R~   63 (75)
T d1xbla_           3 QDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRA   63 (75)
T ss_dssp             CCTTTTTCCSSSCCHHHHHHHHHHHHHHTCCTTCTTTCHHHHHHHHHHHHHHHTTSSHHHH
T ss_pred             CCHHHHcCCCCCcCHHHHHHHHHHHHhhhhhhccCCChHHHHHHHHHHHHHHhcCCHHHHH
Confidence            367999999999999999999999999999999753    256999999999999998774

>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSP40
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=4.5e-16  Score=94.63  Aligned_cols=56  Identities=25%  Similarity=0.344  Sum_probs=51.4

Q ss_pred             HHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhcchhccc
Q 048549           45 EAAMILGVRESTPTEKVKESHRRVMVANHPDAGGS---HYLASKINEAKAIMLRRTKRS  100 (104)
Q Consensus        45 ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~---~~~~~~i~~Aye~L~~~~~r~  100 (104)
                      ++|+||||++++|.++|+++|+++++++|||++.+   .+.|..|++||++|.++.+|.
T Consensus         4 dyY~iLgv~~~as~~eIk~ay~~l~~~~hPD~~~~~~~~~~~~~i~~Ay~vLsdp~~R~   62 (77)
T d1hdja_           4 DYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKRE   62 (77)
T ss_dssp             CSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             ChHHHcCCCCCcCHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHhcCHHHHH
Confidence            57999999999999999999999999999999754   377999999999999998875

>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.59  E-value=2.1e-16  Score=99.59  Aligned_cols=57  Identities=19%  Similarity=0.289  Sum_probs=51.0

Q ss_pred             HHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC----------HHHHHHHHHHHHHhcchhccc
Q 048549           44 REAAMILGVRESTPTEKVKESHRRVMVANHPDAGGS----------HYLASKINEAKAIMLRRTKRS  100 (104)
Q Consensus        44 ~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~----------~~~~~~i~~Aye~L~~~~~r~  100 (104)
                      .++|+||||++++|.++|+++|++|++.+|||++..          .+.|..|++||++|.++.+|.
T Consensus        16 ~d~Y~iLgv~~~as~~eIk~aY~~l~~~~HPDk~~~~~~~~~~~~a~~~f~~I~~Ay~vL~d~~~R~   82 (94)
T d1wjza_          16 KDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKK   82 (94)
T ss_dssp             SCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHH
T ss_pred             cChHHHcCCCCCcCHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence            589999999999999999999999999999999632          156899999999999988774

>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Hypothetical protein KIAA0730
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=8e-16  Score=96.04  Aligned_cols=58  Identities=14%  Similarity=0.174  Sum_probs=51.0

Q ss_pred             CHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC-----HHHHHHHHHHHHHhcchhcc
Q 048549           42 TRREAAMILGVRESTPTEKVKESHRRVMVANHPDAGGS-----HYLASKINEAKAIMLRRTKR   99 (104)
Q Consensus        42 ~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~-----~~~~~~i~~Aye~L~~~~~r   99 (104)
                      ..+++|+|||+++++|.+||+++||+|++++|||++++     .+.|+.|++||++|++...+
T Consensus        14 ~~~~~y~iL~v~~~as~~eIKkAYrrl~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~~~~~~   76 (88)
T d1iura_          14 ILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAFL   76 (88)
T ss_dssp             CHHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHHHHh
Confidence            36899999999999999999999999999999999754     25699999999999865433

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSC20 (HSCB), N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.50  E-value=8.1e-15  Score=88.61  Aligned_cols=56  Identities=18%  Similarity=0.212  Sum_probs=48.1

Q ss_pred             HHHHHhCCCCC--CChHHHHHHHHHHHHHhCCCCCC--CH-------HHHHHHHHHHHHhcchhccc
Q 048549           45 EAAMILGVRES--TPTEKVKESHRRVMVANHPDAGG--SH-------YLASKINEAKAIMLRRTKRS  100 (104)
Q Consensus        45 ea~~iLgl~~~--~s~~eIk~~yr~l~~~~HPDk~g--~~-------~~~~~i~~Aye~L~~~~~r~  100 (104)
                      ++|+||||+.+  ++.++|+++|+++++++|||+..  +.       ..+..|++||++|+++.+|+
T Consensus         2 nyy~lLgl~~~~~~d~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~a~~~~~~i~~Ay~vL~dp~~R~   68 (76)
T d1fpoa1           2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRA   68 (76)
T ss_dssp             HHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred             ChHHHCCCCCCCCCCHHHHHHHHHHHHHHhCccccccchHHHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence            68999999986  56899999999999999999842  22       45788999999999998875

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Auxilin J-domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.43  E-value=5.2e-15  Score=93.84  Aligned_cols=55  Identities=18%  Similarity=0.303  Sum_probs=49.4

Q ss_pred             HHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC-------HHHHHHHHHHHHHhcchhccc
Q 048549           46 AAMILGVRESTPTEKVKESHRRVMVANHPDAGGS-------HYLASKINEAKAIMLRRTKRS  100 (104)
Q Consensus        46 a~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~-------~~~~~~i~~Aye~L~~~~~r~  100 (104)
                      .|++|||++.+|.++|+++|+++++.+|||++.+       ...|..|++||++|+++.+|+
T Consensus        35 ~y~~Lgl~~~~t~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~I~~Ay~~L~d~~~R~   96 (98)
T d1nz6a_          35 KWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKP   96 (98)
T ss_dssp             SCCCCCGGGCCSHHHHHHHHHHHHHHSCHHHHTTSTTHHHHHHHHHHHHHHHHHHHTTTCCC
T ss_pred             CCeecCCCccCCHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHCCHHHHh
Confidence            4789999999999999999999999999998543       257899999999999998886